Query 023696
Match_columns 278
No_of_seqs 221 out of 1587
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 11:14:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023696.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023696hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayj_A 50S ribosomal protein L 85.5 0.31 1.1E-05 32.2 1.4 30 144-173 16-45 (56)
2 1z2q_A LM5-1; membrane protein 83.8 0.89 3E-05 32.5 3.4 28 144-171 18-47 (84)
3 3j21_g 50S ribosomal protein L 81.6 0.27 9.2E-06 32.1 -0.2 29 145-173 12-40 (51)
4 1x4u_A Zinc finger, FYVE domai 81.5 1.2 4.3E-05 31.7 3.4 26 146-171 13-40 (84)
5 2yw8_A RUN and FYVE domain-con 80.2 1.1 3.7E-05 31.9 2.7 27 145-171 17-45 (82)
6 1vfy_A Phosphatidylinositol-3- 79.1 1.3 4.3E-05 30.8 2.7 24 148-171 12-37 (73)
7 1dvp_A HRS, hepatocyte growth 77.7 1.8 6.2E-05 36.5 3.8 25 147-171 161-187 (220)
8 1wfl_A Zinc finger protein 216 76.9 2.9 0.0001 29.2 3.9 40 146-186 24-68 (74)
9 3zyq_A Hepatocyte growth facto 75.4 1.5 5.1E-05 37.3 2.6 25 147-171 164-190 (226)
10 1y02_A CARP2, FYVE-ring finger 75.3 1.3 4.4E-05 34.1 2.0 23 148-170 20-44 (120)
11 1wfk_A Zinc finger, FYVE domai 71.2 2.7 9.3E-05 30.3 2.8 25 147-171 9-35 (88)
12 1joc_A EEA1, early endosomal a 70.5 2 6.7E-05 33.2 2.0 25 147-171 69-95 (125)
13 3t7l_A Zinc finger FYVE domain 68.6 2.7 9.2E-05 30.4 2.3 25 147-171 20-46 (90)
14 1wfh_A Zinc finger (AN1-like) 47.8 22 0.00076 24.0 3.8 40 146-186 14-58 (64)
15 2dkt_A Ring finger and CHY zin 47.8 6.5 0.00022 31.0 1.3 42 145-186 81-126 (143)
16 1wil_A KIAA1045 protein; ring 43.8 17 0.00059 26.0 2.9 25 146-170 14-38 (89)
17 2dkt_A Ring finger and CHY zin 42.1 6.9 0.00024 30.9 0.7 31 149-179 103-136 (143)
18 2cr8_A MDM4 protein; ZF-ranbp 40.2 11 0.00037 24.3 1.2 21 149-169 13-33 (53)
19 1wff_A Riken cDNA 2810002D23 p 39.2 28 0.00095 24.9 3.4 40 146-186 24-69 (85)
20 2jrp_A Putative cytoplasmic pr 38.7 15 0.00051 26.1 1.9 12 161-172 18-29 (81)
21 2jne_A Hypothetical protein YF 38.4 12 0.0004 27.6 1.3 31 148-179 33-65 (101)
22 1wg2_A Zinc finger (AN1-like) 38.3 28 0.00097 23.4 3.2 39 147-186 15-58 (64)
23 1wfp_A Zinc finger (AN1-like) 38.0 50 0.0017 22.9 4.4 41 146-187 24-69 (74)
24 2c6a_A Ubiquitin-protein ligas 36.3 13 0.00044 23.4 1.1 22 148-169 14-35 (46)
25 3mpx_A FYVE, rhogef and PH dom 34.6 8.3 0.00028 35.3 0.0 24 147-170 375-400 (434)
26 3u5e_m 60S ribosomal protein L 34.2 9.7 0.00033 28.9 0.3 25 146-170 92-118 (128)
27 2vrw_B P95VAV, VAV1, proto-onc 33.8 21 0.00072 32.3 2.6 29 145-173 355-386 (406)
28 3jyw_9 60S ribosomal protein L 31.4 13 0.00043 25.8 0.5 28 145-172 24-55 (72)
29 1ffk_W Ribosomal protein L37AE 30.8 21 0.00071 24.8 1.5 32 142-173 22-57 (73)
30 1twf_L ABC10-alpha, DNA-direct 25.6 31 0.001 23.6 1.6 25 148-172 29-56 (70)
31 2pg3_A Queuosine biosynthesis 24.7 16 0.00056 30.3 0.2 19 157-175 191-209 (232)
32 3gj3_B Nuclear pore complex pr 22.1 35 0.0012 19.8 1.2 20 149-168 9-28 (33)
33 3izc_m 60S ribosomal protein R 21.7 23 0.00079 25.7 0.4 29 145-173 34-66 (92)
34 1h7d_A Aminolevulinic acid syn 21.7 28 0.00095 22.2 0.7 13 173-185 6-18 (49)
35 3bl5_A Queuosine biosynthesis 21.5 20 0.00068 29.1 0.0 18 157-174 188-205 (219)
No 1
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=85.46 E-value=0.31 Score=32.22 Aligned_cols=30 Identities=17% Similarity=0.140 Sum_probs=25.0
Q ss_pred CCCCCCCCCCCCCCCCCcccccccceeecc
Q 023696 144 SELGVDPDNENSLSRKRVRYCKICKAHVEG 173 (278)
Q Consensus 144 ~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~r 173 (278)
.....+|..|..+-|+|+..|+.||.--+|
T Consensus 16 ~~~k~ICrkC~ARnp~~A~~CRKCg~~~LR 45 (56)
T 2ayj_A 16 VFLKKVCRKCGALNPIRATKCRRCHSTNLR 45 (56)
T ss_dssp SCCCEEETTTCCEECTTCSSCTTTCCCCEE
T ss_pred HhchhhhccccCcCCcccccccCCCCCCCC
Confidence 345678999999999999999999865544
No 2
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=83.78 E-value=0.89 Score=32.52 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=19.9
Q ss_pred CCCCCCCCCCCCC--CCCCcccccccceee
Q 023696 144 SELGVDPDNENSL--SRKRVRYCKICKAHV 171 (278)
Q Consensus 144 ~~~~~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (278)
+.....|..|+.. --.|-|||+.||+-+
T Consensus 18 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 47 (84)
T 1z2q_A 18 DEDAPACNGCGCVFTTTVRRHHCRNCGYVL 47 (84)
T ss_dssp TTTCCBCTTTCCBCCTTSCCEECTTTCCEE
T ss_pred CCCCCCCcCcCCccccchhcccccCCCcEE
Confidence 3445678888753 346889999998753
No 3
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=81.55 E-value=0.27 Score=32.05 Aligned_cols=29 Identities=7% Similarity=-0.105 Sum_probs=24.4
Q ss_pred CCCCCCCCCCCCCCCCcccccccceeecc
Q 023696 145 ELGVDPDNENSLSRKRVRYCKICKAHVEG 173 (278)
Q Consensus 145 ~~~~~C~~C~~~kP~Rs~HC~~C~~CV~r 173 (278)
.....|+.|....|+++..|+.||.--+|
T Consensus 12 ~~k~iCpkC~a~~~~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 12 FKKYVCLRCGATNPWGAKKCRKCGYKRLR 40 (51)
T ss_dssp SSEEECTTTCCEECTTCSSCSSSSSCCCE
T ss_pred hCCccCCCCCCcCCCCceecCCCCCcccc
Confidence 45578999999999999999999875444
No 4
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.49 E-value=1.2 Score=31.70 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=18.9
Q ss_pred CCCCCCCCCCC--CCCCcccccccceee
Q 023696 146 LGVDPDNENSL--SRKRVRYCKICKAHV 171 (278)
Q Consensus 146 ~~~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (278)
....|..|+.. --.|-|||+.||+-+
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vf 40 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSF 40 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEE
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEE
Confidence 34678888753 456889999998743
No 5
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=80.23 E-value=1.1 Score=31.87 Aligned_cols=27 Identities=11% Similarity=0.178 Sum_probs=19.2
Q ss_pred CCCCCCCCCCCC--CCCCcccccccceee
Q 023696 145 ELGVDPDNENSL--SRKRVRYCKICKAHV 171 (278)
Q Consensus 145 ~~~~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (278)
.....|..|+.. --.|-|||+.||+-+
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIF 45 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEE
Confidence 344668888753 346889999998854
No 6
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=79.09 E-value=1.3 Score=30.81 Aligned_cols=24 Identities=13% Similarity=0.045 Sum_probs=17.5
Q ss_pred CCCCCCCCC--CCCCcccccccceee
Q 023696 148 VDPDNENSL--SRKRVRYCKICKAHV 171 (278)
Q Consensus 148 ~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (278)
..|..|+.. .-.|-|||+.||+-+
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEE
Confidence 458888753 346889999998754
No 7
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=77.69 E-value=1.8 Score=36.48 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=18.5
Q ss_pred CCCCCCCCCC--CCCCcccccccceee
Q 023696 147 GVDPDNENSL--SRKRVRYCKICKAHV 171 (278)
Q Consensus 147 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (278)
...|..|+.. --.|-|||+.||+-+
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVF 187 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEE
Confidence 4678888653 346889999998854
No 8
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=76.92 E-value=2.9 Score=29.21 Aligned_cols=40 Identities=13% Similarity=-0.061 Sum_probs=24.8
Q ss_pred CCCCCCCCCCCCCCCcccccccce--eecc---ccccccccccccc
Q 023696 146 LGVDPDNENSLSRKRVRYCKICKA--HVEG---FDHHCPAFGNCIG 186 (278)
Q Consensus 146 ~~~~C~~C~~~kP~Rs~HC~~C~~--CV~r---~DHHCpWl~nCIG 186 (278)
..+.|..|+...-.-...|+ |+. |-.. =||.|++--.=.|
T Consensus 24 ~~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~HRy~e~H~C~fDyk~~g 68 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTGFDCR-CGNLFCGLHRYSDKHNCPYDYKAEA 68 (74)
T ss_dssp CTTBCSSSCCBCGGGCEECT-TSCEECSSSCSTTTTTCCCCGGGTS
T ss_pred cCCcChhhCCcccccCeecC-CCCEechhcCCCccCCCcchhhhhc
Confidence 34679999876444347788 765 3222 3899987544333
No 9
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=75.41 E-value=1.5 Score=37.28 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=17.9
Q ss_pred CCCCCCCCCC--CCCCcccccccceee
Q 023696 147 GVDPDNENSL--SRKRVRYCKICKAHV 171 (278)
Q Consensus 147 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (278)
...|..|+.. --.|-|||+.||+.+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~ 190 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIF 190 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEe
Confidence 4578888742 345789999998854
No 10
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=75.26 E-value=1.3 Score=34.06 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=17.6
Q ss_pred CCCCCCCC--CCCCCccccccccee
Q 023696 148 VDPDNENS--LSRKRVRYCKICKAH 170 (278)
Q Consensus 148 ~~C~~C~~--~kP~Rs~HC~~C~~C 170 (278)
..|..|+. .-..|-|||+.||+-
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~i 44 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKN 44 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCE
T ss_pred CcccCcCCccccccccccCCCCCCe
Confidence 56888865 245689999999884
No 11
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=71.20 E-value=2.7 Score=30.28 Aligned_cols=25 Identities=16% Similarity=0.001 Sum_probs=18.3
Q ss_pred CCCCCCCCCC--CCCCcccccccceee
Q 023696 147 GVDPDNENSL--SRKRVRYCKICKAHV 171 (278)
Q Consensus 147 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (278)
...|..|+.. .-.|-|||+.||+-+
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vf 35 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAF 35 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEE
Confidence 3568888753 356889999998743
No 12
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=70.51 E-value=2 Score=33.16 Aligned_cols=25 Identities=12% Similarity=0.037 Sum_probs=18.3
Q ss_pred CCCCCCCCCC--CCCCcccccccceee
Q 023696 147 GVDPDNENSL--SRKRVRYCKICKAHV 171 (278)
Q Consensus 147 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (278)
...|..|+.. --.|-|||+.||+-+
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vf 95 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIF 95 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEE
Confidence 3568888753 356889999998754
No 13
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=68.65 E-value=2.7 Score=30.38 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=17.7
Q ss_pred CCCCCCCCCC--CCCCcccccccceee
Q 023696 147 GVDPDNENSL--SRKRVRYCKICKAHV 171 (278)
Q Consensus 147 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (278)
...|..|+.. --.|-|||+.||+-+
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~ 46 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVF 46 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEE
Confidence 3568888752 345789999998754
No 14
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=47.82 E-value=22 Score=24.00 Aligned_cols=40 Identities=13% Similarity=-0.032 Sum_probs=24.3
Q ss_pred CCCCCCCCCCCCCCCcccccccce--eec---cccccccccccccc
Q 023696 146 LGVDPDNENSLSRKRVRYCKICKA--HVE---GFDHHCPAFGNCIG 186 (278)
Q Consensus 146 ~~~~C~~C~~~kP~Rs~HC~~C~~--CV~---r~DHHCpWl~nCIG 186 (278)
..+.|..|+...-.-.-.|+ |+. |-. --||.|++--.=.|
T Consensus 14 ~~~rC~~C~kkvgl~~f~Cr-Cg~~FC~~HRy~e~H~C~fDyk~~g 58 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLTGFMCR-CGTTFCGSHRYPEVHGCTFDFKSAG 58 (64)
T ss_dssp SCCCCTTTCCCCCTTCEECS-SSCEECTTTCSTTTTTCCCCCSCCC
T ss_pred cCCcChhhCCccCccCEEee-cCCEeccccCCcccCCCCchhhHHH
Confidence 34679999876444356774 654 322 23898987544443
No 15
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=47.78 E-value=6.5 Score=31.02 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=26.8
Q ss_pred CCCCCCCCCCCCCCC-Ccccccccceeecc---ccccccccccccc
Q 023696 145 ELGVDPDNENSLSRK-RVRYCKICKAHVEG---FDHHCPAFGNCIG 186 (278)
Q Consensus 145 ~~~~~C~~C~~~kP~-Rs~HC~~C~~CV~r---~DHHCpWl~nCIG 186 (278)
...-||..|+.+.++ ...||..||-|-.+ -=-||.=-|.|+.
T Consensus 81 f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s 126 (143)
T 2dkt_A 81 FGEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLT 126 (143)
T ss_dssp SCSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEE
T ss_pred ceeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeeec
Confidence 345578888887554 35778888887665 2235666666653
No 16
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=43.76 E-value=17 Score=25.99 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=21.0
Q ss_pred CCCCCCCCCCCCCCCccccccccee
Q 023696 146 LGVDPDNENSLSRKRVRYCKICKAH 170 (278)
Q Consensus 146 ~~~~C~~C~~~kP~Rs~HC~~C~~C 170 (278)
....|+.|+.+...--.-||+|+|+
T Consensus 14 ~D~~C~VC~~~t~~~l~pCRvC~Rv 38 (89)
T 1wil_A 14 NDEMCDVCEVWTAESLFPCRVCTRV 38 (89)
T ss_dssp CSCCCTTTCCCCSSCCSSCSSSSSC
T ss_pred CCcccCccccccccceecccccccc
Confidence 4578999999987777889999995
No 17
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=42.05 E-value=6.9 Score=30.87 Aligned_cols=31 Identities=13% Similarity=0.159 Sum_probs=21.6
Q ss_pred CCCCCCCCCCCCcccccccceeecc--cc-cccc
Q 023696 149 DPDNENSLSRKRVRYCKICKAHVEG--FD-HHCP 179 (278)
Q Consensus 149 ~C~~C~~~kP~Rs~HC~~C~~CV~r--~D-HHCp 179 (278)
.|..|+.-+...-.||..||.|+.. .| |.|.
T Consensus 103 ~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~ 136 (143)
T 2dkt_A 103 SCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCI 136 (143)
T ss_dssp TTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCS
T ss_pred CCCceeccCCcCcEECCcCCeeeccccCcCcccC
Confidence 4555555666778999999999653 44 7664
No 18
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=40.15 E-value=11 Score=24.29 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=14.6
Q ss_pred CCCCCCCCCCCCcccccccce
Q 023696 149 DPDNENSLSRKRVRYCKICKA 169 (278)
Q Consensus 149 ~C~~C~~~kP~Rs~HC~~C~~ 169 (278)
.|..|+..-||--+||..|-.
T Consensus 13 kC~~C~k~N~Pl~ryC~rCwa 33 (53)
T 2cr8_A 13 QCTECKKFNSPSKRYCFRCWA 33 (53)
T ss_dssp ECSSSCCEECSSCCBCTTTCC
T ss_pred ecccccccCCCccchhHHHHH
Confidence 477777777777777766643
No 19
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=39.15 E-value=28 Score=24.89 Aligned_cols=40 Identities=13% Similarity=0.027 Sum_probs=25.8
Q ss_pred CCCCCCCCCCCCCC-Ccccccccce--eecc---ccccccccccccc
Q 023696 146 LGVDPDNENSLSRK-RVRYCKICKA--HVEG---FDHHCPAFGNCIG 186 (278)
Q Consensus 146 ~~~~C~~C~~~kP~-Rs~HC~~C~~--CV~r---~DHHCpWl~nCIG 186 (278)
..+.|..|+..-.. ...+|+ |+. |-.. -||.|++--.=.|
T Consensus 24 ~~~rC~~C~kkvgl~~~f~Cr-Cg~~FC~~HRy~e~H~C~fDyK~~g 69 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFECR-CGNNFCASHRYAEAHGCNYDYKSAG 69 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEECT-TCCEECTTTCSTGGGTCCSCCSSSC
T ss_pred cCccchhhCCeecccCCeEcC-CCCEecccCCCccCCCCcchhhHHH
Confidence 34679999876655 367786 764 4443 4999987544333
No 20
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=38.72 E-value=15 Score=26.06 Aligned_cols=12 Identities=17% Similarity=0.575 Sum_probs=5.4
Q ss_pred cccccccceeec
Q 023696 161 VRYCKICKAHVE 172 (278)
Q Consensus 161 s~HC~~C~~CV~ 172 (278)
.+||..|++-+.
T Consensus 18 ~~~C~~C~~~~~ 29 (81)
T 2jrp_A 18 TAHCETCAKDFS 29 (81)
T ss_dssp EEECTTTCCEEE
T ss_pred ceECccccccCC
Confidence 344555544433
No 21
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=38.41 E-value=12 Score=27.58 Aligned_cols=31 Identities=16% Similarity=0.369 Sum_probs=20.6
Q ss_pred CCCCCCCCCC--CCCcccccccceeecccccccc
Q 023696 148 VDPDNENSLS--RKRVRYCKICKAHVEGFDHHCP 179 (278)
Q Consensus 148 ~~C~~C~~~k--P~Rs~HC~~C~~CV~r~DHHCp 179 (278)
..|+.|+..- -.+..||..|++-+.+ --+||
T Consensus 33 ~~CP~Cq~eL~~~g~~~hC~~C~~~f~~-~a~CP 65 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHARCRSCGEFIEM-KALCP 65 (101)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCEEEE-EEECT
T ss_pred ccCccCCCcceecCCEEECccccchhhc-cccCc
Confidence 7899998652 3456789999885443 33454
No 22
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=38.34 E-value=28 Score=23.45 Aligned_cols=39 Identities=15% Similarity=-0.000 Sum_probs=23.2
Q ss_pred CCCCCCCCCCCCCCcccccccce--e---eccccccccccccccc
Q 023696 147 GVDPDNENSLSRKRVRYCKICKA--H---VEGFDHHCPAFGNCIG 186 (278)
Q Consensus 147 ~~~C~~C~~~kP~Rs~HC~~C~~--C---V~r~DHHCpWl~nCIG 186 (278)
.+.|..|+..--.-.-.| .|+. | -.--||.|++--.=.|
T Consensus 15 ~~rC~~C~kkvgl~~f~C-rCg~~FC~~HR~~e~H~C~fDyk~~g 58 (64)
T 1wg2_A 15 NNRCFSCNKKVGVMGFKC-KCGSTFCGSHRYPEKHECSFDFKEVG 58 (64)
T ss_dssp SCSCTTTCCCCTTSCEEC-TTSCEECSSSCSSTTTTCCCCCSCSC
T ss_pred CCcChhhCCcccccCeEe-ecCCEecccCCCccccCCCcchhHHh
Confidence 467999987543334667 3554 3 3334899987554444
No 23
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=38.01 E-value=50 Score=22.90 Aligned_cols=41 Identities=12% Similarity=0.008 Sum_probs=25.0
Q ss_pred CCCCCCCCCCCCCCCcccccccce--ee---cccccccccccccccc
Q 023696 146 LGVDPDNENSLSRKRVRYCKICKA--HV---EGFDHHCPAFGNCIGQ 187 (278)
Q Consensus 146 ~~~~C~~C~~~kP~Rs~HC~~C~~--CV---~r~DHHCpWl~nCIG~ 187 (278)
..+.|..|+...-.-...|+ |+. |- ..-||.|++--+=.|+
T Consensus 24 ~~~RC~~C~kkvgL~~f~Cr-Cg~~FCs~HRy~e~H~C~fDyk~~gr 69 (74)
T 1wfp_A 24 TATRCLSCNKKVGVTGFKCR-CGSTFCGTHRYPESHECQFDFKGVAS 69 (74)
T ss_dssp CCCBCSSSCCBCTTTCEECT-TSCEECTTTCSTTTSCCCSCTTSCCC
T ss_pred cCccchhhcCcccccceEec-cCCEeccccCCCcCCCCcCchhHHhH
Confidence 34678888865444456773 654 33 3338999876554443
No 24
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=36.32 E-value=13 Score=23.39 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=16.4
Q ss_pred CCCCCCCCCCCCCcccccccce
Q 023696 148 VDPDNENSLSRKRVRYCKICKA 169 (278)
Q Consensus 148 ~~C~~C~~~kP~Rs~HC~~C~~ 169 (278)
-.|..|+..-||--+||..|-.
T Consensus 14 WkC~~C~~~N~Pl~r~C~rCw~ 35 (46)
T 2c6a_A 14 WKCTSCNEMNPPLPSHCNRCWA 35 (46)
T ss_dssp EECTTTCCEECSSCSSCTTTCC
T ss_pred EecccccccCCCccchhhHHHh
Confidence 3588888888888888777644
No 25
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=34.62 E-value=8.3 Score=35.35 Aligned_cols=24 Identities=17% Similarity=0.034 Sum_probs=0.0
Q ss_pred CCCCCCCCCC--CCCCccccccccee
Q 023696 147 GVDPDNENSL--SRKRVRYCKICKAH 170 (278)
Q Consensus 147 ~~~C~~C~~~--kP~Rs~HC~~C~~C 170 (278)
...|..|+.. --.|-|||+.||+.
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~ 400 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKI 400 (434)
T ss_dssp --------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCE
Confidence 4568888652 23477999999874
No 26
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=34.23 E-value=9.7 Score=28.95 Aligned_cols=25 Identities=12% Similarity=0.054 Sum_probs=21.6
Q ss_pred CCCCCCCCCCCCCCCccccc--cccee
Q 023696 146 LGVDPDNENSLSRKRVRYCK--ICKAH 170 (278)
Q Consensus 146 ~~~~C~~C~~~kP~Rs~HC~--~C~~C 170 (278)
...+|..|..+-|+|++.|+ .||..
T Consensus 92 ~~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 92 DKSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp SCEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred ceEeeccccccCCchhhccchhhCCCc
Confidence 45789999999999999999 58764
No 27
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=33.84 E-value=21 Score=32.33 Aligned_cols=29 Identities=17% Similarity=0.079 Sum_probs=21.1
Q ss_pred CCCCCCCCCCCCC---CCCcccccccceeecc
Q 023696 145 ELGVDPDNENSLS---RKRVRYCKICKAHVEG 173 (278)
Q Consensus 145 ~~~~~C~~C~~~k---P~Rs~HC~~C~~CV~r 173 (278)
....+|..|+..- -.|-|||+.|+..|-+
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~ 386 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQGYRCYRCRAPAHK 386 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEETTTCCEECG
T ss_pred CCCCCCccccchhceeCCCCCCCCCCcCccch
Confidence 3568999998643 4688999998765544
No 28
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=31.42 E-value=13 Score=25.82 Aligned_cols=28 Identities=25% Similarity=0.240 Sum_probs=20.4
Q ss_pred CCCCCCCCCCCCCCCCc----ccccccceeec
Q 023696 145 ELGVDPDNENSLSRKRV----RYCKICKAHVE 172 (278)
Q Consensus 145 ~~~~~C~~C~~~kP~Rs----~HC~~C~~CV~ 172 (278)
.....|+.|...+-.|. .||+.|++=+.
T Consensus 24 ~~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~A 55 (72)
T 3jyw_9 24 HARYDCSFCGKKTVKRGAAGIWTCSCCKKTVA 55 (72)
T ss_dssp HSCBCCSSCCSSCBSBCSSSCBCCSSSCCCCC
T ss_pred ccCccCCCCCCceeEecCCCeEECCCCCCEEe
Confidence 34567999987776664 58999987554
No 29
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=30.80 E-value=21 Score=24.79 Aligned_cols=32 Identities=16% Similarity=0.102 Sum_probs=23.3
Q ss_pred cCCCCCCCCCCCCCCCCCCc----ccccccceeecc
Q 023696 142 EGSELGVDPDNENSLSRKRV----RYCKICKAHVEG 173 (278)
Q Consensus 142 ~~~~~~~~C~~C~~~kP~Rs----~HC~~C~~CV~r 173 (278)
..+.....|+.|...+-.|. .+|+.|++-+..
T Consensus 22 ~~q~~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AG 57 (73)
T 1ffk_W 22 IKHKKKYKCPVCGFPKLKRASTSIWVCGHCGYKIAG 57 (73)
T ss_pred HhcccCccCCCCCCceeEEEEeEEEECCCCCcEEEC
Confidence 34455678999988766664 789999987654
No 30
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=25.58 E-value=31 Score=23.65 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=17.6
Q ss_pred CCCCCCCCC---CCCCcccccccceeec
Q 023696 148 VDPDNENSL---SRKRVRYCKICKAHVE 172 (278)
Q Consensus 148 ~~C~~C~~~---kP~Rs~HC~~C~~CV~ 172 (278)
-.|..|... ++..+-||+.||.-|+
T Consensus 29 Y~C~~CG~~~e~~~~d~irCp~CG~RIL 56 (70)
T 1twf_L 29 YICAECSSKLSLSRTDAVRCKDCGHRIL 56 (70)
T ss_dssp EECSSSCCEECCCTTSTTCCSSSCCCCC
T ss_pred EECCCCCCcceeCCCCCccCCCCCceEe
Confidence 468888654 4556778999987554
No 31
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=24.75 E-value=16 Score=30.26 Aligned_cols=19 Identities=16% Similarity=0.137 Sum_probs=14.5
Q ss_pred CCCCcccccccceeecccc
Q 023696 157 SRKRVRYCKICKAHVEGFD 175 (278)
Q Consensus 157 kP~Rs~HC~~C~~CV~r~D 175 (278)
++.|.+||..|+.|..|..
T Consensus 191 ~~~~~~~CG~C~~C~~r~~ 209 (232)
T 2pg3_A 191 NGIKGDGCGQCAACHLRAN 209 (232)
T ss_dssp TSCCTTTTSCSHHHHHHHH
T ss_pred CCCCCCcCCcCHhHHHHHH
Confidence 4555689999999988743
No 32
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=22.07 E-value=35 Score=19.77 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=13.6
Q ss_pred CCCCCCCCCCCCcccccccc
Q 023696 149 DPDNENSLSRKRVRYCKICK 168 (278)
Q Consensus 149 ~C~~C~~~kP~Rs~HC~~C~ 168 (278)
.|+.|...-++.+.+|..|+
T Consensus 9 ~C~~C~~~N~~~~~kC~aC~ 28 (33)
T 3gj3_B 9 DCDTCLVQNKPEAVKCVACE 28 (33)
T ss_dssp ECTTTCCEECTTCSBCTTTC
T ss_pred eCCcccCCCccccCEEcccC
Confidence 37777777666677777665
No 33
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=21.71 E-value=23 Score=25.68 Aligned_cols=29 Identities=28% Similarity=0.307 Sum_probs=22.0
Q ss_pred CCCCCCCCCCCCCCCCc----ccccccceeecc
Q 023696 145 ELGVDPDNENSLSRKRV----RYCKICKAHVEG 173 (278)
Q Consensus 145 ~~~~~C~~C~~~kP~Rs----~HC~~C~~CV~r 173 (278)
.....|+.|...+-.|. .||+.|+.=+..
T Consensus 34 ~~ky~CpfCgk~~vkR~a~GIW~C~~C~~~~AG 66 (92)
T 3izc_m 34 HARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAG 66 (92)
T ss_dssp HSCCCCSSSCSSCCEEEETTEEECTTTCCEEEC
T ss_pred hcCCcCCCCCCceeeecccceEEcCCCCCEEeC
Confidence 35577999988777774 599999886654
No 34
>1h7d_A Aminolevulinic acid synthase 2, erythroid; acyltransferase, ALAS, presequence, structure; NMR {Mus musculus} SCOP: j.88.1.1 PDB: 1h7j_A
Probab=21.70 E-value=28 Score=22.20 Aligned_cols=13 Identities=15% Similarity=0.324 Sum_probs=10.6
Q ss_pred ccccccccccccc
Q 023696 173 GFDHHCPAFGNCI 185 (278)
Q Consensus 173 r~DHHCpWl~nCI 185 (278)
.++|+||+++.+=
T Consensus 6 ~~l~~CPFL~R~p 18 (49)
T 1h7d_A 6 MLLRSCPVLSQGP 18 (49)
T ss_dssp CSCCSCCCCSSCS
T ss_pred hhhccCCchhcCC
Confidence 4789999998764
No 35
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=21.46 E-value=20 Score=29.14 Aligned_cols=18 Identities=17% Similarity=0.045 Sum_probs=13.9
Q ss_pred CCCCcccccccceeeccc
Q 023696 157 SRKRVRYCKICKAHVEGF 174 (278)
Q Consensus 157 kP~Rs~HC~~C~~CV~r~ 174 (278)
.+.|.+||..|..|+.|.
T Consensus 188 ~~~~~~~CG~C~~C~~r~ 205 (219)
T 3bl5_A 188 NGIIADGCGECPACHLRS 205 (219)
T ss_dssp TSCCSSCCSCSHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHH
Confidence 344568999999998774
Done!