Query 023695
Match_columns 278
No_of_seqs 197 out of 1228
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 05:57:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023695.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023695hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0031 CysK Cysteine synthase 100.0 9.5E-63 2.1E-67 421.0 31.1 257 1-260 41-299 (300)
2 PLN02565 cysteine synthase 100.0 7.1E-62 1.5E-66 429.8 32.8 278 1-278 45-322 (322)
3 PLN02556 cysteine synthase/L-3 100.0 2.4E-60 5.1E-65 425.9 32.3 277 1-277 89-365 (368)
4 PLN00011 cysteine synthase 100.0 1.2E-58 2.7E-63 410.4 33.9 277 1-277 47-323 (323)
5 PLN03013 cysteine synthase 100.0 1.7E-58 3.8E-63 415.9 29.4 262 1-262 153-415 (429)
6 KOG1252 Cystathionine beta-syn 100.0 4.3E-59 9.4E-64 396.3 20.7 274 1-274 82-360 (362)
7 TIGR01136 cysKM cysteine synth 100.0 1.7E-56 3.6E-61 393.6 31.8 263 1-264 37-299 (299)
8 TIGR01139 cysK cysteine syntha 100.0 3.9E-56 8.5E-61 391.2 32.0 261 1-263 36-297 (298)
9 PRK10717 cysteine synthase A; 100.0 2E-55 4.3E-60 391.7 31.6 270 1-272 43-325 (330)
10 PRK11761 cysM cysteine synthas 100.0 2.5E-55 5.4E-60 384.6 30.1 254 1-265 42-295 (296)
11 PLN02356 phosphateglycerate ki 100.0 5.9E-55 1.3E-59 392.9 30.3 270 1-272 83-410 (423)
12 TIGR01138 cysM cysteine syntha 100.0 1.9E-54 4E-59 378.2 30.6 252 1-263 38-289 (290)
13 cd01561 CBS_like CBS_like: Thi 100.0 4.3E-54 9.3E-59 377.2 31.6 258 1-260 32-291 (291)
14 TIGR01137 cysta_beta cystathio 100.0 5.4E-54 1.2E-58 398.5 31.0 270 1-272 41-319 (454)
15 COG1171 IlvA Threonine dehydra 100.0 3.4E-53 7.3E-58 368.4 24.9 259 1-270 55-326 (347)
16 PRK12483 threonine dehydratase 100.0 3.7E-51 8.1E-56 378.8 28.6 259 1-270 67-337 (521)
17 PLN02550 threonine dehydratase 100.0 1.6E-50 3.5E-55 376.6 27.7 258 1-269 139-408 (591)
18 cd06448 L-Ser-dehyd Serine deh 100.0 2.4E-50 5.2E-55 356.2 27.2 263 1-269 31-314 (316)
19 TIGR01124 ilvA_2Cterm threonin 100.0 3.3E-50 7.1E-55 372.8 28.0 259 1-270 47-317 (499)
20 TIGR01127 ilvA_1Cterm threonin 100.0 2.7E-50 5.9E-55 365.3 25.4 256 1-270 30-297 (380)
21 PRK08813 threonine dehydratase 100.0 6.9E-50 1.5E-54 354.3 27.0 248 1-270 63-321 (349)
22 PRK08526 threonine dehydratase 100.0 4.6E-50 1E-54 363.8 25.9 257 1-270 50-318 (403)
23 PRK06382 threonine dehydratase 100.0 3.4E-50 7.4E-55 366.5 24.7 257 1-269 55-326 (406)
24 PLN02970 serine racemase 100.0 5.1E-50 1.1E-54 356.0 24.9 250 1-260 57-320 (328)
25 PRK09224 threonine dehydratase 100.0 1.6E-49 3.5E-54 369.6 28.4 258 1-270 50-320 (504)
26 PRK06352 threonine synthase; V 100.0 7.3E-50 1.6E-54 357.7 24.6 252 1-262 58-324 (351)
27 PRK08638 threonine dehydratase 100.0 2.4E-49 5.2E-54 351.5 26.2 256 1-269 57-325 (333)
28 PRK08329 threonine synthase; V 100.0 3.4E-49 7.4E-54 353.1 27.4 248 1-259 87-347 (347)
29 TIGR02079 THD1 threonine dehyd 100.0 2.5E-49 5.3E-54 360.5 26.7 257 1-270 46-317 (409)
30 PRK08197 threonine synthase; V 100.0 5E-49 1.1E-53 357.8 27.6 252 1-261 110-386 (394)
31 PRK02991 D-serine dehydratase; 100.0 4.3E-49 9.4E-54 359.2 27.2 265 1-270 114-436 (441)
32 PRK06608 threonine dehydratase 100.0 2E-49 4.4E-54 352.7 24.3 246 1-257 53-310 (338)
33 PRK08639 threonine dehydratase 100.0 4.7E-49 1E-53 360.3 27.3 259 1-270 55-328 (420)
34 PRK07048 serine/threonine dehy 100.0 2.5E-49 5.4E-54 351.2 24.5 248 1-260 54-313 (321)
35 PRK07476 eutB threonine dehydr 100.0 2.4E-49 5.2E-54 351.2 24.2 257 1-271 49-319 (322)
36 PRK08198 threonine dehydratase 100.0 3.1E-49 6.6E-54 361.0 25.3 248 1-260 52-311 (404)
37 PRK06721 threonine synthase; R 100.0 1.3E-48 2.9E-53 349.9 27.9 254 1-265 58-327 (352)
38 PRK07334 threonine dehydratase 100.0 8.5E-49 1.8E-53 357.2 25.3 256 1-270 53-318 (403)
39 PRK07591 threonine synthase; V 100.0 1.5E-48 3.2E-53 356.6 26.8 253 1-261 120-396 (421)
40 TIGR02991 ectoine_eutB ectoine 100.0 1.7E-48 3.6E-53 344.6 26.1 252 1-267 49-314 (317)
41 PRK06110 hypothetical protein; 100.0 1.3E-48 2.8E-53 346.6 25.2 255 1-269 51-317 (322)
42 PRK07409 threonine synthase; V 100.0 3.5E-48 7.6E-53 347.8 27.1 251 1-262 61-328 (353)
43 PRK06815 hypothetical protein; 100.0 2.9E-48 6.4E-53 343.5 25.0 244 1-256 50-306 (317)
44 TIGR02035 D_Ser_am_lyase D-ser 100.0 1.4E-47 3E-52 348.0 28.7 252 1-256 109-420 (431)
45 KOG1250 Threonine/serine dehyd 100.0 3.6E-48 7.8E-53 334.7 23.2 250 1-260 96-357 (457)
46 cd06447 D-Ser-dehyd D-Serine d 100.0 1E-47 2.2E-52 346.3 26.4 237 1-240 91-375 (404)
47 cd01563 Thr-synth_1 Threonine 100.0 1.6E-47 3.5E-52 340.5 27.1 248 1-258 53-324 (324)
48 PRK08246 threonine dehydratase 100.0 5.3E-48 1.1E-52 340.6 23.5 244 1-260 52-307 (310)
49 PRK06381 threonine synthase; V 100.0 1.9E-47 4.1E-52 339.2 26.9 246 1-256 46-318 (319)
50 cd01562 Thr-dehyd Threonine de 100.0 1.6E-47 3.5E-52 337.8 23.8 244 1-256 47-302 (304)
51 KOG1251 Serine racemase [Signa 100.0 1.9E-47 4E-52 311.2 21.0 249 1-261 55-315 (323)
52 PRK06260 threonine synthase; V 100.0 1.1E-46 2.4E-51 342.8 25.9 250 1-261 98-373 (397)
53 PLN02569 threonine synthase 100.0 1.6E-46 3.4E-51 346.0 27.2 254 1-261 165-444 (484)
54 PRK06450 threonine synthase; V 100.0 1.2E-46 2.7E-51 334.4 25.2 237 1-259 80-338 (338)
55 KOG1481 Cysteine synthase [Ami 100.0 1.2E-46 2.5E-51 311.9 22.4 270 1-272 79-376 (391)
56 PRK08206 diaminopropionate amm 100.0 2.4E-46 5.1E-51 339.7 26.2 262 1-268 76-393 (399)
57 cd00640 Trp-synth-beta_II Tryp 100.0 3.9E-45 8.4E-50 312.9 27.3 213 1-253 30-243 (244)
58 PRK05638 threonine synthase; V 100.0 1.9E-45 4.2E-50 338.7 27.1 247 1-259 95-359 (442)
59 TIGR01747 diampropi_NH3ly diam 100.0 6.9E-45 1.5E-49 326.9 27.3 260 1-267 54-373 (376)
60 TIGR00260 thrC threonine synth 100.0 1.2E-44 2.6E-49 322.6 26.1 250 1-260 54-328 (328)
61 cd06446 Trp-synth_B Tryptophan 100.0 1.8E-44 4E-49 324.6 26.7 254 1-261 65-364 (365)
62 TIGR03844 cysteate_syn cysteat 100.0 1.9E-44 4.2E-49 326.0 25.0 251 1-260 100-384 (398)
63 TIGR03528 2_3_DAP_am_ly diamin 100.0 4.6E-44 1E-48 323.7 25.9 260 1-266 73-391 (396)
64 cd06449 ACCD Aminocyclopropane 100.0 1.4E-44 3E-49 319.1 20.4 248 1-255 35-307 (307)
65 PRK13028 tryptophan synthase s 100.0 3.1E-43 6.7E-48 317.0 27.8 256 1-262 93-393 (402)
66 TIGR01415 trpB_rel pyridoxal-p 100.0 3.6E-43 7.7E-48 319.1 28.1 258 1-269 100-417 (419)
67 PRK12391 tryptophan synthase s 100.0 4.4E-43 9.5E-48 318.9 28.0 260 1-268 109-425 (427)
68 TIGR01275 ACC_deam_rel pyridox 100.0 2.4E-44 5.1E-49 318.4 18.7 248 1-256 39-301 (311)
69 TIGR00263 trpB tryptophan synt 100.0 3.8E-43 8.3E-48 317.6 26.3 255 1-261 81-380 (385)
70 PRK04346 tryptophan synthase s 100.0 1.8E-42 3.9E-47 311.6 26.5 256 1-262 89-389 (397)
71 PRK03910 D-cysteine desulfhydr 100.0 2.2E-43 4.7E-48 314.3 19.4 250 1-257 47-320 (331)
72 PRK12390 1-aminocyclopropane-1 100.0 5.7E-43 1.2E-47 312.4 21.3 250 1-256 50-325 (337)
73 PRK13802 bifunctional indole-3 100.0 7.1E-42 1.5E-46 323.9 28.0 257 1-262 362-669 (695)
74 TIGR01274 ACC_deam 1-aminocycl 100.0 1.3E-42 2.9E-47 309.9 21.8 250 1-257 49-325 (337)
75 PLN02618 tryptophan synthase, 100.0 6.5E-42 1.4E-46 308.4 26.3 256 1-262 102-402 (410)
76 PF00291 PALP: Pyridoxal-phosp 100.0 1E-41 2.2E-46 301.0 18.6 242 1-252 39-305 (306)
77 PRK14045 1-aminocyclopropane-1 100.0 5.8E-41 1.3E-45 298.3 19.2 246 1-256 53-315 (329)
78 PRK13803 bifunctional phosphor 100.0 3.1E-39 6.6E-44 306.4 27.0 255 1-261 301-600 (610)
79 COG0498 ThrC Threonine synthas 100.0 6.4E-37 1.4E-41 274.5 22.9 251 1-261 109-378 (411)
80 COG2515 Acd 1-aminocyclopropan 100.0 1.4E-31 3.1E-36 225.6 17.9 250 2-257 48-314 (323)
81 PRK09225 threonine synthase; V 100.0 9E-29 1.9E-33 226.7 24.1 246 1-261 111-417 (462)
82 cd01560 Thr-synth_2 Threonine 100.0 5.5E-28 1.2E-32 221.6 23.1 247 1-261 110-421 (460)
83 COG0133 TrpB Tryptophan syntha 100.0 7.6E-27 1.7E-31 197.5 21.9 256 1-262 86-386 (396)
84 COG1350 Predicted alternative 99.9 1.5E-25 3.2E-30 190.2 22.3 264 1-270 110-428 (432)
85 COG3048 DsdA D-serine dehydrat 99.9 5.7E-24 1.2E-28 179.0 16.2 253 1-256 117-429 (443)
86 KOG1395 Tryptophan synthase be 99.9 4E-22 8.6E-27 170.8 19.9 254 1-260 154-452 (477)
87 PF03808 Glyco_tran_WecB: Glyc 93.2 0.61 1.3E-05 37.5 8.1 100 34-140 12-113 (172)
88 cd08230 glucose_DH Glucose deh 90.9 2 4.4E-05 38.4 9.6 54 19-73 170-223 (355)
89 COG0604 Qor NADPH:quinone redu 90.8 2.9 6.2E-05 37.3 10.2 57 16-75 137-193 (326)
90 TIGR03201 dearomat_had 6-hydro 90.0 5 0.00011 35.9 11.3 59 13-75 158-216 (349)
91 KOG2616 Pyridoxalphosphate-dep 89.8 0.75 1.6E-05 38.2 5.1 58 199-257 148-205 (266)
92 cd08294 leukotriene_B4_DH_like 89.7 5.2 0.00011 35.0 11.0 58 15-75 137-194 (329)
93 cd06533 Glyco_transf_WecG_TagA 89.4 3.6 7.7E-05 33.0 8.8 120 34-161 10-131 (171)
94 TIGR02819 fdhA_non_GSH formald 88.8 7.3 0.00016 35.6 11.6 57 13-72 177-233 (393)
95 TIGR03366 HpnZ_proposed putati 88.0 4.6 9.9E-05 34.9 9.3 58 13-73 112-169 (280)
96 cd01075 NAD_bind_Leu_Phe_Val_D 87.1 9 0.00019 31.6 10.1 66 4-72 7-75 (200)
97 cd08274 MDR9 Medium chain dehy 86.5 8.2 0.00018 34.1 10.3 57 13-73 169-225 (350)
98 COG1064 AdhP Zn-dependent alco 86.3 5.2 0.00011 35.9 8.7 61 13-77 158-218 (339)
99 cd08295 double_bond_reductase_ 86.1 11 0.00024 33.4 10.9 56 15-73 145-201 (338)
100 TIGR02825 B4_12hDH leukotriene 85.6 5.8 0.00013 34.9 8.8 58 15-75 132-189 (325)
101 TIGR00670 asp_carb_tr aspartat 85.5 6 0.00013 34.9 8.7 59 16-76 145-208 (301)
102 PRK09424 pntA NAD(P) transhydr 85.5 33 0.00071 32.7 14.0 51 24-77 166-216 (509)
103 TIGR03451 mycoS_dep_FDH mycoth 85.4 11 0.00024 33.7 10.7 58 14-74 169-226 (358)
104 KOG0025 Zn2+-binding dehydroge 85.3 5.4 0.00012 34.9 7.9 69 5-77 147-217 (354)
105 TIGR02822 adh_fam_2 zinc-bindi 85.0 4.9 0.00011 35.7 8.0 57 14-74 158-214 (329)
106 TIGR00696 wecB_tagA_cpsF bacte 84.4 9.3 0.0002 30.9 8.7 97 35-139 13-111 (177)
107 PF05368 NmrA: NmrA-like famil 84.1 6.7 0.00015 32.7 8.2 51 26-77 2-52 (233)
108 cd08256 Zn_ADH2 Alcohol dehydr 84.0 18 0.0004 32.0 11.4 56 15-73 168-223 (350)
109 cd08281 liver_ADH_like1 Zinc-d 83.8 14 0.0003 33.3 10.6 57 15-74 185-241 (371)
110 cd08233 butanediol_DH_like (2R 83.7 18 0.00039 32.1 11.2 57 15-74 166-222 (351)
111 cd08293 PTGR2 Prostaglandin re 83.1 19 0.00041 31.8 11.0 58 15-75 146-207 (345)
112 PLN03154 putative allyl alcoho 83.0 17 0.00038 32.5 10.8 57 15-74 152-209 (348)
113 PRK14030 glutamate dehydrogena 82.6 10 0.00022 35.3 9.2 50 4-53 209-258 (445)
114 cd08292 ETR_like_2 2-enoyl thi 82.5 15 0.00033 31.9 10.1 55 14-71 132-186 (324)
115 PRK09880 L-idonate 5-dehydroge 82.0 15 0.00033 32.6 10.0 58 14-74 162-219 (343)
116 cd08239 THR_DH_like L-threonin 82.0 11 0.00024 33.3 9.1 57 14-74 156-213 (339)
117 cd08296 CAD_like Cinnamyl alco 81.9 18 0.00038 32.0 10.3 51 18-72 160-210 (333)
118 PF01210 NAD_Gly3P_dh_N: NAD-d 81.3 3.7 8E-05 32.3 5.1 42 26-70 2-43 (157)
119 KOG0023 Alcohol dehydrogenase, 80.7 12 0.00025 33.4 8.2 58 17-77 177-234 (360)
120 cd08297 CAD3 Cinnamyl alcohol 80.6 21 0.00045 31.5 10.3 52 18-72 162-213 (341)
121 cd08289 MDR_yhfp_like Yhfp put 80.5 15 0.00032 32.0 9.3 48 22-72 147-194 (326)
122 PRK10309 galactitol-1-phosphat 80.4 12 0.00026 33.3 8.8 57 14-73 153-209 (347)
123 cd08242 MDR_like Medium chain 80.2 16 0.00035 31.8 9.5 56 14-73 148-203 (319)
124 COG1063 Tdh Threonine dehydrog 80.2 44 0.00096 30.0 14.8 51 25-77 171-222 (350)
125 TIGR01751 crot-CoA-red crotony 79.9 15 0.00031 33.6 9.3 56 17-75 185-240 (398)
126 PF02826 2-Hacid_dh_C: D-isome 79.8 8.6 0.00019 30.9 6.9 118 24-166 37-156 (178)
127 cd08300 alcohol_DH_class_III c 79.0 13 0.00029 33.3 8.7 57 15-74 180-236 (368)
128 PF00107 ADH_zinc_N: Zinc-bind 79.0 8.4 0.00018 28.7 6.3 39 35-76 3-41 (130)
129 TIGR02818 adh_III_F_hyde S-(hy 78.8 17 0.00037 32.7 9.4 57 15-74 179-235 (368)
130 cd08301 alcohol_DH_plants Plan 78.8 14 0.0003 33.2 8.7 57 15-74 181-237 (369)
131 cd08287 FDH_like_ADH3 formalde 78.5 35 0.00075 30.1 11.1 54 15-71 162-215 (345)
132 COG2130 Putative NADP-dependen 78.5 19 0.00042 31.8 8.8 59 14-75 143-202 (340)
133 PTZ00354 alcohol dehydrogenase 78.3 31 0.00067 30.0 10.7 55 17-74 136-190 (334)
134 PTZ00079 NADP-specific glutama 78.3 18 0.00039 33.8 9.2 50 4-53 218-267 (454)
135 PRK10754 quinone oxidoreductas 78.2 37 0.0008 29.6 11.1 54 16-72 135-188 (327)
136 PRK13656 trans-2-enoyl-CoA red 78.1 50 0.0011 30.4 11.8 48 5-53 23-73 (398)
137 PLN02740 Alcohol dehydrogenase 78.0 15 0.00032 33.3 8.7 56 15-74 192-248 (381)
138 PF00185 OTCace: Aspartate/orn 78.0 12 0.00026 29.5 7.1 45 32-76 13-65 (158)
139 PRK05396 tdh L-threonine 3-deh 77.3 19 0.00041 31.8 9.0 52 20-74 162-213 (341)
140 COG1751 Uncharacterized conser 77.1 20 0.00043 28.2 7.7 68 3-76 13-90 (186)
141 PRK08703 short chain dehydroge 77.1 37 0.0008 28.1 10.4 30 24-53 8-37 (239)
142 cd08269 Zn_ADH9 Alcohol dehydr 77.0 37 0.0008 29.2 10.7 54 14-71 122-176 (312)
143 cd08277 liver_alcohol_DH_like 76.7 20 0.00042 32.3 9.1 56 15-73 178-233 (365)
144 cd08231 MDR_TM0436_like Hypoth 76.6 45 0.00098 29.7 11.4 52 17-72 173-225 (361)
145 PF00764 Arginosuc_synth: Argi 76.6 39 0.00085 30.9 10.8 127 26-160 1-138 (388)
146 cd08288 MDR_yhdh Yhdh putative 76.5 23 0.00049 30.8 9.3 51 21-74 146-196 (324)
147 cd05313 NAD_bind_2_Glu_DH NAD( 76.3 27 0.0006 30.0 9.2 51 4-54 19-69 (254)
148 PF01041 DegT_DnrJ_EryC1: DegT 76.0 6.3 0.00014 35.6 5.7 54 24-77 41-94 (363)
149 TIGR01064 pyruv_kin pyruvate k 76.0 58 0.0013 30.7 12.1 123 38-166 262-407 (473)
150 cd08285 NADP_ADH NADP(H)-depen 76.0 39 0.00085 29.9 10.8 56 14-72 159-214 (351)
151 cd08284 FDH_like_2 Glutathione 75.9 21 0.00045 31.5 8.9 53 17-72 163-215 (344)
152 KOG1201 Hydroxysteroid 17-beta 75.7 42 0.00091 29.5 10.2 74 22-96 38-113 (300)
153 cd08298 CAD2 Cinnamyl alcohol 75.4 21 0.00046 31.2 8.8 53 15-71 161-213 (329)
154 cd08258 Zn_ADH4 Alcohol dehydr 75.3 43 0.00094 29.1 10.7 55 15-71 158-212 (306)
155 PF00070 Pyr_redox: Pyridine n 75.2 23 0.00049 24.0 7.9 49 26-74 2-59 (80)
156 cd08250 Mgc45594_like Mgc45594 75.0 46 0.001 29.0 10.9 52 17-71 135-186 (329)
157 cd08246 crotonyl_coA_red croto 75.0 14 0.00031 33.5 7.7 55 17-74 189-243 (393)
158 PRK07062 short chain dehydroge 74.9 42 0.00092 28.3 10.3 32 24-55 10-41 (265)
159 PRK05993 short chain dehydroge 74.8 53 0.0012 28.0 11.1 64 24-91 6-69 (277)
160 cd08291 ETR_like_1 2-enoyl thi 74.7 36 0.00077 29.8 10.0 51 22-75 143-194 (324)
161 TIGR00692 tdh L-threonine 3-de 74.4 29 0.00064 30.6 9.5 51 19-72 159-209 (340)
162 cd08243 quinone_oxidoreductase 74.1 29 0.00063 29.9 9.3 54 17-73 138-191 (320)
163 cd08251 polyketide_synthase po 74.1 52 0.0011 27.9 10.8 55 14-71 113-167 (303)
164 PRK15408 autoinducer 2-binding 73.8 66 0.0014 28.7 16.8 43 117-162 199-242 (336)
165 COG0078 ArgF Ornithine carbamo 73.8 24 0.00053 31.0 8.3 54 24-77 155-214 (310)
166 KOG0024 Sorbitol dehydrogenase 73.7 20 0.00043 32.0 7.7 63 12-77 160-222 (354)
167 KOG2862 Alanine-glyoxylate ami 73.4 43 0.00093 29.8 9.6 84 24-107 69-154 (385)
168 cd08259 Zn_ADH5 Alcohol dehydr 73.3 31 0.00066 30.0 9.3 52 17-71 158-209 (332)
169 cd08245 CAD Cinnamyl alcohol d 73.3 28 0.00062 30.4 9.1 56 15-74 156-211 (330)
170 cd00401 AdoHcyase S-adenosyl-L 73.0 18 0.00039 33.5 7.8 53 17-73 197-249 (413)
171 cd06324 PBP1_ABC_sugar_binding 72.9 62 0.0013 28.0 17.3 43 117-162 192-238 (305)
172 cd08244 MDR_enoyl_red Possible 72.7 40 0.00086 29.2 9.8 54 15-71 136-189 (324)
173 PRK12823 benD 1,6-dihydroxycyc 72.7 31 0.00067 29.0 8.9 71 24-94 10-81 (260)
174 PRK12771 putative glutamate sy 72.6 9.9 0.00021 36.6 6.4 55 20-75 135-207 (564)
175 PRK06182 short chain dehydroge 72.3 60 0.0013 27.5 10.9 67 24-94 5-71 (273)
176 PRK09422 ethanol-active dehydr 71.7 47 0.001 29.1 10.1 55 15-73 156-211 (338)
177 PRK10083 putative oxidoreducta 71.6 49 0.0011 29.0 10.2 59 13-74 152-211 (339)
178 TIGR02823 oxido_YhdH putative 71.5 29 0.00064 30.2 8.7 54 15-71 138-192 (323)
179 cd05288 PGDH Prostaglandin deh 71.4 55 0.0012 28.5 10.5 53 16-71 140-193 (329)
180 cd05282 ETR_like 2-enoyl thioe 71.3 40 0.00086 29.2 9.5 53 16-71 133-185 (323)
181 PLN02702 L-idonate 5-dehydroge 71.2 42 0.0009 30.0 9.8 57 15-74 175-231 (364)
182 PF07279 DUF1442: Protein of u 71.2 30 0.00065 28.9 7.9 56 12-70 34-94 (218)
183 cd08261 Zn_ADH7 Alcohol dehydr 70.9 70 0.0015 28.0 11.1 52 15-70 153-204 (337)
184 PRK12809 putative oxidoreducta 70.9 17 0.00037 35.6 7.6 52 24-75 311-380 (639)
185 PRK06935 2-deoxy-D-gluconate 3 70.8 45 0.00098 28.0 9.5 72 24-95 17-89 (258)
186 PRK12743 oxidoreductase; Provi 70.8 33 0.00071 28.9 8.6 72 24-95 4-78 (256)
187 PLN02827 Alcohol dehydrogenase 70.7 39 0.00084 30.6 9.5 56 15-73 187-242 (378)
188 PRK08340 glucose-1-dehydrogena 70.6 63 0.0014 27.1 10.6 30 24-53 2-31 (259)
189 TIGR02824 quinone_pig3 putativ 70.3 69 0.0015 27.4 11.1 55 14-71 132-186 (325)
190 PF00106 adh_short: short chai 70.2 44 0.00096 25.7 8.7 53 24-76 2-58 (167)
191 PRK08628 short chain dehydroge 70.1 46 0.001 27.8 9.4 53 24-76 9-61 (258)
192 cd08299 alcohol_DH_class_I_II_ 70.1 34 0.00073 30.9 9.0 54 15-71 184-237 (373)
193 PRK12481 2-deoxy-D-gluconate 3 70.1 46 0.001 27.9 9.3 70 24-94 10-80 (251)
194 PRK05854 short chain dehydroge 69.9 57 0.0012 28.6 10.2 31 24-54 16-46 (313)
195 cd05211 NAD_bind_Glu_Leu_Phe_V 69.7 29 0.00063 29.0 7.8 52 4-55 4-55 (217)
196 PF04127 DFP: DNA / pantothena 69.7 30 0.00066 28.1 7.7 63 24-95 21-83 (185)
197 cd08253 zeta_crystallin Zeta-c 69.6 71 0.0015 27.3 10.8 52 17-71 140-191 (325)
198 PRK07109 short chain dehydroge 69.4 35 0.00077 30.3 8.8 72 24-95 10-83 (334)
199 cd08264 Zn_ADH_like2 Alcohol d 69.3 33 0.00072 29.9 8.6 38 15-52 156-193 (325)
200 TIGR02853 spore_dpaA dipicolin 69.2 51 0.0011 28.8 9.6 63 6-71 134-196 (287)
201 cd05188 MDR Medium chain reduc 69.1 62 0.0013 26.9 10.0 52 17-72 130-181 (271)
202 cd08278 benzyl_alcohol_DH Benz 69.1 65 0.0014 28.9 10.6 55 16-73 181-235 (365)
203 cd08267 MDR1 Medium chain dehy 69.1 40 0.00088 28.9 9.0 51 17-71 139-189 (319)
204 PRK12828 short chain dehydroge 69.0 56 0.0012 26.7 9.6 55 23-77 8-63 (239)
205 cd05285 sorbitol_DH Sorbitol d 69.0 50 0.0011 29.1 9.7 57 14-73 155-211 (343)
206 PRK08589 short chain dehydroge 68.9 39 0.00085 28.8 8.7 71 24-94 8-79 (272)
207 PRK08261 fabG 3-ketoacyl-(acyl 68.6 67 0.0015 29.7 10.8 72 22-94 210-281 (450)
208 cd08282 PFDH_like Pseudomonas 68.6 41 0.00089 30.3 9.2 55 15-72 170-224 (375)
209 cd05281 TDH Threonine dehydrog 68.6 39 0.00085 29.8 8.9 50 20-72 162-211 (341)
210 PF09837 DUF2064: Uncharacteri 68.5 48 0.001 24.9 9.1 97 38-140 2-99 (122)
211 PRK08226 short chain dehydroge 68.4 45 0.00098 28.0 9.0 53 24-76 8-60 (263)
212 cd05286 QOR2 Quinone oxidoredu 68.2 75 0.0016 27.0 11.0 53 16-71 131-183 (320)
213 PRK08306 dipicolinate synthase 68.0 58 0.0013 28.6 9.7 46 25-73 154-199 (296)
214 TIGR02817 adh_fam_1 zinc-bindi 67.6 40 0.00088 29.5 8.8 48 22-72 149-197 (336)
215 PF01262 AlaDh_PNT_C: Alanine 67.6 24 0.00053 27.9 6.7 50 25-77 22-71 (168)
216 TIGR00730 conserved hypothetic 67.5 53 0.0011 26.5 8.6 50 114-166 17-67 (178)
217 cd05283 CAD1 Cinnamyl alcohol 67.4 45 0.00097 29.4 9.1 52 19-74 167-218 (337)
218 PRK06348 aspartate aminotransf 67.1 69 0.0015 28.9 10.4 52 24-76 90-141 (384)
219 PRK02610 histidinol-phosphate 67.1 35 0.00076 30.8 8.4 53 25-77 93-145 (374)
220 cd08262 Zn_ADH8 Alcohol dehydr 67.0 56 0.0012 28.7 9.6 55 14-71 154-208 (341)
221 PRK07550 hypothetical protein; 67.0 87 0.0019 28.2 11.0 53 24-77 91-143 (386)
222 PRK08993 2-deoxy-D-gluconate 3 66.9 76 0.0016 26.6 10.2 70 24-94 12-82 (253)
223 PF00107 ADH_zinc_N: Zinc-bind 66.8 18 0.0004 26.8 5.6 82 62-162 7-89 (130)
224 TIGR01832 kduD 2-deoxy-D-gluco 66.5 67 0.0015 26.6 9.6 70 24-94 7-77 (248)
225 PRK13394 3-hydroxybutyrate deh 66.4 62 0.0013 27.0 9.5 53 24-76 9-62 (262)
226 PRK06197 short chain dehydroge 66.4 74 0.0016 27.6 10.1 32 24-55 18-49 (306)
227 cd08286 FDH_like_ADH2 formalde 66.3 57 0.0012 28.7 9.5 52 16-71 161-213 (345)
228 TIGR00561 pntA NAD(P) transhyd 65.8 35 0.00077 32.5 8.2 50 25-77 166-215 (511)
229 cd05279 Zn_ADH1 Liver alcohol 65.8 79 0.0017 28.3 10.4 54 15-71 177-230 (365)
230 cd08260 Zn_ADH6 Alcohol dehydr 65.6 66 0.0014 28.3 9.8 51 16-70 160-210 (345)
231 cd05284 arabinose_DH_like D-ar 65.4 81 0.0018 27.6 10.3 50 18-71 164-214 (340)
232 cd05278 FDH_like Formaldehyde 65.4 57 0.0012 28.7 9.3 54 15-71 161-214 (347)
233 PRK05557 fabG 3-ketoacyl-(acyl 65.2 72 0.0016 26.2 9.5 54 24-77 7-62 (248)
234 PRK06139 short chain dehydroge 65.1 42 0.00092 29.8 8.4 53 24-76 9-62 (330)
235 cd08279 Zn_ADH_class_III Class 65.1 1E+02 0.0022 27.5 11.0 54 15-71 176-229 (363)
236 COG1587 HemD Uroporphyrinogen- 65.1 53 0.0012 27.8 8.7 122 35-165 86-214 (248)
237 PRK09242 tropinone reductase; 65.0 82 0.0018 26.3 10.8 31 24-54 11-41 (257)
238 PRK10669 putative cation:proto 64.8 31 0.00067 33.2 7.9 51 24-77 418-468 (558)
239 PRK06114 short chain dehydroge 64.7 83 0.0018 26.3 10.1 53 24-76 10-64 (254)
240 PRK14031 glutamate dehydrogena 64.6 36 0.00078 31.8 7.9 51 4-54 209-259 (444)
241 cd08240 6_hydroxyhexanoate_dh_ 64.5 90 0.002 27.5 10.5 50 19-71 173-222 (350)
242 cd08255 2-desacetyl-2-hydroxye 64.1 58 0.0012 27.6 8.9 51 15-69 91-142 (277)
243 cd08238 sorbose_phosphate_red 63.7 46 0.001 30.5 8.6 51 16-68 170-222 (410)
244 PRK05786 fabG 3-ketoacyl-(acyl 63.7 59 0.0013 26.7 8.7 32 24-55 7-38 (238)
245 PRK12937 short chain dehydroge 63.6 82 0.0018 25.9 9.6 54 24-77 7-62 (245)
246 PRK07523 gluconate 5-dehydroge 63.3 64 0.0014 27.0 8.9 53 24-76 12-65 (255)
247 PF08659 KR: KR domain; Inter 63.2 53 0.0011 26.2 8.0 71 24-94 2-78 (181)
248 PRK10490 sensor protein KdpD; 63.2 91 0.002 32.0 11.2 107 24-137 252-375 (895)
249 cd08254 hydroxyacyl_CoA_DH 6-h 63.0 1E+02 0.0022 26.8 10.8 55 16-74 160-214 (338)
250 PRK11891 aspartate carbamoyltr 62.9 51 0.0011 30.7 8.6 52 25-76 243-300 (429)
251 TIGR01316 gltA glutamate synth 62.8 36 0.00078 31.7 7.8 53 24-76 273-330 (449)
252 PRK07792 fabG 3-ketoacyl-(acyl 62.8 73 0.0016 27.8 9.4 54 24-77 14-69 (306)
253 cd05280 MDR_yhdh_yhfp Yhdh and 62.6 67 0.0015 27.7 9.2 48 23-73 148-195 (325)
254 KOG1197 Predicted quinone oxid 62.6 92 0.002 27.1 9.2 33 15-47 140-172 (336)
255 cd08249 enoyl_reductase_like e 62.6 55 0.0012 28.9 8.7 48 20-71 153-200 (339)
256 PLN02586 probable cinnamyl alc 62.5 57 0.0012 29.3 8.9 55 17-74 179-233 (360)
257 cd08270 MDR4 Medium chain dehy 62.5 73 0.0016 27.3 9.3 50 21-73 132-181 (305)
258 PRK12384 sorbitol-6-phosphate 62.5 92 0.002 26.0 10.5 31 24-54 4-34 (259)
259 COG2894 MinD Septum formation 62.3 66 0.0014 27.3 8.2 119 37-167 22-149 (272)
260 PRK00779 ornithine carbamoyltr 62.2 54 0.0012 29.0 8.3 61 15-76 146-209 (304)
261 COG0300 DltE Short-chain dehyd 62.0 1.1E+02 0.0023 26.6 9.9 67 24-93 8-80 (265)
262 PRK07097 gluconate 5-dehydroge 61.8 68 0.0015 27.0 8.9 71 24-94 12-84 (265)
263 cd08234 threonine_DH_like L-th 61.8 93 0.002 27.1 10.0 54 15-71 153-206 (334)
264 PRK08192 aspartate carbamoyltr 61.5 48 0.001 29.8 8.0 53 25-77 161-219 (338)
265 COG0623 FabI Enoyl-[acyl-carri 61.4 54 0.0012 27.9 7.6 68 63-137 26-93 (259)
266 COG0075 Serine-pyruvate aminot 61.3 25 0.00055 32.1 6.2 53 25-77 58-111 (383)
267 PRK05826 pyruvate kinase; Prov 61.3 1.3E+02 0.0029 28.3 11.1 124 38-166 264-407 (465)
268 PRK08063 enoyl-(acyl carrier p 61.0 95 0.0021 25.7 9.7 54 23-76 5-60 (250)
269 cd08241 QOR1 Quinone oxidoredu 60.9 1.1E+02 0.0023 26.2 10.6 53 16-71 134-186 (323)
270 cd08248 RTN4I1 Human Reticulon 60.7 40 0.00086 29.7 7.4 46 22-71 163-208 (350)
271 cd08276 MDR7 Medium chain dehy 60.7 1.1E+02 0.0024 26.4 10.8 52 17-72 156-207 (336)
272 PLN02527 aspartate carbamoyltr 60.7 1.1E+02 0.0024 27.0 10.1 59 16-76 146-210 (306)
273 PLN02342 ornithine carbamoyltr 60.6 58 0.0013 29.4 8.3 61 15-76 188-251 (348)
274 cd08290 ETR 2-enoyl thioester 60.6 63 0.0014 28.3 8.7 58 17-74 142-200 (341)
275 cd08235 iditol_2_DH_like L-idi 60.5 1.2E+02 0.0025 26.6 11.4 53 15-70 159-211 (343)
276 PRK04148 hypothetical protein; 60.3 48 0.001 25.5 6.7 49 25-77 19-67 (134)
277 PRK09134 short chain dehydroge 60.2 1E+02 0.0022 25.8 9.9 54 23-76 10-65 (258)
278 PF13561 adh_short_C2: Enoyl-( 60.1 47 0.001 27.6 7.4 64 30-94 4-69 (241)
279 PRK08277 D-mannonate oxidoredu 59.8 84 0.0018 26.7 9.1 53 24-76 12-65 (278)
280 PRK09414 glutamate dehydrogena 59.6 41 0.00089 31.5 7.4 51 4-54 213-263 (445)
281 PRK03692 putative UDP-N-acetyl 59.5 69 0.0015 27.3 8.2 67 62-139 98-168 (243)
282 COG0836 {ManC} Mannose-1-phosp 59.4 30 0.00065 30.8 6.0 55 25-95 80-138 (333)
283 PF00670 AdoHcyase_NAD: S-aden 59.2 62 0.0013 25.8 7.3 88 24-139 24-112 (162)
284 PF02310 B12-binding: B12 bind 59.0 42 0.00091 24.5 6.3 94 35-138 17-114 (121)
285 PRK12935 acetoacetyl-CoA reduc 59.0 89 0.0019 25.8 9.0 54 24-77 8-63 (247)
286 PRK11706 TDP-4-oxo-6-deoxy-D-g 58.9 36 0.00078 30.8 6.9 54 24-77 47-100 (375)
287 COG0159 TrpA Tryptophan syntha 58.8 1E+02 0.0022 26.7 9.1 83 4-90 79-168 (265)
288 PLN02178 cinnamyl-alcohol dehy 58.7 36 0.00079 30.8 6.9 51 20-73 177-227 (375)
289 PRK06172 short chain dehydroge 58.6 91 0.002 25.9 9.0 53 24-76 9-62 (253)
290 PRK12939 short chain dehydroge 58.6 89 0.0019 25.8 8.9 53 24-76 9-62 (250)
291 PRK03562 glutathione-regulated 58.0 52 0.0011 32.3 8.2 51 24-77 401-451 (621)
292 cd08272 MDR6 Medium chain dehy 58.0 88 0.0019 26.8 9.1 54 15-72 138-191 (326)
293 TIGR03538 DapC_gpp succinyldia 57.8 85 0.0019 28.4 9.2 53 25-77 92-145 (393)
294 PRK08862 short chain dehydroge 57.5 87 0.0019 26.0 8.6 52 24-75 7-59 (227)
295 PRK06079 enoyl-(acyl carrier p 57.5 86 0.0019 26.3 8.7 31 24-54 9-41 (252)
296 PRK06836 aspartate aminotransf 57.2 92 0.002 28.3 9.3 52 25-77 98-149 (394)
297 PF03853 YjeF_N: YjeF-related 57.2 94 0.002 24.7 8.3 52 24-75 27-87 (169)
298 PRK12938 acetyacetyl-CoA reduc 57.0 92 0.002 25.7 8.8 53 24-76 5-59 (246)
299 PF02737 3HCDH_N: 3-hydroxyacy 56.9 41 0.00089 27.1 6.2 30 26-55 2-31 (180)
300 PRK03659 glutathione-regulated 56.8 50 0.0011 32.2 7.8 51 24-77 401-451 (601)
301 PRK08303 short chain dehydroge 56.8 1.1E+02 0.0025 26.7 9.5 72 24-95 10-93 (305)
302 PRK09147 succinyldiaminopimela 56.5 89 0.0019 28.3 9.1 52 25-77 92-146 (396)
303 PLN00175 aminotransferase fami 56.5 70 0.0015 29.4 8.5 51 26-77 118-168 (413)
304 PRK05653 fabG 3-ketoacyl-(acyl 56.4 1E+02 0.0022 25.2 8.9 53 24-76 7-60 (246)
305 PRK07035 short chain dehydroge 56.4 1E+02 0.0023 25.5 9.0 52 24-75 10-62 (252)
306 PRK13376 pyrB bifunctional asp 56.4 58 0.0012 31.2 7.9 52 25-76 176-233 (525)
307 PRK08217 fabG 3-ketoacyl-(acyl 56.3 97 0.0021 25.6 8.8 53 24-76 7-60 (253)
308 TIGR00936 ahcY adenosylhomocys 56.2 37 0.00081 31.3 6.5 94 20-141 193-286 (406)
309 PRK12769 putative oxidoreducta 56.2 46 0.001 32.7 7.6 51 24-74 328-396 (654)
310 PRK06806 fructose-bisphosphate 56.0 1.4E+02 0.003 26.1 12.7 127 6-138 31-176 (281)
311 PF13460 NAD_binding_10: NADH( 55.9 33 0.00071 27.1 5.5 47 26-77 2-48 (183)
312 cd05289 MDR_like_2 alcohol deh 55.9 1E+02 0.0022 26.1 9.0 50 17-70 140-189 (309)
313 PRK08643 acetoin reductase; Va 55.9 1.2E+02 0.0026 25.3 9.4 53 24-76 4-57 (256)
314 PRK08912 hypothetical protein; 55.9 1.6E+02 0.0034 26.6 11.3 52 25-77 89-140 (387)
315 PRK02255 putrescine carbamoylt 55.5 88 0.0019 28.1 8.6 45 32-76 164-214 (338)
316 PRK07478 short chain dehydroge 55.4 1E+02 0.0022 25.7 8.8 72 24-95 8-81 (254)
317 PRK06181 short chain dehydroge 55.4 95 0.0021 26.0 8.7 53 24-76 3-56 (263)
318 PRK08017 oxidoreductase; Provi 55.4 1.2E+02 0.0026 25.2 9.7 51 24-77 4-54 (256)
319 PRK05876 short chain dehydroge 55.3 1.1E+02 0.0024 26.2 9.1 71 24-94 8-80 (275)
320 PRK06841 short chain dehydroge 55.2 1.2E+02 0.0026 25.1 9.4 32 24-55 17-48 (255)
321 PRK06483 dihydromonapterin red 55.2 1.2E+02 0.0025 25.0 10.3 67 24-93 4-70 (236)
322 PRK07806 short chain dehydroge 55.0 1.2E+02 0.0026 25.0 9.4 53 24-76 8-62 (248)
323 PRK08278 short chain dehydroge 55.0 1.3E+02 0.0029 25.5 9.8 53 24-76 8-68 (273)
324 PRK07454 short chain dehydroge 55.0 1.1E+02 0.0024 25.2 8.9 71 24-94 8-80 (241)
325 PRK07791 short chain dehydroge 55.0 1.2E+02 0.0026 26.0 9.4 73 23-95 7-90 (286)
326 PRK12744 short chain dehydroge 55.0 1E+02 0.0022 25.8 8.7 70 24-93 10-85 (257)
327 PRK12826 3-ketoacyl-(acyl-carr 54.9 1.1E+02 0.0024 25.2 8.9 53 24-76 8-61 (251)
328 COG2247 LytB Putative cell wal 54.8 52 0.0011 29.2 6.7 53 44-96 73-127 (337)
329 PRK07666 fabG 3-ketoacyl-(acyl 54.6 1.2E+02 0.0026 24.9 9.0 53 24-76 9-62 (239)
330 PRK06505 enoyl-(acyl carrier p 54.6 1.4E+02 0.003 25.5 9.7 70 24-94 9-82 (271)
331 PF13478 XdhC_C: XdhC Rossmann 54.5 19 0.00041 27.7 3.7 31 26-56 1-31 (136)
332 PRK07831 short chain dehydroge 54.4 1.3E+02 0.0028 25.2 10.5 31 22-52 17-48 (262)
333 TIGR00658 orni_carb_tr ornithi 54.4 98 0.0021 27.3 8.6 61 15-76 142-208 (304)
334 PRK06701 short chain dehydroge 54.3 1.4E+02 0.0031 25.7 9.9 54 23-76 47-102 (290)
335 PRK14804 ornithine carbamoyltr 54.2 75 0.0016 28.2 7.9 35 24-58 155-189 (311)
336 PLN02477 glutamate dehydrogena 54.1 1.1E+02 0.0025 28.2 9.3 51 4-54 187-237 (410)
337 PRK07832 short chain dehydroge 54.0 1.4E+02 0.0029 25.3 10.5 30 24-53 2-31 (272)
338 PF11760 CbiG_N: Cobalamin syn 53.9 24 0.00052 24.8 3.7 48 121-168 4-51 (84)
339 cd08265 Zn_ADH3 Alcohol dehydr 53.8 66 0.0014 29.1 7.8 53 17-72 199-251 (384)
340 CHL00194 ycf39 Ycf39; Provisio 53.8 63 0.0014 28.3 7.5 50 24-76 2-51 (317)
341 PRK13243 glyoxylate reductase; 53.7 92 0.002 27.8 8.5 96 24-143 151-246 (333)
342 cd08283 FDH_like_1 Glutathione 53.7 1.1E+02 0.0023 27.7 9.2 55 15-72 178-233 (386)
343 PRK12831 putative oxidoreducta 53.4 65 0.0014 30.2 7.8 53 24-76 282-339 (464)
344 PRK06128 oxidoreductase; Provi 53.4 1.5E+02 0.0032 25.6 10.1 72 23-94 56-131 (300)
345 PRK12779 putative bifunctional 53.3 32 0.0007 35.5 6.1 51 24-74 307-375 (944)
346 PRK06194 hypothetical protein; 53.3 1.4E+02 0.0031 25.3 9.7 71 24-94 8-80 (287)
347 PLN02514 cinnamyl-alcohol dehy 53.1 1.3E+02 0.0028 26.9 9.5 54 17-73 176-229 (357)
348 KOG1176 Acyl-CoA synthetase [L 53.0 2.2E+02 0.0048 27.4 12.1 59 19-77 69-127 (537)
349 KOG0022 Alcohol dehydrogenase, 52.9 1.7E+02 0.0038 26.2 11.8 117 14-167 185-301 (375)
350 COG2242 CobL Precorrin-6B meth 52.7 1.1E+02 0.0023 25.1 7.8 132 19-163 32-187 (187)
351 TIGR03206 benzo_BadH 2-hydroxy 52.6 1.2E+02 0.0025 25.1 8.7 54 24-77 5-59 (250)
352 COG0399 WecE Predicted pyridox 52.4 87 0.0019 28.6 8.1 55 24-78 50-104 (374)
353 PRK06702 O-acetylhomoserine am 52.4 88 0.0019 29.2 8.4 79 25-108 78-160 (432)
354 PRK05693 short chain dehydroge 52.3 1.4E+02 0.0031 25.1 10.4 66 24-93 3-68 (274)
355 PRK07890 short chain dehydroge 52.3 1.1E+02 0.0025 25.3 8.6 54 23-76 6-60 (258)
356 PRK07069 short chain dehydroge 52.2 1.3E+02 0.0029 24.7 9.5 31 25-55 2-32 (251)
357 PRK06949 short chain dehydroge 52.2 1.1E+02 0.0024 25.4 8.6 32 24-55 11-42 (258)
358 PF02254 TrkA_N: TrkA-N domain 52.1 87 0.0019 22.6 7.8 48 27-77 2-49 (116)
359 PRK05866 short chain dehydroge 52.1 1.1E+02 0.0025 26.4 8.8 53 24-76 42-95 (293)
360 PRK15481 transcriptional regul 52.0 1.8E+02 0.0039 26.7 10.5 81 25-108 143-225 (431)
361 PRK06124 gluconate 5-dehydroge 52.0 1.2E+02 0.0026 25.2 8.7 53 23-75 12-65 (256)
362 TIGR01470 cysG_Nterm siroheme 51.9 1.3E+02 0.0029 24.7 8.9 33 25-57 11-43 (205)
363 PRK14807 histidinol-phosphate 51.8 87 0.0019 27.9 8.1 52 25-77 78-129 (351)
364 TIGR03590 PseG pseudaminic aci 51.7 1.5E+02 0.0033 25.5 9.4 16 62-77 73-88 (279)
365 cd00288 Pyruvate_Kinase Pyruva 51.6 97 0.0021 29.4 8.5 39 38-77 367-406 (480)
366 PRK12429 3-hydroxybutyrate deh 51.5 1.4E+02 0.003 24.7 9.2 53 24-76 6-59 (258)
367 PRK05957 aspartate aminotransf 51.5 85 0.0018 28.4 8.1 54 24-78 90-143 (389)
368 PRK14805 ornithine carbamoyltr 51.4 58 0.0013 28.7 6.7 60 16-76 142-207 (302)
369 PRK05166 histidinol-phosphate 51.3 80 0.0017 28.3 7.9 52 25-77 90-141 (371)
370 cd08185 Fe-ADH1 Iron-containin 51.3 1.1E+02 0.0023 27.9 8.7 30 48-77 4-33 (380)
371 PRK08936 glucose-1-dehydrogena 50.8 1.5E+02 0.0032 24.8 9.7 53 24-76 9-63 (261)
372 PRK04870 histidinol-phosphate 50.8 98 0.0021 27.5 8.3 52 25-77 83-134 (356)
373 PRK05867 short chain dehydroge 50.7 1.4E+02 0.0031 24.8 9.0 71 24-94 11-83 (253)
374 PRK05973 replicative DNA helic 50.7 75 0.0016 27.0 7.0 54 17-70 59-116 (237)
375 TIGR03325 BphB_TodD cis-2,3-di 50.6 1.5E+02 0.0033 24.8 9.4 49 24-75 7-56 (262)
376 PLN02918 pyridoxine (pyridoxam 50.3 1.5E+02 0.0033 28.5 9.7 49 24-72 137-192 (544)
377 TIGR02379 ECA_wecE TDP-4-keto- 50.2 55 0.0012 29.7 6.6 54 24-77 47-100 (376)
378 PRK08213 gluconate 5-dehydroge 50.2 1.4E+02 0.0031 24.9 8.9 53 24-76 14-67 (259)
379 cd05276 p53_inducible_oxidored 50.2 1.6E+02 0.0034 25.0 10.4 52 17-71 135-186 (323)
380 PRK07324 transaminase; Validat 49.7 98 0.0021 27.9 8.2 52 25-77 82-133 (373)
381 PRK12562 ornithine carbamoyltr 49.6 1.2E+02 0.0025 27.3 8.4 52 25-76 158-217 (334)
382 PF12242 Eno-Rase_NADH_b: NAD( 49.4 85 0.0018 21.6 5.9 51 5-55 22-73 (78)
383 PRK07326 short chain dehydroge 49.4 1.4E+02 0.0031 24.3 9.5 31 24-54 8-38 (237)
384 PF13580 SIS_2: SIS domain; PD 49.4 38 0.00083 25.8 4.7 35 19-53 101-137 (138)
385 TIGR03877 thermo_KaiC_1 KaiC d 49.3 58 0.0013 27.4 6.2 55 17-71 16-74 (237)
386 PLN03050 pyridoxine (pyridoxam 49.2 1.7E+02 0.0036 25.0 9.1 33 24-56 62-97 (246)
387 PRK06077 fabG 3-ketoacyl-(acyl 49.1 1.3E+02 0.0028 24.9 8.4 53 24-76 8-62 (252)
388 cd08252 AL_MDR Arginate lyase 49.1 76 0.0017 27.6 7.3 48 22-72 150-198 (336)
389 PRK07366 succinyldiaminopimela 49.0 1E+02 0.0022 27.9 8.2 89 19-109 89-179 (388)
390 PRK07904 short chain dehydroge 48.9 1E+02 0.0022 25.9 7.8 51 24-74 10-64 (253)
391 PRK04284 ornithine carbamoyltr 48.9 1.2E+02 0.0027 27.1 8.4 58 17-76 151-216 (332)
392 PRK08085 gluconate 5-dehydroge 48.7 1.6E+02 0.0034 24.5 9.2 53 24-76 11-64 (254)
393 PRK10538 malonic semialdehyde 48.6 1.6E+02 0.0034 24.5 9.3 49 24-75 2-51 (248)
394 PRK08264 short chain dehydroge 48.4 99 0.0021 25.4 7.5 31 24-54 8-39 (238)
395 PRK07814 short chain dehydroge 48.1 1.5E+02 0.0032 24.9 8.7 53 23-75 11-64 (263)
396 PRK06463 fabG 3-ketoacyl-(acyl 48.0 1.6E+02 0.0035 24.5 11.0 68 24-94 9-76 (255)
397 PRK05476 S-adenosyl-L-homocyst 47.9 62 0.0013 30.1 6.6 46 24-72 213-258 (425)
398 PRK07231 fabG 3-ketoacyl-(acyl 47.8 1.6E+02 0.0034 24.3 9.5 32 24-55 7-38 (251)
399 cd08263 Zn_ADH10 Alcohol dehyd 47.8 1.6E+02 0.0035 26.2 9.3 51 17-70 183-233 (367)
400 PTZ00377 alanine aminotransfer 47.7 2.2E+02 0.0047 26.7 10.4 54 24-77 139-192 (481)
401 PRK12810 gltD glutamate syntha 47.6 1E+02 0.0022 28.9 8.2 51 24-74 144-212 (471)
402 PRK01688 histidinol-phosphate 47.5 1.9E+02 0.0041 25.8 9.6 56 19-77 72-128 (351)
403 PRK06113 7-alpha-hydroxysteroi 47.5 1.7E+02 0.0036 24.4 9.1 52 24-75 13-65 (255)
404 PRK06947 glucose-1-dehydrogena 47.5 1.2E+02 0.0026 25.0 8.0 53 24-76 4-58 (248)
405 PRK07677 short chain dehydroge 47.5 1.6E+02 0.0036 24.4 8.9 53 24-76 3-56 (252)
406 PF13380 CoA_binding_2: CoA bi 47.4 85 0.0018 23.2 6.2 47 26-72 59-105 (116)
407 PRK02102 ornithine carbamoyltr 47.4 2.1E+02 0.0046 25.6 10.0 59 16-76 150-216 (331)
408 PRK06500 short chain dehydroge 47.3 1.6E+02 0.0035 24.2 9.5 49 24-75 8-57 (249)
409 PRK07067 sorbitol dehydrogenas 47.2 1.7E+02 0.0036 24.4 9.3 32 24-55 8-39 (257)
410 PRK09257 aromatic amino acid a 47.1 1.5E+02 0.0032 26.9 9.0 50 27-76 98-148 (396)
411 TIGR01318 gltD_gamma_fam gluta 47.1 1E+02 0.0022 28.9 8.1 51 24-74 142-210 (467)
412 PRK12775 putative trifunctiona 46.8 2.4E+02 0.0052 29.5 11.2 32 24-55 431-462 (1006)
413 PRK06198 short chain dehydroge 46.5 1.7E+02 0.0037 24.3 9.5 53 24-76 8-62 (260)
414 PRK07985 oxidoreductase; Provi 46.5 1.8E+02 0.0039 25.1 9.1 53 24-76 51-106 (294)
415 KOG1205 Predicted dehydrogenas 46.3 65 0.0014 28.2 6.1 72 24-95 14-89 (282)
416 TIGR01963 PHB_DH 3-hydroxybuty 46.2 1.6E+02 0.0035 24.3 8.6 53 24-76 3-56 (255)
417 PRK08068 transaminase; Reviewe 46.1 1.1E+02 0.0024 27.6 8.0 57 19-77 91-147 (389)
418 TIGR03540 DapC_direct LL-diami 46.1 1.2E+02 0.0025 27.3 8.2 52 25-77 93-144 (383)
419 PRK09072 short chain dehydroge 46.1 1.6E+02 0.0035 24.7 8.6 32 24-55 7-38 (263)
420 PRK06138 short chain dehydroge 46.0 1.7E+02 0.0037 24.1 9.1 70 24-94 7-78 (252)
421 PRK05872 short chain dehydroge 46.0 1.9E+02 0.0041 24.9 9.2 68 23-94 10-82 (296)
422 PF00208 ELFV_dehydrog: Glutam 45.8 86 0.0019 26.7 6.7 52 4-55 12-64 (244)
423 PRK06200 2,3-dihydroxy-2,3-dih 45.8 1.8E+02 0.0039 24.3 9.3 67 24-94 8-77 (263)
424 PTZ00075 Adenosylhomocysteinas 45.8 1.6E+02 0.0034 27.9 8.9 90 24-140 255-344 (476)
425 PRK15454 ethanol dehydrogenase 45.7 93 0.002 28.5 7.4 22 118-142 98-119 (395)
426 TIGR02415 23BDH acetoin reduct 45.7 1.7E+02 0.0037 24.1 9.0 53 24-76 2-55 (254)
427 PLN02583 cinnamoyl-CoA reducta 45.5 1.2E+02 0.0026 26.2 7.9 33 23-55 7-39 (297)
428 PRK06567 putative bifunctional 45.4 1.8E+02 0.0038 30.4 9.7 31 24-54 384-414 (1028)
429 PRK07774 short chain dehydroge 45.3 1.7E+02 0.0038 24.1 9.3 32 24-55 8-39 (250)
430 cd08232 idonate-5-DH L-idonate 45.3 1E+02 0.0022 27.0 7.5 48 21-71 165-212 (339)
431 cd06268 PBP1_ABC_transporter_L 45.3 1.8E+02 0.0039 24.2 15.3 148 8-166 57-227 (298)
432 PRK01713 ornithine carbamoyltr 45.2 93 0.002 27.9 7.1 52 25-76 158-217 (334)
433 PF02887 PK_C: Pyruvate kinase 45.2 1.2E+02 0.0026 22.2 7.1 66 26-95 21-87 (117)
434 PLN02494 adenosylhomocysteinas 45.1 71 0.0015 30.2 6.5 90 24-140 255-344 (477)
435 cd08273 MDR8 Medium chain dehy 45.1 2E+02 0.0044 24.8 9.7 52 17-72 135-186 (331)
436 TIGR01064 pyruv_kin pyruvate k 44.9 1.6E+02 0.0034 27.9 8.9 22 34-55 361-382 (473)
437 PRK09291 short chain dehydroge 44.9 99 0.0021 25.7 7.1 32 24-55 4-35 (257)
438 PRK11658 UDP-4-amino-4-deoxy-L 44.8 70 0.0015 29.0 6.5 53 25-77 50-102 (379)
439 PRK12749 quinate/shikimate deh 44.7 1.4E+02 0.0031 26.1 8.1 32 25-56 126-157 (288)
440 PRK12745 3-ketoacyl-(acyl-carr 44.7 1.8E+02 0.0039 24.1 9.4 53 24-76 4-58 (256)
441 cd01534 4RHOD_Repeat_3 Member 44.6 53 0.0011 22.9 4.6 33 24-57 58-90 (95)
442 PRK06180 short chain dehydroge 44.4 1.9E+02 0.0042 24.4 8.9 31 24-54 6-36 (277)
443 PRK07060 short chain dehydroge 44.4 1.3E+02 0.0029 24.6 7.8 51 24-77 11-62 (245)
444 cd08236 sugar_DH NAD(P)-depend 44.4 2.2E+02 0.0047 24.9 10.4 51 16-70 154-205 (343)
445 PRK13984 putative oxidoreducta 44.3 1E+02 0.0022 29.9 7.9 51 24-74 284-352 (604)
446 TIGR03537 DapC succinyldiamino 44.3 1.5E+02 0.0033 26.3 8.5 52 25-77 62-116 (350)
447 PRK07200 aspartate/ornithine c 44.3 98 0.0021 28.5 7.2 45 32-76 204-254 (395)
448 KOG3857 Alcohol dehydrogenase, 44.0 87 0.0019 28.3 6.5 82 56-142 56-140 (465)
449 TIGR01317 GOGAT_sm_gam glutama 44.0 1.1E+02 0.0024 28.9 7.8 51 24-74 144-212 (485)
450 TIGR03845 sulfopyru_alph sulfo 43.7 1.6E+02 0.0034 23.1 10.0 28 26-53 62-91 (157)
451 PRK13581 D-3-phosphoglycerate 43.6 1.6E+02 0.0035 28.1 8.9 104 24-151 141-246 (526)
452 PHA02542 41 41 helicase; Provi 43.5 2.9E+02 0.0063 26.1 11.3 40 17-56 185-228 (473)
453 PRK12859 3-ketoacyl-(acyl-carr 43.5 1.7E+02 0.0036 24.5 8.3 71 24-94 8-93 (256)
454 PRK11749 dihydropyrimidine deh 43.4 1.1E+02 0.0025 28.4 7.8 52 24-75 274-331 (457)
455 PRK06202 hypothetical protein; 43.1 30 0.00066 28.9 3.6 37 130-166 63-99 (232)
456 KOG1198 Zinc-binding oxidoredu 42.8 2E+02 0.0044 25.9 9.0 53 18-73 154-206 (347)
457 TIGR01264 tyr_amTase_E tyrosin 42.8 1.9E+02 0.004 26.3 9.0 52 25-77 97-148 (401)
458 KOG1210 Predicted 3-ketosphing 42.8 2.4E+02 0.0052 25.2 9.0 32 25-56 36-67 (331)
459 PRK12414 putative aminotransfe 42.7 1.5E+02 0.0032 26.8 8.2 52 25-77 92-143 (384)
460 PRK15063 isocitrate lyase; Pro 42.7 1.7E+02 0.0037 27.2 8.4 66 69-137 277-348 (428)
461 PRK05839 hypothetical protein; 42.5 2.5E+02 0.0055 25.2 10.0 57 19-77 81-138 (374)
462 PRK08265 short chain dehydroge 42.4 2E+02 0.0044 24.0 9.6 49 24-75 8-57 (261)
463 PRK15407 lipopolysaccharide bi 42.3 1.9E+02 0.004 27.0 8.9 54 24-77 79-140 (438)
464 PRK09545 znuA high-affinity zi 42.3 1.3E+02 0.0027 26.7 7.5 93 24-125 204-306 (311)
465 PRK08153 histidinol-phosphate 42.2 2.5E+02 0.0055 25.1 10.1 51 25-77 86-137 (369)
466 PF12000 Glyco_trans_4_3: Gkyc 42.2 53 0.0011 26.4 4.6 41 116-162 55-95 (171)
467 PF13450 NAD_binding_8: NAD(P) 42.2 45 0.00098 22.0 3.6 27 30-56 3-29 (68)
468 TIGR03865 PQQ_CXXCW PQQ-depend 41.9 1.4E+02 0.003 23.6 7.0 42 20-61 114-156 (162)
469 PF06745 KaiC: KaiC; InterPro 41.8 51 0.0011 27.3 4.7 55 17-71 14-73 (226)
470 TIGR01831 fabG_rel 3-oxoacyl-( 41.4 1.9E+02 0.0041 23.7 8.2 51 26-76 2-54 (239)
471 PRK07576 short chain dehydroge 41.2 2.2E+02 0.0047 24.0 9.0 53 24-76 11-64 (264)
472 PRK03515 ornithine carbamoyltr 41.1 1.2E+02 0.0025 27.4 7.1 52 25-76 158-217 (336)
473 cd08176 LPO Lactadehyde:propan 41.1 1.3E+02 0.0028 27.4 7.5 95 47-149 5-104 (377)
474 cd06270 PBP1_GalS_like Ligand 41.0 2.1E+02 0.0046 23.8 17.6 33 128-162 177-213 (268)
475 PRK06290 aspartate aminotransf 40.9 1.7E+02 0.0036 26.9 8.3 52 25-77 108-159 (410)
476 PTZ00433 tyrosine aminotransfe 40.7 1.5E+02 0.0032 27.1 8.0 52 25-77 106-157 (412)
477 cd06297 PBP1_LacI_like_12 Liga 40.6 2.2E+02 0.0047 23.8 17.9 33 128-162 180-216 (269)
478 cd01137 PsaA Metal binding pro 40.5 1.5E+02 0.0032 25.8 7.6 63 24-95 178-248 (287)
479 PF00290 Trp_syntA: Tryptophan 40.5 2.4E+02 0.0052 24.3 10.7 91 4-101 72-169 (259)
480 PF12831 FAD_oxidored: FAD dep 40.5 40 0.00087 31.2 4.2 31 26-56 2-32 (428)
481 PRK07392 threonine-phosphate d 40.3 1.2E+02 0.0026 27.1 7.2 51 25-77 76-126 (360)
482 cd01076 NAD_bind_1_Glu_DH NAD( 40.3 1.8E+02 0.004 24.3 7.9 51 4-54 12-62 (227)
483 PF11814 DUF3335: Peptidase_C3 40.2 79 0.0017 26.3 5.3 32 25-56 44-77 (207)
484 cd08247 AST1_like AST1 is a cy 40.0 1.2E+02 0.0025 26.9 7.0 52 18-72 148-200 (352)
485 PLN03026 histidinol-phosphate 39.9 1.6E+02 0.0034 26.6 8.0 83 25-108 105-188 (380)
486 cd01011 nicotinamidase Nicotin 39.9 1.9E+02 0.0042 23.4 7.8 50 24-73 140-196 (196)
487 PRK12770 putative glutamate sy 39.8 1.4E+02 0.0031 26.6 7.6 52 24-75 173-230 (352)
488 PRK12747 short chain dehydroge 39.7 2E+02 0.0043 23.8 8.2 52 24-75 6-59 (252)
489 PRK09754 phenylpropionate diox 39.7 1.6E+02 0.0035 26.7 8.1 32 25-56 146-177 (396)
490 PLN02253 xanthoxin dehydrogena 39.7 2E+02 0.0043 24.3 8.3 31 24-54 20-50 (280)
491 smart00460 TGc Transglutaminas 39.5 43 0.00092 21.6 3.2 26 29-54 7-32 (68)
492 cd08187 BDH Butanol dehydrogen 39.4 1.6E+02 0.0035 26.8 7.9 31 47-77 6-36 (382)
493 PRK10624 L-1,2-propanediol oxi 39.4 1.4E+02 0.0031 27.1 7.6 18 128-147 87-104 (382)
494 PRK07775 short chain dehydroge 39.4 2.4E+02 0.0051 23.9 9.3 53 24-76 12-65 (274)
495 PRK01438 murD UDP-N-acetylmura 39.2 1.4E+02 0.003 28.0 7.7 50 25-74 18-69 (480)
496 PRK08642 fabG 3-ketoacyl-(acyl 39.2 2.2E+02 0.0047 23.4 9.6 32 24-55 7-38 (253)
497 PRK15409 bifunctional glyoxyla 39.2 1.9E+02 0.0042 25.7 8.2 104 24-151 146-252 (323)
498 PRK05650 short chain dehydroge 39.2 2.3E+02 0.0051 23.8 8.9 53 24-76 2-55 (270)
499 PLN02231 alanine transaminase 39.1 3.6E+02 0.0078 25.9 10.9 52 25-76 193-244 (534)
500 PRK08361 aspartate aminotransf 38.9 1.7E+02 0.0037 26.4 8.0 52 25-77 95-146 (391)
No 1
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=9.5e-63 Score=421.00 Aligned_cols=257 Identities=60% Similarity=0.991 Sum_probs=244.7
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
+|||.|.+++.+|+++|.|+||. +||++||||+|+++|++|+.+|+++++|||++++.+|+++|++|||+|+.++...+
T Consensus 41 vKDR~A~~mI~~Ae~~G~l~pG~-tIVE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g 119 (300)
T COG0031 41 VKDRIALYMIEDAEKRGLLKPGG-TIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPG 119 (300)
T ss_pred hhHHHHHHHHHHHHHcCCCCCCC-EEEEcCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCC
Confidence 59999999999999999999995 79999999999999999999999999999999999999999999999999998444
Q ss_pred -hHHHHHHHHHHHHhCCC-ccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEE
Q 023695 81 -MKGAVQKAEEILAKTPN-AYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKL 158 (278)
Q Consensus 81 -~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~v 158 (278)
+..+.+++++++++.|+ .+|.+||+||.|+.+||.+++.||++|+++.+|+||+++|||||++|++++||+.+|++++
T Consensus 120 ~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~EI~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~i 199 (300)
T COG0031 120 NMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPEIWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRI 199 (300)
T ss_pred chHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHHHHHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEE
Confidence 78899999999999888 7778899999999999999999999999888999999999999999999999999999999
Q ss_pred EEEecCCCCcccCCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHh
Q 023695 159 YGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAK 238 (278)
Q Consensus 159 igV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~ 238 (278)
++|||++|+.+..+. .++.++||+.+++|..++.+.+|+++.|+|+++++++|+|+++||+++++|||+++++++++++
T Consensus 200 v~vdP~~S~~~~~G~-g~~~i~GIG~~~ip~~~~~~~iD~v~~V~d~~A~~~~r~La~~eGilvG~SsGA~~~aa~~~a~ 278 (300)
T COG0031 200 VAVDPEGSVLLSGGE-GPHKIEGIGAGFVPENLDLDLIDEVIRVSDEEAIATARRLAREEGLLVGISSGAALAAALKLAK 278 (300)
T ss_pred EEECCCCCcccCCCC-CCcccCCCCCCcCCcccccccCceEEEECHHHHHHHHHHHHHHhCeeecccHHHHHHHHHHHHH
Confidence 999999998887655 8899999999999988999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCeEEEEecCCCcCCcc
Q 023695 239 RPENAGKLIVVIFPSFGERYLS 260 (278)
Q Consensus 239 ~~~~~~~~vv~i~~~gG~~~~~ 260 (278)
+.. ++++||+|+||+|+||+|
T Consensus 279 ~~~-~g~~IVti~pD~G~RYls 299 (300)
T COG0031 279 ELP-AGKTIVTILPDSGERYLS 299 (300)
T ss_pred hcC-CCCeEEEEECCCcccccC
Confidence 874 589999999999999998
No 2
>PLN02565 cysteine synthase
Probab=100.00 E-value=7.1e-62 Score=429.84 Aligned_cols=278 Identities=87% Similarity=1.320 Sum_probs=258.7
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||+|.++|..+.++|.+.||.+.||++|+||||+|+|++|+++|++|+||||+++++.|+++|+.|||+|+.+++..+
T Consensus 45 fKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~ 124 (322)
T PLN02565 45 VKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRIILLAFGAELVLTDPAKG 124 (322)
T ss_pred hHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCC
Confidence 89999999999999999999987789999999999999999999999999999999999999999999999999987545
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++.+++++++||+||.|+..||+|+|+||++|+++.||+||+|+|+||+++|++++||+.+|++|||+
T Consensus 125 ~~~~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~Ei~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~ 204 (322)
T PLN02565 125 MKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPEIWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYG 204 (322)
T ss_pred cHHHHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEE
Confidence 67888999999887667899999999998888999999999999966799999999999999999999999999999999
Q ss_pred EecCCCCcccCCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcC
Q 023695 161 IEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 240 (278)
Q Consensus 161 V~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~ 240 (278)
|||++++++..+++.++.+++++.+..|..+..+.+|+.+.|+|+|++++++.|++++|+++||+||+++++++++++..
T Consensus 205 Vep~~s~~~~~g~~~~~~~~glg~~~~~~~~~~~~vd~~v~V~d~ea~~a~~~l~~~~gi~vg~ssga~laaa~~~a~~~ 284 (322)
T PLN02565 205 VEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVDLLDEVVQVSSDEAIETAKLLALKEGLLVGISSGAAAAAAIKIAKRP 284 (322)
T ss_pred EecCCCccccCCCCCCccCCCCCCCCCCCcCCHhHCCEEEEECHHHHHHHHHHHHHHhCcEEeccHHHHHHHHHHHHHhc
Confidence 99999998887777778889998877777777788999999999999999999999999999999999999999999876
Q ss_pred CCCCCeEEEEecCCCcCCcchhhcHHHHHHhhcccccC
Q 023695 241 ENAGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFEA 278 (278)
Q Consensus 241 ~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~~~~~~~ 278 (278)
..++++||+|++|+|.||+++.+|+.+.....+|+||.
T Consensus 285 ~~~~~~vV~v~~d~G~ky~~~~~~~~~~~~~~~~~~~~ 322 (322)
T PLN02565 285 ENAGKLIVVIFPSFGERYLSSVLFESVKKEAENMVFEP 322 (322)
T ss_pred CCCCCeEEEEECCCccccCCchhhHHHHHHHhcCccCC
Confidence 55678999999999999999999999999999999983
No 3
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=2.4e-60 Score=425.93 Aligned_cols=277 Identities=61% Similarity=1.041 Sum_probs=255.8
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.++|.+++++|.++||.++||++|+||||+|+|++|+++|++|+||||+.++..|+.+|+.|||+|+.+++..+
T Consensus 89 ~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA~~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~~~~ 168 (368)
T PLN02556 89 IKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLAFMAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKG 168 (368)
T ss_pred hHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCC
Confidence 79999999999999999999998889999999999999999999999999999999999999999999999999986444
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
+...++.+++++++.++++|++||+||.++..||.++++||++|+.+.||+||+|+|||||++|+++++|+.+|++|||+
T Consensus 169 ~~~~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~ttg~EI~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVig 248 (368)
T PLN02556 169 MGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGPEIWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYG 248 (368)
T ss_pred ccHHHHHHHHHHHhcCCCCccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEE
Confidence 55778888888888778899999999999667999999999999866899999999999999999999999999999999
Q ss_pred EecCCCCcccCCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcC
Q 023695 161 IEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 240 (278)
Q Consensus 161 V~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~ 240 (278)
|||++++.+..+++..+.+++++.+..|..++.+++|+++.|+|+|++++++.|++++|+++||+||++++++++++++.
T Consensus 249 Vep~~~~~~~~g~~~~~~i~g~g~~~~p~~~~~~~~d~~v~Vsd~ea~~a~r~l~~~eGi~vg~ssgA~~~aal~~a~~~ 328 (368)
T PLN02556 249 VEPAESNVLNGGKPGPHHITGNGVGFKPDILDMDVMEKVLEVSSEDAVNMARELALKEGLMVGISSGANTVAALRLAKMP 328 (368)
T ss_pred EeeCCCccccCCCCCCeeeeeccCCCCccccchhhCCeEEEECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHHhhhc
Confidence 99999988877777777778888776677777889999999999999999999999999999999999999999988776
Q ss_pred CCCCCeEEEEecCCCcCCcchhhcHHHHHHhhccccc
Q 023695 241 ENAGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 277 (278)
Q Consensus 241 ~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~~~~~~ 277 (278)
..++++||+|++|+|.||+|+.+|++|+++.++|++|
T Consensus 329 ~~~~~~IV~v~~d~g~kY~~~~~~~~~~~~~~~~~~~ 365 (368)
T PLN02556 329 ENKGKLIVTVHPSFGERYLSSVLFQELRKEAENMQPV 365 (368)
T ss_pred cCCcCEEEEEECCCCcccCChhhhHHHHHHHHhcCCc
Confidence 4568899999999999999999999999999999887
No 4
>PLN00011 cysteine synthase
Probab=100.00 E-value=1.2e-58 Score=410.36 Aligned_cols=277 Identities=69% Similarity=1.084 Sum_probs=251.6
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.+++++|.+.||.++||++|+||||+|+|++|+.+|++|+||||+++++.|+++++.|||+|+.++....
T Consensus 47 ~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~ 126 (323)
T PLN00011 47 VKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNTGIGLACIGAARGYKVILVMPSTMSLERRIILRALGAEVHLTDQSIG 126 (323)
T ss_pred cchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCcC
Confidence 89999999999999999999987789999999999999999999999999999999999999999999999999996444
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
.++.++.+++++++.+++++++||+|+.++..||.++++||++|+.++||+||+|+|+|||++|++++||+.+|+++||+
T Consensus 127 ~~~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~~t~~~EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvig 206 (323)
T PLN00011 127 LKGMLEKAEEILSKTPGGYIPQQFENPANPEIHYRTTGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCV 206 (323)
T ss_pred hHHHHHHHHHHHHhCCCeEEeccccCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEE
Confidence 45667778888887667889999999988777999999999999966899999999999999999999999999999999
Q ss_pred EecCCCCcccCCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcC
Q 023695 161 IEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 240 (278)
Q Consensus 161 V~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~ 240 (278)
|||++++.+..+++..+.++|++.+..|..+....+|+.+.|+|+|+++++++|++++|+++||+||++++++++++++.
T Consensus 207 Ve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~Gi~~~~ssga~laaa~~~~~~~ 286 (323)
T PLN00011 207 VEPVESAVLSGGQPGPHLIQGIGSGIIPFNLDLTIVDEIIQVTGEEAIETAKLLALKEGLLVGISSGAAAAAALKVAKRP 286 (323)
T ss_pred EecCCCcccCCCCCCCCCCCCCCCCCCCcccChhhCCeEEEECHHHHHHHHHHHHHhcCCeEcccHHHHHHHHHHHHHhc
Confidence 99999988877777777788888776677667788999999999999999999999999999999999999999988765
Q ss_pred CCCCCeEEEEecCCCcCCcchhhcHHHHHHhhccccc
Q 023695 241 ENAGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 277 (278)
Q Consensus 241 ~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~~~~~~ 277 (278)
..+++++|+|++|+|+||+|+.+|+.|+....+++.|
T Consensus 287 ~~~~~~vv~i~~d~G~ky~~~~~~~~~~~~~~~~~~~ 323 (323)
T PLN00011 287 ENAGKLIVVIFPSGGERYLSTKLFESVRYEAENLPIE 323 (323)
T ss_pred cCCCCeEEEEECCCccccCChhhhHHHHHhhhcCCCC
Confidence 4567899999999999999999999988876777654
No 5
>PLN03013 cysteine synthase
Probab=100.00 E-value=1.7e-58 Score=415.93 Aligned_cols=262 Identities=72% Similarity=1.161 Sum_probs=242.5
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||+|.++|.+++++|.++||+++||++|+||||+|+|++|+.+|++++||||+++++.|+++|+.|||+|+.+++..+
T Consensus 153 fKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~ 232 (429)
T PLN03013 153 VKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKG 232 (429)
T ss_pred cHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCCCC
Confidence 89999999999999999999997789999999999999999999999999999999999999999999999999987555
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
+.++.+.+++++++.++++|++||+||.|+.+||.|+|+||++|++++||+||+|+||||+++|++++||+.+|+++||+
T Consensus 233 ~~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVig 312 (429)
T PLN03013 233 MTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIG 312 (429)
T ss_pred hHHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEE
Confidence 67888999999888667899999999999777999999999999977899999999999999999999999999999999
Q ss_pred EecCCCCcccCCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcC
Q 023695 161 IEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 240 (278)
Q Consensus 161 V~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~ 240 (278)
|||++++.+.++++.++.++|++.+.+|..+++.++|+++.|+|+|+++++++|++++|+++||+||++++++++++++.
T Consensus 313 Vep~gs~~l~~g~~~~~~i~Glg~~~ip~~~~~~~vD~vv~VsD~ea~~a~r~La~~eGi~vG~SSGAalaAalkla~~~ 392 (429)
T PLN03013 313 VEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRP 392 (429)
T ss_pred EEeCCCchhhCCCCCCcccCcccCCcCCHhHHHHhccEEEEECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHHhhhc
Confidence 99999988877778888889999888888888889999999999999999999999999999999999999999998765
Q ss_pred CCCCCeE-EEEecCCCcCCcchh
Q 023695 241 ENAGKLI-VVIFPSFGERYLSSV 262 (278)
Q Consensus 241 ~~~~~~v-v~i~~~gG~~~~~~~ 262 (278)
..+++++ |+|++|+|++|.++.
T Consensus 393 ~~~g~~IVv~i~~d~g~~Y~~~~ 415 (429)
T PLN03013 393 ENAGKLIAVSLFASGRDIYTPRC 415 (429)
T ss_pred cCCCCEEEEEEcCCCchhchhhh
Confidence 5556665 667778999999984
No 6
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=4.3e-59 Score=396.31 Aligned_cols=274 Identities=68% Similarity=1.109 Sum_probs=258.9
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
.|||.++.||.+|+.+|.++||.++|+++||||+|+++|++|+..|++|+++||++.+.+|+..|+++|++|+.++....
T Consensus 82 vKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGigLA~~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~ 161 (362)
T KOG1252|consen 82 VKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIGLAYMAALRGYKCIITMPEKMSKEKRILLRALGAEIILTPPAAG 161 (362)
T ss_pred HHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHHHHHHHHHcCceEEEEechhhhHHHHHHHHHcCCEEEecChHHc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999997655
Q ss_pred hHH---HHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcE
Q 023695 81 MKG---AVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIK 157 (278)
Q Consensus 81 ~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~ 157 (278)
+.. +...+.++..+.|+.+.++||.||.|+..||.++++||++|+.+++|.+|.++|||||++|+.+++|+.+|+++
T Consensus 162 ~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~hy~ttg~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~k 241 (362)
T KOG1252|consen 162 MKGPESAIGKAEELLNKTPNAYILDQFHNPGNPLAHYETTGPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIK 241 (362)
T ss_pred cCChHHHHHHHHHHHHhCCChHHHHHhcCCCCcccccccccHHHHHHhcCCCCEEEeccCCCceeechhHHHHHhCCCCE
Confidence 555 88889999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred EEEEecCCCCcccCCCCCC--ccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHH
Q 023695 158 LYGIEPTESPVLSGGKPGP--HKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIE 235 (278)
Q Consensus 158 vigV~~~~~~~~~~~~~~~--~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~ 235 (278)
|++|+|..|..+....+++ +.++|||.++.|..++...+|+.+.+.++|++.+.++|+.+||+++++|||++++++++
T Consensus 242 Vv~vdp~~S~~~~~~~~g~~~~~I~GIGyg~~p~~ld~~~vd~~~~~~~d~A~~~Ar~La~eeGll~G~SSGan~~aAl~ 321 (362)
T KOG1252|consen 242 VVGVDPQESIVLSGGKPGPTFHKIQGIGYGFIPTTLDTKLVDEVLKVSSDEAIEMARRLALEEGLLVGISSGANVAAALK 321 (362)
T ss_pred EEEeCCCcceeccCCCCCCCccceeccccCcCccccchHHHHHHHHhCCHHHHHHHHHHHHhhCeeecccchHHHHHHHH
Confidence 9999999998887777777 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHHHhhcc
Q 023695 236 IAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKEAESM 274 (278)
Q Consensus 236 ~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~~~ 274 (278)
++++.+..++-+|++++|+|.+|+++.+||+|+++..++
T Consensus 322 ~a~~~en~~kliV~~~pd~ge~Y~st~L~d~w~~e~~~~ 360 (362)
T KOG1252|consen 322 LAKRPENAGKLIVVTFPDFGERYLSTFLFDEWREEAEKL 360 (362)
T ss_pred HHhccccCCcEEEEECCCcchhhhhhhhHHHHHHHHhhh
Confidence 999987666666666589999999999999999987765
No 7
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=1.7e-56 Score=393.64 Aligned_cols=263 Identities=64% Similarity=1.058 Sum_probs=239.8
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||+|++.+++..++++|.+.+| ++|+++|+||||+|+|++|+++|++|+||||+++++.|+++++.+||+|+.++++.+
T Consensus 37 ~K~R~a~~~~~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~ 115 (299)
T TIGR01136 37 VKDRIALSMIEDAEKRGLLKPG-DTIIEATSGNTGIALAMVAAAKGYKLILTMPETMSLERRKLLRAYGAELILTPAEEG 115 (299)
T ss_pred ccHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCC
Confidence 8999999999999999998877 469999999999999999999999999999999999999999999999999997545
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++.+++++++||+|+.++..||+++++||++|+++.||+||+|+|+||+++|++.+||+.+|.+|||+
T Consensus 116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ 195 (299)
T TIGR01136 116 MKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDTDGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVA 195 (299)
T ss_pred hHHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhcCCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEE
Confidence 78889999999887646789999999998788999999999999966799999999999999999999999999999999
Q ss_pred EecCCCCcccCCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcC
Q 023695 161 IEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 240 (278)
Q Consensus 161 V~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~ 240 (278)
|||++++++...++..+.+.+++.+..++.+.++++|+.+.|+|+|++++++.|++.+|+++||+||++++++++++++.
T Consensus 196 Ve~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~e~ssaa~~a~~~~~~~~~ 275 (299)
T TIGR01136 196 VEPAESPVLSGGEPGPHKIQGIGAGFIPKILDLSLIDEVITVSDEDAIETARRLAREEGILVGISSGAAVAAALKLAKRL 275 (299)
T ss_pred EecCCCccccCCCCCCccCCCCCCCCCCccCChhhCCEEEEECHHHHHHHHHHHHHHhCceEcchHHHHHHHHHHHHHhc
Confidence 99999988876666666677787776777777888999999999999999999999999999999999999999988775
Q ss_pred CCCCCeEEEEecCCCcCCcchhhc
Q 023695 241 ENAGKLIVVIFPSFGERYLSSVLF 264 (278)
Q Consensus 241 ~~~~~~vv~i~~~gG~~~~~~~~~ 264 (278)
..++++||+|+||+|.||+++..|
T Consensus 276 ~~~~~~vv~i~~d~g~ky~~~~~~ 299 (299)
T TIGR01136 276 ENADKVIVAILPDTGERYLSTGLF 299 (299)
T ss_pred CCCCCEEEEEECCCCccccCcccC
Confidence 456889999999999999997544
No 8
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=3.9e-56 Score=391.22 Aligned_cols=261 Identities=66% Similarity=1.068 Sum_probs=236.8
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.+++++|++.+| ++|+++|+||||+|+|++|+++|++|+||||+++++.|++.|+.+||+|+.+++..+
T Consensus 36 ~K~R~a~~~l~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~Gl~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~ 114 (298)
T TIGR01139 36 VKDRIALNMIWDAEKRGLLKPG-KTIVEPTSGNTGIALAMVAAARGYKLILTMPETMSIERRKLLKAYGAELVLTPGAEG 114 (298)
T ss_pred chHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChhHHHHHHHHHHcCCeEEEEeCCccCHHHHHHHHHcCCEEEEECCCCC
Confidence 8999999999999999998877 469999999999999999999999999999999999999999999999999997544
Q ss_pred hHHHHHHHHHHHHhCCC-ccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEE
Q 023695 81 MKGAVQKAEEILAKTPN-AYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLY 159 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vi 159 (278)
+.++.+.+++++++.++ +++++||+||.++..||.++++||++|+++.||+||+|+|+||+++|++.+|++.++++|||
T Consensus 115 ~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi 194 (298)
T TIGR01139 115 MKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRDTDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIV 194 (298)
T ss_pred HHHHHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHHhCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEE
Confidence 46778888888887644 55899999999878899999999999996579999999999999999999999999999999
Q ss_pred EEecCCCCcccCCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhc
Q 023695 160 GIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKR 239 (278)
Q Consensus 160 gV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~ 239 (278)
+|||.+++.+...++..+.+++++.+..+..++...+|+++.|+|+|+++++++|++++|+++||+||++++++++++++
T Consensus 195 ~Ve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~~pssga~laa~~~~~~~ 274 (298)
T TIGR01139 195 AVEPAESPVLSGGKPGPHKIQGIGAGFIPKNLNRSVIDEVITVSDEEAIETARRLAAEEGILVGISSGAAVAAALKLAKR 274 (298)
T ss_pred EEecCCCcccCCCCCCCCCCCCCCCCCCCCccChhhCCEEEEECHHHHHHHHHHHHHhcCceEcccHHHHHHHHHHHHHh
Confidence 99999998887666666777888877677777788899999999999999999999999999999999999999998876
Q ss_pred CCCCCCeEEEEecCCCcCCcchhh
Q 023695 240 PENAGKLIVVIFPSFGERYLSSVL 263 (278)
Q Consensus 240 ~~~~~~~vv~i~~~gG~~~~~~~~ 263 (278)
.. ++++||+|+||+|.||+|+..
T Consensus 275 ~~-~~~~vv~v~~d~G~ky~~~~~ 297 (298)
T TIGR01139 275 PE-PDKLIVVILPSTGERYLSTPL 297 (298)
T ss_pred cC-CCCEEEEEECCCCccccCccc
Confidence 43 678999999999999999744
No 9
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=2e-55 Score=391.71 Aligned_cols=270 Identities=43% Similarity=0.702 Sum_probs=234.0
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCC-
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK- 79 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~- 79 (278)
||+|++.+++.+++++|+++|| ++|+++|+||||+|+|++|+++|++|+||||+++++.|+++++.+||+|+.+++..
T Consensus 43 ~K~Rga~~~v~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~~~~ 121 (330)
T PRK10717 43 VKDRAALNIIWDAEKRGLLKPG-GTIVEGTAGNTGIGLALVAAARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAAPY 121 (330)
T ss_pred chHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCccc
Confidence 8999999999999999998887 46999999999999999999999999999999999999999999999999998631
Q ss_pred -----ChHHHHHHHHHHHHhCC-CccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhC
Q 023695 80 -----GMKGAVQKAEEILAKTP-NAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN 153 (278)
Q Consensus 80 -----~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~ 153 (278)
..+.+.+.++++.++.+ +++|++||+||.++..||.++++||++|++..||+||+|+|+||+++|++++||+.+
T Consensus 122 ~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~ 201 (330)
T PRK10717 122 ANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAHYETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETN 201 (330)
T ss_pred ccccchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHHHHHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhC
Confidence 12233444555544432 688999999999867899999999999997679999999999999999999999999
Q ss_pred CCcEEEEEecCCCCccc---CCC---CCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHH
Q 023695 154 PNIKLYGIEPTESPVLS---GGK---PGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSG 227 (278)
Q Consensus 154 ~~~~vigV~~~~~~~~~---~~~---~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg 227 (278)
|+++||+|||++++.+. .++ ...+.+++++.+..+..+....+|+++.|+|+|++++++.|++++|+++||+||
T Consensus 202 ~~~~vi~Vep~~~~~~~~~~~g~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~vepssg 281 (330)
T PRK10717 202 PKVKIVLADPTGSALYSYYKTGELKAEGSSITEGIGQGRITANLEGAPIDDAIRIPDEEALSTAYRLLEEEGLCLGGSSG 281 (330)
T ss_pred CCCEEEEEcCCCCccccccccCCcCCCCCcccCcCCCCcCCcccChhhCCEEEEECHHHHHHHHHHHHHhcCCeEeecHH
Confidence 99999999999985432 122 234567888877666666667789999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHHHhh
Q 023695 228 GAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKEAE 272 (278)
Q Consensus 228 ~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~ 272 (278)
++++++++++++. .++++||+|+|++|+||+++++.|+|.....
T Consensus 282 a~laa~~~l~~~~-~~~~~Vv~v~~g~g~ky~~~~~~d~~~~~~~ 325 (330)
T PRK10717 282 INVAAALRLAREL-GPGHTIVTILCDSGERYQSKLFNPDFLREKG 325 (330)
T ss_pred HHHHHHHHHHHhc-CCCCEEEEEECCCchhhcccccCHHHHHhcC
Confidence 9999999987764 4678999999999999999988889888654
No 10
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=2.5e-55 Score=384.58 Aligned_cols=254 Identities=46% Similarity=0.777 Sum_probs=225.8
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.+++++|.++|| ++||++|+||||+|+|++|+.+|++|+||||+++++.|++.++.|||+|+.++...+
T Consensus 42 ~K~R~a~~~~~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~~~~ 120 (296)
T PRK11761 42 VKDRPALSMIVQAEKRGEIKPG-DTLIEATSGNTGIALAMIAAIKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQG 120 (296)
T ss_pred chhHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCC
Confidence 8999999999999999998887 469999999999999999999999999999999999999999999999999997556
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. +++|++||+|+.++..||.|+++||++|+++.+|+||+|+|+||+++|++++||+.+|++|||+
T Consensus 121 ~~~~~~~a~~l~~~~-~~~~~~~~~n~~~~~~~~~t~~~Ei~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvig 199 (296)
T PRK11761 121 MEGARDLALQMQAEG-EGKVLDQFANPDNPLAHYETTGPEIWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVG 199 (296)
T ss_pred hHHHHHHHHHHHhcc-CCEecCCCCChhhHHHHhhchHHHHHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence 788888899888875 7889999999998788999999999999966799999999999999999999999999999999
Q ss_pred EecCCCCcccCCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcC
Q 023695 161 IEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 240 (278)
Q Consensus 161 V~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~ 240 (278)
|||++++.+.+ +.++.....+..++...+|+++.|+|+|++++++.|++.+|+++||+||++++++++++++
T Consensus 200 Vep~~~~~i~g-------~~~~~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~gi~ve~ssga~laaa~~~~~~- 271 (296)
T PRK11761 200 LQPEEGSSIPG-------IRRWPEEYLPKIFDASRVDRVLDVSQQEAENTMRRLAREEGIFCGVSSGGAVAAALRIARE- 271 (296)
T ss_pred EecCCCCcCcC-------CCCCCCCcCCcccChhhCCEEEEECHHHHHHHHHHHHHHhCceEchhHHHHHHHHHHHHHH-
Confidence 99998876632 1111122233445567889999999999999999999999999999999999999998776
Q ss_pred CCCCCeEEEEecCCCcCCcchhhcH
Q 023695 241 ENAGKLIVVIFPSFGERYLSSVLFE 265 (278)
Q Consensus 241 ~~~~~~vv~i~~~gG~~~~~~~~~~ 265 (278)
.++++||+|+||+|.||+++..|+
T Consensus 272 -~~~~~vV~v~~d~g~ky~~~~~~~ 295 (296)
T PRK11761 272 -NPNAVIVAIICDRGDRYLSTGVFP 295 (296)
T ss_pred -CCCCeEEEEECCCCcccCChhccc
Confidence 357899999999999999985554
No 11
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=5.9e-55 Score=392.95 Aligned_cols=270 Identities=33% Similarity=0.518 Sum_probs=231.4
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC--
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA-- 78 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~-- 78 (278)
||||++.++|.+|+++|.++|++ +|+++||||||+|+|++|+++|++|+||||+++++.|++.|+.|||+|+.+++.
T Consensus 83 ~KdR~A~~~i~~a~~~g~~~~~g-~VveaSSGN~g~alA~~aa~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi~v~~~~~ 161 (423)
T PLN02356 83 VKDRVAVKIIEEALESGQLFPGG-VVTEGSAGSTAISLATVAPAYGCKCHVVIPDDVAIEKSQILEALGATVERVRPVSI 161 (423)
T ss_pred HHHHHHHHHHHHHHhCCccCCCC-EEEEeCCHHHHHHHHHHHHHcCCcEEEEECCCCcHHHHHHHHHcCCEEEEECCccC
Confidence 79999999999999999988875 588899999999999999999999999999999999999999999999999641
Q ss_pred ---CCh-HHHH---HHHHHHHHh--------------------------------CCCccccCCCCCCCchhhhhhchHH
Q 023695 79 ---KGM-KGAV---QKAEEILAK--------------------------------TPNAYMLQQFENPANPKIHYETTGP 119 (278)
Q Consensus 79 ---~~~-~~~~---~~a~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~g~~t~~~ 119 (278)
.++ ..+. ..+.+++++ .++.+|++||+|+.|+..|+..+|+
T Consensus 162 ~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~n~~n~~ahg~gTg~ 241 (423)
T PLN02356 162 THKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNGCISEEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGP 241 (423)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCCcEecCccCCcchHHHHHhhHHH
Confidence 122 1111 223444433 1467899999999997777766799
Q ss_pred HHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCCccc-------------CCCC----CCcccccc
Q 023695 120 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS-------------GGKP----GPHKIQGI 182 (278)
Q Consensus 120 EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~-------------~~~~----~~~~~~gl 182 (278)
||++|++++||+||+|+|||||++|++++||+.+|+++|++|||.+++.+. .++. .++.++|+
T Consensus 242 EI~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~~P~vkVigVep~~s~~~~~~~~~~~~~~s~~~G~~~~~~~~tia~Gi 321 (423)
T PLN02356 242 EIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNIKCFLIDPPGSGLFNKVTRGVMYTREEAEGRRLKNPFDTITEGI 321 (423)
T ss_pred HHHHhcCCCCCEEEeCCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccccccchhhhhhhhcCCccCCCCCeecCcC
Confidence 999999768999999999999999999999999999999999999886332 1221 25678899
Q ss_pred CCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchh
Q 023695 183 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSV 262 (278)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~ 262 (278)
+.+..|..++...+|+++.|+|+|+++++++|++++|+++||+||++++++++++++. .++++||+|+|++|.||++++
T Consensus 322 g~~~~~~~~~~~~vD~~v~Vsd~ea~~a~r~L~~~~Gl~vg~Ssaa~laaa~~la~~~-~~g~~VV~Il~d~G~kyl~~~ 400 (423)
T PLN02356 322 GINRLTQNFLMAKLDGAFRGTDKEAVEMSRYLLKNDGLFVGSSSAMNCVGAVRVAQSL-GPGHTIVTILCDSGMRHLSKF 400 (423)
T ss_pred cCCCCChhHhHHhCCcEEEECHHHHHHHHHHHHHHCCeeEeECHHHHHHHHHHHHHHh-CCCCeEEEEECCCCcchhhhh
Confidence 9887788888889999999999999999999999999999999999999999988653 368899999999999999998
Q ss_pred hcHHHHHHhh
Q 023695 263 LFESVRKEAE 272 (278)
Q Consensus 263 ~~~~~~~~~~ 272 (278)
+.++|+.+++
T Consensus 401 ~~~~w~~~~~ 410 (423)
T PLN02356 401 HDPQYLSQHG 410 (423)
T ss_pred cCHHHHHhcC
Confidence 8888887654
No 12
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=1.9e-54 Score=378.24 Aligned_cols=252 Identities=44% Similarity=0.792 Sum_probs=224.5
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.+++++|++.|+ ++|+++|+||||+|+|++|+++|++|+||||+++++.|++.|+.|||+|+.+++..+
T Consensus 38 ~K~R~a~~~v~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~ 116 (290)
T TIGR01138 38 VKDRPALSMIVEAEKRGEIKPG-DVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEG 116 (290)
T ss_pred HHHHHHHHHHHHHHHcCCCCCC-CEEEEECCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCC
Confidence 7999999999999999998887 469999999999999999999999999999999999999999999999999987545
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. +.+|++||+|+.++..||.++++||++|++++||+||+|+||||+++|++.+||+.+|++|||+
T Consensus 117 ~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~~~~~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~ 195 (290)
T TIGR01138 117 MEGARDLALELANRG-EGKLLDQFNNPDNPYAHYTSTGPEIWQQTGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVG 195 (290)
T ss_pred hHHHHHHHHHHHHhC-CCCCCCccCCcccHHHHhHhHHHHHHHHcCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEE
Confidence 788888999998886 4568999999999777899999999999976799999999999999999999999999999999
Q ss_pred EecCCCCcccCCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcC
Q 023695 161 IEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 240 (278)
Q Consensus 161 V~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~ 240 (278)
|||.+++.+.+ +.+++.+..+..++...+|+++.|+|+|+++++++|++++|+++||+||++++++++++++.
T Consensus 196 Vep~~~~~~~g-------~~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~~g~ssga~laa~~~~~~~~ 268 (290)
T TIGR01138 196 LQPEEGSSIPG-------IRRWPTEYLPGIFDASLVDRVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAAALRLAREL 268 (290)
T ss_pred EeCCCCCCccC-------CCCCCCCcCCcccChhhCcEEEEECHHHHHHHHHHHHHHhCceEcHhHHHHHHHHHHHHHHC
Confidence 99999876532 12233333344455677899999999999999999999999999999999999999987763
Q ss_pred CCCCCeEEEEecCCCcCCcchhh
Q 023695 241 ENAGKLIVVIFPSFGERYLSSVL 263 (278)
Q Consensus 241 ~~~~~~vv~i~~~gG~~~~~~~~ 263 (278)
+++++|+|+||+|.||+|+.+
T Consensus 269 --~~~~vv~v~~d~g~ky~~~~~ 289 (290)
T TIGR01138 269 --PDAVVVAIICDRGDRYLSTGV 289 (290)
T ss_pred --CCCeEEEEECCCCccccCccc
Confidence 578999999999999999744
No 13
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=4.3e-54 Score=377.18 Aligned_cols=258 Identities=60% Similarity=0.998 Sum_probs=232.2
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCC-
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK- 79 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~- 79 (278)
||+|++.++|.++.++|+++++ ++|+++|+||||+|+|++|+++|++|+||||+++++.|+++++.+||+|+.++...
T Consensus 32 ~K~R~a~~~l~~a~~~g~~~~~-~~vv~~SsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~Ga~v~~~~~~~~ 110 (291)
T cd01561 32 VKDRIALYMIEDAEKRGLLKPG-TTIIEPTSGNTGIGLAMVAAAKGYRFIIVMPETMSEEKRKLLRALGAEVILTPEAEA 110 (291)
T ss_pred chHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCc
Confidence 8999999999999999987776 46999999999999999999999999999999999999999999999999999742
Q ss_pred -ChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEE
Q 023695 80 -GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKL 158 (278)
Q Consensus 80 -~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~v 158 (278)
+.+++.+.+++++++.++++|++||+||.++..|++|+++||.+|++..||+||+|+|+||+++|++.+|++.+|.++|
T Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~g~~~t~~~Ei~~ql~~~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~v 190 (291)
T cd01561 111 DGMKGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDGKVDAFVAGVGTGGTITGVARYLKEKNPNVRI 190 (291)
T ss_pred CCHHHHHHHHHHHHhhCCCcEEecCCCCchHHHHHHHHHHHHHHHHcCCCCCEEEEeCChHHHHHHHHHHHHHhCCCCEE
Confidence 3478888899888876679999999999985444459999999999667999999999999999999999999999999
Q ss_pred EEEecCCCCcccCCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHh
Q 023695 159 YGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAK 238 (278)
Q Consensus 159 igV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~ 238 (278)
|+|||++++++.......+.+++++.+..+..+...++|+++.|+|+|++++++.|++++|+++||++|+++++++++++
T Consensus 191 i~Ve~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~epssa~a~a~~~~~~~ 270 (291)
T cd01561 191 VGVDPVGSVLFSGGPPGPHKIEGIGAGFIPENLDRSLIDEVVRVSDEEAFAMARRLAREEGLLVGGSSGAAVAAALKLAK 270 (291)
T ss_pred EEEecCCCcccCCCCCCCCcCCCCCCCCCCCccCchhCceeEEECHHHHHHHHHHHHHHhCeeEcccHHHHHHHHHHHHH
Confidence 99999999887544455667788888766777777889999999999999999999999999999999999999999887
Q ss_pred cCCCCCCeEEEEecCCCcCCcc
Q 023695 239 RPENAGKLIVVIFPSFGERYLS 260 (278)
Q Consensus 239 ~~~~~~~~vv~i~~~gG~~~~~ 260 (278)
+.. ++++||+|+|++|.||+|
T Consensus 271 ~~~-~~~~vv~v~~~~g~ky~~ 291 (291)
T cd01561 271 RLG-PGKTIVTILPDSGERYLS 291 (291)
T ss_pred hcC-CCCeEEEEECCCccccCC
Confidence 753 678999999999999986
No 14
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=5.4e-54 Score=398.49 Aligned_cols=270 Identities=40% Similarity=0.688 Sum_probs=236.6
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||+|+|.+++.+++++|++.+| ++|+++|+||||+|+|++|+++|++|++|||+++++.|+..++.|||+|+.+++...
T Consensus 41 ~K~R~a~~~l~~a~~~g~~~~g-~~vv~~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~ 119 (454)
T TIGR01137 41 VKDRIALRMIEDAEASGRLKPG-DTIIEPTSGNTGIGLALVAAIKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAA 119 (454)
T ss_pred hHHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHHHHHHcCCeEEEEeCCCcCHHHHHHHHHCCCEEEEcCCccC
Confidence 7999999999999999999888 579999999999999999999999999999999999999999999999999986322
Q ss_pred hH---HHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcE
Q 023695 81 MK---GAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIK 157 (278)
Q Consensus 81 ~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~ 157 (278)
++ ...+.+++++++.++.+|++||+|+.++..||.++|+||++|+++.||+||+|+|||||++|++.+||+.+|.++
T Consensus 120 ~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~ 199 (454)
T TIGR01137 120 FDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTGPEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCR 199 (454)
T ss_pred CCchHHHHHHHHHHHHhCCCcEecccCCChhhHHHHHHhhHHHHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCE
Confidence 32 235667778777556788999999998778999999999999976799999999999999999999999999999
Q ss_pred EEEEecCCCCcccCCC------CCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHH
Q 023695 158 LYGIEPTESPVLSGGK------PGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAA 231 (278)
Q Consensus 158 vigV~~~~~~~~~~~~------~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~a 231 (278)
||+|||++++.. .+. ...+.++|++.+..|..++.+++|+.+.|+|+|++++++.|++++|+++||+||++++
T Consensus 200 vi~ve~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~~V~~~e~~~a~~~l~~~~gi~~~~ssg~~~a 278 (454)
T TIGR01137 200 IVGADPEGSILA-QPENLNKTGRTPYKVEGIGYDFIPTVLDRKVVDEWIKTDDKESFKMARRLIKEEGLLVGGSSGSAVV 278 (454)
T ss_pred EEEEecCCCccc-CCCcccCCCCCCccCCCCCCCCCCCcCCchhCCeEEEECHHHHHHHHHHHHHHhCccCcHHHHHHHH
Confidence 999999998633 221 1234567887665677777888999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHHHhh
Q 023695 232 AAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKEAE 272 (278)
Q Consensus 232 a~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~ 272 (278)
++++++++...+++++|+++||+|.||+++.++++|....+
T Consensus 279 a~~~~~~~~~~~~~~vv~~~~d~g~~y~~~~~~~~w~~~~~ 319 (454)
T TIGR01137 279 AALKAAEDELTEDQVIVVLLPDSIRNYMTKFLNDEWMKDNG 319 (454)
T ss_pred HHHHHHHhhcCCCCEEEEEECCCCccccCcccChHHHHhcC
Confidence 99998874224578999999999999999999999887654
No 15
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-53 Score=368.45 Aligned_cols=259 Identities=24% Similarity=0.312 Sum_probs=227.5
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||.|+|++.+..+.+++..+ ..||++|+||||+++|++|+++|+|++||||.+++..|++.++.||++|++++. +
T Consensus 55 FK~RGA~n~i~~Ls~e~~~~---~gViaaSaGNHaQGvA~aa~~lGi~a~IvMP~~tp~~Kv~a~r~~GaeVil~g~--~ 129 (347)
T COG1171 55 FKIRGAYNKLSSLSEEEERA---AGVIAASAGNHAQGVAYAAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHGD--N 129 (347)
T ss_pred chhhhHHHHHHhcChhhhhc---CceEEecCCcHHHHHHHHHHHhCCCEEEEecCCCcHHHHHHHHhcCCEEEEECC--C
Confidence 89999999999976443222 469999999999999999999999999999999999999999999999999996 7
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
|+++.+.+++++++. ++.|++||++|+. ++||+|++.||++|++..||+||||+|+||+++|++.++|...|.++|||
T Consensus 130 ~dda~~~a~~~a~~~-G~~~i~pfD~p~v-iAGQGTi~lEileq~~~~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIG 207 (347)
T COG1171 130 FDDAYAAAEELAEEE-GLTFVPPFDDPDV-IAGQGTIALEILEQLPDLPDAVFVPVGGGGLISGIATALKALSPEIKVIG 207 (347)
T ss_pred HHHHHHHHHHHHHHc-CCEEeCCCCCcce-eecccHHHHHHHHhccccCCEEEEecCccHHHHHHHHHHHHhCCCCeEEE
Confidence 899999999999997 8999999999998 89999999999999965579999999999999999999999999999999
Q ss_pred EecCCCCccc----CCC-C-----CCccccccCCCC---CcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHH
Q 023695 161 IEPTESPVLS----GGK-P-----GPHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSG 227 (278)
Q Consensus 161 V~~~~~~~~~----~~~-~-----~~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg 227 (278)
|||+++++++ .|+ + ..+.++|++... .++.+.++++|+++.|+|+|+.++|+++++.+++++||+++
T Consensus 208 VEp~~a~~~~~Sl~~G~~~~~~~~~~tiaDG~av~~~g~~tf~i~~~~vd~~v~V~e~ei~~am~~l~~~~~iI~EpaGA 287 (347)
T COG1171 208 VEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVKRPGDLTFEILRELVDDIVLVDEDEICAAMRDLFERTKIIAEPAGA 287 (347)
T ss_pred EeeCCChHHHHHHHcCCceeecCCCCccccccccCCCCHHHHHHHHHcCCcEEEECHHHHHHHHHHHHhcCCeeccccHH
Confidence 9999999764 342 2 234567777543 47778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHHH
Q 023695 228 GAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 270 (278)
Q Consensus 228 ~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 270 (278)
+++++++....+. .+++++++|+ +|||-++ ..|.+.++.
T Consensus 288 lalAal~~~~~~~-~~g~~v~~il-SGgN~d~--~~~~~v~~~ 326 (347)
T COG1171 288 LALAALLAGKIEP-LQGKTVVVIL-SGGNIDF--ERLAEVLER 326 (347)
T ss_pred HHHHHHHhhhhhh-cCCCeEEEEe-cCCCCCH--HHHHHHHhc
Confidence 9999999876664 5677788888 9999444 456655554
No 16
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=3.7e-51 Score=378.83 Aligned_cols=259 Identities=24% Similarity=0.305 Sum_probs=224.2
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||+|+|.+.+..+.++.. + +.||++|+||||+++|++|+++|++|+||||++++..|+..++.|||+|+.+++ +
T Consensus 67 fK~RGA~n~i~~l~~~~~-~---~GVV~aSaGNha~gvA~aA~~lGi~~~IvmP~~tp~~Kv~~~r~~GAeVil~g~--~ 140 (521)
T PRK12483 67 FKIRGAYNKMARLPAEQL-A---RGVITASAGNHAQGVALAAARLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLHGE--S 140 (521)
T ss_pred hHHHHHHHHHHHhHHHHh-c---CcEEEECCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--C
Confidence 899999999998764432 1 459999999999999999999999999999999999999999999999999985 7
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. +++|++||+||.+ ++||+|+|+||++|+++.||+||+|+|+||+++|++.++|..+|++||||
T Consensus 141 ~d~a~~~A~~la~e~-g~~~v~pfdd~~v-iaGqgTig~EI~eQ~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIG 218 (521)
T PRK12483 141 FPDALAHALKLAEEE-GLTFVPPFDDPDV-IAGQGTVAMEILRQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIG 218 (521)
T ss_pred HHHHHHHHHHHHHhc-CCeeeCCCCChHH-HHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEE
Confidence 899999999998886 7899999999998 88999999999999965699999999999999999999999999999999
Q ss_pred EecCCCCccc----CCCCC-----CccccccCCCC---CcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHH
Q 023695 161 IEPTESPVLS----GGKPG-----PHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 228 (278)
Q Consensus 161 V~~~~~~~~~----~~~~~-----~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~ 228 (278)
|||++++++. .+++. .+.++|++... .++.+.++++|+++.|+|+|+.++++.|++++|+++||++|+
T Consensus 219 Vep~~a~~~~~sl~~g~~~~~~~~~t~adGiav~~~g~~~~~~~~~~vd~vv~Vse~ei~~ai~~l~~~~~i~vEpagAa 298 (521)
T PRK12483 219 VEPDDSNCLQAALAAGERVVLGQVGLFADGVAVAQIGEHTFELCRHYVDEVVTVSTDELCAAIKDIYDDTRSITEPAGAL 298 (521)
T ss_pred EEeCCCchhhHHHhcCCcccCCCCCceeceeccCCCCHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhCCcEEeHHHHH
Confidence 9999998764 23331 23456666432 234455789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHHH
Q 023695 229 AAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 270 (278)
Q Consensus 229 a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 270 (278)
++|+++++.++...++++||+|+ |||+ +|...+..+.++
T Consensus 299 alAal~~~~~~~~~~g~~VV~Il-sGgN--id~~~l~~i~~r 337 (521)
T PRK12483 299 AVAGIKKYAEREGIEGQTLVAID-SGAN--VNFDRLRHVAER 337 (521)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEe-CCCC--CCHHHHHHHHHH
Confidence 99999998776655788899898 8898 454466666554
No 17
>PLN02550 threonine dehydratase
Probab=100.00 E-value=1.6e-50 Score=376.57 Aligned_cols=258 Identities=21% Similarity=0.255 Sum_probs=222.4
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||+|++.+.|..+.++. .. +.||++|+||||+++|++|+++|++|+||||++++..|++.++.|||+|+.++. +
T Consensus 139 FK~RGA~n~I~~L~~e~-~~---~GVV~aSaGNhAqgvA~aA~~lGika~IvmP~~tp~~Kv~~~r~~GAeVvl~g~--~ 212 (591)
T PLN02550 139 FKLRGAYNMMAKLPKEQ-LD---KGVICSSAGNHAQGVALSAQRLGCDAVIAMPVTTPEIKWQSVERLGATVVLVGD--S 212 (591)
T ss_pred HHHHHHHHHHHHHHHhc-CC---CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--C
Confidence 89999999999885442 23 459999999999999999999999999999999999999999999999999985 6
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. +++|++||+||.+ ++||+|+|+||++|+++.+|+||+|+|+||+++|++.++|..+|++||||
T Consensus 213 ~dea~~~A~~la~e~-g~~fi~pfddp~v-iaGqgTig~EI~eQl~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIG 290 (591)
T PLN02550 213 YDEAQAYAKQRALEE-GRTFIPPFDHPDV-IAGQGTVGMEIVRQHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIG 290 (591)
T ss_pred HHHHHHHHHHHHHhc-CCEEECCCCChHH-HHHHHHHHHHHHHHcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEE
Confidence 899999999998885 7889999999998 78999999999999965699999999999999999999999999999999
Q ss_pred EecCCCCccc----CCCCC-----CccccccCCCC---CcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHH
Q 023695 161 IEPTESPVLS----GGKPG-----PHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 228 (278)
Q Consensus 161 V~~~~~~~~~----~~~~~-----~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~ 228 (278)
|||++++++. .+++. .+..+|+.... .++.+.++++|+++.|+|+|+.++++++++++|+++||++|+
T Consensus 291 VEp~~a~~~~~s~~~G~~v~~~~~~tiAdGiav~~~G~~t~~i~~~~vD~vV~Vsd~eI~~Ai~~l~e~~givvEpAGA~ 370 (591)
T PLN02550 291 VEPSDANAMALSLHHGERVMLDQVGGFADGVAVKEVGEETFRLCRELVDGVVLVSRDAICASIKDMFEEKRSILEPAGAL 370 (591)
T ss_pred EEECCChHHHHHHhcCCccccCCCCCccceeecCCCCHHHHHHHHhhCCEEEEECHHHHHHHHHHHHHHCCCEEeHHHHH
Confidence 9999998764 34432 23456665432 233455789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHH
Q 023695 229 AAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRK 269 (278)
Q Consensus 229 a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~ 269 (278)
++||++++.++...++++||+|+ ||||- |...+....+
T Consensus 371 alAall~~~~~~~~~g~~Vv~vl-sGgNi--d~~~l~~v~~ 408 (591)
T PLN02550 371 ALAGAEAYCKYYGLKDENVVAIT-SGANM--NFDRLRIVTE 408 (591)
T ss_pred HHHHHHHHHHhcCCCCCeEEEEe-cCCCC--CHHHHHHHHH
Confidence 99999998776556788999998 88884 4445555543
No 18
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=2.4e-50 Score=356.16 Aligned_cols=263 Identities=19% Similarity=0.204 Sum_probs=218.7
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.+++++|. .++ ++||++|+||||+|+|++|+.+|++|+||||+++++.|++.|+.|||+|+.+++. .
T Consensus 31 ~K~R~a~~~l~~a~~~g~-~~~-~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~l~~~GA~v~~~~~~-~ 107 (316)
T cd06448 31 FKIRGIGHLCQKSAKQGL-NEC-VHVVCSSGGNAGLAAAYAARKLGVPCTIVVPESTKPRVVEKLRDEGATVVVHGKV-W 107 (316)
T ss_pred hHHHHHHHHHHHHHHhhc-ccC-CeEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCc-h
Confidence 799999999999999985 333 6799999999999999999999999999999999999999999999999999863 2
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCC--CCCEEEEecCCCccHHHHHHHHHhhC-CCcE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG--RIDALVSGIGTGGTITGAGKFLKEKN-PNIK 157 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~--~~d~iv~~vG~Gg~~aGi~~~~k~~~-~~~~ 157 (278)
++++.+.+++++++.++++|++||+||.+ ..||.++++||++|+++ .||+||+|+|+||+++|++++||+.+ ++++
T Consensus 108 ~~~~~~~~~~l~~~~~~~~~~~~~~n~~~-~~g~~t~~~Ei~~q~~~~~~~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ 186 (316)
T cd06448 108 WEADNYLREELAENDPGPVYVHPFDDPLI-WEGHSSMVDEIAQQLQSQEKVDAIVCSVGGGGLLNGIVQGLERNGWGDIP 186 (316)
T ss_pred HHHHHHHHHHHHhccCCcEEeCCCCCchh-hccccHHHHHHHHHccccCCCCEEEEEeCchHHHHHHHHHHHhcCCCCCE
Confidence 67777778888777557899999999988 78999999999999965 59999999999999999999999996 9999
Q ss_pred EEEEecCCCCccc----CCCC-----CCccccccCCCCCcc---cccccccCeEEEeCHHHHHHHHHHHHHhcCceeecc
Q 023695 158 LYGIEPTESPVLS----GGKP-----GPHKIQGIGAGFVPG---VLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGIS 225 (278)
Q Consensus 158 vigV~~~~~~~~~----~~~~-----~~~~~~gl~~~~~~~---~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~ 225 (278)
||+|||++++++. .+++ ..+.++|++.+..+. ...++..|+.+.|+|+|+++++++|++++||++||+
T Consensus 187 ii~Vep~g~~~~~~~~~~g~~~~~~~~~t~a~glg~~~~~~~~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~~~gi~~~~s 266 (316)
T cd06448 187 VVAVETEGAHSLNASLKAGKLVTLPKITSVATSLGAKTVSSQALEYAQEHNIKSEVVSDRDAVQACLRFADDERILVEPA 266 (316)
T ss_pred EEEEeeCCChHHHHHHHcCCcEecCCCCchhhccCCCCcCHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHcCceechh
Confidence 9999999997663 2332 134556787665443 223466899999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-----hcCC-CCCCeEEEEecCCCcCCcchhhcHHHHH
Q 023695 226 SGGAAAAAIEIA-----KRPE-NAGKLIVVIFPSFGERYLSSVLFESVRK 269 (278)
Q Consensus 226 sg~a~aa~~~~~-----~~~~-~~~~~vv~i~~~gG~~~~~~~~~~~~~~ 269 (278)
||++++++++.. +++. .++++||+|+ |||+. +|..-|.++++
T Consensus 267 saa~laa~~~~~~~~~~~~~~~~~~~~Vv~il-tg~n~-~~~~~~~~~~~ 314 (316)
T cd06448 267 CGAALAVVYSGKILDLQLEVLLTPLDNVVVVV-CGGSN-ITLEQLKEYKK 314 (316)
T ss_pred HHHHHHHHHhCcchhhhcccccCCCCeEEEEE-CCCCC-CCHHHHHHHHH
Confidence 999999998532 2122 4688999999 66663 14335555543
No 19
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=3.3e-50 Score=372.79 Aligned_cols=259 Identities=23% Similarity=0.304 Sum_probs=222.6
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||+|+|.+++..+.++.. .+.||++|+||||+++|++|+++|++|+||||++++..|++.++.|||+|+.++. +
T Consensus 47 fK~RgA~n~i~~l~~~~~----~~gVV~aSaGNha~~vA~aa~~~Gi~~~IvmP~~tp~~Kv~~~r~~GA~Vvl~g~--~ 120 (499)
T TIGR01124 47 FKLRGAYNKMAQLSPEQK----ARGVIAASAGNHAQGVAFSAARLGLKALIVMPETTPDIKVDAVRGFGGEVVLHGA--N 120 (499)
T ss_pred CHHHHHHHHHHHhhHHhc----CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEeCc--C
Confidence 899999999998744322 1569999999999999999999999999999999999999999999999999985 6
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. +++|++||+||.+ ++||+|+|.||++|++++||+||+|+|+|||++|++.++|..+|++||||
T Consensus 121 ~d~a~~~a~~la~~~-g~~~i~p~~~~~~-i~G~gtig~EI~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIg 198 (499)
T TIGR01124 121 FDDAKAKAIELSQEK-GLTFIHPFDDPLV-IAGQGTLALEILRQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIG 198 (499)
T ss_pred HHHHHHHHHHHHHhc-CCEeeCCCCChHH-HHhhHHHHHHHHHhCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEE
Confidence 899999999998885 7899999999988 79999999999999965799999999999999999999999999999999
Q ss_pred EecCCCCccc----CCCC-----CCccccccCCCC---CcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHH
Q 023695 161 IEPTESPVLS----GGKP-----GPHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 228 (278)
Q Consensus 161 V~~~~~~~~~----~~~~-----~~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~ 228 (278)
|||++++++. .+++ ..+.++|++... .++.+.++++|+++.|+|+|+.++++.|++++|+++||++|+
T Consensus 199 Vep~~~~~~~~s~~~g~~~~~~~~~t~adgiav~~~g~~~~~~~~~~vd~vv~V~d~ei~~ai~~l~~~~gii~EpagA~ 278 (499)
T TIGR01124 199 VEPTDSDCMKQALDAGEPVDLDQVGLFADGVAVKRVGDETFRLCQQYLDDIVTVDTDEVCAAIKDLFEDTRAVAEPAGAL 278 (499)
T ss_pred EEECCChHHHHHHhcCCceeCCCCCCccCcccCCCccHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEEechHHH
Confidence 9999998763 3333 123456665433 244456789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHHH
Q 023695 229 AAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 270 (278)
Q Consensus 229 a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 270 (278)
++|++++++++...+++++|+|+ +||+-.++ .++.+.++
T Consensus 279 ~lAal~~~~~~~~~~~~~vv~i~-sG~n~~~~--~l~~~~~r 317 (499)
T TIGR01124 279 ALAGLKKYVALHGIRGQTLVAIL-SGANMNFH--RLRYVSER 317 (499)
T ss_pred HHHHHHHhhhhcCCCCCeEEEEE-CCCCCCHH--HHHHHHHH
Confidence 99999998877655688899998 88884444 55555444
No 20
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=2.7e-50 Score=365.30 Aligned_cols=256 Identities=21% Similarity=0.312 Sum_probs=220.9
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.++++. ++||++|+||||+++|++|+++|++|++|||+.++..|++.++.|||+|+.++. +
T Consensus 30 ~K~R~a~~~i~~~~~~~~~----~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~ 103 (380)
T TIGR01127 30 FKIRGALNKIANLSEDQRQ----RGVVAASAGNHAQGVAYAAKKFGIKAVIVMPESAPPSKVKATKSYGAEVILHGD--D 103 (380)
T ss_pred cHHHHHHHHHHhcchhccC----CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCcHHHHHHHHHCCCEEEEECC--C
Confidence 8999999999999988863 469999999999999999999999999999999999999999999999999985 6
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. +++|++||+|+.+ ++||+|+++||++|+ +.||+||+|+|+||+++|++.++|..+|++||||
T Consensus 104 ~~~a~~~a~~~~~~~-~~~~~~~~~~~~~-~~g~~t~~~Ei~~q~-~~~D~vv~~vG~Gg~~aGi~~~~k~~~p~~kvig 180 (380)
T TIGR01127 104 YDEAYAFATSLAEEE-GRVFVHPFDDEFV-MAGQGTIGLEIMEDI-PDVDTVIVPVGGGGLISGVASAAKQINPNVKVIG 180 (380)
T ss_pred HHHHHHHHHHHHHhc-CCEecCCCCChhh-hhhhHHHHHHHHHhC-CCCCEEEEEeChHHHHHHHHHHHHHhCCCCEEEE
Confidence 899999999998885 7899999999988 799999999999999 4799999999999999999999999999999999
Q ss_pred EecCCCCccc----CCCCC-----CccccccCCCC---CcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHH
Q 023695 161 IEPTESPVLS----GGKPG-----PHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 228 (278)
Q Consensus 161 V~~~~~~~~~----~~~~~-----~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~ 228 (278)
|||++++++. .+++. .+..+|++... .++.+..+++|+++.|+|+|+.+++++|++++|+++||++++
T Consensus 181 Ve~~~~~~~~~~~~~g~~~~~~~~~~~a~g~~~~~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~gi~~e~s~a~ 260 (380)
T TIGR01127 181 VEAEGAPSMYESLREGKIKAVESVRTIADGIAVKKPGDLTFNIIKEYVDDVVTVDEEEIANAIYLLLERHKILAEGAGAA 260 (380)
T ss_pred EEECCChHHHHHHHcCCceecCCCCCeecchhCCCccHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEechHHHH
Confidence 9999998763 34332 23456665322 233445688999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHHH
Q 023695 229 AAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 270 (278)
Q Consensus 229 a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 270 (278)
+++++++.... .++++||+|+ +||+. |...|+.+.+.
T Consensus 261 ~laa~~~~~~~--~~~~~vv~i~-sGGn~--d~d~l~~vi~~ 297 (380)
T TIGR01127 261 GVAALLEQKVD--VKGKKIAVVL-SGGNI--DLNLLNKIIEK 297 (380)
T ss_pred HHHHHHhCccc--cCCCeEEEEe-CCCCC--CHHHHHHHHHH
Confidence 99999874322 3678899999 77884 44466666544
No 21
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=6.9e-50 Score=354.31 Aligned_cols=248 Identities=22% Similarity=0.254 Sum_probs=215.0
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.++|.++.++|.. +.||++|+||||+|+|++|+++|++|+||||+++++.|++.++.|||+|+.+++ +
T Consensus 63 fK~RgA~~~l~~a~~~~~~----~~VV~aSsGN~G~alA~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~~g~--~ 136 (349)
T PRK08813 63 YKVRGALNALLAGLERGDE----RPVICASAGNHAQGVAWSAYRLGVQAITVMPHGAPQTKIAGVAHWGATVRQHGN--S 136 (349)
T ss_pred CHHHHHHHHHHHHHHcCCC----CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--C
Confidence 8999999999999999873 359999999999999999999999999999999999999999999999999975 7
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. +++|++||+||.+ ++||+|+|+||++|. ||+||+|+|+||+++|++.+||+ +.++||+
T Consensus 137 ~~~a~~~a~~la~~~-g~~~v~~~~np~~-i~G~~Tig~EI~e~~---pD~VvvpvGgGGliaGia~~lk~--~~~rVig 209 (349)
T PRK08813 137 YDEAYAFARELADQN-GYRFLSAFDDPDV-IAGQGTVGIELAAHA---PDVVIVPIGGGGLASGVALALKS--QGVRVVG 209 (349)
T ss_pred HHHHHHHHHHHHHhc-CCEEcCccCChHH-HHHHHHHHHHHHcCC---CCEEEEEeCccHHHHHHHHHHhc--CCCEEEE
Confidence 899999999999885 8999999999998 789999999999874 79999999999999999999996 5699999
Q ss_pred EecCCCCccc---CCCC-----CCccccccCCC---CCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHH
Q 023695 161 IEPTESPVLS---GGKP-----GPHKIQGIGAG---FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 229 (278)
Q Consensus 161 V~~~~~~~~~---~~~~-----~~~~~~gl~~~---~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a 229 (278)
|||++++++. .+++ ..+.++|++.. ..++.+..+.+|+++.|+|+|+.+++++|++++|+++||++|++
T Consensus 210 Vqpega~~~~~s~~g~~~~~~~~~tiadgl~~~~p~~~~~~i~~~~vd~vv~Vsd~ei~~a~~~l~~~~gl~vE~aga~a 289 (349)
T PRK08813 210 AQVEGVDSMARAIRGDLREIAPVATLADGVKVKIPGFLTRRLCSSLLDDVVIVREAELRETLVRLALEEHVIAEGAGALA 289 (349)
T ss_pred EEECCCchHHHHHcCCCcccCCCCceecccccCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEEEcHHHH
Confidence 9999997642 1222 23556777643 23445567889999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHHH
Q 023695 230 AAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 270 (278)
Q Consensus 230 ~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 270 (278)
+++++++ .++++++|+ +|||- |...+.+++..
T Consensus 290 lAa~~~~------~~~~v~~vl-sGgN~--d~~~~~~~~~~ 321 (349)
T PRK08813 290 LAAGRRV------SGKRKCAVV-SGGNI--DATVLATLLSE 321 (349)
T ss_pred HHHHHHh------CCCCEEEEE-CCCCC--CHHHHHHHHHh
Confidence 9998762 456888888 89994 54466666653
No 22
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=4.6e-50 Score=363.78 Aligned_cols=257 Identities=23% Similarity=0.300 Sum_probs=218.6
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||+|++.+.+..+.+++.. ++||++|+||||+++|++|+++|++|+||||++++..|++.++.|||+|+.++. +
T Consensus 50 fK~RgA~n~i~~l~~~~~~----~gVV~aSaGNhg~avA~aa~~~Gi~~~IvmP~~~p~~k~~~~r~~GA~Vv~~g~--~ 123 (403)
T PRK08526 50 YKIRGAYNKIANLSEEQKQ----HGVIAASAGNHAQGVAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGD--N 123 (403)
T ss_pred CHHHHHHHHHHhccHhhcC----CEEEEECccHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHhCCCEEEEECC--C
Confidence 8999999999998866541 569999999999999999999999999999999999999999999999999985 6
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. +++|++||+||.+ ++||+|+|+||++|+ +.||+||+|+|+||+++|++.++|..+|+++|||
T Consensus 124 ~~~a~~~a~~~a~~~-g~~~v~p~~~~~~-i~G~gtia~EI~eq~-~~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvig 200 (403)
T PRK08526 124 YDEAYAFALEYAKEN-NLTFIHPFEDEEV-MAGQGTIALEMLDEI-SDLDMVVVPVGGGGLISGIASAAKQINPNIKIIG 200 (403)
T ss_pred HHHHHHHHHHHHHhc-CCEeeCCCCCHHH-HhhhHHHHHHHHHhc-CCCCEEEEecChHHHHHHHHHHHHHhCCCCEEEE
Confidence 899999999998885 7899999999987 899999999999999 4799999999999999999999999999999999
Q ss_pred EecCCCCccc----CCCC-----CCccccccCCCCC-c--ccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHH
Q 023695 161 IEPTESPVLS----GGKP-----GPHKIQGIGAGFV-P--GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 228 (278)
Q Consensus 161 V~~~~~~~~~----~~~~-----~~~~~~gl~~~~~-~--~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~ 228 (278)
|||++++++. .+++ ..+.++|++.... + +...++++|+++.|+|+|+.++++.|++++|+++||++++
T Consensus 201 Vep~~~~~~~~s~~~g~~~~~~~~~tiadgiav~~~~~~~~~~~~~~vd~~v~V~d~ei~~A~~~l~~~~gi~ve~aga~ 280 (403)
T PRK08526 201 VGAKGAPAMYESFHAKKIINSKSVRTIADGIAVRDASPINLAIILECVDDFVQVDDEEIANAILFLLEKQKIVVEGAGAA 280 (403)
T ss_pred EEECCCChHHHHHHcCCcccCCCCCceeccccCCCCCHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEeeHHHHH
Confidence 9999998763 2332 2344567664321 2 2233578999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHHH
Q 023695 229 AAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 270 (278)
Q Consensus 229 a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 270 (278)
++++++...... .++++||+|+ |||+.++ ..+.++++.
T Consensus 281 ~lAall~~~~~~-~~~~~Vv~il-sGGnid~--~~~~~i~~~ 318 (403)
T PRK08526 281 SVAALLHQKIDL-KKGKKIGVVL-SGGNIDV--QMLNIIIEK 318 (403)
T ss_pred HHHHHHhCcccc-ccCCeEEEEE-CCCCCCH--HHHHHHHHH
Confidence 999988532211 3577888888 8899544 466666554
No 23
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=3.4e-50 Score=366.55 Aligned_cols=257 Identities=23% Similarity=0.331 Sum_probs=217.5
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||+|++.+++..+.+.+. . +.||++|+||||+|+|++|+++|++|+||||++++..|++.++.|||+|+.+++ +
T Consensus 55 fK~Rga~~~i~~~~~~~~-~---~gvv~aSsGN~g~a~A~aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~~~--~ 128 (406)
T PRK06382 55 FKSRGAVFKFSKLSEDEL-R---NGVITASAGNHAQGVAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGR--D 128 (406)
T ss_pred CHHHHHHHHHHhcchhcc-C---CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEECC--C
Confidence 899999999998877654 2 359999999999999999999999999999999999999999999999999986 6
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. +++|++||+|+.+ ++||+|+++||++|+ +.||+||+|+|+||+++|+++++|..+|++||||
T Consensus 129 ~~~a~~~a~~la~~~-~~~~v~~~~~~~~-i~g~~t~~~Ei~eq~-~~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vig 205 (406)
T PRK06382 129 YDEAHRYADKIAMDE-NRTFIEAFNDRWV-ISGQGTIGLEIMEDL-PDLDQIIVPVGGGGLISGIALAAKHINPNVKIIG 205 (406)
T ss_pred HHHHHHHHHHHHHhc-CCEecCccCChHH-HHHHHHHHHHHHHhc-CCCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEE
Confidence 889999999998885 7899999999988 789999999999999 5799999999999999999999999999999999
Q ss_pred EecCCCCcc----cCCCC-----CCccccccCCCC---CcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHH
Q 023695 161 IEPTESPVL----SGGKP-----GPHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 228 (278)
Q Consensus 161 V~~~~~~~~----~~~~~-----~~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~ 228 (278)
|||++++++ ..+++ ..+.++|++.+. .++.+.++++|+++.|+|+|++++++.|++++|+++||++|+
T Consensus 206 Ve~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~ei~~a~~~l~~~~gi~~epsga~ 285 (406)
T PRK06382 206 IESELSDSMKASLREGKIVAHTSGVSICDGISVKYPGDLTFDIAKNYVDDIVTVTEESVSKAIYKLFEREKIVAEPSGAV 285 (406)
T ss_pred EEECCChHHHHHHHcCCceecCCCCCccccccCCCccHHHHHHHHHcCCEEEEECHHHHHHHHHHHHHHcCceechHHHH
Confidence 999999875 23333 234567776643 233455788999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCcC---CcchhhcHHHHH
Q 023695 229 AAAAAIEIAKRPENAGKLIVVIFPSFGER---YLSSVLFESVRK 269 (278)
Q Consensus 229 a~aa~~~~~~~~~~~~~~vv~i~~~gG~~---~~~~~~~~~~~~ 269 (278)
++++++.. + ...++++||+|+ +||+. +++..+.+.|..
T Consensus 286 ~laal~~~-~-~~~~~~~Vv~i~-sGGn~d~~~~~~~~~~~~~~ 326 (406)
T PRK06382 286 GLAAIMEG-K-VDVKGKKVAIVV-SGGNINPLLMSKIIYKELEN 326 (406)
T ss_pred HHHHHHhc-c-ccCCCCEEEEEe-CCCCCCHHHHHHHHHHHHHh
Confidence 99877542 2 123567888888 78994 344444444433
No 24
>PLN02970 serine racemase
Probab=100.00 E-value=5.1e-50 Score=356.02 Aligned_cols=250 Identities=19% Similarity=0.224 Sum_probs=211.3
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.+++.. ++||++|+||||+|+|++|+++|++|+||||+++++.|++.|+.|||+|+.++. +
T Consensus 57 fKdRga~~~i~~~~~~~~~----~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~~~--~ 130 (328)
T PLN02970 57 FKFRGACNAIFSLSDDQAE----KGVVTHSSGNHAAALALAAKLRGIPAYIVVPKNAPACKVDAVIRYGGIITWCEP--T 130 (328)
T ss_pred cHHHHHHHHHHHhhHhhcC----CeEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEEEeCC--C
Confidence 8999999999998865541 579999999999999999999999999999999999999999999999999996 5
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++.+.+.+++++++ ++++|++||+|+.+ ..||+|+++||++|++ .||+||+|+|+||+++|++++||+.+|++|||+
T Consensus 131 ~~~~~~~a~~la~~-~g~~~~~~~~n~~~-~~g~~t~g~Ei~~ql~-~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~ 207 (328)
T PLN02970 131 VESREAVAARVQQE-TGAVLIHPYNDGRV-ISGQGTIALEFLEQVP-ELDVIIVPISGGGLISGIALAAKAIKPSIKIIA 207 (328)
T ss_pred HHHHHHHHHHHHHh-cCCEEeCCCCCcch-hhehHHHHHHHHHhcc-CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEE
Confidence 78888889998887 48999999999987 6899999999999994 699999999999999999999999999999999
Q ss_pred EecCCCCccc----CCCC-----CCccccccCCCC--CcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHH
Q 023695 161 IEPTESPVLS----GGKP-----GPHKIQGIGAGF--VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 229 (278)
Q Consensus 161 V~~~~~~~~~----~~~~-----~~~~~~gl~~~~--~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a 229 (278)
|||++++++. .+++ .++..++++.+. .++...++.+|+++.|+|+|+++++++|++++|+++||++|++
T Consensus 208 Vep~~~~~~~~s~~~g~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~la~~~gi~ve~s~aa~ 287 (328)
T PLN02970 208 AEPKGADDAAQSKAAGEIITLPVTNTIADGLRASLGDLTWPVVRDLVDDVITVDDKEIIEAMKLCYERLKVVVEPSGAIG 287 (328)
T ss_pred EEECCCcHHHHHHHcCCceeCCCCCCccccccCCcCHHHHHHHHhhCCEEEEECHHHHHHHHHHHHHhcCcEEeHHHHHH
Confidence 9999998653 2322 123445554431 1233446788999999999999999999999999999999999
Q ss_pred HHHHHHHHhc-CC-CC-CCeEEEEecCCCcCCcc
Q 023695 230 AAAAIEIAKR-PE-NA-GKLIVVIFPSFGERYLS 260 (278)
Q Consensus 230 ~aa~~~~~~~-~~-~~-~~~vv~i~~~gG~~~~~ 260 (278)
++++++...+ +. .+ +++||+++ |||+..++
T Consensus 288 laaa~~~~~~~~~~~~~~~~vv~v~-~Ggn~~~~ 320 (328)
T PLN02970 288 LAAALSDSFRSNPAWKGCKNVGIVL-SGGNVDLG 320 (328)
T ss_pred HHHHHhCcccccccccCCCeEEEEE-CCCCCCHH
Confidence 9998864332 22 23 46788888 88996544
No 25
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=1.6e-49 Score=369.64 Aligned_cols=258 Identities=22% Similarity=0.292 Sum_probs=222.6
Q ss_pred CccHHHHHHHHHHHHc-CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCC
Q 023695 1 MLQKIGYSMISDAEAK-GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK 79 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~-g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~ 79 (278)
||+|+|.+++..+.++ +. +.||++|+||||+++|++|+++|++|+||||++++..|++.++.|||+|+.++.
T Consensus 50 fK~RgA~n~i~~l~~~~~~-----~gvV~aSaGNha~avA~aa~~lGi~~~IvmP~~tp~~K~~~~r~~GA~Vi~~g~-- 122 (504)
T PRK09224 50 FKLRGAYNKMAQLTEEQLA-----RGVITASAGNHAQGVALSAARLGIKAVIVMPVTTPDIKVDAVRAFGGEVVLHGD-- 122 (504)
T ss_pred ChHHHHHHHHHhhhHHhcC-----CEEEEECcCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--
Confidence 8999999999987643 33 579999999999999999999999999999999999999999999999999985
Q ss_pred ChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEE
Q 023695 80 GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLY 159 (278)
Q Consensus 80 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vi 159 (278)
+++++.+.+++++++. +++|++||+||.+ ++|++|+++||++|+++.||+||+|+|||||++|++.++|..+|++|||
T Consensus 123 ~~~~a~~~a~~l~~~~-g~~~v~~f~~~~~-i~G~gTi~~EI~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVi 200 (504)
T PRK09224 123 SFDEAYAHAIELAEEE-GLTFIHPFDDPDV-IAGQGTIAMEILQQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVI 200 (504)
T ss_pred CHHHHHHHHHHHHHhc-CCEEeCCCCCcHH-HHhHHHHHHHHHHhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEE
Confidence 7899999999998885 8899999999998 7899999999999996559999999999999999999999999999999
Q ss_pred EEecCCCCccc----CCCCC-----CccccccCCCC---CcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHH
Q 023695 160 GIEPTESPVLS----GGKPG-----PHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSG 227 (278)
Q Consensus 160 gV~~~~~~~~~----~~~~~-----~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg 227 (278)
||||++++++. .+++. .+.++|++... .++.+.++++|++++|+|+|+.++++.|++++|+++||++|
T Consensus 201 gVe~~~~~~~~~s~~~g~~~~~~~~~~~adg~av~~~g~~~~~~~~~~vd~~v~Vsd~ei~~a~~~l~~~~~~~~epagA 280 (504)
T PRK09224 201 GVEPEDSACLKAALEAGERVDLPQVGLFADGVAVKRIGEETFRLCQEYVDDVITVDTDEICAAIKDVFEDTRSIAEPAGA 280 (504)
T ss_pred EEEECCChHHHHHHhcCCCccCCCCCcccCcccCCCccHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHhcCeEEcHHHH
Confidence 99999998763 33332 22345665432 23445578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHHH
Q 023695 228 GAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 270 (278)
Q Consensus 228 ~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 270 (278)
+++|+++++.++...+++++|+|+ +||+ +|...+..+.++
T Consensus 281 ~~lAal~~~~~~~~~~g~~vv~i~-sG~n--~~~~~l~~~~~r 320 (504)
T PRK09224 281 LALAGLKKYVAQHGIEGETLVAIL-SGAN--MNFDRLRYVAER 320 (504)
T ss_pred HHHHHHHHhhhhcCCCCCeEEEEE-CCCC--CCHHHHHHHHHH
Confidence 999999998877655688899888 7788 444456665554
No 26
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=7.3e-50 Score=357.69 Aligned_cols=252 Identities=20% Similarity=0.270 Sum_probs=212.3
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAK 79 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~-~~~~~~~~~~~~Ga~v~~~~~~~ 79 (278)
||||++.+++.++.++|. ++||++|+||||+|+|++|+++|++|+||||++ .++.|+.+++.|||+|+.+++
T Consensus 58 ~KdR~a~~~i~~a~~~g~-----~~vV~aSsGN~G~AlA~~aa~~G~~~~ivvp~~~~~~~k~~~~~a~GA~V~~~~~-- 130 (351)
T PRK06352 58 FKDRGMVMAVAKAKEEGA-----EAVICASTGNTSAAAAAYATRAGLKAYIVIPEGKVALGKLAQAVMYGADIISIQG-- 130 (351)
T ss_pred hHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHHHHHcCCcEEEEEeCCCCcHHHHHHHHhcCCEEEEECC--
Confidence 899999999999999986 689999999999999999999999999999997 589999999999999999996
Q ss_pred ChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCC----
Q 023695 80 GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPN---- 155 (278)
Q Consensus 80 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~---- 155 (278)
+++++.+.+++++++. ++++++ +.||.+ +.||.++++||++|++..||+||+|+|+||+++|++++||+.+++
T Consensus 131 ~~~~~~~~a~~~~~~~-~~~~~~-~~n~~~-~~G~~t~~~EI~~Q~~~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~ 207 (351)
T PRK06352 131 NFDEALKSVRELAETE-AVTLVN-SVNPYR-LEGQKTAAFEICEQLGSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASG 207 (351)
T ss_pred CHHHHHHHHHHHHHhc-Cccccc-CCCccc-eeeHHHHHHHHHHHcCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCCC
Confidence 5788889999988874 566665 458888 689999999999999667999999999999999999999998876
Q ss_pred -cEEEEEecCCCCcccCCCCCC---ccccccCCCC-Cccccccccc----CeEEEeCHHHHHHHHHHHHHhcCceeeccH
Q 023695 156 -IKLYGIEPTESPVLSGGKPGP---HKIQGIGAGF-VPGVLEVNII----DEVVQVSSDEAIETAKLLALKEGLFVGISS 226 (278)
Q Consensus 156 -~~vigV~~~~~~~~~~~~~~~---~~~~gl~~~~-~~~~~~~~~~----~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~s 226 (278)
++||+|||++++++..+++.. +..+++..+. ..+......+ +.++.|+|+|+++++++|++++||++||+|
T Consensus 208 ~~~vi~Vep~g~~~~~~g~~~~~~~~ia~~l~~~~~~~~~~~~~~~d~~~g~~~~V~d~e~~~a~r~la~~eGi~vepss 287 (351)
T PRK06352 208 LPRMHGFEAEGAAAIVQGKPIDNPETIATAIRIGNPASWGLAEAARDESGGYIHSVTDDEIVNAYKKIAAQDGVFIEPGS 287 (351)
T ss_pred CCEEEEEeeCCCCHHHhCCCcCCCCcceeEEEeCCCCcHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhhcCceEchhH
Confidence 899999999998765554431 2223433221 1111112233 348999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC-CCCCeEEEEecCCCcCCcchh
Q 023695 227 GGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSSV 262 (278)
Q Consensus 227 g~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~~ 262 (278)
|+++++++++++++. .++++||+++|++|+||+++.
T Consensus 288 aaalAa~~~~~~~~~~~~~~~Vv~v~tg~G~~~~~~~ 324 (351)
T PRK06352 288 AASLAGVIQHVANGTIKKGETVVCVFTGNGLKDPDTA 324 (351)
T ss_pred HHHHHHHHHHHHcCCCCCCCcEEEEeCCCCcCChHHH
Confidence 999999999887543 457889999988899999864
No 27
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=2.4e-49 Score=351.54 Aligned_cols=256 Identities=23% Similarity=0.303 Sum_probs=213.7
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.+.... ++|+++|+||||+|+|++|+.+|++|+||||+++++.|+.+++.|||+|+.+++ +
T Consensus 57 ~KdR~a~~~i~~~~~~~~~----~~vv~~SsGN~g~alA~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~ 130 (333)
T PRK08638 57 FKIRGAFNKLSSLTDAEKR----KGVVACSAGNHAQGVALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHGD--N 130 (333)
T ss_pred cHHHHHHHHHHhccHHhcC----CeEEEeCCcHHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEEECc--C
Confidence 8999999999987764321 569999999999999999999999999999999999999999999999999985 6
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. +++|++||+||.+ ..||+++++||++|+ +++|+||+|+|+||+++|++.+||+.+|+++||+
T Consensus 131 ~~~~~~~a~~~a~~~-g~~~~~~~~~~~~-~~g~~t~a~Ei~~q~-~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vig 207 (333)
T PRK08638 131 FNDTIAKVEEIVEEE-GRTFIPPYDDPKV-IAGQGTIGLEILEDL-WDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIG 207 (333)
T ss_pred HHHHHHHHHHHHHhc-CCEEcCcCCCcch-hccccHHHHHHHhhc-CCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEE
Confidence 788889999998886 7899999999988 789999999999999 5799999999999999999999999999999999
Q ss_pred EecCCCCccc----CCCCCCc-----cccccCCCCCccccc----ccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHH
Q 023695 161 IEPTESPVLS----GGKPGPH-----KIQGIGAGFVPGVLE----VNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSG 227 (278)
Q Consensus 161 V~~~~~~~~~----~~~~~~~-----~~~gl~~~~~~~~~~----~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg 227 (278)
|||++++++. .+.+..+ ..+++... .|..+. ++++|+++.|+|+|+++++++|++++|++++|++|
T Consensus 208 Vep~g~~~~~~s~~~g~~~~~~~~~ti~~gl~~~-~p~~~~~~~~~~~~d~~v~Vsd~ea~~a~~~l~~~~gi~~e~sgA 286 (333)
T PRK08638 208 VQSENVHGMAASFYAGEITTHRTTGTLADGCDVS-RPGNLTYEIVRELVDDIVLVSEDEIRNAMKDLIQRNKVVTEGAGA 286 (333)
T ss_pred EEECCCchHHHHHHCCCcccCCCCCCeeccccCC-CccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeechhHH
Confidence 9999997543 3443322 23344322 233222 47899999999999999999999999999999988
Q ss_pred HHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHH
Q 023695 228 GAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRK 269 (278)
Q Consensus 228 ~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~ 269 (278)
++++++.........+++++|+|+ +||+.+++ .|.+++.
T Consensus 287 ~~~Aa~~~~~~~~~~~~~~vv~v~-~Ggn~~~~--~~~~~~~ 325 (333)
T PRK08638 287 LATAALLSGKLDQYIQNKKVVAII-SGGNVDLS--RVSQITG 325 (333)
T ss_pred HHHHHHHhCCcccccCCCcEEEEE-CCCCCCHH--HHHHHHH
Confidence 888877643222224677899999 78998776 5555553
No 28
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=3.4e-49 Score=353.07 Aligned_cols=248 Identities=19% Similarity=0.207 Sum_probs=216.5
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.++|. ++||++|+||||+|+|++|+++|++|+||||+++++.|+.+++.|||+|+.+++ +
T Consensus 87 fKdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~v~~v~~--~ 159 (347)
T PRK08329 87 FKDRGTYVTVAKLKEEGI-----NEVVIDSSGNAALSLALYSLSEGIKVHVFVSYNASKEKISLLSRLGAELHFVEG--D 159 (347)
T ss_pred CHHHHHHHHHHHHHHcCC-----CEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECC--C
Confidence 899999999999999987 689999999999999999999999999999999999999999999999999986 4
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhC------C
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN------P 154 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~------~ 154 (278)
++++.+.+++++++. +.+|++++.||.+ ++||+|+++||++|++ .||+||+|+|+||+++|++++||+.. +
T Consensus 160 ~~~~~~~a~~l~~~~-~~~~~~~~~np~~-~eG~~t~~~Ei~eql~-~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~ 236 (347)
T PRK08329 160 RMEVHEEAVKFSKRN-NIPYVSHWLNPYF-LEGTKTIAYEIYEQIG-VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISK 236 (347)
T ss_pred HHHHHHHHHHHHHhc-CCeeccCCCCchh-hccchhHHHHHHHHcC-CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCC
Confidence 677778888888775 6788899999988 7899999999999995 89999999999999999999999873 5
Q ss_pred CcEEEEEecCCCCcccC-CCCCCccccccCCCCCcc-----cccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHH
Q 023695 155 NIKLYGIEPTESPVLSG-GKPGPHKIQGIGAGFVPG-----VLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 228 (278)
Q Consensus 155 ~~~vigV~~~~~~~~~~-~~~~~~~~~gl~~~~~~~-----~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~ 228 (278)
.+|||+|||+++.++.. .....+.+++++.+..+. .+.+++.+.++.|+|+|++++++.|++ +||++||+||+
T Consensus 237 ~p~ii~Vq~~g~~~~~~~~~~~~t~a~gi~i~~~~~~~~~~~~l~~~~g~~~~V~d~e~~~a~~~l~~-~Gi~vepssa~ 315 (347)
T PRK08329 237 MPKLVAVQAEGYESLCKRSKSENKLADGIAIPEPPRKEEMLRALEESNGFCISVGEEETRAALHWLRR-MGFLVEPTSAV 315 (347)
T ss_pred CCEEEEEecCCCchHHhccCCCCceeeeEEeCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHh-cCceECccHHH
Confidence 68999999999876643 223445667777554332 223566778999999999999999986 79999999999
Q ss_pred HHHHHHHHHhcCCC-CCCeEEEEecCCCcCCc
Q 023695 229 AAAAAIEIAKRPEN-AGKLIVVIFPSFGERYL 259 (278)
Q Consensus 229 a~aa~~~~~~~~~~-~~~~vv~i~~~gG~~~~ 259 (278)
++++++++.+++.. ++++||+++|++|.|++
T Consensus 316 a~Aa~~~l~~~g~i~~~~~Vv~~~TG~glK~~ 347 (347)
T PRK08329 316 ALAAYWKLLEEGLIEGGSKVLLPLSGSGLKNL 347 (347)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEeCCCCccCC
Confidence 99999999998763 67899999988888875
No 29
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=2.5e-49 Score=360.52 Aligned_cols=257 Identities=20% Similarity=0.290 Sum_probs=217.1
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEE---EEeCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL---VLTDP 77 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v---~~~~~ 77 (278)
||+|++.+++.++.+.. .. +.||++|+||||+++|++|+++|++|+||||+++++.|++.++.|||+| +.++
T Consensus 46 fK~RgA~~~i~~l~~~~-~~---~gvv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~vv~v~~~g- 120 (409)
T TIGR02079 46 YKIRGAYNFLKQLSDAQ-LA---KGVVCASAGNHAQGFAYACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILVG- 120 (409)
T ss_pred cHHHHHHHHHHhCCHHh-hC---CEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCCeeEEEEeC-
Confidence 89999999998754322 22 4699999999999999999999999999999999999999999999974 4444
Q ss_pred CCChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcE
Q 023695 78 AKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIK 157 (278)
Q Consensus 78 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~ 157 (278)
.+++++.+.+++++++. +++|++||+||.+ ++||+|+++||++|+++.||+||+|+|+||+++|++.+||+.+|+++
T Consensus 121 -~~~~~a~~~a~~~~~~~-g~~~~~~~~~~~~-~~g~~ti~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~ 197 (409)
T TIGR02079 121 -DTFDQCAAAAREHVEDH-GGTFIPPFDDPRI-IEGQGTVAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTK 197 (409)
T ss_pred -CCHHHHHHHHHHHHHhc-CCEEeCCCCCHhH-hhhhHHHHHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCE
Confidence 36899999999998885 7899999999988 78999999999999965699999999999999999999999999999
Q ss_pred EEEEecCCCCccc----CCCCC-----CccccccCCCCCc---ccccccccCeEEEeCHHHHHHHHHHHHHhcCceeecc
Q 023695 158 LYGIEPTESPVLS----GGKPG-----PHKIQGIGAGFVP---GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGIS 225 (278)
Q Consensus 158 vigV~~~~~~~~~----~~~~~-----~~~~~gl~~~~~~---~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~ 225 (278)
||||||++++++. .+++. .+.++|++....+ +.+...++|+++.|+|+|+.++++.|++++|+++||+
T Consensus 198 vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~g~~v~~~g~~~~~~~~~~vd~vv~V~d~e~~~a~~~l~~~~gi~ve~a 277 (409)
T TIGR02079 198 IIGVEPEGAPSMKASLEAGEVVTLDKIDNFVDGAAVKRVGDLNFKALKDVPDEVTLVPEGAVCTTILDLYNLEGIVAEPA 277 (409)
T ss_pred EEEEEeCCCCcHHHHHHCCCceecCCCCCeeccccCCCCcHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHhcCceecch
Confidence 9999999998764 24431 3445676654332 2334678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHHH
Q 023695 226 SGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 270 (278)
Q Consensus 226 sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 270 (278)
||+++|+++++.++ .++++||+|+ +|||-+++ .+.+++++
T Consensus 278 gaa~lAa~~~~~~~--~~~~~Vv~il-sGgn~d~~--~~~~~~~~ 317 (409)
T TIGR02079 278 GALSIAALERLGEE--IKGKTVVCVV-SGGNNDIE--RTEEIRER 317 (409)
T ss_pred HHHHHHHHHhhhhh--cCCCeEEEEE-CCCCCCHH--HHHHHHHH
Confidence 99999999987644 4688999999 78995444 55666554
No 30
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=5e-49 Score=357.76 Aligned_cols=252 Identities=25% Similarity=0.241 Sum_probs=216.7
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.+|.++|. ++|+++|+||||+|+|++|+++|++|+||||+++++.|+.+++.|||+|+.+++ +
T Consensus 110 fKdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~Vi~v~~--~ 182 (394)
T PRK08197 110 FKARGLAVGVSRAKELGV-----KHLAMPTNGNAGAAWAAYAARAGIRATIFMPADAPEITRLECALAGAELYLVDG--L 182 (394)
T ss_pred cHHhHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC--C
Confidence 899999999999999987 789999999999999999999999999999999999999999999999999996 5
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCC-CCEEEEecCCCccHHHHHHHHHhh-------
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGR-IDALVSGIGTGGTITGAGKFLKEK------- 152 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~-~d~iv~~vG~Gg~~aGi~~~~k~~------- 152 (278)
++++.+.+++++++. ++++++++.||.+ ++|++|+++||++|++++ ||+||+|+|+||+++|++++|++.
T Consensus 183 ~~~~~~~a~~~~~~~-g~~~~~~~~np~~-ieG~~t~a~Ei~eQl~~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~ 260 (394)
T PRK08197 183 ISDAGKIVAEAVAEY-GWFDVSTLKEPYR-IEGKKTMGLELAEQLGWRLPDVILYPTGGGVGLIGIWKAFDELEALGWIG 260 (394)
T ss_pred HHHHHHHHHHHHHhc-CcccccCCCCccc-hhcHHHHHHHHHHHcCCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcC
Confidence 788888888888775 7899999999998 789999999999999754 999999999999999999999987
Q ss_pred CCCcEEEEEecCCCCccc----CCCCC-------CccccccCCCCCcc--c-c--cccccCeEEEeCHHHHHHHHHHHHH
Q 023695 153 NPNIKLYGIEPTESPVLS----GGKPG-------PHKIQGIGAGFVPG--V-L--EVNIIDEVVQVSSDEAIETAKLLAL 216 (278)
Q Consensus 153 ~~~~~vigV~~~~~~~~~----~~~~~-------~~~~~gl~~~~~~~--~-~--~~~~~~~~~~v~d~e~~~a~~~l~~ 216 (278)
++.+|||+|||++++++. .+... .+..+++..+.... . + .+++.+..+.|+|+|++++++.|++
T Consensus 261 ~~~p~ii~Vq~~g~~~l~~~~~~g~~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~~~g~~v~V~d~e~~~a~~~la~ 340 (394)
T PRK08197 261 GKRPRLVAVQAEGCAPIVKAWEEGKEESEFWEDAHTVAFGIRVPKALGDFLVLDAVRETGGCAIAVSDDAILAAQRELAR 340 (394)
T ss_pred CCCCeEEEEEeCCCCHHHHHHHcCCCccccCCCCCceehhhhCCCCCCHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHHh
Confidence 388999999999997663 22211 12233443221110 1 1 1356678999999999999999999
Q ss_pred hcCceeeccHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCcCCcch
Q 023695 217 KEGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSS 261 (278)
Q Consensus 217 ~~Gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~ 261 (278)
++||++||+||+++++++++.+++. .++++||+++|++|.||+++
T Consensus 341 ~eGi~vepssaaala~~~~l~~~~~~~~~~~Vv~v~tG~g~k~~~~ 386 (394)
T PRK08197 341 EEGLFACPEGAATFAAARQLRESGWLKGDERVVLFNTGSGLKYPDT 386 (394)
T ss_pred cCCceECchHHHHHHHHHHHHHcCCcCCCCcEEEEeCCCCcCchhh
Confidence 9999999999999999999988765 35789999999999999874
No 31
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=4.3e-49 Score=359.17 Aligned_cols=265 Identities=20% Similarity=0.241 Sum_probs=218.5
Q ss_pred CccHHHHHHHHH-----HHHcCCCCCCC----------------eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH
Q 023695 1 MLQKIGYSMISD-----AEAKGLITPGE----------------SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL 59 (278)
Q Consensus 1 ~K~R~a~~~l~~-----a~~~g~l~~g~----------------~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~ 59 (278)
||+|++.++|.. ++++|.+.|+. ++||++|+||||+|+|++|+++|++|+||||+++++
T Consensus 114 FK~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~~~~~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~ 193 (441)
T PRK02991 114 IKARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASPEFRQFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQ 193 (441)
T ss_pred hHHHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcchhhhhhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCH
Confidence 899999999875 56888887764 479999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCC--------CCCE
Q 023695 60 ERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG--------RIDA 131 (278)
Q Consensus 60 ~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~--------~~d~ 131 (278)
.|++.|+.|||+|+.+++ +++++.+.+++++++.++++|+++++++.. ++||+|+++||++|+++ .||+
T Consensus 194 ~K~~~ir~~GAeVi~~~~--~~~~a~~~A~~la~~~~~~~~~~~~~~~~~-iaG~~Tig~EI~eQl~~~~~~vD~~~Pd~ 270 (441)
T PRK02991 194 WKKDKLRSHGVTVVEYEG--DYGVAVEEGRKAAESDPNCYFIDDENSRTL-FLGYAVAGLRLKAQLAEQGIVVDADHPLF 270 (441)
T ss_pred HHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhcCCeEeCCCCCchhH-HHhHHHHHHHHHHHhhhccCccccCCCCE
Confidence 999999999999999996 789999999999887656889999877776 89999999999999952 2679
Q ss_pred EEEecCCCccHHHHHHHHHhh-CCCcEEEEEecCCCCccc----CCCC-----------CCccccccCCCCC---ccccc
Q 023695 132 LVSGIGTGGTITGAGKFLKEK-NPNIKLYGIEPTESPVLS----GGKP-----------GPHKIQGIGAGFV---PGVLE 192 (278)
Q Consensus 132 iv~~vG~Gg~~aGi~~~~k~~-~~~~~vigV~~~~~~~~~----~~~~-----------~~~~~~gl~~~~~---~~~~~ 192 (278)
||+|+|+||+++|++.+||+. .++++||+|||++++++. .++. ..+.++|++.+.. ++.+.
T Consensus 271 VvvpvGgGGliaGia~~lk~~~~~~~kVigVEp~ga~~~~~s~~~G~~~~~~~~~~g~~~~Tiadgl~~~~~~~~~~~~~ 350 (441)
T PRK02991 271 VYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGLMTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAM 350 (441)
T ss_pred EEEEeCccHHHHHHHHHHHHhcCCCCEEEEEecCCChHHHHHHhcCCCcceeccccCCCCcchhhhhcCCCcchhHHHHH
Confidence 999999999999999999997 688999999999997652 3332 1244567765432 23344
Q ss_pred ccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCC-------C---CCCeEEEEecCCCcCCcchh
Q 023695 193 VNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE-------N---AGKLIVVIFPSFGERYLSSV 262 (278)
Q Consensus 193 ~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~-------~---~~~~vv~i~~~gG~~~~~~~ 262 (278)
++.+|+++.|+|+|+.++++.|++++|+++||++|+++++++++.+... . ++++||++. |||+. .+..
T Consensus 351 ~~~vd~~v~VsD~ei~~a~~~L~~~~gi~vEpS~AaalAa~~~l~~~~~~~~~~~l~~~~~~~~vv~~~-~gg~~-~~~~ 428 (441)
T PRK02991 351 ERLLDGVYTVSDETLYRLLGLLADTEGIRLEPSALAGMAGPVRVCASVAYLQRHGLSEQLKNATHLVWA-TGGSM-VPEE 428 (441)
T ss_pred HHhCCeEEEECHHHHHHHHHHHHHhcCceeeHHHHHHHHHHHHHHhCHHHHHHcCCccccCCCEEEEEE-CCCCC-CCHH
Confidence 6789999999999999999999999999999999999999987654321 1 467777777 66654 2223
Q ss_pred hcHHHHHH
Q 023695 263 LFESVRKE 270 (278)
Q Consensus 263 ~~~~~~~~ 270 (278)
.++++...
T Consensus 429 ~~~~~~~~ 436 (441)
T PRK02991 429 EMEQYLAK 436 (441)
T ss_pred HHHHHHHh
Confidence 55555544
No 32
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=2e-49 Score=352.67 Aligned_cols=246 Identities=20% Similarity=0.195 Sum_probs=208.7
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.++|++. ++||++|+||||+|+|++|+++|++|+||||+++++.|+++++.|||+|+.++.
T Consensus 53 ~K~R~a~~~v~~a~~~g~~~---~~vv~~SsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~V~~~~~--- 126 (338)
T PRK06608 53 FKVRGVLNHLLELKEQGKLP---DKIVAYSTGNHGQAVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILTNT--- 126 (338)
T ss_pred cHHHHHHHHHHHhhhhcCcC---CeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC---
Confidence 89999999999999999753 479999999999999999999999999999999999999999999999999974
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
.+++.+.+++ +++ +++||++||+|+.+ ++||++++.||++|++.+||+||+|+|+||+++|+++++|..++.++||+
T Consensus 127 ~~~~~~~a~~-~~~-~~~~~~~~~~~~~~-~~g~~t~a~Ei~~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vig 203 (338)
T PRK06608 127 RQEAEEKAKE-DEE-QGFYYIHPSDSDST-IAGAGTLCYEALQQLGFSPDAIFASCGGGGLISGTYLAKELISPTSLLIG 203 (338)
T ss_pred HHHHHHHHHH-HHh-CCCEEcCCCCCHHH-hccHHHHHHHHHHhcCCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEE
Confidence 3667777777 544 47899999999988 68999999999999966899999999999999999999999999999999
Q ss_pred EecCCCCccc----CCCC------CCccccccCCCCCcc-ccc-ccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHH
Q 023695 161 IEPTESPVLS----GGKP------GPHKIQGIGAGFVPG-VLE-VNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 228 (278)
Q Consensus 161 V~~~~~~~~~----~~~~------~~~~~~gl~~~~~~~-~~~-~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~ 228 (278)
|||.+++++. .+++ ..+..++++.+.... .+. .+.+|+.+.|+|+|++++++.|++++|+++||+||+
T Consensus 204 Vep~~~~~~~~s~~~g~~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~d~~v~Vsd~e~~~a~~~l~~~~gi~vepssaa 283 (338)
T PRK06608 204 SEPLNANDAYLSLKNNKIYRLNYSPNTIADGLKTLSVSARTFEYLKKLDDFYLVEEYEIYYWTAWLTHLLKVICEPSSAI 283 (338)
T ss_pred EeeCCChHHHHHHHcCCeEeCCCCCCCeecccCCCCCCHHHHHHHHhCCCEEEECHHHHHHHHHHHHHHcCcEEchHHHH
Confidence 9999997542 3332 134456766533211 121 134789999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCcC
Q 023695 229 AAAAAIEIAKRPENAGKLIVVIFPSFGER 257 (278)
Q Consensus 229 a~aa~~~~~~~~~~~~~~vv~i~~~gG~~ 257 (278)
+++++++++++. .++++||+|+ +||++
T Consensus 284 ~laa~~~~~~~~-~~~~~Vv~v~-tgg~~ 310 (338)
T PRK06608 284 NMVAVVNWLKTQ-SKPQKLLVIL-SGGNI 310 (338)
T ss_pred HHHHHHhhchhh-cCCCeEEEEe-CCCcc
Confidence 999999986653 3578899999 55764
No 33
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=4.7e-49 Score=360.31 Aligned_cols=259 Identities=22% Similarity=0.314 Sum_probs=217.6
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC-CCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD-PAK 79 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~-~~~ 79 (278)
||+|+|.+++.++.+ +.. .++||++|+||||+++|++|+++|++|+||||+++++.|+..++.|||+|+.+. ...
T Consensus 55 fK~RgA~~~i~~l~~-~~~---~~~Vv~aSsGN~g~alA~~a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~vv~v~~~g~ 130 (420)
T PRK08639 55 YKLRGAYNAISQLSD-EEL---AAGVVCASAGNHAQGVAYACRHLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVGD 130 (420)
T ss_pred cHHHHHHHHHHhCCH-Hhh---CCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHcCCCeeEEEEeCc
Confidence 899999999988532 221 157999999999999999999999999999999999999999999999754322 124
Q ss_pred ChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCC--CCEEEEecCCCccHHHHHHHHHhhCCCcE
Q 023695 80 GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGR--IDALVSGIGTGGTITGAGKFLKEKNPNIK 157 (278)
Q Consensus 80 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~--~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~ 157 (278)
+++++.+.+++++++. +++|++||+||.+ ++||+|+|+||++|+++. ||+||+|+|+||+++|++.++|+.+|+++
T Consensus 131 ~~~~a~~~a~~~a~~~-g~~~~~~~~~~~~-~~G~~tig~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~ 208 (420)
T PRK08639 131 TFDDSAAAAQEYAEET-GATFIPPFDDPDV-IAGQGTVAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTK 208 (420)
T ss_pred CHHHHHHHHHHHHHhc-CCcccCCCCChhH-hcchhHHHHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCE
Confidence 6899999999998885 7999999999988 789999999999999655 99999999999999999999999999999
Q ss_pred EEEEecCCCCccc----CCCC-----CCccccccCCCCC---cccccccccCeEEEeCHHHHHHHHHHHHHhcCceeecc
Q 023695 158 LYGIEPTESPVLS----GGKP-----GPHKIQGIGAGFV---PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGIS 225 (278)
Q Consensus 158 vigV~~~~~~~~~----~~~~-----~~~~~~gl~~~~~---~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~ 225 (278)
||||||++++++. .+.+ ..+.++|++.... ++.+.++++|+++.|+|+|+.++++.|++++|+++||+
T Consensus 209 vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~gi~v~~~g~~~~~~~~~~vd~~v~V~d~ei~~a~~~l~~~~gi~~e~s 288 (420)
T PRK08639 209 IIGVEPAGAASMKAALEAGKPVTLEKIDKFVDGAAVARVGDLTFEILKDVVDDVVLVPEGAVCTTILELYNKEGIVAEPA 288 (420)
T ss_pred EEEEEECCCCcHHHHHhCCCceeCCCCCCeecccccCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceecch
Confidence 9999999998764 2332 2345677765433 33345788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHHH
Q 023695 226 SGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 270 (278)
Q Consensus 226 sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 270 (278)
+|+++++++++.+. .++++||+|+ |||+.+++ .+.+++++
T Consensus 289 ga~~lAal~~~~~~--~~~~~vv~v~-sGgn~d~~--~~~~~~~~ 328 (420)
T PRK08639 289 GALSIAALELYKDE--IKGKTVVCVI-SGGNNDIE--RMPEIKER 328 (420)
T ss_pred HHHHHHHHHhhhhh--cCCCeEEEEe-CCCCCCHH--HHHHHHHH
Confidence 99999999886543 3678999999 88996554 55665544
No 34
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=2.5e-49 Score=351.23 Aligned_cols=248 Identities=21% Similarity=0.283 Sum_probs=210.9
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.+++. .++||++|+||||+|+|++|+.+|++|++|||+++++.|++.++.|||+|+.++. .
T Consensus 54 ~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~~~~--~ 127 (321)
T PRK07048 54 FKFRGAYNALSQFSPEQR----RAGVVTFSSGNHAQAIALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDR--Y 127 (321)
T ss_pred eeHHHHHHHHHhhhHhhc----CCcEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--C
Confidence 899999999999885433 1569999999999999999999999999999999999999999999999999996 4
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. +++|++||+|+.+ ..||+|+++||++|+ +.||+||+|+|+||+++|+++++|+.+++++||+
T Consensus 128 ~~~~~~~a~~l~~~~-g~~~~~~~~~~~~-~~g~~t~~~EI~~q~-~~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vig 204 (321)
T PRK07048 128 TEDREEIGRRLAEER-GLTLIPPYDHPHV-IAGQGTAAKELFEEV-GPLDALFVCLGGGGLLSGCALAARALSPGCKVYG 204 (321)
T ss_pred HHHHHHHHHHHHHhc-CCEEECCCCCcch-hhccchHHHHHHhhc-CCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEE
Confidence 677888889998885 7899999999987 789999999999999 4799999999999999999999999999999999
Q ss_pred EecCCCCcc----cCCCCC-----CccccccCCCC---CcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHH
Q 023695 161 IEPTESPVL----SGGKPG-----PHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 228 (278)
Q Consensus 161 V~~~~~~~~----~~~~~~-----~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~ 228 (278)
|||++++++ ..++.. .+..+++.... .......+++|+++.|+|+|+++++++|++++|+++||++++
T Consensus 205 vep~~~~~~~~s~~~g~~~~~~~~~tia~g~~~~~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~eps~a~ 284 (321)
T PRK07048 205 VEPEAGNDGQQSFRSGEIVHIDTPRTIADGAQTQHLGNYTFPIIRRLVDDIVTVSDAELVDAMRFFAERMKIVVEPTGCL 284 (321)
T ss_pred EeeCCChhHHHHHHcCCcccCCCCCCcccccccCCccHHHHHHHHHhCCceEEECHHHHHHHHHHHHHhCCceeccHHHH
Confidence 999998753 233321 12234433211 122234678999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCcCCcc
Q 023695 229 AAAAAIEIAKRPENAGKLIVVIFPSFGERYLS 260 (278)
Q Consensus 229 a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~ 260 (278)
++++++++.++ .++++||+|+ |||+.+++
T Consensus 285 ~laa~~~~~~~--~~~~~vv~i~-tGGn~~~~ 313 (321)
T PRK07048 285 GAAAALRGKVP--LKGKRVGVII-SGGNVDLA 313 (321)
T ss_pred HHHHHHhCchh--cCCCeEEEEe-CCCCCCHH
Confidence 99999987654 3678888888 78996554
No 35
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=2.4e-49 Score=351.18 Aligned_cols=257 Identities=19% Similarity=0.266 Sum_probs=216.1
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.++|.++.++|.. ++||++|+||||+|+|++|+++|++|+||||+++++.|+..|+.|||+|+.+++ +
T Consensus 49 ~K~R~a~~~i~~a~~~~~~----~gvv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~~~~--~ 122 (322)
T PRK07476 49 FKLRGATNALLSLSAQERA----RGVVTASTGNHGRALAYAARALGIRATICMSRLVPANKVDAIRALGAEVRIVGR--S 122 (322)
T ss_pred chHHHHHHHHHhhhhhhhC----CeEEEECCChHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEEEECC--C
Confidence 8999999999999998872 349999999999999999999999999999999999999999999999999985 5
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. +++|++||+||.+ +.||+++++||++|++ ++|+||+|+|+||+++|++++||..+|+++||+
T Consensus 123 ~~~~~~~a~~~~~~~-g~~~~~~~~n~~~-~~g~~t~~~Ei~~Q~~-~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vig 199 (322)
T PRK07476 123 QDDAQAEVERLVREE-GLTMVPPFDDPRI-IAGQGTIGLEILEALP-DVATVLVPLSGGGLASGVAAAVKAIRPAIRVIG 199 (322)
T ss_pred HHHHHHHHHHHHHhc-CCEEeCCCCCcce-eechhHHHHHHHHhCc-CCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEE
Confidence 788888899988875 7899999999998 7899999999999994 799999999999999999999999999999999
Q ss_pred EecCCCCccc----CCCC-----CCccccccCCC-----CCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccH
Q 023695 161 IEPTESPVLS----GGKP-----GPHKIQGIGAG-----FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISS 226 (278)
Q Consensus 161 V~~~~~~~~~----~~~~-----~~~~~~gl~~~-----~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~s 226 (278)
|||++++++. .+++ ..+..++++.+ ..+..+.+..+|+.+.|+|+|+++++++|++++|+++||++
T Consensus 200 Ve~~~~~~~~~s~~~g~~~~~~~~~t~a~~l~~~~~~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~ve~a~ 279 (322)
T PRK07476 200 VSMERGAAMHASLAAGRPVQVEEVPTLADSLGGGIGLDNRYTFAMCRALLDDVVLLDEAEIAAGIRHAYREERLVVEGAG 279 (322)
T ss_pred EEECCchHHHHHHHcCCceeCCCCCCccccccccccCCcHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHhcCceEeChh
Confidence 9999887543 2332 12334444322 12334456789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHHHh
Q 023695 227 GGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKEA 271 (278)
Q Consensus 227 g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~ 271 (278)
+++++++++. .....+++||+++ |||+ +|...|++++.+.
T Consensus 280 a~~laal~~~--~~~~~~~~Vvvi~-tGg~--~~~~~~~~~~~~~ 319 (322)
T PRK07476 280 AVGIAALLAG--KIAARDGPIVVVV-SGAN--IDMELHRRIINGE 319 (322)
T ss_pred HHHHHHHHhC--CcccCCCcEEEEE-CCCC--CCHHHHHHHHhhh
Confidence 9999998842 1122347888888 7888 4555777776553
No 36
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=3.1e-49 Score=360.99 Aligned_cols=248 Identities=25% Similarity=0.368 Sum_probs=215.5
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.+++. .++||++|+||||+++|++|+++|++|+||||++++..|+++++.|||+|+.++. +
T Consensus 52 ~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~~~~--~ 125 (404)
T PRK08198 52 FKIRGAYNKIASLSEEER----ARGVVAASAGNHAQGVAYAASLLGIKATIVMPETAPLSKVKATRSYGAEVVLHGD--V 125 (404)
T ss_pred CHHHHHHHHHHhccHhhc----CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--C
Confidence 899999999999886554 2679999999999999999999999999999999999999999999999999985 6
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. +++|++||+||.+ ++||+|+|+||++|+ +++|+||+|+|+||+++|++.+||+.+|+++|||
T Consensus 126 ~~~~~~~a~~~~~~~-g~~~~~~~~~~~~-~~g~~t~a~EI~~q~-~~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiig 202 (404)
T PRK08198 126 YDEALAKAQELAEET-GATFVHPFDDPDV-IAGQGTIGLEILEDL-PDVDTVVVPIGGGGLISGVATAVKALRPEVRVIG 202 (404)
T ss_pred HHHHHHHHHHHHHhc-CCEecCCCCCccH-HHHHHHHHHHHHHhC-CCCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEE
Confidence 899999999998885 7899999999988 789999999999999 4799999999999999999999999999999999
Q ss_pred EecCCCCccc----CCCCC-----CccccccCCCC---CcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHH
Q 023695 161 IEPTESPVLS----GGKPG-----PHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 228 (278)
Q Consensus 161 V~~~~~~~~~----~~~~~-----~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~ 228 (278)
|||++++++. .+++. .+..+|++... .++.+.++++|+++.|+|+|++++++.|++++|+++||++|+
T Consensus 203 Ve~~~~~~~~~~~~~g~~~~~~~~~t~a~g~~v~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~g~~~e~sga~ 282 (404)
T PRK08198 203 VQAEGAPAMPESLAAGRPVELESVDTIADGIAVKRPGDLTFEIIRELVDDVVTVSDEEIARAILLLLERAKLVVEGAGAV 282 (404)
T ss_pred EEeCCChHHHHHHHcCCCEecCCCCccccccccCCcCHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEEehHHHH
Confidence 9999998763 23332 23345554321 234455789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCcCCcc
Q 023695 229 AAAAAIEIAKRPENAGKLIVVIFPSFGERYLS 260 (278)
Q Consensus 229 a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~ 260 (278)
++|+++++.+. .+++++|+++ +||+.+++
T Consensus 283 ~lAal~~~~~~--~~~~~vv~vl-~ggn~~~~ 311 (404)
T PRK08198 283 SVAALLSGKLD--VKGKKVVAVL-SGGNIDVL 311 (404)
T ss_pred HHHHHHhchhh--cCCCeEEEEE-CCCCCCHH
Confidence 99999986532 3678899999 67886555
No 37
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=1.3e-48 Score=349.91 Aligned_cols=254 Identities=21% Similarity=0.262 Sum_probs=214.2
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEeCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDPAK 79 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~-~~~~~~~~~~~Ga~v~~~~~~~ 79 (278)
||||++.+++.++.++|. ++||++|+||||+|+|++|+++|++|+||||+.. ++.|+++++.+||+|+.+++
T Consensus 58 ~KdR~a~~~i~~a~~~g~-----~~vV~aSsGN~G~alA~~aa~~G~~~~vvvp~~~~~~~k~~~~~~~GA~V~~~~~-- 130 (352)
T PRK06721 58 FKDRGMVMAVAKAKEEGS-----EAIICASTGNTSASAAAYAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIEG-- 130 (352)
T ss_pred hHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECC--
Confidence 899999999999999986 6899999999999999999999999999999974 78999999999999999985
Q ss_pred ChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHH----HHHHhhC-C
Q 023695 80 GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAG----KFLKEKN-P 154 (278)
Q Consensus 80 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~----~~~k~~~-~ 154 (278)
+++++.+.+++++++. ++++++ +.||.+ ..||.++++||++|+++.||+||+|+|+||+++|++ +++|..+ |
T Consensus 131 ~~~~~~~~a~~~~~~~-~~~~~~-~~n~~~-~~G~~t~~~Ei~eq~~~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~ 207 (352)
T PRK06721 131 NFDDALKAVRNIAAEE-PITLVN-SVNPYR-IEGQKTAAFEICDQLQRAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYK 207 (352)
T ss_pred CHHHHHHHHHHHHHhC-Cceecc-CCCchh-hhhhhhHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCC
Confidence 6788888999998875 566665 568877 789999999999999667999999999999999855 4455554 8
Q ss_pred CcEEEEEecCCCCcccCCCCC---CccccccCCCCCccc------ccccccCeEEEeCHHHHHHHHHHHHHhcCceeecc
Q 023695 155 NIKLYGIEPTESPVLSGGKPG---PHKIQGIGAGFVPGV------LEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGIS 225 (278)
Q Consensus 155 ~~~vigV~~~~~~~~~~~~~~---~~~~~gl~~~~~~~~------~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~ 225 (278)
.++||+|||++++++..++.. .+..++++.+. |.. ....++|+++.|+|+|+++++++|++++||++||+
T Consensus 208 ~~~vigVep~~~~~~~~g~~~~~~~tia~~l~~~~-~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~eGi~veps 286 (352)
T PRK06721 208 KPRIHGFEAEGAAAIVKGHVIDEPETIATAIRIGN-PASWSYAVEAAEQSHGEIDMVSDEEILHAYRLLAKSEGVFAEPG 286 (352)
T ss_pred CCeEEEEecCCCChHhhCCcCCCCCceeeccccCC-CCCHHHHHHHHHhcCCEEEEECHHHHHHHHHHHHHhcCcccCch
Confidence 999999999999877655432 22334554332 211 12457899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCC-CCCCeEEEEecCCCcCCcchhhcH
Q 023695 226 SGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSSVLFE 265 (278)
Q Consensus 226 sg~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~~~~~ 265 (278)
+|+++++++++++++. .++++||+++|++|.||++...-+
T Consensus 287 sgaalaa~~~~~~~~~~~~~~~Vv~v~~g~g~k~~~~~~~~ 327 (352)
T PRK06721 287 SNASLAGVMKHVQSGKIKKGETVVAVLTGNGLKDPDIAISS 327 (352)
T ss_pred HHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCcCchHHHhhh
Confidence 9999999999987654 457899999999999999875534
No 38
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=8.5e-49 Score=357.25 Aligned_cols=256 Identities=22% Similarity=0.299 Sum_probs=219.4
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.+++. .+.||++|+||||+|+|++|+++|++|+||||+++++.|+++++.|||+|+.+++ +
T Consensus 53 ~KdR~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~--~ 126 (403)
T PRK07334 53 FKERGALNKLLLLTEEER----ARGVIAMSAGNHAQGVAYHAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVLHGE--T 126 (403)
T ss_pred chHHHHHHHHHhcCHHHh----CCcEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECc--C
Confidence 899999999998765432 1459999999999999999999999999999999999999999999999999975 6
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. +++|++||+||.+ .+||+|+++||++|+ +.||+||+|+|+|||++|++++||..+|++|||+
T Consensus 127 ~~~~~~~a~~l~~~~-~~~~~~~~~~~~~-~~g~~t~~~Ei~~q~-~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ 203 (403)
T PRK07334 127 LDEARAHARELAEEE-GLTFVHPYDDPAV-IAGQGTVALEMLEDA-PDLDTLVVPIGGGGLISGMATAAKALKPDIEIIG 203 (403)
T ss_pred HHHHHHHHHHHHHhc-CCEecCCCCCHHH-HHhHHHHHHHHHhcC-CCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 888999999998875 7899999999988 799999999999999 5799999999999999999999999999999999
Q ss_pred EecCCCCcccC---CCC----CCccccccCCC---CCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHH
Q 023695 161 IEPTESPVLSG---GKP----GPHKIQGIGAG---FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAA 230 (278)
Q Consensus 161 V~~~~~~~~~~---~~~----~~~~~~gl~~~---~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~ 230 (278)
|||++++++.. +.. .++.++|++.+ ..++.+..+++|+++.|+|+|++++++.|++++|+++||++|+++
T Consensus 204 ve~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~v~~s~a~~~ 283 (403)
T PRK07334 204 VQTELYPSMYAAIKGVALPCGGSTIAEGIAVKQPGQLTLEIVRRLVDDILLVSEADIEQAVSLLLEIEKTVVEGAGAAGL 283 (403)
T ss_pred EEECCCchHHHHHhCCCccCCCCCccceecCCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCEEechHHHHH
Confidence 99999987642 211 23566777742 345666778899999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHHH
Q 023695 231 AAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 270 (278)
Q Consensus 231 aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 270 (278)
++++++.++ .++++||+++ +||+. +..++.+++..
T Consensus 284 aa~~~~~~~--~~~~~vv~i~-~ggn~--d~~~l~~il~~ 318 (403)
T PRK07334 284 AALLAYPER--FRGRKVGLVL-SGGNI--DTRLLANVLLR 318 (403)
T ss_pred HHHHhCchh--cCCCeEEEEE-CCCCC--CHHHHHHHHHH
Confidence 999886554 3677899999 66774 33355554433
No 39
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=1.5e-48 Score=356.60 Aligned_cols=253 Identities=18% Similarity=0.232 Sum_probs=217.3
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.+|.++|. ++|+++|+||||+|+|++|+++|++|+||||+++++.|+.+++.|||+|+.+++ +
T Consensus 120 fKdRga~~~v~~A~~~g~-----~~vv~aSsGN~g~alA~~aa~~Gl~~~I~vP~~~~~~k~~~~~~~GA~Vi~v~g--~ 192 (421)
T PRK07591 120 FKDRVVSVALTAARELGF-----TTVACASTGNLANSVAAHAARAGLDSCVFIPADLEAGKIVGTLVYGPTLVAVDG--N 192 (421)
T ss_pred hHHHHHHHHHHHHHHcCC-----CEEEEeCCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--C
Confidence 899999999999999987 679999999999999999999999999999999999999999999999999996 6
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCC-CCEEEEecCCCccHHHHHHHHHhh-------
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGR-IDALVSGIGTGGTITGAGKFLKEK------- 152 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~-~d~iv~~vG~Gg~~aGi~~~~k~~------- 152 (278)
++++.+.+++++++.+++++++++.||.. ++|++|+++||++|+++. ||+||+|+|+||+++|++++|+++
T Consensus 193 ~d~a~~~a~~~~~~~~~~~~~n~~~~p~~-ieG~~Tia~Ei~eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~ 271 (421)
T PRK07591 193 YDDVNRLCSELANEHEGWGFVNINLRPYY-AEGSKTLGYEVAEQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVE 271 (421)
T ss_pred HHHHHHHHHHHHHhcCCEEEecCCCCccc-ccchHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCcc
Confidence 88899999999887657889998888887 789999999999999655 999999999999999999999997
Q ss_pred CCCcEEEEEecCCCCccc----CCCC------CCccccccCCCCCc-----ccccccccCeEEEeCHHHHHHHHHHHHHh
Q 023695 153 NPNIKLYGIEPTESPVLS----GGKP------GPHKIQGIGAGFVP-----GVLEVNIIDEVVQVSSDEAIETAKLLALK 217 (278)
Q Consensus 153 ~~~~~vigV~~~~~~~~~----~~~~------~~~~~~gl~~~~~~-----~~~~~~~~~~~~~v~d~e~~~a~~~l~~~ 217 (278)
.+.+|||+|||++++++. .+.. ..+..+++..+... ....+++.+.++.|+|+|++++++.|++.
T Consensus 272 ~~~prii~Vq~~g~~~~~~~~~~g~~~~~~~~~~tia~~l~~~~p~~~~~~~~~i~~~~g~~v~Vsd~ei~~a~~~la~~ 351 (421)
T PRK07591 272 DKPVRVFGAQAEGCSPIAQAFKEGRDVVKPVKPNTIAKSLAIGNPADGPYALDIARRTGGAIEDVTDEEIIEGIKLLART 351 (421)
T ss_pred CCCceEEEEecCCCCHHHHHHHcCCCcccCCCCCchhhheecCCCCCcHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhc
Confidence 578999999999987654 2221 12233444322111 11224667789999999999999999999
Q ss_pred cCceeeccHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCcCCcch
Q 023695 218 EGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSS 261 (278)
Q Consensus 218 ~Gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~ 261 (278)
+||++||+||+++++++++.+++. .++++||+++|++|+||++.
T Consensus 352 eGi~~epssaaalAal~~l~~~g~i~~~~~VV~i~tG~G~kd~~~ 396 (421)
T PRK07591 352 EGIFTETAGGVTVAVLKKLVEAGKIDPDEETVVYITGNGLKTLEA 396 (421)
T ss_pred CCeeecchHHHHHHHHHHHHHhCCCCCCCeEEEEeCCCccCCHHH
Confidence 999999999999999999988765 36789999997779998874
No 40
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=1.7e-48 Score=344.56 Aligned_cols=252 Identities=19% Similarity=0.241 Sum_probs=211.6
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.+... .++|+++|+||||+|+|++|+++|++|+||||+++++.|++.++.|||+|+.++. +
T Consensus 49 ~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~~~~--~ 122 (317)
T TIGR02991 49 FKLRGATNAVLSLSDTQR----AAGVVAASTGNHGRALAYAAAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVGR--S 122 (317)
T ss_pred cHHHHHHHHHHhhhHhcc----CCeEEEECCCHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEEEEeCC--C
Confidence 899999999998764322 1469999999999999999999999999999999999999999999999999996 5
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. +++|++||+||.+ ++||+|+++||++|+ +++|+||+|+|+||+++|++++||+.+|.+|||+
T Consensus 123 ~~~~~~~a~~~~~~~-g~~~~~~~~n~~~-~~g~~t~a~Ei~~q~-~~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vig 199 (317)
T TIGR02991 123 QDDAQEEVERLVADR-GLTMLPPFDHPDI-VAGQGTLGLEVVEQM-PDLATVLVPLSGGGLASGVAMAVKAARPDTRVIG 199 (317)
T ss_pred HHHHHHHHHHHHHhc-CCEeeCCCCChHH-HhhHHHHHHHHHHhC-CCCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEE
Confidence 788888899998875 7899999999998 789999999999999 4689999999999999999999999999999999
Q ss_pred EecCCCCccc----CCCC-----CCccccccC----C-CCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccH
Q 023695 161 IEPTESPVLS----GGKP-----GPHKIQGIG----A-GFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISS 226 (278)
Q Consensus 161 V~~~~~~~~~----~~~~-----~~~~~~gl~----~-~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~s 226 (278)
|||++++++. .+++ .++.+++++ . +..++.+..+++|+++.|+|+|++++++.|++++|+++||++
T Consensus 200 vep~~~~~~~~s~~~g~~~~~~~~~tia~~l~~g~~~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~g~~ve~s~ 279 (317)
T TIGR02991 200 VSMERGAAMKASLQAGRPVLVAELPTLADSLGGGIGLDNRVTFAMCKALLDEIVLVSEAEIAAGIRHAYAEEREIVEGAG 279 (317)
T ss_pred EEECCchHHHHHHHcCCcccCCCCCChhhhhhhccCCCCHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCcEEcchH
Confidence 9999887663 2332 223445442 1 123455567889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHH
Q 023695 227 GGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESV 267 (278)
Q Consensus 227 g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~ 267 (278)
++++|+++... . ..++++|+|+ |||+. |...+..+
T Consensus 280 a~~~Aal~~~~--~-~~~~~vvvvl-tG~n~--~~~~~~~~ 314 (317)
T TIGR02991 280 AVGIAALLAGK--I-KNPGPCAVIV-SGRNI--DMDLHKRI 314 (317)
T ss_pred HHHHHHHHcCc--c-ccCCcEEEEe-CCCCC--CHHHHHHH
Confidence 99999997421 1 2466888888 88884 44455544
No 41
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-48 Score=346.57 Aligned_cols=255 Identities=23% Similarity=0.284 Sum_probs=216.1
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.++|... +.|+++|+||||+|+|++|+++|++|+||||+++++.|+++++.|||+|+.+++ +
T Consensus 51 ~K~Rga~~~l~~a~~~~~~~---~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~--~ 125 (322)
T PRK06110 51 FKVRGGLVYFDRLARRGPRV---RGVISATRGNHGQSVAFAARRHGLAATIVVPHGNSVEKNAAMRALGAELIEHGE--D 125 (322)
T ss_pred cHHHHHHHHHHHhhhhcCCC---ceEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--C
Confidence 89999999999999887643 459999999999999999999999999999999999999999999999999974 6
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. ++||+++| ||.+ +.||.|+++||++|++ .+|+||+|+|+||+++|+++++|+.+|++|||+
T Consensus 126 ~~~~~~~a~~~~~~~-~~~~~~~~-~~~~-~~G~~t~~~Ei~~q~~-~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~ 201 (322)
T PRK06110 126 FQAAREEAARLAAER-GLHMVPSF-HPDL-VRGVATYALELFRAVP-DLDVVYVPIGMGSGICGAIAARDALGLKTRIVG 201 (322)
T ss_pred HHHHHHHHHHHHHhc-CCEEcCCC-CChH-HhccchHHHHHHhhCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 888888999988885 78999998 5665 6899999999999994 799999999999999999999999999999999
Q ss_pred EecCCCCccc----CCCCC-----CccccccCCCCC-c--ccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHH
Q 023695 161 IEPTESPVLS----GGKPG-----PHKIQGIGAGFV-P--GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 228 (278)
Q Consensus 161 V~~~~~~~~~----~~~~~-----~~~~~gl~~~~~-~--~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~ 228 (278)
|||++++++. .++.. .+..++++.... + +.+.++++|+++.|+|+|++++++.|++++|+++||++++
T Consensus 202 Vep~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~~~Vsd~e~~~a~~~l~~~~gi~~e~ssaa 281 (322)
T PRK06110 202 VVSAHAPAYALSFEAGRVVTTPVATTLADGMACRTPDPEALEVIRAGADRIVRVTDDEVAAAMRAYFTDTHNVAEGAGAA 281 (322)
T ss_pred EeeCCChHHHHHHHcCCcccCCCCCCcccccCCCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEehHHHH
Confidence 9999998753 33322 234455543221 2 1223588999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHH
Q 023695 229 AAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRK 269 (278)
Q Consensus 229 a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~ 269 (278)
++++++++.+. .++++||+|+ |||+.+++ .|.+++.
T Consensus 282 ~laa~~~~~~~--~~~~~Vv~i~-tGgn~d~~--~~~~~~~ 317 (322)
T PRK06110 282 ALAAALQERER--LAGKRVGLVL-SGGNIDRA--VFARVLA 317 (322)
T ss_pred HHHHHHhChhh--hCCCcEEEEE-CCCCCCHH--HHHHHHh
Confidence 99999986554 3577888888 88996554 6666554
No 42
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=3.5e-48 Score=347.82 Aligned_cols=251 Identities=21% Similarity=0.267 Sum_probs=213.6
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAK 79 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~-~~~~~~~~~~~~Ga~v~~~~~~~ 79 (278)
||||++.+++.+++++|. ++||++|+||||+++|++|+.+|++|+||||++ .+..|++.++.|||+|+.+++
T Consensus 61 fKdR~a~~~l~~a~~~g~-----~~iv~aSsGN~g~alA~~a~~~G~~~~ivvP~~~~~~~k~~~~~~~GA~Vi~~~~-- 133 (353)
T PRK07409 61 FKDRGMTMAVTKAKEEGA-----KAVICASTGNTSASAAAYAARAGLKAFVLIPEGKIALGKLAQAVMYGAEIIQIDG-- 133 (353)
T ss_pred hHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCchhhHHHHHhcCCEEEEECC--
Confidence 899999999999999886 689999999999999999999999999999997 588999999999999999996
Q ss_pred ChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCC-----
Q 023695 80 GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNP----- 154 (278)
Q Consensus 80 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~----- 154 (278)
+++++.+.++++++++ +++++++ .||.+ +.||.|+++||++|+++.||+||+|+|+||+++|++.+|+...+
T Consensus 134 ~~~~~~~~a~~l~~~~-~~~~~~~-~n~~~-~~g~~t~~~EI~~q~~~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~ 210 (353)
T PRK07409 134 NFDDALEIVRELAEKY-PVTLVNS-VNPYR-IEGQKTAAFEIVDALGDAPDYHCIPVGNAGNITAYWKGYKEYHQDGKST 210 (353)
T ss_pred CHHHHHHHHHHHHHhc-CceecCC-CCchh-hhhHHHHHHHHHHHhCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcc
Confidence 6888999999998876 4677765 58887 68999999999999966799999999999999999999998643
Q ss_pred -CcEEEEEecCCCCcccCCCCC---CccccccCCCCCcccc------cccccCeEEEeCHHHHHHHHHHHHHhcCceeec
Q 023695 155 -NIKLYGIEPTESPVLSGGKPG---PHKIQGIGAGFVPGVL------EVNIIDEVVQVSSDEAIETAKLLALKEGLFVGI 224 (278)
Q Consensus 155 -~~~vigV~~~~~~~~~~~~~~---~~~~~gl~~~~~~~~~------~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p 224 (278)
.+|||+|||.+++++..+++. .+..++++.+. |..+ .+++.++++.|+|+|+++++++|++++|+++||
T Consensus 211 ~~~kvigVep~g~~~~~~g~~~~~~~ti~~~l~~~~-~~~~~~~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~~egi~v~p 289 (353)
T PRK07409 211 KLPRMMGFQAAGAAPIVRGEPVKNPETIATAIRIGN-PASWDKAVAARDESGGLIDAVTDEEILEAYRLLARKEGVFCEP 289 (353)
T ss_pred CCCeEEEEecCCCChHhhCCcCCCCcceeeeeecCC-CCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhCCceeCc
Confidence 589999999999877655443 22334444331 2221 234556899999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCcCCcchh
Q 023695 225 SSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSSV 262 (278)
Q Consensus 225 ~sg~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~~ 262 (278)
++|+++++++++.+++. .++++||+++|++|+||+++.
T Consensus 290 ssa~alaa~~~~~~~~~~~~~~~VV~i~tg~g~k~~~~~ 328 (353)
T PRK07409 290 ASAASVAGLLKAIRAGKIPEGSTVVCTLTGNGLKDPDTA 328 (353)
T ss_pred hHHHHHHHHHHHHHcCCCCCCCcEEEEecCccccchHHH
Confidence 99999999999887643 357899999988899999853
No 43
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=2.9e-48 Score=343.54 Aligned_cols=244 Identities=25% Similarity=0.332 Sum_probs=208.8
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.++.. .++||++|+||||+|+|++|+++|++|+||||+++++.|+..++.+||+|+.+++ +
T Consensus 50 ~KdR~a~~~~~~l~~~~~----~~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~--~ 123 (317)
T PRK06815 50 FKFRGASNKLRLLNEAQR----QQGVITASSGNHGQGVALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGG--D 123 (317)
T ss_pred cHHHHHHHHHHhcchhhc----CceEEEECCChHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--C
Confidence 899999999987644321 1469999999999999999999999999999999999999999999999999996 5
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. +++|++||+||.+ +.||+++++||++|++ .||+||+|+|+||+++|++.+||+.+++++||+
T Consensus 124 ~~~~~~~a~~~~~~~-~~~~~~~~~~~~~-~~g~~t~a~Ei~~q~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vig 200 (317)
T PRK06815 124 ALNAELAARRAAEQQ-GKVYISPYNDPQV-IAGQGTIGMELVEQQP-DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIG 200 (317)
T ss_pred HHHHHHHHHHHHHhc-CCEEecCCCChhh-hcchhHHHHHHHHhcC-CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEE
Confidence 788888888888875 7889999999987 6899999999999995 699999999999999999999999999999999
Q ss_pred EecCCCCccc----CCCCC-----CccccccCCCCC----cccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHH
Q 023695 161 IEPTESPVLS----GGKPG-----PHKIQGIGAGFV----PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSG 227 (278)
Q Consensus 161 V~~~~~~~~~----~~~~~-----~~~~~gl~~~~~----~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg 227 (278)
|||++++++. .+++. .+.+++++.+.. +..+.++++|+++.|+|+|++++++.|++++||++||++|
T Consensus 201 Vep~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~~gi~vepssg 280 (317)
T PRK06815 201 CWPANSPSLYTSLEAGEIVEVAEQPTLSDGTAGGVEPGAITFPLCQQLIDQKVLVSEEEIKEAMRLIAETDRWLIEGAAG 280 (317)
T ss_pred EEeCCCCcHHHHHHCCCcccCCCCCChhhhhccCCcccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCeEecHHH
Confidence 9999998764 23321 234555543322 2234567899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 023695 228 GAAAAAIEIAKRPENAGKLIVVIFPSFGE 256 (278)
Q Consensus 228 ~a~aa~~~~~~~~~~~~~~vv~i~~~gG~ 256 (278)
+++++++++.++ .++++||+|+|+ |+
T Consensus 281 ~alaa~~~~~~~--~~~~~vv~i~tG-~~ 306 (317)
T PRK06815 281 VALAAALKLAPR--YQGKKVAVVLCG-KN 306 (317)
T ss_pred HHHHHHHhCchh--cCCCcEEEEECC-CC
Confidence 999999998765 367889999955 55
No 44
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=1.4e-47 Score=347.96 Aligned_cols=252 Identities=20% Similarity=0.231 Sum_probs=213.7
Q ss_pred CccHHHHHHHHH-----HHHcCCCCCCC----------------eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH
Q 023695 1 MLQKIGYSMISD-----AEAKGLITPGE----------------SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL 59 (278)
Q Consensus 1 ~K~R~a~~~l~~-----a~~~g~l~~g~----------------~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~ 59 (278)
||||++.++|.. +++.|.++|+. ++||++|+||||+|+|++|+.+|++|+||||+++++
T Consensus 109 fKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~ 188 (431)
T TIGR02035 109 IKARGGIYEVLKHAEELALEAGLLKLDDDYSILAEKKFKDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQ 188 (431)
T ss_pred cHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchhhhhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCH
Confidence 899999999875 77899988874 479999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCC--------CCCE
Q 023695 60 ERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG--------RIDA 131 (278)
Q Consensus 60 ~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~--------~~d~ 131 (278)
.|++.++.|||+|+.+++ +|+++.+.+++++++.+++|+++++ |+.+.++||+|+++||++|+++ .||+
T Consensus 189 ~K~~~ir~~GAeVv~~~~--~~~~a~~~A~~la~~~~~~~~~d~~-n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~ 265 (431)
T TIGR02035 189 WKKDKLRSKGVTVVEYES--DYGVAVEEGRKNADADPMCYFVDDE-NSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLF 265 (431)
T ss_pred HHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhcCCeEECCCC-CcccHHhhHHHHHHHHHHhhhccccccccCCCCE
Confidence 999999999999999996 7899999999999887667788874 5555689999999999999952 4779
Q ss_pred EEEecCCCccHHHHHHHHHhh-CCCcEEEEEecCCCCccc----CCCC-----------CCccccccCCCCCcc---ccc
Q 023695 132 LVSGIGTGGTITGAGKFLKEK-NPNIKLYGIEPTESPVLS----GGKP-----------GPHKIQGIGAGFVPG---VLE 192 (278)
Q Consensus 132 iv~~vG~Gg~~aGi~~~~k~~-~~~~~vigV~~~~~~~~~----~~~~-----------~~~~~~gl~~~~~~~---~~~ 192 (278)
|++|+|+||+++||+++||+. +++++||+|||++++++. .++. ..+.++||+.+..+. .+.
T Consensus 266 V~vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp~~s~~~~~s~~~g~~~~~~~~~~g~~~~T~AdGlav~~p~~~~~~~~ 345 (431)
T TIGR02035 266 VYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPCMLLGVYTGLHEKISVQDIGIDNITAADGLAVGRPSGFVGRLM 345 (431)
T ss_pred EEEEeCcCHHHHHHHHHHHHhcCCCCEEEEEeeCCCHHHHHHHhcCCCccccccccCCCCCceeccccCCCcchhHHHHH
Confidence 999999999999999999997 889999999999997642 2221 235567777654322 233
Q ss_pred ccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcC-----------C-CCCCeEEEEecCCCc
Q 023695 193 VNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP-----------E-NAGKLIVVIFPSFGE 256 (278)
Q Consensus 193 ~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~-----------~-~~~~~vv~i~~~gG~ 256 (278)
++++|+++.|+|+|+.++++.|++++|+++||+||++++++.++.+.. + .++.+.+++. |||.
T Consensus 346 ~~~vd~vv~VsD~ei~~a~~~L~~~egi~vEpSsaa~laa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-tg~~ 420 (431)
T TIGR02035 346 EPLLSGIYTVDDYTLYDLLRILAESEGKRLEPSALAGMEGPVRLLKYEDSYRYIEGRIGKNLNNATHVVWA-TGGG 420 (431)
T ss_pred HHhCCeEEEECHHHHHHHHHHHHHHcCCeEcHHHHHHHHHHHHHHhhhhhHHHHcCccccccCCCeEEEEe-cCCC
Confidence 568999999999999999999999999999999999999999887663 0 1456778888 5554
No 45
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-48 Score=334.72 Aligned_cols=250 Identities=23% Similarity=0.263 Sum_probs=221.6
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||.|++.+++.+.-++++ + ..++++|.||||+|+|++|+++|+|++||||..++..|++.++.+||+|+..+. +
T Consensus 96 FK~RGa~~~~~kla~~~~-~---~gViasSaGNha~a~Ayaa~~LgipaTIVmP~~tp~~kiq~~~nlGA~Vil~G~--~ 169 (457)
T KOG1250|consen 96 FKIRGAGNALQKLAKQQK-K---AGVIASSAGNHAQAAAYAARKLGIPATIVMPVATPLMKIQRCRNLGATVILSGE--D 169 (457)
T ss_pred eehhhHHHHHHHHHHhhh-c---CceEEecCccHHHHHHHHHHhcCCceEEEecCCChHHHHHHHhccCCEEEEecc--c
Confidence 899999999998877764 1 579999999999999999999999999999999999999999999999999985 7
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++...|.+++++. ++.|++|||+|+. ++|++|++.||.+|+...+++|+||||+||+++||+.++|...|+++|||
T Consensus 170 ~deAk~~a~~lAke~-gl~yI~pfDhP~I-~aGqgTig~EIl~ql~~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIG 247 (457)
T KOG1250|consen 170 WDEAKAFAKRLAKEN-GLTYIPPFDHPDI-WAGQGTIGLEILEQLKEPDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIG 247 (457)
T ss_pred HHHHHHHHHHHHHhc-CceecCCCCCchh-hcCcchHHHHHHHhhcCCCCeEEEecCCchhHHHHHHHHHHhCCCCceEE
Confidence 999999999999987 8999999999998 78999999999999966666999999999999999999999999999999
Q ss_pred EecCCCCccc----CCCCC-----CccccccCCCCC---cccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHH
Q 023695 161 IEPTESPVLS----GGKPG-----PHKIQGIGAGFV---PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 228 (278)
Q Consensus 161 V~~~~~~~~~----~~~~~-----~~~~~gl~~~~~---~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~ 228 (278)
||++++.++. .+++. .+.++|++...+ ++.+.+.++|+.+.|+|+|+..++.++.++|...+||++|+
T Consensus 248 VEt~~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~~~d~vvvV~~~ei~aaI~~l~edek~vvEpAgaa 327 (457)
T KOG1250|consen 248 VETEGAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQKLVDRVVVVEDDEIAAAILRLFEDEKMVVEPAGAA 327 (457)
T ss_pred EeecCcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHhcCceEEEeccHHHHHHHHHHHHhhhheeccchHH
Confidence 9999998764 45543 334577776543 44566889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCcCCcc
Q 023695 229 AAAAAIEIAKRPENAGKLIVVIFPSFGERYLS 260 (278)
Q Consensus 229 a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~ 260 (278)
++++++.. +....+++++|.++ +|++-..+
T Consensus 328 aLaai~~~-~~~~lk~~~vv~il-sG~n~~~~ 357 (457)
T KOG1250|consen 328 ALAAIYSG-KLNHLKGKKVVSIL-SGGNIDFD 357 (457)
T ss_pred HHHHHHhc-cccccCCceEEeec-ccCCCCcc
Confidence 99999987 54557889999998 67664333
No 46
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=1e-47 Score=346.30 Aligned_cols=237 Identities=21% Similarity=0.258 Sum_probs=204.5
Q ss_pred CccHHHHHHHHH-----HHHcCCCCCCC----------------eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH
Q 023695 1 MLQKIGYSMISD-----AEAKGLITPGE----------------SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL 59 (278)
Q Consensus 1 ~K~R~a~~~l~~-----a~~~g~l~~g~----------------~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~ 59 (278)
||||++.++|.. +++.|.++||. ++||++||||||+|+|++|+.+|++|+||||+++++
T Consensus 91 fKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~ 170 (404)
T cd06447 91 IKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEKFRKLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQ 170 (404)
T ss_pred hHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhhhhhhcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcH
Confidence 899999999864 78899999885 479999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCC---C-----CCE
Q 023695 60 ERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG---R-----IDA 131 (278)
Q Consensus 60 ~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~---~-----~d~ 131 (278)
.|++.|+.|||+|+.+++ +++++.+.+++++++.++.+|+++++++.. ++||+|+|+||++|+++ + ||+
T Consensus 171 ~K~~~ira~GAeVv~v~~--~~~~a~~~a~~la~~~~~~~~v~~~n~~~~-iaG~~T~g~EI~eQl~~~~~~vD~~~Pd~ 247 (404)
T cd06447 171 WKKDKLRSKGVTVVEYET--DYSKAVEEGRKQAAADPMCYFVDDENSRDL-FLGYAVAASRLKAQLAELGIKVDAEHPLF 247 (404)
T ss_pred HHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHHCCCeEeCCCCCchhH-HhhHHHHHHHHHHHhhhccCccccCCCCE
Confidence 999999999999999985 688999999999988766788999765554 89999999999999952 3 558
Q ss_pred EEEecCCCccHHHHHHHHHhh-CCCcEEEEEecCCCCccc----CCCC-----------CCccccccCCCCC---ccccc
Q 023695 132 LVSGIGTGGTITGAGKFLKEK-NPNIKLYGIEPTESPVLS----GGKP-----------GPHKIQGIGAGFV---PGVLE 192 (278)
Q Consensus 132 iv~~vG~Gg~~aGi~~~~k~~-~~~~~vigV~~~~~~~~~----~~~~-----------~~~~~~gl~~~~~---~~~~~ 192 (278)
||+|+|+||+++|++++||+. .|+++||+|||++++.+. .+.. ..+.++||+.+.. ++.+.
T Consensus 248 VvvpvG~GGli~GIa~~lK~~~~p~~kVigVeP~~ap~~~~s~~ag~~~~~~~~~~g~~~~TiadGl~~~~p~~~~~~~~ 327 (404)
T cd06447 248 VYLPCGVGGAPGGVAFGLKLIFGDNVHCFFAEPTHSPCMLLGMATGLHDKISVQDIGIDNRTAADGLAVGRPSGLVGKLM 327 (404)
T ss_pred EEEecCccHHHHHHHHHHHHhcCCCCEEEEEccCCChHHHHHHHcCCCccccccccCCCccchhhhhcCCCcchhHHHHH
Confidence 999999999999999999997 789999999999987652 2222 2244566665432 23334
Q ss_pred ccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcC
Q 023695 193 VNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 240 (278)
Q Consensus 193 ~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~ 240 (278)
++.+|+++.|+|+|+.++++.|++++|+++||+||+++++++++.++.
T Consensus 328 ~~~vd~~v~Vsd~ei~~a~r~La~~~gi~vepSgAa~lAAl~~~~~~~ 375 (404)
T cd06447 328 EPLLSGIYTVEDDELYRLLAMLKDSENIEVEPSAAAGFTGPAQVLSEA 375 (404)
T ss_pred HHhCCcEEEECHHHHHHHHHHHHHHcCcEEeHHHHHHHHHHHHHHHhh
Confidence 678999999999999999999999999999999999999999987764
No 47
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=1.6e-47 Score=340.47 Aligned_cols=248 Identities=23% Similarity=0.266 Sum_probs=213.2
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.+++++|. ++|+++|+||||+|+|++|+.+|++|++|||+++++.|+++|+.+||+|+.++. +
T Consensus 53 ~K~R~a~~~l~~a~~~g~-----~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~Vi~~~~--~ 125 (324)
T cd01563 53 FKDRGMTVAVSKAKELGV-----KAVACASTGNTSASLAAYAARAGIKCVVFLPAGKALGKLAQALAYGATVLAVEG--N 125 (324)
T ss_pred HHHhhHHHHHHHHHHcCC-----CEEEEeCCCHHHHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHcCCEEEEECC--c
Confidence 799999999999999885 689999999999999999999999999999999999999999999999999986 5
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCC-CCCEEEEecCCCccHHHHHHHHHhhC------
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG-RIDALVSGIGTGGTITGAGKFLKEKN------ 153 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~-~~d~iv~~vG~Gg~~aGi~~~~k~~~------ 153 (278)
++++.+.+++++++. .+|++||+|+.+ ..||.+++.||++|+++ .||+||+|+||||+++|++.+||...
T Consensus 126 ~~~~~~~a~~~~~~~--~~~~~~~~n~~~-~~g~~t~~~Ei~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~ 202 (324)
T cd01563 126 FDDALRLVRELAEEN--WIYLSNSLNPYR-LEGQKTIAFEIAEQLGWEVPDYVVVPVGNGGNITAIWKGFKELKELGLID 202 (324)
T ss_pred HHHHHHHHHHHHHhc--CeeccCCCCcce-ecchhhhHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccc
Confidence 788888999988874 789999999998 67999999999999963 69999999999999999999999875
Q ss_pred CCcEEEEEecCCCCccc----CCCC-------CCccccccCCCCCc---c--cccccccCeEEEeCHHHHHHHHHHHHHh
Q 023695 154 PNIKLYGIEPTESPVLS----GGKP-------GPHKIQGIGAGFVP---G--VLEVNIIDEVVQVSSDEAIETAKLLALK 217 (278)
Q Consensus 154 ~~~~vigV~~~~~~~~~----~~~~-------~~~~~~gl~~~~~~---~--~~~~~~~~~~~~v~d~e~~~a~~~l~~~ 217 (278)
++++||+|||.+++.+. .+.. ..+.+++++.+..+ . .+.+++.++++.|+|+|++++++.|+++
T Consensus 203 ~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~ 282 (324)
T cd01563 203 RLPRMVGVQAEGAAPIVRAFKEGKDDIEPVENPETIATAIRIGNPASGPKALRAVRESGGTAVAVSDEEILEAQKLLART 282 (324)
T ss_pred cCCeEEEEecCCCCHHHHHHHcCCCccCcCCCCCceeeeeecCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhc
Confidence 57999999999987552 2211 12334566543211 1 1224567899999999999999999999
Q ss_pred cCceeeccHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCcCC
Q 023695 218 EGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERY 258 (278)
Q Consensus 218 ~Gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~~ 258 (278)
+|+++||+||+++++++++.+++. .++++||+++|++|.|.
T Consensus 283 ~gi~~~pssa~alaa~~~l~~~~~~~~~~~Vv~v~tg~g~~~ 324 (324)
T cd01563 283 EGIFVEPASAASLAGLKKLREEGIIDKGERVVVVLTGHGLKD 324 (324)
T ss_pred CCceeCchHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCccCC
Confidence 999999999999999999987753 35789999999999863
No 48
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=5.3e-48 Score=340.58 Aligned_cols=244 Identities=23% Similarity=0.326 Sum_probs=206.9
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.+ + + ++||++|+||||+|+|++|+++|++|+||||+++++.|+.+++.|||+|+.+++ +
T Consensus 52 ~K~R~a~~~~~~~~~-~----~-~~vv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~ 123 (310)
T PRK08246 52 FKARGAFNRLLAAPV-P----A-AGVVAASGGNAGLAVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGA--E 123 (310)
T ss_pred CHHHHHHHHHHhhcc-c----C-CeEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEeCC--C
Confidence 899999999988765 2 2 579999999999999999999999999999999999999999999999999986 5
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. +++|++||+||.+ +.||+|+++||++|+ +.||+||+|+|+||+++|++.+|+. .++||+
T Consensus 124 ~~~~~~~a~~~~~~~-g~~~~~~~~n~~~-i~g~~t~~~Ei~eq~-~~~D~iv~~vG~GG~~~Gi~~~~~~---~~~vi~ 197 (310)
T PRK08246 124 YADALEAAQAFAAET-GALLCHAYDQPEV-LAGAGTLGLEIEEQA-PGVDTVLVAVGGGGLIAGIAAWFEG---RARVVA 197 (310)
T ss_pred HHHHHHHHHHHHHhc-CCEeCCCCCChhh-hcchHHHHHHHHHhc-CCCCEEEEecCccHHHHHHHHHhcC---CCEEEE
Confidence 788888898888875 8899999999998 789999999999999 5799999999999999999999974 489999
Q ss_pred EecCCCCccc----CCCCCCccc-----cccCCCCC---cccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHH
Q 023695 161 IEPTESPVLS----GGKPGPHKI-----QGIGAGFV---PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 228 (278)
Q Consensus 161 V~~~~~~~~~----~~~~~~~~~-----~gl~~~~~---~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~ 228 (278)
|||++++++. .+++..+.. ++++.+.. ++.+.++++|+++.|+|+|++++++.|++++|+++||++|+
T Consensus 198 ve~~~~~~~~~s~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Vsd~e~~~a~~~l~~~egi~~e~s~aa 277 (310)
T PRK08246 198 VEPEGAPTLHAALAAGEPVDVPVSGIAADSLGARRVGEIAFALARAHVVTSVLVSDEAIIAARRALWEELRLAVEPGAAT 277 (310)
T ss_pred EeeCCChHHHHHHHcCCcccCCCCCceeccccCCCccHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHcCceeehHHHH
Confidence 9999998664 344433322 33443332 33355788999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCcCCcc
Q 023695 229 AAAAAIEIAKRPENAGKLIVVIFPSFGERYLS 260 (278)
Q Consensus 229 a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~ 260 (278)
+++++++...+. .++++||+|+ +||+.+++
T Consensus 278 ~lAa~~~~~~~~-~~~~~vv~i~-~g~n~d~~ 307 (310)
T PRK08246 278 ALAALLSGAYVP-APGERVAVVL-CGANTDPA 307 (310)
T ss_pred HHHHHHhCCccc-cCCCeEEEEE-CCCCCChh
Confidence 999987543321 3567888888 77886554
No 49
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=1.9e-47 Score=339.17 Aligned_cols=246 Identities=21% Similarity=0.256 Sum_probs=206.2
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.+++++|. ++|+++|+||||+|+|++|+.+|++|+||||..++..|+++++.|||+|+.+++ +
T Consensus 46 ~K~R~a~~~l~~a~~~g~-----~~lv~aSsGN~g~alA~~aa~~G~~~~ivvp~~~~~~~~~~l~~~GA~V~~~~~--~ 118 (319)
T PRK06381 46 QKDRIAEAHVRRAMRLGY-----SGITVGTCGNYGASIAYFARLYGLKAVIFIPRSYSNSRVKEMEKYGAEIIYVDG--K 118 (319)
T ss_pred cHHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEcCC--C
Confidence 899999999999999987 789999999999999999999999999999999999999999999999999996 5
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCC-CCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhh------C
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFE-NPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEK------N 153 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~------~ 153 (278)
++++.+.+++++++. ++|++++++ ||...+.||.++++||++|++..||+||+|+|+||+++|++++||+. +
T Consensus 119 ~~~~~~~a~~~~~~~-~~~~~~~~~~n~~~~~~G~~t~a~Ei~~ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~ 197 (319)
T PRK06381 119 YEEAVERSRKFAKEN-GIYDANPGSVNSVVDIEAYSAIAYEIYEALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTS 197 (319)
T ss_pred HHHHHHHHHHHHHHc-CcEecCCCCCCcchHhhhHHHHHHHHHHHhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcC
Confidence 788888999888874 788888886 76323789999999999999657999999999999999999999998 7
Q ss_pred CCcEEEEEecCCCCccc----CCCCC--C---ccc-c-ccCCCCC---------cccccccccCeEEEeCHHHHHHHHHH
Q 023695 154 PNIKLYGIEPTESPVLS----GGKPG--P---HKI-Q-GIGAGFV---------PGVLEVNIIDEVVQVSSDEAIETAKL 213 (278)
Q Consensus 154 ~~~~vigV~~~~~~~~~----~~~~~--~---~~~-~-gl~~~~~---------~~~~~~~~~~~~~~v~d~e~~~a~~~ 213 (278)
+.++||+|||.+++++. .+... . ..+ + .++.+.. ...+..++.++++.|+|+|+++++++
T Consensus 198 ~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~d~e~~~a~~~ 277 (319)
T PRK06381 198 RMPRMIGVSTSGGNQIVESFKRGSSEVVDLEVDEIRETAVNEPLVSYRSFDGDNALEAIYDSHGYAFGFSDDEMVKYAEL 277 (319)
T ss_pred CCCEEEEEeeCCCCHHHHHHHcCCCcccCCCcchhhhcccCCCcccccCCCHHHHHHHHHHcCCEEEEECHHHHHHHHHH
Confidence 89999999999986553 22111 0 011 1 1111110 01123466779999999999999999
Q ss_pred HHHhcCceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 023695 214 LALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGE 256 (278)
Q Consensus 214 l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~ 256 (278)
|++++||++||++|+++++++++++++.. +++||+++ |||.
T Consensus 278 la~~egi~~epssa~alaa~~~~~~~~~~-~~~vv~i~-tGg~ 318 (319)
T PRK06381 278 LRRMEGLNALPASASALAALVKYLKKNGV-NDNVVAVI-TGRR 318 (319)
T ss_pred HHHhCCcccCchHHHHHHHHHHHHHcCCC-CCcEEEEe-cCCC
Confidence 99999999999999999999999887653 37888888 7775
No 50
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=1.6e-47 Score=337.81 Aligned_cols=244 Identities=26% Similarity=0.361 Sum_probs=212.3
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.+++++|. + ++||++|+||||+|+|++|+++|++|++|||++.+..|+++|+.+||+|+.+++ +
T Consensus 47 ~Kdr~a~~~l~~~~~~~~---~-~~iv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~~~~--~ 120 (304)
T cd01562 47 FKIRGAYNKLLSLSEEER---A-KGVVAASAGNHAQGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYGE--D 120 (304)
T ss_pred cHHHhHHHHHHhcCHhhc---C-CcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--C
Confidence 799999999999988772 1 469999999999999999999999999999999999999999999999999997 5
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. +++|++|++|+.+ ..||.++++||++|+. .||+||+|+|||||++|++++||..++.+|||+
T Consensus 121 ~~~~~~~a~~la~~~-~~~~~~~~~n~~~-~~g~~~~~~Ei~~q~~-~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvig 197 (304)
T cd01562 121 FDEAEAKARELAEEE-GLTFIHPFDDPDV-IAGQGTIGLEILEQVP-DLDAVFVPVGGGGLIAGIATAVKALSPNTKVIG 197 (304)
T ss_pred HHHHHHHHHHHHHhc-CCEEeCCCCCcch-hccHHHHHHHHHHhcC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 888999999999885 7899999999987 7899999999999995 599999999999999999999999999999999
Q ss_pred EecCCCCccc----CCCCC-----CccccccCCCCC---cccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHH
Q 023695 161 IEPTESPVLS----GGKPG-----PHKIQGIGAGFV---PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 228 (278)
Q Consensus 161 V~~~~~~~~~----~~~~~-----~~~~~gl~~~~~---~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~ 228 (278)
|+|.+++.+. .+... .+...+++.+.. ++.+..+++|.++.|+|+|+++++++|++++|+++||+||+
T Consensus 198 v~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~ 277 (304)
T cd01562 198 VEPEGAPAMAQSLAAGKPVTLPEVDTIADGLAVKRPGELTFEIIRKLVDDVVTVSEDEIAAAMLLLFEREKLVAEPAGAL 277 (304)
T ss_pred EEECCCchHHHHHHcCCcccCCCCCcccccccCCCchHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCceEchhHHH
Confidence 9999987653 22221 223345543321 23345678999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 023695 229 AAAAAIEIAKRPENAGKLIVVIFPSFGE 256 (278)
Q Consensus 229 a~aa~~~~~~~~~~~~~~vv~i~~~gG~ 256 (278)
++++++++.++. ++++||+|+ +||+
T Consensus 278 a~a~~~~~~~~~--~~~~vv~i~-tGG~ 302 (304)
T cd01562 278 ALAALLSGKLDL--KGKKVVVVL-SGGN 302 (304)
T ss_pred HHHHHHhCcccc--CCCeEEEEe-cCCC
Confidence 999999987764 677888888 7776
No 51
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-47 Score=311.23 Aligned_cols=249 Identities=23% Similarity=0.307 Sum_probs=215.3
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||.|+|.+.+..+.++.+- +.+++.||||||.|+|++|+.+|+|++||||.+++..|+..++.||++|+++++ .
T Consensus 55 FKfRGAlNav~~l~~ek~~----kgvithSSGNHaqAlalaAk~~giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~--~ 128 (323)
T KOG1251|consen 55 FKFRGALNAVSSLKAEKRA----KGVITHSSGNHAQALALAAKILGIPATIVVPKDAPICKVAATRGYGANIIFCEP--T 128 (323)
T ss_pred eehhhhHHHHHHhhHhhhc----CceEeecCCcHHHHHHHHHHhcCCCeEEEecCCChHHHHHHHHhcCceEEEecC--c
Confidence 8999999999988744331 569999999999999999999999999999999999999999999999999997 3
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
.+++.+.+.++.++. +++.++||++|.. +.|++|+++|+++|+ +.+|++|+|+|+||+++|++...|.+.|+++|++
T Consensus 129 ~~sRE~va~~ltee~-g~~~i~Py~~p~v-IaGqgTiA~ElleqV-g~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~ 205 (323)
T KOG1251|consen 129 VESRESVAKDLTEET-GYYLIHPYNHPSV-IAGQGTIALELLEQV-GEIDALFVPVGGGGLLSGVALAAKSLKPSIEVYA 205 (323)
T ss_pred cchHHHHHHHHHHhc-CcEEeCCCCCcce-eeccchHHHHHHHhh-CccceEEEeecCcchhhHHHHHHhccCCCcEEEE
Confidence 467888899999987 8899999999998 899999999999999 5899999999999999999999999999999999
Q ss_pred EecCCCCcc----cCCCC-----CCccccccCCC---CCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHH
Q 023695 161 IEPTESPVL----SGGKP-----GPHKIQGIGAG---FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 228 (278)
Q Consensus 161 V~~~~~~~~----~~~~~-----~~~~~~gl~~~---~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~ 228 (278)
|||+..+.- ..|+. ..+..+|.-.. ..+|.+.++++|++++|+|+|+.++++.++++..+.+||+++.
T Consensus 206 veP~~a~d~~qsf~~g~I~~l~tp~TIADG~r~~~lG~~t~pIir~~vddi~Tv~e~Ei~~~lk~~~ermK~~vEPTa~l 285 (323)
T KOG1251|consen 206 VEPEAADDGQQSFLKGKIVHLDTPKTIADGVRTSHLGPLTWPIIRDLVDDILTVSEDEIKEALKLIWERMKVVVEPTAAL 285 (323)
T ss_pred ecCcccchHHHHHhcCCeEecCCchhhhhhhhhccccccchHHHHHHhhhheeecHHHHHHHHHHHHHHHheeeccchhH
Confidence 999887632 22322 12333444332 3567778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCcCCcch
Q 023695 229 AAAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 261 (278)
Q Consensus 229 a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 261 (278)
+||+++-.-.+ ...+++.+|+ +|||.++..
T Consensus 286 gfAavl~~k~~--~~~K~igIiL-sGGNVD~~~ 315 (323)
T KOG1251|consen 286 GFAAVLSHKFA--LNIKRIGIIL-SGGNVDLNS 315 (323)
T ss_pred HHHHHHhhhHH--hccCceEEEE-eCCcccccc
Confidence 99998865443 3578888888 999976663
No 52
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=1.1e-46 Score=342.78 Aligned_cols=250 Identities=23% Similarity=0.232 Sum_probs=212.9
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAK 79 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~-~~~~~~~~~~~~Ga~v~~~~~~~ 79 (278)
||||++.++|.+++++|. ++|+++|+||||+|+|++|+++|++|+||||++ ++..|+.+++.|||+|+.+++
T Consensus 98 fKdRga~~~v~~a~~~g~-----~~vv~aSsGN~g~alA~~aa~~G~~~~i~vP~~~~~~~k~~~~~~~GA~vi~v~~-- 170 (397)
T PRK06260 98 FKDRGMTVGVTKALELGV-----KTVACASTGNTSASLAAYAARAGLKCYVLLPAGKVALGKLAQALLHGAKVLEVDG-- 170 (397)
T ss_pred cHHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHHHHcCCcEEEEEeCCCccHHHHHHHHhcCCEEEEECC--
Confidence 899999999999999987 689999999999999999999999999999997 789999999999999999986
Q ss_pred ChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCC-CCCEEEEecCCCccHHHHHHHHHhhC-----
Q 023695 80 GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG-RIDALVSGIGTGGTITGAGKFLKEKN----- 153 (278)
Q Consensus 80 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~-~~d~iv~~vG~Gg~~aGi~~~~k~~~----- 153 (278)
+++++.+.+++++++. ++|+++++ ||.+ ++||+|+++||++|+++ .||+||+|+|+||+++|++++|++..
T Consensus 171 ~~~~~~~~a~~~~~~~-g~y~~~~~-np~~-~~G~~t~a~Ei~eQl~~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i 247 (397)
T PRK06260 171 NFDDALDMVVELAKEG-KIYLLNSI-NPFR-LEGQKTIGFEIADQLGWEVPDRVVLPVGNAGNISAIWKGFKELVELGII 247 (397)
T ss_pred cHHHHHHHHHHHHhhC-CEEeecCC-Cchh-hcchhhHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCc
Confidence 6888999999988875 78888887 8888 78999999999999966 69999999999999999999999875
Q ss_pred -CCcEEEEEecCCCCccc----CCCCC-------CccccccCCCCCccc------ccccccCeEEEeCHHHHHHHHHHHH
Q 023695 154 -PNIKLYGIEPTESPVLS----GGKPG-------PHKIQGIGAGFVPGV------LEVNIIDEVVQVSSDEAIETAKLLA 215 (278)
Q Consensus 154 -~~~~vigV~~~~~~~~~----~~~~~-------~~~~~gl~~~~~~~~------~~~~~~~~~~~v~d~e~~~a~~~l~ 215 (278)
..+|||+|||++++++. .+... .+..+++..+. |.. ..++..+.++.|+|+|++++++.|+
T Consensus 248 ~~~prii~Vq~~g~~~~~~a~~~g~~~~~~~~~~~tia~~i~i~~-p~~~~~~~~~l~~~~g~~v~V~d~e~~~a~~~la 326 (397)
T PRK06260 248 DKLPKMTGIQAEGAAPIVEAIKKGKDEIEPVENPETVATAIRIGN-PVNAPKALRAIRESGGTAEAVSDEEILDAQKLLA 326 (397)
T ss_pred CCCCeEEEEecCCCcHHHHHHHcCCCcccccCCCCceeeeeEeCC-CCCHHHHHHHHHHHCCEEEEECHHHHHHHHHHHH
Confidence 34799999999997653 22221 12233332211 111 2245567899999999999999999
Q ss_pred HhcCceeeccHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCcCCcch
Q 023695 216 LKEGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSS 261 (278)
Q Consensus 216 ~~~Gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~ 261 (278)
+++|+++||+||+++++++++.+++. .++++||+++|++|.|+.+.
T Consensus 327 ~~eGi~vepssaaalAa~~~l~~~g~i~~~~~VV~i~tG~glK~~~~ 373 (397)
T PRK06260 327 RKEGIGVEPASAASVAGLIKLVEEGVIDKDERVVCITTGHLLKDPDA 373 (397)
T ss_pred HhCCCeeCchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccCchHH
Confidence 99999999999999999999988764 46789999999999988764
No 53
>PLN02569 threonine synthase
Probab=100.00 E-value=1.6e-46 Score=345.98 Aligned_cols=254 Identities=19% Similarity=0.166 Sum_probs=215.0
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAK 79 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~-~~~~~~~~~~~~Ga~v~~~~~~~ 79 (278)
||||++..++..+.+.|........|+++|+||||.|+|++|+.+|++|+||||++ .+..|+.+++.|||+|+.+++
T Consensus 165 FKDRga~~~vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlAayaa~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi~v~g-- 242 (484)
T PLN02569 165 FKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSAYCAAAGIPSIVFLPADKISIAQLVQPIANGALVLSIDT-- 242 (484)
T ss_pred HHHHHHHHHHHHHHHhhhccCCccEEEEeCCcHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHhcCCEEEEECC--
Confidence 89999999999999877632222569999999999999999999999999999996 788999999999999999997
Q ss_pred ChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCC-CCEEEEecCCCccHHHHHHHHHhhC-----
Q 023695 80 GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGR-IDALVSGIGTGGTITGAGKFLKEKN----- 153 (278)
Q Consensus 80 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~-~d~iv~~vG~Gg~~aGi~~~~k~~~----- 153 (278)
+++++++.+++++++. ++|+++++ ||.+ ++||+|+++||++|++++ ||+||+|+|+||+++|++++||++.
T Consensus 243 ~~d~a~~~a~e~~~~~-~~~~~n~~-Np~~-ieG~kT~a~EI~eQl~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i 319 (484)
T PLN02569 243 DFDGCMRLIREVTAEL-PIYLANSL-NSLR-LEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLV 319 (484)
T ss_pred CHHHHHHHHHHHHHHc-CCEecCCC-Ccch-hHhHHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCC
Confidence 7899999999988876 68889988 8888 789999999999999765 9999999999999999999999863
Q ss_pred -CCcEEEEEecCCCCccc----CCCC-------CCccccccCCCCCccccc------ccccCeEEEeCHHHHHHHHHHHH
Q 023695 154 -PNIKLYGIEPTESPVLS----GGKP-------GPHKIQGIGAGFVPGVLE------VNIIDEVVQVSSDEAIETAKLLA 215 (278)
Q Consensus 154 -~~~~vigV~~~~~~~~~----~~~~-------~~~~~~gl~~~~~~~~~~------~~~~~~~~~v~d~e~~~a~~~l~ 215 (278)
+.+|||+|||++++++. .+.. .++.++++..+ .|..+. .+.-+.++.|+|+|++++++. +
T Consensus 320 ~~~Priv~Vqa~g~~pl~~a~~~G~~~~~~~~~~~T~A~gi~i~-~P~~~~~~l~al~~s~g~~v~VsDeEi~~a~~~-a 397 (484)
T PLN02569 320 DRLPRLVCAQAANANPLYRAYKSGWEEFKPVKANPTFASAIQIG-DPVSIDRAVYALKESNGIVEEATEEELMDAQAE-A 397 (484)
T ss_pred CCCCeEEEEeeCCCcHHHHHHHcCCCccccCCCCCccchhhccC-CCccHHHHHHHHHHhCCEEEEECHHHHHHHHHH-H
Confidence 46799999999997664 2221 23455666544 233221 223345799999999999999 8
Q ss_pred HhcCceeeccHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCcCCcch
Q 023695 216 LKEGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSS 261 (278)
Q Consensus 216 ~~~Gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~ 261 (278)
+++||++||+||++++++.++.+++. .++++||+++|++|.||.+.
T Consensus 398 ~~~Gi~vepssAaalAal~kl~~~g~i~~~~~VV~i~Tg~GlK~~~~ 444 (484)
T PLN02569 398 DKTGMFLCPHTGVALAALKKLRASGVIGPTDRTVVVSTAHGLKFTQS 444 (484)
T ss_pred HHCCcEECchHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCcccChhH
Confidence 99999999999999999999988764 46789999999999999874
No 54
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=1.2e-46 Score=334.35 Aligned_cols=237 Identities=21% Similarity=0.198 Sum_probs=197.5
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.++|. ++|+++|+||||.|+|++|+++|++|+||||+++++.|+.+|+.|||+|+.+++ +
T Consensus 80 fKDRga~~~i~~a~~~g~-----~~vv~aSsGN~g~slA~~aa~~G~~~~i~vP~~~~~~k~~~i~~~GA~vi~v~~--~ 152 (338)
T PRK06450 80 YKDRGSVTLISYLAEKGI-----KQISEDSSGNAGASIAAYGAAAGIEVKIFVPETASGGKLKQIESYGAEVVRVRG--S 152 (338)
T ss_pred CHHHHHHHHHHHHHHcCC-----CEEEEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--C
Confidence 899999999999999886 689999999999999999999999999999999999999999999999999996 5
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCC-CCCEEEEecCCCccHHHHHHHHHhhCC-----
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG-RIDALVSGIGTGGTITGAGKFLKEKNP----- 154 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~-~~d~iv~~vG~Gg~~aGi~~~~k~~~~----- 154 (278)
++++.+. +++. +.+|++++.||.+ ++||+|+++||++|+++ .||+||+|+|+||+++|++++|+++.+
T Consensus 153 ~~~~~~~----a~~~-g~~~~~~~~np~~-ieG~kTia~EI~eql~~~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~ 226 (338)
T PRK06450 153 REDVAKA----AENS-GYYYASHVLQPQF-RDGIRTLAYEIAKDLDWKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVIS 226 (338)
T ss_pred HHHHHHH----HHhc-CeEeccCCCCccH-HHHHHHHHHHHHHHcCCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCcc
Confidence 6655443 4443 6788999999998 78999999999999964 599999999999999999999998764
Q ss_pred -CcEEEEEecCCCCccc----CCCCC-----CccccccCCCCCcccc------cccccCeEEEeCHHHHHHHHHHHHHhc
Q 023695 155 -NIKLYGIEPTESPVLS----GGKPG-----PHKIQGIGAGFVPGVL------EVNIIDEVVQVSSDEAIETAKLLALKE 218 (278)
Q Consensus 155 -~~~vigV~~~~~~~~~----~~~~~-----~~~~~gl~~~~~~~~~------~~~~~~~~~~v~d~e~~~a~~~l~~~~ 218 (278)
.+|||+|||++++++. +..+. .+..++|..+. |... .++. +..+.|+|+|+++++++|++ +
T Consensus 227 ~~prii~Vq~~g~~p~~~a~~~~~~~~~~~~~tia~~l~~~~-p~~~~~~~~~i~~~-g~~v~V~d~ei~~a~~~La~-~ 303 (338)
T PRK06450 227 EMPKIVAVQTEQVSPLCAKFKGISYTPPDKVTSIADALVSTR-PFLLDYMVKALSEY-GECIVVSDNEIVEAWKELAK-K 303 (338)
T ss_pred CCCeEEEEeeCCCCHHHHHhcCCCCCCCCCCCcceeeeecCC-CCCHHHHHHHHHhc-CcEEEECHHHHHHHHHHHHH-c
Confidence 4899999999987664 22111 12234443221 2111 1344 78999999999999999987 6
Q ss_pred CceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCc
Q 023695 219 GLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYL 259 (278)
Q Consensus 219 Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~ 259 (278)
|+++||+||+++|+++++ ++++||+++|++|.|.+
T Consensus 304 Gi~vepssaaalAa~~~l------~~~~vv~vltG~glK~~ 338 (338)
T PRK06450 304 GLLVEYSSATVYAAYKKY------SVNDSVLVLTGSGLKVL 338 (338)
T ss_pred CCEEChhHHHHHHHHHHC------CCCCEEEEeCCCCccCC
Confidence 999999999999999875 34689999989998854
No 55
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-46 Score=311.86 Aligned_cols=270 Identities=36% Similarity=0.563 Sum_probs=232.2
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCC-
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK- 79 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~- 79 (278)
.|||.|.+++..|+++|+|-||+ +|++.|+||+|+++|..|+.+|++|+|+||.+.+.+|.+.++.+||+|..|++..
T Consensus 79 ~KDRvAl~iir~Aee~GkL~~gg-~v~EGtaGsTgIslA~v~~a~Gyk~~I~mPddqs~eK~~ile~LGA~V~rV~pa~i 157 (391)
T KOG1481|consen 79 VKDRVALYIIRTAEEKGKLVRGG-TVVEGTAGSTGISLAHVARALGYKCHIYMPDDQSQEKSDILEFLGAEVHRVPPAPI 157 (391)
T ss_pred hhhhhHHHHHHHHHHcCCcccCc-eEEecCCCccchhHHHhhhhcCcceEEECCChHHHHHHHHHHHhcceeeecCCcCc
Confidence 49999999999999999999995 6999999999999999999999999999999999999999999999999998632
Q ss_pred -C---h-HHHHHHHHHHHHhCC--CccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhh
Q 023695 80 -G---M-KGAVQKAEEILAKTP--NAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEK 152 (278)
Q Consensus 80 -~---~-~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~ 152 (278)
+ | ..+.+.|.+...+.. ..+|.+||+|+.||..||.++|+|||.|..+.+|++++.+|||||++|+.+++|+.
T Consensus 158 ~dp~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~aHyetTGPEIw~QtkGniDaFia~~GTGGTiaGVskyLkek 237 (391)
T KOG1481|consen 158 VDPNHYVNQARRAANETPNASNGIRGWFADQFENVANWLAHYETTGPEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEK 237 (391)
T ss_pred cChhHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHHHHhcCcCcHHHHhhcCCcceEEeccCCCcchHHHHHHHhhc
Confidence 1 2 233344444433321 24678999999999999999999999999999999999999999999999999998
Q ss_pred CCC-cEEEEEecCCCCccc-------------CCC----CCCccccccCCCCCccccc--ccccCeEEEeCHHHHHHHHH
Q 023695 153 NPN-IKLYGIEPTESPVLS-------------GGK----PGPHKIQGIGAGFVPGVLE--VNIIDEVVQVSSDEAIETAK 212 (278)
Q Consensus 153 ~~~-~~vigV~~~~~~~~~-------------~~~----~~~~~~~gl~~~~~~~~~~--~~~~~~~~~v~d~e~~~a~~ 212 (278)
.+. ++++-.+|-++.... .|. +..+..+|+|...++.++. .+++|+.+.|+|++++++.+
T Consensus 238 ~~~~v~~~laDPpGSGlYnkV~~GVmy~~~e~eG~r~r~q~dti~EGIGinRiT~Nf~m~~~liD~a~rv~Deqai~Msr 317 (391)
T KOG1481|consen 238 SDGRVAVFLADPPGSGLYNKVNYGVMYDHIETEGTRRRNQVDTITEGIGINRITGNFQMAEDLIDDAMRVTDEQAINMSR 317 (391)
T ss_pred CCCceEEEEeCCCCCchhhhhhhhhhhhhhhhcCcccCCCcchhhhcccccccccccccchhhhhhheecChHHHHHHHH
Confidence 876 899999999994321 121 2345568888877766654 67799999999999999999
Q ss_pred HHHHhcCceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHHHhh
Q 023695 213 LLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKEAE 272 (278)
Q Consensus 213 ~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~ 272 (278)
.|..++|++++.||+.+..++.++++.. .++.++|+|+||+|.||++.++...+++.++
T Consensus 318 ~Ll~~dGLFvGsSsa~N~VaAv~vAk~L-gpG~~iVtilCDsG~rh~sk~~~~~~l~~~~ 376 (391)
T KOG1481|consen 318 YLLDNDGLFVGSSSALNCVAAVRVAKTL-GPGHTIVTILCDSGSRHLSKLFSESFLESKK 376 (391)
T ss_pred HhhhcCceEecchhhHHHHHHHHHHHhc-CCCceEEEEEeCCcchHHHHhcCHHHHhhcC
Confidence 9999999999999999999999999887 4899999999999999999977777766654
No 56
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=2.4e-46 Score=339.70 Aligned_cols=262 Identities=21% Similarity=0.252 Sum_probs=212.0
Q ss_pred CccHHHHHHHHHHHHc--CC--------------CCC--CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHH
Q 023695 1 MLQKIGYSMISDAEAK--GL--------------ITP--GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 62 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~--g~--------------l~~--g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~ 62 (278)
||+|++.+.+..+..+ +. +++ ++.+|+++|+||||+|+|++|+.+|++|+||||+++++.|+
T Consensus 76 FK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~ 155 (399)
T PRK08206 76 FKALGGAYAVARLLAEKLGLDISELSFEELTSGEVREKLGDITFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERV 155 (399)
T ss_pred hHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhhHHHHhccCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHH
Confidence 8999999998887632 21 000 11359999999999999999999999999999999999999
Q ss_pred HHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccC-----CCCC-CCchhhhhhchHHHHHhhhCC---CCCEEE
Q 023695 63 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQ-----QFEN-PANPKIHYETTGPELWKGSGG---RIDALV 133 (278)
Q Consensus 63 ~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~-~~~~~~g~~t~~~EI~~ql~~---~~d~iv 133 (278)
..|+.|||+|+.+++ +++++.+.+++++++. +++|++ ||+| |.+.++||.|+++||++|+++ .||+||
T Consensus 156 ~~i~~~GA~Vi~v~~--~~~~~~~~a~~~~~~~-g~~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vv 232 (399)
T PRK08206 156 DAIRALGAECIITDG--NYDDSVRLAAQEAQEN-GWVVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVF 232 (399)
T ss_pred HHHHHcCCEEEEeCC--CHHHHHHHHHHHHHHc-CCEEecCccccCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEE
Confidence 999999999999996 6888999999988875 778876 6765 566689999999999999965 599999
Q ss_pred EecCCCccHHHHHHHHHhhC--CCcEEEEEecCCCCccc----CCCCC------CccccccCCCC---CcccccccccCe
Q 023695 134 SGIGTGGTITGAGKFLKEKN--PNIKLYGIEPTESPVLS----GGKPG------PHKIQGIGAGF---VPGVLEVNIIDE 198 (278)
Q Consensus 134 ~~vG~Gg~~aGi~~~~k~~~--~~~~vigV~~~~~~~~~----~~~~~------~~~~~gl~~~~---~~~~~~~~~~~~ 198 (278)
+|+|+||+++|++++||+.+ +.++||+|||++++++. .+++. .+..+++..+. .++.+.++.+|+
T Consensus 233 vpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~gs~~l~~s~~~g~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~d~ 312 (399)
T PRK08206 233 LQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPDQADCLYQSAVDGKPVAVTGDMDTIMAGLACGEPNPLAWEILRNCADA 312 (399)
T ss_pred EcCCccHHHHHHHHHHHHHcCCCCCEEEEECCCCCchHHHHHHcCCcEEeCCCCCceeccCCCCCcCHHHHHHHHHhCCE
Confidence 99999999999999999884 47999999999998763 23321 23445664432 233445678999
Q ss_pred EEEeCHHHHHHHHHHHHH----hcCceeeccHHHHHHHHHHHHhc---------CC-CCCCeEEEEecCCCcCCcchhhc
Q 023695 199 VVQVSSDEAIETAKLLAL----KEGLFVGISSGGAAAAAIEIAKR---------PE-NAGKLIVVIFPSFGERYLSSVLF 264 (278)
Q Consensus 199 ~~~v~d~e~~~a~~~l~~----~~Gi~~~p~sg~a~aa~~~~~~~---------~~-~~~~~vv~i~~~gG~~~~~~~~~ 264 (278)
++.|+|+|++++++.|++ ++|+++||+||+++++++++.+. +. .++++||+|+ |+|+++.+ .|
T Consensus 313 ~v~VsD~ei~~a~r~La~~~~~~~gi~vepsgAa~lAa~~~~~~~~~~~~~~~~~~i~~~~~Vv~il-tgG~~d~~--~~ 389 (399)
T PRK08206 313 FISCPDEVAALGMRILANPLGGDPPIVSGESGAVGLGALAALMTDPDYQELREKLGLDEDSRVLLIS-TEGDTDPD--RY 389 (399)
T ss_pred EEEECHHHHHHHHHHHhcccCCCCCeeecchHHHHHHHHHHHHhcchhhHHHHhcCCCCCCEEEEEE-CCCCCCHH--HH
Confidence 999999999999999996 78999999999999999976532 22 3578899999 58997666 44
Q ss_pred HHHH
Q 023695 265 ESVR 268 (278)
Q Consensus 265 ~~~~ 268 (278)
.+++
T Consensus 390 ~~~~ 393 (399)
T PRK08206 390 REIV 393 (399)
T ss_pred HHHh
Confidence 4443
No 57
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=3.9e-45 Score=312.90 Aligned_cols=213 Identities=43% Similarity=0.623 Sum_probs=197.5
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++..+.++|.+ |+ .+|+++|+||||.|+|++|+++|++|++|+|.+.++.|+++++.+|++|+.+++ +
T Consensus 30 ~K~R~a~~~l~~a~~~g~~-~~-~~vv~~ssGN~g~alA~~a~~~g~~~~v~~p~~~~~~~~~~~~~~Ga~v~~~~~--~ 105 (244)
T cd00640 30 FKDRGALNLILLAEEEGKL-PK-GVIIESTGGNTGIALAAAAARLGLKCTIVMPEGASPEKVAQMRALGAEVVLVPG--D 105 (244)
T ss_pred cHHHHHHHHHHHHHHcCCC-CC-CEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--C
Confidence 7999999999999999976 44 579999999999999999999999999999999999999999999999999997 4
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCC-CCCEEEEecCCCccHHHHHHHHHhhCCCcEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG-RIDALVSGIGTGGTITGAGKFLKEKNPNIKLY 159 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~-~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vi 159 (278)
++++.+.+++++++.++++|+++|.|+.+ ..||.++++||.+|++. .||+||+|+|+||+++|++.+|+..+|.+|||
T Consensus 106 ~~~~~~~a~~~~~~~~~~~~~~~~~n~~~-~~g~~~~~~Ei~~q~~~~~~d~ivvp~GtGg~~~G~~~~~~~~~~~~~ii 184 (244)
T cd00640 106 FDDAIALAKELAEEDPGAYYVNQFDNPAN-IAGQGTIGLEILEQLGGQKPDAVVVPVGGGGNIAGIARALKELLPNVKVI 184 (244)
T ss_pred HHHHHHHHHHHHHhCCCCEecCCCCCHHH-HHHHHHHHHHHHHHcCCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEE
Confidence 78899999999988568999999999988 77889999999999965 59999999999999999999999999999999
Q ss_pred EEecCCCCcccCCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhc
Q 023695 160 GIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKR 239 (278)
Q Consensus 160 gV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~ 239 (278)
+|+| +++.|+|+|+++++++|++++|+++||++|++++++.+++++
T Consensus 185 ~v~~----------------------------------~~~~v~d~~~~~a~~~l~~~~gi~~~pssa~~~aa~~~~~~~ 230 (244)
T cd00640 185 GVEP----------------------------------EVVTVSDEEALEAIRLLAREEGILVEPSSAAALAAALKLAKK 230 (244)
T ss_pred EEee----------------------------------eEEEECHHHHHHHHHHHHHHcCceECHhHHHHHHHHHHHHHh
Confidence 9997 689999999999999999999999999999999999999877
Q ss_pred CCCCCCeEEEEecC
Q 023695 240 PENAGKLIVVIFPS 253 (278)
Q Consensus 240 ~~~~~~~vv~i~~~ 253 (278)
. .++++||+++|+
T Consensus 231 ~-~~~~~vv~v~tg 243 (244)
T cd00640 231 L-GKGKTVVVILTG 243 (244)
T ss_pred c-CCCCEEEEEeCC
Confidence 6 367788888844
No 58
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=1.9e-45 Score=338.71 Aligned_cols=247 Identities=20% Similarity=0.230 Sum_probs=209.1
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.+|++.|. ++|+++|+||||+|+|++|+++|++|+||||+++++.|+.+++.|||+|+.+++ +
T Consensus 95 fKdR~a~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa~~G~~~~i~vp~~~~~~k~~~~~~~GA~vi~v~~--~ 167 (442)
T PRK05638 95 FRDRLATVAVSYGLPYAA-----NGFIVASDGNAAASVAAYSARAGKEAFVVVPRKVDKGKLIQMIAFGAKIIRYGE--S 167 (442)
T ss_pred hHHHHHHHHHHHHHHcCC-----CEEEEeCCChHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHhcCcEEEEECC--C
Confidence 899999999999999876 789999999999999999999999999999999999999999999999999985 6
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCC------
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNP------ 154 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~------ 154 (278)
++++.+.+++++++. ++|++++++||.+ ++||+|+++||++|++ ||+||+|+|+||+++|++++|+++.+
T Consensus 168 ~~~~~~~a~~~~~~~-~~~~~~~~~np~~-~eG~~t~a~Ei~eq~~--pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~ 243 (442)
T PRK05638 168 VDEAIEYAEELARLN-GLYNVTPEYNIIG-LEGQKTIAFELWEEIN--PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEE 243 (442)
T ss_pred HHHHHHHHHHHHHhC-CeEecCCCCChhH-hhhHHHHHHHHHHHHC--cCEEEEeCCchHHHHHHHHHHHHHHhCCcccC
Confidence 889999999988775 7999999999998 7899999999999994 99999999999999999999999765
Q ss_pred CcEEEEEecCCCCccc----CCCC--CCccccccCCCC--Ccc---cccccccCeEEEeCHHHHHHHHHHHHHhcCceee
Q 023695 155 NIKLYGIEPTESPVLS----GGKP--GPHKIQGIGAGF--VPG---VLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVG 223 (278)
Q Consensus 155 ~~~vigV~~~~~~~~~----~~~~--~~~~~~gl~~~~--~~~---~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~ 223 (278)
.+|||+|||++++++. .+.. ..+...++..+. ... ...++..+..+.|+|+++.++++.+++ +||++|
T Consensus 244 ~prii~Vq~~~~~p~~~~~~~~~~~~~~t~a~gl~~~~p~~~~~~~~~i~~~~g~~~~v~d~~i~~a~~~l~~-eGi~~e 322 (442)
T PRK05638 244 IPKLIAVQTERCNPIASEILGNKTKCNETKALGLYVKNPVMKEYVSEAIKESGGTAVVVNEEEIMAGEKLLAK-EGIFAE 322 (442)
T ss_pred CCeEEEEecCCCCHHHHHHhcCCCCCCCceeeeEeeCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHh-cCceec
Confidence 4799999999887653 2211 122233442211 111 112344567899999999998888765 799999
Q ss_pred ccHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCcCCc
Q 023695 224 ISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYL 259 (278)
Q Consensus 224 p~sg~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~~~ 259 (278)
|+||+++|+++++.+++. .++++||+++|++|.|+.
T Consensus 323 pssaaa~Aa~~~~~~~g~i~~~~~Vv~i~tG~g~k~~ 359 (442)
T PRK05638 323 LSSAVVMPALLKLGEEGYIEKGDKVVLVVTGSGLKGY 359 (442)
T ss_pred chHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCCCC
Confidence 999999999999988864 467899999999999884
No 59
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=6.9e-45 Score=326.94 Aligned_cols=260 Identities=18% Similarity=0.217 Sum_probs=209.9
Q ss_pred CccHHHHHHHHHHHHc----------------CCCCC--CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHH
Q 023695 1 MLQKIGYSMISDAEAK----------------GLITP--GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 62 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~----------------g~l~~--g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~ 62 (278)
||+|++.+.+..+.++ +.+++ +.++|+++|+||||+|+|++|+.+|++|+||||+++++.|+
T Consensus 54 FK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~ 133 (376)
T TIGR01747 54 FKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIGEKMGQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERV 133 (376)
T ss_pred hHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHHhhcCCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHH
Confidence 8999999999987653 22221 23689999999999999999999999999999999999999
Q ss_pred HHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccC-----CCCC--CCchhhhhhchHHHHHhhhCC----CCCE
Q 023695 63 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQ-----QFEN--PANPKIHYETTGPELWKGSGG----RIDA 131 (278)
Q Consensus 63 ~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~--~~~~~~g~~t~~~EI~~ql~~----~~d~ 131 (278)
..|+.|||+|+.+++ +++++.+.+++++++. ++++++ +|+| |.. ++||+|+++||++|+++ .||+
T Consensus 134 ~~i~~~GAeVi~v~~--~~~~a~~~a~~~~~~~-g~~~~~~~~~~~~~~~~~~i-i~G~~Tia~Ei~eQl~~~~~~~pD~ 209 (376)
T TIGR01747 134 ENILNLGAECTITDM--NYDDTVRLAMQMAQQH-GWVVVQDTAWEGYEKIPTWI-MQGYATLADEAVEQLREMGSVTPTH 209 (376)
T ss_pred HHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CcEEeccccccccccCCchH-HHHHHHHHHHHHHHhhccCCCCCCE
Confidence 999999999999996 6888999999988875 678876 4655 433 78999999999999952 6999
Q ss_pred EEEecCCCccHHHHHHHHHhhCC--CcEEEEEecCCCCccc----C--CCCC------CccccccCCCC---Cccccccc
Q 023695 132 LVSGIGTGGTITGAGKFLKEKNP--NIKLYGIEPTESPVLS----G--GKPG------PHKIQGIGAGF---VPGVLEVN 194 (278)
Q Consensus 132 iv~~vG~Gg~~aGi~~~~k~~~~--~~~vigV~~~~~~~~~----~--~~~~------~~~~~gl~~~~---~~~~~~~~ 194 (278)
||+|+|+||+++|++.++++..+ .++||+|||++++++. . +++. .+.+++|..+. .++.+.++
T Consensus 210 vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~ga~~~~~s~~~~~g~~~~~~~~~~Tiadgl~~~~~~~~~~~~~~~ 289 (376)
T TIGR01747 210 VLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDKADCLYQSAVKKDGDIVNVGGDMATIMAGLACGEPNPISWEILRN 289 (376)
T ss_pred EEECCchhHHHHHHHHHHHHhcCCCCCEEEEEeeCCCCHHHHHHHhcCCCeEEcCCCccccccccccCCcchHHHHHHHh
Confidence 99999999999999999987643 3699999999998773 2 3321 24556776543 24455578
Q ss_pred ccCeEEEeCHHHHHHHHHHHHHhc----CceeeccHHHHHHHHHH---------HHhcCC-CCCCeEEEEecCCCcCCcc
Q 023695 195 IIDEVVQVSSDEAIETAKLLALKE----GLFVGISSGGAAAAAIE---------IAKRPE-NAGKLIVVIFPSFGERYLS 260 (278)
Q Consensus 195 ~~~~~~~v~d~e~~~a~~~l~~~~----Gi~~~p~sg~a~aa~~~---------~~~~~~-~~~~~vv~i~~~gG~~~~~ 260 (278)
..+.++.|+|+|+.++|+.|++.. ++++||+++++++++.. +.+++. .++++||+|+ |||+...+
T Consensus 290 ~~~~~v~V~D~ei~~A~~~L~~~~g~~~~i~~epaga~~la~l~~~~~~~~~~~~~~~~~~~~~~~vvvi~-t~gn~d~~ 368 (376)
T TIGR01747 290 CTSQFISAQDSVAAKGMRVLGAPYGGDPRIISGESGAVGLGLLAAVMYHPQYQSLMEKLQLDKDAVVLVIS-TEGDTDPD 368 (376)
T ss_pred cCCEEEEcCHHHHHHHHHHHhcccCCCCeEeeeCchHHHHHHHHHHHhCchHHHHHHHcCCCCCCEEEEEe-CCCCCCHH
Confidence 899999999999999999999855 59999999999988883 333333 3467888888 99995544
Q ss_pred hhhcHHH
Q 023695 261 SVLFESV 267 (278)
Q Consensus 261 ~~~~~~~ 267 (278)
.|.++
T Consensus 369 --~~~~~ 373 (376)
T TIGR01747 369 --HYREI 373 (376)
T ss_pred --HHHHH
Confidence 44443
No 60
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=1.2e-44 Score=322.57 Aligned_cols=250 Identities=22% Similarity=0.232 Sum_probs=207.1
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAK 79 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~-~~~~~~~~~~~~Ga~v~~~~~~~ 79 (278)
||||++.+++.++.++|. .+|+++|+||||+|+|++|+.+|++|+|+||++ +++.|+..++.+||+|+.+++
T Consensus 54 fKdR~a~~~l~~a~~~g~-----~~vv~aSsGN~g~a~A~~a~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~-- 126 (328)
T TIGR00260 54 FKDRGMAVALTKALELGN-----DTVLCASTGNTGAAAAAYAGKAGVKVVILYPAGKISLGKLAQALGYNAEVVAIDG-- 126 (328)
T ss_pred hHhhhHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHhcCcEEEEecC--
Confidence 899999999999999886 679999999999999999999999999999998 899999999999999999996
Q ss_pred ChHHHHHHHHHHHHhCCCccccCCCCC-CCchhhhhhchHHHHHhhhCC-CCCEEEEecCCCccHHHHHHHHHhhCC---
Q 023695 80 GMKGAVQKAEEILAKTPNAYMLQQFEN-PANPKIHYETTGPELWKGSGG-RIDALVSGIGTGGTITGAGKFLKEKNP--- 154 (278)
Q Consensus 80 ~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~g~~t~~~EI~~ql~~-~~d~iv~~vG~Gg~~aGi~~~~k~~~~--- 154 (278)
+++++.+.+++++++. +.++++++++ |.+ +.||.++++||++|+++ .||+||+|+|+||+++|++.+|++...
T Consensus 127 ~~~~~~~~~~~~~~~~-~~~~~~~~n~~~~~-~~g~~t~~~Ei~~q~~~~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~ 204 (328)
T TIGR00260 127 NFDDAQRLVKQLFGDK-EALGLNSVNSIPYR-LEGQKTYAFEAVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEKKEGGL 204 (328)
T ss_pred CHHHHHHHHHHHHhhc-CeeecccCCCCCeE-eeeehhHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHhcCC
Confidence 6888999999988775 4555554422 766 78999999999999964 799999999999999999999997510
Q ss_pred --CcEEEEEecCCCCccc-----CCCCC-----CccccccCCCCCccc------ccccccCeEEEeCHHHHHHHHHHHHH
Q 023695 155 --NIKLYGIEPTESPVLS-----GGKPG-----PHKIQGIGAGFVPGV------LEVNIIDEVVQVSSDEAIETAKLLAL 216 (278)
Q Consensus 155 --~~~vigV~~~~~~~~~-----~~~~~-----~~~~~gl~~~~~~~~------~~~~~~~~~~~v~d~e~~~a~~~l~~ 216 (278)
.+++++|||++++++. .++.. .+..++++.+ .|.. +.+.+.++.+.|+|+|+++++++|++
T Consensus 205 ~~~p~v~~Ve~~~~~~~~~~~~~~g~~~~~~~~~t~~~~l~~~-~p~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~ 283 (328)
T TIGR00260 205 DSLPVKRGIQAEGAADIVRAFLESGQWEPIEDPATLSTAIDIG-NPANWERALELFRRSNGNAEDVSDEEILEAIKLLAR 283 (328)
T ss_pred ccCCceeEEEcCCCChHHHHHHcCCCcCcCCCCCccCcceecC-CCCCHHHHHHHHHhcCCcEEecCHHHHHHHHHHHHH
Confidence 2499999999995442 23222 2233444332 1211 23467889999999999999999999
Q ss_pred hcCceeeccHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCcCCcc
Q 023695 217 KEGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLS 260 (278)
Q Consensus 217 ~~Gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~ 260 (278)
++|+++||++|+++++++++.+++. .+++++|+++|.+|.|+.+
T Consensus 284 ~~gi~~~pssa~alaa~~~~~~~~~~~~~~~vv~i~tG~~~k~~~ 328 (328)
T TIGR00260 284 EEGYFVEPHSAVSVAALLKLVEKGTADPAERVVCALTGNGLKDPE 328 (328)
T ss_pred hcCeeECchHHHHHHHHHHHHhCCCCCCCCcEEEEecCCCCCCCC
Confidence 9999999999999999999887654 3678899999888888753
No 61
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=1.8e-44 Score=324.61 Aligned_cols=254 Identities=24% Similarity=0.258 Sum_probs=198.0
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEE-eCCChHHHHHHHHHHHcCCeEEEEeCCCCC---HHHHHHHHHcCCEEEEeC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIE-PTSGNTGIGLAFMAAAKQYRLIITMPASMS---LERRIILRAFGAELVLTD 76 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~-assGN~g~a~A~~a~~~G~~~~vv~p~~~~---~~~~~~~~~~Ga~v~~~~ 76 (278)
||||.+...+..+.++|. +.+++ +|+||||+|+|++|+++|++|+||||+..+ +.|+.+++.+||+|+.++
T Consensus 65 ~K~R~a~~~~~~a~~~g~-----~~vv~~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~ 139 (365)
T cd06446 65 HKINNALGQALLAKRMGK-----KRVIAETGAGQHGVATATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVP 139 (365)
T ss_pred hhHHHHHHHHHHHHHcCC-----CeEEEecCchHHHHHHHHHHHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeC
Confidence 799999999999999887 34555 699999999999999999999999998643 367889999999999998
Q ss_pred CCC-ChHHHHHHHHHH-HHhCCC-ccccCCCC----CCCchhhhhhchHHHHHhhhC----CCCCEEEEecCCCccHHHH
Q 023695 77 PAK-GMKGAVQKAEEI-LAKTPN-AYMLQQFE----NPANPKIHYETTGPELWKGSG----GRIDALVSGIGTGGTITGA 145 (278)
Q Consensus 77 ~~~-~~~~~~~~a~~~-~~~~~~-~~~~~~~~----~~~~~~~g~~t~~~EI~~ql~----~~~d~iv~~vG~Gg~~aGi 145 (278)
... .++++...+.+. .++.++ +|+++++. ++.++++||+|+++||++|+. ..||+||+|+|+|||++|+
T Consensus 140 ~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi 219 (365)
T cd06446 140 SGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYPNMVRDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGL 219 (365)
T ss_pred CCCCcHHHHHHHHHHHHHhccCCceEecccccCCCCchHHHHHhhhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHH
Confidence 632 355665444333 443223 44444331 233558899999999999995 2699999999999999999
Q ss_pred HHHHHhhCCCcEEEEEecCCCCcccCC--------CCC--------------------CccccccCCC-CCcc--ccccc
Q 023695 146 GKFLKEKNPNIKLYGIEPTESPVLSGG--------KPG--------------------PHKIQGIGAG-FVPG--VLEVN 194 (278)
Q Consensus 146 ~~~~k~~~~~~~vigV~~~~~~~~~~~--------~~~--------------------~~~~~gl~~~-~~~~--~~~~~ 194 (278)
+++++. .++++||+|||++++.+... ... .+..++++.+ ..+. .+..+
T Consensus 220 ~~g~~~-~~~~~vigVep~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~ 298 (365)
T cd06446 220 FYPFIN-DKDVKLIGVEAGGCGLETGGHAAYLFGGTAGVLHGLKMYTLQDEDGQIVPPHSISAGLDYPGVGPEHAYLKDS 298 (365)
T ss_pred HHHHHh-CCCceEEEEcCCCCccccccceeeccCCCcceecchhhhccccccCCCCCcccccccccCCCCCHHHHHHHHh
Confidence 998877 46899999999998776421 110 0112234321 1111 13456
Q ss_pred ccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcch
Q 023695 195 IIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 261 (278)
Q Consensus 195 ~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 261 (278)
++|+++.|+|+|++++++.|++++||++||+||++++++++++++. .++++||+|+|++|+||+++
T Consensus 299 ~~d~~v~V~d~e~~~a~r~la~~eGi~~epssgaalAa~~~~~~~~-~~~~~Vv~i~~g~G~k~~~~ 364 (365)
T cd06446 299 GRVEYVAVTDEEALEAFKLLARTEGIIPALESSHAIAYAIKLAKKL-GKEKVIVVNLSGRGDKDLQT 364 (365)
T ss_pred CCceEEEeChHHHHHHHHHHHHhcCceeCccchHHHHHHHHHHHhc-CCCCeEEEEeCCCCcccccc
Confidence 7899999999999999999999999999999999999999998875 36789999998889999986
No 62
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=100.00 E-value=1.9e-44 Score=326.04 Aligned_cols=251 Identities=17% Similarity=0.077 Sum_probs=206.7
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.++|.++.++|. +.|+++|+||||+|+|++|+++|++|+||||++++..+...++.+|++|+.+++ +
T Consensus 100 FKdRga~~~i~~a~~~g~-----~~Vv~aSsGN~g~alA~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~g--~ 172 (398)
T TIGR03844 100 FKELEALPTMQRLKERGG-----KTLVVASAGNTGRAFAEVSAITGQPVILVVPKSSADRLWTTEPASSVLLVTVDG--D 172 (398)
T ss_pred cHHHHHHHHHHHHHHcCC-----CEEEEECCCHHHHHHHHHHHHcCCcEEEEECCChHHHHHHHhhCCcEEEEECCC--C
Confidence 899999999999999885 679999999999999999999999999999998654444445789999999986 6
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhC-------
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN------- 153 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~------- 153 (278)
++++.+.+++++++. +++..++++||.. ++|++|+++||++|++..||+||+|+|+|+++.|++.+++++.
T Consensus 173 ~d~a~~~a~~~a~~~-g~~~~~~~~~p~~-ieG~~Ti~~Ei~eql~~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~ 250 (398)
T TIGR03844 173 YTDAIALADRIATLP-GFVPEGGARNVAR-RDGMGTVMLDAAVTIGSLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGS 250 (398)
T ss_pred HHHHHHHHHHHHHhC-CccccCCCCCHHH-HhhHHHHHHHHHHHcCCCCCEEEEecCCCHHHHHHHHHHHHHHHcCCccC
Confidence 899999999998875 6654566678876 8999999999999996449999999999988999999888742
Q ss_pred CCcEEEEEecCCCCccc----CCCCC---------------CccccccCCCCCcc-------cccccccCeEEEeCHHHH
Q 023695 154 PNIKLYGIEPTESPVLS----GGKPG---------------PHKIQGIGAGFVPG-------VLEVNIIDEVVQVSSDEA 207 (278)
Q Consensus 154 ~~~~vigV~~~~~~~~~----~~~~~---------------~~~~~gl~~~~~~~-------~~~~~~~~~~~~v~d~e~ 207 (278)
..+++++||+++++++. .+... .+..+++..+..+. ...++..+.++.|+|+|+
T Consensus 251 ~~P~l~~VQ~eg~~p~~~a~~~g~~~~~~~~~~~~~~~~~~~t~a~~l~i~~p~~~~~~~~l~air~~~g~~v~Vsd~eI 330 (398)
T TIGR03844 251 KLPRLHLAQNLPFVPMVNAWQEGRREIIPESDMPDAENSIEEVYSDVLTNRTPPYGVTGGVFDALIATGGQMYGVSNKEA 330 (398)
T ss_pred CCCCEEEEEcCCchHHHHHHHcCCCccccccCCccccccccceecceeeeCCCCcchHHHHHHHHHHhCCEEEEECHHHH
Confidence 34789999999998763 33221 12234443222221 123577889999999999
Q ss_pred HHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCC-CCCeEEEEecCCCcCCcc
Q 023695 208 IETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN-AGKLIVVIFPSFGERYLS 260 (278)
Q Consensus 208 ~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~-~~~~vv~i~~~gG~~~~~ 260 (278)
.++++.|++++|+++||+||+++|+++++.+++.. ++++||+++|++|.|++.
T Consensus 331 ~~A~~~l~~~~gi~vEpa~A~alAal~k~~~~g~i~~~~~Vv~vlTG~glK~~~ 384 (398)
T TIGR03844 331 VSAGKLFEESEGIDILPAAAVAVAALVKAVESGFIGPDDDILLNITGGGYKRLR 384 (398)
T ss_pred HHHHHHHHhhCCccccccHHHHHHHHHHHHHhCCCCCCCeEEEEECCcchhhHH
Confidence 99999999999999999999999999999887654 788999999899988765
No 63
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=4.6e-44 Score=323.65 Aligned_cols=260 Identities=18% Similarity=0.202 Sum_probs=203.1
Q ss_pred CccHHHHHHHHHHHH--cCC--------------CC--CCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHH
Q 023695 1 MLQKIGYSMISDAEA--KGL--------------IT--PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 62 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~--~g~--------------l~--~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~ 62 (278)
||+|++.+.+..+.+ .|. .+ ....+||++|+||||+|+|++|+++|++|+||||+++++.|+
T Consensus 73 FK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~vv~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~ 152 (396)
T TIGR03528 73 FKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREKLGDITFVTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRL 152 (396)
T ss_pred hHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhhccCcEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHH
Confidence 899999999988633 221 00 011379999999999999999999999999999999999999
Q ss_pred HHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccC-----CCCCC-CchhhhhhchHHHHHhhhC----CCCCEE
Q 023695 63 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQ-----QFENP-ANPKIHYETTGPELWKGSG----GRIDAL 132 (278)
Q Consensus 63 ~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~-~~~~~g~~t~~~EI~~ql~----~~~d~i 132 (278)
..++.|||+|+.+++ +++++.+.+++++++. +++|++ +|+|. ...++||+|+++||++|++ +.||+|
T Consensus 153 ~~ir~~GAeVi~~~~--~~~~a~~~a~~~a~~~-g~~~v~~~~~~~~~~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~v 229 (396)
T TIGR03528 153 ENIRAEGAECTITDL--NYDDAVRLAWKMAQEN-GWVMVQDTAWEGYEKIPTWIMQGYGTLALEALEQLKEQGVEKPTHV 229 (396)
T ss_pred HHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CcEeeccccccccccCchHHHHHHhHHHHHHHHHHhhcCCCCCCEE
Confidence 999999999999985 6888999999998875 778875 57652 2236899999999999995 269999
Q ss_pred EEecCCCccHHHHHHHHHhh-CCC-cEEEEEecCCCCcccC------CCCC------CccccccCCCC---Ccccccccc
Q 023695 133 VSGIGTGGTITGAGKFLKEK-NPN-IKLYGIEPTESPVLSG------GKPG------PHKIQGIGAGF---VPGVLEVNI 195 (278)
Q Consensus 133 v~~vG~Gg~~aGi~~~~k~~-~~~-~~vigV~~~~~~~~~~------~~~~------~~~~~gl~~~~---~~~~~~~~~ 195 (278)
|+|+|+||+++|++.++++. .+. ++||+|||++++++.. +++. .+..++++.+. .++.+.+++
T Consensus 230 vvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~~a~~l~~s~~~~~g~~~~~~g~~~Tiadgl~~~~p~~~~~~~~~~~ 309 (396)
T TIGR03528 230 FLQAGVGSFAGAVQGYFASAYGEERPITVIVEPDAADCLYRSAIADDGKPHFVTGDMATIMAGLACGEPNTIGWEILRDY 309 (396)
T ss_pred EEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccCCCchHHHHHHhcCCCEEEeCCCccceecccccCCccHHHHHHHHHh
Confidence 99999999999999999554 444 5999999999987641 2221 23445665422 233444678
Q ss_pred cCeEEEeCHHHHHHHHHHHHH----hcCceeeccHHHHHHHHHH---------HHhcCC-CCCCeEEEEecCCCcCCcch
Q 023695 196 IDEVVQVSSDEAIETAKLLAL----KEGLFVGISSGGAAAAAIE---------IAKRPE-NAGKLIVVIFPSFGERYLSS 261 (278)
Q Consensus 196 ~~~~~~v~d~e~~~a~~~l~~----~~Gi~~~p~sg~a~aa~~~---------~~~~~~-~~~~~vv~i~~~gG~~~~~~ 261 (278)
+|+++.|+|+|+.++++.|++ ++++++||++++++|++.. +.+++. .++++||+|+ |||+...+
T Consensus 310 ~d~~v~VsD~ei~~a~r~La~~~~~~~~~~~epsga~~~Aalaa~~~~~~~~~~~~~~~~~~~~~vv~i~-tggn~d~~- 387 (396)
T TIGR03528 310 ASQFISCPDWVAAKGMRILGNPLKGDPRVISGESGAVGTGLLAAVMTNPDYKELREKLQLDKNSRVLLIS-TEGDTDPD- 387 (396)
T ss_pred CCeEEEECHHHHHHHHHHHhcccCCCCceeecCcHHHHHHHHHHHHhCchhHHHHHhcCCCCCCEEEEEE-CCCCCCHH-
Confidence 999999999999999999998 5799999999999955532 222222 2578888888 99995444
Q ss_pred hhcHH
Q 023695 262 VLFES 266 (278)
Q Consensus 262 ~~~~~ 266 (278)
.|.+
T Consensus 388 -~~~~ 391 (396)
T TIGR03528 388 -NYRK 391 (396)
T ss_pred -HHHH
Confidence 4444
No 64
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=1.4e-44 Score=319.11 Aligned_cols=248 Identities=21% Similarity=0.232 Sum_probs=197.3
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEe--CCChHHHHHHHHHHHcCCeEEEEeCCCCC--------HHHHHHHHHcCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEP--TSGNTGIGLAFMAAAKQYRLIITMPASMS--------LERRIILRAFGA 70 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~a--ssGN~g~a~A~~a~~~G~~~~vv~p~~~~--------~~~~~~~~~~Ga 70 (278)
+|||++.+++.+++++|. ++|+++ |+||||+|+|++|+.+|++|++|||++.+ ..|+.+++.+||
T Consensus 35 ~K~R~~~~~l~~a~~~g~-----~~vv~~ggs~GN~g~alA~~a~~~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga 109 (307)
T cd06449 35 NKIRKLEYLLPDALAKGA-----DTLVTVGGIQSNHTRQVAAVAAKLGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGA 109 (307)
T ss_pred hHHHHHHHHHHHHHHcCC-----CEEEECCCchhHHHHHHHHHHHHcCCeEEEEecCCCCcccccccccccHHHHHHCCC
Confidence 499999999999999987 678988 68999999999999999999999999876 468999999999
Q ss_pred EEEEeCCCCC--hHHHHHHH-HHHHHhCCCccc-cCCCC-CCCchhhhhhchHHHHHhhhCC---CCCEEEEecCCCccH
Q 023695 71 ELVLTDPAKG--MKGAVQKA-EEILAKTPNAYM-LQQFE-NPANPKIHYETTGPELWKGSGG---RIDALVSGIGTGGTI 142 (278)
Q Consensus 71 ~v~~~~~~~~--~~~~~~~a-~~~~~~~~~~~~-~~~~~-~~~~~~~g~~t~~~EI~~ql~~---~~d~iv~~vG~Gg~~ 142 (278)
+|+.++.... ...+.+.+ +++.++.+..|+ .+++. ||.+ ..||.++++||++|+++ .||+||+|+|||||+
T Consensus 110 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~ 188 (307)
T cd06449 110 DVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLG-GLGYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTH 188 (307)
T ss_pred EEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCCCCCccc-HHHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHH
Confidence 9999986321 12223333 333333323344 45553 8888 78999999999999954 699999999999999
Q ss_pred HHHHHHHHhhCCCcEEEEEecCCCCcccCCCCC---CccccccC--CCCCcccccccccCeEEEeCHHHHHHHHHHHHHh
Q 023695 143 TGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPG---PHKIQGIG--AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALK 217 (278)
Q Consensus 143 aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~---~~~~~gl~--~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~ 217 (278)
+|++++||+.++.++||+|+|.+++.+...... ...+.+++ .+..+..++.+++|+++.|+|+|+++++++|+++
T Consensus 189 ~G~~~~~~~~~~~~~ii~V~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~ 268 (307)
T cd06449 189 AGLSVGLAALGRQRRVIGIDASAKPEKTKAQVLRIAQAKLAEEGLEVKEEDVVLDDDYAAPEYGIPNDETIEAIKLCARL 268 (307)
T ss_pred HHHHHHHHhcCCCCeEEEEEecCchHHHHHHHHHHHHHHHHHcCCCCCcccEEEecCcccCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999998765321110 01122222 2233555667889999999999999999999999
Q ss_pred cCceeec-cHHHHHHHHHHHHhcCCC-CCCeEEEEecCCC
Q 023695 218 EGLFVGI-SSGGAAAAAIEIAKRPEN-AGKLIVVIFPSFG 255 (278)
Q Consensus 218 ~Gi~~~p-~sg~a~aa~~~~~~~~~~-~~~~vv~i~~~gG 255 (278)
+||++|| |+|++++++.++++++.. ++++||+|+ |||
T Consensus 269 ~Gi~~ep~ytg~~~aa~~~~~~~~~~~~~~~vv~i~-TGG 307 (307)
T cd06449 269 EGIITDPVYEGKSMQGMIDLVRNGEFKEGSKVLFIH-LGG 307 (307)
T ss_pred hCCccccchHHHHHHHHHHHHhcCCCCCCCeEEEEe-CCC
Confidence 9999999 899999999999887653 467888888 776
No 65
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=3.1e-43 Score=316.97 Aligned_cols=256 Identities=24% Similarity=0.241 Sum_probs=201.0
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH---HHHHHHHHcCCEEEEeCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL---ERRIILRAFGAELVLTDP 77 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~---~~~~~~~~~Ga~v~~~~~ 77 (278)
||+|.+...+..++++|+ .+.|+++|+||||+|+|++|+++|++|+||||+...+ .|+.+|+.+||+|+.++.
T Consensus 93 ~K~r~al~~~l~A~~~G~----~~vI~etgsGnhG~A~A~aaa~~Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~ 168 (402)
T PRK13028 93 HKINNCLGQALLAKRMGK----KRLIAETGAGQHGVATATAAALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTR 168 (402)
T ss_pred hHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHHHHHcCCCEEEEECCCcchhhHHHHHHHHHcCCEEEEEcC
Confidence 799999999999999986 2456678999999999999999999999999986433 578899999999999984
Q ss_pred -CCChHHHHHHHHH-HHHhCCCccccC-CCC----CCCchhhhhhchHHHHHhhhC----CCCCEEEEecCCCccHHHHH
Q 023695 78 -AKGMKGAVQKAEE-ILAKTPNAYMLQ-QFE----NPANPKIHYETTGPELWKGSG----GRIDALVSGIGTGGTITGAG 146 (278)
Q Consensus 78 -~~~~~~~~~~a~~-~~~~~~~~~~~~-~~~----~~~~~~~g~~t~~~EI~~ql~----~~~d~iv~~vG~Gg~~aGi~ 146 (278)
...++++.+.+.+ +.++.++.+|+. +.. .|.+...||++++.||.+|+. ..||+||+|+|+||+++|++
T Consensus 169 g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~~q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~ 248 (402)
T PRK13028 169 GGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRDFQSVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLF 248 (402)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHHHHHhHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHH
Confidence 3467888877744 555534555653 221 233445699999999999972 36999999999999999999
Q ss_pred HHHHhhCCCcEEEEEecCC--------CCcccCCCCC--------------------CccccccCCCCC-cc--cccccc
Q 023695 147 KFLKEKNPNIKLYGIEPTE--------SPVLSGGKPG--------------------PHKIQGIGAGFV-PG--VLEVNI 195 (278)
Q Consensus 147 ~~~k~~~~~~~vigV~~~~--------~~~~~~~~~~--------------------~~~~~gl~~~~~-~~--~~~~~~ 195 (278)
.+|++ .++++||||||.+ +.++..+.+. .+...+|..+.. |. .+....
T Consensus 249 ~~f~~-~~~v~iigVE~~G~~~~~~~~aa~l~~g~~g~~~g~~~~~l~~~~g~~~~~~sia~gl~~~~vgp~~~~l~~~~ 327 (402)
T PRK13028 249 SAFLD-DESVRLVGVEPAGRGLDLGEHAATLTLGKPGVIHGFKSYVLQDEDGEPAPVHSIAAGLDYPGVGPEHAYLKDIG 327 (402)
T ss_pred HHHHh-CCCceEEEEecCCCCcccccccccccCCCcceecccceeeccccCCCcCCccceeccccCCCCCHHHHHHHHhc
Confidence 99986 4889999999998 6666544431 111233332211 21 123455
Q ss_pred cCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchh
Q 023695 196 IDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSV 262 (278)
Q Consensus 196 ~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~ 262 (278)
.++.+.|+|+|++++++.|++.|||+++|+|+++++++++++++. .++++||+++|++|+||+++.
T Consensus 328 ~~~~v~VtD~eal~a~~~La~~eGIi~~~~sa~alA~a~~~a~~l-~~~~~VVv~lsG~G~kd~~~~ 393 (402)
T PRK13028 328 RVEYVTATDEEALDAFFLLSRTEGIIPALESSHAVAYAIKLAPEL-SKDETILVNLSGRGDKDIDYV 393 (402)
T ss_pred CcEEEEECHHHHHHHHHHHHHhcCCeeccHHHHHHHHHHHhhhhc-CCCCeEEEEECCCCccCHHHH
Confidence 678999999999999999999999999999999999999988763 367899999988899998854
No 66
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=3.6e-43 Score=319.14 Aligned_cols=258 Identities=22% Similarity=0.275 Sum_probs=198.2
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEE-eCCChHHHHHHHHHHHcCCeEEEEeCCCC---CHHHHHHHHHcCCEEEEeC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIE-PTSGNTGIGLAFMAAAKQYRLIITMPASM---SLERRIILRAFGAELVLTD 76 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~-assGN~g~a~A~~a~~~G~~~~vv~p~~~---~~~~~~~~~~~Ga~v~~~~ 76 (278)
||+|++.+++.++.++|. +.+++ +|+||||+|+|++|+++|++|+||||+.. ++.|+.+|+.|||+|+.++
T Consensus 100 ~K~R~A~~~~~~a~~~G~-----~~~vtetssGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~ 174 (419)
T TIGR01415 100 HKINTAIAQAYYAKIEGA-----KRLVTETGAGQWGSALSLAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSP 174 (419)
T ss_pred cHHHHHHHHHHHHHHcCC-----CeEEEecCchHHHHHHHHHHHHcCCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEEC
Confidence 799999999999999997 45665 68899999999999999999999999854 5688999999999999998
Q ss_pred CCCChHH------------------HHHHHHHHHHhCC-CccccCCCCCCCchhhhhhchHHHHHhhhCC---CCCEEEE
Q 023695 77 PAKGMKG------------------AVQKAEEILAKTP-NAYMLQQFENPANPKIHYETTGPELWKGSGG---RIDALVS 134 (278)
Q Consensus 77 ~~~~~~~------------------~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~---~~d~iv~ 134 (278)
.. +++ ++..+.+.+++.+ ..|+++++.|+ ...||.++|+||++|++. .||+||+
T Consensus 175 ~~--~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~~~~~y~~~~~~n~--~~~h~~~ig~Ei~~Ql~~~g~~pD~vv~ 250 (419)
T TIGR01415 175 SE--FTEFGREVLKEDPDHPGSLGIAISEAIEYALSDEDTKYSLGSVLNH--VLLHQTVIGLEAKKQMEEAGEDPDVIIG 250 (419)
T ss_pred Cc--hhhHHHHhhhcccccccchHHHHHHHHHHHHhCCCCEEEeCCCCcH--HHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 63 222 3456666666544 34556665553 367999999999999953 4999999
Q ss_pred ecCCCccHHHHHHHHHhh----CCCcEEEEEecCCCCcccCCCC----------CC-ccccccCCCCCcccc--------
Q 023695 135 GIGTGGTITGAGKFLKEK----NPNIKLYGIEPTESPVLSGGKP----------GP-HKIQGIGAGFVPGVL-------- 191 (278)
Q Consensus 135 ~vG~Gg~~aGi~~~~k~~----~~~~~vigV~~~~~~~~~~~~~----------~~-~~~~gl~~~~~~~~~-------- 191 (278)
|+|+||+++|++.+|+.. .+++|||+|||++++.+..+.. .+ ..+.+++.++.|..+
T Consensus 251 ~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep~~~~~l~~g~~~yd~~~~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~ 330 (419)
T TIGR01415 251 CVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEPKACPTLTRGEYRYDFGDTAGLTPLLKMYTLGHDFIPPPIHAGGLRYH 330 (419)
T ss_pred EeCchHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCChhhhcCcccccccccccCCcceeeeecCCCCCCcceeccccccC
Confidence 999999999999988432 2589999999999988765431 11 233456655544322
Q ss_pred ---------cccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCCCCC--eEEEEecCCCcCCcc
Q 023695 192 ---------EVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGK--LIVVIFPSFGERYLS 260 (278)
Q Consensus 192 ---------~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~--~vv~i~~~gG~~~~~ 260 (278)
..+.+.+.+.|+|+|++++++.|+++|||+++|+||++++++++++++....++ +||+++ +|+.|+|
T Consensus 331 ~~~~~~~~l~~~~~~~~~~V~d~e~~~a~r~la~~eGi~~epssa~alaaai~~a~~~~~~~~~~vvv~~l--sG~G~~d 408 (419)
T TIGR01415 331 GVAPTLSLLVNLGIVEARAYDQEEAFEAAVIFAKTEGIVPAPESAHAIAAAIDEARKCRETGEEKVILFNL--SGHGLLD 408 (419)
T ss_pred CccHHHHHHhhcCceEEEEECHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhcCcCCCCeEEEEEc--CCCCcCC
Confidence 123445789999999999999999999999999999999999999887654344 333444 4444466
Q ss_pred hhhcHHHHH
Q 023695 261 SVLFESVRK 269 (278)
Q Consensus 261 ~~~~~~~~~ 269 (278)
...|+++..
T Consensus 409 ~~~y~~~~~ 417 (419)
T TIGR01415 409 LKAYAKYLH 417 (419)
T ss_pred HHHHHHHhc
Confidence 667776653
No 67
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=4.4e-43 Score=318.93 Aligned_cols=260 Identities=22% Similarity=0.263 Sum_probs=200.1
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEE-eCCChHHHHHHHHHHHcCCeEEEEeCCC---CCHHHHHHHHHcCCEEEEeC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIE-PTSGNTGIGLAFMAAAKQYRLIITMPAS---MSLERRIILRAFGAELVLTD 76 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~-assGN~g~a~A~~a~~~G~~~~vv~p~~---~~~~~~~~~~~~Ga~v~~~~ 76 (278)
||+|++..++.++.++|. +.+++ +|+||||+|+|++|+++|++|+||||+. .++.|+.+|+.|||+|+.++
T Consensus 109 ~K~R~A~~~a~~a~~~G~-----~~~vtetgsGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~ 183 (427)
T PRK12391 109 HKPNTAVAQAYYNKKEGI-----KRLTTETGAGQWGSALALACALFGLECTVFMVRVSYEQKPYRRSLMETYGAEVIPSP 183 (427)
T ss_pred hHHHHHHHHHHHHHHCCC-----CEEEEccCchHHHHHHHHHHHHcCCcEEEEEecCCcccCHHHHHHHHHCCCEEEEEC
Confidence 799999999999999997 45665 5789999999999999999999999974 35678999999999999998
Q ss_pred CCCC----------------hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhC---CCCCEEEEecC
Q 023695 77 PAKG----------------MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSG---GRIDALVSGIG 137 (278)
Q Consensus 77 ~~~~----------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~---~~~d~iv~~vG 137 (278)
+..+ ...++..+.+.+.+.++.+|+..+.++ +...||.++|+||++|+. ..||+||+|+|
T Consensus 184 ~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y~~~s~~~-~~~~~~~~ig~Ei~~Ql~~~g~~pD~Vv~~vG 262 (427)
T PRK12391 184 SDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTKYALGSVLN-HVLLHQTVIGLEAKKQLELAGEYPDVVIGCVG 262 (427)
T ss_pred CchhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcEEEcCCCCc-HHHhhHHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence 5311 112466667776665454555444322 347899999999999995 36999999999
Q ss_pred CCccHHHHHHHHHh---hC-CCcEEEEEecCCCCcccCCCC----------CC-ccccccCCCCCccccc----------
Q 023695 138 TGGTITGAGKFLKE---KN-PNIKLYGIEPTESPVLSGGKP----------GP-HKIQGIGAGFVPGVLE---------- 192 (278)
Q Consensus 138 ~Gg~~aGi~~~~k~---~~-~~~~vigV~~~~~~~~~~~~~----------~~-~~~~gl~~~~~~~~~~---------- 192 (278)
+||+++|++.+|.. .+ +++|||+|||++++++..+.. .+ ..+.+++.++.|..+.
T Consensus 263 ~Gg~~aGi~~~f~~~~~~g~~~~riiaVEp~~~~~l~~g~~~~~~gd~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~g~~ 342 (427)
T PRK12391 263 GGSNFAGLAFPFLGDKLEGKKDTRFIAVEPAACPTLTKGEYAYDFGDTAGLTPLLKMYTLGHDFVPPPIHAGGLRYHGMA 342 (427)
T ss_pred chHHHHHHHHHHHHHHhcCCCCceEEEEeeccchhhccccccccccccccCCccceeEecCCCCCCccccccccccCCch
Confidence 99999999997732 34 889999999999988865321 11 2345666665544331
Q ss_pred -------ccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCC--CCCeEEEEecCCCcCCcchhh
Q 023695 193 -------VNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN--AGKLIVVIFPSFGERYLSSVL 263 (278)
Q Consensus 193 -------~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~--~~~~vv~i~~~gG~~~~~~~~ 263 (278)
...+.+.+.|+|+|++++++.|+++|||+++|+||++++++++++++... ++++||+++ .|+.|+|...
T Consensus 343 ~~~~~l~~~~~~~~~~V~d~e~~~a~~~~a~~eGi~~~pss~~alaaa~~~a~~~~~~~~~~~iv~~l--sG~G~~d~~~ 420 (427)
T PRK12391 343 PLVSLLVHEGLIEARAYPQTEVFEAAVLFARTEGIVPAPESSHAIAAAIDEALKAKEEGEEKVILFNL--SGHGLLDLAA 420 (427)
T ss_pred HHHHHHHhcCceEEEEECHHHHHHHHHHHHHHcCCeechHHHHHHHHHHHHHHhccccCCCCEEEEEe--CCCCCCCHHH
Confidence 23344789999999999999999999999999999999999998876532 345555555 4444567778
Q ss_pred cHHHH
Q 023695 264 FESVR 268 (278)
Q Consensus 264 ~~~~~ 268 (278)
|++++
T Consensus 421 y~~~l 425 (427)
T PRK12391 421 YDAYL 425 (427)
T ss_pred HHHHh
Confidence 88765
No 68
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=2.4e-44 Score=318.35 Aligned_cols=248 Identities=18% Similarity=0.128 Sum_probs=196.0
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEe--CCChHHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEeCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEP--TSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~a--ssGN~g~a~A~~a~~~G~~~~vv~p~~~-~~~~~~~~~~~Ga~v~~~~~ 77 (278)
||||++.+++.+++++|. ++||++ |+||||+|+|++|+++|+++++|||++. +..+..+++.|||+|+.+++
T Consensus 39 ~K~R~~~~~l~~a~~~g~-----~~vv~~g~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~Ga~v~~v~~ 113 (311)
T TIGR01275 39 NKIRKLEYLLADALSKGA-----DTVITVGAIQSNHARATALAAKKLGLDAVLVLREKEELNGNLLLDKLMGAETRVYSA 113 (311)
T ss_pred hhHHHHHHHHHHHHHcCC-----CEEEEcCCchhHHHHHHHHHHHHhCCceEEEecCCccCCCCHHHHHHcCCEEEEECc
Confidence 799999999999999987 679998 5699999999999999999999999875 45667778999999999985
Q ss_pred CCChHHHHHHHHHHHH----hCC-CccccCCCCCCCchhhhhhchHHHHHhhhCC--CCCEEEEecCCCccHHHHHHHHH
Q 023695 78 AKGMKGAVQKAEEILA----KTP-NAYMLQQFENPANPKIHYETTGPELWKGSGG--RIDALVSGIGTGGTITGAGKFLK 150 (278)
Q Consensus 78 ~~~~~~~~~~a~~~~~----~~~-~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~--~~d~iv~~vG~Gg~~aGi~~~~k 150 (278)
. ++.+..+.++++++ +.+ .+++++++.||.+ ..|+.++++||++|+++ .||+||+|+|||||++|++++||
T Consensus 114 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~g~~~~~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk 191 (311)
T TIGR01275 114 E-EYFEIMKYAEELAEELEKEGRKPYVIPVGGSNSLG-TLGYVEAVLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLS 191 (311)
T ss_pred h-hhhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHHH-HHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHH
Confidence 2 34444444444433 322 2345677788877 56777899999999953 69999999999999999999999
Q ss_pred hhCCCcEEEEEecCCCCcccCCC---CCCccccccCCC-CCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeec-c
Q 023695 151 EKNPNIKLYGIEPTESPVLSGGK---PGPHKIQGIGAG-FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGI-S 225 (278)
Q Consensus 151 ~~~~~~~vigV~~~~~~~~~~~~---~~~~~~~gl~~~-~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p-~ 225 (278)
+.+|+++||||+|+.+.+..... ..++..++++.+ .....+..++.+..+.|+|+|+++++++|++++|+++|| |
T Consensus 192 ~~~~~~~vigV~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~la~~~gi~vep~~ 271 (311)
T TIGR01275 192 ILNEDIRPVGVAVGRFGEDMTDKFVNLVKEIAEGLEVKASEVIPELDDYSGPGYGKPTSEVAEIVKKVASREGIILDPVY 271 (311)
T ss_pred HhCCCCcEEEEEecccHHHHHHHHHHHHHHHHHHhCCCCCCCEEEECCcccCcCCCCCHHHHHHHHHHHHHhCCccCcch
Confidence 99999999999987653211100 012234455543 223334467788899999999999999999999999999 6
Q ss_pred HHHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 023695 226 SGGAAAAAIEIAKRPENAGKLIVVIFPSFGE 256 (278)
Q Consensus 226 sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~ 256 (278)
+|++++++++++++...++++||+|+ |||+
T Consensus 272 sg~~~aa~~~~~~~~~~~~~~vv~i~-tGG~ 301 (311)
T TIGR01275 272 TGKAFYGLIDLIRKGELGEKGILFIH-TGGI 301 (311)
T ss_pred HHHHHHHHHHHHHhCCCCCCCEEEEE-CCCc
Confidence 99999999998877655677888888 8887
No 69
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=3.8e-43 Score=317.56 Aligned_cols=255 Identities=21% Similarity=0.250 Sum_probs=196.4
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-CCH--HHHHHHHHcCCEEEEeCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSL--ERRIILRAFGAELVLTDP 77 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~-~~~--~~~~~~~~~Ga~v~~~~~ 77 (278)
||||.+...+..++++|. + ..|+++|+||||+|+|++|+++|++|+||||+. .+. .|+.+|+.+||+|+.++.
T Consensus 81 ~K~R~a~~~~~~a~~~g~---~-~vi~e~ssGN~G~alA~~a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~ 156 (385)
T TIGR00263 81 HKINNALGQALLAKRMGK---K-RIIAETGAGQHGVATATAAALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTS 156 (385)
T ss_pred chHHHHHHHHHHHHHcCC---C-EEEEEcCcHHHHHHHHHHHHHcCCCEEEEecCCcccccchHHHHHHHcCCEEEEECC
Confidence 799999999999998885 1 445578999999999999999999999999985 343 578899999999999985
Q ss_pred C-CChHHHH-HHHHHHHHhCCCcccc-CCCCC----CCchhhhhhchHHHHHhhhC---C-CCCEEEEecCCCccHHHHH
Q 023695 78 A-KGMKGAV-QKAEEILAKTPNAYML-QQFEN----PANPKIHYETTGPELWKGSG---G-RIDALVSGIGTGGTITGAG 146 (278)
Q Consensus 78 ~-~~~~~~~-~~a~~~~~~~~~~~~~-~~~~~----~~~~~~g~~t~~~EI~~ql~---~-~~d~iv~~vG~Gg~~aGi~ 146 (278)
. ..++++. +.+++++++.++.+|+ +++.+ +.++..||+|+++||++|+. + .||+||+|+|+||+++|++
T Consensus 157 ~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~~~~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~ 236 (385)
T TIGR00263 157 GSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVRDFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIF 236 (385)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHHHHHhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHH
Confidence 3 3466664 4455556664455555 44432 23445899999999999983 2 5899999999999999999
Q ss_pred HHHHhhCCCcEEEEEecCCCC--------cccCCCCC--------------------CccccccCCCCC-c--ccccccc
Q 023695 147 KFLKEKNPNIKLYGIEPTESP--------VLSGGKPG--------------------PHKIQGIGAGFV-P--GVLEVNI 195 (278)
Q Consensus 147 ~~~k~~~~~~~vigV~~~~~~--------~~~~~~~~--------------------~~~~~gl~~~~~-~--~~~~~~~ 195 (278)
.++.. .|+++||+|||+++. .+..+.+. .+...+++.... | ..+....
T Consensus 237 ~~~~~-~~~~~iigVe~~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~tia~gl~~~~~~p~~~~~~~~~ 315 (385)
T TIGR00263 237 YAFID-DPSVQLIGVEAGGLGIDTDKHAATLAKGSPGVLHGMKTYLLQDEDGQILEAHSVSAGLDYPGVGPEHAYLHETG 315 (385)
T ss_pred HHHhh-CCCCeEEEEEeCCCcccchhhhhhhhcCCeeEecCcccccccCCCCcccccceeeccccCCCCCHHHHHHHhcC
Confidence 98854 699999999999863 23223221 011123322111 1 1223455
Q ss_pred cCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcch
Q 023695 196 IDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 261 (278)
Q Consensus 196 ~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 261 (278)
.|+.+.|+|+|+++++++|+++|||+++|+||++++++++++++. .++++||+++|++|++|+++
T Consensus 316 ~~~~v~Vsd~e~~~a~~~la~~egi~~~~ssaaalaa~~~~~~~l-~~~~~Vv~i~~g~G~~d~~~ 380 (385)
T TIGR00263 316 RATYEAITDDEALEAFKLLSRNEGIIPALESSHALAHLEKIAPTL-PKDQIVVVNLSGRGDKDIFT 380 (385)
T ss_pred CeEEEEECHHHHHHHHHHHHHhcCCeechHHHHHHHHHHHHHHhC-CCCCeEEEEeCCCCcCCHHH
Confidence 778999999999999999999999999999999999999987663 36789999998889999885
No 70
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=1.8e-42 Score=311.58 Aligned_cols=256 Identities=24% Similarity=0.293 Sum_probs=196.1
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-CC--HHHHHHHHHcCCEEEEeCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MS--LERRIILRAFGAELVLTDP 77 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~-~~--~~~~~~~~~~Ga~v~~~~~ 77 (278)
||+|.+...+..|++.|+ .+.|+++|+||||+|+|++|+++|++|+||||+. .+ ..|+.+|+.+||+|+.++.
T Consensus 89 ~K~r~al~~~l~A~~~Gk----~~vIaetgaGnhG~A~A~~aa~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~ 164 (397)
T PRK04346 89 HKINNVLGQALLAKRMGK----KRIIAETGAGQHGVATATAAALLGLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTS 164 (397)
T ss_pred hHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHHHHHcCCcEEEEecCCchhhhhhHHHHHHHCCCEEEEECC
Confidence 799999999999999997 2456668999999999999999999999999985 23 3578899999999999985
Q ss_pred -CCChHHHHHHHH-HHHHhCCCcccc-CCCCC----CCchhhhhhchHHHHHhhhC----CCCCEEEEecCCCccHHHHH
Q 023695 78 -AKGMKGAVQKAE-EILAKTPNAYML-QQFEN----PANPKIHYETTGPELWKGSG----GRIDALVSGIGTGGTITGAG 146 (278)
Q Consensus 78 -~~~~~~~~~~a~-~~~~~~~~~~~~-~~~~~----~~~~~~g~~t~~~EI~~ql~----~~~d~iv~~vG~Gg~~aGi~ 146 (278)
..++.++.+.+. .+.++.++.+|+ ++..+ |.+...||+++|.||.+|+. ..||+||+|+|+||+++|++
T Consensus 165 g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~~q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~ 244 (397)
T PRK04346 165 GSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIF 244 (397)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHHHhcchHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHH
Confidence 335666655554 456553444554 33322 23335699999999999983 36999999999999999999
Q ss_pred HHHHhhCCCcEEEEEecCCCC--------cccCCCCC-------------------Cc-cccccCCCCC-c--ccccccc
Q 023695 147 KFLKEKNPNIKLYGIEPTESP--------VLSGGKPG-------------------PH-KIQGIGAGFV-P--GVLEVNI 195 (278)
Q Consensus 147 ~~~k~~~~~~~vigV~~~~~~--------~~~~~~~~-------------------~~-~~~gl~~~~~-~--~~~~~~~ 195 (278)
.+|+. .++++||||||.++. ++..+++. .+ ...||..+.+ | ..+....
T Consensus 245 ~~f~~-~~~v~iigVE~~G~~~~~~~~~a~l~~g~~g~~~g~~~~~~~~~~g~~~~~~sis~gL~~pgvgp~~~~l~~~~ 323 (397)
T PRK04346 245 HPFID-DESVRLIGVEAAGKGLETGKHAATLTKGRPGVLHGAKTYLLQDEDGQILETHSISAGLDYPGVGPEHAYLKDIG 323 (397)
T ss_pred HHHhh-CCCCeEEEEecCCCccccccccchhhcCCeeeeccccceecccCCCccCCCceeeccccCCCCCHHHHHHHhcC
Confidence 99975 789999999999863 22223221 01 1123322111 1 1223455
Q ss_pred cCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchh
Q 023695 196 IDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSV 262 (278)
Q Consensus 196 ~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~ 262 (278)
.++.+.|+|+|++++++.|++.|||+++++|+.+++++++++++. .++++||++++++|+||++++
T Consensus 324 ~~~~v~VtD~eal~a~~~L~~~eGIi~~~esa~AlA~a~kla~~l-~~~~~Vvv~lsGrG~kd~~~~ 389 (397)
T PRK04346 324 RAEYVSITDDEALEAFQLLSRLEGIIPALESSHALAYALKLAPTL-GKDQIIVVNLSGRGDKDVFTV 389 (397)
T ss_pred CeEEEEECHHHHHHHHHHHHHHcCCEeccHHHHHHHHHHHhhhhc-CCCCeEEEEeCCCCccCHHHH
Confidence 678999999999999999999999999999999999999987653 367899999978899999853
No 71
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=2.2e-43 Score=314.34 Aligned_cols=250 Identities=22% Similarity=0.258 Sum_probs=199.6
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeC--CChHHHHHHHHHHHcCCeEEEEeCCCCCH--------HHHHHHHHcCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPT--SGNTGIGLAFMAAAKQYRLIITMPASMSL--------ERRIILRAFGA 70 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~as--sGN~g~a~A~~a~~~G~~~~vv~p~~~~~--------~~~~~~~~~Ga 70 (278)
||||++.+++.+++++|. ++||++| +||||+|+|++|+.+|++|++|||+..+. .|+..++.+||
T Consensus 47 ~K~R~~~~~l~~a~~~g~-----~~vvt~g~s~gN~g~alA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga 121 (331)
T PRK03910 47 NKTRKLEFLLADALAQGA-----DTLITAGAIQSNHARQTAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGA 121 (331)
T ss_pred hHHHHHHHHHHHHHHcCC-----CEEEEcCcchhHHHHHHHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCC
Confidence 799999999999999887 6788774 48999999999999999999999998775 45689999999
Q ss_pred EEEEeCCCCChHH-HHHHHHHHHHhCCCcc-ccCCCCCCCchhhhhhchHHHHHhhhCC---CCCEEEEecCCCccHHHH
Q 023695 71 ELVLTDPAKGMKG-AVQKAEEILAKTPNAY-MLQQFENPANPKIHYETTGPELWKGSGG---RIDALVSGIGTGGTITGA 145 (278)
Q Consensus 71 ~v~~~~~~~~~~~-~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~g~~t~~~EI~~ql~~---~~d~iv~~vG~Gg~~aGi 145 (278)
+|+.+++.++..+ +...++++.++.+..+ +..++.|+.+ ..||.++++||++|+++ .||+||+|+|||||++|+
T Consensus 122 ~vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~-~~g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi 200 (331)
T PRK03910 122 EIHVVPAGTDMDAQLEELAEELRAQGRRPYVIPVGGSNALG-ALGYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGL 200 (331)
T ss_pred EEEEeCccchHHHHHHHHHHHHHHcCCceEEECCCCCCchh-HHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHH
Confidence 9999987433323 3455666666543333 4566788887 67889999999999953 699999999999999999
Q ss_pred HHHHHhhCCCcEEEEEecCCCCcccCCCC---CCccccccCCC--CC--cccccccccCeEEEeCHHHHHHHHHHHHHhc
Q 023695 146 GKFLKEKNPNIKLYGIEPTESPVLSGGKP---GPHKIQGIGAG--FV--PGVLEVNIIDEVVQVSSDEAIETAKLLALKE 218 (278)
Q Consensus 146 ~~~~k~~~~~~~vigV~~~~~~~~~~~~~---~~~~~~gl~~~--~~--~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~ 218 (278)
+++||+.+|+++||+|||++++.+....+ .....++++.+ .. ...+.++++|+.+.|+|+|+++++++|++++
T Consensus 201 ~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~ 280 (331)
T PRK03910 201 AAGLAALGPDIPVIGVTVSRSAAEQEPKVAKLAQATAELLGLPTEIPRADIRLWDDYVGPGYGVPTDEMLEAVKLLARTE 280 (331)
T ss_pred HHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHcCCCccCCcccEEEEcCCCCCCCCCCCHHHHHHHHHHHHHc
Confidence 99999999999999999998865432111 01122334322 11 2235578899999999999999999999999
Q ss_pred Cceeec-cHHHHHHHHHHHHhcCCC-CCCeEEEEecCCCcC
Q 023695 219 GLFVGI-SSGGAAAAAIEIAKRPEN-AGKLIVVIFPSFGER 257 (278)
Q Consensus 219 Gi~~~p-~sg~a~aa~~~~~~~~~~-~~~~vv~i~~~gG~~ 257 (278)
||++|| |||+++++++++.+++.. ++++||+|+ |||+.
T Consensus 281 gi~~ep~ysg~~~aa~~~~~~~~~~~~~~~Vv~i~-tGG~~ 320 (331)
T PRK03910 281 GILLDPVYTGKAMAGLIDLIRQGRFKKGGNVLFIH-TGGAP 320 (331)
T ss_pred CCccccccHHHHHHHHHHHHHcCCCCCCCeEEEEE-CCChH
Confidence 999999 599999999998877654 567888887 99983
No 72
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=5.7e-43 Score=312.38 Aligned_cols=250 Identities=16% Similarity=0.195 Sum_probs=197.6
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEe--CCChHHHHHHHHHHHcCCeEEEEeCCCCC--------HHHHHHHHHcCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEP--TSGNTGIGLAFMAAAKQYRLIITMPASMS--------LERRIILRAFGA 70 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~a--ssGN~g~a~A~~a~~~G~~~~vv~p~~~~--------~~~~~~~~~~Ga 70 (278)
+|||++.+++.+++++|. .+|+++ |+||||+|+|++|+++|++|++|+|+.++ ..|+.+++.|||
T Consensus 50 ~K~R~~~~~l~~a~~~G~-----~~vvs~G~s~GN~g~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA 124 (337)
T PRK12390 50 NKTRKLEYLVPDALAQGA-----DTLVSIGGVQSNHTRQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGA 124 (337)
T ss_pred hhHHHHHHHHHHHHHcCC-----CEEEEeCCCccHHHHHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCC
Confidence 499999999999999998 678887 88999999999999999999999876544 237779999999
Q ss_pred EEEEeCCCC--ChHHHHHHHHHHHHhCCC-ccccCCCCCC-CchhhhhhchHHHHHhh---hCCCCCEEEEecCCCccHH
Q 023695 71 ELVLTDPAK--GMKGAVQKAEEILAKTPN-AYMLQQFENP-ANPKIHYETTGPELWKG---SGGRIDALVSGIGTGGTIT 143 (278)
Q Consensus 71 ~v~~~~~~~--~~~~~~~~a~~~~~~~~~-~~~~~~~~~~-~~~~~g~~t~~~EI~~q---l~~~~d~iv~~vG~Gg~~a 143 (278)
+|+.++... .+.++.+.+.+..++..+ .|.++++.++ .....||.++++||++| ++++||+||+|+|||||++
T Consensus 125 ~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtla 204 (337)
T PRK12390 125 DVRLVPDGFDIGIRKSWEDALEDVRAAGGKPYAIPAGASDHPLGGLGFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQA 204 (337)
T ss_pred EEEEeCCCcchhHHHHHHHHHHHHHhCCCceEEeCCcCCCCCcccHHHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHH
Confidence 999998631 233666666666665334 4446555433 22357899999999998 4447999999999999999
Q ss_pred HHHHHHHhhCCCcEEEEEecCCCCcccCCCC---CCccccccCCC--CCcc--cccccccCeEEEeCHHHHHHHHHHHHH
Q 023695 144 GAGKFLKEKNPNIKLYGIEPTESPVLSGGKP---GPHKIQGIGAG--FVPG--VLEVNIIDEVVQVSSDEAIETAKLLAL 216 (278)
Q Consensus 144 Gi~~~~k~~~~~~~vigV~~~~~~~~~~~~~---~~~~~~gl~~~--~~~~--~~~~~~~~~~~~v~d~e~~~a~~~l~~ 216 (278)
|++.+||+.+|++|||+|+|++++.+...+. ..+.+++++.+ ..+. .+..+++|+.|.|+|+|++++++++++
T Consensus 205 Gi~~~~k~~~~~~rvigV~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~vsd~e~~~a~~~la~ 284 (337)
T PRK12390 205 GMVVGFAADGRARRVIGIDASAKPEQTRAQVLRIARNTAELVELGRDITEDDVVLDERYAGPEYGLPNEGTLEAIRLCAR 284 (337)
T ss_pred HHHHHHHhcCCCceEEEEEecCchHHHHHHHHHHHHHHHHHhCCCCCCChhhEEEecccccCCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999876643211 12223444433 2222 355688999999999999999999999
Q ss_pred hcCceeec-cHHHHHHHHHHHHhcCCC-CCCeEEEEecCCCc
Q 023695 217 KEGLFVGI-SSGGAAAAAIEIAKRPEN-AGKLIVVIFPSFGE 256 (278)
Q Consensus 217 ~~Gi~~~p-~sg~a~aa~~~~~~~~~~-~~~~vv~i~~~gG~ 256 (278)
++||++|| |||+++++++++++++.. ++.+||++| |||.
T Consensus 285 ~~gi~~ep~ysg~~~aa~~~~~~~g~~~~~~~vv~~h-tgg~ 325 (337)
T PRK12390 285 LEGMLTDPVYEGKSMHGMIDLVRKGEFPEGSKVLYAH-LGGV 325 (337)
T ss_pred hcCccccccHHHHHHHHHHHHHhcCCCCCCCeEEEEe-CCCh
Confidence 99999999 599999999999988764 566777776 8886
No 73
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=7.1e-42 Score=323.89 Aligned_cols=257 Identities=21% Similarity=0.256 Sum_probs=201.0
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC---CCHHHHHHHHHcCCEEEEeCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS---MSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~---~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
||||.+.+++..++++|+. ++|+++|+||||+|+|++|+++|++|+||||+. .+..|+.+|+.|||+|+.++.
T Consensus 362 ~KdR~Al~~i~~A~~~G~~----~~IvetssGNhG~AlA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~~ 437 (695)
T PRK13802 362 HKINNALGQALLVKRMGKT----RVIAETGAGQHGVATATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTL 437 (695)
T ss_pred cHHHHHHHHHHHHHHcCCC----CEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcCCEEEEECC
Confidence 7999999999999999972 578899999999999999999999999999985 367899999999999999984
Q ss_pred C-CChHHHHHHH-HHHHHhCC-CccccCCCCCC----CchhhhhhchHHHHHhhhCC-----CCCEEEEecCCCccHHHH
Q 023695 78 A-KGMKGAVQKA-EEILAKTP-NAYMLQQFENP----ANPKIHYETTGPELWKGSGG-----RIDALVSGIGTGGTITGA 145 (278)
Q Consensus 78 ~-~~~~~~~~~a-~~~~~~~~-~~~~~~~~~~~----~~~~~g~~t~~~EI~~ql~~-----~~d~iv~~vG~Gg~~aGi 145 (278)
. .++.++.+.+ +++.++.+ .+|+++++.|+ .+..+||+++|.||++|+.. .||+||+|+|+||+++|+
T Consensus 438 g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~p~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi 517 (695)
T PRK13802 438 GDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFPAMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGV 517 (695)
T ss_pred CCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHH
Confidence 3 3567775544 55666543 45678888654 33468999999999999942 699999999999999999
Q ss_pred HHHHHhhCCCcEEEEEecCCCCcccC----------CCCC-----------C---------ccccccCCCCC-ccccccc
Q 023695 146 GKFLKEKNPNIKLYGIEPTESPVLSG----------GKPG-----------P---------HKIQGIGAGFV-PGVLEVN 194 (278)
Q Consensus 146 ~~~~k~~~~~~~vigV~~~~~~~~~~----------~~~~-----------~---------~~~~gl~~~~~-~~~~~~~ 194 (278)
+.+|+. .+.+|||||||.++....+ +.++ . ....||..+-+ |..-...
T Consensus 518 ~~~f~~-~~~vkligVE~~g~g~~~g~h~~~~~~g~g~~g~~~g~~~~~~~~~~g~~~~~~sis~gLdy~gvgp~~~~l~ 596 (695)
T PRK13802 518 MNAFLD-DERVNLYGYEAGGNGPESGKHAIRFAPGTGELGMFQGAKSYLLENDEGQTLDTYSISAGLDYASVGPEHAWLK 596 (695)
T ss_pred HHHHHh-CCCceEEEEEecCCCccccchhhhhhhccCCccccccceeecccCCCCCccCccccccccCCCCCCchhHHHH
Confidence 999976 6899999999999753321 1100 0 00011110000 1111122
Q ss_pred ccCeE--EEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCC---CCCeEEEEecCCCcCCcchh
Q 023695 195 IIDEV--VQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN---AGKLIVVIFPSFGERYLSSV 262 (278)
Q Consensus 195 ~~~~~--~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~---~~~~vv~i~~~gG~~~~~~~ 262 (278)
..+++ +.|+|+|++++++.|++.|||+++|+|++|++++++++++... .+++||+++++.|+||+++.
T Consensus 597 ~~~rv~~~~vtD~eal~a~~~La~~EGIipa~eS~hAva~a~~~a~~~~~~~~~~~~Vv~~lsg~GdKdl~~~ 669 (695)
T PRK13802 597 DIGRVNYSWATDEEAMNAFKDLCETEGIIPAIESSHAVAGAYKAAADLKAKGYEHPVMIVNISGRGDKDMNTA 669 (695)
T ss_pred hcCCeEEEEECHHHHHHHHHHHHHHcCccccchHHHHHHHHHHHHHhcccccCCCCEEEEEECCCCcCCHHHH
Confidence 34444 8999999999999999999999999999999999999886532 25689999999999999974
No 74
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=1.3e-42 Score=309.86 Aligned_cols=250 Identities=19% Similarity=0.209 Sum_probs=198.6
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEe--CCChHHHHHHHHHHHcCCeEEEEeCCCCC--------HHHHHHHHHcCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEP--TSGNTGIGLAFMAAAKQYRLIITMPASMS--------LERRIILRAFGA 70 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~a--ssGN~g~a~A~~a~~~G~~~~vv~p~~~~--------~~~~~~~~~~Ga 70 (278)
+|||++.+++.+++++|. ++|+++ |+||||+|+|++|+++|++|+||||+..+ ..|+.+++.|||
T Consensus 49 ~K~R~~~~~l~~a~~~G~-----~~vvs~ggs~gN~g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA 123 (337)
T TIGR01274 49 NKTRKLEYLIPDAQAQGC-----TTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGA 123 (337)
T ss_pred hHHHHHHHHHHHHHHcCC-----CEEEECCCCcchHHHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCC
Confidence 499999999999999998 678877 67999999999999999999999998643 579999999999
Q ss_pred EEEEeCCCC--ChHHHHHHHHHHHHhC-CCccccCCCCC--CCchhhhhhchHHHHHhhh---CCCCCEEEEecCCCccH
Q 023695 71 ELVLTDPAK--GMKGAVQKAEEILAKT-PNAYMLQQFEN--PANPKIHYETTGPELWKGS---GGRIDALVSGIGTGGTI 142 (278)
Q Consensus 71 ~v~~~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~~--~~~~~~g~~t~~~EI~~ql---~~~~d~iv~~vG~Gg~~ 142 (278)
+|+.++... ...+....+.+.+++. +..|+++.+.+ +.. ..|+.++++||++|+ +..||+||+|+|||||+
T Consensus 124 ~v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~i~~~~~~~~~~-~~G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~ 202 (337)
T TIGR01274 124 DVRLDPDGFDIGHRNSWERALEEVRGAGGKPYPIPAGCSDHPLG-GLGFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQ 202 (337)
T ss_pred EEEEeCCcccccchHHHHHHHHHHHhcCCceEEeCCCCCCCccc-hhHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhH
Confidence 999998531 1224555555554544 23366666533 444 578999999999995 34799999999999999
Q ss_pred HHHHHHHHhhCCCcEEEEEecCCCCcccCCCC---CCccccccCCCC--Cc--ccccccccCeEEEeCHHHHHHHHHHHH
Q 023695 143 TGAGKFLKEKNPNIKLYGIEPTESPVLSGGKP---GPHKIQGIGAGF--VP--GVLEVNIIDEVVQVSSDEAIETAKLLA 215 (278)
Q Consensus 143 aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~---~~~~~~gl~~~~--~~--~~~~~~~~~~~~~v~d~e~~~a~~~l~ 215 (278)
+|++++++..++++|||+|||++++.+..... ..+.+++++.+. .+ ..+...++++.|.|+|+|++++++.|+
T Consensus 203 aGl~~~~~~~~~~~~vigV~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la 282 (337)
T TIGR01274 203 AGMVAGFAADGRKDRVIGIDASATPEQTRAQILRIARNTAEKIGLERDITEDDVVLDTRFAYPEYGVPNEGTLEAIRLCA 282 (337)
T ss_pred HHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCCcCccceEEeccccCCCcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999976532111 122334444322 11 345677889999999999999999999
Q ss_pred HhcCceeec-cHHHHHHHHHHHHhcCCC-CCCeEEEEecCCCcC
Q 023695 216 LKEGLFVGI-SSGGAAAAAIEIAKRPEN-AGKLIVVIFPSFGER 257 (278)
Q Consensus 216 ~~~Gi~~~p-~sg~a~aa~~~~~~~~~~-~~~~vv~i~~~gG~~ 257 (278)
+++|+++|| |||+++++++++++++.. ++++||+|+ |||..
T Consensus 283 ~~eGi~~ep~ytg~~~aa~~~~~~~g~~~~~~~vv~~h-tGG~~ 325 (337)
T TIGR01274 283 KMEGVLTDPVYEGKSMHGMIEMIRRGEFKEGSNVLYAH-LGGAP 325 (337)
T ss_pred HhcCCccCcchHHHHHHHHHHHHhcCCCCCCCEEEEEe-CCChh
Confidence 999999999 699999999999988764 567877666 99974
No 75
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=6.5e-42 Score=308.45 Aligned_cols=256 Identities=21% Similarity=0.273 Sum_probs=197.3
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC---CHHHHHHHHHcCCEEEEeCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM---SLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~---~~~~~~~~~~~Ga~v~~~~~ 77 (278)
||+|.+...+..|+++|+ ++.|+++|+||||.|+|++|+++|++|+||||+.. ...|+.+|+.+||+|+.++.
T Consensus 102 ~K~R~a~~~~l~A~~~g~----~~vIaesgaGNhG~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~ 177 (410)
T PLN02618 102 HKINNAVAQALLAKRLGK----KRIIAETGAGQHGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHS 177 (410)
T ss_pred hHHHHHHHHHHHHHHcCC----CEEEEEcCcHHHHHHHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEEeC
Confidence 799999999999998886 13444556899999999999999999999999853 35678899999999999964
Q ss_pred -CCChHHHHH-HHHHHHHhCCCcccc-CCCC--C--CCchhhhhhchHHHHHhhh----CCCCCEEEEecCCCccHHHHH
Q 023695 78 -AKGMKGAVQ-KAEEILAKTPNAYML-QQFE--N--PANPKIHYETTGPELWKGS----GGRIDALVSGIGTGGTITGAG 146 (278)
Q Consensus 78 -~~~~~~~~~-~a~~~~~~~~~~~~~-~~~~--~--~~~~~~g~~t~~~EI~~ql----~~~~d~iv~~vG~Gg~~aGi~ 146 (278)
..+++++.. .+++++++.++.+|+ .+.. + +.....+++++|.||.+|+ +..||+||+|+|+||+++|++
T Consensus 178 g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp~P~~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~ 257 (410)
T PLN02618 178 GTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLF 257 (410)
T ss_pred CCCCHHHHHHHHHHHHHhccCCCEEEecCcCCCCCCHHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHH
Confidence 346777764 445677764455555 2221 2 2233579999999998776 346999999999999999999
Q ss_pred HHHHhhCCCcEEEEEecCCC--------CcccCCCCC-------------------Cc-cccccCCCCC-cc--cccccc
Q 023695 147 KFLKEKNPNIKLYGIEPTES--------PVLSGGKPG-------------------PH-KIQGIGAGFV-PG--VLEVNI 195 (278)
Q Consensus 147 ~~~k~~~~~~~vigV~~~~~--------~~~~~~~~~-------------------~~-~~~gl~~~~~-~~--~~~~~~ 195 (278)
.+|+. +++++||||||.++ .++..+++. .+ ...||..+.. |. .+....
T Consensus 258 ~~f~~-~~~v~ligVEa~G~~~~~~~~~a~l~~g~~gv~~g~~~~~l~~~~g~~~~~~sia~gl~~pgvgp~~~~l~~~~ 336 (410)
T PLN02618 258 HEFID-DEDVRLIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDTG 336 (410)
T ss_pred HHHHh-CCCceEEEEEeCCCcccccccccchhcCCcceeccccccccccccCCCCCCcchhhhhcCCCCcHHHHHHHhhc
Confidence 99975 68999999999997 233333321 01 1123322111 11 123346
Q ss_pred cCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchh
Q 023695 196 IDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSV 262 (278)
Q Consensus 196 ~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~ 262 (278)
.++.+.|+|+|+++++++|++.|||+++++|+++++++++++++. .++++||+++++.|+||+++.
T Consensus 337 ~~~~v~VtD~Eal~a~~~La~~eGIi~~~sSa~a~a~a~~~a~~l-~~~~~iVv~lsgrG~Kd~~~v 402 (410)
T PLN02618 337 RAEYYSVTDEEALEAFQRLSRLEGIIPALETSHALAYLEKLCPTL-PDGTKVVVNCSGRGDKDVNTA 402 (410)
T ss_pred CcEEEEECHHHHHHHHHHHHHHcCceEchhHHHHHHHHHHHhHhc-CCCCEEEEEeCCCCcCCHHHH
Confidence 789999999999999999999999999999999999999998764 367899999999999999864
No 76
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=100.00 E-value=1e-41 Score=300.99 Aligned_cols=242 Identities=36% Similarity=0.544 Sum_probs=195.7
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.+++++|. ++|+++|+||||.|+|++|+.+|++|++|+|+++++.|+++++.+|++|+.++. +
T Consensus 39 ~K~R~a~~~l~~a~~~~~-----~~vv~assGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~--~ 111 (306)
T PF00291_consen 39 FKDRGAYYLLSRAKEKGG-----RTVVGASSGNHGRALAYAAARLGLKCTIVVPEDVSPEKLKQMRALGAEVILVPG--D 111 (306)
T ss_dssp THHHHHHHHHHHHHHTTT-----SEEEEESSSHHHHHHHHHHHHHTCEEEEEEETTSHHHHHHHHHHTTCEEEEESS--T
T ss_pred cccccchhhhhhcccccc-----ceeeeeccCCceehhhhhhhhccccceeeeccccccccccceeeecceEEEccc--c
Confidence 899999999999999876 789999999999999999999999999999999999999999999999999986 3
Q ss_pred hHHHHHHHHHHHHhC-----CCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCE--EEEecCCCccHHHHHHHHHh--
Q 023695 81 MKGAVQKAEEILAKT-----PNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDA--LVSGIGTGGTITGAGKFLKE-- 151 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~--iv~~vG~Gg~~aGi~~~~k~-- 151 (278)
++++.+.+.+++++. +..+.++|+ ++.+...||.+++.||++|+. .||. ||+|+|+||+++|++.+++.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~Ei~~q~~-~~d~d~vvv~~GtGg~~~Gi~~~~~~~~ 189 (306)
T PF00291_consen 112 VEGAFDDAQELAKERAELLSPFNGELNQY-NNPNVIAGYATIGLEIYEQLG-KPDPDYVVVPVGTGGTAAGIAAGLKELI 189 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTEESTT-TSHHHHHHHHHHHHHHHHHHT-TESESEEEEEESSSHHHHHHHHHHHHHC
T ss_pred ccccccccccccccccccccccccccCcc-cchhhhhhhhhcchhcccccc-cccceEEEecCCchhHHHHHHhhhhhhh
Confidence 344444444333321 001126677 555558999999999999996 6766 99999999999999999999
Q ss_pred hCCCcEEEEEecCCCCccc----CCCCC----CccccccCCCC-Ccc----cccccccCeEEEeCHHHHHHHHHHHHHhc
Q 023695 152 KNPNIKLYGIEPTESPVLS----GGKPG----PHKIQGIGAGF-VPG----VLEVNIIDEVVQVSSDEAIETAKLLALKE 218 (278)
Q Consensus 152 ~~~~~~vigV~~~~~~~~~----~~~~~----~~~~~gl~~~~-~~~----~~~~~~~~~~~~v~d~e~~~a~~~l~~~~ 218 (278)
. |+++||+|+|.+++.+. .+.+. .+.+.+++.+. .+. .+.+++.++++.|+|+|+.+++++|++++
T Consensus 190 ~-~~~~vigv~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~ 268 (306)
T PF00291_consen 190 L-PPVRVIGVEPEGSDPLYRSFKAGKPIRLPGESTIAGLGVPMPFPGELDLELIDEYVGDVVGVSDEEALEAIRELAERE 268 (306)
T ss_dssp H-TTSEEEEEEETTGHHHHHHHHHTSCEHSSCHHSSTGGTSSSCTTTTHHHHHHHHETEEEEEEEHHHHHHHHHHHHHHH
T ss_pred c-ccccceeeeccCCccccccccccccccccceeeeecccCCccchhhhhhhhhhhccccccccchHHHHHHHHHHHHHc
Confidence 7 89999999999987663 23331 13456777654 222 23456777889999999999999999999
Q ss_pred CceeeccHHHHHHHHHHHHhcCCC---CCCeEEEEec
Q 023695 219 GLFVGISSGGAAAAAIEIAKRPEN---AGKLIVVIFP 252 (278)
Q Consensus 219 Gi~~~p~sg~a~aa~~~~~~~~~~---~~~~vv~i~~ 252 (278)
|+++||+++++++++++++++... ++++||+|+|
T Consensus 269 gi~~~p~~a~a~aa~~~~~~~~~~~~~~~~~vv~v~t 305 (306)
T PF00291_consen 269 GILVEPSSAAALAAALKLAERGSLAPPAGKRVVVVLT 305 (306)
T ss_dssp SB-B-HHHHHHHHHHHHHHHHTGCHTTTTSEEEEEE-
T ss_pred CcEEcHHHHHHHHHHHHHHHhCCccccCCCeEEEEcC
Confidence 999999999999999999887642 7889999984
No 77
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=5.8e-41 Score=298.27 Aligned_cols=246 Identities=20% Similarity=0.253 Sum_probs=188.0
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEE--EeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHH-HHHHHHHcCCEEEEeCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLI--EPTSGNTGIGLAFMAAAKQYRLIITMPASMSLE-RRIILRAFGAELVLTDP 77 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv--~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~-~~~~~~~~Ga~v~~~~~ 77 (278)
||+|++.+++.++.++|. ++|+ ++|+||||+|+|++|+++|++|++|||.+.+.. +...++.+||+++.++.
T Consensus 53 ~K~R~~~~~l~~a~~~G~-----~~vv~~~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~~Ga~v~~~~~ 127 (329)
T PRK14045 53 NKIRKLEYLLGDALSRGA-----DVVITVGAVHSNHAFVTGLAAKKLGLDAVLVLRGKEELKGNYLLDKIMGIETRVYEA 127 (329)
T ss_pred chHHHHHhHHHHHHHcCC-----CEEEEeCccHHHHHHHHHHHHHHcCCeEEEEEeCCCCCCcCHHHHHHCCCEEEEECC
Confidence 799999999999999988 5676 589999999999999999999999999875433 66678999999998874
Q ss_pred CCC---hHHHHHHHHHHHHhCCCccc-cCCCCCCCchhhhhhchHHHHHhhhC---CCCCEEEEecCCCccHHHHHHHHH
Q 023695 78 AKG---MKGAVQKAEEILAKTPNAYM-LQQFENPANPKIHYETTGPELWKGSG---GRIDALVSGIGTGGTITGAGKFLK 150 (278)
Q Consensus 78 ~~~---~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~g~~t~~~EI~~ql~---~~~d~iv~~vG~Gg~~aGi~~~~k 150 (278)
..+ .+.+.+.+++++++.+..|+ .+++.|+.+ ..|+.+...||++|+. ..+|+||+|+|||||++|+++++|
T Consensus 128 ~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~-~~g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk 206 (329)
T PRK14045 128 KDSFELMKYAEEVAEELKGEGRKPYIIPPGGASPVG-TLGYVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLA 206 (329)
T ss_pred CcccchHHHHHHHHHHHHhcCCCEEEECCCCCchhH-HHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHH
Confidence 222 33556666777666544555 456678877 4555555559999995 369999999999999999999999
Q ss_pred hhCCCcEEEEEecCCCCcccCCCC-----CCccccccCCCC-CcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeec
Q 023695 151 EKNPNIKLYGIEPTESPVLSGGKP-----GPHKIQGIGAGF-VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGI 224 (278)
Q Consensus 151 ~~~~~~~vigV~~~~~~~~~~~~~-----~~~~~~gl~~~~-~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p 224 (278)
..+|+++||+|+|.+......+.. ..+.+.+++.+. .+...+. ..|+...++ +|++++++.|+++|||++||
T Consensus 207 ~~~~~~kVigv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~-~~~~y~~~~-~e~~~~~~~la~~eGi~ldp 284 (329)
T PRK14045 207 ILNAEWRVVGIAVGSFGEKMKEKVKNLVKKTKELLGVKVKVQEPELYDY-SFGEYGKIT-KEVAKLIRSVGTMEGLILDP 284 (329)
T ss_pred HhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCCccceEeccc-ccCCCCCCC-HHHHHHHHHHHHhhCCCCcc
Confidence 999999999999976331111100 111234444333 2333333 346655566 79999999999999999999
Q ss_pred -cHHHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 023695 225 -SSGGAAAAAIEIAKRPENAGKLIVVIFPSFGE 256 (278)
Q Consensus 225 -~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~ 256 (278)
|||++++++++++++... +++||+|+ |||.
T Consensus 285 vytgk~~~a~~~~~~~~~~-~~~iv~ih-tGG~ 315 (329)
T PRK14045 285 VYTGKAFYGLMDLAKKGEL-GEKILFIH-TGGI 315 (329)
T ss_pred chHHHHHHHHHHHHHcCCC-CCCEEEEE-CCCc
Confidence 999999999999988643 67788887 8886
No 78
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=3.1e-39 Score=306.41 Aligned_cols=255 Identities=21% Similarity=0.245 Sum_probs=194.7
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC---CHHHHHHHHHcCCEEEEeCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM---SLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~---~~~~~~~~~~~Ga~v~~~~~ 77 (278)
||+|.+...+..|++.|+ .+.|+++|+||||+|+|++|+++|++|+||||+.. ...|+.+|+.+||+|+.++.
T Consensus 301 ~K~r~al~~~~~a~~~g~----~~vi~e~gsGnhG~A~A~~aa~~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~ 376 (610)
T PRK13803 301 HKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATACALFGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLS 376 (610)
T ss_pred HHHHHHHHHHHHHHHcCC----CEEEEecChHHHHHHHHHHHHHcCCcEEEEEeCCcccchhhHHHHHHHCCCEEEEECC
Confidence 799999999999998886 14455789999999999999999999999999764 35688999999999999985
Q ss_pred C-CChHHHHHHH-HHHHHhCCCccccCCCC---C--CCchhhhhhchHHHHHhhhC----CCCCEEEEecCCCccHHHHH
Q 023695 78 A-KGMKGAVQKA-EEILAKTPNAYMLQQFE---N--PANPKIHYETTGPELWKGSG----GRIDALVSGIGTGGTITGAG 146 (278)
Q Consensus 78 ~-~~~~~~~~~a-~~~~~~~~~~~~~~~~~---~--~~~~~~g~~t~~~EI~~ql~----~~~d~iv~~vG~Gg~~aGi~ 146 (278)
. .++.++.+.+ +++..+.++.+|++++. + |.+...||+++|.||++|+. ..||+||+|+|+||+++|++
T Consensus 377 ~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~~~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~ 456 (610)
T PRK13803 377 GSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQSVIGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIF 456 (610)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHHhhHHHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHH
Confidence 2 3466665444 44534445666664432 2 33333589999999999984 25999999999999999999
Q ss_pred HHHHhhCCCcEEEEEecCCCC--------cccCCCCC-------------------C-ccccccCCCCC-ccc--ccccc
Q 023695 147 KFLKEKNPNIKLYGIEPTESP--------VLSGGKPG-------------------P-HKIQGIGAGFV-PGV--LEVNI 195 (278)
Q Consensus 147 ~~~k~~~~~~~vigV~~~~~~--------~~~~~~~~-------------------~-~~~~gl~~~~~-~~~--~~~~~ 195 (278)
.+|+. +++++||||||.++. ++..+.++ . +...||..+.. |.. +....
T Consensus 457 ~~f~~-~~~v~iigVE~~g~~~~~~~~~a~l~~g~~g~~~g~~~~~~~~~~g~~~~~~sia~gl~~~gvg~~~~~~~~~~ 535 (610)
T PRK13803 457 YHFLD-DPSVKLIGVEAGGKGVNTGEHAATIKKGRKGVLHGSMTYLMQDENGQILEPHSISAGLDYPGIGPMHANLFETG 535 (610)
T ss_pred HHHhh-CCCceEEEEecCCCCcccccccchhhcCCeeeeccceeeeecccCCcccCCceeeccCCCCCCCHHHHHHHhcC
Confidence 99964 789999999999862 23333321 0 11223332211 111 12334
Q ss_pred cCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcch
Q 023695 196 IDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 261 (278)
Q Consensus 196 ~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 261 (278)
.++.+.|+|+|++++++.|++.|||+++++||++++++++++.+. .++++||+++|++|+||+++
T Consensus 536 ~~~~v~Vtd~ea~~a~~~La~~eGi~~~~ssa~alA~~~~~~~~~-~~~~~Vvv~lsG~G~kd~~~ 600 (610)
T PRK13803 536 RAIYTSVTDEEALDAFKLLAKLEGIIPALESSHALAYLKEGRKKF-KKKDIVIVNLSGRGDKDIPT 600 (610)
T ss_pred CeEEEEECHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHHhchhc-CCCCeEEEEeCCCCcCCHHH
Confidence 457899999999999999999999999999999999999986553 35789999998889999984
No 79
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.4e-37 Score=274.50 Aligned_cols=251 Identities=22% Similarity=0.254 Sum_probs=212.0
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAK 79 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~-~~~~~~~~~~~~Ga~v~~~~~~~ 79 (278)
||||++..++..+.+.|. .+|+++||||+|.|+|+++.+.|++|+|++|.+ ++..|+.+|..+|++++.+++
T Consensus 109 FKDrg~~~~~~~~~~~g~-----~~I~~ASSGnTgAs~aaya~rag~~v~Vl~P~g~vs~~k~~q~~~~ga~~i~v~G-- 181 (411)
T COG0498 109 FKDRGMTVLVSLAKELGA-----KTILCASSGNTGASAAAYAARAGLKVFVLYPKGKVSPGKLAQMLTLGAHVIAVDG-- 181 (411)
T ss_pred hhhhhHHHHHHHHHHhcC-----CEEEEeCCchHHHHHHHHhccCCCeEEEEecCCCCCHHHHHHHHhcCCEEEEEcC--
Confidence 899999999999999984 369999999999999999999999999999998 999999999999999999997
Q ss_pred ChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhC-CCCCEEEEecCCCccHHHHHHHHHhhCC----
Q 023695 80 GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSG-GRIDALVSGIGTGGTITGAGKFLKEKNP---- 154 (278)
Q Consensus 80 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~-~~~d~iv~~vG~Gg~~aGi~~~~k~~~~---- 154 (278)
+++++++.+++++++. ++++....-||.. ++|+.|+++||++|+. ..||+|++|+|+||++.|++.++++..+
T Consensus 182 ~fDda~~~vk~~~~~~-~~~~~~nsiNp~r-legq~t~~fe~~~ql~~~~p~~v~vPvGn~gni~a~~~g~~~~~~~g~i 259 (411)
T COG0498 182 NFDDAQELVKEAANRE-GLLSAVNSINPYR-LEGQKTYAFEIAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKI 259 (411)
T ss_pred cHHHHHHHHHHHHhhC-CceeeccccCHHH-hhhhhhhHhHHHHHhCCCCCCeEEEeCCchHHHHHHHHHHHhcccccch
Confidence 7899999999999865 5577777778887 8899999999999997 3699999999999999999999998764
Q ss_pred --CcEEEEEecCCCCcccCC-CC---C-CccccccCCCCCccccc------ccccCeEEEeCHHHHHHHHHHHHHhcCce
Q 023695 155 --NIKLYGIEPTESPVLSGG-KP---G-PHKIQGIGAGFVPGVLE------VNIIDEVVQVSSDEAIETAKLLALKEGLF 221 (278)
Q Consensus 155 --~~~vigV~~~~~~~~~~~-~~---~-~~~~~gl~~~~~~~~~~------~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~ 221 (278)
.+++.+|+++++.++... +. . .+....|..+ .|.++. .+..+..+.|||+|++++++.+++.+|++
T Consensus 260 ~~~p~~~~vqaeg~~p~~~~~~~~~~~~~T~a~am~I~-~p~n~~r~l~a~~es~g~~~~vsdeEi~~a~~~l~~~eG~~ 338 (411)
T COG0498 260 DKAPNMNGVQAEGFSPGVYAWKEGRETPETIAPAMDIG-NPSNWERALFALRESGGLAVAVSDEEILEAIKLLAEREGIL 338 (411)
T ss_pred hcCchhhhhhHhhccchhhhcccccccccccccccccC-CCCCHHHHHHHHHhcCCceEEeCHHHHHHHHHHHHHhCCcc
Confidence 468899999998766422 11 1 2223333322 233322 22235599999999999999999999999
Q ss_pred eeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcch
Q 023695 222 VGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 261 (278)
Q Consensus 222 ~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 261 (278)
+||+||++++++.++.++...++.++|+++|.+|.|+.++
T Consensus 339 ~eP~sA~ava~l~k~~~~~i~~~~~vV~v~Tg~~~K~~~~ 378 (411)
T COG0498 339 IEPHSAVAVAALLKLREKIIDPDETVVLVLTGHGLKFPDT 378 (411)
T ss_pred cCccHHHHHHHHHHHHHhhcCCCCeEEEEecCCcccChhH
Confidence 9999999999999998862246689999999999999886
No 80
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=99.98 E-value=1.4e-31 Score=225.60 Aligned_cols=250 Identities=20% Similarity=0.237 Sum_probs=196.1
Q ss_pred ccHHHHHHHHHHHHcCCCCCCCeEEEEeCC--ChHHHHHHHHHHHcCCeEEEEeCCCC----CHHHHHHHHHcCCEEEEe
Q 023695 2 LQKIGYSMISDAEAKGLITPGESVLIEPTS--GNTGIGLAFMAAAKQYRLIITMPASM----SLERRIILRAFGAELVLT 75 (278)
Q Consensus 2 K~R~a~~~l~~a~~~g~l~~g~~~vv~ass--GN~g~a~A~~a~~~G~~~~vv~p~~~----~~~~~~~~~~~Ga~v~~~ 75 (278)
|.|+++|++.+|+++|. +++|++.+ +||.+++|++|+++|++|++++.... -..++.+.+.+|+++..+
T Consensus 48 K~RKLefll~eal~~g~-----dTlvT~GgiQSNh~r~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~ 122 (323)
T COG2515 48 KIRKLEFLLGEALRKGA-----DTLVTYGGIQSNHVRQTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAV 122 (323)
T ss_pred HHHHHHHHHhhhhhcCC-----cEEEEecccchhHHHHHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEe
Confidence 89999999999999998 89999866 99999999999999999999997654 233677778899999999
Q ss_pred CCCCCh--H-HHHHHHHHHHHhCCCccccCCCC-CCCchhhhhhchHHHHHhhhC--CCCCEEEEecCCCccHHHHHHHH
Q 023695 76 DPAKGM--K-GAVQKAEEILAKTPNAYMLQQFE-NPANPKIHYETTGPELWKGSG--GRIDALVSGIGTGGTITGAGKFL 149 (278)
Q Consensus 76 ~~~~~~--~-~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~g~~t~~~EI~~ql~--~~~d~iv~~vG~Gg~~aGi~~~~ 149 (278)
+...+. + .....++++.++....|.++... ||.. ..||...+.||.+|.. -++|.||+++|||||.||+..++
T Consensus 123 ~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp~GG~~~~g-~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~ 201 (323)
T COG2515 123 DAGTDIGINASAEELAEEVRKQGGKPYVIPEGGSSPLG-ALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGL 201 (323)
T ss_pred cCCCChhhchhhHHHHHHHHhcCCCCcEeccCCcCccc-cccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHh
Confidence 975554 2 23334444444443344455544 5544 6799999999999986 57999999999999999999999
Q ss_pred HhhCCCcEEEEEecCCCCcccCCCC---CCccccccCCC-CCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeec-
Q 023695 150 KEKNPNIKLYGIEPTESPVLSGGKP---GPHKIQGIGAG-FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGI- 224 (278)
Q Consensus 150 k~~~~~~~vigV~~~~~~~~~~~~~---~~~~~~gl~~~-~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p- 224 (278)
...+++.+|||+....++.....+. ..+.++.++.. .....++.++....|+++.+|.+++++.+++.|||.+||
T Consensus 202 ~~~~~~~~ViG~~v~~~~~~~~~qv~~L~~~~a~~~~~~~~~~v~~~~dy~~~~Yg~p~~e~~e~i~~~~~~eGillDpV 281 (323)
T COG2515 202 AQLGPDVEVIGIDVSADPEKLKEQVLNLAQATAELLGLGSEADVLLSDDYHHPGYGKPNEEDIEAIKLLARLEGILLDPV 281 (323)
T ss_pred hhccCCCceEEEeecCCHHHHHHHHHHHHHHHHHHcCCCCCceEEEEecccCCccCCcCHHHHHHHHHHHHhhCcccccc
Confidence 9999999999999888764321111 12222333332 223456678888999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcC
Q 023695 225 SSGGAAAAAIEIAKRPENAGKLIVVIFPSFGER 257 (278)
Q Consensus 225 ~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~ 257 (278)
++++++.+++++++++.+++++-|+.+|+||..
T Consensus 282 YtgKam~Glid~~~k~~f~~~~~vLfiHtGG~~ 314 (323)
T COG2515 282 YTGKAMYGLIDLARKGEFPDGSPVLFIHTGGAP 314 (323)
T ss_pred cchHHHHHHHHHHhcccCCCCCceEEEEcCCcc
Confidence 999999999999999886666655555599874
No 81
>PRK09225 threonine synthase; Validated
Probab=99.97 E-value=9e-29 Score=226.69 Aligned_cols=246 Identities=15% Similarity=0.105 Sum_probs=187.6
Q ss_pred CccHHHHH---HHHHHHHcCCCCCCCeEEEEeCCChHHHHH-HHHHHHcCCeEEEEeCCC-CCHHHHHHHHHc-CCEE--
Q 023695 1 MLQKIGYS---MISDAEAKGLITPGESVLIEPTSGNTGIGL-AFMAAAKQYRLIITMPAS-MSLERRIILRAF-GAEL-- 72 (278)
Q Consensus 1 ~K~R~a~~---~l~~a~~~g~l~~g~~~vv~assGN~g~a~-A~~a~~~G~~~~vv~p~~-~~~~~~~~~~~~-Ga~v-- 72 (278)
||||++.. ++.++++ +. ..+|+++||||+|.|+ |.++.+.|++|+|++|++ ++..++.+|..+ |++|
T Consensus 111 FKD~a~~~l~~~l~~a~~-~~----~~~Il~ATSGdtG~Aa~aaf~~~~gi~~~V~~P~g~vs~~q~~Qm~t~~g~nv~v 185 (462)
T PRK09225 111 FKDFALQFLAQLLEYVLK-GE----KITILGATSGDTGSAAAEAFRGKPNVRVVILYPKGKVSPVQEKQMTTLQGDNIHV 185 (462)
T ss_pred hhhhHHHHHHHHHHHHHh-CC----CcEEEEcCCCcHHHHHHHHHhCcCCCEEEEEEcCCCCCHHHHHHHHhhcCCCeEE
Confidence 89999988 8888887 42 2679999999999999 788999999999999986 999999999999 9977
Q ss_pred EEeCCCCChHHHHHHHHHHHHhC-----CCccccCCCCCCCchhhhhhchHHHHHhhhCC---CCCEEEEecCCCccHHH
Q 023695 73 VLTDPAKGMKGAVQKAEEILAKT-----PNAYMLQQFENPANPKIHYETTGPELWKGSGG---RIDALVSGIGTGGTITG 144 (278)
Q Consensus 73 ~~~~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~---~~d~iv~~vG~Gg~~aG 144 (278)
+.+++ +++++.+.++++..+. -+++..+.. |+.. +.|+.+.++|+++|+.+ .||.|++|+|+||.+.|
T Consensus 186 i~V~G--~fDD~q~~vk~~~~d~~~~~~~~l~saNSi-N~~R-i~gQ~~yyfea~~ql~~~~~~p~~~vVPtGnfgni~a 261 (462)
T PRK09225 186 VAVEG--NFDDCQALVKAAFNDEELKEKLKLSSANSI-NIGR-LLAQIVYYFYAYLQLGIEAGEKVNFSVPSGNFGNILA 261 (462)
T ss_pred EEeCC--CHHHHHHHHHHHhhchhhhhcCceEEEecc-CHHH-HHHHHHHHHHHHHHhccccCCCCEEEEECCcHHHHHH
Confidence 56665 7899998888876541 134444543 6776 78999999999999953 38999999999999999
Q ss_pred HHHHHHhhCCCcEEEEEecCCCCccc----CCCCC-----CccccccCCCCCcccccc---------------------c
Q 023695 145 AGKFLKEKNPNIKLYGIEPTESPVLS----GGKPG-----PHKIQGIGAGFVPGVLEV---------------------N 194 (278)
Q Consensus 145 i~~~~k~~~~~~~vigV~~~~~~~~~----~~~~~-----~~~~~gl~~~~~~~~~~~---------------------~ 194 (278)
.+.+.+.-.|-.|+|+++ ..++.+. .|... .+...+|... .|.++.+ +
T Consensus 262 ~~~Ak~mGlpi~kli~A~-n~n~~l~~~~~~G~y~~~~~~~T~s~amdI~-~psn~eR~l~~~~~~~~~~v~~~m~~l~~ 339 (462)
T PRK09225 262 GYYAKKMGLPIKRLIVAT-NENDVLTRFLKTGVYDPRPTVATLSPAMDIS-VSSNFERLLFDLLGRDAAAVEELMEDLEE 339 (462)
T ss_pred HHHHHHcCCCcceEEEEe-cCChHHHHHHHcCCCccCCCCCCcCchhhcC-CCCcHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 999844434666999987 4444432 23221 1222333221 1222111 0
Q ss_pred ccC---------------eEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCc
Q 023695 195 IID---------------EVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYL 259 (278)
Q Consensus 195 ~~~---------------~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~ 259 (278)
.-. ..+.|+|+|+.++++.+++++|+++||+||++++++.++.+ ++.++|++.|.+|.|+.
T Consensus 340 ~gg~~~~~~~~~~~~~~f~a~~vsD~ei~~ai~~~~~~~G~~~dPhtAva~aa~~~~~~----~~~~~V~l~Ta~p~Kf~ 415 (462)
T PRK09225 340 KGEYDLSDEELAALREDFSAGSVSDEETLATIREVYEEYGYLIDPHTAVAYKAAREYLD----PGEPGVVLSTAHPAKFP 415 (462)
T ss_pred cCCcccCHHHHHHhhhcceEEEECHHHHHHHHHHHHHhCCEEECchHHHHHHHHHHhhC----CCCCEEEEecCCccCCH
Confidence 011 56899999999999999999999999999999999987632 45678999999999987
Q ss_pred ch
Q 023695 260 SS 261 (278)
Q Consensus 260 ~~ 261 (278)
+.
T Consensus 416 ~~ 417 (462)
T PRK09225 416 EV 417 (462)
T ss_pred HH
Confidence 64
No 82
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=99.96 E-value=5.5e-28 Score=221.63 Aligned_cols=247 Identities=14% Similarity=0.062 Sum_probs=187.5
Q ss_pred CccHHHHHH---HHHHHHc--CCCCCCCeEEEEeCCChHHHHH-HHHHHHcCCeEEEEeCCC-CCHHHHHHHHHcCC---
Q 023695 1 MLQKIGYSM---ISDAEAK--GLITPGESVLIEPTSGNTGIGL-AFMAAAKQYRLIITMPAS-MSLERRIILRAFGA--- 70 (278)
Q Consensus 1 ~K~R~a~~~---l~~a~~~--g~l~~g~~~vv~assGN~g~a~-A~~a~~~G~~~~vv~p~~-~~~~~~~~~~~~Ga--- 70 (278)
||||++..+ +.+++++ +. .+|+++||||+|.|+ +.++.+.|++|+|++|.+ +++.++.+|..+|+
T Consensus 110 FKD~a~~~l~~l~~~~~~~~~~~-----~~Il~ATSGdTG~Aa~aaf~~~~gi~v~Vl~P~g~vs~~Q~~Qm~t~g~~Nv 184 (460)
T cd01560 110 FKDMALQFLGRLLEYFLKRRNER-----ITILVATSGDTGSAAIEGFRGKPNVDVVVLYPKGGVSPIQELQMTTLPADNV 184 (460)
T ss_pred hHHhHHHHHHHHHHHHHHhcCCC-----eEEEEcCCCcHHHHHHHHHhCcCCCEEEEEEcCCCCCHHHHHHHHhhCCCce
Confidence 899999876 7777665 44 689999999999994 888999999999999986 99999999999996
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHhC-----CCccccCCCCCCCchhhhhhchHHHHHhhhCC----CCCEEEEecCCCcc
Q 023695 71 ELVLTDPAKGMKGAVQKAEEILAKT-----PNAYMLQQFENPANPKIHYETTGPELWKGSGG----RIDALVSGIGTGGT 141 (278)
Q Consensus 71 ~v~~~~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~----~~d~iv~~vG~Gg~ 141 (278)
+++.+++ +++++.+.++++.++. -+++-.+. -|+.. +.++.+.++|+++|+.+ .||.|++|+|+||.
T Consensus 185 ~vi~V~G--~fDd~q~~vk~~~~d~~~~~~~~l~saNS-iN~~R-i~~Q~~yyf~a~~ql~~~~~~~p~~~vVPtGnfgn 260 (460)
T cd01560 185 HVVAVEG--DFDDCQSLVKALFADEDFNKKLKLSSANS-INWAR-ILAQIVYYFYAYLQLLKRGEGEKVEFSVPTGNFGN 260 (460)
T ss_pred EEEEEcC--CHHHHHHHHHHHhcChhhHhcceEEEEec-cCHHH-HHHHHHHHHHHHHHhccccCCCCCEEEEECCcHHH
Confidence 8888886 7899998888876541 13344444 36666 78999999999999953 58999999999999
Q ss_pred HHHHHHHHHhhCCCcEEEEEecCCCCcc----cCCCCC------CccccccCCCCCcccccc------c-----------
Q 023695 142 ITGAGKFLKEKNPNIKLYGIEPTESPVL----SGGKPG------PHKIQGIGAGFVPGVLEV------N----------- 194 (278)
Q Consensus 142 ~aGi~~~~k~~~~~~~vigV~~~~~~~~----~~~~~~------~~~~~gl~~~~~~~~~~~------~----------- 194 (278)
+.|.+.+.+.-.|-.|+|+++.+.. .+ ..|... .+...+|... .|.++.+ .
T Consensus 261 i~a~~~Ak~mGlpi~kli~a~n~n~-il~~~~~~G~y~~~~~~~~T~spamdI~-~psn~eR~L~~l~~~~g~~~~~~m~ 338 (460)
T cd01560 261 ILAGYYAKKMGLPIKKLIVATNEND-VLRRFFKTGRYDRRESLKQTLSPAMDIL-KSSNFERLLFLLAGRDRTKVKMLME 338 (460)
T ss_pred HHHHHHHHHcCCCCccEEEEeCCCh-HHHHHHHcCCCcCCCCCCCCcCchhhcC-CCCCHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999765456678999654333 22 123221 1122222221 1222110 0
Q ss_pred -------------------ccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 023695 195 -------------------IIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFG 255 (278)
Q Consensus 195 -------------------~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG 255 (278)
..-..+.|+|+|+.++++.+++++|+++||.||++++++.++.++ ++.++|++.|.+|
T Consensus 339 ~~~~~g~~~~~~~~l~~~~~~f~a~~vsD~ei~~~i~~~~~~~G~~vdPhtAva~aa~~~~~~~---~~~~~V~l~Ta~p 415 (460)
T cd01560 339 EFEATGFLSLPKEELKKLREDFSSGSVSDEETLETIREVYEETGYLIDPHTAVGVRAAERVRKS---PGTPGVVLSTAHP 415 (460)
T ss_pred HHHhcCCEecCHHHHHhhhccceEEEECHHHHHHHHHHHHHhcCEEECchHHHHHHHHHHHHhc---cCCCEEEEecCCc
Confidence 001468999999999999999999999999999999999887654 3457899998999
Q ss_pred cCCcch
Q 023695 256 ERYLSS 261 (278)
Q Consensus 256 ~~~~~~ 261 (278)
.|+.+.
T Consensus 416 ~Kf~~~ 421 (460)
T cd01560 416 AKFPEA 421 (460)
T ss_pred ccCHHH
Confidence 998764
No 83
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.96 E-value=7.6e-27 Score=197.52 Aligned_cols=256 Identities=24% Similarity=0.304 Sum_probs=188.9
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC-CC--CHHHHHHHHHcCCEEEEeCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA-SM--SLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~-~~--~~~~~~~~~~~Ga~v~~~~~ 77 (278)
+|...+...+.-|++.|+ ++.|.+...|.||.|+|.+|+++|++|+|||-. ++ ...++.+|+.+||+|+.|..
T Consensus 86 HKiNN~lGQ~LLAkrMGK----~riIAETGAGQHGVAtAta~A~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~s 161 (396)
T COG0133 86 HKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATAAALFGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTS 161 (396)
T ss_pred hhHHHHHHHHHHHHHhCC----ceEEeecCCCcccHHHHHHHHHhCCceEEEecchhhhhcccchhhhhhcCceEEEecc
Confidence 477778888888999998 356777788999999999999999999999975 32 45678899999999999974
Q ss_pred -CCChHHHHHHH-HHHHHhCCCccccC-----CCCCCCchhhhhhchHHHHHhhh----CCCCCEEEEecCCCccHHHHH
Q 023695 78 -AKGMKGAVQKA-EEILAKTPNAYMLQ-----QFENPANPKIHYETTGPELWKGS----GGRIDALVSGIGTGGTITGAG 146 (278)
Q Consensus 78 -~~~~~~~~~~a-~~~~~~~~~~~~~~-----~~~~~~~~~~g~~t~~~EI~~ql----~~~~d~iv~~vG~Gg~~aGi~ 146 (278)
+....++.+.| +.|....++.+|+. |.--|......++.+|.|.-+|+ +.-||.||.|||+|++..|+.
T Consensus 162 Gs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdFQ~vIG~E~k~Qile~egrlPD~vvACVGGGSNAiG~F 241 (396)
T COG0133 162 GSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIF 241 (396)
T ss_pred CCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCcchhhhc
Confidence 34567777666 66666666667652 22223344567899999998886 345999999999999999998
Q ss_pred HHHHhhCCCcEEEEEecCCCC--------cccCCCCCC-------------------cc-ccccCCCCC-ccc--ccccc
Q 023695 147 KFLKEKNPNIKLYGIEPTESP--------VLSGGKPGP-------------------HK-IQGIGAGFV-PGV--LEVNI 195 (278)
Q Consensus 147 ~~~k~~~~~~~vigV~~~~~~--------~~~~~~~~~-------------------~~-~~gl~~~~~-~~~--~~~~~ 195 (278)
..|-. .+++++||||+.+-- ++..|+++- +. ..||..+-+ |.. +...-
T Consensus 242 ~~Fi~-d~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~GvlhG~~tyllQd~~GQi~e~hSISAGLDYPgVGPeha~l~~~g 320 (396)
T COG0133 242 HPFID-DESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHGMKTYLLQDEDGQILESHSISAGLDYPGVGPEHAYLKDIG 320 (396)
T ss_pred ccccC-CCCceEEEeccCcCccCCCccceeecCCCceeeecccceeeEcCCCCEeeeeeeccCCCCCCCChhHHHHHhcC
Confidence 88764 367999999998753 333333320 00 012211111 111 11112
Q ss_pred cCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchh
Q 023695 196 IDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSV 262 (278)
Q Consensus 196 ~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~ 262 (278)
--..+.++|+|++++.+.|.+.|||+.--.|+.|++-+++++.+.. +++.+|+-++..|+|++.+.
T Consensus 321 Ra~y~~itD~EAl~af~~L~r~EGIIPALESsHAlA~a~kla~~~~-~~~~ivvnlSGRGDKDv~tv 386 (396)
T COG0133 321 RAEYVSITDEEALEAFQLLSRLEGIIPALESSHALAYALKLAPKLP-KDEIIVVNLSGRGDKDVFTV 386 (396)
T ss_pred ceeEEecChHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHhchhcC-CCcEEEEEccCCCcccHHHH
Confidence 2357899999999999999999999999999999999999987764 45577777777789888753
No 84
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=99.95 E-value=1.5e-25 Score=190.18 Aligned_cols=264 Identities=22% Similarity=0.250 Sum_probs=198.6
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEe-CCChHHHHHHHHHHHcCCeEEEEeCCC---CCHHHHHHHHHcCCEEEEeC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEP-TSGNTGIGLAFMAAAKQYRLIITMPAS---MSLERRIILRAFGAELVLTD 76 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~a-ssGN~g~a~A~~a~~~G~~~~vv~p~~---~~~~~~~~~~~~Ga~v~~~~ 76 (278)
+|...|....-.++.+|. ..|+|= ..|.||.|++.+|+.+|++|+|||-.. ..+-++-+|+.|||+|+..+
T Consensus 110 HKiNTAlAqaYyak~eg~-----~rl~TETGAGQWGsAlslA~alf~lk~~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSP 184 (432)
T COG1350 110 HKINTALAQAYYAKKEGA-----KRLTTETGAGQWGSALSLAAALFGLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSP 184 (432)
T ss_pred CCcchHHHHHHHHHhcCc-----eeeecccCCchHHHHHHHHHHHhCceeEEEEEehhhhcchHHHHHHHHhCCeecCCC
Confidence 578888999999999998 445544 559999999999999999999999763 34567889999999999887
Q ss_pred CCCC----------------hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhh---CCCCCEEEEecC
Q 023695 77 PAKG----------------MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGS---GGRIDALVSGIG 137 (278)
Q Consensus 77 ~~~~----------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql---~~~~d~iv~~vG 137 (278)
.+.+ ..-++..|.+.+-++++..|....--+.. ..|+..+|+|..+|+ +..||.+|.|||
T Consensus 185 S~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~~~kY~lGSVlnhv-llhQTViGlEakkQle~~~e~PDv~igcvG 263 (432)
T COG1350 185 SELTEFGRKILKEDPDHPGSLGIAISEAIEYALKNENTKYSLGSVLNHV-LLHQTVIGLEAKKQLEQAGEDPDVIIGCVG 263 (432)
T ss_pred cchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCCCceecchhHHHHH-HHHHHHHhHHHHHHHHhcCCCCCEEEEecc
Confidence 5321 11255666666666554445433322223 679999999996665 557999999999
Q ss_pred CCccHHHHHHHHHh---hC-CCcEEEEEecCCCCcccCCCCCCc-----------cccccCCCCCccccc----------
Q 023695 138 TGGTITGAGKFLKE---KN-PNIKLYGIEPTESPVLSGGKPGPH-----------KIQGIGAGFVPGVLE---------- 192 (278)
Q Consensus 138 ~Gg~~aGi~~~~k~---~~-~~~~vigV~~~~~~~~~~~~~~~~-----------~~~gl~~~~~~~~~~---------- 192 (278)
+|++++|+..-|-. .+ ..+++|+|+|..++.+..|...-+ .+-.||.++.|+.+.
T Consensus 264 GGSNfag~~yPfi~d~l~g~~~~~fiAvep~a~P~lT~GeY~YD~gDtagltPllKMyTlGhd~vpPpihAgGLRYHG~a 343 (432)
T COG1350 264 GGSNFAGLTYPFIGDKLRGKKETRFIAVEPKACPKLTKGEYRYDFGDTAGLTPLLKMYTLGHDYVPPPIHAGGLRYHGVA 343 (432)
T ss_pred CCCccccccchhhhhhhcCCceeEEEEeCCccCCccccceeeccCCchhccchhhhhhccCCCccCCCcccccccccCcC
Confidence 99999999887732 12 238999999999999886654211 133456555555432
Q ss_pred -------ccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcH
Q 023695 193 -------VNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFE 265 (278)
Q Consensus 193 -------~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~ 265 (278)
...+-+....+.+|++++.+.|++.|||...|.|+.|+.++++.+.+.+..++..|++++-+|.-.+|-.-|+
T Consensus 344 Ptls~L~~~Giv~a~ay~Q~Evfeaa~lFa~~EGiVPAPEsaHAi~~aid~A~~a~~~geekvI~fnlSGHGllDL~~Y~ 423 (432)
T COG1350 344 PTLSLLVKEGIVEARAYDQEEVFEAAVLFARTEGIVPAPESAHAIKAAIDEALKAREEGEEKVILFNLSGHGLLDLSAYD 423 (432)
T ss_pred hHHHHHHHcCcccceecChHHHHHHHHHHHHhcCCccCCcchhhHHHHHHHHHhccccCceeEEEEeccCccccchhhHH
Confidence 2333357889999999999999999999999999999999999988877666666666656777778877888
Q ss_pred HHHHH
Q 023695 266 SVRKE 270 (278)
Q Consensus 266 ~~~~~ 270 (278)
++++.
T Consensus 424 ~yl~g 428 (432)
T COG1350 424 KYLEG 428 (432)
T ss_pred HHhhh
Confidence 87654
No 85
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.92 E-value=5.7e-24 Score=179.02 Aligned_cols=253 Identities=19% Similarity=0.231 Sum_probs=204.2
Q ss_pred CccHHHHHHHHH-----HHHcCCCCCCCe----------------EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH
Q 023695 1 MLQKIGYSMISD-----AEAKGLITPGES----------------VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL 59 (278)
Q Consensus 1 ~K~R~a~~~l~~-----a~~~g~l~~g~~----------------~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~ 59 (278)
+|.|+-.|-+.. |++.|.|+-..+ .|...|+||.|.++...++.+|++++|.|+.++.+
T Consensus 117 IKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~~f~~FFs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADAr~ 196 (443)
T COG3048 117 IKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSEEFKDFFSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARA 196 (443)
T ss_pred eeccccHHHHHHHHHHHHHhcCcccccchHHHhhcHHHHHHHHhheEeecccCccceehhhhhhhhcceEEEEecchHHH
Confidence 588988887753 567787755433 68889999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhC--------CCCCE
Q 023695 60 ERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSG--------GRIDA 131 (278)
Q Consensus 60 ~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~--------~~~d~ 131 (278)
+|++++|+.|.+|+.... +|..+.+.-++.+++.|..||++..++... ..||...+..+-.|+. ..|-.
T Consensus 197 WKKd~LRs~gV~ViEYe~--DY~~AVeeGRk~a~~DP~c~FiDDE~S~~L-FLGYaVAa~Rlk~Q~d~~gi~vd~ehPLf 273 (443)
T COG3048 197 WKKDKLRSHGVTVVEYEQ--DYGVAVEEGRKEAESDPNCFFIDDENSRTL-FLGYAVAAQRLKKQFDEQGIVVDAEHPLF 273 (443)
T ss_pred HHHHHHHhcCceEEEecc--hhhHHHHHhhhhhccCCceEEecccchhhh-hhhHHHHHHHHHHHHHhcCceecCCCceE
Confidence 999999999999999985 788999999999999899999987655544 6799999999999983 24778
Q ss_pred EEEecCCCccHHHHHHHHHhh-CCCcEEEEEecCCCCcccCCC---------------CCCccccccCCCCCcccc---c
Q 023695 132 LVSGIGTGGTITGAGKFLKEK-NPNIKLYGIEPTESPVLSGGK---------------PGPHKIQGIGAGFVPGVL---E 192 (278)
Q Consensus 132 iv~~vG~Gg~~aGi~~~~k~~-~~~~~vigV~~~~~~~~~~~~---------------~~~~~~~gl~~~~~~~~~---~ 192 (278)
|..|||.||...|++.++|.. +.++.++-+||..+|++.-|. .+.+..+||+.+..+..+ .
T Consensus 274 VylPCGVGGgPGGVafGLKl~fgd~VhcfFaEPthsPcMlLGv~tGlHe~ISVqdiGidn~TaADGLAVgRpSgfVgr~m 353 (443)
T COG3048 274 VYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVYTGLHEQISVQDIGIDNLTAADGLAVGRPSGFVGRAM 353 (443)
T ss_pred EEeecCCCCCcchhhhhhHhhhcCceEEEEecCCCChHHHHhhhhccccceeeEeecccccccccceeecCccchHHHHH
Confidence 999999999999999999976 478999999999999875221 123345677766543332 2
Q ss_pred ccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcC------------CCCCCeEEEEecCCCc
Q 023695 193 VNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP------------ENAGKLIVVIFPSFGE 256 (278)
Q Consensus 193 ~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~------------~~~~~~vv~i~~~gG~ 256 (278)
...+|..|+|+|+..++....|++.||+.+|||+-+++.+..++.+.. ...+.+-+++.++||-
T Consensus 354 e~lL~G~~TvdD~~ly~lL~~L~~~e~~rlEPSalAgm~Gp~~~~~~~~g~~~~~~~~~~~~~natHlvWaTGG~M 429 (443)
T COG3048 354 ERLLDGYYTVDDQTLYDLLGWLAQEEGIRLEPSALAGMAGPQRVCASVEGYRYRHGFSAEQLNNATHLVWATGGGM 429 (443)
T ss_pred HHHhCCcEEechHHHHHHHHHHHHhcCcccCchhhhcccCcceeeechhHHHHHhhchhhhhcCeeEEEEecCCCc
Confidence 567899999999999999999999999999999878777776553211 1245567888844544
No 86
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.90 E-value=4e-22 Score=170.76 Aligned_cols=254 Identities=20% Similarity=0.226 Sum_probs=175.3
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC---CCHHHHHHHHHcCCEEEEeCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS---MSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~---~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
+|...+...+..+.+.|+ ++.|.+...|.||.|+|.+|+++|++|+|+|-.. ...-++.+||.+||+|+.+..
T Consensus 154 HKiNnav~QallakrlGk----knviaETGAGQhGvatA~a~a~FGl~C~v~mgAed~~rqalnvfrmrllGAkV~pv~s 229 (477)
T KOG1395|consen 154 HKINNAVAQALLAKRLGK----KNVIAETGAGQHGVATATACAKFGLDCTVYMGAEDYRRQALNVFRMRLLGAKVHPVTS 229 (477)
T ss_pred CCcccHHHHHHHHHHhcc----cceeeccCCCccchHHHHHHHHhCCceEEEechhHHHHHHHHHHHHHHhCceEeecCC
Confidence 477788888888999988 2556667779999999999999999999999642 345688999999999999875
Q ss_pred C-CChHHHHHHHHH-HHHhCCCccccCC-CC----CCCchhhhhhchHHHHHhhh----CCCCCEEEEecCCCccHHHHH
Q 023695 78 A-KGMKGAVQKAEE-ILAKTPNAYMLQQ-FE----NPANPKIHYETTGPELWKGS----GGRIDALVSGIGTGGTITGAG 146 (278)
Q Consensus 78 ~-~~~~~~~~~a~~-~~~~~~~~~~~~~-~~----~~~~~~~g~~t~~~EI~~ql----~~~~d~iv~~vG~Gg~~aGi~ 146 (278)
. ...+++-..+-+ +..+.+..+|+-. -. -|.....-+.+|+-|-..|. +..||.||.|+|+|++.+|+.
T Consensus 230 Gt~tLrda~sea~r~wvt~~ett~y~~gs~~gphp~pt~vr~fhsvIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf 309 (477)
T KOG1395|consen 230 GTRTLRDATSEAGRLWVTNSETTHYAAGSAIGPHPYPTVVRTFHSVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLF 309 (477)
T ss_pred CceehhcccchhhhhhhhhhheeeeeecccCCCCCcHHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCCcccccc
Confidence 2 234443333322 2222223334321 11 12222235678888876664 346999999999999999999
Q ss_pred HHHHhhCCCcEEEEEecCCCCc--------ccCCCCCC-----c--cccccCCCCCccc-------------c---cccc
Q 023695 147 KFLKEKNPNIKLYGIEPTESPV--------LSGGKPGP-----H--KIQGIGAGFVPGV-------------L---EVNI 195 (278)
Q Consensus 147 ~~~k~~~~~~~vigV~~~~~~~--------~~~~~~~~-----~--~~~gl~~~~~~~~-------------~---~~~~ 195 (278)
.-|..- ..+++|+|+..+... +..++.+. + ..+..|-.+.|.. + ....
T Consensus 310 ~pF~~d-k~v~~igveaagdg~dtp~hsatltagd~Gv~hG~~ty~lq~~dGqi~~phsIsAGLdYpGvgPels~~k~~g 388 (477)
T KOG1395|consen 310 SPFIRD-KSVGMIGVEAAGDGVDTPKHSATLTAGDVGVFHGVTTYVLQDTDGQIFDPHSISAGLDYPGVGPELSHLKETG 388 (477)
T ss_pred chhhcc-chhheeeeeecccccCCcchhceeecccccccccceeeeeeccCCccccCCccccCCCCCCCChhHHHHHhcC
Confidence 888743 346888888766532 22222210 0 0111111111111 1 1122
Q ss_pred cCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcc
Q 023695 196 IDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLS 260 (278)
Q Consensus 196 ~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~ 260 (278)
..+.+.++|.|++++.+.|.+.|||+..|.+..|+++..++.+.. .+++.+|+-+++.|+|++.
T Consensus 389 rae~isitd~eclegfk~~srlEGIIPAlEssHAva~~~~lck~l-~~~k~ivi~~sGrGdkDvq 452 (477)
T KOG1395|consen 389 RAEFISITDAECLEGFKQLSRLEGIIPALESSHAVAGEAELCKTL-PEDKVIVINISGRGDKDVQ 452 (477)
T ss_pred ceeEEecChHHHHHHHHHHHHhcccccCCchhhHHHHHHHhcccc-CCCcEEEEEecCCCCchHH
Confidence 346899999999999999999999999999999999988887776 4788899988888998765
No 87
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=93.20 E-value=0.61 Score=37.55 Aligned_cols=100 Identities=11% Similarity=0.076 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHcCCeE-EEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCCCCCCchhh
Q 023695 34 TGIGLAFMAAAKQYRL-IITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKI 112 (278)
Q Consensus 34 ~g~a~A~~a~~~G~~~-~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 112 (278)
-|..+.++++.+|.++ .-+.+.+.-..-+..+...|-.|.++++. .+...+.++.+.+++|+.-.+..++.+.+ ..
T Consensus 12 DG~~i~~~~~~~g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~~--~~~~~~~~~~l~~~yP~l~ivg~~~g~f~-~~ 88 (172)
T PF03808_consen 12 DGMPIVWAARLLGRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGGS--EEVLEKAAANLRRRYPGLRIVGYHHGYFD-EE 88 (172)
T ss_pred CCHHHHHHHHHcCCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeCC--HHHHHHHHHHHHHHCCCeEEEEecCCCCC-hh
Confidence 4678999999999887 33333333445566677788999999973 34455666777788776444432222121 11
Q ss_pred hhhchHHHHHhhhC-CCCCEEEEecCCCc
Q 023695 113 HYETTGPELWKGSG-GRIDALVSGIGTGG 140 (278)
Q Consensus 113 g~~t~~~EI~~ql~-~~~d~iv~~vG~Gg 140 (278)
-.. +|.+++. ..||.|++++|+--
T Consensus 89 ~~~----~i~~~I~~~~pdiv~vglG~Pk 113 (172)
T PF03808_consen 89 EEE----AIINRINASGPDIVFVGLGAPK 113 (172)
T ss_pred hHH----HHHHHHHHcCCCEEEEECCCCH
Confidence 223 3333332 36999999998864
No 88
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=90.86 E-value=2 Score=38.43 Aligned_cols=54 Identities=15% Similarity=0.189 Sum_probs=42.2
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 19 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 19 l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
+++|.+.+|. .+|..|...+..++.+|.+++++.+...++.|++.++.+|++.+
T Consensus 170 ~~~g~~vlI~-G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v 223 (355)
T cd08230 170 TWNPRRALVL-GAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV 223 (355)
T ss_pred cCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe
Confidence 4566566665 56999999999999999986666665556788999999999863
No 89
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=90.76 E-value=2.9 Score=37.35 Aligned_cols=57 Identities=26% Similarity=0.451 Sum_probs=44.1
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023695 16 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 75 (278)
Q Consensus 16 ~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~ 75 (278)
.+.+++|++.||.+.+|.-|..+--.|+.+|...++... ++.|.+.++.+||+.+..
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~---s~~k~~~~~~lGAd~vi~ 193 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVS---SSEKLELLKELGADHVIN 193 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEec---CHHHHHHHHhcCCCEEEc
Confidence 467888888899999999999999999999984444332 246666889999976554
No 90
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=89.99 E-value=5 Score=35.86 Aligned_cols=59 Identities=22% Similarity=0.349 Sum_probs=42.3
Q ss_pred HHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023695 13 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 75 (278)
Q Consensus 13 a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~ 75 (278)
+..+..+++|++.+|.. +|..|.+++.+++.+|.+++++ +.++.+++.++.+|++.++.
T Consensus 158 a~~~~~~~~g~~VlV~G-~G~vG~~a~~~a~~~G~~vi~~---~~~~~~~~~~~~~Ga~~~i~ 216 (349)
T TIGR03201 158 AAVQAGLKKGDLVIVIG-AGGVGGYMVQTAKAMGAAVVAI---DIDPEKLEMMKGFGADLTLN 216 (349)
T ss_pred HHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEE---cCCHHHHHHHHHhCCceEec
Confidence 34445677876655554 4999999999999999975443 33567888889999975543
No 91
>KOG2616 consensus Pyridoxalphosphate-dependent enzyme/predicted threonine synthase [Amino acid transport and metabolism]
Probab=89.84 E-value=0.75 Score=38.19 Aligned_cols=58 Identities=10% Similarity=0.084 Sum_probs=45.0
Q ss_pred EEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcC
Q 023695 199 VVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGER 257 (278)
Q Consensus 199 ~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~ 257 (278)
...||++|+.+++...++..+.+++|.+|.++-...+...+.. +.-.++++-+....|
T Consensus 148 se~vS~ee~~~ti~k~yes~~YiLdPHTAVav~~~~r~idkt~-ps~~~i~lstAh~aK 205 (266)
T KOG2616|consen 148 SERVSNEETTQTIKKIYESNHYILDPHTAVAVNYHYRQIDKTQ-PSIPYICLSTAHPAK 205 (266)
T ss_pred hhhcCcHHHHHHHHHHhccCCeeecCchHHHHHHHHHHHhccC-CCCceEEecccChhh
Confidence 4579999999999999999999999999999999998877764 333444444334333
No 92
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=89.67 E-value=5.2 Score=35.03 Aligned_cols=58 Identities=21% Similarity=0.249 Sum_probs=43.8
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 75 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~ 75 (278)
+.+.+++|++.+|...+|..|.++.-.|+.+|.+++++. .++.+.+.++.+|++-++.
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~---~s~~~~~~l~~~Ga~~vi~ 194 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCA---GSDDKVAWLKELGFDAVFN 194 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCCEEEe
Confidence 456678887767777789999999999999999865543 2457888888899865443
No 93
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=89.37 E-value=3.6 Score=33.03 Aligned_cols=120 Identities=16% Similarity=0.105 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHcCCeEEEEeCC-CCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCCCCCCchhh
Q 023695 34 TGIGLAFMAAAKQYRLIITMPA-SMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKI 112 (278)
Q Consensus 34 ~g~a~A~~a~~~G~~~~vv~p~-~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 112 (278)
-|..+.++++.+|.+..--++. +.-..-++.+...+..|.++++. .+...+.++.+.+++|+...+..++.+.. ..
T Consensus 10 DG~~l~~~~~~~~~~~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~--~~~~~~~~~~l~~~yp~l~i~g~~~g~~~-~~ 86 (171)
T cd06533 10 DGIGVVWAARLLGGPLPERVTGSDLMPALLELAAQKGLRVFLLGAK--PEVLEKAAERLRARYPGLKIVGYHHGYFG-PE 86 (171)
T ss_pred CcHHHHHHHHHcCCCCCcccCcHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCcEEEEecCCCCC-hh
Confidence 3678899999999883222222 11233455566678999999863 24444555677777776544432222221 11
Q ss_pred hhhchHHHHHhhhC-CCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEEE
Q 023695 113 HYETTGPELWKGSG-GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 161 (278)
Q Consensus 113 g~~t~~~EI~~ql~-~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vigV 161 (278)
. -.+|.+++. ..||.|++++|+---=. .+...+...+..-+++|
T Consensus 87 ~----~~~i~~~I~~~~pdiv~vglG~PkQE~-~~~~~~~~l~~~v~~~v 131 (171)
T cd06533 87 E----EEEIIERINASGADILFVGLGAPKQEL-WIARHKDRLPVPVAIGV 131 (171)
T ss_pred h----HHHHHHHHHHcCCCEEEEECCCCHHHH-HHHHHHHHCCCCEEEEe
Confidence 1 112444442 36999999998864321 22233333444455555
No 94
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=88.78 E-value=7.3 Score=35.65 Aligned_cols=57 Identities=25% Similarity=0.338 Sum_probs=42.9
Q ss_pred HHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023695 13 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 72 (278)
Q Consensus 13 a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v 72 (278)
+.++..+++|++.+| ..+|..|..++..|+.+|.+.+++.. ..+.+++..+.+|++.
T Consensus 177 a~~~~~~~~g~~VlV-~G~G~iG~~aiqlAk~~Ga~~vi~~d--~~~~r~~~a~~~Ga~~ 233 (393)
T TIGR02819 177 GAVTAGVGPGSTVYI-AGAGPVGLAAAASAQLLGAAVVIVGD--LNPARLAQARSFGCET 233 (393)
T ss_pred HHHhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCceEEEeC--CCHHHHHHHHHcCCeE
Confidence 344566778766555 67799999999999999998766432 2467888899999974
No 95
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=88.02 E-value=4.6 Score=34.88 Aligned_cols=58 Identities=28% Similarity=0.266 Sum_probs=40.5
Q ss_pred HHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 13 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 13 a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
+.++....+|.+.+| ...|..|..++..++.+|.+.++++ +.++.|++..+.+|++.+
T Consensus 112 al~~~~~~~g~~VlV-~G~G~vG~~~~~~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~ 169 (280)
T TIGR03366 112 ALEAAGDLKGRRVLV-VGAGMLGLTAAAAAAAAGAARVVAA--DPSPDRRELALSFGATAL 169 (280)
T ss_pred HHHhccCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCcEe
Confidence 333333456755555 4668999999999999999745444 345678888888998543
No 96
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=87.13 E-value=9 Score=31.56 Aligned_cols=66 Identities=18% Similarity=0.131 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHc--CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHH-HcCCEE
Q 023695 4 KIGYSMISDAEAK--GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR-AFGAEL 72 (278)
Q Consensus 4 R~a~~~l~~a~~~--g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~-~~Ga~v 72 (278)
|+..+.+..+.+. +.....+++++.-..||.|..+|......|.+++++ . ....++..+. .+|++.
T Consensus 7 ~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~-D--~~~~~~~~~~~~~g~~~ 75 (200)
T cd01075 7 YGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVA-D--INEEAVARAAELFGATV 75 (200)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE-c--CCHHHHHHHHHHcCCEE
Confidence 5777778887766 233333356777788999999999999999987754 2 2344444443 335543
No 97
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=86.46 E-value=8.2 Score=34.14 Aligned_cols=57 Identities=28% Similarity=0.377 Sum_probs=42.7
Q ss_pred HHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 13 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 13 a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
+.+.+.+.++.+.+|...+|..|.+++..|+.+|.+++++... . ++..++.+|++.+
T Consensus 169 ~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~---~-~~~~~~~~g~~~~ 225 (350)
T cd08274 169 MLERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGA---A-KEEAVRALGADTV 225 (350)
T ss_pred HHhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCc---h-hhHHHHhcCCeEE
Confidence 3455667888777777777999999999999999996655432 2 6677788888643
No 98
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=86.34 E-value=5.2 Score=35.85 Aligned_cols=61 Identities=23% Similarity=0.241 Sum_probs=45.9
Q ss_pred HHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 13 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 13 a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
++++..++||+. |....-|-.|....-+|+.+|.+++.+ +.++.|++..+.+||+.+....
T Consensus 158 alk~~~~~pG~~-V~I~G~GGlGh~avQ~Aka~ga~Via~---~~~~~K~e~a~~lGAd~~i~~~ 218 (339)
T COG1064 158 ALKKANVKPGKW-VAVVGAGGLGHMAVQYAKAMGAEVIAI---TRSEEKLELAKKLGADHVINSS 218 (339)
T ss_pred ehhhcCCCCCCE-EEEECCcHHHHHHHHHHHHcCCeEEEE---eCChHHHHHHHHhCCcEEEEcC
Confidence 455567788865 666666677777777888888888877 5567888888999998877653
No 99
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=86.06 E-value=11 Score=33.36 Aligned_cols=56 Identities=21% Similarity=0.222 Sum_probs=42.8
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHH-cCCEEE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRA-FGAELV 73 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~-~Ga~v~ 73 (278)
+.+.+++|++.+|...+|.-|.+++-.|+.+|.++++..+ +..+.+.++. +|++-+
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~---~~~~~~~~~~~lGa~~v 201 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAG---SDEKVDLLKNKLGFDDA 201 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhcCCcee
Confidence 3466788877777777899999999999999998555433 3577887877 898543
No 100
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=85.56 E-value=5.8 Score=34.90 Aligned_cols=58 Identities=19% Similarity=0.298 Sum_probs=43.8
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 75 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~ 75 (278)
+.+.+++|++.+|...+|--|.+++..|+..|.++++..+ +..+.+.++.+|++.++.
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~---s~~~~~~~~~lGa~~vi~ 189 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKVAYLKKLGFDVAFN 189 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEEe
Confidence 4566788877667666799999999999999998665533 356788888899865443
No 101
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=85.54 E-value=6 Score=34.92 Aligned_cols=59 Identities=20% Similarity=0.131 Sum_probs=44.4
Q ss_pred cCCCCCCCeEEEEeCC---ChHHHHHHHHHHHcCCeEEEEeCCCC--CHHHHHHHHHcCCEEEEeC
Q 023695 16 KGLITPGESVLIEPTS---GNTGIGLAFMAAAKQYRLIITMPASM--SLERRIILRAFGAELVLTD 76 (278)
Q Consensus 16 ~g~l~~g~~~vv~ass---GN~g~a~A~~a~~~G~~~~vv~p~~~--~~~~~~~~~~~Ga~v~~~~ 76 (278)
.|.++ | .+|+-... +|.++|+..+++++|++++++.|++. ++..++.++..|+++...+
T Consensus 145 ~g~l~-g-~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~ 208 (301)
T TIGR00670 145 FGRLD-G-LKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETE 208 (301)
T ss_pred hCCCC-C-CEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEEC
Confidence 46543 3 34444445 69999999999999999999999864 5555667777899988776
No 102
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=85.46 E-value=33 Score=32.72 Aligned_cols=51 Identities=16% Similarity=0.075 Sum_probs=41.5
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
.+++.-..|.-|++.+..|+.+|-+++++ +..+.++++.+.+|++.+.++.
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~---D~~~~rle~aeslGA~~v~i~~ 216 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAF---DTRPEVAEQVESMGAEFLELDF 216 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHcCCeEEEecc
Confidence 45888899999999999999999864444 4567889999999999766553
No 103
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=85.40 E-value=11 Score=33.69 Aligned_cols=58 Identities=24% Similarity=0.231 Sum_probs=41.3
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 14 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 14 ~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
.+.+.+++|++.+|. .+|-.|.+++..|+.+|.+.++.+. .++.+++.++.+|++.++
T Consensus 169 ~~~~~~~~g~~VlV~-G~g~vG~~a~~~ak~~G~~~Vi~~~--~~~~~~~~~~~~Ga~~~i 226 (358)
T TIGR03451 169 VNTGGVKRGDSVAVI-GCGGVGDAAIAGAALAGASKIIAVD--IDDRKLEWAREFGATHTV 226 (358)
T ss_pred HhccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHcCCceEE
Confidence 345667888776666 5688999999999999987444442 245678888888985433
No 104
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=85.26 E-value=5.4 Score=34.89 Aligned_cols=69 Identities=22% Similarity=0.318 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHcCCCCCCCeEEEEeC-CChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEeCC
Q 023695 5 IGYSMISDAEAKGLITPGESVLIEPT-SGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDP 77 (278)
Q Consensus 5 ~a~~~l~~a~~~g~l~~g~~~vv~as-sGN~g~a~A~~a~~~G~~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~~ 77 (278)
.|+-||.+-.+ |.+|+ .|+--+ .+--|+++--.|+.+|++.+=++.+... ++-.+.++.+||+-++.+.
T Consensus 147 TAyrmL~dfv~---L~~GD-~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~ieel~~~Lk~lGA~~ViTee 217 (354)
T KOG0025|consen 147 TAYRMLKDFVQ---LNKGD-SVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIEELKKQLKSLGATEVITEE 217 (354)
T ss_pred HHHHHHHHHHh---cCCCC-eeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHHHHHHHHHHcCCceEecHH
Confidence 35667777665 45564 555433 3556778888899999999999876543 4556788999999988874
No 105
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=84.99 E-value=4.9 Score=35.69 Aligned_cols=57 Identities=18% Similarity=0.110 Sum_probs=41.2
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 14 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 14 ~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
.++..+++|++.+|.. .|..|.+++..|+.+|.+++++.+ ++.|++.++.+|++.+.
T Consensus 158 ~~~~~~~~g~~VlV~G-~g~iG~~a~~~a~~~G~~vi~~~~---~~~~~~~a~~~Ga~~vi 214 (329)
T TIGR02822 158 LLRASLPPGGRLGLYG-FGGSAHLTAQVALAQGATVHVMTR---GAAARRLALALGAASAG 214 (329)
T ss_pred HHhcCCCCCCEEEEEc-CCHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHhCCceec
Confidence 3445678887666655 588899999999999987544422 35678889999997543
No 106
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=84.45 E-value=9.3 Score=30.90 Aligned_cols=97 Identities=12% Similarity=0.085 Sum_probs=55.8
Q ss_pred HHHHHHHHHHcCCeEEEEeCC-CCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCCCCCCchhhh
Q 023695 35 GIGLAFMAAAKQYRLIITMPA-SMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIH 113 (278)
Q Consensus 35 g~a~A~~a~~~G~~~~vv~p~-~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 113 (278)
|..+.++++.+|.+..--++. +.-..-++.....|..|.++++. .+...+.++.+.+++|+.-.+.. +.+... .
T Consensus 13 G~~iv~~~r~~g~~~~~Rv~G~dl~~~l~~~~~~~~~~vfllG~~--~~v~~~~~~~l~~~yP~l~i~g~-~g~f~~-~- 87 (177)
T TIGR00696 13 GIGVVWGLKLLGYPQQSRVAGPDLMEELCQRAGKEKLPIFLYGGK--PDVLQQLKVKLIKEYPKLKIVGA-FGPLEP-E- 87 (177)
T ss_pred cHHHHHHHHHcCCCCCCccChHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCCEEEEE-CCCCCh-H-
Confidence 577889999999764222221 11123344455678899999863 34455666777778776443321 111111 1
Q ss_pred hhchHHHHHhhhC-CCCCEEEEecCCC
Q 023695 114 YETTGPELWKGSG-GRIDALVSGIGTG 139 (278)
Q Consensus 114 ~~t~~~EI~~ql~-~~~d~iv~~vG~G 139 (278)
--.+|.+++. ..||.++++.|+=
T Consensus 88 ---~~~~i~~~I~~s~~dil~VglG~P 111 (177)
T TIGR00696 88 ---ERKAALAKIARSGAGIVFVGLGCP 111 (177)
T ss_pred ---HHHHHHHHHHHcCCCEEEEEcCCc
Confidence 1123445542 3599999999874
No 107
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=84.14 E-value=6.7 Score=32.69 Aligned_cols=51 Identities=25% Similarity=0.335 Sum_probs=42.5
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 26 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 26 vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
+|+..+|+.|..++.+-...+.++++++... +....+.++..|++++..+-
T Consensus 2 ~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-~~~~~~~l~~~g~~vv~~d~ 52 (233)
T PF05368_consen 2 LVTGATGNQGRSVVRALLSAGFSVRALVRDP-SSDRAQQLQALGAEVVEADY 52 (233)
T ss_dssp EEETTTSHHHHHHHHHHHHTTGCEEEEESSS-HHHHHHHHHHTTTEEEES-T
T ss_pred EEECCccHHHHHHHHHHHhCCCCcEEEEecc-chhhhhhhhcccceEeeccc
Confidence 6778899999999999999999999998776 45567778889999986653
No 108
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=83.97 E-value=18 Score=32.04 Aligned_cols=56 Identities=27% Similarity=0.404 Sum_probs=41.7
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
+...+.++.+.+| ..+|..|.+++..|+.+|.+.++.+.. ++.+.+.++.+|++.+
T Consensus 168 ~~~~~~~g~~vlI-~g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~v 223 (350)
T cd08256 168 DRANIKFDDVVVL-AGAGPLGLGMIGAARLKNPKKLIVLDL--KDERLALARKFGADVV 223 (350)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCcEEEEEcC--CHHHHHHHHHcCCcEE
Confidence 4566777766555 667999999999999999876666544 3567778888888544
No 109
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=83.85 E-value=14 Score=33.30 Aligned_cols=57 Identities=19% Similarity=0.349 Sum_probs=40.6
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
+...+++|++.+|. .+|..|..++..|+.+|.+.++++ +.++.|++.++.+|++.++
T Consensus 185 ~~~~i~~g~~VlV~-G~G~vG~~a~~lak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i 241 (371)
T cd08281 185 NTAGVRPGQSVAVV-GLGGVGLSALLGAVAAGASQVVAV--DLNEDKLALARELGATATV 241 (371)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEE--cCCHHHHHHHHHcCCceEe
Confidence 44567788766665 468999999999999998533333 2356778888889986443
No 110
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=83.74 E-value=18 Score=32.11 Aligned_cols=57 Identities=26% Similarity=0.344 Sum_probs=39.5
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
+...+++|.+.+|.+ +|..|.+++..|+.+|.+.++++. .+..+...++.+|++.++
T Consensus 166 ~~~~~~~g~~vlI~g-~g~vG~~a~q~a~~~G~~~v~~~~--~~~~~~~~~~~~ga~~~i 222 (351)
T cd08233 166 RRSGFKPGDTALVLG-AGPIGLLTILALKAAGASKIIVSE--PSEARRELAEELGATIVL 222 (351)
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCEEE
Confidence 445667776666664 689999999999999985444442 345677777778875443
No 111
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=83.11 E-value=19 Score=31.82 Aligned_cols=58 Identities=22% Similarity=0.365 Sum_probs=39.8
Q ss_pred HcCCCCCC--CeEEEEeCCChHHHHHHHHHHHcCC-eEEEEeCCCCCHHHHHHHHH-cCCEEEEe
Q 023695 15 AKGLITPG--ESVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPASMSLERRIILRA-FGAELVLT 75 (278)
Q Consensus 15 ~~g~l~~g--~~~vv~assGN~g~a~A~~a~~~G~-~~~vv~p~~~~~~~~~~~~~-~Ga~v~~~ 75 (278)
+.+.+++| ++.+|...+|..|.++.-.|+.+|. +++++.+ ++.+.+.++. +|++-++.
T Consensus 146 ~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~---s~~~~~~~~~~lGa~~vi~ 207 (345)
T cd08293 146 EKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICG---SDEKCQLLKSELGFDAAIN 207 (345)
T ss_pred HhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHhcCCcEEEE
Confidence 34556665 5666766679999999999999998 5555533 3466777665 88865443
No 112
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=83.05 E-value=17 Score=32.45 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=41.7
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHH-HcCCEEEE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR-AFGAELVL 74 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~-~~Ga~v~~ 74 (278)
+.+.+++|.+.+|...+|.-|.++...|+.+|.+++++. .+..|.+.++ .+|++-+.
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~---~~~~k~~~~~~~lGa~~vi 209 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSA---GSSQKVDLLKNKLGFDEAF 209 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHhcCCCEEE
Confidence 346678887777777779999999999999998855442 2456777776 68986544
No 113
>PRK14030 glutamate dehydrogenase; Provisional
Probab=82.61 E-value=10 Score=35.34 Aligned_cols=50 Identities=12% Similarity=-0.013 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEe
Q 023695 4 KIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITM 53 (278)
Q Consensus 4 R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~ 53 (278)
|+..+.+..+.+..-+...+.+++.-..||-|..+|.....+|.+++.+-
T Consensus 209 ~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavS 258 (445)
T PRK14030 209 FGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATELGAKVVTIS 258 (445)
T ss_pred HHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 67777777776554445555678888999999999999999999988854
No 114
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=82.46 E-value=15 Score=31.89 Aligned_cols=55 Identities=24% Similarity=0.234 Sum_probs=38.3
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023695 14 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 71 (278)
Q Consensus 14 ~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~ 71 (278)
.+...+++|.+.+|...+|..|.+++..|+.+|.+.+++... ..+...++.+|++
T Consensus 132 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~ 186 (324)
T cd08292 132 LDFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRR---DAGVAELRALGIG 186 (324)
T ss_pred HHhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecC---HHHHHHHHhcCCC
Confidence 344567777766666667899999999999999987666443 2445555556763
No 115
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=82.00 E-value=15 Score=32.64 Aligned_cols=58 Identities=16% Similarity=0.160 Sum_probs=40.5
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 14 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 14 ~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
.++....+|.+.+|. .+|..|++....++.+|.+.++++. .++.+++.++.+|++.+.
T Consensus 162 l~~~~~~~g~~VlV~-G~G~vG~~aiqlak~~G~~~Vi~~~--~~~~~~~~a~~lGa~~vi 219 (343)
T PRK09880 162 AHQAGDLQGKRVFVS-GVGPIGCLIVAAVKTLGAAEIVCAD--VSPRSLSLAREMGADKLV 219 (343)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEEe--CCHHHHHHHHHcCCcEEe
Confidence 333334566565555 5699999999999999986444433 246788888999997654
No 116
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=81.97 E-value=11 Score=33.27 Aligned_cols=57 Identities=26% Similarity=0.359 Sum_probs=40.1
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCe-EEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 14 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYR-LIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 14 ~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~-~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
.++..+++|.+.+|. .+|--|.+++..++.+|.+ +++ +. .++.+++.++.+|++.+.
T Consensus 156 l~~~~~~~g~~vlV~-G~G~vG~~~~~~ak~~G~~~vi~-~~--~~~~~~~~~~~~ga~~~i 213 (339)
T cd08239 156 LRRVGVSGRDTVLVV-GAGPVGLGALMLARALGAEDVIG-VD--PSPERLELAKALGADFVI 213 (339)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEE-EC--CCHHHHHHHHHhCCCEEE
Confidence 344456777666665 5689999999999999998 444 32 245677778888885443
No 117
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=81.90 E-value=18 Score=31.96 Aligned_cols=51 Identities=22% Similarity=0.261 Sum_probs=37.4
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023695 18 LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 72 (278)
Q Consensus 18 ~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v 72 (278)
.++++.+.+|.. +|..|.+++..|+.+|.+.+++.+ ++.++..++.+|++-
T Consensus 160 ~~~~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~ 210 (333)
T cd08296 160 GAKPGDLVAVQG-IGGLGHLAVQYAAKMGFRTVAISR---GSDKADLARKLGAHH 210 (333)
T ss_pred CCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHcCCcE
Confidence 566776656655 899999999999999998555433 345677778888743
No 118
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=81.33 E-value=3.7 Score=32.34 Aligned_cols=42 Identities=17% Similarity=0.079 Sum_probs=32.9
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCC
Q 023695 26 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA 70 (278)
Q Consensus 26 vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga 70 (278)
|....+||+|.|+|...+..|.+++++.++. ...+.++..+-
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~---~~~~~i~~~~~ 43 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE---EQIEEINETRQ 43 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH---HHHHHHHHHTS
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH---HHHHHHHHhCC
Confidence 5567999999999999999999999997754 55555554433
No 119
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.66 E-value=12 Score=33.38 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=44.0
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 17 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 17 g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
--+.||...-|..-+| .|.----+|+.+|++++++-.. +..|.+.++.+||+......
T Consensus 177 ~g~~pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~--~~kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 177 SGLGPGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTS--SKKKEEAIKSLGADVFVDST 234 (360)
T ss_pred cCCCCCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCC--chhHHHHHHhcCcceeEEec
Confidence 3357997655555556 8887788899999999998443 24678889999999987764
No 120
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=80.55 E-value=21 Score=31.49 Aligned_cols=52 Identities=25% Similarity=0.261 Sum_probs=38.2
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023695 18 LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 72 (278)
Q Consensus 18 ~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v 72 (278)
.++++...+|...+|..|.+++..|+.+|.++++..+. +.+.+.++.+|++-
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~ 213 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVG---DEKLELAKELGADA 213 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC---HHHHHHHHHcCCcE
Confidence 56777676777777789999999999999986665333 35666667777643
No 121
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=80.48 E-value=15 Score=32.03 Aligned_cols=48 Identities=19% Similarity=0.251 Sum_probs=34.8
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023695 22 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 72 (278)
Q Consensus 22 g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v 72 (278)
+++.+|...+|..|.+++..|+.+|.++++.... +.+.+.++.+|++-
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~ 194 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTGK---ADAADYLKKLGAKE 194 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecC---HHHHHHHHHcCCCE
Confidence 4455666666999999999999999986555333 45677777888743
No 122
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=80.44 E-value=12 Score=33.26 Aligned_cols=57 Identities=18% Similarity=0.166 Sum_probs=40.9
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 14 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 14 ~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
.+...+++|.+.+|. .+|..|.+++..|+.+|.+.++.+.. +..+++.++.+|++-+
T Consensus 153 ~~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~Ga~~~ 209 (347)
T PRK10309 153 FHLAQGCEGKNVIII-GAGTIGLLAIQCAVALGAKSVTAIDI--NSEKLALAKSLGAMQT 209 (347)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEECC--CHHHHHHHHHcCCceE
Confidence 344566777666665 57999999999999999985544432 4567777888888543
No 123
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=80.25 E-value=16 Score=31.80 Aligned_cols=56 Identities=25% Similarity=0.341 Sum_probs=40.7
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 14 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 14 ~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
.+.+.++++++.+|. .+|-.|.+++..|+.+|.+.+++ ..++.+.+.++.+|++.+
T Consensus 148 ~~~~~~~~g~~vlV~-g~g~vg~~~~q~a~~~G~~vi~~---~~~~~~~~~~~~~g~~~~ 203 (319)
T cd08242 148 LEQVPITPGDKVAVL-GDGKLGLLIAQVLALTGPDVVLV---GRHSEKLALARRLGVETV 203 (319)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEE---cCCHHHHHHHHHcCCcEE
Confidence 455677888776666 47899999999999999995444 223567777777887643
No 124
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=80.17 E-value=44 Score=30.00 Aligned_cols=51 Identities=20% Similarity=0.235 Sum_probs=41.4
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHH-cCCEEEEeCC
Q 023695 25 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRA-FGAELVLTDP 77 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~-~Ga~v~~~~~ 77 (278)
+++....|.-|+..+..++.+|...++++ +.++.|+++.+. .|++++..+.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~--d~~~~Rl~~A~~~~g~~~~~~~~ 222 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVV--DRSPERLELAKEAGGADVVVNPS 222 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEe--CCCHHHHHHHHHhCCCeEeecCc
Confidence 68888999999999999999999888888 446788888877 6777666553
No 125
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=79.95 E-value=15 Score=33.57 Aligned_cols=56 Identities=29% Similarity=0.341 Sum_probs=42.8
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023695 17 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 75 (278)
Q Consensus 17 g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~ 75 (278)
..++++.+.+|...+|..|.+++..|+.+|.+.+++. .+..+...++.+|+..+.-
T Consensus 185 ~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~---~~~~~~~~~~~~g~~~~v~ 240 (398)
T TIGR01751 185 ATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVV---SSPEKAEYCRELGAEAVID 240 (398)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEc---CCHHHHHHHHHcCCCEEec
Confidence 4567776767777779999999999999999875553 2456778888899876543
No 126
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=79.79 E-value=8.6 Score=30.92 Aligned_cols=118 Identities=17% Similarity=0.123 Sum_probs=70.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 103 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 103 (278)
.+|-.-..|+-|+++|..++.+|++++.+-|...+.. .....+.+. . +.++ +.++. +...++-
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~---~~~~~~~~~--~----~l~e-------ll~~a-Div~~~~ 99 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE---GADEFGVEY--V----SLDE-------LLAQA-DIVSLHL 99 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH---HHHHTTEEE--S----SHHH-------HHHH--SEEEE-S
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh---hccccccee--e----ehhh-------hcchh-hhhhhhh
Confidence 4577778899999999999999999999987753332 334444422 1 2332 22333 4443332
Q ss_pred CCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHH--HHHHHHHhhCCCcEEEEEecCCC
Q 023695 104 FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTIT--GAGKFLKEKNPNIKLYGIEPTES 166 (278)
Q Consensus 104 ~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~a--Gi~~~~k~~~~~~~vigV~~~~~ 166 (278)
-.++.+ ..-+..|.++++ +++.+++-++-|+++- .+..++++ ..+.-.+.++...
T Consensus 100 plt~~T----~~li~~~~l~~m--k~ga~lvN~aRG~~vde~aL~~aL~~--g~i~ga~lDV~~~ 156 (178)
T PF02826_consen 100 PLTPET----RGLINAEFLAKM--KPGAVLVNVARGELVDEDALLDALES--GKIAGAALDVFEP 156 (178)
T ss_dssp SSSTTT----TTSBSHHHHHTS--TTTEEEEESSSGGGB-HHHHHHHHHT--TSEEEEEESS-SS
T ss_pred cccccc----ceeeeeeeeecc--ccceEEEeccchhhhhhhHHHHHHhh--ccCceEEEECCCC
Confidence 223322 345677888998 4789999999998864 45555554 3355455554333
No 127
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=78.98 E-value=13 Score=33.34 Aligned_cols=57 Identities=21% Similarity=0.304 Sum_probs=40.4
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
+...+++|++.+|. .+|..|.+++..++.+|.+.++.+. .++.|++.++.+|++.++
T Consensus 180 ~~~~~~~g~~VlV~-G~G~vG~~a~~~ak~~G~~~vi~~~--~~~~~~~~~~~lGa~~~i 236 (368)
T cd08300 180 NTAKVEPGSTVAVF-GLGAVGLAVIQGAKAAGASRIIGID--INPDKFELAKKFGATDCV 236 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHcCCCEEE
Confidence 44567778666666 5699999999999999985333332 235677888889986543
No 128
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=78.97 E-value=8.4 Score=28.68 Aligned_cols=39 Identities=26% Similarity=0.262 Sum_probs=23.2
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023695 35 GIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 76 (278)
Q Consensus 35 g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~ 76 (278)
|+.+...|+.+|.+++++.+ ++.|++.++.+|++.+...
T Consensus 3 G~~a~q~ak~~G~~vi~~~~---~~~k~~~~~~~Ga~~~~~~ 41 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATDR---SEEKLELAKELGADHVIDY 41 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEES---SHHHHHHHHHTTESEEEET
T ss_pred HHHHHHHHHHcCCEEEEEEC---CHHHHHHHHhhcccccccc
Confidence 55566667777744444432 3466777777776655544
No 129
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=78.84 E-value=17 Score=32.70 Aligned_cols=57 Identities=16% Similarity=0.239 Sum_probs=40.8
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
+.+.+++|++.+|. .+|.-|.+++..|+.+|.+-++.+ +.++.+++.++.+|++.++
T Consensus 179 ~~~~~~~g~~VlV~-G~G~iG~~a~q~Ak~~G~~~Vi~~--~~~~~~~~~a~~~Ga~~~i 235 (368)
T TIGR02818 179 NTAKVEEGDTVAVF-GLGGIGLSVIQGARMAKASRIIAI--DINPAKFELAKKLGATDCV 235 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHhCCCeEE
Confidence 44667888766666 569999999999999998433333 3346788888889986433
No 130
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=78.78 E-value=14 Score=33.21 Aligned_cols=57 Identities=19% Similarity=0.187 Sum_probs=40.2
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
+...+++|.+.+|. .+|..|.+++..++.+|...++++.. +..+++.++.+|++.+.
T Consensus 181 ~~~~~~~g~~VlV~-G~g~vG~~a~q~ak~~G~~~vi~~~~--~~~~~~~~~~~Ga~~~i 237 (369)
T cd08301 181 NVAKVKKGSTVAIF-GLGAVGLAVAEGARIRGASRIIGVDL--NPSKFEQAKKFGVTEFV 237 (369)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCceEE
Confidence 44567788666665 56999999999999999843333322 35678888899986444
No 131
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=78.54 E-value=35 Score=30.09 Aligned_cols=54 Identities=26% Similarity=0.428 Sum_probs=39.8
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 71 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~ 71 (278)
+...+.+|+..+| ..+|..|.++...|+..|.+.++.+... +.+.+.++.+|++
T Consensus 162 ~~~~~~~g~~vlI-~g~g~vg~~~~~lak~~G~~~v~~~~~~--~~~~~~~~~~ga~ 215 (345)
T cd08287 162 VSAGVRPGSTVVV-VGDGAVGLCAVLAAKRLGAERIIAMSRH--EDRQALAREFGAT 215 (345)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEECCC--HHHHHHHHHcCCc
Confidence 3455677766666 5589999999999999999865555443 4567777888884
No 132
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=78.47 E-value=19 Score=31.77 Aligned_cols=59 Identities=20% Similarity=0.263 Sum_probs=46.9
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHH-cCCEEEEe
Q 023695 14 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRA-FGAELVLT 75 (278)
Q Consensus 14 ~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~-~Ga~v~~~ 75 (278)
++-|..++|++.+|.+.+|-.|.-+--.|+..|.+++-+... .+|.+.++. +|-+..+-
T Consensus 143 l~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg---~eK~~~l~~~lGfD~~id 202 (340)
T COG2130 143 LDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGG---AEKCDFLTEELGFDAGID 202 (340)
T ss_pred HHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecCC---HHHHHHHHHhcCCceeee
Confidence 455788888888999999999999999999999998887654 478888877 67666543
No 133
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=78.35 E-value=31 Score=30.01 Aligned_cols=55 Identities=27% Similarity=0.322 Sum_probs=41.2
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 17 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 17 g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
+.++++.+.+|...+|..|.+++..++.+|.+.+++.. +..+.+.++.+|++.+.
T Consensus 136 ~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~ 190 (334)
T PTZ00354 136 GDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTS---SEEKVDFCKKLAAIILI 190 (334)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEE
Confidence 56777777777777899999999999999998765432 35667777778885433
No 134
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=78.29 E-value=18 Score=33.83 Aligned_cols=50 Identities=8% Similarity=-0.145 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEe
Q 023695 4 KIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITM 53 (278)
Q Consensus 4 R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~ 53 (278)
+++.+.+..+++.-.....+.+++....||-|..+|.....+|.+++.+.
T Consensus 218 ~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavS 267 (454)
T PTZ00079 218 YGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMS 267 (454)
T ss_pred HHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 56777777776554334344678888999999999999888888887554
No 135
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=78.19 E-value=37 Score=29.61 Aligned_cols=54 Identities=26% Similarity=0.213 Sum_probs=39.1
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023695 16 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 72 (278)
Q Consensus 16 ~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v 72 (278)
.+.+.+|.+.+|...+|..|.+++..|+.+|++.+.+.+ ...+...++.+|++-
T Consensus 135 ~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~---~~~~~~~~~~~g~~~ 188 (327)
T PRK10754 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---SAQKAQRAKKAGAWQ 188 (327)
T ss_pred hcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHCCCCE
Confidence 456777766666667789999999999999998665543 345666667788743
No 136
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=78.11 E-value=50 Score=30.39 Aligned_cols=48 Identities=21% Similarity=0.185 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHcCCCCCC-CeEEEEeCCChHHHH--HHHHHHHcCCeEEEEe
Q 023695 5 IGYSMISDAEAKGLITPG-ESVLIEPTSGNTGIG--LAFMAAAKQYRLIITM 53 (278)
Q Consensus 5 ~a~~~l~~a~~~g~l~~g-~~~vv~assGN~g~a--~A~~a~~~G~~~~vv~ 53 (278)
....++.+.+++|.+..| ...||+..++..|+| +|.+. ..|.+++++-
T Consensus 23 ~v~~qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~ 73 (398)
T PRK13656 23 NVKEQIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVF 73 (398)
T ss_pred HHHHHHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEe
Confidence 355677788888887554 345777777777777 55556 6788766664
No 137
>PLN02740 Alcohol dehydrogenase-like
Probab=78.00 E-value=15 Score=33.28 Aligned_cols=56 Identities=21% Similarity=0.192 Sum_probs=40.3
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCe-EEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYR-LIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~-~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
+...+++|++.+|. ..|.-|.+++..|+.+|.+ ++++ +.++.+++.++.+|++.+.
T Consensus 192 ~~~~~~~g~~VlV~-G~G~vG~~a~q~ak~~G~~~Vi~~---~~~~~r~~~a~~~Ga~~~i 248 (381)
T PLN02740 192 NTANVQAGSSVAIF-GLGAVGLAVAEGARARGASKIIGV---DINPEKFEKGKEMGITDFI 248 (381)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCCcEEEE---cCChHHHHHHHHcCCcEEE
Confidence 44567888665555 5799999999999999985 4444 2245778888889986533
No 138
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=77.98 E-value=12 Score=29.52 Aligned_cols=45 Identities=16% Similarity=0.180 Sum_probs=36.0
Q ss_pred ChHHHHHHHHHHHcCCeEEEEeCCC--CCH--HHH----HHHHHcCCEEEEeC
Q 023695 32 GNTGIGLAFMAAAKQYRLIITMPAS--MSL--ERR----IILRAFGAELVLTD 76 (278)
Q Consensus 32 GN~g~a~A~~a~~~G~~~~vv~p~~--~~~--~~~----~~~~~~Ga~v~~~~ 76 (278)
+|.++|++..++++|+.++++.|+. .+. ..+ +..+..|.++..++
T Consensus 13 ~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 65 (158)
T PF00185_consen 13 NRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD 65 (158)
T ss_dssp SHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES
T ss_pred ChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 8999999999999999999999987 444 223 34455689998885
No 139
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=77.27 E-value=19 Score=31.82 Aligned_cols=52 Identities=29% Similarity=0.316 Sum_probs=37.1
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 20 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 20 ~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
.+|++.+|. .+|..|.++...|+.+|.+.++++ +.++.+.+.++.+|++.++
T Consensus 162 ~~g~~vlV~-~~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~lg~~~~~ 213 (341)
T PRK05396 162 LVGEDVLIT-GAGPIGIMAAAVAKHVGARHVVIT--DVNEYRLELARKMGATRAV 213 (341)
T ss_pred CCCCeEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHhCCcEEe
Confidence 456566665 468999999999999998644444 3456777888888886433
No 140
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=77.15 E-value=20 Score=28.20 Aligned_cols=68 Identities=16% Similarity=0.242 Sum_probs=46.3
Q ss_pred cHHHHHHHHHHHHcCCCCCCCeEEEEe-CCChHHHHHHHHHHHcCCeEEEEeCC---------CCCHHHHHHHHHcCCEE
Q 023695 3 QKIGYSMISDAEAKGLITPGESVLIEP-TSGNTGIGLAFMAAAKQYRLIITMPA---------SMSLERRIILRAFGAEL 72 (278)
Q Consensus 3 ~R~a~~~l~~a~~~g~l~~g~~~vv~a-ssGN~g~a~A~~a~~~G~~~~vv~p~---------~~~~~~~~~~~~~Ga~v 72 (278)
++.+...+.+|.+.|. +.+|.+ |+|-+++-++-+..- .+++++|.-. ..+++-.+.++..|++|
T Consensus 13 ~~tle~a~erA~elgi-----k~~vVAS~tG~tA~k~lemveg-~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v 86 (186)
T COG1751 13 DETLEIAVERAKELGI-----KHIVVASSTGYTALKALEMVEG-DLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKV 86 (186)
T ss_pred HHHHHHHHHHHHhcCc-----ceEEEEecccHHHHHHHHhccc-CceEEEEEeecccccCCceecCHHHHHHHHHcCcee
Confidence 4567777888888776 555555 558877766555432 3888887631 34567788899999998
Q ss_pred EEeC
Q 023695 73 VLTD 76 (278)
Q Consensus 73 ~~~~ 76 (278)
..-.
T Consensus 87 ~~~s 90 (186)
T COG1751 87 LTQS 90 (186)
T ss_pred eeeh
Confidence 7654
No 141
>PRK08703 short chain dehydrogenase; Provisional
Probab=77.12 E-value=37 Score=28.12 Aligned_cols=30 Identities=23% Similarity=0.232 Sum_probs=25.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEe
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITM 53 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~ 53 (278)
+.+|+.++|..|.++|......|.+++++-
T Consensus 8 ~vlItG~sggiG~~la~~l~~~g~~V~~~~ 37 (239)
T PRK08703 8 TILVTGASQGLGEQVAKAYAAAGATVILVA 37 (239)
T ss_pred EEEEECCCCcHHHHHHHHHHHcCCEEEEEe
Confidence 678989999999999998888888766554
No 142
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=77.03 E-value=37 Score=29.22 Aligned_cols=54 Identities=28% Similarity=0.352 Sum_probs=37.7
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCe-EEEEeCCCCCHHHHHHHHHcCCE
Q 023695 14 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYR-LIITMPASMSLERRIILRAFGAE 71 (278)
Q Consensus 14 ~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~-~~vv~p~~~~~~~~~~~~~~Ga~ 71 (278)
.+...++++.+.+|. .+|-.|.+++..|+.+|.+ ++++ .. .+.+...++.+|++
T Consensus 122 ~~~~~~~~~~~vlI~-g~g~vg~~~~~la~~~g~~~v~~~-~~--~~~~~~~~~~~g~~ 176 (312)
T cd08269 122 FRRGWIRAGKTVAVI-GAGFIGLLFLQLAAAAGARRVIAI-DR--RPARLALARELGAT 176 (312)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEE-CC--CHHHHHHHHHhCCc
Confidence 345667777776676 4678999999999999998 4443 32 24566677777763
No 143
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=76.74 E-value=20 Score=32.25 Aligned_cols=56 Identities=20% Similarity=0.232 Sum_probs=40.4
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
+.+.+++|.+.+|. .+|..|.+++..++.+|.+.++++.. ...|++.++.+|++-+
T Consensus 178 ~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~--~~~~~~~~~~~ga~~~ 233 (365)
T cd08277 178 NTAKVEPGSTVAVF-GLGAVGLSAIMGAKIAGASRIIGVDI--NEDKFEKAKEFGATDF 233 (365)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCCcE
Confidence 45667888766666 57999999999999999853333322 4577888888898533
No 144
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=76.63 E-value=45 Score=29.68 Aligned_cols=52 Identities=29% Similarity=0.411 Sum_probs=36.7
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCC-eEEEEeCCCCCHHHHHHHHHcCCEE
Q 023695 17 GLITPGESVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPASMSLERRIILRAFGAEL 72 (278)
Q Consensus 17 g~l~~g~~~vv~assGN~g~a~A~~a~~~G~-~~~vv~p~~~~~~~~~~~~~~Ga~v 72 (278)
+.++++.+.+|. .+|..|.+++..|+.+|. +++++. .++.+...++.+|++-
T Consensus 173 ~~~~~g~~vlI~-g~g~vG~~~~~lak~~G~~~v~~~~---~~~~~~~~~~~~g~~~ 225 (361)
T cd08231 173 GPVGAGDTVVVQ-GAGPLGLYAVAAAKLAGARRVIVID---GSPERLELAREFGADA 225 (361)
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc---CCHHHHHHHHHcCCCe
Confidence 444567666666 469999999999999999 554442 2456677777888743
No 145
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=76.60 E-value=39 Score=30.95 Aligned_cols=127 Identities=16% Similarity=0.210 Sum_probs=67.6
Q ss_pred EEEeCCC-hHHHHHHHHHHHcCCeEEEEeCC-CCC----HHHHHHHHHcCC-EEEEeCCCCChHHHHHHHHHHHHh---C
Q 023695 26 LIEPTSG-NTGIGLAFMAAAKQYRLIITMPA-SMS----LERRIILRAFGA-ELVLTDPAKGMKGAVQKAEEILAK---T 95 (278)
Q Consensus 26 vv~assG-N~g~a~A~~a~~~G~~~~vv~p~-~~~----~~~~~~~~~~Ga-~v~~~~~~~~~~~~~~~a~~~~~~---~ 95 (278)
|+..|+| .+...+.+...+.+++++.|.-+ ..+ ..-.+....+|| +++.++....+. .+.+...-+. +
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~--~~~i~~aI~anA~Y 78 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDARDEFA--EDYIFPAIKANALY 78 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-HHHHH--HHTHHHHHHTT--B
T ss_pred CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchHHHHH--HHHHHHHHHHHHHh
Confidence 3556777 57777888888888998887632 212 333445678899 999998522111 1111111111 1
Q ss_pred CCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEe-cCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 96 PNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSG-IGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 96 ~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~-vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
.+.|++. ....++. ......|+.++. ..++|.-. .|.|--..=.-.+++.+.|+.+|++
T Consensus 79 eg~YpL~--tsl~Rpl--Ia~~~v~~A~~~--ga~~vaHG~TgkGNDqvRFe~~~~al~P~l~via 138 (388)
T PF00764_consen 79 EGRYPLS--TSLARPL--IAKKLVEVAREE--GADAVAHGCTGKGNDQVRFELSIRALAPELKVIA 138 (388)
T ss_dssp TTTB--C--CCCHHHH--HHHHHHHHHHHH--T-SEEE----TTSSHHHHHHHHHHHHSTTSEEE-
T ss_pred CCCcccc--ccchHHH--HHHHHHHHHHHc--CCeEEeccCCcCCCchhHHHHHHHHhCcCCcEec
Confidence 2333331 1122222 233444666765 46888884 5778777777778888889888865
No 146
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=76.49 E-value=23 Score=30.83 Aligned_cols=51 Identities=22% Similarity=0.303 Sum_probs=38.3
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 21 PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 21 ~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
+++..+|...+|..|.+++..|+.+|.+++++.. ++.|.+.++.+|++-++
T Consensus 146 ~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~---~~~~~~~~~~~g~~~~~ 196 (324)
T cd08288 146 GDGPVLVTGAAGGVGSVAVALLARLGYEVVASTG---RPEEADYLRSLGASEII 196 (324)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHhcCCCEEE
Confidence 4546666666799999999999999998666543 44778888889985433
No 147
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=76.25 E-value=27 Score=29.98 Aligned_cols=51 Identities=10% Similarity=-0.151 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 023695 4 KIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 54 (278)
Q Consensus 4 R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p 54 (278)
|+..+.+..+.+.-.....+.+++....||-|..+|.....+|.+++.+..
T Consensus 19 ~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD 69 (254)
T cd05313 19 YGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSD 69 (254)
T ss_pred HHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 677777777766554454456788899999999999999999988887654
No 148
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=76.04 E-value=6.3 Score=35.56 Aligned_cols=54 Identities=22% Similarity=0.146 Sum_probs=42.7
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
...+..+||..++-+|+.+-.++-.-.|++|.-+.......+...|+++++++-
T Consensus 41 ~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di 94 (363)
T PF01041_consen 41 KYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILWAGAEPVFVDI 94 (363)
T ss_dssp SEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-B
T ss_pred CeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHhccEEEEEec
Confidence 578889999999999998844333378888988888889999999999999985
No 149
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=76.03 E-value=58 Score=30.74 Aligned_cols=123 Identities=16% Similarity=0.153 Sum_probs=72.1
Q ss_pred HHHHHHHcCCeEEEEe-----------CCCCCHHHHHHHHHcCCEEEEeCCCCC---h-HHHHHHHHHHHHhCCCc--c-
Q 023695 38 LAFMAAAKQYRLIITM-----------PASMSLERRIILRAFGAELVLTDPAKG---M-KGAVQKAEEILAKTPNA--Y- 99 (278)
Q Consensus 38 ~A~~a~~~G~~~~vv~-----------p~~~~~~~~~~~~~~Ga~v~~~~~~~~---~-~~~~~~a~~~~~~~~~~--~- 99 (278)
+..+|+..|.++.+.. |..+....+......|++.+....+.. | -++.+...+++++.+.. +
T Consensus 262 ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~~ 341 (473)
T TIGR01064 262 MIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAEKALAYL 341 (473)
T ss_pred HHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHHHHhccchh
Confidence 4667899999988864 334455667777788999988865321 2 24444444443322111 1
Q ss_pred --ccCCCC-CC--CchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCC
Q 023695 100 --MLQQFE-NP--ANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTES 166 (278)
Q Consensus 100 --~~~~~~-~~--~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~ 166 (278)
|-.+.. .. ..........+.++.+.+ +.++||+..-||.++--+++ ..|...|+++.|...
T Consensus 342 ~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~--~akaIVv~T~SG~TA~~vSr----~rp~~PIiAvT~~~~ 407 (473)
T TIGR01064 342 TNFNDRKNSDPKPSTITEAIALSAVEAAEKL--DAKAIVVLTESGRTARLLSK----YRPNAPIIAVTPNER 407 (473)
T ss_pred hhhhhhhcccccCCChHHHHHHHHHHHHhhc--CCCEEEEEcCChHHHHHHHh----hCCCCCEEEEcCCHH
Confidence 111100 00 011123334445666666 47899999999987665544 468899999986544
No 150
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=75.97 E-value=39 Score=29.94 Aligned_cols=56 Identities=20% Similarity=0.183 Sum_probs=39.8
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023695 14 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 72 (278)
Q Consensus 14 ~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v 72 (278)
.+...++++.+.+|. .+|..|.+++..|+.+|.+.++.+... +.+.+..+.+|++.
T Consensus 159 ~~~~~~~~g~~vlI~-g~g~iG~~~~~lak~~G~~~v~~~~~~--~~~~~~~~~~g~~~ 214 (351)
T cd08285 159 AELANIKLGDTVAVF-GIGPVGLMAVAGARLRGAGRIIAVGSR--PNRVELAKEYGATD 214 (351)
T ss_pred HHccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCC--HHHHHHHHHcCCce
Confidence 345567777666666 578999999999999998755544332 46677778888743
No 151
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=75.91 E-value=21 Score=31.50 Aligned_cols=53 Identities=23% Similarity=0.276 Sum_probs=37.9
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023695 17 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 72 (278)
Q Consensus 17 g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v 72 (278)
..+.++...+|. ++|..|.+++..++.+|+..++++ ..++.+...++.+|+.+
T Consensus 163 ~~~~~~~~vlI~-g~g~vg~~~~~~a~~~g~~~v~~~--~~~~~~~~~~~~~g~~~ 215 (344)
T cd08284 163 AQVRPGDTVAVI-GCGPVGLCAVLSAQVLGAARVFAV--DPVPERLERAAALGAEP 215 (344)
T ss_pred cCCccCCEEEEE-CCcHHHHHHHHHHHHcCCceEEEE--cCCHHHHHHHHHhCCeE
Confidence 455667666666 579999999999999998433444 33456777778888864
No 152
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=75.69 E-value=42 Score=29.52 Aligned_cols=74 Identities=20% Similarity=0.160 Sum_probs=53.1
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEe-CCCCCHHHHHHHHHcC-CEEEEeCCCCChHHHHHHHHHHHHhCC
Q 023695 22 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITM-PASMSLERRIILRAFG-AELVLTDPAKGMKGAVQKAEEILAKTP 96 (278)
Q Consensus 22 g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~-p~~~~~~~~~~~~~~G-a~v~~~~~~~~~~~~~~~a~~~~~~~~ 96 (278)
|+..+||.+++-.|+++|.--++.|-+.++.- ......+..+.++..| +.-..++- .+.++..+.+.+..++.+
T Consensus 38 g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdi-s~~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 38 GEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDI-SDREEIYRLAKKVKKEVG 113 (300)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecC-CCHHHHHHHHHHHHHhcC
Confidence 44678998989999999999999998655442 3344566677777767 33345554 356888888888888763
No 153
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=75.37 E-value=21 Score=31.17 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=39.4
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 71 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~ 71 (278)
+...++++.+.+|. .+|..|.+++..++..|++.+++.+.. .+++.++.+|++
T Consensus 161 ~~~~~~~~~~vlV~-g~g~vg~~~~~la~~~g~~v~~~~~~~---~~~~~~~~~g~~ 213 (329)
T cd08298 161 KLAGLKPGQRLGLY-GFGASAHLALQIARYQGAEVFAFTRSG---EHQELARELGAD 213 (329)
T ss_pred HhhCCCCCCEEEEE-CCcHHHHHHHHHHHHCCCeEEEEcCCh---HHHHHHHHhCCc
Confidence 45667787666664 578999999999999998876664443 566777788874
No 154
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=75.34 E-value=43 Score=29.11 Aligned_cols=55 Identities=20% Similarity=0.329 Sum_probs=38.9
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 71 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~ 71 (278)
..+.++++.+.+|. .+|..|.+++..|+.+|.++++ +..+....+...++.+|++
T Consensus 158 ~~~~~~~g~~vlI~-g~g~~g~~~~~la~~~G~~v~~-~~~~~~~~~~~~~~~~g~~ 212 (306)
T cd08258 158 ERSGIRPGDTVVVF-GPGPIGLLAAQVAKLQGATVVV-VGTEKDEVRLDVAKELGAD 212 (306)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCEEEE-ECCCCCHHHHHHHHHhCCc
Confidence 34556777676775 4689999999999999988543 3223346677778888873
No 155
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=75.21 E-value=23 Score=24.02 Aligned_cols=49 Identities=20% Similarity=0.088 Sum_probs=37.3
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-----H----HHHHHHHHcCCEEEE
Q 023695 26 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-----L----ERRIILRAFGAELVL 74 (278)
Q Consensus 26 vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~-----~----~~~~~~~~~Ga~v~~ 74 (278)
++.-.+|..|.-+|.+.+.+|.+++++.+.+.. + .-.+.++..|.+++.
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 566789999999999999999999999865332 1 234566777777765
No 156
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=74.98 E-value=46 Score=28.96 Aligned_cols=52 Identities=29% Similarity=0.409 Sum_probs=38.3
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023695 17 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 71 (278)
Q Consensus 17 g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~ 71 (278)
+.++++++.+|...+|-.|.+++..++.+|.+++++.+ +..+...++.+|++
T Consensus 135 ~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~ 186 (329)
T cd08250 135 GEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCS---SDEKAEFLKSLGCD 186 (329)
T ss_pred cCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeC---cHHHHHHHHHcCCc
Confidence 56777877777777899999999999999988655543 34556666777763
No 157
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=74.96 E-value=14 Score=33.50 Aligned_cols=55 Identities=33% Similarity=0.366 Sum_probs=42.1
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 17 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 17 g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
..++++.+.+|...+|..|.+++..++.+|.+.+++.+ +..++..++.+|++.+.
T Consensus 189 ~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~---s~~~~~~~~~~G~~~~i 243 (393)
T cd08246 189 NTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVS---SEEKAEYCRALGAEGVI 243 (393)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 44677766666666799999999999999999766533 56778888889986543
No 158
>PRK07062 short chain dehydrogenase; Provisional
Probab=74.89 E-value=42 Score=28.26 Aligned_cols=32 Identities=9% Similarity=0.052 Sum_probs=26.7
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 55 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~ 55 (278)
..+|+..+|.-|.++|......|.+++++...
T Consensus 10 ~~lItGas~giG~~ia~~l~~~G~~V~~~~r~ 41 (265)
T PRK07062 10 VAVVTGGSSGIGLATVELLLEAGASVAICGRD 41 (265)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 67888899999999999998899987766543
No 159
>PRK05993 short chain dehydrogenase; Provisional
Probab=74.76 E-value=53 Score=28.04 Aligned_cols=64 Identities=23% Similarity=0.167 Sum_probs=44.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHH
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEI 91 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~ 91 (278)
..+|+..+|.-|.++|......|.+++++... ..++..++..|.+++.++-. +.+...+...+.
T Consensus 6 ~vlItGasggiG~~la~~l~~~G~~Vi~~~r~---~~~~~~l~~~~~~~~~~Dl~-d~~~~~~~~~~~ 69 (277)
T PRK05993 6 SILITGCSSGIGAYCARALQSDGWRVFATCRK---EEDVAALEAEGLEAFQLDYA-EPESIAALVAQV 69 (277)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHCCceEEEccCC-CHHHHHHHHHHH
Confidence 67888899999999999988899987776543 34555666667777777653 333333333444
No 160
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=74.66 E-value=36 Score=29.81 Aligned_cols=51 Identities=24% Similarity=0.341 Sum_probs=35.0
Q ss_pred CCeEEEE-eCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023695 22 GESVLIE-PTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 75 (278)
Q Consensus 22 g~~~vv~-assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~ 75 (278)
+++.++. ..+|..|.++...|+.+|.+.+++.+ ++.+++.++.+|++-++.
T Consensus 143 ~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~i~ 194 (324)
T cd08291 143 GAKAVVHTAAASALGRMLVRLCKADGIKVINIVR---RKEQVDLLKKIGAEYVLN 194 (324)
T ss_pred CCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEEE
Confidence 3345554 57788888888889999987554432 356777777888865544
No 161
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=74.37 E-value=29 Score=30.58 Aligned_cols=51 Identities=24% Similarity=0.237 Sum_probs=35.9
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023695 19 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 72 (278)
Q Consensus 19 l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v 72 (278)
+.+|++.+|.+ +|-.|.+++..|+.+|.+.++++ +.++.+.+.++.+|++.
T Consensus 159 ~~~g~~vlI~~-~g~vg~~a~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~ 209 (340)
T TIGR00692 159 PISGKSVLVTG-AGPIGLMAIAVAKASGAYPVIVS--DPNEYRLELAKKMGATY 209 (340)
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCCcE
Confidence 45666666654 57888888888999998744444 33567777778888743
No 162
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=74.08 E-value=29 Score=29.86 Aligned_cols=54 Identities=26% Similarity=0.369 Sum_probs=38.7
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 17 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 17 g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
+.+++|+..+|...+|..|.++...|+..|.+++.+.+. ..+.+.++.+|++-+
T Consensus 138 ~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~ 191 (320)
T cd08243 138 LGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRS---PERAALLKELGADEV 191 (320)
T ss_pred cCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHhcCCcEE
Confidence 446667676776667999999999999999986555333 356666677887443
No 163
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=74.06 E-value=52 Score=27.93 Aligned_cols=55 Identities=24% Similarity=0.339 Sum_probs=39.9
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023695 14 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 71 (278)
Q Consensus 14 ~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~ 71 (278)
++.+.+++|...++...+|..|.++...++.+|++.+++.+. ..+.+.++.+|++
T Consensus 113 l~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~ 167 (303)
T cd08251 113 FARAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATASS---DDKLEYLKQLGVP 167 (303)
T ss_pred HHhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCC---HHHHHHHHHcCCC
Confidence 345677888766666778889999999999999886555333 3566666778874
No 164
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=73.83 E-value=66 Score=28.69 Aligned_cols=43 Identities=14% Similarity=0.294 Sum_probs=28.6
Q ss_pred hHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCC-CcEEEEEe
Q 023695 117 TGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNP-NIKLYGIE 162 (278)
Q Consensus 117 ~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~-~~~vigV~ 162 (278)
...++++.- +++|.|+++ +...+.|+..++++.+. ++.|+|+.
T Consensus 199 ~~~~lL~~~-pdi~aI~~~--~~~~~~Ga~~Al~~~g~~~v~VvG~D 242 (336)
T PRK15408 199 TAEGILKAY-PDLDAIIAP--DANALPAAAQAAENLKRDKVAIVGFS 242 (336)
T ss_pred HHHHHHHHC-CCCcEEEEC--CCccHHHHHHHHHhCCCCCEEEEEeC
Confidence 344555553 578999987 34445588899988653 56777765
No 165
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=73.81 E-value=24 Score=31.04 Aligned_cols=54 Identities=19% Similarity=0.158 Sum_probs=39.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH--HHHH----HHHHcCCEEEEeCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--ERRI----ILRAFGAELVLTDP 77 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~--~~~~----~~~~~Ga~v~~~~~ 77 (278)
+...+.-+.|-+.|+-.+|+++|+++++..|+...+ .-+. ..+..|+.+.++..
T Consensus 155 k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d 214 (310)
T COG0078 155 KLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTED 214 (310)
T ss_pred EEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecC
Confidence 444555557999999999999999999999986532 2222 23445899988874
No 166
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=73.67 E-value=20 Score=31.98 Aligned_cols=63 Identities=16% Similarity=0.207 Sum_probs=50.7
Q ss_pred HHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 12 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 12 ~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
+|-+++.+++|. +++....|--|..+-..|+.+|-+=+|++. ..+.+++..+.+||+++.-..
T Consensus 160 HAcr~~~vk~Gs-~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d--~~~~Rle~Ak~~Ga~~~~~~~ 222 (354)
T KOG0024|consen 160 HACRRAGVKKGS-KVLVLGAGPIGLLTGLVAKAMGASDVVITD--LVANRLELAKKFGATVTDPSS 222 (354)
T ss_pred hhhhhcCcccCC-eEEEECCcHHHHHHHHHHHHcCCCcEEEee--cCHHHHHHHHHhCCeEEeecc
Confidence 466778889985 577789999999999999999987666653 457888989999999876553
No 167
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=73.36 E-value=43 Score=29.80 Aligned_cols=84 Identities=14% Similarity=0.225 Sum_probs=52.8
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEeCCCCChH-HHHHHHHHHHHhCCCcccc
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDPAKGMK-GAVQKAEEILAKTPNAYML 101 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~-~~~~~~~~~~~Ga~v~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~ 101 (278)
.+++.+++|..|.-.|+.=-..-=+.++++...+ ...-.+..+.||++|..++.+.+-. --......+++..++.+++
T Consensus 69 ~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv 148 (385)
T KOG2862|consen 69 QTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFV 148 (385)
T ss_pred ceEEEecCCcchHHHHHHhhcCCCCeEEEEEechHHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEE
Confidence 4688888888877766654444334444444333 4556778899999999986432211 1234455666666778888
Q ss_pred CCCCCC
Q 023695 102 QQFENP 107 (278)
Q Consensus 102 ~~~~~~ 107 (278)
-+.++.
T Consensus 149 ~hgdsS 154 (385)
T KOG2862|consen 149 THGDSS 154 (385)
T ss_pred EecCcc
Confidence 777654
No 168
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=73.33 E-value=31 Score=30.02 Aligned_cols=52 Identities=29% Similarity=0.425 Sum_probs=38.4
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023695 17 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 71 (278)
Q Consensus 17 g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~ 71 (278)
..+.++.+.+|...+|..|.+++..++..|.+++++... ..+...++.+|++
T Consensus 158 ~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~~~~ 209 (332)
T cd08259 158 AGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRS---PEKLKILKELGAD 209 (332)
T ss_pred hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHHcCCc
Confidence 567777777777778999999999999999987666532 3455556666653
No 169
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=73.26 E-value=28 Score=30.38 Aligned_cols=56 Identities=25% Similarity=0.286 Sum_probs=39.0
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
++..++++++.+|. ..|..|.+++..++.+|++++++.+ +..+++.++.+|++-++
T Consensus 156 ~~~~~~~~~~vlI~-g~g~iG~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~~ 211 (330)
T cd08245 156 RDAGPRPGERVAVL-GIGGLGHLAVQYARAMGFETVAITR---SPDKRELARKLGADEVV 211 (330)
T ss_pred HhhCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHhCCcEEe
Confidence 33556777666666 5667999999999999998666543 34566667777865443
No 170
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=73.05 E-value=18 Score=33.48 Aligned_cols=53 Identities=21% Similarity=0.265 Sum_probs=40.5
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 17 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 17 g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
+.+-+| ++++....|.-|+.+|..++.+|.+++++ +.++.+....+.+|++++
T Consensus 197 ~~~l~G-ktVvViG~G~IG~~va~~ak~~Ga~ViV~---d~d~~R~~~A~~~G~~~~ 249 (413)
T cd00401 197 DVMIAG-KVAVVAGYGDVGKGCAQSLRGQGARVIVT---EVDPICALQAAMEGYEVM 249 (413)
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHCCCEEEEE---ECChhhHHHHHhcCCEEc
Confidence 444455 46888999999999999999999975554 334567777888999764
No 171
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=72.94 E-value=62 Score=28.00 Aligned_cols=43 Identities=16% Similarity=0.184 Sum_probs=27.5
Q ss_pred hHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhC----CCcEEEEEe
Q 023695 117 TGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN----PNIKLYGIE 162 (278)
Q Consensus 117 ~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~----~~~~vigV~ 162 (278)
...+++++- .++|.|+|. +...+.|+..++++.+ .++.|+|.+
T Consensus 192 ~~~~~l~~~-~~~~ai~~~--~d~~A~g~~~al~~~g~~vp~di~vig~D 238 (305)
T cd06324 192 QAENLLKRY-PDVRLIWAA--NDQMAFGALRAAKEAGRKPGRDVLFGGVN 238 (305)
T ss_pred HHHHHHHHC-CCccEEEEC--CchHHHHHHHHHHHcCCCcCCCEEEEecC
Confidence 334444443 468888764 5566678889998876 246666665
No 172
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=72.73 E-value=40 Score=29.21 Aligned_cols=54 Identities=26% Similarity=0.405 Sum_probs=36.4
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 71 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~ 71 (278)
+...++++...+|...+|..|.+++..|+.+|.+++++.+. ..+...++.+|++
T Consensus 136 ~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~---~~~~~~~~~~g~~ 189 (324)
T cd08244 136 DLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGG---PAKTALVRALGAD 189 (324)
T ss_pred HhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHcCCC
Confidence 44566777676776667899999999999999875444322 3344555666653
No 173
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=72.72 E-value=31 Score=28.98 Aligned_cols=71 Identities=23% Similarity=0.273 Sum_probs=44.5
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAK 94 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 94 (278)
..+|+..+|.-|.++|..-...|.+++++-.........+.++..|.++..+..+ .+.++..+...+..++
T Consensus 10 ~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (260)
T PRK12823 10 VVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEA 81 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 6789999999999999999999998777654322223334455667776544321 2334444444554444
No 174
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=72.64 E-value=9.9 Score=36.61 Aligned_cols=55 Identities=15% Similarity=0.127 Sum_probs=41.4
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC------------------CCCHHHHHHHHHcCCEEEEe
Q 023695 20 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA------------------SMSLERRIILRAFGAELVLT 75 (278)
Q Consensus 20 ~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~------------------~~~~~~~~~~~~~Ga~v~~~ 75 (278)
.+| +.|+.-.+|-.|++.|..+++.|.+++++=.. +....+++.++.+|++++.-
T Consensus 135 ~~g-~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~ 207 (564)
T PRK12771 135 DTG-KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLG 207 (564)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 445 35788899999999999999999998777322 12345677888999987653
No 175
>PRK06182 short chain dehydrogenase; Validated
Probab=72.26 E-value=60 Score=27.54 Aligned_cols=67 Identities=18% Similarity=0.180 Sum_probs=45.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHh
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAK 94 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~ 94 (278)
..+|+.++|--|.++|......|.+++++... ..+++.+...+.+++.++-. +.+...+...++.++
T Consensus 5 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~l~~~~~~~~~~~~~Dv~-~~~~~~~~~~~~~~~ 71 (273)
T PRK06182 5 VALVTGASSGIGKATARRLAAQGYTVYGAARR---VDKMEDLASLGVHPLSLDVT-DEASIKAAVDTIIAE 71 (273)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhCCCeEEEeeCC-CHHHHHHHHHHHHHh
Confidence 67888889999999999988899988776543 34555555667777777642 333344444444443
No 176
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=71.70 E-value=47 Score=29.10 Aligned_cols=55 Identities=20% Similarity=0.193 Sum_probs=39.5
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHH-cCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAA-KQYRLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~-~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
+...++++.+.+|.. +|-.|.+++..++. .|.+.+++.+ ++.+++.++.+|++.+
T Consensus 156 ~~~~~~~g~~vlV~g-~g~vG~~~~~la~~~~g~~v~~~~~---~~~~~~~~~~~g~~~v 211 (338)
T PRK09422 156 KVSGIKPGQWIAIYG-AGGLGNLALQYAKNVFNAKVIAVDI---NDDKLALAKEVGADLT 211 (338)
T ss_pred HhcCCCCCCEEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC---ChHHHHHHHHcCCcEE
Confidence 445677887767766 68899999989987 4987655533 3467777788887544
No 177
>PRK10083 putative oxidoreductase; Provisional
Probab=71.56 E-value=49 Score=29.03 Aligned_cols=59 Identities=19% Similarity=0.227 Sum_probs=42.0
Q ss_pred HHHcCCCCCCCeEEEEeCCChHHHHHHHHHHH-cCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 13 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAA-KQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 13 a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~-~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
+.+...+++|.+.+|.. +|-.|.+++..|+. +|.+.++.+.. ++.|.+.++.+|++-++
T Consensus 152 ~~~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~~G~~~v~~~~~--~~~~~~~~~~~Ga~~~i 211 (339)
T PRK10083 152 VTGRTGPTEQDVALIYG-AGPVGLTIVQVLKGVYNVKAVIVADR--IDERLALAKESGADWVI 211 (339)
T ss_pred HHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHHhCCcEEe
Confidence 34556678886666655 78888888888886 69886665543 56788888889986443
No 178
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=71.51 E-value=29 Score=30.15 Aligned_cols=54 Identities=20% Similarity=0.344 Sum_probs=38.4
Q ss_pred HcCCCCCCC-eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023695 15 AKGLITPGE-SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 71 (278)
Q Consensus 15 ~~g~l~~g~-~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~ 71 (278)
++..+.+++ +.+|...+|..|.+++..|+.+|.+.++.... ..+.+.++.+|++
T Consensus 138 ~~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~---~~~~~~~~~~g~~ 192 (323)
T TIGR02823 138 ERNGLTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGK---AEEEDYLKELGAS 192 (323)
T ss_pred hhcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHhcCCc
Confidence 333367776 66666667999999999999999986655433 3455667778874
No 179
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=71.42 E-value=55 Score=28.46 Aligned_cols=53 Identities=25% Similarity=0.294 Sum_probs=37.2
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHH-cCCE
Q 023695 16 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRA-FGAE 71 (278)
Q Consensus 16 ~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~-~Ga~ 71 (278)
.+.+.++...+|...+|-.|.+++..++..|.+++++.+ +..+...++. +|++
T Consensus 140 ~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~~g~~ 193 (329)
T cd05288 140 IGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAG---SDEKCRWLVEELGFD 193 (329)
T ss_pred ccCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhhcCCc
Confidence 355677766667666789999999999999987655533 3355666665 7764
No 180
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=71.25 E-value=40 Score=29.18 Aligned_cols=53 Identities=23% Similarity=0.288 Sum_probs=36.8
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023695 16 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 71 (278)
Q Consensus 16 ~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~ 71 (278)
.+.+.++++.+|...+|..|.+++..|+.+|.+.++..+.. .+.+.++.+|++
T Consensus 133 ~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~---~~~~~~~~~g~~ 185 (323)
T cd05282 133 YLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRD---EQVEELKALGAD 185 (323)
T ss_pred hccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCh---HHHHHHHhcCCC
Confidence 34566776666666778899999999999998876654432 445556667763
No 181
>PLN02702 L-idonate 5-dehydrogenase
Probab=71.22 E-value=42 Score=30.00 Aligned_cols=57 Identities=23% Similarity=0.307 Sum_probs=41.6
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
+...+.+++..+|. .+|..|.++...++.+|.+.++.+.. +..|.+.++.+|++...
T Consensus 175 ~~~~~~~g~~vlI~-g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~~~ 231 (364)
T PLN02702 175 RRANIGPETNVLVM-GAGPIGLVTMLAARAFGAPRIVIVDV--DDERLSVAKQLGADEIV 231 (364)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHhCCCEEE
Confidence 44556777666666 57899999999999999886555543 46777788888886544
No 182
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=71.17 E-value=30 Score=28.91 Aligned_cols=56 Identities=30% Similarity=0.328 Sum_probs=39.1
Q ss_pred HHHHcCCCCCCCeEEEEe-CCC---hHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCC
Q 023695 12 DAEAKGLITPGESVLIEP-TSG---NTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGA 70 (278)
Q Consensus 12 ~a~~~g~l~~g~~~vv~a-ssG---N~g~a~A~~a~~~G~~~~vv~p~~~~-~~~~~~~~~~Ga 70 (278)
.|++.|.-. +.+|++ |.| .+.++||.+|++-|=+.+.++|+..+ ..-.+.|..+|.
T Consensus 34 SAlAAG~nA---kliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~ 94 (218)
T PF07279_consen 34 SALAAGWNA---KLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL 94 (218)
T ss_pred HHHhccccc---eEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc
Confidence 455556522 445555 444 37899999999999999999998655 345566666665
No 183
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=70.95 E-value=70 Score=28.02 Aligned_cols=52 Identities=31% Similarity=0.462 Sum_probs=35.9
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCC
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA 70 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga 70 (278)
+...+.++++.+|. .+|..|.+++..|+.+|++++++.. +..+...++.+|+
T Consensus 153 ~~~~l~~g~~vLI~-g~g~vG~~a~~lA~~~g~~v~~~~~---s~~~~~~~~~~g~ 204 (337)
T cd08261 153 RRAGVTAGDTVLVV-GAGPIGLGVIQVAKARGARVIVVDI---DDERLEFARELGA 204 (337)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEECC---CHHHHHHHHHhCC
Confidence 34566777666666 4678888888899999988665533 3556666666664
No 184
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=70.91 E-value=17 Score=35.65 Aligned_cols=52 Identities=21% Similarity=0.245 Sum_probs=39.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC---------C---------HHHHHHHHHcCCEEEEe
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM---------S---------LERRIILRAFGAELVLT 75 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~---------~---------~~~~~~~~~~Ga~v~~~ 75 (278)
+.++.-.+|-.|++.|+..++.|.+++||-.... + ...++.++.+|.+++.-
T Consensus 311 kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~ 380 (639)
T PRK12809 311 EKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLN 380 (639)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcC
Confidence 4588889999999999999999999988853321 1 12456777888877543
No 185
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=70.82 E-value=45 Score=27.99 Aligned_cols=72 Identities=18% Similarity=0.178 Sum_probs=44.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAKT 95 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 95 (278)
..+|+..+|.-|.++|..-...|.+++++......+...+.+...+.++..+..+ .+.+...+...+..++.
T Consensus 17 ~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 89 (258)
T PRK06935 17 VAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEF 89 (258)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 6789889999999999998899999888765521222333455566665544321 23334444445554443
No 186
>PRK12743 oxidoreductase; Provisional
Probab=70.81 E-value=33 Score=28.86 Aligned_cols=72 Identities=13% Similarity=0.227 Sum_probs=46.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAKT 95 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~--~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 95 (278)
+.+|+.++|.-|.++|......|.+++++...+.. ....+.++.+|.++..+..+ .+.+...+...++.++.
T Consensus 4 ~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (256)
T PRK12743 4 VAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRL 78 (256)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 67888999999999999999999988776544322 22245566678777654321 23344444455554443
No 187
>PLN02827 Alcohol dehydrogenase-like
Probab=70.71 E-value=39 Score=30.61 Aligned_cols=56 Identities=23% Similarity=0.248 Sum_probs=40.3
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
+.+.+++|++.+|. .+|--|.+++..|+.+|.+.++.+.. ++.|++.++.+|++-+
T Consensus 187 ~~~~~~~g~~VlV~-G~G~vG~~~iqlak~~G~~~vi~~~~--~~~~~~~a~~lGa~~~ 242 (378)
T PLN02827 187 NVADVSKGSSVVIF-GLGTVGLSVAQGAKLRGASQIIGVDI--NPEKAEKAKTFGVTDF 242 (378)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEECC--CHHHHHHHHHcCCcEE
Confidence 44667888666665 46889999999999999865544432 4567888888898643
No 188
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=70.60 E-value=63 Score=27.13 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=25.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEe
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITM 53 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~ 53 (278)
+.+|+.++|.-|.++|..-...|.++++.-
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~ 31 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISS 31 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEe
Confidence 468899999999999999888898866653
No 189
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=70.30 E-value=69 Score=27.42 Aligned_cols=55 Identities=27% Similarity=0.297 Sum_probs=38.1
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023695 14 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 71 (278)
Q Consensus 14 ~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~ 71 (278)
.+.+.+.++...+|...+|..|.+++..++..|.+++++.+. +.+.+.++.+|++
T Consensus 132 ~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~ 186 (325)
T TIGR02824 132 FQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGS---DEKCAACEALGAD 186 (325)
T ss_pred HHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCCc
Confidence 345667777777777777899999999999999886655332 3444455666653
No 190
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=70.20 E-value=44 Score=25.69 Aligned_cols=53 Identities=30% Similarity=0.309 Sum_probs=37.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC----HHHHHHHHHcCCEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS----LERRIILRAFGAELVLTD 76 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~----~~~~~~~~~~Ga~v~~~~ 76 (278)
..||+..++.-|+++|..-.+.|-..++++..+.. ......++..|.++..+.
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~ 58 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIE 58 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccc
Confidence 46888899999999999988887766666655422 223345566777776665
No 191
>PRK08628 short chain dehydrogenase; Provisional
Probab=70.11 E-value=46 Score=27.85 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=37.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 76 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~ 76 (278)
..+|+..+|-.|.++|..-...|.+++++............++..|.++..+.
T Consensus 9 ~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~ 61 (258)
T PRK08628 9 VVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQ 61 (258)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEE
Confidence 67888888999999999988999998777544322233455566677665554
No 192
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=70.09 E-value=34 Score=30.88 Aligned_cols=54 Identities=19% Similarity=0.268 Sum_probs=38.6
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 71 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~ 71 (278)
+.+.+++|.+.+|. .+|..|.+++..++.+|.+-++++.. ...+++.++.+|++
T Consensus 184 ~~~~~~~g~~VlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~--~~~~~~~a~~lGa~ 237 (373)
T cd08299 184 NTAKVTPGSTCAVF-GLGGVGLSAIMGCKAAGASRIIAVDI--NKDKFAKAKELGAT 237 (373)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCc
Confidence 45667787666665 67999999999999999843333322 35677777888884
No 193
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=70.05 E-value=46 Score=27.94 Aligned_cols=70 Identities=14% Similarity=0.113 Sum_probs=44.8
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAK 94 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 94 (278)
..||+..++--|.++|......|.+++++-... .+.....++..|.++..+.-+ .+.++..+...+..++
T Consensus 10 ~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12481 10 VAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE-APETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEV 80 (251)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEecCch-HHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 679999999999999999999999987764432 233345556677776544321 2334444444444443
No 194
>PRK05854 short chain dehydrogenase; Provisional
Probab=69.89 E-value=57 Score=28.59 Aligned_cols=31 Identities=26% Similarity=0.350 Sum_probs=24.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 54 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p 54 (278)
..|||..++--|.++|..-.+.|.+++++..
T Consensus 16 ~~lITGas~GIG~~~a~~La~~G~~Vil~~R 46 (313)
T PRK05854 16 RAVVTGASDGLGLGLARRLAAAGAEVILPVR 46 (313)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 6788888888888888888888988776654
No 195
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=69.73 E-value=29 Score=28.98 Aligned_cols=52 Identities=15% Similarity=-0.033 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 023695 4 KIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 55 (278)
Q Consensus 4 R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~ 55 (278)
|+..+.+..+.++-.....+.+++....||-|+.+|......|.+.+.+...
T Consensus 4 ~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~ 55 (217)
T cd05211 4 YGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDP 55 (217)
T ss_pred hHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 5677777777655333444467888999999999999999999888877654
No 196
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=69.68 E-value=30 Score=28.13 Aligned_cols=63 Identities=17% Similarity=0.241 Sum_probs=38.7
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKT 95 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 95 (278)
+.|.-.|||-.|.++|-.+...|-.++++......+. -.+.+++.+.. .++..+...+...+.
T Consensus 21 R~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~------p~~~~~i~v~s---a~em~~~~~~~~~~~ 83 (185)
T PF04127_consen 21 RFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPP------PPGVKVIRVES---AEEMLEAVKELLPSA 83 (185)
T ss_dssp EEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----------TTEEEEE-SS---HHHHHHHHHHHGGGG
T ss_pred eEecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccc------cccceEEEecc---hhhhhhhhccccCcc
Confidence 4455569999999999999999999999986632111 24677777763 455555555554443
No 197
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=69.58 E-value=71 Score=27.29 Aligned_cols=52 Identities=29% Similarity=0.337 Sum_probs=36.5
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023695 17 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 71 (278)
Q Consensus 17 g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~ 71 (278)
+.+.+|...+|...+|..|.+++..++..|.+.++..+. ..+.+.++.+|++
T Consensus 140 ~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~ 191 (325)
T cd08253 140 AGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASS---AEGAELVRQAGAD 191 (325)
T ss_pred hCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCCC
Confidence 556677677777777899999999999999886555443 3455555666653
No 198
>PRK07109 short chain dehydrogenase; Provisional
Probab=69.41 E-value=35 Score=30.32 Aligned_cols=72 Identities=15% Similarity=0.101 Sum_probs=45.3
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAKT 95 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~-~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 95 (278)
..+|+..+|--|.++|......|.+++++..... .....+.++..|.++..+..+ .+.++..+.+.+..++.
T Consensus 10 ~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 10 VVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence 6788888999999999999999998777654321 122344566778887655432 23333334444444443
No 199
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=69.28 E-value=33 Score=29.87 Aligned_cols=38 Identities=32% Similarity=0.369 Sum_probs=30.1
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIIT 52 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv 52 (278)
+...++++++.+|...+|..|.+++..|+..|.+++++
T Consensus 156 ~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~ 193 (325)
T cd08264 156 KTAGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAV 193 (325)
T ss_pred HhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEE
Confidence 34567788776776667999999999999999986654
No 200
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=69.24 E-value=51 Score=28.79 Aligned_cols=63 Identities=17% Similarity=0.055 Sum_probs=36.7
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023695 6 GYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 71 (278)
Q Consensus 6 a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~ 71 (278)
++..+..+++.-...-.++++..-..|+.|+++|...+.+|.+++++-+. ..+......+|.+
T Consensus 134 Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~---~~~~~~~~~~g~~ 196 (287)
T TIGR02853 134 AEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARS---SADLARITEMGLI 196 (287)
T ss_pred HHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHCCCe
Confidence 34445555543211112245666777889999999998888876655332 2344444555654
No 201
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=69.12 E-value=62 Score=26.89 Aligned_cols=52 Identities=31% Similarity=0.497 Sum_probs=35.4
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023695 17 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 72 (278)
Q Consensus 17 g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v 72 (278)
+.++++.+.++...++ .|++++..++..|.+.+++.+. +.+.+.++.+|++.
T Consensus 130 ~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~ 181 (271)
T cd05188 130 GVLKPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRS---DEKLELAKELGADH 181 (271)
T ss_pred cCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHhCCce
Confidence 4446666666666666 9999999999999776666443 35566666666543
No 202
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=69.11 E-value=65 Score=28.86 Aligned_cols=55 Identities=22% Similarity=0.250 Sum_probs=38.6
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 16 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 16 ~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
...++++++.+|. .+|..|.+++..|+.+|.+.++.+.. ++.|...++.+|++.+
T Consensus 181 ~~~~~~g~~vlI~-g~g~vG~~~~~la~~~G~~~v~~~~~--~~~k~~~~~~~g~~~~ 235 (365)
T cd08278 181 VLKPRPGSSIAVF-GAGAVGLAAVMAAKIAGCTTIIAVDI--VDSRLELAKELGATHV 235 (365)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCcEE
Confidence 3556777666665 56899999999999999874444433 3567777788887533
No 203
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=69.10 E-value=40 Score=28.95 Aligned_cols=51 Identities=27% Similarity=0.403 Sum_probs=37.7
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023695 17 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 71 (278)
Q Consensus 17 g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~ 71 (278)
+.++++...+|...+|..|.+++..|+..|.+.+++.+. .+.+.++.+|++
T Consensus 139 ~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~----~~~~~~~~~g~~ 189 (319)
T cd08267 139 GKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST----RNAELVRSLGAD 189 (319)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH----HHHHHHHHcCCC
Confidence 446677666666667999999999999999986666532 556666777763
No 204
>PRK12828 short chain dehydrogenase; Provisional
Probab=69.03 E-value=56 Score=26.70 Aligned_cols=55 Identities=18% Similarity=0.017 Sum_probs=39.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEeCC
Q 023695 23 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDP 77 (278)
Q Consensus 23 ~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~~ 77 (278)
.+.+|+.++|--|.+++..-.+.|.+++++...... ......+...+.+++..+-
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~ 63 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDL 63 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeec
Confidence 367899999999999999888889997766653221 2233445566777777664
No 205
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=68.98 E-value=50 Score=29.14 Aligned_cols=57 Identities=21% Similarity=0.253 Sum_probs=39.2
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 14 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 14 ~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
.+.+.++++.+.+|. .+|-.|.+++..|+.+|.+.++++.. ++.+...++.+|++-+
T Consensus 155 ~~~~~~~~g~~vlI~-g~g~vG~~a~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~~v 211 (343)
T cd05285 155 CRRAGVRPGDTVLVF-GAGPIGLLTAAVAKAFGATKVVVTDI--DPSRLEFAKELGATHT 211 (343)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCcEE
Confidence 456778888777775 46778999999999999884333322 2456666677777543
No 206
>PRK08589 short chain dehydrogenase; Validated
Probab=68.87 E-value=39 Score=28.79 Aligned_cols=71 Identities=15% Similarity=0.043 Sum_probs=43.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAK 94 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 94 (278)
..||+..+|--|.++|..-...|.+++++-...........++..|.++..+..+ .+.+.......++.++
T Consensus 8 ~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (272)
T PRK08589 8 VAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQ 79 (272)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHH
Confidence 6788888899999999998889998887755421222344555667655444321 1233334444444444
No 207
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=68.63 E-value=67 Score=29.73 Aligned_cols=72 Identities=13% Similarity=0.150 Sum_probs=45.8
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHh
Q 023695 22 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAK 94 (278)
Q Consensus 22 g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~ 94 (278)
+...+|+..+|.-|.++|....+.|.+++++-.+...+......+..+.+.+.++-. +.+...+......++
T Consensus 210 g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~-~~~~~~~~~~~~~~~ 281 (450)
T PRK08261 210 GKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDIT-APDAPARIAEHLAER 281 (450)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCC-CHHHHHHHHHHHHHh
Confidence 446788888899999999999999998777654332233333445567777777753 333333333444333
No 208
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=68.63 E-value=41 Score=30.29 Aligned_cols=55 Identities=20% Similarity=0.252 Sum_probs=39.1
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 72 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v 72 (278)
+...+++|...+| ...|..|.+++..++.+|.+.++++ +.+..|.+.++.+|+..
T Consensus 170 ~~~~~~~g~~vlI-~g~g~vg~~~~~~a~~~G~~~vi~~--~~~~~~~~~~~~~g~~~ 224 (375)
T cd08282 170 ELAGVQPGDTVAV-FGAGPVGLMAAYSAILRGASRVYVV--DHVPERLDLAESIGAIP 224 (375)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCeE
Confidence 4455677766666 5668999999999999997534333 33567788888888853
No 209
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=68.55 E-value=39 Score=29.80 Aligned_cols=50 Identities=28% Similarity=0.349 Sum_probs=34.9
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023695 20 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 72 (278)
Q Consensus 20 ~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v 72 (278)
+++.+.+|.+ +|..|.+++..++.+|.+.+++. ..+..|....+.+|++-
T Consensus 162 ~~g~~vlV~g-~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~ 211 (341)
T cd05281 162 VSGKSVLITG-CGPIGLMAIAVAKAAGASLVIAS--DPNPYRLELAKKMGADV 211 (341)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCcce
Confidence 5565666654 68899999999999998544444 33567777777788743
No 210
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=68.46 E-value=48 Score=24.90 Aligned_cols=97 Identities=14% Similarity=0.125 Sum_probs=49.5
Q ss_pred HHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhc
Q 023695 38 LAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYET 116 (278)
Q Consensus 38 ~A~~a~~~G~~~~vv~p~~~-~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 116 (278)
++...+..+.+..|+..... ...........+.+++.-.+ .++.+++..+.+.+.+......+-..+-|.... -+-
T Consensus 2 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Q~g-~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~-~~l- 78 (122)
T PF09837_consen 2 LAALAQADGADVVLAYTPDGDHAAFRQLWLPSGFSFFPQQG-GDLGERMANAFQQAARGYEPVVLIGSDCPDLTP-DDL- 78 (122)
T ss_dssp ------TSSSEEEEEE----TTHHHHHHHH-TTSEEEE--S-SSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--H-HHH-
T ss_pred ccccccCCCcCEEEEEcCCccHHHHhccccCCCCEEeecCC-CCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCH-HHH-
Confidence 34556677888888775443 33333335566777776655 478888888866664332455666667776532 222
Q ss_pred hHHHHHhhhCCCCCEEEEecCCCc
Q 023695 117 TGPELWKGSGGRIDALVSGIGTGG 140 (278)
Q Consensus 117 ~~~EI~~ql~~~~d~iv~~vG~Gg 140 (278)
.+.++.| ...|.|+.|+-=||
T Consensus 79 --~~A~~~L-~~~d~VlgPa~DGG 99 (122)
T PF09837_consen 79 --EQAFEAL-QRHDVVLGPAEDGG 99 (122)
T ss_dssp --HHHHHHT-TT-SEEEEEBTTSS
T ss_pred --HHHHHHh-ccCCEEEeeccCCC
Confidence 2334445 34599999998776
No 211
>PRK08226 short chain dehydrogenase; Provisional
Probab=68.42 E-value=45 Score=28.02 Aligned_cols=53 Identities=19% Similarity=0.046 Sum_probs=35.7
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 76 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~ 76 (278)
+.+|+..+|.-|.++|......|.+++++-...........+...|.++..+.
T Consensus 8 ~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~ 60 (263)
T PRK08226 8 TALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVV 60 (263)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEE
Confidence 67888899999999999999999987666443211222334444566654443
No 212
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=68.21 E-value=75 Score=27.03 Aligned_cols=53 Identities=32% Similarity=0.419 Sum_probs=37.2
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023695 16 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 71 (278)
Q Consensus 16 ~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~ 71 (278)
.+.+.++...+|...+|..|.+++..++.+|.+.+++.. +..+.+.++.+|++
T Consensus 131 ~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~ 183 (320)
T cd05286 131 TYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVS---SEEKAELARAAGAD 183 (320)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHCCCC
Confidence 356677766666666789999999999999987655432 34556666667763
No 213
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=67.97 E-value=58 Score=28.59 Aligned_cols=46 Identities=15% Similarity=0.089 Sum_probs=31.5
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 25 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
.+..-..|+.|++++..++.+|.+++++-+. ..+....+.+|++.+
T Consensus 154 kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~---~~~~~~~~~~G~~~~ 199 (296)
T PRK08306 154 NVLVLGFGRTGMTLARTLKALGANVTVGARK---SAHLARITEMGLSPF 199 (296)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHcCCeee
Confidence 4555667888888888888888866666333 344566667777643
No 214
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=67.61 E-value=40 Score=29.45 Aligned_cols=48 Identities=23% Similarity=0.201 Sum_probs=34.3
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHc-CCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023695 22 GESVLIEPTSGNTGIGLAFMAAAK-QYRLIITMPASMSLERRIILRAFGAEL 72 (278)
Q Consensus 22 g~~~vv~assGN~g~a~A~~a~~~-G~~~~vv~p~~~~~~~~~~~~~~Ga~v 72 (278)
|++.+|...+|..|.+++..|+.+ |.+++++.+. ..+.+.++.+|++-
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~---~~~~~~l~~~g~~~ 197 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASR---PESQEWVLELGAHH 197 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCc---HHHHHHHHHcCCCE
Confidence 656666666789999999899987 8886665433 35666667778743
No 215
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=67.57 E-value=24 Score=27.94 Aligned_cols=50 Identities=22% Similarity=0.272 Sum_probs=40.5
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 25 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
.++...+||-|...+..+..+|.+.+++ +....+++..+..++..+.++.
T Consensus 22 ~vvv~G~G~vg~gA~~~~~~lGa~v~~~---d~~~~~~~~~~~~~~~~i~~~~ 71 (168)
T PF01262_consen 22 KVVVTGAGRVGQGAAEIAKGLGAEVVVP---DERPERLRQLESLGAYFIEVDY 71 (168)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT-EEEEE---ESSHHHHHHHHHTTTEESEETT
T ss_pred EEEEECCCHHHHHHHHHHhHCCCEEEec---cCCHHHHHhhhcccCceEEEcc
Confidence 5777889999999999999999997776 3456778888899998888753
No 216
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=67.47 E-value=53 Score=26.55 Aligned_cols=50 Identities=16% Similarity=0.056 Sum_probs=32.7
Q ss_pred hhchHHHHHhhhCCCCCEEEEecC-CCccHHHHHHHHHhhCCCcEEEEEecCCC
Q 023695 114 YETTGPELWKGSGGRIDALVSGIG-TGGTITGAGKFLKEKNPNIKLYGIEPTES 166 (278)
Q Consensus 114 ~~t~~~EI~~ql~~~~d~iv~~vG-~Gg~~aGi~~~~k~~~~~~~vigV~~~~~ 166 (278)
|...+.|+-+++. +-++.++.-| ..|++..++++.++.+ -+++||-|..-
T Consensus 17 ~~~~A~~lG~~la-~~g~~lV~GGg~~GlM~a~a~ga~~~g--G~viGi~p~~l 67 (178)
T TIGR00730 17 YKELAAELGAYLA-GQGWGLVYGGGRVGLMGAIADAAMENG--GTAVGVNPSGL 67 (178)
T ss_pred HHHHHHHHHHHHH-HCCCEEEECCChHhHHHHHHHHHHhcC--CeEEEecchhh
Confidence 4455566655552 3355455544 4789999999988755 57899987653
No 217
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=67.39 E-value=45 Score=29.39 Aligned_cols=52 Identities=17% Similarity=0.135 Sum_probs=37.1
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 19 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 19 l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
+++|.+.+|. ..|..|.+++..++.+|++++++.+. ..+.+.++.+|++-++
T Consensus 167 ~~~g~~vlV~-g~g~vG~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~~vi 218 (337)
T cd05283 167 VGPGKRVGVV-GIGGLGHLAVKFAKALGAEVTAFSRS---PSKKEDALKLGADEFI 218 (337)
T ss_pred CCCCCEEEEE-CCcHHHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHcCCcEEe
Confidence 6777666665 46899999999999999976555333 3566667778875443
No 218
>PRK06348 aspartate aminotransferase; Provisional
Probab=67.08 E-value=69 Score=28.93 Aligned_cols=52 Identities=8% Similarity=0.102 Sum_probs=35.7
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 76 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~ 76 (278)
+.|+..+++.++..++..+-. +-.-.|++|...-..-...++.+|++++.++
T Consensus 90 ~~i~it~G~~~al~~~~~~~~-~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~ 141 (384)
T PRK06348 90 NEIMATVGACHGMYLALQSIL-DPGDEVIIHEPYFTPYKDQIEMVGGKPIILE 141 (384)
T ss_pred hhEEEcCChHHHHHHHHHHhc-CCCCEEEEeCCCCcchHHHHHHcCCEEEEec
Confidence 347777888888877766542 2223566666555556777788999998886
No 219
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=67.08 E-value=35 Score=30.76 Aligned_cols=53 Identities=11% Similarity=0.009 Sum_probs=37.2
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 25 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
.|+.++++..++.++..+....-+-.|++|.-+-..-...++.+|++++.++.
T Consensus 93 ~I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~ 145 (374)
T PRK02610 93 NISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGR 145 (374)
T ss_pred HEEEcCChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecC
Confidence 47777777888876665544332335677776666777888999999999874
No 220
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=66.98 E-value=56 Score=28.66 Aligned_cols=55 Identities=29% Similarity=0.396 Sum_probs=40.2
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023695 14 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 71 (278)
Q Consensus 14 ~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~ 71 (278)
...+.+++|...+|.+ +|-.|.++...++.+|.+.++.... ++.+...++.+|++
T Consensus 154 ~~~~~~~~g~~VlI~g-~g~vg~~~~~la~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 208 (341)
T cd08262 154 VRRARLTPGEVALVIG-CGPIGLAVIAALKARGVGPIVASDF--SPERRALALAMGAD 208 (341)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCc
Confidence 3456677876666664 6889999999999999876555433 46777777888874
No 221
>PRK07550 hypothetical protein; Provisional
Probab=66.97 E-value=87 Score=28.25 Aligned_cols=53 Identities=11% Similarity=0.082 Sum_probs=36.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
+.|+..++++.+..++..+- .+-.-.|++|.-.-......++..|++++.++.
T Consensus 91 ~~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~ 143 (386)
T PRK07550 91 EQVHITSGCNQAFWAAMVTL-AGAGDEVILPLPWYFNHKMWLDMLGIRPVYLPC 143 (386)
T ss_pred ceEEEecCcHHHHHHHHHHh-cCCCCEEEEcCCCCcchHHHHHhcCCEEEEEec
Confidence 34676777788877666553 344456777765555556677889999999875
No 222
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=66.86 E-value=76 Score=26.58 Aligned_cols=70 Identities=14% Similarity=0.142 Sum_probs=44.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAK 94 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 94 (278)
..+|+..+|.-|.++|..-...|.+++++-. .......+.++..+.++..+..+ .+.++..+...+..++
T Consensus 12 ~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (253)
T PRK08993 12 VAVVTGCDTGLGQGMALGLAEAGCDIVGINI-VEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAE 82 (253)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEecC-cchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 6799999999999999999999998776532 22344455566667666554422 2333333444444333
No 223
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=66.80 E-value=18 Score=26.77 Aligned_cols=82 Identities=16% Similarity=0.285 Sum_probs=46.8
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCC-CCCEEEEecCCCc
Q 023695 62 RIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG-RIDALVSGIGTGG 140 (278)
Q Consensus 62 ~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~-~~d~iv~~vG~Gg 140 (278)
++..+.+|++|+.+++. +...+. +++..-..+++.. +.. ...+|.+..++ .+|.+|-++|++.
T Consensus 7 ~q~ak~~G~~vi~~~~~---~~k~~~----~~~~Ga~~~~~~~-~~~--------~~~~i~~~~~~~~~d~vid~~g~~~ 70 (130)
T PF00107_consen 7 IQLAKAMGAKVIATDRS---EEKLEL----AKELGADHVIDYS-DDD--------FVEQIRELTGGRGVDVVIDCVGSGD 70 (130)
T ss_dssp HHHHHHTTSEEEEEESS---HHHHHH----HHHTTESEEEETT-TSS--------HHHHHHHHTTTSSEEEEEESSSSHH
T ss_pred HHHHHHcCCEEEEEECC---HHHHHH----HHhhccccccccc-ccc--------cccccccccccccceEEEEecCcHH
Confidence 56778999999998862 333333 3444212233222 211 34455554443 6999999999876
Q ss_pred cHHHHHHHHHhhCCCcEEEEEe
Q 023695 141 TITGAGKFLKEKNPNIKLYGIE 162 (278)
Q Consensus 141 ~~aGi~~~~k~~~~~~~vigV~ 162 (278)
++.- +++...+.-+++-+-
T Consensus 71 ~~~~---~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 71 TLQE---AIKLLRPGGRIVVVG 89 (130)
T ss_dssp HHHH---HHHHEEEEEEEEEES
T ss_pred HHHH---HHHHhccCCEEEEEE
Confidence 5544 444444444555554
No 224
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=66.49 E-value=67 Score=26.61 Aligned_cols=70 Identities=11% Similarity=0.149 Sum_probs=43.6
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAK 94 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 94 (278)
+.+|+..+|.-|.++|......|..++++-... .......++.++.++..+..+ .+.++.....++..++
T Consensus 7 ~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (248)
T TIGR01832 7 VALVTGANTGLGQGIAVGLAEAGADIVGAGRSE-PSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEE 77 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEcCch-HHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 678888889999999999999999877765432 233345556667665544422 1233333344444443
No 225
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=66.44 E-value=62 Score=27.01 Aligned_cols=53 Identities=9% Similarity=0.028 Sum_probs=38.3
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTD 76 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~-~~~~~~~~~~~Ga~v~~~~ 76 (278)
..+|+..+|.-|.+++..-...|.+++++..... .......++..|.++..+.
T Consensus 9 ~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (262)
T PRK13394 9 TAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVA 62 (262)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEE
Confidence 6899999999999999999999998776654321 1233445566788776544
No 226
>PRK06197 short chain dehydrogenase; Provisional
Probab=66.38 E-value=74 Score=27.59 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=25.8
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 55 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~ 55 (278)
..+|+.++|--|.++|..-...|.+++++...
T Consensus 18 ~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~ 49 (306)
T PRK06197 18 VAVVTGANTGLGYETAAALAAKGAHVVLAVRN 49 (306)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 67888888889999998888889887776543
No 227
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=66.26 E-value=57 Score=28.73 Aligned_cols=52 Identities=23% Similarity=0.464 Sum_probs=36.5
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcC-CeEEEEeCCCCCHHHHHHHHHcCCE
Q 023695 16 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQ-YRLIITMPASMSLERRIILRAFGAE 71 (278)
Q Consensus 16 ~g~l~~g~~~vv~assGN~g~a~A~~a~~~G-~~~~vv~p~~~~~~~~~~~~~~Ga~ 71 (278)
...+.++.+.+|. .+|..|.+++..++.+| .++++ + +.++.+...++.+|++
T Consensus 161 ~~~~~~g~~vlI~-g~g~~g~~~~~~a~~~G~~~v~~-~--~~~~~~~~~~~~~g~~ 213 (345)
T cd08286 161 NGKVKPGDTVAIV-GAGPVGLAALLTAQLYSPSKIIM-V--DLDDNRLEVAKKLGAT 213 (345)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEE-E--cCCHHHHHHHHHhCCC
Confidence 3456777676775 56999999999999999 55444 3 2245667777778873
No 228
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=65.85 E-value=35 Score=32.50 Aligned_cols=50 Identities=16% Similarity=0.093 Sum_probs=40.3
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 25 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
.++.-..|..|++.+..++.+|..++++ +....+++..+.+|++.+.++.
T Consensus 166 kVlViGaG~iGl~Aa~~ak~lGA~V~v~---d~~~~rle~a~~lGa~~v~v~~ 215 (511)
T TIGR00561 166 KVLVIGAGVAGLAAIGAANSLGAIVRAF---DTRPEVKEQVQSMGAEFLELDF 215 (511)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHcCCeEEeccc
Confidence 4666788999999999999999885555 3345678888999999977763
No 229
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=65.79 E-value=79 Score=28.30 Aligned_cols=54 Identities=19% Similarity=0.273 Sum_probs=39.6
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 71 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~ 71 (278)
+...+++|++.+|. .+|..|.+++..|+.+|.+.++.+.. +..+.+.++.+|++
T Consensus 177 ~~~~~~~g~~vlI~-g~g~vG~~a~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 230 (365)
T cd05279 177 NTAKVTPGSTCAVF-GLGGVGLSVIMGCKAAGASRIIAVDI--NKDKFEKAKQLGAT 230 (365)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCCC
Confidence 34567778776665 67999999999999999875554432 45677777888874
No 230
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=65.64 E-value=66 Score=28.32 Aligned_cols=51 Identities=25% Similarity=0.391 Sum_probs=36.4
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCC
Q 023695 16 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA 70 (278)
Q Consensus 16 ~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga 70 (278)
...+.++.+.+|.. +|..|.++...++.+|++++++.+. ..+.+.++.+|+
T Consensus 160 ~~~~~~~~~vlV~g-~g~vg~~~~~~a~~~G~~vi~~~~~---~~~~~~~~~~g~ 210 (345)
T cd08260 160 QARVKPGEWVAVHG-CGGVGLSAVMIASALGARVIAVDID---DDKLELARELGA 210 (345)
T ss_pred ccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHHhCC
Confidence 44566776666666 7899999999999999886655333 455666677776
No 231
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=65.37 E-value=81 Score=27.60 Aligned_cols=50 Identities=22% Similarity=0.245 Sum_probs=35.4
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHcC-CeEEEEeCCCCCHHHHHHHHHcCCE
Q 023695 18 LITPGESVLIEPTSGNTGIGLAFMAAAKQ-YRLIITMPASMSLERRIILRAFGAE 71 (278)
Q Consensus 18 ~l~~g~~~vv~assGN~g~a~A~~a~~~G-~~~~vv~p~~~~~~~~~~~~~~Ga~ 71 (278)
.+.++.+.+|.. +|..|.+++..|+.+| .+++++.+ ++.+.+.++.+|++
T Consensus 164 ~~~~~~~vlI~g-~~~vg~~~~~~a~~~g~~~v~~~~~---~~~~~~~~~~~g~~ 214 (340)
T cd05284 164 YLDPGSTVVVIG-VGGLGHIAVQILRALTPATVIAVDR---SEEALKLAERLGAD 214 (340)
T ss_pred cCCCCCEEEEEc-CcHHHHHHHHHHHHhCCCcEEEEeC---CHHHHHHHHHhCCc
Confidence 456666666665 6669999999999998 67665533 34567777888864
No 232
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=65.35 E-value=57 Score=28.65 Aligned_cols=54 Identities=24% Similarity=0.226 Sum_probs=36.4
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 71 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~ 71 (278)
..+.++++++.+|. .+|-.|.++...|+.+|...++.+ ..+..+...++.+|++
T Consensus 161 ~~~~~~~~~~VlI~-g~g~vg~~~iqlak~~g~~~v~~~--~~~~~~~~~~~~~g~~ 214 (347)
T cd05278 161 ELAGIKPGSTVAVI-GAGPVGLCAVAGARLLGAARIIAV--DSNPERLDLAKEAGAT 214 (347)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--eCCHHHHHHHHHhCCc
Confidence 34556777776664 468889898889999997434444 3345667777777754
No 233
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=65.24 E-value=72 Score=26.18 Aligned_cols=54 Identities=19% Similarity=0.170 Sum_probs=37.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEeCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDP 77 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~--~~~~~~~~~~Ga~v~~~~~ 77 (278)
+.+|+.++|..|.+++....+.|.+++++...... ......++..+.++..+..
T Consensus 7 ~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (248)
T PRK05557 7 VALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQG 62 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEc
Confidence 67888899999999999988889987666654322 1223345556777776643
No 234
>PRK06139 short chain dehydrogenase; Provisional
Probab=65.14 E-value=42 Score=29.84 Aligned_cols=53 Identities=25% Similarity=0.241 Sum_probs=37.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 76 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~ 76 (278)
..||+..+|--|+++|......|.+++++...... ....+.++..|.++..+.
T Consensus 9 ~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~ 62 (330)
T PRK06139 9 VVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVP 62 (330)
T ss_pred EEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEE
Confidence 67888888999999999999999997766543211 122345667788775543
No 235
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=65.12 E-value=1e+02 Score=27.51 Aligned_cols=54 Identities=24% Similarity=0.336 Sum_probs=36.7
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 71 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~ 71 (278)
+...++++++.+|. ..|..|.+++..|+.+|.+.++++.. +..+...++.+|++
T Consensus 176 ~~~~~~~g~~vLI~-g~g~vG~a~i~lak~~G~~~Vi~~~~--~~~~~~~~~~~g~~ 229 (363)
T cd08279 176 NTARVRPGDTVAVI-GCGGVGLNAIQGARIAGASRIIAVDP--VPEKLELARRFGAT 229 (363)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEcC--CHHHHHHHHHhCCe
Confidence 34556777776666 56889999999999999873333322 34556666777773
No 236
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=65.05 E-value=53 Score=27.85 Aligned_cols=122 Identities=11% Similarity=0.051 Sum_probs=65.9
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHc---CCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCCCCCCchh
Q 023695 35 GIGLAFMAAAKQYRLIITMPASMSLERRIILRAF---GAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPK 111 (278)
Q Consensus 35 g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~---Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 111 (278)
|.++|-+.+.+|+++.++-++..+...+..+..+ |..|....+... +....+.+.+..-....+..|.+-..
T Consensus 86 G~~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~~~~~---r~~l~~~L~~~G~~v~~~~~Y~~~~~-- 160 (248)
T COG1587 86 GEKTAEALRKLGIKVDFIPEDGDSEGLLEELPELLKGGKRVLILRGNGG---REVLEEKLEERGAEVREVEVYRTEPP-- 160 (248)
T ss_pred cHHHHHHHHHhCCCCCcCCCccchHHHHHHhhhhccCCCeEEEEcCCCc---hHHHHHHHHhCCCEEEEEeeeeecCC--
Confidence 5677888888888877765556666777777777 567766654322 12233344333223445555543322
Q ss_pred hhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCC----CcEEEEEecCC
Q 023695 112 IHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNP----NIKLYGIEPTE 165 (278)
Q Consensus 112 ~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~----~~~vigV~~~~ 165 (278)
.+. ...++.......+|.|+... +.+.-.+...++..+. +.+++++-|.-
T Consensus 161 -~~~-~~~~~~~~~~~~~d~v~ftS--~~~v~~~~~~~~~~~~~~~~~~~v~~IG~~T 214 (248)
T COG1587 161 -PLD-EATLIELLKLGEVDAVVFTS--SSAVRALLALAPESGIEFLERKRVASIGPRT 214 (248)
T ss_pred -Ccc-HHHHHHHHHhCCCCEEEEeC--HHHHHHHHHHccccchhHhhCceEEEecHHH
Confidence 111 11111111125689998884 4455666666555443 35666664433
No 237
>PRK09242 tropinone reductase; Provisional
Probab=65.00 E-value=82 Score=26.32 Aligned_cols=31 Identities=19% Similarity=0.192 Sum_probs=25.7
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 54 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p 54 (278)
..+|+..+|.-|.++|......|.+++++..
T Consensus 11 ~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r 41 (257)
T PRK09242 11 TALITGASKGIGLAIAREFLGLGADVLIVAR 41 (257)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 6788888899999999998888988666644
No 238
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=64.79 E-value=31 Score=33.18 Aligned_cols=51 Identities=24% Similarity=0.130 Sum_probs=39.3
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
++++.+..|+.|+.+|-.-+..|.+++++-+ ++++.+.++.+|.+++.-+.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~---d~~~~~~~~~~g~~~i~GD~ 468 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIET---SRTRVDELRERGIRAVLGNA 468 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEEC---CHHHHHHHHHCCCeEEEcCC
Confidence 4688899999999999998888988877633 35667777777777766654
No 239
>PRK06114 short chain dehydrogenase; Provisional
Probab=64.65 E-value=83 Score=26.29 Aligned_cols=53 Identities=11% Similarity=0.051 Sum_probs=37.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTD 76 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~--~~~~~~~~~~Ga~v~~~~ 76 (278)
..||+.++|--|.++|..-...|.++++....... ....+.++..|.++..+.
T Consensus 10 ~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~ 64 (254)
T PRK06114 10 VAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIA 64 (254)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEE
Confidence 67898888999999999988999988776543321 223445566676665543
No 240
>PRK14031 glutamate dehydrogenase; Provisional
Probab=64.62 E-value=36 Score=31.82 Aligned_cols=51 Identities=10% Similarity=-0.101 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 023695 4 KIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 54 (278)
Q Consensus 4 R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p 54 (278)
|+..+.+..+.+..-+...+.+++.-..||-|..+|.....+|.+++++-+
T Consensus 209 ~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 209 YGNIYFLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred HHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 567777777765544455556788889999999999999999999988876
No 241
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=64.51 E-value=90 Score=27.53 Aligned_cols=50 Identities=22% Similarity=0.228 Sum_probs=34.2
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023695 19 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 71 (278)
Q Consensus 19 l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~ 71 (278)
+.++...+| ..+|..|.+++..|+.+|.+.++++. .+..+...++.+|++
T Consensus 173 ~~~~~~vlI-~g~g~vg~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~g~~ 222 (350)
T cd08240 173 LVADEPVVI-IGAGGLGLMALALLKALGPANIIVVD--IDEAKLEAAKAAGAD 222 (350)
T ss_pred CCCCCEEEE-ECCcHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHhCCc
Confidence 345544444 46789999999999999996554443 245677777777774
No 242
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=64.12 E-value=58 Score=27.56 Aligned_cols=51 Identities=25% Similarity=0.235 Sum_probs=36.7
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCe-EEEEeCCCCCHHHHHHHHHcC
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYR-LIITMPASMSLERRIILRAFG 69 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~-~~vv~p~~~~~~~~~~~~~~G 69 (278)
..+.++++++.+|. ..|..|.++...|+.+|.+ ++++ ..+..+...++.+|
T Consensus 91 ~~~~~~~g~~vlI~-g~g~vg~~~i~~a~~~g~~~vi~~---~~~~~~~~~~~~~g 142 (277)
T cd08255 91 RDAEPRLGERVAVV-GLGLVGLLAAQLAKAAGAREVVGV---DPDAARRELAEALG 142 (277)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEE---CCCHHHHHHHHHcC
Confidence 35667787766665 5789999999999999988 4443 22456666777777
No 243
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=63.73 E-value=46 Score=30.47 Aligned_cols=51 Identities=20% Similarity=0.181 Sum_probs=35.2
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCC--eEEEEeCCCCCHHHHHHHHHc
Q 023695 16 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQY--RLIITMPASMSLERRIILRAF 68 (278)
Q Consensus 16 ~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~--~~~vv~p~~~~~~~~~~~~~~ 68 (278)
...+++|++.+|...+|--|..+...|+.+|. ..++++ +.++.|++.++.+
T Consensus 170 ~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~--~~~~~r~~~a~~~ 222 (410)
T cd08238 170 RMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVT--DVNDERLARAQRL 222 (410)
T ss_pred hcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEE--cCCHHHHHHHHHh
Confidence 45677887767766679999999999999875 223332 3346677777775
No 244
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=63.67 E-value=59 Score=26.71 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=28.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 55 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~ 55 (278)
+.+|+.++|..|.+++......|.+++++...
T Consensus 7 ~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~ 38 (238)
T PRK05786 7 KVAIIGVSEGLGYAVAYFALKEGAQVCINSRN 38 (238)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 67899999999999999999999988877654
No 245
>PRK12937 short chain dehydrogenase; Provisional
Probab=63.57 E-value=82 Score=25.93 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=38.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEeCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDP 77 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~--~~~~~~~~~~Ga~v~~~~~ 77 (278)
..+|+..+|..|.++|..-...|.+++++.....+ ....+.++.++.++..+..
T Consensus 7 ~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (245)
T PRK12937 7 VAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQA 62 (245)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 67888899999999999999999988776544321 2234455667887776653
No 246
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=63.28 E-value=64 Score=26.97 Aligned_cols=53 Identities=17% Similarity=0.067 Sum_probs=36.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTD 76 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~-~~~~~~~~~~~Ga~v~~~~ 76 (278)
+.+|+..+|..|.++|......|.+++++-.... .......++..|.++..+.
T Consensus 12 ~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~ 65 (255)
T PRK07523 12 RALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALA 65 (255)
T ss_pred EEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEE
Confidence 6789899999999999999889998666543221 1122334555676666553
No 247
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=63.18 E-value=53 Score=26.24 Aligned_cols=71 Identities=18% Similarity=0.138 Sum_probs=43.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-----CCHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-----MSLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAK 94 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~-----~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 94 (278)
+.||+...|..|..+|..=...+-.-++++... .....++.++..|++|....-+ .+.++..+...++.++
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~ 78 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQR 78 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTT
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhc
Confidence 468888889999999988666665555555433 2345788889999999877532 2334344443444333
No 248
>PRK10490 sensor protein KdpD; Provisional
Probab=63.17 E-value=91 Score=32.04 Aligned_cols=107 Identities=10% Similarity=0.047 Sum_probs=60.6
Q ss_pred eEEEEeCCChHH----HHHHHHHHHcCCeEEEEe---CC--CCCH-------HHHHHHHHcCCEEEEeCCCCChHHHHHH
Q 023695 24 SVLIEPTSGNTG----IGLAFMAAAKQYRLIITM---PA--SMSL-------ERRIILRAFGAELVLTDPAKGMKGAVQK 87 (278)
Q Consensus 24 ~~vv~assGN~g----~a~A~~a~~~G~~~~vv~---p~--~~~~-------~~~~~~~~~Ga~v~~~~~~~~~~~~~~~ 87 (278)
+.+|+-|++-++ +..+..|.+++-+.+++. |. ..+. ..+++.+.+||+++.+.+. +.. +.
T Consensus 252 riLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~~lA~~lGa~~~~~~~~-dva---~~ 327 (895)
T PRK10490 252 AILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAILSALRLAQELGAETATLSDP-AEE---KA 327 (895)
T ss_pred eEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCC-CHH---HH
Confidence 456666665554 444566777887766553 21 1111 2345667899999888763 222 33
Q ss_pred HHHHHHhCC-CccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecC
Q 023695 88 AEEILAKTP-NAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIG 137 (278)
Q Consensus 88 a~~~~~~~~-~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG 137 (278)
..+++++.+ ....+.+...+. | ...+++...+.+.. +++|..++|..
T Consensus 328 i~~~A~~~~vt~IViG~s~~~~-~-~~~~s~~~~l~r~~-~~idi~iv~~~ 375 (895)
T PRK10490 328 VLRYAREHNLGKIIIGRRASRR-W-WRRESFADRLARLG-PDLDLVIVALD 375 (895)
T ss_pred HHHHHHHhCCCEEEECCCCCCC-C-ccCCCHHHHHHHhC-CCCCEEEEeCC
Confidence 345555542 233444432221 2 22357788888887 57888888643
No 249
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=63.00 E-value=1e+02 Score=26.75 Aligned_cols=55 Identities=29% Similarity=0.393 Sum_probs=38.6
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 16 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 16 ~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
.+.++++.+.++. .+|..|.+++..|+.+|.+++++.+ ++.+.+.++.+|++-+.
T Consensus 160 ~~~~~~~~~vli~-g~g~vG~~~~~la~~~G~~V~~~~~---s~~~~~~~~~~g~~~~~ 214 (338)
T cd08254 160 AGEVKPGETVLVI-GLGGLGLNAVQIAKAMGAAVIAVDI---KEEKLELAKELGADEVL 214 (338)
T ss_pred ccCCCCCCEEEEE-CCcHHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHhCCCEEE
Confidence 4557777666665 5688999999999999988554433 35666777778875433
No 250
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=62.92 E-value=51 Score=30.67 Aligned_cols=52 Identities=15% Similarity=0.093 Sum_probs=38.7
Q ss_pred EEEEeCC---ChHHHHHHHHHHHc-CCeEEEEeCCCC--CHHHHHHHHHcCCEEEEeC
Q 023695 25 VLIEPTS---GNTGIGLAFMAAAK-QYRLIITMPASM--SLERRIILRAFGAELVLTD 76 (278)
Q Consensus 25 ~vv~ass---GN~g~a~A~~a~~~-G~~~~vv~p~~~--~~~~~~~~~~~Ga~v~~~~ 76 (278)
+|+-... +|.+.|++..++.+ |++++++-|+.. +...++.++..|.++..++
T Consensus 243 kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~ 300 (429)
T PRK11891 243 HIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTD 300 (429)
T ss_pred EEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEc
Confidence 3444444 69999999996665 999999999864 3445566667788888776
No 251
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=62.83 E-value=36 Score=31.73 Aligned_cols=53 Identities=13% Similarity=0.033 Sum_probs=40.7
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-----CCHHHHHHHHHcCCEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-----MSLERRIILRAFGAELVLTD 76 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~-----~~~~~~~~~~~~Ga~v~~~~ 76 (278)
+.++.-.+||.|.-+|..+.++|.+++++...+ .....++.++..|.+++.-.
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~~~ 330 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHFLC 330 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEecc
Confidence 358888999999999999999999988887542 22344566778888877543
No 252
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.80 E-value=73 Score=27.77 Aligned_cols=54 Identities=19% Similarity=0.107 Sum_probs=38.5
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC--CHHHHHHHHHcCCEEEEeCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM--SLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~--~~~~~~~~~~~Ga~v~~~~~ 77 (278)
..||+..+|.-|.++|..-...|.++++.-.... .....+.++..|.+++.+..
T Consensus 14 ~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 69 (306)
T PRK07792 14 VAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAG 69 (306)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeC
Confidence 6788888999999999998889998776543221 12334566777888766653
No 253
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=62.64 E-value=67 Score=27.74 Aligned_cols=48 Identities=23% Similarity=0.277 Sum_probs=34.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 23 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 23 ~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
+..+|...+|..|.+++..|+.+|.+++++.+ +..+++.++.+|++-+
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~ 195 (325)
T cd05280 148 GPVLVTGATGGVGSIAVAILAKLGYTVVALTG---KEEQADYLKSLGASEV 195 (325)
T ss_pred CEEEEECCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCcEE
Confidence 35566666699999999999999998555433 3466777788887543
No 254
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=62.60 E-value=92 Score=27.07 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=23.1
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCC
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQY 47 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~ 47 (278)
+-+.++||.+.+|-+..|--|..+--.++..|-
T Consensus 140 e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a 172 (336)
T KOG1197|consen 140 EAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGA 172 (336)
T ss_pred HhcCCCCCCEEEEEeccccHHHHHHHHHHhcCc
Confidence 446788888878888888888776555544443
No 255
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=62.59 E-value=55 Score=28.90 Aligned_cols=48 Identities=25% Similarity=0.342 Sum_probs=36.1
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023695 20 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 71 (278)
Q Consensus 20 ~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~ 71 (278)
.++.+.+|...+|..|.+++..++.+|.+.+... . ..+.+.++.+|++
T Consensus 153 ~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~-~---~~~~~~~~~~g~~ 200 (339)
T cd08249 153 SKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTA-S---PKNFDLVKSLGAD 200 (339)
T ss_pred CCCCEEEEEcChhHHHHHHHHHHHHcCCeEEEEE-C---cccHHHHHhcCCC
Confidence 5666666666679999999999999999876654 2 2566677778874
No 256
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=62.51 E-value=57 Score=29.25 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=35.7
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 17 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 17 g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
+.+++|++.+| ..+|.-|.+++..|+.+|.+.+++.... ..+....+.+|++.++
T Consensus 179 ~~~~~g~~VlV-~G~G~vG~~avq~Ak~~Ga~vi~~~~~~--~~~~~~~~~~Ga~~vi 233 (360)
T PLN02586 179 GMTEPGKHLGV-AGLGGLGHVAVKIGKAFGLKVTVISSSS--NKEDEAINRLGADSFL 233 (360)
T ss_pred cccCCCCEEEE-ECCCHHHHHHHHHHHHCCCEEEEEeCCc--chhhhHHHhCCCcEEE
Confidence 44556655555 6678999999999999998755543332 2334455678885443
No 257
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=62.49 E-value=73 Score=27.25 Aligned_cols=50 Identities=30% Similarity=0.288 Sum_probs=37.6
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 21 PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 21 ~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
+++..++...+|..|.+++..|+.+|.+.+...+ +..+...++.+|+...
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~ 181 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVG---SPARAEGLRELGAAEV 181 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEE
Confidence 4656677777799999999999999998555533 3567788888888633
No 258
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=62.45 E-value=92 Score=26.02 Aligned_cols=31 Identities=16% Similarity=0.128 Sum_probs=26.3
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 54 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p 54 (278)
..||+..+|.-|.++|..-...|.+++++-.
T Consensus 4 ~ilItG~~~~IG~~la~~l~~~g~~vi~~~r 34 (259)
T PRK12384 4 VAVVIGGGQTLGAFLCHGLAEEGYRVAVADI 34 (259)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence 6789999999999999998888988776643
No 259
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=62.26 E-value=66 Score=27.28 Aligned_cols=119 Identities=12% Similarity=0.105 Sum_probs=61.6
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC-CCChH--HHHHHHHHHHHhCCCccccCCCC----CCCc
Q 023695 37 GLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP-AKGMK--GAVQKAEEILAKTPNAYMLQQFE----NPAN 109 (278)
Q Consensus 37 a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~-~~~~~--~~~~~a~~~~~~~~~~~~~~~~~----~~~~ 109 (278)
+++.+-++.|-|+.++ .-+.--.+++.+ +|.|-..+=. -.-.+ .....|.-.-++.++.++++-.. |...
T Consensus 22 nig~aLA~~GkKv~li-D~DiGLRNLDli--mGlE~RiVYd~vdVi~g~~~l~QALIkDKr~~nL~lLPAsQtrdKdalt 98 (272)
T COG2894 22 NIGTALAQLGKKVVLI-DFDIGLRNLDLI--MGLENRIVYDLVDVIEGEATLNQALIKDKRLENLFLLPASQTRDKDALT 98 (272)
T ss_pred HHHHHHHHcCCeEEEE-ecCcCchhhhhh--hcccceeeeeehhhhcCccchhhHhhccccCCceEecccccccCcccCC
Confidence 3333444677776655 555556667765 6775433210 00001 11122211112233455544332 2222
Q ss_pred hhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhh--CCCcEEEEEecCCCC
Q 023695 110 PKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEK--NPNIKLYGIEPTESP 167 (278)
Q Consensus 110 ~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~--~~~~~vigV~~~~~~ 167 (278)
.++...+-.|+.+ ..+|+|+|= ..+||=++|+.. .-+-.++.+.|+-|.
T Consensus 99 -~E~v~~vv~eL~~---~~fDyIi~D-----sPAGIE~G~~~A~~~Ad~AiVVtnPEvSs 149 (272)
T COG2894 99 -PEGVKKVVNELKA---MDFDYIIID-----SPAGIEQGFKNAVYFADEAIVVTNPEVSS 149 (272)
T ss_pred -HHHHHHHHHHHHh---cCCCEEEec-----CcchHHHHHHhhhhccceEEEEcCCCccc
Confidence 3565555445433 469999986 367899998864 345667777777764
No 260
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=62.15 E-value=54 Score=28.96 Aligned_cols=61 Identities=21% Similarity=0.224 Sum_probs=41.5
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHH-HHHcCCEEEEeC
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRII-LRAFGAELVLTD 76 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~--~~~~~~-~~~~Ga~v~~~~ 76 (278)
+.|.++ |.+..++.-.+|..+|++..++++|++++++.|+.-. ...++. .+..|.++...+
T Consensus 146 ~~g~l~-gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~ 209 (304)
T PRK00779 146 HRGSLK-GLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTH 209 (304)
T ss_pred HhCCcC-CcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEc
Confidence 346554 3343333344899999999999999999999998642 223332 466788887665
No 261
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=61.98 E-value=1.1e+02 Score=26.59 Aligned_cols=67 Identities=21% Similarity=0.258 Sum_probs=43.6
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHH-----HHcCCEEEEeCCC-CChHHHHHHHHHHHH
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIIL-----RAFGAELVLTDPA-KGMKGAVQKAEEILA 93 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~-----~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~ 93 (278)
+.|||..|+.-|.++|..-++.|.+++++-... .|+..+ +.+|.+|...+-+ .+.++..+...++..
T Consensus 8 ~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~---~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~ 80 (265)
T COG0300 8 TALITGASSGIGAELAKQLARRGYNLILVARRE---DKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKE 80 (265)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCcH---HHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHh
Confidence 679999999999999999999999999997654 333222 3456666554421 122334444444433
No 262
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=61.80 E-value=68 Score=27.04 Aligned_cols=71 Identities=15% Similarity=0.026 Sum_probs=43.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAK 94 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 94 (278)
..+|+..+|.-|.++|......|.+++++-..... ......++..|.+++.+.-+ .+.+...+...+..++
T Consensus 12 ~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (265)
T PRK07097 12 IALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKE 84 (265)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 67999999999999999999999987766332211 12233455567776555432 2333334444444443
No 263
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=61.80 E-value=93 Score=27.09 Aligned_cols=54 Identities=24% Similarity=0.271 Sum_probs=37.2
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 71 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~ 71 (278)
+...++++.+.+|. .+|..|.+++..|+.+|++.++++.. +..+...++.+|+.
T Consensus 153 ~~~~~~~g~~vlI~-g~g~vg~~~~~la~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 206 (334)
T cd08234 153 DLLGIKPGDSVLVF-GAGPIGLLLAQLLKLNGASRVTVAEP--NEEKLELAKKLGAT 206 (334)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHhCCe
Confidence 44566777666665 56889999999999999884443332 34566666777765
No 264
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=61.50 E-value=48 Score=29.82 Aligned_cols=53 Identities=15% Similarity=0.139 Sum_probs=39.6
Q ss_pred EEEEeCC---ChHHHHHHHH-HHHcCCeEEEEeCCCC--CHHHHHHHHHcCCEEEEeCC
Q 023695 25 VLIEPTS---GNTGIGLAFM-AAAKQYRLIITMPASM--SLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 25 ~vv~ass---GN~g~a~A~~-a~~~G~~~~vv~p~~~--~~~~~~~~~~~Ga~v~~~~~ 77 (278)
+|+-... +|.+.|++.. ++.+|++++++.|+.. +..-++.++..|.++..+..
T Consensus 161 kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d 219 (338)
T PRK08192 161 HIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQ 219 (338)
T ss_pred EEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcC
Confidence 4554555 6889999976 6677999999999864 45556667778988887763
No 265
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=61.42 E-value=54 Score=27.90 Aligned_cols=68 Identities=21% Similarity=0.242 Sum_probs=39.8
Q ss_pred HHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecC
Q 023695 63 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIG 137 (278)
Q Consensus 63 ~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG 137 (278)
+.+...||++.+.--. +....+.++++++. +..++-+.|-.. .+....+..+|-++. +++|.+|-+++
T Consensus 26 k~l~~~GAeL~fTy~~---e~l~krv~~la~~~-~s~~v~~cDV~~--d~~i~~~f~~i~~~~-g~lD~lVHsIa 93 (259)
T COG0623 26 KALAEQGAELAFTYQG---ERLEKRVEELAEEL-GSDLVLPCDVTN--DESIDALFATIKKKW-GKLDGLVHSIA 93 (259)
T ss_pred HHHHHcCCEEEEEecc---HHHHHHHHHHHhhc-cCCeEEecCCCC--HHHHHHHHHHHHHhh-CcccEEEEEec
Confidence 4566778888776532 24455667777766 344444443221 344555555665555 57888888765
No 266
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=61.32 E-value=25 Score=32.10 Aligned_cols=53 Identities=17% Similarity=0.281 Sum_probs=26.0
Q ss_pred EEEEeCCChHHHHHHHHHHHc-CCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 25 VLIEPTSGNTGIGLAFMAAAK-QYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~~~-G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
.++..+||..+.-.|...-.- |=++.++....-...-.+..+.||++|+.+..
T Consensus 58 ~~ll~gsGt~amEAav~sl~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~ 111 (383)
T COG0075 58 VVLLSGSGTLAMEAAVASLVEPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEV 111 (383)
T ss_pred EEEEcCCcHHHHHHHHHhccCCCCeEEEEeCChHHHHHHHHHHHhCCceEEEeC
Confidence 444445555554444433322 44555544444444445555666666665553
No 267
>PRK05826 pyruvate kinase; Provisional
Probab=61.31 E-value=1.3e+02 Score=28.30 Aligned_cols=124 Identities=11% Similarity=0.083 Sum_probs=70.5
Q ss_pred HHHHHHHcCCeEEEE-----------eCCCCCHHHHHHHHHcCCEEEEeCCCC----ChHHHHHHHHHHHHhCCCcccc-
Q 023695 38 LAFMAAAKQYRLIIT-----------MPASMSLERRIILRAFGAELVLTDPAK----GMKGAVQKAEEILAKTPNAYML- 101 (278)
Q Consensus 38 ~A~~a~~~G~~~~vv-----------~p~~~~~~~~~~~~~~Ga~v~~~~~~~----~~~~~~~~a~~~~~~~~~~~~~- 101 (278)
+...|++.|.++.+- .|..+.-..+...-..|++-+...+++ .-.++.+...+++++.+..++.
T Consensus 264 Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~ 343 (465)
T PRK05826 264 IIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVEAMARICKGAEKEFSIN 343 (465)
T ss_pred HHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCcCHHHHHHHHHHHHHHHHhccchh
Confidence 455688899988874 244434445666677899988887532 1234444444443322211110
Q ss_pred ---CCCCCC-CchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCC
Q 023695 102 ---QQFENP-ANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTES 166 (278)
Q Consensus 102 ---~~~~~~-~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~ 166 (278)
...... ..........+.++.++++ +.+.||+..-+|.+.--++ ...|.+.|+++.+...
T Consensus 344 ~~~~~~~~~~~~~~~~ia~aa~~~a~~l~-~a~~Ivv~T~sG~ta~~is----k~RP~~pI~~~t~~~~ 407 (465)
T PRK05826 344 LSKHRLDRQFDRIDEAIAMSAMYAANHLK-GVKAIVALTESGRTARLIS----RFRPGAPIFAVTRDEK 407 (465)
T ss_pred hhhhhccccccchHHHHHHHHHHHHHhcC-CCCEEEEECCCcHHHHHHH----hhCCCCCEEEEcCCHH
Confidence 110011 1112344455567777772 2678999988888665444 4468899999975543
No 268
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=60.99 E-value=95 Score=25.69 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=38.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEeC
Q 023695 23 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTD 76 (278)
Q Consensus 23 ~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~--~~~~~~~~~~Ga~v~~~~ 76 (278)
.+.+|+..+|.-|+++|..-...|.+++++...+.. +...+.++..|.++..+.
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVK 60 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 367898999999999999999999987765443322 122345566787776654
No 269
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=60.88 E-value=1.1e+02 Score=26.18 Aligned_cols=53 Identities=30% Similarity=0.504 Sum_probs=34.7
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023695 16 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 71 (278)
Q Consensus 16 ~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~ 71 (278)
...+.++...++...+|..|.+++..++..|.+.+++... ..+.+.++.+|++
T Consensus 134 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~ 186 (323)
T cd08241 134 RARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASS---EEKLALARALGAD 186 (323)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCC---HHHHHHHHHcCCc
Confidence 4556667666666666889999999999888875544332 3445555556653
No 270
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=60.69 E-value=40 Score=29.71 Aligned_cols=46 Identities=24% Similarity=0.283 Sum_probs=34.0
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023695 22 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 71 (278)
Q Consensus 22 g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~ 71 (278)
|.+.+|...+|..|.+++..|+.+|.++++.... .+...++.+|++
T Consensus 163 g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~----~~~~~~~~~g~~ 208 (350)
T cd08248 163 GKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST----DAIPLVKSLGAD 208 (350)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc----chHHHHHHhCCc
Confidence 6666666667999999999999999986655432 356677777764
No 271
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=60.68 E-value=1.1e+02 Score=26.41 Aligned_cols=52 Identities=31% Similarity=0.416 Sum_probs=34.7
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023695 17 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 72 (278)
Q Consensus 17 g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v 72 (278)
+.+++|...++. .+|..|.+++..|+..|.++++..+ +..+++.++.+|++-
T Consensus 156 ~~~~~g~~vli~-g~g~~g~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~ 207 (336)
T cd08276 156 GPLKPGDTVLVQ-GTGGVSLFALQFAKAAGARVIATSS---SDEKLERAKALGADH 207 (336)
T ss_pred cCCCCCCEEEEE-CCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCE
Confidence 456777554554 6788899999999999988555433 335566666666543
No 272
>PLN02527 aspartate carbamoyltransferase
Probab=60.66 E-value=1.1e+02 Score=27.01 Aligned_cols=59 Identities=19% Similarity=0.190 Sum_probs=41.0
Q ss_pred cCCCCCCCeEEEEeCC---ChHHHHHHHHHHHc-CCeEEEEeCCCC--CHHHHHHHHHcCCEEEEeC
Q 023695 16 KGLITPGESVLIEPTS---GNTGIGLAFMAAAK-QYRLIITMPASM--SLERRIILRAFGAELVLTD 76 (278)
Q Consensus 16 ~g~l~~g~~~vv~ass---GN~g~a~A~~a~~~-G~~~~vv~p~~~--~~~~~~~~~~~Ga~v~~~~ 76 (278)
.|.++ | .+|+-... +|.+++++.+++++ |+.++++.|+.. +...++.++..|.++..++
T Consensus 146 ~g~l~-g-~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 210 (306)
T PLN02527 146 IGRLD-G-IKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESS 210 (306)
T ss_pred hCCcC-C-CEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEc
Confidence 46543 3 23444444 36899999998887 999999999864 4455556666788877765
No 273
>PLN02342 ornithine carbamoyltransferase
Probab=60.60 E-value=58 Score=29.42 Aligned_cols=61 Identities=18% Similarity=0.250 Sum_probs=41.0
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC--CHHHHHHHHHcCC-EEEEeC
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM--SLERRIILRAFGA-ELVLTD 76 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~--~~~~~~~~~~~Ga-~v~~~~ 76 (278)
+.|.++ |.+..+..-..|.+++++.+++++|++++++.|+.- +...++.++..|. ++....
T Consensus 188 ~~G~l~-glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~ 251 (348)
T PLN02342 188 HIGRLE-GTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITN 251 (348)
T ss_pred HhCCcC-CCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEc
Confidence 346553 333333333368999999999999999999999864 3344555666674 666554
No 274
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=60.57 E-value=63 Score=28.33 Aligned_cols=58 Identities=22% Similarity=0.245 Sum_probs=39.6
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHcCCEEEE
Q 023695 17 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVL 74 (278)
Q Consensus 17 g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~-~~~~~~~~~~~Ga~v~~ 74 (278)
+.++++.+.+|...+|..|.+++..|+.+|.++++...... -..+.+.++.+|++-+.
T Consensus 142 ~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~ 200 (341)
T cd08290 142 VKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVL 200 (341)
T ss_pred cccCCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCEEE
Confidence 45667766555556699999999999999998777655321 12456666777876544
No 275
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=60.52 E-value=1.2e+02 Score=26.60 Aligned_cols=53 Identities=30% Similarity=0.371 Sum_probs=35.2
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCC
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA 70 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga 70 (278)
+...+++|+..+|. .+|-.|.+++..|+..|++.+++... +..+...++.+|+
T Consensus 159 ~~~~~~~g~~VlV~-g~g~vg~~~~~la~~~g~~~v~~~~~--s~~~~~~~~~~g~ 211 (343)
T cd08235 159 RKAGIKPGDTVLVI-GAGPIGLLHAMLAKASGARKVIVSDL--NEFRLEFAKKLGA 211 (343)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHhCC
Confidence 34467788776666 46789999999999999883333322 3455555566665
No 276
>PRK04148 hypothetical protein; Provisional
Probab=60.26 E-value=48 Score=25.51 Aligned_cols=49 Identities=12% Similarity=0.141 Sum_probs=38.1
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 25 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
.+++-..| +|.++|..-+..|.+++.+ +.++..++.++..+.+++..+-
T Consensus 19 kileIG~G-fG~~vA~~L~~~G~~ViaI---Di~~~aV~~a~~~~~~~v~dDl 67 (134)
T PRK04148 19 KIVELGIG-FYFKVAKKLKESGFDVIVI---DINEKAVEKAKKLGLNAFVDDL 67 (134)
T ss_pred EEEEEEec-CCHHHHHHHHHCCCEEEEE---ECCHHHHHHHHHhCCeEEECcC
Confidence 46777777 8887887777899988887 6666778888888988887763
No 277
>PRK09134 short chain dehydrogenase; Provisional
Probab=60.17 E-value=1e+02 Score=25.79 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=37.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH--HHHHHHHHcCCEEEEeC
Q 023695 23 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--ERRIILRAFGAELVLTD 76 (278)
Q Consensus 23 ~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~--~~~~~~~~~Ga~v~~~~ 76 (278)
.+.+|+..+|.-|.+++....+.|.+++++...+... .-...++..|.++..+.
T Consensus 10 k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (258)
T PRK09134 10 RAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQ 65 (258)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 3679999999999999999999999887765433211 12233444577776554
No 278
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=60.11 E-value=47 Score=27.63 Aligned_cols=64 Identities=17% Similarity=0.198 Sum_probs=38.5
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHh
Q 023695 30 TSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAK 94 (278)
Q Consensus 30 ssGN~g~a~A~~a~~~G~~~~vv~p~~~~--~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~ 94 (278)
+++.-|.++|..-.+.|.++++.-..... .......+.+|.+++.++-. +.+...+...+..++
T Consensus 4 ~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~-~~~~v~~~~~~~~~~ 69 (241)
T PF13561_consen 4 SSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDLS-DEESVEALFDEAVER 69 (241)
T ss_dssp STSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTT-SHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCc-chHHHHHHHHHHHhh
Confidence 45778888888888888887777554321 11234445678887666653 333333444444444
No 279
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=59.81 E-value=84 Score=26.67 Aligned_cols=53 Identities=17% Similarity=0.081 Sum_probs=36.7
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTD 76 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~-~~~~~~~~~~~Ga~v~~~~ 76 (278)
..+|+..+|..|.++|..-...|.+++++-.... .+.....++..|.++..+.
T Consensus 12 ~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 65 (278)
T PRK08277 12 VAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVK 65 (278)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 6788888899999999999999998777654321 1222344555677765544
No 280
>PRK09414 glutamate dehydrogenase; Provisional
Probab=59.59 E-value=41 Score=31.48 Aligned_cols=51 Identities=10% Similarity=-0.130 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 023695 4 KIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 54 (278)
Q Consensus 4 R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p 54 (278)
|+..+.+..+.+.......+.+|+....||-|..+|.....+|.+++.+..
T Consensus 213 ~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsD 263 (445)
T PRK09414 213 YGLVYFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSD 263 (445)
T ss_pred HHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 677777777776654454456788889999999999999888888877754
No 281
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=59.46 E-value=69 Score=27.34 Aligned_cols=67 Identities=10% Similarity=0.141 Sum_probs=36.5
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCcccc---CCCCCCCchhhhhhchHHHHHhhhC-CCCCEEEEecC
Q 023695 62 RIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYML---QQFENPANPKIHYETTGPELWKGSG-GRIDALVSGIG 137 (278)
Q Consensus 62 ~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~g~~t~~~EI~~ql~-~~~d~iv~~vG 137 (278)
++.....|..|.++++.. ....+.++.+.+++ +.-.+ ++|.++. - -.+|.+++. .+||.++++.|
T Consensus 98 l~~~~~~~~~v~llG~~~--~v~~~a~~~l~~~y-~l~i~g~~~Gyf~~~----e----~~~i~~~I~~s~~dil~VglG 166 (243)
T PRK03692 98 MARAGKEGTPVFLVGGKP--EVLAQTEAKLRTQW-NVNIVGSQDGYFTPE----Q----RQALFERIHASGAKIVTVAMG 166 (243)
T ss_pred HHHHHhcCCeEEEECCCH--HHHHHHHHHHHHHh-CCEEEEEeCCCCCHH----H----HHHHHHHHHhcCCCEEEEECC
Confidence 344456788999998632 33444455555555 33222 2332211 1 123455542 36999999998
Q ss_pred CC
Q 023695 138 TG 139 (278)
Q Consensus 138 ~G 139 (278)
+-
T Consensus 167 ~P 168 (243)
T PRK03692 167 SP 168 (243)
T ss_pred Cc
Confidence 74
No 282
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=59.39 E-value=30 Score=30.76 Aligned_cols=55 Identities=24% Similarity=0.402 Sum_probs=35.6
Q ss_pred EEEEeCCChHHHHHHHHHHHc----CCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC
Q 023695 25 VLIEPTSGNTGIGLAFMAAAK----QYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKT 95 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~~~----G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 95 (278)
.|++..+=|++-|+|+++... |=..++|+|.+. .+.....|.++.+.|.+++++.
T Consensus 80 illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH----------------~I~d~~af~~av~~A~~~A~~g 138 (333)
T COG0836 80 IILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDH----------------VIADEEAFLNAVKKAEKAAEEG 138 (333)
T ss_pred eEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCcc----------------eeccHHHHHHHHHHHHHHHHcC
Confidence 678888888888888776543 323566667652 2222224677888888888873
No 283
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=59.17 E-value=62 Score=25.80 Aligned_cols=88 Identities=15% Similarity=0.151 Sum_probs=52.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 103 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 103 (278)
+.++...-|+-|+++|...+.+|.+++|+ ++.+.+..+..+.|=++...+ + .+++ .+ +++.-
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~---e~DPi~alqA~~dGf~v~~~~------~-------a~~~-ad-i~vta 85 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVT---EIDPIRALQAAMDGFEVMTLE------E-------ALRD-AD-IFVTA 85 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE----SSHHHHHHHHHTT-EEE-HH------H-------HTTT--S-EEEE-
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEE---ECChHHHHHhhhcCcEecCHH------H-------HHhh-CC-EEEEC
Confidence 46888899999999999999999888887 445666666666777765321 1 1122 13 33322
Q ss_pred CCCCCchhhhhh-chHHHHHhhhCCCCCEEEEecCCC
Q 023695 104 FENPANPKIHYE-TTGPELWKGSGGRIDALVSGIGTG 139 (278)
Q Consensus 104 ~~~~~~~~~g~~-t~~~EI~~ql~~~~d~iv~~vG~G 139 (278)
.|.. .+-.|.++|++ .+.|++.+|.-
T Consensus 86 --------TG~~~vi~~e~~~~mk--dgail~n~Gh~ 112 (162)
T PF00670_consen 86 --------TGNKDVITGEHFRQMK--DGAILANAGHF 112 (162)
T ss_dssp --------SSSSSSB-HHHHHHS---TTEEEEESSSS
T ss_pred --------CCCccccCHHHHHHhc--CCeEEeccCcC
Confidence 2222 24567888883 47888888753
No 284
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=59.03 E-value=42 Score=24.53 Aligned_cols=94 Identities=22% Similarity=0.128 Sum_probs=52.2
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC--CCChHHHHHHHHHHHHhCCCccccCCCCCCCchhh
Q 023695 35 GIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP--AKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKI 112 (278)
Q Consensus 35 g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 112 (278)
...+|.+.++.|+++.++=.......-.+.++.+..+++.+.. ...+....+.++...+..|+...+ ..
T Consensus 17 l~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv---------~G 87 (121)
T PF02310_consen 17 LLYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIV---------VG 87 (121)
T ss_dssp HHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEE---------EE
T ss_pred HHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEE---------EE
Confidence 3455666777899888763333235556778888888887754 223445555555544444443332 22
Q ss_pred hh-hchHHH-HHhhhCCCCCEEEEecCC
Q 023695 113 HY-ETTGPE-LWKGSGGRIDALVSGIGT 138 (278)
Q Consensus 113 g~-~t~~~E-I~~ql~~~~d~iv~~vG~ 138 (278)
|. .+..+| +++.. ..+|+++..=|-
T Consensus 88 G~~~t~~~~~~l~~~-~~~D~vv~GegE 114 (121)
T PF02310_consen 88 GPHATADPEEILREY-PGIDYVVRGEGE 114 (121)
T ss_dssp ESSSGHHHHHHHHHH-HTSEEEEEETTS
T ss_pred CCchhcChHHHhccC-cCcceecCCChH
Confidence 32 244444 34432 247888776553
No 285
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=58.98 E-value=89 Score=25.84 Aligned_cols=54 Identities=11% Similarity=0.115 Sum_probs=37.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEeCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDP 77 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~--~~~~~~~~~~Ga~v~~~~~ 77 (278)
..+|+..+|--|.++|......|..+++....... +.....++..|.++..+.-
T Consensus 8 ~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 63 (247)
T PRK12935 8 VAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQA 63 (247)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEEC
Confidence 67888899999999999988899887765433211 1223455566777766543
No 286
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=58.87 E-value=36 Score=30.79 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=39.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
+.++..++|..+..++..+...+-.-.|++|..+-......++..|++++.++-
T Consensus 47 ~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~ 100 (375)
T PRK11706 47 AKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDI 100 (375)
T ss_pred CeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEec
Confidence 457777888888777665433333356778887777778888899999999874
No 287
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=58.85 E-value=1e+02 Score=26.69 Aligned_cols=83 Identities=17% Similarity=0.122 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEeCCCh----HHHH-HHHHHHHcCCeEEEEe--CCCCCHHHHHHHHHcCCEEEEeC
Q 023695 4 KIGYSMISDAEAKGLITPGESVLIEPTSGN----TGIG-LAFMAAAKQYRLIITM--PASMSLERRIILRAFGAELVLTD 76 (278)
Q Consensus 4 R~a~~~l~~a~~~g~l~~g~~~vv~assGN----~g~a-~A~~a~~~G~~~~vv~--p~~~~~~~~~~~~~~Ga~v~~~~ 76 (278)
...+.++....+++.-. -++..+--| .|.- ....|+..|++.+++. |...+......++.+|-+.++.-
T Consensus 79 ~~~lel~~~~r~~~~~~----Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lv 154 (265)
T COG0159 79 EDTLELVEEIRAKGVKV----PIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLV 154 (265)
T ss_pred HHHHHHHHHHHhcCCCC----CEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEe
Confidence 44566666666665422 244444444 2322 2447888999988884 55556667778888999887654
Q ss_pred CCCChHHHHHHHHH
Q 023695 77 PAKGMKGAVQKAEE 90 (278)
Q Consensus 77 ~~~~~~~~~~~a~~ 90 (278)
.+..-+++++...+
T Consensus 155 aPtt~~~rl~~i~~ 168 (265)
T COG0159 155 APTTPDERLKKIAE 168 (265)
T ss_pred CCCCCHHHHHHHHH
Confidence 43444555544443
No 288
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=58.65 E-value=36 Score=30.82 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=33.2
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 20 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 20 ~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
++|.+.+| ..+|..|.+++..|+.+|.+++++.+. ++.+.+.++.+|++.+
T Consensus 177 ~~g~~VlV-~G~G~vG~~avq~Ak~~Ga~Vi~~~~~--~~~~~~~a~~lGa~~~ 227 (375)
T PLN02178 177 ESGKRLGV-NGLGGLGHIAVKIGKAFGLRVTVISRS--SEKEREAIDRLGADSF 227 (375)
T ss_pred CCCCEEEE-EcccHHHHHHHHHHHHcCCeEEEEeCC--hHHhHHHHHhCCCcEE
Confidence 45544444 456889999999999999875554332 2334566677888543
No 289
>PRK06172 short chain dehydrogenase; Provisional
Probab=58.60 E-value=91 Score=25.92 Aligned_cols=53 Identities=15% Similarity=0.229 Sum_probs=36.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 76 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~ 76 (278)
+.+|+..+|.-|.++|......|.+++++...... +.....++..+.++..+.
T Consensus 9 ~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (253)
T PRK06172 9 VALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVA 62 (253)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 67888899999999999998999987766543211 222445566677665543
No 290
>PRK12939 short chain dehydrogenase; Provisional
Probab=58.57 E-value=89 Score=25.79 Aligned_cols=53 Identities=15% Similarity=0.068 Sum_probs=35.5
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTD 76 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~-~~~~~~~~~~~Ga~v~~~~ 76 (278)
..+|+..+|.-|.++|..-.+.|.+++++..... .......++..+.++..+.
T Consensus 9 ~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (250)
T PRK12939 9 RALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIA 62 (250)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 6788888999999999999899998766632211 1122334455676665544
No 291
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=58.05 E-value=52 Score=32.26 Aligned_cols=51 Identities=16% Similarity=0.206 Sum_probs=42.3
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
.+++.+..|..|+.+|..-...|++++++ +.++.+.+.++.+|.+++.-+.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvI---D~d~~~v~~~~~~g~~v~~GDa 451 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVL---DHDPDHIETLRKFGMKVFYGDA 451 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEE---ECCHHHHHHHHhcCCeEEEEeC
Confidence 46888999999999999999999998887 4456778888888888877765
No 292
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=57.97 E-value=88 Score=26.79 Aligned_cols=54 Identities=28% Similarity=0.399 Sum_probs=38.2
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 72 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v 72 (278)
+.+.++++...+|...+|..|.+++..++..|.++++..+ + .+.+.++.+|++-
T Consensus 138 ~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~-~~~~~~~~~g~~~ 191 (326)
T cd08272 138 DRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATAS---S-EKAAFARSLGADP 191 (326)
T ss_pred HhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEec---h-HHHHHHHHcCCCE
Confidence 4567777766666666788999999999999998665543 2 4555556677643
No 293
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=57.80 E-value=85 Score=28.40 Aligned_cols=53 Identities=11% Similarity=-0.024 Sum_probs=35.2
Q ss_pred EEEEeCCChHHHHHHHHHHH-cCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 25 VLIEPTSGNTGIGLAFMAAA-KQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~~-~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
.|+..+++..++.++..+-. -|=...|++|.-.-..-....+..|++++.++-
T Consensus 92 ~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g~~~~~v~~ 145 (393)
T TIGR03538 92 HVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEPYFLNC 145 (393)
T ss_pred eEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHhcCCeEEEeec
Confidence 46767777888877665432 243345777765544445567889999998874
No 294
>PRK08862 short chain dehydrogenase; Provisional
Probab=57.55 E-value=87 Score=25.96 Aligned_cols=52 Identities=13% Similarity=0.039 Sum_probs=34.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEe
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLT 75 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~ 75 (278)
..+|+..++.-|+++|......|.+++++-..... ....+.++..|.+++.+
T Consensus 7 ~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~ 59 (227)
T PRK08862 7 IILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSF 59 (227)
T ss_pred EEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEE
Confidence 67888888889999999999999987665332211 11233455556665443
No 295
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=57.46 E-value=86 Score=26.32 Aligned_cols=31 Identities=13% Similarity=0.127 Sum_probs=24.8
Q ss_pred eEEEEeCC--ChHHHHHHHHHHHcCCeEEEEeC
Q 023695 24 SVLIEPTS--GNTGIGLAFMAAAKQYRLIITMP 54 (278)
Q Consensus 24 ~~vv~ass--GN~g~a~A~~a~~~G~~~~vv~p 54 (278)
..+|+..+ +.-|.++|..-.+.|.++++.-.
T Consensus 9 ~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 9 KIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred EEEEeCCCCCCchHHHHHHHHHHCCCEEEEecC
Confidence 56777766 68999999999999998776643
No 296
>PRK06836 aspartate aminotransferase; Provisional
Probab=57.23 E-value=92 Score=28.27 Aligned_cols=52 Identities=15% Similarity=0.166 Sum_probs=33.3
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 25 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
.|+..++++.++.++..+- +.-.-.|++|......-...++.+|++++.++.
T Consensus 98 ~i~~t~G~~~al~~~~~~l-~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~ 149 (394)
T PRK06836 98 HIVMTCGAAGALNVALKAI-LNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPT 149 (394)
T ss_pred cEEEeCChHHHHHHHHHHh-cCCCCEEEEcCCCCccHHHHHHHcCCEEEEEec
Confidence 4666667777776665442 233345556654444456667889999999875
No 297
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=57.16 E-value=94 Score=24.65 Aligned_cols=52 Identities=27% Similarity=0.412 Sum_probs=28.2
Q ss_pred eEEEEeCCChHH---HHHHHHHHHcCCeEEEEe--CC-CCC---HHHHHHHHHcCCEEEEe
Q 023695 24 SVLIEPTSGNTG---IGLAFMAAAKQYRLIITM--PA-SMS---LERRIILRAFGAELVLT 75 (278)
Q Consensus 24 ~~vv~assGN~g---~a~A~~a~~~G~~~~vv~--p~-~~~---~~~~~~~~~~Ga~v~~~ 75 (278)
+.+|-+++||.| .++|..-+..|+++++++ |. ..+ ...++.++.+|..++..
T Consensus 27 ~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 87 (169)
T PF03853_consen 27 RVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIEL 87 (169)
T ss_dssp EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESS
T ss_pred eEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeec
Confidence 567777777643 455555666899988854 22 222 23344555556555443
No 298
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=57.03 E-value=92 Score=25.73 Aligned_cols=53 Identities=8% Similarity=0.177 Sum_probs=37.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTD 76 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~--~~~~~~~~~~Ga~v~~~~ 76 (278)
..+|+..+|.-|.++|..-...|.+++++...... ...+..++..|.+++...
T Consensus 5 ~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (246)
T PRK12938 5 IAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASE 59 (246)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEE
Confidence 56899999999999999999999887665433211 223445556687776443
No 299
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=56.88 E-value=41 Score=27.07 Aligned_cols=30 Identities=20% Similarity=0.280 Sum_probs=24.4
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 023695 26 LIEPTSGNTGIGLAFMAAAKQYRLIITMPA 55 (278)
Q Consensus 26 vv~assGN~g~a~A~~a~~~G~~~~vv~p~ 55 (278)
|..-.+|..|.++|..+...|++++++-+.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRS 31 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 344578999999999999999999999664
No 300
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=56.84 E-value=50 Score=32.21 Aligned_cols=51 Identities=16% Similarity=0.253 Sum_probs=39.6
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
.+++.+..|..|+.+|..-...|++++++ +.++.+++.++.+|..++.-+.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvI---D~d~~~v~~~~~~g~~v~~GDa 451 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVL---ERDISAVNLMRKYGYKVYYGDA 451 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEE---ECCHHHHHHHHhCCCeEEEeeC
Confidence 46888999999999999988899998777 3345677777777777766654
No 301
>PRK08303 short chain dehydrogenase; Provisional
Probab=56.79 E-value=1.1e+02 Score=26.68 Aligned_cols=72 Identities=15% Similarity=0.088 Sum_probs=44.3
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-----------CHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHH
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-----------SLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEI 91 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~-----------~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~ 91 (278)
..||+..++--|.++|..-...|.+++++-.... .....+.++..|.+++.+..+ .+.++..+...+.
T Consensus 10 ~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 89 (305)
T PRK08303 10 VALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALVERI 89 (305)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 6788888888999999999899998777654311 122334556667766544321 2344455555555
Q ss_pred HHhC
Q 023695 92 LAKT 95 (278)
Q Consensus 92 ~~~~ 95 (278)
.++.
T Consensus 90 ~~~~ 93 (305)
T PRK08303 90 DREQ 93 (305)
T ss_pred HHHc
Confidence 4543
No 302
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=56.54 E-value=89 Score=28.33 Aligned_cols=52 Identities=8% Similarity=-0.044 Sum_probs=33.6
Q ss_pred EEEEeCCChHHHHHHHHHHHcCC---eEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 25 VLIEPTSGNTGIGLAFMAAAKQY---RLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~~~G~---~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
.|+..+++..++.++..+-. +- .-.|++|.-.-..-...++.+|++++.++-
T Consensus 92 ~i~it~G~~~al~~~~~~l~-~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~vp~ 146 (396)
T PRK09147 92 QVLPVNGSREALFAFAQTVI-DRDGPGPLVVCPNPFYQIYEGAALLAGAEPYFLNC 146 (396)
T ss_pred eEEECCChHHHHHHHHHHHc-CCCCCCCEEEEcCCCccchHHHHHhcCCEEEEecc
Confidence 46667777888776665432 22 234555654445556667889999999874
No 303
>PLN00175 aminotransferase family protein; Provisional
Probab=56.47 E-value=70 Score=29.39 Aligned_cols=51 Identities=10% Similarity=0.008 Sum_probs=33.9
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 26 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 26 vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
|+..+++..+..++..+- ++-.-.|++++..-..-...++.+|++++.++-
T Consensus 118 I~vt~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~ 168 (413)
T PLN00175 118 VTVTSGCTEAIAATILGL-INPGDEVILFAPFYDSYEATLSMAGAKIKTVTL 168 (413)
T ss_pred EEEeCCHHHHHHHHHHHh-CCCCCEEEEeCCCchhHHHHHHHcCCEEEEEEC
Confidence 666677778877766643 333345555655555556778889999998864
No 304
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=56.41 E-value=1e+02 Score=25.20 Aligned_cols=53 Identities=25% Similarity=0.227 Sum_probs=36.7
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHH-HHHHHHHcCCEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLE-RRIILRAFGAELVLTD 76 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~-~~~~~~~~Ga~v~~~~ 76 (278)
+.+|+..+|..|..++..-...|.+++++........ ....++..|.++..+.
T Consensus 7 ~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (246)
T PRK05653 7 TALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLV 60 (246)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEE
Confidence 6788889999999999998888999655554322211 2344556677776644
No 305
>PRK07035 short chain dehydrogenase; Provisional
Probab=56.36 E-value=1e+02 Score=25.54 Aligned_cols=52 Identities=15% Similarity=0.080 Sum_probs=35.3
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEe
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLT 75 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~ 75 (278)
..+|+..+|.-|.+++......|.+++++-..... ....+.+...|.++..+
T Consensus 10 ~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~ 62 (252)
T PRK07035 10 IALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEAL 62 (252)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEE
Confidence 67899999999999999999999987766543211 12233444556665544
No 306
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=56.35 E-value=58 Score=31.20 Aligned_cols=52 Identities=10% Similarity=-0.009 Sum_probs=40.6
Q ss_pred EEEEeCC---ChHHHHHHHHHHHcC-CeEEEEeCCCC--CHHHHHHHHHcCCEEEEeC
Q 023695 25 VLIEPTS---GNTGIGLAFMAAAKQ-YRLIITMPASM--SLERRIILRAFGAELVLTD 76 (278)
Q Consensus 25 ~vv~ass---GN~g~a~A~~a~~~G-~~~~vv~p~~~--~~~~~~~~~~~Ga~v~~~~ 76 (278)
+|+-... +|.++|++..++++| ++++++.|+.. +...++.++..|+.+..+.
T Consensus 176 kVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~ 233 (525)
T PRK13376 176 HIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFS 233 (525)
T ss_pred EEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 4444445 699999999999998 99999999865 4455566777899888776
No 307
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=56.29 E-value=97 Score=25.56 Aligned_cols=53 Identities=19% Similarity=0.067 Sum_probs=35.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTD 76 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~-~~~~~~~~~~~Ga~v~~~~ 76 (278)
+.+|+..+|--|.++|......|.+++++..... .....+.++..|.++..+.
T Consensus 7 ~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (253)
T PRK08217 7 VIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYA 60 (253)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 6788888899999999999889988666543321 1223344555677765543
No 308
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=56.24 E-value=37 Score=31.33 Aligned_cols=94 Identities=18% Similarity=0.214 Sum_probs=55.3
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCcc
Q 023695 20 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAY 99 (278)
Q Consensus 20 ~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~ 99 (278)
.+| ++++....|+-|+.+|..++.+|.+++++=. + +.+.......|+++. + .++ ..+.. +.+
T Consensus 193 l~G-k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~-d--p~r~~~A~~~G~~v~--~----lee-------al~~a-DVV 254 (406)
T TIGR00936 193 IAG-KTVVVAGYGWCGKGIAMRARGMGARVIVTEV-D--PIRALEAAMDGFRVM--T----MEE-------AAKIG-DIF 254 (406)
T ss_pred CCc-CEEEEECCCHHHHHHHHHHhhCcCEEEEEeC-C--hhhHHHHHhcCCEeC--C----HHH-------HHhcC-CEE
Confidence 344 4688899999999999999999998666422 2 234444556687553 1 121 11222 332
Q ss_pred ccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCcc
Q 023695 100 MLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGT 141 (278)
Q Consensus 100 ~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~ 141 (278)
+.--. ....+..+.+.++ ++..+++-+|.+..
T Consensus 255 -ItaTG-------~~~vI~~~~~~~m--K~GailiN~G~~~~ 286 (406)
T TIGR00936 255 -ITATG-------NKDVIRGEHFENM--KDGAIVANIGHFDV 286 (406)
T ss_pred -EECCC-------CHHHHHHHHHhcC--CCCcEEEEECCCCc
Confidence 22111 1223444566666 35678888887764
No 309
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=56.22 E-value=46 Score=32.71 Aligned_cols=51 Identities=22% Similarity=0.214 Sum_probs=37.6
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC---------C---------HHHHHHHHHcCCEEEE
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM---------S---------LERRIILRAFGAELVL 74 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~---------~---------~~~~~~~~~~Ga~v~~ 74 (278)
..|+.-.+|-.|++.|+..++.|++++||=.... + ...++.++.+|.++..
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~ 396 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFEL 396 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEEC
Confidence 4688889999999999999999999888843221 1 1235566778877653
No 310
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=56.03 E-value=1.4e+02 Score=26.07 Aligned_cols=127 Identities=17% Similarity=0.158 Sum_probs=74.2
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEEeCCCh--------HHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 6 GYSMISDAEAKGLITPGESVLIEPTSGN--------TGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 6 a~~~l~~a~~~g~l~~g~~~vv~assGN--------~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
+..++..|++.+. ..|+..|.+. .+.-+..+|+...+|+.+.+....+...+...-..|.+.+.++.
T Consensus 31 ~~avi~aAe~~~~-----Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d~ 105 (281)
T PRK06806 31 VMGAIKAAEELNS-----PIILQIAEVRLNHSPLHLIGPLMVAAAKQAKVPVAVHFDHGMTFEKIKEALEIGFTSVMFDG 105 (281)
T ss_pred HHHHHHHHHHhCC-----CEEEEcCcchhccCChHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEcC
Confidence 4556677777765 4555554432 23344456888899999999988787777777778999999986
Q ss_pred CC-ChHHHHHHHHH---HHHhCC-----CccccCCCCCCCchhhhhhchHHHHHhhh--CCCCCEEEEecCC
Q 023695 78 AK-GMKGAVQKAEE---ILAKTP-----NAYMLQQFENPANPKIHYETTGPELWKGS--GGRIDALVSGIGT 138 (278)
Q Consensus 78 ~~-~~~~~~~~a~~---~~~~~~-----~~~~~~~~~~~~~~~~g~~t~~~EI~~ql--~~~~d~iv~~vG~ 138 (278)
+. ++++-.+.+++ ++++.+ ..-.+.+.+++.. ..|...+-+|-..+. ...+|++-+++|+
T Consensus 106 s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~-~~g~s~t~~eea~~f~~~tg~DyLAvaiG~ 176 (281)
T PRK06806 106 SHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSE-DIEMLLTSTTEAKRFAEETDVDALAVAIGN 176 (281)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcc-cccceeCCHHHHHHHHHhhCCCEEEEccCC
Confidence 43 45555555544 444431 0112343333322 224322223323332 1358999888775
No 311
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=55.94 E-value=33 Score=27.07 Aligned_cols=47 Identities=19% Similarity=0.188 Sum_probs=37.1
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 26 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 26 vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
+|...+|+.|..++-.....|.+++++++...+... ..+.+++..+-
T Consensus 2 ~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-----~~~~~~~~~d~ 48 (183)
T PF13460_consen 2 LVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-----SPGVEIIQGDL 48 (183)
T ss_dssp EEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-----CTTEEEEESCT
T ss_pred EEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-----ccccccceeee
Confidence 677889999999999999999999999987543332 56667766654
No 312
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=55.94 E-value=1e+02 Score=26.14 Aligned_cols=50 Identities=34% Similarity=0.466 Sum_probs=36.0
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCC
Q 023695 17 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA 70 (278)
Q Consensus 17 g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga 70 (278)
+.+.+++..+|...+|..|.+++..++..|.+.+++.+.. +...++.+|+
T Consensus 140 ~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~----~~~~~~~~g~ 189 (309)
T cd05289 140 GGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA----NADFLRSLGA 189 (309)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch----hHHHHHHcCC
Confidence 4467776666666679999999999999999876665432 4555566775
No 313
>PRK08643 acetoin reductase; Validated
Probab=55.89 E-value=1.2e+02 Score=25.25 Aligned_cols=53 Identities=11% Similarity=0.110 Sum_probs=35.8
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH-HHHHHHHHcCCEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL-ERRIILRAFGAELVLTD 76 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~-~~~~~~~~~Ga~v~~~~ 76 (278)
..||+..+|.-|.++|......|.+++++-...... .....++..|.++..+.
T Consensus 4 ~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 57 (256)
T PRK08643 4 VALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVK 57 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 578889999999999999989999876665432111 12233455566665554
No 314
>PRK08912 hypothetical protein; Provisional
Probab=55.87 E-value=1.6e+02 Score=26.59 Aligned_cols=52 Identities=10% Similarity=0.052 Sum_probs=34.5
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 25 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
.|+..+++..+..++..+-. +-.-.|++|...-..-...++.+|++++.++-
T Consensus 89 ~i~~t~G~~~al~~~~~~~~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~ 140 (387)
T PRK08912 89 EVMVTSGATEALAAALLALV-EPGDEVVLFQPLYDAYLPLIRRAGGVPRLVRL 140 (387)
T ss_pred cEEEeCCcHHHHHHHHHHhc-CCCCEEEEeCCCchhhHHHHHHcCCEEEEEec
Confidence 46777788888876666542 22235556655545556677899999988764
No 315
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=55.51 E-value=88 Score=28.11 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=34.2
Q ss_pred ChHHHHHHHHHHHcCCeEEEEeCCCC--CHHHHHHHH----HcCCEEEEeC
Q 023695 32 GNTGIGLAFMAAAKQYRLIITMPASM--SLERRIILR----AFGAELVLTD 76 (278)
Q Consensus 32 GN~g~a~A~~a~~~G~~~~vv~p~~~--~~~~~~~~~----~~Ga~v~~~~ 76 (278)
.|.++|+...++++|++++++-|+.- +...+..++ ..|.++....
T Consensus 164 ~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (338)
T PRK02255 164 TQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTD 214 (338)
T ss_pred chHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEc
Confidence 68999999999999999999999853 333343333 4688887765
No 316
>PRK07478 short chain dehydrogenase; Provisional
Probab=55.44 E-value=1e+02 Score=25.68 Aligned_cols=72 Identities=15% Similarity=0.072 Sum_probs=43.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAKT 95 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 95 (278)
..+|+..+|.-|.++|..-...|.+++++...... ..-...++..|.++..+..+ .+.++..+...++.++.
T Consensus 8 ~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (254)
T PRK07478 8 VAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERF 81 (254)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 67888888999999999988999987766433211 11233455667666555421 23344444455554443
No 317
>PRK06181 short chain dehydrogenase; Provisional
Probab=55.43 E-value=95 Score=26.00 Aligned_cols=53 Identities=21% Similarity=0.205 Sum_probs=36.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 76 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~ 76 (278)
..+|+..+|.-|.+++......|.+++++...... ....+.++..|.++..+.
T Consensus 3 ~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~ 56 (263)
T PRK06181 3 VVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVP 56 (263)
T ss_pred EEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 56888899999999999988999987776543211 122334455677665543
No 318
>PRK08017 oxidoreductase; Provisional
Probab=55.43 E-value=1.2e+02 Score=25.15 Aligned_cols=51 Identities=24% Similarity=0.308 Sum_probs=38.5
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
+.+|+..+|.-|.++|..-...|.+++++... ..+++.++..|++.+.++-
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~D~ 54 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRK---PDDVARMNSLGFTGILLDL 54 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHhHHHHhCCCeEEEeec
Confidence 56888888999999999988889987665433 3555666667887777664
No 319
>PRK05876 short chain dehydrogenase; Provisional
Probab=55.25 E-value=1.1e+02 Score=26.17 Aligned_cols=71 Identities=14% Similarity=0.059 Sum_probs=42.8
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAK 94 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~-~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 94 (278)
..||+..+|--|.++|..-...|.+++++..... .......++..|.++..+.-+ .+.++..+...+..++
T Consensus 8 ~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (275)
T PRK05876 8 GAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRL 80 (275)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 6789889999999999999999998766543211 112233455667776554321 2333344444444444
No 320
>PRK06841 short chain dehydrogenase; Provisional
Probab=55.24 E-value=1.2e+02 Score=25.15 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=26.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 55 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~ 55 (278)
..+|+..+|--|.++|......|.+++++-..
T Consensus 17 ~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~ 48 (255)
T PRK06841 17 VAVVTGGASGIGHAIAELFAAKGARVALLDRS 48 (255)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 67888888999999999999999987665443
No 321
>PRK06483 dihydromonapterin reductase; Provisional
Probab=55.22 E-value=1.2e+02 Score=24.96 Aligned_cols=67 Identities=21% Similarity=0.248 Sum_probs=44.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHH
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILA 93 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~ 93 (278)
+.+|+..+|--|.++|..-...|.+++++-... ....+.++..|++.+.++-. +.++..+...+..+
T Consensus 4 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~~~ 70 (236)
T PRK06483 4 PILITGAGQRIGLALAWHLLAQGQPVIVSYRTH--YPAIDGLRQAGAQCIQADFS-TNAGIMAFIDELKQ 70 (236)
T ss_pred eEEEECCCChHHHHHHHHHHHCCCeEEEEeCCc--hhHHHHHHHcCCEEEEcCCC-CHHHHHHHHHHHHh
Confidence 578889999999999999888999887765432 22345556678777766642 33333344444433
No 322
>PRK07806 short chain dehydrogenase; Provisional
Probab=55.04 E-value=1.2e+02 Score=25.04 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=35.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTD 76 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~--~~~~~~~~~~Ga~v~~~~ 76 (278)
+.+|+..+|.-|.+++......|.+++++...... ..-...++..|.++..+.
T Consensus 8 ~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~ 62 (248)
T PRK07806 8 TALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVG 62 (248)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEE
Confidence 67888888999999999988899998776543211 111233455566665543
No 323
>PRK08278 short chain dehydrogenase; Provisional
Probab=55.04 E-value=1.3e+02 Score=25.51 Aligned_cols=53 Identities=17% Similarity=0.211 Sum_probs=37.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--------HHHHHHHHHcCCEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--------LERRIILRAFGAELVLTD 76 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~--------~~~~~~~~~~Ga~v~~~~ 76 (278)
..+|+..+|--|.++|......|.+++++...... ..-...++..|.+++.+.
T Consensus 8 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 68 (273)
T PRK08278 8 TLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLV 68 (273)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEE
Confidence 67888888999999999999999988877654321 111234556777765553
No 324
>PRK07454 short chain dehydrogenase; Provisional
Probab=55.02 E-value=1.1e+02 Score=25.20 Aligned_cols=71 Identities=17% Similarity=0.149 Sum_probs=42.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAK 94 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 94 (278)
..+|+.++|..|.+++......|.+++++...... ......++..+.++..+..+ .+.+...+...+..++
T Consensus 8 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (241)
T PRK07454 8 RALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQ 80 (241)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 57888889999999999999999987776543211 11223344456566544321 2334343444444443
No 325
>PRK07791 short chain dehydrogenase; Provisional
Probab=55.00 E-value=1.2e+02 Score=26.03 Aligned_cols=73 Identities=18% Similarity=0.174 Sum_probs=44.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC----------CCHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHH
Q 023695 23 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS----------MSLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEI 91 (278)
Q Consensus 23 ~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~----------~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~ 91 (278)
...||+..++--|.++|......|.+++++.... ......+.++..|.++..+..+ .+.++..+...+.
T Consensus 7 k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 86 (286)
T PRK07791 7 RVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLVDAA 86 (286)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHH
Confidence 3678988889999999999999999877764321 1112234455567766554321 2334444445555
Q ss_pred HHhC
Q 023695 92 LAKT 95 (278)
Q Consensus 92 ~~~~ 95 (278)
.++.
T Consensus 87 ~~~~ 90 (286)
T PRK07791 87 VETF 90 (286)
T ss_pred HHhc
Confidence 4443
No 326
>PRK12744 short chain dehydrogenase; Provisional
Probab=54.95 E-value=1e+02 Score=25.79 Aligned_cols=70 Identities=23% Similarity=0.103 Sum_probs=42.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-C----HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHH
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-S----LERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILA 93 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~-~----~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~ 93 (278)
..+|+..+|.-|.++|..-...|.+++++..... . ....+.++..+.++..+..+ .+.++..+...+..+
T Consensus 10 ~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 85 (257)
T PRK12744 10 VVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKA 85 (257)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHH
Confidence 6788888999999999998889999776653211 1 12234455567776554321 233333444444433
No 327
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=54.87 E-value=1.1e+02 Score=25.17 Aligned_cols=53 Identities=15% Similarity=0.136 Sum_probs=37.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 76 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~ 76 (278)
+.+|+..+|.-|.+++..-...|.+++++...... ......++..+.++..+.
T Consensus 8 ~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~ 61 (251)
T PRK12826 8 VALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQ 61 (251)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 67888899999999999988889987776543211 223344566676665554
No 328
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=54.83 E-value=52 Score=29.19 Aligned_cols=53 Identities=17% Similarity=0.195 Sum_probs=33.9
Q ss_pred HcCCeEEEEe--CCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCC
Q 023695 44 AKQYRLIITM--PASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTP 96 (278)
Q Consensus 44 ~~G~~~~vv~--p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~ 96 (278)
.++=+-++++ |..+++.--..++.+|..|...++.+.++-+.+.+..+.+++|
T Consensus 73 ~lnpd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp 127 (337)
T COG2247 73 ELNPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFREDYP 127 (337)
T ss_pred hhCCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHhhch
Confidence 3343444443 3345566667888889988888886666667776666655543
No 329
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=54.57 E-value=1.2e+02 Score=24.93 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=36.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 76 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~ 76 (278)
..+|+.++|..|.+++..-...|.+++++...... ......++..|.+++.+.
T Consensus 9 ~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (239)
T PRK07666 9 NALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIAT 62 (239)
T ss_pred EEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEE
Confidence 57888889999999999988899987776543211 112334455676776554
No 330
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=54.56 E-value=1.4e+02 Score=25.51 Aligned_cols=70 Identities=20% Similarity=0.170 Sum_probs=39.4
Q ss_pred eEEEEeCCC--hHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHH-HHcCCEE-EEeCCCCChHHHHHHHHHHHHh
Q 023695 24 SVLIEPTSG--NTGIGLAFMAAAKQYRLIITMPASMSLERRIIL-RAFGAEL-VLTDPAKGMKGAVQKAEEILAK 94 (278)
Q Consensus 24 ~~vv~assG--N~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~-~~~Ga~v-~~~~~~~~~~~~~~~a~~~~~~ 94 (278)
..||+..++ .-|+++|..-...|.+++++-.......+++.+ +..|..+ +.++- .+.++..+...+..++
T Consensus 9 ~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv-~d~~~v~~~~~~~~~~ 82 (271)
T PRK06505 9 RGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDV-EDIASVDAVFEALEKK 82 (271)
T ss_pred EEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCC-CCHHHHHHHHHHHHHH
Confidence 567877765 789999999999999887764322112233333 3345433 33443 2334444444454444
No 331
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=54.45 E-value=19 Score=27.70 Aligned_cols=31 Identities=26% Similarity=0.345 Sum_probs=26.1
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCC
Q 023695 26 LIEPTSGNTGIGLAFMAAAKQYRLIITMPAS 56 (278)
Q Consensus 26 vv~assGN~g~a~A~~a~~~G~~~~vv~p~~ 56 (278)
|+...+|.-+.+++..++.+|++++++=|+.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 4567889999999999999999999998874
No 332
>PRK07831 short chain dehydrogenase; Provisional
Probab=54.44 E-value=1.3e+02 Score=25.21 Aligned_cols=31 Identities=29% Similarity=0.446 Sum_probs=23.9
Q ss_pred CCeEEEEeCCC-hHHHHHHHHHHHcCCeEEEE
Q 023695 22 GESVLIEPTSG-NTGIGLAFMAAAKQYRLIIT 52 (278)
Q Consensus 22 g~~~vv~assG-N~g~a~A~~a~~~G~~~~vv 52 (278)
+.+.+|+..+| .-|.++|......|.+++++
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~ 48 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGARVVIS 48 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCCEEEEE
Confidence 33678877776 69999999998999885554
No 333
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=54.42 E-value=98 Score=27.34 Aligned_cols=61 Identities=16% Similarity=0.189 Sum_probs=40.3
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHH----HHHcCCEEEEeC
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRII----LRAFGAELVLTD 76 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~--~~~~~~----~~~~Ga~v~~~~ 76 (278)
..|.++ |.+..+..-.+|..+|++.+++++|++++++.|+... ...++. .+..|.++...+
T Consensus 142 ~~g~l~-g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 208 (304)
T TIGR00658 142 HFGKLK-GVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTH 208 (304)
T ss_pred HhCCCC-CcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 346543 3233333333799999999999999999999998542 333333 355788887765
No 334
>PRK06701 short chain dehydrogenase; Provisional
Probab=54.25 E-value=1.4e+02 Score=25.67 Aligned_cols=54 Identities=17% Similarity=0.158 Sum_probs=38.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEeC
Q 023695 23 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTD 76 (278)
Q Consensus 23 ~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~--~~~~~~~~~~Ga~v~~~~ 76 (278)
...||+..+|--|.++|..-.+.|.+++++...... ......++..|.++..+.
T Consensus 47 k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 102 (290)
T PRK06701 47 KVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIP 102 (290)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEE
Confidence 367888888999999999998899998776544322 233445566677775544
No 335
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=54.17 E-value=75 Score=28.18 Aligned_cols=35 Identities=17% Similarity=0.094 Sum_probs=28.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS 58 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~ 58 (278)
+..+..-.+|.++|+..+++++|+.++++-|+...
T Consensus 155 ~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~ 189 (311)
T PRK14804 155 QLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAK 189 (311)
T ss_pred EEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCcc
Confidence 43444445899999999999999999999998754
No 336
>PLN02477 glutamate dehydrogenase
Probab=54.09 E-value=1.1e+02 Score=28.23 Aligned_cols=51 Identities=12% Similarity=-0.041 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 023695 4 KIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 54 (278)
Q Consensus 4 R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p 54 (278)
|+..+.+..+.+.-.....+.+|+.-..||-|..+|......|.+++.+..
T Consensus 187 ~Gv~~~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD 237 (410)
T PLN02477 187 RGVVFATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSD 237 (410)
T ss_pred HHHHHHHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEC
Confidence 566777777665422244445688888899999999999888888776643
No 337
>PRK07832 short chain dehydrogenase; Provisional
Probab=54.02 E-value=1.4e+02 Score=25.32 Aligned_cols=30 Identities=20% Similarity=0.233 Sum_probs=24.6
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEe
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITM 53 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~ 53 (278)
+.+|+.++|.-|.++|......|.+++++-
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~~~ 31 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFLTD 31 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 468888889999999999888898866554
No 338
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=53.88 E-value=24 Score=24.79 Aligned_cols=48 Identities=19% Similarity=0.229 Sum_probs=29.7
Q ss_pred HHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCCc
Q 023695 121 LWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPV 168 (278)
Q Consensus 121 I~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~ 168 (278)
.+++.-...|.+|+-+..|..+--|+-.++....++.|+.|+..+.-.
T Consensus 4 ~~~~~~~~~d~~I~i~A~GivvR~iap~l~dK~~DPaVvvvde~g~~v 51 (84)
T PF11760_consen 4 LLRELFRRYDAIIFIMAAGIVVRAIAPLLKDKDTDPAVVVVDEDGRFV 51 (84)
T ss_dssp -HHHHCCC-SEEEEES-HHHHHHHHHHH---TTT--EEEEE-TT--EE
T ss_pred HHHHHHcCCCeEEEEeCcHHHHHHhChhhcccCCCCCEEEEeCCCCEE
Confidence 344444567989988888988888888888888899999999888753
No 339
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=53.82 E-value=66 Score=29.05 Aligned_cols=53 Identities=28% Similarity=0.429 Sum_probs=38.0
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023695 17 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 72 (278)
Q Consensus 17 g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v 72 (278)
+.+++|++.+|. ..|..|.+++..|+.+|...++.+.. +..+.+.++.+|++-
T Consensus 199 ~~~~~g~~VlV~-g~g~vG~~ai~lA~~~G~~~vi~~~~--~~~~~~~~~~~g~~~ 251 (384)
T cd08265 199 GGFRPGAYVVVY-GAGPIGLAAIALAKAAGASKVIAFEI--SEERRNLAKEMGADY 251 (384)
T ss_pred CCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHHHHHHcCCCE
Confidence 567788766666 57999999999999999854444422 334777888888743
No 340
>CHL00194 ycf39 Ycf39; Provisional
Probab=53.79 E-value=63 Score=28.31 Aligned_cols=50 Identities=26% Similarity=0.387 Sum_probs=35.6
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 76 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~ 76 (278)
+.+|+..+|..|..++......|.+++++.... .+...+...|.+++..+
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~---~~~~~l~~~~v~~v~~D 51 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNL---RKASFLKEWGAELVYGD 51 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcCh---HHhhhHhhcCCEEEECC
Confidence 468899999999999999889999988887542 12222333466655544
No 341
>PRK13243 glyoxylate reductase; Reviewed
Probab=53.70 E-value=92 Score=27.82 Aligned_cols=96 Identities=18% Similarity=0.157 Sum_probs=59.3
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 103 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 103 (278)
++|..-.-||-|.++|..++.+|++++++-|.. ... ....+|... . +.+ ++.++. +...++-
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~-~~~---~~~~~~~~~---~---~l~-------ell~~a-DiV~l~l 212 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTR-KPE---AEKELGAEY---R---PLE-------ELLRES-DFVSLHV 212 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC-Chh---hHHHcCCEe---c---CHH-------HHHhhC-CEEEEeC
Confidence 456667889999999999999999987775532 221 123445421 1 222 233333 4444432
Q ss_pred CCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHH
Q 023695 104 FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTIT 143 (278)
Q Consensus 104 ~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~a 143 (278)
..++ .-...+..|.++++ +++.+++-++.|+..-
T Consensus 213 P~t~----~T~~~i~~~~~~~m--k~ga~lIN~aRg~~vd 246 (333)
T PRK13243 213 PLTK----ETYHMINEERLKLM--KPTAILVNTARGKVVD 246 (333)
T ss_pred CCCh----HHhhccCHHHHhcC--CCCeEEEECcCchhcC
Confidence 2222 22334566788887 4789999999998764
No 342
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=53.67 E-value=1.1e+02 Score=27.73 Aligned_cols=55 Identities=25% Similarity=0.273 Sum_probs=37.7
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHc-CCEE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAF-GAEL 72 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~-Ga~v 72 (278)
+.+.+.++++.+|. .+|-.|.+++..|+..|.+.++.+.. ++.+++.++.+ |+++
T Consensus 178 ~~~~~~~g~~VlV~-g~G~vG~~~~~la~~~g~~~vi~~~~--~~~~~~~~~~~~~~~v 233 (386)
T cd08283 178 ELAEVKPGDTVAVW-GCGPVGLFAARSAKLLGAERVIAIDR--VPERLEMARSHLGAET 233 (386)
T ss_pred hhccCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHHHHHHcCCcEE
Confidence 44567777666665 56888999999999999864444432 35677777777 5543
No 343
>PRK12831 putative oxidoreductase; Provisional
Probab=53.44 E-value=65 Score=30.21 Aligned_cols=53 Identities=17% Similarity=0.072 Sum_probs=39.5
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC---C--CHHHHHHHHHcCCEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS---M--SLERRIILRAFGAELVLTD 76 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~---~--~~~~~~~~~~~Ga~v~~~~ 76 (278)
+.++.-.+||.|.-+|..+.++|.+++++...+ . ....++.++..|.+++.-.
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~~~ 339 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDLLT 339 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEecc
Confidence 357888999999999999999999988887542 1 2244455667788776543
No 344
>PRK06128 oxidoreductase; Provisional
Probab=53.43 E-value=1.5e+02 Score=25.63 Aligned_cols=72 Identities=17% Similarity=0.099 Sum_probs=44.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC-CC--CHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 023695 23 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA-SM--SLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAK 94 (278)
Q Consensus 23 ~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~-~~--~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 94 (278)
.+.||+..+|--|.++|..-.+.|.++++.... .. .......++..|.++..+..+ .+.+...+...+..+.
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 131 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKE 131 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 367899999999999999998999988765432 21 123345566778777655432 2233333444444443
No 345
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=53.31 E-value=32 Score=35.50 Aligned_cols=51 Identities=14% Similarity=0.204 Sum_probs=39.6
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC---------CC---------HHHHHHHHHcCCEEEE
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS---------MS---------LERRIILRAFGAELVL 74 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~---------~~---------~~~~~~~~~~Ga~v~~ 74 (278)
+.|+.-.+|-.|++.|+..++.|++++||=... .+ ...++.++.+|.+++.
T Consensus 307 kkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~ 375 (944)
T PRK12779 307 PPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVK 375 (944)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEE
Confidence 568888999999999999999999999994221 11 2346678889988753
No 346
>PRK06194 hypothetical protein; Provisional
Probab=53.29 E-value=1.4e+02 Score=25.34 Aligned_cols=71 Identities=20% Similarity=0.178 Sum_probs=42.6
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAK 94 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~-~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 94 (278)
..||+..+|.-|.++|..-...|.+++++-.... .......+...|.+++.+..+ .+.++..+...+..++
T Consensus 8 ~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 80 (287)
T PRK06194 8 VAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALER 80 (287)
T ss_pred EEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 6799999999999999998889998776643221 122233444557777655432 2333333333444333
No 347
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=53.08 E-value=1.3e+02 Score=26.86 Aligned_cols=54 Identities=22% Similarity=0.145 Sum_probs=35.3
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 17 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 17 g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
+.+++|.+.+|. .+|-.|.+++..|+.+|.+.+++... +..+...++.+|++.+
T Consensus 176 ~~~~~g~~vlV~-G~G~vG~~av~~Ak~~G~~vi~~~~~--~~~~~~~~~~~Ga~~~ 229 (357)
T PLN02514 176 GLKQSGLRGGIL-GLGGVGHMGVKIAKAMGHHVTVISSS--DKKREEALEHLGADDY 229 (357)
T ss_pred ccCCCCCeEEEE-cccHHHHHHHHHHHHCCCeEEEEeCC--HHHHHHHHHhcCCcEE
Confidence 444566565555 67889999999999999886555432 2223344567888643
No 348
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=52.98 E-value=2.2e+02 Score=27.44 Aligned_cols=59 Identities=20% Similarity=0.129 Sum_probs=49.0
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 19 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 19 l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
+++|....+.+.-.-+-..++++|-..|....-+=|.-.+.+...+++...+++++++.
T Consensus 69 i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif~d~ 127 (537)
T KOG1176|consen 69 IKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIFVDE 127 (537)
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCHHHHHHHHHhcCCeEEEEcC
Confidence 56665555555556788889999999999888888888888899999999999999996
No 349
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=52.89 E-value=1.7e+02 Score=26.21 Aligned_cols=117 Identities=17% Similarity=0.179 Sum_probs=76.8
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHH
Q 023695 14 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILA 93 (278)
Q Consensus 14 ~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~ 93 (278)
....+++|| ++++...=|--|+|++.-|+..|-.=+|=+ +..+.|.+..+.+|++=
T Consensus 185 ~~~Akv~~G-stvAVfGLG~VGLav~~Gaka~GAsrIIgv--DiN~~Kf~~ak~fGaTe--------------------- 240 (375)
T KOG0022|consen 185 WNTAKVEPG-STVAVFGLGGVGLAVAMGAKAAGASRIIGV--DINPDKFEKAKEFGATE--------------------- 240 (375)
T ss_pred hhhcccCCC-CEEEEEecchHHHHHHHhHHhcCcccEEEE--ecCHHHHHHHHhcCcce---------------------
Confidence 344557777 468888889999999999999886544433 34566777777777642
Q ss_pred hCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCC
Q 023695 94 KTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESP 167 (278)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~ 167 (278)
++||-+-. . .+-.-|.|..++.+|+-|=++|+=.++.-.....+.-+...-++||.+.+..
T Consensus 241 ------~iNp~d~~-----~--~i~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~~~~ 301 (375)
T KOG0022|consen 241 ------FINPKDLK-----K--PIQEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAAGQE 301 (375)
T ss_pred ------ecChhhcc-----c--cHHHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCCCcc
Confidence 22221100 0 1111233444567999999998877777666666666677889999988774
No 350
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=52.66 E-value=1.1e+02 Score=25.06 Aligned_cols=132 Identities=17% Similarity=0.255 Sum_probs=0.0
Q ss_pred CCCCCeEEEEeCCChHHHHHHHH------------------------HHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 19 ITPGESVLIEPTSGNTGIGLAFM------------------------AAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 19 l~~g~~~vv~assGN~g~a~A~~------------------------a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
++|| +.+.+-.+|.-++++-++ |+++|++-+.++..+++....+.- -.+.++
T Consensus 32 ~~~g-~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~---~~daiF 107 (187)
T COG2242 32 PRPG-DRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP---SPDAIF 107 (187)
T ss_pred CCCC-CEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC---CCCEEE
Q ss_pred eCCCCChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCC
Q 023695 75 TDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNP 154 (278)
Q Consensus 75 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~ 154 (278)
+++....++..+.+.+..+.. +...++-- ..--...+.|.++|++.. +.+-+.++-|.-+.+ +..|+..+|
T Consensus 108 IGGg~~i~~ile~~~~~l~~g-grlV~nai------tlE~~~~a~~~~~~~g~~-ei~~v~is~~~~lg~-~~~~~~~nP 178 (187)
T COG2242 108 IGGGGNIEEILEAAWERLKPG-GRLVANAI------TLETLAKALEALEQLGGR-EIVQVQISRGKPLGG-GTMFRPVNP 178 (187)
T ss_pred ECCCCCHHHHHHHHHHHcCcC-CeEEEEee------cHHHHHHHHHHHHHcCCc-eEEEEEeecceeccC-eeEeecCCC
Q ss_pred CcEEEEEec
Q 023695 155 NIKLYGIEP 163 (278)
Q Consensus 155 ~~~vigV~~ 163 (278)
.+-+.++.+
T Consensus 179 v~i~~g~k~ 187 (187)
T COG2242 179 VFIISGVKP 187 (187)
T ss_pred EEEEEEecC
No 351
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=52.61 E-value=1.2e+02 Score=25.09 Aligned_cols=54 Identities=11% Similarity=0.007 Sum_probs=36.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEeCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDP 77 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~~ 77 (278)
..+|+..+|.-|.++|..-...|.+++++...... ......++..+.++..+..
T Consensus 5 ~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 59 (250)
T TIGR03206 5 TAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFAC 59 (250)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 67899999999999999988899987776543211 1122334555666655543
No 352
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=52.40 E-value=87 Score=28.62 Aligned_cols=55 Identities=20% Similarity=0.189 Sum_probs=45.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 78 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~ 78 (278)
+..+..+||-.+..+|+.+-..|=.-.|++|.-+.......+-..||+.++++-+
T Consensus 50 k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~~~Ga~PVFvDid 104 (374)
T COG0399 50 KYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAKPVFVDID 104 (374)
T ss_pred CeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHHHcCCeEEEEecC
Confidence 4678888899988888875446666788999988888889999999999999853
No 353
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=52.38 E-value=88 Score=29.18 Aligned_cols=79 Identities=15% Similarity=0.171 Sum_probs=47.4
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHH----HHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccc
Q 023695 25 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII----LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYM 100 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~----~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 100 (278)
..+..+||-.++.++..+- ++---.|++|...-...... ++.+|+++.+++...+.+ ..+. .+ .+....+|
T Consensus 78 ~av~~~SG~aAi~~al~al-l~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~-~l~~--~I-~~~Tk~I~ 152 (432)
T PRK06702 78 GAVATASGQAAIMLAVLNI-CSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTAD-EIVA--LA-NDKTKLVY 152 (432)
T ss_pred cEEEECCHHHHHHHHHHHh-cCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCHH-HHHH--hC-CcCCeEEE
Confidence 4566888988888888754 33334667776654433333 688999999998532222 2222 12 22235667
Q ss_pred cCCCCCCC
Q 023695 101 LQQFENPA 108 (278)
Q Consensus 101 ~~~~~~~~ 108 (278)
+....||.
T Consensus 153 ~e~pgnP~ 160 (432)
T PRK06702 153 AESLGNPA 160 (432)
T ss_pred EEcCCCcc
Confidence 76666776
No 354
>PRK05693 short chain dehydrogenase; Provisional
Probab=52.30 E-value=1.4e+02 Score=25.15 Aligned_cols=66 Identities=30% Similarity=0.183 Sum_probs=43.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHH
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILA 93 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~ 93 (278)
..+|+..+|-.|.++|......|.+++++... ..+++.+...+.+.+.++-. +.++..+...+..+
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~~~~ 68 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATARK---AEDVEALAAAGFTAVQLDVN-DGAALARLAEELEA 68 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHCCCeEEEeeCC-CHHHHHHHHHHHHH
Confidence 46888888999999999998999987776443 34555566667777666642 33333344444433
No 355
>PRK07890 short chain dehydrogenase; Provisional
Probab=52.27 E-value=1.1e+02 Score=25.34 Aligned_cols=54 Identities=15% Similarity=0.139 Sum_probs=35.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 023695 23 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 76 (278)
Q Consensus 23 ~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~ 76 (278)
.+.+|+..+|.-|+++|......|.+++++-..... +.....++..|.++..+.
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVP 60 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEe
Confidence 367999999999999999999999987766432211 112233444466554443
No 356
>PRK07069 short chain dehydrogenase; Validated
Probab=52.19 E-value=1.3e+02 Score=24.73 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=24.3
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 023695 25 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 55 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~~~G~~~~vv~p~ 55 (278)
.+|+..+|.-|.++|..-.+.|.+++++...
T Consensus 2 ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~ 32 (251)
T PRK07069 2 AFITGAAGGLGRAIARRMAEQGAKVFLTDIN 32 (251)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4788888899999998887788877666543
No 357
>PRK06949 short chain dehydrogenase; Provisional
Probab=52.16 E-value=1.1e+02 Score=25.38 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=27.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 55 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~ 55 (278)
+.+|+..+|.-|.++|....+.|.+++++...
T Consensus 11 ~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~ 42 (258)
T PRK06949 11 VALVTGASSGLGARFAQVLAQAGAKVVLASRR 42 (258)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 67888899999999999999999987766543
No 358
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=52.13 E-value=87 Score=22.56 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=30.5
Q ss_pred EEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 27 IEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 27 v~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
+....|+.|+.++-.-+..+.+++++-. .+.+.+.++..|.+++..+.
T Consensus 2 vI~G~g~~~~~i~~~L~~~~~~vvvid~---d~~~~~~~~~~~~~~i~gd~ 49 (116)
T PF02254_consen 2 VIIGYGRIGREIAEQLKEGGIDVVVIDR---DPERVEELREEGVEVIYGDA 49 (116)
T ss_dssp EEES-SHHHHHHHHHHHHTTSEEEEEES---SHHHHHHHHHTTSEEEES-T
T ss_pred EEEcCCHHHHHHHHHHHhCCCEEEEEEC---CcHHHHHHHhcccccccccc
Confidence 4566778888888887776666666633 34566666777766655443
No 359
>PRK05866 short chain dehydrogenase; Provisional
Probab=52.11 E-value=1.1e+02 Score=26.36 Aligned_cols=53 Identities=11% Similarity=0.019 Sum_probs=35.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 76 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~ 76 (278)
..+|+..+|--|.++|......|.+++++...... +...+.++..|.++..+.
T Consensus 42 ~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~ 95 (293)
T PRK05866 42 RILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVP 95 (293)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEE
Confidence 57888888999999999988899988776554211 112233444566655443
No 360
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=52.00 E-value=1.8e+02 Score=26.70 Aligned_cols=81 Identities=20% Similarity=0.137 Sum_probs=47.0
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCC-ChHHHHHHHHHHHHhCCCccccC-
Q 023695 25 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK-GMKGAVQKAEEILAKTPNAYMLQ- 102 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~- 102 (278)
.|+..++++.++.++..+-.. -.=.|+++..+-..-...++.+|++++.++-.. +++ .+..++..++....+|+.
T Consensus 143 ~Iiit~G~~~al~~~~~~l~~-pgd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~g~~--~~~l~~~~~~~~k~i~~~p 219 (431)
T PRK15481 143 EIDLTSGAIDAIERLLCAHLL-PGDSVAVEDPCFLSSINMLRYAGFSASPVSVDAEGMQ--PEKLERALAQGARAVILTP 219 (431)
T ss_pred eEEEecCcHHHHHHHHHHhCC-CCCEEEEeCCCcHHHHHHHHHcCCeEEeeccCCCCCC--HHHHHHHHhcCCCEEEECC
Confidence 577778888888777665322 112455566556666788899999999987422 222 122222223333555665
Q ss_pred CCCCCC
Q 023695 103 QFENPA 108 (278)
Q Consensus 103 ~~~~~~ 108 (278)
..+||.
T Consensus 220 ~p~NPT 225 (431)
T PRK15481 220 RAHNPT 225 (431)
T ss_pred CCCCCC
Confidence 445554
No 361
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=51.95 E-value=1.2e+02 Score=25.22 Aligned_cols=53 Identities=15% Similarity=0.143 Sum_probs=35.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEe
Q 023695 23 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLT 75 (278)
Q Consensus 23 ~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~ 75 (278)
.+.+|+..+|.-|.++|..-...|.+++++-..... ..-...++..|.++..+
T Consensus 12 k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~ 65 (256)
T PRK06124 12 QVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEAL 65 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEE
Confidence 367888899999999999888899987776543211 12233345566555444
No 362
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=51.93 E-value=1.3e+02 Score=24.69 Aligned_cols=33 Identities=9% Similarity=0.055 Sum_probs=27.8
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC
Q 023695 25 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM 57 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~ 57 (278)
.++.-.+|.-|..-+..-...|-+++|+-|+..
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~ 43 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKAGAQLRVIAEELE 43 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 477788999999988888889999998888654
No 363
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=51.84 E-value=87 Score=27.88 Aligned_cols=52 Identities=12% Similarity=0.036 Sum_probs=32.6
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 25 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
.|+..+++..++.++..+- ++-.-.|+++...-..-....+..|++++.++.
T Consensus 78 ~i~it~G~~~~l~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~ 129 (351)
T PRK14807 78 NIFVGNGSDEIIHLIMLAF-INKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKL 129 (351)
T ss_pred cEEEecCHHHHHHHHHHHh-cCCCCEEEEeCCChHHHHHHHHHcCCeEEEeec
Confidence 4666666677766655543 332234555654444556667889999999875
No 364
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=51.70 E-value=1.5e+02 Score=25.52 Aligned_cols=16 Identities=13% Similarity=0.177 Sum_probs=8.3
Q ss_pred HHHHHHcCCEEEEeCC
Q 023695 62 RIILRAFGAELVLTDP 77 (278)
Q Consensus 62 ~~~~~~~Ga~v~~~~~ 77 (278)
...++..+.+++.++.
T Consensus 73 ~~~l~~~~~d~vV~D~ 88 (279)
T TIGR03590 73 INLLEEEKFDILIVDH 88 (279)
T ss_pred HHHHHhcCCCEEEEcC
Confidence 3444555555555554
No 365
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=51.59 E-value=97 Score=29.36 Aligned_cols=39 Identities=13% Similarity=0.020 Sum_probs=18.2
Q ss_pred HHHHHHHcCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEeCC
Q 023695 38 LAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 38 ~A~~a~~~G~~~~vv~p~~-~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
....|..++.+.+|+...+ ....++..++ -.+.|+.+..
T Consensus 367 Av~~A~~l~akaIVv~T~SG~TA~~lS~~R-P~~pIiavT~ 406 (480)
T cd00288 367 AVRAAFELGAKAIVVLTTSGRTARLVSKYR-PNAPIIAVTR 406 (480)
T ss_pred HHHHHHhcCCCEEEEECCCcHHHHHHHhhC-CCCCEEEEcC
Confidence 3344556677766665442 2222233222 2456655554
No 366
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=51.53 E-value=1.4e+02 Score=24.72 Aligned_cols=53 Identities=13% Similarity=0.184 Sum_probs=36.8
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH-HHHHHHHHcCCEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL-ERRIILRAFGAELVLTD 76 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~-~~~~~~~~~Ga~v~~~~ 76 (278)
..+|+..+|..|.++|..-...|.+++++....... .....++..+.++..+.
T Consensus 6 ~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 59 (258)
T PRK12429 6 VALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVA 59 (258)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 678888899999999999888899887775543221 22334555676665443
No 367
>PRK05957 aspartate aminotransferase; Provisional
Probab=51.52 E-value=85 Score=28.44 Aligned_cols=54 Identities=11% Similarity=0.151 Sum_probs=31.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 78 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~ 78 (278)
+.|+..++++.+..++..+- +.-.-.|+++...-......++..|++++.++.+
T Consensus 90 ~~i~~t~G~~~~l~~~~~~~-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~ 143 (389)
T PRK05957 90 QAIVVTAGSNMAFMNAILAI-TDPGDEIILNTPYYFNHEMAITMAGCQPILVPTD 143 (389)
T ss_pred CeEEEeCChHHHHHHHHHHh-cCCCCEEEEeCCCCcCHHHHHHhcCCEEEEeecC
Confidence 35777777888876655443 2222234444322223344567889999988753
No 368
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=51.44 E-value=58 Score=28.74 Aligned_cols=60 Identities=18% Similarity=0.120 Sum_probs=38.8
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHH----HHHHHcCCEEEEeC
Q 023695 16 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERR----IILRAFGAELVLTD 76 (278)
Q Consensus 16 ~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~--~~~~----~~~~~~Ga~v~~~~ 76 (278)
.|.++ |.+..+..-..|.++|++.+++++|++++++.|+... ...+ ...+..|+++..++
T Consensus 142 ~g~l~-g~kva~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~ 207 (302)
T PRK14805 142 FGDVS-KVKLAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTS 207 (302)
T ss_pred hCCcC-CcEEEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 45543 3233333333577899999999999999999997632 2222 23455788887766
No 369
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=51.34 E-value=80 Score=28.34 Aligned_cols=52 Identities=10% Similarity=-0.113 Sum_probs=32.2
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 25 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
.|+..+++.++..++..+- +.-.-.|+++...-..-...++.+|.+++.++.
T Consensus 90 ~i~~t~G~~~~l~~~~~~~-~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~ 141 (371)
T PRK05166 90 RIILGNGSEDLIAVICRAV-LRPGDRVVTLYPSFPLHEDYPTMMGARVERVTV 141 (371)
T ss_pred HEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCChHHHHHHHHHcCCeEEEeec
Confidence 4666666677766554432 222234555554445556777889999998875
No 370
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=51.34 E-value=1.1e+02 Score=27.86 Aligned_cols=30 Identities=13% Similarity=-0.079 Sum_probs=15.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 48 RLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 48 ~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
|..++.-++.-..--+.++.+|-++.++.+
T Consensus 4 p~~i~fG~g~l~~l~~~~~~~g~r~livt~ 33 (380)
T cd08185 4 PTKIVFGAGKLNELGEEALKPGKKALIVTG 33 (380)
T ss_pred CCeEEECcCHHHHHHHHHHhcCCeEEEEeC
Confidence 344444444333334455566766666654
No 371
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=50.83 E-value=1.5e+02 Score=24.83 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=37.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTD 76 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~--~~~~~~~~~~Ga~v~~~~ 76 (278)
..+|+..+|.-|.++|..-...|.++++......+ ......++..|.++..+.
T Consensus 9 ~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~ 63 (261)
T PRK08936 9 VVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVK 63 (261)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 67898899999999999999999987776554322 222344556677765443
No 372
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=50.77 E-value=98 Score=27.51 Aligned_cols=52 Identities=15% Similarity=0.079 Sum_probs=34.4
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 25 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
.|+..++++.++.++..+- ++-.-.|++|...-..-....+.+|++++.++-
T Consensus 83 ~I~~t~G~~~~i~~~~~~~-~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~ 134 (356)
T PRK04870 83 DVLLGNGSDELIQLLALAC-AKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPL 134 (356)
T ss_pred cEEEcCCHHHHHHHHHHHh-cCCCCEEEECCCCHHHHHHHHHHcCCEEEEecC
Confidence 4666666677776665433 232235666665555667778899999999875
No 373
>PRK05867 short chain dehydrogenase; Provisional
Probab=50.74 E-value=1.4e+02 Score=24.79 Aligned_cols=71 Identities=13% Similarity=0.053 Sum_probs=41.5
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAK 94 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 94 (278)
..+|+..+|.-|.++|..-...|.+++++-..... +.....++..|.++..+..+ .+.+...+...++.++
T Consensus 11 ~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T PRK05867 11 RALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAE 83 (253)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 67888888999999999988999987665432111 12233445556666544321 2333333444444443
No 374
>PRK05973 replicative DNA helicase; Provisional
Probab=50.69 E-value=75 Score=26.99 Aligned_cols=54 Identities=28% Similarity=0.324 Sum_probs=40.6
Q ss_pred CCCCCCCeEEEEeCCC----hHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCC
Q 023695 17 GLITPGESVLIEPTSG----NTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA 70 (278)
Q Consensus 17 g~l~~g~~~vv~assG----N~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga 70 (278)
|-+.||..++|.+..| .++.-+|+.+.+.|.+++.|--+..+..-..++..+|.
T Consensus 59 GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R~~s~g~ 116 (237)
T PRK05973 59 SQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDRLRALGA 116 (237)
T ss_pred CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHcCC
Confidence 5567887778877554 56666677776779999888878777788888888875
No 375
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=50.59 E-value=1.5e+02 Score=24.84 Aligned_cols=49 Identities=20% Similarity=0.123 Sum_probs=33.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHH-cCCEEEEe
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRA-FGAELVLT 75 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~-~Ga~v~~~ 75 (278)
..+|+..+|.-|.++|..-...|.+++++-. +..+++.+.. ++.++..+
T Consensus 7 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r---~~~~~~~l~~~~~~~~~~~ 56 (262)
T TIGR03325 7 VVLVTGGASGLGRAIVDRFVAEGARVAVLDK---SAAGLQELEAAHGDAVVGV 56 (262)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHhhcCCceEEE
Confidence 6788888999999999999999998776532 2334444433 45555444
No 376
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=50.30 E-value=1.5e+02 Score=28.52 Aligned_cols=49 Identities=18% Similarity=0.177 Sum_probs=31.8
Q ss_pred eEEEEeCCChH---HHHHHHHHHHcCCeEEEEeCCCCCHH----HHHHHHHcCCEE
Q 023695 24 SVLIEPTSGNT---GIGLAFMAAAKQYRLIITMPASMSLE----RRIILRAFGAEL 72 (278)
Q Consensus 24 ~~vv~assGN~---g~a~A~~a~~~G~~~~vv~p~~~~~~----~~~~~~~~Ga~v 72 (278)
+.+|.+..||- |..+|..-...|+++.|++|...... ....++.+|..+
T Consensus 137 ~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~~~~~~~~~~~~~~~~~~~~~gi~~ 192 (544)
T PLN02918 137 RVLAICGPGNNGGDGLVAARHLHHFGYKPFVCYPKRTAKPLYTGLVTQLESLSVPF 192 (544)
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHCCCceEEEEcCCCCcHHHHHHHHHHHHcCCCe
Confidence 56777777763 35556666667999999997654332 345566667654
No 377
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=50.21 E-value=55 Score=29.73 Aligned_cols=54 Identities=17% Similarity=0.113 Sum_probs=36.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
+.++..++|..+..++..+-..+=.-.|++|..+-......+...|++++.++-
T Consensus 47 ~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~~~~G~~~v~vd~ 100 (376)
T TIGR02379 47 KKALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDI 100 (376)
T ss_pred CeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEec
Confidence 457777777777666654432222345677776666667777888999999875
No 378
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=50.19 E-value=1.4e+02 Score=24.86 Aligned_cols=53 Identities=17% Similarity=0.222 Sum_probs=35.3
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 76 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~ 76 (278)
..+|+..+|--|.++|..-...|.+++++...... +...+.++..+.++..+.
T Consensus 14 ~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~ 67 (259)
T PRK08213 14 TALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIA 67 (259)
T ss_pred EEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 67888888999999999988899987665432211 112334455677765554
No 379
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=50.17 E-value=1.6e+02 Score=24.99 Aligned_cols=52 Identities=35% Similarity=0.393 Sum_probs=34.5
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023695 17 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 71 (278)
Q Consensus 17 g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~ 71 (278)
..+.++.+.+|...+|..|.+++..++..|.+++++.+ +..+.+.++.+|++
T Consensus 135 ~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~---~~~~~~~~~~~g~~ 186 (323)
T cd05276 135 GGLKAGETVLIHGGASGVGTAAIQLAKALGARVIATAG---SEEKLEACRALGAD 186 (323)
T ss_pred cCCCCCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHcCCC
Confidence 44666666677666788888888888888888554433 23455555666653
No 380
>PRK07324 transaminase; Validated
Probab=49.66 E-value=98 Score=27.89 Aligned_cols=52 Identities=12% Similarity=-0.033 Sum_probs=33.5
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 25 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
.|+..+++..+..++..+- ++-.-.|+++...-..-....+.+|++++.++-
T Consensus 82 ~vi~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~ 133 (373)
T PRK07324 82 NILQTNGATGANFLVLYAL-VEPGDHVISVYPTYQQLYDIPESLGAEVDYWQL 133 (373)
T ss_pred hEEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCchhHHHHHHHcCCEEEEEec
Confidence 4666677777777766553 333234555554444556677889999998874
No 381
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=49.58 E-value=1.2e+02 Score=27.29 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=36.7
Q ss_pred EEEEeCC--ChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHH----HHHHcCCEEEEeC
Q 023695 25 VLIEPTS--GNTGIGLAFMAAAKQYRLIITMPASMS--LERRI----ILRAFGAELVLTD 76 (278)
Q Consensus 25 ~vv~ass--GN~g~a~A~~a~~~G~~~~vv~p~~~~--~~~~~----~~~~~Ga~v~~~~ 76 (278)
+|.-... -|.++|+..+++++|++++++-|+... ...++ ..+..|+++...+
T Consensus 158 ~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 217 (334)
T PRK12562 158 TLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTE 217 (334)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEc
Confidence 3444444 389999999999999999999998642 22232 2355688877665
No 382
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=49.44 E-value=85 Score=21.65 Aligned_cols=51 Identities=20% Similarity=0.079 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHH-HcCCeEEEEeCC
Q 023695 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAA-AKQYRLIITMPA 55 (278)
Q Consensus 5 ~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~-~~G~~~~vv~p~ 55 (278)
....++.+.+.++.+.-..+.||..+|.-+|+|...+++ ..|.+.+-|.-+
T Consensus 22 ~V~~qI~yvk~~~~~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 22 NVENQIEYVKSQGKINGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp HHHHHHHHHHHC---TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred HHHHHHHHHHhcCCCCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 455677777777766322467888888888888665554 566676665543
No 383
>PRK07326 short chain dehydrogenase; Provisional
Probab=49.41 E-value=1.4e+02 Score=24.30 Aligned_cols=31 Identities=29% Similarity=0.329 Sum_probs=26.5
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 54 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p 54 (278)
..+|+..+|..|.+++......|.+++++..
T Consensus 8 ~ilItGatg~iG~~la~~l~~~g~~V~~~~r 38 (237)
T PRK07326 8 VALITGGSKGIGFAIAEALLAEGYKVAITAR 38 (237)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEeeC
Confidence 6788889999999999998888999777654
No 384
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=49.36 E-value=38 Score=25.85 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=21.8
Q ss_pred CCCCCeEEEEeCCChHHHH--HHHHHHHcCCeEEEEe
Q 023695 19 ITPGESVLIEPTSGNTGIG--LAFMAAAKQYRLIITM 53 (278)
Q Consensus 19 l~~g~~~vv~assGN~g~a--~A~~a~~~G~~~~vv~ 53 (278)
++||+--|+.++|||...- .+..|+..|++++.+.
T Consensus 101 ~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 101 IRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp --TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 5677555666677886654 4566999999998764
No 385
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=49.26 E-value=58 Score=27.36 Aligned_cols=55 Identities=16% Similarity=0.132 Sum_probs=41.1
Q ss_pred CCCCCCCeEEEEeCCCh----HHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023695 17 GLITPGESVLIEPTSGN----TGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 71 (278)
Q Consensus 17 g~l~~g~~~vv~assGN----~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~ 71 (278)
|-+.+|...+|.+..|. .+..+++.+.+.|-+|..|.-+..+..-++.++.+|.+
T Consensus 16 GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~~g~~ 74 (237)
T TIGR03877 16 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFGWD 74 (237)
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHHhCCC
Confidence 55677777788776654 56666776667899998888777777778888888864
No 386
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=49.23 E-value=1.7e+02 Score=25.00 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=22.3
Q ss_pred eEEEEeCCCh-H--HHHHHHHHHHcCCeEEEEeCCC
Q 023695 24 SVLIEPTSGN-T--GIGLAFMAAAKQYRLIITMPAS 56 (278)
Q Consensus 24 ~~vv~assGN-~--g~a~A~~a~~~G~~~~vv~p~~ 56 (278)
+.+|.+..|| - |.++|..-+..|+++.|++++.
T Consensus 62 ~V~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~ 97 (246)
T PLN03050 62 RVLLVCGPGNNGGDGLVAARHLAHFGYEVTVCYPKQ 97 (246)
T ss_pred eEEEEECCCCCchhHHHHHHHHHHCCCeEEEEEcCC
Confidence 5566666665 3 4555666666799999998653
No 387
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=49.09 E-value=1.3e+02 Score=24.89 Aligned_cols=53 Identities=13% Similarity=0.119 Sum_probs=36.7
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTD 76 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~--~~~~~~~~~~Ga~v~~~~ 76 (278)
+.||+.++|--|.+++..-...|.++++....... ......++..|.++..+.
T Consensus 8 ~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (252)
T PRK06077 8 VVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVL 62 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEE
Confidence 67888888999999999888899987765533211 223445666777765543
No 388
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=49.08 E-value=76 Score=27.64 Aligned_cols=48 Identities=23% Similarity=0.271 Sum_probs=31.2
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcC-CeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023695 22 GESVLIEPTSGNTGIGLAFMAAAKQ-YRLIITMPASMSLERRIILRAFGAEL 72 (278)
Q Consensus 22 g~~~vv~assGN~g~a~A~~a~~~G-~~~~vv~p~~~~~~~~~~~~~~Ga~v 72 (278)
+.+.+|...+|-.|.+++..++.+| .+++++... ..+.+.++.+|++.
T Consensus 150 g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~---~~~~~~~~~~g~~~ 198 (336)
T cd08252 150 GKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASR---PESIAWVKELGADH 198 (336)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCC---hhhHHHHHhcCCcE
Confidence 6565665557888888888888888 665555333 34455556677643
No 389
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=49.02 E-value=1e+02 Score=27.88 Aligned_cols=89 Identities=8% Similarity=-0.012 Sum_probs=45.9
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCC--ChHHHHHHHHHHHHhCC
Q 023695 19 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK--GMKGAVQKAEEILAKTP 96 (278)
Q Consensus 19 l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~--~~~~~~~~a~~~~~~~~ 96 (278)
+.|.. .|+..+++..++.++..+- +.-.-.|+++.-+-..-...++..|++++.++-.. .+....+...+......
T Consensus 89 ~~~~~-~I~it~Gs~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~ 166 (388)
T PRK07366 89 VDPET-EVLPLIGSQEGTAHLPLAV-LNPGDFALLLDPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVLAQA 166 (388)
T ss_pred CCCcC-eEEECCCcHHHHHHHHHHh-CCCCCEEEEcCCCCcchHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhcccc
Confidence 44431 3666677777777665542 22112344455444445666788999999886421 12111111111112223
Q ss_pred CccccCCCCCCCc
Q 023695 97 NAYMLQQFENPAN 109 (278)
Q Consensus 97 ~~~~~~~~~~~~~ 109 (278)
..++++..+||..
T Consensus 167 k~i~l~~p~NPTG 179 (388)
T PRK07366 167 RLMVLSYPHNPTT 179 (388)
T ss_pred eEEEEeCCCCCCC
Confidence 5677766566653
No 390
>PRK07904 short chain dehydrogenase; Provisional
Probab=48.95 E-value=1e+02 Score=25.89 Aligned_cols=51 Identities=12% Similarity=0.170 Sum_probs=33.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHc-CCeEEEEeCCCCC--HHHHHHHHHcCC-EEEE
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAK-QYRLIITMPASMS--LERRIILRAFGA-ELVL 74 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~-G~~~~vv~p~~~~--~~~~~~~~~~Ga-~v~~ 74 (278)
..+|+..+|-.|.++|...... |.+++++...... ....+.++..|. +++.
T Consensus 10 ~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~ 64 (253)
T PRK07904 10 TILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEV 64 (253)
T ss_pred EEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEE
Confidence 6788888899999999887676 5888777554322 222344555553 4433
No 391
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=48.94 E-value=1.2e+02 Score=27.13 Aligned_cols=58 Identities=17% Similarity=0.091 Sum_probs=39.4
Q ss_pred CCCCCCCeEEEEeCC--ChHHHHHHHHHHHcCCeEEEEeCCCC--CHHHHH----HHHHcCCEEEEeC
Q 023695 17 GLITPGESVLIEPTS--GNTGIGLAFMAAAKQYRLIITMPASM--SLERRI----ILRAFGAELVLTD 76 (278)
Q Consensus 17 g~l~~g~~~vv~ass--GN~g~a~A~~a~~~G~~~~vv~p~~~--~~~~~~----~~~~~Ga~v~~~~ 76 (278)
|.++ | .+|+-... .|.++|++.+++++|+.++++.|+.. +...+. ..+..|.++....
T Consensus 151 g~l~-g-~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (332)
T PRK04284 151 KPYK-D-IKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITD 216 (332)
T ss_pred CCcC-C-cEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 5543 3 23444444 48999999999999999999999853 223332 2346788887765
No 392
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=48.74 E-value=1.6e+02 Score=24.51 Aligned_cols=53 Identities=21% Similarity=0.085 Sum_probs=35.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 76 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~ 76 (278)
..||+..+|.-|.++|..-.+.|.+++++-..... ......++..+.++..+.
T Consensus 11 ~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~ 64 (254)
T PRK08085 11 NILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAP 64 (254)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEe
Confidence 67999999999999999999999887765432111 112234445566665543
No 393
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=48.59 E-value=1.6e+02 Score=24.48 Aligned_cols=49 Identities=20% Similarity=0.189 Sum_probs=33.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHH-HHcCCEEEEe
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIIL-RAFGAELVLT 75 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~-~~~Ga~v~~~ 75 (278)
+.+|+..+|..|.++|......|.+++++... +.++..+ ...+.++..+
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~ 51 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRR---QERLQELKDELGDNLYIA 51 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHHhccceEEE
Confidence 46888899999999999999999987766432 2333333 2345555444
No 394
>PRK08264 short chain dehydrogenase; Validated
Probab=48.36 E-value=99 Score=25.38 Aligned_cols=31 Identities=13% Similarity=0.126 Sum_probs=26.3
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCC-eEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQY-RLIITMP 54 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~-~~~vv~p 54 (278)
..+|+..+|.-|.++|......|. +++++..
T Consensus 8 ~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r 39 (238)
T PRK08264 8 VVLVTGANRGIGRAFVEQLLARGAAKVYAAAR 39 (238)
T ss_pred EEEEECCCchHHHHHHHHHHHCCcccEEEEec
Confidence 678888999999999999999998 7666554
No 395
>PRK07814 short chain dehydrogenase; Provisional
Probab=48.06 E-value=1.5e+02 Score=24.92 Aligned_cols=53 Identities=15% Similarity=0.155 Sum_probs=34.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEe
Q 023695 23 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLT 75 (278)
Q Consensus 23 ~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~ 75 (278)
...+|+.++|--|.++|..-...|.+++++...... ......++..|..+..+
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~ 64 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVV 64 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEE
Confidence 367899999999999999888899987766543211 11223344445555443
No 396
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=47.97 E-value=1.6e+02 Score=24.47 Aligned_cols=68 Identities=13% Similarity=0.075 Sum_probs=44.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHh
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAK 94 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~ 94 (278)
..+|+..+|--|.++|..-...|.++++..... +.+.+.++..+...+.++-. +.+...+...++.++
T Consensus 9 ~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~--~~~~~~l~~~~~~~~~~Dl~-~~~~~~~~~~~~~~~ 76 (255)
T PRK06463 9 VALITGGTRGIGRAIAEAFLREGAKVAVLYNSA--ENEAKELREKGVFTIKCDVG-NRDQVKKSKEVVEKE 76 (255)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCc--HHHHHHHHhCCCeEEEecCC-CHHHHHHHHHHHHHH
Confidence 678888899999999999888999877654432 34445555556666666642 334444444444443
No 397
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=47.90 E-value=62 Score=30.12 Aligned_cols=46 Identities=20% Similarity=0.140 Sum_probs=32.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 72 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v 72 (278)
++++....|+-|+.+|..++.+|.+++++=. .+.+.......|.++
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~---dp~ra~~A~~~G~~v 258 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEV---DPICALQAAMDGFRV 258 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcC---CchhhHHHHhcCCEe
Confidence 4677788899999999999999997555422 233444444557764
No 398
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=47.82 E-value=1.6e+02 Score=24.26 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=27.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 55 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~ 55 (278)
+.+|+.++|..|.+++..-...|.+++++...
T Consensus 7 ~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~ 38 (251)
T PRK07231 7 VAIVTGASSGIGEGIARRFAAEGARVVVTDRN 38 (251)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 67999999999999999988999997666544
No 399
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=47.79 E-value=1.6e+02 Score=26.22 Aligned_cols=51 Identities=25% Similarity=0.290 Sum_probs=31.1
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCC
Q 023695 17 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA 70 (278)
Q Consensus 17 g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga 70 (278)
+.+.++.+.+|. .+|..|.+++..|+.+|.+.++++.. ++.+.+.++.+|+
T Consensus 183 ~~~~~g~~VlI~-g~g~vG~~~~~lak~~G~~~vi~~~~--s~~~~~~~~~~g~ 233 (367)
T cd08263 183 ADVRPGETVAVI-GVGGVGSSAIQLAKAFGASPIIAVDV--RDEKLAKAKELGA 233 (367)
T ss_pred ccCCCCCEEEEE-CCcHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCC
Confidence 344566565665 56788888888888888773333322 2344555555665
No 400
>PTZ00377 alanine aminotransferase; Provisional
Probab=47.67 E-value=2.2e+02 Score=26.75 Aligned_cols=54 Identities=13% Similarity=0.043 Sum_probs=36.8
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
+.|+..+++.+++.++..+-..+-.-.|++|.-.-..-...++.+|++++.++-
T Consensus 139 ~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P~y~~y~~~~~~~g~~~v~v~~ 192 (481)
T PTZ00377 139 SDIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYSAAITLLGGKQVPYYL 192 (481)
T ss_pred hhEEEcCCHHHHHHHHHHHhccCCCCEEEECCCCchhHHHHHHHcCCEEEEEEe
Confidence 357777778888887776543122234666665566667788899999998863
No 401
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=47.60 E-value=1e+02 Score=28.87 Aligned_cols=51 Identities=20% Similarity=0.117 Sum_probs=38.6
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC--------------C----HHHHHHHHHcCCEEEE
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM--------------S----LERRIILRAFGAELVL 74 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~--------------~----~~~~~~~~~~Ga~v~~ 74 (278)
..++.-.+|-.|.+.|...++.|.++++|-.... + ...++.++.+|.+++.
T Consensus 144 ~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~ 212 (471)
T PRK12810 144 KKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRT 212 (471)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEe
Confidence 3578888999999999999999999998854321 1 1245667888988764
No 402
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=47.55 E-value=1.9e+02 Score=25.75 Aligned_cols=56 Identities=14% Similarity=0.103 Sum_probs=35.1
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCe-EEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 19 ITPGESVLIEPTSGNTGIGLAFMAAAKQYR-LIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 19 l~~g~~~vv~assGN~g~a~A~~a~~~G~~-~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
+.|+ .|+...++..++.++..+- .+-. -.|+++...-..-....+.+|++++.++-
T Consensus 72 ~~~~--~I~~~~Gs~e~i~~~~~~~-~~~g~~~vli~~P~y~~y~~~~~~~G~~~~~v~~ 128 (351)
T PRK01688 72 VKPE--QVLVSRGADEGIELLIRAF-CEPGKDAILYCPPTYGMYSVSAETIGVEIRTVPT 128 (351)
T ss_pred CCHH--HEEEcCCHHHHHHHHHHHh-cCCCCCEEEEcCCCHHHHHHHHHHcCCEEEEeec
Confidence 3553 4666777788777776553 2221 34555544444556667889999998875
No 403
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=47.55 E-value=1.7e+02 Score=24.43 Aligned_cols=52 Identities=10% Similarity=0.096 Sum_probs=35.3
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEe
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLT 75 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~ 75 (278)
..+|+..+|.-|.+++..-...|.+++++.+.... +.-...++..|.++..+
T Consensus 13 ~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~ 65 (255)
T PRK06113 13 CAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFAC 65 (255)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEE
Confidence 67888899999999999988899987776543211 11223445567666544
No 404
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=47.50 E-value=1.2e+02 Score=25.04 Aligned_cols=53 Identities=26% Similarity=0.277 Sum_probs=36.6
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTD 76 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~--~~~~~~~~~~Ga~v~~~~ 76 (278)
..+|+..+|.-|.++|..-.+.|.++++....+.. ......++..+.+++.+.
T Consensus 4 ~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (248)
T PRK06947 4 VVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVA 58 (248)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 56888889999999999988899887665433211 223345566777766554
No 405
>PRK07677 short chain dehydrogenase; Provisional
Probab=47.49 E-value=1.6e+02 Score=24.39 Aligned_cols=53 Identities=19% Similarity=0.222 Sum_probs=34.3
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 76 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~ 76 (278)
+.+|+..+|.-|.++|......|.+++++-..... ......++..+.+++.+.
T Consensus 3 ~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 56 (252)
T PRK07677 3 VVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQ 56 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 57888888999999999998999976665433211 112233444565655443
No 406
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=47.39 E-value=85 Score=23.21 Aligned_cols=47 Identities=17% Similarity=0.020 Sum_probs=18.4
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023695 26 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 72 (278)
Q Consensus 26 vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v 72 (278)
++.+..-.+...+--.|..+|++.+++.|....+.-++.++..|.++
T Consensus 59 avv~~~~~~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~v 105 (116)
T PF13380_consen 59 AVVCVPPDKVPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIRV 105 (116)
T ss_dssp EEE-S-HHHHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-EE
T ss_pred EEEEcCHHHHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCEE
Confidence 33334334444444444445555555555544444444444444443
No 407
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=47.35 E-value=2.1e+02 Score=25.63 Aligned_cols=59 Identities=24% Similarity=0.251 Sum_probs=40.2
Q ss_pred cCCCCCCCeEEEEeCCC--hHHHHHHHHHHHcCCeEEEEeCCCC--CHHHHH----HHHHcCCEEEEeC
Q 023695 16 KGLITPGESVLIEPTSG--NTGIGLAFMAAAKQYRLIITMPASM--SLERRI----ILRAFGAELVLTD 76 (278)
Q Consensus 16 ~g~l~~g~~~vv~assG--N~g~a~A~~a~~~G~~~~vv~p~~~--~~~~~~----~~~~~Ga~v~~~~ 76 (278)
.|.++ | .+|+-.+.+ |.++|++..++++|++++++.|+.. ++..++ ..+..|.++...+
T Consensus 150 ~g~l~-g-~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (331)
T PRK02102 150 FGPLK-G-LKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITE 216 (331)
T ss_pred hCCCC-C-CEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEc
Confidence 46553 3 334444554 8999999999999999999999864 222332 2345788887765
No 408
>PRK06500 short chain dehydrogenase; Provisional
Probab=47.29 E-value=1.6e+02 Score=24.21 Aligned_cols=49 Identities=18% Similarity=0.125 Sum_probs=34.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHH-HHHHcCCEEEEe
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI-ILRAFGAELVLT 75 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~-~~~~~Ga~v~~~ 75 (278)
..+|+..+|..|.+++..-...|.+++++... ..+.. ..+..|.++..+
T Consensus 8 ~vlItGasg~iG~~la~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~~ 57 (249)
T PRK06500 8 TALITGGTSGIGLETARQFLAEGARVAITGRD---PASLEAARAELGESALVI 57 (249)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEecCC---HHHHHHHHHHhCCceEEE
Confidence 67888999999999999999999987665432 22322 334457766544
No 409
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=47.19 E-value=1.7e+02 Score=24.39 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=27.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 55 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~ 55 (278)
..+|+.++|--|.++|..-...|.+++++...
T Consensus 8 ~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~ 39 (257)
T PRK07067 8 VALLTGAASGIGEAVAERYLAEGARVVIADIK 39 (257)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEEEcCC
Confidence 67899999999999999999999987776443
No 410
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=47.13 E-value=1.5e+02 Score=26.89 Aligned_cols=50 Identities=12% Similarity=0.067 Sum_probs=34.7
Q ss_pred EEeCCChHHHHHHHHHHH-cCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023695 27 IEPTSGNTGIGLAFMAAA-KQYRLIITMPASMSLERRIILRAFGAELVLTD 76 (278)
Q Consensus 27 v~assGN~g~a~A~~a~~-~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~ 76 (278)
+..+++.+|+.++..+-. +.---.|++|.-.-..-...++.+|++++.++
T Consensus 98 ~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g~~~v~v~ 148 (396)
T PRK09257 98 VQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAGLEVKTYP 148 (396)
T ss_pred EecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcCCcEEEEe
Confidence 667777888888864322 12223566777666666788889999999886
No 411
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=47.05 E-value=1e+02 Score=28.94 Aligned_cols=51 Identities=22% Similarity=0.246 Sum_probs=37.7
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC---------C---------HHHHHHHHHcCCEEEE
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM---------S---------LERRIILRAFGAELVL 74 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~---------~---------~~~~~~~~~~Ga~v~~ 74 (278)
..++.-.+|-.|.+.|..+++.|.+++++-.... + ....+.++.+|.+++.
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 210 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHL 210 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEEC
Confidence 4588889999999999999999999888743221 1 1345667778887753
No 412
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=46.78 E-value=2.4e+02 Score=29.52 Aligned_cols=32 Identities=13% Similarity=0.009 Sum_probs=27.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 55 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~ 55 (278)
..|+.-.+|-.|++.|+..++.|++++||=..
T Consensus 431 ~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~ 462 (1006)
T PRK12775 431 GKVAICGSGPAGLAAAADLVKYGVDVTVYEAL 462 (1006)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Confidence 35788899999999999999999999999543
No 413
>PRK06198 short chain dehydrogenase; Provisional
Probab=46.54 E-value=1.7e+02 Score=24.31 Aligned_cols=53 Identities=17% Similarity=0.173 Sum_probs=36.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH--HHHHHHHHcCCEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--ERRIILRAFGAELVLTD 76 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~--~~~~~~~~~Ga~v~~~~ 76 (278)
..+|+..+|.-|..+|......|.+.++++..+... .....++..+.++..+.
T Consensus 8 ~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~ 62 (260)
T PRK06198 8 VALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQ 62 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 578888889999999999999999844444443221 22334566788775543
No 414
>PRK07985 oxidoreductase; Provisional
Probab=46.51 E-value=1.8e+02 Score=25.11 Aligned_cols=53 Identities=17% Similarity=0.184 Sum_probs=35.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC-CCC--HHHHHHHHHcCCEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA-SMS--LERRIILRAFGAELVLTD 76 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~-~~~--~~~~~~~~~~Ga~v~~~~ 76 (278)
..||+..+|.-|.++|..-...|.++++.-.. +.. +.....++..|.+++.+.
T Consensus 51 ~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (294)
T PRK07985 51 KALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLP 106 (294)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEE
Confidence 67999999999999999999999998765332 111 112223445676665443
No 415
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=46.30 E-value=65 Score=28.19 Aligned_cols=72 Identities=24% Similarity=0.279 Sum_probs=48.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHH-HHHHHcCC-E-EEEeCCC-CChHHHHHHHHHHHHhC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR-IILRAFGA-E-LVLTDPA-KGMKGAVQKAEEILAKT 95 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~-~~~~~~Ga-~-v~~~~~~-~~~~~~~~~a~~~~~~~ 95 (278)
..+||..|+--|.++|+.=.+.|.+.+++........++ +.++..++ + ++...-+ .+.+++.+.....-++.
T Consensus 14 vVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f 89 (282)
T KOG1205|consen 14 VVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF 89 (282)
T ss_pred EEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence 578888888899999999999999999999876666666 66666654 3 4433321 23344444443333343
No 416
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=46.22 E-value=1.6e+02 Score=24.26 Aligned_cols=53 Identities=13% Similarity=0.224 Sum_probs=35.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHH-HHHHHHcCCEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLER-RIILRAFGAELVLTD 76 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~-~~~~~~~Ga~v~~~~ 76 (278)
+.||+..+|-.|.+++..-.+.|.+++++........+ ...++..+.++..+.
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 56 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLV 56 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 57888889999999999988889987777554321111 223344566665543
No 417
>PRK08068 transaminase; Reviewed
Probab=46.14 E-value=1.1e+02 Score=27.59 Aligned_cols=57 Identities=11% Similarity=-0.058 Sum_probs=35.6
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 19 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 19 l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
+.|+. .|+..++|..+..++..+ ..+-.-.|++|.-.-..-...++.+|++++.++-
T Consensus 91 ~~~~~-~i~it~G~~~~l~~~~~~-~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~ 147 (389)
T PRK08068 91 LDPET-EVAILFGGKAGLVELPQC-LMNPGDTILVPDPGYPDYLSGVALARAQFETMPL 147 (389)
T ss_pred CCCCc-cEEEcCCcHHHHHHHHHH-hCCCCCEEEEcCCCCcchHHHHHhcCCEEEEeec
Confidence 44431 366667777777665443 3333345667765555556667889999988874
No 418
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=46.12 E-value=1.2e+02 Score=27.32 Aligned_cols=52 Identities=17% Similarity=0.006 Sum_probs=32.3
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 25 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
.|+..+++..++.++..+- ++-.-.|++|...-..-....+.+|++++.++-
T Consensus 93 ~vi~t~G~~~~l~~~~~~~-~~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~ 144 (383)
T TIGR03540 93 EVLSLIGSKEGIAHIPLAF-VNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPL 144 (383)
T ss_pred eEEECCCcHHHHHHHHHHh-CCCCCEEEEeCCCCcchHHHHHhcCCEEEEEec
Confidence 3665566677777765543 232234555554444445567889999998864
No 419
>PRK09072 short chain dehydrogenase; Provisional
Probab=46.10 E-value=1.6e+02 Score=24.65 Aligned_cols=32 Identities=34% Similarity=0.357 Sum_probs=27.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 55 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~ 55 (278)
..+|+.++|-.|.+++......|.+++++...
T Consensus 7 ~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~ 38 (263)
T PRK09072 7 RVLLTGASGGIGQALAEALAAAGARLLLVGRN 38 (263)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEECC
Confidence 67888889999999999998999987776543
No 420
>PRK06138 short chain dehydrogenase; Provisional
Probab=46.04 E-value=1.7e+02 Score=24.12 Aligned_cols=70 Identities=9% Similarity=0.079 Sum_probs=40.7
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAK 94 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 94 (278)
+.+|+..+|-.|.++|..-...|.+++++...... ......++ .+.++..+..+ .+.+...+...++.++
T Consensus 7 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~i~~~ 78 (252)
T PRK06138 7 VAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AGGRAFARQGDVGSAEAVEALVDFVAAR 78 (252)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 67899999999999999888889887666533211 11222333 46666544321 2333334444444443
No 421
>PRK05872 short chain dehydrogenase; Provisional
Probab=46.04 E-value=1.9e+02 Score=24.92 Aligned_cols=68 Identities=16% Similarity=0.178 Sum_probs=41.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHH-HHc--CCEEEE--eCCCCChHHHHHHHHHHHHh
Q 023695 23 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIIL-RAF--GAELVL--TDPAKGMKGAVQKAEEILAK 94 (278)
Q Consensus 23 ~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~-~~~--Ga~v~~--~~~~~~~~~~~~~a~~~~~~ 94 (278)
...+|+..+|.-|.++|......|.+++++-.. ..+++.+ +.+ +.+++. ++- .+.++..+...+..++
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~l~~~~~~l~~~~~~~~~~~Dv-~d~~~v~~~~~~~~~~ 82 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHARGAKLALVDLE---EAELAALAAELGGDDRVLTVVADV-TDLAAMQAAAEEAVER 82 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhcCCCcEEEEEecC-CCHHHHHHHHHHHHHH
Confidence 367899999999999999999999876665432 2333322 233 345554 443 2334444444555444
No 422
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=45.82 E-value=86 Score=26.73 Aligned_cols=52 Identities=15% Similarity=-0.043 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHc-CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 023695 4 KIGYSMISDAEAK-GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 55 (278)
Q Consensus 4 R~a~~~l~~a~~~-g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~ 55 (278)
+++.+.+..+.+. +.-...+.+++.-..||-|..+|..-..+|.+++.+...
T Consensus 12 ~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~ 64 (244)
T PF00208_consen 12 YGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDS 64 (244)
T ss_dssp HHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 4566677777665 332233457888888999999999999999888887543
No 423
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=45.82 E-value=1.8e+02 Score=24.35 Aligned_cols=67 Identities=16% Similarity=0.206 Sum_probs=40.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHH-HHcCCEEEE--eCCCCChHHHHHHHHHHHHh
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIIL-RAFGAELVL--TDPAKGMKGAVQKAEEILAK 94 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~-~~~Ga~v~~--~~~~~~~~~~~~~a~~~~~~ 94 (278)
..||+..+|--|.++|......|.+++++-.. ..+.+.+ +.++.++.. ++- .+.+...+...+..++
T Consensus 8 ~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~D~-~~~~~~~~~~~~~~~~ 77 (263)
T PRK06200 8 VALITGGGSGIGRALVERFLAEGARVAVLERS---AEKLASLRQRFGDHVLVVEGDV-TSYADNQRAVDQTVDA 77 (263)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhCCcceEEEccC-CCHHHHHHHHHHHHHh
Confidence 67888888999999999999999987665432 2333333 234544433 332 2333444444444444
No 424
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=45.76 E-value=1.6e+02 Score=27.90 Aligned_cols=90 Identities=16% Similarity=0.159 Sum_probs=55.5
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 103 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 103 (278)
++++....|+-|+.+|..++.+|.+++++-+. +.+.......|+++.. +++ +.++. +.+....
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~d---p~~a~~A~~~G~~~~~------lee-------ll~~A-DIVI~at 317 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEID---PICALQAAMEGYQVVT------LED-------VVETA-DIFVTAT 317 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC---chhHHHHHhcCceecc------HHH-------HHhcC-CEEEECC
Confidence 56888899999999999999999986555322 2222223345776531 222 22333 4444432
Q ss_pred CCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCc
Q 023695 104 FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGG 140 (278)
Q Consensus 104 ~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg 140 (278)
. + ...+..|.++++ ++..+++-+|-+-
T Consensus 318 G-t-------~~iI~~e~~~~M--KpGAiLINvGr~d 344 (476)
T PTZ00075 318 G-N-------KDIITLEHMRRM--KNNAIVGNIGHFD 344 (476)
T ss_pred C-c-------ccccCHHHHhcc--CCCcEEEEcCCCc
Confidence 1 1 123455777777 4688999999884
No 425
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=45.75 E-value=93 Score=28.55 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=13.8
Q ss_pred HHHHHhhhCCCCCEEEEecCCCccH
Q 023695 118 GPELWKGSGGRIDALVSGIGTGGTI 142 (278)
Q Consensus 118 ~~EI~~ql~~~~d~iv~~vG~Gg~~ 142 (278)
+.++.++. ++| +|+++|+|+.+
T Consensus 98 ~~~~~r~~--~~D-~IiavGGGS~i 119 (395)
T PRK15454 98 AVAQLRES--GCD-GVIAFGGGSVL 119 (395)
T ss_pred HHHHHHhc--CcC-EEEEeCChHHH
Confidence 44555553 577 66788887654
No 426
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=45.71 E-value=1.7e+02 Score=24.14 Aligned_cols=53 Identities=15% Similarity=0.140 Sum_probs=36.5
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 76 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~ 76 (278)
+.+|+..+|.-|.++|......|.+++++-..... ....+.++..|.++..+.
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~ 55 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYK 55 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 46888889999999999999999987666433211 223345566787766554
No 427
>PLN02583 cinnamoyl-CoA reductase
Probab=45.48 E-value=1.2e+02 Score=26.21 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=28.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 023695 23 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 55 (278)
Q Consensus 23 ~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~ 55 (278)
...+|+..+|-.|..++......|.+++++...
T Consensus 7 k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~ 39 (297)
T PLN02583 7 KSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQK 39 (297)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 367899999999999999999999999888764
No 428
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=45.39 E-value=1.8e+02 Score=30.40 Aligned_cols=31 Identities=10% Similarity=0.112 Sum_probs=27.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 54 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p 54 (278)
+.|+.-.+|-.|.++|++.++.|.++++|=.
T Consensus 384 KKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~ 414 (1028)
T PRK06567 384 YNILVTGLGPAGFSLSYYLLRSGHNVTAIDG 414 (1028)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCeEEEEcc
Confidence 4588889999999999999999999999954
No 429
>PRK07774 short chain dehydrogenase; Provisional
Probab=45.31 E-value=1.7e+02 Score=24.05 Aligned_cols=32 Identities=13% Similarity=0.163 Sum_probs=27.3
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 55 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~ 55 (278)
+.||+.++|--|.+++......|.+++++...
T Consensus 8 ~vlItGasg~iG~~la~~l~~~g~~vi~~~r~ 39 (250)
T PRK07774 8 VAIVTGAAGGIGQAYAEALAREGASVVVADIN 39 (250)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 67899999999999999999999988776543
No 430
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=45.31 E-value=1e+02 Score=26.97 Aligned_cols=48 Identities=23% Similarity=0.266 Sum_probs=30.4
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023695 21 PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 71 (278)
Q Consensus 21 ~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~ 71 (278)
++.+.+|.+ +|..|.+++..++.+|.+.++++.. ++.+...++.+|++
T Consensus 165 ~~~~VLI~g-~g~vG~~~~~lak~~G~~~v~~~~~--s~~~~~~~~~~g~~ 212 (339)
T cd08232 165 AGKRVLVTG-AGPIGALVVAAARRAGAAEIVATDL--ADAPLAVARAMGAD 212 (339)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCC
Confidence 565666654 6788888888888888843333322 34555566667763
No 431
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=45.28 E-value=1.8e+02 Score=24.19 Aligned_cols=148 Identities=18% Similarity=0.156 Sum_probs=73.6
Q ss_pred HHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC---------------C-----HHHHHHHHH
Q 023695 8 SMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM---------------S-----LERRIILRA 67 (278)
Q Consensus 8 ~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~---------------~-----~~~~~~~~~ 67 (278)
..+..+.+++. ..|+...+......++-.+...+++.+.+..... + ..-.+.+..
T Consensus 57 ~~~~~l~~~~v-----~~iig~~~~~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (298)
T cd06268 57 AAARELVDDGV-----DAVIGPLSSGVALAAAPVAEEAGVPLISPGATSPALTGKGNPYVFRTAPSDAQQAAALADYLAE 131 (298)
T ss_pred HHHHHHHhCCc-----eEEEcCCcchhHHhhHHHHHhCCCcEEccCCCCcccccCCCceEEEcccCcHHHHHHHHHHHHH
Confidence 34455555554 5566555455556677788888888766532110 0 111234444
Q ss_pred cC--CEEEEeCCCCChH-HHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHH
Q 023695 68 FG--AELVLTDPAKGMK-GAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITG 144 (278)
Q Consensus 68 ~G--a~v~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aG 144 (278)
.+ -+|..+.....+. ...+..++..++. +.-.+....-+.. ..-+.....+|.. ..+|.|++. +.+....+
T Consensus 132 ~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~-g~~i~~~~~~~~~-~~~~~~~~~~l~~---~~~~~vi~~-~~~~~~~~ 205 (298)
T cd06268 132 KGKVKKVAIIYDDYAYGRGLAAAFREALKKL-GGEVVAEETYPPG-ATDFSPLIAKLKA---AGPDAVFLA-GYGGDAAL 205 (298)
T ss_pred hcCCCEEEEEEcCCchhHHHHHHHHHHHHHc-CCEEEEEeccCCC-CccHHHHHHHHHh---cCCCEEEEc-cccchHHH
Confidence 44 5666654322222 2223333333443 2211111100000 0112222223322 357877766 45577788
Q ss_pred HHHHHHhhCCCcEEEEEecCCC
Q 023695 145 AGKFLKEKNPNIKLYGIEPTES 166 (278)
Q Consensus 145 i~~~~k~~~~~~~vigV~~~~~ 166 (278)
+.+.++..+.++++++......
T Consensus 206 ~~~~~~~~g~~~~~~~~~~~~~ 227 (298)
T cd06268 206 FLKQAREAGLKVPIVGGDGAAA 227 (298)
T ss_pred HHHHHHHcCCCCcEEecCccCC
Confidence 9999988877788887764443
No 432
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=45.23 E-value=93 Score=27.91 Aligned_cols=52 Identities=19% Similarity=0.223 Sum_probs=36.0
Q ss_pred EEEEeCCC--hHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHH----HHHHcCCEEEEeC
Q 023695 25 VLIEPTSG--NTGIGLAFMAAAKQYRLIITMPASMS--LERRI----ILRAFGAELVLTD 76 (278)
Q Consensus 25 ~vv~assG--N~g~a~A~~a~~~G~~~~vv~p~~~~--~~~~~----~~~~~Ga~v~~~~ 76 (278)
+|.-.+.+ |.++|+..+++++|++++++.|+... ...+. ..+..|+++...+
T Consensus 158 ~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~ 217 (334)
T PRK01713 158 SYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTD 217 (334)
T ss_pred EEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 34444443 68999999999999999999998642 22222 2345788887765
No 433
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=45.16 E-value=1.2e+02 Score=22.22 Aligned_cols=66 Identities=17% Similarity=0.155 Sum_probs=33.1
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCC-ChHHHHHHHHHHHHhC
Q 023695 26 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK-GMKGAVQKAEEILAKT 95 (278)
Q Consensus 26 vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~~ 95 (278)
++...+|++++.+|.+ +-..|.+++.|... .-.++.-.+|..-+..+... +.++..+.+.+.+.+.
T Consensus 21 vv~T~sG~ta~~isk~--RP~~pIiavt~~~~--~~r~l~l~~GV~p~~~~~~~~~~~~~~~~a~~~~~~~ 87 (117)
T PF02887_consen 21 VVFTESGRTARLISKY--RPKVPIIAVTPNES--VARQLSLYWGVYPVLIEEFDKDTEELIAEALEYAKER 87 (117)
T ss_dssp EEE-SSSHHHHHHHHT---TSSEEEEEESSHH--HHHHGGGSTTEEEEECSSHSHSHHHHHHHHHHHHHHT
T ss_pred EEECCCchHHHHHHhh--CCCCeEEEEcCcHH--HHhhhhcccceEEEEeccccccHHHHHHHHHHHHHHc
Confidence 3333457777666544 23456666655531 22222234576666666533 4455555555555543
No 434
>PLN02494 adenosylhomocysteinase
Probab=45.12 E-value=71 Score=30.15 Aligned_cols=90 Identities=17% Similarity=0.175 Sum_probs=55.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 103 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 103 (278)
++++....|+-|+++|..++.+|.+++++=. ++.+.......|.++. + .++ ..++. +.++...
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~---dp~r~~eA~~~G~~vv--~----leE-------al~~A-DVVI~tT 317 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEI---DPICALQALMEGYQVL--T----LED-------VVSEA-DIFVTTT 317 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeC---CchhhHHHHhcCCeec--c----HHH-------HHhhC-CEEEECC
Confidence 5688899999999999999999998555422 2333344556677753 1 222 22232 4343211
Q ss_pred CCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCc
Q 023695 104 FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGG 140 (278)
Q Consensus 104 ~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg 140 (278)
. + ...+..+.++++ ++..+++-+|..+
T Consensus 318 G-t-------~~vI~~e~L~~M--K~GAiLiNvGr~~ 344 (477)
T PLN02494 318 G-N-------KDIIMVDHMRKM--KNNAIVCNIGHFD 344 (477)
T ss_pred C-C-------ccchHHHHHhcC--CCCCEEEEcCCCC
Confidence 1 1 123446677777 4678888888854
No 435
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=45.08 E-value=2e+02 Score=24.78 Aligned_cols=52 Identities=27% Similarity=0.291 Sum_probs=36.9
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023695 17 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 72 (278)
Q Consensus 17 g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v 72 (278)
+.+.++...+|...+|..|.++...++..|.+.+++.+ ..+...++.+|+..
T Consensus 135 ~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~v~~~~~----~~~~~~~~~~g~~~ 186 (331)
T cd08273 135 AKVLTGQRVLIHGASGGVGQALLELALLAGAEVYGTAS----ERNHAALRELGATP 186 (331)
T ss_pred cCCCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC----HHHHHHHHHcCCeE
Confidence 45677766566555689999999999999987655543 35566667788754
No 436
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=44.93 E-value=1.6e+02 Score=27.86 Aligned_cols=22 Identities=9% Similarity=0.116 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHcCCeEEEEeCC
Q 023695 34 TGIGLAFMAAAKQYRLIITMPA 55 (278)
Q Consensus 34 ~g~a~A~~a~~~G~~~~vv~p~ 55 (278)
.+.+....|..++.+++|+...
T Consensus 361 ia~~a~~~a~~~~akaIVv~T~ 382 (473)
T TIGR01064 361 IALSAVEAAEKLDAKAIVVLTE 382 (473)
T ss_pred HHHHHHHHHhhcCCCEEEEEcC
Confidence 3444445566677776666543
No 437
>PRK09291 short chain dehydrogenase; Provisional
Probab=44.91 E-value=99 Score=25.70 Aligned_cols=32 Identities=22% Similarity=0.250 Sum_probs=28.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 55 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~ 55 (278)
+.+|+..+|..|.+++......|.++++....
T Consensus 4 ~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~ 35 (257)
T PRK09291 4 TILITGAGSGFGREVALRLARKGHNVIAGVQI 35 (257)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 57899999999999999999999998887654
No 438
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=44.83 E-value=70 Score=28.98 Aligned_cols=53 Identities=19% Similarity=0.195 Sum_probs=36.5
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 25 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
..+..++|..|..++..+-.++-.-.|++|..+-......++..|++++.++-
T Consensus 50 ~~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~v~vd~ 102 (379)
T PRK11658 50 HAIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMIVLLGATPVMVDV 102 (379)
T ss_pred eEEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHHHHcCCEEEEEec
Confidence 45666777777777665532322346777876666667778889999999874
No 439
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=44.75 E-value=1.4e+02 Score=26.05 Aligned_cols=32 Identities=9% Similarity=0.121 Sum_probs=22.6
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC
Q 023695 25 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS 56 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~ 56 (278)
+++.-.+|-.++|++++....|++-+.++.++
T Consensus 126 ~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt 157 (288)
T PRK12749 126 TMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR 157 (288)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 45555667778999888888888665555544
No 440
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=44.71 E-value=1.8e+02 Score=24.06 Aligned_cols=53 Identities=25% Similarity=0.322 Sum_probs=36.6
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTD 76 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~--~~~~~~~~~~Ga~v~~~~ 76 (278)
..+|+..+|.-|.++|..-...|.+++++...... ......++..+.++..+.
T Consensus 4 ~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 58 (256)
T PRK12745 4 VALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFP 58 (256)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEE
Confidence 46888999999999999988889988777543321 223444555666665543
No 441
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=44.62 E-value=53 Score=22.92 Aligned_cols=33 Identities=9% Similarity=0.138 Sum_probs=24.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM 57 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~ 57 (278)
..++.+.+|+.+...|...+.+|++ +.++..+.
T Consensus 58 ~iv~~c~~G~rs~~aa~~L~~~G~~-v~~l~GG~ 90 (95)
T cd01534 58 RIVLADDDGVRADMTASWLAQMGWE-VYVLEGGL 90 (95)
T ss_pred eEEEECCCCChHHHHHHHHHHcCCE-EEEecCcH
Confidence 5566667788877777778889998 55566543
No 442
>PRK06180 short chain dehydrogenase; Provisional
Probab=44.40 E-value=1.9e+02 Score=24.45 Aligned_cols=31 Identities=32% Similarity=0.239 Sum_probs=26.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 54 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p 54 (278)
..+|+..+|--|.+++......|.+++++..
T Consensus 6 ~vlVtGasggiG~~la~~l~~~G~~V~~~~r 36 (277)
T PRK06180 6 TWLITGVSSGFGRALAQAALAAGHRVVGTVR 36 (277)
T ss_pred EEEEecCCChHHHHHHHHHHhCcCEEEEEeC
Confidence 5789999999999999999899999777654
No 443
>PRK07060 short chain dehydrogenase; Provisional
Probab=44.36 E-value=1.3e+02 Score=24.60 Aligned_cols=51 Identities=24% Similarity=0.180 Sum_probs=36.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHH-HHcCCEEEEeCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIIL-RAFGAELVLTDP 77 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~-~~~Ga~v~~~~~ 77 (278)
+.+|+..+|.-|..++......|.+++++... ..+.+.+ +..+.+++.++-
T Consensus 11 ~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~---~~~~~~~~~~~~~~~~~~D~ 62 (245)
T PRK07060 11 SVLVTGASSGIGRACAVALAQRGARVVAAARN---AAALDRLAGETGCEPLRLDV 62 (245)
T ss_pred EEEEeCCcchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhCCeEEEecC
Confidence 67888888999999999999999986665443 2333333 445777776664
No 444
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=44.35 E-value=2.2e+02 Score=24.90 Aligned_cols=51 Identities=22% Similarity=0.208 Sum_probs=33.0
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCe-EEEEeCCCCCHHHHHHHHHcCC
Q 023695 16 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYR-LIITMPASMSLERRIILRAFGA 70 (278)
Q Consensus 16 ~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~-~~vv~p~~~~~~~~~~~~~~Ga 70 (278)
...++++++.+|. .+|..|.++...|+.+|++ +++..+. ..+...++.+|+
T Consensus 154 ~~~~~~~~~vlI~-g~g~~g~~~~~lA~~~G~~~v~~~~~~---~~~~~~l~~~g~ 205 (343)
T cd08236 154 LAGITLGDTVVVI-GAGTIGLLAIQWLKILGAKRVIAVDID---DEKLAVARELGA 205 (343)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcCC---HHHHHHHHHcCC
Confidence 3446677666666 4688888888888888887 4444222 345556666666
No 445
>PRK13984 putative oxidoreductase; Provisional
Probab=44.33 E-value=1e+02 Score=29.93 Aligned_cols=51 Identities=20% Similarity=0.285 Sum_probs=37.5
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC--------------C----HHHHHHHHHcCCEEEE
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM--------------S----LERRIILRAFGAELVL 74 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~--------------~----~~~~~~~~~~Ga~v~~ 74 (278)
..++.-.+|-.|.+.|...++.|++++|+=.+.. + ....+.++.+|.+++.
T Consensus 284 ~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~ 352 (604)
T PRK13984 284 KKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHL 352 (604)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEEC
Confidence 3466667999999999999999999998843221 1 2345677888988754
No 446
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=44.31 E-value=1.5e+02 Score=26.26 Aligned_cols=52 Identities=6% Similarity=-0.180 Sum_probs=32.5
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCe---EEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 25 VLIEPTSGNTGIGLAFMAAAKQYR---LIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~~~G~~---~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
.|+..+++..+.-++..+- ++-. -.|++|...-..-...++.+|++++.++-
T Consensus 62 ~Iiit~Gs~~ai~~~~~~~-~~~g~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~v~~ 116 (350)
T TIGR03537 62 QVLPSAGSKEAIFHFPLVF-IDPEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKL 116 (350)
T ss_pred cEEEcCChHHHHHHHHHHH-cCCCCCCceEEEcCCCCcchHHHHHhcCCEEEEccc
Confidence 4666666666665544322 3321 26666665555666677889999998874
No 447
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=44.26 E-value=98 Score=28.50 Aligned_cols=45 Identities=11% Similarity=0.077 Sum_probs=34.0
Q ss_pred ChHHHHHHHHHHHcCCeEEEEeCCCC--CHHHHHH----HHHcCCEEEEeC
Q 023695 32 GNTGIGLAFMAAAKQYRLIITMPASM--SLERRII----LRAFGAELVLTD 76 (278)
Q Consensus 32 GN~g~a~A~~a~~~G~~~~vv~p~~~--~~~~~~~----~~~~Ga~v~~~~ 76 (278)
.|.++|++.+++++|++++++-|+.. .+..++. .+..|..+....
T Consensus 204 ~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~ 254 (395)
T PRK07200 204 LSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVN 254 (395)
T ss_pred chHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 37889999999999999999999854 3333333 456788887765
No 448
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=43.99 E-value=87 Score=28.31 Aligned_cols=82 Identities=21% Similarity=0.266 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHcCCEEE--EeCCCCChHHHHHHHHHHHHhCCCccccCCCCCC-CchhhhhhchHHHHHhhhCCCCCEE
Q 023695 56 SMSLERRIILRAFGAELV--LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENP-ANPKIHYETTGPELWKGSGGRIDAL 132 (278)
Q Consensus 56 ~~~~~~~~~~~~~Ga~v~--~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~g~~t~~~EI~~ql~~~~d~i 132 (278)
.+..+.-..++.+|++=+ ..++.-.--.....++...++. + +-+.-|++- .++..|.-+-+.|+.+. .++| .
T Consensus 56 gv~~Evg~dikn~gaKk~llvTDkni~~~~~~~~a~~~L~~~-~-I~~~vyD~v~~ePtv~s~~~alefak~--~~fD-s 130 (465)
T KOG3857|consen 56 GVLAEVGDDIKNLGAKKTLLVTDKNIAKLGLVKVAQDSLEEN-G-INVEVYDKVQPEPTVGSVTAALEFAKK--KNFD-S 130 (465)
T ss_pred hhHHHHHHHHHhcCccceEEeeCCChhhcccHHHHHHHHHHc-C-CceEEecCccCCCchhhHHHHHHHHHh--cccc-e
Confidence 344556667888888543 2332111112345555555554 2 222223321 12244667788888765 3566 5
Q ss_pred EEecCCCccH
Q 023695 133 VSGIGTGGTI 142 (278)
Q Consensus 133 v~~vG~Gg~~ 142 (278)
++++|+|+.+
T Consensus 131 ~vaiGGGSa~ 140 (465)
T KOG3857|consen 131 FVAIGGGSAH 140 (465)
T ss_pred EEEEcCcchh
Confidence 6778777654
No 449
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=43.96 E-value=1.1e+02 Score=28.89 Aligned_cols=51 Identities=18% Similarity=0.093 Sum_probs=37.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC--------------C----HHHHHHHHHcCCEEEE
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM--------------S----LERRIILRAFGAELVL 74 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~--------------~----~~~~~~~~~~Ga~v~~ 74 (278)
..++.-.+|-.|.+.|...++.|+++++|-.... + ...++.++.+|.+++.
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 212 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVT 212 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEEC
Confidence 3577788999999999999999999999853221 1 1234567778988764
No 450
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=43.65 E-value=1.6e+02 Score=23.13 Aligned_cols=28 Identities=25% Similarity=0.207 Sum_probs=17.6
Q ss_pred EEEeCC--ChHHHHHHHHHHHcCCeEEEEe
Q 023695 26 LIEPTS--GNTGIGLAFMAAAKQYRLIITM 53 (278)
Q Consensus 26 vv~ass--GN~g~a~A~~a~~~G~~~~vv~ 53 (278)
++..++ ||...+++-+-...++|+++++
T Consensus 62 v~~~~sG~gn~~~~l~~a~~~~~~Pvl~i~ 91 (157)
T TIGR03845 62 ILMQSSGLGNSINALASLNKTYGIPLPILA 91 (157)
T ss_pred EEEeCCcHHHHHHHHHHHHHcCCCCEEEEE
Confidence 444444 4655555555557788888888
No 451
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=43.57 E-value=1.6e+02 Score=28.14 Aligned_cols=104 Identities=26% Similarity=0.255 Sum_probs=64.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 103 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 103 (278)
+++..-.-|+-|+++|..++.+|++++++=|.. +..+ ...+|.+.. + .+ ++.++. +...++-
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~-~~~~---~~~~g~~~~--~----l~-------ell~~a-DiV~l~l 202 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYI-SPER---AAQLGVELV--S----LD-------ELLARA-DFITLHT 202 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC-ChhH---HHhcCCEEE--c----HH-------HHHhhC-CEEEEcc
Confidence 456667889999999999999999998886643 2222 234565432 1 22 233343 4444433
Q ss_pred CCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHH--HHHHHHHh
Q 023695 104 FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTIT--GAGKFLKE 151 (278)
Q Consensus 104 ~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~a--Gi~~~~k~ 151 (278)
-.++. -..-+..+.++++ +++.+++-+|.|+.+- .+..++++
T Consensus 203 P~t~~----t~~li~~~~l~~m--k~ga~lIN~aRG~~vde~aL~~aL~~ 246 (526)
T PRK13581 203 PLTPE----TRGLIGAEELAKM--KPGVRIINCARGGIIDEAALAEALKS 246 (526)
T ss_pred CCChH----hhcCcCHHHHhcC--CCCeEEEECCCCceeCHHHHHHHHhc
Confidence 22222 1233456788887 4789999999998864 44455554
No 452
>PHA02542 41 41 helicase; Provisional
Probab=43.52 E-value=2.9e+02 Score=26.12 Aligned_cols=40 Identities=13% Similarity=0.005 Sum_probs=23.4
Q ss_pred CCCCCCCeEEEEeCC--Ch--HHHHHHHHHHHcCCeEEEEeCCC
Q 023695 17 GLITPGESVLIEPTS--GN--TGIGLAFMAAAKQYRLIITMPAS 56 (278)
Q Consensus 17 g~l~~g~~~vv~ass--GN--~g~a~A~~a~~~G~~~~vv~p~~ 56 (278)
|-+.+|.-+++.+.. |= ++..+|..+.+.|.++.+|--+-
T Consensus 185 gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM 228 (473)
T PHA02542 185 GGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEM 228 (473)
T ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 556777666666633 54 44444555556787777664443
No 453
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=43.46 E-value=1.7e+02 Score=24.53 Aligned_cols=71 Identities=10% Similarity=0.056 Sum_probs=41.4
Q ss_pred eEEEEeCC--ChHHHHHHHHHHHcCCeEEEEeC----CCC----CH----HHHHHHHHcCCEEEEeCCC-CChHHHHHHH
Q 023695 24 SVLIEPTS--GNTGIGLAFMAAAKQYRLIITMP----ASM----SL----ERRIILRAFGAELVLTDPA-KGMKGAVQKA 88 (278)
Q Consensus 24 ~~vv~ass--GN~g~a~A~~a~~~G~~~~vv~p----~~~----~~----~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a 88 (278)
..||+..+ +.-|.++|......|.++++... ... .. ...+.++..|.+++.+.-+ .+.++..+..
T Consensus 8 ~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~i~~~~ 87 (256)
T PRK12859 8 VAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDAPKELL 87 (256)
T ss_pred EEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHH
Confidence 56777766 48999999999999998777521 110 11 1234456778887665432 2233334444
Q ss_pred HHHHHh
Q 023695 89 EEILAK 94 (278)
Q Consensus 89 ~~~~~~ 94 (278)
.++.++
T Consensus 88 ~~~~~~ 93 (256)
T PRK12859 88 NKVTEQ 93 (256)
T ss_pred HHHHHH
Confidence 444443
No 454
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=43.42 E-value=1.1e+02 Score=28.41 Aligned_cols=52 Identities=19% Similarity=0.084 Sum_probs=38.8
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCC-eEEEEeCCC-----CCHHHHHHHHHcCCEEEEe
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPAS-----MSLERRIILRAFGAELVLT 75 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~-~~~vv~p~~-----~~~~~~~~~~~~Ga~v~~~ 75 (278)
+.++.-.+||.|.-+|....++|. +++++.+.+ .....++.++..|.+++.-
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~i~~~ 331 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFEWL 331 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCEEEec
Confidence 357778899999999999999998 778776532 1344566777888887654
No 455
>PRK06202 hypothetical protein; Provisional
Probab=43.14 E-value=30 Score=28.86 Aligned_cols=37 Identities=16% Similarity=0.340 Sum_probs=27.8
Q ss_pred CEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCC
Q 023695 130 DALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTES 166 (278)
Q Consensus 130 d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~ 166 (278)
..+=+++|+|....-++..++..++..+|+|+++...
T Consensus 63 ~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~ 99 (232)
T PRK06202 63 TLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPR 99 (232)
T ss_pred EEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHH
Confidence 4666788888876666666666677789999998665
No 456
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=42.83 E-value=2e+02 Score=25.89 Aligned_cols=53 Identities=25% Similarity=0.342 Sum_probs=35.8
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 18 LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 18 ~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
.+++|...||...+|--|.++--.|+..|+ +.++. ..+.+++++++.+||+-+
T Consensus 154 ~~~~g~~vLv~ggsggVG~~aiQlAk~~~~-~~v~t--~~s~e~~~l~k~lGAd~v 206 (347)
T KOG1198|consen 154 KLSKGKSVLVLGGSGGVGTAAIQLAKHAGA-IKVVT--ACSKEKLELVKKLGADEV 206 (347)
T ss_pred ccCCCCeEEEEeCCcHHHHHHHHHHHhcCC-cEEEE--EcccchHHHHHHcCCcEe
Confidence 566776778888888888888888888883 22221 224466777888887543
No 457
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=42.80 E-value=1.9e+02 Score=26.27 Aligned_cols=52 Identities=15% Similarity=0.112 Sum_probs=32.8
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 25 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
.|+..+++..+..++..+-... .-.|++|...-..-...++.+|++++.++-
T Consensus 97 ~i~~t~G~~~al~~~~~~l~~~-gd~v~i~~P~y~~~~~~~~~~g~~v~~~~~ 148 (401)
T TIGR01264 97 DVVLCSGCSHAIEMCIAALANA-GQNILVPRPGFPLYETLAESMGIEVKLYNL 148 (401)
T ss_pred HEEECcChHHHHHHHHHHhCCC-CCEEEEeCCCChhHHHHHHHcCCEEEEeec
Confidence 4666777777776666543221 224555554444556677899999988753
No 458
>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=42.78 E-value=2.4e+02 Score=25.18 Aligned_cols=32 Identities=25% Similarity=0.325 Sum_probs=22.0
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC
Q 023695 25 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS 56 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~ 56 (278)
.+++..|.--|.++|.-|++-|-+++++..+.
T Consensus 36 i~itggS~glgl~la~e~~~~ga~Vti~ar~~ 67 (331)
T KOG1210|consen 36 ILITGGSSGLGLALALECKREGADVTITARSG 67 (331)
T ss_pred EEEecCcchhhHHHHHHHHHccCceEEEeccH
Confidence 45655555677777777888887777776543
No 459
>PRK12414 putative aminotransferase; Provisional
Probab=42.73 E-value=1.5e+02 Score=26.83 Aligned_cols=52 Identities=17% Similarity=-0.036 Sum_probs=30.6
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 25 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
.++..++|..++.++..+- ++=.-.|+++...-..-...++.+|++++.++-
T Consensus 92 ~i~it~g~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~ 143 (384)
T PRK12414 92 EVTVIASASEGLYAAISAL-VHPGDEVIYFEPSFDSYAPIVRLQGATPVAIKL 143 (384)
T ss_pred cEEEECChHHHHHHHHHHh-cCCCCEEEEeCCCccchHHHHHHcCCEEEEEec
Confidence 3666677777776665543 222223444543333345556778999988874
No 460
>PRK15063 isocitrate lyase; Provisional
Probab=42.69 E-value=1.7e+02 Score=27.24 Aligned_cols=66 Identities=20% Similarity=0.147 Sum_probs=36.5
Q ss_pred CCEEEEeCC-CCChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhh-----chHHHHHhhhCCCCCEEEEecC
Q 023695 69 GAELVLTDP-AKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYE-----TTGPELWKGSGGRIDALVSGIG 137 (278)
Q Consensus 69 Ga~v~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~-----t~~~EI~~ql~~~~d~iv~~vG 137 (278)
||++++++. ..+.+++.+.++.+....|...+........||..+.. +...|+ .++ .+.++|.|..
T Consensus 277 GAD~iw~Et~~~d~ee~~~fa~~v~~~~P~~~layn~sPsfnW~~~~~~~~~~~f~~eL-~~~--Gy~~~~~~la 348 (428)
T PRK15063 277 YADLIWCETSTPDLEEARRFAEAIHAKFPGKLLAYNCSPSFNWKKNLDDATIAKFQREL-GAM--GYKFQFITLA 348 (428)
T ss_pred CCCEEEeCCCCCCHHHHHHHHHhhcccCccceeecCCCCCcccccccCHHHHHHHHHHH-HHc--CceEEEechH
Confidence 999999984 55777777777766554454333332222233333321 222232 234 3788888863
No 461
>PRK05839 hypothetical protein; Provisional
Probab=42.53 E-value=2.5e+02 Score=25.16 Aligned_cols=57 Identities=12% Similarity=-0.089 Sum_probs=35.0
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHc-CCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 19 ITPGESVLIEPTSGNTGIGLAFMAAAK-QYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 19 l~~g~~~vv~assGN~g~a~A~~a~~~-G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
+.+ +.|+..+++..+..++..+-.+ +-.-.|++|.-.-..-...++.+|++++.++-
T Consensus 81 ~~~--~~I~it~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~ 138 (374)
T PRK05839 81 LKE--NELIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAIASRAKVLLMPL 138 (374)
T ss_pred CCc--ceEEEecCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhHHHHHhcCCEEEEeec
Confidence 455 3466666667666555444332 22245566655555556667889999999874
No 462
>PRK08265 short chain dehydrogenase; Provisional
Probab=42.42 E-value=2e+02 Score=24.05 Aligned_cols=49 Identities=12% Similarity=0.113 Sum_probs=33.3
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHH-HHHHHcCCEEEEe
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR-IILRAFGAELVLT 75 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~-~~~~~~Ga~v~~~ 75 (278)
..+|+..+|--|.++|......|.+++++-.. ..+. +..+..+.++..+
T Consensus 8 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~ 57 (261)
T PRK08265 8 VAIVTGGATLIGAAVARALVAAGARVAIVDID---ADNGAAVAASLGERARFI 57 (261)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhCCeeEEE
Confidence 67888888999999999999999987666332 2222 2233446555444
No 463
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=42.30 E-value=1.9e+02 Score=26.98 Aligned_cols=54 Identities=19% Similarity=0.022 Sum_probs=37.9
Q ss_pred eEEEEeCCChHHHHHHHHHHH------cCC--eEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAA------KQY--RLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~------~G~--~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
+.++..+||..+..+|+.+.. .++ .-.|++|..+-......+...|++++.++-
T Consensus 79 ~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdv 140 (438)
T PRK15407 79 RYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDV 140 (438)
T ss_pred CeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEec
Confidence 346777778888877776541 133 245777877777777788889999988874
No 464
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=42.26 E-value=1.3e+02 Score=26.68 Aligned_cols=93 Identities=13% Similarity=0.031 Sum_probs=54.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEe---CCCC-CHH----HHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITM---PASM-SLE----RRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKT 95 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~---p~~~-~~~----~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 95 (278)
+.++++ |- ++.|.++++|++.+-++ |+.. +.. -++.++..+..++++.+... .+.++.++++.
T Consensus 204 ~~~i~~----H~-af~Yf~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~----~~~~~~la~e~ 274 (311)
T PRK09545 204 KGYFVF----HD-AYGYFEKHYGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFR----PAVIESVAKGT 274 (311)
T ss_pred CcEEEE----Cc-hHHHHHHhCCCceeeeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCC----hHHHHHHHHhc
Confidence 446653 33 88999999999976554 3322 222 35677888999999987432 23445555554
Q ss_pred CC-ccccCCCCCCCch-hhhhhchHHHHHhhh
Q 023695 96 PN-AYMLQQFENPANP-KIHYETTGPELWKGS 125 (278)
Q Consensus 96 ~~-~~~~~~~~~~~~~-~~g~~t~~~EI~~ql 125 (278)
+- ...++++.+.... ...|..+..+..+++
T Consensus 275 g~~v~~ldpl~~~~~~~~~~Y~~~m~~n~~~l 306 (311)
T PRK09545 275 SVRMGTLDPLGTNIKLGKDSYSEFLSQLANQY 306 (311)
T ss_pred CCeEEEeccccccccCCHhHHHHHHHHHHHHH
Confidence 32 2345566543221 134655555555554
No 465
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=42.24 E-value=2.5e+02 Score=25.09 Aligned_cols=51 Identities=12% Similarity=0.011 Sum_probs=32.0
Q ss_pred EEEEeCCChHHHHHHHHHH-HcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 25 VLIEPTSGNTGIGLAFMAA-AKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~-~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
.|+..+++..++.++..+- .-| -.|+++...-+.-...++.+|++++.++-
T Consensus 86 ~I~it~G~~~~l~~~~~~~~~~g--d~vlv~~p~y~~~~~~~~~~g~~~~~vp~ 137 (369)
T PRK08153 86 NIMVGEGIDGLLGLIVRLYVEPG--DPVVTSLGAYPTFNYHVAGFGGRLVTVPY 137 (369)
T ss_pred HEEEcCCHHHHHHHHHHHhcCCC--CEEEECCCcchHHHHHHHHcCCeEEEeeC
Confidence 4676777777776665542 223 34555654444445567779999998874
No 466
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=42.18 E-value=53 Score=26.42 Aligned_cols=41 Identities=29% Similarity=0.386 Sum_probs=30.4
Q ss_pred chHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEe
Q 023695 116 TTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIE 162 (278)
Q Consensus 116 t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vigV~ 162 (278)
..+.++.+| +-.||.|+.=.|=|.++ .+|+.+|++++++..
T Consensus 55 ~a~~~L~~~-Gf~PDvI~~H~GWGe~L-----flkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 55 RAARQLRAQ-GFVPDVIIAHPGWGETL-----FLKDVFPDAPLIGYF 95 (171)
T ss_pred HHHHHHHHc-CCCCCEEEEcCCcchhh-----hHHHhCCCCcEEEEE
Confidence 344444444 45699998888877654 899999999999874
No 467
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=42.16 E-value=45 Score=21.99 Aligned_cols=27 Identities=22% Similarity=0.407 Sum_probs=22.2
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEeCCC
Q 023695 30 TSGNTGIGLAFMAAAKQYRLIITMPAS 56 (278)
Q Consensus 30 ssGN~g~a~A~~a~~~G~~~~vv~p~~ 56 (278)
.+|-.|.+.|+..++.|.+++|+=..+
T Consensus 3 GaG~sGl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 3 GAGISGLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp S-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred eeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence 578899999999999999999885443
No 468
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=41.89 E-value=1.4e+02 Score=23.58 Aligned_cols=42 Identities=12% Similarity=-0.029 Sum_probs=27.6
Q ss_pred CCCCeEEEEeCCCh-HHHHHHHHHHHcCCeEEEEeCCCCCHHH
Q 023695 20 TPGESVLIEPTSGN-TGIGLAFMAAAKQYRLIITMPASMSLER 61 (278)
Q Consensus 20 ~~g~~~vv~assGN-~g~a~A~~a~~~G~~~~vv~p~~~~~~~ 61 (278)
.++.+.|+-|.+|+ .+...+...+.+|++-+-++..+...++
T Consensus 114 ~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~ 156 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQ 156 (162)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHH
Confidence 34556667777787 4555666668999986666666654443
No 469
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=41.78 E-value=51 Score=27.27 Aligned_cols=55 Identities=18% Similarity=0.243 Sum_probs=38.8
Q ss_pred CCCCCCCeEEEEeCCCh----HHHHHHHHHHHc-CCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023695 17 GLITPGESVLIEPTSGN----TGIGLAFMAAAK-QYRLIITMPASMSLERRIILRAFGAE 71 (278)
Q Consensus 17 g~l~~g~~~vv~assGN----~g~a~A~~a~~~-G~~~~vv~p~~~~~~~~~~~~~~Ga~ 71 (278)
|-+.+|...+++...|. .+..+++.+.+. |-+|..+.-+..+..-++.++.+|.+
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d 73 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWD 73 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCc
Confidence 44566767888886664 777777777777 99998888777777788888888863
No 470
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=41.36 E-value=1.9e+02 Score=23.69 Aligned_cols=51 Identities=20% Similarity=0.193 Sum_probs=35.2
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEeC
Q 023695 26 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTD 76 (278)
Q Consensus 26 vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~--~~~~~~~~~~Ga~v~~~~ 76 (278)
+|+..+|.-|.++|....+.|.+++++...... ......++..+.++..+.
T Consensus 2 lItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 54 (239)
T TIGR01831 2 LVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQ 54 (239)
T ss_pred EEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 678888999999999999999997666543221 222344556677766554
No 471
>PRK07576 short chain dehydrogenase; Provisional
Probab=41.20 E-value=2.2e+02 Score=23.98 Aligned_cols=53 Identities=13% Similarity=0.088 Sum_probs=34.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 76 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~ 76 (278)
..+|+..+|.-|.++|......|.+++++-..... ......+...+.+++.+.
T Consensus 11 ~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 64 (264)
T PRK07576 11 NVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVS 64 (264)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEE
Confidence 67888889999999999888899987766543211 112234455566655443
No 472
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=41.11 E-value=1.2e+02 Score=27.36 Aligned_cols=52 Identities=21% Similarity=0.194 Sum_probs=36.7
Q ss_pred EEEEeCCC--hHHHHHHHHHHHcCCeEEEEeCCCCC--HHHH----HHHHHcCCEEEEeC
Q 023695 25 VLIEPTSG--NTGIGLAFMAAAKQYRLIITMPASMS--LERR----IILRAFGAELVLTD 76 (278)
Q Consensus 25 ~vv~assG--N~g~a~A~~a~~~G~~~~vv~p~~~~--~~~~----~~~~~~Ga~v~~~~ 76 (278)
+|.-.+.+ |.++|+..+++++|++++++.|+... ...+ ...+..|.++...+
T Consensus 158 ~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 217 (336)
T PRK03515 158 TLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTE 217 (336)
T ss_pred EEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEc
Confidence 34444443 78999999999999999999998642 2222 23455788887776
No 473
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=41.05 E-value=1.3e+02 Score=27.36 Aligned_cols=95 Identities=17% Similarity=0.142 Sum_probs=41.2
Q ss_pred CeEEEEeCCCCCHHHHHHHHHcCC-EEEEeCCCCChH-HHHHHHHHHHHhCCC-ccccCCC-CCCCchhhhhhchHHHHH
Q 023695 47 YRLIITMPASMSLERRIILRAFGA-ELVLTDPAKGMK-GAVQKAEEILAKTPN-AYMLQQF-ENPANPKIHYETTGPELW 122 (278)
Q Consensus 47 ~~~~vv~p~~~~~~~~~~~~~~Ga-~v~~~~~~~~~~-~~~~~a~~~~~~~~~-~~~~~~~-~~~~~~~~g~~t~~~EI~ 122 (278)
+|..++.-.+.-..--..++.+|. ++..+.+..... ...+...+..++.+- ....+.. .||.. . ...++.
T Consensus 5 ~p~~i~~G~g~l~~l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~--~----~v~~~~ 78 (377)
T cd08176 5 LPPTNLFGAGAIKEIGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTI--T----NVKDGL 78 (377)
T ss_pred CCCeEEECcCHHHHHHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCH--H----HHHHHH
Confidence 455555555544444455667774 555554322112 233344444443311 1111111 13331 1 223344
Q ss_pred hhhC-CCCCEEEEecCCCccHHHHHHHH
Q 023695 123 KGSG-GRIDALVSGIGTGGTITGAGKFL 149 (278)
Q Consensus 123 ~ql~-~~~d~iv~~vG~Gg~~aGi~~~~ 149 (278)
+++. .++| +|+++|+|+.+ =+++++
T Consensus 79 ~~~~~~~~D-~IIavGGGS~i-D~aK~i 104 (377)
T cd08176 79 AVFKKEGCD-FIISIGGGSPH-DCAKAI 104 (377)
T ss_pred HHHHhcCCC-EEEEeCCcHHH-HHHHHH
Confidence 4432 2577 56778877653 344443
No 474
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=40.96 E-value=2.1e+02 Score=23.76 Aligned_cols=33 Identities=18% Similarity=0.300 Sum_probs=21.0
Q ss_pred CCCEEEEecCCCccHHHHHHHHHhhCC----CcEEEEEe
Q 023695 128 RIDALVSGIGTGGTITGAGKFLKEKNP----NIKLYGIE 162 (278)
Q Consensus 128 ~~d~iv~~vG~Gg~~aGi~~~~k~~~~----~~~vigV~ 162 (278)
.||+||++- +..+.|+..++++.+. ++.|+|+.
T Consensus 177 ~~~ai~~~~--d~~a~g~~~~l~~~g~~ip~di~v~g~d 213 (268)
T cd06270 177 PFTAVFCAN--DEMAAGAISALREHGISVPQDVSIIGFD 213 (268)
T ss_pred CCCEEEEcC--cHHHHHHHHHHHHcCCCCCCceeEEEec
Confidence 467777664 4455678888877652 45566665
No 475
>PRK06290 aspartate aminotransferase; Provisional
Probab=40.92 E-value=1.7e+02 Score=26.91 Aligned_cols=52 Identities=8% Similarity=-0.026 Sum_probs=34.2
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 25 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
.|+.++++..++.++..+- ++-.-.|++|...-..-...++.+|++++.++-
T Consensus 108 ~I~it~Gs~~al~~~~~~~-~~~gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~ 159 (410)
T PRK06290 108 EVIHSIGSKPALAMLPSCF-INPGDVTLMTVPGYPVTGTHTKYYGGEVYNLPL 159 (410)
T ss_pred eEEEccCHHHHHHHHHHHh-CCCCCEEEEeCCCCccHHHHHHHcCCEEEEEec
Confidence 3666777788877766543 232234556655555556777889999999874
No 476
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=40.74 E-value=1.5e+02 Score=27.08 Aligned_cols=52 Identities=17% Similarity=0.112 Sum_probs=33.5
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 25 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
.|+..+++..++.++..+- .+-.-.|++|..+-..-...++.+|++++.++-
T Consensus 106 ~i~it~G~~~al~~~~~~~-~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~ 157 (412)
T PTZ00433 106 NVVLCSGVSHAILMALTAL-CDEGDNILVPAPGFPHYETVCKAYGIEMRFYNC 157 (412)
T ss_pred hEEEeCChHHHHHHHHHHh-cCCCCEEEEccCCcccHHHHHHHcCCEEEEEec
Confidence 4666777777777766653 222234555554444456668889999988864
No 477
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=40.61 E-value=2.2e+02 Score=23.84 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=23.5
Q ss_pred CCCEEEEecCCCccHHHHHHHHHhhC----CCcEEEEEe
Q 023695 128 RIDALVSGIGTGGTITGAGKFLKEKN----PNIKLYGIE 162 (278)
Q Consensus 128 ~~d~iv~~vG~Gg~~aGi~~~~k~~~----~~~~vigV~ 162 (278)
+||+||+. +...+.|+.+++++.+ .++.|+|++
T Consensus 180 ~~~ai~~~--~d~~a~g~~~~l~~~g~~vP~di~vvg~d 216 (269)
T cd06297 180 PPLAVFAS--ADQQALGALQEAVELGLTVGEDVRVVGFD 216 (269)
T ss_pred CCcEEEEc--CcHHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 47888877 3445668888888876 266787775
No 478
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=40.54 E-value=1.5e+02 Score=25.79 Aligned_cols=63 Identities=8% Similarity=0.033 Sum_probs=40.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEe---CCC-CCHH----HHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITM---PAS-MSLE----RRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKT 95 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~---p~~-~~~~----~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 95 (278)
+.+++.- -++.|.++.+|++.+-+. |+. .+.. -++.++..|..++++.+...- +.++.++++.
T Consensus 178 ~~~v~~H-----~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~----~~~~~ia~~~ 248 (287)
T cd01137 178 RKLVTSE-----GAFSYFAKAYGLKEAYLWPINTEEEGTPKQVATLIEQVKKEKVPAVFVESTVND----RLMKQVAKET 248 (287)
T ss_pred CEEEEec-----ccHHHHHHHcCCeEeecccCCCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCCh----HHHHHHHHHh
Confidence 3466553 278899999999987654 222 2232 355678899999999863321 3445566654
No 479
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=40.52 E-value=2.4e+02 Score=24.31 Aligned_cols=91 Identities=16% Similarity=0.129 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEeCCChH----HH-HHHHHHHHcCCeEEEEe--CCCCCHHHHHHHHHcCCEEEEeC
Q 023695 4 KIGYSMISDAEAKGLITPGESVLIEPTSGNT----GI-GLAFMAAAKQYRLIITM--PASMSLERRIILRAFGAELVLTD 76 (278)
Q Consensus 4 R~a~~~l~~a~~~g~l~~g~~~vv~assGN~----g~-a~A~~a~~~G~~~~vv~--p~~~~~~~~~~~~~~Ga~v~~~~ 76 (278)
+..+-++....++.. . ..++-.|-=|. |. .+...|+..|++.+++. |-..+..-...++.+|-..+..=
T Consensus 72 ~~~~~~~~~ir~~~~---~-~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv 147 (259)
T PF00290_consen 72 EKIFELVKEIRKKEP---D-IPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLV 147 (259)
T ss_dssp HHHHHHHHHHHHHCT---S-SEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHhccCC---C-CCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEE
Confidence 344455555552322 1 23555555563 22 25555777787777763 33334445556677777766543
Q ss_pred CCCChHHHHHHHHHHHHhCCCcccc
Q 023695 77 PAKGMKGAVQKAEEILAKTPNAYML 101 (278)
Q Consensus 77 ~~~~~~~~~~~a~~~~~~~~~~~~~ 101 (278)
.+..-++++ +++++..+++.|.
T Consensus 148 ~p~t~~~Ri---~~i~~~a~gFiY~ 169 (259)
T PF00290_consen 148 APTTPEERI---KKIAKQASGFIYL 169 (259)
T ss_dssp ETTS-HHHH---HHHHHH-SSEEEE
T ss_pred CCCCCHHHH---HHHHHhCCcEEEe
Confidence 222223333 3333443466554
No 480
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=40.45 E-value=40 Score=31.19 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=24.0
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCC
Q 023695 26 LIEPTSGNTGIGLAFMAAAKQYRLIITMPAS 56 (278)
Q Consensus 26 vv~assGN~g~a~A~~a~~~G~~~~vv~p~~ 56 (278)
||...+|-.|.+.|.+|++.|.++.++=+..
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~ 32 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAGAKVLLIEKGG 32 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTTS-EEEE-SSS
T ss_pred EEEECccHHHHHHHHHHHHCCCEEEEEECCc
Confidence 6778999999999999999999999986654
No 481
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=40.29 E-value=1.2e+02 Score=27.08 Aligned_cols=51 Identities=20% Similarity=0.106 Sum_probs=36.0
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 25 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
.|+..+++..++.++..+-.-| + .|++|.-.-..-...++.+|++++.++-
T Consensus 76 ~I~it~G~~~~i~~~~~~l~~g-~-~vlv~~P~y~~~~~~~~~~g~~~~~v~~ 126 (360)
T PRK07392 76 WILPGNGAAELLTWAGRELAQL-R-AVYLITPAFGDYRRALRAFGATVKELPL 126 (360)
T ss_pred hEEECCCHHHHHHHHHHHhCCC-C-eEEEECCCcHHHHHHHHHcCCeEEEEec
Confidence 4777777788887766542223 3 5666766666777888899999998874
No 482
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=40.27 E-value=1.8e+02 Score=24.34 Aligned_cols=51 Identities=14% Similarity=-0.051 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 023695 4 KIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 54 (278)
Q Consensus 4 R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p 54 (278)
++....+..+.+.-.....+.+++.-+.||-|+.+|..-..+|.+++-+..
T Consensus 12 ~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D 62 (227)
T cd01076 12 RGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSD 62 (227)
T ss_pred HHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 456666666655432223335687888999999999988888888776654
No 483
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=40.16 E-value=79 Score=26.27 Aligned_cols=32 Identities=19% Similarity=0.384 Sum_probs=21.9
Q ss_pred EEEEeC--CChHHHHHHHHHHHcCCeEEEEeCCC
Q 023695 25 VLIEPT--SGNTGIGLAFMAAAKQYRLIITMPAS 56 (278)
Q Consensus 25 ~vv~as--sGN~g~a~A~~a~~~G~~~~vv~p~~ 56 (278)
+|.-.| +|-+-..||.+|++.|+++.|++...
T Consensus 44 TifmtsGhGGC~P~GLAlAA~rrG~~vev~~~~~ 77 (207)
T PF11814_consen 44 TIFMTSGHGGCGPFGLALAAARRGFKVEVWVSTD 77 (207)
T ss_pred eecccCCCCCcChHHHHHHHHHcCCceEEEECCC
Confidence 454333 24455666777778899999999764
No 484
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=40.05 E-value=1.2e+02 Score=26.87 Aligned_cols=52 Identities=17% Similarity=0.177 Sum_probs=34.9
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHc-CCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023695 18 LITPGESVLIEPTSGNTGIGLAFMAAAK-QYRLIITMPASMSLERRIILRAFGAEL 72 (278)
Q Consensus 18 ~l~~g~~~vv~assGN~g~a~A~~a~~~-G~~~~vv~p~~~~~~~~~~~~~~Ga~v 72 (278)
.+++|++.+|...+|..|.++...|+.+ |.+.++.+... .+.+.++.+|++-
T Consensus 148 ~~~~g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~~~---~~~~~~~~~g~~~ 200 (352)
T cd08247 148 KLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTCSS---RSAELNKKLGADH 200 (352)
T ss_pred ccCCCCeEEEECCCchHHHHHHHHHHhcCCcceEEEEeCh---hHHHHHHHhCCCE
Confidence 5677777777777788999999999986 55444444322 2234557788754
No 485
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=39.95 E-value=1.6e+02 Score=26.62 Aligned_cols=83 Identities=14% Similarity=0.051 Sum_probs=42.1
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHH-HhCCCccccCC
Q 023695 25 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEIL-AKTPNAYMLQQ 103 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~ 103 (278)
.|+..+++..++.++..+- ..-.-.|++|...-..-....+.+|++++.++...++.-..+...+.. ......+++..
T Consensus 105 ~I~~t~Ga~~~i~~~~~~~-~~~gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~~v~l~~ 183 (380)
T PLN03026 105 NILVGCGADELIDLLMRCV-LDPGDKIIDCPPTFGMYVFDAAVNGAEVIKVPRTPDFSLDVPRIVEAVETHKPKLLFLTS 183 (380)
T ss_pred hEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCChHHHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHHhccCCcEEEEeC
Confidence 3666666677776665442 221124555554444444556789999998875322221112222222 22335666654
Q ss_pred CCCCC
Q 023695 104 FENPA 108 (278)
Q Consensus 104 ~~~~~ 108 (278)
-+||.
T Consensus 184 P~NPT 188 (380)
T PLN03026 184 PNNPD 188 (380)
T ss_pred CCCCC
Confidence 44443
No 486
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=39.87 E-value=1.9e+02 Score=23.38 Aligned_cols=50 Identities=14% Similarity=0.065 Sum_probs=31.7
Q ss_pred eEEEEeCCChHHH-HHHHHHHHcCCeEEEEeCCCCC------HHHHHHHHHcCCEEE
Q 023695 24 SVLIEPTSGNTGI-GLAFMAAAKQYRLIITMPASMS------LERRIILRAFGAELV 73 (278)
Q Consensus 24 ~~vv~assGN~g~-a~A~~a~~~G~~~~vv~p~~~~------~~~~~~~~~~Ga~v~ 73 (278)
+.+++.-..|++. ++|..+...|++++++..-..+ ..-++.|+..|++|+
T Consensus 140 ~lii~G~~t~~CV~~T~~~a~~~g~~v~v~~Da~~~~~~~~~~~al~~~~~~G~~i~ 196 (196)
T cd01011 140 RVDVVGLATDYCVKATALDALKAGFEVRVLEDACRAVDPETIERAIEEMKEAGVVLV 196 (196)
T ss_pred EEEEEEecccHHHHHHHHHHHHCCCEEEEeccccCCCCHHHHHHHHHHHHHccCEEC
Confidence 4455555566665 5566688889998888654221 233666777788763
No 487
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=39.85 E-value=1.4e+02 Score=26.59 Aligned_cols=52 Identities=15% Similarity=0.066 Sum_probs=38.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCe-EEEEeCCC-----CCHHHHHHHHHcCCEEEEe
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYR-LIITMPAS-----MSLERRIILRAFGAELVLT 75 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~-~~vv~p~~-----~~~~~~~~~~~~Ga~v~~~ 75 (278)
+.++...+|+.|.-+|..-...|.+ ++++.+.. .....+..++..|.+++.-
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~~~~~~~~l~~~gi~i~~~ 230 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEIERLIARGVEFLEL 230 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCCCHHHHHHHHHcCCEEeec
Confidence 3577888999999999887888997 88886532 1234456678888877654
No 488
>PRK12747 short chain dehydrogenase; Provisional
Probab=39.73 E-value=2e+02 Score=23.83 Aligned_cols=52 Identities=15% Similarity=0.067 Sum_probs=34.6
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC--CHHHHHHHHHcCCEEEEe
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM--SLERRIILRAFGAELVLT 75 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~--~~~~~~~~~~~Ga~v~~~ 75 (278)
..||+.++|--|.++|..-...|.++++...... .......++..|.++..+
T Consensus 6 ~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (252)
T PRK12747 6 VALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSI 59 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEE
Confidence 6799999999999999999999998776532221 112233445556555443
No 489
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=39.70 E-value=1.6e+02 Score=26.71 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=27.4
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC
Q 023695 25 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS 56 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~ 56 (278)
.++.-.+|..|.-+|...+.+|.+++++.+..
T Consensus 146 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~ 177 (396)
T PRK09754 146 SVVIVGAGTIGLELAASATQRRCKVTVIELAA 177 (396)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 46777889999999999999999999987643
No 490
>PLN02253 xanthoxin dehydrogenase
Probab=39.65 E-value=2e+02 Score=24.34 Aligned_cols=31 Identities=10% Similarity=0.067 Sum_probs=26.6
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 54 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p 54 (278)
..+|+..+|.-|.++|..-...|.+++++-.
T Consensus 20 ~~lItGas~gIG~~la~~l~~~G~~v~~~~~ 50 (280)
T PLN02253 20 VALVTGGATGIGESIVRLFHKHGAKVCIVDL 50 (280)
T ss_pred EEEEECCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 6799999999999999998889998777643
No 491
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=39.48 E-value=43 Score=21.56 Aligned_cols=26 Identities=8% Similarity=-0.058 Sum_probs=22.0
Q ss_pred eCCChHHHHHHHHHHHcCCeEEEEeC
Q 023695 29 PTSGNTGIGLAFMAAAKQYRLIITMP 54 (278)
Q Consensus 29 assGN~g~a~A~~a~~~G~~~~vv~p 54 (278)
....+++..++.+++..|+++.++.-
T Consensus 7 G~C~~~a~l~~~llr~~GIpar~v~g 32 (68)
T smart00460 7 GTCGEFAALFVALLRSLGIPARVVSG 32 (68)
T ss_pred eeeHHHHHHHHHHHHHCCCCeEEEee
Confidence 35568999999999999999999863
No 492
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=39.43 E-value=1.6e+02 Score=26.77 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=17.6
Q ss_pred CeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 47 YRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 47 ~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
.+..++.-++.-..--+.++.+|-++.++.+
T Consensus 6 ~p~~i~~G~g~~~~l~~~~~~~~~r~livt~ 36 (382)
T cd08187 6 NPTKIIFGKGTESELGKELKKYGKKVLLVYG 36 (382)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCEEEEEeC
Confidence 3445555555444444566666777766644
No 493
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=39.41 E-value=1.4e+02 Score=27.09 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=11.5
Q ss_pred CCCEEEEecCCCccHHHHHH
Q 023695 128 RIDALVSGIGTGGTITGAGK 147 (278)
Q Consensus 128 ~~d~iv~~vG~Gg~~aGi~~ 147 (278)
++| +|+++|+|+.+ =+++
T Consensus 87 ~~D-~IIaiGGGS~i-D~aK 104 (382)
T PRK10624 87 GAD-YLIAIGGGSPQ-DTCK 104 (382)
T ss_pred CCC-EEEEeCChHHH-HHHH
Confidence 577 67788877654 3444
No 494
>PRK07775 short chain dehydrogenase; Provisional
Probab=39.38 E-value=2.4e+02 Score=23.90 Aligned_cols=53 Identities=23% Similarity=0.155 Sum_probs=35.5
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 76 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~ 76 (278)
..+|+..+|--|.+++......|.+++++...... ..-...++..|.++..+.
T Consensus 12 ~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 65 (274)
T PRK07775 12 PALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFP 65 (274)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 56888888999999999988899987666543211 111233555677776544
No 495
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=39.24 E-value=1.4e+02 Score=28.00 Aligned_cols=50 Identities=20% Similarity=0.157 Sum_probs=36.4
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC--CHHHHHHHHHcCCEEEE
Q 023695 25 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM--SLERRIILRAFGAELVL 74 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~--~~~~~~~~~~~Ga~v~~ 74 (278)
.++....|..|+++|.+.+..|.+++++-..+. .....+.++..|.+++.
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~ 69 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRL 69 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEE
Confidence 466678899999999999999999887743332 22334567778887754
No 496
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=39.21 E-value=2.2e+02 Score=23.45 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=27.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 55 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~ 55 (278)
+.||+.++|.-|.++|..-...|.++++....
T Consensus 7 ~ilItGas~gIG~~la~~l~~~G~~vv~~~~~ 38 (253)
T PRK08642 7 TVLVTGGSRGLGAAIARAFAREGARVVVNYHQ 38 (253)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCC
Confidence 67999999999999999988899987775543
No 497
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=39.19 E-value=1.9e+02 Score=25.71 Aligned_cols=104 Identities=15% Similarity=0.145 Sum_probs=64.0
Q ss_pred eEEEEeCCChHHHHHHHHHH-HcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccC
Q 023695 24 SVLIEPTSGNTGIGLAFMAA-AKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQ 102 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~-~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 102 (278)
+++-.-.-||-|+++|-.++ -+|+++..+-|.. +.. ....+|.+. + +.+ ++.++. +...++
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~-~~~---~~~~~~~~~--~----~l~-------ell~~s-Dvv~lh 207 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRH-HKE---AEERFNARY--C----DLD-------TLLQES-DFVCII 207 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCC-chh---hHHhcCcEe--c----CHH-------HHHHhC-CEEEEe
Confidence 45666688999999999997 8999887665432 211 123345432 1 222 333443 455443
Q ss_pred CCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccH--HHHHHHHHh
Q 023695 103 QFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTI--TGAGKFLKE 151 (278)
Q Consensus 103 ~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~--aGi~~~~k~ 151 (278)
--.++. =..-+..|.++++ +++.+++-++-|+.+ ..+..++++
T Consensus 208 ~plt~~----T~~li~~~~l~~m--k~ga~lIN~aRG~vVde~AL~~AL~~ 252 (323)
T PRK15409 208 LPLTDE----THHLFGAEQFAKM--KSSAIFINAGRGPVVDENALIAALQK 252 (323)
T ss_pred CCCChH----HhhccCHHHHhcC--CCCeEEEECCCccccCHHHHHHHHHc
Confidence 322332 2345677888888 579999999999886 455555553
No 498
>PRK05650 short chain dehydrogenase; Provisional
Probab=39.18 E-value=2.3e+02 Score=23.77 Aligned_cols=53 Identities=21% Similarity=0.239 Sum_probs=36.3
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 76 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~ 76 (278)
+.+|+..+|.-|.++|..-...|.+++++...... +.....++..|.++..+.
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~ 55 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQR 55 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 46888899999999999988899987776543211 222334556676665543
No 499
>PLN02231 alanine transaminase
Probab=39.11 E-value=3.6e+02 Score=25.90 Aligned_cols=52 Identities=10% Similarity=0.008 Sum_probs=34.7
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023695 25 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 76 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~ 76 (278)
.|+..++++.++.++..+-...-.-.|++|.-.-..-...++.+|++++.++
T Consensus 193 ~I~iT~Ga~~ai~~~~~~l~~~~gd~Vli~~P~Y~~y~~~~~~~g~~~v~~~ 244 (534)
T PLN02231 193 DIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASIALHGGTLVPYY 244 (534)
T ss_pred cEEEeCCHHHHHHHHHHHhccCCCCEEEEeCCCChhHHHHHHHcCCEEEEEe
Confidence 4676777777777766553322123456666555666777889999998885
No 500
>PRK08361 aspartate aminotransferase; Provisional
Probab=38.94 E-value=1.7e+02 Score=26.43 Aligned_cols=52 Identities=12% Similarity=-0.048 Sum_probs=33.0
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 25 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
.|+..+++..+..++..+- ++-.-.|++|...-..-...++..|++++.++-
T Consensus 95 ~i~~t~G~~~al~~~~~~l-~~~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~ 146 (391)
T PRK08361 95 NVIVTAGAYEATYLAFESL-LEEGDEVIIPDPAFVCYVEDAKIAEAKPIRIPL 146 (391)
T ss_pred cEEEeCChHHHHHHHHHHh-cCCCCEEEEcCCCCcccHHHHHHcCCEEEEEec
Confidence 4666677777777665543 232345666654444445667789999988863
Done!