Query 023697
Match_columns 278
No_of_seqs 144 out of 165
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 11:16:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023697.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023697hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3na7_A HP0958; flagellar bioge 97.7 0.0038 1.3E-07 55.9 19.4 57 101-157 66-128 (256)
2 2dfs_A Myosin-5A; myosin-V, in 97.6 0.0016 5.3E-08 69.6 17.7 123 65-187 923-1046(1080)
3 1i84_S Smooth muscle myosin he 97.5 0.0004 1.4E-08 74.5 11.3 10 47-56 862-871 (1184)
4 1gxl_A SMC, chromosome segrega 97.5 2.7E-05 9.3E-10 66.7 1.8 53 2-56 140-204 (213)
5 2wd5_B Structural maintenance 97.4 2.2E-05 7.6E-10 67.8 0.5 42 2-43 142-193 (213)
6 3na7_A HP0958; flagellar bioge 97.3 0.052 1.8E-06 48.5 21.0 43 58-100 13-55 (256)
7 3ol1_A Vimentin; structural ge 97.1 0.014 4.9E-07 46.7 13.5 99 44-170 15-114 (119)
8 2dfs_A Myosin-5A; myosin-V, in 97.0 0.017 5.9E-07 61.6 16.7 85 107-191 958-1043(1080)
9 3o0z_A RHO-associated protein 96.9 0.17 5.8E-06 43.0 19.3 42 124-165 74-115 (168)
10 2v71_A Nuclear distribution pr 96.8 0.11 3.8E-06 44.9 17.4 35 125-159 101-135 (189)
11 3vkg_A Dynein heavy chain, cyt 96.5 0.44 1.5E-05 56.1 24.2 58 170-227 2013-2070(3245)
12 3ghg_A Fibrinogen alpha chain; 96.4 0.03 1E-06 55.1 12.2 78 94-188 77-155 (562)
13 3oja_B Anopheles plasmodium-re 96.4 0.032 1.1E-06 54.5 12.7 23 171-193 537-559 (597)
14 3vkg_A Dynein heavy chain, cyt 96.3 0.75 2.6E-05 54.2 24.7 55 164-218 2028-2082(3245)
15 3oja_B Anopheles plasmodium-re 96.1 0.076 2.6E-06 51.8 13.9 61 167-227 519-579 (597)
16 3ol1_A Vimentin; structural ge 96.1 0.23 7.9E-06 39.6 14.0 70 113-188 38-107 (119)
17 3swk_A Vimentin; cytoskeleton, 95.9 0.15 5E-06 38.6 11.6 79 74-159 4-82 (86)
18 2wd5_A Structural maintenance 95.7 0.0012 4.1E-08 58.1 -1.2 34 2-35 151-196 (233)
19 2v71_A Nuclear distribution pr 95.6 0.95 3.2E-05 39.0 18.6 13 77-89 24-36 (189)
20 2ocy_A RAB guanine nucleotide 95.6 0.52 1.8E-05 39.4 14.6 81 70-161 13-93 (154)
21 3mq7_A Bone marrow stromal ant 95.5 0.26 9E-06 39.3 12.0 72 123-194 29-101 (121)
22 3swk_A Vimentin; cytoskeleton, 95.4 0.085 2.9E-06 39.9 8.5 81 86-183 2-82 (86)
23 3hnw_A Uncharacterized protein 95.1 0.64 2.2E-05 38.0 13.7 56 16-82 10-67 (138)
24 2w83_C C-JUN-amino-terminal ki 95.1 0.17 5.9E-06 37.5 8.9 68 56-158 9-76 (77)
25 2fxo_A Myosin heavy chain, car 95.0 1.1 3.7E-05 36.0 16.2 97 121-217 15-122 (129)
26 2no2_A HIP-I, huntingtin-inter 95.0 0.72 2.5E-05 36.2 13.0 84 118-201 7-91 (107)
27 3mq9_A Bone marrow stromal ant 94.8 0.4 1.4E-05 45.6 13.3 70 122-191 400-470 (471)
28 3mq9_A Bone marrow stromal ant 94.7 0.96 3.3E-05 42.9 15.8 26 70-95 397-422 (471)
29 2v4h_A NF-kappa-B essential mo 94.4 0.91 3.1E-05 35.8 12.1 47 116-162 59-105 (110)
30 3ghg_A Fibrinogen alpha chain; 94.1 0.52 1.8E-05 46.4 12.3 93 123-222 61-154 (562)
31 2v4h_A NF-kappa-B essential mo 94.0 0.42 1.4E-05 37.8 9.5 84 121-218 26-109 (110)
32 1deq_A Fibrinogen (alpha chain 94.0 1.2 3.9E-05 42.3 14.1 28 163-190 133-160 (390)
33 3tnu_B Keratin, type II cytosk 93.8 1.1 3.9E-05 35.8 12.1 77 123-199 33-110 (129)
34 2eqb_B RAB guanine nucleotide 93.7 0.93 3.2E-05 35.1 10.8 33 126-158 5-37 (97)
35 2fxo_A Myosin heavy chain, car 93.3 2.5 8.7E-05 33.8 18.1 32 127-158 91-122 (129)
36 1wt6_A Myotonin-protein kinase 93.2 0.6 2E-05 35.0 8.6 48 113-160 18-72 (81)
37 3tnu_A Keratin, type I cytoske 93.0 1 3.5E-05 36.2 10.7 77 123-199 35-112 (131)
38 3tnu_A Keratin, type I cytoske 92.8 3.1 0.00011 33.3 13.5 16 143-158 87-102 (131)
39 3mq7_A Bone marrow stromal ant 92.8 3.1 0.00011 33.2 13.8 27 70-96 25-51 (121)
40 3tnu_B Keratin, type II cytosk 92.7 3.1 0.00011 33.2 14.2 14 145-158 87-100 (129)
41 3hhm_B NISH2 P85alpha; PI3KCA, 92.7 3.7 0.00013 38.7 15.5 129 46-185 123-254 (373)
42 3jsv_C NF-kappa-B essential mo 92.6 1.7 5.7E-05 33.5 10.6 84 74-168 6-89 (94)
43 2jee_A YIIU; FTSZ, septum, coi 92.4 1.3 4.4E-05 33.2 9.4 58 101-161 12-69 (81)
44 1x79_B RAB GTPase binding effe 92.3 1.6 5.6E-05 34.5 10.5 94 121-224 8-102 (112)
45 3iox_A AGI/II, PA; alpha helix 92.3 4.3 0.00015 39.7 15.5 101 73-182 5-105 (497)
46 3i00_A HIP-I, huntingtin-inter 92.2 0.57 1.9E-05 37.6 7.9 51 97-160 10-60 (120)
47 2xnx_M M protein, M1-BC1; cell 92.2 1 3.5E-05 37.2 9.5 62 122-186 69-130 (146)
48 1l8d_A DNA double-strand break 91.8 0.74 2.5E-05 35.5 8.0 43 120-162 4-46 (112)
49 3i00_A HIP-I, huntingtin-inter 91.2 2.6 8.8E-05 33.7 10.7 38 121-158 42-79 (120)
50 3jsv_C NF-kappa-B essential mo 91.1 0.98 3.3E-05 34.8 7.7 51 171-221 40-90 (94)
51 1go4_E MAD1 (mitotic arrest de 90.8 1.2 4.2E-05 34.6 8.2 61 127-187 13-91 (100)
52 1m1j_B Fibrinogen beta chain; 90.7 8.3 0.00028 37.5 15.8 67 121-187 123-191 (464)
53 4gkw_A Spindle assembly abnorm 90.6 6.1 0.00021 32.3 19.7 100 72-185 62-161 (167)
54 4gkw_A Spindle assembly abnorm 90.6 6.1 0.00021 32.3 19.3 97 118-228 52-155 (167)
55 3a7p_A Autophagy protein 16; c 90.3 3.4 0.00012 34.4 11.0 80 134-222 69-148 (152)
56 2jee_A YIIU; FTSZ, septum, coi 90.2 2.5 8.6E-05 31.6 9.1 66 167-232 9-74 (81)
57 2efk_A CDC42-interacting prote 90.0 9.5 0.00032 33.5 20.0 19 195-213 208-226 (301)
58 3o0z_A RHO-associated protein 89.7 8.5 0.00029 32.5 19.6 55 46-100 10-64 (168)
59 1ez3_A Syntaxin-1A; three heli 89.5 6.1 0.00021 30.6 11.6 65 118-182 11-79 (127)
60 3lay_A Zinc resistance-associa 89.5 2 6.9E-05 36.4 9.3 27 161-187 110-136 (175)
61 3hnw_A Uncharacterized protein 89.3 5.8 0.0002 32.2 11.6 12 2-13 13-24 (138)
62 1ic2_A Tropomyosin alpha chain 89.0 3.5 0.00012 30.3 9.2 29 164-192 48-76 (81)
63 3s4r_A Vimentin; alpha-helix, 88.8 3.7 0.00013 31.2 9.5 34 125-158 55-88 (93)
64 2w6b_A RHO guanine nucleotide 88.7 0.9 3.1E-05 31.5 5.2 39 166-204 12-50 (56)
65 3okq_A BUD site selection prot 88.7 2.2 7.4E-05 35.1 8.5 67 130-196 18-86 (141)
66 3q8t_A Beclin-1; autophagy, AT 88.4 6.9 0.00024 29.8 13.1 27 165-191 68-94 (96)
67 2lw1_A ABC transporter ATP-bin 88.2 2.3 7.9E-05 31.8 7.9 54 135-188 24-80 (89)
68 2ocy_A RAB guanine nucleotide 88.2 7.7 0.00026 32.3 11.7 13 214-226 116-128 (154)
69 1m1j_C Fibrinogen gamma chain; 88.2 9.7 0.00033 36.4 14.1 44 46-89 24-67 (409)
70 3bas_A Myosin heavy chain, str 88.1 5.3 0.00018 29.9 9.9 48 112-162 10-57 (89)
71 2pih_A Protein YMCA; regulate 88.0 4.5 0.00015 33.2 10.2 104 105-222 7-112 (151)
72 1deq_A Fibrinogen (alpha chain 87.7 8.6 0.00029 36.4 13.0 41 182-222 117-157 (390)
73 3s4r_A Vimentin; alpha-helix, 87.7 4.6 0.00016 30.7 9.3 51 107-162 21-71 (93)
74 3oja_A Leucine-rich immune mol 87.6 16 0.00055 34.5 15.4 30 172-201 450-479 (487)
75 1wt6_A Myotonin-protein kinase 87.4 4.3 0.00015 30.3 8.6 20 164-183 52-71 (81)
76 1m1j_A Fibrinogen alpha subuni 87.3 21 0.00071 34.7 15.6 26 163-188 131-156 (491)
77 1gk4_A Vimentin; intermediate 87.2 7.3 0.00025 28.8 12.1 23 124-146 38-60 (84)
78 3u1c_A Tropomyosin alpha-1 cha 87.0 8.7 0.0003 29.4 13.3 24 167-190 54-77 (101)
79 3haj_A Human pacsin2 F-BAR; pa 86.6 23 0.00079 33.9 19.6 48 165-213 186-245 (486)
80 4ad8_A DNA repair protein RECN 85.9 24 0.00081 33.8 15.7 17 166-182 287-303 (517)
81 1t3j_A Mitofusin 1; coiled coi 85.8 2.6 9E-05 32.5 7.0 44 142-185 49-92 (96)
82 3l4q_C Phosphatidylinositol 3- 85.8 15 0.00052 31.0 15.3 50 45-94 13-62 (170)
83 3q8t_A Beclin-1; autophagy, AT 85.3 11 0.00036 28.8 11.5 24 196-219 71-94 (96)
84 1x79_B RAB GTPase binding effe 85.2 12 0.00042 29.5 12.7 22 164-185 77-98 (112)
85 2efr_A General control protein 85.0 15 0.00053 30.4 22.1 73 136-211 66-138 (155)
86 2eqb_B RAB guanine nucleotide 84.9 12 0.0004 28.9 11.1 37 124-160 24-60 (97)
87 2pms_C Pneumococcal surface pr 84.6 7.6 0.00026 31.3 9.5 70 154-224 51-121 (125)
88 1x8y_A Lamin A/C; structural p 84.2 7.5 0.00026 28.9 8.9 8 128-135 44-51 (86)
89 1m1j_C Fibrinogen gamma chain; 83.8 13 0.00044 35.5 12.4 98 115-228 37-134 (409)
90 3nmd_A CGMP dependent protein 83.1 6.4 0.00022 28.8 7.7 32 128-159 35-66 (72)
91 1joc_A EEA1, early endosomal a 81.6 8.8 0.0003 30.4 8.9 44 103-149 5-48 (125)
92 3a7p_A Autophagy protein 16; c 81.6 21 0.00073 29.5 11.7 30 119-148 96-125 (152)
93 1jcd_A Major outer membrane li 81.4 7.9 0.00027 26.5 7.2 43 135-187 6-48 (52)
94 2w6a_A ARF GTPase-activating p 81.3 9 0.00031 27.0 7.5 47 120-166 14-60 (63)
95 2e7s_A RAB guanine nucleotide 81.1 2.5 8.6E-05 34.5 5.4 9 71-79 33-41 (135)
96 3m91_A Proteasome-associated A 80.9 7.6 0.00026 26.4 7.0 42 48-89 8-49 (51)
97 3u59_A Tropomyosin beta chain; 80.7 17 0.00057 27.7 13.3 24 167-190 54-77 (101)
98 4fla_A Regulation of nuclear P 80.4 19 0.00066 29.6 10.8 58 121-178 88-145 (152)
99 3nmd_A CGMP dependent protein 80.1 9.7 0.00033 27.8 7.8 20 168-187 51-70 (72)
100 1wle_A Seryl-tRNA synthetase; 80.0 16 0.00056 35.6 11.9 32 122-153 73-104 (501)
101 3t98_B Nucleoporin NUP58/NUP45 79.6 14 0.00047 28.1 8.9 67 121-187 14-88 (93)
102 3htk_A Structural maintenance 79.4 8.9 0.0003 26.1 7.2 24 166-189 35-58 (60)
103 1s94_A S-syntaxin; three helix 79.0 8 0.00027 32.1 8.2 18 201-218 128-145 (180)
104 3u1c_A Tropomyosin alpha-1 cha 78.8 20 0.00067 27.4 14.9 58 125-182 36-97 (101)
105 3qne_A Seryl-tRNA synthetase, 78.6 5.6 0.00019 38.8 8.0 55 119-180 33-87 (485)
106 2b9c_A Striated-muscle alpha t 78.3 21 0.00071 29.3 10.3 70 119-188 52-125 (147)
107 2dq0_A Seryl-tRNA synthetase; 77.9 9.9 0.00034 36.6 9.5 54 121-181 33-86 (455)
108 2e7s_A RAB guanine nucleotide 77.6 2.3 7.8E-05 34.8 4.1 11 210-220 71-81 (135)
109 2qyw_A Vesicle transport throu 76.9 15 0.00053 28.0 8.6 24 70-93 15-38 (102)
110 2dq0_A Seryl-tRNA synthetase; 76.5 5.2 0.00018 38.6 7.1 8 199-206 161-168 (455)
111 1go4_E MAD1 (mitotic arrest de 76.5 4.9 0.00017 31.2 5.6 65 120-184 13-95 (100)
112 1ykh_B RNA polymerase II holoe 76.2 18 0.00062 29.0 9.2 72 67-152 54-125 (132)
113 4e61_A Protein BIM1; EB1-like 76.0 21 0.00072 27.9 9.1 40 118-157 3-42 (106)
114 3s9g_A Protein hexim1; cyclin 75.7 10 0.00035 29.3 7.1 24 163-186 64-87 (104)
115 3qne_A Seryl-tRNA synthetase, 75.6 12 0.00042 36.5 9.4 28 195-222 74-101 (485)
116 2iub_A CORA, divalent cation t 75.4 27 0.00094 32.0 11.5 13 241-253 320-333 (363)
117 2d1l_A Metastasis suppressor p 75.3 44 0.0015 29.7 15.7 43 180-222 188-230 (253)
118 2zqm_A Prefoldin beta subunit 75.3 24 0.00084 26.7 10.5 16 211-226 89-104 (117)
119 1m1j_B Fibrinogen beta chain; 75.1 63 0.0021 31.3 15.5 25 163-187 134-158 (464)
120 2ke4_A CDC42-interacting prote 74.9 13 0.00046 28.4 7.7 23 123-145 19-41 (98)
121 3lay_A Zinc resistance-associa 74.8 21 0.00073 30.1 9.7 20 170-189 112-131 (175)
122 3ni0_A Bone marrow stromal ant 74.6 27 0.00091 26.8 11.2 24 163-186 66-89 (99)
123 1ik9_A DNA repair protein XRCC 74.2 43 0.0015 29.0 12.1 68 104-177 123-195 (213)
124 1jcd_A Major outer membrane li 74.1 9.8 0.00034 26.0 6.0 34 127-160 5-38 (52)
125 1yke_B RNA polymerase II holoe 73.2 25 0.00087 28.9 9.5 78 67-158 54-131 (151)
126 3pwx_A Putative flagellar HOOK 72.8 38 0.0013 29.4 11.3 78 109-186 11-91 (239)
127 2yy0_A C-MYC-binding protein; 72.7 6.9 0.00024 26.7 5.0 29 121-149 21-49 (53)
128 1vcs_A Vesicle transport throu 72.7 13 0.00045 28.4 7.2 23 163-185 73-95 (102)
129 1fxk_C Protein (prefoldin); ar 71.7 26 0.00088 27.4 9.0 30 199-228 95-124 (133)
130 4dyl_A Tyrosine-protein kinase 71.7 65 0.0022 30.0 17.3 23 196-218 208-230 (406)
131 3plt_A Sphingolipid long chain 71.6 53 0.0018 29.0 20.3 62 127-192 98-159 (234)
132 2iaz_A Hypothetical protein SP 71.6 13 0.00044 28.4 7.0 83 105-189 3-86 (113)
133 4ev6_A Magnesium transport pro 71.6 41 0.0014 30.4 11.6 13 241-253 296-309 (339)
134 1fxk_A Prefoldin; archaeal pro 71.4 29 0.001 25.8 10.3 29 122-150 68-96 (107)
135 2bsg_A Fibritin; viral protein 71.1 26 0.0009 34.1 10.4 102 121-222 96-221 (487)
136 2dq3_A Seryl-tRNA synthetase; 71.0 4 0.00014 38.9 4.7 70 118-187 29-98 (425)
137 3ghg_C Fibrinogen gamma chain; 70.7 53 0.0018 31.3 12.4 23 46-68 24-46 (411)
138 2oeq_A Protein of unknown func 70.6 18 0.0006 28.3 7.7 99 106-218 7-106 (122)
139 2oto_A M protein; helical coil 70.1 42 0.0014 27.2 17.5 38 136-173 117-154 (155)
140 2w6a_A ARF GTPase-activating p 70.0 26 0.00088 24.7 8.7 46 44-89 15-60 (63)
141 4dci_A Uncharacterized protein 69.6 26 0.00088 29.0 8.7 72 131-203 34-105 (150)
142 3c9i_A Tail needle protein GP2 69.3 58 0.002 28.4 14.1 89 65-165 63-152 (242)
143 1ses_A Seryl-tRNA synthetase; 69.1 14 0.00048 35.1 8.0 30 121-150 30-59 (421)
144 3ra3_A P1C; coiled coil domain 69.1 2.6 9E-05 24.6 1.8 21 158-178 6-28 (28)
145 2v0o_A FCHO2, FCH domain only 68.7 55 0.0019 28.0 16.8 31 59-89 31-61 (276)
146 2zqm_A Prefoldin beta subunit 68.6 36 0.0012 25.7 13.6 38 121-158 72-109 (117)
147 2efl_A Formin-binding protein 68.3 59 0.002 28.2 21.8 22 194-215 214-235 (305)
148 3u59_A Tropomyosin beta chain; 68.2 36 0.0012 25.7 14.9 15 167-181 82-96 (101)
149 1wle_A Seryl-tRNA synthetase; 67.9 26 0.0009 34.2 9.9 8 198-205 186-193 (501)
150 3lss_A Seryl-tRNA synthetase; 67.7 26 0.00089 34.1 9.8 35 120-154 38-72 (484)
151 3a7o_A Autophagy protein 16; c 67.6 33 0.0011 24.9 8.4 32 63-94 11-42 (75)
152 1gu4_A CAAT/enhancer binding p 67.4 31 0.0011 25.3 7.9 48 119-166 29-76 (78)
153 1ci6_A Transcription factor AT 67.3 29 0.00098 24.2 7.8 33 124-156 21-53 (63)
154 3cl3_D NF-kappa-B essential mo 66.9 4.9 0.00017 32.5 3.6 64 131-194 21-85 (130)
155 4dzn_A Coiled-coil peptide CC- 66.6 7.4 0.00025 23.5 3.5 19 166-184 4-22 (33)
156 1cii_A Colicin IA; bacteriocin 66.5 1E+02 0.0034 30.2 13.9 72 117-191 347-418 (602)
157 3l4f_A RHO guanine nucleotide 66.4 12 0.00042 26.4 5.2 41 167-214 10-50 (61)
158 1ez3_A Syntaxin-1A; three heli 66.2 22 0.00075 27.3 7.4 32 123-157 47-78 (127)
159 2i1j_A Moesin; FERM, coiled-co 66.1 14 0.00049 36.5 7.7 106 121-226 337-446 (575)
160 2ve7_A Kinetochore protein HEC 65.6 8.7 0.0003 35.2 5.7 46 160-208 181-226 (315)
161 2qyw_A Vesicle transport throu 65.4 43 0.0015 25.5 10.9 20 44-63 17-36 (102)
162 3fpp_A Macrolide-specific effl 65.3 20 0.0007 31.9 8.0 13 214-226 136-148 (341)
163 2q6q_A Spindle POLE BODY compo 65.2 34 0.0012 24.7 7.5 31 70-100 3-33 (74)
164 3ghg_B Fibrinogen beta chain; 65.1 1E+02 0.0035 29.8 13.5 17 46-62 81-97 (461)
165 2d4x_A Flagellar HOOK-associat 65.1 47 0.0016 28.5 10.1 77 110-186 10-89 (248)
166 2pms_C Pneumococcal surface pr 65.0 52 0.0018 26.3 10.6 104 73-185 9-117 (125)
167 3k8w_A Flagellin homolog; flag 64.9 63 0.0021 29.9 11.3 79 108-186 28-109 (326)
168 3vp9_A General transcriptional 64.8 11 0.00037 28.8 5.0 75 46-137 11-86 (92)
169 3cve_A Homer protein homolog 1 64.5 34 0.0012 24.8 7.5 31 121-151 16-46 (72)
170 1d7m_A Cortexillin I; coiled-c 64.3 45 0.0015 25.3 10.7 75 128-209 6-84 (101)
171 2efk_A CDC42-interacting prote 64.1 72 0.0025 27.6 19.6 22 61-82 22-43 (301)
172 1hjb_A Ccaat/enhancer binding 64.0 36 0.0012 25.5 7.8 31 129-159 39-69 (87)
173 3s9g_A Protein hexim1; cyclin 63.3 36 0.0012 26.3 7.7 39 127-165 45-83 (104)
174 3sja_C Golgi to ER traffic pro 63.0 20 0.0007 25.6 5.9 49 142-190 8-58 (65)
175 2odv_A Plectin 1, HD1; plakin 62.5 79 0.0027 27.5 13.4 127 34-184 85-224 (235)
176 1kd8_A GABH AIV, GCN4 acid bas 62.3 21 0.00072 22.5 5.1 30 129-158 4-33 (36)
177 2fcw_A Alpha-2-macroglobulin r 62.3 54 0.0019 25.6 10.9 76 148-225 25-100 (109)
178 3m9b_A Proteasome-associated A 62.2 10 0.00035 33.9 5.3 43 48-90 53-95 (251)
179 2yy0_A C-MYC-binding protein; 61.8 15 0.0005 25.1 4.8 31 126-156 19-49 (53)
180 2dq3_A Seryl-tRNA synthetase; 61.1 10 0.00035 36.1 5.4 25 198-222 74-98 (425)
181 1fxk_A Prefoldin; archaeal pro 60.5 49 0.0017 24.5 10.3 9 169-177 70-78 (107)
182 2x3v_A Syndapin I, protein kin 60.4 92 0.0032 27.7 19.1 49 166-215 185-245 (337)
183 2v66_B Nuclear distribution pr 60.2 60 0.002 25.4 13.9 49 101-162 2-50 (111)
184 4etp_A Kinesin-like protein KA 59.8 22 0.00077 33.5 7.5 25 134-158 11-35 (403)
185 3trt_A Vimentin; cytoskeleton, 59.8 44 0.0015 23.7 9.0 23 166-188 51-73 (77)
186 3ibp_A Chromosome partition pr 59.4 1.1E+02 0.0036 28.1 12.2 36 136-171 79-115 (302)
187 2nrj_A HBL B protein; enteroto 59.4 1.1E+02 0.0037 28.1 14.3 20 162-181 174-193 (346)
188 3a7o_A Autophagy protein 16; c 59.3 48 0.0016 24.0 8.1 55 44-98 20-74 (75)
189 3kqg_A Langerin, C-type lectin 59.1 7.3 0.00025 31.6 3.5 35 145-179 4-38 (182)
190 3l4q_C Phosphatidylinositol 3- 58.8 81 0.0028 26.5 13.3 49 51-99 12-60 (170)
191 1uix_A RHO-associated kinase; 58.7 37 0.0013 24.6 6.7 27 132-158 3-29 (71)
192 3onj_A T-snare VTI1; helix, HA 58.4 56 0.0019 24.5 12.7 21 163-183 71-92 (97)
193 1t2k_D Cyclic-AMP-dependent tr 58.3 41 0.0014 23.0 7.8 23 131-153 27-49 (61)
194 1g6u_A Domain swapped dimer; d 58.3 22 0.00074 23.1 4.9 19 199-217 27-45 (48)
195 3qh9_A Liprin-beta-2; coiled-c 58.1 55 0.0019 24.3 10.2 60 118-180 18-77 (81)
196 3ajw_A Flagellar FLIJ protein; 58.1 64 0.0022 25.1 11.4 43 164-206 74-116 (150)
197 3bas_A Myosin heavy chain, str 58.1 54 0.0019 24.2 10.9 18 136-153 66-83 (89)
198 2a3d_A Protein (de novo three- 58.0 27 0.00092 24.5 5.7 40 145-184 31-71 (73)
199 4dk0_A Putative MACA; alpha-ha 57.8 35 0.0012 30.6 8.2 14 76-89 90-103 (369)
200 3ni0_A Bone marrow stromal ant 57.4 62 0.0021 24.7 12.7 69 71-160 19-87 (99)
201 2y3a_B Phosphatidylinositol 3- 57.2 49 0.0017 30.1 9.0 127 48-185 17-146 (302)
202 3mov_A Lamin-B1; LMNB1, B-type 57.1 36 0.0012 25.8 6.9 20 88-107 23-42 (95)
203 2xzr_A Immunoglobulin-binding 57.0 65 0.0022 24.8 16.5 48 104-158 54-101 (114)
204 3cvf_A Homer-3, homer protein 56.9 32 0.0011 25.4 6.3 29 121-149 22-50 (79)
205 2oee_A UPF0342 protein YHEA; M 56.7 24 0.00081 27.0 6.0 82 106-189 4-86 (117)
206 2v0o_A FCHO2, FCH domain only 56.6 93 0.0032 26.5 19.0 21 193-213 196-216 (276)
207 2xnx_M M protein, M1-BC1; cell 56.3 82 0.0028 25.8 10.4 16 167-182 90-105 (146)
208 1vcs_A Vesicle transport throu 55.6 65 0.0022 24.4 8.9 22 45-66 8-29 (102)
209 2xdj_A Uncharacterized protein 55.5 60 0.0021 24.0 8.6 39 119-157 27-65 (83)
210 3hhm_B NISH2 P85alpha; PI3KCA, 55.1 1.4E+02 0.0046 27.9 15.5 52 44-95 128-179 (373)
211 2lf0_A Uncharacterized protein 55.0 37 0.0013 27.0 6.7 44 147-190 17-62 (123)
212 2akf_A Coronin-1A; coiled coil 54.6 29 0.001 20.9 4.7 25 131-155 4-28 (32)
213 4emc_A Monopolin complex subun 53.7 45 0.0015 28.5 7.6 49 46-94 10-58 (190)
214 1hjb_A Ccaat/enhancer binding 53.5 29 0.001 26.0 5.7 22 121-142 52-73 (87)
215 3m91_A Proteasome-associated A 52.8 50 0.0017 22.3 7.0 33 125-157 15-47 (51)
216 3v47_C Flagellin; innate immun 52.6 42 0.0014 32.1 8.1 77 110-186 9-88 (425)
217 1x8y_A Lamin A/C; structural p 52.2 38 0.0013 25.0 6.2 12 146-157 41-52 (86)
218 3ghg_B Fibrinogen beta chain; 52.1 1.7E+02 0.0056 28.4 12.1 18 208-225 172-189 (461)
219 2xhe_B Syntaxin1; exocytosis, 52.0 1.2E+02 0.0042 26.5 12.8 66 118-183 47-118 (279)
220 3r6n_A Desmoplakin; spectrin r 52.0 1.6E+02 0.0056 28.0 20.8 102 44-146 44-160 (450)
221 3tul_A Cell invasion protein S 52.0 1E+02 0.0034 25.5 10.8 52 136-187 72-123 (158)
222 1s94_A S-syntaxin; three helix 51.1 99 0.0034 25.2 11.8 79 123-206 78-166 (180)
223 3m9b_A Proteasome-associated A 51.1 22 0.00076 31.8 5.5 36 124-159 59-94 (251)
224 1jnm_A Proto-oncogene C-JUN; B 50.7 57 0.002 22.3 7.0 30 127-156 23-52 (62)
225 2wq1_A General control protein 50.2 30 0.001 21.4 4.3 25 130-154 4-28 (33)
226 1ucu_A Phase 1 flagellin; flag 50.1 1.3E+02 0.0044 29.0 11.2 109 75-186 13-128 (494)
227 1cii_A Colicin IA; bacteriocin 50.0 1.9E+02 0.0066 28.2 17.4 32 202-233 504-545 (602)
228 2l5g_B Putative uncharacterize 49.8 48 0.0016 21.6 5.5 30 118-147 8-37 (42)
229 3cvf_A Homer-3, homer protein 49.8 75 0.0026 23.4 9.4 17 84-100 27-43 (79)
230 3csx_A Putative uncharacterize 49.6 67 0.0023 23.8 7.0 59 126-187 15-73 (81)
231 2p22_C Protein SRN2; endosome, 49.4 1.2E+02 0.0041 25.7 11.4 32 125-156 85-116 (192)
232 2j69_A Bacterial dynamin-like 49.4 1.7E+02 0.0057 29.3 12.4 59 121-179 632-691 (695)
233 3lss_A Seryl-tRNA synthetase; 49.3 70 0.0024 31.1 9.2 29 128-156 39-67 (484)
234 3he5_B Synzip2; heterodimeric 49.2 54 0.0018 21.6 6.5 35 122-156 13-47 (52)
235 3pe0_A Plectin; cytoskeleton, 49.2 1.4E+02 0.0048 26.4 14.6 31 66-96 44-74 (283)
236 2no2_A HIP-I, huntingtin-inter 49.1 89 0.003 24.1 16.0 29 112-140 47-75 (107)
237 2js5_A Uncharacterized protein 49.1 73 0.0025 23.0 7.1 56 127-185 4-59 (71)
238 1kd8_B GABH BLL, GCN4 acid bas 48.9 48 0.0016 20.9 5.1 28 129-156 4-31 (36)
239 1m1j_A Fibrinogen alpha subuni 48.6 2E+02 0.0068 27.9 15.4 25 133-157 132-156 (491)
240 3fpp_A Macrolide-specific effl 48.5 59 0.002 28.8 8.1 21 168-188 132-152 (341)
241 3he5_B Synzip2; heterodimeric 48.4 39 0.0013 22.3 4.9 33 191-223 16-48 (52)
242 4etp_A Kinesin-like protein KA 48.3 52 0.0018 31.0 7.9 7 170-176 51-57 (403)
243 3htk_A Structural maintenance 47.9 60 0.0021 21.8 8.2 25 131-155 24-48 (60)
244 3cl3_D NF-kappa-B essential mo 47.9 6.1 0.00021 31.9 1.2 73 123-195 6-79 (130)
245 3m48_A General control protein 47.8 35 0.0012 21.2 4.3 24 130-153 4-27 (33)
246 1wlq_A Geminin; coiled-coil; 2 47.8 84 0.0029 23.4 7.6 38 57-94 32-69 (83)
247 1fmh_A General control protein 47.7 35 0.0012 20.5 4.2 9 145-153 20-28 (33)
248 3viq_A SWI5-dependent recombin 47.1 21 0.00073 28.4 4.3 37 164-200 7-43 (122)
249 3etw_A Adhesin A; antiparallel 46.9 1.1E+02 0.0036 24.3 11.2 59 132-190 40-101 (119)
250 4dk0_A Putative MACA; alpha-ha 46.7 30 0.001 31.1 5.9 11 215-225 138-148 (369)
251 1l8d_A DNA double-strand break 46.5 90 0.0031 23.4 12.5 37 121-157 66-102 (112)
252 1oxz_A ADP-ribosylation factor 46.4 1.3E+02 0.0046 25.3 9.7 35 192-226 107-144 (186)
253 3gp4_A Transcriptional regulat 46.3 1.1E+02 0.0037 24.3 10.2 42 121-162 90-131 (142)
254 3n27_A Fusion glycoprotein F0, 46.1 73 0.0025 23.5 6.7 70 119-188 6-77 (80)
255 2jn6_A Protein CGL2762, transp 46.0 7.3 0.00025 28.5 1.3 33 165-197 60-92 (97)
256 1s1c_X RHO-associated, coiled- 45.4 84 0.0029 22.7 7.9 16 188-203 43-58 (71)
257 3vp9_A General transcriptional 45.4 26 0.0009 26.6 4.3 38 121-158 16-54 (92)
258 3u06_A Protein claret segregat 45.2 62 0.0021 30.6 8.0 35 122-156 6-40 (412)
259 2i1j_A Moesin; FERM, coiled-co 44.4 21 0.00071 35.3 4.7 12 214-225 519-530 (575)
260 1t3j_A Mitofusin 1; coiled coi 44.4 1E+02 0.0035 23.5 7.8 19 143-161 74-92 (96)
261 3iox_A AGI/II, PA; alpha helix 44.3 2.3E+02 0.008 27.6 15.8 25 48-72 8-32 (497)
262 1ybz_A Chorismate mutase; cons 44.3 86 0.0029 23.3 7.1 36 120-155 18-53 (91)
263 2wt7_B Transcription factor MA 44.1 77 0.0026 23.9 6.8 12 171-182 76-87 (90)
264 3ra3_B P2F; coiled coil domain 44.0 23 0.00079 20.6 2.9 23 67-89 4-26 (28)
265 1avy_A Fibritin, gpwac M; bact 43.9 36 0.0012 24.7 4.6 36 118-153 7-42 (74)
266 3mud_A DNA repair protein XRCC 43.9 99 0.0034 26.1 8.1 47 104-156 126-172 (175)
267 2xzr_A Immunoglobulin-binding 43.6 1.1E+02 0.0037 23.5 15.4 29 71-99 14-42 (114)
268 1uii_A Geminin; human, DNA rep 43.4 99 0.0034 23.0 8.1 38 57-94 40-77 (83)
269 4fm3_A Uncharacterized hypothe 43.4 1.1E+02 0.0037 23.4 9.9 66 78-157 30-95 (98)
270 3sjb_C Golgi to ER traffic pro 43.0 58 0.002 24.8 5.9 22 166-187 58-79 (93)
271 2gjh_A Designed protein; oblig 42.6 5.5 0.00019 27.2 0.1 24 16-39 35-58 (62)
272 2dgc_A Protein (GCN4); basic d 42.6 79 0.0027 22.0 6.3 6 172-177 52-57 (63)
273 3plt_A Sphingolipid long chain 42.4 1.8E+02 0.0061 25.6 16.9 92 100-200 88-179 (234)
274 3w03_C DNA repair protein XRCC 42.4 54 0.0018 27.9 6.3 40 104-149 143-182 (184)
275 2lf0_A Uncharacterized protein 42.2 46 0.0016 26.5 5.4 22 121-142 38-59 (123)
276 1gqe_A Release factor 2, RF2; 42.2 2.2E+02 0.0075 26.6 14.1 21 208-228 95-116 (365)
277 1fzc_C Fibrin; blood coagulati 42.0 17 0.00058 33.5 3.4 39 108-149 3-41 (319)
278 1io1_A Phase 1 flagellin; beta 41.9 86 0.0029 29.4 8.4 74 116-189 3-79 (398)
279 2b9c_A Striated-muscle alpha t 41.5 1.4E+02 0.0048 24.2 13.7 43 118-160 79-121 (147)
280 3c3f_A Alpha/beta peptide with 41.4 50 0.0017 20.5 4.3 24 130-153 5-28 (34)
281 2vkl_A RV0948C/MT0975; helical 41.0 66 0.0022 23.8 6.0 37 120-156 13-49 (90)
282 4dnd_A Syntaxin-10, SYN10; str 40.9 1.3E+02 0.0046 23.8 11.6 47 134-180 75-128 (130)
283 3c3g_A Alpha/beta peptide with 40.7 52 0.0018 20.3 4.3 24 130-153 4-27 (33)
284 1t6f_A Geminin; coiled-coil, c 40.3 68 0.0023 20.2 5.0 29 118-146 6-34 (37)
285 3ryc_E Stathmin-4; alpha-tubul 40.2 1.5E+02 0.0052 24.2 13.4 15 40-54 41-55 (143)
286 1y1u_A Signal transducer and a 40.1 1.3E+02 0.0043 30.1 9.5 32 121-152 21-52 (585)
287 2yo3_A General control protein 40.0 1.1E+02 0.0037 27.5 8.2 38 122-159 219-256 (268)
288 2oxj_A Hybrid alpha/beta pepti 39.9 54 0.0018 20.4 4.3 24 130-153 5-28 (34)
289 1a93_B MAX protein, coiled coi 39.8 51 0.0017 20.6 4.2 20 130-149 11-30 (34)
290 3u06_A Protein claret segregat 39.6 88 0.003 29.6 8.0 29 124-152 29-57 (412)
291 2d8d_A Aroag, phospho-2-dehydr 39.5 77 0.0026 23.0 6.2 35 121-155 5-39 (90)
292 3sja_C Golgi to ER traffic pro 39.4 54 0.0018 23.3 4.9 52 162-222 4-55 (65)
293 2aze_B Transcription factor E2 39.3 63 0.0021 24.9 5.8 35 128-162 8-42 (106)
294 2j1d_G DAAM1, disheveled-assoc 39.3 2.6E+02 0.0089 26.6 12.1 29 156-184 333-362 (483)
295 1uii_A Geminin; human, DNA rep 38.9 1.2E+02 0.0041 22.6 7.3 45 103-147 29-74 (83)
296 1gu4_A CAAT/enhancer binding p 38.8 68 0.0023 23.4 5.6 18 121-138 52-69 (78)
297 1sjj_A Actinin; 3-helix bundle 38.7 3.2E+02 0.011 27.4 14.3 32 65-96 406-437 (863)
298 1naf_A ADP-ribosylation factor 38.5 1.7E+02 0.0057 24.1 9.0 35 192-226 91-128 (158)
299 2yo3_A General control protein 38.4 68 0.0023 28.9 6.6 48 100-157 214-261 (268)
300 1yhn_B RILP, RAB interacting l 38.2 90 0.0031 22.0 5.8 52 134-187 4-58 (65)
301 1a93_B MAX protein, coiled coi 38.2 23 0.00078 22.2 2.4 28 177-204 6-33 (34)
302 2ve7_A Kinetochore protein HEC 38.2 47 0.0016 30.2 5.7 21 135-155 187-207 (315)
303 3kqg_A Langerin, C-type lectin 37.7 25 0.00084 28.3 3.4 11 147-157 23-33 (182)
304 3viq_A SWI5-dependent recombin 37.5 83 0.0028 24.9 6.4 62 67-155 4-65 (122)
305 2hy6_A General control protein 37.5 62 0.0021 20.1 4.3 27 129-155 4-30 (34)
306 3vem_A Helicase protein MOM1; 37.2 1.5E+02 0.0052 23.3 9.0 20 121-140 34-53 (115)
307 2xdj_A Uncharacterized protein 37.2 1.2E+02 0.0042 22.3 10.1 41 122-162 23-63 (83)
308 4dci_A Uncharacterized protein 37.2 1E+02 0.0034 25.3 7.0 59 142-200 31-95 (150)
309 2efr_A General control protein 37.0 1.7E+02 0.006 24.0 23.3 117 62-182 13-137 (155)
310 1uo4_A General control protein 36.8 64 0.0022 20.0 4.3 24 130-153 5-28 (34)
311 3emo_C HIA (adhesin); transmem 36.8 19 0.00064 30.1 2.5 41 193-233 52-92 (162)
312 3a2a_A Voltage-gated hydrogen 36.7 68 0.0023 22.2 4.9 40 183-222 9-48 (58)
313 3efg_A Protein SLYX homolog; x 36.4 1.2E+02 0.0041 21.9 7.2 49 44-99 16-64 (78)
314 1jnm_A Proto-oncogene C-JUN; B 36.3 46 0.0016 22.9 4.2 11 143-153 25-35 (62)
315 2zvf_A Alanyl-tRNA synthetase; 36.2 77 0.0026 25.4 6.3 20 165-184 33-52 (171)
316 3oa7_A Head morphogenesis prot 36.0 66 0.0023 27.8 5.9 46 121-166 32-78 (206)
317 3oa7_A Head morphogenesis prot 35.5 1.3E+02 0.0043 26.0 7.5 27 127-153 31-57 (206)
318 2xv5_A Lamin-A/C; structural p 35.3 1.2E+02 0.0042 21.7 6.6 24 124-147 17-40 (74)
319 1qvr_A CLPB protein; coiled co 35.3 2.7E+02 0.0091 28.3 11.4 26 165-190 431-456 (854)
320 2q6q_A Spindle POLE BODY compo 35.3 1.2E+02 0.0042 21.7 7.3 33 120-152 4-36 (74)
321 2aze_B Transcription factor E2 35.0 62 0.0021 24.9 5.1 36 121-156 8-43 (106)
322 2ve7_C Kinetochore protein NUF 34.7 37 0.0013 30.0 4.3 62 118-189 147-208 (250)
323 3haj_A Human pacsin2 F-BAR; pa 34.6 3E+02 0.01 26.0 20.6 24 63-86 39-62 (486)
324 1f5n_A Interferon-induced guan 34.6 3.5E+02 0.012 26.7 16.1 16 164-179 567-582 (592)
325 1gk6_A Vimentin; intermediate 34.0 1.1E+02 0.0038 20.8 7.1 36 122-157 10-45 (59)
326 2bni_A General control protein 34.0 76 0.0026 19.7 4.3 24 130-153 5-28 (34)
327 3abh_A Pacsin2, protein kinase 33.9 2.4E+02 0.0081 24.6 18.0 163 49-232 32-211 (312)
328 1ecm_A Endo-oxabicyclic transi 33.8 99 0.0034 23.3 6.2 35 121-155 7-41 (109)
329 3ibp_A Chromosome partition pr 33.7 2.3E+02 0.0079 25.8 9.4 19 137-155 21-39 (302)
330 2js5_A Uncharacterized protein 33.6 1.3E+02 0.0046 21.6 7.4 60 167-226 6-65 (71)
331 3rmi_A Chorismate mutase prote 33.1 1.6E+02 0.0056 22.5 10.3 36 120-155 13-48 (114)
332 1nkp_B MAX protein, MYC proto- 32.6 62 0.0021 23.3 4.6 23 131-153 52-74 (83)
333 1deb_A APC protein, adenomatou 32.5 1.2E+02 0.004 20.6 7.6 24 118-141 9-32 (54)
334 3fb2_A Spectrin alpha chain, b 32.5 2.1E+02 0.007 23.4 15.0 28 64-91 47-74 (218)
335 2wt7_A Proto-oncogene protein 32.5 1.2E+02 0.0041 20.8 6.8 24 130-153 27-50 (63)
336 3sjb_C Golgi to ER traffic pro 32.4 84 0.0029 23.9 5.3 24 66-89 19-42 (93)
337 2p01_A Alpha-2-macroglobulin r 32.3 2.9E+02 0.0098 25.4 9.9 71 148-224 239-313 (323)
338 1zxa_A CGMP-dependent protein 32.0 88 0.003 22.3 5.1 13 148-160 40-52 (67)
339 2ke4_A CDC42-interacting prote 31.8 1.7E+02 0.0057 22.2 11.2 22 205-226 61-82 (98)
340 3i9y_A Sensor protein; stacked 31.8 2.8E+02 0.0095 24.8 11.5 87 142-232 39-129 (276)
341 3pe0_A Plectin; cytoskeleton, 31.8 2.7E+02 0.0091 24.5 16.5 28 197-224 155-182 (283)
342 1wlx_A Alpha-actinin 4; three- 31.5 1.3E+02 0.0045 24.0 6.7 75 58-151 10-84 (129)
343 3vbb_A Seryl-tRNA synthetase, 31.5 1.7E+02 0.0058 28.7 8.7 37 118-154 33-69 (522)
344 2k48_A Nucleoprotein; viral pr 31.4 1.8E+02 0.0062 22.5 10.4 31 70-100 42-72 (107)
345 3qh9_A Liprin-beta-2; coiled-c 30.9 1.6E+02 0.0055 21.7 7.7 55 131-188 17-71 (81)
346 2w83_C C-JUN-amino-terminal ki 30.8 1.6E+02 0.0054 21.6 10.1 38 118-155 8-45 (77)
347 1j1d_B Troponin T, TNT; THIN f 30.7 1.8E+02 0.0063 22.3 7.3 36 123-158 46-81 (106)
348 2de0_X Alpha-(1,6)-fucosyltran 30.6 3.7E+02 0.013 26.0 11.1 59 26-89 7-67 (526)
349 3csx_A Putative uncharacterize 30.4 1.1E+02 0.0039 22.6 5.6 22 206-227 57-78 (81)
350 1s35_A Beta-I spectrin, spectr 30.4 2.1E+02 0.0073 23.0 14.6 32 63-94 33-64 (214)
351 3htk_B Structural maintenance 30.1 1.4E+02 0.0049 20.9 6.6 36 127-162 5-40 (73)
352 4aj5_1 SKA3, spindle and kinet 30.0 1.9E+02 0.0064 22.2 7.8 35 128-162 44-78 (101)
353 3d2f_A Heat shock protein homo 30.0 4.1E+02 0.014 26.3 11.6 49 166-215 603-651 (675)
354 2wvr_A Geminin; DNA replicatio 29.8 2.2E+02 0.0074 24.6 8.1 37 58-94 110-146 (209)
355 3iv1_A Tumor susceptibility ge 29.7 1.7E+02 0.0057 21.5 10.6 61 122-185 14-74 (78)
356 1r73_A TM1492, 50S ribosomal p 29.3 1.2E+02 0.0042 21.2 5.5 48 164-214 9-56 (66)
357 3he4_A Synzip6; heterodimeric 29.3 96 0.0033 20.6 4.5 15 145-159 36-50 (56)
358 1use_A VAsp, vasodilator-stimu 29.2 44 0.0015 22.1 2.8 7 174-180 33-39 (45)
359 2f1m_A Acriflavine resistance 29.0 1.5E+02 0.005 25.3 7.2 14 76-89 73-86 (277)
360 2pnv_A Small conductance calci 29.0 78 0.0027 20.6 4.0 28 154-181 12-40 (43)
361 1fio_A SSO1 protein; four heli 28.9 2.3E+02 0.0079 22.9 13.4 21 121-141 11-31 (196)
362 2w6b_A RHO guanine nucleotide 28.6 1.4E+02 0.0049 20.4 6.9 31 64-94 4-34 (56)
363 3f6n_A Virion-associated prote 28.4 2.2E+02 0.0077 22.6 7.6 55 128-182 4-59 (129)
364 3fx0_A NF-kappa-B essential mo 28.3 42 0.0014 25.7 3.0 46 107-152 43-88 (96)
365 2zxx_A Geminin; coiled-coil, c 28.1 1.8E+02 0.0061 21.4 7.6 39 103-141 17-56 (79)
366 4emc_A Monopolin complex subun 27.9 2.8E+02 0.0096 23.6 8.7 15 127-141 14-28 (190)
367 2zdi_C Prefoldin subunit alpha 27.9 1.6E+02 0.0056 23.3 6.8 92 134-225 10-138 (151)
368 3kin_B Kinesin heavy chain; mo 27.8 98 0.0033 24.0 5.2 18 143-160 99-116 (117)
369 3vlc_E Golgi to ER traffic pro 27.8 75 0.0026 24.2 4.3 44 145-188 35-80 (94)
370 2f1m_A Acriflavine resistance 27.3 1.4E+02 0.0048 25.4 6.8 10 215-224 121-130 (277)
371 1sf9_A YFHH hypothetical prote 27.1 48 0.0016 26.6 3.3 34 195-228 16-54 (128)
372 1tu3_F RAB GTPase binding effe 26.6 1E+02 0.0034 22.6 4.6 42 57-107 23-64 (79)
373 1e52_A Excinuclease ABC subuni 26.5 91 0.0031 21.8 4.3 40 168-209 21-60 (63)
374 1qys_A TOP7; alpha-beta, novel 26.5 7.6 0.00026 29.1 -1.4 23 16-38 79-101 (106)
375 1gk6_A Vimentin; intermediate 26.4 1.5E+02 0.0053 20.1 6.1 39 45-83 10-48 (59)
376 2xus_A Breast cancer metastasi 26.4 1.2E+02 0.0043 20.3 4.8 38 141-178 7-46 (49)
377 3q0x_A Centriole protein; cent 26.2 2.8E+02 0.0097 24.1 8.4 43 118-160 170-212 (228)
378 3viq_B Mating-type switching p 25.9 1.8E+02 0.0062 21.6 6.1 45 134-178 2-49 (85)
379 2d4y_A HAP1, flagellar HOOK-as 25.7 3.7E+02 0.013 25.1 10.0 76 136-211 67-148 (463)
380 2zjr_V 50S ribosomal protein L 25.7 1.2E+02 0.0041 21.3 4.9 49 163-214 8-56 (67)
381 2wvr_A Geminin; DNA replicatio 25.7 2.2E+02 0.0074 24.6 7.3 38 101-138 96-134 (209)
382 1pya_A Pyruvoyl-dependent hist 25.3 21 0.00073 26.4 0.8 22 239-266 18-39 (81)
383 2k48_A Nucleoprotein; viral pr 25.2 2.4E+02 0.0082 21.8 8.1 63 120-185 36-103 (107)
384 3okq_A BUD site selection prot 25.0 2.8E+02 0.0095 22.5 12.6 37 153-189 89-125 (141)
385 1ytz_T Troponin T; muscle, THI 24.9 1.4E+02 0.0048 23.1 5.6 37 123-159 46-82 (107)
386 1vq8_V 50S ribosomal protein L 24.9 1.5E+02 0.0053 20.9 5.4 48 164-213 12-59 (71)
387 2zxx_A Geminin; coiled-coil, c 24.8 2.1E+02 0.0071 21.0 8.0 42 139-180 33-74 (79)
388 3vlc_E Golgi to ER traffic pro 24.7 23 0.0008 27.0 1.0 35 154-188 53-87 (94)
389 2ve7_C Kinetochore protein NUF 24.6 50 0.0017 29.1 3.3 15 170-184 168-182 (250)
390 3u0c_A Invasin IPAB, 62 kDa an 24.3 3.2E+02 0.011 23.0 11.6 33 130-162 114-146 (201)
391 3aco_A Pacsin2, protein kinase 24.2 3.8E+02 0.013 23.8 20.0 21 194-214 233-253 (350)
392 1e52_A Excinuclease ABC subuni 24.0 1.7E+02 0.0058 20.4 5.4 37 144-180 21-59 (63)
393 2r2v_A GCN4 leucine zipper; co 23.9 1.4E+02 0.0046 18.6 4.7 24 130-153 5-28 (34)
394 1uru_A Amphiphysin; endocytosi 23.9 3.1E+02 0.011 22.7 17.0 30 44-73 39-68 (244)
395 1aa0_A Fibritin, gpwac E; bact 23.9 2E+02 0.0067 22.3 6.1 54 90-153 31-84 (113)
396 1yvl_A Signal transducer and a 23.8 5.8E+02 0.02 25.8 18.2 17 80-96 77-93 (683)
397 2l5g_A GPS2 protein, G protein 23.8 1.4E+02 0.0047 18.9 4.3 25 121-145 10-34 (38)
398 3aco_A Pacsin2, protein kinase 23.8 3.8E+02 0.013 23.7 19.1 26 61-86 44-69 (350)
399 3fx7_A Putative uncharacterize 23.8 2.4E+02 0.0082 21.3 9.8 62 119-180 20-86 (94)
400 3pxg_A Negative regulator of g 23.7 1.2E+02 0.0042 28.4 6.1 32 161-192 417-448 (468)
401 1lwu_B Fibrinogen beta chain; 23.7 1.3E+02 0.0044 27.6 6.0 13 71-83 3-15 (323)
402 2gr7_A Adhesin; trimeric autot 23.6 25 0.00085 28.2 1.0 24 211-234 37-60 (129)
403 2l3l_A Tubulin-specific chaper 23.2 2.6E+02 0.0088 21.5 8.7 48 139-186 57-106 (111)
404 1g8x_A Myosin II heavy chain f 22.9 1.3E+02 0.0045 31.8 6.6 22 115-136 922-943 (1010)
405 2bnx_A Diaphanous protein homo 22.9 12 0.0004 35.1 -1.3 47 124-176 338-384 (386)
406 3k29_A Putative uncharacterize 22.8 3.4E+02 0.011 22.7 15.9 40 78-117 31-73 (169)
407 3ret_A Salicylate biosynthesis 22.7 1.2E+02 0.0041 22.6 4.7 36 120-155 9-44 (101)
408 2qag_B Septin-6, protein NEDD5 22.4 18 0.00063 34.5 0.0 50 142-191 343-393 (427)
409 2dgc_A Protein (GCN4); basic d 22.4 1E+02 0.0036 21.3 4.0 31 126-156 30-60 (63)
410 3ck6_A Putative membrane trans 22.4 2.5E+02 0.0084 23.6 7.3 17 101-117 209-225 (252)
411 1wlq_A Geminin; coiled-coil; 2 22.4 2.4E+02 0.0083 20.9 7.9 39 105-143 23-62 (83)
412 1lrz_A FEMA, factor essential 22.2 2.5E+02 0.0087 25.8 7.9 22 166-187 249-270 (426)
413 1d7m_A Cortexillin I; coiled-c 22.2 2.6E+02 0.0088 21.1 15.9 35 73-107 17-51 (101)
414 3zx6_A HAMP, methyl-accepting 22.1 4.2E+02 0.014 23.6 23.9 32 143-174 125-156 (341)
415 1u2m_A Histone-like protein HL 22.0 49 0.0017 26.0 2.5 77 113-192 27-114 (143)
416 2rjz_A PILO protein; structura 21.9 2.4E+02 0.0083 22.4 6.7 36 152-187 3-38 (147)
417 1gax_A Valrs, valyl-tRNA synth 21.8 1.5E+02 0.0051 30.7 6.7 22 134-155 801-822 (862)
418 3ter_A Mammalian stromal inter 21.4 3.2E+02 0.011 22.0 7.5 51 126-185 59-111 (136)
419 2j69_A Bacterial dynamin-like 21.3 6.1E+02 0.021 25.1 15.0 55 168-222 634-688 (695)
420 2nrj_A HBL B protein; enteroto 21.1 4.7E+02 0.016 23.8 15.8 16 173-188 178-193 (346)
421 4h22_A Leucine-rich repeat fli 21.1 2.9E+02 0.0098 21.3 10.2 67 120-189 17-83 (103)
422 3iz5_c 60S ribosomal protein L 20.8 3.1E+02 0.011 21.6 7.3 47 164-213 14-60 (124)
423 3i9w_A Sensor protein TORS; st 20.7 4.6E+02 0.016 23.5 14.2 87 140-233 50-140 (290)
424 4g2k_A General control protein 20.6 3.2E+02 0.011 21.6 9.5 64 121-191 23-87 (125)
425 3r8s_Y 50S ribosomal protein L 20.4 89 0.003 21.7 3.3 45 165-212 10-54 (63)
426 3pdy_A Plectin; cytoskeleton, 20.3 3.6E+02 0.012 22.1 17.3 37 62-98 37-73 (210)
427 3fhn_A Protein transport prote 20.3 4.2E+02 0.014 26.9 9.5 47 127-173 11-57 (706)
428 3hd7_B Syntaxin-1A; membrane p 20.2 2.8E+02 0.0097 20.9 10.3 43 118-160 13-55 (109)
429 3he4_B Synzip5; heterodimeric 20.1 1.8E+02 0.0061 18.6 4.3 26 167-192 16-41 (46)
430 1fzc_A Fibrin; blood coagulati 20.1 1.4E+02 0.0047 22.3 4.4 41 182-222 4-44 (87)
No 1
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.73 E-value=0.0038 Score=55.94 Aligned_cols=57 Identities=7% Similarity=0.143 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhhhhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 101 DAEVRELYEKSLKLDAELR------VIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLA 157 (278)
Q Consensus 101 e~~~r~l~~k~~kleaelr------~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~ 157 (278)
+..+..+-.++.+.+..+. ...++..||..+..++..+.....++..++..++.++.
T Consensus 66 e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~ 128 (256)
T 3na7_A 66 EQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQE 128 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555543 23444444444444444444444444444444444433
No 2
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=97.63 E-value=0.0016 Score=69.58 Aligned_cols=123 Identities=13% Similarity=0.124 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 65 NQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQE 144 (278)
Q Consensus 65 nqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqe 144 (278)
+..|-.....|++.|.....+...|...+.......+.++-+|-.....||......+..++++..+..++.++....++
T Consensus 923 ~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~ 1002 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQ 1002 (1080)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444433333333344442223333333333344444444445555554444444
Q ss_pred HHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhh
Q 023697 145 MIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAI 187 (278)
Q Consensus 145 L~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~raa~ 187 (278)
+..+...++..+.+...+ ..++..|++|...|++++..+...+
T Consensus 1003 ~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~ 1046 (1080)
T 2dfs_A 1003 TQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRI 1046 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555544444444 4556666666666666666655433
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.51 E-value=0.0004 Score=74.53 Aligned_cols=10 Identities=0% Similarity=0.159 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 023697 47 LEDRIAIQHS 56 (278)
Q Consensus 47 Le~~L~~q~~ 56 (278)
+++++.....
T Consensus 862 L~~eL~el~~ 871 (1184)
T 1i84_S 862 KDEELQRTKE 871 (1184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334433333
No 4
>1gxl_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 3.0A {Thermotoga maritima} SCOP: d.215.1.1
Probab=97.50 E-value=2.7e-05 Score=66.68 Aligned_cols=53 Identities=9% Similarity=0.060 Sum_probs=37.5
Q ss_pred cccCceEE---------Eeec--CC-CcccccCCccCCCCCCCCCCCCCCCCchHHHHHHHHHHHHH
Q 023697 2 NIYGNSLH---------TTLH--NH-SQFTMSGRRVLREPPLSTRALPPQHSPSLHHLEDRIAIQHS 56 (278)
Q Consensus 2 ~ifG~tli---------vtfh--p~-~svTleGD~ydpeG~LsGGs~p~~~~~l~~~Le~~L~~q~~ 56 (278)
.+||+++| +.+. |+ ++||++||+++|+|.++||+.+..++++ ....+|...+.
T Consensus 140 ~~lg~~~vv~~l~~A~~~~~~~~~~~~~VT~~G~~~~~~G~~~gg~~~~~~~~l--~~~~el~~l~~ 204 (213)
T 1gxl_A 140 FLFGNSVVVETLDDAIRMKKKYRLNTRIATLDGELISGRGAITGGREERSSNVF--ERRIKLKHLEQ 204 (213)
T ss_dssp HHSSSEEEESSHHHHHHHHHHTCSSCEEECTTSCEECTTSCEEECCCSSCCCTT--HHHHHHHHHHH
T ss_pred HHhCCEEEECCHHHHHHHHHhcCCCceEEecCCeEEcCCceEECCCCccccchh--hHHHHHHHHHH
Confidence 36999999 3443 33 8999999999999999999864345555 33444444433
No 5
>2wd5_B Structural maintenance of chromosomes protein 3; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}
Probab=97.44 E-value=2.2e-05 Score=67.85 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=31.4
Q ss_pred cccCceEE---------EeecCC-CcccccCCccCCCCCCCCCCCCCCCCch
Q 023697 2 NIYGNSLH---------TTLHNH-SQFTMSGRRVLREPPLSTRALPPQHSPS 43 (278)
Q Consensus 2 ~ifG~tli---------vtfhp~-~svTleGD~ydpeG~LsGGs~p~~~~~l 43 (278)
.+||+++| +.+.++ ++||++||+++|+|.++||+.+...+.+
T Consensus 142 ~~l~~~~vv~~l~~A~~l~~~~~~~~VTldG~~~~~~G~~tgG~~~~~~~~l 193 (213)
T 2wd5_B 142 HVFGKTLICRSMEVSTQLARAFTMDCITLEGDQVSHRGALTGGYYDTRKSRL 193 (213)
T ss_dssp HHHTTEEEESSHHHHHHHHHHSSCEEECTTCCEECTTSCEEECCCCCC---H
T ss_pred HHcCCEEEECCHHHHHHHHHhcCceEEeCCCcEECCCeEEECCCCCCCccHh
Confidence 36899999 444434 8999999999999999999865443444
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.31 E-value=0.052 Score=48.48 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=22.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhH
Q 023697 58 IQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAER 100 (278)
Q Consensus 58 Iq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~ 100 (278)
+|.+.....++......|..+|...+.++..+...+.....+.
T Consensus 13 LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l 55 (256)
T 3na7_A 13 ISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEK 55 (256)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445555555555555555555555444443
No 7
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=97.10 E-value=0.014 Score=46.75 Aligned_cols=99 Identities=13% Similarity=0.284 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHH
Q 023697 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIES 123 (278)
Q Consensus 44 ~~~Le~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~ 123 (278)
+...+..|..+...|...-.++-++..+...++..+..-+. |.|.++.....
T Consensus 15 ~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~----------------------------KyE~E~~~r~~ 66 (119)
T 3ol1_A 15 GDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE----------------------------KLQEEMLQREE 66 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------hhHHHHHHHHH
Confidence 55677778777777777777777666655544444333322 33344555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHH
Q 023697 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIK 170 (278)
Q Consensus 124 lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~Lk 170 (278)
++.++..++.++..+.-.+-+|..+|++|+.||.=++.. ..-+.+|+
T Consensus 67 ~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~heeEl~eLq 114 (119)
T 3ol1_A 67 AENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQ 114 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888899999999999999999999999888776554 44444433
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.99 E-value=0.017 Score=61.65 Aligned_cols=85 Identities=8% Similarity=0.054 Sum_probs=50.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-HHHHHHHHHHHHHHHHhhhh
Q 023697 107 LYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKD-MAAIKAEIETERQEIHKGRA 185 (278)
Q Consensus 107 l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~k-l~~LkaEIe~LrqEl~~~ra 185 (278)
+.+...+|..++...+...+|+.++.+.+..|..+..+|..+++.+.+|........++ ...|...|..|++|.+++|.
T Consensus 958 ~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~q 1037 (1080)
T 2dfs_A 958 YSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKT 1037 (1080)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555566666666666666666666666666666666665554222 24666666677777777776
Q ss_pred hhhhhh
Q 023697 186 AIECEK 191 (278)
Q Consensus 186 a~e~ek 191 (278)
.++.-.
T Consensus 1038 q~~~l~ 1043 (1080)
T 2dfs_A 1038 EKEELN 1043 (1080)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666543
No 9
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.88 E-value=0.17 Score=42.96 Aligned_cols=42 Identities=10% Similarity=0.192 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 023697 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKD 165 (278)
Q Consensus 124 lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~k 165 (278)
+...|.+-+.+.........+|...|..|..||.+.....++
T Consensus 74 LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k 115 (168)
T 3o0z_A 74 LQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEK 115 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444455666666666666665544333
No 10
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.81 E-value=0.11 Score=44.89 Aligned_cols=35 Identities=9% Similarity=0.059 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 125 HAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKA 159 (278)
Q Consensus 125 k~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~ 159 (278)
+....+++..|.+|...-.+|......+..-+.+|
T Consensus 101 ~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~ 135 (189)
T 2v71_A 101 RAIKEQLHKYVRELEQANDDLERAKRATIMSLEDF 135 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHH
Confidence 33333333333333333333333333333333333
No 11
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.45 E-value=0.44 Score=56.13 Aligned_cols=58 Identities=7% Similarity=0.119 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHh
Q 023697 170 KAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEK 227 (278)
Q Consensus 170 kaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael~n~~~ 227 (278)
++++..+..++..+.+....-+..=.+.-+.++.++.++-...+|.++|..|+..+++
T Consensus 2013 r~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~ 2070 (3245)
T 3vkg_A 2013 REEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKN 2070 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444333333333333444445555555555555555555555555543
No 12
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=96.40 E-value=0.03 Score=55.08 Aligned_cols=78 Identities=3% Similarity=0.199 Sum_probs=46.4
Q ss_pred hhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhccHHHHHHH
Q 023697 94 ASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVI-KQEMIKDLNEINGDLAKARDESKDMAAIKAE 172 (278)
Q Consensus 94 ~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~-rqeL~~evq~LekDL~~~~~d~~kl~~LkaE 172 (278)
..+..+.+.+++.+ .+.++..+.+.. +....... -.+|...|+.|+..|.. ..++|..|+.-
T Consensus 77 sKnsKdseqy~k~~-------------~E~Lr~rq~q~~-dNdNtynE~S~ELRRrIqyLKekVdn---QlsnIrvLQsn 139 (562)
T 3ghg_A 77 QKNNKDSHSLTTNI-------------MEILRGDFSSAN-NRDNTYNRVSEDLRSRIEVLKRKVIE---KVQHIQLLQKN 139 (562)
T ss_dssp HHHHHHHHHHHHHH-------------HHTTSSHHHHHH-HHHHHHHHTTHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HhhchhHHHHHHHH-------------HHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 33444555556666 444554444444 33332222 33666666666666554 35778888888
Q ss_pred HHHHHHHHHhhhhhhh
Q 023697 173 IETERQEIHKGRAAIE 188 (278)
Q Consensus 173 Ie~LrqEl~~~raa~e 188 (278)
|+.++.+|+|++.+|+
T Consensus 140 Ledq~~kIQRLEvDId 155 (562)
T 3ghg_A 140 VRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888887775
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.38 E-value=0.032 Score=54.53 Aligned_cols=23 Identities=17% Similarity=0.120 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhh
Q 023697 171 AEIETERQEIHKGRAAIECEKKN 193 (278)
Q Consensus 171 aEIe~LrqEl~~~raa~e~ekk~ 193 (278)
++++.+++|+.+++..++..|+.
T Consensus 537 ~~~~~~~~~~~~le~~~~~~~~~ 559 (597)
T 3oja_B 537 KETEDLEQENIALEKQLDNKRAK 559 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHhhhHHHHHHHhhhhhH
Confidence 33333444444444444444333
No 14
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.27 E-value=0.75 Score=54.22 Aligned_cols=55 Identities=9% Similarity=0.075 Sum_probs=32.1
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHH
Q 023697 164 KDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERL 218 (278)
Q Consensus 164 ~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~ekl 218 (278)
.+|.+++++|..+..+|..+...|+.-.+....+-.+++.+++.|.+-.+=|..|
T Consensus 2028 ~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL 2082 (3245)
T 3vkg_A 2028 LKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNL 2082 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455566666666666666666665555555556666666666666554434333
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.14 E-value=0.076 Score=51.83 Aligned_cols=61 Identities=13% Similarity=0.074 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHh
Q 023697 167 AAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEK 227 (278)
Q Consensus 167 ~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael~n~~~ 227 (278)
..+..+++..+++++.....++..++...+.-.+.+.|.+.+..+.+|+.++++|+...+.
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 519 AFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444445545555555555555666666777777777888888888888866653
No 16
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=96.06 E-value=0.23 Score=39.59 Aligned_cols=70 Identities=16% Similarity=0.283 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhh
Q 023697 113 KLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIE 188 (278)
Q Consensus 113 kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e 188 (278)
+|+.+ ++.++..+...+...+.-...|+.+..++..+.+++.... .. --+|+..|++|+.||.=++.-++
T Consensus 38 ~l~le---ldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~--l~-r~dLE~~iesL~eEl~FLKk~he 107 (119)
T 3ol1_A 38 RVEVE---RDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNAS--LA-RLDLERKVESLQEEIAFLKKLHE 107 (119)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHH--HH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555 5666677777777777777788888888888888876532 11 13355566666655544444433
No 17
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=95.94 E-value=0.15 Score=38.62 Aligned_cols=79 Identities=11% Similarity=0.232 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 74 ALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEIN 153 (278)
Q Consensus 74 ~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~Le 153 (278)
.||++|..+..+-.++...+.+.+..- -+=-.|.|.|+.....+..++.-++.++..+.-.+-+|..+|.+|.
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~-------edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~ 76 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDI-------MRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 455666666666555555554433322 1223466777777777778888888888888888888888887777
Q ss_pred HHHHHH
Q 023697 154 GDLAKA 159 (278)
Q Consensus 154 kDL~~~ 159 (278)
.+|.=+
T Consensus 77 eEl~fL 82 (86)
T 3swk_A 77 EEIAFL 82 (86)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776543
No 18
>2wd5_A Structural maintenance of chromosomes protein 1A; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}
Probab=95.68 E-value=0.0012 Score=58.08 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=28.5
Q ss_pred cccCceEE---------EeecC--C-CcccccCCccCCCCCCCCCC
Q 023697 2 NIYGNSLH---------TTLHN--H-SQFTMSGRRVLREPPLSTRA 35 (278)
Q Consensus 2 ~ifG~tli---------vtfhp--~-~svTleGD~ydpeG~LsGGs 35 (278)
.+||+++| +.|.. . ++||++||+++|+|.++||+
T Consensus 151 ~~Lg~~~vv~dl~~A~~l~~~~~~~~r~VTldG~~~~~~G~~tGG~ 196 (233)
T 2wd5_A 151 YACGNALVCDNVEDARRIAFGGHQRHKTVALDGTLFQKSGVISGGA 196 (233)
T ss_dssp HHTTTCEEESSHHHHHHHHHSSSSCCCEEETTCCEECTTSCEEECH
T ss_pred HHhCCEEEECCHHHHHHHHHhcCCCceEEecCCEEEeCCeeEeCCC
Confidence 36899999 45442 3 99999999999999999997
No 19
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.65 E-value=0.95 Score=39.05 Aligned_cols=13 Identities=31% Similarity=0.360 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 023697 77 QELSLAEQELRHL 89 (278)
Q Consensus 77 qEL~laqhEL~~l 89 (278)
+.+..++.+|.-+
T Consensus 24 q~~~~le~El~EF 36 (189)
T 2v71_A 24 QSFQEARDELVEF 36 (189)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444333
No 20
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.58 E-value=0.52 Score=39.44 Aligned_cols=81 Identities=14% Similarity=0.262 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 70 ATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDL 149 (278)
Q Consensus 70 ~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~ev 149 (278)
.....|..+|..+.++|.....++..+...++ +++.+ .........|+..+..++.+-...|.+.....
T Consensus 13 n~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~-~~~~l----------~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~ 81 (154)
T 2ocy_A 13 DKQSHLEEQLNKSLKTIASQKAAIENYNQLKE-DYNTL----------KRELSDRDDEVKRLREDIAKENELRTKAEEEA 81 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH-HHHHH----------HTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----------HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777777777877777777777766663 33334 22345677788888888888888888888888
Q ss_pred HHHHHHHHHHhh
Q 023697 150 NEINGDLAKARD 161 (278)
Q Consensus 150 q~LekDL~~~~~ 161 (278)
..|++||.++.+
T Consensus 82 ~~ie~ElEeLTa 93 (154)
T 2ocy_A 82 DKLNKEVEDLTA 93 (154)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888888663
No 21
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=95.54 E-value=0.26 Score=39.34 Aligned_cols=72 Identities=13% Similarity=0.241 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Q 023697 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNR 194 (278)
Q Consensus 123 ~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~ 194 (278)
-++.+|-+.+.-+.+..+.-.-+..-|..|...|.+-.+- -+++.+|+.||+.|.++|+.+.+.+|..++.+
T Consensus 29 lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 29 LLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445555555555555555555555566666666665544 45688888888888888887776655544443
No 22
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=95.42 E-value=0.085 Score=39.94 Aligned_cols=81 Identities=15% Similarity=0.297 Sum_probs=58.4
Q ss_pred HHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 023697 86 LRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKD 165 (278)
Q Consensus 86 L~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~k 165 (278)
|+-|..++..+..++ .+++.+ ++.++..+...+...+.-...|+.+..++..|.+|+....- .|
T Consensus 2 i~eLr~qi~~l~~e~-----------~~l~~e---~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l--~r 65 (86)
T 3swk_A 2 MRELRRQVDQLTNDK-----------ARVEVE---RDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASL--AR 65 (86)
T ss_dssp CHHHHHHHHHHHHHH-----------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH--HH
T ss_pred HHHHHHHHHHHHhhH-----------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH--HH
Confidence 445666666666665 366666 67788888889999999999999999999999999877541 11
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 023697 166 MAAIKAEIETERQEIHKG 183 (278)
Q Consensus 166 l~~LkaEIe~LrqEl~~~ 183 (278)
..|...|++|+.||.=+
T Consensus 66 -~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 66 -LDLERKVESLQEEIAFL 82 (86)
T ss_dssp -HHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHH
Confidence 45666666666665433
No 23
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=95.15 E-value=0.64 Score=38.04 Aligned_cols=56 Identities=11% Similarity=0.149 Sum_probs=27.8
Q ss_pred CcccccCCccCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHH
Q 023697 16 SQFTMSGRRVLREPPLSTRALPPQHSPSLHHLEDRIAIQHSDIQSLLQD--NQRLAATHVALKQELSLA 82 (278)
Q Consensus 16 ~svTleGD~ydpeG~LsGGs~p~~~~~l~~~Le~~L~~q~~eIq~ll~d--nqrla~~~~~L~qEL~la 82 (278)
=+|++.|..|--.|+ ++ ..++. .+-. -....|..+-.. +..+.....++=--|+++
T Consensus 10 V~V~I~Gk~Y~i~g~---e~---ee~L~--~vA~---~vd~km~ei~~~~~~~~l~~~r~aVLaALNia 67 (138)
T 3hnw_A 10 AEVILGGKVIKLGGY---ES---EEYLQ--RVAS---YINNKITEFNKEESYRRMSAELRTDMMYLNIA 67 (138)
T ss_dssp EEEEETTEEEEECSC---SC---HHHHH--HHHH---HHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHH
T ss_pred eEEEECCEEEEecCC---Cc---HHHHH--HHHH---HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHH
Confidence 367888888875553 22 11222 2222 222234444422 555666665555555555
No 24
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=95.09 E-value=0.17 Score=37.47 Aligned_cols=68 Identities=19% Similarity=0.418 Sum_probs=46.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 023697 56 SDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADI 135 (278)
Q Consensus 56 ~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei 135 (278)
.+++.++.+|..|..++ +.|+..+.+ | |.+++++--|-..++.|+
T Consensus 9 kevEnLi~EN~eLl~TK----NaLnvvk~D---------------------L----------I~rvdELt~E~e~l~~El 53 (77)
T 2w83_C 9 REVENLILENTQLLETK----NALNIVKND---------------------L----------IAKVDELTCEKDVLQGEL 53 (77)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHH---------------------H----------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHH---------------------H----------HHHHHHHHhHHHHHHHHH
Confidence 47888999999888877 666776665 3 666778888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023697 136 EKLCVIKQEMIKDLNEINGDLAK 158 (278)
Q Consensus 136 ~~l~~~rqeL~~evq~LekDL~~ 158 (278)
..+...+..+..++..++.|+.+
T Consensus 54 ~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 54 EAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888888888888888877765
No 25
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.04 E-value=1.1 Score=36.01 Aligned_cols=97 Identities=14% Similarity=0.204 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHH-----------HHHHHHHhhhhhhhh
Q 023697 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIE-----------TERQEIHKGRAAIEC 189 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe-----------~LrqEl~~~raa~e~ 189 (278)
+..+..++.+++..+.+....+++|..+...+..+.+++....+...++-++.+ .|-..|..+...++.
T Consensus 15 ~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rlee 94 (129)
T 2fxo_A 15 MASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLED 94 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666666666666665543333333333333 333445555566666
Q ss_pred hhhhchhhHHHHHHHHHhHHHHHHHHHH
Q 023697 190 EKKNRASNHEQREIMEKNIISVAQQIER 217 (278)
Q Consensus 190 ekk~~~e~~eq~q~meknl~~m~~e~ek 217 (278)
+...+.++....+-|+..+-.+-..++-
T Consensus 95 eee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 95 EEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666665555444444443
No 26
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=95.01 E-value=0.72 Score=36.22 Aligned_cols=84 Identities=17% Similarity=0.234 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchh
Q 023697 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAK-ARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRAS 196 (278)
Q Consensus 118 lr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~-~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e 196 (278)
||.+.++-+.|..++....++...+++|..++..++.+-.. +.....++..|+.+|..=+.|+.++..+++--......
T Consensus 7 LRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~ 86 (107)
T 2no2_A 7 LRKNAEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEAN 86 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999998744443 23337778888888888777887766655554444444
Q ss_pred hHHHH
Q 023697 197 NHEQR 201 (278)
Q Consensus 197 ~~eq~ 201 (278)
+..+.
T Consensus 87 l~~~~ 91 (107)
T 2no2_A 87 WAAEF 91 (107)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 27
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=94.78 E-value=0.4 Score=45.56 Aligned_cols=70 Identities=13% Similarity=0.231 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 023697 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEK 191 (278)
Q Consensus 122 e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~raa~e~ek 191 (278)
..|.++|..++.-..++.+.-..+.--|-.|..-|..-.+. .+++.+|+.||..+.++|+.+++.|+..|
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 400 HLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444555555544444444444444444444444333333 45788888888888888888888887654
No 28
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=94.74 E-value=0.96 Score=42.90 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023697 70 ATHVALKQELSLAEQELRHLSSVAAS 95 (278)
Q Consensus 70 ~~~~~L~qEL~laqhEL~~l~~~i~~ 95 (278)
.....|||+|..++..+..++.+..+
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAAT 422 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhh
Confidence 34445666666666665555554443
No 29
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=94.41 E-value=0.91 Score=35.85 Aligned_cols=47 Identities=13% Similarity=0.256 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023697 116 AELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE 162 (278)
Q Consensus 116 aelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d 162 (278)
+++..+.-+++.+.--+.|...-.+.|..+..+++.|..++..++..
T Consensus 59 ~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 59 IVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555555555544443
No 30
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=94.09 E-value=0.52 Score=46.44 Aligned_cols=93 Identities=12% Similarity=0.219 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHH-hhhhhhhhhhhhchhhHHHH
Q 023697 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIH-KGRAAIECEKKNRASNHEQR 201 (278)
Q Consensus 123 ~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~-~~raa~e~ekk~~~e~~eq~ 201 (278)
.++.-|..++..+.++...+++...-+..+...|.+ ++.... +.+....|+. .+|..|.|-|..=..++.++
T Consensus 61 DltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~------rq~q~~-dNdNtynE~S~ELRRrIqyLKekVdnQlsnI 133 (562)
T 3ghg_A 61 DFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRG------DFSSAN-NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHI 133 (562)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSS------HHHHHH-HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH------HHHhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555544444444434333333322 111111 3333444444 55555555555556666777
Q ss_pred HHHHHhHHHHHHHHHHHHHHH
Q 023697 202 EIMEKNIISVAQQIERLQAEL 222 (278)
Q Consensus 202 q~meknl~~m~~e~eklrael 222 (278)
+++++||-....+|.||.-+|
T Consensus 134 rvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 134 QLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777776666
No 31
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=94.04 E-value=0.42 Score=37.80 Aligned_cols=84 Identities=10% Similarity=0.232 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHH
Q 023697 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQ 200 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq 200 (278)
++.++..|..+..-+......+.+|..++.+...++ ..|.-|++++.--+.+|+-|...+-.+-+.
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~l--------------E~I~vLkaQv~IY~~DF~aERadREkl~~e 91 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM--------------ETVPVLKAQADIYKADFQAERHAREKLVEK 91 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHccchhhHHHHHhH
Confidence 445566666666666665555555555555544444 235555555555667777777777777666
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 023697 201 REIMEKNIISVAQQIERL 218 (278)
Q Consensus 201 ~q~meknl~~m~~e~ekl 218 (278)
...++..+-.+-+++.+|
T Consensus 92 Ke~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 92 KEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 666666666666655543
No 32
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=94.00 E-value=1.2 Score=42.34 Aligned_cols=28 Identities=4% Similarity=0.223 Sum_probs=20.9
Q ss_pred hccHHHHHHHHHHHHHHHHhhhhhhhhh
Q 023697 163 SKDMAAIKAEIETERQEIHKGRAAIECE 190 (278)
Q Consensus 163 ~~kl~~LkaEIe~LrqEl~~~raa~e~e 190 (278)
...|..|+.-|+.++.+|+|++.+|++=
T Consensus 133 ~~~ir~Lq~~l~~q~~kiqRLE~~Id~c 160 (390)
T 1deq_A 133 VQRINLLQKNVRDQLVDMKRLEVDIDIK 160 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577778888888888888888777653
No 33
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=93.84 E-value=1.1 Score=35.77 Aligned_cols=77 Identities=9% Similarity=0.164 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHH
Q 023697 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHE 199 (278)
Q Consensus 123 ~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~e 199 (278)
..|.||..++..|+.|....+.+......|+..|.+.... ...+..+...|..|..+|.++|..++---..+.+++.
T Consensus 33 ~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Lln 110 (129)
T 3tnu_B 33 NTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMN 110 (129)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3456666667777777777777777777777777776666 5666666777777777777766666544444444443
No 34
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=93.75 E-value=0.93 Score=35.09 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 126 AELDRVRADIEKLCVIKQEMIKDLNEINGDLAK 158 (278)
Q Consensus 126 ~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~ 158 (278)
+++..++.++..|.........++..|..++.+
T Consensus 5 ~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~e 37 (97)
T 2eqb_B 5 SNYNQLKEDYNTLKRELSDRDDEVKRLREDIAK 37 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444444444455555555555444
No 35
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=93.33 E-value=2.5 Score=33.76 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAK 158 (278)
Q Consensus 127 El~qlr~ei~~l~~~rqeL~~evq~LekDL~~ 158 (278)
.+.........|.+.++.|..+|..|.++|.+
T Consensus 91 rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 91 RLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444433
No 36
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=93.19 E-value=0.6 Score=34.96 Aligned_cols=48 Identities=13% Similarity=0.322 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh
Q 023697 113 KLDAELRVIESMHAELDRVRADIEKLCVI-------KQEMIKDLNEINGDLAKAR 160 (278)
Q Consensus 113 kleaelr~~e~lk~El~qlr~ei~~l~~~-------rqeL~~evq~LekDL~~~~ 160 (278)
-|++||++-..+..||.+++.+...+... .++|..+++.+.++|.+++
T Consensus 18 ALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 18 ALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777776666655554443 3444444444444444433
No 37
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=93.05 E-value=1 Score=36.17 Aligned_cols=77 Identities=14% Similarity=0.229 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHH
Q 023697 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHE 199 (278)
Q Consensus 123 ~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~e 199 (278)
..+.||..++..|+.|....+.+......|+..|.+.... ...+..+...|..|..++.++|..++---.-+.+++.
T Consensus 35 ~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~ 112 (131)
T 3tnu_A 35 SGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLD 112 (131)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666777777666665 5566666666666666666666666544444444443
No 38
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=92.81 E-value=3.1 Score=33.31 Aligned_cols=16 Identities=6% Similarity=0.287 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 023697 143 QEMIKDLNEINGDLAK 158 (278)
Q Consensus 143 qeL~~evq~LekDL~~ 158 (278)
..|..+++.+..||.+
T Consensus 87 ~~lE~eL~~~r~em~~ 102 (131)
T 3tnu_A 87 GSVEEQLAQLRCEMEQ 102 (131)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 39
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=92.77 E-value=3.1 Score=33.18 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023697 70 ATHVALKQELSLAEQELRHLSSVAASV 96 (278)
Q Consensus 70 ~~~~~L~qEL~laqhEL~~l~~~i~~~ 96 (278)
..+.-|+++|..++.-|+..+....+-
T Consensus 25 N~T~lLq~qLTqAQe~l~~~eaQAaTC 51 (121)
T 3mq7_A 25 NVTHLLQQELTEAQKGFQDVEAQAATA 51 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567778888887777766555543
No 40
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=92.73 E-value=3.1 Score=33.16 Aligned_cols=14 Identities=21% Similarity=0.442 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 023697 145 MIKDLNEINGDLAK 158 (278)
Q Consensus 145 L~~evq~LekDL~~ 158 (278)
|..+++.+..||.+
T Consensus 87 lE~eL~~~r~e~~~ 100 (129)
T 3tnu_B 87 LEEALQKAKQDMAR 100 (129)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHH
Confidence 33333333333333
No 41
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=92.65 E-value=3.7 Score=38.68 Aligned_cols=129 Identities=16% Similarity=0.233 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHh---HHHHHHHHHHHhhhhHHHHHHHH
Q 023697 46 HLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAE---RDAEVRELYEKSLKLDAELRVIE 122 (278)
Q Consensus 46 ~Le~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae---~e~~~r~l~~k~~kleaelr~~e 122 (278)
.+-++|...+...+....+.+++...+..+.|||+.+..-+.-....+.-.+-. +|..+.+-+++-. .+
T Consensus 123 ~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~e~~~k~~a~~af~~~~~~f~~q~~~~e~~~~~~~~~~~--------~~ 194 (373)
T 3hhm_B 123 AVGKKLHEYNTQFQEKSREYDRLYEEYTRTSQEIQMKRTAIEAFNETIKIFEEQCQTQERYSKEYIEKFK--------RE 194 (373)
T ss_dssp GGGC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--------TT
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh--------hh
Confidence 455566677777888888899999999999999998887777665555433322 1222223322211 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhh
Q 023697 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRA 185 (278)
Q Consensus 123 ~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~ra 185 (278)
+-..|+..+..-.+.|+...+++....+.|+++|.... .....+..++.+|+=++..++.
T Consensus 195 ~~~~e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~lkp~l~ql~k 254 (373)
T 3hhm_B 195 GNEKEIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQA---AEYREIDKRMNSIKPDLIQLRK 254 (373)
T ss_dssp TCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccChHHHHHHH
Confidence 12235555555555666666666666666666665533 2334556666666666655554
No 42
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=92.64 E-value=1.7 Score=33.46 Aligned_cols=84 Identities=17% Similarity=0.253 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 74 ALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEIN 153 (278)
Q Consensus 74 ~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~Le 153 (278)
.|...|..+..-|...+..|.. |-+.+.++++++..+.-+++.+.--+.|...-.+.|..+..+.+.|.
T Consensus 6 ~L~~~L~~aEeaL~~kq~~id~-----------lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~ 74 (94)
T 3jsv_C 6 DLRQQLQQAEEALVAKQELIDK-----------LKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQ 74 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3455555555555554444443 33444566777778888888888888888888888888888887777
Q ss_pred HHHHHHhhhhccHHH
Q 023697 154 GDLAKARDESKDMAA 168 (278)
Q Consensus 154 kDL~~~~~d~~kl~~ 168 (278)
.++..++....+|..
T Consensus 75 ~ql~~lq~q~~~L~~ 89 (94)
T 3jsv_C 75 EQLEQLQREFNKLKV 89 (94)
T ss_dssp HHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHH
Confidence 777776666555543
No 43
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=92.36 E-value=1.3 Score=33.24 Aligned_cols=58 Identities=14% Similarity=0.266 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023697 101 DAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARD 161 (278)
Q Consensus 101 e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~ 161 (278)
|..|...+|.+..|..+ ++++|.+-..|..+.+.+...+..|..+.++|..|...|+.
T Consensus 12 E~KIq~avdtI~lLqmE---ieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~ 69 (81)
T 2jee_A 12 EAKVQQAIDTITLLQME---IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444566666666666 77777777788888888888888888888888888777664
No 44
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=92.27 E-value=1.6 Score=34.53 Aligned_cols=94 Identities=16% Similarity=0.251 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHH
Q 023697 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHE 199 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~e 199 (278)
.+.+..++.+++.++.++...+++|... +.+-..| ..++..|..-+..--+.|..++.+|.--|. +--+
T Consensus 8 ~~~lq~~~~ql~~qL~k~~~~r~~Le~~-------w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~---~vq~ 77 (112)
T 1x79_B 8 VKKLQLMLRQANDQLEKTMKDKQELEDF-------IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKR---DVQE 77 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 4556666777777777777777777666 5555556 778888888888888888888888876554 3455
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHh
Q 023697 200 QREIMEKNIISVAQQIERLQAELAN 224 (278)
Q Consensus 200 q~q~meknl~~m~~e~eklrael~n 224 (278)
|++.....-=.+..|+.+|.+|=.+
T Consensus 78 qL~~Lt~~Re~V~~eL~rLQ~eNd~ 102 (112)
T 1x79_B 78 QMAVLMQSREQVSEELVRLQKDNDS 102 (112)
T ss_dssp HHHHHHHHHHHHHTC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Confidence 6666666666677777777766433
No 45
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=92.26 E-value=4.3 Score=39.72 Aligned_cols=101 Identities=21% Similarity=0.220 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 73 VALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEI 152 (278)
Q Consensus 73 ~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~L 152 (278)
..-|-+|+.-|.||-+.+......+++-|.-+.++-.+.+.++|| ++++++.=.+..++-+. .......++...
T Consensus 5 a~yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~ae---NeaikkrNa~aka~Ye~---~l~kY~~dlakY 78 (497)
T 3iox_A 5 ADYQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAE---NTAIKKRNADAKADYEA---KLAKYQADLAKY 78 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH---HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 345678999999999999999999988888888886666667776 55555443333333222 122233333444
Q ss_pred HHHHHHHhhhhccHHHHHHHHHHHHHHHHh
Q 023697 153 NGDLAKARDESKDMAAIKAEIETERQEIHK 182 (278)
Q Consensus 153 ekDL~~~~~d~~kl~~LkaEIe~LrqEl~~ 182 (278)
.+|+.+++ .++.+-..++....+++..
T Consensus 79 ~~~~AeY~---~kl~aYe~~~~~~~k~lae 105 (497)
T 3iox_A 79 QKDLADYP---VKLKAYEDEQTSIKAALAE 105 (497)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 44444433 3555555555555555553
No 46
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=92.22 E-value=0.57 Score=37.59 Aligned_cols=51 Identities=24% Similarity=0.497 Sum_probs=27.7
Q ss_pred hHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023697 97 KAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (278)
Q Consensus 97 ~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~ 160 (278)
+.++|.+|..| -+.++.++.++..+..+.+. ...+|...|..|+.||..-+
T Consensus 10 ~d~rD~~Ie~L----------kreie~lk~ele~l~~E~q~---~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 10 KDEKDHLIERL----------YREISGLKAQLENMKTESQR---VVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp CCTHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555 45555555555555443333 34455666666666666544
No 47
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=92.17 E-value=1 Score=37.23 Aligned_cols=62 Identities=16% Similarity=0.212 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhh
Q 023697 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAA 186 (278)
Q Consensus 122 e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa 186 (278)
..++.++...++....+.+..+.+.+++..++.++..+..+.+-..+.+ .+|+.+|.-.|.+
T Consensus 69 ~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIseASR---qgLrRDLeASReA 130 (146)
T 2xnx_M 69 EAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASR---QSLRRDLDASREA 130 (146)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC--------------------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHH
Confidence 3344444444444444444444555555555555555543333222222 4444444444444
No 48
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=91.75 E-value=0.74 Score=35.51 Aligned_cols=43 Identities=5% Similarity=0.250 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023697 120 VIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE 162 (278)
Q Consensus 120 ~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d 162 (278)
.++.++.++.+++.++.+|...+.++..++..+.+.+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~ 46 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKA 46 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3566677888888899999999999999999999999998764
No 49
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=91.15 E-value=2.6 Score=33.72 Aligned_cols=38 Identities=13% Similarity=0.309 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAK 158 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~ 158 (278)
+..|+..|.+|++++..-...+++...+...|..++..
T Consensus 42 v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~ 79 (120)
T 3i00_A 42 VLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDE 79 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444443
No 50
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=91.07 E-value=0.98 Score=34.76 Aligned_cols=51 Identities=12% Similarity=0.285 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHH
Q 023697 171 AEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAE 221 (278)
Q Consensus 171 aEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrae 221 (278)
..|.-|++++.--+.+|.-|+..+-.+-+..+.+...+-.+-+++.+|.+|
T Consensus 40 E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L~~~ 90 (94)
T 3jsv_C 40 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLKVG 90 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444445555555555555555555555555555555555555543
No 51
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=90.82 E-value=1.2 Score=34.61 Aligned_cols=61 Identities=13% Similarity=0.263 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhhh----hccH------------HHHHHHHHHHHHHHHhhhhhh
Q 023697 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAK--ARDE----SKDM------------AAIKAEIETERQEIHKGRAAI 187 (278)
Q Consensus 127 El~qlr~ei~~l~~~rqeL~~evq~LekDL~~--~~~d----~~kl------------~~LkaEIe~LrqEl~~~raa~ 187 (278)
++..++.+|..|...+..|..++..|+-.|.. ++.| .-|+ ...+.+|+.|+.|+.++|..+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555566666666666555 1222 1222 245566666666666666543
No 52
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=90.69 E-value=8.3 Score=37.48 Aligned_cols=67 Identities=15% Similarity=0.217 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hccHHHHHHHHHHHHHHHHhhhhhh
Q 023697 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE--SKDMAAIKAEIETERQEIHKGRAAI 187 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d--~~kl~~LkaEIe~LrqEl~~~raa~ 187 (278)
+..|+..+.+.+..+..+....+++..+++.+..-+++.-.. .+.|..|+..++.++..|+++...+
T Consensus 123 i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~L~~~~~~l~~ki~~l~~~~ 191 (464)
T 1m1j_B 123 VNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAI 191 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666666666666665554332 5677778888888877777776655
No 53
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=90.61 E-value=6.1 Score=32.28 Aligned_cols=100 Identities=19% Similarity=0.294 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 72 HVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNE 151 (278)
Q Consensus 72 ~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~ 151 (278)
...|+-|+..++..+......+..+...+-.|.-++ -|...|||||+.-+.|-..| .+.....|++|..+--.
T Consensus 62 i~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQSlDi-RKLrELEADLKEKDsMVe~L------T~TiG~LrKELEdEklK 134 (167)
T 4gkw_A 62 IGKLRAELGTAQRNLEKADQLLKRNSQQQNQQSLDM-RKLGELEADLKEKDSMVESL------TETIGILRKELENEKLK 134 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTHHHHHTHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhhhhH-HHHHHHHhHHhhhhHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 344555555556666665555665655554444433 34444555554444332111 11222233333333322
Q ss_pred HHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhh
Q 023697 152 INGDLAKARDESKDMAAIKAEIETERQEIHKGRA 185 (278)
Q Consensus 152 LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~ra 185 (278)
+..-|.. ...|+-|-+.+++.|..-|+
T Consensus 135 ~~E~MdS-------FE~LkvENE~vkerl~mYR~ 161 (167)
T 4gkw_A 135 AAENMDS-------FEKLSMENENLKEKIAHYRA 161 (167)
T ss_dssp HHHHHHH-------HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHH-------HHHHhhhhHhHHHHHHHHHH
Confidence 2222222 23456666666666665554
No 54
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=90.59 E-value=6.1 Score=32.27 Aligned_cols=97 Identities=18% Similarity=0.215 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHH-------HHHHHHHHhhhhhhhhh
Q 023697 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEI-------ETERQEIHKGRAAIECE 190 (278)
Q Consensus 118 lr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEI-------e~LrqEl~~~raa~e~e 190 (278)
-+++..-.+||..+|++...++...+.....+.+-...-+.-.-|.-||.+|.+.+ ++|.+-|--+|..+|.|
T Consensus 52 qKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQSlDiRKLrELEADLKEKDsMVe~LT~TiG~LrKELEdE 131 (167)
T 4gkw_A 52 QKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQSLDMRKLGELEADLKEKDSMVESLTETIGILRKELENE 131 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhhhhHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 45566667788888888777666655555544444333333334455666666655 66777777888888888
Q ss_pred hhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHhh
Q 023697 191 KKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKR 228 (278)
Q Consensus 191 kk~~~e~~eq~q~meknl~~m~~e~eklrael~n~~~r 228 (278)
|-.-.|.+.. .|||.-|-.+...|
T Consensus 132 klK~~E~MdS--------------FE~LkvENE~vker 155 (167)
T 4gkw_A 132 KLKAAENMDS--------------FEKLSMENENLKEK 155 (167)
T ss_dssp HHHHHHHHHH--------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--------------HHHHhhhhHhHHHH
Confidence 7654444332 35666665555544
No 55
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=90.27 E-value=3.4 Score=34.35 Aligned_cols=80 Identities=11% Similarity=0.129 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHH
Q 023697 134 DIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQ 213 (278)
Q Consensus 134 ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~ 213 (278)
.|..|...+..+..+|..++.+|.. ..+-+..|..|+..|+-++..+...+.--++-|.++++.. |-.|++
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~e---K~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW------M~rk~q 139 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIAL---KNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW------LKKTEK 139 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH
Confidence 3334444444444444445544444 2334556778888888888888877777777777777654 445777
Q ss_pred HHHHHHHHH
Q 023697 214 QIERLQAEL 222 (278)
Q Consensus 214 e~eklrael 222 (278)
|.++|-.+.
T Consensus 140 EAe~MN~an 148 (152)
T 3a7p_A 140 ETEAMNSEI 148 (152)
T ss_dssp HHHHC----
T ss_pred HHHHHHHhc
Confidence 888775443
No 56
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=90.17 E-value=2.5 Score=31.61 Aligned_cols=66 Identities=14% Similarity=0.139 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHhhHHHH
Q 023697 167 AAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKRARAA 232 (278)
Q Consensus 167 ~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael~n~~~r~~a~ 232 (278)
..|.+.|+.+=..|.-++-.|+..|-.|..+..+.+....+-....+|.++|+.|..+-..|=++.
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555666666666667777777777777777777778889999999998888877654
No 57
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=89.96 E-value=9.5 Score=33.46 Aligned_cols=19 Identities=5% Similarity=0.004 Sum_probs=11.5
Q ss_pred hhhHHHHHHHHHhHHHHHH
Q 023697 195 ASNHEQREIMEKNIISVAQ 213 (278)
Q Consensus 195 ~e~~eq~q~meknl~~m~~ 213 (278)
...++++|.||...+..-+
T Consensus 208 p~~~~~lQ~lee~r~~~lk 226 (301)
T 2efk_A 208 PQIFDKLQDMDERRATRLG 226 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456777777766554443
No 58
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=89.68 E-value=8.5 Score=32.49 Aligned_cols=55 Identities=15% Similarity=0.225 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhH
Q 023697 46 HLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAER 100 (278)
Q Consensus 46 ~Le~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~ 100 (278)
.|+.+|......++..---..|+-..+..+...+....+.++-|+..+..+...+
T Consensus 10 ~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k 64 (168)
T 3o0z_A 10 QLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSK 64 (168)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555554444444444455555555555444444444444444444444444
No 59
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=89.52 E-value=6.1 Score=30.61 Aligned_cols=65 Identities=11% Similarity=0.299 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHh
Q 023697 118 LRVIESMHAELDRVRADIEKLCVIKQEMIK---DLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHK 182 (278)
Q Consensus 118 lr~~e~lk~El~qlr~ei~~l~~~rqeL~~---evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~ 182 (278)
+..++.++.+|..++..+.++......... ....+.++|...-.+ ......++..|+.|.++..+
T Consensus 11 ~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~ 79 (127)
T 1ez3_A 11 FEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQ 79 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666665554332 113455555555555 44455666666666665543
No 60
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=89.48 E-value=2 Score=36.44 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=20.4
Q ss_pred hhhccHHHHHHHHHHHHHHHHhhhhhh
Q 023697 161 DESKDMAAIKAEIETERQEIHKGRAAI 187 (278)
Q Consensus 161 ~d~~kl~~LkaEIe~LrqEl~~~raa~ 187 (278)
-|..++.+|-.||..|+.++...|..+
T Consensus 110 ~DeakI~aL~~Ei~~Lr~qL~~~R~k~ 136 (175)
T 3lay_A 110 PDTAKINAVAKEMESLGQKLDEQRVKR 136 (175)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346889999999999888877655443
No 61
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=89.28 E-value=5.8 Score=32.24 Aligned_cols=12 Identities=8% Similarity=-0.086 Sum_probs=7.0
Q ss_pred cccCceEEEeec
Q 023697 2 NIYGNSLHTTLH 13 (278)
Q Consensus 2 ~ifG~tlivtfh 13 (278)
+|||..+.|.++
T Consensus 13 ~I~Gk~Y~i~g~ 24 (138)
T 3hnw_A 13 ILGGKVIKLGGY 24 (138)
T ss_dssp EETTEEEEECSC
T ss_pred EECCEEEEecCC
Confidence 466666665553
No 62
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=89.00 E-value=3.5 Score=30.33 Aligned_cols=29 Identities=14% Similarity=0.337 Sum_probs=16.3
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 023697 164 KDMAAIKAEIETERQEIHKGRAAIECEKK 192 (278)
Q Consensus 164 ~kl~~LkaEIe~LrqEl~~~raa~e~ekk 192 (278)
.|+..|..+++.....+..+-..++...|
T Consensus 48 kKiq~lE~eld~~ee~l~~a~~kLeeaek 76 (81)
T 1ic2_A 48 KKLKGTEDELDKYSESLKDAQEKLELADK 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666655555555444
No 63
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=88.83 E-value=3.7 Score=31.20 Aligned_cols=34 Identities=15% Similarity=0.334 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 125 HAELDRVRADIEKLCVIKQEMIKDLNEINGDLAK 158 (278)
Q Consensus 125 k~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~ 158 (278)
..+|..+|..|..+...+..|..++..+..|+.+
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~ 88 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMR 88 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444333333
No 64
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=88.70 E-value=0.9 Score=31.51 Aligned_cols=39 Identities=23% Similarity=0.297 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHH
Q 023697 166 MAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIM 204 (278)
Q Consensus 166 l~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~m 204 (278)
+=+|+.++..|++|..++...+|.|.+++-++-.=+.-|
T Consensus 12 VYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 12 VYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999986654444433
No 65
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=88.68 E-value=2.2 Score=35.14 Aligned_cols=67 Identities=15% Similarity=0.257 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchh
Q 023697 130 RVRADIEKLCVIKQEMIKDLNEINGDLAKARDE--SKDMAAIKAEIETERQEIHKGRAAIECEKKNRAS 196 (278)
Q Consensus 130 qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d--~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e 196 (278)
.|..+.+.|.....+|+.-|..|.+|+..-... -.++..+..+|+.++.+|..+..-|.-||-.--.
T Consensus 18 kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKK 86 (141)
T 3okq_A 18 ELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKK 86 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHH
Confidence 356677888888899999999999999887766 7889999999999999999999999999865443
No 66
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=88.45 E-value=6.9 Score=29.84 Aligned_cols=27 Identities=7% Similarity=0.211 Sum_probs=14.1
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 023697 165 DMAAIKAEIETERQEIHKGRAAIECEK 191 (278)
Q Consensus 165 kl~~LkaEIe~LrqEl~~~raa~e~ek 191 (278)
++-.+..+++++...+......++-.+
T Consensus 68 ql~e~~dE~~Sl~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 68 QQLELDDELKSVENQMRYAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555555555555555555544443
No 67
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=88.24 E-value=2.3 Score=31.81 Aligned_cols=54 Identities=15% Similarity=0.268 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HhhhhccHHHHHHHHHHHHHHHHhhhhhhh
Q 023697 135 IEKLCVIKQEMIKDLNEINGDLAK---ARDESKDMAAIKAEIETERQEIHKGRAAIE 188 (278)
Q Consensus 135 i~~l~~~rqeL~~evq~LekDL~~---~~~d~~kl~~LkaEIe~LrqEl~~~raa~e 188 (278)
+..|-.....|..++..|+..|.. |..|..++..|.++++.+.++|..+-..-+
T Consensus 24 le~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWe 80 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWE 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444566667777777775 345688899999999999999988766554
No 68
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=88.22 E-value=7.7 Score=32.29 Aligned_cols=13 Identities=23% Similarity=0.355 Sum_probs=6.9
Q ss_pred HHHHHHHHHHhHH
Q 023697 214 QIERLQAELANAE 226 (278)
Q Consensus 214 e~eklrael~n~~ 226 (278)
.+++|+..+..++
T Consensus 116 r~~~L~~ql~e~~ 128 (154)
T 2ocy_A 116 LNKRLTEQLREKD 128 (154)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3455556665544
No 69
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=88.22 E-value=9.7 Score=36.36 Aligned_cols=44 Identities=9% Similarity=0.064 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 46 HLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHL 89 (278)
Q Consensus 46 ~Le~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l 89 (278)
.|.+-|..++..|..-|.+.+.+..+...+..+.......|+..
T Consensus 24 ~i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 24 GIADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555555544444444444444444444444
No 70
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=88.14 E-value=5.3 Score=29.94 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023697 112 LKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE 162 (278)
Q Consensus 112 ~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d 162 (278)
.+.|.+ +..+..++..++..+.+....+++|..+...+..+.+++...
T Consensus 10 ~~~eeE---m~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 10 ARQEEE---MKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp CHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555 445677888888888888888888888888888877776544
No 71
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=87.98 E-value=4.5 Score=33.18 Aligned_cols=104 Identities=11% Similarity=0.192 Sum_probs=75.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc--HHHHHHHHHHHHHHHHh
Q 023697 105 RELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKD--MAAIKAEIETERQEIHK 182 (278)
Q Consensus 105 r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~k--l~~LkaEIe~LrqEl~~ 182 (278)
..++|++-.|...|+..++++ ++..+...+.. ...-+.|-.+.+.+.+++..++.-++. ..+...++..+..+|..
T Consensus 7 ~~I~d~A~eL~~aI~eseeyk-~yk~A~~~i~~-D~eaq~li~eF~~~Q~~~~~~q~~Gk~~~~~e~~~el~~l~~~l~~ 84 (151)
T 2pih_A 7 KDIVQQARNLAKMISETEEVD-FFKRAEAQINE-NDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQEELEE 84 (151)
T ss_dssp HHHHHHHHHHHHHHTTBHHHH-HHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHH-HHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHc
Confidence 458899999999999998886 77777777765 445567777788888888888876653 57888888888888887
Q ss_pred hhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 023697 183 GRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAEL 222 (278)
Q Consensus 183 ~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael 222 (278)
-....+| ..-|..|-.|-.+|-+.=++-
T Consensus 85 np~V~~y------------~~Ae~~l~~LL~~I~~iI~~~ 112 (151)
T 2pih_A 85 IPVIQEF------------RDSQMEVNDLLQLVAHTISNQ 112 (151)
T ss_dssp SHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
Confidence 6655555 334555666666666554433
No 72
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=87.73 E-value=8.6 Score=36.43 Aligned_cols=41 Identities=17% Similarity=0.334 Sum_probs=26.1
Q ss_pred hhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 023697 182 KGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAEL 222 (278)
Q Consensus 182 ~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael 222 (278)
.+|..|+|-|+.=.+++-++++|+.||...-.+|.||.-.|
T Consensus 117 eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 117 DLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666667777777666666666666666
No 73
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=87.69 E-value=4.6 Score=30.69 Aligned_cols=51 Identities=14% Similarity=0.266 Sum_probs=25.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023697 107 LYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE 162 (278)
Q Consensus 107 l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d 162 (278)
.+||..-||.+ +..+..+|..++.. .-.....-+...|..|.+.|.....+
T Consensus 21 yIdKVR~LEqq---N~~Le~~i~~l~~~--~~~~~~~~ye~~i~~Lr~~i~~~~~e 71 (93)
T 3s4r_A 21 LIDKVRFLEQQ---NKILLAELEQLKGQ--GKSRLGDLYEEEMRELRRQVDQLTND 71 (93)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHhhc--cCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666 55555555555432 11223333455555555555555544
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.64 E-value=16 Score=34.50 Aligned_cols=30 Identities=7% Similarity=-0.062 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhchhhHHHH
Q 023697 172 EIETERQEIHKGRAAIECEKKNRASNHEQR 201 (278)
Q Consensus 172 EIe~LrqEl~~~raa~e~ekk~~~e~~eq~ 201 (278)
|-+.++.++.....+++.=+-.+.+.+.+.
T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (487)
T 3oja_A 450 ENARLKKLNGEADLALASANATLQELVVRE 479 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhhhhhhHhcccHHHHHHHHH
Confidence 444444444444444444444444444443
No 75
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=87.36 E-value=4.3 Score=30.30 Aligned_cols=20 Identities=5% Similarity=0.064 Sum_probs=9.5
Q ss_pred ccHHHHHHHHHHHHHHHHhh
Q 023697 164 KDMAAIKAEIETERQEIHKG 183 (278)
Q Consensus 164 ~kl~~LkaEIe~LrqEl~~~ 183 (278)
++-.+|..||+.++.++..+
T Consensus 52 ~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 52 ARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555554443
No 76
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=87.29 E-value=21 Score=34.67 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=21.5
Q ss_pred hccHHHHHHHHHHHHHHHHhhhhhhh
Q 023697 163 SKDMAAIKAEIETERQEIHKGRAAIE 188 (278)
Q Consensus 163 ~~kl~~LkaEIe~LrqEl~~~raa~e 188 (278)
.+.|..|+.-|+.++.+|+|++.+|.
T Consensus 131 i~~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 131 VNRIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888888888888775
No 77
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=87.24 E-value=7.3 Score=28.80 Aligned_cols=23 Identities=9% Similarity=0.354 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023697 124 MHAELDRVRADIEKLCVIKQEMI 146 (278)
Q Consensus 124 lk~El~qlr~ei~~l~~~rqeL~ 146 (278)
++.+|.+++.++......-++|.
T Consensus 38 lE~eL~~~r~e~~~q~~EYq~Ll 60 (84)
T 1gk4_A 38 LQDEIQNMKEEMARHLREYQDLL 60 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444443333333333
No 78
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=87.01 E-value=8.7 Score=29.42 Aligned_cols=24 Identities=13% Similarity=0.201 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhh
Q 023697 167 AAIKAEIETERQEIHKGRAAIECE 190 (278)
Q Consensus 167 ~~LkaEIe~LrqEl~~~raa~e~e 190 (278)
..|..+++.+...+..+...++..
T Consensus 54 ~~lE~eld~~ee~L~ea~~kLee~ 77 (101)
T 3u1c_A 54 RVTEDSRDQVLEELHKSEDSLLFA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555444444433
No 79
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=86.61 E-value=23 Score=33.90 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=27.1
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhh------------hhhhhhchhhHHHHHHHHHhHHHHHH
Q 023697 165 DMAAIKAEIETERQEIHKGRAAI------------ECEKKNRASNHEQREIMEKNIISVAQ 213 (278)
Q Consensus 165 kl~~LkaEIe~LrqEl~~~raa~------------e~ekk~~~e~~eq~q~meknl~~m~~ 213 (278)
++..++..++..++++..++..| +|+ ..-...++++|.||..-|..-+
T Consensus 186 ~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~y~-~~~~~~~~~lQ~lEeeRi~~lK 245 (486)
T 3haj_A 186 QLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYM-ENMEQVFEQCQQFEEKRLRFFR 245 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555554444433 222 3445667788888877766655
No 80
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=85.88 E-value=24 Score=33.82 Aligned_cols=17 Identities=6% Similarity=0.024 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 023697 166 MAAIKAEIETERQEIHK 182 (278)
Q Consensus 166 l~~LkaEIe~LrqEl~~ 182 (278)
+..+....+.++.++..
T Consensus 287 ~~~l~~~~~~~~~~l~~ 303 (517)
T 4ad8_A 287 LEDVVEFGAQAAEELAG 303 (517)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333344444444433
No 81
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=85.81 E-value=2.6 Score=32.49 Aligned_cols=44 Identities=2% Similarity=0.160 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhh
Q 023697 142 KQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRA 185 (278)
Q Consensus 142 rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~ra 185 (278)
.++|..+|..|++++..+..--++.+-|+.+-.-|..||.....
T Consensus 49 ~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F~~ 92 (96)
T 1t3j_A 49 QKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENFSK 92 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544444455555555545445444433
No 82
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=85.78 E-value=15 Score=30.98 Aligned_cols=50 Identities=12% Similarity=0.212 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023697 45 HHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAA 94 (278)
Q Consensus 45 ~~Le~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~ 94 (278)
..+-.+|...|.+.+....+.+++...+..+.+|++....-+.-....+.
T Consensus 13 e~v~~~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik 62 (170)
T 3l4q_C 13 EAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIK 62 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 45677888888888889999999999999999999888877777666655
No 83
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=85.34 E-value=11 Score=28.80 Aligned_cols=24 Identities=13% Similarity=0.271 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHH
Q 023697 196 SNHEQREIMEKNIISVAQQIERLQ 219 (278)
Q Consensus 196 e~~eq~q~meknl~~m~~e~eklr 219 (278)
+..+.++..+.-|..-...++|||
T Consensus 71 e~~dE~~Sl~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 71 ELDDELKSVENQMRYAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444444444555554
No 84
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=85.24 E-value=12 Score=29.48 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=7.6
Q ss_pred ccHHHHHHHHHHHHHHHHhhhh
Q 023697 164 KDMAAIKAEIETERQEIHKGRA 185 (278)
Q Consensus 164 ~kl~~LkaEIe~LrqEl~~~ra 185 (278)
.+|..|....+.+..+|.++..
T Consensus 77 ~qL~~Lt~~Re~V~~eL~rLQ~ 98 (112)
T 1x79_B 77 EQMAVLMQSREQVSEELVRLQK 98 (112)
T ss_dssp HHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444433
No 85
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=85.02 E-value=15 Score=30.44 Aligned_cols=73 Identities=11% Similarity=0.158 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHH
Q 023697 136 EKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISV 211 (278)
Q Consensus 136 ~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m 211 (278)
.+.......+..+|..|+..+.+.. .+-......+..|..+|.++...+.-+|..+....+.+..+=..|.+|
T Consensus 66 ekasqrEd~yEeqIk~L~~kLKEAE---~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~ 138 (155)
T 2efr_A 66 EKYSQKEDKYEEEIKVLSDKLKEAE---TRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEEL 138 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333344444444544444443322 233333344444444455555555555555544444444433444443
No 86
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=84.86 E-value=12 Score=28.89 Aligned_cols=37 Identities=19% Similarity=0.356 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023697 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (278)
Q Consensus 124 lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~ 160 (278)
+..++..+..++.+-...|.+...+...|+++|.++.
T Consensus 24 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 24 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666767777777777777777766654
No 87
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=84.60 E-value=7.6 Score=31.26 Aligned_cols=70 Identities=19% Similarity=0.307 Sum_probs=41.0
Q ss_pred HHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhh-chhhHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 023697 154 GDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKN-RASNHEQREIMEKNIISVAQQIERLQAELAN 224 (278)
Q Consensus 154 kDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~-~~e~~eq~q~meknl~~m~~e~eklrael~n 224 (278)
.||..-++...+|.+|...|+.|..++..+...+..-... +++- --..+.++.+..--.|.+|.+++|-.
T Consensus 51 sele~k~aeLe~leeL~~ki~eL~~kvA~le~e~~~~e~~~~~~~-~~~e~le~~la~KkAEleKtqa~Ld~ 121 (125)
T 2pms_C 51 SKLDAKKAKLSKLEELSDKIDELDAEIAKLEDQLKAAEENNNVED-YFKEGLEKTIAAKKAELEKTEADLKK 121 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccchH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334445666666666666666666666532222 2333 33677788888877888888888843
No 88
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=84.25 E-value=7.5 Score=28.93 Aligned_cols=8 Identities=25% Similarity=0.576 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 023697 128 LDRVRADI 135 (278)
Q Consensus 128 l~qlr~ei 135 (278)
|.+++.++
T Consensus 44 l~~~r~e~ 51 (86)
T 1x8y_A 44 MAEMRARM 51 (86)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 89
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=83.76 E-value=13 Score=35.50 Aligned_cols=98 Identities=16% Similarity=0.191 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Q 023697 115 DAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNR 194 (278)
Q Consensus 115 eaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~ 194 (278)
..+++.+|.+-.+|..+..++..|....+..-.+-+ . ....-....-...++|..++.++++.+-
T Consensus 37 ~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~Q-------~--~~~d~~e~~tq~skkml~~~~~~e~~~~------ 101 (409)
T 1m1j_C 37 DGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEK-------Q--TLPQSIEQLTQKSKKIIEEIIRYENTIL------ 101 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSST-------T--CCSSCHHHHHHHHHHHHHHHHHTHHHHH------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-------C--CCCCchhhHHHHHHHHHHHHHHHHHHhc------
Confidence 344555666666666666666665555555422100 0 0000012223334444445444433221
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHhh
Q 023697 195 ASNHEQREIMEKNIISVAQQIERLQAELANAEKR 228 (278)
Q Consensus 195 ~e~~eq~q~meknl~~m~~e~eklrael~n~~~r 228 (278)
..-.+++.|+.-|-+....|+.|+..|..-+.+
T Consensus 102 -~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~ 134 (409)
T 1m1j_C 102 -AHENTIQQLTDMHIMNSNKITQLKQKIAQLESH 134 (409)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 122455556666666667777777766655543
No 90
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=83.11 E-value=6.4 Score=28.78 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 128 LDRVRADIEKLCVIKQEMIKDLNEINGDLAKA 159 (278)
Q Consensus 128 l~qlr~ei~~l~~~rqeL~~evq~LekDL~~~ 159 (278)
|.+...-|..+....++...+|+.|..++.+|
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333334444444444444444444444443
No 91
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=81.60 E-value=8.8 Score=30.43 Aligned_cols=44 Identities=25% Similarity=0.382 Sum_probs=31.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 103 EVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDL 149 (278)
Q Consensus 103 ~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~ev 149 (278)
+.|.++++..+.|.| ++.++.++..++..+.......+++..+.
T Consensus 5 e~~~~~~~~~~~e~e---~~~l~~~~~el~~~l~~~~~~~~e~g~~~ 48 (125)
T 1joc_A 5 ERRALLERCLKGEGE---IEKLQTKVLELQRKLDNTTAAVQELGREN 48 (125)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 346788888888888 77778888888877776665555554433
No 92
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=81.57 E-value=21 Score=29.53 Aligned_cols=30 Identities=17% Similarity=0.112 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 119 RVIESMHAELDRVRADIEKLCVIKQEMIKD 148 (278)
Q Consensus 119 r~~e~lk~El~qlr~ei~~l~~~rqeL~~e 148 (278)
+.++.++.|+..++.+...+......|..+
T Consensus 96 K~~e~l~DEl~aLqlq~n~lE~kl~kLq~E 125 (152)
T 3a7p_A 96 KNTERLNAALISGTIENNVLQQKLSDLKKE 125 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666665555555555554443
No 93
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=81.43 E-value=7.9 Score=26.49 Aligned_cols=43 Identities=5% Similarity=0.127 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhh
Q 023697 135 IEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAI 187 (278)
Q Consensus 135 i~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~ 187 (278)
+.+|....+.|..+|..|..|+.. |+.+|...+.|-.|+-.-|
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~a----------l~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANA----------ARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhh
Confidence 334444444444555555444333 3344445555555544433
No 94
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=81.25 E-value=9 Score=26.96 Aligned_cols=47 Identities=13% Similarity=0.298 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccH
Q 023697 120 VIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDM 166 (278)
Q Consensus 120 ~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl 166 (278)
..=++|.-|....+.|+.|...-..|+.++..+.+.++.+++++..|
T Consensus 14 eylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 14 EYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 34456777777888888888888888888888888888888776544
No 95
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=81.10 E-value=2.5 Score=34.53 Aligned_cols=9 Identities=44% Similarity=0.464 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 023697 71 THVALKQEL 79 (278)
Q Consensus 71 ~~~~L~qEL 79 (278)
.+..|..+|
T Consensus 33 ~l~~l~~~l 41 (135)
T 2e7s_A 33 DYNTLKREL 41 (135)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 333333333
No 96
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=80.93 E-value=7.6 Score=26.44 Aligned_cols=42 Identities=26% Similarity=0.286 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 48 EDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHL 89 (278)
Q Consensus 48 e~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l 89 (278)
++++.....++..+-..|.+|+.....-+++|...+.+|..|
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777888888888999999999999999999998888888765
No 97
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=80.67 E-value=17 Score=27.66 Aligned_cols=24 Identities=13% Similarity=0.284 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhh
Q 023697 167 AAIKAEIETERQEIHKGRAAIECE 190 (278)
Q Consensus 167 ~~LkaEIe~LrqEl~~~raa~e~e 190 (278)
..+..+++.+...+..+...++..
T Consensus 54 q~lE~eld~~~e~l~~a~~kLe~~ 77 (101)
T 3u59_A 54 KGTEDEVEKYSESVKEAQEKLEQA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 98
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=80.35 E-value=19 Score=29.61 Aligned_cols=58 Identities=19% Similarity=0.208 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Q 023697 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQ 178 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~Lrq 178 (278)
+..+.+|+..-+.-++-|....+.....+...++.+.+.+.-..++..++.+|++.-+
T Consensus 88 n~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~ 145 (152)
T 4fla_A 88 NGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQ 145 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566666666666677777777777777777788888877778888888888876543
No 99
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=80.12 E-value=9.7 Score=27.79 Aligned_cols=20 Identities=25% Similarity=0.265 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q 023697 168 AIKAEIETERQEIHKGRAAI 187 (278)
Q Consensus 168 ~LkaEIe~LrqEl~~~raa~ 187 (278)
+...+|..|+.+|.+.++.+
T Consensus 51 ekd~eI~~LqseLDKfrSVl 70 (72)
T 3nmd_A 51 QKDELIQMLQNELDKYRSVI 70 (72)
T ss_dssp HHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHhhccC
Confidence 34455556666666666544
No 100
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=80.00 E-value=16 Score=35.59 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEIN 153 (278)
Q Consensus 122 e~lk~El~qlr~ei~~l~~~rqeL~~evq~Le 153 (278)
-++-++..++..+++.|.+.+++++.+|..+.
T Consensus 73 ~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~ 104 (501)
T 1wle_A 73 ISTWQELRQLREQIRSLEEEKEAVTEAVRALV 104 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444555556666666666666665543
No 101
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=79.64 E-value=14 Score=28.12 Aligned_cols=67 Identities=13% Similarity=0.194 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhh
Q 023697 121 IESMHAELDRVRADIEKLCVIKQEMIK-------DLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAI 187 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~-------evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~raa~ 187 (278)
+..++..|..++..|+++......++. .+....+.+.+.=-. ..++..|.++|+.+|.+.-+.|..+
T Consensus 14 v~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl~~rr~~ 88 (93)
T 3t98_B 14 VQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSYRKMF 88 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555444333332 233333444433333 7999999999999999998888754
No 102
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=79.40 E-value=8.9 Score=26.13 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhh
Q 023697 166 MAAIKAEIETERQEIHKGRAAIEC 189 (278)
Q Consensus 166 l~~LkaEIe~LrqEl~~~raa~e~ 189 (278)
+..+..+|+..+.+|..+...++|
T Consensus 35 ~~~~~~~l~~~~~~I~~~k~qi~~ 58 (60)
T 3htk_A 35 INEIFEKLNTIRDEVIKKKNQNEY 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444
No 103
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=78.96 E-value=8 Score=32.07 Aligned_cols=18 Identities=6% Similarity=0.202 Sum_probs=7.4
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 023697 201 REIMEKNIISVAQQIERL 218 (278)
Q Consensus 201 ~q~meknl~~m~~e~ekl 218 (278)
..++-+.|..+..+--++
T Consensus 128 ~~~L~~kf~~~m~~yq~~ 145 (180)
T 1s94_A 128 YSTISRKFVEVMSDYNTT 145 (180)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444443333
No 104
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=78.79 E-value=20 Score=27.39 Aligned_cols=58 Identities=16% Similarity=0.215 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hccHHHHHHHHHHHHHHHHh
Q 023697 125 HAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE----SKDMAAIKAEIETERQEIHK 182 (278)
Q Consensus 125 k~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d----~~kl~~LkaEIe~LrqEl~~ 182 (278)
.....++..+|..|....+-+..++...+..|..++.. .+......+++.+|...|+-
T Consensus 36 e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriql 97 (101)
T 3u1c_A 36 EERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555444444322 23344455566666655553
No 105
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=78.58 E-value=5.6 Score=38.83 Aligned_cols=55 Identities=18% Similarity=0.128 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHH
Q 023697 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEI 180 (278)
Q Consensus 119 r~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl 180 (278)
..+-++-++..++..++++|.+.+..++.+|..+.+ ++....+|++++..|+.+|
T Consensus 33 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~-------~~~~~~~l~~~~~~l~~~i 87 (485)
T 3qne_A 33 DEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFK-------AKEDAKDLIAEKEKLSNEK 87 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CcccHHHHHHHHHHHHHHH
Confidence 334444455555666666666666666666655432 2223344555554444333
No 106
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=78.28 E-value=21 Score=29.26 Aligned_cols=70 Identities=20% Similarity=0.256 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--h--hccHHHHHHHHHHHHHHHHhhhhhhh
Q 023697 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARD--E--SKDMAAIKAEIETERQEIHKGRAAIE 188 (278)
Q Consensus 119 r~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~--d--~~kl~~LkaEIe~LrqEl~~~raa~e 188 (278)
.+++.+..+|..++.-.........+..-++..++.||.+... + .+++..|..+|..+-..++.+....+
T Consensus 52 Er~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~ee 125 (147)
T 2b9c_A 52 EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVE 125 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 3567777777777777777777788888888888888887552 2 56788888888888777777665543
No 107
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=77.88 E-value=9.9 Score=36.60 Aligned_cols=54 Identities=11% Similarity=0.167 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHH
Q 023697 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIH 181 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~ 181 (278)
+-++-++-.++..+++.|.+.++.++.+|..+. .++....+|++++..++.++.
T Consensus 33 ~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~-------~~~~~~~~l~~~~~~~~~~~~ 86 (455)
T 2dq0_A 33 ILKLDTEWRTKLKEINRLRHERNKIAVEIGKRR-------KKGEPVDELLAKSREIVKRIG 86 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TSCCCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cccccHHHHHHHHHHHHHHHH
Confidence 333444444455555555555555555554432 223334445555444444433
No 108
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=77.64 E-value=2.3 Score=34.79 Aligned_cols=11 Identities=27% Similarity=0.534 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 023697 210 SVAQQIERLQA 220 (278)
Q Consensus 210 ~m~~e~eklra 220 (278)
.+-.|+|-|-|
T Consensus 71 ~ie~ElE~LTa 81 (135)
T 2e7s_A 71 KLNKEVEDLTA 81 (135)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 109
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=76.93 E-value=15 Score=28.00 Aligned_cols=24 Identities=8% Similarity=0.030 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 023697 70 ATHVALKQELSLAEQELRHLSSVA 93 (278)
Q Consensus 70 ~~~~~L~qEL~laqhEL~~l~~~i 93 (278)
.-+....++......+|...-..+
T Consensus 15 elFe~YE~df~~l~~~i~~kl~~i 38 (102)
T 2qyw_A 15 EHFEKLHEIFRGLLEDLQGVPERL 38 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555566666666666555544
No 110
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=76.53 E-value=5.2 Score=38.59 Aligned_cols=8 Identities=13% Similarity=0.260 Sum_probs=4.0
Q ss_pred HHHHHHHH
Q 023697 199 EQREIMEK 206 (278)
Q Consensus 199 eq~q~mek 206 (278)
.|.+.+++
T Consensus 161 ~H~~lg~~ 168 (455)
T 2dq0_A 161 LHVDLLEI 168 (455)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHhc
Confidence 35555554
No 111
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=76.48 E-value=4.9 Score=31.17 Aligned_cols=65 Identities=18% Similarity=0.298 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH---------------HHhhh-hccHHHHHHHHHHHHHHHH
Q 023697 120 VIESMHAELDRVRADIEKLCVIKQEMIKDLNE--INGDLA---------------KARDE-SKDMAAIKAEIETERQEIH 181 (278)
Q Consensus 120 ~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~--LekDL~---------------~~~~d-~~kl~~LkaEIe~LrqEl~ 181 (278)
.+..++.+|..|+.|..+|......|..++.. +..|.. ..... ...+..|++|++.||.-+.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777888888888777777777766 111211 11111 4678889999999998887
Q ss_pred hhh
Q 023697 182 KGR 184 (278)
Q Consensus 182 ~~r 184 (278)
.+.
T Consensus 93 ~lE 95 (100)
T 1go4_E 93 AME 95 (100)
T ss_dssp TCC
T ss_pred HHh
Confidence 664
No 112
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=76.20 E-value=18 Score=29.00 Aligned_cols=72 Identities=13% Similarity=0.297 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 67 RLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMI 146 (278)
Q Consensus 67 rla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~ 146 (278)
-++.....|-.+|..+.+++..|-..+.+.....|.|.+.| ..+..|+..+..+.++...+...|.
T Consensus 54 ~f~~~~~ela~dli~k~kqIe~LIdsLP~~~~see~Q~~ri--------------~~L~~E~~~~~~el~~~v~e~e~ll 119 (132)
T 1ykh_B 54 EFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKI--------------DMLQKKLVEVEDEKIEAIKKKEKLM 119 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555667888888889988888887765554444333 3344444444444444444444444
Q ss_pred HHHHHH
Q 023697 147 KDLNEI 152 (278)
Q Consensus 147 ~evq~L 152 (278)
.+|+.+
T Consensus 120 ~~v~~~ 125 (132)
T 1ykh_B 120 RHVDSM 125 (132)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 113
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=76.01 E-value=21 Score=27.88 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLA 157 (278)
Q Consensus 118 lr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~ 157 (278)
+-++.++.+|+.+.+.++.+|....++|...|+.|+++=.
T Consensus 3 ~~s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERD 42 (106)
T 4e61_A 3 LGSLVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIERE 42 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888999999999988888888888888887633
No 114
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=75.71 E-value=10 Score=29.34 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=16.2
Q ss_pred hccHHHHHHHHHHHHHHHHhhhhh
Q 023697 163 SKDMAAIKAEIETERQEIHKGRAA 186 (278)
Q Consensus 163 ~~kl~~LkaEIe~LrqEl~~~raa 186 (278)
..++.+|..||+.|+.|-++++..
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e 87 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777776666543
No 115
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=75.60 E-value=12 Score=36.45 Aligned_cols=28 Identities=7% Similarity=0.108 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 023697 195 ASNHEQREIMEKNIISVAQQIERLQAEL 222 (278)
Q Consensus 195 ~e~~eq~q~meknl~~m~~e~eklrael 222 (278)
.++.++++.+...+-.+-.++..+.+++
T Consensus 74 ~~l~~~~~~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 74 KDLIAEKEKLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666665555555555555555444
No 116
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=75.44 E-value=27 Score=31.97 Aligned_cols=13 Identities=15% Similarity=0.432 Sum_probs=4.2
Q ss_pred CCccccCCC-CCCC
Q 023697 241 STSYAASYG-NPDP 253 (278)
Q Consensus 241 ~~~y~~~~g-n~~~ 253 (278)
.|-||+|++ -|+.
T Consensus 320 aGiyGMNf~~mPel 333 (363)
T 2iub_A 320 AGIYGMNFEYMPEL 333 (363)
T ss_dssp TTSCC---------
T ss_pred HhhhcccCCCCCcc
Confidence 578999996 4543
No 117
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=75.34 E-value=44 Score=29.71 Aligned_cols=43 Identities=19% Similarity=0.046 Sum_probs=38.1
Q ss_pred HHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 023697 180 IHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAEL 222 (278)
Q Consensus 180 l~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael 222 (278)
-+.+|.+.-.|+.-+--+++..+..=+.=++|..|+..|+.=|
T Consensus 188 ~~~~r~AL~EERrRycflv~~l~pv~~~e~~~~~e~~~l~~~l 230 (253)
T 2d1l_A 188 KQAVRKALIEERGRFCTFISMLRPVIEEEISMLGEITHLQTIS 230 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHH
Confidence 3556788999999999999999999999999999999999855
No 118
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=75.26 E-value=24 Score=26.67 Aligned_cols=16 Identities=19% Similarity=0.341 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHhHH
Q 023697 211 VAQQIERLQAELANAE 226 (278)
Q Consensus 211 m~~e~eklrael~n~~ 226 (278)
+...++.++.++...+
T Consensus 89 le~~~~~l~~~l~~lk 104 (117)
T 2zqm_A 89 LERQEKKLNEKLKELT 104 (117)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 119
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=75.09 E-value=63 Score=31.31 Aligned_cols=25 Identities=12% Similarity=-0.007 Sum_probs=12.8
Q ss_pred hccHHHHHHHHHHHHHHHHhhhhhh
Q 023697 163 SKDMAAIKAEIETERQEIHKGRAAI 187 (278)
Q Consensus 163 ~~kl~~LkaEIe~LrqEl~~~raa~ 187 (278)
..+++.+...|.....+|.+....|
T Consensus 134 Q~Qi~en~n~~~~~~~~~e~~~~~i 158 (464)
T 1m1j_B 134 QKQRKDNDIILSEYNTEMELHYNYI 158 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544444
No 120
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=74.93 E-value=13 Score=28.44 Aligned_cols=23 Identities=9% Similarity=0.286 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023697 123 SMHAELDRVRADIEKLCVIKQEM 145 (278)
Q Consensus 123 ~lk~El~qlr~ei~~l~~~rqeL 145 (278)
.+...|..++.+|++....|.-|
T Consensus 19 kL~~Ki~el~~ei~ke~~~regl 41 (98)
T 2ke4_A 19 RLQQQLEERSRELQKEVDQREAL 41 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443333
No 121
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=74.78 E-value=21 Score=30.05 Aligned_cols=20 Identities=15% Similarity=0.190 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhhhhhhhh
Q 023697 170 KAEIETERQEIHKGRAAIEC 189 (278)
Q Consensus 170 kaEIe~LrqEl~~~raa~e~ 189 (278)
.+.|+.+.+|+..+|+.+..
T Consensus 112 eakI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 112 TAKINAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777766554
No 122
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=74.56 E-value=27 Score=26.80 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=19.4
Q ss_pred hccHHHHHHHHHHHHHHHHhhhhh
Q 023697 163 SKDMAAIKAEIETERQEIHKGRAA 186 (278)
Q Consensus 163 ~~kl~~LkaEIe~LrqEl~~~raa 186 (278)
-.++++|+.||+.|.++|+.++..
T Consensus 66 q~~v~elqgEI~~Lnq~Lqda~~~ 89 (99)
T 3ni0_A 66 QARIKELENEVTKLNQELENLRIQ 89 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346888999999999999888844
No 123
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=74.25 E-value=43 Score=28.99 Aligned_cols=68 Identities=16% Similarity=0.194 Sum_probs=30.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcc----HHHHHHHHHHHH
Q 023697 104 VRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKD----MAAIKAEIETER 177 (278)
Q Consensus 104 ~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~k----l~~LkaEIe~Lr 177 (278)
+++++|-. +.+...++.++..+..+.+.+.....+|.++++.+-++=.++..+ -+| |.+=|+.|..++
T Consensus 123 i~elfd~~------~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq 195 (213)
T 1ik9_A 123 IRELIAYA------LDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLH 195 (213)
T ss_dssp HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 36665555 333444444444444444444444444444444444444433333 222 344444444444
No 124
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=74.12 E-value=9.8 Score=26.00 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023697 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (278)
Q Consensus 127 El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~ 160 (278)
.+.+|..+++.|......|..+|..+..|++..+
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak 38 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQAAK 38 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555433
No 125
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=73.16 E-value=25 Score=28.86 Aligned_cols=78 Identities=14% Similarity=0.298 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 67 RLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMI 146 (278)
Q Consensus 67 rla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~ 146 (278)
-++.....|-.+|..+..++..|-..+.+.....|.|.+. +..+..|+..+..+.++...+...|-
T Consensus 54 ~f~~~~~ela~dli~kakqIe~LIdsLPg~~~seeeQ~~r--------------i~~Le~E~~~~~~el~~~v~eae~ll 119 (151)
T 1yke_B 54 EFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRK--------------IDMLQKKLVEVEDEKIEAIKKKEKLL 119 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSCHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566788888888888888887776554444333 34455555555555555555555666
Q ss_pred HHHHHHHHHHHH
Q 023697 147 KDLNEINGDLAK 158 (278)
Q Consensus 147 ~evq~LekDL~~ 158 (278)
.+|+.+=.++..
T Consensus 120 ~~v~~~l~~ia~ 131 (151)
T 1yke_B 120 RHVDSLIEDFVD 131 (151)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHHHH
Confidence 666665554443
No 126
>3pwx_A Putative flagellar HOOK-associated protein; structural genomics, structural protein, PSI-2, protein STRU initiative; 2.50A {Vibrio parahaemolyticus}
Probab=72.82 E-value=38 Score=29.42 Aligned_cols=78 Identities=14% Similarity=0.206 Sum_probs=63.3
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hccHHHHHHHHHHHHHHHHhhhh
Q 023697 109 EKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE---SKDMAAIKAEIETERQEIHKGRA 185 (278)
Q Consensus 109 ~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d---~~kl~~LkaEIe~LrqEl~~~ra 185 (278)
-++.+|..+++.++....-+.....-++.......+...-++++..-+-...+. ......+..||+.|+.+|...-.
T Consensus 11 a~~~~l~~~i~~l~q~~~N~~~a~s~l~~ae~aL~~i~~~l~r~rel~vqa~ngt~s~~dr~ai~~E~~~l~~~i~~iaN 90 (239)
T 3pwx_A 11 IKLLNLERENSAIAQYQSNIANLKTTLSSQETHLDSVSESLKSMRDIVLWGANGSLTDQDRSGMITELKSYRDSIESSFN 90 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCTTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 356688888999999999999999999999999999998888887766665543 45678899999999998876544
Q ss_pred h
Q 023697 186 A 186 (278)
Q Consensus 186 a 186 (278)
.
T Consensus 91 t 91 (239)
T 3pwx_A 91 A 91 (239)
T ss_dssp C
T ss_pred c
Confidence 3
No 127
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=72.67 E-value=6.9 Score=26.75 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 121 IESMHAELDRVRADIEKLCVIKQEMIKDL 149 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~ev 149 (278)
++.++.|+..++..+..|....++|.+++
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666665555555555555443
No 128
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=72.66 E-value=13 Score=28.37 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=14.6
Q ss_pred hccHHHHHHHHHHHHHHHHhhhh
Q 023697 163 SKDMAAIKAEIETERQEIHKGRA 185 (278)
Q Consensus 163 ~~kl~~LkaEIe~LrqEl~~~ra 185 (278)
..||...+.+|+.|+.++.+++.
T Consensus 73 ~~klr~Yk~dL~~lk~elk~~~~ 95 (102)
T 1vcs_A 73 SNRMRSYKQEMGKLETDFKRSRI 95 (102)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666666666666543
No 129
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=71.75 E-value=26 Score=27.44 Aligned_cols=30 Identities=7% Similarity=0.241 Sum_probs=17.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhHHhh
Q 023697 199 EQREIMEKNIISVAQQIERLQAELANAEKR 228 (278)
Q Consensus 199 eq~q~meknl~~m~~e~eklrael~n~~~r 228 (278)
.....+++++-.+...++++|+.+......
T Consensus 95 ~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~ 124 (133)
T 1fxk_C 95 SQKNELESTLQKMGENLRAITDIMMKLSPQ 124 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666555433
No 130
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=71.66 E-value=65 Score=29.99 Aligned_cols=23 Identities=4% Similarity=0.059 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHH
Q 023697 196 SNHEQREIMEKNIISVAQQIERL 218 (278)
Q Consensus 196 e~~eq~q~meknl~~m~~e~ekl 218 (278)
..++.+|.||...|..-+++=..
T Consensus 208 ~~~d~lQ~lEe~Ri~~lk~~L~~ 230 (406)
T 4dyl_A 208 GLLRSLQDLHEEMACILKEILQE 230 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999988887755443
No 131
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=71.64 E-value=53 Score=28.98 Aligned_cols=62 Identities=10% Similarity=0.193 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 023697 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKK 192 (278)
Q Consensus 127 El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk 192 (278)
.|..-+..++.....|+.|..+|+.|+.. ..+..||+.|+.||-.+-.+..-.++.+..-|.
T Consensus 98 ~IR~~E~svqp~R~~R~~l~~~I~kLk~k----~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR 159 (234)
T 3plt_A 98 SIRNIEASVQPSRDRKEKITDEIAHLKYK----DPQSTKIPVLEQELVRAEAESLVAEAQLSNITR 159 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhcc----CCCCchHHHHHHHHHHHHHHhhHHHHHHHHhHH
Confidence 33334455666666677777777776543 233677888877777777777666666655543
No 132
>2iaz_A Hypothetical protein SP1372; structural genomics, PSI-2, protei structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: a.281.1.2
Probab=71.63 E-value=13 Score=28.40 Aligned_cols=83 Identities=14% Similarity=0.223 Sum_probs=56.3
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cHHHHHHHHHHHHHHHHhh
Q 023697 105 RELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESK-DMAAIKAEIETERQEIHKG 183 (278)
Q Consensus 105 r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~-kl~~LkaEIe~LrqEl~~~ 183 (278)
..+++++-.|...|+..++++ .+..+...+.. ...-+.|-.+.+.+..++..++.-++ -.++...++..+..++..-
T Consensus 3 ~~I~d~A~eL~~~I~~s~ey~-~~~~a~~~i~~-d~ea~~l~~~f~~~q~~~~~~q~~G~~~~~e~~~~~~~l~~~i~~~ 80 (113)
T 2iaz_A 3 SNIYDSANELSRGLRGLPEYK-AVKAAKDAIAA-DAEASKIFTDYLAFQEEIQKLAQTGQMPDASFQAKMEGFGKQIQGN 80 (113)
T ss_dssp HHHHHHHHHHHHHHHTSHHHH-HHHHHHHHHHH-CHHHHHHHHHHHHHGGGTTTTCC----CCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHcCHHHH-HHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhCC
Confidence 458889999999999999886 77777777754 33445555666666666666654444 2366778888888888776
Q ss_pred hhhhhh
Q 023697 184 RAAIEC 189 (278)
Q Consensus 184 raa~e~ 189 (278)
-...+|
T Consensus 81 p~v~~y 86 (113)
T 2iaz_A 81 SLLSEF 86 (113)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655555
No 133
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=71.57 E-value=41 Score=30.41 Aligned_cols=13 Identities=15% Similarity=0.347 Sum_probs=9.5
Q ss_pred CCccccCCC-CCCC
Q 023697 241 STSYAASYG-NPDP 253 (278)
Q Consensus 241 ~~~y~~~~g-n~~~ 253 (278)
.|-||+|+. -|+.
T Consensus 296 aGiyGMNf~~mPel 309 (339)
T 4ev6_A 296 TGIYGMNFSYLPLA 309 (339)
T ss_dssp HHHTTCCCSCCTTS
T ss_pred HhhccCcCCCCCCc
Confidence 479999996 3654
No 134
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=71.35 E-value=29 Score=25.83 Aligned_cols=29 Identities=14% Similarity=0.319 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 122 ESMHAELDRVRADIEKLCVIKQEMIKDLN 150 (278)
Q Consensus 122 e~lk~El~qlr~ei~~l~~~rqeL~~evq 150 (278)
..+...+..+..+|..+......+..++.
T Consensus 68 ~~L~~~~e~i~~~i~~le~~~~~~~~~l~ 96 (107)
T 1fxk_A 68 EELQEKLETLQLREKTIERQEERVMKKLQ 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444443333333333333
No 135
>2bsg_A Fibritin; viral protein, attachment protein, bacteriophage assembly, chaperone, coiled coil, structural protein; 15.00A {Bacteriophage T4}
Probab=71.10 E-value=26 Score=34.12 Aligned_cols=102 Identities=14% Similarity=0.147 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHh-----------------
Q 023697 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHK----------------- 182 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~----------------- 182 (278)
+...+.+|..++..+.++......+...+..|..|+-.|+.. ...-.-++..|.-+|.||-.
T Consensus 96 I~~n~~dI~~Lk~~~~~~~~~l~~~~~~~~ei~~diG~~~~~~d~~~rTV~~DI~~IK~elG~Y~g~DING~p~pgs~~t 175 (487)
T 2bsg_A 96 IGINKKDISDLKTLTSEHTEILNGTNNTVDSILADIGPFNAEANSVYRTIRNDLLWIKRELGQYTGQDINGLPVVGNPSS 175 (487)
T ss_pred HHhhHHHHHHHhcchhhhhhhhhhhccchHHHHhhcCccCcccCCCccccchhHHHHHHHhccCCCCCCCCCcCCCCCCc
Confidence 344444444444444444444444444555555555544433 22233455566666666543
Q ss_pred -hhhhhhhhhhhchhhHHHHHHHHHh-----HHHHHHHHHHHHHHH
Q 023697 183 -GRAAIECEKKNRASNHEQREIMEKN-----IISVAQQIERLQAEL 222 (278)
Q Consensus 183 -~raa~e~ekk~~~e~~eq~q~mekn-----l~~m~~e~eklrael 222 (278)
+.-.|+-=...-..+-.....+|++ +=++..||.+||+||
T Consensus 176 GmK~rV~~Nt~~i~~~~~RIt~LE~~~~dSDVG~Lt~ev~~LR~El 221 (487)
T 2bsg_A 176 GMKHRIINNTDVITSQGIRLSELETKFIESDVGSLTIEVGNLREEL 221 (487)
T ss_pred ceehhhhhhHHHHHhcccHHHHHHHhcccCCchHHHHHHHHHHHHh
Confidence 1222222223334444556677776 457889999999999
No 136
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=70.97 E-value=4 Score=38.92 Aligned_cols=70 Identities=11% Similarity=0.241 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhh
Q 023697 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAI 187 (278)
Q Consensus 118 lr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~ 187 (278)
+..+-++-++-.++..+++.|.+.++.++.+|..+.++=.+...-..++..|+.+|+.+..++..+...+
T Consensus 29 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (425)
T 2dq3_A 29 VDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEEL 98 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555556666666777777777766665432211111002334445555555555544444443
No 137
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=70.67 E-value=53 Score=31.33 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q 023697 46 HLEDRIAIQHSDIQSLLQDNQRL 68 (278)
Q Consensus 46 ~Le~~L~~q~~eIq~ll~dnqrl 68 (278)
.|.+-|-.++..|..-|.+.+..
T Consensus 24 gl~d~L~kye~~V~~~l~~L~~~ 46 (411)
T 3ghg_C 24 GIADFLSTYQTKVDKDLQSLEDI 46 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhccchhhHHHHHHHH
Confidence 34555666666554444444433
No 138
>2oeq_A Protein of unknown function, DUF964; helix bundle, structural genomics, PSI-2, protein structure initiative; 2.90A {Geobacillus stearothermophilus} SCOP: a.281.1.2
Probab=70.55 E-value=18 Score=28.25 Aligned_cols=99 Identities=11% Similarity=0.177 Sum_probs=69.4
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cHHHHHHHHHHHHHHHHhhh
Q 023697 106 ELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESK-DMAAIKAEIETERQEIHKGR 184 (278)
Q Consensus 106 ~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~-kl~~LkaEIe~LrqEl~~~r 184 (278)
.++|++-.|...|+..++++ .+..+...+.. ...-+.|-.+.+.+..++...+.-++ -.++...++..+..++..-.
T Consensus 7 ~I~d~A~eL~~~I~~seEy~-~~k~A~~~l~~-D~ea~~li~~F~~~q~~~q~~q~~G~~~~~e~~~~l~~l~~~l~~n~ 84 (122)
T 2oeq_A 7 PLHALARQLEQAIRASEPFQ-QLKRAYEDVRR-DETAYRMFANVRDIQLRLHEKQMRGAAILPDEIEQAQKAMALAQQNE 84 (122)
T ss_dssp TTHHHHHHHHHHHHHSHHHH-HHHHHHHHHHT-CTTHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHHHHhCHHHH-HHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhCCH
Confidence 47889999999999999886 77777776644 44456677778888888887775564 34788888888888887665
Q ss_pred hhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHH
Q 023697 185 AAIECEKKNRASNHEQREIMEKNIISVAQQIERL 218 (278)
Q Consensus 185 aa~e~ekk~~~e~~eq~q~meknl~~m~~e~ekl 218 (278)
..-+|- .-|..|-.|-.+|-+.
T Consensus 85 ~v~~~~------------~Ae~~l~~ll~~I~~i 106 (122)
T 2oeq_A 85 KLARLM------------ALEQQMSITIAEVQQI 106 (122)
T ss_dssp HHHHHH------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHH------------HHHHHHHHHHHHHHHH
Confidence 555443 3345555555555443
No 139
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=70.12 E-value=42 Score=27.17 Aligned_cols=38 Identities=8% Similarity=0.244 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHH
Q 023697 136 EKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEI 173 (278)
Q Consensus 136 ~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEI 173 (278)
.++....+++..+-..+.+.|.....+..++..+.+++
T Consensus 117 ~~~~~~~~e~~~~~~~~ek~ls~As~~~~k~~~~e~~~ 154 (155)
T 2oto_A 117 HRATALEKELEEKKKALELAIDQASQDYNRANVLEKEL 154 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34444444444444455555555433344555554443
No 140
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=70.04 E-value=26 Score=24.65 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHL 89 (278)
Q Consensus 44 ~~~Le~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l 89 (278)
|=.+..-|++-++.||.++.-|..++++...++.+|.-.+.|-.-|
T Consensus 15 ylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 15 YLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 4456666777777999999999988877777777766666554443
No 141
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=69.57 E-value=26 Score=28.95 Aligned_cols=72 Identities=10% Similarity=0.139 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHH
Q 023697 131 VRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREI 203 (278)
Q Consensus 131 lr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~ 203 (278)
+...+..+....+.|.-+.+++.+++..-..+. --|.+..-|+.+++.+..-++.+..=|+--...++|++.
T Consensus 34 l~~~i~q~d~elqQLefq~kr~~~e~~~q~~~~-~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~qv~~ 105 (150)
T 4dci_A 34 ISNGIANADQQLAQLEQEGQTVVDQVRRQSANP-LDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQVRE 105 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555555555566666666666655322221 116666666666666666555555555444444555443
No 142
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=69.29 E-value=58 Score=28.42 Aligned_cols=89 Identities=11% Similarity=0.113 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 65 NQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQE 144 (278)
Q Consensus 65 nqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqe 144 (278)
+...-++...=.|++.++.||.++-+..+.-...|. |+.+-|. .+..++-.|-+.+.+|..|....+.
T Consensus 63 qgAYdAQVrNDEQDViL~dHe~rI~a~~a~l~dHE~---------RIt~~~~---~ia~~e~Rit~~e~~i~~l~~~v~~ 130 (242)
T 3c9i_A 63 QGAYDAQVKNDEQDVELADHEARIKQLRIDVDDHES---------RITANTK---AITALNVRVTTAEGEIASLQTNVSA 130 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHhcCcccceeeecchhhhhhhhcccccHHH---------Hhhhhhh---hhhhhhheeecccccchhhhhhhhh
Confidence 344556666777899999999887766655333222 2223333 3556666677777777777777777
Q ss_pred HHHHHHHHHHHHHHHhhh-hcc
Q 023697 145 MIKDLNEINGDLAKARDE-SKD 165 (278)
Q Consensus 145 L~~evq~LekDL~~~~~d-~~k 165 (278)
|..+|-..+..+..++.| .++
T Consensus 131 ld~~vt~~et~Isal~~DyVS~ 152 (242)
T 3c9i_A 131 LDGRVTTAENNISALQADYVSK 152 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHBCBS
T ss_pred hcccccccccchhhhhhhhhhh
Confidence 777777777777776666 443
No 143
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=69.12 E-value=14 Score=35.13 Aligned_cols=30 Identities=7% Similarity=0.294 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 121 IESMHAELDRVRADIEKLCVIKQEMIKDLN 150 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq 150 (278)
+-++-++-.++..+++.|.+.++.++.+|.
T Consensus 30 ~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~ 59 (421)
T 1ses_A 30 LLALDREVQELKKRLQEVQTERNQVAKRVP 59 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555543
No 144
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=69.12 E-value=2.6 Score=24.63 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=15.1
Q ss_pred HHhhh--hccHHHHHHHHHHHHH
Q 023697 158 KARDE--SKDMAAIKAEIETERQ 178 (278)
Q Consensus 158 ~~~~d--~~kl~~LkaEIe~Lrq 178 (278)
+|.+| .+|+.+|+..|-+|+|
T Consensus 6 efendaleqkiaalkqkiaslkq 28 (28)
T 3ra3_A 6 EFENDALEQKIAALKQKIASLKQ 28 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhccHHHHHHHHHHHHHHHHhcC
Confidence 46666 6788888888877763
No 145
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=68.68 E-value=55 Score=27.98 Aligned_cols=31 Identities=10% Similarity=0.097 Sum_probs=23.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 59 QSLLQDNQRLAATHVALKQELSLAEQELRHL 89 (278)
Q Consensus 59 q~ll~dnqrla~~~~~L~qEL~laqhEL~~l 89 (278)
..++.+...+......+..+-+..-..|..-
T Consensus 31 ~~~~~el~~f~~eRa~iE~eYak~L~kLa~~ 61 (276)
T 2v0o_A 31 QISTKELADFVRERATIEEAYSRSMTKLAKS 61 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567888888899999988888776665443
No 146
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=68.55 E-value=36 Score=25.72 Aligned_cols=38 Identities=8% Similarity=0.326 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAK 158 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~ 158 (278)
...++..+..+..+|..+......+..++..+...|..
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555554444
No 147
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=68.34 E-value=59 Score=28.15 Aligned_cols=22 Identities=14% Similarity=0.031 Sum_probs=14.1
Q ss_pred chhhHHHHHHHHHhHHHHHHHH
Q 023697 194 RASNHEQREIMEKNIISVAQQI 215 (278)
Q Consensus 194 ~~e~~eq~q~meknl~~m~~e~ 215 (278)
-.+.++++|.||...+...+++
T Consensus 214 ~~~~~~~lQ~le~~r~~~lk~~ 235 (305)
T 2efl_A 214 IPNIFQKIQEMEERRIVRMGES 235 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667778887776655543
No 148
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=68.17 E-value=36 Score=25.69 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 023697 167 AAIKAEIETERQEIH 181 (278)
Q Consensus 167 ~~LkaEIe~LrqEl~ 181 (278)
....+++.+|..-|+
T Consensus 82 ~~AE~evasLnRriq 96 (101)
T 3u59_A 82 TDAEAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555555544
No 149
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=67.87 E-value=26 Score=34.15 Aligned_cols=8 Identities=38% Similarity=0.389 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 023697 198 HEQREIME 205 (278)
Q Consensus 198 ~eq~q~me 205 (278)
..|...++
T Consensus 186 ~dH~~Lg~ 193 (501)
T 1wle_A 186 RGHLEIAE 193 (501)
T ss_dssp CCHHHHHH
T ss_pred CCHHHHHh
Confidence 34444444
No 150
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=67.72 E-value=26 Score=34.08 Aligned_cols=35 Identities=11% Similarity=-0.038 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 120 VIESMHAELDRVRADIEKLCVIKQEMIKDLNEING 154 (278)
Q Consensus 120 ~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~Lek 154 (278)
.+-++-++-.++..+++.|.+.+..++.+|..+.+
T Consensus 38 ~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 38 AIIEADKKWRRTQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444455555666666677777777776666544
No 151
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=67.59 E-value=33 Score=24.93 Aligned_cols=32 Identities=38% Similarity=0.470 Sum_probs=22.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023697 63 QDNQRLAATHVALKQELSLAEQELRHLSSVAA 94 (278)
Q Consensus 63 ~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~ 94 (278)
.++..+-++.+.||.+|.....+++.|+..+.
T Consensus 11 ~~~~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~ 42 (75)
T 3a7o_A 11 SHDDALLNTLAILQKELKSKEQEIRRLKEVIA 42 (75)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555777888888888888888876665
No 152
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=67.40 E-value=31 Score=25.31 Aligned_cols=48 Identities=10% Similarity=0.198 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccH
Q 023697 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDM 166 (278)
Q Consensus 119 r~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl 166 (278)
+..+.-+....++...+..|...-..|..+|..|++++..+..=..++
T Consensus 29 rSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q~ 76 (78)
T 1gu4_A 29 KSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 334444445555555666666666666666666666666655433333
No 153
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=67.35 E-value=29 Score=24.20 Aligned_cols=33 Identities=9% Similarity=0.216 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDL 156 (278)
Q Consensus 124 lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL 156 (278)
-+.++..+..+++.|.....+|..+|..|+.++
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555544444544444444443
No 154
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=66.87 E-value=4.9 Score=32.49 Aligned_cols=64 Identities=9% Similarity=0.132 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Q 023697 131 VRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNR 194 (278)
Q Consensus 131 lr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~ 194 (278)
+..+.+.|...+..++.++..++.++.+.+.. .-.+.-|+=.+++|..+|.--|.....||..-
T Consensus 21 Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaalkmEr~~~~eEKrkL 85 (130)
T 3cl3_D 21 ATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASEEKRKL 85 (130)
T ss_dssp ------------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555555554433 55577777777788777777777777777543
No 155
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=66.58 E-value=7.4 Score=23.51 Aligned_cols=19 Identities=37% Similarity=0.482 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 023697 166 MAAIKAEIETERQEIHKGR 184 (278)
Q Consensus 166 l~~LkaEIe~LrqEl~~~r 184 (278)
+.+|+.||-.|++|+.-+.
T Consensus 4 iaalkqeiaalkkeiaalk 22 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALK 22 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544433
No 156
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=66.53 E-value=1e+02 Score=30.17 Aligned_cols=72 Identities=18% Similarity=0.171 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 023697 117 ELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEK 191 (278)
Q Consensus 117 elr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ek 191 (278)
++...+-+++-+...++++..+.+.++.+.+.+.....+.+..+ ..+.++.+|-..++..+...+..+-.+|
T Consensus 347 evae~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~---d~l~a~~kek~~~~n~~a~~~~KiAE~K 418 (602)
T 1cii_A 347 EVAEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHAN---DALNALLKEKENIRNQLSGINQKIAEEK 418 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 34455666677788888888888888888888888877755533 4445555555666666766666644444
No 157
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=66.43 E-value=12 Score=26.36 Aligned_cols=41 Identities=29% Similarity=0.385 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHH
Q 023697 167 AAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQ 214 (278)
Q Consensus 167 ~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e 214 (278)
=+|+.++..|+++.++....+|+|.+++ +.+|+.+-.|...
T Consensus 10 YalkDev~eLk~e~k~~k~~le~eqraR-------k~LE~~vrk~~k~ 50 (61)
T 3l4f_A 10 YALKDEVQELRQDNKKMKKSLEEEQRAR-------KDLEKLVRKVLKN 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhh
Confidence 4788999999999999999999988765 4556665555543
No 158
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=66.22 E-value=22 Score=27.31 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLA 157 (278)
Q Consensus 123 ~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~ 157 (278)
.++.+|..+-.++..+... +...++.|.++..
T Consensus 47 ~~~~~l~~l~~~i~~~a~~---ik~~Lk~l~~~~~ 78 (127)
T 1ez3_A 47 KTKEELEELMSDIKKTANK---VRSKLKSIEQSIE 78 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 4555555555555544433 3334444444444
No 159
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=66.13 E-value=14 Score=36.47 Aligned_cols=106 Identities=12% Similarity=0.222 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhc----hh
Q 023697 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNR----AS 196 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~----~e 196 (278)
..++...+.+.+.+.........+....+..|..++...+.+...|..-..+.+...+.|......-+.||-.= .+
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~ 416 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRA 416 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666665555555555555555555544433333333210 11
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023697 197 NHEQREIMEKNIISVAQQIERLQAELANAE 226 (278)
Q Consensus 197 ~~eq~q~meknl~~m~~e~eklrael~n~~ 226 (278)
......-|+.-.-.-+.|.++|+.++..|.
T Consensus 417 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~ 446 (575)
T 2i1j_A 417 KQEEVSRIQQEVELKDSETRRLQEEVEDAR 446 (575)
T ss_dssp -------------------------CHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222333333334557777777776665
No 160
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=65.64 E-value=8.7 Score=35.17 Aligned_cols=46 Identities=11% Similarity=0.144 Sum_probs=34.6
Q ss_pred hhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhH
Q 023697 160 RDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNI 208 (278)
Q Consensus 160 ~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl 208 (278)
+...+++..|.++++.|+.|+.+++..++-.+|++.+.++ .|+|++
T Consensus 181 n~~~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n~~rl~---~Lqk~~ 226 (315)
T 2ve7_A 181 NVDAFKLESLEAKNRALNEQIARLEQERSTANKANAERLK---RLQKSA 226 (315)
T ss_dssp TCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT---THHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH---HHHHHH
Confidence 3347888999999999999999998888888887655544 445554
No 161
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=65.42 E-value=43 Score=25.46 Aligned_cols=20 Identities=15% Similarity=0.204 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023697 44 LHHLEDRIAIQHSDIQSLLQ 63 (278)
Q Consensus 44 ~~~Le~~L~~q~~eIq~ll~ 63 (278)
+...|+.......+|.+.+.
T Consensus 17 Fe~YE~df~~l~~~i~~kl~ 36 (102)
T 2qyw_A 17 FEKLHEIFRGLLEDLQGVPE 36 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555555445544444
No 162
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=65.27 E-value=20 Score=31.87 Aligned_cols=13 Identities=54% Similarity=0.583 Sum_probs=6.7
Q ss_pred HHHHHHHHHHhHH
Q 023697 214 QIERLQAELANAE 226 (278)
Q Consensus 214 e~eklrael~n~~ 226 (278)
+++.+++.+..++
T Consensus 136 ~l~~a~a~l~~a~ 148 (341)
T 3fpp_A 136 QIKRNQASLDTAK 148 (341)
T ss_dssp HHHHTHHHHTTTT
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555444
No 163
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=65.24 E-value=34 Score=24.67 Aligned_cols=31 Identities=16% Similarity=0.272 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHhH
Q 023697 70 ATHVALKQELSLAEQELRHLSSVAASVKAER 100 (278)
Q Consensus 70 ~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~ 100 (278)
.+.+.|...|.-.+.||.+|...++++++--
T Consensus 3 kQNKeL~~kl~~Kq~EI~rLnvlvgslR~KL 33 (74)
T 2q6q_A 3 QQNKELNFKLREKQNEIFELKKIAETLRSKL 33 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777888888777777665543
No 164
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=65.09 E-value=1e+02 Score=29.79 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023697 46 HLEDRIAIQHSDIQSLL 62 (278)
Q Consensus 46 ~Le~~L~~q~~eIq~ll 62 (278)
.|.+-|-.++..|..-|
T Consensus 81 glad~L~kye~~V~~dl 97 (461)
T 3ghg_B 81 QLQEALLQQERPIRNSV 97 (461)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhcccchhhHH
Confidence 34555555555333333
No 165
>2d4x_A Flagellar HOOK-associated protein 3; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 1.90A {Salmonella typhimurium}
Probab=65.08 E-value=47 Score=28.52 Aligned_cols=77 Identities=6% Similarity=0.078 Sum_probs=61.6
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hccHHHHHHHHHHHHHHHHhhhhh
Q 023697 110 KSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE---SKDMAAIKAEIETERQEIHKGRAA 186 (278)
Q Consensus 110 k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d---~~kl~~LkaEIe~LrqEl~~~raa 186 (278)
.+.+|.++++.++.+..-+.....-++.......+...-++++..-+-...+. ......+..|++.|+.+|.+.-..
T Consensus 10 ~~~~l~~~~~~l~q~~~n~~~~~s~l~~ae~aL~~i~~~l~r~rel~vqa~ngt~s~~dr~~i~~e~~~l~~~i~~~an~ 89 (248)
T 2d4x_A 10 QAVVLSQAQAQNSQYALARTFATQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTLSDDDRASLATDLQGIRDQLMNLANS 89 (248)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 46688888999999999999999999998888888888888888666665433 356788899999999999876554
No 166
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=64.99 E-value=52 Score=26.34 Aligned_cols=104 Identities=16% Similarity=0.302 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHhH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 73 VALKQELSLAEQELRHLSSVAASVKAER-DAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNE 151 (278)
Q Consensus 73 ~~L~qEL~laqhEL~~l~~~i~~~~ae~-e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~ 151 (278)
..|+..++-+++++..+...+.++.-+- +-++.+-+. ..++++ ++.=+++|..+ .+|...+.+|..+|..
T Consensus 9 ~~l~~KvAElekkv~~lek~lk~~~e~d~e~y~ke~~~--~~~qse---le~k~aeLe~l----eeL~~ki~eL~~kvA~ 79 (125)
T 2pms_C 9 VAPQAKIAELENQVHRLEQELKEIDESESEDYAKEGFR--APLQSK---LDAKKAKLSKL----EELSDKIDELDAEIAK 79 (125)
T ss_dssp HSHHHHHHHHHHHHHHHHHHTTTTCC--------------CHHHHH---HHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHh--HHHHHH---HHHHHHHHHHH----HHHHhHHHHHHHHHHH
Confidence 4566666777777777766665544332 111111110 012223 22333344333 4577778888888888
Q ss_pred HHHHHHHHhhhh----ccHHHHHHHHHHHHHHHHhhhh
Q 023697 152 INGDLAKARDES----KDMAAIKAEIETERQEIHKGRA 185 (278)
Q Consensus 152 LekDL~~~~~d~----~kl~~LkaEIe~LrqEl~~~ra 185 (278)
++.++..+.... .-+..|+..|..-+.|+.+..+
T Consensus 80 le~e~~~~e~~~~~~~~~~e~le~~la~KkAEleKtqa 117 (125)
T 2pms_C 80 LEDQLKAAEENNNVEDYFKEGLEKTIAAKKAELEKTEA 117 (125)
T ss_dssp HHHHHHCCCC----CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888766321 1144555555555555544443
No 167
>3k8w_A Flagellin homolog; flagellum, structural protein, bacterial flagellu; 1.70A {Sphingomonas SP} PDB: 2zbi_A 3k8v_A
Probab=64.86 E-value=63 Score=29.88 Aligned_cols=79 Identities=15% Similarity=0.146 Sum_probs=63.1
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hccHHHHHHHHHHHHHHHHhhh
Q 023697 108 YEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE---SKDMAAIKAEIETERQEIHKGR 184 (278)
Q Consensus 108 ~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d---~~kl~~LkaEIe~LrqEl~~~r 184 (278)
+-.+.+|..+++.++.+..-+.....-++.......+...-++++..-.-...++ ......+..||+.|+.+|.+.-
T Consensus 28 ~aia~~L~sqi~~l~Q~~rN~~da~S~LqtAE~AL~~i~diLqrmRELaVQAaNgT~s~~DR~aIa~Ei~qL~~eI~~iA 107 (326)
T 3k8w_A 28 LAISDRMTAQIKGLTQAQRNANDGISLAQTAEGALGEISNNLQRIRELAVQASNGTNTQTDRDALQAEVTQLQSEIQRVA 107 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888999999999999999999998888888888888887655555433 3567888999999999988876
Q ss_pred hh
Q 023697 185 AA 186 (278)
Q Consensus 185 aa 186 (278)
..
T Consensus 108 Ns 109 (326)
T 3k8w_A 108 EQ 109 (326)
T ss_dssp HH
T ss_pred hh
Confidence 53
No 168
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=64.82 E-value=11 Score=28.83 Aligned_cols=75 Identities=7% Similarity=0.187 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHH
Q 023697 46 HLEDRIAIQHSDIQSLLQDNQRLAATH-VALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESM 124 (278)
Q Consensus 46 ~Le~~L~~q~~eIq~ll~dnqrla~~~-~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~l 124 (278)
.|.+-|.....|...+..+....-... ....-.++..-.|++.+...+-.+.... .+..+.+
T Consensus 11 Rl~ELLD~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h-----------------~kmKq~Y 73 (92)
T 3vp9_A 11 KLNELLDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTH-----------------RKMKDAY 73 (92)
T ss_dssp ------CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHH
Confidence 344444444444444333332222111 1333445555556666655555444443 3335556
Q ss_pred HHHHHHHHHHHHH
Q 023697 125 HAELDRVRADIEK 137 (278)
Q Consensus 125 k~El~qlr~ei~~ 137 (278)
.+||..|+.++..
T Consensus 74 EeEI~rLr~eLe~ 86 (92)
T 3vp9_A 74 EEEIKHLKLGLEQ 86 (92)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665543
No 169
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=64.50 E-value=34 Score=24.83 Aligned_cols=31 Identities=13% Similarity=0.224 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNE 151 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~ 151 (278)
+..++..|..++.++..-...+..+..+++.
T Consensus 16 N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~ 46 (72)
T 3cve_A 16 NKDLEGQLSEMEQRLEKSQSEQDAFRSNLKT 46 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444333333
No 170
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=64.35 E-value=45 Score=25.34 Aligned_cols=75 Identities=23% Similarity=0.303 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHH
Q 023697 128 LDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE----SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREI 203 (278)
Q Consensus 128 l~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d----~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~ 203 (278)
+.-++..++.-...+.+|..+.+.|+.-+..+.++ +++|.+|++.|+.. -.-++.||-++.++-..+--
T Consensus 6 La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~-------Lk~l~~EklAkldLE~RLsK 78 (101)
T 1d7m_A 6 LAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDET-------LKNLELEKLARMELEARLAK 78 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHcccHHHHHHHHHHHHHhh
Confidence 44455555555556666666666666666655544 56677777766543 34577899999999888888
Q ss_pred HHHhHH
Q 023697 204 MEKNII 209 (278)
Q Consensus 204 meknl~ 209 (278)
|||+=.
T Consensus 79 tEKDkA 84 (101)
T 1d7m_A 79 TEKDRA 84 (101)
T ss_dssp HHHHHH
T ss_pred hhhHHH
Confidence 888744
No 171
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=64.13 E-value=72 Score=27.63 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=10.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHH
Q 023697 61 LLQDNQRLAATHVALKQELSLA 82 (278)
Q Consensus 61 ll~dnqrla~~~~~L~qEL~la 82 (278)
++.+...+......|..+-+..
T Consensus 22 ~~~el~~f~keRa~iE~eYak~ 43 (301)
T 2efk_A 22 LLDRYVKFVKERTEVEQAYAKQ 43 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555554443
No 172
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=64.02 E-value=36 Score=25.51 Aligned_cols=31 Identities=10% Similarity=0.231 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 129 DRVRADIEKLCVIKQEMIKDLNEINGDLAKA 159 (278)
Q Consensus 129 ~qlr~ei~~l~~~rqeL~~evq~LekDL~~~ 159 (278)
.++...+..|...-..|..+|+.|++++..+
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~L 69 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTL 69 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444433
No 173
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=63.31 E-value=36 Score=26.29 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 023697 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKD 165 (278)
Q Consensus 127 El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~k 165 (278)
.+.++..+-..|....+....+|..|+.++.++..+++.
T Consensus 45 ~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~ 83 (104)
T 3s9g_A 45 SLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQ 83 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHH
Confidence 333344444444444455555666666665555554443
No 174
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=62.97 E-value=20 Score=25.56 Aligned_cols=49 Identities=12% Similarity=0.141 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhh--hccHHHHHHHHHHHHHHHHhhhhhhhhh
Q 023697 142 KQEMIKDLNEINGDLAKARDE--SKDMAAIKAEIETERQEIHKGRAAIECE 190 (278)
Q Consensus 142 rqeL~~evq~LekDL~~~~~d--~~kl~~LkaEIe~LrqEl~~~raa~e~e 190 (278)
...|..++..|..|+.-.++- =.|-.-|...+++|..||..+...+.-|
T Consensus 8 ~~~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~ 58 (65)
T 3sja_C 8 YLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSE 58 (65)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344445555555555554433 3556666666666666666666665544
No 175
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=62.50 E-value=79 Score=27.54 Aligned_cols=127 Identities=17% Similarity=0.155 Sum_probs=0.0
Q ss_pred CCCCCCCCchHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHhHHH
Q 023697 34 RALPPQHSPSLHHLEDRIAIQHS-------DIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVA----ASVKAERDA 102 (278)
Q Consensus 34 Gs~p~~~~~l~~~Le~~L~~q~~-------eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i----~~~~ae~e~ 102 (278)
|...+|....+.-|+.....++. -|+..+...++|-.-...+.++-.....-|......+ ..+..+.
T Consensus 85 ~~~~ppeg~~~~di~~~W~~Le~ae~eRe~aL~~el~RlerLe~La~kf~rka~~~e~~L~~~~~~L~~d~~~l~~~~-- 162 (235)
T 2odv_A 85 GQLKVPPGYHPLDVEKEWGKLHVAILEREKQLRSEFERLEALQRIVTKLQMEAGLAEEQLNQADALLQSDVRLLAAGK-- 162 (235)
T ss_dssp TSSCCCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC--
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhH--
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hccHHHHHHHHHHHHHHH
Q 023697 103 EVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE--SKDMAAIKAEIETERQEI 180 (278)
Q Consensus 103 ~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d--~~kl~~LkaEIe~LrqEl 180 (278)
- ++..+++..+|..+...|+.+.+..++|. ++.=.+++ .++...|......|+..+
T Consensus 163 ----a----------~k~~e~ie~dL~~~e~~i~~l~~~a~~L~--------~~~y~~a~~i~~r~~~l~~~w~~L~~~~ 220 (235)
T 2odv_A 163 ----V----------PQRAGEVERDLDKADSMIRLLFNDVQTLK--------DGRHPQGEQMYRRVYRLHKRLVAIRTEY 220 (235)
T ss_dssp ----C----------CSCHHHHHHHHHHHHHHHHHHHHHHHHHH--------HTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----H----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hhhh
Q 023697 181 HKGR 184 (278)
Q Consensus 181 ~~~r 184 (278)
..-+
T Consensus 221 ~~r~ 224 (235)
T 2odv_A 221 NLRL 224 (235)
T ss_dssp HHHT
T ss_pred HHHH
No 176
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=62.32 E-value=21 Score=22.51 Aligned_cols=30 Identities=10% Similarity=0.232 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 129 DRVRADIEKLCVIKQEMIKDLNEINGDLAK 158 (278)
Q Consensus 129 ~qlr~ei~~l~~~rqeL~~evq~LekDL~~ 158 (278)
-|+...+++|.....+|..+|.+|.+-+.+
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 466667777777777777777777765544
No 177
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=62.31 E-value=54 Score=25.63 Aligned_cols=76 Identities=9% Similarity=0.233 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhH
Q 023697 148 DLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANA 225 (278)
Q Consensus 148 evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael~n~ 225 (278)
++.+|..||.-|.+-..|+.-+.+|+.-..+.+......=+.| .-.++-+..+.|+.++=-..+=|+||+.+|.+.
T Consensus 25 ELeSlK~EL~HfE~rl~K~rH~~~el~l~~~k~~~~~~~g~~e--~~s~~~ek~~~le~k~Kk~~~kV~Kl~~dl~~r 100 (109)
T 2fcw_A 25 ELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAESVGDGE--RVSRSREKHALLEGRTKELGYTVKKHLQDLSGR 100 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchh--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666654444433332211110 001122337788888888889999999988544
No 178
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=62.18 E-value=10 Score=33.92 Aligned_cols=43 Identities=26% Similarity=0.282 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 48 EDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLS 90 (278)
Q Consensus 48 e~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~ 90 (278)
++++.....++..+-..|.+|.++...+++||...+.||..|.
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455566667777778888888888888888888888888774
No 179
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=61.85 E-value=15 Score=25.08 Aligned_cols=31 Identities=10% Similarity=0.344 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 126 AELDRVRADIEKLCVIKQEMIKDLNEINGDL 156 (278)
Q Consensus 126 ~El~qlr~ei~~l~~~rqeL~~evq~LekDL 156 (278)
.++..++.+..+|.....+|..+++.+.+.|
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555444433
No 180
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=61.14 E-value=10 Score=36.08 Aligned_cols=25 Identities=12% Similarity=0.380 Sum_probs=9.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Q 023697 198 HEQREIMEKNIISVAQQIERLQAEL 222 (278)
Q Consensus 198 ~eq~q~meknl~~m~~e~eklrael 222 (278)
.++++.+...+-.+-.++..+.+++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (425)
T 2dq3_A 74 QNRVKELKEEIDRLEEELRKVEEEL 98 (425)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443333333333333333333
No 181
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=60.47 E-value=49 Score=24.52 Aligned_cols=9 Identities=22% Similarity=0.486 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 023697 169 IKAEIETER 177 (278)
Q Consensus 169 LkaEIe~Lr 177 (278)
|...++.+.
T Consensus 70 L~~~~e~i~ 78 (107)
T 1fxk_A 70 LQEKLETLQ 78 (107)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 182
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=60.41 E-value=92 Score=27.66 Aligned_cols=49 Identities=12% Similarity=0.224 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh------------hhhhhhchhhHHHHHHHHHhHHHHHHHH
Q 023697 166 MAAIKAEIETERQEIHKGRAAI------------ECEKKNRASNHEQREIMEKNIISVAQQI 215 (278)
Q Consensus 166 l~~LkaEIe~LrqEl~~~raa~------------e~ekk~~~e~~eq~q~meknl~~m~~e~ 215 (278)
+..++..++.++.+...++..| .|+. .-...++++|.||..-+..-+++
T Consensus 185 ~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~-~~~~~~~~~Q~le~~Rl~~lk~~ 245 (337)
T 2x3v_A 185 QKKLVDKVDKCRQDVQKTQEKYEKVLEDVGKTTPQYME-GMEQVFEQCQQFEEKRLVFLKEV 245 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555544332 2222 23456677788877655555433
No 183
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=60.18 E-value=60 Score=25.42 Aligned_cols=49 Identities=20% Similarity=0.327 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023697 101 DAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE 162 (278)
Q Consensus 101 e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d 162 (278)
|-..|+|-.+..+|..| ++.+|..+ .....+....+..|.+++..+...
T Consensus 2 Ek~~rdL~~~~~~L~~E---~e~~k~K~----------~~~~~e~~~~~~~Lq~El~~lr~~ 50 (111)
T 2v66_B 2 EQRNRDLQADNQRLKYE---VEALKEKL----------EHQYAQSYKQVSVLEDDLSQTRAI 50 (111)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHH---HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566774444444444 33333332 233444445555566665555544
No 184
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=59.84 E-value=22 Score=33.51 Aligned_cols=25 Identities=8% Similarity=0.100 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 134 DIEKLCVIKQEMIKDLNEINGDLAK 158 (278)
Q Consensus 134 ei~~l~~~rqeL~~evq~LekDL~~ 158 (278)
++..+.....+|..+++.++.++.+
T Consensus 11 ~~~~l~~~~~~l~~~~~~~~~~~~~ 35 (403)
T 4etp_A 11 KIAALKEKIAALKEKIKDTELGMKE 35 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 185
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=59.75 E-value=44 Score=23.70 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhh
Q 023697 166 MAAIKAEIETERQEIHKGRAAIE 188 (278)
Q Consensus 166 l~~LkaEIe~LrqEl~~~raa~e 188 (278)
+...+.||..|+..++.++..++
T Consensus 51 l~~~k~Ei~elrr~iq~L~~el~ 73 (77)
T 3trt_A 51 LRQAKQESTEYRRQVQSLTMEVD 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555444
No 186
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=59.43 E-value=1.1e+02 Score=28.06 Aligned_cols=36 Identities=11% Similarity=0.207 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-hhccHHHHHH
Q 023697 136 EKLCVIKQEMIKDLNEINGDLAKARD-ESKDMAAIKA 171 (278)
Q Consensus 136 ~~l~~~rqeL~~evq~LekDL~~~~~-d~~kl~~Lka 171 (278)
.++...|.++....+.|.+++.++.. +++-.|.|..
T Consensus 79 re~~~~Rd~~a~~k~~Le~~ierLs~pgg~~dprL~~ 115 (302)
T 3ibp_A 79 REAIVERDEVGARKNAVDEEIERLSQPGGSEDQRLNA 115 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 56777788888888888888888887 4666665443
No 187
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=59.39 E-value=1.1e+02 Score=28.14 Aligned_cols=20 Identities=15% Similarity=0.227 Sum_probs=13.9
Q ss_pred hhccHHHHHHHHHHHHHHHH
Q 023697 162 ESKDMAAIKAEIETERQEIH 181 (278)
Q Consensus 162 d~~kl~~LkaEIe~LrqEl~ 181 (278)
++..++.|+.+|+.++.++.
T Consensus 174 ~~~~I~~Lq~eI~~l~~~I~ 193 (346)
T 2nrj_A 174 QGADVDADQKRLEEVLGSVN 193 (346)
T ss_dssp TTCCHHHHHHHHHHHTGGGC
T ss_pred ccccHHHHHHHHHHHHHHHH
Confidence 34567777777777777776
No 188
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=59.31 E-value=48 Score=24.05 Aligned_cols=55 Identities=18% Similarity=0.143 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 023697 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKA 98 (278)
Q Consensus 44 ~~~Le~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~a 98 (278)
...|.+.|..-+.+|.++-....-.......|-.||-..--|-.+|+.++..+++
T Consensus 20 l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 20 LAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 4566666666666777665555555555666666666666666666666655443
No 189
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=59.08 E-value=7.3 Score=31.56 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHH
Q 023697 145 MIKDLNEINGDLAKARDESKDMAAIKAEIETERQE 179 (278)
Q Consensus 145 L~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqE 179 (278)
|.++|+.|.+|+.....=..++..|+.+|+.+++.
T Consensus 4 l~~~~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~ 38 (182)
T 3kqg_A 4 LNAQIPELKSDLEKASALNTKIRALQGSLENMSKL 38 (182)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555544444332233333444444444333
No 190
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=58.76 E-value=81 Score=26.46 Aligned_cols=49 Identities=14% Similarity=0.129 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHh
Q 023697 51 IAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAE 99 (278)
Q Consensus 51 L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae 99 (278)
+...-..++..-...+..+..+..|-.+.....+|++.-...+......
T Consensus 12 ve~v~~~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ 60 (170)
T 3l4q_C 12 VEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNET 60 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3333334555556667777888888888888888888888777764433
No 191
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=58.69 E-value=37 Score=24.63 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 132 RADIEKLCVIKQEMIKDLNEINGDLAK 158 (278)
Q Consensus 132 r~ei~~l~~~rqeL~~evq~LekDL~~ 158 (278)
+.++..+..+..+|..+++.+..++..
T Consensus 3 ~k~v~~l~~E~eel~~klk~~~ee~~~ 29 (71)
T 1uix_A 3 TSDVANLANEKEELNNKLKEAQEQLSR 29 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555444
No 192
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=58.43 E-value=56 Score=24.51 Aligned_cols=21 Identities=10% Similarity=0.180 Sum_probs=10.4
Q ss_pred hccHHHHHHHHHH-HHHHHHhh
Q 023697 163 SKDMAAIKAEIET-ERQEIHKG 183 (278)
Q Consensus 163 ~~kl~~LkaEIe~-LrqEl~~~ 183 (278)
.+||..-+.+|+. ++.+++++
T Consensus 71 ~~klr~Yk~dl~~~lk~~lk~l 92 (97)
T 3onj_A 71 KAKLREWKKTIQSDIKRPLQSL 92 (97)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555 55555444
No 193
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=58.35 E-value=41 Score=22.99 Aligned_cols=23 Identities=9% Similarity=0.281 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023697 131 VRADIEKLCVIKQEMIKDLNEIN 153 (278)
Q Consensus 131 lr~ei~~l~~~rqeL~~evq~Le 153 (278)
++.++..|...-.+|..+|..|+
T Consensus 27 Le~~~~~L~~~n~~L~~~i~~L~ 49 (61)
T 1t2k_D 27 LEKKAEDLSSLNGQLQSEVTLLR 49 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 194
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=58.33 E-value=22 Score=23.14 Aligned_cols=19 Identities=11% Similarity=0.371 Sum_probs=11.0
Q ss_pred HHHHHHHHhHHHHHHHHHH
Q 023697 199 EQREIMEKNIISVAQQIER 217 (278)
Q Consensus 199 eq~q~meknl~~m~~e~ek 217 (278)
..+|++||.|..+..-+..
T Consensus 27 selqalekklaalksklqa 45 (48)
T 1g6u_A 27 SELQALEKKLAALKSKLQA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3466777776666554433
No 195
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=58.09 E-value=55 Score=24.30 Aligned_cols=60 Identities=22% Similarity=0.300 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHH
Q 023697 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEI 180 (278)
Q Consensus 118 lr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl 180 (278)
.+..+.+-+||-.++-.+.++...|.+...++.+-..+|..++ .+|..=.+||+.|+.++
T Consensus 18 ~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq---~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 18 QRKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQ---EQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH---HHHHhhHHHHHHHHHHH
Confidence 4556677888888888888888877777666666554444433 23333334555554444
No 196
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=58.06 E-value=64 Score=25.10 Aligned_cols=43 Identities=9% Similarity=0.187 Sum_probs=33.0
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHH
Q 023697 164 KDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEK 206 (278)
Q Consensus 164 ~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~mek 206 (278)
.=+..|...|+..++.+..++..++.-+..-.+..-..+++|+
T Consensus 74 ~fi~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~ 116 (150)
T 3ajw_A 74 QFIQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQT 116 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3367778888888888888888888877777777777777764
No 197
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=58.05 E-value=54 Score=24.25 Aligned_cols=18 Identities=11% Similarity=0.239 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023697 136 EKLCVIKQEMIKDLNEIN 153 (278)
Q Consensus 136 ~~l~~~rqeL~~evq~Le 153 (278)
..|...+.+|..++..++
T Consensus 66 ~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 66 EELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444333
No 198
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=57.95 E-value=27 Score=24.49 Aligned_cols=40 Identities=18% Similarity=0.366 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhh
Q 023697 145 MIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGR 184 (278)
Q Consensus 145 L~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~r 184 (278)
+..+|...+.+|+-++.. +-.+.+|++|--.+|.|++--|
T Consensus 31 fekeiaafeselqaykgkgnpevealrkeaaairdelqayr 71 (73)
T 2a3d_A 31 FEKEIAAFESELQAYKGKGNPEVEALRKEAAAIRDELQAYR 71 (73)
T ss_dssp HHHHHHHHHHHHHHSSSCCSSTTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhh
Confidence 445677777777777777 6778899999988888887544
No 199
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=57.77 E-value=35 Score=30.60 Aligned_cols=14 Identities=21% Similarity=0.294 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 023697 76 KQELSLAEQELRHL 89 (278)
Q Consensus 76 ~qEL~laqhEL~~l 89 (278)
+.++..++.++.+.
T Consensus 90 ~~~~~~a~~~~~r~ 103 (369)
T 4dk0_A 90 KTAYDVALSNYQRL 103 (369)
T ss_dssp HHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 200
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=57.36 E-value=62 Score=24.75 Aligned_cols=69 Identities=17% Similarity=0.250 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 71 THVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLN 150 (278)
Q Consensus 71 ~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq 150 (278)
.+.-|+++|..++.-|+..+.....-...- +.-.+.+++|..+ -++-....++|..+|.
T Consensus 19 vT~lLq~qLT~Aq~~l~~~eaQAaTCNqTV-----------------~tL~~SL~kekaq----~q~qq~~v~elqgEI~ 77 (99)
T 3ni0_A 19 TTHLLQRQLTRTQDSLLQAETQANSCNLTV-----------------VTLQESLEKKVSQ----ALEQQARIKELENEVT 77 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHh----hHHHHHHHHHHHHHHH
Confidence 445677788888877777665555333222 1113333333322 3333345666777777
Q ss_pred HHHHHHHHHh
Q 023697 151 EINGDLAKAR 160 (278)
Q Consensus 151 ~LekDL~~~~ 160 (278)
.|.+.|++..
T Consensus 78 ~Lnq~Lqda~ 87 (99)
T 3ni0_A 78 KLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7776666644
No 201
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=57.18 E-value=49 Score=30.10 Aligned_cols=127 Identities=13% Similarity=0.251 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHH---HHHHHhhhhHHHHHHHHHH
Q 023697 48 EDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVR---ELYEKSLKLDAELRVIESM 124 (278)
Q Consensus 48 e~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r---~l~~k~~kleaelr~~e~l 124 (278)
-.+|...|.+.+....+-+++.+++..+.|||+..+.-+.-....+.=.+---+.|-| +++|+- + .++-
T Consensus 17 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~af~~~~~~f~~q~~~qe~~~~~~~~~~-~-------~~~~ 88 (302)
T 2y3a_B 17 GAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKCSKEYLERF-R-------REGN 88 (302)
T ss_dssp ----CCCSSCCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC--------------CT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-H-------hcCC
Confidence 3444444445666667777788888888888777666555554444422221111111 000000 1 1222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhh
Q 023697 125 HAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRA 185 (278)
Q Consensus 125 k~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~ra 185 (278)
..|+..+..-.+.+....+.|-.-...++.||.-...|.-+| ..++.+++-++-.++.
T Consensus 89 ~~e~~~~~~n~e~l~~rl~aL~~~~~~~~~eLsf~kgd~~~i---er~ln~~~pdw~~l~k 146 (302)
T 2y3a_B 89 EKEMQRILLNSERLKSRIAEIHESRTKLEQDLRAQASDNREI---DKRMNSLKPDLMQLRK 146 (302)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhhcchhhhhhhhhHHHhH---HhhhccCChHHHHHhh
Confidence 346666666666666666666666666666666544443332 3344444444444443
No 202
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=57.06 E-value=36 Score=25.79 Aligned_cols=20 Identities=5% Similarity=-0.157 Sum_probs=7.8
Q ss_pred HHHHHhhhhhHhHHHHHHHH
Q 023697 88 HLSSVAASVKAERDAEVREL 107 (278)
Q Consensus 88 ~l~~~i~~~~ae~e~~~r~l 107 (278)
.|+..+...+..-+.+++.+
T Consensus 23 ~LE~~l~e~E~~~~~e~~~~ 42 (95)
T 3mov_A 23 ACLERIQELEDLLAKEKDNS 42 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344443333333333333
No 203
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=57.03 E-value=65 Score=24.82 Aligned_cols=48 Identities=25% Similarity=0.493 Sum_probs=20.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 104 VRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAK 158 (278)
Q Consensus 104 ~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~ 158 (278)
-|.|-+-.++|...-|.+.+-.+|+.++.. ...+|..++=-|+.++.+
T Consensus 54 Tr~lQqh~aRlnsqQrQI~ENhkEMKq~aa-------qsaaLlsk~yh~ene~ar 101 (114)
T 2xzr_A 54 TRTLQQHSARLDSQQRQINENHKEMKQIED-------KIEEILSKIYHIENEIAR 101 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------HHHHHHHHhhHHHHHHHH
Confidence 333433444444444444444444444444 444444444444444443
No 204
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=56.87 E-value=32 Score=25.43 Aligned_cols=29 Identities=7% Similarity=0.162 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 121 IESMHAELDRVRADIEKLCVIKQEMIKDL 149 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~ev 149 (278)
+..++..|..++.+++.-...+..+..++
T Consensus 22 N~~Le~~v~~le~~Le~s~~~q~~~~~El 50 (79)
T 3cvf_A 22 NAELEHQLRAMERSLEEARAERERARAEV 50 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333333333333
No 205
>2oee_A UPF0342 protein YHEA; MCSG, structural genomics, PSI-2, protein structure in midwest center for structural genomics, unknown function; HET: MSE; 1.96A {Bacillus subtilis} SCOP: a.281.1.2
Probab=56.67 E-value=24 Score=27.00 Aligned_cols=82 Identities=10% Similarity=0.178 Sum_probs=46.1
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cHHHHHHHHHHHHHHHHhhh
Q 023697 106 ELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESK-DMAAIKAEIETERQEIHKGR 184 (278)
Q Consensus 106 ~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~-kl~~LkaEIe~LrqEl~~~r 184 (278)
.++|++-.|...|+..++++ .+..+...+.. ...-+.|-.+.+.+..++..++.-++ -.++...++..+..++..--
T Consensus 4 ~I~d~A~eL~~~I~~s~ey~-~~~~a~~~i~~-d~ea~~l~~~f~~~q~~~~~~q~~G~~~~~e~~~~~~~l~~~i~~~p 81 (117)
T 2oee_A 4 NFYDVAYDLENALRGSEEFT-RLKNLYDEVNA-DESAKRMFENFRDVQLRLQQKQMAGEEITQEEVTQAQKTVALVQQHE 81 (117)
T ss_dssp CHHHHHHHHHHHHHTSHHHH-HHHHHHHHHHH-SHHHHHHHHHHHHHCC------------------CHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHHhCHHHH-HHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCH
Confidence 37888888888888888886 77777777654 34455666667777777777665454 33566777777777777665
Q ss_pred hhhhh
Q 023697 185 AAIEC 189 (278)
Q Consensus 185 aa~e~ 189 (278)
...+|
T Consensus 82 ~v~~y 86 (117)
T 2oee_A 82 KISQL 86 (117)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 206
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=56.63 E-value=93 Score=26.51 Aligned_cols=21 Identities=5% Similarity=0.047 Sum_probs=13.5
Q ss_pred hchhhHHHHHHHHHhHHHHHH
Q 023697 193 NRASNHEQREIMEKNIISVAQ 213 (278)
Q Consensus 193 ~~~e~~eq~q~meknl~~m~~ 213 (278)
.-.+.++.+|.||...+..-+
T Consensus 196 ~~~~~~~~lQ~le~~R~~~lk 216 (276)
T 2v0o_A 196 KMTETAQKFQDIEETHLIHIK 216 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777776665544
No 207
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=56.33 E-value=82 Score=25.82 Aligned_cols=16 Identities=25% Similarity=0.160 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHh
Q 023697 167 AAIKAEIETERQEIHK 182 (278)
Q Consensus 167 ~~LkaEIe~LrqEl~~ 182 (278)
..++++++.|..++++
T Consensus 90 a~l~~~~~~LeAE~aK 105 (146)
T 2xnx_M 90 DQLSSEKEQLTIEKAK 105 (146)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHH
Confidence 3344444444444433
No 208
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=55.60 E-value=65 Score=24.38 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 023697 45 HHLEDRIAIQHSDIQSLLQDNQ 66 (278)
Q Consensus 45 ~~Le~~L~~q~~eIq~ll~dnq 66 (278)
...|........+|.+.+....
T Consensus 8 e~YE~df~~l~~~i~~kl~~i~ 29 (102)
T 1vcs_A 8 EGYEQDFAVLTAEITSKIARVP 29 (102)
T ss_dssp CCSHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3456777777777766666533
No 209
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=55.48 E-value=60 Score=23.98 Aligned_cols=39 Identities=10% Similarity=0.231 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLA 157 (278)
Q Consensus 119 r~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~ 157 (278)
..++.++.||..||..++++.-....+...-..+-.||.
T Consensus 27 ~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 27 QQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555444444443
No 210
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=55.06 E-value=1.4e+02 Score=27.92 Aligned_cols=52 Identities=8% Similarity=0.195 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023697 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAAS 95 (278)
Q Consensus 44 ~~~Le~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~ 95 (278)
+..+..+......+...+-.+..+...+...-++-+++-..-+.+.+.++..
T Consensus 128 l~e~~~~~~~~~~~~~~~~~~~~~~~~e~~~k~~a~~af~~~~~~f~~q~~~ 179 (373)
T 3hhm_B 128 LHEYNTQFQEKSREYDRLYEEYTRTSQEIQMKRTAIEAFNETIKIFEEQCQT 179 (373)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555566666666666666655556665555555555554433
No 211
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=54.96 E-value=37 Score=27.04 Aligned_cols=44 Identities=20% Similarity=0.207 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHH--hhhhccHHHHHHHHHHHHHHHHhhhhhhhhh
Q 023697 147 KDLNEINGDLAKA--RDESKDMAAIKAEIETERQEIHKGRAAIECE 190 (278)
Q Consensus 147 ~evq~LekDL~~~--~~d~~kl~~LkaEIe~LrqEl~~~raa~e~e 190 (278)
..+..+..-+.-+ +.|.-.+..+..|++.|..+|.+++..-.++
T Consensus 17 drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q~~~ 62 (123)
T 2lf0_A 17 DRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQK 62 (123)
T ss_dssp HHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444333 3457889999999999999999998776554
No 212
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=54.64 E-value=29 Score=20.95 Aligned_cols=25 Identities=20% Similarity=0.415 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 131 VRADIEKLCVIKQEMIKDLNEINGD 155 (278)
Q Consensus 131 lr~ei~~l~~~rqeL~~evq~LekD 155 (278)
++.++.+|.+..|+|...+.+|+.-
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666644
No 213
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=53.68 E-value=45 Score=28.55 Aligned_cols=49 Identities=12% Similarity=0.186 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023697 46 HLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAA 94 (278)
Q Consensus 46 ~Le~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~ 94 (278)
.++++|..-+..|+.+..+|..|..+.....+|+...+.+|..++....
T Consensus 10 ~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 10 SVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5677777777789999998888887777777777777777666666554
No 214
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=53.54 E-value=29 Score=26.00 Aligned_cols=22 Identities=9% Similarity=0.264 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023697 121 IESMHAELDRVRADIEKLCVIK 142 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~r 142 (278)
+..|+.+|.+|..++..|....
T Consensus 52 N~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 52 NERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554443
No 215
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=52.83 E-value=50 Score=22.30 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 125 HAELDRVRADIEKLCVIKQEMIKDLNEINGDLA 157 (278)
Q Consensus 125 k~El~qlr~ei~~l~~~rqeL~~evq~LekDL~ 157 (278)
+.++.++.+.-.+|....++...+|..|..+|.
T Consensus 15 ~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 15 EARIDSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443333
No 216
>3v47_C Flagellin; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Salmonella enterica subsp}
Probab=52.57 E-value=42 Score=32.15 Aligned_cols=77 Identities=12% Similarity=0.148 Sum_probs=50.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hccHHHHHHHHHHHHHHHHhhhhh
Q 023697 110 KSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE---SKDMAAIKAEIETERQEIHKGRAA 186 (278)
Q Consensus 110 k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d---~~kl~~LkaEIe~LrqEl~~~raa 186 (278)
.+.+|.++++.++....-+....+-++.......+...-+++|..=.-...++ ......+..||+.|+.||.+.-..
T Consensus 9 Ia~~lrsqi~gl~Qa~rN~~dgiS~lqtAEgAL~~i~~iLqRmRELaVQAaNgT~s~~DR~aIq~Ei~qL~~eI~~Ian~ 88 (425)
T 3v47_C 9 IANRFTSNIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSNQ 88 (425)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45678888999999999999999999999999999888888877555554443 356789999999999999988753
No 217
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=52.25 E-value=38 Score=25.00 Aligned_cols=12 Identities=8% Similarity=0.401 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 023697 146 IKDLNEINGDLA 157 (278)
Q Consensus 146 ~~evq~LekDL~ 157 (278)
..++..+..||.
T Consensus 41 E~el~~~r~e~~ 52 (86)
T 1x8y_A 41 EREMAEMRARMQ 52 (86)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 218
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=52.12 E-value=1.7e+02 Score=28.38 Aligned_cols=18 Identities=11% Similarity=0.449 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHhH
Q 023697 208 IISVAQQIERLQAELANA 225 (278)
Q Consensus 208 l~~m~~e~eklrael~n~ 225 (278)
+....+.|.+|+..+..-
T Consensus 172 ~~~~~~~i~~l~~~~~~~ 189 (461)
T 3ghg_B 172 LENLRSKIQKLESDVSAQ 189 (461)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 333444555555555433
No 219
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=52.04 E-value=1.2e+02 Score=26.50 Aligned_cols=66 Identities=15% Similarity=0.325 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhh
Q 023697 118 LRVIESMHAELDRVRADIEKLCVIKQEM-I----KDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKG 183 (278)
Q Consensus 118 lr~~e~lk~El~qlr~ei~~l~~~rqeL-~----~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~ 183 (278)
+..++.+...|..+...+.+|....+.. . .....+..+|.....+ .+.+..++..|+.|.....+.
T Consensus 47 ~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~ 118 (279)
T 2xhe_B 47 FNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRA 118 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5556666666666666666665554321 1 1122345555555444 444555666666665555444
No 220
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=51.98 E-value=1.6e+02 Score=27.98 Aligned_cols=102 Identities=12% Similarity=0.124 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHH--------
Q 023697 44 LHHLEDRIAIQHSDIQSLLQ------DNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYE-------- 109 (278)
Q Consensus 44 ~~~Le~~L~~q~~eIq~ll~------dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~-------- 109 (278)
-+.||..|+++...|..+.. ....+...+..|..-...-++.|..|...+.....+. .-|++--.
T Consensus 44 H~~lE~eI~a~~~~v~~l~~~a~~~~~~~~L~~~y~~L~~~a~~Rr~~Le~L~qFl~d~~ee~-~Wi~EKe~~~~s~d~g 122 (450)
T 3r6n_A 44 HRGIHNSIGDYRWQLDKIKADLREKSAIYQLEEEYENLLKASFERMDHLRQLQNIIQATSREI-MWINDCEEEELLYDWS 122 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccC
Confidence 45566666666666655543 2344555565665555555555655554444433332 11221100
Q ss_pred -HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 110 -KSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMI 146 (278)
Q Consensus 110 -k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~ 146 (278)
...-+.+-+++.+.++.||..-+..+..+...-+.|.
T Consensus 123 d~l~dv~~l~~khq~l~~EL~~~e~~i~~v~~~G~~Li 160 (450)
T 3r6n_A 123 DKNTNIAQKQEAFSIRMSQLEVKEKELNKLKQESDQLV 160 (450)
T ss_dssp TTCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhhHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHH
Confidence 1111333456666777777666666666666555554
No 221
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=51.97 E-value=1e+02 Score=25.47 Aligned_cols=52 Identities=15% Similarity=0.226 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhh
Q 023697 136 EKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAI 187 (278)
Q Consensus 136 ~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~ 187 (278)
.......+.|+.++..++..|..+.-+.-.-..++++++.++.++..++...
T Consensus 72 ~sA~~~~d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~ 123 (158)
T 3tul_A 72 DTAKSVYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEAL 123 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666777777777777665556677777777777766555443
No 222
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=51.14 E-value=99 Score=25.20 Aligned_cols=79 Identities=16% Similarity=0.222 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------hhccHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 023697 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARD----------ESKDMAAIKAEIETERQEIHKGRAAIECEKK 192 (278)
Q Consensus 123 ~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~----------d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk 192 (278)
.++.+|..+..++..+... +...++.|+++..+... --.+...|...+..+=.+.+.++..|...-|
T Consensus 78 ~~k~~le~l~~~i~~~a~~---ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~K 154 (180)
T 1s94_A 78 QMKEELEELMTDIKRTANK---VRGKLKTIELNIEQEEHSNKSSADLRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCK 154 (180)
T ss_dssp -CHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHTC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554433 33445555555443311 0235577777888888888888877777766
Q ss_pred hchhhHHHHHHHHH
Q 023697 193 NRASNHEQREIMEK 206 (278)
Q Consensus 193 ~~~e~~eq~q~mek 206 (278)
..+. -|...+-.
T Consensus 155 ~~i~--Rq~~I~~~ 166 (180)
T 1s94_A 155 ARIK--RQMEITGR 166 (180)
T ss_dssp CC------------
T ss_pred HHHH--HHHHHhCC
Confidence 6664 35554433
No 223
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=51.08 E-value=22 Score=31.77 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKA 159 (278)
Q Consensus 124 lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~ 159 (278)
++.++.++......|....+++..++..|..++.++
T Consensus 59 L~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 59 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444444444443
No 224
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=50.74 E-value=57 Score=22.35 Aligned_cols=30 Identities=13% Similarity=0.295 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDL 156 (278)
Q Consensus 127 El~qlr~ei~~l~~~rqeL~~evq~LekDL 156 (278)
.+..++.++..|.....+|..+|..|+.++
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444433
No 225
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=50.24 E-value=30 Score=21.38 Aligned_cols=25 Identities=8% Similarity=0.041 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 130 RVRADIEKLCVIKQEMIKDLNEING 154 (278)
Q Consensus 130 qlr~ei~~l~~~rqeL~~evq~Lek 154 (278)
|+...+++|.....+|+.+|.++.+
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5555666666666666666666553
No 226
>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium} SCOP: e.32.1.1 PDB: 3a5x_A
Probab=50.11 E-value=1.3e+02 Score=29.03 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh----HhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 75 LKQELSLAEQELRHLSSVAASVK----AERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLN 150 (278)
Q Consensus 75 L~qEL~laqhEL~~l~~~i~~~~----ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq 150 (278)
..+.|...+..|..+..++.+-+ +.-|- .-+..+.+|.++++.++....-+.....-++.......+...-++
T Consensus 13 ~~~~l~~~~~~l~~~~~~lSSG~rIn~asDDp---ag~aia~~l~~~i~~l~q~~~N~~~~~s~lqtae~aL~~i~~~Lq 89 (494)
T 1ucu_A 13 TQNNLNKSQSALGTAIERLSSGLRINSAKDDA---AGQAIANRFTANIKGLTQASRNANDGISIAQTTEGALNEINNNLQ 89 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCTTTSCSSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCccCCccccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666665311 00000 023456688888999999999999999999999999999998888
Q ss_pred HHHHHHHHHhhh---hccHHHHHHHHHHHHHHHHhhhhh
Q 023697 151 EINGDLAKARDE---SKDMAAIKAEIETERQEIHKGRAA 186 (278)
Q Consensus 151 ~LekDL~~~~~d---~~kl~~LkaEIe~LrqEl~~~raa 186 (278)
++..-.-....+ ......+..||+.|+.||.+.-..
T Consensus 90 r~relavqaangt~s~~dr~ai~~Ei~~l~~ei~~ian~ 128 (494)
T 1ucu_A 90 RVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQ 128 (494)
T ss_dssp HHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888666555443 356788999999999999997764
No 227
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=50.04 E-value=1.9e+02 Score=28.22 Aligned_cols=32 Identities=9% Similarity=0.138 Sum_probs=20.5
Q ss_pred HHHHHhHHHHHH---------HHHHHHHHHHhH-HhhHHHHH
Q 023697 202 EIMEKNIISVAQ---------QIERLQAELANA-EKRARAAA 233 (278)
Q Consensus 202 q~meknl~~m~~---------e~eklrael~n~-~~r~~a~~ 233 (278)
+.|=+||..+.+ -+.+++.++-++ +.--|.+-
T Consensus 504 ~dmAkNL~kfSKaFg~tgKvIka~DV~eK~kkG~ETGNWrPL 545 (602)
T 1cii_A 504 SDISSNLNRFSRGLGYAGKFTSLADWITEFGKAVRTENWRPL 545 (602)
T ss_dssp HHHHHHHHHHHHHHTCCSCBCCHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhcCCCchhH
Confidence 347788877766 567777777555 44455554
No 228
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=49.82 E-value=48 Score=21.62 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 118 LRVIESMHAELDRVRADIEKLCVIKQEMIK 147 (278)
Q Consensus 118 lr~~e~lk~El~qlr~ei~~l~~~rqeL~~ 147 (278)
++.++-+-.||...+..|.+++...++|..
T Consensus 8 ~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 8 IQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555555555555443
No 229
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=49.78 E-value=75 Score=23.39 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=7.0
Q ss_pred HHHHHHHHHhhhhhHhH
Q 023697 84 QELRHLSSVAASVKAER 100 (278)
Q Consensus 84 hEL~~l~~~i~~~~ae~ 100 (278)
..++.++..+...++++
T Consensus 27 ~~v~~le~~Le~s~~~q 43 (79)
T 3cvf_A 27 HQLRAMERSLEEARAER 43 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 230
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=49.63 E-value=67 Score=23.83 Aligned_cols=59 Identities=10% Similarity=0.189 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhh
Q 023697 126 AELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAI 187 (278)
Q Consensus 126 ~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~ 187 (278)
.++..++.+|.+|...--+...++..|-.| +=.+=.+|+++-++.-..-+++..++..+
T Consensus 15 ~di~eLkkevkKL~~~A~q~kmdLHDLaEd---LP~~w~~i~~vA~~tyda~~~l~~ak~~L 73 (81)
T 3csx_A 15 EAVADLKKKVRKLNSKAGQMKMDLHDLAEG---LPTDYENLVETAEKTYEIFRELDQLKKKL 73 (81)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHH---TTTTGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777777777777777777766 44455677777666555555555544443
No 231
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=49.43 E-value=1.2e+02 Score=25.69 Aligned_cols=32 Identities=9% Similarity=0.067 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 125 HAELDRVRADIEKLCVIKQEMIKDLNEINGDL 156 (278)
Q Consensus 125 k~El~qlr~ei~~l~~~rqeL~~evq~LekDL 156 (278)
...+..++..++.+....+.|..+.....++|
T Consensus 85 ~~~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~ 116 (192)
T 2p22_C 85 FEDLHEQKDKVQALLENARILESKYVASWQDY 116 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443333333
No 232
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=49.41 E-value=1.7e+02 Score=29.25 Aligned_cols=59 Identities=10% Similarity=0.124 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHH
Q 023697 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQE 179 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqE 179 (278)
.+.+...|...+.+++++...++.=...++...+.|+.+..| .++|..+++.++.+...
T Consensus 632 ~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 691 (695)
T 2j69_A 632 SKRINDDIVSRKSELDNLVKQKQTREINRESEFNRLKNLQEDVIAQLQKIEAAYSNLLAY 691 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 345566666777777777777776666666666666666666 67777777777666543
No 233
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=49.31 E-value=70 Score=31.07 Aligned_cols=29 Identities=7% Similarity=0.019 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 128 LDRVRADIEKLCVIKQEMIKDLNEINGDL 156 (278)
Q Consensus 128 l~qlr~ei~~l~~~rqeL~~evq~LekDL 156 (278)
|..+-.+-.++.....+|.++...+.+++
T Consensus 39 ~~~ld~~~r~~~~~~~~l~~~rN~~sk~i 67 (484)
T 3lss_A 39 IIEADKKWRRTQFLTEASKKLINICSKAV 67 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 234
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=49.18 E-value=54 Score=21.57 Aligned_cols=35 Identities=9% Similarity=0.222 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDL 156 (278)
Q Consensus 122 e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL 156 (278)
..++++-.|+.-+-+.|......|..+|.+|+.++
T Consensus 13 arlkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 13 ARLKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 33444444455554555444444445555544443
No 235
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=49.16 E-value=1.4e+02 Score=26.36 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023697 66 QRLAATHVALKQELSLAEQELRHLSSVAASV 96 (278)
Q Consensus 66 qrla~~~~~L~qEL~laqhEL~~l~~~i~~~ 96 (278)
+++-..|.+|+.||..-+..+..+......+
T Consensus 44 ~~~~~kh~~le~El~a~e~~v~~v~~~g~~L 74 (283)
T 3pe0_A 44 TAKKESYSALMRELELKEKKIKELQNAGDRL 74 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3445558888888888777776665555543
No 236
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=49.10 E-value=89 Score=24.06 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=17.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 112 LKLDAELRVIESMHAELDRVRADIEKLCV 140 (278)
Q Consensus 112 ~kleaelr~~e~lk~El~qlr~ei~~l~~ 140 (278)
+|++.....++.++.||..-..+++.+..
T Consensus 47 ~k~~eq~~~le~lk~eL~~~~~el~~lq~ 75 (107)
T 2no2_A 47 RKTQEQLEVLESLKQELATSQRELQVLQG 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566667777666666666555333
No 237
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=49.05 E-value=73 Score=23.04 Aligned_cols=56 Identities=13% Similarity=0.213 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhh
Q 023697 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRA 185 (278)
Q Consensus 127 El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~ra 185 (278)
++..++.+|.+|.+.-.+...++..|..| +=.+=.+|+++-++.=..-+++..+++
T Consensus 4 di~eLkkevkKL~~~A~q~kmdLHDLaEd---LP~~w~~i~~vA~~tyda~~~l~~ak~ 59 (71)
T 2js5_A 4 GAEELKAKLKKLNAQATALKMDLHDLAED---LPTGWNRIMEVAEKTYEAYRQLDEFRK 59 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHS---TTTSGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHhcc---chhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666655 334456777766655444444444443
No 238
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=48.92 E-value=48 Score=20.88 Aligned_cols=28 Identities=11% Similarity=0.179 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 129 DRVRADIEKLCVIKQEMIKDLNEINGDL 156 (278)
Q Consensus 129 ~qlr~ei~~l~~~rqeL~~evq~LekDL 156 (278)
-|+...+++|.....+|..+|.+|..=+
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3555566666666666666666665443
No 239
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=48.64 E-value=2e+02 Score=27.93 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 133 ADIEKLCVIKQEMIKDLNEINGDLA 157 (278)
Q Consensus 133 ~ei~~l~~~rqeL~~evq~LekDL~ 157 (278)
..|.-|......+..+|++||.|+.
T Consensus 132 ~~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 132 NRIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555666666666654
No 240
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=48.54 E-value=59 Score=28.75 Aligned_cols=21 Identities=14% Similarity=0.460 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhh
Q 023697 168 AIKAEIETERQEIHKGRAAIE 188 (278)
Q Consensus 168 ~LkaEIe~LrqEl~~~raa~e 188 (278)
.++++++.++.++..++..++
T Consensus 132 ~~~a~l~~a~a~l~~a~~~l~ 152 (341)
T 3fpp_A 132 TIDAQIKRNQASLDTAKTNLD 152 (341)
T ss_dssp HHHHHHHHTHHHHTTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 344444555555555554443
No 241
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=48.38 E-value=39 Score=22.26 Aligned_cols=33 Identities=30% Similarity=0.430 Sum_probs=14.0
Q ss_pred hhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 023697 191 KKNRASNHEQREIMEKNIISVAQQIERLQAELA 223 (278)
Q Consensus 191 kk~~~e~~eq~q~meknl~~m~~e~eklrael~ 223 (278)
||.+..+-.--|-+||=+..+--||-.|.-|++
T Consensus 16 kkdnlqlerdeqnlekiianlrdeiarleneva 48 (52)
T 3he5_B 16 KKDNLQLERDEQNLEKIIANLRDEIARLENEVA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHh
Confidence 333333333334444444444444444444443
No 242
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=48.27 E-value=52 Score=30.97 Aligned_cols=7 Identities=14% Similarity=0.264 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 023697 170 KAEIETE 176 (278)
Q Consensus 170 kaEIe~L 176 (278)
..+|..|
T Consensus 51 ~n~~~el 57 (403)
T 4etp_A 51 HNELQEL 57 (403)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 3333333
No 243
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=47.85 E-value=60 Score=21.76 Aligned_cols=25 Identities=20% Similarity=0.217 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 131 VRADIEKLCVIKQEMIKDLNEINGD 155 (278)
Q Consensus 131 lr~ei~~l~~~rqeL~~evq~LekD 155 (278)
.+.+++.+......+..++..+..+
T Consensus 24 ~~~~~~~~k~~~~~~~~~l~~~~~~ 48 (60)
T 3htk_A 24 KTDEFLKAKEKINEIFEKLNTIRDE 48 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 244
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=47.85 E-value=6.1 Score=31.92 Aligned_cols=73 Identities=12% Similarity=0.094 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhch
Q 023697 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRA 195 (278)
Q Consensus 123 ~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~ 195 (278)
.+-.||.+.+..+......++.|..++..+++++.-+.++ ...-..+...++.|+=+.+.+++++.-|...-.
T Consensus 6 SL~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaalkmEr~~~~ 79 (130)
T 3cl3_D 6 GSLGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAAS 79 (130)
T ss_dssp ---------------------------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446888888888888888999999999999888887777 443445677888898899999999888876543
No 245
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=47.80 E-value=35 Score=21.15 Aligned_cols=24 Identities=13% Similarity=0.307 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 130 RVRADIEKLCVIKQEMIKDLNEIN 153 (278)
Q Consensus 130 qlr~ei~~l~~~rqeL~~evq~Le 153 (278)
|+...+++|.....+|..+|.+|.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344445555555555555555544
No 246
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=47.75 E-value=84 Score=23.39 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=30.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023697 57 DIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAA 94 (278)
Q Consensus 57 eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~ 94 (278)
-+..-|.+|..|......++.+++..+.++..|..-+.
T Consensus 32 AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~ 69 (83)
T 1wlq_A 32 ALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAE 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999988888898888888888766555
No 247
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=47.67 E-value=35 Score=20.52 Aligned_cols=9 Identities=0% Similarity=0.416 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 023697 145 MIKDLNEIN 153 (278)
Q Consensus 145 L~~evq~Le 153 (278)
|..+|.+|+
T Consensus 20 leqevaqle 28 (33)
T 1fmh_A 20 LEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333344333
No 248
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=47.13 E-value=21 Score=28.37 Aligned_cols=37 Identities=14% Similarity=0.232 Sum_probs=29.7
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHH
Q 023697 164 KDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQ 200 (278)
Q Consensus 164 ~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq 200 (278)
++...|..+|..++.+|..++.++.|+++..-+.++.
T Consensus 7 ~~~~~L~~~i~~l~~~L~~lkqa~k~~~~~~~~eL~~ 43 (122)
T 3viq_A 7 SRRLKLEKEVRNLQEQLITAETARKVEAKNEDKDLQT 43 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 3456788889999999999999999999998655443
No 249
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=46.87 E-value=1.1e+02 Score=24.29 Aligned_cols=59 Identities=8% Similarity=0.121 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhh
Q 023697 132 RADIEKLCVIKQEMIKDLNEINGDL--AKARDE-SKDMAAIKAEIETERQEIHKGRAAIECE 190 (278)
Q Consensus 132 r~ei~~l~~~rqeL~~evq~LekDL--~~~~~d-~~kl~~LkaEIe~LrqEl~~~raa~e~e 190 (278)
...+.+....+..+...+..|.+.- .-|... ...++.++..+..|..+|......|++-
T Consensus 40 ~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~~keLd~~ik~qekiIdnF 101 (119)
T 3etw_A 40 RQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDALKKLEAEMEQQKAVISDF 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444321 113334 5666666666777777777777666553
No 250
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=46.73 E-value=30 Score=31.05 Aligned_cols=11 Identities=27% Similarity=0.437 Sum_probs=4.6
Q ss_pred HHHHHHHHHhH
Q 023697 215 IERLQAELANA 225 (278)
Q Consensus 215 ~eklrael~n~ 225 (278)
++.+++++..+
T Consensus 138 l~~~~~~l~~a 148 (369)
T 4dk0_A 138 IKQAEIEVNTA 148 (369)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 251
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=46.48 E-value=90 Score=23.36 Aligned_cols=37 Identities=22% Similarity=0.424 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLA 157 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~ 157 (278)
++....++..++.++..+.....++..++..++.++.
T Consensus 66 i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 66 LSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555544444
No 252
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=46.37 E-value=1.3e+02 Score=25.34 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=27.0
Q ss_pred hhchhhHHHHHHHHHhHHHHHHHH---HHHHHHHHhHH
Q 023697 192 KNRASNHEQREIMEKNIISVAQQI---ERLQAELANAE 226 (278)
Q Consensus 192 k~~~e~~eq~q~meknl~~m~~e~---eklrael~n~~ 226 (278)
....+++++.+.|-..+..|+.+. |.+=+||..+-
T Consensus 107 Ell~eL~~~Ck~~qp~i~~Li~e~~ddee~L~elL~~N 144 (186)
T 1oxz_A 107 DLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQAN 144 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhh
Confidence 466789999999999999999865 45556666554
No 253
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=46.28 E-value=1.1e+02 Score=24.26 Aligned_cols=42 Identities=12% Similarity=0.124 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023697 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE 162 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d 162 (278)
.+.+.++|.+++.-+..|......+...+...++++..|+.|
T Consensus 90 ~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~ 131 (142)
T 3gp4_A 90 RIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDFNVE 131 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Confidence 344444444444444455555555555556666666666665
No 254
>3n27_A Fusion glycoprotein F0, linker, fusion glycoprote; fusion protein, chimera protein, fusion inhibitor, antivirus viral protein; HET: CIT; 1.80A {Hendravirus}
Probab=46.14 E-value=73 Score=23.54 Aligned_cols=70 Identities=11% Similarity=0.250 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h-hccHHHHHHHHHHHHHHHHhhhhhhh
Q 023697 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARD-E-SKDMAAIKAEIETERQEIHKGRAAIE 188 (278)
Q Consensus 119 r~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~-d-~~kl~~LkaEIe~LrqEl~~~raa~e 188 (278)
+.+..||.-|+.-..-|.++....+.+.--|+.+..-++.-.. | .-.|...+..++.-|.+|.+.|..++
T Consensus 6 ~~I~~LK~SIq~TN~AV~eL~~a~~~t~iAIqaIQd~IN~~~~~dis~~l~~a~~~l~~sk~~~~~~~~~~~ 77 (80)
T 3n27_A 6 DNINKLKSSIESTNEAVVKLQETAEKTVYVLTALQDYSGGSGGIDISIELNKAKSDLEESKEWIRRSNQKLD 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhhHhHHHhhHHHHHHHHHHHHHHhh
Confidence 4567777777777777777777777777777777766555432 2 34466777777888888877776543
No 255
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=46.01 E-value=7.3 Score=28.52 Aligned_cols=33 Identities=12% Similarity=0.060 Sum_probs=29.2
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhh
Q 023697 165 DMAAIKAEIETERQEIHKGRAAIECEKKNRASN 197 (278)
Q Consensus 165 kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~ 197 (278)
.......+|..|+.|+.+++..+++.|++..++
T Consensus 60 ~~~~~~~ei~~L~~e~~~L~~e~~~Lkk~~~~~ 92 (97)
T 2jn6_A 60 AAVSEAEQIRQLKKENALQRARTRHPAESCLEH 92 (97)
T ss_dssp HHHHTHHHHHHHHHCGGGGGGTTSCCCGGGGTS
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355678899999999999999999999998875
No 256
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=45.44 E-value=84 Score=22.71 Aligned_cols=16 Identities=13% Similarity=0.096 Sum_probs=10.4
Q ss_pred hhhhhhchhhHHHHHH
Q 023697 188 ECEKKNRASNHEQREI 203 (278)
Q Consensus 188 e~ekk~~~e~~eq~q~ 203 (278)
.|||+.+.|.+=..||
T Consensus 43 ~lek~L~~E~~LK~QA 58 (71)
T 1s1c_X 43 AFEKNINTERTLKTQA 58 (71)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5667777666666665
No 257
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=45.43 E-value=26 Score=26.64 Aligned_cols=38 Identities=11% Similarity=0.232 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 023697 121 IESMHAELDRVRADIEKLCVIKQ-EMIKDLNEINGDLAK 158 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rq-eL~~evq~LekDL~~ 158 (278)
.+.+|+|...+-.+.......+. ++..+|.+--.||+.
T Consensus 16 LD~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~ 54 (92)
T 3vp9_A 16 LDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQ 54 (92)
T ss_dssp -CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 45566666666666555554443 555554444444443
No 258
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=45.17 E-value=62 Score=30.59 Aligned_cols=35 Identities=17% Similarity=0.290 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDL 156 (278)
Q Consensus 122 e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL 156 (278)
..|+.|+..++..++++....+++.++++.++..|
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l 40 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQL 40 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555554444433
No 259
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=44.42 E-value=21 Score=35.32 Aligned_cols=12 Identities=33% Similarity=0.609 Sum_probs=6.6
Q ss_pred HHHHHHHHHHhH
Q 023697 214 QIERLQAELANA 225 (278)
Q Consensus 214 e~eklrael~n~ 225 (278)
.+-.|+.||+.+
T Consensus 519 qL~~L~~el~~~ 530 (575)
T 2i1j_A 519 QLKALKQDLARS 530 (575)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 445556666554
No 260
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=44.41 E-value=1e+02 Score=23.47 Aligned_cols=19 Identities=5% Similarity=0.148 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 023697 143 QEMIKDLNEINGDLAKARD 161 (278)
Q Consensus 143 qeL~~evq~LekDL~~~~~ 161 (278)
+-|..+..-|..+|..|..
T Consensus 74 K~LRnKA~~L~~eLe~F~~ 92 (96)
T 1t3j_A 74 KLLRNKAVQLESELENFSK 92 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344556666777777764
No 261
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=44.33 E-value=2.3e+02 Score=27.57 Aligned_cols=25 Identities=8% Similarity=0.224 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Q 023697 48 EDRIAIQHSDIQSLLQDNQRLAATH 72 (278)
Q Consensus 48 e~~L~~q~~eIq~ll~dnqrla~~~ 72 (278)
+.+|+.-+.|+.|.-..|+.+-+..
T Consensus 8 q~~la~yq~elarvqkana~aka~Y 32 (497)
T 3iox_A 8 QAKLTAYQTELARVQKANADAKAAY 32 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666555555544444
No 262
>1ybz_A Chorismate mutase; conserved hypothetical protein, hyperthermophIle, structural genomics, PSI, protein structu initiative; 1.82A {Pyrococcus furiosus} SCOP: a.130.1.1
Probab=44.31 E-value=86 Score=23.28 Aligned_cols=36 Identities=17% Similarity=0.377 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 120 VIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGD 155 (278)
Q Consensus 120 ~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekD 155 (278)
.++.++.+|+.+-.+|-.|-+.|-.+..+|..+.++
T Consensus 18 ~L~~lR~~ID~ID~~Ll~LL~~R~~~~~~Ig~~K~~ 53 (91)
T 1ybz_A 18 TLKLLRKEIDKIDNQIISLLKKRLEIAQAIGKIKKE 53 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888899999999999999999999888888764
No 263
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=44.10 E-value=77 Score=23.87 Aligned_cols=12 Identities=17% Similarity=0.152 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHh
Q 023697 171 AEIETERQEIHK 182 (278)
Q Consensus 171 aEIe~LrqEl~~ 182 (278)
.|++.+++.++.
T Consensus 76 ~e~d~~k~k~~~ 87 (90)
T 2wt7_B 76 RERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 444555544443
No 264
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=43.97 E-value=23 Score=20.60 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023697 67 RLAATHVALKQELSLAEQELRHL 89 (278)
Q Consensus 67 rla~~~~~L~qEL~laqhEL~~l 89 (278)
||-.....|+||+++...|+--|
T Consensus 4 rlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHh
Confidence 45555566777777777666544
No 265
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=43.91 E-value=36 Score=24.67 Aligned_cols=36 Identities=11% Similarity=0.238 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEIN 153 (278)
Q Consensus 118 lr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~Le 153 (278)
+..++.+...|..+..++..+.....+++.+|+.|+
T Consensus 7 ~nsVk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~ 42 (74)
T 1avy_A 7 TNKIKAIETDIASVRQEVNTAKGNISSLQGDVQALQ 42 (74)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhcccccchhhhheeeccccchhhhhhhhhHHHH
Confidence 556666667777777777777777777777777776
No 266
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=43.89 E-value=99 Score=26.08 Aligned_cols=47 Identities=17% Similarity=0.167 Sum_probs=27.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 104 VRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDL 156 (278)
Q Consensus 104 ~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL 156 (278)
||+|+.-+ ++.+..+.+++..++.++.........+..++.+.-.||
T Consensus 126 ireli~~A------ertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDqTl~eL 172 (175)
T 3mud_A 126 IRELICYC------LDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQTLLEL 172 (175)
T ss_dssp HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66665555 556666666777777666665555555555544443333
No 267
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=43.65 E-value=1.1e+02 Score=23.54 Aligned_cols=29 Identities=3% Similarity=0.074 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHh
Q 023697 71 THVALKQELSLAEQELRHLSSVAASVKAE 99 (278)
Q Consensus 71 ~~~~L~qEL~laqhEL~~l~~~i~~~~ae 99 (278)
..++|..+......-+..+..++.++...
T Consensus 14 ~~~~~~~~~~ri~~aig~~d~ri~~Ntqa 42 (114)
T 2xzr_A 14 KIYHIENEIARIKKLIGAIDGRVTRNTQS 42 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHhhhhHHHHhhHHH
Confidence 34444455444444444444455444433
No 268
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=43.42 E-value=99 Score=22.99 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=31.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023697 57 DIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAA 94 (278)
Q Consensus 57 eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~ 94 (278)
-+..-|.+|..|......|+.+++..+.++..|..-+.
T Consensus 40 AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 40 ALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667889999999999999999999998888866554
No 269
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=43.38 E-value=1.1e+02 Score=23.42 Aligned_cols=66 Identities=23% Similarity=0.221 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 78 ELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLA 157 (278)
Q Consensus 78 EL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~ 157 (278)
+|..++..|...+..+..-.... -|-+ |+ -..+-+.|...++...+.....++|..-|+.|.++|-
T Consensus 30 El~~A~dKl~~A~~Am~~~~y~~---Ar~l--------AE---qAe~DArLAeAka~~~Ka~~~~~el~~~I~~LrqEl~ 95 (98)
T 4fm3_A 30 ELKLAQDKYAAAQIAMTAESYKK---ARLL--------AE---QAELDARLAESKVLTQKSKDQLGELDKSLKRLRKQLG 95 (98)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHH---HHHH--------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHcccHHH---HHHH--------HH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57777777777776666444443 1112 11 1234455666666666666666666666666666653
No 270
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=42.97 E-value=58 Score=24.78 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh
Q 023697 166 MAAIKAEIETERQEIHKGRAAI 187 (278)
Q Consensus 166 l~~LkaEIe~LrqEl~~~raa~ 187 (278)
+..|..||+.++.+|...++.|
T Consensus 58 ~DKl~~ele~l~~~l~~~k~~F 79 (93)
T 3sjb_C 58 LDSLDKEINNLKDEIQSENKAF 79 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 271
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=42.64 E-value=5.5 Score=27.24 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=19.8
Q ss_pred CcccccCCccCCCCCCCCCCCCCC
Q 023697 16 SQFTMSGRRVLREPPLSTRALPPQ 39 (278)
Q Consensus 16 ~svTleGD~ydpeG~LsGGs~p~~ 39 (278)
-.||-+||....+|.|.|||-...
T Consensus 35 invtwdgdtvtvegqleggslehh 58 (62)
T 2gjh_A 35 INVTWDGDTVTVEGQLEGGSLEHH 58 (62)
T ss_dssp CEEEECSSCEEEEEECCCCCCCCC
T ss_pred ceeEEcCCEEEEEeEEcCCccccc
Confidence 457889999999999999996543
No 272
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=42.57 E-value=79 Score=21.97 Aligned_cols=6 Identities=17% Similarity=0.357 Sum_probs=2.2
Q ss_pred HHHHHH
Q 023697 172 EIETER 177 (278)
Q Consensus 172 EIe~Lr 177 (278)
+|+.|+
T Consensus 52 ev~~Lr 57 (63)
T 2dgc_A 52 EVARLK 57 (63)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 273
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=42.44 E-value=1.8e+02 Score=25.61 Aligned_cols=92 Identities=14% Similarity=0.179 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHH
Q 023697 100 RDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQE 179 (278)
Q Consensus 100 ~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqE 179 (278)
.-.++|..+..+...|.. +.+.+..-..|..+|.+|....- -+.++..|+++|.+...+. -..++.|..++.
T Consensus 88 ~~d~yR~~LK~IR~~E~s---vqp~R~~R~~l~~~I~kLk~k~P-~s~kl~~LeqELvraEae~---lvaEAqL~n~kR- 159 (234)
T 3plt_A 88 KYDQYRVTLKSIRNIEAS---VQPSRDRKEKITDEIAHLKYKDP-QSTKIPVLEQELVRAEAES---LVAEAQLSNITR- 159 (234)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHhccCC-CCchHHHHHHHHHHHHHHh---hHHHHHHHHhHH-
Confidence 455678886666666755 55555555566666666654322 2467888888888877664 344566766665
Q ss_pred HHhhhhhhhhhhhhchhhHHH
Q 023697 180 IHKGRAAIECEKKNRASNHEQ 200 (278)
Q Consensus 180 l~~~raa~e~ekk~~~e~~eq 200 (278)
++++.+|.+.=.+-.|.-|.
T Consensus 160 -~~lKEa~~~~f~Al~E~aEK 179 (234)
T 3plt_A 160 -EKLKAAYSYMFDSLRELSEK 179 (234)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHH
Confidence 45566666655555544443
No 274
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=42.36 E-value=54 Score=27.90 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=29.2
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 104 VRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDL 149 (278)
Q Consensus 104 ~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~ev 149 (278)
+|+|++-. +..+..++.++.+++.+.++|..+..+..++.
T Consensus 143 i~elid~~------ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 143 IRELICYC------LDTIAENQAKNEHLQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666665 77788888888888888888777777665554
No 275
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=42.23 E-value=46 Score=26.51 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023697 121 IESMHAELDRVRADIEKLCVIK 142 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~r 142 (278)
+..+..|+..+..+|..+...+
T Consensus 38 i~qf~~E~~~l~k~I~~lk~~q 59 (123)
T 2lf0_A 38 YAELEKEKATLEAEIARLREVH 59 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777766554
No 276
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=42.19 E-value=2.2e+02 Score=26.61 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=14.5
Q ss_pred HHHHHH-HHHHHHHHHHhHHhh
Q 023697 208 IISVAQ-QIERLQAELANAEKR 228 (278)
Q Consensus 208 l~~m~~-e~eklrael~n~~~r 228 (278)
|..|+. |++.|..++...+.+
T Consensus 95 ~~~~a~~e~~~l~~~l~~le~~ 116 (365)
T 1gqe_A 95 TFNEAVAELDALEEKLAQLEFR 116 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 555555 788888888777754
No 277
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=41.98 E-value=17 Score=33.53 Aligned_cols=39 Identities=10% Similarity=0.096 Sum_probs=12.9
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 108 YEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDL 149 (278)
Q Consensus 108 ~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~ev 149 (278)
+|.++++|+. +-....+|..++..+..+....++|..+|
T Consensus 3 ~~~~~~lE~~---Il~~~~~i~~L~~~l~~~~~ki~~L~~~i 41 (319)
T 1fzc_C 3 LEEIMKYEAS---ILTHDSSIRYLQEIYNSNNQKIVNLKEKV 41 (319)
T ss_dssp -------CTT---TTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444 33333444444444444433333333333
No 278
>1io1_A Phase 1 flagellin; beta-folium, structural protein; 2.00A {Salmonella typhimurium} SCOP: e.32.1.1
Probab=41.91 E-value=86 Score=29.38 Aligned_cols=74 Identities=14% Similarity=0.161 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hccHHHHHHHHHHHHHHHHhhhhhhhh
Q 023697 116 AELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE---SKDMAAIKAEIETERQEIHKGRAAIEC 189 (278)
Q Consensus 116 aelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d---~~kl~~LkaEIe~LrqEl~~~raa~e~ 189 (278)
++++.++....-+.....-++.......+...-++++..=.-....+ ......+..||+.|+.||.+.-...+|
T Consensus 3 ~~i~~l~q~~~N~~~~~s~lqtae~aL~~i~~~Lqr~relavqaangt~s~~dr~ai~~Ei~~l~~ei~~ia~~t~f 79 (398)
T 1io1_A 3 ANIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQF 79 (398)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCB
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhcee
Confidence 34566677777777888888888888888888787777555554433 356788999999999999986554333
No 279
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=41.53 E-value=1.4e+02 Score=24.18 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023697 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (278)
Q Consensus 118 lr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~ 160 (278)
.|.+.-+..+|..+...+........+|..++..+...|..+.
T Consensus 79 ~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE 121 (147)
T 2b9c_A 79 ARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLE 121 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3444444444444444444444445555555554444444443
No 280
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=41.43 E-value=50 Score=20.52 Aligned_cols=24 Identities=8% Similarity=0.116 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 130 RVRADIEKLCVIKQEMIKDLNEIN 153 (278)
Q Consensus 130 qlr~ei~~l~~~rqeL~~evq~Le 153 (278)
|+...+++|.....+|..+|.+|.
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 455555555555666666665554
No 281
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=41.04 E-value=66 Score=23.80 Aligned_cols=37 Identities=24% Similarity=0.358 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 120 VIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDL 156 (278)
Q Consensus 120 ~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL 156 (278)
.++.++++|..+-.+|-.|-+.|-.+..+|..+.++-
T Consensus 13 ~L~~lR~~ID~iD~~Ll~LL~~R~~~~~~Ig~~K~~~ 49 (90)
T 2vkl_A 13 EIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMAS 49 (90)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 4678899999999999999999999999998888653
No 282
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=40.87 E-value=1.3e+02 Score=23.76 Aligned_cols=47 Identities=2% Similarity=0.114 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-------cHHHHHHHHHHHHHHH
Q 023697 134 DIEKLCVIKQEMIKDLNEINGDLAKARDESK-------DMAAIKAEIETERQEI 180 (278)
Q Consensus 134 ei~~l~~~rqeL~~evq~LekDL~~~~~d~~-------kl~~LkaEIe~LrqEl 180 (278)
.++.+.....+|..-|..++++-.+|+-+.. -+.+++.+|..|+.++
T Consensus 75 ~l~sie~dLeDLe~sI~ivE~np~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 75 GLRSIEWDLEDLEETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444555566667777777754433 3445555555555444
No 283
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=40.74 E-value=52 Score=20.31 Aligned_cols=24 Identities=8% Similarity=0.145 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 130 RVRADIEKLCVIKQEMIKDLNEIN 153 (278)
Q Consensus 130 qlr~ei~~l~~~rqeL~~evq~Le 153 (278)
|+...+++|.....+|..+|.+|.
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 455555666666666666666554
No 284
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=40.30 E-value=68 Score=20.20 Aligned_cols=29 Identities=24% Similarity=0.421 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 118 LRVIESMHAELDRVRADIEKLCVIKQEMI 146 (278)
Q Consensus 118 lr~~e~lk~El~qlr~ei~~l~~~rqeL~ 146 (278)
|..++.+..+|.+-..+|..|...-.+|.
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 56678888888888888888777666553
No 285
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=40.19 E-value=1.5e+02 Score=24.16 Aligned_cols=15 Identities=20% Similarity=0.561 Sum_probs=9.5
Q ss_pred CCchHHHHHHHHHHH
Q 023697 40 HSPSLHHLEDRIAIQ 54 (278)
Q Consensus 40 ~~~l~~~Le~~L~~q 54 (278)
..+.+..++.+|.+.
T Consensus 41 k~~SleEIqkKLeAA 55 (143)
T 3ryc_E 41 RDPSLEEIQKKLEAA 55 (143)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 345566777777665
No 286
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}
Probab=40.09 E-value=1.3e+02 Score=30.05 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEI 152 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~L 152 (278)
+..++...+....+++.|.....++.=+-+.+
T Consensus 21 v~~l~~~~q~~e~~~k~Le~~Qe~F~~~y~~~ 52 (585)
T 1y1u_A 21 FEELRLITQDTENELKKLQQTQEYFIIQYQES 52 (585)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 55555555555556666555555544443333
No 287
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=39.95 E-value=1.1e+02 Score=27.55 Aligned_cols=38 Identities=13% Similarity=0.348 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKA 159 (278)
Q Consensus 122 e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~ 159 (278)
..+...|.++..++.++.....++...|+.|+.++++.
T Consensus 219 ~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~ 256 (268)
T 2yo3_A 219 GEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARI 256 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666777777777777763
No 288
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=39.90 E-value=54 Score=20.38 Aligned_cols=24 Identities=4% Similarity=0.249 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 130 RVRADIEKLCVIKQEMIKDLNEIN 153 (278)
Q Consensus 130 qlr~ei~~l~~~rqeL~~evq~Le 153 (278)
|+...+++|....++|..+|.+|.
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHH
Confidence 455555555555555555555554
No 289
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=39.79 E-value=51 Score=20.55 Aligned_cols=20 Identities=15% Similarity=0.175 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023697 130 RVRADIEKLCVIKQEMIKDL 149 (278)
Q Consensus 130 qlr~ei~~l~~~rqeL~~ev 149 (278)
..+.||.++...-.-|..+|
T Consensus 11 a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 11 THQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHHHHHHHHH
Confidence 33334444333333333333
No 290
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=39.61 E-value=88 Score=29.55 Aligned_cols=29 Identities=14% Similarity=0.278 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 124 MHAELDRVRADIEKLCVIKQEMIKDLNEI 152 (278)
Q Consensus 124 lk~El~qlr~ei~~l~~~rqeL~~evq~L 152 (278)
+.+++..+...+.+....|+.|..+++.+
T Consensus 29 ~~~~~~~~~~~l~~~~~~rr~l~n~~~~l 57 (412)
T 3u06_A 29 QAAELETCKEQLFQSNMERKELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333344444444444444444333
No 291
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=39.52 E-value=77 Score=23.03 Aligned_cols=35 Identities=20% Similarity=0.515 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGD 155 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekD 155 (278)
++.++.+|..+-.+|-.|-+.|-.+..+|..+.++
T Consensus 5 L~~lR~~ID~iD~~l~~Ll~~R~~~~~~i~~~K~~ 39 (90)
T 2d8d_A 5 IQALRKEVDRVNREILRLLSERGRLVQEIGRLQTE 39 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999999999999999988888865
No 292
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=39.41 E-value=54 Score=23.35 Aligned_cols=52 Identities=19% Similarity=0.139 Sum_probs=36.2
Q ss_pred hhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 023697 162 ESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAEL 222 (278)
Q Consensus 162 d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael 222 (278)
+..+...|+.||-.|+.|+....+.=||=|=++. -..+.-|..|+++|..+|
T Consensus 4 ~~~~~~~l~~E~~~lk~E~~stSaQDeFAKWaKL---------~Rk~DKl~~ele~l~~~l 55 (65)
T 3sja_C 4 LSKKYLAKVKERHELKEFNNSISAQDNYAKWTKN---------NRKLDSLDKEINNLKDEI 55 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTTTHHHHHHH---------HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH---------HHHHHHHHHHHHHHHHHh
Confidence 4677888999999999999999998888775542 122333445555555555
No 293
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=39.31 E-value=63 Score=24.88 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023697 128 LDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE 162 (278)
Q Consensus 128 l~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d 162 (278)
+..++.|+..|....+.|-..+..+.+.|..+..|
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted 42 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSED 42 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444444444444444444444444444444433
No 294
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=39.29 E-value=2.6e+02 Score=26.62 Aligned_cols=29 Identities=7% Similarity=0.079 Sum_probs=12.3
Q ss_pred HHHHhhh-hccHHHHHHHHHHHHHHHHhhh
Q 023697 156 LAKARDE-SKDMAAIKAEIETERQEIHKGR 184 (278)
Q Consensus 156 L~~~~~d-~~kl~~LkaEIe~LrqEl~~~r 184 (278)
|..|-.+ ..++..|...+..+......+-
T Consensus 333 m~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~ 362 (483)
T 2j1d_G 333 VSQFITVASFSFSDVEDLLAEAKDLFTKAV 362 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333 3344444444444444444433
No 295
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=38.88 E-value=1.2e+02 Score=22.57 Aligned_cols=45 Identities=27% Similarity=0.350 Sum_probs=24.2
Q ss_pred HHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 103 EVRELYEKSLK-LDAELRVIESMHAELDRVRADIEKLCVIKQEMIK 147 (278)
Q Consensus 103 ~~r~l~~k~~k-leaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~ 147 (278)
+-..|.++.++ |+.-|..++.+..+|.++..++..+...-++|..
T Consensus 29 YWk~lAE~RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 29 YWKEVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443332 4445666666666666666666655555444443
No 296
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=38.84 E-value=68 Score=23.42 Aligned_cols=18 Identities=11% Similarity=0.412 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023697 121 IESMHAELDRVRADIEKL 138 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l 138 (278)
+..|+.+|.+|+.++..|
T Consensus 52 N~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 52 NERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555544443
No 297
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=38.68 E-value=3.2e+02 Score=27.42 Aligned_cols=32 Identities=16% Similarity=0.366 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023697 65 NQRLAATHVALKQELSLAEQELRHLSSVAASV 96 (278)
Q Consensus 65 nqrla~~~~~L~qEL~laqhEL~~l~~~i~~~ 96 (278)
-+.+...|.+++.+|...+..++.+......+
T Consensus 406 v~~ll~kh~~f~~el~~~~~~v~~l~~~~~~L 437 (863)
T 1sjj_A 406 IKALLKKHEAFESDLAAHQDRVEQIAAIAQEL 437 (863)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777666666665444433
No 298
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=38.51 E-value=1.7e+02 Score=24.13 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=27.4
Q ss_pred hhchhhHHHHHHHHHhHHHHHHHH---HHHHHHHHhHH
Q 023697 192 KNRASNHEQREIMEKNIISVAQQI---ERLQAELANAE 226 (278)
Q Consensus 192 k~~~e~~eq~q~meknl~~m~~e~---eklrael~n~~ 226 (278)
..-.+++++.+.|-..+..|+.+. |.+=+||..+-
T Consensus 91 Ell~eL~~~Ck~~qp~i~~Li~e~~ddee~L~elL~~N 128 (158)
T 1naf_A 91 DLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQAN 128 (158)
T ss_dssp THHHHHHHHHHTHHHHHHHHHHHCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhh
Confidence 467789999999999999999865 45556666554
No 299
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=38.38 E-value=68 Score=28.88 Aligned_cols=48 Identities=13% Similarity=0.255 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 100 RDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLA 157 (278)
Q Consensus 100 ~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~ 157 (278)
.|.++..| -..+..+..++.|+...++++....+.|..+|++|.+=+.
T Consensus 214 Td~k~~~l----------~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (268)
T 2yo3_A 214 TDQKMGEM----------NSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIKKLIK 261 (268)
T ss_dssp HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred hhhhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 55566667 6667888888888888888888888888888888876543
No 300
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=38.23 E-value=90 Score=22.04 Aligned_cols=52 Identities=17% Similarity=0.299 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hccHHHHHHHHHHHHHHHHhhhhhh
Q 023697 134 DIEKLCVIKQEMIKDLNEINGDLAKARDE---SKDMAAIKAEIETERQEIHKGRAAI 187 (278)
Q Consensus 134 ei~~l~~~rqeL~~evq~LekDL~~~~~d---~~kl~~LkaEIe~LrqEl~~~raa~ 187 (278)
|+++.-.+|.||.+++--++.||+-++.. ...+|.+- ++.++--+.+.|..|
T Consensus 4 Elr~iLqERNELKa~vf~lqeEL~yY~~e~l~~~~~p~~l--l~a~k~aikkqr~~i 58 (65)
T 1yhn_B 4 EFEQILQERNELKAKVFLLKEELAYFQRELLTDHRVPSLL--LEAMKVAVRKQRKKI 58 (65)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTCCCHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHH--HHHHHHHHHHHHHHH
Confidence 44556667888888888888888887765 34444432 344555555544444
No 301
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=38.19 E-value=23 Score=22.16 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=13.4
Q ss_pred HHHHHhhhhhhhhhhhhchhhHHHHHHH
Q 023697 177 RQEIHKGRAAIECEKKNRASNHEQREIM 204 (278)
Q Consensus 177 rqEl~~~raa~e~ekk~~~e~~eq~q~m 204 (278)
|.+.....++|+.-|+-|+-+-+|.+++
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 3444444444555555555555554443
No 302
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=38.16 E-value=47 Score=30.22 Aligned_cols=21 Identities=10% Similarity=0.290 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023697 135 IEKLCVIKQEMIKDLNEINGD 155 (278)
Q Consensus 135 i~~l~~~rqeL~~evq~LekD 155 (278)
++.|....++|..+++.|++.
T Consensus 187 ie~L~~~~~~L~eEi~~Le~~ 207 (315)
T 2ve7_A 187 LESLEAKNRALNEQIARLEQE 207 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444333
No 303
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=37.66 E-value=25 Score=28.29 Aligned_cols=11 Identities=18% Similarity=0.555 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 023697 147 KDLNEINGDLA 157 (278)
Q Consensus 147 ~evq~LekDL~ 157 (278)
.+|+.|+.+|.
T Consensus 23 ~~~~~l~~~l~ 33 (182)
T 3kqg_A 23 TKIRALQGSLE 33 (182)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444333
No 304
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=37.53 E-value=83 Score=24.89 Aligned_cols=62 Identities=13% Similarity=0.101 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 67 RLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMI 146 (278)
Q Consensus 67 rla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~ 146 (278)
.|......|+.+|...+.+|+.+.+.+.--.... ...+..-|.+=....++..
T Consensus 4 ~L~~~~~~L~~~i~~l~~~L~~lkqa~k~~~~~~---------------------------~~eL~~LI~KWr~asq~aa 56 (122)
T 3viq_A 4 QLLSRRLKLEKEVRNLQEQLITAETARKVEAKNE---------------------------DKDLQTLIQKWKNAAQQAA 56 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---------------------------HHHHHHHHHHHHHHHHHHH
Confidence 3455556666677777777777665554211112 1223444666666666666
Q ss_pred HHHHHHHHH
Q 023697 147 KDLNEINGD 155 (278)
Q Consensus 147 ~evq~LekD 155 (278)
.++....++
T Consensus 57 eeLf~~~~~ 65 (122)
T 3viq_A 57 EVLFKPMAE 65 (122)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655554
No 305
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=37.45 E-value=62 Score=20.10 Aligned_cols=27 Identities=7% Similarity=0.227 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 129 DRVRADIEKLCVIKQEMIKDLNEINGD 155 (278)
Q Consensus 129 ~qlr~ei~~l~~~rqeL~~evq~LekD 155 (278)
-|+...+++|.....+|..+|.+|.+=
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 356666667777777777777776543
No 306
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=37.21 E-value=1.5e+02 Score=23.30 Aligned_cols=20 Identities=20% Similarity=0.282 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023697 121 IESMHAELDRVRADIEKLCV 140 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~ 140 (278)
.+++.-|+..++.+...+..
T Consensus 34 sDPL~~ELeRLr~~~d~~~K 53 (115)
T 3vem_A 34 NDPFLHELEKLRRESENSKK 53 (115)
T ss_dssp CSHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHH
Confidence 35666666666666555443
No 307
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=37.21 E-value=1.2e+02 Score=22.26 Aligned_cols=41 Identities=20% Similarity=0.170 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023697 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE 162 (278)
Q Consensus 122 e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d 162 (278)
-.+-..|.+++.||..|.....++.-++..+.+...++-.|
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~d 63 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQ 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555444444444
No 308
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=37.18 E-value=1e+02 Score=25.35 Aligned_cols=59 Identities=7% Similarity=0.232 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccH-HHHHHHH-----HHHHHHHHhhhhhhhhhhhhchhhHHH
Q 023697 142 KQEMIKDLNEINGDLAKARDESKDM-AAIKAEI-----ETERQEIHKGRAAIECEKKNRASNHEQ 200 (278)
Q Consensus 142 rqeL~~evq~LekDL~~~~~d~~kl-~~LkaEI-----e~LrqEl~~~raa~e~ekk~~~e~~eq 200 (278)
.++|...+..++++|..+.-..+++ .+.+.-- -..++.+..++..|+.||..+.+...+
T Consensus 31 ~~~l~~~i~q~d~elqQLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~ 95 (150)
T 4dci_A 31 EREISNGIANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSELEEQKRN 95 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777766554443 2222100 123455667777777777655554433
No 309
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=36.96 E-value=1.7e+02 Score=23.97 Aligned_cols=117 Identities=15% Similarity=0.216 Sum_probs=62.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHH----HHHHHHHHHHHHHHHHHHHH
Q 023697 62 LQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAE----LRVIESMHAELDRVRADIEK 137 (278)
Q Consensus 62 l~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleae----lr~~e~lk~El~qlr~ei~~ 137 (278)
..+..+.......+..+|..+..-+......+..+..+ ++.+-....-||+- -.+-+.+..+|..+...++.
T Consensus 13 ae~ad~KyeEvaR~E~dLEraEERae~aE~k~~eLEee----L~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKE 88 (155)
T 2efr_A 13 LSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEE----LKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKE 88 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443336666666666666555555533333 22222222222221 23446677777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh----hccHHHHHHHHHHHHHHHHh
Q 023697 138 LCVIKQEMIKDLNEINGDLAKARDE----SKDMAAIKAEIETERQEIHK 182 (278)
Q Consensus 138 l~~~rqeL~~evq~LekDL~~~~~d----~~kl~~LkaEIe~LrqEl~~ 182 (278)
....-....-.|..|++++.++..+ ..+...+..+++..-.+|..
T Consensus 89 AE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~ 137 (155)
T 2efr_A 89 AETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEE 137 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777777777777777766533 23334455555544444444
No 310
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=36.84 E-value=64 Score=20.05 Aligned_cols=24 Identities=13% Similarity=0.176 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 130 RVRADIEKLCVIKQEMIKDLNEIN 153 (278)
Q Consensus 130 qlr~ei~~l~~~rqeL~~evq~Le 153 (278)
|+...+++|.....+|..+|.+|.
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 444445555555555555555544
No 311
>3emo_C HIA (adhesin); transmembrane, outer membrane, trimeric autotransporter, membrane protein/cell adhesion complex; 3.00A {Haemophilus influenzae}
Probab=36.77 E-value=19 Score=30.08 Aligned_cols=41 Identities=27% Similarity=0.340 Sum_probs=30.3
Q ss_pred hchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHhhHHHHH
Q 023697 193 NRASNHEQREIMEKNIISVAQQIERLQAELANAEKRARAAA 233 (278)
Q Consensus 193 ~~~e~~eq~q~meknl~~m~~e~eklrael~n~~~r~~a~~ 233 (278)
+-+=+..|+....+.+-.+...|..|...|.+.++++++.+
T Consensus 52 tDAvN~~Ql~~~~~~v~n~~~~in~L~~~I~~~~k~a~aGi 92 (162)
T 3emo_C 52 TDAINGSQLYAVAKGVTNLAGQVNNLEGKVNKVGKRADAGT 92 (162)
T ss_dssp CCBCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccHHHHhhhhhhhhhhHHHHHHHHhhhhhhHHhHHHHH
Confidence 34456667777666666667788888889988888888776
No 312
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=36.66 E-value=68 Score=22.15 Aligned_cols=40 Identities=20% Similarity=0.125 Sum_probs=30.8
Q ss_pred hhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 023697 183 GRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAEL 222 (278)
Q Consensus 183 ~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael 222 (278)
..-.+.-.|-.|..++.+.+-+|..-.-|-+||+.|++=|
T Consensus 9 se~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LL 48 (58)
T 3a2a_A 9 SERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLL 48 (58)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555677788888888888888888999999998866
No 313
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=36.35 E-value=1.2e+02 Score=21.95 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHh
Q 023697 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAE 99 (278)
Q Consensus 44 ~~~Le~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae 99 (278)
...||.+++-|+.-|.. |.+....-+++|...+..|+.|..++.+....
T Consensus 16 i~~LE~klAfqE~tIee-------Ln~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~~ 64 (78)
T 3efg_A 16 LVELETRLSFQEQALTE-------LSEALADARLTGARNAELIRHLLEDLGKVRST 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 33455555555543333 33444444578888888888887777765543
No 314
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=36.32 E-value=46 Score=22.86 Aligned_cols=11 Identities=0% Similarity=0.247 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 023697 143 QEMIKDLNEIN 153 (278)
Q Consensus 143 qeL~~evq~Le 153 (278)
.+|..+|..|+
T Consensus 25 ~~Le~~v~~L~ 35 (62)
T 1jnm_A 25 ARLEEKVKTLK 35 (62)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 315
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=36.20 E-value=77 Score=25.42 Aligned_cols=20 Identities=20% Similarity=0.312 Sum_probs=7.9
Q ss_pred cHHHHHHHHHHHHHHHHhhh
Q 023697 165 DMAAIKAEIETERQEIHKGR 184 (278)
Q Consensus 165 kl~~LkaEIe~LrqEl~~~r 184 (278)
++..|..+++.+++++..++
T Consensus 33 ~v~~l~~e~k~l~ke~~~l~ 52 (171)
T 2zvf_A 33 TVERFFEEWKDQRKEIERLK 52 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444433333
No 316
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=36.02 E-value=66 Score=27.76 Aligned_cols=46 Identities=9% Similarity=0.285 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccH
Q 023697 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDM 166 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl 166 (278)
...+++++..+-++-..|.....+|.++...|++.+.++..| ..+|
T Consensus 32 ~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn~se~I 78 (206)
T 3oa7_A 32 LQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGNTSERI 78 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCCHHhcc
Confidence 344555556666666666666666777777777777777777 4444
No 317
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=35.55 E-value=1.3e+02 Score=26.00 Aligned_cols=27 Identities=15% Similarity=0.308 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 127 ELDRVRADIEKLCVIKQEMIKDLNEIN 153 (278)
Q Consensus 127 El~qlr~ei~~l~~~rqeL~~evq~Le 153 (278)
-++|++++.....+.-++|+..+..+.
T Consensus 31 ~~~~~~a~~~s~~s~~~dl~~s~~~l~ 57 (206)
T 3oa7_A 31 ALQQLRVNYGSFVSEYNDLTKSHNTLS 57 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666665555555555444433
No 318
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=35.30 E-value=1.2e+02 Score=21.75 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 124 MHAELDRVRADIEKLCVIKQEMIK 147 (278)
Q Consensus 124 lk~El~qlr~ei~~l~~~rqeL~~ 147 (278)
++.++.+++.++......-++|..
T Consensus 17 lE~eL~~~r~e~~~ql~EYq~Lln 40 (74)
T 2xv5_A 17 KEREMAEMRARMQQQLDEYQELLD 40 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444443333333333
No 319
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=35.30 E-value=2.7e+02 Score=28.26 Aligned_cols=26 Identities=46% Similarity=0.442 Sum_probs=11.0
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhhhh
Q 023697 165 DMAAIKAEIETERQEIHKGRAAIECE 190 (278)
Q Consensus 165 kl~~LkaEIe~LrqEl~~~raa~e~e 190 (278)
++..|+.|+..+++++..++...+.|
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (854)
T 1qvr_A 431 RLKAIEAEIAKLTEEIAKLRAEWERE 456 (854)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 320
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=35.28 E-value=1.2e+02 Score=21.75 Aligned_cols=33 Identities=15% Similarity=0.191 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 120 VIESMHAELDRVRADIEKLCVIKQEMIKDLNEI 152 (278)
Q Consensus 120 ~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~L 152 (278)
-+.++...+..-+.||.+|....-.|.+++-.-
T Consensus 4 QNKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKY 36 (74)
T 2q6q_A 4 QNKELNFKLREKQNEIFELKKIAETLRSKLEKY 36 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666666555443
No 321
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=35.05 E-value=62 Score=24.91 Aligned_cols=36 Identities=14% Similarity=0.250 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDL 156 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL 156 (278)
...+++||..|..+=+.|-.....+...++.++.|.
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted~ 43 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDT 43 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445555555555555555556666666666666553
No 322
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=34.70 E-value=37 Score=29.99 Aligned_cols=62 Identities=11% Similarity=0.179 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhh
Q 023697 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIEC 189 (278)
Q Consensus 118 lr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ 189 (278)
+...+.+..++.++..+.++ +..+++.|+.++.+-..+.-.. +.-+..|...+.+.+-.|+.
T Consensus 147 ~~~~e~~~~~i~ql~~En~~-------le~~Ie~Lk~e~~e~~te~~p~---~k~~~qly~~vt~i~w~~~~ 208 (250)
T 2ve7_C 147 LWQYKSSADKMQQLNAAHQE-------ALMKLERLEKEVDEDTTVTIPS---AVYVAQLYHQVSKIEWEYEC 208 (250)
T ss_dssp HHHTTHHHHHHHHHHHHHHH-------HHHSCC-------------CTT---THHHHHHHHHHHCCEECSCC
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhhhhhhHH---HHHHHHHHHHHhhceeeccc
Confidence 44445555555555555444 4444455554444433331111 23334556666666666554
No 323
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=34.63 E-value=3e+02 Score=25.98 Aligned_cols=24 Identities=8% Similarity=0.039 Sum_probs=10.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Q 023697 63 QDNQRLAATHVALKQELSLAEQEL 86 (278)
Q Consensus 63 ~dnqrla~~~~~L~qEL~laqhEL 86 (278)
.+...+......+..+-+.....|
T Consensus 39 ~el~~f~keRa~iE~eYAk~L~kL 62 (486)
T 3haj_A 39 SDLMNCLHERARIEKAYAQQLTEW 62 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445554444443333
No 324
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=34.57 E-value=3.5e+02 Score=26.69 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=7.7
Q ss_pred ccHHHHHHHHHHHHHH
Q 023697 164 KDMAAIKAEIETERQE 179 (278)
Q Consensus 164 ~kl~~LkaEIe~LrqE 179 (278)
.+...|..||+.|+..
T Consensus 567 ~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 567 KESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3344455555555444
No 325
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=33.98 E-value=1.1e+02 Score=20.82 Aligned_cols=36 Identities=8% Similarity=0.207 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLA 157 (278)
Q Consensus 122 e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~ 157 (278)
..++.++.+++.++......-++|..---.|+.|+.
T Consensus 10 ~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIa 45 (59)
T 1gk6_A 10 EELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIA 45 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 344445555555555544444444443334444433
No 326
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=33.96 E-value=76 Score=19.71 Aligned_cols=24 Identities=13% Similarity=0.353 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 130 RVRADIEKLCVIKQEMIKDLNEIN 153 (278)
Q Consensus 130 qlr~ei~~l~~~rqeL~~evq~Le 153 (278)
|+...+++|.....+|..+|.+|.
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHH
Confidence 455555555566666666665554
No 327
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=33.85 E-value=2.4e+02 Score=24.58 Aligned_cols=163 Identities=10% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 023697 49 DRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAEL 128 (278)
Q Consensus 49 ~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El 128 (278)
+.|...-.....++.+...+..+...|..+-+.....|..--........+. ..+..=.
T Consensus 32 ~~l~~r~~~g~~~~~el~~f~keRa~iE~eYak~L~kLakk~~~~~~~~~e~---------------------gtl~~aw 90 (312)
T 3abh_A 32 KRTVKRIDDGHRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQY---------------------GTVEKAW 90 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCC---------------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC---------------------ChHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhh---------hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhH
Q 023697 129 DRVRADIEKLCVIKQEMIKDLN-EINGDLAKARDE---------SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNH 198 (278)
Q Consensus 129 ~qlr~ei~~l~~~rqeL~~evq-~LekDL~~~~~d---------~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~ 198 (278)
..+..++..+......+...+. .+...|..|..+ -..-+.+..+++.+.+.+......++--|+.+....
T Consensus 91 ~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~k~~~~~~ke~k~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c 170 (312)
T 3abh_A 91 MAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAAC 170 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCTTSSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHHHHH-------HHHHHHHHHHHhHHhhHHHH
Q 023697 199 EQREIMEKNIISVA-------QQIERLQAELANAEKRARAA 232 (278)
Q Consensus 199 eq~q~meknl~~m~-------~e~eklrael~n~~~r~~a~ 232 (278)
......+..+.... ++++|++.-+..+..-+..+
T Consensus 171 ~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a 211 (312)
T 3abh_A 171 KEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKT 211 (312)
T ss_dssp HHHHHHTTHHHHHHTCTTCCSHHHHGGGTTTTSHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHHHHHHHH
No 328
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=33.83 E-value=99 Score=23.26 Aligned_cols=35 Identities=6% Similarity=0.152 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGD 155 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekD 155 (278)
++.++.+|..+-.+|-.|-+.|-.+..+|..+.++
T Consensus 7 L~~lR~~ID~iD~~L~~LL~~R~~~~~~v~~~K~~ 41 (109)
T 1ecm_A 7 LLALREKISALDEKLLALLAERRELAVEVGKAKLL 41 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788899999999999999999999988888865
No 329
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=33.70 E-value=2.3e+02 Score=25.84 Aligned_cols=19 Identities=5% Similarity=0.104 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023697 137 KLCVIKQEMIKDLNEINGD 155 (278)
Q Consensus 137 ~l~~~rqeL~~evq~LekD 155 (278)
.+...+++|..+++.+++-
T Consensus 21 ~lr~~~eql~~~i~~L~~~ 39 (302)
T 3ibp_A 21 ALRQEQEQLQSRIQSLMQR 39 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 330
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=33.56 E-value=1.3e+02 Score=21.63 Aligned_cols=60 Identities=8% Similarity=0.121 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023697 167 AAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAE 226 (278)
Q Consensus 167 ~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael~n~~ 226 (278)
++|+++|.+|+..-...-..+=.---.=.-.++++-..=+-....-+++..+|++|+..+
T Consensus 6 ~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~~ 65 (71)
T 2js5_A 6 EELKAKLKKLNAQATALKMDLHDLAEDLPTGWNRIMEVAEKTYEAYRQLDEFRKSTASLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443333333333222222233333333333444455567777787776654
No 331
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=33.12 E-value=1.6e+02 Score=22.53 Aligned_cols=36 Identities=3% Similarity=0.152 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 120 VIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGD 155 (278)
Q Consensus 120 ~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekD 155 (278)
.++.++.+|..+-.+|-.|-+.|-.+..+|..+.++
T Consensus 13 ~L~~lR~~ID~ID~~il~LL~~R~~~~~~I~~~K~~ 48 (114)
T 3rmi_A 13 ELAYLRQSIDNFDITLIHILAERFRCTQAIGRLKAR 48 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888888888888888888888888888887754
No 332
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=32.61 E-value=62 Score=23.30 Aligned_cols=23 Identities=4% Similarity=-0.031 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023697 131 VRADIEKLCVIKQEMIKDLNEIN 153 (278)
Q Consensus 131 lr~ei~~l~~~rqeL~~evq~Le 153 (278)
++.+++.|.....+|..++..|.
T Consensus 52 L~~~~~~l~~e~~~L~~~~~~L~ 74 (83)
T 1nkp_B 52 MRRKNHTHQQDIDDLKRQNALLE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 333
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=32.52 E-value=1.2e+02 Score=20.60 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 118 LRVIESMHAELDRVRADIEKLCVI 141 (278)
Q Consensus 118 lr~~e~lk~El~qlr~ei~~l~~~ 141 (278)
++-+|.+|.|=-.+|.|++.-...
T Consensus 9 ~~QVe~Lk~ENshLrrEL~dNS~~ 32 (54)
T 1deb_A 9 LKQVEALKMENSNLRQELEDNSNH 32 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHhhHHH
Confidence 677777777777777666653333
No 334
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=32.52 E-value=2.1e+02 Score=23.44 Aligned_cols=28 Identities=11% Similarity=0.215 Sum_probs=18.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 64 DNQRLAATHVALKQELSLAEQELRHLSS 91 (278)
Q Consensus 64 dnqrla~~~~~L~qEL~laqhEL~~l~~ 91 (278)
.-+.+...|..++.+|......+..+..
T Consensus 47 ~ve~ll~~H~~l~~ei~~~~~~~~~~~~ 74 (218)
T 3fb2_A 47 GAEALLERHQEHRTEIDARAGTFQAFEQ 74 (218)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3556667788888888766655555543
No 335
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=32.50 E-value=1.2e+02 Score=20.78 Aligned_cols=24 Identities=13% Similarity=0.245 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 130 RVRADIEKLCVIKQEMIKDLNEIN 153 (278)
Q Consensus 130 qlr~ei~~l~~~rqeL~~evq~Le 153 (278)
.+..++..|.....+|..+|..|.
T Consensus 27 ~Le~~v~~L~~~n~~L~~ei~~L~ 50 (63)
T 2wt7_A 27 TLQAETDQLEDEKSALQTEIANLL 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 336
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=32.45 E-value=84 Score=23.87 Aligned_cols=24 Identities=13% Similarity=0.026 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 66 QRLAATHVALKQELSLAEQELRHL 89 (278)
Q Consensus 66 qrla~~~~~L~qEL~laqhEL~~l 89 (278)
.+.+.....|+.|+...+.|+..+
T Consensus 19 s~~a~~~~~lk~E~~~lk~E~~st 42 (93)
T 3sjb_C 19 NELSKKYLAKVKERHELKEFNNSI 42 (93)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cHhHHHHHHHHHHHHHHHHHHhcc
Confidence 455555555555555555555444
No 337
>2p01_A Alpha-2-macroglobulin receptor-associated protein; RAP, cell adhesion; NMR {Homo sapiens} PDB: 2p03_A
Probab=32.34 E-value=2.9e+02 Score=25.43 Aligned_cols=71 Identities=10% Similarity=0.259 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhh----HHHHHHHHHhHHHHHHHHHHHHHHHH
Q 023697 148 DLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASN----HEQREIMEKNIISVAQQIERLQAELA 223 (278)
Q Consensus 148 evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~----~eq~q~meknl~~m~~e~eklrael~ 223 (278)
++.+|..||.-|.+-..|+.-+.+|+.--.+.+.+. |+-+..+. -+..+.||.++=-+++=|+||+.+|.
T Consensus 239 ELeSlK~EL~HfE~rL~KlrH~~~El~l~~~k~k~~------e~~g~~~~~~~~~~k~~~leek~Kk~~rKV~Kl~~~Le 312 (323)
T 2p01_A 239 ELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHA------ESVGDGERVSRSREKHALLEGRTKELGYTVKKHLQDLS 312 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HTTSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666655555655555554221222111 11112222 24468999999999999999999994
Q ss_pred h
Q 023697 224 N 224 (278)
Q Consensus 224 n 224 (278)
.
T Consensus 313 ~ 313 (323)
T 2p01_A 313 G 313 (323)
T ss_dssp H
T ss_pred H
Confidence 4
No 338
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=31.96 E-value=88 Score=22.31 Aligned_cols=13 Identities=23% Similarity=0.547 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHh
Q 023697 148 DLNEINGDLAKAR 160 (278)
Q Consensus 148 evq~LekDL~~~~ 160 (278)
+|+.|...|.+|+
T Consensus 40 eI~eLr~~LdK~q 52 (67)
T 1zxa_A 40 EIQELKRKLHKCQ 52 (67)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 339
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=31.84 E-value=1.7e+02 Score=22.17 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=13.6
Q ss_pred HHhHHHHHHHHHHHHHHHHhHH
Q 023697 205 EKNIISVAQQIERLQAELANAE 226 (278)
Q Consensus 205 eknl~~m~~e~eklrael~n~~ 226 (278)
+.-|..++..|++|++++-+-.
T Consensus 61 ~~~L~e~~~kid~L~~el~K~q 82 (98)
T 2ke4_A 61 EPQIAETLSNIERLKLEVQKYE 82 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666667777777664443
No 340
>3i9y_A Sensor protein; stacked two four-helix bundles, ATP-binding, kinase, nucleotide-binding, phosphoprotein, transferase, transmembrane; 2.16A {Vibrio parahaemolyticus} PDB: 3o1i_A* 3o1h_A* 3o1j_A
Probab=31.83 E-value=2.8e+02 Score=24.78 Aligned_cols=87 Identities=13% Similarity=0.216 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhh---hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHH
Q 023697 142 KQEMIKDLNEINGDLAKARDE---SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERL 218 (278)
Q Consensus 142 rqeL~~evq~LekDL~~~~~d---~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~ekl 218 (278)
...|..++..|..-++.+... ..-+..|+.++..+-.-|.++-..++ .+..+-.+.+..-+.+..-|.+++.|
T Consensus 39 gr~L~~~~~~l~~~i~~L~~~~~~~~~l~~Le~~v~~ii~~L~~lg~~V~----~RL~L~~~~~~~~~~l~~aa~~l~eL 114 (276)
T 3i9y_A 39 GRVLFEQLESLLTHIKELGGESFDSKLLDALESNVQNVINNLAELGVTVE----RKLWLAKEIDTRVEEMRLLSEELEQL 114 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666666666666666544 34456666666655555555544443 34555566667777777788887665
Q ss_pred -HHHHHhHHhhHHHH
Q 023697 219 -QAELANAEKRARAA 232 (278)
Q Consensus 219 -rael~n~~~r~~a~ 232 (278)
|++++||+.++-|.
T Consensus 115 ~~tqvaNa~t~~~A~ 129 (276)
T 3i9y_A 115 TRTQVQNTSTIAVAN 129 (276)
T ss_dssp TCC------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 88999988776553
No 341
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=31.76 E-value=2.7e+02 Score=24.50 Aligned_cols=28 Identities=4% Similarity=-0.010 Sum_probs=19.8
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 023697 197 NHEQREIMEKNIISVAQQIERLQAELAN 224 (278)
Q Consensus 197 ~~eq~q~meknl~~m~~e~eklrael~n 224 (278)
++-+.+++|+.|......|..|+..-..
T Consensus 155 LLkkh~~le~~l~~~~~~i~~L~~~a~~ 182 (283)
T 3pe0_A 155 LLQDAQDEKEQLNEYKGHLSGLAKRAKA 182 (283)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445667777888888888888876543
No 342
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=31.51 E-value=1.3e+02 Score=23.99 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=47.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 58 IQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEK 137 (278)
Q Consensus 58 Iq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~ 137 (278)
|..+..+.-+.|+-+ -+=++.+..+|+- .+...+=..|++| +++.+..+..|.+...+...
T Consensus 10 id~L~leFAKrAa~f---NnW~e~A~EdL~D------~~~v~sleEI~~L----------~~~He~F~~~L~~a~~e~~~ 70 (129)
T 1wlx_A 10 IDQLHLEYAKRAAPF---NNWMESAMEDLQD------MFIVHTIEEIEGL----------ISAHDQFKSTLPDADREREA 70 (129)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHS------CCCCCSHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHH---HHHHHhHHHHhcc------chhhccHHHHHHH----------HHHHHHHHHhHHHHHHHHHH
Confidence 344444444444433 3445666665542 2233344456677 88899999999999999888
Q ss_pred HHHHHHHHHHHHHH
Q 023697 138 LCVIKQEMIKDLNE 151 (278)
Q Consensus 138 l~~~rqeL~~evq~ 151 (278)
+....++|...+++
T Consensus 71 i~~i~~el~~~~~~ 84 (129)
T 1wlx_A 71 ILAIHKEAQRIAES 84 (129)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777666544
No 343
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=31.45 E-value=1.7e+02 Score=28.67 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEING 154 (278)
Q Consensus 118 lr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~Lek 154 (278)
+..+-++..+-.++..+++.|.+.+..++.+|..+.+
T Consensus 33 vd~~~~ld~~~r~~~~~~e~l~~~~N~~sk~ig~~~~ 69 (522)
T 3vbb_A 33 VDQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMK 69 (522)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455556666777777788888888887776644
No 344
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=31.35 E-value=1.8e+02 Score=22.50 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHhH
Q 023697 70 ATHVALKQELSLAEQELRHLSSVAASVKAER 100 (278)
Q Consensus 70 ~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~ 100 (278)
.......++|..+.+.|.-.....+..+-+-
T Consensus 42 ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDev 72 (107)
T 2k48_A 42 ENITAHEQQLVTARQKLKDAEKAVEVDPDDV 72 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 3344445778888888887777776555543
No 345
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=30.87 E-value=1.6e+02 Score=21.73 Aligned_cols=55 Identities=18% Similarity=0.216 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhh
Q 023697 131 VRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIE 188 (278)
Q Consensus 131 lr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e 188 (278)
...+.+.|.....+|.-.|..|+.+=... ..||++-++||-.|++.+....+.|+
T Consensus 17 ~~~~~E~L~qEi~~Lr~kv~elEnErlQy---EkKLKsTK~El~~Lq~qLe~kd~ei~ 71 (81)
T 3qh9_A 17 KQRKAEELLQELRHLKIKVEELENERNQY---EWKLKATKAEVAQLQEQVALKDAEIE 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhHHHHHHHHHHHHhhHHHHH
Confidence 33445555555555555555555442221 46677777788777777766655554
No 346
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=30.79 E-value=1.6e+02 Score=21.58 Aligned_cols=38 Identities=18% Similarity=0.344 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGD 155 (278)
Q Consensus 118 lr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekD 155 (278)
-+.++.+-.|=.+|..--..|...+.+|-++|..|+.+
T Consensus 8 gkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E 45 (77)
T 2w83_C 8 GREVENLILENTQLLETKNALNIVKNDLIAKVDELTCE 45 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34445555555555555555555566666666555544
No 347
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=30.70 E-value=1.8e+02 Score=22.34 Aligned_cols=36 Identities=8% Similarity=0.130 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAK 158 (278)
Q Consensus 123 ~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~ 158 (278)
.|+.-..+++.-|..|...+=+|...|..-..||++
T Consensus 46 ~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~e 81 (106)
T 1j1d_B 46 QLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINV 81 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHH
Confidence 334444444444444444444444444444444333
No 348
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=30.58 E-value=3.7e+02 Score=26.05 Aligned_cols=59 Identities=17% Similarity=0.304 Sum_probs=16.4
Q ss_pred CCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 26 LREPPLSTRALPPQHSPSLHHLEDRIAIQHSDIQSL--LQDNQRLAATHVALKQELSLAEQELRHL 89 (278)
Q Consensus 26 dpeG~LsGGs~p~~~~~l~~~Le~~L~~q~~eIq~l--l~dnqrla~~~~~L~qEL~laqhEL~~l 89 (278)
.|+|+.-+|+.. .. ...||++|-.-+..|+.+ +.. .+...+|..|++.+..--+||-..
T Consensus 7 ~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~e~~~~ 67 (526)
T 2de0_X 7 IPEGPIDQGPAI--GR--VRVLEEQLVKAKEQIENYKKQTR-NGLGKDHEILRRRIENGAKELWFF 67 (526)
T ss_dssp --------------------------------------------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccccCccc--hh--HhhHHHHHhhhhhhhhHHhcccC-CCCChHHHHHHHHHHHhHHHHHHH
Confidence 689998888721 11 346788776666654422 222 344568888888888877777443
No 349
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=30.42 E-value=1.1e+02 Score=22.58 Aligned_cols=22 Identities=14% Similarity=0.309 Sum_probs=14.0
Q ss_pred HhHHHHHHHHHHHHHHHHhHHh
Q 023697 206 KNIISVAQQIERLQAELANAEK 227 (278)
Q Consensus 206 knl~~m~~e~eklrael~n~~~ 227 (278)
+-....-+++..+|++|..+++
T Consensus 57 ~~tyda~~~l~~ak~~L~~~e~ 78 (81)
T 3csx_A 57 EKTYEIFRELDQLKKKLNIWEE 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455677778888876653
No 350
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=30.41 E-value=2.1e+02 Score=22.99 Aligned_cols=32 Identities=13% Similarity=0.311 Sum_probs=20.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023697 63 QDNQRLAATHVALKQELSLAEQELRHLSSVAA 94 (278)
Q Consensus 63 ~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~ 94 (278)
..-+.+...|..++.+|...+..+..+.....
T Consensus 33 ~~v~~ll~~h~~~~~ei~~~~~~~~~~~~~g~ 64 (214)
T 1s35_A 33 PEAEQLLQQHAGIKDEIDGHQDSYQRVKESGE 64 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33456666777777777777666666554443
No 351
>3htk_B Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=30.09 E-value=1.4e+02 Score=20.90 Aligned_cols=36 Identities=11% Similarity=0.327 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023697 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE 162 (278)
Q Consensus 127 El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d 162 (278)
.|.++...|.++....-.+..++.....+|.+.+.+
T Consensus 5 ki~~~e~kI~~~~~~~~~~l~~~~~~~~~l~~~~~e 40 (73)
T 3htk_B 5 KIKDIDDQIQQLLLKQRHLLSKMASSMKSLKNCQKE 40 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555544
No 352
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=30.02 E-value=1.9e+02 Score=22.24 Aligned_cols=35 Identities=9% Similarity=-0.005 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023697 128 LDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE 162 (278)
Q Consensus 128 l~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d 162 (278)
+..++.|+..|+...+.+-.+...=.+++.+|-..
T Consensus 44 lhdl~seV~~LK~dv~~~L~k~~~e~qe~~~FIKa 78 (101)
T 4aj5_1 44 LYDLHSEVQTLKDDINILLDKARLENQEGIDFIKA 78 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34456666666666666666665556666665543
No 353
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=30.00 E-value=4.1e+02 Score=26.32 Aligned_cols=49 Identities=12% Similarity=0.040 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHH
Q 023697 166 MAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQI 215 (278)
Q Consensus 166 l~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~ 215 (278)
..++++.++.|++-.......+ +|...+.+.++.++.+=.+.-.++.++
T Consensus 603 ~~~~~~~~~~l~~~~~~i~~r~-~e~~~rp~~~~~~~~~~~~~~~~~~~~ 651 (675)
T 3d2f_A 603 KAKYIAKYEELASLGNIIRGRY-LAKEEEKKQAIRSKQEASQMAAMAEKL 651 (675)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333322 566666666666666555555555444
No 354
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=29.77 E-value=2.2e+02 Score=24.61 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=25.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023697 58 IQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAA 94 (278)
Q Consensus 58 Iq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~ 94 (278)
+..-|.+|..|......|+.+++..+.++..|..-+.
T Consensus 110 L~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae 146 (209)
T 2wvr_A 110 LYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAE 146 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777777777777777655544
No 355
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=29.67 E-value=1.7e+02 Score=21.48 Aligned_cols=61 Identities=18% Similarity=0.295 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhh
Q 023697 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRA 185 (278)
Q Consensus 122 e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~ra 185 (278)
-.++..+.++++|++.|..-.++|..=-+.|..=|.++..+ -..|...|+.|+.....+..
T Consensus 14 rrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E---~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQE---VAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 34667777788888887777777765555544444443322 23344555555554444433
No 356
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=29.34 E-value=1.2e+02 Score=21.15 Aligned_cols=48 Identities=10% Similarity=0.189 Sum_probs=35.3
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHH
Q 023697 164 KDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQ 214 (278)
Q Consensus 164 ~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e 214 (278)
....+|..+|..++.|+-.+|..-- . +..++..+.+..-+++..+-..
T Consensus 9 ~s~~EL~~~l~elk~ELf~LR~q~a--t-gql~n~~~ir~vRr~IARi~Tv 56 (66)
T 1r73_A 9 YTDEELKNLLEEKKRQLMELRFQLA--M-GQLKNTSLIKLTKRDIARIKTI 56 (66)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHH--H-TCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH--c-cCccCcHHHHHHHHHHHHHHHH
Confidence 3457788888888888888884333 2 6678888888888888776553
No 357
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=29.30 E-value=96 Score=20.63 Aligned_cols=15 Identities=27% Similarity=0.523 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 023697 145 MIKDLNEINGDLAKA 159 (278)
Q Consensus 145 L~~evq~LekDL~~~ 159 (278)
|..+|..|++|+..+
T Consensus 36 lekdianlekdianl 50 (56)
T 3he4_A 36 LEKDIANLEKDIANL 50 (56)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 358
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=29.25 E-value=44 Score=22.13 Aligned_cols=7 Identities=43% Similarity=0.354 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 023697 174 ETERQEI 180 (278)
Q Consensus 174 e~LrqEl 180 (278)
+.+++|+
T Consensus 33 eAi~~El 39 (45)
T 1use_A 33 EAFVQEL 39 (45)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3334433
No 359
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=29.02 E-value=1.5e+02 Score=25.26 Aligned_cols=14 Identities=7% Similarity=0.214 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 023697 76 KQELSLAEQELRHL 89 (278)
Q Consensus 76 ~qEL~laqhEL~~l 89 (278)
+.+|..++.++.+.
T Consensus 73 ~a~l~~a~~~~~r~ 86 (277)
T 2f1m_A 73 QAAANIAQLTVNRY 86 (277)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555444
No 360
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=29.01 E-value=78 Score=20.63 Aligned_cols=28 Identities=25% Similarity=0.472 Sum_probs=15.0
Q ss_pred HHHHHHhhh-hccHHHHHHHHHHHHHHHH
Q 023697 154 GDLAKARDE-SKDMAAIKAEIETERQEIH 181 (278)
Q Consensus 154 kDL~~~~~d-~~kl~~LkaEIe~LrqEl~ 181 (278)
.||+.-+.+ ..+|..|...++.|...++
T Consensus 12 sel~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 12 SDLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 4556666666666665554
No 361
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=28.92 E-value=2.3e+02 Score=22.92 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023697 121 IESMHAELDRVRADIEKLCVI 141 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~ 141 (278)
++.++..|..++..+.+|...
T Consensus 11 ~~~i~~~i~~i~~~v~~L~~l 31 (196)
T 1fio_A 11 ISQINRDLDKYDHTINQVDSL 31 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444433333
No 362
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=28.58 E-value=1.4e+02 Score=20.43 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=26.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023697 64 DNQRLAATHVALKQELSLAEQELRHLSSVAA 94 (278)
Q Consensus 64 dnqrla~~~~~L~qEL~laqhEL~~l~~~i~ 94 (278)
+..+|.++-.+|+.++.-.++|...+...+.
T Consensus 4 eEKSlVDtVYaLkDqV~eL~qe~k~m~k~lE 34 (56)
T 2w6b_A 4 GSKSLVDTVYALKDEVQELRQDNKKMKKSLE 34 (56)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999999988776
No 363
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=28.41 E-value=2.2e+02 Score=22.60 Aligned_cols=55 Identities=15% Similarity=0.270 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHH-HHHHHHHHh
Q 023697 128 LDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEI-ETERQEIHK 182 (278)
Q Consensus 128 l~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEI-e~LrqEl~~ 182 (278)
|.++..++.++.....+|.++|.+|-+++..-+....-+..+-+.| ..+...+.+
T Consensus 4 l~~i~~ei~e~~~~i~~l~~~Ik~il~~~~st~~~~~~lEsiAAKIIkDisdkId~ 59 (129)
T 3f6n_A 4 LNQIQKEVSEILSDQKSMKADIKAILELLGSQNPIKESLETVAAKIVNDLTKLIND 59 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHHHHHHHHHHhc
Confidence 3445555555555566666666666666655221123344444443 444444443
No 364
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=28.31 E-value=42 Score=25.67 Aligned_cols=46 Identities=13% Similarity=0.202 Sum_probs=21.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 107 LYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEI 152 (278)
Q Consensus 107 l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~L 152 (278)
|-+.+.++++++..+.-+++.+.--+.|...-.+.|..+..+...|
T Consensus 43 LKe~i~q~~~~~E~i~vL~aQ~~iY~~DF~aERaaREk~~~EKe~L 88 (96)
T 3fx0_A 43 LKEEAEQHKIVMETVPVLKAQADIYKADFQAERQAREKLAEKKELL 88 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTSCC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3333444444455555555555555555554444444444443333
No 365
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=28.08 E-value=1.8e+02 Score=21.36 Aligned_cols=39 Identities=26% Similarity=0.329 Sum_probs=20.1
Q ss_pred HHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 103 EVRELYEKSLK-LDAELRVIESMHAELDRVRADIEKLCVI 141 (278)
Q Consensus 103 ~~r~l~~k~~k-leaelr~~e~lk~El~qlr~ei~~l~~~ 141 (278)
+-..|.++.++ |+.-|..++.+..+|.++..+|..|...
T Consensus 17 YWk~lAE~RR~AL~eaL~EN~~Lh~~ie~~~eEi~~LkeE 56 (79)
T 2zxx_A 17 YWKEVAEQRRKALYEALKENEKLHKEIEQKDSEIARLRKE 56 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444333 3444566666666666666665554443
No 366
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=27.94 E-value=2.8e+02 Score=23.59 Aligned_cols=15 Identities=13% Similarity=0.149 Sum_probs=3.4
Q ss_pred HHHHHHHHHHHHHHH
Q 023697 127 ELDRVRADIEKLCVI 141 (278)
Q Consensus 127 El~qlr~ei~~l~~~ 141 (278)
.+.+.+..|++|..+
T Consensus 14 ql~~ad~LV~~L~~E 28 (190)
T 4emc_A 14 QIDSADLLVANLVNE 28 (190)
T ss_dssp ------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 367
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=27.89 E-value=1.6e+02 Score=23.33 Aligned_cols=92 Identities=12% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHH---------------------------------
Q 023697 134 DIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEI--------------------------------- 180 (278)
Q Consensus 134 ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl--------------------------------- 180 (278)
+++++....+.|..+++.+...+..++.-..++++++.-++.+..--
T Consensus 10 ~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~v~lG~g 89 (151)
T 2zdi_C 10 ELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVSVGSG 89 (151)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEEEEeCCC
Q ss_pred ----HhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhH
Q 023697 181 ----HKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANA 225 (278)
Q Consensus 181 ----~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael~n~ 225 (278)
.....++++-++--..+-.++..+++++......+..+...|...
T Consensus 90 ~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l 138 (151)
T 2zdi_C 90 YAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEV 138 (151)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred eEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 368
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=27.80 E-value=98 Score=24.01 Aligned_cols=18 Identities=11% Similarity=0.259 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 023697 143 QEMIKDLNEINGDLAKAR 160 (278)
Q Consensus 143 qeL~~evq~LekDL~~~~ 160 (278)
+.|...|+.++.+|.+++
T Consensus 99 ~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 99 KALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 344445555555555553
No 369
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=27.76 E-value=75 Score=24.19 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHhhh--hccHHHHHHHHHHHHHHHHhhhhhhh
Q 023697 145 MIKDLNEINGDLAKARDE--SKDMAAIKAEIETERQEIHKGRAAIE 188 (278)
Q Consensus 145 L~~evq~LekDL~~~~~d--~~kl~~LkaEIe~LrqEl~~~raa~e 188 (278)
|..++..|..|+.-..+- =.|=.-|...++.|..||..+...+.
T Consensus 35 lk~E~~~lk~E~~stSaQDEFAKWAKL~Rk~DKl~~ele~l~~~L~ 80 (94)
T 3vlc_E 35 KVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQ 80 (94)
T ss_dssp HHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHTTTHHHHTT
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444433322 23444444444444444444443333
No 370
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=27.30 E-value=1.4e+02 Score=25.39 Aligned_cols=10 Identities=30% Similarity=0.398 Sum_probs=4.1
Q ss_pred HHHHHHHHHh
Q 023697 215 IERLQAELAN 224 (278)
Q Consensus 215 ~eklrael~n 224 (278)
++.++..+.+
T Consensus 121 l~~a~~~l~~ 130 (277)
T 2f1m_A 121 VETARINLAY 130 (277)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhc
Confidence 3344444433
No 371
>1sf9_A YFHH hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative, midwest center for structural genomics; 1.71A {Bacillus subtilis} SCOP: b.34.15.1
Probab=27.15 E-value=48 Score=26.60 Aligned_cols=34 Identities=24% Similarity=0.213 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHHhHHHHHH-----HHHHHHHHHHhHHhh
Q 023697 195 ASNHEQREIMEKNIISVAQ-----QIERLQAELANAEKR 228 (278)
Q Consensus 195 ~e~~eq~q~meknl~~m~~-----e~eklrael~n~~~r 228 (278)
-.++=|..+|||.+-.|.. ||..|+.+...||+.
T Consensus 16 ~~~~~~~~~mekrySeMS~~EL~~EI~~L~EKaRKAEq~ 54 (128)
T 1sf9_A 16 ENLYFQSNAMEKRYSQMTPHELNTEIALLSEKARKAEQH 54 (128)
T ss_dssp GHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ceeeeecchhhHHHHHcCHHHHHHHHHHHHHHHHHHHHc
Confidence 3467799999999999987 677777777666644
No 372
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=26.60 E-value=1e+02 Score=22.60 Aligned_cols=42 Identities=21% Similarity=0.371 Sum_probs=27.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHH
Q 023697 57 DIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVREL 107 (278)
Q Consensus 57 eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l 107 (278)
-++..|.-.+.+-..++.|.|-|+..-.+|+ +++++.++|.+
T Consensus 23 ~LQ~eLdtsE~VQrDFVkLSQsLQvqLE~IR---------qadt~~qvr~I 64 (79)
T 1tu3_F 23 RLQTELDVSEQVQRDFVKLSQTLQVQLERIR---------QADSLERIRAI 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------TCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhhhHHHHHHH
Confidence 4555566667777777777776665544443 35677788888
No 373
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=26.50 E-value=91 Score=21.83 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHH
Q 023697 168 AIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNII 209 (278)
Q Consensus 168 ~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~ 209 (278)
.+..-|+.|++++..+-...+||+-+. .-++.+++++.++
T Consensus 21 ~~~~~i~~Le~~M~~AA~~leFE~AA~--lRD~I~~L~~~l~ 60 (63)
T 1e52_A 21 ALQQKIHELEGLMMQHAQNLEFEEAAQ--IRDQLHQLRELFI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHH--HHHHHHHHHHHHh
Confidence 456667777777777777777877653 4566666665544
No 374
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=26.48 E-value=7.6 Score=29.06 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=14.1
Q ss_pred CcccccCCccCCCCCCCCCCCCC
Q 023697 16 SQFTMSGRRVLREPPLSTRALPP 38 (278)
Q Consensus 16 ~svTleGD~ydpeG~LsGGs~p~ 38 (278)
-.||.+||..-.+|.|.|||-..
T Consensus 79 invtfdgdtvtvegqleggsleh 101 (106)
T 1qys_A 79 INVTFDGDTVTVEGQLEGGSLEH 101 (106)
T ss_dssp EEEEEETTEEEEEEEC-------
T ss_pred eeEEEcCCeEEEEeEEcCCcccc
Confidence 35788999999999999999653
No 375
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=26.44 E-value=1.5e+02 Score=20.07 Aligned_cols=39 Identities=15% Similarity=0.114 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 023697 45 HHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAE 83 (278)
Q Consensus 45 ~~Le~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laq 83 (278)
..++..|.....++.+.+.+.+-|.+--.+|..|++.-.
T Consensus 10 ~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYR 48 (59)
T 1gk6_A 10 EELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYR 48 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 356777777777777777777777777777776665443
No 376
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=26.40 E-value=1.2e+02 Score=20.25 Aligned_cols=38 Identities=5% Similarity=0.327 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh--hccHHHHHHHHHHHHH
Q 023697 141 IKQEMIKDLNEINGDLAKARDE--SKDMAAIKAEIETERQ 178 (278)
Q Consensus 141 ~rqeL~~evq~LekDL~~~~~d--~~kl~~LkaEIe~Lrq 178 (278)
.|.++...+..|+++-..++-. .-+|..|+.+++.+++
T Consensus 7 rr~e~ld~l~~LEkqF~~LkEqlY~ERl~ql~~~Leel~~ 46 (49)
T 2xus_A 7 RRSECVSEMLDLEKQFSELKEKLFRERLSQLRLRLEEVGA 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4555555666666665555544 4556666666655543
No 377
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=26.19 E-value=2.8e+02 Score=24.13 Aligned_cols=43 Identities=14% Similarity=0.212 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023697 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (278)
Q Consensus 118 lr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~ 160 (278)
..+...+|+++..++..+++...+++.+++++....+.+++++
T Consensus 170 a~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~ 212 (228)
T 3q0x_A 170 AFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLR 212 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788888888888888888877777777776666655543
No 378
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=25.87 E-value=1.8e+02 Score=21.63 Aligned_cols=45 Identities=9% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcc--HHHHHHHHHHHHH
Q 023697 134 DIEKLCVIKQEMIKDLNEINGDLAKARDE-SKD--MAAIKAEIETERQ 178 (278)
Q Consensus 134 ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~k--l~~LkaEIe~Lrq 178 (278)
+..++.+..+.|..++..|++++.++.+. ... ...++.=|+.|+.
T Consensus 2 ~~~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~ 49 (85)
T 3viq_B 2 EKSQLESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHT 49 (85)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
No 379
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=25.71 E-value=3.7e+02 Score=25.12 Aligned_cols=76 Identities=11% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhh-----hhchhhHHHHHHHHHhHH
Q 023697 136 EKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEK-----KNRASNHEQREIMEKNII 209 (278)
Q Consensus 136 ~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~raa~e~ek-----k~~~e~~eq~q~meknl~ 209 (278)
+.+...-+.|...+..+...|...+.+ ..+|...-.+|..+-++|..+-..|-.-+ ..-.+++.|+..+-..|-
T Consensus 67 ~~vl~~a~~La~~~n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~~~~~~~~g~~~ndLlDqRD~ll~eLS 146 (463)
T 2d4y_A 67 QALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISRMTGVGAGASPNDLLDQRDQLVSELN 146 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHhHHHHHHHHHHHH
Q ss_pred HH
Q 023697 210 SV 211 (278)
Q Consensus 210 ~m 211 (278)
.+
T Consensus 147 ~~ 148 (463)
T 2d4y_A 147 KI 148 (463)
T ss_dssp HH
T ss_pred hh
No 380
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=25.70 E-value=1.2e+02 Score=21.25 Aligned_cols=49 Identities=8% Similarity=0.186 Sum_probs=36.1
Q ss_pred hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHH
Q 023697 163 SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQ 214 (278)
Q Consensus 163 ~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e 214 (278)
.....+|..+|..++.|+-.+|..-- . +..++..+.+..-+++..+-..
T Consensus 8 ~~s~~EL~~~l~elk~ELf~LR~q~a--t-gql~n~~~ir~vRr~IARi~Tv 56 (67)
T 2zjr_V 8 NLQATDFAKEIDARKKELMELRFQAA--A-GQLAQPHRVRQLRREVAQLNTV 56 (67)
T ss_dssp TSCHHHHHHHHHTHHHHHHHHHHHHH--H-SCCCCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHH--h-CCCcccHHHHHHHHHHHHHHHH
Confidence 34457888888888888888884433 2 6678888888888887776553
No 381
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=25.68 E-value=2.2e+02 Score=24.62 Aligned_cols=38 Identities=29% Similarity=0.400 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 101 DAEVRELYEKSLK-LDAELRVIESMHAELDRVRADIEKL 138 (278)
Q Consensus 101 e~~~r~l~~k~~k-leaelr~~e~lk~El~qlr~ei~~l 138 (278)
+.+-..|.++.++ |+.-|..++.|..+|.++..+|..|
T Consensus 96 e~YWk~lAE~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~L 134 (209)
T 2wvr_A 96 SQYWKEVAEKRRKALYEALKENEKLHKEIEQKDNEIARL 134 (209)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555444433 3444555555555555544444443
No 382
>1pya_A Pyruvoyl-dependent histidine decarboxylase (L- histidine carboxylase); carboxy-lyase; 2.50A {Lactobacillus SP} SCOP: d.155.1.1 PDB: 1hq6_A 1ibv_A* 1ibu_A 1ibt_A* 1ibw_A*
Probab=25.25 E-value=21 Score=26.40 Aligned_cols=22 Identities=18% Similarity=0.455 Sum_probs=16.2
Q ss_pred CCCCccccCCCCCCCCCCCCCCCCCCCc
Q 023697 239 NPSTSYAASYGNPDPGFGGSLYADPYSM 266 (278)
Q Consensus 239 ~~~~~y~~~~gn~~~~~~~~~y~~~y~~ 266 (278)
+|+.-|...||||++ +|.||..
T Consensus 18 ~p~~~~c~GY~~pGa------~G~GYvs 39 (81)
T 1pya_A 18 SPYKQWTRGYMEPGN------IGNGYVT 39 (81)
T ss_dssp ESSSSCBEETTCTTC------BSSCEEE
T ss_pred CCchhhccccCCCCc------cccceEE
Confidence 677899999999942 5556653
No 383
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=25.20 E-value=2.4e+02 Score=21.84 Aligned_cols=63 Identities=6% Similarity=0.194 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hccHHHHHHHHHHHHHHHHhhhh
Q 023697 120 VIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-----SKDMAAIKAEIETERQEIHKGRA 185 (278)
Q Consensus 120 ~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-----~~kl~~LkaEIe~LrqEl~~~ra 185 (278)
.++.+..||.+.+. +|...+|.|....+..++|=.+.+.. .+-+..|+..|..|++.|..+.+
T Consensus 36 ~ieeLQ~Ei~~~E~---QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 36 TLQELQENITAHEQ---QLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555556555544 45555666665555555543333222 23356666666666666655443
No 384
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=25.05 E-value=2.8e+02 Score=22.53 Aligned_cols=37 Identities=14% Similarity=0.203 Sum_probs=17.8
Q ss_pred HHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhh
Q 023697 153 NGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIEC 189 (278)
Q Consensus 153 ekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ 189 (278)
++||.....+-+-+.--..=+..|+..|.++...|..
T Consensus 89 E~EL~~VceEQqfl~~QedL~~DL~eDL~ka~etf~l 125 (141)
T 3okq_A 89 EAELDKVCEEQQFLTLQEELILDLKEDLGKALETFDL 125 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444433333333333345566666666655543
No 385
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=24.95 E-value=1.4e+02 Score=23.06 Aligned_cols=37 Identities=5% Similarity=0.089 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKA 159 (278)
Q Consensus 123 ~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~ 159 (278)
.|++-..+++.-|..|...+=+|...|..-..||+++
T Consensus 46 ~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL 82 (107)
T 1ytz_T 46 KLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTL 82 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHH
Confidence 3444555555555555555555555555555554443
No 386
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=24.90 E-value=1.5e+02 Score=20.95 Aligned_cols=48 Identities=19% Similarity=0.207 Sum_probs=31.8
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHH
Q 023697 164 KDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQ 213 (278)
Q Consensus 164 ~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~ 213 (278)
....+|..+|..++.|+-.+|.. .=..+..++..+.+..-+++..+-.
T Consensus 12 ~s~~EL~~~l~elk~ELf~LR~q--~atggql~n~~~ir~vRr~IARi~T 59 (71)
T 1vq8_V 12 MTPAEREAELDDLKTELLNARAV--QAAGGAPENPGRIKELRKAIARIKT 59 (71)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHH--HHTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH--HHhcCCccChHHHHHHHHHHHHHHH
Confidence 34567777777888887777733 1111346788888888888777654
No 387
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=24.78 E-value=2.1e+02 Score=21.01 Aligned_cols=42 Identities=19% Similarity=0.395 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHH
Q 023697 139 CVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEI 180 (278)
Q Consensus 139 ~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl 180 (278)
-..-..|..+|..+..+|..++.++..+++|-.+...|..=|
T Consensus 33 L~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~laevl 74 (79)
T 2zxx_A 33 LKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVI 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555555555555555555554433
No 388
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=24.74 E-value=23 Score=27.03 Aligned_cols=35 Identities=20% Similarity=0.373 Sum_probs=24.6
Q ss_pred HHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhh
Q 023697 154 GDLAKARDESKDMAAIKAEIETERQEIHKGRAAIE 188 (278)
Q Consensus 154 kDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e 188 (278)
.+-++|-...=|+..|..||+.++.+|...++.|+
T Consensus 53 DEFAKWAKL~Rk~DKl~~ele~l~~~L~s~ks~fd 87 (94)
T 3vlc_E 53 DNYAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQ 87 (94)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTTHHHHTTTTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566777788888888888888777775
No 389
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=24.56 E-value=50 Score=29.12 Aligned_cols=15 Identities=13% Similarity=0.266 Sum_probs=1.9
Q ss_pred HHHHHHHHHHHHhhh
Q 023697 170 KAEIETERQEIHKGR 184 (278)
Q Consensus 170 kaEIe~LrqEl~~~r 184 (278)
+++|+.|+.++....
T Consensus 168 e~~Ie~Lk~e~~e~~ 182 (250)
T 2ve7_C 168 LMKLERLEKEVDEDT 182 (250)
T ss_dssp HHSCC----------
T ss_pred HHHHHHHHHHHhhhh
Confidence 333344444433333
No 390
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=24.28 E-value=3.2e+02 Score=23.00 Aligned_cols=33 Identities=12% Similarity=0.195 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023697 130 RVRADIEKLCVIKQEMIKDLNEINGDLAKARDE 162 (278)
Q Consensus 130 qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d 162 (278)
+.-..........+.|..+|.++..+|..+.-+
T Consensus 114 ~Ainny~~Ads~~~~lekKvn~aq~kLs~L~P~ 146 (201)
T 3u0c_A 114 KQINKLKNADSKIKDLENKINQIQTRLSELDPE 146 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSS
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 333344445555666677777777777776655
No 391
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=24.24 E-value=3.8e+02 Score=23.80 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=13.7
Q ss_pred chhhHHHHHHHHHhHHHHHHH
Q 023697 194 RASNHEQREIMEKNIISVAQQ 214 (278)
Q Consensus 194 ~~e~~eq~q~meknl~~m~~e 214 (278)
-...++.+|.||..-+..-++
T Consensus 233 ~~~~~~~~Q~lee~Rl~~lk~ 253 (350)
T 3aco_A 233 MEQVFEQCQQFEEKRLRFFRE 253 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888766555543
No 392
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=24.00 E-value=1.7e+02 Score=20.37 Aligned_cols=37 Identities=14% Similarity=0.330 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHhhh--hccHHHHHHHHHHHHHHH
Q 023697 144 EMIKDLNEINGDLAKARDE--SKDMAAIKAEIETERQEI 180 (278)
Q Consensus 144 eL~~evq~LekDL~~~~~d--~~kl~~LkaEIe~LrqEl 180 (278)
++...|..|++.|.++..+ =-+-..++.+|..|+..+
T Consensus 21 ~~~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~l 59 (63)
T 1e52_A 21 ALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 4566688888888887766 355667788888887654
No 393
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=23.95 E-value=1.4e+02 Score=18.57 Aligned_cols=24 Identities=13% Similarity=0.214 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 130 RVRADIEKLCVIKQEMIKDLNEIN 153 (278)
Q Consensus 130 qlr~ei~~l~~~rqeL~~evq~Le 153 (278)
|+...+++|.....+|..+|.++.
T Consensus 5 QledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 455555555555555555555554
No 394
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=23.94 E-value=3.1e+02 Score=22.70 Aligned_cols=30 Identities=7% Similarity=0.032 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 023697 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHV 73 (278)
Q Consensus 44 ~~~Le~~L~~q~~eIq~ll~dnqrla~~~~ 73 (278)
++.++.++..++..+.++..+.........
T Consensus 39 fe~~~~~f~~~e~~~~~l~k~~~~y~~~~~ 68 (244)
T 1uru_A 39 FDDHLNNFNRQQASANRLQKEFNNYIRCVR 68 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888877777777776665543
No 395
>1aa0_A Fibritin, gpwac E; bacteriophage T4, structural protein, bacteriophag assembly, attachment protein; 2.20A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=23.88 E-value=2e+02 Score=22.34 Aligned_cols=54 Identities=13% Similarity=0.156 Sum_probs=39.6
Q ss_pred HHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 90 SSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEIN 153 (278)
Q Consensus 90 ~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~Le 153 (278)
...-..++--+-.+-|.| +..++.+...|..+..++..+.....+|..+|+.|+
T Consensus 31 ~~i~GTNPNGsTVEERGl----------~nsVk~~et~i~~~t~~v~t~k~~i~~~e~~vqalq 84 (113)
T 1aa0_A 31 TLVNGTNPNGSTVEERGL----------TNSIKANETNIASVTQEVNTAKGNISSLQGDVQALQ 84 (113)
T ss_dssp HHHHCSCTTCSSHHHHCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeccccCCCCCeeecccc----------chhhhccccchhhhheeecccccchhhhhhhhHHHH
Confidence 333445555555666777 788888888888888888888888888888887775
No 396
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens}
Probab=23.83 E-value=5.8e+02 Score=25.81 Aligned_cols=17 Identities=12% Similarity=0.089 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHhhhh
Q 023697 80 SLAEQELRHLSSVAASV 96 (278)
Q Consensus 80 ~laqhEL~~l~~~i~~~ 96 (278)
=+.+|.|......+...
T Consensus 77 fLlq~~l~~~~~~~q~~ 93 (683)
T 1yvl_A 77 FLLQHNIRKSKRNLQDN 93 (683)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 46677777776666543
No 397
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=23.80 E-value=1.4e+02 Score=18.94 Aligned_cols=25 Identities=12% Similarity=0.242 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 121 IESMHAELDRVRADIEKLCVIKQEM 145 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL 145 (278)
.++.|.+|.+++..+..|..++-+|
T Consensus 10 LeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 10 LEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777666665544
No 398
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=23.79 E-value=3.8e+02 Score=23.74 Aligned_cols=26 Identities=12% Similarity=0.068 Sum_probs=12.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Q 023697 61 LLQDNQRLAATHVALKQELSLAEQEL 86 (278)
Q Consensus 61 ll~dnqrla~~~~~L~qEL~laqhEL 86 (278)
++.+...+..+...|..+-+.....|
T Consensus 44 ~~~el~~f~keRa~IE~eYak~L~kL 69 (350)
T 3aco_A 44 LCSDLMNCLHERARIEKAYAQQLTEW 69 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555443333
No 399
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=23.77 E-value=2.4e+02 Score=21.33 Aligned_cols=62 Identities=13% Similarity=0.272 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHH
Q 023697 119 RVIESMHAELDRVRADIEKLC----VIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEI 180 (278)
Q Consensus 119 r~~e~lk~El~qlr~ei~~l~----~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl 180 (278)
+=++.+..+.-.|+.....|. ..+.........+.+-|++|..+ ..++|=|+..|.-+....
T Consensus 20 ~F~d~Lq~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~~f~e~a~e~vp~L~~~i~vle~~~ 86 (94)
T 3fx7_A 20 RFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKERIRVLEEDY 86 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHhHHHH
Confidence 335667777777777777775 57888899999999999999988 889999999998887654
No 400
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=23.69 E-value=1.2e+02 Score=28.39 Aligned_cols=32 Identities=9% Similarity=0.207 Sum_probs=25.7
Q ss_pred hhhccHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 023697 161 DESKDMAAIKAEIETERQEIHKGRAAIECEKK 192 (278)
Q Consensus 161 ~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk 192 (278)
.|-.++.+|+.+++.++.++..+....+.++.
T Consensus 417 ~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 448 (468)
T 3pxg_A 417 QEFEKAASLRDTEQRLREQVEDTKKSWKEKQG 448 (468)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHSGGGHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34678889999999999999988887776554
No 401
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=23.68 E-value=1.3e+02 Score=27.59 Aligned_cols=13 Identities=31% Similarity=0.353 Sum_probs=4.1
Q ss_pred HHHHHHHHHHHHH
Q 023697 71 THVALKQELSLAE 83 (278)
Q Consensus 71 ~~~~L~qEL~laq 83 (278)
+|+.++.+|+...
T Consensus 3 ~~~~~~~~le~~~ 15 (323)
T 1lwu_B 3 THVNAQKEIENRY 15 (323)
T ss_dssp ----CHHHHHHHT
T ss_pred ccccHHHHHHHHH
Confidence 4555555544433
No 402
>2gr7_A Adhesin; trimeric autotransporter, adhesion, membrane protein, protei secretion, microbial pathogenesis; HET: C8E; 2.30A {Haemophilus influenzae} SCOP: d.24.1.4
Probab=23.57 E-value=25 Score=28.19 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhHHhhHHHHHH
Q 023697 211 VAQQIERLQAELANAEKRARAAAA 234 (278)
Q Consensus 211 m~~e~eklrael~n~~~r~~a~~~ 234 (278)
+...|..|.-.|-+.+|++++.+|
T Consensus 37 ~~~~in~L~~~I~~~~k~a~aGiA 60 (129)
T 2gr7_A 37 LAGQVNNLEGKVNKVGKRADAGTA 60 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777888877763
No 403
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=23.17 E-value=2.6e+02 Score=21.49 Aligned_cols=48 Identities=8% Similarity=0.029 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh--hccHHHHHHHHHHHHHHHHhhhhh
Q 023697 139 CVIKQEMIKDLNEINGDLAKARDE--SKDMAAIKAEIETERQEIHKGRAA 186 (278)
Q Consensus 139 ~~~rqeL~~evq~LekDL~~~~~d--~~kl~~LkaEIe~LrqEl~~~raa 186 (278)
.....++.+.|+.|++.+.+..-= .=.+..-...|..|+..|...|+.
T Consensus 57 ~~~ld~i~~~I~~Lqk~v~das~fLp~YD~R~~q~~i~~L~~~l~e~r~~ 106 (111)
T 2l3l_A 57 VERLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARLQAALAERRRG 106 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888888888888774421 112333444445555555444443
No 404
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=22.94 E-value=1.3e+02 Score=31.80 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023697 115 DAELRVIESMHAELDRVRADIE 136 (278)
Q Consensus 115 eaelr~~e~lk~El~qlr~ei~ 136 (278)
++-+++.+++..+|..++..+.
T Consensus 922 qal~KKhea~e~dl~a~e~ri~ 943 (1010)
T 1g8x_A 922 QAKLKNLEAFDGECQSLEGQSN 943 (1010)
T ss_dssp GGGTTSHHHHTTTTTHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3335666666666665555544
No 405
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=22.88 E-value=12 Score=35.10 Aligned_cols=47 Identities=9% Similarity=0.290 Sum_probs=3.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Q 023697 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETE 176 (278)
Q Consensus 124 lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~L 176 (278)
..++..+++..+++..+.|+++.++++..+.++ .++|.+++.+++.+
T Consensus 338 ~~~~~~e~~kklee~~~~r~e~~~~~~~~e~~~------~~~~~~~~~~~~~~ 384 (386)
T 2bnx_A 338 SEAKATELEKKLDSELTARHELQVEMKKMENDF------EQKLQDLQGEKDAL 384 (386)
T ss_dssp HHTTTCC----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH------HHHHHHHHHHHHhh
Confidence 344455667778888888888888888777654 35666666665544
No 406
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=22.79 E-value=3.4e+02 Score=22.69 Aligned_cols=40 Identities=28% Similarity=0.268 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhHhH---HHHHHHHHHHhhhhHHH
Q 023697 78 ELSLAEQELRHLSSVAASVKAER---DAEVRELYEKSLKLDAE 117 (278)
Q Consensus 78 EL~laqhEL~~l~~~i~~~~ae~---e~~~r~l~~k~~kleae 117 (278)
.|..-+.+|..+.........+. =.|+|+.+|++.-..+-
T Consensus 31 ~le~ek~~l~~~e~~r~k~~~h~~~k~~qlre~~d~gtt~~~i 73 (169)
T 3k29_A 31 LLELEQEKLRERESERDKVKNHYMQKIRQLREQLDDGTTSDAI 73 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 34444555555555444444443 34666776666554443
No 407
>3ret_A Salicylate biosynthesis protein PCHB; intertwined dimer, lyase, mutase; HET: SAL; 1.79A {Pseudomonas aeruginosa} SCOP: a.130.1.1 PDB: 2h9d_A 3rem_A* 3hgx_A* 3hgw_C 2h9c_A
Probab=22.68 E-value=1.2e+02 Score=22.56 Aligned_cols=36 Identities=14% Similarity=0.279 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 120 VIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGD 155 (278)
Q Consensus 120 ~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekD 155 (278)
..+.++.+|..+-.+|-.|-+.|-.+..+|..+.++
T Consensus 9 ~L~~lR~~ID~iD~~il~LL~~R~~~~~~i~~~K~~ 44 (101)
T 3ret_A 9 GLADIREAIDRIDLDIVQALGRRMDYVKAASRFEAS 44 (101)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 467888888888889999998888888888777654
No 408
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=22.44 E-value=18 Score=34.49 Aligned_cols=50 Identities=16% Similarity=0.354 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 023697 142 KQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEK 191 (278)
Q Consensus 142 rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~raa~e~ek 191 (278)
++.+..+|+.-++.+.++..+ ..+...++..++.-++++...+..+|.|+
T Consensus 343 ~~~f~~~v~~~e~~l~~~e~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~ 393 (427)
T 2qag_B 343 RQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEV 393 (427)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555444444 33344444444433344444444444444
No 409
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=22.39 E-value=1e+02 Score=21.31 Aligned_cols=31 Identities=6% Similarity=0.217 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 126 AELDRVRADIEKLCVIKQEMIKDLNEINGDL 156 (278)
Q Consensus 126 ~El~qlr~ei~~l~~~rqeL~~evq~LekDL 156 (278)
+.+..|+..+..|.....+|..+|..|...+
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555665555443
No 410
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=22.36 E-value=2.5e+02 Score=23.62 Aligned_cols=17 Identities=6% Similarity=0.055 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhhhhHHH
Q 023697 101 DAEVRELYEKSLKLDAE 117 (278)
Q Consensus 101 e~~~r~l~~k~~kleae 117 (278)
....|+++|...++-.+
T Consensus 209 ~~~~rdv~d~~~~~~e~ 225 (252)
T 3ck6_A 209 PHQYRFAHNNITRINET 225 (252)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34556665555544433
No 411
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=22.36 E-value=2.4e+02 Score=20.88 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=20.3
Q ss_pred HHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023697 105 RELYEKSLK-LDAELRVIESMHAELDRVRADIEKLCVIKQ 143 (278)
Q Consensus 105 r~l~~k~~k-leaelr~~e~lk~El~qlr~ei~~l~~~rq 143 (278)
..|.++..+ |+.-|..++.+..+|.+++.+|..|...-+
T Consensus 23 k~lAE~Rr~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~ 62 (83)
T 1wlq_A 23 KEVAEQRRKALYEALKENEKLHKEIEQKDSEIARLRKENK 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443332 344466666666666666666555544433
No 412
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=22.24 E-value=2.5e+02 Score=25.82 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh
Q 023697 166 MAAIKAEIETERQEIHKGRAAI 187 (278)
Q Consensus 166 l~~LkaEIe~LrqEl~~~raa~ 187 (278)
+..|+.+++.+.+++.++...+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~ 270 (426)
T 1lrz_A 249 IKELNEERDILNKDLNKALKDI 270 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444333
No 413
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=22.18 E-value=2.6e+02 Score=21.14 Aligned_cols=35 Identities=29% Similarity=0.360 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHH
Q 023697 73 VALKQELSLAEQELRHLSSVAASVKAERDAEVREL 107 (278)
Q Consensus 73 ~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l 107 (278)
+.-+.+|.-.+.+|..+...+.+-.++++..+|+|
T Consensus 17 K~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el 51 (101)
T 1d7m_A 17 KVSREQLIKQKDQLNSLLASLESEGAEREKRLREL 51 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455677777777777777777777777777777
No 414
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=22.14 E-value=4.2e+02 Score=23.61 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccHHHHHHHHH
Q 023697 143 QEMIKDLNEINGDLAKARDESKDMAAIKAEIE 174 (278)
Q Consensus 143 qeL~~evq~LekDL~~~~~d~~kl~~LkaEIe 174 (278)
++....+..+...|.++.....+|..+-.-|.
T Consensus 125 ~~~~~~~~~~~~~~~~l~~~~~~I~~i~~~I~ 156 (341)
T 3zx6_A 125 QRGGKVVDNVVQTMRDISTSSQKIADIISVID 156 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444333334443333333
No 415
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=21.97 E-value=49 Score=25.95 Aligned_cols=77 Identities=17% Similarity=0.216 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHH-HHHHHHHH
Q 023697 113 KLDAELRVIESMHAELDRVRADIEKL---------CVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEI-ETERQEIH 181 (278)
Q Consensus 113 kleaelr~~e~lk~El~qlr~ei~~l---------~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEI-e~LrqEl~ 181 (278)
+|+++ .....+||.....+++.+ ...++.+..+++.+.+++.++..+ .+.+...+.++ ..+...+.
T Consensus 27 ~l~~~---~~~~~~el~~~~~el~~~~~~lq~~ls~~~~~~~~~el~~~~~~~q~~~~~~~~~l~~~~~~~~~~i~~~i~ 103 (143)
T 1u2m_A 27 TLENE---FKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQ 103 (143)
T ss_dssp TTC------------------------------------------------------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhhhh
Q 023697 182 KGRAAIECEKK 192 (278)
Q Consensus 182 ~~raa~e~ekk 192 (278)
.+=..|--+++
T Consensus 104 ~ai~~vak~~g 114 (143)
T 1u2m_A 104 TAVKSVANSQD 114 (143)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHCC
No 416
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=21.87 E-value=2.4e+02 Score=22.43 Aligned_cols=36 Identities=8% Similarity=0.151 Sum_probs=22.2
Q ss_pred HHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhh
Q 023697 152 INGDLAKARDESKDMAAIKAEIETERQEIHKGRAAI 187 (278)
Q Consensus 152 LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~ 187 (278)
|.+++..-......|+.++++++.|.+++..+...+
T Consensus 3 L~~~~~~k~~~aa~L~~l~~ql~~l~~~l~~l~~~L 38 (147)
T 2rjz_A 3 LKQQFSTKAFQAANLEAYKAQMKEMEESFGALLRQL 38 (147)
T ss_dssp HHHHHHHTGGGCSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC
Confidence 344444444446777777777777777766555544
No 417
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=21.77 E-value=1.5e+02 Score=30.66 Aligned_cols=22 Identities=5% Similarity=-0.156 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023697 134 DIEKLCVIKQEMIKDLNEINGD 155 (278)
Q Consensus 134 ei~~l~~~rqeL~~evq~LekD 155 (278)
++.+|....+.+..+++++++.
T Consensus 801 ~~~rl~k~~~~~~~~~~~~~~~ 822 (862)
T 1gax_A 801 WRRRQEKRLKELLALAERSQRK 822 (862)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333333344443333
No 418
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=21.38 E-value=3.2e+02 Score=21.99 Aligned_cols=51 Identities=10% Similarity=0.158 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--ccHHHHHHHHHHHHHHHHhhhh
Q 023697 126 AELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDES--KDMAAIKAEIETERQEIHKGRA 185 (278)
Q Consensus 126 ~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~--~kl~~LkaEIe~LrqEl~~~ra 185 (278)
+++.+++..++++...|..+.+-+...- + +.+.++...|=.+|+-+.....
T Consensus 59 kql~~Ake~~eKlkKKrsSv~gs~~~aH---------s~~sslD~vD~~Il~Ak~aL~evt~ 111 (136)
T 3ter_A 59 KEMKEAIEMVDRLQKKQGSVLSSLKLAT---------GAASTSDQVDSKIFALKSRMEKIHT 111 (136)
T ss_dssp HHHHHHHHHHHHHHHC------CCCCCC---------SSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhchheeeeeec---------CCCCchHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666555544322111 3 5555555555555555544443
No 419
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=21.34 E-value=6.1e+02 Score=25.13 Aligned_cols=55 Identities=20% Similarity=0.308 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 023697 168 AIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAEL 222 (278)
Q Consensus 168 ~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael 222 (278)
.|...|++++++|+++-...+--..--...+.+++..+.|+...-.+++..=.++
T Consensus 634 ~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 688 (695)
T 2j69_A 634 RINDDIVSRKSELDNLVKQKQTREINRESEFNRLKNLQEDVIAQLQKIEAAYSNL 688 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777776666666677788888877666555555444444
No 420
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=21.15 E-value=4.7e+02 Score=23.76 Aligned_cols=16 Identities=0% Similarity=0.356 Sum_probs=7.7
Q ss_pred HHHHHHHHHhhhhhhh
Q 023697 173 IETERQEIHKGRAAIE 188 (278)
Q Consensus 173 Ie~LrqEl~~~raa~e 188 (278)
|+.|+++|..++..|.
T Consensus 178 I~~Lq~eI~~l~~~I~ 193 (346)
T 2nrj_A 178 VDADQKRLEEVLGSVN 193 (346)
T ss_dssp HHHHHHHHHHHTGGGC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444444
No 421
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=21.10 E-value=2.9e+02 Score=21.27 Aligned_cols=67 Identities=12% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhh
Q 023697 120 VIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIEC 189 (278)
Q Consensus 120 ~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ 189 (278)
.+..+-.|-..+.=+|.-|.....++......+.++..+-..+ +..++..+..|+.++..++..+..
T Consensus 17 snAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re---~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 17 SNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKE---FEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
No 422
>3iz5_c 60S ribosomal protein L35 (L29P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2j37_5 2go5_5 3izr_c
Probab=20.84 E-value=3.1e+02 Score=21.63 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=34.4
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHH
Q 023697 164 KDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQ 213 (278)
Q Consensus 164 ~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~ 213 (278)
....+|..+|..++.|+-.+|..--- +..++..+...+-+++..+-.
T Consensus 14 ~s~eEL~~~L~eLK~ELf~LRfq~at---gqlen~~rIr~vRRdIARi~T 60 (124)
T 3iz5_c 14 KSKDDLTKQLAELKTELGQLRIQKVA---SSGSKLNRIHDIRKSIARVLT 60 (124)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHh---CCccchHHHHHHHHHHHHHHH
Confidence 34567888888888888887765432 366888888888888887765
No 423
>3i9w_A Sensor protein TORS; stacked two four-helix bundles, ATP-binding, cell inner membrane, cell membrane, kinase, membrane; 2.70A {Escherichia coli k-12}
Probab=20.68 E-value=4.6e+02 Score=23.50 Aligned_cols=87 Identities=21% Similarity=0.242 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh---hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHH
Q 023697 140 VIKQEMIKDLNEINGDLAKARDE---SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIE 216 (278)
Q Consensus 140 ~~rqeL~~evq~LekDL~~~~~d---~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~e 216 (278)
.....|..++..|..-|+.+... ...+..|..+|. ..=+....-=+.+..+-.+.+..-+.+..-+.+++
T Consensus 50 ~~gr~L~~~~~~l~~~i~~L~~~~~~~~~l~~l~~~I~-------~~L~~lg~~V~~RL~L~~~~~~~~~~l~~aa~~l~ 122 (290)
T 3i9w_A 50 AQGRMLTAQSLKINALLQALREQGFDTTAIEQQEQEIS-------RSLRQQGELVGQRLQLRQQQQQLSQQIVAAADEIA 122 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455777777777777777655 233444444333 22233333334556677777888888888888887
Q ss_pred HH-HHHHHhHHhhHHHHH
Q 023697 217 RL-QAELANAEKRARAAA 233 (278)
Q Consensus 217 kl-rael~n~~~r~~a~~ 233 (278)
.| |++++|++.++-|..
T Consensus 123 eL~~tqvaNa~t~~~A~l 140 (290)
T 3i9w_A 123 RLAQGQANNATTSAGATQ 140 (290)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 65 999999998876654
No 424
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=20.56 E-value=3.2e+02 Score=21.64 Aligned_cols=64 Identities=16% Similarity=0.261 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 023697 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEK 191 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~raa~e~ek 191 (278)
+|++-..+-....++.++....--|...++.+. ++ ..-|..|..++.++++-.-.-|.+++|--
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~ig~L~~~l~~~a-------N~T~~aL~~L~~q~Tslr~~~LQNRraLD~Ll 87 (125)
T 4g2k_A 23 IEEILSKIYHIENEIARIKKLIGNLVSRLRRLA-------NQTAKSLELLLRVTTEERTFSLINRHAIDFLL 87 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555554444555555443 33 67789999999999999999999999865
No 425
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=20.35 E-value=89 Score=21.69 Aligned_cols=45 Identities=9% Similarity=0.130 Sum_probs=28.2
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHH
Q 023697 165 DMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVA 212 (278)
Q Consensus 165 kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~ 212 (278)
...+|..+|..++.|+-.+|..--- +..++..+.+..-+++..+-
T Consensus 10 s~~EL~~~l~elk~Elf~LR~q~at---gql~n~~~ir~vRr~IARi~ 54 (63)
T 3r8s_Y 10 SVEELNTELLNLLREQFNLRMQAAS---GQLQQSHLLKQVRRDVARVK 54 (63)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHT---TCCSCGGGTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh---CCCcCcHHHHHHHHHHHHHH
Confidence 3466777777777777776654333 45566666666666665553
No 426
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=20.33 E-value=3.6e+02 Score=22.08 Aligned_cols=37 Identities=14% Similarity=0.167 Sum_probs=29.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 023697 62 LQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKA 98 (278)
Q Consensus 62 l~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~a 98 (278)
+..-+.+...|..|+++|..-...+..+......+..
T Consensus 37 l~~ve~llkkH~~le~ei~~~~~~v~~l~~~a~~l~~ 73 (210)
T 3pdy_A 37 LPSVEAQLGSHRGLHQSIEEFRAKIERARSDEGQLSP 73 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 3447788899999999999999889888777765543
No 427
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=20.26 E-value=4.2e+02 Score=26.89 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHH
Q 023697 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEI 173 (278)
Q Consensus 127 El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEI 173 (278)
+|......|++....|.+|..+++........+..+..+...+-++|
T Consensus 11 dl~~i~~~i~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 57 (706)
T 3fhn_A 11 DLLNINDRIKQVQNERNELASKLQNLKQSLASNDTEVALSEVIAQDI 57 (706)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCCCHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence 45566778888888899999999998887766666666766665555
No 428
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=20.22 E-value=2.8e+02 Score=20.88 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023697 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (278)
Q Consensus 118 lr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~ 160 (278)
+..+++-.+++.+++..+.+|...-++|..-|..--.-+.+..
T Consensus 13 l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie 55 (109)
T 3hd7_B 13 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIE 55 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 5666777777777777777777666666666655444444433
No 429
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=20.14 E-value=1.8e+02 Score=18.60 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhh
Q 023697 167 AAIKAEIETERQEIHKGRAAIECEKK 192 (278)
Q Consensus 167 ~~LkaEIe~LrqEl~~~raa~e~ekk 192 (278)
.+--+|++.|+.-+.-+.+.+|+|-.
T Consensus 16 eernaelknlkehlkfakaelefela 41 (46)
T 3he4_B 16 EERNAELKNLKEHLKFAKAELEFELA 41 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHhHHHHHHHHHHHHHHHHH
Confidence 33445556666666666666666543
No 430
>1fzc_A Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: h.1.8.1 PDB: 1fzb_A* 1fza_A* 1fze_A* 1fzf_A* 1fzg_A* 1n86_A* 2h43_A* 2hlo_A* 2hod_A* 2hpc_A* 2q9i_A* 2xnx_A 2xny_A 2z4e_A* 3e1i_A* 1n8e_A 2oyh_A* 1ltj_A* 1lt9_A* 1re4_A* ...
Probab=20.13 E-value=1.4e+02 Score=22.30 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=33.0
Q ss_pred hhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 023697 182 KGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAEL 222 (278)
Q Consensus 182 ~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael 222 (278)
.+|.-|++.|..-.+++.+..++.+|...=..|+-.|.-+|
T Consensus 4 dLrrrI~~LkrkV~~q~~~i~~Lq~nvr~Q~vemkRLEVDI 44 (87)
T 1fzc_A 4 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 44 (87)
T ss_dssp -----CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 46788999999999999999999999988888888888877
Done!