RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 023695
(278 letters)
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Length = 322
Score = 538 bits (1388), Expect = 0.0
Identities = 226/274 (82%), Positives = 251/274 (91%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
IG+SMISDAE KGLI PGESVLIEPTSGNTG+GLAF AAAK Y+LIITMPASMS ERRII
Sbjct: 49 IGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRII 108
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG 124
L AFG ELVLTDPAKGMKGA+ KAEEILAKTPN YMLQQFENPANPKIHYETTGPE+WKG
Sbjct: 109 LLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKG 168
Query: 125 SGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGA 184
+GG+ID VSGIGTGGTITGAGK+LKE+N N+KLYG+EP ES +LSGGKPGPHKIQGIGA
Sbjct: 169 TGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGA 228
Query: 185 GFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAG 244
GF+P VL V++IDEVVQVSSDE+I+ A+ LALKEGL VGISSG AAAAAI++A+RPENAG
Sbjct: 229 GFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAG 288
Query: 245 KLIVVIFPSFGERYLSSVLFESVRKEAESMTFEA 278
KL V IFPSFGERYLS+VLF++ RKEAE+MTFEA
Sbjct: 289 KLFVAIFPSFGERYLSTVLFDATRKEAEAMTFEA 322
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP
dependent enzyme, serine ACET transferase; HET: LLP;
1.68A {Leishmania donovani} PDB: 3t4p_A* 3spx_A* 4air_A*
Length = 334
Score = 534 bits (1377), Expect = 0.0
Identities = 144/271 (53%), Positives = 196/271 (72%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
+G+++ AE +G + PG+S+++E +SGNTG+ LA + A + Y++IITMP SMSLERR +
Sbjct: 54 LGFAIYDKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCL 113
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG 124
LR FGAE++LT A GMKGAV A++I+A PNA + QF N IH ETTGPE+W+
Sbjct: 114 LRIFGAEVILTPAALGMKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQ 173
Query: 125 SGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGA 184
+ +D ++G+GTGGT+TG + LK+ + ++ +EPTESPVLSGGKPGPHKIQGIG
Sbjct: 174 TNHNVDCFIAGVGTGGTLTGVARALKKMGSHARIVAVEPTESPVLSGGKPGPHKIQGIGP 233
Query: 185 GFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAG 244
GFVP VL+ ++IDEV+ V+ D+AIETA L +G+F G S G AA++IA+RPE G
Sbjct: 234 GFVPDVLDRSLIDEVLCVAGDDAIETALKLTRSDGVFCGFSGGANVYAALKIAERPEMEG 293
Query: 245 KLIVVIFPSFGERYLSSVLFESVRKEAESMT 275
K IV + PSFGERYLS+ L+ SVR E S+
Sbjct: 294 KTIVTVIPSFGERYLSTTLYRSVRDEVSSLP 324
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis,
assimilatory sulfate reduction, S plant inorganic sulfur
uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Length = 430
Score = 537 bits (1385), Expect = 0.0
Identities = 204/273 (74%), Positives = 243/273 (89%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
IGYSM++DAE KG I+PG+SVL+EPTSGNTGIGLAF+AA++ YRLI+TMPASMS+ERR++
Sbjct: 157 IGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVL 216
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG 124
L+AFGAELVLTDPAKGM GAVQKAEEIL TP+AYMLQQF+NPANPKIHYETTGPE+W
Sbjct: 217 LKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDD 276
Query: 125 SGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGA 184
+ G++D V+GIGTGGTITG G+F+KEKNP ++ G+EPTES +LSGGKPGPHKIQGIGA
Sbjct: 277 TKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGA 336
Query: 185 GFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAG 244
GF+P L+ I+DEV+ +SS+EAIETAK LALKEGL VGISSG AAAAAI++AKRPENAG
Sbjct: 337 GFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENAG 396
Query: 245 KLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 277
KLI V+FPSFGERYLS+ LF+S+R+E E M E
Sbjct: 397 KLIAVVFPSFGERYLSTPLFQSIREEVEKMQPE 429
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism,
cysteine biosynthesis, transferase; HET: LLP; 1.80A
{Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Length = 313
Score = 517 bits (1333), Expect = 0.0
Identities = 147/264 (55%), Positives = 199/264 (75%), Gaps = 1/264 (0%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
IG +M+ AE GLI P ++++EPTSGNTGI LA + AA+ YR ++TMP +MSLERR++
Sbjct: 50 IGVAMLQAAEQAGLIKPD-TIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRML 108
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG 124
LRA+GAEL+LT A GM GA+ KAEE+ ++ QQFENPANP IH TT E+W+
Sbjct: 109 LRAYGAELILTPGADGMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRD 168
Query: 125 SGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGA 184
+ G++D +V+G+GTGGTITG + +KE+ P+ + +EP SPVLSGG+ GPH IQGIGA
Sbjct: 169 TDGKVDIVVAGVGTGGTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGA 228
Query: 185 GFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAG 244
GFVP VL+ +++DE++ V +++A+ A+ LA +EGL VGISSG A AA+++A+RPENAG
Sbjct: 229 GFVPPVLDQDLVDEIITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAG 288
Query: 245 KLIVVIFPSFGERYLSSVLFESVR 268
KLIVV+ P FGERYLS+ LF V
Sbjct: 289 KLIVVVLPDFGERYLSTPLFADVA 312
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba
histolytica} PDB: 3bm5_A*
Length = 343
Score = 500 bits (1290), Expect = 0.0
Identities = 114/271 (42%), Positives = 176/271 (64%), Gaps = 4/271 (1%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
+G++++ A G + PG +IE TSGNTGI L A YR+ I MP++MS+ER++I
Sbjct: 61 VGFNIVYQAIKDGRLKPG-MEIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMI 119
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAY-MLQQFENPANPKIHYETTGPELWK 123
++AFGAEL+LT+ KGM GA+++ +++ + P Y + QF NP N H+ T E+W+
Sbjct: 120 MKAFGAELILTEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHH-YTANEIWE 178
Query: 124 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 183
+ G +D +VS +GT GT+ G + LKEK IK+ +EP ES VL G GPH IQGIG
Sbjct: 179 DTDGEVDIVVSAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQGIG 238
Query: 184 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 243
AGF+P + + +DE++ + + +A + A+ + +G+ G+SSG A A ++ A++PEN
Sbjct: 239 AGFIPDIYKKEFVDEIIPIKTQDAWKMARAVVKYDGIMCGMSSGAAILAGLKEAEKPENE 298
Query: 244 GKLIVVIFPSFGERYLSSVLFESVRKEAESM 274
GK IV+I PS GERYLS+ L++ ++ E +
Sbjct: 299 GKTIVIIVPSCGERYLSTDLYK-IKDEGTKI 328
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY
crystallography, sulfhydrylase; HET: LLP; 1.55A
{Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X*
3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Length = 316
Score = 499 bits (1287), Expect = 0.0
Identities = 149/272 (54%), Positives = 194/272 (71%), Gaps = 9/272 (3%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
IG +M+ AE G +T G +++ TSGNTGI LA++AAA+ Y++ +TMP +MSLER+ +
Sbjct: 45 IGANMVWQAEKDGTLTKG-KEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRL 103
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAY-MLQQFENPANPKIHYETTGPELWK 123
L G LVLT+ AKGMKGA+ KAEEI+A P+ Y ML+QFENPANP+IH ETTGPE+WK
Sbjct: 104 LCGLGVNLVLTEGAKGMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWK 163
Query: 124 GSGGRIDALVSGIGTGGTITGAGKFLK-EKNPNIKLYGIEPTESPVLSGG------KPGP 176
+ G++D +V+G+GTGG+ITG + +K + I +EP ESPV+S KPGP
Sbjct: 164 DTDGKVDVVVAGVGTGGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGP 223
Query: 177 HKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEI 236
HKIQGIGAGF+P L+++IID V V SD A+ TA+ L +EG+ GISSG A AAA +
Sbjct: 224 HKIQGIGAGFIPKNLDLSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAADRL 283
Query: 237 AKRPENAGKLIVVIFPSFGERYLSSVLFESVR 268
AK PE A KLIVVI PS ERYLS+ LFE +
Sbjct: 284 AKLPEFADKLIVVILPSASERYLSTALFEGIE 315
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1
PDB: 2eco_A* 2ecq_A* 2efy_A*
Length = 304
Score = 497 bits (1282), Expect = e-180
Identities = 137/262 (52%), Positives = 187/262 (71%), Gaps = 3/262 (1%)
Query: 5 IGYSMISDAEAKGLITPG-ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 63
+ MI DAE +G++ PG V++EPTSGNTGIGLA +AA++ YRLI+TMPA MS ER+
Sbjct: 43 PAWYMIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKR 102
Query: 64 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 123
+L+AFGAELVLTDP + M A ++A L + A+M QF+NPAN + HYETTGPEL++
Sbjct: 103 VLKAFGAELVLTDPERRMLAAREEALR-LKEELGAFMPDQFKNPANVRAHYETTGPELYE 161
Query: 124 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 183
GRIDA V G GTGGTITG G++LKE+ P++K+ +EP S VLSGGK G H QG+G
Sbjct: 162 ALEGRIDAFVYGSGTGGTITGVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGMG 221
Query: 184 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 243
GF+P L+++++D V+QV ++A A+ LA +EGLF+G+SSGG AA+++A R
Sbjct: 222 PGFIPENLDLSLLDGVIQVWEEDAFPLARRLAREEGLFLGMSSGGIVWAALQVA-RELGP 280
Query: 244 GKLIVVIFPSFGERYLSSVLFE 265
GK + I P G +YLS+ L+
Sbjct: 281 GKRVACISPDGGWKYLSTPLYA 302
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics,
NPPSFA, NAT project on protein structural and functional
analyses; 1.90A {Geobacillus kaustophilus}
Length = 308
Score = 483 bits (1247), Expect = e-175
Identities = 148/261 (56%), Positives = 194/261 (74%), Gaps = 3/261 (1%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
I +MI AE G + PG ++EPTSGNTGIGLA +AAAK Y+ ++ MP +MSLERR +
Sbjct: 48 IALAMIEAAEKAGKLKPG-DTIVEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNL 106
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG 124
LRA+GAELVLT A+GM+GA+ KAEE L + +M QQF+N ANP+IH TTG E+ +
Sbjct: 107 LRAYGAELVLTPGAQGMRGAIAKAEE-LVREHGYFMPQQFKNEANPEIHRLTTGKEIVEQ 165
Query: 125 SGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGA 184
G ++DA V+G+GTGGTITGAGK L+E PNIK+Y +EP +SPVLSGGKPGPHKIQGIGA
Sbjct: 166 MGDQLDAFVAGVGTGGTITGAGKVLREAYPNIKIYAVEPADSPVLSGGKPGPHKIQGIGA 225
Query: 185 GFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAG 244
GFVP +L+ +I D V+ V+++EA A+ A +EG+ GISSG A AA+++AK G
Sbjct: 226 GFVPDILDTSIYDGVITVTTEEAFAAARRAAREEGILGGISSGAAIHAALKVAKE-LGKG 284
Query: 245 KLIVVIFPSFGERYLSSVLFE 265
K ++ I PS GERYLS+ L++
Sbjct: 285 KKVLAIIPSNGERYLSTPLYQ 305
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J
protein structure initiative, joint center for
structural G transferase; 1.80A {Thermotoga maritima}
SCOP: c.79.1.1 PDB: 3fca_A*
Length = 303
Score = 470 bits (1213), Expect = e-170
Identities = 132/259 (50%), Positives = 178/259 (68%), Gaps = 6/259 (2%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
MI DAE +GL+ G ++EPTSGN GI +A + A + +R+I+TMP +MS+ERR +
Sbjct: 50 PALFMILDAEKRGLLKNG---IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKV 106
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG 124
L+ GAELVLT GMKGAV+KA E +++ A+ML QFENP N H TTGPE+ K
Sbjct: 107 LKMLGAELVLTPGELGMKGAVEKALE-ISRETGAHMLNQFENPYNVYSHQFTTGPEILKQ 165
Query: 125 SGGRIDALVSGIGTGGTITGAGKFLKEK-NPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 183
+IDA V+G+GTGGTI+G G+ LK +K+ +EP +SPVLSGG+PG H IQGIG
Sbjct: 166 MDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIG 225
Query: 184 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 243
AGFVP +L+ ++IDEV+ V +EA E A+ LA KEGL VGISSG AAA+++A++
Sbjct: 226 AGFVPKILDRSVIDEVITVEDEEAYEMARYLAKKEGLLVGISSGANVAAALKVAQKLGPD 285
Query: 244 GKLIVVIFPSFGERYLSSV 262
+ +V + P ERYLS +
Sbjct: 286 AR-VVTVAPDHAERYLSIL 303
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp
fold, amino-acid biosynthesis; HET: PLP; 1.53A
{Mycobacterium tuberculosis} PDB: 3fgp_A* 3dki_A*
3dwi_A*
Length = 325
Score = 449 bits (1158), Expect = e-161
Identities = 99/272 (36%), Positives = 145/272 (53%), Gaps = 11/272 (4%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
MI AEA GL+ PG + ++EPTSGNTGI LA A K YRLI MP + S+ERR +
Sbjct: 56 PAVRMIEQAEADGLLRPG-ATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQL 114
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG 124
L +GA+++ + G AV A+E+ A P+ ML Q+ NPAN HY TGPEL
Sbjct: 115 LELYGAQIIFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLAD 174
Query: 125 SGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGA 184
I V+G+GT GT+ G G+FL+E N+K+ EP G + ++ +
Sbjct: 175 L-PEITHFVAGLGTTGTLMGTGRFLREHVANVKIVAAEPRYG-------EGVYALRNMDE 226
Query: 185 GFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAG 244
GFVP + + I+ V + +A+ + L EG+F GIS+G AA+ + AG
Sbjct: 227 GFVPELYDPEILTARYSVGAVDAVRRTRELVHTEGIFAGISTGAVLHAALGVGAGALAAG 286
Query: 245 K--LIVVIFPSFGERYLSSVLFESVRKEAESM 274
+ I ++ G +YLS+ + +AE+
Sbjct: 287 ERADIALVVADAGWKYLSTGAYAGSLDDAETA 318
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis,
transferase, ENZ kinetics, enzymatic sythesis of novel
compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB:
2bhs_A* 2bht_A* 2jc3_A*
Length = 303
Score = 437 bits (1127), Expect = e-157
Identities = 112/261 (42%), Positives = 162/261 (62%), Gaps = 11/261 (4%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
SMI +AE +G I PG VLIE TSGNTGI LA +AA K YR+ + MP +MS ERR
Sbjct: 44 AALSMIVEAEKRGEIKPG-DVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAA 102
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG 124
+RA+GAEL+L +GM+GA A E+ + +L QF NP NP HY TTGPE+W+
Sbjct: 103 MRAYGAELILVTKEQGMEGARDLALEMANRGEG-KLLDQFNNPDNPYAHYTTTGPEIWQQ 161
Query: 125 SGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGA 184
+GGRI VS +GT GTITG +F++E++ + + G++P E + G + P
Sbjct: 162 TGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPT------- 214
Query: 185 GFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAG 244
++PG+ +++DEV+ + +A T + LA++EG+F G+SSGGA A A+ +A N
Sbjct: 215 EYLPGIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAA--ANPD 272
Query: 245 KLIVVIFPSFGERYLSSVLFE 265
++V I G+RYLS+ +F
Sbjct: 273 AVVVAIICDRGDRYLSTGVFG 293
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase;
HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1
Length = 389
Score = 424 bits (1093), Expect = e-150
Identities = 60/263 (22%), Positives = 119/263 (45%), Gaps = 15/263 (5%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
+IS + + G S++ + TS N G+ L+ +A YR + +P + +++
Sbjct: 130 PAVEIISRLSRR--VEKG-SLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLL 186
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK- 123
R GA++++ A + + + +K + QF N AN + H T E++
Sbjct: 187 PRLLGAQVIVDPEAPSTVHLLPRVMK-DSKNEGFVHVNQFYNDANFEAHMRGTAREIFVQ 245
Query: 124 --GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQG 181
G + + +GT G ++ A +L+ +P+I+ ++P + + G I+
Sbjct: 246 SRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPG-------IRR 298
Query: 182 IGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 241
+ G + + ++I + +V+ +EA+E +A +GL +G S G A A + A +
Sbjct: 299 VETGMLW-INMLDISYTLAEVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEGD 357
Query: 242 NAGKLIVVIFPSFGERYLSSVLF 264
VV+ P G +YLS V
Sbjct: 358 LEPGDYVVVVPDTGFKYLSLVQN 380
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase;
HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB:
3pc2_A* 3pc4_A*
Length = 527
Score = 411 bits (1059), Expect = e-143
Identities = 96/269 (35%), Positives = 151/269 (56%), Gaps = 10/269 (3%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
IGY M+ DAE +GL+ PG +IEPTSGNTGIGLA A K Y+ II MP MS E+
Sbjct: 96 IGYRMVQDAEEQGLLKPG-YTIIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSA 154
Query: 65 LRAFGAELVLTD---PAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPEL 121
LR GA+++ T +G + A+++ +TPN+ +L Q+ N NP HY+ T E+
Sbjct: 155 LRTLGAKIIRTPTEAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEI 214
Query: 122 WKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPV-----LSGGKPGP 176
++D +V GT GTI+G G+ +KE+ P+ ++ G++P S + L+
Sbjct: 215 LWQLDNKVDMIVVSAGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELNKTDVQF 274
Query: 177 HKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEI 236
++++GIG F P V + ++D ++ + ++ L +EGL G SSGGA AA+E
Sbjct: 275 YEVEGIGYDFPPTVFDDTVVDVWTKIGDSDCFPMSRRLNAEEGLLCGGSSGGAMHAALEH 334
Query: 237 AKRPENAGKLIVVIFPSFGERYLSSVLFE 265
A++ G+ VVI P Y++ + +
Sbjct: 335 ARK-LKKGQRCVVILPDGIRNYMTKFVSD 362
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of
PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens}
SCOP: c.79.1.1 PDB: 1m54_A*
Length = 435
Score = 405 bits (1043), Expect = e-142
Identities = 104/269 (38%), Positives = 157/269 (58%), Gaps = 10/269 (3%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
I MI DAE G + PG +IEPTSGNTGIGLA AA + YR II MP MS E+ +
Sbjct: 144 ISLRMIEDAERDGTLKPG-DTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDV 202
Query: 65 LRAFGAELVLTD---PAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPEL 121
LRA GAE+V T + V A + + PN+++L Q+ N +NP HY+TT E+
Sbjct: 203 LRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEI 262
Query: 122 WKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPV-----LSGGKPGP 176
+ G++D LV+ +GTGGTITG + LKEK P ++ G++P S + L+ +
Sbjct: 263 LQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTT 322
Query: 177 HKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEI 236
++++GIG F+P VL+ ++D+ + + +EA A++L +EGL G S+G A A++
Sbjct: 323 YEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKA 382
Query: 237 AKRPENAGKLIVVIFPSFGERYLSSVLFE 265
A+ + G+ VVI P Y++ L +
Sbjct: 383 AQELQ-EGQRCVVILPDSVRNYMTKFLSD 410
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme,
tryptophan synthase beta like PLP-dependent enzymes
superfamily; HET: IT1; 2.00A {Escherichia coli} PDB:
4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Length = 398
Score = 79.1 bits (195), Expect = 6e-17
Identities = 46/235 (19%), Positives = 75/235 (31%), Gaps = 29/235 (12%)
Query: 25 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGA 84
T GN G G+A+ A +I MP + ER + GAE ++TD
Sbjct: 114 TFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMNYDD--T 171
Query: 85 VQKAEEILAKTPNAYMLQQFENPANPKIH------YETTGPELW---KGSGGRIDALVSG 135
V+ + A+ ++Q KI Y T E + G ++
Sbjct: 172 VRLTMQ-HAQQHGWEVVQDTAWEGYTKIPTWIMQGYATLADEAVEQMREMGVTPTHVLLQ 230
Query: 136 IGTGGTITGAGKFLKE--KNPNIKLYGIEPTESPV----LSGGKPGPHKIQ------GIG 183
G G G +L + N+ +EP ++ G G+
Sbjct: 231 AGVGAMAGGVLGYLVDVYSPQNLHSIIVEPDKADCIYRSGVKGDIVNVGGDMATIMAGLA 290
Query: 184 AGFVPGVLEVNII----DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAI 234
G P L I+ + + A ++L G I SG + A +
Sbjct: 291 CG-EPNPLGWEILRNCATQFISCQDSVAALGMRVLGNPYGNDPRIISGESGAVGL 344
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P
5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli}
PDB: 3ss9_X* 3r0x_A* 3r0z_A
Length = 442
Score = 77.5 bits (191), Expect = 2e-16
Identities = 47/262 (17%), Positives = 85/262 (32%), Gaps = 32/262 (12%)
Query: 7 YSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR 66
YS + E K + + ++GN G+ + M+A +++ + M A ++ LR
Sbjct: 146 YSKLLSPEFKQFF--SQYSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLR 203
Query: 67 AFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPEL----- 121
+ G +V + + AV++ + PN + EN + Y G L
Sbjct: 204 SHGVTVVEYE--QDYGVAVEEGRKAAQSDPNCF-FIDDENSRTLFLGYSVAGQRLKAQFA 260
Query: 122 ---WKGSGGRIDALVSGIGTGGTITGAGKFLKEK-NPNIKLYGIEPTESPV----LSGGK 173
+ G GG G LK ++ + EPT SP + G
Sbjct: 261 QQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVHTGL 320
Query: 174 PGPHKIQGIGAGFV----------PGVLEVNII----DEVVQVSSDEAIETAKLLALKEG 219
+Q IG + + D +S + LA +EG
Sbjct: 321 HDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGFYTLSDQTMYDMLGWLAQEEG 380
Query: 220 LFVGISSGGAAAAAIEIAKRPE 241
+ + S+ A +
Sbjct: 381 IRLEPSALAGMAGPQRVCASVS 402
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate,
PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Length = 360
Score = 66.9 bits (164), Expect = 7e-13
Identities = 49/249 (19%), Positives = 88/249 (35%), Gaps = 28/249 (11%)
Query: 22 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKG 80
G+ ++ ++GNT A AA + +P +++ + GA+++ D
Sbjct: 84 GQRAVLCASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQID--GN 141
Query: 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIH--YETTGPELWKGSGGRIDALVSGIGT 138
++ A ++ A P ++ N NP +T E+ G D +G
Sbjct: 142 FDDCLELARKMAADFPTISLV----NSVNPVRIEGQKTAAFEIVDVLGTAPDVHALPVGN 197
Query: 139 GGTITGAGKFLKE--------KNPNIKLYGIEPTESPVLSGGKPGPHK---IQGIGAGFV 187
G IT K E K P ++ G + + L G+P H I G
Sbjct: 198 AGNITAYWKGYTEYHQLGLIDKLP--RMLGTQAAGAAPLVLGEPVSHPETIATAIRIGSP 255
Query: 188 P-GVLEVNIIDE----VVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE- 241
V + + S +E + L+A EG+FV +S + A ++
Sbjct: 256 ASWTSAVEAQQQSKGRFLAASDEEILAAYHLVARVEGVFVEPASAASIAGLLKAIDDGWV 315
Query: 242 NAGKLIVVI 250
G +V
Sbjct: 316 ARGSTVVCT 324
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus
thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Length = 351
Score = 66.5 bits (163), Expect = 9e-13
Identities = 48/249 (19%), Positives = 86/249 (34%), Gaps = 29/249 (11%)
Query: 22 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDPAKG 80
G + ++GNT A AA I+ +PA +L + GA +V + G
Sbjct: 76 GAQAVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVE---G 132
Query: 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIH--YETTGPELWKGSGGRIDALVSGIGT 138
+ + L + ++ N NP +T E+ G +G
Sbjct: 133 NFDDALRLTQKLTEAFPVALV----NSVNPHRLEGQKTLAFEVVDELGDAPHYHALPVGN 188
Query: 139 GGTITGAGKFLKE--------KNPNIKLYGIEPTESPVLSGGKP--GPHKI-QGIGAGFV 187
G IT K + P ++ G + + L G+P P + I G
Sbjct: 189 AGNITAHWMGYKAYHALGKAKRLP--RMLGFQAAGAAPLVLGRPVERPETLATAIRIGNP 246
Query: 188 P-GVLEVNIIDE----VVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE- 241
V +E + V+ +E + + LA +EG+F +S A A ++ +
Sbjct: 247 ASWQGAVRAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEPASAAAMAGVFKLLREGRL 306
Query: 242 NAGKLIVVI 250
+V+
Sbjct: 307 EPESTVVLT 315
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A
{Aquifex aeolicus}
Length = 352
Score = 65.0 bits (159), Expect = 3e-12
Identities = 47/249 (18%), Positives = 86/249 (34%), Gaps = 29/249 (11%)
Query: 22 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDPAKG 80
G+ +I ++GNT A AA R + +P ++ + +GA+++ G
Sbjct: 78 GKRAVICASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQ---G 134
Query: 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIH--YETTGPELWKGSGGRIDALVSGIGT 138
+ + ++ N NP +T E+ G D +G
Sbjct: 135 TFDDALNIVRKIGENFPVEIV----NSVNPYRIEGQKTAAFEICDTLGEAPDYHFIPVGN 190
Query: 139 GGTITGAGKFLKE--------KNPNIKLYGIEPTESPVLSGGKPGPHK---IQGIGAGFV 187
G IT K K K P ++ G + + + G P + I G
Sbjct: 191 AGNITAYWKGFKIYYEEGKITKLP--RMMGWQAEGAAPIVKGYPIKNPQTIATAIKIGNP 248
Query: 188 P-GVLEVNIIDE----VVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE- 241
+ E + VS E + KL+A EG+F +S + A I++ +
Sbjct: 249 YSWKSALKAAQESGGKIDAVSDSEILYAYKLIASTEGVFCEPASAASVAGLIKLVREGFF 308
Query: 242 NAGKLIVVI 250
G+++
Sbjct: 309 KGGEVVTCT 317
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP;
1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Length = 346
Score = 64.1 bits (157), Expect = 6e-12
Identities = 51/241 (21%), Positives = 98/241 (40%), Gaps = 34/241 (14%)
Query: 31 SGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEE 90
SGN G L + A + I +P + +++ ++A+GA +V +P+ + A+
Sbjct: 84 SGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPS--DESRENVAKR 141
Query: 91 ILAKTPNAYMLQQFENPANPKIHYE------TTGPELWKGSGGRIDALVSGIGTGGTITG 144
+ +T M+ + P T E+ +DALV +G GG + G
Sbjct: 142 VTEET-EGIMVHPNQEP-------AVIAGQGTIALEVLNQVPL-VDALVVPVGGGGMLAG 192
Query: 145 AGKFLKEKNPNIKLYGIEPTESPV----LSGGKPGPHKIQ------GIGAGFVPGVLEVN 194
+K P++K+Y EP+ + GK P+ G+ + G+
Sbjct: 193 IAITVKALKPSVKVYAAEPSNADDCYQSKLKGKLMPNLYPPETIADGVKSS--IGLNTWP 250
Query: 195 II----DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA-GKLIVV 249
II D++ V+ DE +L+ + L + ++G AA + + + K I +
Sbjct: 251 IIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAVLSQHFQTVSPEVKNICI 310
Query: 250 I 250
+
Sbjct: 311 V 311
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme,
S-adenosyl-methionine, allostery; 2.25A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
Length = 486
Score = 64.4 bits (157), Expect = 6e-12
Identities = 47/300 (15%), Positives = 99/300 (33%), Gaps = 46/300 (15%)
Query: 9 MISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA-SMSLERRIILRA 67
++S + + ++G+T L+ A+ I+ +PA +S+ + + A
Sbjct: 170 LVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIA 229
Query: 68 FGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIH--YETTGPELWKGS 125
GA ++ D K + Y+ N N +T E+ +
Sbjct: 230 NGAFVLSID---TDFDGCMKLIREITAELPIYLA----NSLNSLRLEGQKTAAIEILQQF 282
Query: 126 GGRI-DALVSGIGTGGTITGAGKFLK--------EKNPNIKLYGIEPTE-SPVLSGGKPG 175
++ D ++ G G I K K ++ P ++ + +P+ K G
Sbjct: 283 DWQVPDWVIVPGGNLGNIYAFYKGFKXCQELGLVDRIP--RMVCAQAANANPLYLHYKSG 340
Query: 176 PHKIQ----------GIGAGF-VPGVLEVNIIDE----VVQVSSDEAIETAKLLALKEGL 220
+ I G V V + + V + + +E + A A G+
Sbjct: 341 WKDFKPMTASTTFASAIQIGDPVSIDRAVYALKKCNGIVEEAT-EEELMDAMAQADSTGM 399
Query: 221 FVGISSGGAAAAAIEIAKRPE-NAGKLIVVI-------FPSFGERYLSSVLFESVRKEAE 272
F+ +G A A ++ + VV+ F Y S+ + + + +
Sbjct: 400 FICPHTGVALTALFKLRNQGVIAPTDRTVVVSTAHGLKFTQSKIDYHSNAIPDMACRFSN 459
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III;
dimer, PLP, isomerase; HET: PLP; 1.70A
{Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A*
2zpu_A* 2zr8_A*
Length = 323
Score = 62.9 bits (154), Expect = 1e-11
Identities = 58/284 (20%), Positives = 103/284 (36%), Gaps = 62/284 (21%)
Query: 2 LQKIG-------YSMI---SDAE-AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLI 50
QK+G + + ++A+ G++T +SGN +A A
Sbjct: 50 FQKMGAFKFRGALNALSQLNEAQRKAGVLTF--------SSGNHAQAIALSAKILGIPAK 101
Query: 51 ITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANP 110
I MP + + +G ++++ D + A+EI +
Sbjct: 102 IIMPLDAPEAKVAATKGYGGQVIMYDRY--KDDREKMAKEISEREGLTI----------- 148
Query: 111 KIH-YE---------TTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160
I Y+ T EL++ G +DAL +G GG ++G+ + PN ++YG
Sbjct: 149 -IPPYDHPHVLAGQGTAAKELFE-EVGPLDALFVCLGGGGLLSGSALAARHFAPNCEVYG 206
Query: 161 IEPTESPV----LSGGKPGPHKIQ-----GIGAGFVPGVLEVNII----DEVVQVSSDEA 207
+EP G G G +II D+++ VS +E
Sbjct: 207 VEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQTQ-HLGNYTFSIIKEKVDDILTVSDEEL 265
Query: 208 IETAKLLALKEGLFV-GISSGGAAAAAIEIAKRPENAGKLIVVI 250
I+ K A + + V +G + AA A + + K I +I
Sbjct: 266 IDCLKFYAARMKIVVEP--TGCLSFAAA-RAMKEKLKNKRIGII 306
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative,
RSGI, structural genomics, lyase; HET: PLP; 2.15A
{Thermus thermophilus} SCOP: c.79.1.1
Length = 311
Score = 62.5 bits (153), Expect = 2e-11
Identities = 61/284 (21%), Positives = 101/284 (35%), Gaps = 60/284 (21%)
Query: 2 LQKIG-------YSMISDAE-AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITM 53
LQK G S E KGL+ +SGN G+A+ A + ++ M
Sbjct: 44 LQKTGSFKARGALSKALALENPKGLLAV--------SSGNHAQGVAYAAQVLGVKALVVM 95
Query: 54 PASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIH 113
P S ++ RA+GAE+V K + A + +T A IH
Sbjct: 96 PEDASPYKKACARAYGAEVVDRGVT--AKNREEVARALQEETGYAL------------IH 141
Query: 114 -YE---------TTGPELW---KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160
++ T G EL G A+++ +G GG + G +K +P + G
Sbjct: 142 PFDDPLVIAGQGTAGLELLAQAGRMGVFPGAVLAPVGGGGLLAGLATAVKALSPTTLVLG 201
Query: 161 IEPTESPV----LSGGKPGPHKIQ------GIGAGFVPGVLEVNII----DEVVQVSSDE 206
+EP + L G+ + G+ G I+ D ++ VS +
Sbjct: 202 VEPEAADDAKRSLEAGRILRLEAPPRTRADGVRTL-SLGERTFPILRERVDGILTVSEEA 260
Query: 207 AIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVI 250
+E +LL + V GA A + L +++
Sbjct: 261 LLEAERLLFTRTKQVV--EPTGALPLAAVLEHGARLPQTLALLL 302
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP:
c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Length = 372
Score = 61.9 bits (151), Expect = 3e-11
Identities = 46/281 (16%), Positives = 91/281 (32%), Gaps = 59/281 (20%)
Query: 2 LQKIG-------YSMI---SDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLII 51
Q G + + ++GN G+ A+ A I
Sbjct: 70 AQPSGSFKIRGIGHFCKRWAKQGCAHFVCS--------SAGNAGMAAAYAARQLGVPATI 121
Query: 52 TMPASMSLERRIILRAFGAELVLT----DPAKGMKGAVQKAEEILAKTPNAYMLQQFENP 107
+P + L+ GA + D A + A+ + P + F++P
Sbjct: 122 VVPGTTPALTIERLKNEGATCKVVGELLDEAF------ELAKALAKNNPGWVYIPPFDDP 175
Query: 108 ------ANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKE-KNPNIKLYG 160
A + EL + + A+ +G GG + G + L+E ++ +
Sbjct: 176 LIWEGHA-------SIVKELKETLWEKPGAIALSVGGGGLLCGVVQGLQECGWGDVPVIA 228
Query: 161 IEPTESPV----LSGGK----PGPHKI-QGIGAGFVPGVLEVNII----DEVVQVSSDEA 207
+E + + GK P + + +G G + + +S EA
Sbjct: 229 METFGAHSFHAATTAGKLVSLPKITSVAKALGVK-TVGSQALKLFQEHPIFSEVISDQEA 287
Query: 208 IETAKLLALKEGLFVGISSGGAAAAAIE--IAKRPENAGKL 246
+ + E + V + GAA AA+ + ++ + G L
Sbjct: 288 VAAIEKFVDDEKILVE-PACGAALAAVYSHVIQKLQLEGNL 327
>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine
deaminase, PLP, threonine DEH L-threonine metabolism;
HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A*
2gn2_A*
Length = 342
Score = 56.4 bits (137), Expect = 2e-09
Identities = 53/279 (18%), Positives = 97/279 (34%), Gaps = 50/279 (17%)
Query: 2 LQKIG-------YSMI---SDAE-AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLI 50
+Q+ G ++ + ++AE KG++ ++GN G++ A
Sbjct: 64 MQRTGSFKIRGAFNKLSSLTEAEKRKGVVAC--------SAGNHAQGVSLSCAMLGIDGK 115
Query: 51 ITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANP 110
+ MP + + AE+VL + K E + +T + ++
Sbjct: 116 VVMPKGAPKSKVAATCDYSAEVVLHG--DNFNDTIAKVSE-IVETEGRIFIPPYD----- 167
Query: 111 KIHYE------TTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPT 164
+ T G E+ + +D ++ IG GG I G +K NP IK+ G++
Sbjct: 168 --DPKVIAGQGTIGLEIME-DLYDVDNVIVPIGGGGLIAGIAIAIKSINPTIKVIGVQAE 224
Query: 165 ESPV----LSGGKP----GPHKI-QGIGAGFVPGVLEVNII----DEVVQVSSDEAIETA 211
G+ + G PG L I+ D++V VS DE +
Sbjct: 225 NVHGMAASYYTGEITTHRTTGTLADGC-DVSRPGNLTYEIVRELVDDIVLVSEDEIRNSM 283
Query: 212 KLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVI 250
L + + + A AA + + V I
Sbjct: 284 IALIQRNKVITEGAGALACAALLSGKLDSHIQNRKTVSI 322
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer,
regulation, pyridoxal PHOS isoleucine biosynthesis; HET:
PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2
d.58.18.2
Length = 514
Score = 56.5 bits (137), Expect = 2e-09
Identities = 52/239 (21%), Positives = 85/239 (35%), Gaps = 43/239 (17%)
Query: 37 GLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT----DPAKGMKGAVQKAEEIL 92
G+AF +A + +I MP + + + +R FG E++L D AK KA E L
Sbjct: 93 GVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAK------AKAIE-L 145
Query: 93 AKTPNAYMLQQFENPANPKIHYE------TTGPELWKGSGGRIDALVSGIGTGGTITGAG 146
++ + F++P T EL + +D + +G GG G
Sbjct: 146 SQQQGFTWVPPFDHP-------MVIAGQGTLALELLQ-QDAHLDRVFVPVGGGGLAAGVA 197
Query: 147 KFLKEKNPNIKLYGIEPTESPV----LSGGKPGPHKIQGIGAGFV-------PGVLEVNI 195
+K+ P IK+ +E +S L G P + +G F G +
Sbjct: 198 VLIKQLMPQIKVIAVEAEDSACLKAALDAGH--PVDLPRVGL-FAEGVAVKRIGDETFRL 254
Query: 196 I----DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVI 250
D+++ V SD K L S A A + G+ + I
Sbjct: 255 CQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKKYIALHNIRGERLAHI 313
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human
cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo
sapiens}
Length = 318
Score = 55.6 bits (135), Expect = 3e-09
Identities = 58/291 (19%), Positives = 94/291 (32%), Gaps = 66/291 (22%)
Query: 2 LQKIG-------YSMI---SDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLII 51
+Q G + + L+ + GN GI A+ A I
Sbjct: 31 VQPSGSFKIRGIGHFCQEMAKKGCRHLVCS--------SGGNAGIAAAYAARKLGIPATI 82
Query: 52 TMPASMSLERRIILRAFGAELVLT----DPAKGMKGAVQKAEEILAKTPNAYMLQQFENP 107
+P S SL+ L+ GAE+ LT D A +A+E LAK + F++P
Sbjct: 83 VLPESTSLQVVQRLQGEGAEVQLTGKVWDEAN------LRAQE-LAKRDGWENVPPFDHP 135
Query: 108 ------ANPKIHYETTGPELWKGSGGRIDALV-SGIGTGGTITGAGKFLKEKNPNIKLYG 160
A + EL ALV + G G L+ ++ +
Sbjct: 136 LIWKGHA-------SLVQELKAVLRTPPGALVLAVGGGGLLAGVVAGLLEVGWQHVPIIA 188
Query: 161 IEPTESPV----LSGGKPGPHKI-----QGIGAGFVPGVLEVNII----DEVVQVSSDEA 207
+E + ++ GK + +GA + + V EA
Sbjct: 189 METHGAHCFNAAITAGKLVTLPDITSVAKSLGAK-TVAARALECMQVCKIHSEVVEDTEA 247
Query: 208 IETAKLLALKEGLFVGISSGGAAAAAI--------EIAKRPENAGKLIVVI 250
+ + L E + V + GAA AAI + + +VVI
Sbjct: 248 VSAVQQLLDDERMLVE-PACGAALAAIYSGLLRRLQAEGCLPPSLTSVVVI 297
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis,
defensive PROT jasmonic acid pathway, jasmonic
acid,structural genomics; HET: LLP 15P; 2.35A {Solanum
lycopersicum}
Length = 366
Score = 54.5 bits (132), Expect = 8e-09
Identities = 53/239 (22%), Positives = 83/239 (34%), Gaps = 43/239 (17%)
Query: 37 GLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT----DPAKGMKGAVQKAEEIL 92
G+A I MP + + +RA G ++VL D A+ A E L
Sbjct: 122 GVALAGQRLNCVAKIVMPTTTPQIKIDAVRALGGDVVLYGKTFDEAQ------THALE-L 174
Query: 93 AKTPNAYMLQQFENPANPKIHYE------TTGPELWKGSGGRIDALVSGIGTGGTITGAG 146
++ + F++P T G E+ + I A+ +G GG I G
Sbjct: 175 SEKDGLKYIPPFDDP-------GVIKGQGTIGTEINR-QLKDIHAVFIPVGGGGLIAGVA 226
Query: 147 KFLKEKNPNIKLYGIEPTESPV----LSGGKPGPHKIQGIGAGFVPGV---------LEV 193
F K+ PN K+ G+EP + L G F GV
Sbjct: 227 TFFKQIAPNTKIIGVEPYGAASMTLSLHEGHRVKLSNVDT---FADGVAVALVGEYTFAK 283
Query: 194 --NIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVI 250
+ID +V V++D K + + + S A A A + + + IV I
Sbjct: 284 CQELIDGMVLVANDGISAAIKDVYDEGRNILETSGAVAIAGAAAYCEFYKIKNENIVAI 342
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase;
substrate, PLP, crystal, complex, hydrolase; HET: PLP;
1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A*
1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*
Length = 338
Score = 44.1 bits (104), Expect = 2e-05
Identities = 25/181 (13%), Positives = 52/181 (28%), Gaps = 23/181 (12%)
Query: 88 AEEILAKTPNAYML-QQFENPANPKIHY---ETTGPELWKGSGGRIDALVSGIGTGGTIT 143
E + A Y + + + + G + D +V TG T
Sbjct: 145 LESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQA 204
Query: 144 GAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI--------GAGFVPGVLEVNI 195
G ++ G+ + +I I G +V +
Sbjct: 205 GMVVGFAADGRADRVIGV-----DASAKPAQTREQITRIARQTAEKVGLERDIMRADVVL 259
Query: 196 IDEVVQ----VSSDEAIETAKLLALKEGLFVG-ISSGGAAAAAIEIAKRPE-NAGKLIVV 249
+ + ++ +E +L A EG+ + G + IE+ + E G ++
Sbjct: 260 DERFAGPEYGLPNEGTLEAIRLCARTEGMLTDPVYEGKSMHGMIEMVRNGEFPEGSRVLY 319
Query: 250 I 250
Sbjct: 320 A 320
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or
tryptophan synthase BET like family, PLP dependent
enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium}
PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A*
4d8u_A* 4d8t_A* 4d92_A* 4d99_A*
Length = 342
Score = 40.5 bits (94), Expect = 3e-04
Identities = 55/263 (20%), Positives = 104/263 (39%), Gaps = 30/263 (11%)
Query: 10 ISDAEAKG---LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLE------ 60
++DA +G LIT G N A +AA + + +
Sbjct: 73 VADALREGADTLITAGAI------QSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLT 126
Query: 61 --RRIILRAFGAELVLTDPAKGM-KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETT 117
R++L F ++ + D A I A+ Y++ + A + Y +
Sbjct: 127 NGNRLLLDLFNTQIEMCDALTDPDAQLQTLATRIEAQGFRPYVIPVGGSSALGAMGYVES 186
Query: 118 GPELWK--GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPG 175
E+ + + ++V G+ GT G L+ P+++L G+ + S + KP
Sbjct: 187 ALEIAQQCEEVVGLSSVVVASGSAGTHAGLAVGLEHLMPDVELIGVTVSRSV--AEQKPK 244
Query: 176 PHKIQGIGAGFVPGV--LEVNIIDEVVQ----VSSDEAIETAKLLALKEGLFVG-ISSGG 228
+Q AG + ++++ D+ V +D +E KLLA EG+ + + +G
Sbjct: 245 VIALQQAIAGQLALTATADIHLWDDYFAPGYGVPNDAGMEAVKLLASLEGVLLDPVYTGK 304
Query: 229 AAAAAIE-IAKRPENAGKLIVVI 250
A A I+ I+++ N I+ I
Sbjct: 305 AMAGLIDGISQKRFNDDGPILFI 327
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 0.001
Identities = 33/165 (20%), Positives = 52/165 (31%), Gaps = 63/165 (38%)
Query: 145 AGKFLKEKNPNIKLYGI--------EPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVN-- 194
A K+ YG P + GG+ G + I + + E
Sbjct: 1649 ADNHFKDT------YGFSILDIVINNPVNLTIHFGGEKG----KRIRENYSAMIFETIVD 1698
Query: 195 -------IIDEVVQVSSDEAIETAK-LLALKE----GLFVGISSGGAAAAAIEIAK---- 238
I E+ + S+ + K LL+ + L + AA E K
Sbjct: 1699 GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTL------MEKAAFEDLKSKGL 1752
Query: 239 RPEN---AGKLIVVIFPSFGERY--LSSVLFESVRKEAESMTFEA 278
P + AG S GE Y L+S+ A+ M+ E+
Sbjct: 1753 IPADATFAGH-------SLGE-YAALASL--------ADVMSIES 1781
Score = 37.0 bits (85), Expect = 0.007
Identities = 45/220 (20%), Positives = 72/220 (32%), Gaps = 72/220 (32%)
Query: 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLE 60
++Q Y + A+ G TPGE L G TG + A I + S E
Sbjct: 243 VIQLAHY--VVTAKLLGF-TPGE--LRSYLKGATGHSQGLVTAV-----AIA--ETDSWE 290
Query: 61 ------RRIILRAF--GAELVLTDPAKGMK-GAVQKAEEILAKTPNAYML-------QQF 104
R+ I F G P + ++ + E P + ML +Q
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP-SPMLSISNLTQEQV 349
Query: 105 E------N---PANPKIHYETTGPELWKGSGGRIDALVSG----IGTG--GTITGAGKFL 149
+ N PA ++ I +LV+G + +G ++ G L
Sbjct: 350 QDYVNKTNSHLPAGKQVE---------------I-SLVNGAKNLVVSGPPQSLYGLNLTL 393
Query: 150 -KEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFVP 188
K K P+ G++ + P S K F+P
Sbjct: 394 RKAKAPS----GLDQSRIP-FSERKL------KFSNRFLP 422
Score = 32.3 bits (73), Expect = 0.22
Identities = 34/202 (16%), Positives = 61/202 (30%), Gaps = 87/202 (43%)
Query: 5 IGYSMISDAEAKGLITP---------GE--------SVL-IEPTSGNTGI------GLAF 40
+ + D ++KGLI GE V+ IE + + G+
Sbjct: 1739 MEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIE-----SLVEVVFYRGMTM 1793
Query: 41 MAAAKQ-------YRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQK-AEEIL 92
A + Y +I P ++ +F E A+Q E +
Sbjct: 1794 QVAVPRDELGRSNYGMIAINPGRVAA-------SFSQE------------ALQYVVERVG 1834
Query: 93 AKTPNAYMLQQFENPANPKIHYETTGPELWKGS----GGRIDALVSGIGTGGTITGAGKF 148
+T ++++ N Y + G + AL T+T F
Sbjct: 1835 KRT--GWLVE----IVN----YNV------ENQQYVAAGDLRAL-------DTVTNVLNF 1871
Query: 149 LKEKN-PNIKL---YGIEPTES 166
+K + I+L +E E
Sbjct: 1872 IKLQKIDIIELQKSLSLEEVEG 1893
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.028
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 149 LKEKNPNIKLYGIEPTESPVLS 170
LK+ ++KLY +P L+
Sbjct: 22 LKKLQASLKLY--ADDSAPALA 41
>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase,
tryptophan biosynthesis, pyridoxal phosphate; HET: IPL
PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB:
1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B*
2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B*
1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ...
Length = 396
Score = 34.0 bits (79), Expect = 0.046
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 198 EVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVV 249
+ V ++ DEA+E K L EG+ + S A A A+++ + +L+VV
Sbjct: 322 DYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVV 373
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase,
cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A
{Streptomyces SP} PDB: 4a10_A
Length = 447
Score = 33.6 bits (77), Expect = 0.062
Identities = 26/137 (18%), Positives = 45/137 (32%), Gaps = 12/137 (8%)
Query: 14 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 73
+ + G+ VLI SG G + S ++ +RA G +LV
Sbjct: 213 DRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAV---VSSAQKEAAVRALGCDLV 269
Query: 74 LTDPAKGMKGAVQK-AEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGS------G 126
+ G+ + ++ L + P I +E TG + S G
Sbjct: 270 INRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRVTFGLSVIVARRG 329
Query: 127 GRIDALVSGIGTGGTIT 143
G + + G +G T
Sbjct: 330 GTV--VTCGSSSGYLHT 344
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open
twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis
saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*
Length = 341
Score = 32.8 bits (74), Expect = 0.12
Identities = 20/143 (13%), Positives = 40/143 (27%), Gaps = 17/143 (11%)
Query: 120 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKI 179
G + D +V TG T G + + + I + +
Sbjct: 184 NQEVELGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAI-----DASFTSEKTKEQT 238
Query: 180 QGI------GAGFVPGVLEVNIIDEVVQ----VSSDEAIETAKLLALKEGLFV-GISSGG 228
I G + + V ++ IE + A +EG+ + G
Sbjct: 239 LRIANNTAKLIGVEHEFKDFTLDTRFAYPCYGVPNEGTIEAIRTCAEQEGVLTDPVYEGK 298
Query: 229 AAAAAIE-IAKRPENAGKLIVVI 250
+ I I + G ++ +
Sbjct: 299 SMQGLIALIKEDYFKPGANVLYV 321
>1x1q_A Tryptophan synthase beta chain; structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
2.50A {Thermus thermophilus}
Length = 418
Score = 31.0 bits (71), Expect = 0.35
Identities = 38/159 (23%), Positives = 59/159 (37%), Gaps = 40/159 (25%)
Query: 127 GRI-DALVSGIGTGGTITGA-GKFLKEKNPNIKLYGIEP----TESP----VLSGGKPG- 175
GR+ DAL++ +G G G F KL G+E + + GK G
Sbjct: 243 GRLPDALIAAVGGGSNAIGLFAPFAYLPEGRPKLIGVEAAGEGLSTGRHAASIGAGKRGV 302
Query: 176 ------------------PHKIQGIGAGF-VPGV------LEVNIIDEVVQVSSDEAIET 210
H + AG PGV + E V+ +EA+E
Sbjct: 303 LHGSYMYLLYDHDGQITPAHSVS---AGLDYPGVGPEHSYYADAGVAEYASVTDEEALEG 359
Query: 211 AKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVV 249
KLLA EG+ + S A A A ++ + +++V+
Sbjct: 360 FKLLARLEGIIPALESAHAIAYAAKVVPE-MDKDQVVVI 397
>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural
genomics/proteomics initiative, structural genomics,
lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP:
c.79.1.1 PDB: 1wdw_B*
Length = 388
Score = 30.2 bits (69), Expect = 0.63
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 198 EVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVV 249
E V V+ +EA++ L+ EG+ + S A A A+++AK + ++I+V
Sbjct: 318 EYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEM-SRDEIIIV 368
>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan
biosynthesis, structural genomics; 2.20A {Mycobacterium
tuberculosis} PDB: 2o2j_A
Length = 422
Score = 29.9 bits (68), Expect = 0.87
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 198 EVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVV 249
+ ++ EA++ LL EG+ I S A A A+++ G +IVV
Sbjct: 349 DYRPITDSEAMDAFGLLCRMEGIIPAIESAHAVAGALKLGVE-LGRGAVIVV 399
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 30.0 bits (68), Expect = 0.88
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Query: 19 ITPGESVLIEPTSGNTGIGLAF--MAAAKQYRLI-ITMPASMSLERRIILRAFGAELVLT 75
+TPG+ I+ G + +G + + I + E L+ GA V+T
Sbjct: 164 LTPGKDWFIQ-NGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVIT 222
Query: 76 DPAKGMKGAVQKAEEILAK 94
+ + +E + +
Sbjct: 223 EDQNNSREFGPTIKEWIKQ 241
>1wiw_A Glucose-6-phosphate isomerase like protein; riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.00A {Thermus thermophilus} SCOP: c.80.1.1
Length = 290
Score = 29.6 bits (66), Expect = 0.92
Identities = 12/90 (13%), Positives = 25/90 (27%), Gaps = 11/90 (12%)
Query: 163 PTESPVLSGGKPGPHKIQGIGAGFVPGVLEV--NIIDEVVQVSSDEAIETAKLLALKEGL 220
PV PGPH G G G +L + +E + + + +
Sbjct: 25 VGTGPVPGEAYPGPHAALGYGEGQFAALLSGLPDWGEEGTLFLLEGGYDLGEAAGMA--- 81
Query: 221 FVGISSGGAAAAAIEIAKRPENAGKLIVVI 250
+ + + + G + +
Sbjct: 82 LLAETGRA------RVVRVGFRPGVEVHIP 105
>3krt_A Crotonyl COA reductase; structural genomics, protein structure
initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces
coelicolor} PDB: 3hzz_A
Length = 456
Score = 29.8 bits (67), Expect = 0.97
Identities = 28/134 (20%), Positives = 48/134 (35%), Gaps = 16/134 (11%)
Query: 19 ITPGESVLIEPTSGNTGIGLAFMAAAKQY--RLIITMPASMSLERRIILRAFGAELVLTD 76
+ G++VLI SG G+G A I S ++ I RA GAE ++
Sbjct: 226 MKQGDNVLIWGASG--GLGSYATQFALAGGANPICV---VSSPQKAEICRAMGAEAIIDR 280
Query: 77 PAKGMKGAVQKAEEILAKTPN-AYMLQQFENPANPKIHYETTGPELWKGS------GGRI 129
A+G + + + + +++ + I +E G E + S GG I
Sbjct: 281 NAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRETFGASVFVTRKGGTI 340
Query: 130 DALVSGIGTGGTIT 143
+G
Sbjct: 341 --TTCASTSGYMHE 352
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 28.1 bits (63), Expect = 2.7
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 26/75 (34%)
Query: 30 TSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT--DPAKGMKGAVQK 87
T GN GIGL A + + R F ++VLT D +G AV
Sbjct: 10 TGGNKGIGL---AIVRD-----------------LCRLFSGDVVLTARDVTRGQA-AV-- 46
Query: 88 AEEILAKTPNAYMLQ 102
+++ A+ + Q
Sbjct: 47 -QQLQAEGLSPRFHQ 60
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like
fold, helix-turn-helix, transcription/DNA complex; 2.65A
{Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A
2phg_A 1vol_A*
Length = 207
Score = 28.1 bits (62), Expect = 2.9
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 204 SDEAIETAKLL---ALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVI 250
++ L ++ G ++ A+A + IA R E + I
Sbjct: 22 PRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEI 71
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; 2.30A {Thermus thermophilus}
Length = 343
Score = 27.9 bits (63), Expect = 3.5
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 16 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQY--RLIITMPASMSLERRIILRAFGAELV 73
K + PG+ VL+ G+ +A + AK + R+I T + S ++ +A GA+
Sbjct: 161 KLGVRPGDDVLVMAAGS--GVSVAAIQIAKLFGARVIAT---AGSEDKLRRAKALGADET 215
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics,
PSI, protein STRU initiative; 2.66A {Mycobacterium
tuberculosis} SCOP: c.2.1.1
Length = 198
Score = 27.2 bits (61), Expect = 5.2
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 19 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 71
++PGE VLI +G G+G+A ++ AK I A S +R +L G E
Sbjct: 36 LSPGERVLIHSATG--GVGMAAVSIAKMIGARIYTTAG-SDAKREMLSRLGVE 85
>1wd5_A Hypothetical protein TT1426; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
HET: MES; 2.00A {Thermus thermophilus} SCOP: c.61.1.1
Length = 208
Score = 27.2 bits (60), Expect = 5.8
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 127 GRIDALV-SGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESP 167
GR LV G+ TG ++ A + ++ P ++ P SP
Sbjct: 120 GRDVVLVDDGVATGASMEAALSVVFQEGPR-RVVVAVPVASP 160
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB);
hyperthermophIle, ribosome binding, complex (ribosome
binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei}
SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Length = 200
Score = 26.9 bits (59), Expect = 6.2
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 204 SDEAIETAKLL---ALKEGLFVGISSGGAAAAAIEIAKRPEN 242
E A L A+++GL G S AA + A R
Sbjct: 26 PRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLK 67
>3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A,
alternative splicing, hydrolase, phosphoprotein, serine
esterase; 2.00A {Homo sapiens} PDB: 3c5w_P
Length = 316
Score = 26.7 bits (59), Expect = 7.9
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 206 EAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVV-IFPSFGERYLSSV 262
+E + +G S GGA A + + L ++ + L+S+
Sbjct: 99 NVVEAMYGDLPPPIMLIGHSMGGAIAVHTASSNLVPSLLGLCMIDVVEGTAMDALNSM 156
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme,
oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A
{Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Length = 270
Score = 26.7 bits (59), Expect = 8.4
Identities = 9/30 (30%), Positives = 11/30 (36%), Gaps = 4/30 (13%)
Query: 105 ENPANPKIHY----ETTGPELWKGSGGRID 130
E P K+ Y E WK S G +
Sbjct: 193 EYPDRLKVWYVIDQVKRPEEGWKYSVGFVT 222
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 26.6 bits (59), Expect = 8.8
Identities = 9/60 (15%), Positives = 16/60 (26%), Gaps = 6/60 (10%)
Query: 11 SDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQY---RLIITMPASMSLERRIILRA 67
VL+ G IG+ F + Y + +E+ +I
Sbjct: 170 PVWTCDDGTLNCRKVLV---VGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEET 226
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure
initiative, PSI-biolo YORK structural genomics research
consortium; 2.20A {Sinorhizobium meliloti 1021}
Length = 363
Score = 26.8 bits (60), Expect = 8.8
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 16 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQY--RLIITMPASMSLERRIILRAFGAELV 73
KG + G+ V+++ T G+ L + AK +I+T S S E+ A GA+
Sbjct: 184 KGHLRAGDRVVVQGTG---GVALFGLQIAKATGAEVIVT---SSSREKLDRAFALGADHG 237
>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase
rotor, sodium-motive force, cell inner membrane, CF(0),
membrane, transport; HET: F09; 2.35A {Ilyobacter
tartaricus} PDB: 1yce_A*
Length = 89
Score = 25.0 bits (55), Expect = 9.9
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 214 LALKEGLFVGISSGGAAAAAIE-IAKRPENAGKLIVVIFPSFG 255
A+ G+ G+ G AA A+E +A++PE G +I +
Sbjct: 20 TAMIAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQA 62
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.135 0.373
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,421,749
Number of extensions: 295118
Number of successful extensions: 831
Number of sequences better than 10.0: 1
Number of HSP's gapped: 766
Number of HSP's successfully gapped: 79
Length of query: 278
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 186
Effective length of database: 4,133,061
Effective search space: 768749346
Effective search space used: 768749346
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (25.8 bits)