RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 023695
(278 letters)
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 320
Score = 262 bits (669), Expect = 1e-87
Identities = 226/274 (82%), Positives = 251/274 (91%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
IG+SMISDAE KGLI PGESVLIEPTSGNTG+GLAF AAAK Y+LIITMPASMS ERRII
Sbjct: 47 IGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRII 106
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG 124
L AFG ELVLTDPAKGMKGA+ KAEEILAKTPN YMLQQFENPANPKIHYETTGPE+WKG
Sbjct: 107 LLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKG 166
Query: 125 SGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGA 184
+GG+ID VSGIGTGGTITGAGK+LKE+N N+KLYG+EP ES +LSGGKPGPHKIQGIGA
Sbjct: 167 TGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGA 226
Query: 185 GFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAG 244
GF+P VL V++IDEVVQVSSDE+I+ A+ LALKEGL VGISSG AAAAAI++A+RPENAG
Sbjct: 227 GFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAG 286
Query: 245 KLIVVIFPSFGERYLSSVLFESVRKEAESMTFEA 278
KL V IFPSFGERYLS+VLF++ RKEAE+MTFEA
Sbjct: 287 KLFVAIFPSFGERYLSTVLFDATRKEAEAMTFEA 320
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermotoga maritima [TaxId: 2336]}
Length = 293
Score = 224 bits (572), Expect = 2e-73
Identities = 133/259 (51%), Positives = 178/259 (68%), Gaps = 6/259 (2%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
MI DAE +GL+ G ++EPTSGN GI +A + A + +R+I+TMP +MS+ERR +
Sbjct: 40 PALFMILDAEKRGLLKNG---IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKV 96
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG 124
L+ GAELVLT GMKGAV+KA E +++ A+ML QFENP N H TTGPE+ K
Sbjct: 97 LKMLGAELVLTPGELGMKGAVEKALE-ISRETGAHMLNQFENPYNVYSHQFTTGPEILKQ 155
Query: 125 SGGRIDALVSGIGTGGTITGAGKFLKEKNPN-IKLYGIEPTESPVLSGGKPGPHKIQGIG 183
+IDA V+G+GTGGTI+G G+ LK N +K+ +EP +SPVLSGG+PG H IQGIG
Sbjct: 156 MDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIG 215
Query: 184 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 243
AGFVP +L+ ++IDEV+ V +EA E A+ LA KEGL VGISSG AAA+++A++
Sbjct: 216 AGFVPKILDRSVIDEVITVEDEEAYEMARYLAKKEGLLVGISSGANVAAALKVAQKLG-P 274
Query: 244 GKLIVVIFPSFGERYLSSV 262
+V + P ERYLS +
Sbjct: 275 DARVVTVAPDHAERYLSIL 293
>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine
synthase) {Haemophilus influenzae [TaxId: 727]}
Length = 310
Score = 204 bits (519), Expect = 3e-65
Identities = 145/268 (54%), Positives = 188/268 (70%), Gaps = 9/268 (3%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
IG +M+ AE G +T G +++ TSGNTGI LA++AAA+ Y++ +TMP +MSLER+ +
Sbjct: 44 IGANMVWQAEKDGTLTKG-KEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRL 102
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNA-YMLQQFENPANPKIHYETTGPELWK 123
L G LVLT+ AKGMKGA+ KAEEI+A P+ ML+QFENPANP+IH ETTGPE+WK
Sbjct: 103 LCGLGVNLVLTEGAKGMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWK 162
Query: 124 GSGGRIDALVSGIGTGGTITGAGKFLKE-KNPNIKLYGIEPTESPVLSGGKPG------P 176
+ G++D +V+G+GTGG+ITG + +K I +EP ESPV+S G P
Sbjct: 163 DTDGKVDVVVAGVGTGGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGP 222
Query: 177 HKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEI 236
HKIQGIGAGF+P L+++IID V V SD A+ TA+ L +EG+ GISSG A AAA +
Sbjct: 223 HKIQGIGAGFIPKNLDLSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAADRL 282
Query: 237 AKRPENAGKLIVVIFPSFGERYLSSVLF 264
AK PE A KLIVVI PS ERYLS+ LF
Sbjct: 283 AKLPEFADKLIVVILPSASERYLSTALF 310
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermus thermophilus [TaxId: 274]}
Length = 302
Score = 194 bits (493), Expect = 2e-61
Identities = 135/261 (51%), Positives = 187/261 (71%), Gaps = 3/261 (1%)
Query: 5 IGYSMISDAEAKGLITPG-ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 63
+ MI DAE +G++ PG V++EPTSGNTGIGLA +AA++ YRLI+TMPA MS ER+
Sbjct: 43 PAWYMIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKR 102
Query: 64 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 123
+L+AFGAELVLTDP + M A ++A + + A+M QF+NPAN + HYETTGPEL++
Sbjct: 103 VLKAFGAELVLTDPERRMLAAREEALRL-KEELGAFMPDQFKNPANVRAHYETTGPELYE 161
Query: 124 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 183
GRIDA V G GTGGTITG G++LKE+ P++K+ +EP S VLSGGK G H QG+G
Sbjct: 162 ALEGRIDAFVYGSGTGGTITGVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGMG 221
Query: 184 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 243
GF+P L+++++D V+QV ++A A+ LA +EGLF+G+SSGG AA+++A+
Sbjct: 222 PGFIPENLDLSLLDGVIQVWEEDAFPLARRLAREEGLFLGMSSGGIVWAALQVARE-LGP 280
Query: 244 GKLIVVIFPSFGERYLSSVLF 264
GK + I P G +YLS+ L+
Sbjct: 281 GKRVACISPDGGWKYLSTPLY 301
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Salmonella typhimurium [TaxId: 90371]}
Length = 302
Score = 190 bits (484), Expect = 5e-60
Identities = 138/260 (53%), Positives = 190/260 (73%), Gaps = 10/260 (3%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
IG +MI DAE +G++ PG L+EPT+GNTGI LA++AAA+ Y+L +TMP +MS+ERR +
Sbjct: 44 IGANMIWDAEKRGVLKPGV-ELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKL 102
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNA-YMLQQFENPANPKIHYETTGPELWK 123
L+A GA LVLT+ AKGMKGA+QKAEEI+A P +LQQF NPANP+IH +TTGPE+W+
Sbjct: 103 LKALGANLVLTEGAKGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWE 162
Query: 124 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLY--GIEPTESPVLSGGK------PG 175
+ G++D +SG+GTGGT+TG +++K L +EPT+SPV++ PG
Sbjct: 163 DTDGQVDVFISGVGTGGTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIKPG 222
Query: 176 PHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIE 235
PHKIQGIGAGF+PG L++ +ID+VV ++++EAI TA+ L +EG+ GISSG A AAA++
Sbjct: 223 PHKIQGIGAGFIPGNLDLKLIDKVVGITNEEAISTARRLMEEEGILAGISSGAAVAAALK 282
Query: 236 IAKRPENAGKLIVVIFPSFG 255
+ + K IVVI PS G
Sbjct: 283 LQEDESFTNKNIVVILPSSG 302
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 355
Score = 192 bits (488), Expect = 5e-60
Identities = 102/274 (37%), Positives = 155/274 (56%), Gaps = 10/274 (3%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
I MI DAE G + P +IEPTSGNTGIGLA AA + YR II MP MS E+ +
Sbjct: 80 ISLRMIEDAERDGTLKP-GDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDV 138
Query: 65 LRAFGAELVLTDPAKGM---KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPEL 121
LRA GAE+V T + V A + + PN+++L Q+ N +NP HY+TT E+
Sbjct: 139 LRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEI 198
Query: 122 WKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGK-----PGP 176
+ G++D LV+ +GTGGTITG + LKEK P ++ G++P S + +
Sbjct: 199 LQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTT 258
Query: 177 HKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEI 236
++++GIG F+P VL+ ++D+ + + +EA A++L +EGL G S+G A A++
Sbjct: 259 YEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKA 318
Query: 237 AKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 270
A+ + G+ VVI P Y++ L + +
Sbjct: 319 AQELQ-EGQRCVVILPDSVRNYMTKFLSDRWMLQ 351
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine
synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 382
Score = 173 bits (439), Expect = 2e-52
Identities = 59/261 (22%), Positives = 116/261 (44%), Gaps = 15/261 (5%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
+IS + + G S++ + TS N G+ L+ +A YR + +P + +++
Sbjct: 129 PAVEIISRLSRR--VEKG-SLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLL 185
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK- 123
R GA++++ A + + + +K + QF N AN + H T E++
Sbjct: 186 PRLLGAQVIVDPEAPSTVHLLPRVMKD-SKNEGFVHVNQFYNDANFEAHMRGTAREIFVQ 244
Query: 124 --GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQG 181
G + + +GT G ++ A +L+ +P+I+ ++P + + G + +
Sbjct: 245 SRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPGIRRVETGMLW 304
Query: 182 IGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 241
I ++I + +V+ +EA+E +A +GL +G S G A A + A +
Sbjct: 305 INM--------LDISYTLAEVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEGD 356
Query: 242 NAGKLIVVIFPSFGERYLSSV 262
VV+ P G +YLS V
Sbjct: 357 LEPGDYVVVVPDTGFKYLSLV 377
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine
synthase) {Escherichia coli, isoform B (CysM) [TaxId:
562]}
Length = 292
Score = 167 bits (424), Expect = 3e-51
Identities = 110/260 (42%), Positives = 162/260 (62%), Gaps = 11/260 (4%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
SMI +AE +G I PG+ + IE TSGNTGI LA +AA K YR+ + MP +MS ERR
Sbjct: 43 AALSMIVEAEKRGEIKPGDVL-IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAA 101
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG 124
+RA+GAEL+L +GM+GA + +A +L QF NP NP HY TTGPE+W+
Sbjct: 102 MRAYGAELILVTKEQGMEGA-RDLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQ 160
Query: 125 SGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGA 184
+GGRI VS +GT GTITG +F++E++ + + G++P E + G + P
Sbjct: 161 TGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPT------- 213
Query: 185 GFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAG 244
++PG+ +++DEV+ + +A T + LA++EG+F G+SSGGA A A+ +AK N
Sbjct: 214 EYLPGIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAK--ANPD 271
Query: 245 KLIVVIFPSFGERYLSSVLF 264
++V I G+RYLS+ +F
Sbjct: 272 AVVVAIICDRGDRYLSTGVF 291
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli
[TaxId: 562]}
Length = 331
Score = 119 bits (299), Expect = 2e-32
Identities = 53/273 (19%), Positives = 95/273 (34%), Gaps = 26/273 (9%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
Y+M++ + +I ++GN G+AF +A + +I MP + + +
Sbjct: 61 GAYAMMAGLTEEQ----KAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDA 116
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG 124
+R FG E++L A L++ + F++P I + T
Sbjct: 117 VRGFGGEVLLHGANFDEAKAKA---IELSQQQGFTWVPPFDHP--MVIAGQGTLALELLQ 171
Query: 125 SGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQ---- 180
+D + +G GG G +K+ P IK+ +E +S L H +
Sbjct: 172 QDAHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRV 231
Query: 181 -----GIGAGFVPGV---LEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAA 232
G+ + L +D+++ V SD K L S A A
Sbjct: 232 GLFAEGVAVKRIGDETFRLCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAG 291
Query: 233 AIEIAKRPENAGKLIVVIFP-----SFGERYLS 260
+ G+ + I G RY+S
Sbjct: 292 MKKYIALHNIRGERLAHILSGANVNFHGLRYVS 324
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Pseudomonas sp., strain ACP [TaxId: 306]}
Length = 338
Score = 103 bits (256), Expect = 2e-26
Identities = 40/270 (14%), Positives = 81/270 (30%), Gaps = 27/270 (10%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
+I +A A+G T V I N +A +AA + ++ ++ +
Sbjct: 54 KLEYLIPEALAQGCDTL---VSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVY 110
Query: 65 LRAFGAEL----------VLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHY 114
R ++ V G + + + A E + +P
Sbjct: 111 DRVGNIQMSRILGADVRLVPDGFDIGFRRSWEDALESVRAAGGKPYAIPAGCSDHPLGGL 170
Query: 115 ETTGPELW-----KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVL 169
G G + D +V TG T G ++ G++ + P
Sbjct: 171 GFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGVDASAKPAQ 230
Query: 170 SGGKPGPHKIQGIGAGFVPG-------VLEVNIIDEVVQVSSDEAIETAKLLALKEGLFV 222
+ + Q + VL+ + ++ +E +L A EG+
Sbjct: 231 TREQITRIARQTAEKVGLERDIMRADVVLDERFAGPEYGLPNEGTLEAIRLCARTEGMLT 290
Query: 223 G-ISSGGAAAAAIEIAKRPE-NAGKLIVVI 250
+ G + IE+ + E G ++
Sbjct: 291 DPVYEGKSMHGMIEMVRNGEFPEGSRVLYA 320
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14
(SPCC320.14, SPCC330.15c) {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 318
Score = 102 bits (254), Expect = 4e-26
Identities = 48/258 (18%), Positives = 101/258 (39%), Gaps = 23/258 (8%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
+ +S ++ ++ +SGN +A A I MP +
Sbjct: 55 GALNALSQLNEA----QRKAGVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAA 110
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG 124
+ +G ++++ D K + + K +++ ++ +++P + T EL++
Sbjct: 111 TKGYGGQVIMYDRYKDDREKMAKE---ISEREGLTIIPPYDHP-HVLAGQGTAAKELFE- 165
Query: 125 SGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS------------GG 172
G +DAL +G GG ++G+ + PN ++YG+EP
Sbjct: 166 EVGPLDALFVCLGGGGLLSGSALAARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTP 225
Query: 173 KPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAA 232
K Q G + +D+++ VS +E I+ K A + + V + + AA
Sbjct: 226 KTIADGAQTQHLGNYTFSIIKEKVDDILTVSDEELIDCLKFYAARMKIVVEPTGCLSFAA 285
Query: 233 AIEIAKRPENAGKLIVVI 250
A + ++ + K I +I
Sbjct: 286 ARAMKEKLK--NKRIGII 301
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 386
Score = 101 bits (251), Expect = 3e-25
Identities = 51/283 (18%), Positives = 100/283 (35%), Gaps = 45/283 (15%)
Query: 25 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPA---SMSLERRIILRAFGAELVLTDP-AKG 80
++ E +G G+ A A ++ I M A ++ GA ++ + ++
Sbjct: 101 LIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRT 160
Query: 81 MKGAVQKAEEILAKTP------NAYMLQQFENPANPKIHYETTGPEL---WKGSGGRIDA 131
+K A+ +A T ++ P + G E + G++
Sbjct: 161 LKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPD 220
Query: 132 LVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSG--------GKPGP------- 176
++ GG+ + + +KL G+E + SG G+ G
Sbjct: 221 VIVACVGGGSNAMGIFYPFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSY 280
Query: 177 ----------------HKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGL 220
+ G G L+ E V V+ +EA++ L+ EG+
Sbjct: 281 FLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGI 340
Query: 221 FVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVL 263
+ S A A A+++AK + ++I+V G++ L VL
Sbjct: 341 IPALESAHAVAYAMKLAKE-MSRDEIIIVNLSGRGDKDLDIVL 382
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 325
Score = 91.7 bits (226), Expect = 4e-22
Identities = 43/254 (16%), Positives = 85/254 (33%), Gaps = 12/254 (4%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
++ DA +KG + + N A I+ + L+ +
Sbjct: 57 KLEYLLGDALSKGADVV---ITVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYL 113
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEIL----AKTPNAYMLQQFENPANPKIHYETTGPE 120
L AK ++ AEEI + Y++ + Y E
Sbjct: 114 LDKIMGIETRVYDAKDSFELMKYAEEIAEELKREGRKPYVIPPGGASPIGTLGYVRAVGE 173
Query: 121 LWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQ 180
+ S + D++V G+GGT+ G L N +I+ GI + K +
Sbjct: 174 IATQSEVKFDSIVVAAGSGGTLAGLSLGLSILNEDIRPVGIAVGRFGEVMTSKLDNLIKE 233
Query: 181 GI---GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVG-ISSGGAAAAAIEI 236
G + + E + + + +EG+ + + +G A +++
Sbjct: 234 AAELLGVKVEVRPELYDYSFGEYGKITGEVAQIIRKVGTREGIILDPVYTGKAFYGLVDL 293
Query: 237 AKRPENAGKLIVVI 250
A++ E G+ I+ I
Sbjct: 294 ARKGE-LGEKILFI 306
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Yeast (Hansenula saturnus) [TaxId: 4906]}
Length = 341
Score = 90.5 bits (223), Expect = 1e-21
Identities = 33/271 (12%), Positives = 71/271 (26%), Gaps = 28/271 (10%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
++ D V I N +A +AA + ++ + +
Sbjct: 54 KLEYIVPDIVEGDYTHL---VSIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEK 110
Query: 65 LRAFGAELVLTDPAKG-------------MKGAVQKAEEILAKTPNAYMLQQFENPANPK 111
+ G M+ + A + L + +
Sbjct: 111 DVYNRVGNIELSRIMGADVRVIEDGFDIGMRKSFANALQELEDAGHKPYPIPAGCSEHKY 170
Query: 112 IH-----YETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTES 166
+ G + D +V TG T G + + + I+ + +
Sbjct: 171 GGLGFVGFADEVINQEVELGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFT 230
Query: 167 -----PVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLF 221
K+ G+ F L+ V ++ IE + A +EG+
Sbjct: 231 SEKTKEQTLRIANNTAKLIGVEHEFKDFTLDTRFAYPCYGVPNEGTIEAIRTCAEQEGVL 290
Query: 222 VG-ISSGGAAAAAIEIAKRPE-NAGKLIVVI 250
+ G + I + K G ++ +
Sbjct: 291 TDPVYEGKSMQGLIALIKEDYFKPGANVLYV 321
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus
thermophilus [TaxId: 274]}
Length = 310
Score = 87.4 bits (215), Expect = 1e-20
Identities = 46/263 (17%), Positives = 92/263 (34%), Gaps = 32/263 (12%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
S E L+ +SGN G+A+ A + ++ MP S ++
Sbjct: 53 GALSKALALE-------NPKGLLAVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKAC 105
Query: 65 LRAFGAEL--VLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 122
RA+GAE+ + A EE ++ F++P L
Sbjct: 106 ARAYGAEVVDRGVTAKNREEVARALQEE-----TGYALIHPFDDPLVIAGQGTAGLELLA 160
Query: 123 --KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESP------------- 167
G A+++ +G GG + G +K +P + G+EP +
Sbjct: 161 QAGRMGVFPGAVLAPVGGGGLLAGLATAVKALSPTTLVLGVEPEAADDAKRSLEAGRILR 220
Query: 168 VLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSG 227
+ + + ++ + G + +D ++ VS + +E +LL + V +
Sbjct: 221 LEAPPRTRADGVRTLSLGERTFPILRERVDGILTVSEEALLEAERLLFTRTKQVVEPTGA 280
Query: 228 GAAAAAIEIAKRPENAGKLIVVI 250
AA +E R + + ++
Sbjct: 281 LPLAAVLEHGARL---PQTLALL 300
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 390
Score = 79.9 bits (196), Expect = 1e-17
Identities = 48/269 (17%), Positives = 84/269 (31%), Gaps = 44/269 (16%)
Query: 26 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASM---SLERRIILRAFGAELVLTDP-AKGM 81
+ E +G G+ A +A + I M A +R GAE++ + +
Sbjct: 106 IAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATL 165
Query: 82 KGAVQKAEEILAKTP------NAYMLQQFENPANPKIHYETTGPEL---WKGSGGRIDAL 132
K A +A + + P + G E GR+
Sbjct: 166 KDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDA 225
Query: 133 VSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSG--------GKPG--------- 175
V GG+ + ++ L G+EP + +G G+ G
Sbjct: 226 VIACVGGGSNAIGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPM 285
Query: 176 --------------PHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLF 221
+ G L + V ++ DEA+E K L EG+
Sbjct: 286 MQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGII 345
Query: 222 VGISSGGAAAAAIEIAKRPENAGKLIVVI 250
+ S A A A+++ + +L+VV
Sbjct: 346 PALESSHALAHALKMMREQPEKEQLLVVN 374
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 477
Score = 71.6 bits (174), Expect = 8e-15
Identities = 37/300 (12%), Positives = 82/300 (27%), Gaps = 32/300 (10%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
++S + + ++G+T L+ A+ I+ +PA+ +
Sbjct: 157 GMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKI-SMAQL 215
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG 124
++ + G ++ EI L N + L +
Sbjct: 216 VQPIANGAFVLSIDTDFDGCMKLIREI--TAELPIYLANSLNSLRLEGQKTAAIEILQQF 273
Query: 125 SGGRIDALVSGIGTGGTITGAGKFLKEKN--------PNIKLYGIEPTESPVLSG----- 171
D ++ G G I K K P + L
Sbjct: 274 DWQVPDWVIVPGGNLGNIYAFYKGFKMCQELGLVDRIPRMVCAQAANANPLYLHYKSGWK 333
Query: 172 ---GKPGPHKIQGIGAGFVPGVLE-----VNIIDEVVQVSSDEAIETAKLLALKEGLFVG 223
P ++ + + +V+ +++E + A A G+F+
Sbjct: 334 DFKPMTASTTFASAIQIGDPVSIDRAVYALKKCNGIVEEATEEELMDAMAQADSTGMFIC 393
Query: 224 ISSGGAAAAAIEIAKRPE-NAGKLIVVI-------FPSFGERYLSSVLFESVRKEAESMT 275
+G A A ++ + VV+ F Y S+ + + + +
Sbjct: 394 PHTGVALTALFKLRNQGVIAPTDRTVVVSTAHGLKFTQSKIDYHSNAIPDMACRFSNPPV 453
>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus
[TaxId: 274]}
Length = 351
Score = 70.5 bits (171), Expect = 2e-14
Identities = 37/273 (13%), Positives = 75/273 (27%), Gaps = 24/273 (8%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
+S A G ++GNT A AA I+ +PA ++
Sbjct: 64 GMTLAVSKAVEGGAQAV-----ACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVA 118
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG 124
++ + + + +T E+
Sbjct: 119 QSLVHGARIVQVEGNFDDALRLTQKLT----EAFPVALVNSVNPHRLEGQKTLAFEVVDE 174
Query: 125 SGGRIDALVSGIGTGGTITGAGKFLKEK------NPNIKLYGIEPTESPVLSGGKPGPHK 178
G +G G IT K ++ G + + L G+P
Sbjct: 175 LGDAPHYHALPVGNAGNITAHWMGYKAYHALGKAKRLPRMLGFQAAGAAPLVLGRPVERP 234
Query: 179 --------IQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAA 230
I + + + V+ +E + + LA +EG+F +S A
Sbjct: 235 ETLATAIRIGNPASWQGAVRAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEPASAAAM 294
Query: 231 AAAIEIAKRPE-NAGKLIVVIFPSFGERYLSSV 262
A ++ + +V+ G + ++
Sbjct: 295 AGVFKLLREGRLEPESTVVLTLTGHGLKDPATA 327
>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 319
Score = 64.4 bits (155), Expect = 2e-12
Identities = 34/264 (12%), Positives = 67/264 (25%), Gaps = 26/264 (9%)
Query: 6 GYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIIL 65
+G + ++GN G+ A+ A I +P + L
Sbjct: 42 IGHFCKRWAKQGCAH-----FVCSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERL 96
Query: 66 RAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGS 125
+ GA + + A+ + P + F++P + H
Sbjct: 97 KNEGATCKVVGELLDEAF--ELAKALAKNNPGWVYIPPFDDPLIWEGHASIVKELKETLW 154
Query: 126 GGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI------------EPTESPVLSGGK 173
+S G G + ++ + + + L
Sbjct: 155 EKPGAIALSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKIT 214
Query: 174 PGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAA 233
+ G L +S EA+ + E + V + G A AA
Sbjct: 215 SVAKALGVKTVGSQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAV 274
Query: 234 I-------EIAKRPENAGKLIVVI 250
++ +VVI
Sbjct: 275 YSHVIQKLQLEGNLRTPLPSLVVI 298
>d1xvha1 a.8.1.2 (A:3-72) Ebh protein {Staphylococcus aureus [TaxId:
1280]}
Length = 70
Score = 27.4 bits (61), Expect = 0.48
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 84 AVQKAEEILAKTPNAYMLQQ 103
AV AE IL K +
Sbjct: 35 AVSAAETILNKQTGPNTAKT 54
>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo
sapiens), different isozymes [TaxId: 9606]}
Length = 176
Score = 28.0 bits (61), Expect = 0.81
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 6/64 (9%)
Query: 6 GYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIIL 65
GY + + PG + G + A R+I ++ ++
Sbjct: 16 GYGAAVNT---AKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVD---INKDKFARA 69
Query: 66 RAFG 69
+ FG
Sbjct: 70 KEFG 73
>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus
callarias) [TaxId: 8053]}
Length = 175
Score = 26.9 bits (58), Expect = 1.9
Identities = 8/57 (14%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
Query: 17 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 73
+ PG + + + +A R+I ++ ++ + FGA
Sbjct: 24 AKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVD---LNPDKFEKAKVFGATDF 77
>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus
subtilis [TaxId: 1423]}
Length = 167
Score = 26.9 bits (58), Expect = 2.4
Identities = 12/54 (22%), Positives = 20/54 (37%)
Query: 14 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRA 67
E GL SVL+ +G G M + Y ++ + + + L A
Sbjct: 16 EQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGA 69
>d1nbwb_ c.51.3.2 (B:) Glycerol dehydratase reactivase, beta subunit
{Klebsiella pneumoniae [TaxId: 573]}
Length = 113
Score = 25.9 bits (57), Expect = 2.5
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 189 GVLEVNIIDEVVQVS-SDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 243
G+ E + + + +A L A L VGI + A+ A+ P +A
Sbjct: 24 GLEEQGVPCQTITYDGGGDAAALGALAARSSPLRVGIGLSASGEIALTHAQLPADA 79
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS)
{Escherichia coli [TaxId: 562]}
Length = 322
Score = 26.5 bits (57), Expect = 3.4
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 10/43 (23%)
Query: 124 GSGGRIDALVSGIGTGGTITGAG---------KFLKEKNPNIK 157
+GGR D LV +G G G ++ NP K
Sbjct: 280 CAGGRYDGLVEQLG-GRATPAVGFAMGLERLVLLVQAVNPEFK 321
>d2nrka1 d.218.1.14 (A:4-170) Hypothetical protein GrpB
{Enterococcus faecalis [TaxId: 1351]}
Length = 167
Score = 25.7 bits (56), Expect = 4.2
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 178 KIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLF 221
K++ IG+ VP + IID +V V E ++ + + G
Sbjct: 30 KVEHIGSTSVPNLAAKPIIDFLVIVEEIEKVDLLQWEFERIGYE 73
>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus
musculus), class II [TaxId: 10090]}
Length = 174
Score = 25.7 bits (55), Expect = 4.9
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 16 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFG 69
+TPG + + G +GL+ + K + ++ E+ +A G
Sbjct: 23 TAKVTPGSTCAV---FGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALG 73
>d1wiwa_ c.80.1.1 (A:) Glucose-6-phosphate isomerase-like protein
TTHA1346 {Thermus thermophilus [TaxId: 274]}
Length = 284
Score = 25.6 bits (56), Expect = 6.0
Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 8/84 (9%)
Query: 164 TESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGL-FV 222
PV PGPH G G G +L + + + + +E L G+ +
Sbjct: 26 GTGPVPGEAYPGPHAALGYGEGQFAALLSG--LPDWGEEGTLFLLEGGYDLGEAAGMALL 83
Query: 223 GISSGG-----AAAAAIEIAKRPE 241
+ +E+ P
Sbjct: 84 AETGRARVVRVGFRPGVEVHIPPS 107
>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus
caballus) [TaxId: 9796]}
Length = 176
Score = 25.3 bits (54), Expect = 7.6
Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Query: 16 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFG 69
+T G + + G + AA R+I ++ ++ + G
Sbjct: 23 VAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVD---INKDKFAKAKEVG 73
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.135 0.373
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,020,780
Number of extensions: 49887
Number of successful extensions: 172
Number of sequences better than 10.0: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 37
Length of query: 278
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 194
Effective length of database: 1,254,276
Effective search space: 243329544
Effective search space used: 243329544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (23.9 bits)