BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023698
(278 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255568954|ref|XP_002525447.1| endonuclease, putative [Ricinus communis]
gi|223535260|gb|EEF36937.1| endonuclease, putative [Ricinus communis]
Length = 275
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 193/283 (68%), Positives = 221/283 (78%), Gaps = 15/283 (5%)
Query: 1 MAQITSQGGLNLLFNGDGSSFGVEPRDPFQYKLGSGL----RSIEVHKRKL--IRPRNGV 54
MAQ T+QG L LLFN DG + LG+G S V K K I +
Sbjct: 1 MAQFTAQGRLKLLFNSDGIQCKL---------LGNGFVGGCTSFRVQKGKFRYIGSSTRL 51
Query: 55 WSSMNKKKSSKFSVDASLNVSGKGISGESEEYDSDEEFDELACFRGLVLDISYRPVNVVC 114
+S KKS F+ +ASLN + GESE+YDS+ E D+LACFRGLVLDISYRPVNVVC
Sbjct: 52 HASSVSKKSRHFNAEASLNAEEENDIGESEDYDSEYETDDLACFRGLVLDISYRPVNVVC 111
Query: 115 WKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLM 174
WKRAICLEFMEKADVLEYYDQT+NSP+GSFYIPAVLRV HLLQVVKRRRIK+NLSRKN++
Sbjct: 112 WKRAICLEFMEKADVLEYYDQTVNSPSGSFYIPAVLRVPHLLQVVKRRRIKSNLSRKNVL 171
Query: 175 YRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSR 234
+RDN+TCQYCSSRENLTIDHV+P +RGG+W WENLV AC KCNS+KG+KT EEANM+L +
Sbjct: 172 HRDNYTCQYCSSRENLTIDHVLPTARGGQWTWENLVTACSKCNSKKGQKTPEEANMKLIK 231
Query: 235 VPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYLPQHSLE 277
VPKAPK+YDILAIPLTSAAIRMLR+RKG P EWRQYL + S E
Sbjct: 232 VPKAPKEYDILAIPLTSAAIRMLRMRKGMPEEWRQYLARPSSE 274
>gi|225441641|ref|XP_002282210.1| PREDICTED: uncharacterized protein LOC100264031 [Vitis vinifera]
Length = 277
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 193/281 (68%), Positives = 217/281 (77%), Gaps = 10/281 (3%)
Query: 1 MAQITSQGGLNLLFNGDGSSFGVEPRDPFQ-YKLGSGL-RSIEVHKRKL-IRPRNGVWSS 57
MAQ T+QG G GVEP+DP+ YK G G +H KL ++SS
Sbjct: 2 MAQFTAQG------QGRLKPLGVEPKDPYHCYKFGGGCWPRFRIHSPKLGFLDSTKLYSS 55
Query: 58 MNKKKSSKFSVDASLNVSGKGISGES-EEYDSDEEFDELACFRGLVLDISYRPVNVVCWK 116
KS+ F A LNV KGI + D + E DELACFRGLVLD+SYRPVNVVCW+
Sbjct: 56 SLNTKSNHFRAQARLNVGDKGIYDDDVHAGDGEFEMDELACFRGLVLDLSYRPVNVVCWR 115
Query: 117 RAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYR 176
RAICLEFMEKADVLEYYDQT+NSP+GSFYIPAVLRV HLLQVVKRRRIKNNLSRKN+ YR
Sbjct: 116 RAICLEFMEKADVLEYYDQTVNSPSGSFYIPAVLRVPHLLQVVKRRRIKNNLSRKNIFYR 175
Query: 177 DNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVP 236
DNFTCQYCSS ENLT+DHV+P +RGGEWKWENLV AC KCNS+KG+KTLEEANM+LS+VP
Sbjct: 176 DNFTCQYCSSGENLTVDHVLPIARGGEWKWENLVTACAKCNSKKGQKTLEEANMKLSKVP 235
Query: 237 KAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYLPQHSLE 277
KAPKDYDILAIPLT+ AIRMLR+RKGTP EWRQYL + S E
Sbjct: 236 KAPKDYDILAIPLTNTAIRMLRMRKGTPEEWRQYLSKPSAE 276
>gi|449446780|ref|XP_004141149.1| PREDICTED: uncharacterized protein LOC101207660 [Cucumis sativus]
Length = 277
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/277 (66%), Positives = 221/277 (79%), Gaps = 10/277 (3%)
Query: 1 MAQITSQGGLNLLFNGDGSSFGVEPRDPFQYKLGSGLRSIEVHKRKLIRPRNGVWSSMNK 60
MAQ T+ L LL NGDG FG E +D F+YKL RS+ + L RP + SS +
Sbjct: 1 MAQFTAHTRLKLLLNGDGLPFGSESKDRFRYKL----RSVRPRRFPLSRPSSSTTSSTSA 56
Query: 61 -KKSSKFSVDASLNVSGKGISGESEE-----YDSDEEFDELACFRGLVLDISYRPVNVVC 114
+K ++ + + + V + ++G ++ YD + E D+LACFRGLVLDISYRPVNVVC
Sbjct: 57 LRKPTQHAAEVRVGVRDESVNGGDDDVVGFDYDYELESDDLACFRGLVLDISYRPVNVVC 116
Query: 115 WKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLM 174
WKRAICLEFMEKADVLEYYDQT+NSP+GSFYIPAVLRV HLLQVVKRRRIKN+LSRKN++
Sbjct: 117 WKRAICLEFMEKADVLEYYDQTVNSPSGSFYIPAVLRVPHLLQVVKRRRIKNSLSRKNIL 176
Query: 175 YRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSR 234
YRDN+TCQYCSS E+LTIDHV+P SRGGEW WENLVAAC KCNS+KG+KT+EEANM+L +
Sbjct: 177 YRDNYTCQYCSSHESLTIDHVLPISRGGEWTWENLVAACVKCNSKKGQKTVEEANMKLKK 236
Query: 235 VPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
PKAPKDYDILAIPLTS AI+ML++RKGTP EWRQYL
Sbjct: 237 TPKAPKDYDILAIPLTSTAIKMLKLRKGTPEEWRQYL 273
>gi|224123804|ref|XP_002319168.1| predicted protein [Populus trichocarpa]
gi|222857544|gb|EEE95091.1| predicted protein [Populus trichocarpa]
Length = 272
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 193/282 (68%), Positives = 222/282 (78%), Gaps = 16/282 (5%)
Query: 1 MAQITSQGGLNLLFNGDGSSFGVEPRDPFQYKLGSGLRSIEVHKRKL-----IRPRNGVW 55
MAQ T+ G L FN DG+S+ + D GLRS + KRK+ R
Sbjct: 1 MAQFTAHGRLKFPFNNDGASWKLLGND-----FVGGLRSFQNQKRKIRFLGTSGTRLYAA 55
Query: 56 SSMNKKKSSKFSVDASLNVSGKGISGESEEYDSDEEFDELACFRGLVLDISYRPVNVVCW 115
SS++KK F +AS +VS ++ +SEE D E DELACFRGLVLDISYRPVNVVCW
Sbjct: 56 SSLSKK-PKHFYTEASQSVSE--VNDDSEE---DYERDELACFRGLVLDISYRPVNVVCW 109
Query: 116 KRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMY 175
+RAICLEFMEKADVLEYYDQ +NSP+GSFYIPAVLRV HLLQVVKRRRIK+NLSRKN++Y
Sbjct: 110 RRAICLEFMEKADVLEYYDQAVNSPSGSFYIPAVLRVPHLLQVVKRRRIKSNLSRKNILY 169
Query: 176 RDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRV 235
RDN+TCQYCSSRENLTIDHV+P +RGGEWKWENLVAAC KCNS+KG+KT EEANM+LS+V
Sbjct: 170 RDNYTCQYCSSRENLTIDHVLPTARGGEWKWENLVAACAKCNSKKGQKTPEEANMKLSKV 229
Query: 236 PKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYLPQHSLE 277
PKAPKDYDILAIPLTSAAIRMLR+RKG P EW+QYL + S E
Sbjct: 230 PKAPKDYDILAIPLTSAAIRMLRMRKGMPEEWQQYLARPSSE 271
>gi|297739746|emb|CBI29928.3| unnamed protein product [Vitis vinifera]
Length = 187
Score = 343 bits (880), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 159/186 (85%), Positives = 174/186 (93%)
Query: 92 FDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLR 151
DELACFRGLVLD+SYRPVNVVCW+RAICLEFMEKADVLEYYDQT+NSP+GSFYIPAVLR
Sbjct: 1 MDELACFRGLVLDLSYRPVNVVCWRRAICLEFMEKADVLEYYDQTVNSPSGSFYIPAVLR 60
Query: 152 VRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVA 211
V HLLQVVKRRRIKNNLSRKN+ YRDNFTCQYCSS ENLT+DHV+P +RGGEWKWENLV
Sbjct: 61 VPHLLQVVKRRRIKNNLSRKNIFYRDNFTCQYCSSGENLTVDHVLPIARGGEWKWENLVT 120
Query: 212 ACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
AC KCNS+KG+KTLEEANM+LS+VPKAPKDYDILAIPLT+ AIRMLR+RKGTP EWRQYL
Sbjct: 121 ACAKCNSKKGQKTLEEANMKLSKVPKAPKDYDILAIPLTNTAIRMLRMRKGTPEEWRQYL 180
Query: 272 PQHSLE 277
+ S E
Sbjct: 181 SKPSAE 186
>gi|356571688|ref|XP_003554006.1| PREDICTED: uncharacterized protein LOC100787021 isoform 1 [Glycine
max]
gi|356571690|ref|XP_003554007.1| PREDICTED: uncharacterized protein LOC100787021 isoform 2 [Glycine
max]
Length = 288
Score = 338 bits (868), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 177/290 (61%), Positives = 205/290 (70%), Gaps = 24/290 (8%)
Query: 1 MAQITSQGGLNLLFNGDGSSFGVEPRDPFQYKLGSGLRSIEVHKRKLIRPRNGVWSSMNK 60
MAQ T+QG L LL NG+G S +E +DPF YK RS++ HKR+ R
Sbjct: 1 MAQFTTQGRLKLLLNGEGVSSVLEHKDPFLYKC----RSVQTHKRR-TRYAGSSARIYYA 55
Query: 61 KKSSKFSVDASLNVSGKGISGESEEYDSDE-------------------EFDELACFRGL 101
SS S N + SG +D + + D L+CFRGL
Sbjct: 56 STSSLSSKSHRCNAEARHTSGNGSVHDEYDDIDDDEDEDDEEEEEEDVFDRDGLSCFRGL 115
Query: 102 VLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKR 161
VLDI+YRPVNVV WKRAICLEFMEKADVLEYY +T+NSP+GSFYIPAVLRV HLLQVVKR
Sbjct: 116 VLDIAYRPVNVVGWKRAICLEFMEKADVLEYYAKTVNSPSGSFYIPAVLRVPHLLQVVKR 175
Query: 162 RRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
R IKNNLSRKN+++RDN+TCQYCSS ENLTIDHVVPA+ GGEW WENLV AC KCN +KG
Sbjct: 176 RIIKNNLSRKNILFRDNYTCQYCSSHENLTIDHVVPAALGGEWTWENLVTACAKCNCKKG 235
Query: 222 KKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
+KTLEEA M+L + PK PKDYDILAIPLT+AA+RML +RKGTP EWRQYL
Sbjct: 236 RKTLEEAKMKLIKPPKVPKDYDILAIPLTAAALRMLTIRKGTPEEWRQYL 285
>gi|224145957|ref|XP_002325827.1| predicted protein [Populus trichocarpa]
gi|222862702|gb|EEF00209.1| predicted protein [Populus trichocarpa]
Length = 194
Score = 334 bits (857), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 159/195 (81%), Positives = 179/195 (91%), Gaps = 3/195 (1%)
Query: 84 EEYDSDEEFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGS 143
E+YDS E DELACFRGLVLDISYRPVNVVCWKRA+CLEFMEKADVLEYYDQ +NSP+GS
Sbjct: 2 EDYDS--ERDELACFRGLVLDISYRPVNVVCWKRAMCLEFMEKADVLEYYDQAVNSPSGS 59
Query: 144 FYIPAVLRVRHLLQVVKRRRI-KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGG 202
FYIPAVLRV HLLQVVKRRRI ++ LSRKN+++RDN+TCQYCSSRENLTIDHV+P ++GG
Sbjct: 60 FYIPAVLRVPHLLQVVKRRRIFRSKLSRKNILHRDNYTCQYCSSRENLTIDHVLPTAQGG 119
Query: 203 EWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKG 262
EW+WENLV AC KCNS+KGKKT EEANM+LS+VPKAPKDYDILAIPLTSAAIRMLR+RKG
Sbjct: 120 EWQWENLVTACAKCNSKKGKKTPEEANMKLSKVPKAPKDYDILAIPLTSAAIRMLRIRKG 179
Query: 263 TPVEWRQYLPQHSLE 277
P EW+QYL + S E
Sbjct: 180 MPEEWQQYLARPSSE 194
>gi|356560967|ref|XP_003548757.1| PREDICTED: uncharacterized protein LOC100810482 [Glycine max]
Length = 282
Score = 333 bits (854), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 176/283 (62%), Positives = 209/283 (73%), Gaps = 16/283 (5%)
Query: 1 MAQITSQGGLNLLFNGDGSSFGVEP-RDPFQYKLGSGLRSIEVHKRKLIR-----PRNGV 54
MAQ T+QG L LLFNG+G S +E +DPF Y + RS++ HKR+ R R
Sbjct: 1 MAQFTTQGRLKLLFNGEGVSSVLEHNKDPFLY---NKCRSVQTHKRRTTRCIGSSARIYY 57
Query: 55 WSSMNKKKSSKFSVDASLNVSGKG------ISGESEEYDSDEEFDELACFRGLVLDISYR 108
SS K+ + +A L SG G ++ D + D L+CFRGLVLDI+YR
Sbjct: 58 VSSSLSNKTHLCNAEAWL-TSGNGSVHDEYDDDVEDDDDDVFDRDGLSCFRGLVLDIAYR 116
Query: 109 PVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNL 168
PVNVV WKRAICLEFMEKADVLEYY +T+NSP+GSFYIPAVLRV LLQVVKRR +KNNL
Sbjct: 117 PVNVVGWKRAICLEFMEKADVLEYYAKTVNSPSGSFYIPAVLRVPQLLQVVKRRIVKNNL 176
Query: 169 SRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEA 228
SRKN+++RDN+TCQYCSS ENLTIDHV+P + GGEW WENLV AC KCN +KG+KTLEEA
Sbjct: 177 SRKNILFRDNYTCQYCSSHENLTIDHVMPTALGGEWTWENLVTACAKCNCKKGRKTLEEA 236
Query: 229 NMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
M+L + PK PKDYDILAIPLT+AA+RML +RKGTP EWRQYL
Sbjct: 237 KMKLIKPPKVPKDYDILAIPLTAAALRMLTLRKGTPEEWRQYL 279
>gi|297853378|ref|XP_002894570.1| HNH endonuclease domain-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297340412|gb|EFH70829.1| HNH endonuclease domain-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 283
Score = 332 bits (852), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 169/280 (60%), Positives = 210/280 (75%), Gaps = 9/280 (3%)
Query: 1 MAQITSQGGLNLLFNGDGSSFGVEPRDPFQ---YKLGSGLRSIEVHKRKL---IRPRNGV 54
MA +S+ L LL + DG SFGV+ RD F+ Y G G + + + +L R +
Sbjct: 1 MAHFSSR--LKLLSSNDGLSFGVDSRDQFRQSLYMAGGGTPLVSIRRSRLKFCARIFSSY 58
Query: 55 WSSMNKKKSSKF-SVDASLNVSGKGISGESEEYDSDEEFDELACFRGLVLDISYRPVNVV 113
+KK F + + +L + + + D E D+L+CFRGLVLDISYRPVNVV
Sbjct: 59 SFPYKRKKIRDFDNTEKNLGIDEDNDDWDFDGDDDVLETDDLSCFRGLVLDISYRPVNVV 118
Query: 114 CWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNL 173
CWKRAICLE+M+KADVLEYYDQT++SP GSFYIPAVLRV HLLQVVKRRR+KN+LSRKN+
Sbjct: 119 CWKRAICLEYMDKADVLEYYDQTVSSPTGSFYIPAVLRVPHLLQVVKRRRVKNSLSRKNI 178
Query: 174 MYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLS 233
+ RD++TCQYCSSRENLTIDHV+P SRGGEW W+NLVAAC +CNS+KG+KT EEA+M+L
Sbjct: 179 LLRDDYTCQYCSSRENLTIDHVMPVSRGGEWSWQNLVAACSRCNSKKGQKTAEEAHMKLL 238
Query: 234 RVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYLPQ 273
+VPK PKDYDI+AIPLT+AAIRMLR KG P EWR+YL +
Sbjct: 239 KVPKEPKDYDIVAIPLTNAAIRMLRSNKGMPEEWRRYLAK 278
>gi|30682222|ref|NP_179964.2| HNH endonuclease [Arabidopsis thaliana]
gi|38603958|gb|AAR24724.1| At2g23840 [Arabidopsis thaliana]
gi|44681452|gb|AAS47666.1| At2g23840 [Arabidopsis thaliana]
gi|330252404|gb|AEC07498.1| HNH endonuclease [Arabidopsis thaliana]
Length = 284
Score = 330 bits (845), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 170/281 (60%), Positives = 211/281 (75%), Gaps = 10/281 (3%)
Query: 1 MAQITSQGGLNLLFNGDGSSFGVEPRDPFQYKL-----GSGLRSIEVHKRKLIRPRNGVW 55
MA +++ L LL + DG SFGV+ RD F+ L GS L I + + K +
Sbjct: 1 MAHFSAR--LKLLSSNDGLSFGVDSRDQFRQSLYMAGGGSPLVPIRMSRLKFCARIFSSY 58
Query: 56 SSMNKKKSSKF--SVDASLNVSGKGISGESEEYDSDEEFDE-LACFRGLVLDISYRPVNV 112
S K+K + + + +L++ + + D E D+ L+CFRGLVLDISYRPVNV
Sbjct: 59 SFPYKRKKIRDLDNTEKNLDIDEDNDEWDFDGDDDGLETDDHLSCFRGLVLDISYRPVNV 118
Query: 113 VCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKN 172
VCWKRAICLE+M+KADVLEYYDQT++SP GSFYIPAVLRV HLLQVVKRRR+KN+LSRKN
Sbjct: 119 VCWKRAICLEYMDKADVLEYYDQTVSSPTGSFYIPAVLRVPHLLQVVKRRRVKNSLSRKN 178
Query: 173 LMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQL 232
++ RD++TCQYCSSRENLTIDHV+P SRGGEW W+NLVAAC +CNSRKG+KT +EA+M+L
Sbjct: 179 ILLRDDYTCQYCSSRENLTIDHVMPVSRGGEWTWQNLVAACSRCNSRKGQKTADEAHMKL 238
Query: 233 SRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYLPQ 273
+VPK PKDYDI+AIPLT+AAIRMLR KG P EWRQYL +
Sbjct: 239 LKVPKEPKDYDIVAIPLTNAAIRMLRSNKGMPEEWRQYLAK 279
>gi|357508647|ref|XP_003624612.1| hypothetical protein MTR_7g085420 [Medicago truncatula]
gi|124365579|gb|ABN09813.1| HNH nuclease [Medicago truncatula]
gi|355499627|gb|AES80830.1| hypothetical protein MTR_7g085420 [Medicago truncatula]
Length = 273
Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 172/286 (60%), Positives = 204/286 (71%), Gaps = 31/286 (10%)
Query: 1 MAQITSQGGLNLLFNGDGSSFGVEPRDPFQYKLGSGLRSIEVHKRKLIRPRNGVWSSMNK 60
MAQ T+QG L LLFNG+ S + ++ HKR+ + ++S
Sbjct: 1 MAQFTAQGRLKLLFNGETVSSLM----------------VQTHKRRTSYKGSSSFASRFH 44
Query: 61 KKSSKF--SVDASLNVSGKGISGESEEY------------DSDEEFDELACFRGLVLDIS 106
SS + S N + G +EY D E D L+ FRGLVLDIS
Sbjct: 45 YASSSYLRSKVKCCNAEARPSEGVHDEYAYVFEYDEDDDDDDVFEGDGLSGFRGLVLDIS 104
Query: 107 YRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI-K 165
YRPVNVVCWKRAICLEFMEKADVLEYYD+T+NSP+GSFYIPAVLRVRHLLQV+KRRR+ K
Sbjct: 105 YRPVNVVCWKRAICLEFMEKADVLEYYDKTVNSPSGSFYIPAVLRVRHLLQVIKRRRVVK 164
Query: 166 NNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTL 225
N+LSRKN+++RDN+TCQYCSS ENLTIDHVVPA+ GGEW WENLV AC KCNS+KG+K+L
Sbjct: 165 NSLSRKNILFRDNYTCQYCSSHENLTIDHVVPAALGGEWTWENLVTACSKCNSKKGRKSL 224
Query: 226 EEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
EEA M+L +VPK PKDYDILAIPLT+AA+R+L RKGTP EWRQYL
Sbjct: 225 EEAKMKLMKVPKKPKDYDILAIPLTAAALRVLTARKGTPDEWRQYL 270
>gi|388522185|gb|AFK49154.1| unknown [Medicago truncatula]
Length = 273
Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 172/286 (60%), Positives = 204/286 (71%), Gaps = 31/286 (10%)
Query: 1 MAQITSQGGLNLLFNGDGSSFGVEPRDPFQYKLGSGLRSIEVHKRKLIRPRNGVWSSMNK 60
MAQ T+QG L LLFNG+ S + ++ HKR+ + ++S
Sbjct: 1 MAQFTAQGRLKLLFNGETVSSLM----------------VQAHKRRTSYKGSSSFASRFH 44
Query: 61 KKSSKF--SVDASLNVSGKGISGESEEY------------DSDEEFDELACFRGLVLDIS 106
SS + S N + G +EY D E D L+ FRGLVLDIS
Sbjct: 45 YASSSYLRSKVKCCNAEARPSEGVHDEYAYVFEYDEDDDDDDVFEGDGLSGFRGLVLDIS 104
Query: 107 YRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI-K 165
YRPVNVVCWKRAICLEFMEKADVLEYYD+T+NSP+GSFYIPAVLRVRHLLQV+KRRR+ K
Sbjct: 105 YRPVNVVCWKRAICLEFMEKADVLEYYDKTVNSPSGSFYIPAVLRVRHLLQVIKRRRVVK 164
Query: 166 NNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTL 225
N+LSRKN+++RDN+TCQYCSS ENLTIDHVVPA+ GGEW WENLV AC KCNS+KG+K+L
Sbjct: 165 NSLSRKNILFRDNYTCQYCSSHENLTIDHVVPAALGGEWTWENLVTACSKCNSKKGRKSL 224
Query: 226 EEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
EEA M+L +VPK PKDYDILAIPLT+AA+R+L RKGTP EWRQYL
Sbjct: 225 EEAKMKLMKVPKKPKDYDILAIPLTAAALRVLTARKGTPDEWRQYL 270
>gi|449489536|ref|XP_004158341.1| PREDICTED: uncharacterized protein LOC101226520 [Cucumis sativus]
Length = 250
Score = 312 bits (799), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 156/246 (63%), Positives = 191/246 (77%), Gaps = 10/246 (4%)
Query: 1 MAQITSQGGLNLLFNGDGSSFGVEPRDPFQYKLGSGLRSIEVHKRKLIRPRNGVWSSMNK 60
MAQ T+ L LL NGDG FG E +D F+YKL RS+ + L RP + SS +
Sbjct: 1 MAQFTAHTRLKLLLNGDGLPFGSESKDRFRYKL----RSVRPRRFPLSRPSSSTTSSTSA 56
Query: 61 -KKSSKFSVDASLNVSGKGISGESEE-----YDSDEEFDELACFRGLVLDISYRPVNVVC 114
+K ++ + + + V + ++G ++ YD + E D+LACFRGLVLDISYRPVNVVC
Sbjct: 57 LRKPTQHAAEVRVGVRDESVNGGDDDVVGFDYDYELESDDLACFRGLVLDISYRPVNVVC 116
Query: 115 WKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLM 174
WKRAICLEFMEKADVLEYYDQT+NSP+GSFYIPAVLRV HLLQVVKRRRIKN+LSRKN++
Sbjct: 117 WKRAICLEFMEKADVLEYYDQTVNSPSGSFYIPAVLRVPHLLQVVKRRRIKNSLSRKNIL 176
Query: 175 YRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSR 234
YRDN+TCQYCSS E+LTIDHV+P SRGGEW WENLVAAC KCNS+KG+KT+EEANM+L +
Sbjct: 177 YRDNYTCQYCSSHESLTIDHVLPISRGGEWTWENLVAACVKCNSKKGQKTVEEANMKLKK 236
Query: 235 VPKAPK 240
+P+ K
Sbjct: 237 LPRLQK 242
>gi|115470783|ref|NP_001058990.1| Os07g0170200 [Oryza sativa Japonica Group]
gi|50509740|dbj|BAD31792.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113610526|dbj|BAF20904.1| Os07g0170200 [Oryza sativa Japonica Group]
gi|125557379|gb|EAZ02915.1| hypothetical protein OsI_25053 [Oryza sativa Indica Group]
Length = 282
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 139/197 (70%), Positives = 169/197 (85%), Gaps = 2/197 (1%)
Query: 79 ISGESEEYDSDEEFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTIN 138
+ GE +E D D+L+ FRGLVLD+SYRPVNVVCWKRAICLEFM KADVLEYYDQT++
Sbjct: 87 VDGEDDEAAIDG--DDLSGFRGLVLDLSYRPVNVVCWKRAICLEFMAKADVLEYYDQTVS 144
Query: 139 SPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPA 198
SP+GSFYIPAVLRV LLQVVKRRR+K++LSRKN++YRD FTCQYCSS +NLTIDHV+P
Sbjct: 145 SPSGSFYIPAVLRVPELLQVVKRRRVKHSLSRKNILYRDGFTCQYCSSVDNLTIDHVIPT 204
Query: 199 SRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLR 258
+RGG+W+WENLV AC +CNSRKG+KT+E+ANM+L +VPKAPK++DILA+PLT AA R L+
Sbjct: 205 ARGGKWEWENLVTACSRCNSRKGQKTVEQANMKLLKVPKAPKEFDILAVPLTKAAFRTLK 264
Query: 259 VRKGTPVEWRQYLPQHS 275
+G P EW QYL + S
Sbjct: 265 RSQGLPEEWLQYLARPS 281
>gi|125599262|gb|EAZ38838.1| hypothetical protein OsJ_23253 [Oryza sativa Japonica Group]
Length = 282
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 139/197 (70%), Positives = 169/197 (85%), Gaps = 2/197 (1%)
Query: 79 ISGESEEYDSDEEFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTIN 138
+ GE +E D D+L+ FRGLVLD+SYRPVNVVCWKRAICLEFM KADVLEYYDQT++
Sbjct: 87 VDGEDDEAAIDG--DDLSGFRGLVLDLSYRPVNVVCWKRAICLEFMAKADVLEYYDQTVS 144
Query: 139 SPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPA 198
SP+GSFYIPAVLRV LLQVVKRRR+K++LSRKN++YRD FTCQYCSS +NLTIDHV+P
Sbjct: 145 SPSGSFYIPAVLRVPELLQVVKRRRVKHSLSRKNILYRDGFTCQYCSSVDNLTIDHVIPT 204
Query: 199 SRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLR 258
+RGG+W+WENLV AC +CNSRKG+KT+E+ANM+L +VPKAPK++DILA+PLT AA R L+
Sbjct: 205 ARGGKWEWENLVTACSRCNSRKGQKTVEQANMKLLKVPKAPKEFDILAVPLTKAAFRTLK 264
Query: 259 VRKGTPVEWRQYLPQHS 275
+G P EW QYL + S
Sbjct: 265 RSQGLPEEWLQYLARPS 281
>gi|242043042|ref|XP_002459392.1| hypothetical protein SORBIDRAFT_02g003980 [Sorghum bicolor]
gi|241922769|gb|EER95913.1| hypothetical protein SORBIDRAFT_02g003980 [Sorghum bicolor]
Length = 280
Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 136/196 (69%), Positives = 167/196 (85%), Gaps = 4/196 (2%)
Query: 80 SGESEEYDSDEEFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINS 139
+G+ EE+ SDE L+ FRGLVLD+SYRPVNVVCWKRAICLEF+ KADVLEYYDQT++S
Sbjct: 88 AGDEEEFASDE----LSGFRGLVLDLSYRPVNVVCWKRAICLEFIGKADVLEYYDQTVSS 143
Query: 140 PNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPAS 199
P+GSFYIPAVLRV LLQVVKRRR+K +LSRKN++YRD+FTCQYCSS +NLTIDHV+P S
Sbjct: 144 PSGSFYIPAVLRVPQLLQVVKRRRVKQSLSRKNILYRDDFTCQYCSSGDNLTIDHVIPIS 203
Query: 200 RGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRV 259
RGG+W+WENLV AC +CNSRKG+KT E+ANM+L ++P+APK+YDI+A+PLT +A R L+
Sbjct: 204 RGGKWEWENLVTACARCNSRKGQKTPEQANMKLLKIPRAPKEYDIMAVPLTKSAFRTLKR 263
Query: 260 RKGTPVEWRQYLPQHS 275
G P W QYL + S
Sbjct: 264 NHGLPEVWLQYLSRPS 279
>gi|226532958|ref|NP_001141933.1| uncharacterized protein LOC100274082 [Zea mays]
gi|194706496|gb|ACF87332.1| unknown [Zea mays]
gi|414883692|tpg|DAA59706.1| TPA: hypothetical protein ZEAMMB73_991900 [Zea mays]
Length = 287
Score = 293 bits (750), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 135/196 (68%), Positives = 166/196 (84%), Gaps = 4/196 (2%)
Query: 80 SGESEEYDSDEEFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINS 139
+G+ EEY SDE L+ FRGLVLD+SYRPVNVVCWKRAICLEF+ KA VLEYYDQT++S
Sbjct: 95 AGDEEEYASDE----LSGFRGLVLDLSYRPVNVVCWKRAICLEFIGKAHVLEYYDQTVSS 150
Query: 140 PNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPAS 199
P+GSFYIPAVLRV LLQVVKRRR+K +LSRKN++YRD+FTCQYCS ++LTIDHV+P S
Sbjct: 151 PSGSFYIPAVLRVPQLLQVVKRRRVKQSLSRKNILYRDDFTCQYCSCGDDLTIDHVIPIS 210
Query: 200 RGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRV 259
RGG+W+WENLV AC +CNSRKG+KTLE+ANM+L ++P+APK+YDI+A+PLT +A R L+
Sbjct: 211 RGGKWEWENLVTACARCNSRKGQKTLEQANMKLRKIPRAPKEYDIMAVPLTKSAFRTLKR 270
Query: 260 RKGTPVEWRQYLPQHS 275
G P W QYL + S
Sbjct: 271 NHGLPEVWLQYLARPS 286
>gi|357111451|ref|XP_003557526.1| PREDICTED: uncharacterized protein LOC100822155 [Brachypodium
distachyon]
Length = 287
Score = 293 bits (750), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 133/181 (73%), Positives = 159/181 (87%)
Query: 95 LACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRH 154
L+ FRGLVLD+SYRPVNVVCWKRAICLEFMEKADVLEYYDQT++SP+GSFYIPAVLRV
Sbjct: 106 LSGFRGLVLDLSYRPVNVVCWKRAICLEFMEKADVLEYYDQTVSSPSGSFYIPAVLRVPQ 165
Query: 155 LLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACF 214
LLQVVKRRR+K LSRKN++YRD F+CQYCSS ++LTIDHV+P SRGG+W+WENLVAAC
Sbjct: 166 LLQVVKRRRVKQCLSRKNILYRDGFSCQYCSSEDDLTIDHVIPTSRGGKWEWENLVAACS 225
Query: 215 KCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYLPQH 274
+CNSRKG KTL +ANM+L +VPKAPK++DI+A+PLT +A R +R ++G P EW QYL
Sbjct: 226 RCNSRKGHKTLLQANMKLRKVPKAPKEFDIIAVPLTKSAFRTIRRKQGLPEEWLQYLAGS 285
Query: 275 S 275
S
Sbjct: 286 S 286
>gi|326512504|dbj|BAJ99607.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 283
Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 131/181 (72%), Positives = 157/181 (86%)
Query: 95 LACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRH 154
L+ FRGLVLD+SYRPVNVVCWKRAICLEFMEKADVLEYYDQT++SP GSFYIPAVLRV
Sbjct: 102 LSGFRGLVLDLSYRPVNVVCWKRAICLEFMEKADVLEYYDQTVSSPRGSFYIPAVLRVPQ 161
Query: 155 LLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACF 214
LLQVVKRRR+K+ LSRKN+++RD F+CQYCSS ++LTIDHV+PASRGG+W+WENLV AC
Sbjct: 162 LLQVVKRRRVKHCLSRKNILFRDGFSCQYCSSEDDLTIDHVIPASRGGKWEWENLVTACS 221
Query: 215 KCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYLPQH 274
+CNSRKG KTL +ANM+L ++PK PK++DI+A+PLT +A R +R R G P EW QYL
Sbjct: 222 RCNSRKGNKTLLQANMKLRKIPKGPKEFDIIAVPLTKSAFRTIRRRHGLPEEWLQYLAGS 281
Query: 275 S 275
S
Sbjct: 282 S 282
>gi|388521737|gb|AFK48930.1| unknown [Lotus japonicus]
Length = 270
Score = 253 bits (647), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 135/231 (58%), Positives = 164/231 (70%), Gaps = 25/231 (10%)
Query: 1 MAQITSQGGLNLLFNGD-GSSFGVEPRDPFQYKLGSGLRSIEVHKRKLIR----PRNGVW 55
MAQ T+ G L LLFNG+ GSS + PF YK RS KR+ R G+
Sbjct: 27 MAQFTTHGRLKLLFNGEVGSSILEHNKGPFHYKCS---RSALTRKRRPTRYMGSSAGGIL 83
Query: 56 ---SSMNKKKSSKFSVDASLNVSGKGISGESEEYDSD--EEFDE-----------LACFR 99
+S + K+++ + +A +G+ E E YDSD E+FD L+CFR
Sbjct: 84 RYATSSMRNKANRCNAEARFTAGNEGVHDEYE-YDSDGVEDFDYEDDVFGFDGDGLSCFR 142
Query: 100 GLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
GLVLD++YRPVNVVCWKRAICLEFMEKADVLEYY++T+NSP+GSFYIPAVLRV HLLQVV
Sbjct: 143 GLVLDLAYRPVNVVCWKRAICLEFMEKADVLEYYEKTVNSPSGSFYIPAVLRVPHLLQVV 202
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLV 210
KRR +KNNLSRKN+++RD+FTCQYCSSRENLTIDHVVPA+ GGEW WENL+
Sbjct: 203 KRRIVKNNLSRKNILFRDHFTCQYCSSRENLTIDHVVPAALGGEWTWENLI 253
>gi|168024560|ref|XP_001764804.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684098|gb|EDQ70503.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 188
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 104/188 (55%), Positives = 133/188 (70%), Gaps = 1/188 (0%)
Query: 87 DSDEEFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYI 146
D +E DEL +RGLVLD+SYRP+NVV WKRA+CLE ME+ADVLEYYDQ + + + ++YI
Sbjct: 1 DEVDEDDELQVYRGLVLDLSYRPINVVSWKRALCLEIMERADVLEYYDQAVAAVSKTYYI 60
Query: 147 PAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWK 205
PAVLRV + K +++K +L+R N+ RD F CQYCS R E++TIDHV+ ASRGG W+
Sbjct: 61 PAVLRVSSFVHAPKGKKVKLSLNRNNIFLRDKFKCQYCSKREEDMTIDHVLAASRGGGWE 120
Query: 206 WENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPV 265
WENLV AC CN +KG KTLEE M+L R P+ PK+ D L +P R+L TP
Sbjct: 121 WENLVTACSSCNVKKGDKTLEECRMKLLRQPREPKELDSLDLPPNYRTFRVLHQNDSTPA 180
Query: 266 EWRQYLPQ 273
EW YLP+
Sbjct: 181 EWLDYLPR 188
>gi|168038763|ref|XP_001771869.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676820|gb|EDQ63298.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 190
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 101/189 (53%), Positives = 132/189 (69%), Gaps = 1/189 (0%)
Query: 87 DSDEEFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYI 146
D +E DEL +RGLVLD++YRP+NVV WKRA+CL+ ME+ADVLEYYDQ + + + S+YI
Sbjct: 1 DELDEDDELQIYRGLVLDLTYRPINVVSWKRALCLDVMERADVLEYYDQAVVAVSKSYYI 60
Query: 147 PAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWK 205
PAVLRV + K +++K L+R N+ RD F CQYC+ R E+LT+DHV+ ASRGG W+
Sbjct: 61 PAVLRVSTFVHAPKGKKVKLTLNRNNIFLRDKFRCQYCNKRGEDLTVDHVLAASRGGGWE 120
Query: 206 WENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPV 265
WENLV AC CN +KG K+LEE M+L + PK PK+ D +P R+L K TP
Sbjct: 121 WENLVTACATCNVKKGDKSLEECRMKLLKQPKEPKELDSSDLPPNYRTFRVLHRNKATPA 180
Query: 266 EWRQYLPQH 274
EW YLP+
Sbjct: 181 EWVDYLPKQ 189
>gi|224145963|ref|XP_002325829.1| predicted protein [Populus trichocarpa]
gi|222862704|gb|EEF00211.1| predicted protein [Populus trichocarpa]
Length = 176
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 113/188 (60%), Positives = 130/188 (69%), Gaps = 18/188 (9%)
Query: 1 MAQITSQGGLNLLFNGDGSSFGVEPRDPFQYKLGSGLRSIEVHKRKLIRPRNGVWSSMN- 59
MAQ T QG L LLFN DG+ + D GLRS + KRK IR + +
Sbjct: 1 MAQFTVQGRLKLLFNNDGTHCKLLGNDFL-----GGLRSSQTQKRK-IRSLGANCTKLYA 54
Query: 60 ----KKKSSKFSVDASLNVSGKGISGESEEYDSDEEFDELACFRGLVLDISYRPVNVVCW 115
KKS F AS +VS E+ + D D E DELACFRGLVLDISYRPVNVVCW
Sbjct: 55 AASLSKKSKHFYTVASQSVS------EASDEDYDSERDELACFRGLVLDISYRPVNVVCW 108
Query: 116 KRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI-KNNLSRKNLM 174
KRA+CLEFMEKADVLEYYDQ +NSP+GSFYIPAVLRV HLLQVVKRRRI ++ LSRKN++
Sbjct: 109 KRAMCLEFMEKADVLEYYDQAVNSPSGSFYIPAVLRVPHLLQVVKRRRIFRSKLSRKNIL 168
Query: 175 YRDNFTCQ 182
+RDN+TCQ
Sbjct: 169 HRDNYTCQ 176
>gi|302756543|ref|XP_002961695.1| hypothetical protein SELMODRAFT_67414 [Selaginella moellendorffii]
gi|300170354|gb|EFJ36955.1| hypothetical protein SELMODRAFT_67414 [Selaginella moellendorffii]
Length = 187
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 87/185 (47%), Positives = 122/185 (65%)
Query: 87 DSDEEFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYI 146
DS ++ DEL F+GLVLD+SYRP+N+V WKRA+CLE +EKA+VL YYDQ + SP+ F+I
Sbjct: 3 DSCDQADELKKFKGLVLDLSYRPINIVGWKRALCLEILEKAEVLVYYDQLVCSPSRVFFI 62
Query: 147 PAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKW 206
PAVL++ + K + ++ +LSR N+ RD F CQYC +LTIDHV+P S+GG W
Sbjct: 63 PAVLKMVDFVYSPKPKTLRLSLSRTNVFIRDKFKCQYCDHDRDLTIDHVLPVSKGGGHSW 122
Query: 207 ENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVE 266
+NLV AC +CN +KG + LE+ M+L + PK P D +P + + + + P E
Sbjct: 123 DNLVTACKRCNGKKGSRLLEDVEMKLDKAPKEPNVMDSRELPPSYRVFKNIVLNTKVPSE 182
Query: 267 WRQYL 271
W YL
Sbjct: 183 WIDYL 187
>gi|302762681|ref|XP_002964762.1| hypothetical protein SELMODRAFT_67415 [Selaginella moellendorffii]
gi|300166995|gb|EFJ33600.1| hypothetical protein SELMODRAFT_67415 [Selaginella moellendorffii]
Length = 187
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 82/174 (47%), Positives = 115/174 (66%)
Query: 98 FRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQ 157
F+GLVLD+SYRP+N+V WKRA+CLE +EKA+VL YYDQ + SP+ F+IPAVL++ +
Sbjct: 14 FKGLVLDLSYRPINIVGWKRALCLEILEKAEVLVYYDQLVCSPSRVFFIPAVLKMVDFVY 73
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
K + ++ +LSR N+ RD F CQYC +LTIDHV+P S+GG W+NLV AC +CN
Sbjct: 74 SPKPKTLRLSLSRTNVFIRDKFKCQYCDHDRDLTIDHVLPVSKGGSHSWDNLVTACKRCN 133
Query: 218 SRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
+KG + LE+ M+L + PK P D +P + + + + P EW YL
Sbjct: 134 GKKGSRLLEDVEMKLDKAPKEPNVMDSRELPPSYRVFKNIVLNTKVPSEWIDYL 187
>gi|3738317|gb|AAC63658.1| unknown protein [Arabidopsis thaliana]
Length = 188
Score = 179 bits (455), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 102/195 (52%), Positives = 130/195 (66%), Gaps = 20/195 (10%)
Query: 1 MAQITSQGGLNLLFNGDGSSFGVEPRDPFQYKL-----GSGLRSIEVHKRKLIRPRNGVW 55
MA +++ L LL + DG SFGV+ RD F+ L GS L I + + K +
Sbjct: 1 MAHFSAR--LKLLSSNDGLSFGVDSRDQFRQSLYMAGGGSPLVPIRMSRLKFCARIFSSY 58
Query: 56 SSMNKKKSSKFSVDASLNVSGKGISGESEEYDSD--------EEFDELACFRGLVLDISY 107
S K+K + L+ + K + + + + D E D L+CFRGLVLDISY
Sbjct: 59 SFPYKRKKIR-----DLDNTEKNLDIDEDNDEWDFDGDDDGLETDDHLSCFRGLVLDISY 113
Query: 108 RPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNN 167
RPVNVVCWKRAICLE+M+KADVLEYYDQT++SP GSFYIPAVLRV HLLQVVKRRR+KN+
Sbjct: 114 RPVNVVCWKRAICLEYMDKADVLEYYDQTVSSPTGSFYIPAVLRVPHLLQVVKRRRVKNS 173
Query: 168 LSRKNLMYRDNFTCQ 182
LSRKN++ RD++TCQ
Sbjct: 174 LSRKNILLRDDYTCQ 188
>gi|307107702|gb|EFN55944.1| hypothetical protein CHLNCDRAFT_13740, partial [Chlorella
variabilis]
Length = 138
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 96/139 (69%), Gaps = 1/139 (0%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQV 158
R L+LD +YRPV V W+RAICL+ M+KADVLEYY+Q++ S +++PAVLRVR
Sbjct: 1 RALLLDSTYRPVGVANWQRAICLDLMDKADVLEYYEQSVRSVQLEYFLPAVLRVRRHRGT 60
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
+ ++ L+R N+M RD ++CQYC S LTIDHVVP S+GG W NLVA C CNS
Sbjct: 61 SRHTQVVT-LNRANVMLRDRYSCQYCGSSRELTIDHVVPQSKGGGNTWSNLVACCASCNS 119
Query: 219 RKGKKTLEEANMQLSRVPK 237
+KG K+LE+ +L + PK
Sbjct: 120 KKGDKSLEQLRWKLRQQPK 138
>gi|308798983|ref|XP_003074272.1| unnamed protein product [Ostreococcus tauri]
gi|116000443|emb|CAL50123.1| unnamed protein product [Ostreococcus tauri]
Length = 312
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 108/186 (58%), Gaps = 18/186 (9%)
Query: 94 ELAC--FRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTIN-SPNGSFYIPAVL 150
ELA R LVLD+ YR +++V W+RA+ L+ EK DV+ YYD S ++Y+PAV+
Sbjct: 113 ELATDEHRVLVLDVGYRTIDIVSWQRAVVLQMYEKVDVVAYYDGPWALSAEDAYYVPAVV 172
Query: 151 RVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLV 210
R R + V + +L R+N+ RD F CQYC + ++LT+DHV PAS+GG W WENL
Sbjct: 173 RTREYSRHVSHKTPLVSLHRRNIFIRDGFRCQYCGTGDDLTVDHVFPASKGGPWTWENLT 232
Query: 211 AACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKG----TPVE 266
AC +CN++KG K L ++ ++L PKAP + A L R G P E
Sbjct: 233 TACARCNNKKGDKLLSQSGLKLRSQPKAP-----------TVANMCLYTRHGRFVNPPEE 281
Query: 267 WRQYLP 272
W ++P
Sbjct: 282 WVPFIP 287
>gi|145340721|ref|XP_001415468.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575691|gb|ABO93760.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 167
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 69/142 (48%), Positives = 93/142 (65%), Gaps = 1/142 (0%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTIN-SPNGSFYIPAVLRVRHLLQ 157
R LVLD+ Y+ +++V W+RA+ L+ M K DV+ YYD S ++Y+PAV+R R +
Sbjct: 1 RVLVLDVGYQTIDIVPWQRAMVLQMMMKVDVISYYDGPWALSAEEAYYVPAVVRTRSYNR 60
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
+ +L RKN+ RD F CQYC ENLT+DHVVPAS+GG W WENL AC KCN
Sbjct: 61 HQSHKTPLISLHRKNIFIRDGFRCQYCGKGENLTVDHVVPASKGGPWAWENLATACAKCN 120
Query: 218 SRKGKKTLEEANMQLSRVPKAP 239
++KG KTL ++ M+L P AP
Sbjct: 121 NKKGDKTLSQSGMRLRTTPTAP 142
>gi|412994157|emb|CCO14668.1| HNH endonuclease [Bathycoccus prasinos]
Length = 343
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 67/142 (47%), Positives = 99/142 (69%), Gaps = 5/142 (3%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQV 158
R LVLD++ + N+V W++A+ L +K DVLEYY++ + S +FY+PAV++ R V
Sbjct: 118 RVLVLDVAMQTSNIVSWQKALILAMFDKVDVLEYYEEMVASAYSAFYLPAVVKTR----V 173
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
+++ LSRKN++ RD+ +C YC +R++LTIDH+VPAS+GGEW W NL AC KCN+
Sbjct: 174 YDKQKGSIALSRKNVLIRDHHSCTYCGARDDLTIDHIVPASKGGEWSWTNLTTACAKCNN 233
Query: 219 RKGKKTLEE-ANMQLSRVPKAP 239
RKG K L++ + M+L R K P
Sbjct: 234 RKGDKMLKQCSGMKLVRPAKEP 255
>gi|37523299|ref|NP_926676.1| hypothetical protein glr3730 [Gloeobacter violaceus PCC 7421]
gi|35214303|dbj|BAC91671.1| glr3730 [Gloeobacter violaceus PCC 7421]
Length = 165
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 109/171 (63%), Gaps = 14/171 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L EKA+ +E+ + + S SF +P V+R+R +QV
Sbjct: 5 LVLNASYEPLNITSWRRAVVLLLKEKAEQVEHNGRILKS---SFPLPTVIRLRQYVQVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
+ + L+R+N+++RD TCQYC S+E+LTIDHVVP S+GGE WEN+ AC +CN +K
Sbjct: 62 K---EIPLTRRNVLHRDGHTCQYCGSKEDLTIDHVVPRSKGGEDAWENVTTACVRCNIKK 118
Query: 221 GKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
G +T +EA M L+ +P+ P + L +T +R G EWR+Y+
Sbjct: 119 GNRTPKEAAMPLTTMPRRP--HSSLHFEITK------HLRGGINEEWRKYV 161
>gi|147860323|emb|CAN83570.1| hypothetical protein VITISV_041707 [Vitis vinifera]
Length = 620
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 106/274 (38%), Positives = 131/274 (47%), Gaps = 74/274 (27%)
Query: 1 MAQITSQGGLNLLFNGDGSSFGVEPRDPFQ-YKLGSGLRS-IEVHKRKL-IRPRNGVWSS 57
MAQ T+QG G GVEP+DP+ YK G G +H KL ++SS
Sbjct: 1 MAQFTAQG------QGRLKPLGVEPKDPYHCYKFGGGCWPRFRIHSPKLGFLDSTKLYSS 54
Query: 58 MNKKKSSKFSVDASLNVSGKGISGESEEYDSDEEFDELACFRGLVLDISYRPVNVVCWKR 117
KS+ F A L V GE R + +S R +
Sbjct: 55 SLNTKSNHFRAQARLXV------GE----------------RVSTMTMSMRVM------- 85
Query: 118 AICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHL--------LQVVKRRRIKNNLS 169
ADVLEYYDQT+NSP+GSFYIPAVLR++ + +K +K S
Sbjct: 86 ---------ADVLEYYDQTVNSPSGSFYIPAVLRMKSMDXKFGAIMXGSMKNHGLKGVGS 136
Query: 170 RKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEAN 229
+ F +YCSS ENLT+DHV+P +RGGEWKWENL G L+
Sbjct: 137 SVATHESELFFIRYCSSGENLTVDHVLPIARGGEWKWENL--------GNXGGWWLQ--- 185
Query: 230 MQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGT 263
APKDYDILAIPLT+ AIRMLR+RK T
Sbjct: 186 --------APKDYDILAIPLTNTAIRMLRMRKVT 211
>gi|384254094|gb|EIE27568.1| hypothetical protein COCSUDRAFT_64292 [Coccomyxa subellipsoidea
C-169]
Length = 258
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 92/144 (63%), Gaps = 6/144 (4%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQV 158
R LVLD SYRP++V+ W+RAICL+ +K DVLEYYD + S + F+IPAVLRVR +
Sbjct: 94 RALVLDSSYRPIDVINWQRAICLDLFDKVDVLEYYDTCVRSSSAQFFIPAVLRVRMYVSK 153
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
+ + + +LSR+N++ RD CQYC S LTIDHVVP S+GG+W WENL + ++
Sbjct: 154 REFKAGRLSLSRRNIVMRDMGMCQYCGSTTGLTIDHVVPLSKGGKWVWENLEPSPYQLGV 213
Query: 219 RKGKKTLEEANMQLSRVPKAPKDY 242
G + +L+ PK DY
Sbjct: 214 LLGIEA------ELTTPPKEWNDY 231
>gi|221633714|ref|YP_002522940.1| putative endonuclease [Thermomicrobium roseum DSM 5159]
gi|221155724|gb|ACM04851.1| putative endonuclease [Thermomicrobium roseum DSM 5159]
Length = 206
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 103/175 (58%), Gaps = 16/175 (9%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ +Y P++V +RA+ L KA++LE YD + S F P+V+R L +VK
Sbjct: 35 LVLNQNYEPLHVASVRRALVLWLAGKAEILETYDHEVASAQHRFPAPSVIR---LYTLVK 91
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R ++ L+R+ + RDNFTCQYC R +LTIDHV+P SRGG WEN+V+AC CN R
Sbjct: 92 RPLVRVRLTRREVFLRDNFTCQYCGVRTHDLTIDHVIPRSRGGPHTWENVVSACRACNHR 151
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVE--WRQYLP 272
KG K+L EA MQL R P P I R+LR +PV W ++LP
Sbjct: 152 KGGKSLAEARMQLLRPPFEPPPSRYYTIQ------RLLR----SPVHESWLKFLP 196
>gi|443314104|ref|ZP_21043694.1| restriction endonuclease [Leptolyngbya sp. PCC 6406]
gi|442786296|gb|ELR96046.1| restriction endonuclease [Leptolyngbya sp. PCC 6406]
Length = 165
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 106/172 (61%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L KA+ +E+ + I S F +P V+R+RH ++V
Sbjct: 5 LVLNASYEPLNITSWRRAVVLVIKGKAEQIEHNGKVIYS---GFPLPTVIRLRHYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N++ RDN TCQYC S E LT+DH+VP SRGG WEN++ AC +CN R
Sbjct: 62 K---EIPLTRRNILQRDNHTCQYCGYSGEGLTLDHMVPRSRGGGDTWENMITACVRCNVR 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T EANM L+ P+ P + L +T ++R GT EW +Y+
Sbjct: 119 KGNRTPREANMMLNNPPRRP--HSSLYFEVTR------QIRSGTHAEWSKYV 162
>gi|302839075|ref|XP_002951095.1| hypothetical protein VOLCADRAFT_91550 [Volvox carteri f.
nagariensis]
gi|300263790|gb|EFJ47989.1| hypothetical protein VOLCADRAFT_91550 [Volvox carteri f.
nagariensis]
Length = 400
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 101/188 (53%), Gaps = 20/188 (10%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYD--QTINSPNGSFYIPAVLRVRHLL 156
R LVLD +YRP+NV+ W RA ++ K +VLEYY + +G +PAVLRV
Sbjct: 192 RALVLDCAYRPINVLTWYRAFHFDYFGKGEVLEYYPPPAVCTTGSGDHPLPAVLRVPQYT 251
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQ-------------YCSSRENLTIDHVVPASRGGE 203
++ + +R+N+M RD F C YC SR +LT+DHV P S+GG+
Sbjct: 252 ADMQDLCSRVACTRRNIMVRDGFCCHPIHLQITNFHFARYCGSRRDLTLDHVHPVSKGGK 311
Query: 204 WKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGT 263
WENLV AC +CN +K +TL E +L R PK P Y+I + S + +LR
Sbjct: 312 ETWENLVTACMRCNQKKSDRTLRELGWKLKRQPKEPTPYEIGIVAGISTS-DILR----P 366
Query: 264 PVEWRQYL 271
P EW Y+
Sbjct: 367 PPEWEAYI 374
>gi|217967280|ref|YP_002352786.1| HNH endonuclease [Dictyoglomus turgidum DSM 6724]
gi|217336379|gb|ACK42172.1| HNH endonuclease [Dictyoglomus turgidum DSM 6724]
Length = 174
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/142 (50%), Positives = 93/142 (65%), Gaps = 4/142 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ +Y P++V KRAI L +KA+ +E I S + +P+V+R LL VK
Sbjct: 10 LVLNSNYEPLDVCKVKRAIILIMQKKAETIETNSGVIKSASMEIEVPSVIR---LLYYVK 66
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRE-NLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R R++ LSRK + RDN+TCQYC + LTIDHV+P GG+ WENLV AC +CN +
Sbjct: 67 RPRLELKLSRKGIFLRDNYTCQYCGKKGGELTIDHVIPKRLGGKSVWENLVTACKECNHK 126
Query: 220 KGKKTLEEANMQLSRVPKAPKD 241
KG KTLEEANM+L R PK PK+
Sbjct: 127 KGDKTLEEANMKLLREPKPPKN 148
>gi|220907251|ref|YP_002482562.1| HNH endonuclease [Cyanothece sp. PCC 7425]
gi|219863862|gb|ACL44201.1| HNH endonuclease [Cyanothece sp. PCC 7425]
Length = 165
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 106/172 (61%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L KA+ +E+ + I F +P V+R+RH + V
Sbjct: 5 LVLNASYEPLNITSWQRAVVLLIKGKAERVEHNGKCIYE---DFPLPTVIRLRHYIAVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N+++RD TCQYC ++LT+DHV+P SRGG+ WEN+V AC +CN R
Sbjct: 62 K---EIPLTRRNILHRDGHTCQYCGYGGDDLTLDHVIPRSRGGDDSWENMVTACVRCNVR 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EANM L++ P+ P Y L +T +R G EWR+Y+
Sbjct: 119 KGNRTPKEANMVLNQTPRRP--YSSLYFEVTK------HLRSGVHQEWRKYV 162
>gi|148238740|ref|YP_001224127.1| McrA/HNH family nuclease [Synechococcus sp. WH 7803]
gi|147847279|emb|CAK22830.1| McrA/HNH family nuclease [Synechococcus sp. WH 7803]
Length = 165
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 105/172 (61%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ + KA+ LE+ + + + ++P V+R+R ++V
Sbjct: 5 LVLNASYEPLNITTWRRALVMMLKGKAESLEHDPERLVRRD--LHVPTVIRLRQFVRVPF 62
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+N+ RDN TCQYC ++ENL+IDHV+P SRGG W+N+ AC +CN RK
Sbjct: 63 R---QVPLTRRNVFQRDNHTCQYCGAKENLSIDHVMPRSRGGGDSWDNVTTACMRCNVRK 119
Query: 221 GKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLR-VRKGTPVEWRQYL 271
G +T +EA M L RVP+ PL+S + +R + G EW +Y+
Sbjct: 120 GNRTPQEAAMPLRRVPRR---------PLSSLSFDAVRQIDSGRHTEWAKYV 162
>gi|269837654|ref|YP_003319882.1| HNH endonuclease [Sphaerobacter thermophilus DSM 20745]
gi|269786917|gb|ACZ39060.1| HNH endonuclease [Sphaerobacter thermophilus DSM 20745]
Length = 195
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/141 (48%), Positives = 91/141 (64%), Gaps = 4/141 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ +Y P+NV +RAI L KA+VLE YD T+ S F P+V+R+ +L ++
Sbjct: 22 LVLNHNYEPLNVCNLRRAIVLVLSGKAEVLEAYDVTVASARQRFDAPSVIRLAYL---IR 78
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R R + L R+ + RD++TCQYC +R +LTIDHVVP SRGG W NLV+AC CN R
Sbjct: 79 RPRPRVKLCRREIFIRDDYTCQYCGTRTHDLTIDHVVPRSRGGGHTWSNLVSACRVCNHR 138
Query: 220 KGKKTLEEANMQLSRVPKAPK 240
KG KTL EA + L R P P+
Sbjct: 139 KGGKTLAEARLTLRREPFEPR 159
>gi|226356966|ref|YP_002786706.1| HNH endonuclease [Deinococcus deserti VCD115]
gi|226318956|gb|ACO46952.1| putative HNH endonuclease [Deinococcus deserti VCD115]
Length = 188
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 98/166 (59%), Gaps = 3/166 (1%)
Query: 74 VSGKGISGESEEYDSDEEFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYY 133
+S K + G EE +L R LVL+ SY P++V KRAI L A++LE
Sbjct: 2 ISRKDMPG-GEETRIGRVAADLNAPRVLVLNASYEPLHVTSAKRAITLVQYGVAEILEDS 60
Query: 134 DQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTID 193
D + SP+ +P+V+R+R ++ K + N R+N++ RD F CQYC SR+ LT+D
Sbjct: 61 DDIVRSPSMYMQVPSVIRLRRYVRRPKVHPVPFN--RRNVLRRDTFACQYCGSRDELTMD 118
Query: 194 HVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
HV+P SRGG WEN+V AC CN RKG +T +EA M L P+AP
Sbjct: 119 HVMPRSRGGRHHWENVVTACRSCNQRKGSQTPDEAGMPLRTRPRAP 164
>gi|206900976|ref|YP_002250607.1| HNH endonuclease [Dictyoglomus thermophilum H-6-12]
gi|206740079|gb|ACI19137.1| HNH endonuclease domain protein [Dictyoglomus thermophilum H-6-12]
Length = 166
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 70/142 (49%), Positives = 93/142 (65%), Gaps = 4/142 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ +Y P++V KRAI L +KA+ +E + S + +P+V+R LL VK
Sbjct: 2 LVLNSNYEPLDVCKVKRAISLIMQKKAETIETNSGFVKSASMEIEVPSVIR---LLYYVK 58
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRE-NLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R R++ LSRK + RDN+TCQYC + LTIDHV+P GG+ WENLV AC +CN +
Sbjct: 59 RPRLELKLSRKGIFLRDNYTCQYCGKKGGELTIDHVIPKRLGGKSVWENLVTACKECNHK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKD 241
KG KTLEEANM+L R PK PK+
Sbjct: 119 KGDKTLEEANMKLLREPKPPKN 140
>gi|218248041|ref|YP_002373412.1| HNH endonuclease [Cyanothece sp. PCC 8801]
gi|257060635|ref|YP_003138523.1| HNH endonuclease [Cyanothece sp. PCC 8802]
gi|218168519|gb|ACK67256.1| HNH endonuclease [Cyanothece sp. PCC 8801]
gi|256590801|gb|ACV01688.1| HNH endonuclease [Cyanothece sp. PCC 8802]
Length = 165
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 103/172 (59%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L KA+ LE+ Q I S F +P+V+R+RH ++V
Sbjct: 5 LVLNASYEPLNITSWRRAVVLLLKGKAEQLEHNGQFIYS---GFPLPSVIRLRHYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N++ RD TCQYC R E LT+DH++P SRGG WENLVAAC +CN +
Sbjct: 62 K---EIPLTRRNILERDRHTCQYCHYRGEQLTLDHIIPRSRGGGDTWENLVAACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EANM L P+ P Y L L R EWR+Y+
Sbjct: 119 KGNRTPKEANMMLRCQPRRP--YSSLHFELVK------HTRGNLNHEWRKYV 162
>gi|170078182|ref|YP_001734820.1| restriction endonuclease [Synechococcus sp. PCC 7002]
gi|169885851|gb|ACA99564.1| restriction endonuclease [Synechococcus sp. PCC 7002]
Length = 166
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 104/173 (60%), Gaps = 17/173 (9%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L +KA+ LE+ + I +F +P V+R+RH ++V
Sbjct: 5 LVLNASYEPLNITSWRRAVVLLLKDKAESLEHNGRVIYQ---NFPLPTVIRLRHYIKVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R + L+RKN++ RD TCQYC R E LT+DH++P SRGG WENLV AC +CN R
Sbjct: 62 R---EIPLTRKNILERDRHTCQYCRKRGEQLTLDHIIPRSRGGVDSWENLVTACMRCNVR 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLR-VRKGTPVEWRQYL 271
KG +T +EA M+L P+ P +S +L+ R EWR+Y+
Sbjct: 119 KGNRTPKEAEMELLIQPRKPH---------SSLYFELLKYTRDDLNHEWRKYV 162
>gi|427714177|ref|YP_007062801.1| restriction endonuclease [Synechococcus sp. PCC 6312]
gi|427378306|gb|AFY62258.1| restriction endonuclease [Synechococcus sp. PCC 6312]
Length = 165
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 105/172 (61%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RAI L KA+ +E+ + I + F +P V+R+RH + +
Sbjct: 5 LVLNASYEPLNITSWQRAIVLLIKGKAEQVEHNGKLIYN---DFPLPTVIRLRHYVTMPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N+++RD CQYC S + LT+DH++P SRGG WEN+V AC +CN R
Sbjct: 62 K---EIPLTRRNILHRDGHACQYCGYSGDELTLDHIIPRSRGGGDTWENIVTACVRCNVR 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T EANM L++ P+ P + L +T +R GT EWR+Y+
Sbjct: 119 KGSRTPREANMPLNQTPRRP--FSSLYFEVTK------HLRSGTHQEWRKYV 162
>gi|427419287|ref|ZP_18909470.1| restriction endonuclease [Leptolyngbya sp. PCC 7375]
gi|425762000|gb|EKV02853.1| restriction endonuclease [Leptolyngbya sp. PCC 7375]
Length = 167
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 107/173 (61%), Gaps = 17/173 (9%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RAI L KA+ +E+ ++I + +F +P V+R+RH +++
Sbjct: 5 LVLNASYEPLNITSWRRAIVLIIKGKAETVEHNGRSIYA---NFPLPTVIRLRHYVRIPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ L+R+NL+YRDN TCQYC + + LT+DHV+P SRGG+ WEN+V+AC +CN +
Sbjct: 62 K---DIPLTRRNLLYRDNHTCQYCGYAGDGLTLDHVIPRSRGGKEVWENMVSACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKG-TPVEWRQYL 271
KG +T +EA M L P+ P +S + R +G EWR+Y+
Sbjct: 119 KGNRTPKEARMPLRITPRKPH---------SSLYFEIARHTRGDAHQEWRKYV 162
>gi|374288321|ref|YP_005035406.1| hypothetical protein BMS_1591 [Bacteriovorax marinus SJ]
gi|301166862|emb|CBW26440.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
Length = 169
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/180 (39%), Positives = 110/180 (61%), Gaps = 22/180 (12%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVL-EYYDQTINSPNGSFYIPAVLRV--RHL 155
R L+LD ++ PV ++ W++A+ L +A+V+ EY D+ I S + SF +P +LR+ RH
Sbjct: 5 RTLLLDSTFFPVRIINWQKAMILLLTGRAEVVTEYDDKKIRSTSQSFSLPKILRLYNRHN 64
Query: 156 LQVVKRRRIKNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAA 212
Q R++K +R N+ RD++TCQYC+ + + LT DHV+P S+GG+ W+N+V
Sbjct: 65 TQ----RQVK--FTRLNVYLRDDYTCQYCTKSFAFKELTFDHVIPVSKGGKTTWKNIVTC 118
Query: 213 CFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYLP 272
C KCNS+KG KTL+E+ QL + PK P +A LR+++ P EW +LP
Sbjct: 119 CKKCNSKKGAKTLKESGFQLMKPPKKPG----------WSATMCLRIKENDPSEWFMWLP 168
>gi|262198599|ref|YP_003269808.1| HNH endonuclease [Haliangium ochraceum DSM 14365]
gi|262081946|gb|ACY17915.1| HNH endonuclease [Haliangium ochraceum DSM 14365]
Length = 174
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 102/177 (57%), Gaps = 15/177 (8%)
Query: 98 FRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQ 157
R L+L+ SY P+ ++ W+RA+ L +++K +V+ YD+ + S + PAV+R L +
Sbjct: 1 MRTLLLNSSYEPLRIISWQRAVTLFYLDKVEVVRSYDKVLRSASRVLPTPAVVR---LFR 57
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSS---RENLTIDHVVPASRGGEWKWENLVAACF 214
V+R +++ SR+N+ RD + CQYC LT DHVVP SRGG W+N+V AC
Sbjct: 58 FVRRHQVRIAFSRRNVFLRDGYRCQYCGEVLPAAELTTDHVVPRSRGGPTSWDNVVTACS 117
Query: 215 KCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
CN RKG ++ +A+M+L++ P+ P +P +A IR R P W +L
Sbjct: 118 PCNRRKGGRSPAQAHMELAKRPRRPAH-----LPGLAARIR----RHDAPPSWHDFL 165
>gi|78211898|ref|YP_380677.1| HNH nuclease [Synechococcus sp. CC9605]
gi|78196357|gb|ABB34122.1| HNH nuclease [Synechococcus sp. CC9605]
Length = 174
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 105/172 (61%), Gaps = 14/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ + KA+ LE+ D G+ ++P V+R+R ++V
Sbjct: 13 LVLNASYEPLNITTWRRAVVMMLKGKAESLEH-DPCRQLRQGT-HLPTVIRLRQYVRVPF 70
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSREN-LTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R + L+R+NL RDN TCQYC SR+N L+IDHV+P SRGG WEN+ AC CN R
Sbjct: 71 R---QLPLTRRNLFQRDNHTCQYCGSRDNQLSIDHVIPRSRGGGDTWENVTTACLSCNVR 127
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EA+M LS VP+ P A L+ A R ++ G EW +Y+
Sbjct: 128 KGNRTPKEASMPLSHVPRRP------ASSLSFEARR--QIHSGHHQEWAKYV 171
>gi|22298039|ref|NP_681286.1| hypothetical protein tlr0496 [Thermosynechococcus elongatus BP-1]
gi|22294217|dbj|BAC08048.1| tlr0496 [Thermosynechococcus elongatus BP-1]
Length = 165
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 108/173 (62%), Gaps = 17/173 (9%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L KA+ +E+ + + + +F +P V+R+RH + V
Sbjct: 5 LVLNASYEPLNITSWQRAVVLLIKGKAEQVEHNGKMVYN---NFPLPTVIRLRHYV-VTP 60
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ I L+R+N+++RD +CQYC + + LT+DHV+P SRGG WEN+V AC +CN +
Sbjct: 61 YKEIP--LTRRNILHRDGHSCQYCGYTGDELTLDHVIPKSRGGGETWENIVTACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLR-VRKGTPVEWRQYL 271
KG +T +EANM L + P+ P++S + + VR GT EWR+Y+
Sbjct: 119 KGNRTPKEANMPLRQTPRR---------PISSLYFEVTKHVRTGTHQEWRKYV 162
>gi|297623805|ref|YP_003705239.1| HNH endonuclease [Truepera radiovictrix DSM 17093]
gi|297164985|gb|ADI14696.1| HNH endonuclease [Truepera radiovictrix DSM 17093]
Length = 165
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 94/141 (66%), Gaps = 3/141 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
L+L+ SY P++V KRA+ L + A+ +E D+ + SP+ F +P+V+R++ ++
Sbjct: 2 LILNASYEPLHVCSVKRAVALLMHDVAERVEDSDKVLRSPSQVFPVPSVVRLKKFVKRPP 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRE-NLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R R+ N RKN+ RD+ TCQYC SRE +LT+DHV+P SRGG WEN+VA C +CN+R
Sbjct: 62 RHRVAFN--RKNVFRRDDHTCQYCLSRESDLTLDHVLPRSRGGATNWENVVACCRRCNAR 119
Query: 220 KGKKTLEEANMQLSRVPKAPK 240
K +T EEA M L R P AP+
Sbjct: 120 KRDRTPEEAQMTLKRRPYAPR 140
>gi|269926094|ref|YP_003322717.1| HNH endonuclease [Thermobaculum terrenum ATCC BAA-798]
gi|269789754|gb|ACZ41895.1| HNH endonuclease [Thermobaculum terrenum ATCC BAA-798]
Length = 170
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 106/173 (61%), Gaps = 12/173 (6%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ +Y P+NV KRA+ + + KA+VLE I++P+ S+ P+V+R+ HL VK
Sbjct: 6 LVLNYNYEPLNVCNAKRALVMVYNGKAEVLELNGHIIHTPSSSYRCPSVIRLSHL---VK 62
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R R + L+RK + RDN+TCQYC +LT+DHV+P SRGG W NLV+AC CN R
Sbjct: 63 RPRPRLRLTRKEVFARDNYTCQYCGKHTRDLTLDHVIPRSRGGRHTWTNLVSACRACNHR 122
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYLP 272
KG K+ EEA M+L PK P+ ++ I + +++ EW +YLP
Sbjct: 123 KGGKSPEEARMRLLNEPKEPR--------VSPYYILLQKIQHSVNEEWLKYLP 167
>gi|411119826|ref|ZP_11392202.1| restriction endonuclease [Oscillatoriales cyanobacterium JSC-12]
gi|410709982|gb|EKQ67493.1| restriction endonuclease [Oscillatoriales cyanobacterium JSC-12]
Length = 165
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 105/172 (61%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L KA+ +E+ + + S F +P V+R+RH ++V
Sbjct: 5 LVLNASYEPLNITSWRRAVVLLLKGKAEQVEHNGKYVYS---GFPLPTVIRLRHYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+RKNL++RD CQYC + E+LT+DHVVP SRGG WEN+V AC +CN +
Sbjct: 62 K---EIPLTRKNLLHRDGHACQYCGYTGEDLTLDHVVPRSRGGGDSWENIVTACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EA+M L P+ P Y L +T V+ G EWR+Y+
Sbjct: 119 KGNRTPKEASMLLLNPPRKP--YSGLYFEVTK------HVKNGLNQEWRKYV 162
>gi|87124993|ref|ZP_01080840.1| HNH nuclease [Synechococcus sp. RS9917]
gi|86167313|gb|EAQ68573.1| HNH nuclease [Synechococcus sp. RS9917]
Length = 166
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 101/177 (57%), Gaps = 24/177 (13%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPN----GSFYIPAVLRVRHLL 156
LVL+ SY P+N+ W+RA+ + KA+ LE+ PN +P V+R+R +
Sbjct: 5 LVLNASYEPLNITTWRRAMVMMLKGKAEGLEH------DPNHCVRADLLVPTVIRLRQFV 58
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFK 215
+V R + L+R+NL RDN CQYC SR + L+IDHV+P SRGG WEN+ AC +
Sbjct: 59 RVPFR---QLPLTRRNLFQRDNHCCQYCGSRGDQLSIDHVIPRSRGGSDTWENVTTACLR 115
Query: 216 CNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLR-VRKGTPVEWRQYL 271
CN RKG +T +EANM L RVP+ PL+S + R + G EW +Y+
Sbjct: 116 CNVRKGNRTPQEANMPLRRVPRR---------PLSSLSFEATRQIHSGRRSEWAKYV 163
>gi|284107221|ref|ZP_06386362.1| HNH endonuclease family protein [Candidatus Poribacteria sp.
WGA-A3]
gi|283829968|gb|EFC34247.1| HNH endonuclease family protein [Candidatus Poribacteria sp.
WGA-A3]
Length = 176
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 110/182 (60%), Gaps = 23/182 (12%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
L+L+ +Y P+ VV W++A+ L K +VLE+Y++ I + +F +P+V+R LL+VVK
Sbjct: 3 LLLNATYEPLRVVQWQKAVTLLCQGKVEVLEFYERDIRGVSITFKLPSVMR---LLKVVK 59
Query: 161 RRRIKNN-----LSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAA 212
+K+N SR N+ RD ++CQYC R E LT DHVVP ++GG WEN+V A
Sbjct: 60 ---LKSNHRAVKFSRINIFTRDKYSCQYCCKRFRTEELTFDHVVPIAKGGTKTWENIVTA 116
Query: 213 CFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYLP 272
C++CN++K +T +EA+M+L + P+ P+ L I M+ +R P WR YL
Sbjct: 117 CWRCNNKKSGRTPDEAHMRLKKKPQKPRWNPTLTI--------MIGIRNA-PESWRDYLY 167
Query: 273 QH 274
H
Sbjct: 168 WH 169
>gi|307150204|ref|YP_003885588.1| HNH endonuclease [Cyanothece sp. PCC 7822]
gi|306980432|gb|ADN12313.1| HNH endonuclease [Cyanothece sp. PCC 7822]
Length = 168
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 102/172 (59%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ WKRA+ L KA+ LE+ + + S +P V+R+RH ++V
Sbjct: 5 LVLNASYEPLNITSWKRAVVLLLKGKAEQLEHNGRLLYS---GLPLPTVIRLRHYVKVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N++ RD TCQYCS + E LT+DHV+P SRGG WENLV AC +CN +
Sbjct: 62 K---EIPLTRRNILERDRHTCQYCSYKGEQLTLDHVIPRSRGGGETWENLVTACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EANM L P+ P Y L L R + EWR+Y+
Sbjct: 119 KGNRTPKEANMTLLSQPRKP--YSSLYFELIK------HTRGESNQEWRKYV 162
>gi|218437855|ref|YP_002376184.1| HNH endonuclease [Cyanothece sp. PCC 7424]
gi|218170583|gb|ACK69316.1| HNH endonuclease [Cyanothece sp. PCC 7424]
Length = 168
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 102/172 (59%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ WKRAI L KA+ LE+ + + S +P V+R+RH ++V
Sbjct: 5 LVLNASYEPLNITSWKRAIVLLLKGKAEQLEHNGRLLYS---GIPLPTVIRLRHYVKVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N++ RD TCQYCS + E LT+DHV+P SRGG WENLV AC +CN +
Sbjct: 62 K---EIPLTRRNILERDRHTCQYCSYKGEQLTLDHVIPRSRGGGDTWENLVTACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EANM L P+ P Y L L R + EWR+Y+
Sbjct: 119 KGNRTPKEANMMLLTQPRKP--YSSLYFELIK------HTRGESNQEWRKYV 162
>gi|451981979|ref|ZP_21930315.1| putative HNH endonuclease [Nitrospina gracilis 3/211]
gi|451760820|emb|CCQ91591.1| putative HNH endonuclease [Nitrospina gracilis 3/211]
Length = 180
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 108/186 (58%), Gaps = 21/186 (11%)
Query: 95 LACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRH 154
L + LVL+ +Y P+ C KR + + +A+ +E I SP+ S +P V+RV
Sbjct: 2 LDSLKILVLNYTYEPLQFCCAKRGLLMVLSGRAEEIESDGYVIRSPSLSLPLPTVIRV-- 59
Query: 155 LLQVVKR-RRIKNNLSRKNLMYRDNFTCQYCSSRENL-TIDHVVPASRGGEWKWENLVAA 212
L+VVKR RR + S+KN++ RDN+TCQYC RE+L T+DH++P SRGG+ W N+V A
Sbjct: 60 -LKVVKRNRRKQVAFSKKNILRRDNYTCQYCGEREHLLTVDHILPKSRGGKTSWTNVVVA 118
Query: 213 CFKCNSRKGKKTLEEANMQLSRVPKAPK-DYDILAIPLTSAAIRMLRVRKGTPVE---WR 268
C CN +KG +T EANM+L + P P+ + IP +G P W+
Sbjct: 119 CKPCNLKKGNRTASEANMKLIKKPIRPEFSFHSFIIP------------EGPPSHIESWK 166
Query: 269 QYLPQH 274
+YLP++
Sbjct: 167 KYLPKN 172
>gi|254430436|ref|ZP_05044139.1| HNH endonuclease family protein [Cyanobium sp. PCC 7001]
gi|197624889|gb|EDY37448.1| HNH endonuclease family protein [Cyanobium sp. PCC 7001]
Length = 182
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 96/172 (55%), Gaps = 14/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ WKRA+ + KA+ LE+ P+ +P V+R+RH ++V
Sbjct: 12 LVLNASYEPLNITTWKRALVMLLKGKAEGLEHDRNRAIRPD--LLLPTVIRLRHFVRVPY 69
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R + L+R+NL +RD CQYC S E L++DHVVP SRGG WEN+ AC CN R
Sbjct: 70 R---QLPLTRRNLFHRDGHCCQYCGYSGEKLSVDHVVPRSRGGTDSWENVTTACLSCNVR 126
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T EA M L R P P A L A R LR G EW +YL
Sbjct: 127 KGNRTPREAGMVLLRAPHRP------ASGLGYEATRHLRA--GRHHEWAKYL 170
>gi|88807915|ref|ZP_01123426.1| HNH nuclease [Synechococcus sp. WH 7805]
gi|88787954|gb|EAR19110.1| HNH nuclease [Synechococcus sp. WH 7805]
Length = 165
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 103/172 (59%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ + KA+ LE+ + + ++P V+R+R ++V
Sbjct: 5 LVLNASYEPLNITTWRRALVMMLKGKAESLEHDPHRLVRRD--VHVPTVIRLRQFVRVPF 62
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+N+ RDN TCQYC +ENL+IDHV+P SRGG W+N+ AC +CN RK
Sbjct: 63 R---QVPLTRRNVFQRDNHTCQYCGVKENLSIDHVMPRSRGGGDSWDNVTTACMRCNVRK 119
Query: 221 GKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLR-VRKGTPVEWRQYL 271
G +T +EA M L ++P+ PL+S + +R + G EW +Y+
Sbjct: 120 GNRTPQEAAMPLRKMPRR---------PLSSLSFDAVRQINSGRHSEWAKYV 162
>gi|119485492|ref|ZP_01619820.1| hypothetical protein L8106_10131 [Lyngbya sp. PCC 8106]
gi|119457248|gb|EAW38374.1| hypothetical protein L8106_10131 [Lyngbya sp. PCC 8106]
Length = 165
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 104/172 (60%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L +KA+ +E+ + + F +P V+R+RH ++V
Sbjct: 5 LVLNASYEPLNITSWRRAVVLLLKQKAEQVEHNGKYLLP---DFPLPTVIRLRHYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSS-RENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ L+R+N+++RD TCQYCS + LT+DHV+P SRGG WENLVAAC +CN +
Sbjct: 62 K---DIPLTRRNILHRDGHTCQYCSYIGDELTLDHVIPRSRGGGETWENLVAACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T EANM L P+ P Y L +T ++ G EW++Y+
Sbjct: 119 KGSRTPREANMILRHPPRKP--YSSLYFEVTK------HLKSGMNQEWQKYI 162
>gi|33866629|ref|NP_898188.1| HNH endonuclease [Synechococcus sp. WH 8102]
gi|33633407|emb|CAE08612.1| HNH endonuclease family protein [Synechococcus sp. WH 8102]
Length = 166
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 103/173 (59%), Gaps = 16/173 (9%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ + KA+ LE D T G+ ++P V+R+R ++V
Sbjct: 5 LVLNASYEPLNITTWRRAMVMMLKGKAESLEQ-DSTREIRRGT-HLPTVIRLRQYVRVPF 62
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R + L+R+NL +RDN +CQYC R E L+IDHVVP SRGG WEN+ AC CN R
Sbjct: 63 R---QLPLTRRNLFHRDNHSCQYCGCRNEPLSIDHVVPRSRGGGDTWENVTTACLSCNVR 119
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLR-VRKGTPVEWRQYL 271
KG +T +EA+M L RVP+ PL+S + R + G EW +Y+
Sbjct: 120 KGNRTPKEADMPLMRVPRR---------PLSSLSFEATRQIHSGRHSEWAKYV 163
>gi|94986243|ref|YP_605607.1| HNH endonuclease [Deinococcus geothermalis DSM 11300]
gi|94556524|gb|ABF46438.1| HNH endonuclease [Deinococcus geothermalis DSM 11300]
Length = 189
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 94/157 (59%), Gaps = 4/157 (2%)
Query: 84 EEYDSDEEFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGS 143
EE +L R LVL+ SY P++V KRAI L A+VLE + + SP+
Sbjct: 13 EEARGMRVAPDLNAPRVLVLNASYEPLHVTSAKRAITLLQYGVAEVLEVSEDVVRSPSTV 72
Query: 144 FYIPAVLRVRHLLQVVKRRRIKN-NLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGG 202
+P+V+R++ + V+R R+ +R+N++ RD F CQYC + +LT+DHV+P SRGG
Sbjct: 73 LLVPSVIRLK---RYVRRPRVHPVPFNRRNVLRRDTFACQYCGAETDLTLDHVLPRSRGG 129
Query: 203 EWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
WEN+V AC CN RKG +T +EA M L P+AP
Sbjct: 130 RHSWENVVTACRTCNQRKGNRTPDEAGMPLRSRPRAP 166
>gi|428214836|ref|YP_007087980.1| restriction endonuclease [Oscillatoria acuminata PCC 6304]
gi|428003217|gb|AFY84060.1| restriction endonuclease [Oscillatoria acuminata PCC 6304]
Length = 165
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 107/172 (62%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RAI L KA+ +E+ + I S +P V+R+RH +++
Sbjct: 5 LVLNASYEPLNITSWRRAIVLLLKGKAEQVEHNGKFIYS---DVPLPTVIRLRHYVRIPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ L+R+N+++RD+ +CQYC S + LT+DHV+P SRGG WENLV+AC +CN +
Sbjct: 62 H---EIPLTRRNILHRDSHSCQYCGYSGDELTLDHVIPRSRGGPDSWENLVSACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T EE+ M L+R+P+ P Y L ++ ++ G EW++Y+
Sbjct: 119 KGNRTPEESKMPLTRIPRRP--YSSLYFEVSK------HLKSGLHQEWQKYV 162
>gi|158335588|ref|YP_001516760.1| HNH endonuclease family protein [Acaryochloris marina MBIC11017]
gi|359457816|ref|ZP_09246379.1| HNH endonuclease family protein [Acaryochloris sp. CCMEE 5410]
gi|158305829|gb|ABW27446.1| HNH endonuclease family protein [Acaryochloris marina MBIC11017]
Length = 165
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 106/172 (61%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L EKA+ +E+ + + F +P V+R+R ++V
Sbjct: 5 LVLNASYEPLNITSWRRAVVLVLKEKAEQVEHNGKFVYR---DFPLPTVIRLRQYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+NL++RD+ TCQYC + ++LT+DHV+P SRGG WEN+V AC +CN +
Sbjct: 62 K---EIPLTRRNLLHRDSHTCQYCGHAGDDLTLDHVMPRSRGGGDTWENMVTACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EA M L + P+ P Y L +T +R G EWR+Y+
Sbjct: 119 KGNRTPKEARMILKQTPRRP--YSSLYFEVTK------HLRNGVHQEWRKYV 162
>gi|158341248|ref|YP_001522388.1| HNH endonuclease family protein [Acaryochloris marina MBIC11017]
gi|158311489|gb|ABW33100.1| HNH endonuclease family protein [Acaryochloris marina MBIC11017]
Length = 165
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 104/172 (60%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L EKA+ +E+ + + F +P V+R LLQ V+
Sbjct: 5 LVLNASYEPLNITSWRRAVVLVLKEKAEQVEHNGKFVYR---DFPLPTVIR---LLQYVR 58
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ L+R+NL++RDN TCQYC + +LT+DHV+P SRGG WEN+V AC +CN +
Sbjct: 59 VPYKEITLNRRNLLHRDNHTCQYCGYTGSDLTLDHVMPRSRGGGDTWENMVTACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EA M L++ P+ P + L +T R G EWR+Y+
Sbjct: 119 KGNRTPKEARMILNKTPRRP--HSSLYFEVTK------HFRNGVHQEWRKYV 162
>gi|260434766|ref|ZP_05788736.1| HNH nuclease [Synechococcus sp. WH 8109]
gi|260412640|gb|EEX05936.1| HNH nuclease [Synechococcus sp. WH 8109]
Length = 166
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 103/172 (59%), Gaps = 14/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ + KA+ LE+ D G+ ++P V+R+R ++V
Sbjct: 5 LVLNASYEPLNITTWRRAVVMMLKGKAESLEH-DPYRQLRQGT-HLPTVIRLRQYVRVPF 62
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSREN-LTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R + L+R+NL RDN TCQYC SR+N L+IDHV+P SRGG WEN+ AC CN R
Sbjct: 63 R---QLPLTRRNLFQRDNHTCQYCGSRDNQLSIDHVMPRSRGGSDTWENVTTACLSCNVR 119
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EA M L VP+ P A L+ A R ++ G EW +Y+
Sbjct: 120 KGNRTPKEAAMPLRHVPRRP------ASSLSFEARR--QIHSGHHQEWAKYV 163
>gi|302038075|ref|YP_003798397.1| putative HNH endonuclease [Candidatus Nitrospira defluvii]
gi|300606139|emb|CBK42472.1| putative HNH endonuclease [Candidatus Nitrospira defluvii]
Length = 181
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 103/174 (59%), Gaps = 13/174 (7%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
L+L+ +Y P+ V+ W++AI L + K +VLE YD+ I+ + S +P+V+R+ L+++
Sbjct: 5 LLLNSTYEPLRVLHWQKAITLLWQGKVEVLEVYDRQIHGISISIKLPSVMRLLKLVKLKD 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCN 217
R SR N+ RD + CQYC + E LT DHVVP ++GG WEN+V AC++CN
Sbjct: 65 SHR-AVKFSRINIFTRDGYCCQYCKHKFRTEELTFDHVVPIAKGGRKTWENIVTACWRCN 123
Query: 218 SRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
+RK +T EEANM+L + P P+ + I + IR TP WR YL
Sbjct: 124 NRKSGRTPEEANMRLIKKPVKPRWSPTVTI---TIGIR------NTPESWRDYL 168
>gi|406982053|gb|EKE03422.1| HNH endonuclease [uncultured bacterium]
Length = 163
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 96/143 (67%), Gaps = 7/143 (4%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
L+L+ SY P+N+ W+RA+ L KA+ +E Y+ IN + ++P+V+R+R+ + VV
Sbjct: 5 LLLNASYEPLNICSWRRALILLLKGKAEKVEAYESLINE---TIHVPSVIRLRYYV-VVP 60
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSS-RENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + N RKN+++RDN TCQYC +LTIDH++P S+GG+ WEN+VAAC +CNS
Sbjct: 61 YKELPFN--RKNILHRDNHTCQYCGKISSSLTIDHIIPRSKGGKSTWENVVAACARCNSL 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDY 242
K K LE+ ++L + P PK+Y
Sbjct: 119 KADKLLEDTGLKLRKKPAKPKNY 141
>gi|325283474|ref|YP_004256015.1| HNH endonuclease [Deinococcus proteolyticus MRP]
gi|324315283|gb|ADY26398.1| HNH endonuclease [Deinococcus proteolyticus MRP]
Length = 184
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 91/158 (57%), Gaps = 2/158 (1%)
Query: 82 ESEEYDSDEEFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPN 141
E E + +L R LVL+ SY P+ V KRAI L A+VLE + SP+
Sbjct: 7 EGEPRPAGRPAPDLNAARVLVLNASYEPLQVTSIKRAITLTQYGVAEVLEESRDVVRSPS 66
Query: 142 GSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRG 201
+P+V+R+R ++ + N R+N++ RD+F CQYC S ENLT+DHV+P SRG
Sbjct: 67 TVLQVPSVIRLRRYVRRPNTFAVPFN--RRNVLRRDSFECQYCGSSENLTLDHVLPRSRG 124
Query: 202 GEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
G +W N+ AC +CN KG +T EEA M L + P+ P
Sbjct: 125 GRHEWTNVTTACRECNQSKGSRTPEEAQMPLRQGPRVP 162
>gi|113953473|ref|YP_729637.1| HNH endonuclease family protein [Synechococcus sp. CC9311]
gi|352096491|ref|ZP_08957318.1| HNH endonuclease [Synechococcus sp. WH 8016]
gi|113880824|gb|ABI45782.1| HNH endonuclease family protein [Synechococcus sp. CC9311]
gi|351676141|gb|EHA59295.1| HNH endonuclease [Synechococcus sp. WH 8016]
Length = 166
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 105/172 (61%), Gaps = 14/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ + KA+ LE+ DQ+ G+ ++P V+R+ ++V
Sbjct: 5 LVLNASYEPLNITTWRRAMVMLMKGKAEGLEH-DQSKLIRQGT-HLPTVIRLVQFVRVPF 62
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R + L+R+N+ RDN CQYC SR E L+IDHV+P SRGG W+N+ AC CN R
Sbjct: 63 R---QLPLTRRNVFQRDNHCCQYCGSRTEQLSIDHVMPRSRGGGDSWDNITTACLSCNVR 119
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T EEA M L+RVP+ P L+ A+R ++ G +EW +Y+
Sbjct: 120 KGSRTPEEAGMPLNRVPRRPHS------SLSFEAVR--QIDSGRYLEWAKYV 163
>gi|86608883|ref|YP_477645.1| HNH endonuclease domain-containing protein [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86557425|gb|ABD02382.1| HNH endonuclease domain protein [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 178
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 102/171 (59%), Gaps = 15/171 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L KA+ +E+ + + G+ +P V+R+RH + V
Sbjct: 5 LVLNASYEPLNITSWRRAVVLLLKGKAEQIEHNGRVVY---GNIPLPTVIRLRHYVHVPH 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSS-RENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N++YRD CQYC E+LT+DHV+P SRGG WEN+V+AC +CN +
Sbjct: 62 K---EIPLTRRNVLYRDGHRCQYCGCFGEDLTLDHVIPRSRGGGDTWENVVSACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQY 270
KG +T EA M L R P+ P + L ++ A V G+ EW +Y
Sbjct: 119 KGNRTPREAGMPLLRQPRRP--HSTLYFEISKA------VGSGSHREWSKY 161
>gi|434387519|ref|YP_007098130.1| restriction endonuclease [Chamaesiphon minutus PCC 6605]
gi|428018509|gb|AFY94603.1| restriction endonuclease [Chamaesiphon minutus PCC 6605]
Length = 165
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 102/172 (59%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L KA+ +E+ + + F +P V+R+RH + V
Sbjct: 5 LVLNASYEPLNITGWRRAVILMLKGKAEQVEHNGKYLAK---DFPLPTVIRLRHYVTVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R + L+R+N++ RDN +CQYC + + LT+DHV+P SRGG WENL+ AC +CN +
Sbjct: 62 R---EIPLTRRNVLNRDNHSCQYCGHKGDGLTLDHVIPRSRGGPDTWENLITACMRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EAN+ L P+ P Y L + + G+ EWR+Y+
Sbjct: 119 KGNRTPKEANLPLYTQPRRP--YSSLHYEAVT------HINNGSHAEWRKYI 162
>gi|332295003|ref|YP_004436926.1| HNH endonuclease [Thermodesulfobium narugense DSM 14796]
gi|332178106|gb|AEE13795.1| HNH endonuclease [Thermodesulfobium narugense DSM 14796]
Length = 165
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 107/182 (58%), Gaps = 25/182 (13%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFY-----IPAVLRVRHL 155
LVL+ S+ P+ V W++ + L + +KA+V+EY NG F +P V+R+
Sbjct: 2 LVLNSSFYPLGVSSWRKGVLLVWKKKAEVIEY--------NGHFLRDDLRLPCVIRLDRN 53
Query: 156 LQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRE-NLTIDHVVPASRGGEWKWENLVAACF 214
+ + + L+RKN++ RD TCQYC + NLT+DH++P SRGGE WEN+VAAC
Sbjct: 54 IFLPHK---DVALTRKNIIARDQNTCQYCGKKSSNLTVDHIIPKSRGGELSWENVVAACQ 110
Query: 215 KCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYLPQH 274
CN +KG +T EEANM+L R+P+ PK + S + ++R K EW +Y+P+
Sbjct: 111 ACNLKKGNRTPEEANMKLLRLPRKPK--------IPSNLLDIVRFAKSQYHEWIKYIPKK 162
Query: 275 SL 276
L
Sbjct: 163 YL 164
>gi|86605206|ref|YP_473969.1| HNH endonuclease domain-containing protein [Synechococcus sp.
JA-3-3Ab]
gi|86553748|gb|ABC98706.1| HNH endonuclease domain protein [Synechococcus sp. JA-3-3Ab]
Length = 178
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 103/171 (60%), Gaps = 15/171 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L KA+ +E+ + + G+ +P V+R+RH + V
Sbjct: 5 LVLNASYDPLNITSWRRAVVLLLKGKAEQIEHNGKVVY---GNIPLPTVIRLRHYVHVPH 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N++YRD CQYC E+LT+DHV+P SRGGE WEN+V+AC +CN +
Sbjct: 62 K---EIPLTRRNVLYRDGHRCQYCGCYGEDLTLDHVIPRSRGGEDTWENVVSACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQY 270
KG +T EA M L R P+ P + L ++ A V G+ EW +Y
Sbjct: 119 KGNRTPWEAGMPLLRQPRRP--HSTLYFEISKA------VGSGSHREWLKY 161
>gi|428207267|ref|YP_007091620.1| HNH endonuclease [Chroococcidiopsis thermalis PCC 7203]
gi|428009188|gb|AFY87751.1| HNH endonuclease [Chroococcidiopsis thermalis PCC 7203]
Length = 165
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 105/172 (61%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RAI L KA+ +E+ + I + F +P V+R+RH ++V
Sbjct: 5 LVLNASYEPINITSWRRAIVLLIKGKAEQVEHNGKVIYA---EFPLPTVIRLRHYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSS-RENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N+++RD+ +CQYC E+LT+DHV+P SRGG WEN+V AC +CN +
Sbjct: 62 K---EIPLTRRNILHRDSHSCQYCGYIGEDLTLDHVLPRSRGGMDTWENIVTACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T EA+M L P+ P Y L +T ++ G EW++Y+
Sbjct: 119 KGSRTPSEAHMHLRHPPRKP--YSSLYFEVTK------HLKSGLHDEWQKYV 162
>gi|172035324|ref|YP_001801825.1| hypothetical protein cce_0408 [Cyanothece sp. ATCC 51142]
gi|354555419|ref|ZP_08974720.1| HNH endonuclease [Cyanothece sp. ATCC 51472]
gi|171696778|gb|ACB49759.1| hypothetical protein cce_0408 [Cyanothece sp. ATCC 51142]
gi|353552478|gb|EHC21873.1| HNH endonuclease [Cyanothece sp. ATCC 51472]
Length = 165
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 102/172 (59%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L KA+ LE ++ I + F +P+V+R+RH ++V
Sbjct: 5 LVLNASYEPLNITSWRRAVVLLIKGKAEQLENNERFIYT---DFPLPSVIRLRHYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N++ RD TCQYC + E LT+DHV+P SRGG WENLV AC +CN +
Sbjct: 62 K---EIPLTRRNILERDRHTCQYCRYKGEQLTLDHVIPRSRGGGETWENLVTACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EA+M L P+ P Y L L R EWR+Y+
Sbjct: 119 KGNRTPKEAHMNLRHPPRRP--YSSLQFELVKHT------RGNLNQEWRKYI 162
>gi|148655850|ref|YP_001276055.1| HNH endonuclease [Roseiflexus sp. RS-1]
gi|148567960|gb|ABQ90105.1| HNH endonuclease [Roseiflexus sp. RS-1]
Length = 197
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 92/145 (63%), Gaps = 5/145 (3%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQV 158
R LVL+ SY P+ + +RAI L +KA+++E Q + + S +P V+R+ +++
Sbjct: 33 RVLVLNASYEPLQFISVRRAIVLLLQDKAELVEAAQQRLRARGISLEVPLVIRLVRYIRI 92
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSS---RENLTIDHVVPASRGGEWKWENLVAACFK 215
+R R+ SR++++ RD TCQYC + R +LT+DHVVP SRGGE WEN+V AC
Sbjct: 93 PRRMRLP--CSRRSILLRDRETCQYCGAQPGRAHLTVDHVVPRSRGGETTWENVVTACRD 150
Query: 216 CNSRKGKKTLEEANMQLSRVPKAPK 240
CN RKG +T EEA M L +P+ P+
Sbjct: 151 CNHRKGGRTPEEAGMTLLTIPRQPQ 175
>gi|428770665|ref|YP_007162455.1| HNH endonuclease [Cyanobacterium aponinum PCC 10605]
gi|428684944|gb|AFZ54411.1| HNH endonuclease [Cyanobacterium aponinum PCC 10605]
Length = 165
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 102/172 (59%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ WKRA+ L KA+ LE+Y+ I +F P+V+R+RH ++V
Sbjct: 5 LVLNASYEPLNITNWKRAVILLLKGKAEQLEHYENFIYP---TFPFPSVIRLRHYVKVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ L+R+N++ RD +CQYC R + LT+DH++P SRGG WENLV AC +CN +
Sbjct: 62 K---DIPLTRRNILERDRHSCQYCGYRGDQLTLDHILPRSRGGADSWENLVTACVRCNIK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EA+M L + P+ P Y L + + EWR+Y+
Sbjct: 119 KGNRTPKEAHMPLHKSPRKP--YSSLHFEIVKCT------KDNLNHEWRKYV 162
>gi|156741972|ref|YP_001432101.1| HNH endonuclease [Roseiflexus castenholzii DSM 13941]
gi|156233300|gb|ABU58083.1| HNH endonuclease [Roseiflexus castenholzii DSM 13941]
Length = 168
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 93/145 (64%), Gaps = 5/145 (3%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQV 158
R LVL+ SY P+ + +RAI L +KA+++E +Q + + S +P V+R+ +++
Sbjct: 4 RVLVLNASYEPLQFISVRRAIVLLLQDKAELVEAAEQRLRARGISLEVPLVIRLVRYIRI 63
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSS---RENLTIDHVVPASRGGEWKWENLVAACFK 215
+R R+ SR++++ RD TCQYC + R +LT+DHVVP SRGGE WEN+V AC
Sbjct: 64 PRRMRLP--CSRRSILMRDRETCQYCGAQPGRAHLTVDHVVPRSRGGETTWENVVTACRD 121
Query: 216 CNSRKGKKTLEEANMQLSRVPKAPK 240
CN RKG +T EEA M L +P+ P+
Sbjct: 122 CNHRKGGRTPEEAGMTLLTIPRQPQ 146
>gi|159900733|ref|YP_001546980.1| HNH endonuclease [Herpetosiphon aurantiacus DSM 785]
gi|159893772|gb|ABX06852.1| HNH endonuclease [Herpetosiphon aurantiacus DSM 785]
Length = 177
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 105/175 (60%), Gaps = 16/175 (9%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ +Y P+N+ +RA+ L KA+VLE+ +++ N + P+V+R+ H++
Sbjct: 6 LVLNHNYEPLNICSARRALMLVLGGKAEVLEHNHAVLHTTNDTIACPSVIRLGHMI---- 61
Query: 161 RRRIKN-NLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
RR + N LSR+ + RD++TCQYC+ S +LT+DHV+P RGG WENLV+AC CN
Sbjct: 62 RRPLPNVKLSRREIFRRDHYTCQYCNRSSADLTLDHVLPRHRGGAHSWENLVSACRTCNH 121
Query: 219 RKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPV-EWRQYLP 272
RKG +T EEA M+L R P P A P RM G + EWR++LP
Sbjct: 122 RKGGRTPEEARMRLIRPPFRP-----FASPYYLIERRM----HGLGLEEWRKFLP 167
>gi|300867436|ref|ZP_07112090.1| HNH endonuclease [Oscillatoria sp. PCC 6506]
gi|300334551|emb|CBN57258.1| HNH endonuclease [Oscillatoria sp. PCC 6506]
Length = 165
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 106/172 (61%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L KA+ +E+ + I+ F +P V+R+RH ++V
Sbjct: 5 LVLNASYEPLNITSWRRAVVLLLKGKAEQIEHNGKYISP---GFPLPTVIRLRHYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ L+R+N+++RD +CQYC + ++LT+DHVVP SRGG WENLV+AC +CN +
Sbjct: 62 K---DIPLTRRNILHRDGHSCQYCGYTGDDLTLDHVVPRSRGGVDSWENLVSACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EA+M L P+ P Y L +T V+ G EW++Y+
Sbjct: 119 KGCRTPKEASMSLRYPPRKP--YSGLYFEVTK------HVKSGMHQEWQKYV 162
>gi|166368918|ref|YP_001661191.1| HNH nuclease [Microcystis aeruginosa NIES-843]
gi|166091291|dbj|BAG05999.1| HNH nuclease [Microcystis aeruginosa NIES-843]
Length = 165
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 102/172 (59%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RAI L KA+ LE+ + + +P+V+R+R ++V
Sbjct: 5 LVLNASYEPLNITSWRRAIVLLLKGKAESLEHNGKVVCR---DLPLPSVIRLRQYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N++ RD+ TCQYC R E LTIDHV+P SRGG WENLVAAC +CN
Sbjct: 62 K---EIPLTRRNILERDHHTCQYCLYRGEQLTIDHVIPRSRGGGDTWENLVAACVRCNVH 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EANM L P+ P Y L L + R+ EWR+Y+
Sbjct: 119 KGNRTPKEANMSLHAQPRRP--YSSLHFEL------LKHTRENHNHEWRKYV 162
>gi|291297187|ref|YP_003508585.1| HNH endonuclease [Meiothermus ruber DSM 1279]
gi|290472146|gb|ADD29565.1| HNH endonuclease [Meiothermus ruber DSM 1279]
Length = 173
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 100/175 (57%), Gaps = 15/175 (8%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQV 158
R LVL+ Y P+ + KRA+ L A+V+E + + +P+ + IP+++R++ L
Sbjct: 7 RILVLNAGYEPLGLASVKRAVILVMNGTAEVVEESGEYLRTPSTPYPIPSIIRLKRL--- 63
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRE-NLTIDHVVPASRGGEWKWENLVAACFKCN 217
V+R + L+R+N++ RD +TCQYC R +LT+DHV P SRGG WENLV AC CN
Sbjct: 64 VRRPPGRLALNRRNILRRDGYTCQYCGKRGGDLTVDHVFPKSRGGRSIWENLVTACRPCN 123
Query: 218 SRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYLP 272
+K +T EEA M+L+R P AP+ +L L P WR YLP
Sbjct: 124 LKKKNRTPEEAGMRLARRPIAPRHSLLLVADLPH-----------LPETWRTYLP 167
>gi|260427395|ref|ZP_05781374.1| HNH endonuclease family protein [Citreicella sp. SE45]
gi|260421887|gb|EEX15138.1| HNH endonuclease family protein [Citreicella sp. SE45]
Length = 194
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 100/162 (61%), Gaps = 9/162 (5%)
Query: 91 EFDELACFRGLVLD-----ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFY 145
E L + LVL+ +SY P+++ W+ A+ F+++ D++ YD+ + SP+ +
Sbjct: 12 EPSSLKHYPALVLNADYRPLSYYPLSLWPWQEAVKAAFLDRVDIIAEYDEEVRSPSMTLK 71
Query: 146 IPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWK 205
IP+V+ ++ ++ R+R+ +R NL RD F CQYC S+++LT DHVVP + GG
Sbjct: 72 IPSVVVLKDYVK--PRKRVA--FTRFNLFLRDEFRCQYCGSKDDLTFDHVVPRASGGITS 127
Query: 206 WENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAI 247
WEN+VAAC CN RKG K+L + NM L ++P+ P +++ +
Sbjct: 128 WENVVAACAPCNLRKGSKSLRQVNMSLRKIPRQPGASELMDV 169
>gi|428203947|ref|YP_007082536.1| restriction endonuclease [Pleurocapsa sp. PCC 7327]
gi|427981379|gb|AFY78979.1| restriction endonuclease [Pleurocapsa sp. PCC 7327]
Length = 167
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 93/140 (66%), Gaps = 7/140 (5%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L KA+ LE+ Q + + +F +P+V+R+RH ++V
Sbjct: 5 LVLNASYEPLNITSWRRAVVLLLKGKAEQLEHNGQQVYA---NFPLPSVIRLRHYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N++ RD +CQYC+ + E LT+DHV+P SRGG WENLV AC +CN +
Sbjct: 62 K---EIPLTRRNILERDRHSCQYCNYKGEQLTLDHVIPRSRGGGDTWENLVTACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAP 239
KG +T +EA M L P+ P
Sbjct: 119 KGNRTPKEAGMHLRHQPRKP 138
>gi|126660948|ref|ZP_01732037.1| hypothetical protein CY0110_02672 [Cyanothece sp. CCY0110]
gi|126617766|gb|EAZ88546.1| hypothetical protein CY0110_02672 [Cyanothece sp. CCY0110]
Length = 165
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 101/172 (58%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L KA+ LE ++ I + F +P+V+R+RH ++V
Sbjct: 5 LVLNASYEPLNITSWRRAVVLLIKGKAEQLENNERLIYA---DFPLPSVIRLRHYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N++ RD TCQYC + E LT+DHV+P SRGG WENLV AC +CN +
Sbjct: 62 K---EIPLTRRNILERDRHTCQYCRYKGEQLTLDHVIPRSRGGGDTWENLVTACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EA M L P+ P Y L L R EWR+Y+
Sbjct: 119 KGNRTPKEAQMNLRHQPRRP--YSSLQFELVKHT------RGNLNQEWRKYI 162
>gi|425469020|ref|ZP_18847988.1| HNH nuclease [Microcystis aeruginosa PCC 9701]
gi|389884018|emb|CCI35657.1| HNH nuclease [Microcystis aeruginosa PCC 9701]
Length = 165
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 102/172 (59%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RAI L KA+ LE+ + + +P+V+R+R ++V
Sbjct: 5 LVLNASYEPLNITSWRRAIVLLLKGKAESLEHNGKVVCR---DLPLPSVIRLRQYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N++ RD+ TCQYC R E LTIDHV+P SRGG WENLVAAC +CN
Sbjct: 62 K---EIPLTRRNILERDHHTCQYCLYRGEQLTIDHVIPRSRGGGDTWENLVAACVRCNVH 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EANM L P+ P Y L L + R+ EWR+Y+
Sbjct: 119 KGNRTPKEANMSLRAQPRRP--YSSLHFEL------LKHTRENHNQEWRKYV 162
>gi|427722235|ref|YP_007069512.1| HNH endonuclease [Leptolyngbya sp. PCC 7376]
gi|427353955|gb|AFY36678.1| HNH endonuclease [Leptolyngbya sp. PCC 7376]
Length = 169
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 101/172 (58%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L +KA+ LE+ + ++ +F +P V+R+R +++
Sbjct: 5 LVLNASYEPLNITSWRRAVVLLLKDKAESLEHNGRVVHR---NFPLPTVIRLRQYIKIPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R + L+RKN++ RD TCQYC R E LT+DH++P SRGG WENLV AC +CN
Sbjct: 62 R---EIPLTRKNILERDRQTCQYCLKRGEQLTLDHILPKSRGGADSWENLVTACMRCNVH 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EA M L+ P+ P Y L L R EW++Y+
Sbjct: 119 KGNRTPKEAEMSLNTKPRKP--YSSLYFELVK------HTRGEANKEWKKYV 162
>gi|298489911|ref|YP_003720088.1| HNH endonuclease ['Nostoc azollae' 0708]
gi|298231829|gb|ADI62965.1| HNH endonuclease ['Nostoc azollae' 0708]
Length = 165
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 104/172 (60%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RAI L KA+ +E+ + I S F +P V+R+RH ++V
Sbjct: 5 LVLNASYEPLNITSWRRAIVLLIKGKAEHVEHNGKFIYS---DFPLPTVIRLRHYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N+++RD TCQYCS + + LT+DHV+P SRGG WEN+V AC CN +
Sbjct: 62 K---EIPLTRRNILHRDGHTCQYCSYTGDQLTLDHVMPRSRGGGDTWENIVTACVPCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EA M L P+ P Y L +T ++ G EW++Y+
Sbjct: 119 KGCRTPQEARMPLRHPPRQP--YSSLYFEVTK------HLKSGLHQEWQKYV 162
>gi|158421993|ref|YP_001523285.1| HNH endonuclease [Azorhizobium caulinodans ORS 571]
gi|158328882|dbj|BAF86367.1| HNH endonuclease [Azorhizobium caulinodans ORS 571]
Length = 185
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 88/140 (62%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P++V W+ I F+++ +++EYYD+ + SP +P+V+ +R ++ +
Sbjct: 22 LSYYPLSVWSWQDTIKAVFLDRVNIVEYYDKAVRSPGFELKLPSVVSLRTFVKPTR---- 77
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+ +R N+ RD FTCQYC +RE+LT DHV+P SRGG+ WEN+VAAC CN RKG
Sbjct: 78 QPAFTRFNVFLRDRFTCQYCGTREDLTFDHVIPRSRGGQTTWENVVAACSPCNLRKGGLM 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++A M ++ P P +D+
Sbjct: 138 PDDAKMWPAQTPFQPSVHDL 157
>gi|422302911|ref|ZP_16390269.1| HNH nuclease [Microcystis aeruginosa PCC 9806]
gi|425440401|ref|ZP_18820704.1| HNH nuclease [Microcystis aeruginosa PCC 9717]
gi|425465905|ref|ZP_18845208.1| HNH nuclease [Microcystis aeruginosa PCC 9809]
gi|389719169|emb|CCH96961.1| HNH nuclease [Microcystis aeruginosa PCC 9717]
gi|389792184|emb|CCI12064.1| HNH nuclease [Microcystis aeruginosa PCC 9806]
gi|389831776|emb|CCI25176.1| HNH nuclease [Microcystis aeruginosa PCC 9809]
Length = 165
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 103/173 (59%), Gaps = 17/173 (9%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RAI L KA+ LE+ + + +P+V+R+R ++V
Sbjct: 5 LVLNASYEPLNITSWRRAIVLLLKGKAESLEHNGKVVCR---DLPLPSVIRLRQYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N++ RD+ TCQYC R E LTIDHV+P SRGG WENLVAAC +CN
Sbjct: 62 K---EIPLTRRNILERDHHTCQYCLYRGEQLTIDHVIPRSRGGGDTWENLVAACVRCNVH 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTP-VEWRQYL 271
KG +T +EANM L P+ P +S +L+ +G EWR+Y+
Sbjct: 119 KGNRTPKEANMSLHAQPRR---------PYSSLHFELLKHTRGNHNHEWRKYV 162
>gi|78185552|ref|YP_377986.1| HNH nuclease [Synechococcus sp. CC9902]
gi|78169846|gb|ABB26943.1| HNH nuclease [Synechococcus sp. CC9902]
Length = 174
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 102/173 (58%), Gaps = 16/173 (9%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ + KA+ LE D++ G+ ++P V+R+R ++V
Sbjct: 13 LVLNASYEPLNITTWRRAMVMMLKGKAESLEQ-DESREIRRGT-HLPTVIRLRQYVRVPF 70
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R + L+R+N+ YRDN +CQYC S E L+IDHV+P SRGG W+N+ AC CN R
Sbjct: 71 R---QVPLTRRNVFYRDNHSCQYCGCSGEPLSIDHVIPRSRGGPDDWDNITTACLSCNVR 127
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLR-VRKGTPVEWRQYL 271
KG +T EA M L RVP+ PL+S + R + G EW +Y+
Sbjct: 128 KGNRTPGEAEMPLKRVPRR---------PLSSLSFEATRQIHAGHHGEWAKYV 171
>gi|383763821|ref|YP_005442803.1| hypothetical protein CLDAP_28660 [Caldilinea aerophila DSM 14535 =
NBRC 104270]
gi|381384089|dbj|BAM00906.1| hypothetical protein CLDAP_28660 [Caldilinea aerophila DSM 14535 =
NBRC 104270]
Length = 177
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 63/142 (44%), Positives = 87/142 (61%), Gaps = 6/142 (4%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ Y P+++V +RAI L EKA++LE Q + + N + +P V+R+ H +++
Sbjct: 6 LVLNAGYEPLSLVSVRRAIVLLLREKAELLEATQQMLCAANRTIPVPLVIRLVHYVRLPH 65
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSREN---LTIDHVVPASRGGEWKWENLVAACFKCN 217
RR +R +M RD +TCQYC + LT+DHV+P SRGGE W NL AC +CN
Sbjct: 66 RRVPP---TRAAIMLRDAYTCQYCGEKPGQAALTVDHVIPRSRGGEHGWTNLATACKRCN 122
Query: 218 SRKGKKTLEEANMQLSRVPKAP 239
RKG +T EEA MQL R P P
Sbjct: 123 QRKGNQTPEEAGMQLIRRPFEP 144
>gi|313680599|ref|YP_004058338.1| hnh endonuclease [Oceanithermus profundus DSM 14977]
gi|313153314|gb|ADR37165.1| HNH endonuclease [Oceanithermus profundus DSM 14977]
Length = 176
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 98/175 (56%), Gaps = 15/175 (8%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQV 158
R LVL+ Y P+ + +R + L E AD + + +P+ +P+V+R+R ++
Sbjct: 7 RILVLNAGYEPLGLTTIRRGVILVQNETADAIIESQHFLRTPSRRVPVPSVIRLR---RM 63
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRE-NLTIDHVVPASRGGEWKWENLVAACFKCN 217
++R + L+R+N++ RD FTCQYC R +LTIDHV+P SRGG WENLVAAC CN
Sbjct: 64 IRRPLGRLALNRRNVLRRDGFTCQYCGKRSSHLTIDHVLPRSRGGRDAWENLVAACHACN 123
Query: 218 SRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYLP 272
+RKG +T EEA M L R P AP + L + P EW +LP
Sbjct: 124 TRKGDRTPEEAGMPLLRKPSAPGYLAWITFEL-----------REVPEEWVPFLP 167
>gi|354567027|ref|ZP_08986197.1| HNH endonuclease [Fischerella sp. JSC-11]
gi|353543328|gb|EHC12786.1| HNH endonuclease [Fischerella sp. JSC-11]
Length = 165
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 104/172 (60%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA L KA+ +E+ + + S F +P V+R+RH ++V
Sbjct: 5 LVLNASYEPLNITSWRRAAVLLIKGKAERVEHNGKFLYS---DFPLPTVIRLRHYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N+++RD TCQYC + + LT+DHV+P SRGG WEN+V AC +CN +
Sbjct: 62 K---EIPLTRRNILHRDGHTCQYCGYTGDELTLDHVIPRSRGGGDSWENIVTACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T EA+M L P+ P Y L +T ++ GT EW++Y+
Sbjct: 119 KGCRTPHEAHMLLRHTPRRP--YSSLYFEVTK------HLKTGTHKEWQKYV 162
>gi|390442442|ref|ZP_10230438.1| Similar to Q4C713_CROWT HNH endonuclease [Microcystis sp. T1-4]
gi|425453737|ref|ZP_18833490.1| Similar to Q4C713_CROWT HNH endonuclease [Microcystis aeruginosa
PCC 9807]
gi|389800388|emb|CCI20262.1| Similar to Q4C713_CROWT HNH endonuclease [Microcystis aeruginosa
PCC 9807]
gi|389834246|emb|CCI34564.1| Similar to Q4C713_CROWT HNH endonuclease [Microcystis sp. T1-4]
Length = 165
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 103/173 (59%), Gaps = 17/173 (9%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RAI L KA+ LE+ + + +P+V+R+R ++V
Sbjct: 5 LVLNASYEPLNITSWRRAIVLLLKGKAESLEHNGKVVCR---DLPLPSVIRLRQYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N++ RD+ TCQYC R E LTIDHV+P SRGG WENLVAAC +CN
Sbjct: 62 K---EIPLTRRNILERDHHTCQYCLYRGEQLTIDHVIPRSRGGGDTWENLVAACVRCNVH 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTP-VEWRQYL 271
KG +T +EANM L P+ P +S +L+ +G EWR+Y+
Sbjct: 119 KGNRTPKEANMSLRAQPRR---------PYSSLHFELLKHTRGNHNHEWRKYV 162
>gi|427709704|ref|YP_007052081.1| HNH endonuclease [Nostoc sp. PCC 7107]
gi|427362209|gb|AFY44931.1| HNH endonuclease [Nostoc sp. PCC 7107]
Length = 165
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 105/172 (61%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA L KA+ +E+ + + + F +P V+R+RH ++V
Sbjct: 5 LVLNASYEPLNITSWRRAAVLLIKGKAERVEHNGRLLYA---GFPLPTVIRLRHYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+NL++RD TCQYC + + LT+DHV+P SRGG WEN+V AC +CN +
Sbjct: 62 K---EMPLTRRNLLHRDGHTCQYCGYTGDELTLDHVIPRSRGGGDSWENIVTACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EA+M L +P+ P Y L ++ ++ G EW++Y+
Sbjct: 119 KGNRTPQEAHMLLRHLPRQP--YSSLYFEVSK------HLKSGLHQEWQKYV 162
>gi|443326833|ref|ZP_21055474.1| restriction endonuclease [Xenococcus sp. PCC 7305]
gi|442793549|gb|ELS02995.1| restriction endonuclease [Xenococcus sp. PCC 7305]
Length = 165
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 94/140 (67%), Gaps = 7/140 (5%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L KA+ LEY D + S +F +P V+R+ + +++
Sbjct: 5 LVLNASYEPLNITSWRRAVVLLLKGKAERLEYTDHFLYS---NFPLPTVIRLLYYVRIPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N++ RD +CQYC+ + + LT+DH++P SRGG+ WENLVAAC +CN R
Sbjct: 62 K---EIPLTRRNILERDRHSCQYCTLKGDQLTLDHIMPRSRGGKDSWENLVAACVRCNVR 118
Query: 220 KGKKTLEEANMQLSRVPKAP 239
KG +T +EA M L R P+ P
Sbjct: 119 KGNRTPKEARMTLIRQPRKP 138
>gi|114765079|ref|ZP_01444224.1| HNH endonuclease family protein [Pelagibaca bermudensis HTCC2601]
gi|114542483|gb|EAU45509.1| HNH endonuclease family protein [Roseovarius sp. HTCC2601]
Length = 194
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 92/143 (64%), Gaps = 4/143 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ F+++ D++ YD+ + SP+ + IP+V+ ++ ++ R+R+
Sbjct: 31 LSYYPLSLWPWQEAVKAAFLDRVDIIAEYDEEVRSPSMTLRIPSVVVLKDYVK--PRKRV 88
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC S+ LT DHVVP + GG WEN+VAAC CN RKG K+
Sbjct: 89 A--FTRFNLFLRDEFCCQYCGSKGELTFDHVVPRAAGGVTSWENVVAACAPCNLRKGSKS 146
Query: 225 LEEANMQLSRVPKAPKDYDILAI 247
L +ANM L ++P+ P +++ +
Sbjct: 147 LRKANMSLRKIPRQPGASELMNV 169
>gi|334119275|ref|ZP_08493361.1| HNH endonuclease [Microcoleus vaginatus FGP-2]
gi|333458063|gb|EGK86682.1| HNH endonuclease [Microcoleus vaginatus FGP-2]
Length = 165
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 106/172 (61%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L KA+ +E+ + I +PN F +P V+R+RH ++V
Sbjct: 5 LVLNASYEPLNITNWRRAVVLLLKGKAEQVEHNGKFI-APN--FPLPTVIRLRHYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ L+R+N+++RD +CQYCS + ++LT+DHV+P SRGG WENLV AC +CN
Sbjct: 62 K---DIPLTRRNILHRDAHSCQYCSYTGDDLTLDHVIPRSRGGGDSWENLVTACVRCNVN 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EA M L P+ P + L +T V+ G EW++Y+
Sbjct: 119 KGSRTPKEAGMSLRYPPRKP--HSGLYFEVTK------HVKSGMHKEWQKYV 162
>gi|424869648|ref|ZP_18293332.1| putative HNH endonuclease [Leptospirillum sp. Group II 'C75']
gi|206602938|gb|EDZ39418.1| Probable HNH endonuclease [Leptospirillum sp. Group II '5-way CG']
gi|387220416|gb|EIJ75110.1| putative HNH endonuclease [Leptospirillum sp. Group II 'C75']
Length = 186
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 100/174 (57%), Gaps = 12/174 (6%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
L+L+ +Y P+ VV W++A+ L F K +++E YD+ I S + + +PAV+R+ L+
Sbjct: 6 LLLNATYEPLKVVPWQKAVHLFFQGKIEIVETYDRQIASAHLTMRMPAVVRLFRLVSFHH 65
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCN 217
R++ SR+ L RD+F CQYC R +LT DHV+PA+RGG WEN+V AC KCN
Sbjct: 66 VRQMVK-FSRETLFTRDSFCCQYCGKRFDKHDLTFDHVLPAARGGPKTWENIVTACRKCN 124
Query: 218 SRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
RK KT EEA M+L + + P + A + M+ + P W YL
Sbjct: 125 HRKSGKTPEEAGMKLLKKAERPH--------WSPAILVMMNLNCRGPKVWENYL 170
>gi|410478005|ref|YP_006765642.1| HNH endonuclease [Leptospirillum ferriphilum ML-04]
gi|124516140|gb|EAY57648.1| probable HNH endonuclease [Leptospirillum rubarum]
gi|406773257|gb|AFS52682.1| putative HNH endonuclease [Leptospirillum ferriphilum ML-04]
Length = 186
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 100/174 (57%), Gaps = 12/174 (6%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
L+L+ +Y P+ VV W++A+ L F K +++E YD+ I S + + +PAV+R+ L+
Sbjct: 6 LLLNATYEPLKVVPWQKAVHLFFQGKIEIVETYDRQIASAHLTMRMPAVVRLFRLVSFHH 65
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCN 217
R++ SR+ L RD+F CQYC R +LT DHV+PA+RGG WEN+V AC KCN
Sbjct: 66 VRQMVK-FSRETLFTRDSFCCQYCGKRFDKHDLTFDHVLPAARGGPKTWENIVTACRKCN 124
Query: 218 SRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
RK KT EEA M+L + + P + A + M+ + P W YL
Sbjct: 125 HRKSGKTPEEAGMKLLKKAERPH--------WSPAILVMMNLNCRGPKVWENYL 170
>gi|414077628|ref|YP_006996946.1| HNH endonuclease [Anabaena sp. 90]
gi|413971044|gb|AFW95133.1| HNH endonuclease [Anabaena sp. 90]
Length = 165
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 104/172 (60%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA L KA+ LEY + + S F +P V+R+RH ++V
Sbjct: 5 LVLNASYEPLNITSWRRATVLLIKGKAERLEYNGKFLYS---DFPMPTVIRLRHYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
++ L+R+N+++RD+ TCQYC + + LT+DHV+P SRGG WEN+ AC +CN +
Sbjct: 62 ---MEIPLTRRNILHRDSHTCQYCGHTGDGLTLDHVIPRSRGGGDTWENITTACVRCNIK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EA M L +P+ P Y L +T ++ G EW++Y+
Sbjct: 119 KGCRTPQEARMPLRNLPRQP--YSSLYFEVTK------HLKSGLHQEWQKYV 162
>gi|428307025|ref|YP_007143850.1| HNH endonuclease [Crinalium epipsammum PCC 9333]
gi|428248560|gb|AFZ14340.1| HNH endonuclease [Crinalium epipsammum PCC 9333]
Length = 165
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 105/172 (61%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L KA+ +E+ + + F +P V+R+RH ++V
Sbjct: 5 LVLNASYEPLNITSWRRAVVLMLKGKAEQVEHNGKMLYP---DFPLPTVIRLRHYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N+++RD+ +CQYC + ++LT+DHV+P SRGG WEN+ AC +CN +
Sbjct: 62 K---EIPLTRRNILHRDSHSCQYCGCTGDDLTLDHVLPRSRGGGDTWENIATACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EANM L P+ P Y L + V+ GT EW++Y+
Sbjct: 119 KGNRTPKEANMFLHHQPRRP--YSSLHFEVAK------HVKSGTHREWQKYV 162
>gi|425435112|ref|ZP_18815572.1| Similar to Q4C713_CROWT HNH endonuclease [Microcystis aeruginosa
PCC 9432]
gi|425445236|ref|ZP_18825269.1| Similar to Q4C713_CROWT HNH endonuclease [Microcystis aeruginosa
PCC 9443]
gi|425452099|ref|ZP_18831917.1| Similar to Q4C713_CROWT HNH endonuclease [Microcystis aeruginosa
PCC 7941]
gi|425458503|ref|ZP_18837991.1| Similar to Q4C713_CROWT HNH endonuclease [Microcystis aeruginosa
PCC 9808]
gi|159030396|emb|CAO91292.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|389675190|emb|CCH95686.1| Similar to Q4C713_CROWT HNH endonuclease [Microcystis aeruginosa
PCC 9432]
gi|389734830|emb|CCI01581.1| Similar to Q4C713_CROWT HNH endonuclease [Microcystis aeruginosa
PCC 9443]
gi|389766208|emb|CCI08066.1| Similar to Q4C713_CROWT HNH endonuclease [Microcystis aeruginosa
PCC 7941]
gi|389827380|emb|CCI21332.1| Similar to Q4C713_CROWT HNH endonuclease [Microcystis aeruginosa
PCC 9808]
Length = 165
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 103/173 (59%), Gaps = 17/173 (9%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RAI L KA+ LE+ + + +P+V+R+R ++V
Sbjct: 5 LVLNASYEPLNITSWRRAIVLLLKGKAESLEHNGKVVCR---DLPLPSVIRLRQYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N++ RD+ TCQYC R E LTIDHV+P SRGG WENLVAAC +CN
Sbjct: 62 K---EIPLTRRNILERDHHTCQYCLYRGEQLTIDHVIPRSRGGGDTWENLVAACVRCNVH 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTP-VEWRQYL 271
KG +T +EANM L P+ P +S +L+ +G EWR+Y+
Sbjct: 119 KGNRTPKEANMSLLAQPRR---------PYSSLHFELLKHTRGNHNHEWRKYV 162
>gi|33864029|ref|NP_895589.1| HNH endonuclease family protein [Prochlorococcus marinus str. MIT
9313]
gi|33635613|emb|CAE21937.1| HNH endonuclease family protein [Prochlorococcus marinus str. MIT
9313]
Length = 181
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 99/173 (57%), Gaps = 16/173 (9%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ + F KA+ LE + + +P V+R+RH ++V
Sbjct: 5 LVLNASYEPLNITTWRRALVMMFKGKAESLEQDSSRMVREDT--MLPTVIRLRHFVRVPF 62
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R + L+R+N+ +RD CQYC + E L+IDHV+P SRGG WEN+ AC CN R
Sbjct: 63 R---QLPLTRRNVFFRDGHCCQYCGYQGEKLSIDHVIPRSRGGSDTWENVTTACLICNVR 119
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLR-VRKGTPVEWRQYL 271
KG +T +EA M L R+P+ PL+S + R + G EW +Y+
Sbjct: 120 KGSRTPQEAEMPLHRLPRR---------PLSSLSFEATRQIHSGRHSEWEKYV 163
>gi|126728603|ref|ZP_01744418.1| HNH endonuclease family protein [Sagittula stellata E-37]
gi|126710533|gb|EBA09584.1| HNH endonuclease family protein [Sagittula stellata E-37]
Length = 194
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 90/141 (63%), Gaps = 4/141 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ +F+++ D++ YD+ + SP+ S IP+V+ ++ ++ KR
Sbjct: 31 LSYYPLSLWTWQEAVKAKFLDRVDIVAEYDEVVRSPSMSIRIPSVVVLKDFVKPQKR--- 87
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC ++ LT DHV+P +RGG WEN+VAAC CN RKG ++
Sbjct: 88 -VAFTRFNLFLRDEFRCQYCGTKAELTFDHVIPRARGGITSWENVVAACAPCNLRKGSRS 146
Query: 225 LEEANMQLSRVPKAPKDYDIL 245
L ++ + L +VP+ P ++L
Sbjct: 147 LRQSGLSLRKVPRQPTAGELL 167
>gi|384920213|ref|ZP_10020228.1| HNH endonuclease family protein [Citreicella sp. 357]
gi|384465920|gb|EIE50450.1| HNH endonuclease family protein [Citreicella sp. 357]
Length = 194
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 89/141 (63%), Gaps = 4/141 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ F+E+ D++ YD+T+ SP+ + IP+V+ ++ ++ R+R+
Sbjct: 31 LSYYPLSLWPWQEAVKAAFLERVDIVAEYDETVRSPSMTLKIPSVVVLKDYVK--PRKRV 88
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC S+ LT DHVVP + GG WEN+VAAC CN RKG K+
Sbjct: 89 A--FTRFNLFLRDEFRCQYCGSKGELTFDHVVPRASGGITSWENVVAACAPCNLRKGSKS 146
Query: 225 LEEANMQLSRVPKAPKDYDIL 245
L A M L + P+ P +++
Sbjct: 147 LRRAGMNLRKTPRQPGASELM 167
>gi|197106299|ref|YP_002131676.1| restriction endonuclease [Phenylobacterium zucineum HLK1]
gi|196479719|gb|ACG79247.1| restriction endonuclease [Phenylobacterium zucineum HLK1]
Length = 186
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ I F+++ DV+ YDQ I+SP+ +P+V+ ++H V + R
Sbjct: 23 LSYYPLSLWPWQEVIKAVFLDRVDVVSTYDQVIHSPSFEMKLPSVVSLKHY--VAQDR-- 78
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD+FTCQYC++ E LT DHV+P SRGG WEN+V AC +CN KG +T
Sbjct: 79 PPAFTRFNLFLRDSFTCQYCTAGEELTFDHVIPRSRGGRTTWENIVTACARCNLTKGGRT 138
Query: 225 LEEANMQLSRVPKAPKDYDI 244
EA+M P+ P Y++
Sbjct: 139 PHEAHMHPRMKPRRPTAYEL 158
>gi|148243245|ref|YP_001228402.1| McrA/HNH family nuclease [Synechococcus sp. RCC307]
gi|147851555|emb|CAK29049.1| McrA/HNH family nuclease [Synechococcus sp. RCC307]
Length = 172
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 104/172 (60%), Gaps = 16/172 (9%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ + KA+ LE+ ++ + F P+V+R+R +++
Sbjct: 13 LVLNASYEPLNITSWRRAVVMVLKGKAEGLEHEERNLRQ---DFLAPSVIRLRQFVRIPF 69
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N+ RD+ TCQYC R + L++DHV+P SRGG+ WEN+ AC +CN R
Sbjct: 70 K---ELPLTRRNVFQRDHHTCQYCGYRGDKLSLDHVIPRSRGGQDTWENVTTACIRCNVR 126
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EA+M L+ VP+ P L A R +R + EWR+Y+
Sbjct: 127 KGNRTPKEADMPLNSVPRRPVST------LYFEATRQIRSGRE---EWRKYV 169
>gi|427718882|ref|YP_007066876.1| HNH endonuclease [Calothrix sp. PCC 7507]
gi|427351318|gb|AFY34042.1| HNH endonuclease [Calothrix sp. PCC 7507]
Length = 165
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 105/172 (61%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L KA+ +E+ + + S F +P V+R+RH ++V
Sbjct: 5 LVLNASYEPLNITSWRRAVVLLIKGKAERVEHNGRYLYS---DFPLPTVIRLRHYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N+++RD+ TCQYC + + LT+DHV+P SRGG WEN+V AC +CN +
Sbjct: 62 K---EIPLTRRNILHRDSHTCQYCGYTGDELTLDHVIPRSRGGGDTWENIVTACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T EA+M L P+ P Y L ++ ++ G EW++Y+
Sbjct: 119 KGSRTPHEAHMPLRHPPRQP--YSSLYFEVSK------HLKSGLHQEWQKYV 162
>gi|124024026|ref|YP_001018333.1| HNH endonuclease family protein [Prochlorococcus marinus str. MIT
9303]
gi|123964312|gb|ABM79068.1| HNH endonuclease family protein [Prochlorococcus marinus str. MIT
9303]
Length = 189
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 99/173 (57%), Gaps = 16/173 (9%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ + F KA+ LE + + +P V+R+RH ++V
Sbjct: 13 LVLNASYEPLNITTWRRALVMMFKGKAESLEQDSSRMIREDT--MLPTVIRLRHFVRVPF 70
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R + L+R+N+ +RD CQYC + E L+IDHV+P SRGG WEN+ AC CN R
Sbjct: 71 R---QLPLTRRNVFFRDGHCCQYCGYQGEKLSIDHVIPRSRGGSDTWENVTTACLICNVR 127
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLR-VRKGTPVEWRQYL 271
KG +T +EA M L R+P+ PL+S + R + G EW +Y+
Sbjct: 128 KGSRTPKEAEMPLHRLPRR---------PLSSLSFEATRQIHSGRHSEWEKYV 171
>gi|434391981|ref|YP_007126928.1| HNH endonuclease [Gloeocapsa sp. PCC 7428]
gi|428263822|gb|AFZ29768.1| HNH endonuclease [Gloeocapsa sp. PCC 7428]
Length = 165
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 106/172 (61%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L KA+ +E+ + + + F +P V+R+RH ++V
Sbjct: 5 LVLNASYEPLNITSWRRAVVLLIKGKAEQVEHNGKHLYA---DFPLPTVIRLRHYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N+++RD+ TCQYC ++LT+DHVVP SRGG WEN+V AC +CN +
Sbjct: 62 K---EIPLTRRNILHRDSHTCQYCGYMGDDLTLDHVVPRSRGGGDAWENIVTACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T EA+M L +P+ P Y L ++ ++ G EW++Y+
Sbjct: 119 KGNRTPVEAHMYLHHLPRKP--YSSLYFEVSK------HLKSGLHDEWQKYI 162
>gi|332711420|ref|ZP_08431352.1| restriction endonuclease [Moorea producens 3L]
gi|332349969|gb|EGJ29577.1| restriction endonuclease [Moorea producens 3L]
Length = 165
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 104/172 (60%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L KA+ +E+ + + + F +P V+R+RH ++V
Sbjct: 5 LVLNASYEPLNITNWRRAVVLLIKGKAERIEHNGKYVYA---DFPLPTVIRLRHYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N+++RD +CQYC S ++LT+DHV+P SR G WEN+V AC +CN +
Sbjct: 62 K---EIPLTRRNILHRDGHSCQYCGYSGDDLTLDHVIPRSRHGGESWENIVTACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EANM L P+ P Y L + ++ G EWR+Y+
Sbjct: 119 KGNRTPKEANMMLQTQPRRP--YSSLHFEIAK------HLKTGRHQEWRKYV 162
>gi|116075737|ref|ZP_01472996.1| HNH nuclease [Synechococcus sp. RS9916]
gi|116067052|gb|EAU72807.1| HNH nuclease [Synechococcus sp. RS9916]
Length = 166
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 98/172 (56%), Gaps = 14/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA + KA+ LE+ + F++P V+R+R + V
Sbjct: 5 LVLNASYEPLNITSWRRATVMMLKGKAEGLEHDPH--HCLRDDFHVPTVIRLRQFVHVPF 62
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRE-NLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R+ L+R+NL RD+ CQYC SR L+IDHV+P SRGG WEN+ AC +CN R
Sbjct: 63 RQLA---LTRRNLFQRDHHCCQYCGSRGGQLSIDHVLPRSRGGADTWENVTTACLRCNVR 119
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EANM L P P + L+ A R +++ G +W +Y+
Sbjct: 120 KGNRTPQEANMPLRHQPHRPAGH------LSFEARR--QIQSGQRADWAKYM 163
>gi|443311987|ref|ZP_21041608.1| restriction endonuclease [Synechocystis sp. PCC 7509]
gi|442777868|gb|ELR88140.1| restriction endonuclease [Synechocystis sp. PCC 7509]
Length = 165
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 103/172 (59%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA L KA+ +E+ + I + F +P V+R+RH ++V
Sbjct: 5 LVLNASYEPLNITSWRRAAVLLIKGKAEQVEHNGKFIYT---GFPLPTVIRLRHFVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N+++RD CQYC + ++LT+DHV+P SRGG WEN+V AC +CN R
Sbjct: 62 K---EIPLTRRNILHRDGHGCQYCGYTGDDLTLDHVIPRSRGGGETWENMVTACVRCNVR 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EA M L P+ P Y L ++ ++ G EW++Y+
Sbjct: 119 KGNRTPQEAKMPLFHQPRKP--YSSLYFEVSK------HLKSGLHQEWQKYI 162
>gi|254510333|ref|ZP_05122400.1| HNH endonuclease family protein [Rhodobacteraceae bacterium KLH11]
gi|221534044|gb|EEE37032.1| HNH endonuclease family protein [Rhodobacteraceae bacterium KLH11]
Length = 195
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 88/135 (65%), Gaps = 4/135 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI ++++ D++ YD+ + SP+ IP+V+ ++ ++ R+R+
Sbjct: 31 LSYYPLSLWPWQEAIKAAWLDRVDIVAEYDEVVRSPSTEIRIPSVVVLKDYVK--PRKRV 88
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC SRENLT DHVVP + GG W+N+VAAC CN RKG K+
Sbjct: 89 A--FTRFNLFLRDEFKCQYCGSRENLTFDHVVPRAAGGVTSWQNVVAACSPCNLRKGSKS 146
Query: 225 LEEANMQLSRVPKAP 239
L +A M L++ P+ P
Sbjct: 147 LRQARMSLNKPPRQP 161
>gi|427703099|ref|YP_007046321.1| restriction endonuclease [Cyanobium gracile PCC 6307]
gi|427346267|gb|AFY28980.1| restriction endonuclease [Cyanobium gracile PCC 6307]
Length = 166
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 99/172 (57%), Gaps = 14/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ + KA+ LE+ + P+ ++P V+R+R ++V
Sbjct: 5 LVLNASYEPLNITTWRRAMVMLLKGKAEGLEHDPERTIRPD--HFLPTVIRLRQFVRVPY 62
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ L+R+N+ +RD CQYC S E L+IDHVVP SRGG WEN+ AC CN R
Sbjct: 63 K---PLPLTRRNVFHRDGHACQYCGYSGEQLSIDHVVPRSRGGTDVWENVTTACLPCNVR 119
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T EA M L+R P+ P L+ A R R+R G EW +Y+
Sbjct: 120 KGNRTPREAGMPLAREPRRPLGS------LSFEANR--RIRSGQHQEWAKYV 163
>gi|373459756|ref|ZP_09551523.1| HNH endonuclease [Caldithrix abyssi DSM 13497]
gi|371721420|gb|EHO43191.1| HNH endonuclease [Caldithrix abyssi DSM 13497]
Length = 167
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 99/173 (57%), Gaps = 17/173 (9%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ +Y P+ + KRAI L + +K +V+E YD I S + S P+V+R+ ++
Sbjct: 7 LVLNQNYEPMAISTVKRAIILLYAQKVEVVERYDGIIRSISASMPCPSVIRLHSYIRKPF 66
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSREN-LTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R + L+RKN+M RD+ TCQYC +TIDHV+P S GG+ WENLVAAC CN++
Sbjct: 67 R---EIPLNRKNIMKRDHHTCQYCGKNSRPMTIDHVIPKSFGGKDTWENLVAACLACNAK 123
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTP-VEWRQYL 271
KG +T E A M+L R PK P + L+V G P W+ YL
Sbjct: 124 KGNRTPEMAGMKLLRTPKRP------------GHLFYLQVMAGKPHATWKPYL 164
>gi|33862084|ref|NP_893645.1| HNH endonuclease family protein [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33634302|emb|CAE19987.1| HNH endonuclease family protein [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 168
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 91/140 (65%), Gaps = 6/140 (4%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L KA+ LE DQ+ +G +P V+R+R+ ++V
Sbjct: 5 LVLNASYEPLNITSWRRAVILMIKGKAESLEE-DQSYAIHSGQ-NLPTVIRLRYYVKVPF 62
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R L+RKN++ RDN +CQYC+ R +L+IDHV+P SRGG WEN+ AC +CN +
Sbjct: 63 REVA---LTRKNILLRDNNSCQYCNHRGSDLSIDHVLPRSRGGTDNWENVTTACLRCNVQ 119
Query: 220 KGKKTLEEANMQLSRVPKAP 239
KG +T EEANM L R P P
Sbjct: 120 KGNRTPEEANMPLKRKPYRP 139
>gi|154247766|ref|YP_001418724.1| HNH endonuclease [Xanthobacter autotrophicus Py2]
gi|154161851|gb|ABS69067.1| HNH endonuclease [Xanthobacter autotrophicus Py2]
Length = 196
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 88/140 (62%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P++V W+ AI F+++ +++EYYD+ + SP +P+V+ +R ++ +
Sbjct: 33 LSYYPLSVWSWQDAIKAVFLDRVNIVEYYDKAVRSPGFEIRLPSVVSLRTFVKPTR---- 88
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+ +R N+ RD F+CQYC SRE+LT DH++P SRGG+ WEN+VAAC CN RKG
Sbjct: 89 QPAFTRFNVFLRDRFSCQYCGSREDLTFDHLIPRSRGGQTTWENVVAACSPCNLRKGSHM 148
Query: 225 LEEANMQLSRVPKAPKDYDI 244
+ M +++P P +D+
Sbjct: 149 PGDLGMWPAQMPYQPSVHDL 168
>gi|428773073|ref|YP_007164861.1| HNH endonuclease [Cyanobacterium stanieri PCC 7202]
gi|428687352|gb|AFZ47212.1| HNH endonuclease [Cyanobacterium stanieri PCC 7202]
Length = 165
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 93/140 (66%), Gaps = 7/140 (5%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ WKRA+ L KA+ LE+ I +F +P+V+R+R+ ++V
Sbjct: 5 LVLNASYEPLNITSWKRAVILLIKGKAEQLEHNGTFICQ---TFPLPSVIRLRYYVKVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+RKN++ RD TCQYC+ + E LT+DHV+P SRGG WENLVAAC +CN R
Sbjct: 62 K---EIPLTRKNVLERDRHTCQYCNYKGEQLTLDHVIPRSRGGPDTWENLVAACVRCNIR 118
Query: 220 KGKKTLEEANMQLSRVPKAP 239
KG +T +E+ M L + P+ P
Sbjct: 119 KGNRTPKESEMPLLKQPRKP 138
>gi|116072170|ref|ZP_01469438.1| HNH nuclease [Synechococcus sp. BL107]
gi|116065793|gb|EAU71551.1| HNH nuclease [Synechococcus sp. BL107]
Length = 166
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 101/173 (58%), Gaps = 16/173 (9%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ + KA+ LE D++ G+ ++P V+R+R ++V
Sbjct: 5 LVLNASYEPLNITTWRRAMVMMLKGKAESLEQ-DESREIRRGT-HLPTVIRLRQYVRVPF 62
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R + L+R+N+ YRDN CQYC S E L+IDHV+P SRGG W+N+ AC CN R
Sbjct: 63 R---QVPLTRRNVFYRDNHCCQYCGCSGEPLSIDHVIPRSRGGPDDWDNITTACLSCNVR 119
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLR-VRKGTPVEWRQYL 271
KG +T EA M L RVP+ PL+S + R + G EW +Y+
Sbjct: 120 KGNRTPGEAEMPLKRVPRR---------PLSSLSFEATRQIHAGHHGEWAKYV 163
>gi|123966943|ref|YP_001012024.1| HNH endonuclease family protein [Prochlorococcus marinus str. MIT
9515]
gi|123201309|gb|ABM72917.1| HNH endonuclease family protein [Prochlorococcus marinus str. MIT
9515]
Length = 187
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 92/140 (65%), Gaps = 6/140 (4%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RAI L KA+ LE DQ+ +G +P V+R+R+ ++V
Sbjct: 22 LVLNASYEPLNITSWRRAIILMIKGKAESLEE-DQSYLIHSGQ-KLPTVIRLRYYVKVPF 79
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R + L+RKN++ RDN +CQYC+ R +L+IDHV+P SRGG WEN+ AC +CN +
Sbjct: 80 R---EVALTRKNILLRDNNSCQYCNHRGSDLSIDHVLPRSRGGTDNWENVTTACLRCNVQ 136
Query: 220 KGKKTLEEANMQLSRVPKAP 239
KG +T EEANM L R P P
Sbjct: 137 KGSRTPEEANMPLKRKPYRP 156
>gi|186685682|ref|YP_001868878.1| HNH endonuclease [Nostoc punctiforme PCC 73102]
gi|186468134|gb|ACC83935.1| HNH endonuclease [Nostoc punctiforme PCC 73102]
Length = 165
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 104/172 (60%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L KA+ +E+ + + S F +P V+R+RH ++V
Sbjct: 5 LVLNASYEPLNITSWRRAVVLLIKGKAERVEHNGKFLYS---DFPLPTVIRLRHYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N+++RD+ CQYC + + LT+DHV+P SRGG WEN+V AC +CN +
Sbjct: 62 K---EIPLTRRNILHRDSHACQYCGYTGDELTLDHVIPRSRGGGDTWENIVTACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T EA+M L P+ P Y L ++ ++ G EW++Y+
Sbjct: 119 KGSRTPHEAHMPLRHPPRQP--YSSLYFEVSK------HLKSGLHTEWQKYV 162
>gi|84503037|ref|ZP_01001133.1| HNH endonuclease family protein [Oceanicola batsensis HTCC2597]
gi|84388581|gb|EAQ01453.1| HNH endonuclease family protein [Oceanicola batsensis HTCC2597]
Length = 194
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 84/135 (62%), Gaps = 4/135 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ F+++ D++ YD + SP+ IP+V+ ++ ++ KR
Sbjct: 31 LSYYPLSLWPWQEAVKAAFLDRVDIVAEYDAFVRSPSTEIRIPSVVVLKDYVKPQKR--- 87
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC SR +LT DHVVP + GG WEN+VAAC CN RKG K+
Sbjct: 88 -VAFTRFNLFLRDEFRCQYCGSRGDLTFDHVVPRASGGITSWENVVAACSPCNLRKGSKS 146
Query: 225 LEEANMQLSRVPKAP 239
L ANM L + P+AP
Sbjct: 147 LRRANMSLRKPPRAP 161
>gi|221639146|ref|YP_002525408.1| HNH endonuclease [Rhodobacter sphaeroides KD131]
gi|221159927|gb|ACM00907.1| HNH endonuclease [Rhodobacter sphaeroides KD131]
Length = 209
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 85/135 (62%), Gaps = 4/135 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ ++ YDQ + S + IP+V+ ++ + KR
Sbjct: 46 LSYYPLSLWPWQEAIKAAFLDRVSIVAEYDQVVRSQRAALRIPSVVVLKEFVSPQKR--- 102
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC ++ +LT DHVVP +RGG W+N+VAAC CN KG KT
Sbjct: 103 -VAFTRFNLFLRDEFRCQYCGAKGDLTFDHVVPRARGGVTSWQNVVAACSPCNLHKGSKT 161
Query: 225 LEEANMQLSRVPKAP 239
L++A M+L+R+P+ P
Sbjct: 162 LKQAGMRLARIPREP 176
>gi|254416250|ref|ZP_05030004.1| HNH endonuclease domain protein [Coleofasciculus chthonoplastes PCC
7420]
gi|196176932|gb|EDX71942.1| HNH endonuclease domain protein [Coleofasciculus chthonoplastes PCC
7420]
Length = 165
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 104/172 (60%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+NV W+RA+ L KA+ +E+ + + +P V+R+RH ++V
Sbjct: 5 LVLNASYEPLNVTNWRRAVVLMLKGKAEQIEHNGKYVYP---ELPLPTVIRLRHYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N++YRD+ +CQYC + ++LT+DHV+P SR G WEN+V AC +CN +
Sbjct: 62 K---EIPLTRRNILYRDSHSCQYCGYTGDDLTLDHVIPRSRHGGDSWENIVTACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EANM L P+ P Y L + +V+ G EWR+Y+
Sbjct: 119 KGNRTPKEANMILRHQPRRP--YSSLHFEVAK------QVKGGVHQEWRKYV 162
>gi|383783742|ref|YP_005468309.1| HNH endonuclease [Leptospirillum ferrooxidans C2-3]
gi|383082652|dbj|BAM06179.1| putative HNH endonuclease [Leptospirillum ferrooxidans C2-3]
Length = 189
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 105/178 (58%), Gaps = 12/178 (6%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQV 158
+ L+L+ +Y P+ +V W++A+ L F K +V+E +D+ I+S + + +P+V+R++ ++
Sbjct: 4 QALLLNATYEPLKIVSWEKAVTLIFQGKVEVVETFDREIHSVSMAMKMPSVIRLQRMVSF 63
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFK 215
+ R++ SR+ + RD ++CQYC R +LT DHV PA+RGG WEN+V AC K
Sbjct: 64 HQIRQMVR-FSRETIFARDGYSCQYCGKRFDKSDLTFDHVFPAARGGTKTWENIVTACKK 122
Query: 216 CNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYLPQ 273
CN K +T +EA M+L + KA + + AI L + +R P W YL Q
Sbjct: 123 CNHLKSGQTPDEAGMRL--LKKAARPHWFPAILLH------MSLRSEMPSSWSNYLFQ 172
>gi|333798365|ref|YP_004508638.1| HNH endonuclease [Synechococcus phage S-CRM01]
gi|331035594|gb|AEC53151.1| HNH endonuclease [Synechococcus phage S-CRM01]
Length = 156
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 92/155 (59%), Gaps = 17/155 (10%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ Y P+N+ WKRA+ L +KA ++ V+R+ H +++
Sbjct: 11 LVLNSDYNPINITTWKRAVLLLVKQKAHIIS---------------SKVIRLVHYIKLPY 55
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + N+ +R + RD++TC YC ++E LT+DH++P S+GG+ WENLV C KCN +K
Sbjct: 56 SRLMANHPTRALIYKRDDYTCGYCGAKEGLTLDHIIPQSKGGQDTWENLVTCCLKCNLKK 115
Query: 221 GKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIR 255
G K L E NM+L+ VP+AP Y+ + + L + ++
Sbjct: 116 GDKMLSETNMKLNVVPRAP--YNKMTLTLKKSGVK 148
>gi|429206547|ref|ZP_19197813.1| HNH endonuclease family protein [Rhodobacter sp. AKP1]
gi|428190588|gb|EKX59134.1| HNH endonuclease family protein [Rhodobacter sp. AKP1]
Length = 194
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 91/150 (60%), Gaps = 9/150 (6%)
Query: 95 LACFRGLVLD-----ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAV 149
L + LVL+ +SY P+++ W+ AI F+++ ++ YDQ + S + IP+V
Sbjct: 16 LKHYPALVLNADYRPLSYYPLSLWPWQEAIKAAFLDRVSIVAEYDQVVRSQRAALRIPSV 75
Query: 150 LRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENL 209
+ ++ + KR +R NL RD F CQYC ++ +LT DHVVP +RGG W+N+
Sbjct: 76 VVLKEFVSPQKR----VAFTRFNLFLRDEFRCQYCGAKGDLTFDHVVPRARGGVTSWQNV 131
Query: 210 VAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
VAAC CN KG KTL++A M+L+R+P+ P
Sbjct: 132 VAACSPCNLHKGSKTLKQAGMRLARIPREP 161
>gi|77463281|ref|YP_352785.1| restriction endonuclease [Rhodobacter sphaeroides 2.4.1]
gi|77387699|gb|ABA78884.1| Probable Restriction endonuclease [Rhodobacter sphaeroides 2.4.1]
Length = 194
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 85/135 (62%), Gaps = 4/135 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ ++ YDQ + S + IP+V+ ++ + KR
Sbjct: 31 LSYYPLSLWPWQEAIKAAFLDRVSIVAEYDQVVRSQRAALRIPSVVVLKEFVSPQKR--- 87
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC ++ +LT DHVVP +RGG W+N+VAAC CN KG KT
Sbjct: 88 -VAFTRFNLFLRDEFRCQYCGAKGDLTFDHVVPRARGGVTSWQNVVAACSPCNLHKGSKT 146
Query: 225 LEEANMQLSRVPKAP 239
L++A M+L+R+P+ P
Sbjct: 147 LKQAGMRLARIPREP 161
>gi|428312035|ref|YP_007123012.1| restriction endonuclease [Microcoleus sp. PCC 7113]
gi|428253647|gb|AFZ19606.1| restriction endonuclease [Microcoleus sp. PCC 7113]
Length = 165
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 103/172 (59%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L KA+ +E+ + + S F +P V+R+RH ++V
Sbjct: 5 LVLNASYEPLNITNWRRAVVLLIKGKAEQVEHNGKYVYS---EFPLPTVIRLRHYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N+++RD +CQYC + + LT+DHVVP SR G WEN+V AC +CN +
Sbjct: 62 K---EIPLTRRNILHRDGHSCQYCGYTGDELTLDHVVPRSRHGGDTWENIVTACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EANM L P+ P Y L + V+ G EWR+Y+
Sbjct: 119 KGSRTPKEANMILRNQPRRP--YSSLHFEVAK------HVKGGLHQEWRKYV 162
>gi|126462155|ref|YP_001043269.1| HNH endonuclease [Rhodobacter sphaeroides ATCC 17029]
gi|332558159|ref|ZP_08412481.1| HNH endonuclease [Rhodobacter sphaeroides WS8N]
gi|126103819|gb|ABN76497.1| HNH endonuclease [Rhodobacter sphaeroides ATCC 17029]
gi|332275871|gb|EGJ21186.1| HNH endonuclease [Rhodobacter sphaeroides WS8N]
Length = 194
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 85/135 (62%), Gaps = 4/135 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ ++ YDQ + S + IP+V+ ++ + KR
Sbjct: 31 LSYYPLSLWPWQEAIKAAFLDRVSIVAEYDQVVRSQRAALRIPSVVVLKEFVSPQKR--- 87
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC ++ +LT DHVVP +RGG W+N+VAAC CN KG KT
Sbjct: 88 -VAFTRFNLFLRDEFRCQYCGAKGDLTFDHVVPRARGGVTSWQNVVAACSPCNLHKGSKT 146
Query: 225 LEEANMQLSRVPKAP 239
L++A M+L+R+P+ P
Sbjct: 147 LKQAGMRLARIPREP 161
>gi|33241131|ref|NP_876073.1| HNH endonuclease family protein [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33238661|gb|AAQ00726.1| McrA/HNH family nuclease [Prochlorococcus marinus subsp. marinus
str. CCMP1375]
Length = 170
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 100/173 (57%), Gaps = 16/173 (9%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSP-NGSFYIPAVLRVRHLLQVV 159
LVL+ SY P+N+ W+RA L KA+ LE + N P + +P V+R+R+ +++
Sbjct: 5 LVLNASYEPLNITTWRRATVLMMKGKAESLE---EDSNHPIRNNINLPTVIRLRYFIKIP 61
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
R L+RKNL+ RDN+ CQYC + E L+IDHV+P SRGG+ WEN+ AC CN
Sbjct: 62 YREVA---LNRKNLIQRDNYCCQYCGYAGEKLSIDHVLPRSRGGKDSWENVTTACLSCNI 118
Query: 219 RKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
+KG +T +EANM L R P P + L+ T ++ G EW +Y+
Sbjct: 119 KKGDQTPKEANMPLKRQPHKP--FGTLSFEATK------QIDSGLYKEWSKYV 163
>gi|319789125|ref|YP_004150758.1| HNH endonuclease [Thermovibrio ammonificans HB-1]
gi|317113627|gb|ADU96117.1| HNH endonuclease [Thermovibrio ammonificans HB-1]
Length = 180
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 89/154 (57%), Gaps = 8/154 (5%)
Query: 95 LACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLE-YYDQTINSPNGSFYIPAVLRVR 153
+ + LVLD +Y PV V K+A LE + + +VL+ Y+ + SP F P V+RV
Sbjct: 1 MVLYPTLVLDRTYLPVTVFSHKKAFLLEVLGRCEVLQHYFSVYLYSPTKKFPAPLVVRVP 60
Query: 154 HLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLV 210
LL R + +R+ + RDNFTC YC + TIDHV+P SRGGEW WENLV
Sbjct: 61 VLL----RHWQTASPTRRAVFIRDNFTCAYCGRVVKDSDATIDHVLPKSRGGEWSWENLV 116
Query: 211 AACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDI 244
C +CN RKG +T EEA M+L PK P +++
Sbjct: 117 TCCCECNQRKGDRTPEEAGMELLFRPKRPTAFEV 150
>gi|16329440|ref|NP_440168.1| hypothetical protein sll1193 [Synechocystis sp. PCC 6803]
gi|383321181|ref|YP_005382034.1| hypothetical protein SYNGTI_0272 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|383324351|ref|YP_005385204.1| hypothetical protein SYNPCCP_0272 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|383490235|ref|YP_005407911.1| hypothetical protein SYNPCCN_0272 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|384435501|ref|YP_005650225.1| hypothetical protein SYNGTS_0272 [Synechocystis sp. PCC 6803]
gi|451813599|ref|YP_007450051.1| hypothetical protein MYO_12740 [Synechocystis sp. PCC 6803]
gi|1651922|dbj|BAA16848.1| sll1193 [Synechocystis sp. PCC 6803]
gi|339272533|dbj|BAK49020.1| hypothetical protein SYNGTS_0272 [Synechocystis sp. PCC 6803]
gi|359270500|dbj|BAL28019.1| hypothetical protein SYNGTI_0272 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|359273671|dbj|BAL31189.1| hypothetical protein SYNPCCN_0272 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|359276841|dbj|BAL34358.1| hypothetical protein SYNPCCP_0272 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|407957318|dbj|BAM50558.1| hypothetical protein BEST7613_1627 [Bacillus subtilis BEST7613]
gi|451779568|gb|AGF50537.1| hypothetical protein MYO_12740 [Synechocystis sp. PCC 6803]
Length = 165
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 102/172 (59%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L +KA+ LE + I + +F +P+V+R+R ++V
Sbjct: 5 LVLNASYEPLNITHWQRAVVLLLKDKAEALENNGKLIYA---NFPLPSVIRLRQYIKVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N++ RD TCQYC+ + E LT+DHV+P SRGG WENLV AC +CN +
Sbjct: 62 K---EIPLTRRNVLERDRHTCQYCNYKGEQLTLDHVIPRSRGGGDSWENLVTACVRCNIK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T EA M L+ P+ P + I + R EWR+Y+
Sbjct: 119 KGNRTPREAQMSLNYTPRRPYSSLLFEI--------IKHTRNDRNHEWRKYV 162
>gi|116622520|ref|YP_824676.1| HNH endonuclease [Candidatus Solibacter usitatus Ellin6076]
gi|116225682|gb|ABJ84391.1| HNH endonuclease [Candidatus Solibacter usitatus Ellin6076]
Length = 175
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 98/175 (56%), Gaps = 17/175 (9%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ +RA+ L A E ++S S ++P+V+R LL+ +
Sbjct: 12 LVLNASYEPINICAARRALVLVLKGVASAEELSINAVHSARNSVHVPSVIR---LLEYRR 68
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
R LSRKN++ RD +TCQYC + LT+DHV+P SR GE WENLVA C CN
Sbjct: 69 IPRQTRALSRKNILMRDRYTCQYCHRSLASGELTLDHVIPRSRAGESAWENLVACCHYCN 128
Query: 218 SRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIR-MLRVRKGTPVEWRQYL 271
+RKG +T EEA M+L R P+ P + R ++R+ +WR+YL
Sbjct: 129 NRKGNRTPEEAGMKLLRQPR----------PFSLHTSRHLMRMMGKGEAQWRKYL 173
>gi|67921452|ref|ZP_00514970.1| HNH endonuclease [Crocosphaera watsonii WH 8501]
gi|67856564|gb|EAM51805.1| HNH endonuclease [Crocosphaera watsonii WH 8501]
Length = 165
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 101/172 (58%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
L+L+ SY P+N+ W+RA+ L KA+ LE ++ I++ F +P+V+R+RH ++V
Sbjct: 5 LLLNASYEPLNITSWRRAVVLLIKGKAEQLENNERLIHT---DFPLPSVIRLRHYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N++ RD TCQYC + + LT+DHV P SRGG WENLV AC +CN +
Sbjct: 62 K---EIPLTRRNILERDRHTCQYCGYKGDQLTLDHVFPRSRGGGDTWENLVTACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EA M L P+ P Y L L R EWR+Y+
Sbjct: 119 KGNRTPKEAQMNLRYQPRRP--YSSLQFELVKHT------RGNLNQEWRKYI 162
>gi|384438893|ref|YP_005653617.1| HNH endonuclease [Thermus sp. CCB_US3_UF1]
gi|359290026|gb|AEV15543.1| HNH endonuclease [Thermus sp. CCB_US3_UF1]
Length = 209
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 113/201 (56%), Gaps = 21/201 (10%)
Query: 72 LNVSGKGISGESEEYDSDEEFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLE 131
L + G+ G + SD L R LVL+ +Y + + KR++ L A+++
Sbjct: 24 LGLCYPGLVGPAHPKASD-----LDAPRVLVLNAAYEVLGLASIKRSVLLVLSGSAEMVS 78
Query: 132 YYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSREN-L 190
+ +++P+ +P+V+R++ L V+R + L+R+N++ RD +TCQYC + L
Sbjct: 79 ESGRFLHTPSTRIPVPSVIRLKRL---VRRGPSRIPLNRRNVLRRDRYTCQYCGRQGGEL 135
Query: 191 TIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLT 250
T+DHV+P SRGG+ WENLVAAC CN +KG +T EEA M+L + P+AP+ PL
Sbjct: 136 TVDHVLPRSRGGKGTWENLVAACRPCNLKKGDRTPEEAGMRLLKSPRAPRA------PLF 189
Query: 251 SAAIRMLRVRKGTPVEWRQYL 271
A + K P +WR YL
Sbjct: 190 LAEL------KEVPEDWRPYL 204
>gi|428317261|ref|YP_007115143.1| HNH endonuclease [Oscillatoria nigro-viridis PCC 7112]
gi|428240941|gb|AFZ06727.1| HNH endonuclease [Oscillatoria nigro-viridis PCC 7112]
Length = 165
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 106/172 (61%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L KA+ +E+ + I +PN F +P V+R+RH ++V
Sbjct: 5 LVLNASYEPLNITNWRRAVVLLLKGKAEQVEHNGKFI-APN--FPLPTVIRLRHYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ L+R+N+++RD +CQYCS + ++LT+DHV+P SRGG WENLV AC +CN
Sbjct: 62 K---DIPLTRRNILHRDAHSCQYCSYTGDDLTLDHVIPRSRGGGDCWENLVTACVRCNVN 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EA M L P+ P + L +T V+ G EW++Y+
Sbjct: 119 KGSRTPKEAGMPLRYPPRKP--HSGLYFEVTK------HVKSGMHKEWQKYV 162
>gi|17229949|ref|NP_486497.1| hypothetical protein all2457 [Nostoc sp. PCC 7120]
gi|17131549|dbj|BAB74156.1| all2457 [Nostoc sp. PCC 7120]
Length = 165
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 104/172 (60%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L KA+ +E+ + + S F +P V+R+RH ++V
Sbjct: 5 LVLNASYEPLNITSWRRAVVLLIKGKAERVEHNGRFLYS---DFPLPTVIRLRHYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N+++RD TCQYC + + LT+DHV P SRGG WEN+V AC +CN +
Sbjct: 62 K---EIPLTRRNILHRDGHTCQYCGYTGDELTLDHVNPRSRGGGDSWENIVTACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EA M L +P+ P Y L ++ ++ G EW++Y+
Sbjct: 119 KGSRTPQEARMPLRHLPRQP--YSSLYFEVSK------HLKSGLHQEWQKYV 162
>gi|428775094|ref|YP_007166881.1| HNH endonuclease [Halothece sp. PCC 7418]
gi|428689373|gb|AFZ42667.1| HNH endonuclease [Halothece sp. PCC 7418]
Length = 166
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 103/172 (59%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L KA+ LEY + I + F +P V+R+R+ ++V
Sbjct: 5 LVLNASYEPLNLTSWRRAVVLLLKGKAEQLEYNGKLIYT---GFPLPTVIRLRYYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N++ RD+ CQYC + + LT+DHV+P SRGG WEN+VAAC +CN +
Sbjct: 62 K---EIPLTRRNILERDSNRCQYCGYKGDQLTLDHVIPRSRGGGDTWENIVAACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T EA M L+R P+ P Y L L ++ EWR+Y+
Sbjct: 119 KGSRTPREAEMPLARPPRRP--YSSLHFELAR------HIQGNRNQEWRKYV 162
>gi|440680469|ref|YP_007155264.1| HNH endonuclease [Anabaena cylindrica PCC 7122]
gi|428677588|gb|AFZ56354.1| HNH endonuclease [Anabaena cylindrica PCC 7122]
Length = 165
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 104/172 (60%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RAI L KA+ +E+ + I + F +P V+R+RH ++V
Sbjct: 5 LVLNASYEPLNITSWRRAIVLLIKGKAEHVEHNGKFIYT---DFPLPTVIRLRHYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N+++RD+ TCQYC + + LT+DHV+P SRGG WEN+V AC +CN +
Sbjct: 62 K---EIPLTRRNILHRDSHTCQYCGYTGDELTLDHVMPRSRGGGDTWENIVTACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T EA M L P+ P Y L +T ++ G EW++Y+
Sbjct: 119 KGCRTPHEARMPLRYPPRQP--YSSLYFEVTK------HLKSGLHQEWQKYV 162
>gi|416384307|ref|ZP_11684590.1| HNH endonuclease family protein [Crocosphaera watsonii WH 0003]
gi|357265073|gb|EHJ13882.1| HNH endonuclease family protein [Crocosphaera watsonii WH 0003]
Length = 165
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 100/172 (58%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L KA+ LE ++ I + F +P+V+R+RH ++V
Sbjct: 5 LVLNASYEPLNITSWRRAVVLLIKGKAEQLENNERLIYT---DFPLPSVIRLRHYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N++ RD TCQYC + + LT+DHV P SRGG WENLV AC +CN +
Sbjct: 62 K---EIPLTRRNILERDRHTCQYCGYKGDQLTLDHVFPRSRGGGDTWENLVTACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EA M L P+ P Y L L R EWR+Y+
Sbjct: 119 KGNRTPKEAQMNLRYQPRRP--YSSLQFELVKHT------RGNLNQEWRKYI 162
>gi|429218896|ref|YP_007180540.1| restriction endonuclease [Deinococcus peraridilitoris DSM 19664]
gi|429129759|gb|AFZ66774.1| restriction endonuclease [Deinococcus peraridilitoris DSM 19664]
Length = 173
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 66/141 (46%), Positives = 89/141 (63%), Gaps = 2/141 (1%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQV 158
R LVL+ SY P+++ KRAI L A+VLE D + SP+ IP+V+R+R ++
Sbjct: 12 RVLVLNASYEPLHIASAKRAITLIQYGVAEVLEDSDDVVRSPSTVMRIPSVIRLRRYVRR 71
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
+ I N R+N++ RD +TCQYC +R+ LTIDHV P SRGG WEN+V AC +CN
Sbjct: 72 PRTHPIPFN--RRNVLRRDFYTCQYCGARQELTIDHVTPRSRGGRHVWENVVVACRECNQ 129
Query: 219 RKGKKTLEEANMQLSRVPKAP 239
RKG +T EEA L P+AP
Sbjct: 130 RKGNRTPEEAGYALRSKPRAP 150
>gi|428223517|ref|YP_007107614.1| HNH endonuclease [Geitlerinema sp. PCC 7407]
gi|427983418|gb|AFY64562.1| HNH endonuclease [Geitlerinema sp. PCC 7407]
Length = 165
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 104/172 (60%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L KA+ +E+ + + + +P V+R+RH ++V
Sbjct: 5 LVLNASYEPLNITSWRRAVVLLLKGKAEQVEHNGKVLYT---GLPLPTVIRLRHYIRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N+++RD +CQYC + + LT+DHV+P SRGG+ WEN+V AC +CN +
Sbjct: 62 K---EIPLTRRNILHRDGHSCQYCGYTGDELTLDHVLPRSRGGDDSWENMVTACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EAN+ L P+ P Y L + ++ G EW++Y+
Sbjct: 119 KGNRTPKEANLLLRTTPRKP--YSGLYFEVAK------HLKSGVHQEWKKYV 162
>gi|75906614|ref|YP_320910.1| HNH endonuclease [Anabaena variabilis ATCC 29413]
gi|75700339|gb|ABA20015.1| HNH endonuclease [Anabaena variabilis ATCC 29413]
Length = 165
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 103/172 (59%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L KA+ +E+ + S F +P V+R+RH ++V
Sbjct: 5 LVLNASYEPLNITSWRRAVVLLIKGKAERVEHNGSFLYS---DFPLPTVIRLRHYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N+++RD TCQYC + + LT+DHV P SRGG WEN+V AC +CN +
Sbjct: 62 K---EIPLTRRNILHRDGHTCQYCGYTGDELTLDHVNPRSRGGGDSWENIVTACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EA M L +P+ P Y L ++ ++ G EW++Y+
Sbjct: 119 KGSRTPQEARMPLRHLPRQP--YSSLYFEVSK------HLKNGLHQEWQKYV 162
>gi|428218652|ref|YP_007103117.1| HNH endonuclease [Pseudanabaena sp. PCC 7367]
gi|427990434|gb|AFY70689.1| HNH endonuclease [Pseudanabaena sp. PCC 7367]
Length = 165
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 98/172 (56%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L KA+ +E+ + + F +P V+R L+ V+
Sbjct: 5 LVLNASYEPLNITGWRRAVVLIIKGKAEQIEHNGKLLYP---GFPLPTVIR---LVYYVR 58
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ L+R+N+ +RD CQYC ENLT+DHV P SRGG WEN+V AC +CN +
Sbjct: 59 LPYKEIPLTRRNIFHRDAHMCQYCGYGGENLTLDHVYPKSRGGGESWENIVTACVRCNVQ 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EA M L R PK P Y L +T ++ G EWR+YL
Sbjct: 119 KGNRTPQEAQMPLGRSPKQP--YSGLYFEVTKY------LQNGGHQEWRKYL 162
>gi|428779374|ref|YP_007171160.1| restriction endonuclease [Dactylococcopsis salina PCC 8305]
gi|428693653|gb|AFZ49803.1| restriction endonuclease [Dactylococcopsis salina PCC 8305]
Length = 166
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 106/172 (61%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L KA+ LEY + I + F +P V+R+R+ ++V
Sbjct: 5 LVLNASYEPLNLTSWRRAVVLLLKGKAEQLEYNGKFIYT---DFPLPTVIRLRYYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N++ RD+ CQYC + + LT+DHV+P SRGG WEN+VAAC +CN +
Sbjct: 62 K---EIPLTRRNILERDSNRCQYCGYKGDQLTLDHVIPRSRGGGDSWENMVAACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EA M L+R P+ P Y L L R ++ + EWR+Y+
Sbjct: 119 KGSRTPKEAEMPLARPPRRP--YSSLHFELA----RHIQGERNQ--EWRKYV 162
>gi|390556712|ref|ZP_10243127.1| HNH endonuclease [Nitrolancetus hollandicus Lb]
gi|390174713|emb|CCF82413.1| HNH endonuclease [Nitrolancetus hollandicus Lb]
Length = 194
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 88/141 (62%), Gaps = 4/141 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ +Y P+NV ++RAI L KA+VLE T+ S +F P+V+R L+ +++
Sbjct: 22 LVLNYNYEPLNVCNFRRAIVLVISGKAEVLEADGVTLASARETFTAPSVIR---LVYLIR 78
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRE-NLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R R + LSR+ + RD + CQYC + +LTIDHV+P SRGG WENLV+AC CN R
Sbjct: 79 RPRPRVKLSRREIFIRDGYRCQYCGRQTGDLTIDHVIPRSRGGSHTWENLVSACRSCNHR 138
Query: 220 KGKKTLEEANMQLSRVPKAPK 240
KG K++ EA L P P+
Sbjct: 139 KGGKSVAEARFTLRCQPAEPR 159
>gi|284928623|ref|YP_003421145.1| restriction endonuclease [cyanobacterium UCYN-A]
gi|284809082|gb|ADB94787.1| restriction endonuclease [cyanobacterium UCYN-A]
Length = 167
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 93/146 (63%), Gaps = 7/146 (4%)
Query: 95 LACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRH 154
+ C + LVL+ SY P+N+ W+RA+ L KA+ LE I F +P+V+R+RH
Sbjct: 1 MICNKVLVLNASYEPLNITSWRRAVVLLIKGKAEQLENNKTLIYY---HFPLPSVIRLRH 57
Query: 155 LLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAAC 213
++V +R L+R+N++ RD +TCQYC+++ E LT+DHV+P SRGG WEN+V AC
Sbjct: 58 YVRVPYKRI---PLTRRNILERDCYTCQYCNAQTEKLTLDHVIPRSRGGGDTWENIVTAC 114
Query: 214 FKCNSRKGKKTLEEANMQLSRVPKAP 239
KCN +KG +T +EA M + K P
Sbjct: 115 VKCNIKKGNRTPKEAKMNIINSSKKP 140
>gi|46199598|ref|YP_005265.1| 5-methylcytosine-specific restriction enzyme A [Thermus
thermophilus HB27]
gi|55981629|ref|YP_144926.1| hypothetical protein TTHA1660 [Thermus thermophilus HB8]
gi|381191119|ref|ZP_09898630.1| hypothetical protein RLTM_09223 [Thermus sp. RL]
gi|384431840|ref|YP_005641200.1| HNH endonuclease [Thermus thermophilus SG0.5JP17-16]
gi|386359835|ref|YP_006058080.1| restriction endonuclease [Thermus thermophilus JL-18]
gi|46197224|gb|AAS81638.1| 5-methylcytosine-specific restriction enzyme A [Thermus
thermophilus HB27]
gi|55773042|dbj|BAD71483.1| conserved hypothetical protein [Thermus thermophilus HB8]
gi|333967308|gb|AEG34073.1| HNH endonuclease [Thermus thermophilus SG0.5JP17-16]
gi|380450908|gb|EIA38521.1| hypothetical protein RLTM_09223 [Thermus sp. RL]
gi|383508862|gb|AFH38294.1| restriction endonuclease [Thermus thermophilus JL-18]
Length = 170
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 103/174 (59%), Gaps = 16/174 (9%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQV 158
R LVL+ +Y + + KRA+ L A+++ +N+P+ +P+V+R++ +
Sbjct: 7 RVLVLNAAYEVLGLASIKRAVLLVLGGGAEMVSESGLYLNTPSTRIPVPSVVRLKRM--- 63
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSREN-LTIDHVVPASRGGEWKWENLVAACFKCN 217
V+RR + L+R+N++ RD +TCQYC + LT+DHV+P SRGG+ W+NLVAAC CN
Sbjct: 64 VRRRPGRVPLNRRNVLRRDRYTCQYCGQKGGELTVDHVLPKSRGGKSTWDNLVAACRSCN 123
Query: 218 SRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
RKG +T EEA M+L R PK P+ +PL L K P +WR ++
Sbjct: 124 LRKGDRTPEEAGMRLLRPPKPPR------VPL------FLLDLKEVPPDWRPFV 165
>gi|83815494|ref|YP_445315.1| HNH endonuclease domain-containing protein [Salinibacter ruber DSM
13855]
gi|294507191|ref|YP_003571249.1| HNH endonuclease [Salinibacter ruber M8]
gi|83756888|gb|ABC45001.1| HNH endonuclease domain protein [Salinibacter ruber DSM 13855]
gi|294343519|emb|CBH24297.1| HNH endonuclease [Salinibacter ruber M8]
Length = 166
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 90/140 (64%), Gaps = 4/140 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYD-QTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ Y + V +RA+ L ++K ++E D + + SP+ P+++R++ V
Sbjct: 6 LVLNQDYSALTVCSVQRAVVLMHLQKVHLVESADDRYVRSPSVELPWPSIVRLKQYANVP 65
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+R + LSRKN++ RD TCQYC ++ NLTIDHVVP SRGG WENLVAAC CN++
Sbjct: 66 YKRVM---LSRKNVLKRDRNTCQYCGAQSNLTIDHVVPKSRGGRDTWENLVAACVTCNNQ 122
Query: 220 KGKKTLEEANMQLSRVPKAP 239
KG T EEA+M+L+R P P
Sbjct: 123 KGDSTPEEADMELARQPFRP 142
>gi|343084955|ref|YP_004774250.1| HNH endonuclease [Cyclobacterium marinum DSM 745]
gi|342353489|gb|AEL26019.1| HNH endonuclease [Cyclobacterium marinum DSM 745]
Length = 172
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 90/147 (61%), Gaps = 4/147 (2%)
Query: 94 ELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQ-TINSPNGSFYIPAVLRV 152
E++ + LVL++ + PV VV + L ++EKA +L YD I S + F PAV+R+
Sbjct: 3 EISEKKVLVLNLDHSPVGVVNVHKGFVLTYLEKATLLVKYDYLQIRSIDHVFDYPAVIRL 62
Query: 153 RHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAA 212
H + + + L+R NL RD +TCQYC S ++LT+DHV+P S+GG+ W+NL+ A
Sbjct: 63 NHYKNIPYKGVL---LNRNNLFKRDKYTCQYCGSEKDLTLDHVIPKSKGGKTSWKNLITA 119
Query: 213 CFKCNSRKGKKTLEEANMQLSRVPKAP 239
C +CN+ KG KT EEA M L P P
Sbjct: 120 CHRCNTIKGNKTPEEAGMPLVSFPFKP 146
>gi|414165213|ref|ZP_11421460.1| hypothetical protein HMPREF9697_03361 [Afipia felis ATCC 53690]
gi|410882993|gb|EKS30833.1| hypothetical protein HMPREF9697_03361 [Afipia felis ATCC 53690]
Length = 185
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 88/140 (62%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ YD ++SP+ +P+V+ ++ ++
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIVANYDHAVHSPSFEMQLPSVVSLKSFVKPTTHPA- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F+CQYC S+E+LT DH++P SRGG+ WEN+VAAC CN RKG T
Sbjct: 81 ---FTRFNVFLRDRFSCQYCLSQEDLTFDHIIPRSRGGQTTWENVVAACSPCNLRKGSMT 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
+++ANM + P AP + +
Sbjct: 138 MQQANMFPRQTPYAPTVHQL 157
>gi|434400706|ref|YP_007134710.1| HNH endonuclease [Stanieria cyanosphaera PCC 7437]
gi|428271803|gb|AFZ37744.1| HNH endonuclease [Stanieria cyanosphaera PCC 7437]
Length = 165
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 92/145 (63%), Gaps = 17/145 (11%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFY-----IPAVLRVRHL 155
LVL+ SY P+N+ W+RA+ L KA+ LE+ NG F +P V+R+R+
Sbjct: 5 LVLNASYEPLNITSWRRAVVLLIKGKAEQLEH--------NGRFLYADVPLPTVIRLRYY 56
Query: 156 LQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACF 214
++V + + L+R+N++ RD TCQYC ++ E LT+DHV+P SRGG WENLVAAC
Sbjct: 57 VRVPYK---EIPLTRRNVLERDRHTCQYCRAKNEQLTLDHVIPRSRGGGDTWENLVAACV 113
Query: 215 KCNSRKGKKTLEEANMQLSRVPKAP 239
+CN +KG +T +EANM L P+ P
Sbjct: 114 RCNVKKGSRTPKEANMSLLTQPRRP 138
>gi|428220982|ref|YP_007105152.1| restriction endonuclease [Synechococcus sp. PCC 7502]
gi|427994322|gb|AFY73017.1| restriction endonuclease [Synechococcus sp. PCC 7502]
Length = 165
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 105/172 (61%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L KA+ +E+ + + +PN F +P V+R+ H + +
Sbjct: 5 LVLNASYEPLNITNWQRAVVLLLKGKAEQVEHNGKML-APN--FPLPTVIRLYHYVNLPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ L+R+N+++RD +CQYC + E+LT+DHV+P SR G WEN+V AC +CN +
Sbjct: 62 K---DVPLTRRNILHRDGHSCQYCGYTGEDLTLDHVIPKSRKGGDTWENMVTACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EANM L + P+ P + L +T +R G EW++YL
Sbjct: 119 KGNQTPKEANMPLRKNPRRP--HSGLYFEVTKY------LRSGGHQEWKKYL 162
>gi|427730869|ref|YP_007077106.1| restriction endonuclease [Nostoc sp. PCC 7524]
gi|427366788|gb|AFY49509.1| restriction endonuclease [Nostoc sp. PCC 7524]
Length = 165
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 103/172 (59%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA L KA+ +E+ + + + F +P V+R+RH ++V
Sbjct: 5 LVLNASYEPLNITSWRRAAVLLIKGKAERVEHNGRFLYA---DFPLPTVIRLRHYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N+++RD TCQYC + + LT+DHV+P SRGG WEN+V AC +CN +
Sbjct: 62 K---EIPLTRRNILHRDGHTCQYCGYTGDELTLDHVIPRSRGGGDTWENIVTACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T EA+M L P+ P Y L ++ ++ G EW++Y+
Sbjct: 119 KGSRTPHEAHMLLRHPPRQP--YSSLYFEVSK------HLKSGLHQEWQKYV 162
>gi|56751904|ref|YP_172605.1| restriction endonuclease [Synechococcus elongatus PCC 6301]
gi|81301011|ref|YP_401219.1| HNH nuclease [Synechococcus elongatus PCC 7942]
gi|56686863|dbj|BAD80085.1| restriction endonuclease [Synechococcus elongatus PCC 6301]
gi|81169892|gb|ABB58232.1| HNH nuclease [Synechococcus elongatus PCC 7942]
Length = 165
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 102/173 (58%), Gaps = 17/173 (9%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L +KA+ LE+ + I +P V+R+R Q V+
Sbjct: 5 LVLNASYEPLNITSWRRAVILLLKDKAESLEHNGRMILP---DLPLPTVIRLR---QYVR 58
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ L+R+N+++RD +CQYC ENLT+DH++P SRGG WEN++ AC +CN
Sbjct: 59 IPYNEIPLTRRNVLHRDGHSCQYCGYHGENLTLDHILPRSRGGADTWENVITACMRCNVH 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLR-VRKGTPVEWRQYL 271
KG +T +EA M L P+ P++S + R + +G+ EWR+Y+
Sbjct: 119 KGNRTPKEAGMPLMSTPRQ---------PVSSLYFEISRYLNQGSHQEWRKYV 162
>gi|444915323|ref|ZP_21235457.1| HNH endonuclease family protein [Cystobacter fuscus DSM 2262]
gi|444713552|gb|ELW54449.1| HNH endonuclease family protein [Cystobacter fuscus DSM 2262]
Length = 179
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 98/175 (56%), Gaps = 15/175 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY PV + W+RA+ L + K +V+E YDQ I S +P+++R L+ +
Sbjct: 4 LVLNPSYEPVARISWQRAVMLLWQGKVEVVEEYDQLIRSVTLEIRMPSIIR---FLRGSR 60
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
R+ SR N+ RD+ CQYC+ SR T DHVVP ++GG WEN+V AC CN
Sbjct: 61 RKGRGIKFSRDNVYMRDHCRCQYCNRKVSRPEATYDHVVPRAQGGRTTWENIVIACVPCN 120
Query: 218 SRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRM-LRVRKGTPVEWRQYL 271
KG +T E+A M+L +P+ P+ + +R+ KG P+ WR++L
Sbjct: 121 QAKGGRTPEQAGMKLLSIPEKPRK--------MAGTVRLAFTYEKGMPLPWRKFL 167
>gi|126697058|ref|YP_001091944.1| HNH endonuclease family protein [Prochlorococcus marinus str. MIT
9301]
gi|126544101|gb|ABO18343.1| HNH endonuclease family protein [Prochlorococcus marinus str. MIT
9301]
Length = 185
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 91/140 (65%), Gaps = 6/140 (4%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L KA+ LE + S + +P V+R+R+ ++V
Sbjct: 22 LVLNASYEPLNITSWRRAVILMIKGKAESLE--EDKSYSIHCGRKLPTVIRLRYYVKVPF 79
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R + +L+RKN++ RDN +CQYC+ R +L+IDHV+P SRGG WEN+ AC +CN +
Sbjct: 80 R---EVSLTRKNILLRDNNSCQYCNYRGSDLSIDHVLPRSRGGTDNWENVTTACLRCNVQ 136
Query: 220 KGKKTLEEANMQLSRVPKAP 239
KG +T EEANM L R P P
Sbjct: 137 KGNRTPEEANMPLKRKPYRP 156
>gi|16126439|ref|NP_421003.1| HNH endonuclease [Caulobacter crescentus CB15]
gi|221235220|ref|YP_002517656.1| HNH endonuclease family protein [Caulobacter crescentus NA1000]
gi|13423703|gb|AAK24171.1| HNH endonuclease family protein [Caulobacter crescentus CB15]
gi|220964392|gb|ACL95748.1| HNH endonuclease family protein [Caulobacter crescentus NA1000]
Length = 187
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 85/140 (60%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ I F+++ DV+ YDQ I+SP+ +P+V+ ++ Q V + R
Sbjct: 24 LSYYPLSLWPWQEVIKAVFLDRVDVVASYDQVIHSPSCEMRLPSVVALK---QYVPQER- 79
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD+F+CQYC S E+LT DHV+P SRGG WEN+V AC CN KG +T
Sbjct: 80 PPAFTRFNLFLRDSFSCQYCGSPEDLTFDHVIPRSRGGRTTWENIVTACAPCNLSKGGRT 139
Query: 225 LEEANMQLSRVPKAPKDYDI 244
EA MQ + P Y++
Sbjct: 140 PREAGMQPFHTARRPSMYEL 159
>gi|299132227|ref|ZP_07025422.1| HNH endonuclease [Afipia sp. 1NLS2]
gi|298592364|gb|EFI52564.1| HNH endonuclease [Afipia sp. 1NLS2]
Length = 173
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 89/140 (63%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ Y+ ++SP+ +P+V+ ++ ++
Sbjct: 10 LSYYPLSLWSWQDAIKAVFLDRVNIVASYEHAVHSPSFEMQLPSVVSLKSFVKPTTHPA- 68
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F+CQYCSS+E+LT DH++P SRGG+ WEN+VAAC CN +KG T
Sbjct: 69 ---FTRFNVFLRDRFSCQYCSSQEDLTFDHIIPRSRGGQTTWENVVAACSPCNLKKGSMT 125
Query: 225 LEEANMQLSRVPKAPKDYDI 244
+++ANM + P AP + +
Sbjct: 126 MQQANMFPRQTPYAPTVHQL 145
>gi|209883894|ref|YP_002287751.1| HNH endonuclease [Oligotropha carboxidovorans OM5]
gi|337742396|ref|YP_004634124.1| HNH endonuclease domain-containing protein [Oligotropha
carboxidovorans OM5]
gi|386031361|ref|YP_005952136.1| HNH endonuclease domain protein [Oligotropha carboxidovorans OM4]
gi|209872090|gb|ACI91886.1| HNH endonuclease [Oligotropha carboxidovorans OM5]
gi|336096427|gb|AEI04253.1| HNH endonuclease domain protein [Oligotropha carboxidovorans OM4]
gi|336100060|gb|AEI07883.1| HNH endonuclease domain protein [Oligotropha carboxidovorans OM5]
Length = 185
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 88/140 (62%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ YD ++SP+ +P+V+ ++ ++
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIVANYDHAVHSPSFEMQLPSVVSLKSFVKPTTHPA- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F+CQYC+S+E+LT DH++P SRGG+ WEN+VAAC CN +KG T
Sbjct: 81 ---FTRFNVFLRDRFSCQYCTSQEDLTFDHIIPRSRGGQTTWENVVAACSPCNLKKGSMT 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
+ +ANM + P AP + +
Sbjct: 138 MAQANMFPRQTPYAPTVHQL 157
>gi|338973106|ref|ZP_08628475.1| endonuclease [Bradyrhizobiaceae bacterium SG-6C]
gi|338233678|gb|EGP08799.1| endonuclease [Bradyrhizobiaceae bacterium SG-6C]
Length = 174
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 86/140 (61%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ F+++ +++ YD ++SP+ +P+V+ ++ +Q
Sbjct: 11 LSYYPLSLWSWQDAVKAVFLDRVNIVANYDHAVHSPSFEMKLPSVVSLKSFVQPTTHPA- 69
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F+CQYC S E+LT DH++P SRGG+ WEN+VAAC CN RKG T
Sbjct: 70 ---FTRFNVFLRDRFSCQYCGSPEDLTFDHIIPRSRGGQTTWENVVAACSPCNLRKGNMT 126
Query: 225 LEEANMQLSRVPKAPKDYDI 244
+ +A M +VP AP + +
Sbjct: 127 MAQAKMHPRQVPFAPTVHQL 146
>gi|440754506|ref|ZP_20933708.1| HNH endonuclease family protein [Microcystis aeruginosa TAIHU98]
gi|443668058|ref|ZP_21134119.1| HNH endonuclease family protein [Microcystis aeruginosa DIANCHI905]
gi|440174712|gb|ELP54081.1| HNH endonuclease family protein [Microcystis aeruginosa TAIHU98]
gi|443330855|gb|ELS45542.1| HNH endonuclease family protein [Microcystis aeruginosa DIANCHI905]
Length = 159
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 101/171 (59%), Gaps = 17/171 (9%)
Query: 103 LDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRR 162
++ SY P+N+ W+RAI L KA+ LE+ + + +P+V+R+R ++V +
Sbjct: 1 MNASYEPLNITSWRRAIVLLLKGKAESLEHNGKVVCR---DLPLPSVIRLRQYVRVPYK- 56
Query: 163 RIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
+ L+R+N++ RD+ TCQYC R E LTIDHV+P SRGG WENLVAAC +CN KG
Sbjct: 57 --EIPLTRRNILERDHHTCQYCLYRGEQLTIDHVIPRSRGGGDTWENLVAACVRCNVHKG 114
Query: 222 KKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTP-VEWRQYL 271
+T +EANM L P+ P +S +L+ +G EWR+Y+
Sbjct: 115 NRTPKEANMSLLAQPRR---------PYSSLHFELLKHTRGNHNHEWRKYV 156
>gi|56696989|ref|YP_167351.1| HNH endonuclease [Ruegeria pomeroyi DSS-3]
gi|56678726|gb|AAV95392.1| HNH endonuclease family protein [Ruegeria pomeroyi DSS-3]
Length = 194
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 85/136 (62%), Gaps = 4/136 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI ++++ D++ YD+ + SP+ IP+V+ ++ ++ KR
Sbjct: 31 LSYYPLSLWPWQEAIKAAWLDRVDIIAEYDEVVRSPSVVLRIPSVVVLKDYVKPQKR--- 87
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC + +LT DHVVP + GG WEN+VAAC CN RKG K+
Sbjct: 88 -VAFTRFNLFLRDEFRCQYCGGKGDLTFDHVVPRAAGGVTSWENVVAACAPCNLRKGSKS 146
Query: 225 LEEANMQLSRVPKAPK 240
L +ANM L R P+ P+
Sbjct: 147 LRQANMSLRRPPRRPQ 162
>gi|346992775|ref|ZP_08860847.1| HNH endonuclease family protein [Ruegeria sp. TW15]
Length = 195
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 86/135 (63%), Gaps = 4/135 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI ++++ D++ YD+ + SP+ IP+V+ ++ ++ R+R+
Sbjct: 31 LSYYPLSLWPWQEAIKAAWLDRVDIVAEYDEVVRSPSTEIRIPSVVVLKDYVK--PRKRV 88
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC SR LT DHVVP + GG W+N+VAAC CN RKG K+
Sbjct: 89 A--FTRFNLFLRDEFKCQYCGSRGELTFDHVVPRAAGGVTSWQNVVAACSPCNLRKGSKS 146
Query: 225 LEEANMQLSRVPKAP 239
L +A M LS+ P+ P
Sbjct: 147 LRQARMSLSKPPRQP 161
>gi|83952636|ref|ZP_00961366.1| HNH endonuclease family protein [Roseovarius nubinhibens ISM]
gi|83835771|gb|EAP75070.1| HNH endonuclease family protein [Roseovarius nubinhibens ISM]
Length = 203
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 83/135 (61%), Gaps = 4/135 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI ++++ D++ YD + SP+ IP+V+ ++ +Q KR
Sbjct: 40 LSYYPLSLWSWQEAIKAAWLDRVDIVAEYDHWVRSPSTEIRIPSVIVLKDYVQPQKR--- 96
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC ++ +LT DHVVP + GG WEN+VAAC CN RKG K+
Sbjct: 97 -VAFTRFNLFLRDEFRCQYCGTKGDLTFDHVVPRAAGGITSWENVVAACSPCNLRKGSKS 155
Query: 225 LEEANMQLSRVPKAP 239
L A M L + P+AP
Sbjct: 156 LRRAGMSLRKPPRAP 170
>gi|392375378|ref|YP_003207211.1| HNH endonuclease [Candidatus Methylomirabilis oxyfera]
gi|258593071|emb|CBE69382.1| HNH endonuclease [Candidatus Methylomirabilis oxyfera]
Length = 198
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 101/176 (57%), Gaps = 15/176 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ S+ P++V +RAI L + KA+ +E + ++SP+ F IPAV+R L + VK
Sbjct: 24 LVLNNSFEPLHVCTARRAIILLYTGKAERIEDSPRIVHSPSIIFVIPAVIR---LYRYVK 80
Query: 161 RRRIKN-NLSRKNLMYRDNFTCQYC--SSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
R I + ++KN++ RD +TCQYC + E +TIDHV+P S+GG WEN+V+AC CN
Sbjct: 81 RPIIPTVSFNKKNILKRDGYTCQYCGRNGGERMTIDHVIPRSQGGRTVWENVVSACRACN 140
Query: 218 SRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYLPQ 273
+KG K L E +M L R P P L I M G W +YLP+
Sbjct: 141 VKKGSKPLHEVSMSLLRKPAKPVSVVYLGI--------MFYSPHGIG-SWSKYLPR 187
>gi|320451269|ref|YP_004203365.1| HNH endonuclease [Thermus scotoductus SA-01]
gi|320151438|gb|ADW22816.1| HNH endonuclease [Thermus scotoductus SA-01]
Length = 174
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 106/179 (59%), Gaps = 16/179 (8%)
Query: 94 ELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVR 153
+L R LVL+ +Y + + KR++ L A++L + +++P+ +P+V+R++
Sbjct: 6 DLDAPRVLVLNAAYEVLGLASIKRSVLLVLSGGAEMLSESGRYLHTPSTRIPVPSVIRLK 65
Query: 154 HLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSREN-LTIDHVVPASRGGEWKWENLVAA 212
L V+R + L+R+N++ RD +TCQYC + LT+DHV+P SRGG WENLVAA
Sbjct: 66 RL---VRRGPSRIPLNRRNILRRDRYTCQYCGRQGGELTVDHVLPRSRGGRSTWENLVAA 122
Query: 213 CFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
C CN +KG +T EEA M+L ++P+APK PL + + K P +W+ YL
Sbjct: 123 CRSCNLKKGDRTPEEAGMRLLKLPRAPK------APLFLSDL------KEVPEDWQPYL 169
>gi|149914717|ref|ZP_01903247.1| HNH endonuclease [Roseobacter sp. AzwK-3b]
gi|149811510|gb|EDM71345.1| HNH endonuclease [Roseobacter sp. AzwK-3b]
Length = 194
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 84/135 (62%), Gaps = 4/135 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ ++++ D++ Y+ T+ SP+ IP+V+ ++ ++ KR
Sbjct: 31 LSYYPLSLWSWQDAVKAVYLDRVDIVAEYEHTVRSPSTEIRIPSVIVLKDFVKPQKR--- 87
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC ++ +LT DHVVP + GG WEN+VAAC KCN RKG K+
Sbjct: 88 -VAFTRFNLFLRDEFCCQYCGAKGDLTFDHVVPRASGGITSWENVVAACSKCNLRKGSKS 146
Query: 225 LEEANMQLSRVPKAP 239
L A M L + P+ P
Sbjct: 147 LRHAGMSLQKPPRQP 161
>gi|84687000|ref|ZP_01014883.1| HNH endonuclease family protein [Maritimibacter alkaliphilus
HTCC2654]
gi|84664974|gb|EAQ11455.1| HNH endonuclease family protein [Rhodobacterales bacterium
HTCC2654]
Length = 172
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 85/135 (62%), Gaps = 4/135 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ YD+ + SP+ IP+V+ ++ ++ KR
Sbjct: 9 LSYYPLSLWPWQEAIKAAFLDRVNIIAEYDEVVRSPSMEIRIPSVVVLKDYVKPQKR--- 65
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC S+ +LT DHVVP +RGG WEN+VAAC KCN RKG K
Sbjct: 66 -VAFTRFNLFLRDEFRCQYCGSKGDLTFDHVVPRARGGVTSWENVVAACSKCNLRKGSKH 124
Query: 225 LEEANMQLSRVPKAP 239
L ++ + L + P+ P
Sbjct: 125 LHQSGLSLRKPPRQP 139
>gi|254526561|ref|ZP_05138613.1| HNH nuclease [Prochlorococcus marinus str. MIT 9202]
gi|221537985|gb|EEE40438.1| HNH nuclease [Prochlorococcus marinus str. MIT 9202]
Length = 168
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 92/140 (65%), Gaps = 6/140 (4%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L KA+ LE D++ + +G +P V+R+ + ++V
Sbjct: 5 LVLNASYEPLNITSWRRAVILMIKGKAESLEE-DKSFSIHSGK-KLPTVIRLLYYVKVPF 62
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R + +L+RKN++ RDN CQYC+ R +L+IDHV+P SRGG WEN+ AC +CN +
Sbjct: 63 R---EVSLTRKNILLRDNNACQYCNYRGSDLSIDHVLPRSRGGTDNWENVTTACLRCNVQ 119
Query: 220 KGKKTLEEANMQLSRVPKAP 239
KG +T EEANM L R P P
Sbjct: 120 KGNRTPEEANMPLKRKPYRP 139
>gi|297565846|ref|YP_003684818.1| HNH endonuclease [Meiothermus silvanus DSM 9946]
gi|296850295|gb|ADH63310.1| HNH endonuclease [Meiothermus silvanus DSM 9946]
Length = 174
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 97/175 (55%), Gaps = 15/175 (8%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQV 158
R LVL+ Y + + KRA+ L ADV+E + +P+ + +P+V+R++ L
Sbjct: 9 RVLVLNAGYEALGLASVKRAVILVMNGTADVVEESGDYLRTPSRPYPVPSVIRLKRL--- 65
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRE-NLTIDHVVPASRGGEWKWENLVAACFKCN 217
V+R + L+R+N++ RD +TCQYC R +LT+DHV+P SRGG WENLV AC CN
Sbjct: 66 VRRPPGRLALNRRNVLRRDAYTCQYCGRRGGDLTVDHVLPKSRGGRSSWENLVTACRPCN 125
Query: 218 SRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYLP 272
+K +T EEA M+L + P P+ +L L P WR YLP
Sbjct: 126 LKKKNRTPEEAGMRLIKRPVPPRHSILLVADLPH-----------LPEAWRTYLP 169
>gi|414171531|ref|ZP_11426442.1| hypothetical protein HMPREF9695_00088 [Afipia broomeae ATCC 49717]
gi|410893206|gb|EKS40996.1| hypothetical protein HMPREF9695_00088 [Afipia broomeae ATCC 49717]
Length = 185
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ F+++ +++ YD ++SP +P+V+ ++ ++
Sbjct: 22 LSYYPLSLWSWQDAVKAVFLDRVNIVANYDHAVHSPTFEMRLPSVVSLKSFVKPTTHPA- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F+CQYC+S+E+LT DH++P SRGG+ WEN+VAAC CN RKG T
Sbjct: 81 ---FTRFNVFLRDRFSCQYCTSQEDLTFDHIIPRSRGGQTTWENVVAACSPCNLRKGNMT 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
+ +A M ++P AP + +
Sbjct: 138 MAQAKMHPRQMPFAPTVHQL 157
>gi|414170192|ref|ZP_11425806.1| hypothetical protein HMPREF9696_03661 [Afipia clevelandensis ATCC
49720]
gi|410884864|gb|EKS32684.1| hypothetical protein HMPREF9696_03661 [Afipia clevelandensis ATCC
49720]
Length = 185
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 85/140 (60%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ F+++ +++ YD ++SP+ +P+V+ ++ +Q
Sbjct: 22 LSYYPLSLWSWQDAVKAVFLDRVNIVANYDHAVHSPSFEMKLPSVVSLKSFVQPTTHPA- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F+CQYC S E+LT DH++P SRGG+ WEN+VAAC CN RKG T
Sbjct: 81 ---FTRFNVFLRDRFSCQYCGSPEDLTFDHIIPRSRGGQTTWENVVAACSPCNLRKGNMT 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
+ +A M + P AP + +
Sbjct: 138 MAQAKMHPRQTPFAPTVHQL 157
>gi|260433639|ref|ZP_05787610.1| HNH endonuclease family protein [Silicibacter lacuscaerulensis
ITI-1157]
gi|260417467|gb|EEX10726.1| HNH endonuclease family protein [Silicibacter lacuscaerulensis
ITI-1157]
Length = 195
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 86/135 (63%), Gaps = 4/135 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI ++++ D++ YD+ + SP+ IP+V+ ++ ++ R+R+
Sbjct: 31 LSYYPLSLWPWQEAIKAAWLDRVDIVAEYDEVVRSPSTEIRIPSVVVLKDYVK--PRKRV 88
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC SR +LT DHVVP + GG W+N+VAAC CN RKG K+
Sbjct: 89 A--FTRFNLFLRDEFRCQYCGSRGDLTFDHVVPRAAGGVTSWQNVVAACSPCNLRKGSKS 146
Query: 225 LEEANMQLSRVPKAP 239
L +A M L + P+ P
Sbjct: 147 LRQAGMTLRKPPRQP 161
>gi|209522715|ref|ZP_03271273.1| HNH endonuclease [Arthrospira maxima CS-328]
gi|376007478|ref|ZP_09784673.1| HNH endonuclease:HNH nuclease [Arthrospira sp. PCC 8005]
gi|423063241|ref|ZP_17052031.1| HNH endonuclease [Arthrospira platensis C1]
gi|209496764|gb|EDZ97061.1| HNH endonuclease [Arthrospira maxima CS-328]
gi|375324114|emb|CCE20426.1| HNH endonuclease:HNH nuclease [Arthrospira sp. PCC 8005]
gi|406715363|gb|EKD10519.1| HNH endonuclease [Arthrospira platensis C1]
Length = 165
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 102/172 (59%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L EKA+ +E+ + + F +P V+R+RH ++V
Sbjct: 5 LVLNASYEPLNITTWRRAVVLLLKEKAEQVEHNGKYLLP---DFPLPTVIRLRHYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N++ RD +CQYC + + LT+DHV+P SR G WENLV AC +CN +
Sbjct: 62 K---EIPLTRRNILQRDCHSCQYCGYKGDELTVDHVIPRSRQGGDTWENLVTACMRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EA M L P+ P Y L +T ++ G EW++Y+
Sbjct: 119 KGCRTPKEAGMPLRHPPRKP--YSSLYFEVTR------HLKSGMNQEWQKYM 162
>gi|157414133|ref|YP_001484999.1| HNH endonuclease family protein [Prochlorococcus marinus str. MIT
9215]
gi|157388708|gb|ABV51413.1| HNH endonuclease family protein [Prochlorococcus marinus str. MIT
9215]
Length = 185
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 92/140 (65%), Gaps = 6/140 (4%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L KA+ LE D++ + +G +P V+R+ + ++V
Sbjct: 22 LVLNASYEPLNITSWRRAVILMIKGKAESLEE-DKSYSIHSGK-KLPTVIRLLYYVKVPF 79
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R + +L+RKN++ RDN CQYC+ R +L+IDHV+P SRGG WEN+ AC +CN +
Sbjct: 80 R---EVSLTRKNILLRDNNACQYCNYRGSDLSIDHVLPRSRGGTDNWENVTTACLRCNVQ 136
Query: 220 KGKKTLEEANMQLSRVPKAP 239
KG +T EEANM L R P P
Sbjct: 137 KGNRTPEEANMPLKRKPYRP 156
>gi|163848247|ref|YP_001636291.1| HNH endonuclease [Chloroflexus aurantiacus J-10-fl]
gi|222526157|ref|YP_002570628.1| HNH endonuclease [Chloroflexus sp. Y-400-fl]
gi|163669536|gb|ABY35902.1| HNH endonuclease [Chloroflexus aurantiacus J-10-fl]
gi|222450036|gb|ACM54302.1| HNH endonuclease [Chloroflexus sp. Y-400-fl]
Length = 168
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 92/145 (63%), Gaps = 5/145 (3%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQV 158
R LVL+ SY P+ ++ +RA+ L EKA+++E Q + + + ++ +P V+R+ +++
Sbjct: 4 RVLVLNASYEPLQLISVRRALILLLQEKAELVEAAMQQLRAQSVTYSVPLVIRLVRYIRI 63
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSS---RENLTIDHVVPASRGGEWKWENLVAACFK 215
++ R+ SR+ + RD TCQYC R NLT+DHV+P S+GG+ WEN+V AC
Sbjct: 64 PRQLRLP--CSRRAVFARDRETCQYCGQQPGRNNLTMDHVIPRSQGGQTTWENVVTACRD 121
Query: 216 CNSRKGKKTLEEANMQLSRVPKAPK 240
CN RKG +T E+ANM L P+ P+
Sbjct: 122 CNHRKGGRTPEQANMVLLSTPRQPQ 146
>gi|15807399|ref|NP_296130.1| hypothetical protein DR_2409 [Deinococcus radiodurans R1]
gi|6460224|gb|AAF11952.1|AE002071_6 conserved hypothetical protein [Deinococcus radiodurans R1]
Length = 186
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 90/146 (61%), Gaps = 2/146 (1%)
Query: 94 ELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVR 153
+L R LVL+ SY P+ V KRAI L A+VLE + SP+ +P+V+R+R
Sbjct: 20 DLNAPRVLVLNASYEPLQVTSIKRAITLLQYGVAEVLEQSRDVVRSPSTVMSVPSVIRLR 79
Query: 154 HLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAAC 213
++ + + N R+N++ RD+FTCQYC S+++LT+DHV P SRGG+ W+N+V AC
Sbjct: 80 RYVRRPRVGAVPFN--RRNVLRRDHFTCQYCGSQDDLTMDHVHPRSRGGKHGWDNVVTAC 137
Query: 214 FKCNSRKGKKTLEEANMQLSRVPKAP 239
CN RKG T EEA M L P AP
Sbjct: 138 RTCNQRKGNLTPEEAGMPLHVPPHAP 163
>gi|298293278|ref|YP_003695217.1| HNH endonuclease [Starkeya novella DSM 506]
gi|296929789|gb|ADH90598.1| HNH endonuclease [Starkeya novella DSM 506]
Length = 185
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P++V W+ AI F+++ +++EYY++ ++S +P+V+ ++ ++ +
Sbjct: 22 LSYYPLSVWSWQDAIKAVFLDRVNIVEYYERQVSSATFQMRLPSVVSLKTFIRPAR---- 77
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+ +R N+ RD FTCQYC +RE LT DHV+P SRGG+ WEN+VAAC CN RKG
Sbjct: 78 QPAFTRFNVFLRDRFTCQYCDAREELTFDHVIPRSRGGQTTWENVVAACSPCNLRKGGLM 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
EA+M + P P +D+
Sbjct: 138 PAEAHMIPRQRPFQPTVFDL 157
>gi|365891320|ref|ZP_09429753.1| putative HNH endonuclease:HNH nuclease [Bradyrhizobium sp. STM
3809]
gi|365332734|emb|CCE02284.1| putative HNH endonuclease:HNH nuclease [Bradyrhizobium sp. STM
3809]
Length = 185
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 84/135 (62%), Gaps = 4/135 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++EYYD+ I SP+ +P+V+ ++ ++
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIVEYYDRAIRSPSFEIQLPSVVSLKSFVKPTTHPA- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC S ++LT DHV+P S+GG+ WEN+VAAC CN RKG T
Sbjct: 81 ---FTRFNVFLRDRFVCQYCHSGDDLTFDHVIPRSKGGQTTWENVVAACSPCNLRKGNLT 137
Query: 225 LEEANMQLSRVPKAP 239
++A M + P AP
Sbjct: 138 PQQAKMFPKQAPYAP 152
>gi|318042534|ref|ZP_07974490.1| HNH endonuclease family protein [Synechococcus sp. CB0101]
Length = 175
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 94/172 (54%), Gaps = 14/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA + KA+ LE+ P + P V+R+R ++V
Sbjct: 5 LVLNASYEPLNITSWRRATVMVLKGKAEGLEHASDLQLRP--GLHRPTVIRLRQFVRVPF 62
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R L+R+NL RD CQYC S E L+IDHV+P SRGG W+N+ AC +CN
Sbjct: 63 R---ALPLTRRNLFQRDGHRCQYCGSESERLSIDHVMPRSRGGSHSWDNVTTACLRCNVH 119
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T EA M L + P+ P L+ PL A +M R G EW +Y+
Sbjct: 120 KGNRTPREAGMLLLQPPRRP-----LSGPLFEAQRQMAR---GQHSEWAKYV 163
>gi|422294047|gb|EKU21347.1| hnh endonuclease family protein [Nannochloropsis gaditana CCMP526]
Length = 194
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 85/135 (62%), Gaps = 4/135 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ ++++ D++ Y+ T++SP+ IP+V+ ++ ++ KR
Sbjct: 31 LSYYPLSLWPWQDAVKAVYLDRVDIVAEYENTVSSPSTVIRIPSVIVLKDYVKPQKR--- 87
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC S+ LT DHVVP +RGG WEN+VAAC CN RKG K+
Sbjct: 88 -VAFTRFNLFLRDEFQCQYCGSKGELTFDHVVPRARGGITSWENVVAACSPCNLRKGSKS 146
Query: 225 LEEANMQLSRVPKAP 239
L + M L + P+AP
Sbjct: 147 LRRSGMNLRKPPRAP 161
>gi|427740097|ref|YP_007059641.1| restriction endonuclease [Rivularia sp. PCC 7116]
gi|427375138|gb|AFY59094.1| restriction endonuclease [Rivularia sp. PCC 7116]
Length = 165
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 103/172 (59%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA L KA+ +E+ + I S F +P V+R+R+ ++V
Sbjct: 5 LVLNASYEPLNITSWRRAAILLIKGKAERVEHNGKFIYS---DFPLPTVIRLRYYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N+++RD TCQYC + ++LT+DHV+P SR G WEN+V AC +CN +
Sbjct: 62 K---EIPLTRRNILHRDGHTCQYCGYKGDDLTLDHVIPRSRRGGDSWENIVTACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EA M L P+ P Y L ++ ++ G EW++Y+
Sbjct: 119 KGSRTPKEAQMPLHHAPRRP--YSSLYFEVSK------HLKSGLHQEWQKYV 162
>gi|309790081|ref|ZP_07684655.1| HNH endonuclease [Oscillochloris trichoides DG-6]
gi|308227936|gb|EFO81590.1| HNH endonuclease [Oscillochloris trichoides DG6]
Length = 171
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 87/145 (60%), Gaps = 5/145 (3%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQV 158
R LVL+ SY P+ ++ +RAI L EKA+++E Q + + + +P V+R+ +++
Sbjct: 7 RVLVLNASYEPLQLISVRRAIILLLQEKAELIEAAQQQLRALQVTLAVPLVIRLVRYIRI 66
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACFK 215
+R R+ SR+ + RD CQYC R LT+DHV+P S+GG WEN+V AC
Sbjct: 67 PRRLRLP--CSRRGIFARDREMCQYCGEQPGRHQLTMDHVIPRSQGGATTWENVVTACRD 124
Query: 216 CNSRKGKKTLEEANMQLSRVPKAPK 240
CN RKG +T E+A MQL P+ P+
Sbjct: 125 CNHRKGGRTPEQAGMQLLSTPRQPQ 149
>gi|182680007|ref|YP_001834153.1| HNH endonuclease [Beijerinckia indica subsp. indica ATCC 9039]
gi|182635890|gb|ACB96664.1| HNH endonuclease [Beijerinckia indica subsp. indica ATCC 9039]
Length = 189
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 88/140 (62%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ +YD+T+ SP+ +P+V+ ++ VK R
Sbjct: 26 LSYYPLSLWSWQDAIKAVFLDRVNIVSHYDKTVRSPSFEMRLPSVVSLK---TYVKPSR- 81
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD FTCQYC SRE+LT DHV+P S+GG WEN+VAAC CN RKG K
Sbjct: 82 HPAFTRFNVFLRDRFTCQYCGSREDLTFDHVLPRSKGGTTTWENVVAACSCCNLRKGDKL 141
Query: 225 LEEANMQLSRVPKAPKDYDI 244
+EA+M + P P D+
Sbjct: 142 PDEAHMWPASPPYQPTVGDL 161
>gi|428302032|ref|YP_007140338.1| HNH endonuclease [Calothrix sp. PCC 6303]
gi|428238576|gb|AFZ04366.1| HNH endonuclease [Calothrix sp. PCC 6303]
Length = 165
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 102/172 (59%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA L KA+ +E+ + + + F +P V+R+RH ++V
Sbjct: 5 LVLNASYEPLNITSWRRAAVLLIKGKAERVEHNGKYLYA---DFPLPTVIRLRHYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N+++RD +CQYC + + LT+DHV+P SR G WEN+V AC +CN
Sbjct: 62 K---EIPLTRRNILHRDGHSCQYCGYTGDELTLDHVIPRSRRGGDSWENIVTACVRCNVH 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EA+M L P+ P Y L ++ ++ G EW++Y+
Sbjct: 119 KGSRTPQEAHMPLRHAPRRP--YSSLYFEVSK------HLKSGVHTEWQKYV 162
>gi|317968846|ref|ZP_07970236.1| HNH nuclease [Synechococcus sp. CB0205]
Length = 172
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 96/173 (55%), Gaps = 16/173 (9%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+NV W+RA + KA+ LE+ P +P V+R+R ++V
Sbjct: 5 LVLNASYEPLNVTTWRRATVMVLKGKAEGLEHSPGRQLRPG--LGLPTVIRLRQFVRVPF 62
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYC-SSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R L+R+N+ +RD CQYC SS E L+IDHV+P SRGG W+N+ AC +CN
Sbjct: 63 R---PLPLTRRNVFHRDGQRCQYCGSSSERLSIDHVLPRSRGGSHSWDNVTTACLRCNVH 119
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLR-VRKGTPVEWRQYL 271
KG +T +EA+M L P+ PL+ A R + KG +EW +Y+
Sbjct: 120 KGNRTPKEASMPLQSAPRR---------PLSGAVFEAQRQMAKGGHLEWAKYV 163
>gi|443320693|ref|ZP_21049777.1| restriction endonuclease [Gloeocapsa sp. PCC 73106]
gi|442789576|gb|ELR99225.1| restriction endonuclease [Gloeocapsa sp. PCC 73106]
Length = 165
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 100/172 (58%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L KA+ LE+ + I F IP V+R+ + ++V
Sbjct: 5 LVLNASYEPLNITSWRRAVVLLLKGKAERLEHNGKQIYQ---EFPIPTVIRLLYYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N++ RD +CQYC+ + E LT+DHV+P SRGG WENLV AC +CN +
Sbjct: 62 K---EIPLTRRNVLERDRQSCQYCNYKGEQLTLDHVIPRSRGGGDTWENLVTACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EANM L P+ P Y L + R EW++Y+
Sbjct: 119 KGSRTPKEANMSLRSQPRRP--YSSLHFEIAKCT------RGNVNQEWKKYV 162
>gi|456352674|dbj|BAM87119.1| conserved hypothetical protein [Agromonas oligotrophica S58]
Length = 174
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 84/135 (62%), Gaps = 4/135 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++EYYD+ I SP+ +P+V+ ++ + +
Sbjct: 11 LSYYPLSLWSWQDAIKAVFLDRVNIVEYYDRAIRSPSFEIQLPSVVSLKSFV----KPST 66
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC S ++LT DHV+P S+GG+ WEN+VAAC CN RKG T
Sbjct: 67 HPAFTRFNVFLRDRFACQYCHSGDDLTFDHVIPRSKGGQTTWENVVAACSPCNLRKGNLT 126
Query: 225 LEEANMQLSRVPKAP 239
++A M + P AP
Sbjct: 127 PQQAKMFPKQAPYAP 141
>gi|78780005|ref|YP_398117.1| HNH endonuclease family protein [Prochlorococcus marinus str. MIT
9312]
gi|78713504|gb|ABB50681.1| HNH nuclease [Prochlorococcus marinus str. MIT 9312]
Length = 185
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 90/140 (64%), Gaps = 6/140 (4%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L KA+ LE + S + +P V+R+R+ ++V
Sbjct: 22 LVLNASYEPLNITSWRRAVILMIKGKAESLE--EDKSYSIHCGRKLPTVIRLRYYVKVPF 79
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R + +L+RKN++ RDN CQYC+ R +L+IDHV+P SRGG WEN+ AC +CN +
Sbjct: 80 R---EVSLTRKNILLRDNNACQYCNYRGSDLSIDHVLPRSRGGTDNWENVTTACLRCNVQ 136
Query: 220 KGKKTLEEANMQLSRVPKAP 239
KG +T EEAN+ L R P P
Sbjct: 137 KGNRTPEEANIPLKRKPYRP 156
>gi|90422135|ref|YP_530505.1| HNH endonuclease [Rhodopseudomonas palustris BisB18]
gi|90104149|gb|ABD86186.1| HNH endonuclease [Rhodopseudomonas palustris BisB18]
Length = 185
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 88/140 (62%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++E+YDQ ++SP+ +P+V+ ++ + +
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIVEHYDQAVHSPSFEIQLPSVVSLKSFV----KPST 77
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F+CQYC + E+LT DH++P S+GG+ WEN+VAAC CN RKG T
Sbjct: 78 HPAFTRFNVFLRDRFSCQYCGAPEDLTFDHIMPRSKGGQTTWENVVAACSPCNLRKGNMT 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++A M + P AP + +
Sbjct: 138 PQQARMFPRQAPFAPTVHQL 157
>gi|302382212|ref|YP_003818035.1| HNH endonuclease [Brevundimonas subvibrioides ATCC 15264]
gi|302192840|gb|ADL00412.1| HNH endonuclease [Brevundimonas subvibrioides ATCC 15264]
Length = 186
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 88/152 (57%), Gaps = 9/152 (5%)
Query: 98 FRGLVLD-----ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRV 152
F LVL+ +SY P+++ W+ A+ + ++ DV+ YD+ + SP+ IP+V+ +
Sbjct: 11 FPALVLNADFRPLSYYPLSLWPWEEAVKAVYQDRVDVVSVYDKVVRSPSMEMAIPSVIAL 70
Query: 153 RHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAA 212
+ V + R +R N+ RD FTCQYC LT DHV+P SRGG WEN+VAA
Sbjct: 71 K---SYVDQNR-SPAFTRFNVFLRDGFTCQYCGDTAELTFDHVIPRSRGGRTTWENIVAA 126
Query: 213 CFKCNSRKGKKTLEEANMQLSRVPKAPKDYDI 244
C CN +KG +T ++A+M + R P P Y +
Sbjct: 127 CSPCNLKKGGRTPQQAHMPVRRAPHRPNAYQL 158
>gi|434406039|ref|YP_007148924.1| restriction endonuclease [Cylindrospermum stagnale PCC 7417]
gi|428260294|gb|AFZ26244.1| restriction endonuclease [Cylindrospermum stagnale PCC 7417]
Length = 165
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 104/172 (60%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA L KA+ +E+ + + + F +P V+R+R+ ++V
Sbjct: 5 LVLNASYEPLNITSWRRAAVLLIKGKAERIEHNGKFLYA---EFPLPTVIRLRYYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N+++RD TCQYC + + LT+DHV+P SRGG WEN+V AC +CN +
Sbjct: 62 K---EIPLTRRNILHRDGHTCQYCGYTGDELTLDHVLPRSRGGGDSWENIVTACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T EA+M L P+ P Y L ++ +++ G EW++Y+
Sbjct: 119 KGSRTPHEAHMFLRHSPRQP--YSSLYFEVSK------QLKSGLHQEWQKYV 162
>gi|89054457|ref|YP_509908.1| HNH endonuclease [Jannaschia sp. CCS1]
gi|88864006|gb|ABD54883.1| HNH endonuclease [Jannaschia sp. CCS1]
Length = 198
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 89/146 (60%), Gaps = 9/146 (6%)
Query: 100 GLVLDISYRPVNVVC-----WKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRH 154
LVL+ YRP++ + W+ A+ ++++ ++ YD ++SP+ S IP+V+ +R
Sbjct: 25 ALVLNADYRPLSYLPLSLWPWQEAVKAVYLDRVQIVAEYDDFVHSPSTSIRIPSVVVLRD 84
Query: 155 LLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACF 214
++ KR +R NL RD+F+CQYC + +LT DHVVP + GG WEN+VAAC
Sbjct: 85 YVKPQKRV----AFTRFNLFLRDHFSCQYCGATGDLTFDHVVPRASGGVTSWENVVAACS 140
Query: 215 KCNSRKGKKTLEEANMQLSRVPKAPK 240
KCN RKG ++L + + L R P+ P+
Sbjct: 141 KCNLRKGSRSLRHSGLSLRRAPRQPE 166
>gi|407785584|ref|ZP_11132731.1| HNH endonuclease [Celeribacter baekdonensis B30]
gi|407202534|gb|EKE72524.1| HNH endonuclease [Celeribacter baekdonensis B30]
Length = 194
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 84/135 (62%), Gaps = 4/135 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ F+++ D++ YD ++SP+ IP+V+ ++ ++ KR
Sbjct: 31 LSYYPLSLWPWQEAVKAVFLDRVDIVAEYDDYVHSPSCRIKIPSVVVLKDYVKPQKR--- 87
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC SR +LT DHV+P +RGG WEN+VAAC CN +KG K+
Sbjct: 88 -VAFTRFNLFLRDEFCCQYCGSRGDLTFDHVIPRARGGITSWENVVAACSPCNLKKGSKS 146
Query: 225 LEEANMQLSRVPKAP 239
L + M L + P+ P
Sbjct: 147 LRQVGMSLRKPPRPP 161
>gi|325295691|ref|YP_004282205.1| HNH endonuclease [Desulfurobacterium thermolithotrophum DSM 11699]
gi|325066139|gb|ADY74146.1| HNH endonuclease [Desulfurobacterium thermolithotrophum DSM 11699]
Length = 184
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 83/148 (56%), Gaps = 8/148 (5%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT-INSPNGSFYIPAVLRVRHLLQVV 159
LVLD +Y PV++ K+A L+ + K +VL+YY ++SP + P V+R+ LL
Sbjct: 7 LVLDRTYTPVSIFSHKKAFILDLLNKCEVLQYYKSIKLSSPTMDYPAPLVIRIPVLL--- 63
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSS---RENLTIDHVVPASRGGEWKWENLVAACFKC 216
R +R+ + RDNFTC YC N TIDHV+P SRGG W W NLV C +C
Sbjct: 64 -RHWQSPTPTRRAVFIRDNFTCAYCGKIVKDNNATIDHVLPKSRGGTWSWTNLVTCCNEC 122
Query: 217 NSRKGKKTLEEANMQLSRVPKAPKDYDI 244
N +KG + EEA M L PK P + I
Sbjct: 123 NQKKGNRLPEEAGMPLLYKPKRPSSFQI 150
>gi|389693505|ref|ZP_10181599.1| restriction endonuclease [Microvirga sp. WSM3557]
gi|388586891|gb|EIM27184.1| restriction endonuclease [Microvirga sp. WSM3557]
Length = 189
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 85/140 (60%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ CW+ AI F+++ +++ YD+ + SP +P+V+ ++ VK R
Sbjct: 26 LSYYPLSIWCWQDAIKAVFLDRVNIVSEYDKVVRSPTFEIRLPSVISLK---TYVKPSR- 81
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F+CQYC RE+LT DHV+P S+GG+ WEN+VAAC CN +KG K
Sbjct: 82 HPAFTRFNVFLRDRFSCQYCGDREDLTFDHVIPRSKGGQTTWENVVAACAPCNLKKGDKL 141
Query: 225 LEEANMQLSRVPKAPKDYDI 244
E M + P AP +D+
Sbjct: 142 PREVEMWPRQSPFAPTVHDL 161
>gi|85375659|ref|YP_459721.1| HNH endonuclease [Erythrobacter litoralis HTCC2594]
gi|84788742|gb|ABC64924.1| HNH endonuclease family protein [Erythrobacter litoralis HTCC2594]
Length = 213
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 99/183 (54%), Gaps = 24/183 (13%)
Query: 81 GESEEYDSDEEFDELACFRG--------------LVLD-----ISYRPVNVVCWKRAICL 121
GESE + + E + +A FR LVL+ +SY P+++ W+ AI
Sbjct: 8 GESELFKA-ELIERVAAFRSAEEDPTRSLESCPSLVLNADYTPLSYYPLSLWPWQTAIKA 66
Query: 122 EFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTC 181
F+++ D++E YD+ ++SPN IP+V+ +R VK +R NL RD F C
Sbjct: 67 VFLDRVDIIESYDREVHSPNLDMKIPSVIALR---DYVKPSEFPA-FTRFNLFLRDRFNC 122
Query: 182 QYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKD 241
QYC R+NLT DHV P +GG+ WEN+ AC CN +KG +T +EA+M L P P
Sbjct: 123 QYCGGRQNLTFDHVNPRRQGGKTTWENIATACAPCNMKKGGRTPKEAHMHLHTQPIRPTH 182
Query: 242 YDI 244
+ +
Sbjct: 183 WQL 185
>gi|78499551|gb|ABB45802.1| HNH endonuclease [Arthrospira platensis]
Length = 135
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 90/133 (67%), Gaps = 4/133 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVL-EYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
L+L+ Y+P++VV ++++ L F++KA++L ++ + TI++ S+ P V+R+R +V
Sbjct: 6 LILNQDYQPLSVVNVRKSLILLFLDKAELLHDHPEMTISTVTHSYQYPLVIRLRRYARVP 65
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + LSRKN++ RD TCQYC S +LTIDHV+P SRGG WENLV AC CN +
Sbjct: 66 FKNIV---LSRKNIVKRDASTCQYCGSHTDLTIDHVIPKSRGGPDTWENLVTACNSCNHK 122
Query: 220 KGKKTLEEANMQL 232
KG +T +EA M L
Sbjct: 123 KGNRTPKEAEMPL 135
>gi|365878540|ref|ZP_09418012.1| putative HNH endonuclease:HNH nuclease [Bradyrhizobium sp. ORS 375]
gi|365293573|emb|CCD90543.1| putative HNH endonuclease:HNH nuclease [Bradyrhizobium sp. ORS 375]
Length = 185
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 84/135 (62%), Gaps = 4/135 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++EYYD+ I SP+ +P+V+ ++ ++
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIVEYYDRAIRSPSFEIQLPSVVSLKSFVKPTTHPA- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC S ++LT DHV+P S+GG+ WEN+VAAC CN +KG T
Sbjct: 81 ---FTRFNVFLRDRFACQYCHSGDDLTFDHVIPRSKGGQTTWENVVAACSPCNLKKGNLT 137
Query: 225 LEEANMQLSRVPKAP 239
++A M + P AP
Sbjct: 138 PQQAKMFPKQAPYAP 152
>gi|390945117|ref|YP_006408878.1| restriction endonuclease [Belliella baltica DSM 15883]
gi|390418545|gb|AFL86123.1| restriction endonuclease [Belliella baltica DSM 15883]
Length = 168
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 89/149 (59%), Gaps = 4/149 (2%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQ-TINSPNGSFYIPAVLRVRHLLQ 157
R LVL++ + PV VV ++A+ L F+EK L +Y+ TI + + +F PAV+R+
Sbjct: 4 RVLVLNLDHSPVAVVTVQKAMVLTFLEKVSCLSFYESYTIRTVSRTFQYPAVIRLNEYKN 63
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
+ R + L+R NL RD CQYC S++NLTIDHV+P S+GG+ W NL+ AC +CN
Sbjct: 64 IPFRGVL---LNRNNLFKRDGGECQYCGSKKNLTIDHVIPRSKGGKTNWTNLITACHRCN 120
Query: 218 SRKGKKTLEEANMQLSRVPKAPKDYDILA 246
KG K+ E++ M L P P LA
Sbjct: 121 VIKGDKSPEQSGMVLRSKPFKPSLSFFLA 149
>gi|146343281|ref|YP_001208329.1| HNH endonuclease:HNH nuclease [Bradyrhizobium sp. ORS 278]
gi|148252701|ref|YP_001237286.1| HNH endonuclease [Bradyrhizobium sp. BTAi1]
gi|146196087|emb|CAL80114.1| putative HNH endonuclease:HNH nuclease [Bradyrhizobium sp. ORS 278]
gi|146404874|gb|ABQ33380.1| putative HNH endonuclease [Bradyrhizobium sp. BTAi1]
Length = 185
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 84/135 (62%), Gaps = 4/135 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++EYYD+ I SP+ +P+V+ ++ ++
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIVEYYDRAIRSPSFEIQLPSVVSLKSFVKPTTHPA- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC S ++LT DHV+P S+GG+ WEN+VAAC CN +KG T
Sbjct: 81 ---FTRFNVFLRDRFVCQYCHSGDDLTFDHVIPRSKGGQTTWENVVAACSPCNLKKGNLT 137
Query: 225 LEEANMQLSRVPKAP 239
++A M + P AP
Sbjct: 138 PQQAKMFPKQAPYAP 152
>gi|367473211|ref|ZP_09472776.1| conserved hypothetical protein; putative HNH endonuclease
[Bradyrhizobium sp. ORS 285]
gi|365274500|emb|CCD85244.1| conserved hypothetical protein; putative HNH endonuclease
[Bradyrhizobium sp. ORS 285]
Length = 185
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 84/135 (62%), Gaps = 4/135 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++EYYD+ I SP+ +P+V+ ++ + +
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIVEYYDRAIRSPSFEIQLPSVVSLKSFV----KPST 77
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC S ++LT DHV+P S+GG+ WEN+VAAC CN +KG T
Sbjct: 78 HPAFTRFNVFLRDRFACQYCHSGDDLTFDHVIPRSKGGQTTWENVVAACSPCNLKKGNLT 137
Query: 225 LEEANMQLSRVPKAP 239
++A M + P AP
Sbjct: 138 PQQAKMFPKQAPYAP 152
>gi|365895382|ref|ZP_09433497.1| putative HNH endonuclease:HNH nuclease [Bradyrhizobium sp. STM
3843]
gi|365423858|emb|CCE06039.1| putative HNH endonuclease:HNH nuclease [Bradyrhizobium sp. STM
3843]
Length = 185
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 84/135 (62%), Gaps = 4/135 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++EYYD+ I SP+ +P+V+ ++ ++
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIVEYYDRAIRSPSFEIRLPSVVSLKSFVKPTTHPA- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC S ++LT DH++P S+GG+ WEN+VAAC CN RKG T
Sbjct: 81 ---FTRFNVFLRDRFACQYCLSGDDLTFDHIIPRSKGGQTTWENVVAACSPCNLRKGNMT 137
Query: 225 LEEANMQLSRVPKAP 239
++A M + P AP
Sbjct: 138 PQQAKMFPRQTPYAP 152
>gi|85707200|ref|ZP_01038286.1| HNH endonuclease family protein [Roseovarius sp. 217]
gi|85668254|gb|EAQ23129.1| HNH endonuclease family protein [Roseovarius sp. 217]
Length = 179
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 84/136 (61%), Gaps = 4/136 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI + ++ D++ YDQ + SP+ + IP+V+ ++ ++ KR
Sbjct: 16 LSYYPLSLWTWQEAIKAAWSDRVDIVAEYDQWVRSPSTTIRIPSVIVLKDYVKPQKR--- 72
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC R +LT DHVVP + GG WEN+VAAC CN RKG K+
Sbjct: 73 -VAFTRFNLFLRDEFMCQYCGGRGDLTFDHVVPRASGGVTSWENVVAACSPCNLRKGSKS 131
Query: 225 LEEANMQLSRVPKAPK 240
L ++ + L + P+ P+
Sbjct: 132 LRQSGLSLRKPPRMPE 147
>gi|258404539|ref|YP_003197281.1| HNH endonuclease [Desulfohalobium retbaense DSM 5692]
gi|257796766|gb|ACV67703.1| HNH endonuclease [Desulfohalobium retbaense DSM 5692]
Length = 169
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 94/162 (58%), Gaps = 4/162 (2%)
Query: 98 FRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQ 157
R LVL+ +Y ++ + WKRAI L K +VL+Y + S F +PA++R+ +++
Sbjct: 1 MRVLVLNANYTYLHSISWKRAINLYLKGKVEVLQYSTLKVASFGTEFMVPAIVRLVKMVR 60
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYC--SSRENLTIDHVVPASRGGEWKWENLVAACFK 215
+ + ++ L+++N+ RD + CQYC S R++ TIDH++P SRGG+ W N V +C
Sbjct: 61 RIYKGKVP--LNKRNIFLRDGYRCQYCGGSCRDHPTIDHILPKSRGGQTTWTNSVTSCRG 118
Query: 216 CNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRML 257
CN RKG KT EA M L R P P + L I + I+ L
Sbjct: 119 CNQRKGNKTPSEARMPLLRQPSQPTIGEFLHIQNHHSGIQEL 160
>gi|87300883|ref|ZP_01083725.1| HNH endonuclease family protein [Synechococcus sp. WH 5701]
gi|87284754|gb|EAQ76706.1| HNH endonuclease family protein [Synechococcus sp. WH 5701]
Length = 165
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 87/140 (62%), Gaps = 6/140 (4%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA + KA+ LE+ + + G +P+V+R+R ++V
Sbjct: 5 LVLNASYEPLNITSWRRATVMLLKGKAEGLEHDPK--HPIRGEMLLPSVIRLRQFVRVPF 62
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+ + RD +CQYC + E L+IDHV+P SRGG WEN+ AC +CN R
Sbjct: 63 K---QLPLTRRYVFQRDGHSCQYCGYQGEQLSIDHVIPRSRGGTDTWENVTTACLRCNVR 119
Query: 220 KGKKTLEEANMQLSRVPKAP 239
KG +T EA M L+RVP+ P
Sbjct: 120 KGSRTPREAAMPLARVPRRP 139
>gi|255263718|ref|ZP_05343060.1| HNH endonuclease [Thalassiobium sp. R2A62]
gi|255106053|gb|EET48727.1| HNH endonuclease [Thalassiobium sp. R2A62]
Length = 198
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 86/135 (63%), Gaps = 4/135 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI ++++ D++ Y++ ++SP+ IP+V+ ++ ++ KR
Sbjct: 35 LSYYPLSLWPWQDAIKAAWLDRVDIIAEYEEVVHSPSTEIRIPSVVVLKDYVKPQKR--- 91
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F+CQYC +R +LT DHVVP +RGG WEN+VAAC KCN +KG +
Sbjct: 92 -VAFTRFNLFLRDEFSCQYCGARGDLTFDHVVPRARGGVTSWENVVAACSKCNLKKGSQM 150
Query: 225 LEEANMQLSRVPKAP 239
L + M L + P+ P
Sbjct: 151 LSRSGMSLIKPPRQP 165
>gi|409990289|ref|ZP_11273685.1| HNH endonuclease [Arthrospira platensis str. Paraca]
gi|78499549|gb|ABB45801.1| HNH endonuclease [Arthrospira platensis]
gi|291568245|dbj|BAI90517.1| hypothetical protein [Arthrospira platensis NIES-39]
gi|409938846|gb|EKN80114.1| HNH endonuclease [Arthrospira platensis str. Paraca]
Length = 165
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 101/172 (58%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA+ L EKA+ +E+ + + F P V+R+RH ++V
Sbjct: 5 LVLNASYEPLNITTWRRAVVLLLKEKAEQVEHNGRYLLP---DFPFPTVIRLRHYVRVPY 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N++ RD +CQYC + + LT+DHV+P SR G WENLV AC +CN +
Sbjct: 62 K---EIPLTRRNILQRDCHSCQYCGYKGDELTVDHVIPRSRQGGDTWENLVTACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EA M L P+ P Y L +T ++ G EW++Y+
Sbjct: 119 KGCRTPKEAEMPLRHPPRKP--YSSLYFEVTR------HLKSGMNQEWQKYV 162
>gi|148556016|ref|YP_001263598.1| HNH endonuclease [Sphingomonas wittichii RW1]
gi|148501206|gb|ABQ69460.1| HNH endonuclease [Sphingomonas wittichii RW1]
Length = 188
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 86/140 (61%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+E+ D++ +Y++ + SP + +P+V+ +R Q VK+
Sbjct: 25 LSYYPLSLWNWQTAIKAVFLERVDIVSHYEREVRSPTFAMKLPSVIALR---QYVKQSE- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F+CQYC S +LT DHV+P ++GG WEN+ AC CN RKG +T
Sbjct: 81 NPAFTRFNLFLRDRFSCQYCGSLSDLTFDHVIPRAQGGRTTWENVSTACAPCNLRKGGRT 140
Query: 225 LEEANMQLSRVPKAPKDYDI 244
EA M+L P+ P +++
Sbjct: 141 PREAGMRLFETPRRPTSWEL 160
>gi|410696317|gb|AFV75385.1| restriction endonuclease [Thermus oshimai JL-2]
Length = 168
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 95/149 (63%), Gaps = 4/149 (2%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQV 158
R LVL+ +Y + + KR++ L A+++ +++P+ +P+V+R++ L
Sbjct: 7 RVLVLNATYEVLGLASIKRSVLLVLGGGAEMVAESGLYLHTPSTRIPVPSVIRLKRL--- 63
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRE-NLTIDHVVPASRGGEWKWENLVAACFKCN 217
V+R + L+R+N++ RD +TCQYC + +LT+DHV+P SRGG+ WENLVAAC CN
Sbjct: 64 VRRGPSRVPLNRRNVLRRDRYTCQYCGRQGGDLTVDHVLPKSRGGKSTWENLVAACRACN 123
Query: 218 SRKGKKTLEEANMQLSRVPKAPKDYDILA 246
+KG +T EEA M+L + P+APK LA
Sbjct: 124 LKKGDRTPEEAGMRLLKPPRAPKAPLFLA 152
>gi|194333016|ref|YP_002014876.1| HNH endonuclease [Prosthecochloris aestuarii DSM 271]
gi|194310834|gb|ACF45229.1| HNH endonuclease [Prosthecochloris aestuarii DSM 271]
Length = 171
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 90/141 (63%), Gaps = 5/141 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKA-DVLEYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
L+L+ SY P+++ ++AI L F KA V ++ DQ I + S+ +P+++R+ ++V
Sbjct: 9 LILNSSYEPLSICDAQKAIVLLFCGKAVTVAQHPDQVIRTVKESYPLPSIVRLTFFVRVP 68
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENL-TIDHVVPASRGGEWKWENLVAACFKCNS 218
++ + LSRKN+ RDNF CQYC +E L TIDHV+P S+GGE WENL+ AC CN+
Sbjct: 69 YKKLM---LSRKNIFRRDNFQCQYCGRKERLLTIDHVLPRSKGGEESWENLITACSSCNT 125
Query: 219 RKGKKTLEEANMQLSRVPKAP 239
+KG +T EEA M P P
Sbjct: 126 KKGNRTPEEAGMPPLNQPIRP 146
>gi|295690224|ref|YP_003593917.1| HNH endonuclease [Caulobacter segnis ATCC 21756]
gi|295432127|gb|ADG11299.1| HNH endonuclease [Caulobacter segnis ATCC 21756]
Length = 186
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 84/140 (60%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ I F+++ DV+ YDQ ++SP+ +P+V+ ++ Q V + R
Sbjct: 23 LSYYPLSLWPWQEVIKAVFLDRVDVVASYDQVVHSPSFEMRLPSVVALK---QYVPQER- 78
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F+CQYC S E+LT DHV+P SRGG WEN+V AC CN KG +T
Sbjct: 79 PPAFTRFNLFLRDAFSCQYCGSTEDLTFDHVIPRSRGGRTTWENIVTACAPCNLSKGGRT 138
Query: 225 LEEANMQLSRVPKAPKDYDI 244
EA MQ + P +++
Sbjct: 139 PREAGMQPYHHARRPSMHEL 158
>gi|395214376|ref|ZP_10400565.1| HNH endonuclease [Pontibacter sp. BAB1700]
gi|394456334|gb|EJF10648.1| HNH endonuclease [Pontibacter sp. BAB1700]
Length = 170
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 91/146 (62%), Gaps = 4/146 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYD-QTINSPNGSFYIPAVLRVRHLLQVV 159
L+L+ + + V +A L ++EKA+++ + + + + S+ +P+V+R++ + V
Sbjct: 8 LILNQDFSAIAVCTVTKAFLLVYLEKAELISKANGAVLRTVSTSYPVPSVIRLQ---RYV 64
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
K LSR N++ RDNF CQYC + NLT+DH++P SRGGE W+N+V AC +CNSR
Sbjct: 65 KVPYYGIALSRHNVLRRDNFLCQYCGTSRNLTLDHLLPRSRGGETSWQNIVTACSRCNSR 124
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDIL 245
KG +T EEA ++L R P P Y L
Sbjct: 125 KGDRTPEEAGLKLYRHPSRPSLYTFL 150
>gi|383825362|ref|ZP_09980512.1| HNH endonuclease [Mycobacterium xenopi RIVM700367]
gi|383335092|gb|EID13524.1| HNH endonuclease [Mycobacterium xenopi RIVM700367]
Length = 215
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 101/191 (52%), Gaps = 10/191 (5%)
Query: 57 SMNKKKSSKFSVDASLNVSGKGISGESEEYDSDEEF-DELACF----RGLVLDISYRPVN 111
+ KK+ S S A+ ++G D+ + A F R L+L+ +Y P+
Sbjct: 2 AQRKKRRSHRSCAAAAGLTGPAAGSRLRSVDAHPPSPHDGASFWTRRRVLLLNSTYEPLT 61
Query: 112 VVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLS 169
+ +RAI + KADV+ + I+S S P+V+R+R ++V R RI L+
Sbjct: 62 ALPLRRAIIMLICGKADVVHDDPAGPVIHSATRSITAPSVIRLRSYVRVPYRARIP--LT 119
Query: 170 RKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEAN 229
R LM+RD F C YC S+ + T+DHVVP SRGG+ WEN VA C CN RKG K L+E
Sbjct: 120 RAALMHRDRFCCAYCGSKAD-TVDHVVPRSRGGDHSWENCVACCSTCNHRKGDKLLDELG 178
Query: 230 MQLSRVPKAPK 240
L P +PK
Sbjct: 179 WTLRLAPTSPK 189
>gi|392412200|ref|YP_006448807.1| restriction endonuclease [Desulfomonile tiedjei DSM 6799]
gi|390625336|gb|AFM26543.1| restriction endonuclease [Desulfomonile tiedjei DSM 6799]
Length = 171
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 92/153 (60%), Gaps = 7/153 (4%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
+VL+ Y + +V W+RA+ L F K +V++ + I + +F IPAV+R+ ++ +
Sbjct: 8 IVLNAGYEFLGLVSWQRAMGLLFSGKVEVIKESTRVIRTVTRTFRIPAVIRLVKFIRQIY 67
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRE----NLTIDHVVPASRGGEWKWENLVAACFKC 216
RR + SRKN++ RD F CQYC RE +LTIDH++P +GG+ KW N+VA C C
Sbjct: 68 RREVP--FSRKNILTRDAFVCQYCG-REFPSGDLTIDHIIPKVQGGDNKWTNVVACCRAC 124
Query: 217 NSRKGKKTLEEANMQLSRVPKAPKDYDILAIPL 249
N +KG +T +A MQL R P P + + + L
Sbjct: 125 NIKKGGRTPRQAGMQLVRKPFKPTIMEFINLYL 157
>gi|123969268|ref|YP_001010126.1| HNH endonuclease family protein [Prochlorococcus marinus str.
AS9601]
gi|123199378|gb|ABM71019.1| HNH endonuclease family protein [Prochlorococcus marinus str.
AS9601]
Length = 185
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 89/146 (60%), Gaps = 18/146 (12%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYI------PAVLRVRH 154
LVL+ SY P+N+ W+RA+ L KA+ LE + SF I P V+R+R+
Sbjct: 22 LVLNASYEPLNITSWRRAVILMIKGKAESLE--------EDNSFLIHCGRKLPTVIRLRY 73
Query: 155 LLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAAC 213
+++ R + +L+RKN++ RDN CQYC+ R +L+IDHV+P SRGG WEN+ AC
Sbjct: 74 YVKIPFR---EVSLTRKNILLRDNNCCQYCNYRGSDLSIDHVLPRSRGGTDIWENVTTAC 130
Query: 214 FKCNSRKGKKTLEEANMQLSRVPKAP 239
+CN KG +T EEANM L R P P
Sbjct: 131 LRCNVAKGNRTPEEANMPLKRKPYRP 156
>gi|159044236|ref|YP_001533030.1| putative HNH endonuclease [Dinoroseobacter shibae DFL 12]
gi|157911996|gb|ABV93429.1| putative HNH endonuclease [Dinoroseobacter shibae DFL 12]
Length = 198
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 80/135 (59%), Gaps = 4/135 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ F+E+ +L YD + SP IP+V+ ++ ++ KR
Sbjct: 35 LSYYPLSLWTWQEAVKAAFLERVTILAEYDDVVRSPTTEIKIPSVVVLKDYVKPQKR--- 91
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC + +LT DHVVP + GG WEN+VAAC +CN +KG K+
Sbjct: 92 -VAFTRFNLFLRDQFCCQYCGDKGDLTFDHVVPRASGGVTSWENVVAACSRCNLKKGSKS 150
Query: 225 LEEANMQLSRVPKAP 239
L + M L + P+ P
Sbjct: 151 LRASGMSLRQTPRQP 165
>gi|193215204|ref|YP_001996403.1| HNH endonuclease [Chloroherpeton thalassium ATCC 35110]
gi|193088681|gb|ACF13956.1| HNH endonuclease [Chloroherpeton thalassium ATCC 35110]
Length = 167
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 90/143 (62%), Gaps = 5/143 (3%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYY-DQTINSPNGSFYIPAVLRVRHLLQ 157
R LVL+ SY P++V K+AI L F KA ++ Y DQ+I + + F +P+V+R+ +
Sbjct: 4 RVLVLNQSYEPMSVCDAKKAIVLVFAGKAQMVATYPDQSIRAVSVEFPLPSVVRLNFYVA 63
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRE-NLTIDHVVPASRGGEWKWENLVAACFKC 216
V +R + L+RKN++ RDNF CQYC + LTIDH+VP S+GG W NLV AC KC
Sbjct: 64 VPFKRIM---LNRKNILRRDNFECQYCGRTDLPLTIDHIVPKSQGGGDTWNNLVTACTKC 120
Query: 217 NSRKGKKTLEEANMQLSRVPKAP 239
N++K +T E+A M L P P
Sbjct: 121 NNKKANRTPEQAGMPLRSTPVRP 143
>gi|428202522|ref|YP_007081111.1| restriction endonuclease [Pleurocapsa sp. PCC 7327]
gi|427979954|gb|AFY77554.1| restriction endonuclease [Pleurocapsa sp. PCC 7327]
Length = 181
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/144 (43%), Positives = 88/144 (61%), Gaps = 9/144 (6%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTI---NSPNGSFYIPAVLRVRHLLQ 157
+V +Y P++ V +RAICL KA+ +E+ D I SPN +PA +R L+
Sbjct: 17 VVFSKNYLPISRVNIRRAICLLVTGKAEPMEFADGMIFEVRSPNLILEVPAHIR----LK 72
Query: 158 VVKRRRI--KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFK 215
+ R RI +SR+ ++ RD CQYC S + LT+DHV+P S+GG+ W+N+V AC
Sbjct: 73 IHSRERIWKVPPVSRREVLRRDKHQCQYCGSGKRLTLDHVIPRSKGGKHTWDNVVIACEP 132
Query: 216 CNSRKGKKTLEEANMQLSRVPKAP 239
CNSRKG +T +EA M L +PKAP
Sbjct: 133 CNSRKGDRTPQEAGMLLKMIPKAP 156
>gi|89068937|ref|ZP_01156319.1| HNH endonuclease family protein [Oceanicola granulosus HTCC2516]
gi|89045518|gb|EAR51582.1| HNH endonuclease family protein [Oceanicola granulosus HTCC2516]
Length = 194
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 89/140 (63%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI ++++ D++ Y++ + SP+ + IP+V+ ++ ++ KR
Sbjct: 31 LSYYPLSLWPWQEAIKAAWLDRVDIVAEYEEVVRSPSTTIRIPSVVVLKDYVKPQKR--- 87
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC ++ +LT DHVVP +RGG WEN+VAAC +CN +KG K+
Sbjct: 88 -VAFTRFNLFLRDEFCCQYCGAKGDLTFDHVVPRARGGITSWENVVAACARCNLQKGSKS 146
Query: 225 LEEANMQLSRVPKAPKDYDI 244
L ++ + L + P+ P ++
Sbjct: 147 LRQSGLSLRKAPRRPASEEL 166
>gi|91974822|ref|YP_567481.1| HNH endonuclease [Rhodopseudomonas palustris BisB5]
gi|91681278|gb|ABE37580.1| HNH endonuclease [Rhodopseudomonas palustris BisB5]
Length = 185
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 86/140 (61%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ F+++ +++E+YD+ ++SP F +P+V+ ++ + +
Sbjct: 22 LSYYPLSLWSWQDAVKAVFLDRVNIVEHYDRAVHSPTMEFRLPSVVSLKSFV----KPST 77
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC + E+LT DH++P S+GG+ WEN+VAAC CN RKG T
Sbjct: 78 HPAFTRFNVFLRDRFACQYCGAPEDLTFDHIIPRSKGGQTTWENVVAACSPCNLRKGNLT 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
+A M + P AP + +
Sbjct: 138 PIQAKMFPRQTPFAPTVHHL 157
>gi|219847852|ref|YP_002462285.1| HNH endonuclease [Chloroflexus aggregans DSM 9485]
gi|219542111|gb|ACL23849.1| HNH endonuclease [Chloroflexus aggregans DSM 9485]
Length = 174
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 91/145 (62%), Gaps = 5/145 (3%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQV 158
R LVL+ SY P+ ++ +RA+ L EKA+++E Q + + + ++ +P V+R+ +++
Sbjct: 10 RVLVLNASYEPLQLISVRRALILLLQEKAELVEAAMQQLRAQSVTYSVPLVIRLVRYIRI 69
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACFK 215
++ R+ SR+ + RD TCQYC R LT+DHV+P S+GG+ WEN+V AC
Sbjct: 70 PRQLRLP--CSRRGVFARDRETCQYCGKQPGRAYLTMDHVIPRSQGGQTTWENVVTACRD 127
Query: 216 CNSRKGKKTLEEANMQLSRVPKAPK 240
CN RKG +T E+ANM L P+ P+
Sbjct: 128 CNHRKGGRTPEQANMVLLSTPRQPQ 152
>gi|452825842|gb|EME32837.1| HNH endonuclease family protein [Galdieria sulphuraria]
Length = 303
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 95/156 (60%), Gaps = 12/156 (7%)
Query: 98 FRGLVLD-----ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRV 152
F LVL+ +SY P+++ W I +EK VLE Y++TI SP+ S +P+V+ +
Sbjct: 128 FPTLVLNADFQPVSYYPLSLWPWYETIKAVLLEKVVVLETYEKTIRSPSLSLKLPSVVAL 187
Query: 153 RHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRE---NLTIDHVVPASRGGEWKWENL 209
+ ++ R+ I +R N+ RD+F CQYC R +L+ DH+VP S+GG W N+
Sbjct: 188 KEFRRMTGRQPI---FTRFNVFLRDDFACQYCGKRYRSVDLSFDHIVPRSKGGHSCWTNV 244
Query: 210 VAACFKCNSRKGKKTLEEA-NMQLSRVPKAPKDYDI 244
V ACF+CN +KG + +EE +M+L R P++P Y++
Sbjct: 245 VTACFQCNFKKGNRLVEETKDMRLLRYPRSPTFYEL 280
>gi|310816112|ref|YP_003964076.1| HNH endonuclease family protein [Ketogulonicigenium vulgare Y25]
gi|385233618|ref|YP_005794960.1| HNH endonuclease family protein [Ketogulonicigenium vulgare
WSH-001]
gi|308754847|gb|ADO42776.1| HNH endonuclease family protein [Ketogulonicigenium vulgare Y25]
gi|343462529|gb|AEM40964.1| HNH endonuclease family protein [Ketogulonicigenium vulgare
WSH-001]
Length = 199
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 87/143 (60%), Gaps = 4/143 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ ME+ ++ YD I+SP+ S IP+V+ ++ ++ R+R+
Sbjct: 36 LSYYPLSLWPWQEAVKAAVMERISIVAEYDTVIHSPSRSIRIPSVVVLKDYVK--PRKRV 93
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC + ++LT DHVVP RGG+ W N+VAAC CN KG ++
Sbjct: 94 A--FTRFNLFLRDGFCCQYCGATKDLTFDHVVPRMRGGKTSWTNVVAACQSCNLHKGSRS 151
Query: 225 LEEANMQLSRVPKAPKDYDILAI 247
L +A MQL R + P ++ +
Sbjct: 152 LRQAGMQLMRPAREPTTSELQGV 174
>gi|452751447|ref|ZP_21951193.1| HNH endonuclease family protein [alpha proteobacterium JLT2015]
gi|451961597|gb|EMD84007.1| HNH endonuclease family protein [alpha proteobacterium JLT2015]
Length = 214
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 97/177 (54%), Gaps = 10/177 (5%)
Query: 75 SGKGISGESEEYDSDEEFDELACFRGLVLD-----ISYRPVNVVCWKRAICLEFMEKADV 129
+G G S + S E LA LVL+ +SY P+++ W+ AI F+++ V
Sbjct: 17 TGDGRSAGGRD-GSAEASQALAACPALVLNADYTPLSYYPLSLWAWQTAIKAVFLDRVAV 75
Query: 130 LEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSREN 189
+ YD+ ++SP+ +P+V+ +R ++ +R NL RD F+CQYC ++
Sbjct: 76 VAEYDRRVHSPSFEMRLPSVIALREYVKPA----THPAFTRFNLFLRDRFSCQYCGRTDD 131
Query: 190 LTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILA 246
LT DHV+P + GG WEN+ AC CN KG +T +EA+M L VP+ P +++ A
Sbjct: 132 LTFDHVIPRAYGGRTTWENVATACAPCNLAKGGRTPKEAHMDLYTVPQRPTTHELQA 188
>gi|402771107|ref|YP_006590644.1| HNH endonuclease [Methylocystis sp. SC2]
gi|401773127|emb|CCJ05993.1| HNH endonuclease [Methylocystis sp. SC2]
Length = 172
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 86/140 (61%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ YD+T+ SP+ +P+V+ ++ ++ +
Sbjct: 9 LSYYPLSLWGWQDAIKAVFLDRVNIVSEYDKTVKSPSFEMRLPSVVSLKEYVRPTR---- 64
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+ +R N+ RD FTCQYC E LT DHV+P S+GG WEN+VAAC CN RKG +
Sbjct: 65 QPAFTRFNVFLRDRFTCQYCGEHEELTFDHVIPRSKGGATTWENVVAACSPCNLRKGDRL 124
Query: 225 LEEANMQLSRVPKAPKDYDI 244
+EA+M ++ P P D+
Sbjct: 125 PKEAHMSPAQAPFQPSVADL 144
>gi|389879032|ref|YP_006372597.1| HNH endonuclease family protein [Tistrella mobilis KA081020-065]
gi|388529816|gb|AFK55013.1| HNH endonuclease family protein [Tistrella mobilis KA081020-065]
Length = 232
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 82/138 (59%), Gaps = 7/138 (5%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ ++L YD ++SP +P+V+ +R + V +R
Sbjct: 20 LSYFPLSLWSWQDAIKAVFLDRVNILSEYDSVVHSPRLEMRLPSVISLRSYVPVNRR--- 76
Query: 165 KNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
+R N+ RD F CQYC R E LT DHVVP +RGG W+N+V AC CN+ KG
Sbjct: 77 -PAFTRFNVFLRDRFRCQYCGRRFATEELTFDHVVPRARGGTTTWQNVVTACTACNTAKG 135
Query: 222 KKTLEEANMQLSRVPKAP 239
+T E+ + L VPKAP
Sbjct: 136 ARTPEQCGLTLRSVPKAP 153
>gi|113475274|ref|YP_721335.1| HNH endonuclease [Trichodesmium erythraeum IMS101]
gi|110166322|gb|ABG50862.1| HNH endonuclease [Trichodesmium erythraeum IMS101]
Length = 167
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 100/172 (58%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RAI L KA+ +E+ + +P V+R+R+ ++V
Sbjct: 7 LVLNASYEPLNITSWRRAIVLLLKGKAEQIEHKGIYLLP---DIPLPTVIRLRYYIRVPY 63
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ L+R+N+ +RD +CQYC ++LT+DHV+P SRGG WENLV AC +CN +
Sbjct: 64 K---DIPLTRRNVFHRDGHSCQYCGYMGDDLTLDHVIPRSRGGGDTWENLVTACVRCNVQ 120
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EANM L P+ P+ L LT V+ G EW++Y+
Sbjct: 121 KGSRTPKEANMILDCPPRKPRSG--LYFELTK------HVKSGMNKEWQKYV 164
>gi|383643665|ref|ZP_09956071.1| HNH endonuclease [Sphingomonas elodea ATCC 31461]
Length = 188
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 84/140 (60%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P++V W+ AI F+E+ DV+ YY++ + SP+ +P+V+ ++ Q VK +
Sbjct: 25 LSYYPLSVWPWQTAIKAIFLERVDVVSYYEREVRSPSAVLKLPSVIALK---QYVKPSQF 81
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC S +LT DHV+P ++GG WEN+ AC CN +KG +T
Sbjct: 82 PA-FTRFNLFLRDKFACQYCGSHRDLTFDHVIPRAQGGRTTWENVATACAPCNLKKGGRT 140
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++A+M L P P + +
Sbjct: 141 PQQASMPLHIHPIRPTSWQL 160
>gi|254467251|ref|ZP_05080662.1| HNH endonuclease [Rhodobacterales bacterium Y4I]
gi|206688159|gb|EDZ48641.1| HNH endonuclease [Rhodobacterales bacterium Y4I]
Length = 194
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 83/135 (61%), Gaps = 4/135 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ ++++ ++ YD+ ++SP+ IP+V+ ++ ++ KR
Sbjct: 31 LSYYPLSLWTWQDAVKAAWLDRVAIVAEYDEVVHSPSTEIRIPSVVVLKDYVKPQKR--- 87
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC S+ +LT DHVVP + GG WEN+VAAC CN RKG K+
Sbjct: 88 -VAFTRFNLFLRDEFRCQYCGSKGDLTFDHVVPRASGGVTSWENVVAACSPCNLRKGSKS 146
Query: 225 LEEANMQLSRVPKAP 239
L A M L + P+ P
Sbjct: 147 LHRAGMSLRKPPRRP 161
>gi|167647163|ref|YP_001684826.1| HNH endonuclease [Caulobacter sp. K31]
gi|167349593|gb|ABZ72328.1| HNH endonuclease [Caulobacter sp. K31]
Length = 186
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 82/140 (58%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ I F+E+ DV+ YD ++SP+ +P+V+ ++ Q V + R
Sbjct: 23 LSYYPLSLWPWQEVIKAVFLERVDVVSTYDHVVHSPSFEMKLPSVVSLK---QYVPQDR- 78
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F+CQYC S ++LT DHV+P SRGG WEN+V AC CN KG +T
Sbjct: 79 PPAFTRFNLFLRDGFSCQYCGSPDDLTFDHVIPRSRGGRTTWENIVTACAPCNLHKGGRT 138
Query: 225 LEEANMQLSRVPKAPKDYDI 244
EA M + P +++
Sbjct: 139 PREAGMHPFHTARRPSMHEL 158
>gi|118619002|ref|YP_907334.1| hypothetical protein MUL_3745 [Mycobacterium ulcerans Agy99]
gi|118571112|gb|ABL05863.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length = 213
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 110/220 (50%), Gaps = 18/220 (8%)
Query: 57 SMNKKKSSKFSVDASLNVSGKGISGESEEYDSDEEFDELACF---RGLVLDISYRPVNVV 113
+ KK+ + A+ N++G S + + + + R L+L+ +Y P+ +
Sbjct: 2 AQGKKRRGHRNHGAAANMTGTASCLHSVDTHPPNRHETASIWSRRRVLLLNSTYEPLTAL 61
Query: 114 CWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRK 171
+RAI + KADV+ + I+S + +P+V+++R ++V R R+ ++R
Sbjct: 62 PMRRAIVMVICGKADVVHDDPAGPVIHSATQTIVVPSVIQLRTYVRVPYRARVP--MTRA 119
Query: 172 NLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQ 231
LM+RD F C YC ++ + T+DHVVP SRGGE WEN VA C CN RKG K L E
Sbjct: 120 ALMHRDRFCCAYCGAKAD-TVDHVVPRSRGGEHSWENCVACCSACNHRKGDKLLTELGWS 178
Query: 232 LSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
L R P +P T R+L K W +YL
Sbjct: 179 LRRTP----------LPPTGQHWRLLSTIKELDPSWARYL 208
>gi|92118950|ref|YP_578679.1| HNH endonuclease [Nitrobacter hamburgensis X14]
gi|91801844|gb|ABE64219.1| HNH endonuclease [Nitrobacter hamburgensis X14]
Length = 185
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 86/140 (61%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+E+ +++E+YD+ + SP+ +P+V+ ++ + +
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLERVNIVEHYDRAVRSPSFEIQLPSVVSLKSFV----KPST 77
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC++ E+LT DH++P S+GG+ W+N+VAAC CN RKG T
Sbjct: 78 HPAFTRFNVFLRDRFMCQYCTASEDLTFDHIIPRSKGGQTTWDNVVAACSPCNLRKGNLT 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
+A M + P AP + +
Sbjct: 138 PRQAGMFPRQAPFAPTVHQL 157
>gi|83942568|ref|ZP_00955029.1| HNH endonuclease family protein [Sulfitobacter sp. EE-36]
gi|83953787|ref|ZP_00962508.1| HNH endonuclease family protein [Sulfitobacter sp. NAS-14.1]
gi|83841732|gb|EAP80901.1| HNH endonuclease family protein [Sulfitobacter sp. NAS-14.1]
gi|83846661|gb|EAP84537.1| HNH endonuclease family protein [Sulfitobacter sp. EE-36]
Length = 194
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 86/140 (61%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ +++++ D++ YD ++SP+ IP+V+ ++ ++ KR
Sbjct: 31 LSYYPLSLWPWQEAVKAKWLDRVDIVAEYDDYVHSPSMQIRIPSVVVLKDYVKPQKRV-- 88
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC +R +LT DHVVP + GG W+N+VAAC CN +KG K
Sbjct: 89 --AFTRFNLFLRDEFCCQYCGARGDLTFDHVVPRAAGGITSWQNVVAACSPCNLKKGSKA 146
Query: 225 LEEANMQLSRVPKAPKDYDI 244
L + QL + P+ P+ D+
Sbjct: 147 LHQTGFQLRKPPRQPQAEDL 166
>gi|115522824|ref|YP_779735.1| HNH endonuclease [Rhodopseudomonas palustris BisA53]
gi|115516771|gb|ABJ04755.1| HNH endonuclease [Rhodopseudomonas palustris BisA53]
Length = 185
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 86/140 (61%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++E+YD+ ++SP+ +P+V+ ++ ++
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIVEFYDRAVHSPSFEMQLPSVVSLKSFVKPTTHPA- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC + E+LT DH++P S+GG+ WEN+VAAC CN RKG T
Sbjct: 81 ---FTRFNVFLRDRFVCQYCGAPEDLTFDHIMPRSKGGQTTWENVVAACSPCNLRKGNLT 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
+A M + P AP + +
Sbjct: 138 PHQAKMFPRQSPFAPTVHQL 157
>gi|383822324|ref|ZP_09977552.1| restriction endonuclease [Mycobacterium phlei RIVM601174]
gi|383331884|gb|EID10379.1| restriction endonuclease [Mycobacterium phlei RIVM601174]
Length = 217
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 85/144 (59%), Gaps = 5/144 (3%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLL 156
R L+L+ +Y P+ + +RA+ + KADV+ + I+S S +P+V+R+R +
Sbjct: 51 RVLLLNSTYEPLTALTMRRAVIMLLCGKADVVHDDPNGPVIHSATHSIVVPSVIRLRTYV 110
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R R+ ++R LM+RD F C YC S+ + T+DHVVP SRGGE WEN VAAC C
Sbjct: 111 RVPYRARVP--MTRAALMHRDRFRCAYCGSKAD-TVDHVVPRSRGGEHSWENCVAACSSC 167
Query: 217 NSRKGKKTLEEANMQLSRVPKAPK 240
N RK + L E L VP PK
Sbjct: 168 NHRKADRLLAELGWTLRTVPTPPK 191
>gi|251770822|gb|EES51410.1| HNH endonuclease [Leptospirillum ferrodiazotrophum]
Length = 172
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 97/178 (54%), Gaps = 16/178 (8%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQV 158
R L+L+ SY P+ VV W+RA+ L F K +V+E Y + I S S +PAV+R+ ++
Sbjct: 3 RTLLLNASYEPLKVVPWQRAVHLFFQGKVEVVESYGRDIRSARLSMKVPAVVRLYRMVLF 62
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACFK 215
RR+ SR+ + RD ++CQYC + E LT DHV+P ++GG WEN+V AC
Sbjct: 63 HHTRRLVK-FSRETIFARDRYSCQYCGQTFAPEFLTFDHVIPVAQGGTKTWENIVTACRP 121
Query: 216 CNSRKGKKTLEEANMQL-SRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVE-WRQYL 271
CN RK T E+A M L RV + P S AI ++ G P + W YL
Sbjct: 122 CNHRKSGMTPEQAGMILRGRVSR----------PHWSPAIMVMMTVSGEPPKLWEDYL 169
>gi|328951144|ref|YP_004368479.1| HNH endonuclease [Marinithermus hydrothermalis DSM 14884]
gi|328451468|gb|AEB12369.1| HNH endonuclease [Marinithermus hydrothermalis DSM 14884]
Length = 170
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQV 158
R LVL+ Y P+ + KR + L A+V+E + +P+ + +P+V+R++ ++
Sbjct: 7 RILVLNAGYEPLGLTSIKRGVILVMNGTAEVVEDSGAFLRTPSRPYPVPSVIRLK---RM 63
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
V+R + LSR+N+ RD TCQYC + LT+DHV+P SRGG W+NLV AC CN
Sbjct: 64 VRRPPGRLTLSRRNIFRRDRHTCQYCGRTGGELTVDHVIPKSRGGRTSWDNLVTACRSCN 123
Query: 218 SRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
++K +T EEA M+L P+AP + L L P WR +L
Sbjct: 124 TKKRNRTPEEAGMRLLSRPRAPHFAEFLVFHLPEV-----------PESWRVFL 166
>gi|422936286|ref|YP_007006139.1| HNH endonuclease [Cyanophage S-TIM5]
gi|374716566|gb|AEZ65726.1| HNH endonuclease [Cyanophage S-TIM5]
Length = 164
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 91/180 (50%), Gaps = 27/180 (15%)
Query: 91 EFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVL 150
E D LA + LVL+ SY P+N+ WKRA L EKA V+ V+
Sbjct: 8 ELDSLAREQILVLNASYEPINITSWKRAFVLLLKEKAQVVS---------------QKVI 52
Query: 151 RVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLV 210
R+ + +++ + ++ SR + RD CQYC S LTIDHVVP S+GG W+NLV
Sbjct: 53 RLTNFIKIPFNKMMRAKPSRNAIYTRDGHKCQYCGSTRKLTIDHVVPKSKGGSDDWDNLV 112
Query: 211 AACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQY 270
AC CN +K K LE++ ++L+R P P+ + L I T EW++Y
Sbjct: 113 VACSSCNIKKANKMLEQSGLKLARKPTRPRTHLDLTISQTKCE------------EWKEY 160
>gi|418050820|ref|ZP_12688906.1| HNH endonuclease [Mycobacterium rhodesiae JS60]
gi|353188444|gb|EHB53965.1| HNH endonuclease [Mycobacterium rhodesiae JS60]
Length = 210
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 85/144 (59%), Gaps = 5/144 (3%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLL 156
R L+L+ +Y P+ + +RA+ + KADV+ + I+S + +P+V+R+R +
Sbjct: 44 RVLLLNSTYEPLTALPMRRAVIMLLCGKADVVHDDPAGPVIHSATRAIVVPSVIRLRSFV 103
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R RI ++R LM+RD F C YC S+ + T+DHVVP SRGGE WEN VAAC C
Sbjct: 104 RVPYRARIP--MTRAALMHRDRFRCAYCGSKAD-TVDHVVPRSRGGEHSWENCVAACAGC 160
Query: 217 NSRKGKKTLEEANMQLSRVPKAPK 240
N RK K L E L VP PK
Sbjct: 161 NHRKADKLLSELGWTLRLVPTPPK 184
>gi|430005326|emb|CCF21127.1| putative HNH endonuclease:HNH nuclease [Rhizobium sp.]
Length = 185
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 86/140 (61%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ Y+Q+++SP+ S +P+V+ ++ +Q +
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIIAEYEQSVSSPSFSMRLPSVVSLKTYVQPTRHPA- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC SR+ LT DHV+P + GG+ WEN+VAAC CN RKG K
Sbjct: 81 ---FTRFNVFLRDRFECQYCGSRDELTFDHVIPRAHGGQTTWENVVAACSPCNLRKGSKL 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++A M + P P D+
Sbjct: 138 PKQAGMFPHQKPYPPTVQDL 157
>gi|374851178|dbj|BAL54146.1| HNH endonuclease [uncultured Acidobacteria bacterium]
Length = 173
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 84/141 (59%), Gaps = 6/141 (4%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ +Y P+NV +RAI L A E + + S + IP+V+R+ + V
Sbjct: 10 LVLNSTYEPINVTTARRAIVLILKGTARPEEVTSRIVRSAHVVIPIPSVIRLLEYVHVPF 69
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCN 217
R+ LSRKN++ RD +TCQYC R LT+DHV+P S+GG W+N+VA C +CN
Sbjct: 70 ERK---ELSRKNVLLRDGYTCQYCGRRFPSSELTVDHVIPRSKGGRTSWDNVVACCRRCN 126
Query: 218 SRKGKKTLEEANMQLSRVPKA 238
RKG +T EEA M L + P+A
Sbjct: 127 VRKGNRTPEEAGMTLLKHPRA 147
>gi|126735707|ref|ZP_01751452.1| HNH endonuclease family protein [Roseobacter sp. CCS2]
gi|126714894|gb|EBA11760.1| HNH endonuclease family protein [Roseobacter sp. CCS2]
Length = 195
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 93/158 (58%), Gaps = 9/158 (5%)
Query: 87 DSDEEFDELACFRGLVLD-----ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPN 141
D E L + LVL+ +SY P+++ W+ A+ ++++ D++ YD+ + SP+
Sbjct: 9 DFVREPGALKHYPALVLNADYRPLSYYPLSLWPWQEAVKAAWLDRVDIVSEYDEVVRSPS 68
Query: 142 GSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRG 201
IP+V+ +L+ R + + +R NL RD F CQYC +R +LT DHVVP + G
Sbjct: 69 TVIKIPSVV----VLKDYVRPQKQVAFTRFNLFLRDEFCCQYCGARGDLTFDHVVPRASG 124
Query: 202 GEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
G WEN+VAAC CN RKG ++L+++ M L + P+ P
Sbjct: 125 GITSWENVVAACSPCNLRKGSRSLKQSGMSLQKPPRRP 162
>gi|357976341|ref|ZP_09140312.1| HNH endonuclease [Sphingomonas sp. KC8]
Length = 188
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 84/140 (60%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+E+ D++ YY + ++SP+ + +P+V+ +R + R
Sbjct: 25 LSYYPLSLWSWQTAIKAVFLERVDIVAYYQREVHSPSFAMQLPSVIALRQYV----RPSQ 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD FTCQYC + +LT DHV+P ++GG WEN+ AC CN +KG +T
Sbjct: 81 HPAFTRFNLFLRDRFTCQYCGTGNDLTFDHVIPRAQGGRTTWENVSTACAPCNLKKGGRT 140
Query: 225 LEEANMQLSRVPKAPKDYDI 244
+A+M L+ P P + +
Sbjct: 141 PRQAHMALAEEPIRPTTWQL 160
>gi|316932026|ref|YP_004107008.1| HNH endonuclease [Rhodopseudomonas palustris DX-1]
gi|315599740|gb|ADU42275.1| HNH endonuclease [Rhodopseudomonas palustris DX-1]
Length = 185
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ F+++ +++ +YD+ ++SPN F +P+V+ ++ ++
Sbjct: 22 LSYYPLSLWSWQDAVKAVFLDRVNIVAHYDRAVHSPNLDFQLPSVVSLKSFVKPTTHPA- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC + ++LT DH++P S+GG+ WEN+VAAC CN RKG T
Sbjct: 81 ---FTRFNVFLRDRFVCQYCGAPDDLTFDHIIPRSKGGQTTWENVVAACSPCNLRKGNLT 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
E+A M + AP +++
Sbjct: 138 PEQARMFPRQTAFAPTVHEL 157
>gi|338708579|ref|YP_004662780.1| HNH endonuclease [Zymomonas mobilis subsp. pomaceae ATCC 29192]
gi|336295383|gb|AEI38490.1| HNH endonuclease [Zymomonas mobilis subsp. pomaceae ATCC 29192]
Length = 192
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 88/140 (62%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ F+E+ D++E Y + I+S + +P+V+ ++ + RR
Sbjct: 29 LSYFPLSIWSWQEAVKAVFLERVDIVEVYQREISSAHFKMRLPSVIALKRYV----RRSQ 84
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD+F CQYC S +LT DHV+P ++GG W+N+VAAC CN +KG +T
Sbjct: 85 FPPFTRFNLFLRDHFRCQYCGSSHDLTFDHVIPRAQGGRTTWDNVVAACSPCNLKKGGRT 144
Query: 225 LEEANMQLSRVPKAPKDYDI 244
E+A++ L+ +P P ++ +
Sbjct: 145 PEQADLFLNIIPHQPTNWQL 164
>gi|86138277|ref|ZP_01056851.1| HNH endonuclease family protein [Roseobacter sp. MED193]
gi|85824802|gb|EAQ45003.1| HNH endonuclease family protein [Roseobacter sp. MED193]
Length = 194
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 82/135 (60%), Gaps = 4/135 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ ++++ D+L YD+ ++SP+ IP+V+ ++ ++ KR
Sbjct: 31 LSYYPLSLWSWQDAVKAAWLDRVDILAEYDEVVHSPSTQIRIPSVVVLKDYVKPQKR--- 87
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC +R +LT DHVVP + GG WEN+VAAC CN +KG K
Sbjct: 88 -VAFTRFNLFLRDEFCCQYCGARGDLTFDHVVPRAAGGITSWENVVAACSPCNLKKGSKP 146
Query: 225 LEEANMQLSRVPKAP 239
L M L + P+ P
Sbjct: 147 LHMLPMSLRKAPRRP 161
>gi|372280273|ref|ZP_09516309.1| HNH endonuclease [Oceanicola sp. S124]
Length = 185
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 81/135 (60%), Gaps = 4/135 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI ++ + D++ YD + SP+ IP+V+ ++ ++ KR
Sbjct: 22 LSYYPLSLWPWQEAIKAVWLNRVDIVAEYDHWVRSPSTEIRIPSVVVLKDYVKPQKR--- 78
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC ++ +LT DHVVP + GG WEN+VAAC CN RKG K+
Sbjct: 79 -VAFTRFNLFLRDEFACQYCGAKGDLTFDHVVPRASGGITSWENVVAACAPCNLRKGSKS 137
Query: 225 LEEANMQLSRVPKAP 239
L A M L + P+ P
Sbjct: 138 LRHAGMSLRKPPRPP 152
>gi|149918772|ref|ZP_01907259.1| HNH endonuclease domain protein [Plesiocystis pacifica SIR-1]
gi|149820373|gb|EDM79789.1| HNH endonuclease domain protein [Plesiocystis pacifica SIR-1]
Length = 168
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 86/142 (60%), Gaps = 6/142 (4%)
Query: 102 VLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKR 161
+LD Y+P+ V+ W+RAIC+ F+ K +++ + + + + + + PAV+R LL +
Sbjct: 1 MLDQGYQPLRVIPWQRAICMNFLGKVELVAAHARPVRTVSRDYPAPAVVR---LLGPYRP 57
Query: 162 RRIKNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
++ SR+ + RD TCQYC R LT+DHV+P RGG WEN+V++C CN
Sbjct: 58 QQYIVRFSRQGVHVRDRHTCQYCGVRLPRRELTLDHVIPRHRGGPTNWENIVSSCSPCNL 117
Query: 219 RKGKKTLEEANMQLSRVPKAPK 240
+KG +T EEA M L+ P+ P+
Sbjct: 118 KKGGRTPEEAGMHLASEPRRPR 139
>gi|222149943|ref|YP_002550900.1| hypothetical protein Avi_4001 [Agrobacterium vitis S4]
gi|221736925|gb|ACM37888.1| conserved hypothetical protein [Agrobacterium vitis S4]
Length = 185
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 86/140 (61%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ YD ++ SP+ S +P+V+ ++ +Q +
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIIAEYDHSVCSPSFSMRLPSVVSLKTYVQPTRNPA- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC S ++LT DHV+P + GGE W+N+VAAC CN RKG K
Sbjct: 81 ---FTRFNVFLRDKFQCQYCGSPDDLTFDHVIPRAHGGETTWQNVVAACSPCNLRKGSKL 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++ANM ++ P P D+
Sbjct: 138 PKQANMFPAQKPYQPSVQDL 157
>gi|313674189|ref|YP_004052185.1| hnh endonuclease [Marivirga tractuosa DSM 4126]
gi|312940887|gb|ADR20077.1| HNH endonuclease [Marivirga tractuosa DSM 4126]
Length = 173
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 92/142 (64%), Gaps = 4/142 (2%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYD-QTINSPNGSFYIPAVLRVRHLLQ 157
R LVL+ Y PV V +A L F++KA+++E + + + S + SF P+V+R+ + +
Sbjct: 7 RALVLNQDYTPVTVCSIPKAFLLLFLQKAELIEKDEARKLRSVDRSFPFPSVIRLTNYVT 66
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
+ + + L+R+N+ RD CQYC + ++LT+DH++P S+GG+ KW NLV AC +CN
Sbjct: 67 MPYKGVM---LTRQNVFKRDGHECQYCGTSKDLTLDHLIPRSKGGKSKWTNLVTACKRCN 123
Query: 218 SRKGKKTLEEANMQLSRVPKAP 239
+RKG T EE++++L R P P
Sbjct: 124 ARKGNNTPEESDLKLKRPPFKP 145
>gi|270307902|ref|YP_003329960.1| restriction endonuclease [Dehalococcoides sp. VS]
gi|270153794|gb|ACZ61632.1| restriction endonuclease [Dehalococcoides sp. VS]
Length = 176
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 95/172 (55%), Gaps = 13/172 (7%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ Y+P+NV +RA+ L + KA++LE +S F +P+V+R L ++K
Sbjct: 7 LVLNQDYQPLNVCHVRRAVLLIYQSKAEMLENGSGFWHSEKDHFALPSVIR---LSCLIK 63
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRE-NLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
++ L+R + RD TCQYC R+ LTIDHV P +GG WEN+V AC CN
Sbjct: 64 HPPLRPKLNRAEIFSRDKHTCQYCGRRDLELTIDHVNPKHQGGPHVWENVVTACLHCNRH 123
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
K +T E+A+M+L P P+ ++P ++ +IR EWR YL
Sbjct: 124 KAGRTPEQAHMKLMSTPGVPQYRYGYSLPRSNGSIRH---------EWRPYL 166
>gi|332187299|ref|ZP_08389038.1| HNH endonuclease family protein [Sphingomonas sp. S17]
gi|332012720|gb|EGI54786.1| HNH endonuclease family protein [Sphingomonas sp. S17]
Length = 188
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 85/140 (60%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P++V W+ A+ F+++ D++ +Y++ + SP +P+V+ ++ Q VK +
Sbjct: 25 LSYYPLSVWPWQTAVKAVFLDRVDIVAHYEREVRSPTAKVKLPSVIALK---QFVKPSQF 81
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F+CQYC S +LT DHV+P ++GG WEN+V AC CN +KG +T
Sbjct: 82 PA-FTRFNLFLRDRFSCQYCGSHRDLTFDHVIPRAQGGRTTWENVVTACAPCNLKKGGRT 140
Query: 225 LEEANMQLSRVPKAPKDYDI 244
+ANM L P P ++ +
Sbjct: 141 PRQANMPLHIEPIRPTNWHL 160
>gi|386858049|ref|YP_006262226.1| HNH endonuclease [Deinococcus gobiensis I-0]
gi|380001578|gb|AFD26768.1| HNH endonuclease [Deinococcus gobiensis I-0]
Length = 160
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 87/138 (63%), Gaps = 2/138 (1%)
Query: 102 VLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKR 161
+L+ SY P++V KRAI L A+VL+ + + SP+ IP+V+R+R ++ +
Sbjct: 1 MLNASYEPLHVTSAKRAITLLQYGVAEVLQNSAEVVRSPSTVLPIPSVIRLRRYVRRPRV 60
Query: 162 RRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
+ N R+N++ RD FTCQYC S ++LT+DHV+P SRGG W+N+ AC CN RKG
Sbjct: 61 HPVPFN--RRNVLRRDTFTCQYCGSADDLTLDHVMPRSRGGRHGWDNVTTACRACNQRKG 118
Query: 222 KKTLEEANMQLSRVPKAP 239
+T +EA M L P+AP
Sbjct: 119 NRTPDEAGMPLRTRPRAP 136
>gi|326386057|ref|ZP_08207681.1| HNH endonuclease [Novosphingobium nitrogenifigens DSM 19370]
gi|326209282|gb|EGD60075.1| HNH endonuclease [Novosphingobium nitrogenifigens DSM 19370]
Length = 227
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 97/187 (51%), Gaps = 21/187 (11%)
Query: 75 SGKGISG------ESEEYDSDEEFDELACFR------GLVLD-----ISYRPVNVVCWKR 117
SG ++G Y +D F A R LVL+ +SY P+++ W+
Sbjct: 17 SGDAVAGIHADRSHGGRYIADAGFANHASSRHLSNCPALVLNADYTPLSYYPLSLWPWQT 76
Query: 118 AICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRD 177
AI F+E+ D++ Y++ ++SP+ IP+V+ +R Q V+ +R NL RD
Sbjct: 77 AIKAVFLERVDIIATYEREVHSPSLDMRIPSVIALR---QYVRPSEFPA-FTRFNLFLRD 132
Query: 178 NFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPK 237
F CQYC S E+LT DHVVP GG WEN+ AC CN RKG +T E+A M+L P
Sbjct: 133 RFMCQYCGSHEHLTFDHVVPRRLGGRTTWENVSTACAPCNMRKGGRTPEQAAMRLIEEPI 192
Query: 238 APKDYDI 244
P + +
Sbjct: 193 RPTTWQL 199
>gi|126737771|ref|ZP_01753501.1| HNH endonuclease family protein [Roseobacter sp. SK209-2-6]
gi|126721164|gb|EBA17868.1| HNH endonuclease family protein [Roseobacter sp. SK209-2-6]
Length = 194
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 82/135 (60%), Gaps = 4/135 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI ++++ +L YD+ ++SP+ IP+V+ ++ ++ KR
Sbjct: 31 LSYYPLSLWSWQDAIKAAWLDRVVILAEYDEVVHSPSTEIRIPSVVVLKDYVKPQKRV-- 88
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC S+ +LT DHVVP + GG WEN+VAAC CN +KG K
Sbjct: 89 --AFTRFNLFLRDEFCCQYCGSKGDLTFDHVVPRAAGGVTSWENVVAACSPCNLKKGSKP 146
Query: 225 LEEANMQLSRVPKAP 239
L A M L + P+ P
Sbjct: 147 LHRAGMSLRKPPRRP 161
>gi|254486727|ref|ZP_05099932.1| HNH endonuclease family protein [Roseobacter sp. GAI101]
gi|214043596|gb|EEB84234.1| HNH endonuclease family protein [Roseobacter sp. GAI101]
Length = 194
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 83/136 (61%), Gaps = 4/136 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI +++++ D++ YD ++SP+ IP+V+ ++ ++ KR
Sbjct: 31 LSYYPLSLWPWQDAIKAKWLDRVDIVAEYDDYVHSPSMEIRIPSVVVLKDYVKPQKR--- 87
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC +R +LT DHVVP + GG W N+VAAC CN RKG K
Sbjct: 88 -VAFTRFNLFLRDEFCCQYCGARGDLTFDHVVPRASGGITSWRNVVAACSPCNLRKGSKA 146
Query: 225 LEEANMQLSRVPKAPK 240
L + QL + P+ P+
Sbjct: 147 LHQTGFQLRKPPRQPE 162
>gi|85709598|ref|ZP_01040663.1| HNH endonuclease family protein [Erythrobacter sp. NAP1]
gi|85688308|gb|EAQ28312.1| HNH endonuclease family protein [Erythrobacter sp. NAP1]
Length = 202
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ D++E YD+ ++SP+ IP+V+ +R Q VK+
Sbjct: 39 LSYYPLSLWPWQTAIKAVFLDRVDIVESYDREVHSPSLDMKIPSVIALR---QYVKQSEF 95
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F+CQYC S +NLT DHV+P GG+ WEN++ AC CN +KG +T
Sbjct: 96 PA-FTRFNVFLRDKFSCQYCGSPDNLTFDHVMPRRLGGKTTWENIITACAPCNMKKGGRT 154
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++A+M + P P + +
Sbjct: 155 PKQAHMPVRMKPIRPTSWQL 174
>gi|284041478|ref|YP_003391818.1| HNH endonuclease [Conexibacter woesei DSM 14684]
gi|283945699|gb|ADB48443.1| HNH endonuclease [Conexibacter woesei DSM 14684]
Length = 162
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 97/171 (56%), Gaps = 12/171 (7%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ ++ P+NV +RA+ L KA++LE+ + ++S + + P V+R+ ++V
Sbjct: 2 LVLNATFEPINVCSVRRAVVLLLKAKAEMLEHGEYHLHSGSSTVPRPMVIRLVSYVRV-P 60
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + ++R+ + RD++TCQYC SR NLT+DHV+P S+GG W+N+VA+C CN RK
Sbjct: 61 RDTHRRKITRRAVFARDDWTCQYCGSRGNLTVDHVIPRSKGGGSTWDNIVASCAPCNRRK 120
Query: 221 GKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
G +A M P+ P + I + S I P W+QYL
Sbjct: 121 GDSLPNQAGMVPKSTPRTPGPN--VFIQVASPTI---------PRAWQQYL 160
>gi|159904189|ref|YP_001551533.1| HNH endonuclease [Prochlorococcus marinus str. MIT 9211]
gi|159889365|gb|ABX09579.1| HNH endonuclease family protein [Prochlorococcus marinus str. MIT
9211]
Length = 168
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 94/172 (54%), Gaps = 14/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA L KA+ LE + P+ +P V+R+R+ ++V
Sbjct: 5 LVLNASYEPLNITTWRRATVLMLKGKAESLEEDSSRLLRPDTK--LPTVIRLRYFIKVPY 62
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ L+RK L+ RDN CQYC + + L+IDHV+P SRGG WEN+ AC CN
Sbjct: 63 KELA---LTRKTLLQRDNNCCQYCGYKGDKLSIDHVIPRSRGGADIWENVTTACLSCNVM 119
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EANM L P P I I + + + G EW++Y+
Sbjct: 120 KGNRTPQEANMPLKTKPYKP----ISTINFETTKL----INSGQHKEWKKYV 163
>gi|149202238|ref|ZP_01879211.1| HNH endonuclease family protein [Roseovarius sp. TM1035]
gi|149144336|gb|EDM32367.1| HNH endonuclease family protein [Roseovarius sp. TM1035]
Length = 172
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 83/135 (61%), Gaps = 4/135 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ + ++ D++ YD + SP+ IP+V+ ++ ++ KR
Sbjct: 9 LSYYPLSLWTWQEAVKAAWSDRVDIVAEYDHWVRSPSTVIRIPSVIVLKDYVKPQKR--- 65
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD+F CQYC S+ +LT DHVVP + GG WEN+VAAC CN RKG K+
Sbjct: 66 -VAFTRFNLFLRDDFMCQYCGSKGDLTFDHVVPRASGGVTSWENVVAACSPCNLRKGSKS 124
Query: 225 LEEANMQLSRVPKAP 239
L ++ + L + P+ P
Sbjct: 125 LRQSGLSLRKPPRMP 139
>gi|15891402|ref|NP_357074.1| hypothetical protein Atu3539 [Agrobacterium fabrum str. C58]
gi|335037467|ref|ZP_08530773.1| hypothetical protein AGRO_4782 [Agrobacterium sp. ATCC 31749]
gi|15159800|gb|AAK89859.1| conserved hypothetical protein [Agrobacterium fabrum str. C58]
gi|333791132|gb|EGL62523.1| hypothetical protein AGRO_4782 [Agrobacterium sp. ATCC 31749]
Length = 185
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 85/140 (60%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ YD ++SP+ S +P+V+ ++ +Q ++
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIIAEYDHAVSSPSFSMRLPSVVSLKTYVQPIRNPA- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC +R+ LT DHV+P + GGE W N+VAAC CN RKG K
Sbjct: 81 ---FTRFNVFLRDKFECQYCGTRDELTFDHVIPRAHGGETTWHNVVAACSPCNLRKGSKL 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++A M ++ P P D+
Sbjct: 138 PKQAGMFPAQKPFQPTVQDL 157
>gi|345303070|ref|YP_004824972.1| HNH endonuclease [Rhodothermus marinus SG0.5JP17-172]
gi|345112303|gb|AEN73135.1| HNH endonuclease [Rhodothermus marinus SG0.5JP17-172]
Length = 166
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 89/140 (63%), Gaps = 4/140 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYY-DQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ + + V +RAI L + KA+V+ + + SP+ P+V+R++ ++V
Sbjct: 6 LVLNQDFSALTVCSVERAIVLVLLRKAEVVAARPGRFVRSPSMQLPWPSVVRLKWYVRVP 65
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N++ RD + CQYC SRENLT+DH++P SRGG WENLV AC +CN+R
Sbjct: 66 YKHIM---LNRRNILRRDGYRCQYCGSRENLTVDHIIPRSRGGRDTWENLVTACTRCNNR 122
Query: 220 KGKKTLEEANMQLSRVPKAP 239
KG +T EEA M+L P P
Sbjct: 123 KGNRTPEEAGMRLRSRPFRP 142
>gi|72162610|ref|YP_290267.1| HNH nuclease [Thermobifida fusca YX]
gi|71916342|gb|AAZ56244.1| HNH nuclease [Thermobifida fusca YX]
Length = 184
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 87/143 (60%), Gaps = 7/143 (4%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT---INSPNGSFYIPAVLRVRHLLQ 157
L+L+ SY P+ V +RA+ L EKA+V+ + D T ++S +F +P+V+R+ ++
Sbjct: 20 LLLNASYEPLTTVPLRRAVLLVLREKAEVV-HSDSTGAVLHSSTMAFSVPSVIRLLRYIR 78
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
V RRRI L+R LM RD + C YC R TIDHV+P SRGG+ WEN+VAAC CN
Sbjct: 79 VPYRRRIP--LTRVALMRRDGYHCAYCDRRAE-TIDHVIPRSRGGQHVWENVVAACRSCN 135
Query: 218 SRKGKKTLEEANMQLSRVPKAPK 240
RK + LEE +L P P+
Sbjct: 136 HRKADRLLEELGWKLRVTPTVPR 158
>gi|440228079|ref|YP_007335170.1| HNH endonuclease [Rhizobium tropici CIAT 899]
gi|440039590|gb|AGB72624.1| HNH endonuclease [Rhizobium tropici CIAT 899]
Length = 185
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 86/140 (61%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ YDQ ++SP+ S +P+V+ ++ +Q +
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIIAEYDQCVSSPSFSMRLPSVVCLKTYVQPSRNPA- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC S ++LT DHV+P + GGE WEN+VAAC CN RKG K
Sbjct: 81 ---FTRFNVFLRDKFECQYCGSHDDLTFDHVIPRAHGGETTWENVVAACSPCNLRKGSKL 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++A M ++ P P D+
Sbjct: 138 PKQAGMFPAQKPYQPTVQDL 157
>gi|403720685|ref|ZP_10944124.1| hypothetical protein GORHZ_023_00130 [Gordonia rhizosphera NBRC
16068]
gi|403207590|dbj|GAB88455.1| hypothetical protein GORHZ_023_00130 [Gordonia rhizosphera NBRC
16068]
Length = 166
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 84/142 (59%), Gaps = 5/142 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQ--TINSPNGSFYIPAVLRVRHLLQV 158
L+L+ +Y P+ V +RAI L E+ADV+ D ++S + + IP+V+R+R ++V
Sbjct: 2 LLLNATYEPLTAVSLRRAIVLVLRERADVVHADDAGLAVHSADIAVPIPSVIRLRSYVKV 61
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
R I ++R LM+RD F C YCS++ TIDHVVP SRGG WEN +A C CN
Sbjct: 62 PYRAVIP--MTRAALMHRDRFRCGYCSAKAT-TIDHVVPRSRGGGHTWENCIACCASCNH 118
Query: 219 RKGKKTLEEANMQLSRVPKAPK 240
RK + L E L VP APK
Sbjct: 119 RKADRLLSELGWTLRVVPSAPK 140
>gi|408380686|ref|ZP_11178268.1| hypothetical protein QWE_23884 [Agrobacterium albertimagni AOL15]
gi|407745462|gb|EKF56996.1| hypothetical protein QWE_23884 [Agrobacterium albertimagni AOL15]
Length = 185
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 84/140 (60%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ Y+ ++ SP+ S +P+V+ ++ +Q +
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIIAEYEHSVCSPSFSMRLPSVVSLKTYVQPTRNPA- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC S E+LT DHV+P + GGE WEN+VAAC CN RKG K
Sbjct: 81 ---FTRFNVFLRDKFECQYCGSPEDLTFDHVIPRAHGGETTWENVVAACSPCNLRKGSKL 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++A M + P P D+
Sbjct: 138 PKQAGMHPHQAPYRPTVQDL 157
>gi|296170462|ref|ZP_06852050.1| HNH endonuclease [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295894933|gb|EFG74654.1| HNH endonuclease [Mycobacterium parascrofulaceum ATCC BAA-614]
Length = 166
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 94/173 (54%), Gaps = 15/173 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEY--YDQTINSPNGSFYIPAVLRVRHLLQV 158
L+L+ +Y P+ + +RAI + KADV+ + I+S S +P+V+++R ++V
Sbjct: 2 LLLNSTYEPLTALPMRRAIVMVICGKADVVHHDPAGPVIHSATSSIMVPSVIQLRTYVRV 61
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
R R+ ++R LM+RD F+C YC ++ + T+DHVVP SRGG+ WEN VA C CN
Sbjct: 62 PYRARVP--MTRAALMHRDRFSCAYCGAKAD-TVDHVVPRSRGGDHSWENCVACCSTCNH 118
Query: 219 RKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
RKG K L E L R P +P T R+L K W +YL
Sbjct: 119 RKGDKLLTELGWVLRRAP----------LPPTGQHWRLLSTVKELDPAWARYL 161
>gi|254292669|ref|YP_003058692.1| HNH endonuclease [Hirschia baltica ATCC 49814]
gi|254041200|gb|ACT57995.1| HNH endonuclease [Hirschia baltica ATCC 49814]
Length = 199
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 87/156 (55%), Gaps = 9/156 (5%)
Query: 94 ELACFRGLVLD-----ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPA 148
++A LVL+ +SY P+++ W+ A+ F+EK DV+ YD ++SP+ +P+
Sbjct: 8 QIASSPALVLNADFRPLSYFPLSLWPWQEAVKAVFLEKVDVVAEYDFVVHSPSFEMRLPS 67
Query: 149 VLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWEN 208
V+ +R VK+ R +R NL RD F C YC S ++LT DHV+P +GG WEN
Sbjct: 68 VIALRDF---VKQDR-SPAFTRFNLFLRDGFKCVYCGSPDDLTFDHVIPRHKGGRTTWEN 123
Query: 209 LVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDI 244
+ AC CN RKG + EA M +S P P Y +
Sbjct: 124 IATACSPCNLRKGGRMPSEAGMVISPPPSCPDTYHL 159
>gi|399071595|ref|ZP_10750043.1| restriction endonuclease [Caulobacter sp. AP07]
gi|398043268|gb|EJL36188.1| restriction endonuclease [Caulobacter sp. AP07]
Length = 186
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 82/140 (58%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ I F+E+ DV+ YD ++SP+ +P+V+ ++ Q V + R
Sbjct: 23 LSYYPLSLWPWQEVIKAVFLERVDVVSTYDHVVHSPSFEMKLPSVVSLK---QYVPQDR- 78
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F+CQYC + ++LT DHV+P SRGG WEN+V AC CN KG +T
Sbjct: 79 PPAFTRFNLFLRDGFSCQYCGAPDDLTFDHVIPRSRGGRTTWENIVTACAPCNLSKGGRT 138
Query: 225 LEEANMQLSRVPKAPKDYDI 244
EA M + P +++
Sbjct: 139 PREAGMHPFHTARRPSMHEL 158
>gi|254472232|ref|ZP_05085632.1| HNH endonuclease [Pseudovibrio sp. JE062]
gi|211958515|gb|EEA93715.1| HNH endonuclease [Pseudovibrio sp. JE062]
Length = 201
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 97/168 (57%), Gaps = 10/168 (5%)
Query: 82 ESEEYDSDEEFDELACFRGLVLD-----ISYRPVNVVCWKRAICLEFMEKADVLEYYDQT 136
E+ EY + E A F LVL+ +SY P+++ W+ A+ F+++ +++ YDQ
Sbjct: 11 ETPEYVVNAVVSEGA-FPALVLNADYRPLSYYPLSLWGWQEAVKAVFLDRVNIVSEYDQV 69
Query: 137 INSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVV 196
+ SP+ F +P+V+ ++ ++ + +R N+ RD F CQYC S +LT DH++
Sbjct: 70 VRSPSFEFQLPSVVALKSFVETERNPA----FTRFNVFLRDKFQCQYCGSERDLTFDHLI 125
Query: 197 PASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDI 244
P S+GG W+N++ AC CN RK K+ +E NM+ ++P P+ D+
Sbjct: 126 PRSKGGLTTWDNVITACSPCNLRKANKSWQEMNMRPMQMPFIPRVQDL 173
>gi|418936768|ref|ZP_13490461.1| HNH endonuclease [Rhizobium sp. PDO1-076]
gi|375056527|gb|EHS52709.1| HNH endonuclease [Rhizobium sp. PDO1-076]
Length = 185
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 85/140 (60%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ YDQ++ SP+ S +P+V+ ++ +Q +
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIIAEYDQSVCSPSFSMRLPSVVSLKTYVQPTR---- 77
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC S ++LT DHV+P + GGE WEN+VAAC CN RKG K
Sbjct: 78 NPAFTRFNVFLRDRFECQYCGSEDDLTFDHVIPRAHGGETTWENVVAACSPCNLRKGSKL 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
+A+M + P P D+
Sbjct: 138 PRQASMFPHQKPYRPTVQDL 157
>gi|332716325|ref|YP_004443791.1| hypothetical protein AGROH133_11743 [Agrobacterium sp. H13-3]
gi|418405922|ref|ZP_12979242.1| hypothetical protein AT5A_01830 [Agrobacterium tumefaciens 5A]
gi|325063010|gb|ADY66700.1| hypothetical protein AGROH133_11743 [Agrobacterium sp. H13-3]
gi|358007835|gb|EHK00158.1| hypothetical protein AT5A_01830 [Agrobacterium tumefaciens 5A]
Length = 185
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 85/140 (60%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ YD ++SP+ S +P+V+ ++ +Q +
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIIAEYDHAVSSPSFSMRLPSVVSLKTYVQPTRNPA- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC +R++LT DHV+P + GGE W N+VAAC CN RKG K
Sbjct: 81 ---FTRFNVFLRDKFECQYCGTRDDLTFDHVIPRAHGGETTWHNVVAACSPCNLRKGSKL 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++A M ++ P P D+
Sbjct: 138 PKQAGMFPAQKPFQPTVQDL 157
>gi|374328629|ref|YP_005078813.1| HNH endonuclease family protein [Pseudovibrio sp. FO-BEG1]
gi|359341417|gb|AEV34791.1| HNH endonuclease family protein [Pseudovibrio sp. FO-BEG1]
Length = 201
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 97/168 (57%), Gaps = 10/168 (5%)
Query: 82 ESEEYDSDEEFDELACFRGLVLD-----ISYRPVNVVCWKRAICLEFMEKADVLEYYDQT 136
E+ EY + E A F LVL+ +SY P+++ W+ A+ F+++ +++ YDQ
Sbjct: 11 ETPEYVVNAVVSEGA-FPALVLNADYRPLSYYPLSLWGWQEAVKAVFLDRVNIVSEYDQV 69
Query: 137 INSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVV 196
+ SP+ F +P+V+ ++ ++ + +R N+ RD F CQYC S +LT DH++
Sbjct: 70 VRSPSFEFQLPSVVALKSFVETERNPA----FTRFNVFLRDKFQCQYCGSERDLTFDHLI 125
Query: 197 PASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDI 244
P S+GG W+N++ AC CN RK K+ +E NM+ ++P P+ D+
Sbjct: 126 PRSKGGLTTWDNVITACSPCNLRKANKSWQEMNMRPVQMPFIPRVQDL 173
>gi|41408388|ref|NP_961224.1| hypothetical protein MAP2290c [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|118464205|ref|YP_880931.1| HNH endonuclease [Mycobacterium avium 104]
gi|254774520|ref|ZP_05216036.1| HNH endonuclease family protein [Mycobacterium avium subsp. avium
ATCC 25291]
gi|417750200|ref|ZP_12398569.1| restriction endonuclease [Mycobacterium avium subsp.
paratuberculosis S397]
gi|440776427|ref|ZP_20955273.1| HNH endonuclease [Mycobacterium avium subsp. paratuberculosis S5]
gi|41396744|gb|AAS04607.1| hypothetical protein MAP_2290c [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|118165492|gb|ABK66389.1| HNH endonuclease family protein [Mycobacterium avium 104]
gi|336458276|gb|EGO37256.1| restriction endonuclease [Mycobacterium avium subsp.
paratuberculosis S397]
gi|436723594|gb|ELP47402.1| HNH endonuclease [Mycobacterium avium subsp. paratuberculosis S5]
Length = 215
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 94/175 (53%), Gaps = 15/175 (8%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEY--YDQTINSPNGSFYIPAVLRVRHLL 156
R L+L+ +Y P+ + +RAI + KADV+ + I+S S +P+V+++R +
Sbjct: 49 RVLLLNSTYEPLTALPMRRAIVMVICGKADVVHHDPAGPVIHSATSSIVMPSVIQLRSYV 108
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R R+ ++R LM+RD F C YC ++ + T+DHVVP SRGG+ WEN VA C C
Sbjct: 109 RVPYRARVP--MTRAALMHRDRFCCAYCGAKAD-TVDHVVPRSRGGDHSWENCVACCSTC 165
Query: 217 NSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
N RKG K L E L R P +P T R+L K W +YL
Sbjct: 166 NHRKGDKLLNELGWTLRRPP----------LPPTGQHWRLLSTVKELDPAWARYL 210
>gi|269125590|ref|YP_003298960.1| HNH endonuclease [Thermomonospora curvata DSM 43183]
gi|268310548|gb|ACY96922.1| HNH endonuclease [Thermomonospora curvata DSM 43183]
Length = 169
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 100/178 (56%), Gaps = 17/178 (9%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT---INSPNGSFYIPAVLRVRHLLQ 157
L+L+ SY P+ + +RA+CL +KA+V+ ++D T + S + +P+V+R+R ++
Sbjct: 5 LLLNASYEPLTTLPLRRAVCLVLRDKAEVV-HHDSTGAVLRSASTVMEVPSVIRLRRYVR 63
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
+ R R+ L+R LM RDNF C YC R TIDHV+P SRGG+ WEN VA+C CN
Sbjct: 64 IPFRTRVP--LTRAALMRRDNFRCAYCGHRAE-TIDHVIPRSRGGKHVWENCVASCGPCN 120
Query: 218 SRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYLPQHS 275
RK + LEE L P+ P+ A R++ + + +W Y+ Q++
Sbjct: 121 HRKADRLLEELGWVLRVTPQVPR----------GAHWRLIGITDDSDPQWAPYVTQYA 168
>gi|39933633|ref|NP_945909.1| HNH endonuclease [Rhodopseudomonas palustris CGA009]
gi|192288988|ref|YP_001989593.1| HNH endonuclease [Rhodopseudomonas palustris TIE-1]
gi|39647479|emb|CAE26000.1| HNH endonuclease:HNH nuclease [Rhodopseudomonas palustris CGA009]
gi|192282737|gb|ACE99117.1| HNH endonuclease [Rhodopseudomonas palustris TIE-1]
Length = 185
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 86/140 (61%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ F+++ +++ +YD+ ++SPN F +P+V+ ++ + +
Sbjct: 22 LSYYPLSLWSWQDAVKAVFLDRVNIVAHYDRAVHSPNLEFRLPSVVSLKSFV----KPTT 77
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC + ++LT DH++P S+GG+ WEN+VAAC CN RKG T
Sbjct: 78 NPAFTRFNVFLRDRFVCQYCGAPDDLTFDHIIPRSKGGQTTWENVVAACSPCNLRKGNLT 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
E+A M + AP + +
Sbjct: 138 PEQAKMFPRQTAFAPTVHQL 157
>gi|340028712|ref|ZP_08664775.1| HNH endonuclease [Paracoccus sp. TRP]
Length = 198
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 85/143 (59%), Gaps = 4/143 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ ++ YD+ + S S IP+V+ ++ ++ KR
Sbjct: 34 LSYYPLSLWPWQEAIKAVFLDRVQIIAEYDEVVRSQRYSIRIPSVVVLKDYIKPQKR--- 90
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC +R LT DHVVP SRGG WEN+VAAC CN +K K+
Sbjct: 91 -VAFTRFNLFLRDEFCCQYCGARGELTFDHVVPRSRGGITSWENVVAACSPCNLKKANKS 149
Query: 225 LEEANMQLSRVPKAPKDYDILAI 247
L+ + M+L R P P ++ AI
Sbjct: 150 LKNSGMRLRRPPCRPTPEEMHAI 172
>gi|268317139|ref|YP_003290858.1| HNH endonuclease [Rhodothermus marinus DSM 4252]
gi|262334673|gb|ACY48470.1| HNH endonuclease [Rhodothermus marinus DSM 4252]
Length = 166
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 89/140 (63%), Gaps = 4/140 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYY-DQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ + + V +RA+ L + KA+V+ + + SP+ P+V+R++ ++V
Sbjct: 6 LVLNQDFSALTVCSVERAVVLVLLRKAEVVAARPGRFVRSPSMQLPWPSVVRLKWYVRVP 65
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N++ RD + CQYC SRENLT+DH++P SRGG WENLV AC +CN+R
Sbjct: 66 YKHIM---LNRRNILRRDGYRCQYCGSRENLTVDHIIPRSRGGRDTWENLVTACTRCNNR 122
Query: 220 KGKKTLEEANMQLSRVPKAP 239
KG +T EEA M+L P P
Sbjct: 123 KGNRTPEEAGMKLRSRPFRP 142
>gi|334343703|ref|YP_004552255.1| HNH endonuclease [Sphingobium chlorophenolicum L-1]
gi|334100325|gb|AEG47749.1| HNH endonuclease [Sphingobium chlorophenolicum L-1]
Length = 188
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 82/140 (58%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+E+ D++ Y++ ++SP+ IP+V+ ++ Q VK
Sbjct: 25 LSYYPLSLWPWQTAIKAVFLERVDIVASYERQVHSPSLQMQIPSVIALK---QYVKPSE- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC S +LT DHVVP GG WEN+ AC CN +KG +T
Sbjct: 81 HPAFTRFNLFLRDKFACQYCGSPHDLTFDHVVPRRAGGRTTWENVATACSPCNLKKGGRT 140
Query: 225 LEEANMQLSRVPKAPKDYDI 244
+EA+MQL P P + +
Sbjct: 141 PKEAHMQLHVTPIRPTSWQL 160
>gi|149185432|ref|ZP_01863748.1| HNH endonuclease family protein [Erythrobacter sp. SD-21]
gi|148830652|gb|EDL49087.1| HNH endonuclease family protein [Erythrobacter sp. SD-21]
Length = 172
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 82/140 (58%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ DV+ YD+ ++SPN IP+V+ ++ Q VK
Sbjct: 9 LSYYPLSLWPWQTAIKAIFLDRVDVIAIYDREVHSPNLDMKIPSVIALK---QYVKPSEF 65
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQ+C + NLT DHVVP GG+ WEN+ AC CN +KG +T
Sbjct: 66 PA-FTRFNLFLRDRFACQFCGDQNNLTFDHVVPRRLGGKTTWENIATACAPCNMKKGGRT 124
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++A MQL P P + +
Sbjct: 125 PKQAGMQLYAEPIRPTHWQL 144
>gi|400536402|ref|ZP_10799937.1| HNH endonuclease [Mycobacterium colombiense CECT 3035]
gi|400330484|gb|EJO87982.1| HNH endonuclease [Mycobacterium colombiense CECT 3035]
Length = 215
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 94/175 (53%), Gaps = 15/175 (8%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEY--YDQTINSPNGSFYIPAVLRVRHLL 156
R L+L+ +Y P+ + +RAI + KADV+ + I+S S +P+V+++R +
Sbjct: 49 RVLLLNSTYEPLTALPMRRAIVMVICGKADVVHHDPAGPVIHSATSSIVVPSVIQLRSYV 108
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R R+ ++R LM+RD F C YC ++ + T+DHV+P SRGG+ WEN VA C C
Sbjct: 109 RVPYRARVP--MTRAALMHRDRFCCAYCGAKAD-TVDHVLPRSRGGDHSWENCVACCSTC 165
Query: 217 NSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
N RKG K L E L R P +P T R+L K W +YL
Sbjct: 166 NHRKGDKLLSELGWALRRPP----------LPPTGQHWRLLSTVKELDPAWARYL 210
>gi|359424242|ref|ZP_09215364.1| hypothetical protein GOAMR_24_00710 [Gordonia amarae NBRC 15530]
gi|358240516|dbj|GAB04946.1| hypothetical protein GOAMR_24_00710 [Gordonia amarae NBRC 15530]
Length = 192
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 102/199 (51%), Gaps = 19/199 (9%)
Query: 79 ISGESEEYDSDEEFDELACFRG----LVLDISYRPVNVVCWKRAICLEFMEKADVL--EY 132
+ G + + + +E + + G L+L+ ++ P+ V +RAI L ++ADV+ +
Sbjct: 2 LPGAGDTHSASDEGNRGGTYWGRRRVLLLNATFEPLTAVTIRRAIVLVLRDRADVVHADA 61
Query: 133 YDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTI 192
+++S + +P V+R+R ++V R + L+R LM+RD+F C YC ++ TI
Sbjct: 62 AGNSVHSAGMAIPVPTVIRLRTYVRVPYRASVP--LTRAALMHRDHFRCGYCGTKAT-TI 118
Query: 193 DHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSA 252
DH+VP SRGG WEN VA C CN RK K L E L VP APK
Sbjct: 119 DHIVPRSRGGGHSWENCVACCASCNHRKADKLLSELGWTLRVVPAAPKGRH--------- 169
Query: 253 AIRMLRVRKGTPVEWRQYL 271
R+L K +W QY+
Sbjct: 170 -WRLLATVKVIDPDWVQYI 187
>gi|399988974|ref|YP_006569324.1| HNH endonuclease [Mycobacterium smegmatis str. MC2 155]
gi|399233536|gb|AFP41029.1| HNH endonuclease [Mycobacterium smegmatis str. MC2 155]
Length = 214
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 85/144 (59%), Gaps = 5/144 (3%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLL 156
R L+L+ +Y P+ + +RA+ + KADV+ + I+S + S +P+V+R+R +
Sbjct: 48 RVLLLNATYEPLTALPLRRAVIMVVCGKADVVHDDPTSPVIHSASRSIVVPSVIRLRTYV 107
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R R+ ++R LM+RD F C YC R + T+DHVVP SRGGE WEN VAAC C
Sbjct: 108 RVPYRARVP--MTRAALMHRDRFRCAYCGGRAD-TVDHVVPRSRGGEHSWENCVAACATC 164
Query: 217 NSRKGKKTLEEANMQLSRVPKAPK 240
N RK + L E L VP PK
Sbjct: 165 NHRKADRLLTELGWTLRCVPMPPK 188
>gi|443492022|ref|YP_007370169.1| HNH endonuclease [Mycobacterium liflandii 128FXT]
gi|442584519|gb|AGC63662.1| HNH endonuclease [Mycobacterium liflandii 128FXT]
Length = 213
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 94/175 (53%), Gaps = 15/175 (8%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLL 156
R L+L+ +Y P+ + +RAI + KADV+ + I+S + +P+V+++R +
Sbjct: 47 RVLLLNSTYEPLTALPMRRAIVMVICGKADVVHDDPAGPVIHSATQTIVVPSVIQLRTYV 106
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R R+ ++R LM+RD F C YC ++ + T+DHVVP SRGGE WEN VA C C
Sbjct: 107 RVPYRARVP--MTRAALMHRDRFCCAYCGAKAD-TVDHVVPRSRGGEHSWENCVACCSAC 163
Query: 217 NSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
N RKG K L E L R P +P T R+L K W +YL
Sbjct: 164 NHRKGDKLLTELGWSLRRTP----------LPPTGQHWRLLSTIKELDPSWARYL 208
>gi|323137342|ref|ZP_08072420.1| HNH endonuclease [Methylocystis sp. ATCC 49242]
gi|322397329|gb|EFX99852.1| HNH endonuclease [Methylocystis sp. ATCC 49242]
Length = 190
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 85/140 (60%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ YD+T+ SP+ +P+V+ ++ ++ +
Sbjct: 27 LSYYPLSLWGWQDAIKAVFLDRVNIVSEYDKTVKSPSFEIRLPSVVSLKEYVRPTR---- 82
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+ +R N+ RD FTCQYC + + LT DHV+P S+GG WEN+VAAC CN RKG +
Sbjct: 83 QPAFTRFNVFLRDRFTCQYCGAHDELTFDHVIPRSKGGATTWENVVAACSPCNLRKGDRL 142
Query: 225 LEEANMQLSRVPKAPKDYDI 244
E +M ++ P P D+
Sbjct: 143 PHEVHMSPAQAPFQPSVSDL 162
>gi|404450624|ref|ZP_11015604.1| restriction endonuclease [Indibacter alkaliphilus LW1]
gi|403763679|gb|EJZ24623.1| restriction endonuclease [Indibacter alkaliphilus LW1]
Length = 171
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 85/142 (59%), Gaps = 4/142 (2%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQ-TINSPNGSFYIPAVLRVRHLLQ 157
R LVL++ + PV VV ++A+ L F+EK L YD + + N F PAV+R+
Sbjct: 4 RVLVLNLDHSPVAVVTVQKALVLIFLEKVSCLSSYDTLVVRTVNREFNYPAVIRLNEYKN 63
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
+ + + L+R NL RD CQYC S++ LTIDHV+P S+GG+ W NLV AC +CN
Sbjct: 64 IPYKGVL---LNRNNLFKRDGNECQYCGSKKMLTIDHVIPKSKGGKTNWSNLVTACHRCN 120
Query: 218 SRKGKKTLEEANMQLSRVPKAP 239
+KG K+ E++ ++L P P
Sbjct: 121 VQKGDKSPEQSGLKLRTTPFRP 142
>gi|406707748|ref|YP_006758100.1| HNH endonuclease [alpha proteobacterium HIMB59]
gi|406653524|gb|AFS48923.1| HNH endonuclease [alpha proteobacterium HIMB59]
Length = 186
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 84/143 (58%), Gaps = 7/143 (4%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ WK + F+++ +++E YDQ ++SP+ Y+P+++ ++ +
Sbjct: 19 LSYFPLSIWSWKDTVKAVFLDRVNIVEEYDQKVSSPSFEMYLPSIIALKDYIP----HNH 74
Query: 165 KNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
+R N+ RD+FTCQYC S + LT DH++P S+GG WEN+V AC CN KG
Sbjct: 75 TPAFTRFNVFLRDDFTCQYCYEKFSTKELTFDHLIPRSKGGLTNWENVVTACSHCNWTKG 134
Query: 222 KKTLEEANMQLSRVPKAPKDYDI 244
K+L + +L R PK P Y +
Sbjct: 135 SKSLSQVGFKLMRKPKEPSQYSL 157
>gi|183983794|ref|YP_001852085.1| hypothetical protein MMAR_3820 [Mycobacterium marinum M]
gi|183177120|gb|ACC42230.1| conserved hypothetical protein [Mycobacterium marinum M]
Length = 213
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 94/175 (53%), Gaps = 15/175 (8%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLL 156
R L+L+ +Y P+ + +RAI + KADV+ + I+S + +P+V+++R +
Sbjct: 47 RVLLLNSTYEPLTALPMRRAIVMVICGKADVVHDDPAGPVIHSATRTIVVPSVIQLRTYV 106
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R R+ ++R LM+RD F C YC ++ + T+DHVVP SRGGE WEN VA C C
Sbjct: 107 RVPYRARVP--MTRAALMHRDRFCCAYCGAKAD-TVDHVVPRSRGGEHSWENCVACCSAC 163
Query: 217 NSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
N RKG K L E L R P +P T R+L K W +YL
Sbjct: 164 NHRKGDKLLTELGWSLRRTP----------LPPTGQHWRLLSTIKELDPSWARYL 208
>gi|85714890|ref|ZP_01045876.1| HNH endonuclease [Nitrobacter sp. Nb-311A]
gi|85698376|gb|EAQ36247.1| HNH endonuclease [Nitrobacter sp. Nb-311A]
Length = 206
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 86/140 (61%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++E YD+ + SP+ +P+V+ ++ + +
Sbjct: 43 LSYYPLSLWSWQDAIKAVFLDRVNIVERYDRAVRSPSFEIQLPSVVSLKSFV----KPST 98
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC++ E+LT DH++P S+GG+ W+N+VAAC CN RKG T
Sbjct: 99 HPAFTRFNVFLRDRFMCQYCTAVEDLTFDHIIPRSKGGQTTWDNVVAACSPCNLRKGNLT 158
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++A M + P AP + +
Sbjct: 159 PQQAGMFPRQAPFAPTVHQL 178
>gi|118470673|ref|YP_888955.1| HNH endonuclease [Mycobacterium smegmatis str. MC2 155]
gi|118171960|gb|ABK72856.1| HNH endonuclease family protein [Mycobacterium smegmatis str. MC2
155]
Length = 192
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 85/144 (59%), Gaps = 5/144 (3%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLL 156
R L+L+ +Y P+ + +RA+ + KADV+ + I+S + S +P+V+R+R +
Sbjct: 26 RVLLLNATYEPLTALPLRRAVIMVVCGKADVVHDDPTSPVIHSASRSIVVPSVIRLRTYV 85
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R R+ ++R LM+RD F C YC R + T+DHVVP SRGGE WEN VAAC C
Sbjct: 86 RVPYRARVP--MTRAALMHRDRFRCAYCGGRAD-TVDHVVPRSRGGEHSWENCVAACATC 142
Query: 217 NSRKGKKTLEEANMQLSRVPKAPK 240
N RK + L E L VP PK
Sbjct: 143 NHRKADRLLTELGWTLRCVPMPPK 166
>gi|297562359|ref|YP_003681333.1| HNH endonuclease [Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
gi|296846807|gb|ADH68827.1| HNH endonuclease [Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
Length = 183
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 84/142 (59%), Gaps = 5/142 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQ--TINSPNGSFYIPAVLRVRHLLQV 158
L+L+ S+ P+ + +RAI L EKA+V+ D ++S S+ +P+V+R+R + V
Sbjct: 19 LLLNASFEPLTTLPLRRAILLVLREKAEVVHQDDAGAILHSATRSYDVPSVIRLRRYISV 78
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
RR+ L+R LM RD TC YC + TIDHV+P SRGG WEN+VAAC CN
Sbjct: 79 PYSRRVP--LTRVALMRRDRHTCGYCGKKAE-TIDHVIPRSRGGAHVWENVVAACKPCNH 135
Query: 219 RKGKKTLEEANMQLSRVPKAPK 240
RK K L+E +L PK PK
Sbjct: 136 RKADKFLDELGWELHVTPKVPK 157
>gi|110598672|ref|ZP_01386937.1| HNH endonuclease [Chlorobium ferrooxidans DSM 13031]
gi|110339725|gb|EAT58235.1| HNH endonuclease [Chlorobium ferrooxidans DSM 13031]
Length = 170
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 102/173 (58%), Gaps = 16/173 (9%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKA-DVLEYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ SY P+ V ++A+ L F KA V ++ I + + SF +P+++R+ ++V
Sbjct: 9 LVLNSSYEPLTVCDAQKAVLLLFCGKAVPVTHNPERVIRTVSTSFPMPSIVRLTVFVRVP 68
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRE-NLTIDHVVPASRGGEWKWENLVAACFKCNS 218
+R + L+RKN++ RD + CQYC + LTIDHVVP SRGG++ WENL+ AC +CN+
Sbjct: 69 YKRIM---LNRKNILLRDAYQCQYCGRTDLPLTIDHVVPRSRGGDYSWENLITACRRCNT 125
Query: 219 RKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
+KG KT EA+MQ + P P ++ + M +V +W+ YL
Sbjct: 126 KKGDKTPREADMQPLKQPIRP-----------NSLMFMQQVTATVSDDWKPYL 167
>gi|407798670|ref|ZP_11145577.1| HNH endonuclease family protein [Oceaniovalibus guishaninsula
JLT2003]
gi|407059631|gb|EKE45560.1| HNH endonuclease family protein [Oceaniovalibus guishaninsula
JLT2003]
Length = 194
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 79/135 (58%), Gaps = 4/135 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI ++++ ++ YDQ ++SP IP+V+ +R ++ KR
Sbjct: 31 LSYYPLSLWPWQDAIKAAWLDRVQIVAEYDQFVHSPTTRIRIPSVVVLRDYVKPQKR--- 87
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC S +LT DHVVP S GG W N+VAAC +CN KG +
Sbjct: 88 -VAFTRFNLFLRDEFCCQYCRSTGDLTFDHVVPRSSGGRTSWTNVVAACARCNLAKGARA 146
Query: 225 LEEANMQLSRVPKAP 239
L + M L R P+ P
Sbjct: 147 LAQCQMSLQRPPREP 161
>gi|379746501|ref|YP_005337322.1| HNH endonuclease family protein [Mycobacterium intracellulare ATCC
13950]
gi|378798865|gb|AFC43001.1| HNH endonuclease family protein [Mycobacterium intracellulare ATCC
13950]
Length = 191
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 94/175 (53%), Gaps = 15/175 (8%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEY--YDQTINSPNGSFYIPAVLRVRHLL 156
R L+L+ +Y P+ + +RAI + KADV+ + I+S S +P+V+++R +
Sbjct: 25 RVLLLNSTYEPLTALPMRRAIVMVICGKADVVHHDPAGPVIHSATRSIVVPSVIQLRSYV 84
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R R+ ++R LM+RD F C YC ++ + T+DHVVP SRGG+ WEN VA C C
Sbjct: 85 RVPYRARVP--MTRAALMHRDRFCCAYCGAKAD-TVDHVVPRSRGGDHSWENCVACCSTC 141
Query: 217 NSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
N RKG K L E L R P +P T R+L K W +YL
Sbjct: 142 NHRKGDKLLSELGWALRRPP----------MPPTGQHWRLLSTVKELDPAWARYL 186
>gi|338529937|ref|YP_004663271.1| HNH endonuclease domain-containing protein [Myxococcus fulvus HW-1]
gi|337256033|gb|AEI62193.1| HNH endonuclease domain-containing protein [Myxococcus fulvus HW-1]
Length = 180
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 94/175 (53%), Gaps = 14/175 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYY-DQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL S+ PV V W+RA+ L F K +V+E Y D+ + S +P+V+R ++ +
Sbjct: 4 LVLSQSFEPVARVPWQRAVMLIFQGKVEVVEEYEDRVVRSVTVEIRMPSVIR---FIRGL 60
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKC 216
+RR SR+N+ RD+ CQYC +R T DHV+P ++GG+ WEN+V AC C
Sbjct: 61 RRRPKGVKFSRENVYLRDSCRCQYCGTRVTRPEATHDHVLPRAQGGKTSWENIVIACVPC 120
Query: 217 NSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
N +KG +T E+A M L P PK + A KG P+ W ++L
Sbjct: 121 NQKKGNRTPEQARMALRTAPTKPKK-------VPEAMHLTFLFEKGMPMSWAKFL 168
>gi|86747604|ref|YP_484100.1| HNH endonuclease [Rhodopseudomonas palustris HaA2]
gi|86570632|gb|ABD05189.1| HNH endonuclease [Rhodopseudomonas palustris HaA2]
Length = 185
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 85/140 (60%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ +YD+ I+SPN +P+V+ ++ + +
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIVAHYDRAIHSPNLEIQLPSVVSLKSFV----KPST 77
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F+CQYC + E+LT DH++P S+GG+ WEN+VAAC CN RKG T
Sbjct: 78 HPAFTRFNVFLRDRFSCQYCGAPEDLTFDHIIPRSKGGQTTWENVVAACSPCNLRKGNMT 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
+A M + AP + +
Sbjct: 138 PAQARMFPRQTAFAPTVHQL 157
>gi|402826492|ref|ZP_10875682.1| HNH endonuclease [Sphingomonas sp. LH128]
gi|402259950|gb|EJU10123.1| HNH endonuclease [Sphingomonas sp. LH128]
Length = 202
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 82/140 (58%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI +E+ D++ Y++ ++SPN + IP+V+ +R Q VK
Sbjct: 39 LSYYPLSLWPWQTAIKAVVLERVDIVSSYERAVHSPNWTMQIPSVIALR---QYVKPSEF 95
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F+CQYC S NLT DHVVP GG WEN++ AC CN +KG +T
Sbjct: 96 PA-FTRFNLFLRDRFSCQYCGSPHNLTFDHVVPRRLGGRTSWENILTACAPCNLKKGGRT 154
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++ANM P P + +
Sbjct: 155 PKQANMPPLVPPIRPTSWQL 174
>gi|124026679|ref|YP_001015794.1| HNH endonuclease family protein [Prochlorococcus marinus str.
NATL1A]
gi|123961747|gb|ABM76530.1| HNH endonuclease family protein [Prochlorococcus marinus str.
NATL1A]
Length = 168
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 81/140 (57%), Gaps = 6/140 (4%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA L KA+ LE + ++ P V+R+R ++V
Sbjct: 5 LVLNASYEPLNITSWRRATVLMLKGKAESLE--EDATHNIRQDVKAPTVIRLRQFIRVPY 62
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R LSRKN+ RDN +CQYC + + L+IDHV P SRGG WEN++ AC +CN
Sbjct: 63 R---DIPLSRKNIFQRDNNSCQYCGQKNKKLSIDHVFPRSRGGSDNWENVITACLQCNVM 119
Query: 220 KGKKTLEEANMQLSRVPKAP 239
KG +T EEA M L P P
Sbjct: 120 KGNRTPEEAKMPLRSKPYKP 139
>gi|75674942|ref|YP_317363.1| HNH endonuclease [Nitrobacter winogradskyi Nb-255]
gi|74419812|gb|ABA04011.1| HNH endonuclease [Nitrobacter winogradskyi Nb-255]
Length = 191
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 84/135 (62%), Gaps = 4/135 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++E YD+ + SP+ +P+V+ ++ + +
Sbjct: 28 LSYYPLSLWSWQDAIKAVFLDRVNIVERYDRAVRSPSFEIQLPSVVSLKSFV----KPST 83
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC++ E+LT DH++P S+GG+ W+N+VAAC CN RKG T
Sbjct: 84 HPAFTRFNVFLRDRFMCQYCTAVEDLTFDHIIPRSKGGQTTWDNVVAACSPCNLRKGSLT 143
Query: 225 LEEANMQLSRVPKAP 239
++A M + P AP
Sbjct: 144 PQQAGMFPRQAPFAP 158
>gi|259419311|ref|ZP_05743228.1| HNH endonuclease [Silicibacter sp. TrichCH4B]
gi|259345533|gb|EEW57387.1| HNH endonuclease [Silicibacter sp. TrichCH4B]
Length = 194
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 82/135 (60%), Gaps = 4/135 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ ++++ ++ YD+ + SP+ IP+V+ ++ ++ KR
Sbjct: 31 LSYYPLSLWPWQDAVKAAWLDRVAIVAEYDEVVRSPSTEIRIPSVVVLKDFVKPQKR--- 87
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC ++ +LT DHVVP + GG WEN+VAAC +CN +KG K
Sbjct: 88 -VAFTRFNLFLRDEFRCQYCGAKGDLTFDHVVPRASGGITSWENVVAACSRCNLKKGSKP 146
Query: 225 LEEANMQLSRVPKAP 239
L A M L + P+ P
Sbjct: 147 LHRAGMSLRKPPRRP 161
>gi|72382937|ref|YP_292292.1| HNH endonuclease family protein [Prochlorococcus marinus str.
NATL2A]
gi|72002787|gb|AAZ58589.1| HNH nuclease [Prochlorococcus marinus str. NATL2A]
Length = 168
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 81/140 (57%), Gaps = 6/140 (4%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RA L KA+ LE + ++ P V+R+R ++V
Sbjct: 5 LVLNASYEPLNITSWRRATVLMLKGKAESLE--EDATHNIRQDVKAPTVIRLRQFIRVPY 62
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R LSRKN+ RDN +CQYC + + L+IDHV P SRGG WEN++ AC +CN
Sbjct: 63 R---DIPLSRKNIFQRDNNSCQYCGQKNKKLSIDHVFPRSRGGTDNWENVITACLQCNVM 119
Query: 220 KGKKTLEEANMQLSRVPKAP 239
KG +T EEA M L P P
Sbjct: 120 KGNRTPEEAKMPLRTKPYKP 139
>gi|87201320|ref|YP_498577.1| HNH endonuclease [Novosphingobium aromaticivorans DSM 12444]
gi|87137001|gb|ABD27743.1| HNH endonuclease [Novosphingobium aromaticivorans DSM 12444]
Length = 211
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 78/128 (60%), Gaps = 4/128 (3%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+E+ D++ Y++ ++SP +P+V+ +R + R
Sbjct: 48 LSYYPLSLWPWQTAIKAVFLERVDIVSTYEREVHSPGFGMKLPSVIALRQYV----RPSE 103
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC S E+LT DH+VP GG WEN+ AAC CN RKG +T
Sbjct: 104 YPAFTRFNLFLRDRFQCQYCGSPEHLTFDHIVPRRLGGRTSWENVAAACAPCNLRKGGRT 163
Query: 225 LEEANMQL 232
E+ANM+L
Sbjct: 164 PEQANMRL 171
>gi|383774651|ref|YP_005453720.1| hypothetical protein S23_64260 [Bradyrhizobium sp. S23321]
gi|398826008|ref|ZP_10584278.1| restriction endonuclease [Bradyrhizobium sp. YR681]
gi|381362778|dbj|BAL79608.1| hypothetical protein S23_64260 [Bradyrhizobium sp. S23321]
gi|398222215|gb|EJN08599.1| restriction endonuclease [Bradyrhizobium sp. YR681]
Length = 185
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 78/126 (61%), Gaps = 4/126 (3%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ +YDQ ++SP +P+V+ ++ ++
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIVAHYDQAVHSPTLQMQLPSVVSLKSFVKPTTHPA- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC S E+LT DH++P S+GG+ WEN+VAAC CN RKG T
Sbjct: 81 ---FTRFNVFLRDRFACQYCGSPEDLTFDHIIPRSKGGQTTWENVVAACSPCNLRKGNLT 137
Query: 225 LEEANM 230
+A M
Sbjct: 138 PAQAKM 143
>gi|218663733|ref|ZP_03519663.1| putative endonuclease protein [Rhizobium etli IE4771]
Length = 185
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 86/140 (61%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ Y+ +++SP+ S +P+V+ ++ +Q +
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIIAEYEHSVSSPSFSMRLPSVVCLKTYVQPSRNPA- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC S ++LT DHV+P + GGE WEN+VAAC CN RKG K
Sbjct: 81 ---FTRFNVFLRDRFECQYCGSHDDLTFDHVIPRAHGGETTWENVVAACSPCNLRKGSKL 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++A M S+ P P D+
Sbjct: 138 PKQAGMFPSQKPYQPTVQDL 157
>gi|27376478|ref|NP_768007.1| hypothetical protein bll1367 [Bradyrhizobium japonicum USDA 110]
gi|27349618|dbj|BAC46632.1| bll1367 [Bradyrhizobium japonicum USDA 110]
Length = 268
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 77/126 (61%), Gaps = 4/126 (3%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ +YDQ + SP +P+V+ ++ ++
Sbjct: 105 LSYYPLSLWSWQDAIKAVFLDRVNIVAHYDQAVRSPTLEMQLPSVVSLKSFVKPTTHPA- 163
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC S E+LT DH++P S+GG+ WEN+VAAC CN RKG T
Sbjct: 164 ---FTRFNVFLRDRFACQYCGSPEDLTFDHIIPRSKGGQTTWENVVAACSPCNLRKGNLT 220
Query: 225 LEEANM 230
+A M
Sbjct: 221 PAQAKM 226
>gi|99081003|ref|YP_613157.1| HNH endonuclease [Ruegeria sp. TM1040]
gi|99037283|gb|ABF63895.1| HNH endonuclease [Ruegeria sp. TM1040]
Length = 194
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 82/135 (60%), Gaps = 4/135 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ ++++ ++ YD+ + SP+ IP+V+ ++ ++ KR
Sbjct: 31 LSYYPLSLWPWQDAVKAAWLDRVAIVAEYDEVVRSPSTEIRIPSVVVLKDFVKPQKR--- 87
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC ++ +LT DHVVP + GG WEN+VAAC +CN +KG K
Sbjct: 88 -VAFTRFNLFLRDEFRCQYCGAKGDLTFDHVVPRASGGITSWENVVAACSRCNLKKGSKP 146
Query: 225 LEEANMQLSRVPKAP 239
L A M L + P+ P
Sbjct: 147 LHRAGMSLRKPPRRP 161
>gi|73748378|ref|YP_307617.1| HNH endonuclease domain-containing protein [Dehalococcoides sp.
CBDB1]
gi|289432426|ref|YP_003462299.1| HNH endonuclease [Dehalococcoides sp. GT]
gi|452203383|ref|YP_007483516.1| HNH endonuclease family protein [Dehalococcoides mccartyi DCMB5]
gi|73660094|emb|CAI82701.1| HNH endonuclease domain protein [Dehalococcoides sp. CBDB1]
gi|288946146|gb|ADC73843.1| HNH endonuclease [Dehalococcoides sp. GT]
gi|452110442|gb|AGG06174.1| HNH endonuclease family protein [Dehalococcoides mccartyi DCMB5]
Length = 176
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 95/172 (55%), Gaps = 13/172 (7%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ Y+P+NV +RA+ L + KA++LE +S F +P+V+R+ L +K
Sbjct: 7 LVLNQDYQPLNVCHIRRAVLLVYQSKAEMLEDGLGFWHSEKDHFALPSVIRLSCL---IK 63
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRE-NLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
++ L+R + RD TCQYC ++ LTIDHV P +GG WEN+VAAC CN
Sbjct: 64 HPPLRPKLNRAEIFSRDKHTCQYCGRKDLELTIDHVNPKHQGGPHVWENVVAACLHCNRH 123
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
K +T E+A+M+L P P+ ++P +A IR EWR YL
Sbjct: 124 KAGRTPEQAHMKLMCTPGVPQYRYGYSLPRANANIRH---------EWRPYL 166
>gi|443478225|ref|ZP_21068004.1| HNH endonuclease [Pseudanabaena biceps PCC 7429]
gi|443016523|gb|ELS31165.1| HNH endonuclease [Pseudanabaena biceps PCC 7429]
Length = 164
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 101/172 (58%), Gaps = 15/172 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ W+RAI L KA+ +E+ + I +P V+R +LQ +
Sbjct: 5 LVLNASYEPLNITNWQRAIVLLIKGKAEQVEHNGKMIYP---GMPLPTVIR---MLQYIS 58
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ L+R+N+++RD +CQYC + ++LT+DHV+P SRGG W+N++ AC +CN +
Sbjct: 59 IPYKEIPLTRRNILHRDAHSCQYCGHTGDDLTLDHVLPRSRGGVDSWDNIITACVRCNVK 118
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG +T +EA M L + P+ P + L +T +R G EW++Y+
Sbjct: 119 KGNRTPKEAAMPLRKQPRRP--HSGLHFEVTKY------LRSGNHDEWQKYI 162
>gi|334139711|ref|YP_004532905.1| HNH endonuclease [Novosphingobium sp. PP1Y]
gi|333937729|emb|CCA91087.1| HNH endonuclease [Novosphingobium sp. PP1Y]
Length = 202
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 82/140 (58%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI +E+ D++ YD+ ++SP+ + IP+V+ +R Q VK
Sbjct: 39 LSYYPLSLWPWQTAIKAVVLERVDIVSSYDRAVHSPSWTMQIPSVIALR---QYVKPSEF 95
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F+CQYC S NLT DHV+P GG WEN++ AC CN +KG +T
Sbjct: 96 PA-FTRFNLFLRDRFSCQYCGSPHNLTFDHVIPRRLGGRTSWENILTACAPCNLKKGGRT 154
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++ANM P P + +
Sbjct: 155 PKQANMPPLVPPIRPTSWQL 174
>gi|384215175|ref|YP_005606341.1| hypothetical protein BJ6T_14660 [Bradyrhizobium japonicum USDA 6]
gi|354954074|dbj|BAL06753.1| hypothetical protein BJ6T_14660 [Bradyrhizobium japonicum USDA 6]
Length = 185
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 78/126 (61%), Gaps = 4/126 (3%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ +YDQ ++SP +P+V+ ++ ++
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIVAHYDQAVHSPTLQMQLPSVVSLKSFVKPTTHPA- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC S E+LT DH++P S+GG+ WEN+VAAC CN RKG T
Sbjct: 81 ---FTRFNVFLRDRFNCQYCGSPEDLTFDHIIPRSKGGQTTWENVVAACSPCNLRKGNLT 137
Query: 225 LEEANM 230
+A M
Sbjct: 138 PAQAKM 143
>gi|170741250|ref|YP_001769905.1| HNH endonuclease [Methylobacterium sp. 4-46]
gi|168195524|gb|ACA17471.1| HNH endonuclease [Methylobacterium sp. 4-46]
Length = 183
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 83/143 (58%), Gaps = 7/143 (4%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ WK A F+++ ++ YD SP+ S +P+V+ +++ + + +
Sbjct: 17 LSYNPLSLWSWKDAFTALFLDRVTLVASYDVEARSPSRSLKVPSVVALKNYVAMAR---- 72
Query: 165 KNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
+R N+ RD F+CQYC R LT DHVVP SRGG+ WEN+VAAC CN RK
Sbjct: 73 SPAFTRYNIYLRDTFSCQYCGIRLPAGGLTFDHVVPRSRGGQSSWENVVAACSPCNLRKA 132
Query: 222 KKTLEEANMQLSRVPKAPKDYDI 244
+T EEA M L P+ P Y++
Sbjct: 133 NRTPEEAEMPLLNPPRRPSRYEL 155
>gi|114768980|ref|ZP_01446606.1| HNH endonuclease family protein [Rhodobacterales bacterium
HTCC2255]
gi|114549897|gb|EAU52778.1| HNH endonuclease family protein [Rhodobacterales bacterium
HTCC2255]
Length = 194
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 84/130 (64%), Gaps = 4/130 (3%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ ++++ +++ YD ++SP+ + IP+V+ +++ + +
Sbjct: 31 LSYFPLSLWSWQDAVKAAYLDRVNIVAEYDDIVHSPSVNIKIPSVIVLKNYV----KPST 86
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD FTCQYC S+ +T DHV+P SRGG+ WEN+VAAC CN RK ++
Sbjct: 87 STAFTRFNLFLRDEFTCQYCGSQGEMTFDHVLPRSRGGKTTWENVVAACSPCNLRKAARS 146
Query: 225 LEEANMQLSR 234
++E+ +QL R
Sbjct: 147 IKESGLQLRR 156
>gi|433631585|ref|YP_007265213.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140070010]
gi|432163178|emb|CCK60580.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140070010]
Length = 222
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 94/175 (53%), Gaps = 15/175 (8%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLL 156
R L+L+ +Y P+ + +RAI + KADV+ + I+S S +P+V+++R +
Sbjct: 56 RVLLLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRTYV 115
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R R+ ++R LM+RD F C YC ++ + T+DHVVP SRGG+ WEN VA C C
Sbjct: 116 RVPYRARVP--MTRAALMHRDRFCCAYCGAKAD-TVDHVVPRSRGGDHSWENCVACCSPC 172
Query: 217 NSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
N RKG + L E L R P +P T R+L K W +YL
Sbjct: 173 NHRKGDRLLTELGWALRRAP----------LPPTGPHWRLLSAVKELDPSWARYL 217
>gi|408786697|ref|ZP_11198433.1| hypothetical protein C241_11021 [Rhizobium lupini HPC(L)]
gi|424913186|ref|ZP_18336560.1| restriction endonuclease [Rhizobium leguminosarum bv. viciae USDA
2370]
gi|392844343|gb|EJA96866.1| restriction endonuclease [Rhizobium leguminosarum bv. viciae USDA
2370]
gi|408487657|gb|EKJ95975.1| hypothetical protein C241_11021 [Rhizobium lupini HPC(L)]
Length = 185
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 84/140 (60%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ YD ++SP+ S +P+V+ ++ +Q +
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIIAEYDHAVSSPSFSMRLPSVVSLKTYVQPTRNPA- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC +R+ LT DHV+P + GGE W N+VAAC CN +KG K
Sbjct: 81 ---FTRFNVFLRDKFECQYCGTRDELTFDHVIPRAHGGETTWHNVVAACSPCNLKKGSKL 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++A M ++ P P D+
Sbjct: 138 PKQAGMFPAQKPFQPTVQDL 157
>gi|162453875|ref|YP_001616242.1| hypothetical protein sce5599 [Sorangium cellulosum So ce56]
gi|161164457|emb|CAN95762.1| hypothetical protein sce5599 [Sorangium cellulosum So ce56]
Length = 172
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 84/143 (58%), Gaps = 6/143 (4%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
L+L P V+ W+ A+ + F+ K +V+E YD I SP+ S PAV+R++ +K
Sbjct: 6 LLLTPWMVPHKVIPWQTAVTMSFLGKVEVIEVYDDVIRSPSLSIKAPAVVRLKRPTLGMK 65
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRE---NLTIDHVVPASRGGEWKWENLVAACFKCN 217
R SR N++ RD F CQYC ++ L DHV+P +GG+ W+N+VA+C+ CN
Sbjct: 66 R---GVKFSRLNVLLRDGFRCQYCGVQKVARELNYDHVIPRVQGGKTVWDNIVASCYACN 122
Query: 218 SRKGKKTLEEANMQLSRVPKAPK 240
S K +T E+A M+L R P PK
Sbjct: 123 SAKRGRTPEQAGMKLLRAPVKPK 145
>gi|308232141|ref|ZP_07415077.2| hypothetical protein TMAG_03028 [Mycobacterium tuberculosis
SUMu001]
gi|308405120|ref|ZP_07494266.2| hypothetical protein TMLG_02225 [Mycobacterium tuberculosis
SUMu012]
gi|385991784|ref|YP_005910082.1| hypothetical protein [Mycobacterium tuberculosis CCDC5180]
gi|385995404|ref|YP_005913702.1| hypothetical protein [Mycobacterium tuberculosis CCDC5079]
gi|308214900|gb|EFO74299.1| hypothetical protein TMAG_03028 [Mycobacterium tuberculosis
SUMu001]
gi|308365332|gb|EFP54183.1| hypothetical protein TMLG_02225 [Mycobacterium tuberculosis
SUMu012]
gi|339295358|gb|AEJ47469.1| hypothetical protein CCDC5079_2279 [Mycobacterium tuberculosis
CCDC5079]
gi|339298977|gb|AEJ51087.1| hypothetical protein CCDC5180_2250 [Mycobacterium tuberculosis
CCDC5180]
gi|379028771|dbj|BAL66504.1| hypothetical protein ERDMAN_2717 [Mycobacterium tuberculosis str.
Erdman = ATCC 35801]
Length = 243
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 107/222 (48%), Gaps = 19/222 (8%)
Query: 52 NGVWSSMNKKKSSKFSVDASLNVSGKGISGESEEYDSDEEFDELACFRGLVLDISYRPVN 111
+GV + + S SV + SG E+ + E R L+L+ +Y P+
Sbjct: 34 SGVAAGVTGPASCLHSVHSHRLASGV----ETHPPNRHESASIWNRRRVLLLNSTYEPLT 89
Query: 112 VVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLS 169
+ +RAI + KADV+ + I+S S +P+V+++R ++V R R+ ++
Sbjct: 90 ALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSYVRVPYRARVP--MT 147
Query: 170 RKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEAN 229
R LM+RD F C YC + + T+DHVVP SRGG WEN VA C CN RKG + L E
Sbjct: 148 RAALMHRDRFCCAYCGGKAD-TVDHVVPRSRGGAHSWENCVACCSPCNHRKGDRLLTELG 206
Query: 230 MQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
L R P +P T R+L K W +YL
Sbjct: 207 WALRRAP----------LPPTGPHWRLLSAVKELDPSWARYL 238
>gi|84515628|ref|ZP_01002990.1| HNH endonuclease family protein [Loktanella vestfoldensis SKA53]
gi|84510911|gb|EAQ07366.1| HNH endonuclease family protein [Loktanella vestfoldensis SKA53]
Length = 197
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 90/150 (60%), Gaps = 9/150 (6%)
Query: 95 LACFRGLVLD-----ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAV 149
L F LVL+ +SY P+++ W+ A+ ++++ ++ Y +T+ SP+ IP+V
Sbjct: 19 LKHFPALVLNADYRPLSYYPLSLWPWQEAVKAAWLDRVVIVSEYAETVRSPSTEIRIPSV 78
Query: 150 LRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENL 209
+ ++ V +R++ +R NL RD F CQYC ++ +LT DHVVP + GG WEN+
Sbjct: 79 VVLKEY--VTPQRQVA--FTRFNLFLRDEFCCQYCGAKGDLTFDHVVPRAAGGVTSWENV 134
Query: 210 VAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
VAAC CN RKG K+L ++ M L + P+ P
Sbjct: 135 VAACSGCNLRKGSKSLRQSGMSLRKPPRRP 164
>gi|359399119|ref|ZP_09192126.1| HNH endonuclease [Novosphingobium pentaromativorans US6-1]
gi|357599513|gb|EHJ61224.1| HNH endonuclease [Novosphingobium pentaromativorans US6-1]
Length = 222
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 82/140 (58%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI +E+ D++ YD+ ++SP+ + IP+V+ +R Q VK
Sbjct: 59 LSYYPLSLWPWQTAIKAVVLERVDIVSSYDRAVHSPSWTMQIPSVIALR---QYVKPSEF 115
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F+CQYC S NLT DHV+P GG WEN++ AC CN +KG +T
Sbjct: 116 PA-FTRFNLFLRDRFSCQYCGSPHNLTFDHVIPRRLGGRTSWENILTACAPCNLKKGGRT 174
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++ANM P P + +
Sbjct: 175 PKQANMPPLVPPIRPTSWQL 194
>gi|254821437|ref|ZP_05226438.1| HNH endonuclease family protein [Mycobacterium intracellulare ATCC
13950]
gi|379753779|ref|YP_005342451.1| HNH endonuclease family protein [Mycobacterium intracellulare
MOTT-02]
gi|379760963|ref|YP_005347360.1| HNH endonuclease family protein [Mycobacterium intracellulare
MOTT-64]
gi|387874899|ref|YP_006305203.1| HNH endonuclease family protein [Mycobacterium sp. MOTT36Y]
gi|406029899|ref|YP_006728790.1| HNH endonuclease family protein [Mycobacterium indicus pranii MTCC
9506]
gi|443304827|ref|ZP_21034615.1| HNH endonuclease family protein [Mycobacterium sp. H4Y]
gi|378803995|gb|AFC48130.1| HNH endonuclease family protein [Mycobacterium intracellulare
MOTT-02]
gi|378808905|gb|AFC53039.1| HNH endonuclease family protein [Mycobacterium intracellulare
MOTT-64]
gi|386788357|gb|AFJ34476.1| HNH endonuclease family protein [Mycobacterium sp. MOTT36Y]
gi|405128446|gb|AFS13701.1| HNH endonuclease family protein [Mycobacterium indicus pranii MTCC
9506]
gi|442766391|gb|ELR84385.1| HNH endonuclease family protein [Mycobacterium sp. H4Y]
Length = 166
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 93/173 (53%), Gaps = 15/173 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEY--YDQTINSPNGSFYIPAVLRVRHLLQV 158
L+L+ +Y P+ + +RAI + KADV+ + I+S S +P+V+++R ++V
Sbjct: 2 LLLNSTYEPLTALPMRRAIVMVICGKADVVHHDPAGPVIHSATRSIVVPSVIQLRSYVRV 61
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
R R+ ++R LM+RD F C YC ++ + T+DHVVP SRGG+ WEN VA C CN
Sbjct: 62 PYRARVP--MTRAALMHRDRFCCAYCGAKAD-TVDHVVPRSRGGDHSWENCVACCSTCNH 118
Query: 219 RKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
RKG K L E L R P +P T R+L K W +YL
Sbjct: 119 RKGDKLLSELGWALRRPP----------MPPTGQHWRLLSTVKELDPAWARYL 161
>gi|407768601|ref|ZP_11115979.1| HNH endonuclease [Thalassospira xiamenensis M-5 = DSM 17429]
gi|407288285|gb|EKF13763.1| HNH endonuclease [Thalassospira xiamenensis M-5 = DSM 17429]
Length = 188
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 86/146 (58%), Gaps = 7/146 (4%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ + F+E+ DVL YD+ ++SP+ +P+V+ ++ + + +
Sbjct: 20 LSYFPLSLWSWQDTLKAVFLERVDVLSEYDREVHSPSFKMKLPSVISLKEYVSL----KS 75
Query: 165 KNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
+R N+ RD F+CQYC R +LT DHV+P SRGG W N+V AC CN KG
Sbjct: 76 SPAFTRFNVFLRDQFSCQYCGDRLPTSDLTFDHVIPRSRGGRTNWSNIVTACSDCNLFKG 135
Query: 222 KKTLEEANMQLSRVPKAPKDYDILAI 247
+++ EA ++L R P+ P +++ I
Sbjct: 136 SRSIREAGLRLRRTPEQPSMHELQTI 161
>gi|404419188|ref|ZP_11000949.1| HNH endonuclease [Mycobacterium fortuitum subsp. fortuitum DSM
46621]
gi|403661337|gb|EJZ15853.1| HNH endonuclease [Mycobacterium fortuitum subsp. fortuitum DSM
46621]
Length = 192
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 84/144 (58%), Gaps = 5/144 (3%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLL 156
R L+L+ +Y P+ + +RA+ + KADV+ + I+S + +P+V+R+R +
Sbjct: 26 RVLLLNSTYEPLTALPLRRAVIMVMCGKADVVHDDPSGPVIHSATRTIVVPSVIRLRTFV 85
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R RI ++R LM+RD F C YC R + T+DHV+P SRGGE WEN VAAC C
Sbjct: 86 RVPYRARIP--MTRAALMHRDRFRCAYCGGRAD-TVDHVIPRSRGGEHSWENCVAACGPC 142
Query: 217 NSRKGKKTLEEANMQLSRVPKAPK 240
N RK + L E L VP PK
Sbjct: 143 NHRKADRLLAELGWSLRCVPMPPK 166
>gi|147669158|ref|YP_001213976.1| HNH endonuclease [Dehalococcoides sp. BAV1]
gi|452204819|ref|YP_007484948.1| HNH endonuclease family protein [Dehalococcoides mccartyi BTF08]
gi|146270106|gb|ABQ17098.1| HNH endonuclease [Dehalococcoides sp. BAV1]
gi|452111875|gb|AGG07606.1| HNH endonuclease family protein [Dehalococcoides mccartyi BTF08]
Length = 176
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 95/172 (55%), Gaps = 13/172 (7%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ Y+P+NV +RA+ L + KA++LE +S F +P+V+R+ L +K
Sbjct: 7 LVLNQDYQPLNVCHIRRAVLLVYQSKAEMLEDGLGFWHSEKDHFALPSVIRLSCL---IK 63
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRE-NLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
++ L+R + RD TCQYC ++ LTIDHV P +GG WEN+VAAC CN
Sbjct: 64 HPPLRPKLNRAEIFSRDKHTCQYCGRKDLELTIDHVNPKHQGGPHVWENVVAACLHCNRH 123
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
K +T E+A+M+L P P+ ++P +A IR EWR YL
Sbjct: 124 KAGRTPEQAHMKLMCTPGVPQYRYGYSLPRANANIRH---------EWRPYL 166
>gi|220924423|ref|YP_002499725.1| HNH endonuclease [Methylobacterium nodulans ORS 2060]
gi|219949030|gb|ACL59422.1| HNH endonuclease [Methylobacterium nodulans ORS 2060]
Length = 183
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 83/143 (58%), Gaps = 7/143 (4%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ WK A F+++ ++ YD SP+ S +P+V+ +++ + + +
Sbjct: 17 LSYNPLSLWSWKDAFTALFLDRVTLVASYDVEARSPSRSLKVPSVVALKNYVAMAR---- 72
Query: 165 KNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
+R N+ RD F+CQYC R LT DHVVP SRGG+ WEN+VAAC CN RK
Sbjct: 73 SPAFTRYNIYLRDTFSCQYCGIRLPAGGLTFDHVVPRSRGGQSNWENVVAACSPCNLRKA 132
Query: 222 KKTLEEANMQLSRVPKAPKDYDI 244
+T EEA M L P+ P Y++
Sbjct: 133 NRTPEEAEMPLLNPPRRPSRYEL 155
>gi|392968887|ref|ZP_10334303.1| HNH endonuclease [Fibrisoma limi BUZ 3]
gi|387843249|emb|CCH56357.1| HNH endonuclease [Fibrisoma limi BUZ 3]
Length = 171
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 90/140 (64%), Gaps = 4/140 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQ-TINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ Y +++ +A L ++ KA+++ +Q T+ + N F +P+V+R+ + +
Sbjct: 6 LVLNQDYSALSICSVPKAFLLVYLNKAELVAESEQFTLRTVNDEFPMPSVIRLHRYVSLP 65
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N+ RD+ CQYC + E+LT+DHV+P SRGG+ W+NL+ AC +CNSR
Sbjct: 66 YKGVM---LTRQNIFKRDSHRCQYCGTPEDLTLDHVLPKSRGGKTSWDNLITACKRCNSR 122
Query: 220 KGKKTLEEANMQLSRVPKAP 239
KG T EEANM+L + P P
Sbjct: 123 KGDFTPEEANMKLRQKPFKP 142
>gi|296116613|ref|ZP_06835223.1| HNH endonuclease [Gluconacetobacter hansenii ATCC 23769]
gi|295976825|gb|EFG83593.1| HNH endonuclease [Gluconacetobacter hansenii ATCC 23769]
Length = 196
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 86/153 (56%), Gaps = 12/153 (7%)
Query: 98 FRGLVLD-----ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRV 152
F LVL+ +SY P+++ W+ AI ++++ VL YD+ ++SP+ +P+V+ +
Sbjct: 18 FPALVLNADFRPLSYFPLSLWSWQDAIKAVWLDRVSVLSEYDEVVHSPSQEVRLPSVIAL 77
Query: 153 RHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENL 209
+ +Q +R +R N+ RDNF+CQYC +R LT DHV+P S+GG WEN+
Sbjct: 78 KDYIQTARR----PAFTRFNVFLRDNFSCQYCDTRLPTHELTFDHVIPRSKGGRTTWENV 133
Query: 210 VAACFKCNSRKGKKTLEEANMQLSRVPKAPKDY 242
V AC CN KG E M SR P+ P +
Sbjct: 134 VTACSPCNLLKGSYMPHELRMYPSRTPQQPSSW 166
>gi|297172491|gb|ADI23463.1| restriction endonuclease [uncultured nuHF1 cluster bacterium
HF0770_35I22]
Length = 187
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 88/157 (56%), Gaps = 12/157 (7%)
Query: 98 FRGLVLDISYRPVNVV-----CWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRV 152
F LVL+ +RP+N W+ A+ F+ + +V+ YDQ + SP+ S IP+V+ +
Sbjct: 8 FPALVLNADFRPLNYFPLSLWSWEEAVKAVFLGRVNVVSEYDQEVCSPSISMRIPSVIAL 67
Query: 153 RHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENL 209
+ V+ R K +R NL RD F CQYC + E+LT DHVVP SRGG +WEN+
Sbjct: 68 QEY--VLSSR--KPAFTRFNLFLRDGFCCQYCGKQFLAEDLTFDHVVPKSRGGRTRWENV 123
Query: 210 VAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILA 246
V+AC CN KG + + E + R P P +Y + A
Sbjct: 124 VSACAPCNLYKGHRLVTETGVSPLRKPMVPTNYQLQA 160
>gi|402489973|ref|ZP_10836766.1| HNH endonuclease [Rhizobium sp. CCGE 510]
gi|401811312|gb|EJT03681.1| HNH endonuclease [Rhizobium sp. CCGE 510]
Length = 185
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ Y+ +++SP+ S +P+V+ ++ +Q +
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIIAEYEHSVSSPSFSMRLPSVVCLKTYVQPSRNPA- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC + ++LT DHV+P + GGE WEN+VAAC CN RKG K
Sbjct: 81 ---FTRFNVFLRDRFECQYCGAHDDLTFDHVIPRAHGGETTWENVVAACSPCNLRKGSKL 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++A+M S+ P P D+
Sbjct: 138 PKQASMFPSQKPYQPTVQDL 157
>gi|409400041|ref|ZP_11250224.1| putative HNH endonuclease [Acidocella sp. MX-AZ02]
gi|409130891|gb|EKN00625.1| putative HNH endonuclease [Acidocella sp. MX-AZ02]
Length = 186
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 86/155 (55%), Gaps = 12/155 (7%)
Query: 98 FRGLVLD-----ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRV 152
F LVL+ +SY P++ W+ A+ F+++ VL Y+Q + SP+ S +P+V+ +
Sbjct: 8 FPALVLNADFRPLSYFPLSTWTWQDAVKAVFLDRVSVLSEYEQEVRSPSFSMRLPSVIAL 67
Query: 153 RHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENL 209
R + + +R N+ RD F+CQYC R + LT DHV+P +RGG WEN+
Sbjct: 68 RDFIPSAR----MPAFTRFNVFLRDGFSCQYCLDRRATQELTFDHVIPRARGGRTSWENV 123
Query: 210 VAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDI 244
V AC CN RKG K E NM + P+ P Y++
Sbjct: 124 VTACGPCNLRKGSKMPRECNMIPRQEPRRPTGYEL 158
>gi|315498410|ref|YP_004087214.1| hnh endonuclease [Asticcacaulis excentricus CB 48]
gi|315416422|gb|ADU13063.1| HNH endonuclease [Asticcacaulis excentricus CB 48]
Length = 186
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 86/152 (56%), Gaps = 9/152 (5%)
Query: 98 FRGLVLD-----ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRV 152
+R LVL+ +SY P++ W+ + F + DV+ YD I SP+ + +P+V+ +
Sbjct: 11 WRALVLNADFRPLSYYPLSTRPWQDVVKAVFEGRVDVVSTYDVEIRSPSMTMRLPSVVSL 70
Query: 153 RHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAA 212
+ + + +R N+ RD F+CQYC R +LT DHV+P S+GG+ W N++ A
Sbjct: 71 KTYID----QNRPPAFTRYNVFLRDQFSCQYCGCRHDLTFDHVLPVSQGGKSTWTNIITA 126
Query: 213 CFKCNSRKGKKTLEEANMQLSRVPKAPKDYDI 244
C CN RKG KT ++A M L++ P P Y +
Sbjct: 127 CAPCNLRKGGKTPQQAQMALAKSPHRPTMYQL 158
>gi|392417306|ref|YP_006453911.1| restriction endonuclease [Mycobacterium chubuense NBB4]
gi|390617082|gb|AFM18232.1| restriction endonuclease [Mycobacterium chubuense NBB4]
Length = 229
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 104/195 (53%), Gaps = 10/195 (5%)
Query: 51 RNGVWSSMNKKKSSKFSVDASLNVSGKGISGESEEYDSDEEFDELACF---RGLVLDISY 107
R SS + ++ ++ + L + G+ +S + E + + R L+L+ +Y
Sbjct: 14 RAATGSSGSTANTASRALHSVLPTAATGV--DSHLHPHPAAVHEASLWGRRRVLLLNSTY 71
Query: 108 RPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIK 165
P+ + +RA+ + KADV+ + I+S + S +P+V+R+R ++V R RI
Sbjct: 72 EPLTALPMRRAVIMLMCGKADVVHDDPMGPVIHSASRSVVVPSVIRLRTYVRVPYRARIP 131
Query: 166 NNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTL 225
++R LM+RD F C YC ++ + T+DHV+P SRGG+ WEN VAAC CN RK + L
Sbjct: 132 --MTRAALMHRDRFRCAYCGTKAD-TVDHVIPRSRGGDHSWENCVAACSSCNHRKADRLL 188
Query: 226 EEANMQLSRVPKAPK 240
E L P PK
Sbjct: 189 TELGWTLRTTPLPPK 203
>gi|398378800|ref|ZP_10536954.1| restriction endonuclease [Rhizobium sp. AP16]
gi|397724142|gb|EJK84618.1| restriction endonuclease [Rhizobium sp. AP16]
Length = 185
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 86/140 (61%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ YDQ ++SP+ S +P+V+ ++ +Q +
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIIAEYDQCVSSPSFSMRLPSVVCLKTYVQPSRNPA- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC + ++LT DHV+P + GGE W+N+VAAC CN RKG K
Sbjct: 81 ---FTRFNVFLRDRFECQYCGTHDDLTFDHVIPRAHGGETTWQNVVAACSPCNLRKGSKL 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++A M ++ P P D+
Sbjct: 138 PKQAGMFPAQKPYQPTVQDL 157
>gi|341613982|ref|ZP_08700851.1| HNH endonuclease family protein [Citromicrobium sp. JLT1363]
Length = 202
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 84/140 (60%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ DV+ Y++ I+SP+ +P+V+ ++ Q VK
Sbjct: 39 LSYYPLSIWPWQTAIKAIFLDRVDVVASYEREIHSPSLDMKLPSVIALK---QYVKTSEF 95
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD FTCQYC S +LT DHVVP GG+ WEN++ AC CN +KG +T
Sbjct: 96 PA-FTRFNLFLRDRFTCQYCGSPSHLTFDHVVPRRLGGKTTWENIITACAPCNMKKGGRT 154
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++A M+L P P + +
Sbjct: 155 PKQAGMKLMLEPIRPTSWQL 174
>gi|296445443|ref|ZP_06887400.1| HNH endonuclease [Methylosinus trichosporium OB3b]
gi|296257009|gb|EFH04079.1| HNH endonuclease [Methylosinus trichosporium OB3b]
Length = 190
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 85/140 (60%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ YD+T+ SP +P+V+ ++ ++ +
Sbjct: 27 LSYYPLSLWGWQDAIKAVFLDRVNIVSEYDKTVKSPTYEMRLPSVVSLKSYVRPARH--- 83
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD FTCQYC ++ +LT DHV+P S+GG WEN+VAAC CN RKG +
Sbjct: 84 -PAFTRFNVFLRDRFTCQYCGAQHDLTFDHVIPRSKGGATTWENVVAACSPCNLRKGDRL 142
Query: 225 LEEANMQLSRVPKAPKDYDI 244
EA+M ++ P P D+
Sbjct: 143 PFEAHMIPAQPPFQPSVADL 162
>gi|374578280|ref|ZP_09651376.1| restriction endonuclease [Bradyrhizobium sp. WSM471]
gi|386398693|ref|ZP_10083471.1| restriction endonuclease [Bradyrhizobium sp. WSM1253]
gi|374426601|gb|EHR06134.1| restriction endonuclease [Bradyrhizobium sp. WSM471]
gi|385739319|gb|EIG59515.1| restriction endonuclease [Bradyrhizobium sp. WSM1253]
Length = 185
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 78/126 (61%), Gaps = 4/126 (3%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ +YDQ ++SP +P+V+ ++ ++
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIVAHYDQAVHSPTLQMQLPSVVSLKSFVKPTTHPA- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC S E+LT DH++P S+GG+ WEN+VAAC CN RKG T
Sbjct: 81 ---FTRFNVFLRDRFACQYCGSPEDLTFDHIIPRSKGGQTTWENVVAACSPCNLRKGNLT 137
Query: 225 LEEANM 230
+A M
Sbjct: 138 PVQAKM 143
>gi|374607582|ref|ZP_09680383.1| HNH endonuclease [Mycobacterium tusciae JS617]
gi|373555418|gb|EHP81988.1| HNH endonuclease [Mycobacterium tusciae JS617]
Length = 222
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 98/197 (49%), Gaps = 18/197 (9%)
Query: 59 NKKKSSKFSVDASLNVSGKGISGESEEYDSDEEFDELACF-------------RGLVLDI 105
++KK L+ + G+SG + + + R L+L+
Sbjct: 3 HRKKGPSRKAGQRLHDAAAGLSGPAVPHAQSRALHSVETHPPSTNERSLWGRRRVLLLNS 62
Query: 106 SYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRR 163
+Y P+ + +RA+ + KADV+ + I+S + +P+V+R+R ++V R R
Sbjct: 63 TYEPLTALPMRRAVIMLMCGKADVVHDDPGGPVIHSATRAIVVPSVIRLRSFVRVPYRAR 122
Query: 164 IKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKK 223
I ++R LM+RD F C YC + + T+DHVVP SRGG+ WEN VAAC CN RK +
Sbjct: 123 IP--MTRAALMHRDRFRCAYCGGKAD-TVDHVVPRSRGGDHSWENCVAACSTCNHRKADR 179
Query: 224 TLEEANMQLSRVPKAPK 240
L E L VP PK
Sbjct: 180 LLAELGWALRSVPVPPK 196
>gi|418299050|ref|ZP_12910886.1| hypothetical protein ATCR1_16026 [Agrobacterium tumefaciens
CCNWGS0286]
gi|355535779|gb|EHH05062.1| hypothetical protein ATCR1_16026 [Agrobacterium tumefaciens
CCNWGS0286]
Length = 185
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 84/140 (60%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ YD ++SP+ S +P+V+ ++ +Q +
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIIAEYDHAVSSPSFSMRLPSVVSLKTYVQPTRNPA- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC +R+ LT DHV+P + GGE W N+VAAC CN +KG K
Sbjct: 81 ---FTRFNVFLRDKFECQYCGTRDELTFDHVIPRAHGGETTWHNVVAACSPCNLKKGSKL 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++A M ++ P P D+
Sbjct: 138 PKQAGMFPAQRPFQPTVQDL 157
>gi|402848418|ref|ZP_10896676.1| HNH endonuclease family protein [Rhodovulum sp. PH10]
gi|402501324|gb|EJW12978.1| HNH endonuclease family protein [Rhodovulum sp. PH10]
Length = 172
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 81/135 (60%), Gaps = 4/135 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ +YD+ + SP+ +P+V+ L+ +
Sbjct: 9 LSYYPLSLWSWQDAIKAVFLDRVNIVAHYDKAVRSPSLEIQLPSVVS----LKTFVKPST 64
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F+CQYC S ++LT DH++P S GG+ W+N+V AC CN +KG KT
Sbjct: 65 SPAFTRFNVFLRDRFSCQYCGSHDDLTFDHLIPRSLGGQTTWDNVVTACSACNLKKGNKT 124
Query: 225 LEEANMQLSRVPKAP 239
EA M S+ P P
Sbjct: 125 PAEATMWPSQTPFQP 139
>gi|375141187|ref|YP_005001836.1| restriction endonuclease [Mycobacterium rhodesiae NBB3]
gi|359821808|gb|AEV74621.1| restriction endonuclease [Mycobacterium rhodesiae NBB3]
Length = 222
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 94/182 (51%), Gaps = 13/182 (7%)
Query: 69 DASLNVSGKGISGESEEYDSDEEFDELACFRG--------LVLDISYRPVNVVCWKRAIC 120
DA+ +SG ++ E + G L+L+ +Y P+ + +RA+
Sbjct: 18 DAAAGLSGPAVTHAQSRVLHSVETHPPSTSEGSIWGRRRVLLLNSTYEPLTALPMRRAVI 77
Query: 121 LEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDN 178
+ KADV+ + I+S S +P+V+R+R ++V R R+ ++R LM+RD
Sbjct: 78 MLMCGKADVVHDDPGGPVIHSATRSIVVPSVIRLRSFVRVPYRARVP--MTRAALMHRDR 135
Query: 179 FTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKA 238
F C YC + + T+DHVVP SRGG+ WEN VAAC CN RK + L E L VP
Sbjct: 136 FRCAYCGGKAD-TVDHVVPRSRGGDHSWENCVAACSTCNHRKADRLLAELGWALRSVPVP 194
Query: 239 PK 240
PK
Sbjct: 195 PK 196
>gi|145219009|ref|YP_001129718.1| HNH endonuclease [Chlorobium phaeovibrioides DSM 265]
gi|145205173|gb|ABP36216.1| HNH endonuclease [Chlorobium phaeovibrioides DSM 265]
Length = 170
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 104/173 (60%), Gaps = 16/173 (9%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKA-DVLEYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ SY P++V ++AI L F KA V + ++ I + ++ +P+++R+ ++V
Sbjct: 9 LVLNSSYEPLSVCDAQKAILLLFGGKAVPVTHHPERFICTVTETYPMPSIVRLTVFVRVP 68
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSREN-LTIDHVVPASRGGEWKWENLVAACFKCNS 218
+R + L+RKN++ RD F CQYC + LTIDH++P SRGGE WENL+ AC +CNS
Sbjct: 69 YKRIM---LNRKNIIRRDAFQCQYCGKTDAPLTIDHIIPRSRGGEDSWENLITACRRCNS 125
Query: 219 RKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
+KG +T EA M + + P+ P ++ + LT+AA +W+ YL
Sbjct: 126 KKGNRTPREAGMPIMKQPQRP-NHLMFMQQLTAAAAE----------DWKPYL 167
>gi|108800575|ref|YP_640772.1| HNH endonuclease [Mycobacterium sp. MCS]
gi|119869714|ref|YP_939666.1| HNH endonuclease [Mycobacterium sp. KMS]
gi|126436191|ref|YP_001071882.1| HNH endonuclease [Mycobacterium sp. JLS]
gi|108770994|gb|ABG09716.1| HNH endonuclease [Mycobacterium sp. MCS]
gi|119695803|gb|ABL92876.1| HNH endonuclease [Mycobacterium sp. KMS]
gi|126235991|gb|ABN99391.1| HNH endonuclease [Mycobacterium sp. JLS]
Length = 222
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 83/144 (57%), Gaps = 5/144 (3%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLL 156
R L+L+ +Y P+ + +RA+ + KADV+ + I+S S +P V+R+R +
Sbjct: 56 RVLLLNSTYEPLTALPLRRAVVMLICGKADVVHEDPSGPVIHSATRSISVPTVIRLRSFV 115
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R R+ ++R LM+RD F C YC ++ + T+DHVVP SRGG+ WEN VAAC C
Sbjct: 116 RVPYRARVP--MTRAALMHRDRFRCAYCGAKAD-TVDHVVPRSRGGDHSWENCVAACAPC 172
Query: 217 NSRKGKKTLEEANMQLSRVPKAPK 240
N RK L E L VP PK
Sbjct: 173 NHRKADHLLAELGWTLRHVPLPPK 196
>gi|94495855|ref|ZP_01302434.1| HNH endonuclease family protein [Sphingomonas sp. SKA58]
gi|94424547|gb|EAT09569.1| HNH endonuclease family protein [Sphingomonas sp. SKA58]
Length = 188
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 82/140 (58%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+E+ D++ Y++ ++SP+ IP+V+ ++ Q VK
Sbjct: 25 LSYYPLSLWPWQTAIKAVFLERVDIVSSYEREVHSPSLQMKIPSVIALK---QYVKPSE- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC + +LT DHVVP GG WEN+ AC CN +KG +T
Sbjct: 81 HPAFTRFNLFLRDKFACQYCGATSDLTFDHVVPRRAGGRTTWENVATACSPCNLKKGGRT 140
Query: 225 LEEANMQLSRVPKAPKDYDI 244
+EA+MQL P P + +
Sbjct: 141 PKEAHMQLHVQPIRPTSWQL 160
>gi|15609606|ref|NP_216985.1| Conserved hypothetical protein [Mycobacterium tuberculosis H37Rv]
gi|15841994|ref|NP_337031.1| hypothetical protein MT2545 [Mycobacterium tuberculosis CDC1551]
gi|148662304|ref|YP_001283827.1| hypothetical protein MRA_2495 [Mycobacterium tuberculosis H37Ra]
gi|148823669|ref|YP_001288423.1| hypothetical protein TBFG_12494 [Mycobacterium tuberculosis F11]
gi|167969794|ref|ZP_02552071.1| hypothetical protein MtubH3_17925 [Mycobacterium tuberculosis
H37Ra]
gi|253798452|ref|YP_003031453.1| hypothetical protein TBMG_01504 [Mycobacterium tuberculosis KZN
1435]
gi|254232604|ref|ZP_04925931.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|254365244|ref|ZP_04981290.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|254551518|ref|ZP_05141965.1| hypothetical protein Mtube_13829 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|289443995|ref|ZP_06433739.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289448112|ref|ZP_06437856.1| HNH endonuclease [Mycobacterium tuberculosis CPHL_A]
gi|289570625|ref|ZP_06450852.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289746251|ref|ZP_06505629.1| HNH endonuclease [Mycobacterium tuberculosis 02_1987]
gi|289751075|ref|ZP_06510453.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289754578|ref|ZP_06513956.1| HNH endonuclease [Mycobacterium tuberculosis EAS054]
gi|289758601|ref|ZP_06517979.1| HNH endonuclease [Mycobacterium tuberculosis T85]
gi|289762638|ref|ZP_06522016.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
gi|294994422|ref|ZP_06800113.1| hypothetical protein Mtub2_07872 [Mycobacterium tuberculosis 210]
gi|297635076|ref|ZP_06952856.1| hypothetical protein MtubK4_13184 [Mycobacterium tuberculosis KZN
4207]
gi|297732067|ref|ZP_06961185.1| hypothetical protein MtubKR_13304 [Mycobacterium tuberculosis KZN
R506]
gi|298525947|ref|ZP_07013356.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|306780513|ref|ZP_07418850.1| hypothetical protein TMBG_01010 [Mycobacterium tuberculosis
SUMu002]
gi|306785265|ref|ZP_07423587.1| hypothetical protein TMCG_00568 [Mycobacterium tuberculosis
SUMu003]
gi|306789624|ref|ZP_07427946.1| hypothetical protein TMDG_00947 [Mycobacterium tuberculosis
SUMu004]
gi|306793951|ref|ZP_07432253.1| hypothetical protein TMEG_02834 [Mycobacterium tuberculosis
SUMu005]
gi|306798345|ref|ZP_07436647.1| hypothetical protein TMFG_01432 [Mycobacterium tuberculosis
SUMu006]
gi|306804221|ref|ZP_07440889.1| hypothetical protein TMHG_01662 [Mycobacterium tuberculosis
SUMu008]
gi|306808791|ref|ZP_07445459.1| hypothetical protein TMGG_01030 [Mycobacterium tuberculosis
SUMu007]
gi|306968623|ref|ZP_07481284.1| hypothetical protein TMIG_01149 [Mycobacterium tuberculosis
SUMu009]
gi|306972850|ref|ZP_07485511.1| hypothetical protein TMJG_00737 [Mycobacterium tuberculosis
SUMu010]
gi|307080556|ref|ZP_07489726.1| hypothetical protein TMKG_00731 [Mycobacterium tuberculosis
SUMu011]
gi|313659403|ref|ZP_07816283.1| hypothetical protein MtubKV_13324 [Mycobacterium tuberculosis KZN
V2475]
gi|340627483|ref|YP_004745935.1| hypothetical protein MCAN_25081 [Mycobacterium canettii CIPT
140010059]
gi|375295715|ref|YP_005099982.1| hypothetical protein TBSG_01514 [Mycobacterium tuberculosis KZN
4207]
gi|383308249|ref|YP_005361060.1| hypothetical protein MRGA327_15230 [Mycobacterium tuberculosis
RGTB327]
gi|385999251|ref|YP_005917550.1| hypothetical protein MTCTRI2_2516 [Mycobacterium tuberculosis
CTRI-2]
gi|386005372|ref|YP_005923651.1| hypothetical protein MRGA423_15405 [Mycobacterium tuberculosis
RGTB423]
gi|392387110|ref|YP_005308739.1| unnamed protein product [Mycobacterium tuberculosis UT205]
gi|392431922|ref|YP_006472966.1| hypothetical protein TBXG_001490 [Mycobacterium tuberculosis KZN
605]
gi|397674372|ref|YP_006515907.1| hypothetical protein RVBD_2469c [Mycobacterium tuberculosis H37Rv]
gi|422813513|ref|ZP_16861888.1| hypothetical protein TMMG_01762 [Mycobacterium tuberculosis
CDC1551A]
gi|424804807|ref|ZP_18230238.1| hypothetical protein TBPG_01975 [Mycobacterium tuberculosis W-148]
gi|424948141|ref|ZP_18363837.1| hypothetical protein NCGM2209_2781 [Mycobacterium tuberculosis
NCGM2209]
gi|433627603|ref|YP_007261232.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140060008]
gi|433635553|ref|YP_007269180.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140070017]
gi|433642668|ref|YP_007288427.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140070008]
gi|13882269|gb|AAK46845.1| HNH endonuclease family protein [Mycobacterium tuberculosis
CDC1551]
gi|124601663|gb|EAY60673.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|134150758|gb|EBA42803.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|148506456|gb|ABQ74265.1| conserved hypothetical protein [Mycobacterium tuberculosis H37Ra]
gi|148722196|gb|ABR06821.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
gi|253319955|gb|ACT24558.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
1435]
gi|289416914|gb|EFD14154.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289421070|gb|EFD18271.1| HNH endonuclease [Mycobacterium tuberculosis CPHL_A]
gi|289544379|gb|EFD48027.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289686779|gb|EFD54267.1| HNH endonuclease [Mycobacterium tuberculosis 02_1987]
gi|289691662|gb|EFD59091.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289695165|gb|EFD62594.1| HNH endonuclease [Mycobacterium tuberculosis EAS054]
gi|289710144|gb|EFD74160.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
gi|289714165|gb|EFD78177.1| HNH endonuclease [Mycobacterium tuberculosis T85]
gi|298495741|gb|EFI31035.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|308326660|gb|EFP15511.1| hypothetical protein TMBG_01010 [Mycobacterium tuberculosis
SUMu002]
gi|308330087|gb|EFP18938.1| hypothetical protein TMCG_00568 [Mycobacterium tuberculosis
SUMu003]
gi|308333927|gb|EFP22778.1| hypothetical protein TMDG_00947 [Mycobacterium tuberculosis
SUMu004]
gi|308337730|gb|EFP26581.1| hypothetical protein TMEG_02834 [Mycobacterium tuberculosis
SUMu005]
gi|308341411|gb|EFP30262.1| hypothetical protein TMFG_01432 [Mycobacterium tuberculosis
SUMu006]
gi|308344896|gb|EFP33747.1| hypothetical protein TMGG_01030 [Mycobacterium tuberculosis
SUMu007]
gi|308349207|gb|EFP38058.1| hypothetical protein TMHG_01662 [Mycobacterium tuberculosis
SUMu008]
gi|308353829|gb|EFP42680.1| hypothetical protein TMIG_01149 [Mycobacterium tuberculosis
SUMu009]
gi|308357778|gb|EFP46629.1| hypothetical protein TMJG_00737 [Mycobacterium tuberculosis
SUMu010]
gi|308361723|gb|EFP50574.1| hypothetical protein TMKG_00731 [Mycobacterium tuberculosis
SUMu011]
gi|323718975|gb|EGB28125.1| hypothetical protein TMMG_01762 [Mycobacterium tuberculosis
CDC1551A]
gi|326904083|gb|EGE51016.1| hypothetical protein TBPG_01975 [Mycobacterium tuberculosis W-148]
gi|328458220|gb|AEB03643.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
4207]
gi|340005673|emb|CCC44839.1| conserved hypothetical protein [Mycobacterium canettii CIPT
140010059]
gi|344220298|gb|AEN00929.1| hypothetical protein MTCTRI2_2516 [Mycobacterium tuberculosis
CTRI-2]
gi|358232656|dbj|GAA46148.1| hypothetical protein NCGM2209_2781 [Mycobacterium tuberculosis
NCGM2209]
gi|378545661|emb|CCE37939.1| unnamed protein product [Mycobacterium tuberculosis UT205]
gi|380722202|gb|AFE17311.1| hypothetical protein MRGA327_15230 [Mycobacterium tuberculosis
RGTB327]
gi|380725860|gb|AFE13655.1| hypothetical protein MRGA423_15405 [Mycobacterium tuberculosis
RGTB423]
gi|392053331|gb|AFM48889.1| hypothetical protein TBXG_001490 [Mycobacterium tuberculosis KZN
605]
gi|395139277|gb|AFN50436.1| hypothetical protein RVBD_2469c [Mycobacterium tuberculosis H37Rv]
gi|432155209|emb|CCK52455.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140060008]
gi|432159216|emb|CCK56520.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140070008]
gi|432167146|emb|CCK64656.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140070017]
gi|440581947|emb|CCG12350.1| hypothetical protein MT7199_2502 [Mycobacterium tuberculosis
7199-99]
gi|444896002|emb|CCP45263.1| Conserved hypothetical protein [Mycobacterium tuberculosis H37Rv]
Length = 222
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 107/222 (48%), Gaps = 19/222 (8%)
Query: 52 NGVWSSMNKKKSSKFSVDASLNVSGKGISGESEEYDSDEEFDELACFRGLVLDISYRPVN 111
+GV + + S SV + SG E+ + E R L+L+ +Y P+
Sbjct: 13 SGVAAGVTGPASCLHSVHSHRLASGV----ETHPPNRHESASIWNRRRVLLLNSTYEPLT 68
Query: 112 VVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLS 169
+ +RAI + KADV+ + I+S S +P+V+++R ++V R R+ ++
Sbjct: 69 ALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSYVRVPYRARVP--MT 126
Query: 170 RKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEAN 229
R LM+RD F C YC + + T+DHVVP SRGG WEN VA C CN RKG + L E
Sbjct: 127 RAALMHRDRFCCAYCGGKAD-TVDHVVPRSRGGAHSWENCVACCSPCNHRKGDRLLTELG 185
Query: 230 MQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
L R P +P T R+L K W +YL
Sbjct: 186 WALRRAP----------LPPTGPHWRLLSAVKELDPSWARYL 217
>gi|296284976|ref|ZP_06862974.1| HNH endonuclease family protein [Citromicrobium bathyomarinum
JL354]
Length = 202
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 83/140 (59%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+E+ DV+ YD+ ++SP+ +P+V+ +R Q VK
Sbjct: 39 LSYYPLSIWPWQTAIKAIFLERVDVVASYDRQVHSPSLDMKLPSVIALR---QYVKPSEF 95
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC S +LT DHVVP GG+ WEN+ AC CN +KG +T
Sbjct: 96 PA-FTRFNLFLRDRFICQYCGSPSHLTFDHVVPRRLGGKTTWENISTACAPCNMKKGGRT 154
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++A M+L P P ++ +
Sbjct: 155 PKQAGMKLMVEPIRPTNWQL 174
>gi|103488559|ref|YP_618120.1| HNH endonuclease [Sphingopyxis alaskensis RB2256]
gi|98978636|gb|ABF54787.1| HNH endonuclease [Sphingopyxis alaskensis RB2256]
Length = 188
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 83/140 (59%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ F+++ ++E Y++ I+SP + IP+V+ +R Q VK
Sbjct: 25 LSYYPLSLWPWQTAVKAVFLDRVTIVENYEREIHSPTRTMPIPSVIALR---QYVKPSE- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC S ++LT DHVVP GG WEN+ AC CN +KG +T
Sbjct: 81 HPAFTRFNLFLRDRFACQYCGSGKDLTFDHVVPRRLGGRTTWENVTTACAPCNLKKGGRT 140
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++A+M L R P P + +
Sbjct: 141 PQQAHMPLHRQPWRPTSWQL 160
>gi|145223160|ref|YP_001133838.1| HNH endonuclease [Mycobacterium gilvum PYR-GCK]
gi|315443617|ref|YP_004076496.1| restriction endonuclease [Mycobacterium gilvum Spyr1]
gi|145215646|gb|ABP45050.1| HNH endonuclease [Mycobacterium gilvum PYR-GCK]
gi|315261920|gb|ADT98661.1| restriction endonuclease [Mycobacterium gilvum Spyr1]
Length = 220
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 82/144 (56%), Gaps = 5/144 (3%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLL 156
R L+L+ +Y P+ + +RA+ + KADV+ + I+S S +P V+R+R +
Sbjct: 54 RVLLLNSTYEPLTALPLRRAVIMLMCGKADVVHDDPVGPVIHSATRSIRVPTVIRLRTFV 113
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R RI ++R LM+RD F C YC S+ + T+DHV+P SRGG WEN VAAC C
Sbjct: 114 RVPYRARIP--MTRAALMHRDRFRCAYCGSKAD-TVDHVIPRSRGGAHTWENCVAACSAC 170
Query: 217 NSRKGKKTLEEANMQLSRVPKAPK 240
N RK K L E L P PK
Sbjct: 171 NHRKADKLLSELGWSLHTTPLPPK 194
>gi|405355448|ref|ZP_11024674.1| HNH endonuclease [Chondromyces apiculatus DSM 436]
gi|397091790|gb|EJJ22592.1| HNH endonuclease [Myxococcus sp. (contaminant ex DSM 436)]
Length = 180
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 93/175 (53%), Gaps = 14/175 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYY-DQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL S+ PV V W+RA+ L F K +V+E Y D+ + S +P+V+R ++ +
Sbjct: 4 LVLSQSFEPVARVPWQRAVMLIFQGKVEVVEEYEDRLVRSVTVEIRMPSVIR---FIRGL 60
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+RR SR+N+ RD CQYC +R T DHV+P ++GG+ WEN+V AC C
Sbjct: 61 RRRPKGVKFSRENVYLRDKCRCQYCGLKVTRPEATYDHVLPRAQGGKTSWENIVIACVPC 120
Query: 217 NSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
N +KG +T E+A M L P P+ L + KG P+ W ++L
Sbjct: 121 NQKKGNRTPEQARMALRTTPGKPRK-------LPESMHLTFMFEKGMPMSWAKFL 168
>gi|421597177|ref|ZP_16040843.1| hypothetical protein BCCGELA001_07611 [Bradyrhizobium sp.
CCGE-LA001]
gi|404270711|gb|EJZ34725.1| hypothetical protein BCCGELA001_07611 [Bradyrhizobium sp.
CCGE-LA001]
Length = 185
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 77/126 (61%), Gaps = 4/126 (3%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ +YDQ + SP +P+V+ ++ ++
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIVAHYDQAVRSPTLEMQLPSVVSLKSFVKPTTHPA- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC S E+LT DH++P S+GG+ WEN+VAAC CN RKG T
Sbjct: 81 ---FTRFNVFLRDRFACQYCGSPEDLTFDHIIPRSKGGQTTWENVVAACSPCNLRKGNLT 137
Query: 225 LEEANM 230
+A M
Sbjct: 138 PAQAKM 143
>gi|126726929|ref|ZP_01742768.1| HNH endonuclease family protein [Rhodobacterales bacterium
HTCC2150]
gi|126703887|gb|EBA02981.1| HNH endonuclease family protein [Rhodobacterales bacterium
HTCC2150]
Length = 194
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 83/140 (59%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ ++ + ++L YD+ I SP IP+V+ ++ ++ KR
Sbjct: 31 LSYYPLSLWPWQESVKAAVSNRVNILAEYDEVIRSPRMEIKIPSVIVLKDYVKPQKR--- 87
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F+CQYC +R+ LT DHV+P RGG WEN+VAAC CN RKG +
Sbjct: 88 -VAFTRFNLFLRDEFSCQYCGARKELTFDHVIPRCRGGVTSWENVVAACSPCNLRKGSDS 146
Query: 225 LEEANMQLSRVPKAPKDYDI 244
L++++M L R + P ++
Sbjct: 147 LKQSSMTLLRAARKPSAMEL 166
>gi|254454021|ref|ZP_05067458.1| HNH endonuclease [Octadecabacter arcticus 238]
gi|198268427|gb|EDY92697.1| HNH endonuclease [Octadecabacter arcticus 238]
Length = 200
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 79/135 (58%), Gaps = 4/135 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ ++ + D++ YD SP+ IP+V+ +R ++ K
Sbjct: 37 LSYYPLSLWSWQDAVKAAWLNRVDIIAEYDDVARSPSMEIRIPSVVVLRDFVKPQK---- 92
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
K +R NL RD F+CQYC + +LT DHVVP + GG WEN+VAAC +CN KG K+
Sbjct: 93 KVAFTRFNLFLRDEFSCQYCGTTGDLTFDHVVPRASGGVTSWENVVAACSRCNLHKGSKS 152
Query: 225 LEEANMQLSRVPKAP 239
L + + L + P P
Sbjct: 153 LHRSGLSLRKPPHQP 167
>gi|222087336|ref|YP_002545873.1| endonuclease [Agrobacterium radiobacter K84]
gi|221724784|gb|ACM27940.1| endonuclease protein [Agrobacterium radiobacter K84]
Length = 172
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 86/140 (61%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ YDQ ++SP+ S +P+V+ ++ +Q +
Sbjct: 9 LSYYPLSLWSWQDAIKAVFLDRVNIIAEYDQCVSSPSFSMRLPSVVCLKTYVQPSRNPA- 67
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC + ++LT DHV+P + GGE W+N+VAAC CN RKG K
Sbjct: 68 ---FTRFNVFLRDRFECQYCGTHDDLTFDHVIPRAHGGETTWQNVVAACSPCNLRKGSKL 124
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++A M ++ P P D+
Sbjct: 125 PKQAGMFPAQKPYQPTVQDL 144
>gi|31793650|ref|NP_856143.1| hypothetical protein Mb2496c [Mycobacterium bovis AF2122/97]
gi|121638352|ref|YP_978576.1| hypothetical protein BCG_2489c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224990846|ref|YP_002645533.1| hypothetical protein JTY_2483 [Mycobacterium bovis BCG str. Tokyo
172]
gi|289575163|ref|ZP_06455390.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
gi|339632497|ref|YP_004724139.1| hypothetical protein MAF_24860 [Mycobacterium africanum GM041182]
gi|378772205|ref|YP_005171938.1| hypothetical protein BCGMEX_2480c [Mycobacterium bovis BCG str.
Mexico]
gi|449064540|ref|YP_007431623.1| hypothetical protein K60_025650 [Mycobacterium bovis BCG str. Korea
1168P]
gi|31619243|emb|CAD97357.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
gi|121494000|emb|CAL72477.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224773959|dbj|BAH26765.1| hypothetical protein JTY_2483 [Mycobacterium bovis BCG str. Tokyo
172]
gi|289539594|gb|EFD44172.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
gi|339331853|emb|CCC27556.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
gi|341602390|emb|CCC65066.1| conserved hypothetical protein [Mycobacterium bovis BCG str. Moreau
RDJ]
gi|356594526|gb|AET19755.1| Hypothetical protein BCGMEX_2480c [Mycobacterium bovis BCG str.
Mexico]
gi|449033048|gb|AGE68475.1| hypothetical protein K60_025650 [Mycobacterium bovis BCG str. Korea
1168P]
Length = 222
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 92/175 (52%), Gaps = 15/175 (8%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLL 156
R L+L+ +Y P+ + +RAI + KADV+ + I+S S +P+V+++R +
Sbjct: 56 RVLLLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSSTRSILVPSVIQLRSYV 115
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R R+ ++R LM+RD F C YC + + T+DHVVP SRGG WEN VA C C
Sbjct: 116 RVPYRARVP--MTRAALMHRDRFCCAYCGGKAD-TVDHVVPRSRGGAHSWENCVACCSPC 172
Query: 217 NSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
N RKG + L E L R P +P T R+L K W +YL
Sbjct: 173 NHRKGDRLLTELGWALRRAP----------LPPTGPHWRLLSAVKELDPSWARYL 217
>gi|57234676|ref|YP_181281.1| HNH endonuclease domain-containing protein [Dehalococcoides
ethenogenes 195]
gi|57225124|gb|AAW40181.1| HNH endonuclease domain protein [Dehalococcoides ethenogenes 195]
Length = 177
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 95/172 (55%), Gaps = 13/172 (7%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ Y+P+NV +RA+ L + KA++LE +S F +P+V+R+ L +K
Sbjct: 7 LVLNQDYQPLNVCHVRRAVLLVYQSKAEMLENGSGFWHSEKDLFALPSVIRLSCL---IK 63
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRE-NLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
++ L+R + RD TCQYC ++ LTIDHV P +GG WEN+V AC CN
Sbjct: 64 HPPLRPKLNRAEIFSRDKHTCQYCGRKDLELTIDHVNPKHQGGPHVWENVVTACLHCNRL 123
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
K +T E+A+M+L P P+ ++P ++ +IR EWR YL
Sbjct: 124 KAGRTPEQAHMKLLSTPGVPQYRYGYSLPRSNGSIRH---------EWRPYL 166
>gi|218674261|ref|ZP_03523930.1| putative endonuclease protein [Rhizobium etli GR56]
Length = 185
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 86/140 (61%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ Y+ +++SP+ S +P+V+ ++ +Q +
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIIAEYEHSVSSPSFSMRLPSVVCLKTYVQPSRNPA- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC S ++LT DHV+P + GGE WEN+VAAC CN RKG K
Sbjct: 81 ---FTRFNVFLRDRFECQYCGSHDDLTFDHVIPRAHGGETTWENVVAACSPCNLRKGSKL 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++A M ++ P P D+
Sbjct: 138 PKQAGMFPAQKPYQPTVQDL 157
>gi|255037233|ref|YP_003087854.1| HNH endonuclease [Dyadobacter fermentans DSM 18053]
gi|254949989|gb|ACT94689.1| HNH endonuclease [Dyadobacter fermentans DSM 18053]
Length = 169
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 85/140 (60%), Gaps = 4/140 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVL-EYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ Y ++V +A L +M+KA++L E + + + N F +P V+R+ + +
Sbjct: 5 LVLNQDYSALSVCTVPKAFLLVYMKKAEMLAESQQEHLRTVNDRFPMPVVIRLHRYIHIP 64
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R + ++R+NL RD CQYC + +NLT+DHV+P SRGG+ W+NL AC +CNSR
Sbjct: 65 YRGVV---MTRQNLFKRDGNRCQYCGTHDNLTLDHVMPKSRGGKTTWDNLATACKRCNSR 121
Query: 220 KGKKTLEEANMQLSRVPKAP 239
KG T EE +M L + P P
Sbjct: 122 KGDHTPEEVDMPLKQRPFRP 141
>gi|154252085|ref|YP_001412909.1| HNH endonuclease [Parvibaculum lavamentivorans DS-1]
gi|154156035|gb|ABS63252.1| HNH endonuclease [Parvibaculum lavamentivorans DS-1]
Length = 186
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ Y+ + SP +P+V+ ++ VK R
Sbjct: 23 LSYYPLSLWSWQDAIKAVFLDRVNIVSSYETLVRSPTFEMQLPSVVSLK---SYVKPTRF 79
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD FTCQYCS+R LT DHV+P SRGG+ WEN+V AC CN +KG K
Sbjct: 80 PA-FTRFNLFLRDRFTCQYCSARLELTFDHVIPRSRGGQTTWENVVTACAPCNLKKGGKM 138
Query: 225 LEEANMQLSRVPKAPKDYDI 244
E A M + P P D+
Sbjct: 139 PEHAAMFPMQAPFRPTVGDL 158
>gi|381203188|ref|ZP_09910296.1| HNH endonuclease [Sphingobium yanoikuyae XLDN2-5]
gi|427410174|ref|ZP_18900376.1| hypothetical protein HMPREF9718_02850 [Sphingobium yanoikuyae ATCC
51230]
gi|425712307|gb|EKU75322.1| hypothetical protein HMPREF9718_02850 [Sphingobium yanoikuyae ATCC
51230]
Length = 188
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+E+ D++ Y++ ++SP+ IP+V+ ++ + R
Sbjct: 25 LSYYPLSLWPWQTAIKAIFLERVDIVSSYEREVHSPSLQMRIPSVIALKQYV----RPSE 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F+CQYC + ++LT DHVVP GG WEN+ AC CN +KG +T
Sbjct: 81 HPAFTRFNLFLRDRFSCQYCGTTQDLTFDHVVPRRAGGRTTWENVATACSPCNLKKGGRT 140
Query: 225 LEEANMQLSRVPKAPKDYDI 244
EA MQL P P + +
Sbjct: 141 PREAGMQLHVQPIRPTSWQL 160
>gi|94971227|ref|YP_593275.1| HNH endonuclease [Candidatus Koribacter versatilis Ellin345]
gi|94553277|gb|ABF43201.1| HNH endonuclease [Candidatus Koribacter versatilis Ellin345]
Length = 213
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 96/177 (54%), Gaps = 21/177 (11%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+NV +RAI L A E T +S + +P+V+R+ ++
Sbjct: 50 LVLNASYEPINVCAARRAIILVLKGVAMAEETNGHTFHSTRSALRVPSVIRL------LE 103
Query: 161 RRRIKNN---LSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACF 214
RRI + LSRKN++ RD TCQYC LT+DHV+P SRGG WENLVA C
Sbjct: 104 YRRIPHQTRALSRKNILLRDRNTCQYCGVLLGSSELTLDHVLPRSRGGLSTWENLVACCH 163
Query: 215 KCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
+CN KG + EA M+L R P+ +++ + ++R+ + +WR+YL
Sbjct: 164 QCNHEKGNRLPAEAGMKLMR---EPRPFNL------HTSRHIMRMMGRSDDKWRKYL 211
>gi|320333485|ref|YP_004170196.1| HNH endonuclease [Deinococcus maricopensis DSM 21211]
gi|319754774|gb|ADV66531.1| HNH endonuclease [Deinococcus maricopensis DSM 21211]
Length = 187
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 97/178 (54%), Gaps = 16/178 (8%)
Query: 63 SSKF-SVDASLNVSGKGISGESEEYDSDEEFDELACFRGLVLDISYRPVNVVCWKRAICL 121
S KF S+DA ++ +G+ L R LVL+ SY P+ V KRAI L
Sbjct: 2 SGKFNSIDAPEDMVARGVLN-------------LNAPRVLVLNASYEPLQVTSAKRAITL 48
Query: 122 EFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTC 181
A+VLE + SP+ +P+V+R+R ++ + + N R+N++ RD +TC
Sbjct: 49 VQYGVAEVLENSADMVRSPSTVMPVPSVVRLRRYVRRPRAHPVPFN--RRNVLRRDFYTC 106
Query: 182 QYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
QYC +RE LTIDHV P S+GG WEN+V AC CN RKG E+ + L P+AP
Sbjct: 107 QYCGAREELTIDHVHPRSKGGRHTWENVVTACRPCNQRKGSHAPEDVGLSLRSKPRAP 164
>gi|120405017|ref|YP_954846.1| HNH endonuclease [Mycobacterium vanbaalenii PYR-1]
gi|119957835|gb|ABM14840.1| HNH endonuclease [Mycobacterium vanbaalenii PYR-1]
Length = 221
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 83/144 (57%), Gaps = 5/144 (3%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLL 156
R L+L+ +Y P+ + +RA+ + KADV+ + I+S S +P V+R+R +
Sbjct: 55 RVLLLNSTYEPLTALPLRRAVIMLMCGKADVVHDDPVGPVIHSATRSIAVPTVIRLRTFV 114
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R RI ++R LM+RD F C YCS++ + T+DHV+P SRGG WEN VAAC C
Sbjct: 115 RVPYRARIP--MTRAALMHRDRFRCAYCSAKAD-TVDHVIPRSRGGAHSWENCVAACSAC 171
Query: 217 NSRKGKKTLEEANMQLSRVPKAPK 240
N RK + L E L P PK
Sbjct: 172 NHRKADRLLSELGWSLHTTPLPPK 195
>gi|311748120|ref|ZP_07721905.1| HNH endonuclease domain protein [Algoriphagus sp. PR1]
gi|126574764|gb|EAZ79145.1| HNH endonuclease domain protein [Algoriphagus sp. PR1]
Length = 169
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 88/149 (59%), Gaps = 4/149 (2%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT-INSPNGSFYIPAVLRVRHLLQ 157
R LVL++ + PV VV ++AI L +EKA L Y+ I + + +F PAV+R+
Sbjct: 4 RVLVLNLDHSPVAVVPVQKAIVLLLLEKASCLTTYELLKIRTVSRNFEYPAVIRLVDYKN 63
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
+ R + L+R NL RDN CQYC S+++LT+DHVVP S+GG+ W NLV AC +CN
Sbjct: 64 IPYRGVL---LNRSNLFKRDNGECQYCGSKKHLTVDHVVPRSKGGKTNWMNLVTACHRCN 120
Query: 218 SRKGKKTLEEANMQLSRVPKAPKDYDILA 246
KG K+ E+A + L P P LA
Sbjct: 121 VNKGDKSPEQAGLTLRNEPFRPTLSYFLA 149
>gi|420243566|ref|ZP_14747477.1| restriction endonuclease [Rhizobium sp. CF080]
gi|398059878|gb|EJL51719.1| restriction endonuclease [Rhizobium sp. CF080]
Length = 185
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 83/140 (59%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ YD ++ SP+ S +P+V+ ++ +Q +
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIIAEYDHSVCSPSFSMKLPSVVSLKTYVQPTRNPA- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC ++LT DHV+P + GGE WEN+VAAC CN RKG K
Sbjct: 81 ---FTRFNVFLRDRFECQYCGEHDDLTFDHVIPRAHGGETTWENVVAACSPCNLRKGSKL 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++A M + P P D+
Sbjct: 138 PKQAAMFPHQKPYQPTVQDL 157
>gi|328541713|ref|YP_004301822.1| HNH endonuclease domain-containing protein [Polymorphum gilvum
SL003B-26A1]
gi|326411465|gb|ADZ68528.1| HNH endonuclease domain protein [Polymorphum gilvum SL003B-26A1]
Length = 185
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 84/140 (60%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ F+++ +++ YD + SP+ F +P+V+ ++ VK R
Sbjct: 22 LSYYPLSLWSWQDAVKAVFLDRVNIVSEYDTLVRSPSFEFRLPSVVSLK---TFVKPSR- 77
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC S+E+LT DH++P SRGG+ W+N++ AC CN RK K+
Sbjct: 78 HPAFTRFNVFLRDKFQCQYCGSKEDLTFDHLIPRSRGGQTTWQNVITACSPCNLRKANKS 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
E+ +M +P P D+
Sbjct: 138 CEQLDMWPMHMPFQPTIQDL 157
>gi|241206532|ref|YP_002977628.1| HNH endonuclease [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240860422|gb|ACS58089.1| HNH endonuclease [Rhizobium leguminosarum bv. trifolii WSM1325]
Length = 185
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ Y+ +++SP+ S +P+V+ ++ +Q +
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIIAEYEHSVSSPSFSMRLPSVVCLKTYVQPSRNPA- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC + ++LT DHV+P + GGE WEN+VAAC CN RKG K
Sbjct: 81 ---FTRFNVFLRDRFECQYCGAHDDLTFDHVIPRAHGGETTWENVVAACSPCNLRKGSKL 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++A+M ++ P P D+
Sbjct: 138 PKQASMFPAQKPYQPTVQDL 157
>gi|312115660|ref|YP_004013256.1| HNH endonuclease [Rhodomicrobium vannielii ATCC 17100]
gi|311220789|gb|ADP72157.1| HNH endonuclease [Rhodomicrobium vannielii ATCC 17100]
Length = 191
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 88/152 (57%), Gaps = 9/152 (5%)
Query: 98 FRGLVLD-----ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRV 152
F LVL+ +SY P+++ W+ I F+++ +++ +YD+ + SPN +P+V+ +
Sbjct: 16 FPALVLNADFQPLSYYPLSLWNWQETIKAVFLDRVNIVSFYDKVVRSPNAEIRLPSVVSL 75
Query: 153 RHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAA 212
+ ++ + +R N+ RD F CQYC S +LT DHV+P SRGG+ +W+N+ AA
Sbjct: 76 KTFVKPA----LYPAFTRFNVFLRDKFQCQYCGSPHDLTFDHVIPRSRGGQTRWDNVTAA 131
Query: 213 CFKCNSRKGKKTLEEANMQLSRVPKAPKDYDI 244
C CN +KG K +A M + P P +++
Sbjct: 132 CAPCNLKKGGKMPAKAKMFPALKPYRPTVHEL 163
>gi|333990076|ref|YP_004522690.1| hypothetical protein JDM601_1436 [Mycobacterium sp. JDM601]
gi|333486044|gb|AEF35436.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length = 211
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 90/153 (58%), Gaps = 7/153 (4%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLL 156
R L+L+ ++ P+ + +RAI + KADV+ + I+S S +P+V+R+R +
Sbjct: 45 RVLLLNSTFEPLTALPLRRAIVMLICGKADVVHDDPAGPVIHSATRSVVVPSVIRLRSYV 104
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R RI L+R LM+RD +C YC + + T+DHVVP SRGG+ WEN VAAC C
Sbjct: 105 RVPYRARIP--LTRAALMHRDRHSCAYCGGKAD-TVDHVVPRSRGGDHSWENCVAACSAC 161
Query: 217 NSRKGKKTLEEANMQLSRVPKAPK--DYDILAI 247
N RK + L E L VP +PK + +LA+
Sbjct: 162 NHRKADRLLAELGWTLRLVPTSPKGQHWRLLAV 194
>gi|406706860|ref|YP_006757213.1| HNH endonuclease [alpha proteobacterium HIMB5]
gi|406652636|gb|AFS48036.1| HNH endonuclease [alpha proteobacterium HIMB5]
Length = 188
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ + F+++ ++ YD+ I SP+ S +P+V+ ++ + +
Sbjct: 25 LSYYPLSLWSWQDTVKSVFLDRVIIVSKYDREIRSPSFSMQLPSVIALKDYIV----PQA 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
K + +R N+ RD F+CQYC S+E LT DH++P S+GGE W+N+V AC CN +KG K
Sbjct: 81 KPSFTRFNVFLRDKFSCQYCGSKEELTFDHLLPRSKGGETNWDNVVTACSTCNVKKGGKL 140
Query: 225 LEEANMQLSRVPKAPKDYDI 244
L+ + M+L++ P P D+
Sbjct: 141 LKFSGMKLNQHPYRPSTEDL 160
>gi|209551129|ref|YP_002283046.1| HNH endonuclease [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|424886574|ref|ZP_18310182.1| restriction endonuclease [Rhizobium leguminosarum bv. trifolii
WSM2012]
gi|424897225|ref|ZP_18320799.1| restriction endonuclease [Rhizobium leguminosarum bv. trifolii
WSM2297]
gi|424916606|ref|ZP_18339970.1| restriction endonuclease [Rhizobium leguminosarum bv. trifolii
WSM597]
gi|209536885|gb|ACI56820.1| HNH endonuclease [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|392852782|gb|EJB05303.1| restriction endonuclease [Rhizobium leguminosarum bv. trifolii
WSM597]
gi|393175925|gb|EJC75967.1| restriction endonuclease [Rhizobium leguminosarum bv. trifolii
WSM2012]
gi|393181452|gb|EJC81491.1| restriction endonuclease [Rhizobium leguminosarum bv. trifolii
WSM2297]
Length = 185
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ Y+ +++SP+ S +P+V+ ++ +Q +
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIIAEYEHSVSSPSFSMRLPSVVCLKTYVQPSRNPA- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC + ++LT DHV+P + GGE WEN+VAAC CN RKG K
Sbjct: 81 ---FTRFNVFLRDRFECQYCGAHDDLTFDHVIPRAHGGETTWENVVAACSPCNLRKGSKL 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++A+M ++ P P D+
Sbjct: 138 PKQASMFPAQKPYQPTVQDL 157
>gi|294010782|ref|YP_003544242.1| HNH endonuclease family protein [Sphingobium japonicum UT26S]
gi|390168809|ref|ZP_10220762.1| HNH endonuclease family protein [Sphingobium indicum B90A]
gi|292674112|dbj|BAI95630.1| HNH endonuclease family protein [Sphingobium japonicum UT26S]
gi|389588597|gb|EIM66639.1| HNH endonuclease family protein [Sphingobium indicum B90A]
Length = 188
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 82/140 (58%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ D++ Y++ ++SP+ IP+V+ ++ Q VK
Sbjct: 25 LSYYPLSLWPWQTAIKAVFLDRVDIVASYERQVHSPSLRMQIPSVIALK---QYVKPSE- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC S +LT DHV+P GG WEN+ AC CN +KG +T
Sbjct: 81 HPAFTRFNLFLRDKFACQYCGSPNDLTFDHVIPRRAGGRTTWENVATACSPCNLKKGGRT 140
Query: 225 LEEANMQLSRVPKAPKDYDI 244
+EA+MQL P P + +
Sbjct: 141 PKEAHMQLHVTPIRPTSWQL 160
>gi|403508019|ref|YP_006639657.1| HNH endonuclease family protein [Nocardiopsis alba ATCC BAA-2165]
gi|402799841|gb|AFR07251.1| HNH endonuclease family protein [Nocardiopsis alba ATCC BAA-2165]
Length = 166
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 86/143 (60%), Gaps = 7/143 (4%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT---INSPNGSFYIPAVLRVRHLLQ 157
L+L+ S+ P+ + +RAI L EKA+V+ + D T ++S S+ +P+V+R+R +
Sbjct: 2 LLLNASFEPLTTLPLRRAILLVLREKAEVV-HEDGTGAMLHSATRSYDVPSVIRLRRYIS 60
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
V RR+ L+R LM RD TC YC + TIDHV+P SRGG WEN+VAAC CN
Sbjct: 61 VPYSRRVP--LTRVALMRRDRHTCGYCGKKAE-TIDHVIPRSRGGAHVWENVVAACKPCN 117
Query: 218 SRKGKKTLEEANMQLSRVPKAPK 240
RK K L+E +L PK PK
Sbjct: 118 HRKADKFLDEIGWELHITPKVPK 140
>gi|304394223|ref|ZP_07376146.1| HNH endonuclease [Ahrensia sp. R2A130]
gi|303293663|gb|EFL88040.1| HNH endonuclease [Ahrensia sp. R2A130]
Length = 186
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 84/141 (59%), Gaps = 5/141 (3%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ YD ++SP+ +P+V+ ++ +Q +
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIVSEYDAAVSSPSFQMKLPSVVSLKQYIQPQRNPA- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRE-NLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKK 223
+R NL RD FTCQYC E +LT DH++P S GG+ WEN++ AC CN RKG K
Sbjct: 81 ---FTRFNLFLRDGFTCQYCGVEEKDLTFDHLIPRSLGGQTTWENIITACSPCNLRKGGK 137
Query: 224 TLEEANMQLSRVPKAPKDYDI 244
++A M +R P P +D+
Sbjct: 138 LAKDAGMTPNRKPWVPTVHDL 158
>gi|62290519|ref|YP_222312.1| HNH endonuclease family protein [Brucella abortus bv. 1 str. 9-941]
gi|82700435|ref|YP_415009.1| HNH endonuclease [Brucella melitensis biovar Abortus 2308]
gi|189024743|ref|YP_001935511.1| HNH endonuclease [Brucella abortus S19]
gi|237816026|ref|ZP_04595022.1| HNH endonuclease family protein [Brucella abortus str. 2308 A]
gi|260547231|ref|ZP_05822969.1| HNH endonuclease [Brucella abortus NCTC 8038]
gi|260755350|ref|ZP_05867698.1| HNH endonuclease [Brucella abortus bv. 6 str. 870]
gi|260758572|ref|ZP_05870920.1| HNH endonuclease [Brucella abortus bv. 4 str. 292]
gi|260762404|ref|ZP_05874741.1| HNH endonuclease [Brucella abortus bv. 2 str. 86/8/59]
gi|260884366|ref|ZP_05895980.1| HNH endonuclease [Brucella abortus bv. 9 str. C68]
gi|297248923|ref|ZP_06932631.1| 5-methylcytosine-specific restriction protein A [Brucella abortus
bv. 5 str. B3196]
gi|376272626|ref|YP_005151204.1| 5-methylcytosine-specific restriction protein A [Brucella abortus
A13334]
gi|423169255|ref|ZP_17155956.1| hypothetical protein M17_02943 [Brucella abortus bv. 1 str. NI435a]
gi|423172596|ref|ZP_17159269.1| hypothetical protein M19_03127 [Brucella abortus bv. 1 str. NI474]
gi|423175732|ref|ZP_17162400.1| hypothetical protein M1A_03127 [Brucella abortus bv. 1 str. NI486]
gi|423178710|ref|ZP_17165353.1| hypothetical protein M1E_02949 [Brucella abortus bv. 1 str. NI488]
gi|423181842|ref|ZP_17168481.1| hypothetical protein M1G_02940 [Brucella abortus bv. 1 str. NI010]
gi|423185157|ref|ZP_17171792.1| hypothetical protein M1I_03124 [Brucella abortus bv. 1 str. NI016]
gi|423188312|ref|ZP_17174924.1| hypothetical protein M1K_03128 [Brucella abortus bv. 1 str. NI021]
gi|423191450|ref|ZP_17178057.1| hypothetical protein M1M_03129 [Brucella abortus bv. 1 str. NI259]
gi|62196651|gb|AAX74951.1| HNH endonuclease family protein [Brucella abortus bv. 1 str. 9-941]
gi|82616536|emb|CAJ11614.1| HNH endonuclease:HNH nuclease [Brucella melitensis biovar Abortus
2308]
gi|189020315|gb|ACD73037.1| HNH endonuclease [Brucella abortus S19]
gi|237788689|gb|EEP62901.1| HNH endonuclease family protein [Brucella abortus str. 2308 A]
gi|260095596|gb|EEW79474.1| HNH endonuclease [Brucella abortus NCTC 8038]
gi|260668890|gb|EEX55830.1| HNH endonuclease [Brucella abortus bv. 4 str. 292]
gi|260672830|gb|EEX59651.1| HNH endonuclease [Brucella abortus bv. 2 str. 86/8/59]
gi|260675458|gb|EEX62279.1| HNH endonuclease [Brucella abortus bv. 6 str. 870]
gi|260873894|gb|EEX80963.1| HNH endonuclease [Brucella abortus bv. 9 str. C68]
gi|297174056|gb|EFH33413.1| 5-methylcytosine-specific restriction protein A [Brucella abortus
bv. 5 str. B3196]
gi|363400232|gb|AEW17202.1| 5-methylcytosine-specific restriction protein A [Brucella abortus
A13334]
gi|374535166|gb|EHR06693.1| hypothetical protein M1A_03127 [Brucella abortus bv. 1 str. NI486]
gi|374535359|gb|EHR06885.1| hypothetical protein M19_03127 [Brucella abortus bv. 1 str. NI474]
gi|374535441|gb|EHR06963.1| hypothetical protein M17_02943 [Brucella abortus bv. 1 str. NI435a]
gi|374544597|gb|EHR16066.1| hypothetical protein M1E_02949 [Brucella abortus bv. 1 str. NI488]
gi|374544764|gb|EHR16229.1| hypothetical protein M1G_02940 [Brucella abortus bv. 1 str. NI010]
gi|374545134|gb|EHR16598.1| hypothetical protein M1I_03124 [Brucella abortus bv. 1 str. NI016]
gi|374552963|gb|EHR24385.1| hypothetical protein M1K_03128 [Brucella abortus bv. 1 str. NI021]
gi|374553155|gb|EHR24576.1| hypothetical protein M1M_03129 [Brucella abortus bv. 1 str. NI259]
Length = 190
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 84/152 (55%), Gaps = 9/152 (5%)
Query: 98 FRGLVLD-----ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRV 152
F LVL+ +SY P+++ W+ AI F+E+ ++ YDQ ++SP+ S IP+V+ +
Sbjct: 15 FPALVLNADYRPLSYYPLSLWSWQDAIKAVFLERVSIVAEYDQVVSSPSFSMRIPSVICL 74
Query: 153 RHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAA 212
+ VK R +R N+ RD F CQYC S +LT DHV+P GGE WEN+VAA
Sbjct: 75 K---DYVKPPRYPA-FTRFNVFLRDRFECQYCGSPHDLTFDHVIPRCHGGETTWENVVAA 130
Query: 213 CFKCNSRKGKKTLEEANMQLSRVPKAPKDYDI 244
C CN RKG A M + P P D+
Sbjct: 131 CSPCNLRKGGMMPAVAQMWPRQKPAMPTVQDL 162
>gi|390445777|ref|ZP_10233500.1| HNH endonuclease [Nitritalea halalkaliphila LW7]
gi|389660965|gb|EIM72600.1| HNH endonuclease [Nitritalea halalkaliphila LW7]
Length = 169
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 86/149 (57%), Gaps = 4/149 (2%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT-INSPNGSFYIPAVLRVRHLLQ 157
R L+L++ + P+ VV ++A+ L F+ KA L +Y+ I + + SF PAV+R+
Sbjct: 4 RVLILNLDHTPIAVVSAQKALVLLFLNKATSLSHYESLEIRTVSRSFRYPAVVRLDAYKN 63
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
+ R + L+R N+ RD CQYC S +NLT+DHV+P S+GG+ W NL+ AC +CN
Sbjct: 64 IPYRGVL---LTRNNVFRRDKGQCQYCGSVKNLTVDHVIPRSKGGKTSWTNLITACNRCN 120
Query: 218 SRKGKKTLEEANMQLSRVPKAPKDYDILA 246
+ KG K EE +L P P LA
Sbjct: 121 TYKGDKKPEEVGFRLPYAPYKPTLSHFLA 149
>gi|190893620|ref|YP_001980162.1| endonuclease [Rhizobium etli CIAT 652]
gi|218515988|ref|ZP_03512828.1| putative endonuclease protein [Rhizobium etli 8C-3]
gi|417097164|ref|ZP_11959076.1| putative endonuclease protein [Rhizobium etli CNPAF512]
gi|421589410|ref|ZP_16034555.1| endonuclease [Rhizobium sp. Pop5]
gi|190698899|gb|ACE92984.1| putative endonuclease protein [Rhizobium etli CIAT 652]
gi|327193381|gb|EGE60281.1| putative endonuclease protein [Rhizobium etli CNPAF512]
gi|403705646|gb|EJZ21183.1| endonuclease [Rhizobium sp. Pop5]
Length = 185
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 86/140 (61%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ Y+ +++SP+ S +P+V+ ++ +Q +
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIIAEYEHSVSSPSFSMRLPSVVCLKTYVQPSRNPA- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC + ++LT DHV+P + GGE WEN+VAAC CN RKG K
Sbjct: 81 ---FTRFNVFLRDRFECQYCGAHDDLTFDHVIPRAHGGETTWENVVAACSPCNLRKGSKL 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++A M ++ P P D+
Sbjct: 138 PKQAGMFPAQKPYQPTVQDL 157
>gi|15966388|ref|NP_386741.1| hypothetical protein SMc00737 [Sinorhizobium meliloti 1021]
gi|334317392|ref|YP_004550011.1| HNH endonuclease [Sinorhizobium meliloti AK83]
gi|384530518|ref|YP_005714606.1| HNH endonuclease [Sinorhizobium meliloti BL225C]
gi|407721702|ref|YP_006841364.1| hypothetical protein BN406_02493 [Sinorhizobium meliloti Rm41]
gi|418403481|ref|ZP_12976969.1| HNH endonuclease [Sinorhizobium meliloti CCNWSX0020]
gi|433614456|ref|YP_007191254.1| Restriction endonuclease [Sinorhizobium meliloti GR4]
gi|15075659|emb|CAC47214.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
gi|333812694|gb|AEG05363.1| HNH endonuclease [Sinorhizobium meliloti BL225C]
gi|334096386|gb|AEG54397.1| HNH endonuclease [Sinorhizobium meliloti AK83]
gi|359502541|gb|EHK75115.1| HNH endonuclease [Sinorhizobium meliloti CCNWSX0020]
gi|407319934|emb|CCM68538.1| hypothetical protein BN406_02493 [Sinorhizobium meliloti Rm41]
gi|429552646|gb|AGA07655.1| Restriction endonuclease [Sinorhizobium meliloti GR4]
Length = 185
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 84/140 (60%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +L Y+ +++SP+ S +P+V+ ++ +Q +
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVTILAEYEHSVSSPSFSMRLPSVVCLKSYVQPSRHPA- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC S ++LT DHVVP + GG+ WEN+VAAC CN RKG K
Sbjct: 81 ---FTRFNVFLRDKFECQYCGSPDDLTFDHVVPRAHGGQTTWENVVAACSPCNLRKGSKL 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++A M + P P D+
Sbjct: 138 PKQAGMFPHQKPYHPTVQDL 157
>gi|427708355|ref|YP_007050732.1| HNH endonuclease [Nostoc sp. PCC 7107]
gi|427360860|gb|AFY43582.1| HNH endonuclease [Nostoc sp. PCC 7107]
Length = 172
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 90/144 (62%), Gaps = 9/144 (6%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQ---TINSPNGSFYIPAVLRVRHLLQ 157
+V +Y P+ + KRAI L KA+ L++ + ++SP+ +P +R L+
Sbjct: 13 VVFSQNYLPLCRINIKRAIVLLVTNKAEPLDFASEGGWRVHSPSLVIDVPKHIR----LK 68
Query: 158 VVKRRRIKN--NLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFK 215
+V R ++R+ ++ RD++TCQYC S + LT+DHV+P S+GG W+N+V AC +
Sbjct: 69 IVSNERTWKVPPVNRREVLRRDHYTCQYCGSSKRLTLDHVIPRSKGGLHTWDNVVIACER 128
Query: 216 CNSRKGKKTLEEANMQLSRVPKAP 239
CNSRKG +TL EA MQL ++PKAP
Sbjct: 129 CNSRKGDRTLFEAGMQLRKIPKAP 152
>gi|424872552|ref|ZP_18296214.1| restriction endonuclease [Rhizobium leguminosarum bv. viciae
WSM1455]
gi|393168253|gb|EJC68300.1| restriction endonuclease [Rhizobium leguminosarum bv. viciae
WSM1455]
Length = 185
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 86/140 (61%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ Y+ +++SP+ S +P+V+ ++ +Q +
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIIAEYEHSVSSPSFSMRLPSVVCLKTYVQPSRNPA- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC + ++LT DHV+P + GGE WEN+VAAC CN RKG K
Sbjct: 81 ---FTRFNVFLRDRFECQYCGAHDDLTFDHVIPRAHGGETTWENVVAACSPCNLRKGSKL 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++A M ++ P P D+
Sbjct: 138 PKQAGMFPAQKPYQPTVQDL 157
>gi|408672853|ref|YP_006872601.1| HNH endonuclease [Emticicia oligotrophica DSM 17448]
gi|387854477|gb|AFK02574.1| HNH endonuclease [Emticicia oligotrophica DSM 17448]
Length = 169
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 88/146 (60%), Gaps = 16/146 (10%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNG-------SFYIPAVLRVR 153
LVL+ Y +++ +A L +++KA+++ +SP G S+ +P+V+R+
Sbjct: 6 LVLNADYSALSICTVPKAFLLVYLDKAELVS------DSPKGMLRTVDKSYPLPSVIRLN 59
Query: 154 HLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAAC 213
H + + + + LSR+N+ RD C YC S E+LT+DHVVP SRGG+ W+NLVAAC
Sbjct: 60 HYVSLPFKGVM---LSRQNVFRRDGNKCVYCGSHEDLTLDHVVPKSRGGKTNWDNLVAAC 116
Query: 214 FKCNSRKGKKTLEEANMQLSRVPKAP 239
+CNSRKG T EEA + L R P P
Sbjct: 117 RRCNSRKGDLTPEEAGLSLPRKPYKP 142
>gi|108758899|ref|YP_629743.1| HNH endonuclease domain-containing protein [Myxococcus xanthus DK
1622]
gi|108462779|gb|ABF87964.1| HNH endonuclease domain protein [Myxococcus xanthus DK 1622]
Length = 180
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 93/175 (53%), Gaps = 14/175 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYY-DQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL S+ PV V W+RA+ L K +V+E Y D+ + S +P+V+R ++ +
Sbjct: 4 LVLSQSFEPVARVPWQRAVMLIVQGKVEVVEEYEDRVVRSVTVEIRMPSVIR---FIRGL 60
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+RR SR+N+ RD+ CQYC +R T DHV+P ++GG+ WEN+V AC C
Sbjct: 61 RRRPKGVKFSRENVYLRDHCRCQYCGIKVTRPEATYDHVLPRAQGGKTSWENIVIACVPC 120
Query: 217 NSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
N +KG +T E+A M L P PK + A KG P+ W ++L
Sbjct: 121 NQKKGNRTPEQARMALRTAPMKPKK-------VPEAMHLTFLFEKGMPMSWAKFL 168
>gi|393767395|ref|ZP_10355943.1| HNH endonuclease [Methylobacterium sp. GXF4]
gi|392727105|gb|EIZ84422.1| HNH endonuclease [Methylobacterium sp. GXF4]
Length = 182
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 84/143 (58%), Gaps = 7/143 (4%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ WK A F+++ ++ YD SP+ + +P+V+ +++ + + +
Sbjct: 16 LSYNPLSLWSWKDAFTALFLDRVTLVASYDVEARSPSRALRVPSVVALKNYVTLAR---- 71
Query: 165 KNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
+R N+ RD F+CQYC R LT DHVVP SRGG WEN+VAAC CN RK
Sbjct: 72 SPAFTRYNIYLRDGFSCQYCGLRLPSGGLTFDHVVPRSRGGLSSWENVVAACSPCNLRKA 131
Query: 222 KKTLEEANMQLSRVPKAPKDYDI 244
+T +EA+M L+ P+ P Y++
Sbjct: 132 NRTPQEADMPLATEPRRPTRYEL 154
>gi|254437269|ref|ZP_05050763.1| HNH endonuclease domain protein [Octadecabacter antarcticus 307]
gi|198252715|gb|EDY77029.1| HNH endonuclease domain protein [Octadecabacter antarcticus 307]
Length = 204
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 81/135 (60%), Gaps = 4/135 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ ++ + D++ YD+ SP+ IP+V+ +R ++ K
Sbjct: 41 LSYYPLSLWPWQDAVKAAWLNRVDIIAEYDEVARSPSMEIRIPSVVVLRDFVKPQK---- 96
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
K +R NL RD F+CQYC + +LT DHVVP + GG W+N+VAAC +CN KG K+
Sbjct: 97 KVAFTRFNLFLRDEFSCQYCGTTGDLTFDHVVPRASGGITSWKNVVAACSRCNLHKGSKS 156
Query: 225 LEEANMQLSRVPKAP 239
L + + L + P+ P
Sbjct: 157 LHRSGLSLRKPPRQP 171
>gi|441213000|ref|ZP_20975568.1| hypothetical protein D806_4736 [Mycobacterium smegmatis MKD8]
gi|440625897|gb|ELQ87740.1| hypothetical protein D806_4736 [Mycobacterium smegmatis MKD8]
Length = 164
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 83/141 (58%), Gaps = 5/141 (3%)
Query: 102 VLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
+L+ +Y P+ + +RA+ + KADV+ + I+S + S +P+V+R+R ++V
Sbjct: 1 MLNATYEPLTALPLRRAVIMVVCGKADVVHDDPTSPVIHSASRSIVVPSVIRLRTYVRVP 60
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R R+ ++R LM+RD F C YC R + T+DHVVP SRGGE WEN VAAC CN R
Sbjct: 61 YRARVP--MTRAALMHRDRFRCAYCGGRAD-TVDHVVPRSRGGEHSWENCVAACATCNHR 117
Query: 220 KGKKTLEEANMQLSRVPKAPK 240
K + L E L VP PK
Sbjct: 118 KADRLLTELGWTLRCVPMPPK 138
>gi|86359367|ref|YP_471259.1| endonuclease [Rhizobium etli CFN 42]
gi|86283469|gb|ABC92532.1| putative endonuclease protein [Rhizobium etli CFN 42]
Length = 185
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 88/150 (58%), Gaps = 9/150 (6%)
Query: 100 GLVLDISYRPVNVV-----CWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRH 154
LVL+ YRP++ W+ AI F+++ +++ Y+ +++SP+ S +P+V+ ++
Sbjct: 12 ALVLNADYRPLSYYPLSPWSWQDAIKAVFLDRVNIIAEYEHSVSSPSFSMRLPSVVCLKT 71
Query: 155 LLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACF 214
+Q + +R N+ RD F CQYC S ++LT DHV+P + GGE WEN+VAAC
Sbjct: 72 YVQPSRNPA----FTRFNVFLRDRFECQYCGSNDDLTFDHVIPRAHGGETTWENVVAACS 127
Query: 215 KCNSRKGKKTLEEANMQLSRVPKAPKDYDI 244
CN RKG K ++A M ++ P P D+
Sbjct: 128 PCNLRKGSKLPKQAGMFPAQKPYQPTVQDL 157
>gi|339503912|ref|YP_004691332.1| HNH endonuclease-like protein [Roseobacter litoralis Och 149]
gi|338757905|gb|AEI94369.1| HNH endonuclease-like protein [Roseobacter litoralis Och 149]
Length = 194
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 80/135 (59%), Gaps = 4/135 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ ++++ D++ YD + SP+ IP+V+ ++ ++ KR
Sbjct: 31 LSYYPLSLWPWQDAVKAAWLDRVDIVAEYDDIVRSPSTEIRIPSVVVLKDYVKPQKR--- 87
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC +R +LT DHVVP + GG W+N+VAAC CN +KG K
Sbjct: 88 -VAFTRFNLFLRDEFRCQYCGARGDLTFDHVVPRASGGVTSWQNVVAACSPCNLKKGAKP 146
Query: 225 LEEANMQLSRVPKAP 239
L + L + P+ P
Sbjct: 147 LHRTGLSLRKPPRQP 161
>gi|398385160|ref|ZP_10543185.1| restriction endonuclease [Sphingobium sp. AP49]
gi|397721092|gb|EJK81642.1| restriction endonuclease [Sphingobium sp. AP49]
Length = 188
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 80/140 (57%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+E+ D++ Y++ ++SP+ IP+V+ ++ + R
Sbjct: 25 LSYYPLSLWPWQTAIKAVFLERVDIVSSYEREVHSPSLLMKIPSVIALKQYV----RPSE 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F+CQYC + +LT DHVVP GG WEN+ AC CN +KG +T
Sbjct: 81 HPAFTRFNLFLRDKFSCQYCGTTHDLTFDHVVPRRAGGRTTWENVATACSPCNLKKGGRT 140
Query: 225 LEEANMQLSRVPKAPKDYDI 244
EA MQL P P + +
Sbjct: 141 PREAGMQLHVQPIRPTSWQL 160
>gi|383453402|ref|YP_005367391.1| HNH endonuclease domain-containing protein [Corallococcus
coralloides DSM 2259]
gi|380728026|gb|AFE04028.1| HNH endonuclease domain-containing protein [Corallococcus
coralloides DSM 2259]
Length = 180
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 94/176 (53%), Gaps = 16/176 (9%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYY-DQTINSPNGSFYIPAVLR-VRHLLQV 158
LVL SY PV + W+RA+ L K +V+E Y D+ I S +P+V+R VR L +
Sbjct: 4 LVLSQSYEPVARIPWQRAVMLLVQGKVEVVEEYEDRVIRSVTVELRMPSVIRFVRALWKG 63
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACFK 215
+ R SR+N+ RD CQYC +R T DHV+P ++GG W+N+V AC
Sbjct: 64 PRGVR----FSRENVYQRDQCRCQYCGRKVTRPEATYDHVLPRAQGGRTSWDNIVIACVP 119
Query: 216 CNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
CN +KG +T +A M L VP PK L A + + KG P+ WR++L
Sbjct: 120 CNQKKGNRTPAQARMTLRTVPAKPKR-------LPDALVVSFLMEKGLPLSWRKFL 168
>gi|384537218|ref|YP_005721303.1| HNH endonuclease [Sinorhizobium meliloti SM11]
gi|336034110|gb|AEH80042.1| HNH endonuclease [Sinorhizobium meliloti SM11]
Length = 209
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 84/140 (60%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +L Y+ +++SP+ S +P+V+ ++ +Q +
Sbjct: 46 LSYYPLSLWSWQDAIKAVFLDRVTILAEYEHSVSSPSFSMRLPSVVCLKSYVQPSRHPA- 104
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC S ++LT DHVVP + GG+ WEN+VAAC CN RKG K
Sbjct: 105 ---FTRFNVFLRDKFECQYCGSPDDLTFDHVVPRAHGGQTTWENVVAACSPCNLRKGSKL 161
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++A M + P P D+
Sbjct: 162 PKQAGMFPHQKPYHPTVQDL 181
>gi|271968570|ref|YP_003342766.1| HNH endonuclease [Streptosporangium roseum DSM 43021]
gi|270511745|gb|ACZ90023.1| HNH endonuclease [Streptosporangium roseum DSM 43021]
Length = 169
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 82/142 (57%), Gaps = 5/142 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQ--TINSPNGSFYIPAVLRVRHLLQV 158
L+L+ +Y P+ + RA+ L EKADV+ + S + + +P+V+R+R +++
Sbjct: 5 LLLNATYEPLTTLSLHRAVVLVLREKADVVHRDGRGAVFRSASRTLDVPSVIRLRRYVRI 64
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
R RI L+R LM RD++ C YC R TIDHV+P SRGG WEN VA+C CN
Sbjct: 65 PYRSRIP--LTRTALMRRDDYRCAYCGQRAE-TIDHVIPRSRGGPHTWENCVASCTSCNH 121
Query: 219 RKGKKTLEEANMQLSRVPKAPK 240
RK + LEE LS VP P+
Sbjct: 122 RKADRMLEELGWTLSVVPVVPR 143
>gi|383806641|ref|ZP_09962203.1| restriction endonuclease [Candidatus Aquiluna sp. IMCC13023]
gi|383299811|gb|EIC92424.1| restriction endonuclease [Candidatus Aquiluna sp. IMCC13023]
Length = 178
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 86/143 (60%), Gaps = 4/143 (2%)
Query: 98 FRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYD-QTINSPNGSFYIPAVLRVRHLL 156
R LVL+ Y P+ VV +KRA+ L EKA VL D + + S + F +P+V+ + +
Sbjct: 11 MRTLVLNAGYEPLAVVSFKRALVLVLNEKATVLAGIDNEVVRSASQEFEMPSVILLSRYV 70
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
++ RR+ +SR+ ++ RD+ C YC+ N TIDH++P SRGG+ WENLVA C +C
Sbjct: 71 RIPNARRVP--VSRRGVLRRDSQRCGYCAGPAN-TIDHIMPKSRGGKDTWENLVACCLEC 127
Query: 217 NSRKGKKTLEEANMQLSRVPKAP 239
N+ KG +T E L +PK P
Sbjct: 128 NNSKGNRTPAEIGWNLKVLPKMP 150
>gi|358463036|ref|ZP_09173130.1| HNH endonuclease [Frankia sp. CN3]
gi|357070825|gb|EHI80477.1| HNH endonuclease [Frankia sp. CN3]
Length = 171
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 97/172 (56%), Gaps = 14/172 (8%)
Query: 100 GLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ +Y P+ VV +RA+ L +KA V+E ++S + S +PAV+R+ ++V
Sbjct: 4 ALVLNATYEPLCVVSQRRALILVLTDKAVVVESGGLVLHSASASVEVPAVVRLARFVRVP 63
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R ++ L+RK ++ RD+ C YC + ++DHV+P SRGG WEN+VAAC +CN
Sbjct: 64 YRSQVP--LTRKGVLARDHHRCVYCGAPAT-SLDHVIPRSRGGPHVWENVVAACGRCNHV 120
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
K + + + +L P+AP + AA R+L R+ P W QYL
Sbjct: 121 KADRAVADLGWRLRTAPRAP----------SGAAWRILGSRRMDP-RWSQYL 161
>gi|296270505|ref|YP_003653137.1| HNH endonuclease [Thermobispora bispora DSM 43833]
gi|296093292|gb|ADG89244.1| HNH endonuclease [Thermobispora bispora DSM 43833]
Length = 169
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 82/142 (57%), Gaps = 5/142 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQ--TINSPNGSFYIPAVLRVRHLLQV 158
L+L+ +Y P+ + RA+ L EKA+V+ + + + S + +P+V+R+R +++
Sbjct: 5 LLLNATYEPLTTLSLHRAVVLVLREKAEVVHHDGRGAMLRSATMTLLVPSVIRLRRYVRI 64
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
R RI L+R LM RDN+ C YC R TIDH+VP SRGG+ WEN VA+C CN
Sbjct: 65 PYRSRIP--LTRAALMRRDNYRCAYCGQRAE-TIDHIVPRSRGGQHTWENCVASCAACNH 121
Query: 219 RKGKKTLEEANMQLSRVPKAPK 240
+K K LEE L P P+
Sbjct: 122 KKADKLLEELGWTLRVTPAVPR 143
>gi|440749718|ref|ZP_20928964.1| HNH endonuclease family protein [Mariniradius saccharolyticus AK6]
gi|436482004|gb|ELP38150.1| HNH endonuclease family protein [Mariniradius saccharolyticus AK6]
Length = 168
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 84/142 (59%), Gaps = 4/142 (2%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQ-TINSPNGSFYIPAVLRVRHLLQ 157
R LVL++ + PV VV ++A+ L F++K L +Y+ I + + PAV+R+
Sbjct: 4 RVLVLNLDHSPVAVVPVQKALVLTFLDKVSCLSFYESLIIRTVTKEYRYPAVIRLNEYRN 63
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
+ + + L+R NL RD CQYC SR++LTIDH++P S+GG+ W NL+ AC +CN
Sbjct: 64 IPYKGVL---LNRANLFRRDGHECQYCGSRKHLTIDHIIPRSKGGKTNWYNLITACHRCN 120
Query: 218 SRKGKKTLEEANMQLSRVPKAP 239
KG KT ++A + L P P
Sbjct: 121 VYKGDKTPDQAGLALRTEPFKP 142
>gi|78186016|ref|YP_374059.1| HNH nuclease [Chlorobium luteolum DSM 273]
gi|78165918|gb|ABB23016.1| HNH nuclease [Chlorobium luteolum DSM 273]
Length = 168
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 97/155 (62%), Gaps = 5/155 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKA-DVLEYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ SY P+++ ++AI L F KA V + ++ I + + S+ +P+++R+ ++V
Sbjct: 7 LVLNSSYEPLSICDPQKAILLLFGGKAVPVTHHPERFICTVSKSYPMPSIVRLTVFVRVP 66
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
+R + L+RKN++ RD F CQYC + + LTIDH+ P SRGGE WENL+ AC KCN+
Sbjct: 67 YKRIM---LNRKNIIRRDRFQCQYCGRTDQQLTIDHITPRSRGGEDSWENLITACRKCNA 123
Query: 219 RKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAA 253
+KG +T +EA M L + + P + + SA+
Sbjct: 124 KKGSRTPKEAGMPLMKQAERPNHLMFMQLLTASAS 158
>gi|405382583|ref|ZP_11036364.1| restriction endonuclease [Rhizobium sp. CF142]
gi|397320989|gb|EJJ25416.1| restriction endonuclease [Rhizobium sp. CF142]
Length = 185
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 86/140 (61%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ Y+ ++SP+ S +P+V+ ++ +Q +
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIIAEYEHEVSSPSFSMRLPSVVCLKTYVQPSRNPA- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC + ++LT DHV+P + GGE WEN+VAAC CN RKG K
Sbjct: 81 ---FTRFNVFLRDRFECQYCGAHDDLTFDHVIPRAHGGETTWENVVAACSPCNLRKGSKL 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++A+M ++ P P D+
Sbjct: 138 PKQASMFPAQKPYQPTVQDL 157
>gi|348171844|ref|ZP_08878738.1| HNH endonuclease [Saccharopolyspora spinosa NRRL 18395]
Length = 216
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 84/144 (58%), Gaps = 5/144 (3%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLL 156
R L+L+ ++ P+ + +RAI L KA+V+ + ++S S +P+V+R+ + +
Sbjct: 50 RVLLLNTTFEPLTALPLRRAIVLLVCGKAEVVHGDSAGMVLHSATASVEVPSVIRLSNFV 109
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R R+ L+R LM RDN+ C YC +R TIDHVVP SR G WEN VA C KC
Sbjct: 110 RVPYRGRVP--LTRAALMLRDNYRCVYCGARAE-TIDHVVPRSRSGPHTWENCVACCTKC 166
Query: 217 NSRKGKKTLEEANMQLSRVPKAPK 240
N RK KTL E +L P AP+
Sbjct: 167 NHRKADKTLNELGWRLPVAPHAPR 190
>gi|163845229|ref|YP_001622884.1| hypothetical protein BSUIS_B1123 [Brucella suis ATCC 23445]
gi|163675952|gb|ABY40062.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
Length = 190
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 79/140 (56%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+E+ ++ YDQ ++SP+ S IP+V+ ++ + + +
Sbjct: 27 LSYYPLSLWSWQDAIKAVFLERVSIVAEYDQVVSSPSFSMRIPSVICLKDYV----KPPL 82
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC S +LT DHV+P GGE WEN+VAAC CN RKG
Sbjct: 83 YPAFTRFNVFLRDRFECQYCGSPHDLTFDHVIPRCHGGETTWENVVAACSPCNLRKGGMM 142
Query: 225 LEEANMQLSRVPKAPKDYDI 244
A M + P P D+
Sbjct: 143 PAVAQMWPRQKPAMPTAQDL 162
>gi|399067031|ref|ZP_10748711.1| restriction endonuclease [Novosphingobium sp. AP12]
gi|398027446|gb|EJL20997.1| restriction endonuclease [Novosphingobium sp. AP12]
Length = 202
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 82/140 (58%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI +E+ D++ Y++ ++SP+ + IP+V+ +R Q V+
Sbjct: 39 LSYYPLSLWPWQTAIKAVVLERVDIISSYERAVHSPSWTMQIPSVIALR---QYVRPSEF 95
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F+CQYC S NLT DHVVP GG WEN++ AC CN RKG +T
Sbjct: 96 PA-FTRFNLFLRDRFSCQYCGSPHNLTFDHVVPRRLGGRTSWENILTACSPCNLRKGGRT 154
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++A+M P P + +
Sbjct: 155 PKQAHMPPLVQPIRPTSWQL 174
>gi|357021841|ref|ZP_09084072.1| HNH endonuclease [Mycobacterium thermoresistibile ATCC 19527]
gi|356479589|gb|EHI12726.1| HNH endonuclease [Mycobacterium thermoresistibile ATCC 19527]
Length = 167
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 83/142 (58%), Gaps = 5/142 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLLQV 158
L+L+ +Y P+ + +RA+ + KADV+ + I+S + +P+V+R+R ++V
Sbjct: 2 LLLNSTYEPLTALTMRRALVMVLCGKADVVHDDPNGPVIHSATRALVMPSVIRLRTYVRV 61
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
R R+ ++R LM+RD F C YC + + TIDHVVP SRGG WEN VAAC CN
Sbjct: 62 PYRARVP--MTRAALMHRDRFRCAYCGGKAD-TIDHVVPRSRGGAHSWENCVAACSACNH 118
Query: 219 RKGKKTLEEANMQLSRVPKAPK 240
RK + L E L VP+ PK
Sbjct: 119 RKADRLLSELGWTLRAVPRPPK 140
>gi|409439253|ref|ZP_11266312.1| putative HNH endonuclease:HNH nuclease [Rhizobium mesoamericanum
STM3625]
gi|408749158|emb|CCM77491.1| putative HNH endonuclease:HNH nuclease [Rhizobium mesoamericanum
STM3625]
Length = 185
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 85/140 (60%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ Y+ +++SP+ S +P+V+ ++ +Q +
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIIAEYEHSVSSPSFSMRLPSVVCLKTYVQPSRNPA- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC ++LT DHV+P + GGE WEN+VAAC CN RKG K
Sbjct: 81 ---FTRFNVFLRDKFECQYCGEHDDLTFDHVIPRAHGGETTWENVVAACSPCNLRKGSKL 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++A M ++ P P D+
Sbjct: 138 PKQAGMFPNQKPYQPTVQDL 157
>gi|226360516|ref|YP_002778294.1| hypothetical protein ROP_11020 [Rhodococcus opacus B4]
gi|226239001|dbj|BAH49349.1| hypothetical protein [Rhodococcus opacus B4]
Length = 223
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 89/152 (58%), Gaps = 7/152 (4%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLL 156
R L+L+++Y P+ + +RA+ L KAD + + + ++S S +P+V+R+R+ +
Sbjct: 57 RVLLLNVTYEPLTALPARRAVVLMTCGKADTVHEDPHAPVVHSEQWSVQVPSVIRLRNYV 116
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R R+ ++R LM+RD F C YC S+ T+DHVVP SRGGE WEN VA C C
Sbjct: 117 RVPYRARVP--MTRAALMHRDRFRCAYCGSKAE-TVDHVVPRSRGGEHSWENCVACCAPC 173
Query: 217 NSRKGKKTLEEANMQL--SRVPKAPKDYDILA 246
N RK K L E L S VP + + +LA
Sbjct: 174 NHRKADKLLSELGWTLRASLVPPSGPHWRLLA 205
>gi|15827641|ref|NP_301904.1| hypothetical protein ML1254 [Mycobacterium leprae TN]
gi|221230118|ref|YP_002503534.1| hypothetical protein MLBr_01254 [Mycobacterium leprae Br4923]
gi|4883448|emb|CAB43161.1| hypothetical protein MLCB1610.15 [Mycobacterium leprae]
gi|13093192|emb|CAC31635.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219933225|emb|CAR71349.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length = 215
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 92/175 (52%), Gaps = 15/175 (8%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEY--YDQTINSPNGSFYIPAVLRVRHLL 156
R L+L+ +Y P+ + +RAI + KADV+ ++S S +P+V+++R +
Sbjct: 49 RVLLLNSTYEPLTALPTRRAIIMVICGKADVVHVDPAGPVVHSATRSITVPSVIQLRSYV 108
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R R+ ++R LM+RD F C YC ++ + T+DHVVP SRGG+ WEN VA C C
Sbjct: 109 RVPYRARVP--MTRAALMHRDRFCCAYCGAKAD-TVDHVVPRSRGGDHSWENCVACCSTC 165
Query: 217 NSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
N RKG K L E L R P P T R+L K W +YL
Sbjct: 166 NHRKGDKLLTELGWVLRRTPVLP----------TGQHWRLLSTVKELDPAWARYL 210
>gi|374850927|dbj|BAL53902.1| HNH endonuclease [uncultured prokaryote]
Length = 161
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 83/140 (59%), Gaps = 4/140 (2%)
Query: 102 VLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKR 161
+L+ +Y P+NV +RA+ L KA++L I + + P+V+R+ +++ R
Sbjct: 1 MLNANYEPLNVCNTRRALGLILAGKAEILVNGRGVIRTAYNEYPCPSVIRMGYMIH---R 57
Query: 162 RRIKNNLSRKNLMYRDNFTCQYCSSRE-NLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+++ + RD +TCQYC +LTIDHV+P RGG WENLV AC CN RK
Sbjct: 58 PRPRVKLTKREIFRRDGYTCQYCGQESPHLTIDHVIPRHRGGTHSWENLVTACPACNRRK 117
Query: 221 GKKTLEEANMQLSRVPKAPK 240
G +TL+EA M L R P P+
Sbjct: 118 GGRTLQEAQMVLRRRPVEPQ 137
>gi|427739752|ref|YP_007059296.1| restriction endonuclease [Rivularia sp. PCC 7116]
gi|427374793|gb|AFY58749.1| restriction endonuclease [Rivularia sp. PCC 7116]
Length = 172
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 87/144 (60%), Gaps = 9/144 (6%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT---INSPNGSFYIPAVLRVRHLLQ 157
+V +Y P+ V KRA+ L +KA+ L+ ++ I+SPN Y+P +R L+
Sbjct: 12 VVFSQNYLPLCRVNIKRAVVLLVTQKAEPLDITTESGWYISSPNLIVYVPKHIR----LK 67
Query: 158 VVKRRRIKN--NLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFK 215
+ R R ++R+ ++ RD +CQYC S +NLT+DHV+P SRGG WEN+VAACF
Sbjct: 68 IASRERAWKLPPVNRRGILRRDRNSCQYCGSNKNLTLDHVMPRSRGGRHTWENVVAACFN 127
Query: 216 CNSRKGKKTLEEANMQLSRVPKAP 239
CNS K +T +EA M L PKAP
Sbjct: 128 CNSCKSNRTPKEAGMPLRTKPKAP 151
>gi|116254047|ref|YP_769885.1| endonuclease [Rhizobium leguminosarum bv. viciae 3841]
gi|115258695|emb|CAK09799.1| putative endonuclease family protein [Rhizobium leguminosarum bv.
viciae 3841]
Length = 185
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 85/140 (60%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ Y+ +++SP+ S +P+V+ ++ +Q +
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIIAEYEHSVSSPSFSMRLPSVVCLKTYVQPSRNPA- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC + ++LT DHV P + GGE WEN+VAAC CN RKG K
Sbjct: 81 ---FTRFNVFLRDRFECQYCGAHDDLTFDHVTPRAHGGETTWENVVAACSPCNLRKGSKL 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++A M ++ P P D+
Sbjct: 138 PKQAGMFPAQKPYQPTVQDL 157
>gi|307943466|ref|ZP_07658810.1| HNH endonuclease [Roseibium sp. TrichSKD4]
gi|307773096|gb|EFO32313.1| HNH endonuclease [Roseibium sp. TrichSKD4]
Length = 185
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 82/140 (58%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ I F+++ +++ YD + SP+ F IP+V+ ++ VK R
Sbjct: 22 LSYYPLSLWSWQDTIKAVFLDRVNIVSEYDAAVRSPSFEFRIPSVVSLK---TYVKPNRF 78
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC S+E LT DH++P S+GG+ W+N++ AC CN RK K+
Sbjct: 79 PA-FTRFNVFLRDKFQCQYCGSKEELTFDHLIPRSKGGQTTWDNVITACSPCNLRKANKS 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++ NM +P P D+
Sbjct: 138 CKQLNMWPMHMPFQPTIQDL 157
>gi|114570900|ref|YP_757580.1| HNH endonuclease [Maricaulis maris MCS10]
gi|114341362|gb|ABI66642.1| HNH endonuclease [Maricaulis maris MCS10]
Length = 188
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 83/142 (58%), Gaps = 6/142 (4%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P++ W+ AI F+E+ V+ +YD+ ++SP+ ++P+V+ +R V + R
Sbjct: 23 LSYWPLSTWPWQEAIKNVFLERVAVVSHYDEVVHSPSFEMHVPSVVALR---DYVHQERT 79
Query: 165 KNNLSRKNLMYRDNFTCQYCSSR--ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGK 222
+R N+ RD F C YC E LT DHV+P GG+ WEN+VAAC CN +KG
Sbjct: 80 PA-FTRYNVWLRDGFKCVYCGKHGVEQLTFDHVIPRRAGGKTSWENIVAACGPCNLKKGG 138
Query: 223 KTLEEANMQLSRVPKAPKDYDI 244
+T EA M L R P+ P +++
Sbjct: 139 RTPREAGMPLPRPPQRPNMHEL 160
>gi|442318514|ref|YP_007358535.1| HNH endonuclease domain-containing protein [Myxococcus stipitatus
DSM 14675]
gi|441486156|gb|AGC42851.1| HNH endonuclease domain-containing protein [Myxococcus stipitatus
DSM 14675]
Length = 180
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 92/176 (52%), Gaps = 16/176 (9%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYY-DQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL SY PV + W+RA+ L F K +V+E Y D+ + S +P+V+R +
Sbjct: 4 LVLSQSYEPVARISWQRAVMLIFQGKVEVVEEYEDRFVRSVTVEIRMPSVIR---FFRGQ 60
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACFKC 216
++ SR+N+ RD+ CQYC SR T DHV+P ++GG+ WEN+V AC C
Sbjct: 61 RKGPKGVKFSRENVYMRDHCRCQYCGLKVSRAEATYDHVIPRAQGGKTSWENVVIACVPC 120
Query: 217 NSRKGKKTLEEANMQLSRVPKAPKDY-DILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
N +KG +T E A M L P PK D+L + KG P+ W ++L
Sbjct: 121 NQKKGNRTPEHAKMALRCAPVKPKKLPDVLHLSFI--------FEKGMPMSWAKFL 168
>gi|119358265|ref|YP_912909.1| HNH endonuclease [Chlorobium phaeobacteroides DSM 266]
gi|119355614|gb|ABL66485.1| HNH endonuclease [Chlorobium phaeobacteroides DSM 266]
Length = 170
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 91/141 (64%), Gaps = 5/141 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKA-DVLEYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ SY P+++ ++A+ + F KA V + ++ I + + SF +P ++R+ ++V
Sbjct: 9 LVLNSSYAPLSICDAQKAVLMLFCGKAVSVANHPEKVICTISSSFPLPTIVRLTFFVRVP 68
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCS-SRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
++ + L+RKN++ RDNF CQYC + + +TIDH+VP S+GGE WENL+ AC CN+
Sbjct: 69 FKKIM---LNRKNILRRDNFQCQYCGRTDQPMTIDHIVPRSKGGEDSWENLITACPACNT 125
Query: 219 RKGKKTLEEANMQLSRVPKAP 239
+KG +TL EA + + P P
Sbjct: 126 KKGNRTLAEAEITALKQPTRP 146
>gi|407984444|ref|ZP_11165062.1| HNH endonuclease family protein [Mycobacterium hassiacum DSM 44199]
gi|407374031|gb|EKF23029.1| HNH endonuclease family protein [Mycobacterium hassiacum DSM 44199]
Length = 215
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 84/144 (58%), Gaps = 5/144 (3%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLL 156
R L+L+ +Y P+ + +RAI + KADV+ + I+S + S +P+V+R+R +
Sbjct: 49 RVLLLNSTYEPLTALPLRRAIIMLLCGKADVVHDDPNGPVIHSASRSITVPSVIRLRCYV 108
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R R+ L+R LM+RD F C YC + + T+DH+VP SRGG+ WEN VAAC C
Sbjct: 109 RVPFRARVP--LTRAALMHRDGFRCAYCGGKAD-TVDHIVPRSRGGDHSWENCVAACSAC 165
Query: 217 NSRKGKKTLEEANMQLSRVPKAPK 240
N RK + L E L P PK
Sbjct: 166 NHRKADRLLTELGWTLRSAPVTPK 189
>gi|124005219|ref|ZP_01690061.1| HNH endonuclease family protein [Microscilla marina ATCC 23134]
gi|123989471|gb|EAY29032.1| HNH endonuclease family protein [Microscilla marina ATCC 23134]
Length = 173
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 97/173 (56%), Gaps = 17/173 (9%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVL-EYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
L+L+ Y + + ++A L +++KA+++ E DQ + + + ++ +P+++R+ + +
Sbjct: 9 LILNQDYTALTICTVQKAFILVYLKKAEMISENEDQPLRTVSSTYPMPSIIRLFRYVNLP 68
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R + LSR+N+ RD CQYC S +LT+DHV+P SRGG W+NL AC CNS+
Sbjct: 69 YRGVM---LSRQNIFKRDGNVCQYCGSPYDLTLDHVIPKSRGGRSTWDNLATACKGCNSK 125
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGT-PVEWRQYL 271
KG T EEA+M L R P P + I LR G EW+QYL
Sbjct: 126 KGDLTPEEASMPLKRPPFKP------------SFIMFLRDFSGAIDEEWKQYL 166
>gi|163792372|ref|ZP_02186349.1| HNH endonuclease family protein [alpha proteobacterium BAL199]
gi|159182077|gb|EDP66586.1| HNH endonuclease family protein [alpha proteobacterium BAL199]
Length = 200
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 83/143 (58%), Gaps = 7/143 (4%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ F+++ +++ YD ++SP+ +P+V+ ++ + +R
Sbjct: 19 LSYFPLSLWSWQDAVKAVFLDRVNIVSNYDILVHSPSFEMRLPSVIALKEYIHQSRR--- 75
Query: 165 KNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
+R N+ RD F+CQYC+ R ++LT DHVVP SRGG WEN+V AC CN RKG
Sbjct: 76 -PAFTRFNVFLRDRFSCQYCADRLPTQDLTFDHVVPRSRGGRTTWENVVTACGACNLRKG 134
Query: 222 KKTLEEANMQLSRVPKAPKDYDI 244
+ E M P+ P YD+
Sbjct: 135 SRMPREIGMIPRVTPRQPTAYDL 157
>gi|378827194|ref|YP_005189926.1| putative restriction endonuclease [Sinorhizobium fredii HH103]
gi|365180246|emb|CCE97101.1| putative restriction endonuclease [Sinorhizobium fredii HH103]
Length = 185
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 85/140 (60%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +L Y+ +++SP+ S +P+V+ ++ +Q +
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVTILAEYEHSVSSPSFSMRLPSVVCLKSYVQPSRFPA- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC S ++LT DHV+P + GG+ WEN+VAAC CN RKG K
Sbjct: 81 ---FTRFNVFLRDKFECQYCGSPDDLTFDHVIPRAHGGQTTWENVVAACSPCNLRKGSKL 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++A+M + P P D+
Sbjct: 138 PKQAHMFPHQRPYQPTVQDL 157
>gi|265984669|ref|ZP_06097404.1| HNH endonuclease [Brucella sp. 83/13]
gi|306838270|ref|ZP_07471119.1| HNH endonuclease [Brucella sp. NF 2653]
gi|264663261|gb|EEZ33522.1| HNH endonuclease [Brucella sp. 83/13]
gi|306406649|gb|EFM62879.1| HNH endonuclease [Brucella sp. NF 2653]
Length = 190
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 79/140 (56%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+E+ ++ YDQ ++SP+ S IP+V+ ++ VK R
Sbjct: 27 LSYYPLSLWSWQDAIKAVFLERVSIVAEYDQVVSSPSFSMRIPSVICLK---DYVKPPRY 83
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC S +LT DHV+P GGE WEN+VAAC CN RKG
Sbjct: 84 PA-FTRFNVFLRDRFECQYCGSPHDLTFDHVIPRCHGGETTWENVVAACSPCNLRKGGMM 142
Query: 225 LEEANMQLSRVPKAPKDYDI 244
A M + P P D+
Sbjct: 143 PAVAQMWPRQKPTMPTVQDL 162
>gi|306844640|ref|ZP_07477225.1| HNH endonuclease [Brucella inopinata BO1]
gi|306274812|gb|EFM56582.1| HNH endonuclease [Brucella inopinata BO1]
Length = 190
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 79/140 (56%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+E+ ++ YDQ ++SP+ S IP+V+ ++ VK R
Sbjct: 27 LSYYPLSLWSWQDAIKAVFLERVSIVAEYDQVVSSPSFSMRIPSVICLK---DYVKPPRY 83
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC S +LT DHV+P GGE WEN+VAAC CN RKG
Sbjct: 84 PA-FTRFNVFLRDRFECQYCGSPHDLTFDHVIPRCHGGETTWENVVAACSPCNLRKGGMM 142
Query: 225 LEEANMQLSRVPKAPKDYDI 244
A M + P P D+
Sbjct: 143 PAVAQMWPRQKPTMPTVQDL 162
>gi|443309843|ref|ZP_21039524.1| restriction endonuclease [Synechocystis sp. PCC 7509]
gi|442780106|gb|ELR90318.1| restriction endonuclease [Synechocystis sp. PCC 7509]
Length = 171
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 85/143 (59%), Gaps = 8/143 (5%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT--INSPNGSFYIPAVLRVRHLLQV 158
+V +Y P++ V +RAI L + KA+ L++ +T + SPN +P LR L +
Sbjct: 13 VVFSRNYLPISSVNIRRAIALIVLGKAEALDFGSETWFVRSPNLVIAVPQHLR----LTI 68
Query: 159 VKRRRIKN--NLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
RI ++R+ ++ RDN +CQYC S + LT+DHV+P S+GGE KW+N+V AC C
Sbjct: 69 ASTERIWKIPPVNRREVLKRDNQSCQYCGSNKRLTLDHVIPVSKGGEHKWDNVVTACESC 128
Query: 217 NSRKGKKTLEEANMQLSRVPKAP 239
N RK +T EA M L PKAP
Sbjct: 129 NQRKRDRTPLEAGMPLHTKPKAP 151
>gi|218294787|ref|ZP_03495641.1| HNH endonuclease [Thermus aquaticus Y51MC23]
gi|218244695|gb|EED11219.1| HNH endonuclease [Thermus aquaticus Y51MC23]
Length = 178
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 89/144 (61%), Gaps = 4/144 (2%)
Query: 88 SDEEFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIP 147
++E+ L R LVL+ +Y + + KR++ L A++L + +++P+ +P
Sbjct: 4 AEEKPLNLDAPRVLVLNAAYEVLGLASVKRSVLLVLSGGAEMLAESGRFLHTPSTQIPVP 63
Query: 148 AVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSREN-LTIDHVVPASRGGEWKW 206
+V+R++ L V+R + L+R+N++ RD +TCQYC + LT+DHV+P SRGG W
Sbjct: 64 SVIRLKRL---VRRGPARVPLNRRNVLRRDRYTCQYCGRQGGELTVDHVLPKSRGGRSTW 120
Query: 207 ENLVAACFKCNSRKGKKTLEEANM 230
ENLVAAC CN +KG +T EEA M
Sbjct: 121 ENLVAACRACNLKKGDRTPEEAGM 144
>gi|17986666|ref|NP_539300.1| 5-methylcytosine-specific restriction protein A [Brucella
melitensis bv. 1 str. 16M]
gi|23502503|ref|NP_698630.1| HNH endonuclease [Brucella suis 1330]
gi|161619580|ref|YP_001593467.1| HNH endonuclease [Brucella canis ATCC 23365]
gi|225628217|ref|ZP_03786251.1| 5-methylcytosine-specific restriction protein A [Brucella ceti str.
Cudo]
gi|225853110|ref|YP_002733343.1| HNH endonuclease [Brucella melitensis ATCC 23457]
gi|256263402|ref|ZP_05465934.1| HNH endonuclease [Brucella melitensis bv. 2 str. 63/9]
gi|256370056|ref|YP_003107567.1| HNH endonuclease family protein [Brucella microti CCM 4915]
gi|260565846|ref|ZP_05836329.1| HNH endonuclease [Brucella melitensis bv. 1 str. 16M]
gi|260568740|ref|ZP_05839208.1| HNH endonuclease [Brucella suis bv. 4 str. 40]
gi|261214617|ref|ZP_05928898.1| HNH endonuclease [Brucella abortus bv. 3 str. Tulya]
gi|261219240|ref|ZP_05933521.1| HNH endonuclease [Brucella ceti M13/05/1]
gi|261222776|ref|ZP_05937057.1| HNH endonuclease [Brucella ceti B1/94]
gi|261315982|ref|ZP_05955179.1| HNH endonuclease [Brucella pinnipedialis M163/99/10]
gi|261316155|ref|ZP_05955352.1| HNH endonuclease [Brucella pinnipedialis B2/94]
gi|261322301|ref|ZP_05961498.1| HNH endonuclease [Brucella ceti M644/93/1]
gi|261325694|ref|ZP_05964891.1| HNH endonuclease [Brucella neotomae 5K33]
gi|261750805|ref|ZP_05994514.1| HNH endonuclease [Brucella suis bv. 5 str. 513]
gi|261754060|ref|ZP_05997769.1| HNH endonuclease [Brucella suis bv. 3 str. 686]
gi|261757305|ref|ZP_06001014.1| HNH endonuclease [Brucella sp. F5/99]
gi|265987219|ref|ZP_06099776.1| HNH endonuclease [Brucella pinnipedialis M292/94/1]
gi|265991686|ref|ZP_06104243.1| HNH endonuclease [Brucella melitensis bv. 1 str. Rev.1]
gi|265995523|ref|ZP_06108080.1| HNH endonuclease [Brucella melitensis bv. 3 str. Ether]
gi|265998734|ref|ZP_06111291.1| HNH endonuclease [Brucella ceti M490/95/1]
gi|294850900|ref|ZP_06791576.1| 5-methylcytosine-specific restriction protein A [Brucella sp. NVSL
07-0026]
gi|306841364|ref|ZP_07474067.1| HNH endonuclease [Brucella sp. BO2]
gi|340791246|ref|YP_004756711.1| HNH endonuclease family protein [Brucella pinnipedialis B2/94]
gi|376275747|ref|YP_005116186.1| HNH endonuclease [Brucella canis HSK A52141]
gi|376281297|ref|YP_005155303.1| HNH endonuclease family protein [Brucella suis VBI22]
gi|384211999|ref|YP_005601082.1| HNH endonuclease [Brucella melitensis M5-90]
gi|384225289|ref|YP_005616453.1| HNH endonuclease family protein [Brucella suis 1330]
gi|384409110|ref|YP_005597731.1| HNH endonuclease [Brucella melitensis M28]
gi|17982284|gb|AAL51564.1| 5-methylcytosine-specific restriction enzyme a [Brucella melitensis
bv. 1 str. 16M]
gi|23348499|gb|AAN30545.1| HNH endonuclease family protein [Brucella suis 1330]
gi|161336391|gb|ABX62696.1| HNH endonuclease [Brucella canis ATCC 23365]
gi|225616063|gb|EEH13111.1| 5-methylcytosine-specific restriction protein A [Brucella ceti str.
Cudo]
gi|225641475|gb|ACO01389.1| HNH endonuclease [Brucella melitensis ATCC 23457]
gi|256000219|gb|ACU48618.1| HNH endonuclease family protein [Brucella microti CCM 4915]
gi|260151219|gb|EEW86314.1| HNH endonuclease [Brucella melitensis bv. 1 str. 16M]
gi|260154124|gb|EEW89206.1| HNH endonuclease [Brucella suis bv. 4 str. 40]
gi|260916224|gb|EEX83085.1| HNH endonuclease [Brucella abortus bv. 3 str. Tulya]
gi|260921360|gb|EEX88013.1| HNH endonuclease [Brucella ceti B1/94]
gi|260924329|gb|EEX90897.1| HNH endonuclease [Brucella ceti M13/05/1]
gi|261294991|gb|EEX98487.1| HNH endonuclease [Brucella ceti M644/93/1]
gi|261295378|gb|EEX98874.1| HNH endonuclease [Brucella pinnipedialis B2/94]
gi|261301674|gb|EEY05171.1| HNH endonuclease [Brucella neotomae 5K33]
gi|261305008|gb|EEY08505.1| HNH endonuclease [Brucella pinnipedialis M163/99/10]
gi|261737289|gb|EEY25285.1| HNH endonuclease [Brucella sp. F5/99]
gi|261740558|gb|EEY28484.1| HNH endonuclease [Brucella suis bv. 5 str. 513]
gi|261743813|gb|EEY31739.1| HNH endonuclease [Brucella suis bv. 3 str. 686]
gi|262553423|gb|EEZ09192.1| HNH endonuclease [Brucella ceti M490/95/1]
gi|262766807|gb|EEZ12425.1| HNH endonuclease [Brucella melitensis bv. 3 str. Ether]
gi|263002642|gb|EEZ15045.1| HNH endonuclease [Brucella melitensis bv. 1 str. Rev.1]
gi|263093398|gb|EEZ17467.1| HNH endonuclease [Brucella melitensis bv. 2 str. 63/9]
gi|264659416|gb|EEZ29677.1| HNH endonuclease [Brucella pinnipedialis M292/94/1]
gi|294821543|gb|EFG38539.1| 5-methylcytosine-specific restriction protein A [Brucella sp. NVSL
07-0026]
gi|306288549|gb|EFM59898.1| HNH endonuclease [Brucella sp. BO2]
gi|326409657|gb|ADZ66722.1| HNH endonuclease [Brucella melitensis M28]
gi|326539363|gb|ADZ87578.1| HNH endonuclease [Brucella melitensis M5-90]
gi|340559705|gb|AEK54943.1| HNH endonuclease family protein [Brucella pinnipedialis B2/94]
gi|343383469|gb|AEM18961.1| HNH endonuclease family protein [Brucella suis 1330]
gi|358258896|gb|AEU06631.1| HNH endonuclease family protein [Brucella suis VBI22]
gi|363404314|gb|AEW14609.1| HNH endonuclease [Brucella canis HSK A52141]
Length = 190
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 79/140 (56%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+E+ ++ YDQ ++SP+ S IP+V+ ++ VK R
Sbjct: 27 LSYYPLSLWSWQDAIKAVFLERVSIVAEYDQVVSSPSFSMRIPSVICLK---DYVKPPRY 83
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC S +LT DHV+P GGE WEN+VAAC CN RKG
Sbjct: 84 PA-FTRFNVFLRDRFECQYCGSPHDLTFDHVIPRCHGGETTWENVVAACSPCNLRKGGMM 142
Query: 225 LEEANMQLSRVPKAPKDYDI 244
A M + P P D+
Sbjct: 143 PAVAQMWPRQKPAMPTVQDL 162
>gi|254455478|ref|ZP_05068907.1| 5-methylcytosine-specific restriction enzyme A [Candidatus
Pelagibacter sp. HTCC7211]
gi|207082480|gb|EDZ59906.1| 5-methylcytosine-specific restriction enzyme A [Candidatus
Pelagibacter sp. HTCC7211]
Length = 189
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 86/140 (61%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ + F+++ ++ YD+ I SP+ + +P+V+ ++ + +
Sbjct: 26 LSYYPLSLWSWQDTVKSVFLDRVIIVSNYDRIIRSPSFNMQLPSVIALKDYII----PQT 81
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
K + +R N+ RD F+CQYC S E LT DH++P S+GGE W+N+V AC CN +KG K
Sbjct: 82 KPSFTRFNVFLRDKFSCQYCGSSEELTFDHLLPRSKGGETNWDNVVTACSSCNVKKGGKL 141
Query: 225 LEEANMQLSRVPKAPKDYDI 244
L+ + M+L++ P P D+
Sbjct: 142 LKFSGMKLNQSPYRPSTEDL 161
>gi|226186429|dbj|BAH34533.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length = 232
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 92/167 (55%), Gaps = 7/167 (4%)
Query: 84 EEYDSDEEFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQ--TINSPN 141
E + D E R L+L+++Y P+ + +RA+ L KAD + +Q ++S +
Sbjct: 51 EMFPPDRVVPEWVKRRVLLLNVTYEPLTALPARRAVVLMACGKADTVHEDEQGPVVHSAD 110
Query: 142 GSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRG 201
S +P+V+R+R ++V R RI ++R LM+RD+F C YC ++ TIDHVVP SRG
Sbjct: 111 WSVQVPSVIRLRTYVRVPYRARIP--MTRAALMHRDHFRCAYCGAKAE-TIDHVVPRSRG 167
Query: 202 GEWKWENLVAACFKCNSRKGKKTLEEANMQLSR--VPKAPKDYDILA 246
G WEN VA C CN RK K L E L VP + + +LA
Sbjct: 168 GGHSWENCVACCAPCNHRKADKMLSELGWTLRAELVPPSGPHWRLLA 214
>gi|425734412|ref|ZP_18852731.1| putative HNH endonuclease domain protein [Brevibacterium casei S18]
gi|425481679|gb|EKU48838.1| putative HNH endonuclease domain protein [Brevibacterium casei S18]
Length = 166
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 85/143 (59%), Gaps = 3/143 (2%)
Query: 98 FRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQ 157
+ LVL+ Y P++VV + RA+ L KA VL D + S + S P+V+ + ++
Sbjct: 1 MKTLVLNAGYEPLSVVPFTRAVVLVLTGKATVLAAEDAPVRSQHVSLDQPSVILLTRYVR 60
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
+ RR+ +LSR+ ++ RDN C YC+ R T+DHVVP SRGG WENLVA C CN
Sbjct: 61 PPRDRRV--SLSRRGVLRRDNHRCAYCT-RPASTVDHVVPRSRGGGNTWENLVACCRDCN 117
Query: 218 SRKGKKTLEEANMQLSRVPKAPK 240
+RKG +TL E +L P+ P+
Sbjct: 118 NRKGDRTLSEIGWKLGFRPQEPR 140
>gi|229493132|ref|ZP_04386924.1| HNH endonuclease family protein [Rhodococcus erythropolis SK121]
gi|453069718|ref|ZP_21972971.1| hypothetical protein G418_13729 [Rhodococcus qingshengii BKS 20-40]
gi|229319863|gb|EEN85692.1| HNH endonuclease family protein [Rhodococcus erythropolis SK121]
gi|452762263|gb|EME20559.1| hypothetical protein G418_13729 [Rhodococcus qingshengii BKS 20-40]
Length = 232
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 92/167 (55%), Gaps = 7/167 (4%)
Query: 84 EEYDSDEEFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQ--TINSPN 141
E + D E R L+L+++Y P+ + +RA+ L KAD + +Q ++S +
Sbjct: 51 EMFPPDRVVPEWVKRRVLLLNVTYEPLTALPARRAVVLMACGKADTVHEDEQGPVVHSAD 110
Query: 142 GSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRG 201
S +P+V+R+R ++V R RI ++R LM+RD+F C YC ++ TIDHVVP SRG
Sbjct: 111 WSVQVPSVIRLRTYVRVPYRARIP--MTRAALMHRDHFRCAYCGAKAE-TIDHVVPRSRG 167
Query: 202 GEWKWENLVAACFKCNSRKGKKTLEEANMQLSR--VPKAPKDYDILA 246
G WEN VA C CN RK K L E L VP + + +LA
Sbjct: 168 GGHSWENCVACCAPCNHRKADKMLSELGWTLRAELVPPSGPHWRLLA 214
>gi|163746502|ref|ZP_02153860.1| HNH endonuclease family protein, putative [Oceanibulbus indolifex
HEL-45]
gi|161380387|gb|EDQ04798.1| HNH endonuclease family protein, putative [Oceanibulbus indolifex
HEL-45]
Length = 194
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 82/135 (60%), Gaps = 4/135 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ +++++ +++ YD+ + SP+ IP+V+ ++ ++ KR
Sbjct: 31 LSYYPLSLWPWQEAVKAKWLDRVEIVAEYDEVVRSPSTVIRIPSVVVLKDYVKPQKR--- 87
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC ++ +LT DHVVP + GG W+N+VAAC CN RKG +
Sbjct: 88 -VAFTRFNLFLRDEFRCQYCGAKGDLTFDHVVPRAAGGVTSWQNVVAACSPCNLRKGSRP 146
Query: 225 LEEANMQLSRVPKAP 239
L + L + P+ P
Sbjct: 147 LHRTGLALRKPPRQP 161
>gi|393774333|ref|ZP_10362698.1| HNH endonuclease [Novosphingobium sp. Rr 2-17]
gi|392720189|gb|EIZ77689.1| HNH endonuclease [Novosphingobium sp. Rr 2-17]
Length = 202
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI +E+ D++ Y++ ++SPN + IP+V+ +R Q VK
Sbjct: 39 LSYYPLSLWPWQTAIKAVVLERVDIVSSYEREVHSPNWTMQIPSVIALR---QYVKPSEF 95
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F+CQYC S NLT DHV+P GG WEN++ AC CN +KG +T
Sbjct: 96 PA-FTRFNLFLRDRFSCQYCGSPHNLTFDHVIPRRLGGRTNWENILTACAPCNLKKGGRT 154
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++A M P P + +
Sbjct: 155 PKQAKMPPLVHPIRPTSWQL 174
>gi|170750731|ref|YP_001756991.1| HNH endonuclease [Methylobacterium radiotolerans JCM 2831]
gi|170657253|gb|ACB26308.1| HNH endonuclease [Methylobacterium radiotolerans JCM 2831]
Length = 182
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 83/143 (58%), Gaps = 7/143 (4%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ WK A F+++ ++ YD SP+ + +P+V+ +++ + + +
Sbjct: 16 LSYNPLSLWSWKDAFTALFLDRVTLVASYDVEARSPSRALRVPSVVALKNYVALAR---- 71
Query: 165 KNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
+R N+ RD F+CQYC R LT DHVVP SRGG WEN+VAAC CN RK
Sbjct: 72 SPAFTRYNIYLRDGFSCQYCGLRLPSGGLTFDHVVPRSRGGLSSWENVVAACSPCNLRKA 131
Query: 222 KKTLEEANMQLSRVPKAPKDYDI 244
+T +EA+M L P+ P Y++
Sbjct: 132 NRTPDEADMPLMTEPRRPTRYEL 154
>gi|17228351|ref|NP_484899.1| hypothetical protein alr0856 [Nostoc sp. PCC 7120]
gi|17130201|dbj|BAB72813.1| alr0856 [Nostoc sp. PCC 7120]
Length = 181
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 87/142 (61%), Gaps = 5/142 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT---INSPNGSFYIPAVLRVRHLLQ 157
+V +Y P+ V KRAI L KA+ L Y + ++SP+ +P +R++ +
Sbjct: 13 VVFSQNYLPLCRVNIKRAIVLLLTNKAEPLVGYTENGWRVHSPSLIIDVPKHIRLK--IT 70
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
V+R ++R+ ++ RD+ +CQYC SR++LT+DHV+P SRGG W+N+VAAC +CN
Sbjct: 71 SVERTWKVPPVNRREILRRDHHSCQYCGSRKHLTLDHVIPRSRGGSHTWDNVVAACERCN 130
Query: 218 SRKGKKTLEEANMQLSRVPKAP 239
SRKG +T E MQL PK P
Sbjct: 131 SRKGDRTPAEVGMQLRTKPKPP 152
>gi|227823212|ref|YP_002827184.1| endonuclease family protein [Sinorhizobium fredii NGR234]
gi|227342213|gb|ACP26431.1| putative endonuclease family protein [Sinorhizobium fredii NGR234]
Length = 185
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 85/140 (60%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +L Y+ +++SP+ S +P+V+ ++ +Q +
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVTILAEYEHSVSSPSFSMRLPSVVCLKSYVQPSRF--- 78
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC S ++LT DHV+P + GG+ WEN+VAAC CN RKG K
Sbjct: 79 -PAFTRFNVFLRDKFECQYCRSPDDLTFDHVIPRAHGGQTTWENVVAACSPCNLRKGSKL 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++A+M + P P D+
Sbjct: 138 PKQAHMFPHQRPYQPTVQDL 157
>gi|407773823|ref|ZP_11121123.1| HNH endonuclease [Thalassospira profundimaris WP0211]
gi|407283269|gb|EKF08810.1| HNH endonuclease [Thalassospira profundimaris WP0211]
Length = 188
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 83/143 (58%), Gaps = 7/143 (4%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ + F+E+ DVL YD+ + SP+ +P+V+ ++ + + +
Sbjct: 20 LSYFPLSLWSWQDTLKAVFLERVDVLSEYDREVRSPSFKMRLPSVISLKEYVPL----KS 75
Query: 165 KNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
+R N+ RD F+CQYC R LT DHV+P +RGG WEN+V AC CN KG
Sbjct: 76 SPAFTRFNVFLRDEFSCQYCGDRLPTNELTFDHVIPRARGGRTNWENIVTACSDCNLFKG 135
Query: 222 KKTLEEANMQLSRVPKAPKDYDI 244
+++ EA ++L R P P +++
Sbjct: 136 SRSVREAGLRLRRTPGQPSMHEL 158
>gi|150397722|ref|YP_001328189.1| HNH endonuclease [Sinorhizobium medicae WSM419]
gi|150029237|gb|ABR61354.1| HNH endonuclease [Sinorhizobium medicae WSM419]
Length = 216
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 84/140 (60%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +L Y+ +++SP+ S +P+V+ ++ +Q +
Sbjct: 53 LSYYPLSLWSWQDAIKAVFLDRVTILAEYEHSVSSPSFSMRLPSVVCLKSYVQPSRHPA- 111
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC S ++LT DHV+P + GG+ W+N+VAAC CN RKG K
Sbjct: 112 ---FTRFNVFLRDKFECQYCGSPDDLTFDHVIPRAHGGQTTWQNVVAACSPCNLRKGSKL 168
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++A M + P P D+
Sbjct: 169 PKQAGMFPHQKPYHPTVQDL 188
>gi|347526996|ref|YP_004833743.1| HNH endonuclease family protein [Sphingobium sp. SYK-6]
gi|345135677|dbj|BAK65286.1| HNH endonuclease family protein [Sphingobium sp. SYK-6]
Length = 188
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 79/140 (56%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ D++ YD+ ++SP+ IP+V+ ++ + R
Sbjct: 25 LSYYPLSLWPWQTAIKAVFLDRVDIVSSYDREVHSPSFQMRIPSVIALKQYV----RPSE 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F+C YC + +LT DHVVP GG WEN+ AC CN RKG +T
Sbjct: 81 YPAFTRFNLFLRDRFSCLYCGATSDLTFDHVVPRRAGGRTTWENVATACSPCNLRKGGRT 140
Query: 225 LEEANMQLSRVPKAPKDYDI 244
EANM L P P + +
Sbjct: 141 PREANMALREQPIRPTSWQL 160
>gi|386827307|ref|ZP_10114414.1| restriction endonuclease [Beggiatoa alba B18LD]
gi|386428191|gb|EIJ42019.1| restriction endonuclease [Beggiatoa alba B18LD]
Length = 165
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 86/142 (60%), Gaps = 5/142 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQ---TINSPNGSFYIPAVLRVRHLLQ 157
+V +Y P++ + KRAI L KA+ L++ ++SP +P ++R +
Sbjct: 7 VVFSKNYLPISQINIKRAITLLITGKAEPLDFNQGKGIAVHSPTMILIVP--YQIRLTVT 64
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
V+R L+R+ ++ RD TCQYC S +NLTIDHV+P S+GG+ W+N+V AC +CN
Sbjct: 65 PVERAWRAPTLNRREILRRDKHTCQYCGSTKNLTIDHVIPRSKGGKHVWDNVVTACERCN 124
Query: 218 SRKGKKTLEEANMQLSRVPKAP 239
+RKG +T +ANM L +P+ P
Sbjct: 125 NRKGDRTPLQANMILQTIPQQP 146
>gi|398354863|ref|YP_006400327.1| endonuclease family protein [Sinorhizobium fredii USDA 257]
gi|390130189|gb|AFL53570.1| putative endonuclease family protein [Sinorhizobium fredii USDA
257]
Length = 185
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 85/140 (60%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +L Y+ +++SP+ S +P+V+ ++ +Q +
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVIILAEYEHSVSSPSFSMRLPSVVCLKSYVQPSRF--- 78
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC S ++LT DHVVP + GG+ WEN+VAAC CN RKG K
Sbjct: 79 -PAFTRFNVFLRDRFECQYCGSPDDLTFDHVVPRAHGGQTTWENVVAACSPCNLRKGSKL 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++A+M + P P D+
Sbjct: 138 PKQAHMFPHQRPYQPTVQDL 157
>gi|390956260|ref|YP_006420017.1| restriction endonuclease [Terriglobus roseus DSM 18391]
gi|390411178|gb|AFL86682.1| restriction endonuclease [Terriglobus roseus DSM 18391]
Length = 205
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 99/178 (55%), Gaps = 22/178 (12%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ +RA+ L A E + T+++ +P+V+R+ ++
Sbjct: 39 LVLNASYEPINICGARRALVLVLKGVARTEEEHGNTLHAARVRMPMPSVIRL------LE 92
Query: 161 RRRIKNN---LSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACF 214
RRI + LSRKN++ RD TCQYC + +LT+DHV+P SRGG WENLVA C
Sbjct: 93 YRRIPHQTRALSRKNILLRDRNTCQYCGCILTTGDLTLDHVLPRSRGGLSTWENLVACCH 152
Query: 215 KCNSRKGKKTLEE-ANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
CN RKG + L E +M+L+R P+ ++ + +RML T WR+YL
Sbjct: 153 DCNRRKGNQLLHELQDMRLAREPRP------FSLHTSRHIMRMLGSGDAT---WRKYL 201
>gi|304321776|ref|YP_003855419.1| hypothetical protein PB2503_11149 [Parvularcula bermudensis
HTCC2503]
gi|303300678|gb|ADM10277.1| hypothetical protein PB2503_11149 [Parvularcula bermudensis
HTCC2503]
Length = 188
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 85/142 (59%), Gaps = 6/142 (4%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ + F+++ DV+ YD +NSP + +P+V+ ++ V R
Sbjct: 23 LSYFPLSLWSWQDTLKAVFLDRVDVIAEYDTAVNSPTVTMRLPSVVALK---TYVNHSR- 78
Query: 165 KNNLSRKNLMYRDNFTCQYCSS--RENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGK 222
K +R N+ RD FTCQYC + R+NLT DH++P SRGG+ W+N+V AC CN +KG
Sbjct: 79 KPAFTRFNVFLRDVFTCQYCGTQDRDNLTFDHLIPRSRGGKTTWQNIVTACSPCNLKKGN 138
Query: 223 KTLEEANMQLSRVPKAPKDYDI 244
K +A M+ + P P +++
Sbjct: 139 KLPRDARMEPFQPPYQPNMFEL 160
>gi|114327375|ref|YP_744532.1| HNH endonuclease family protein [Granulibacter bethesdensis
CGDNIH1]
gi|114315549|gb|ABI61609.1| HNH endonuclease family protein [Granulibacter bethesdensis
CGDNIH1]
Length = 197
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 85/157 (54%), Gaps = 12/157 (7%)
Query: 96 ACFRGLVLD-----ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVL 150
A F LVL+ +SY P+++ W+ A+ F+++ VL YD + SP+ + +P+V+
Sbjct: 17 AQFPALVLNADFRPLSYFPLSLWSWQDAVKAVFLDRVSVLSEYDHEVRSPSRTLRLPSVI 76
Query: 151 RVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWE 207
++ + +R +R N+ RD F+CQYC R LT DHV+P RGG WE
Sbjct: 77 ALKDYVPTARR----PAFTRFNVFLRDAFSCQYCGQRMPTPELTFDHVIPRCRGGRTTWE 132
Query: 208 NLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDI 244
N++ AC CN RKG + E NM P+ P +++
Sbjct: 133 NVITACGSCNLRKGSRLPRECNMLPLTTPRQPSTWEL 169
>gi|114800298|ref|YP_762067.1| HNH endonuclease domain-containing protein [Hyphomonas neptunium
ATCC 15444]
gi|114740472|gb|ABI78597.1| HNH endonuclease domain protein [Hyphomonas neptunium ATCC 15444]
Length = 197
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 79/143 (55%), Gaps = 4/143 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ I F+++ D++ YD + SP+ +P+V+ +R + R+
Sbjct: 34 LSYYPLSLWPWQEVIKAVFLDRVDIIAEYDYVVRSPSREMRLPSVIALRDFV----RQDR 89
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F C YC + +NLT DHV+P S+GG WEN+V AC CN KG K
Sbjct: 90 APAFTRFNVFLRDGFKCAYCGAHDNLTFDHVIPRSKGGRTTWENIVTACSPCNLAKGGKL 149
Query: 225 LEEANMQLSRVPKAPKDYDILAI 247
L + + L P P ++ + I
Sbjct: 150 LRASGLDLQHRPFRPNNFQLQDI 172
>gi|384445668|ref|YP_005604387.1| HNH endonuclease [Brucella melitensis NI]
gi|349743657|gb|AEQ09200.1| HNH endonuclease [Brucella melitensis NI]
Length = 176
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 79/140 (56%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+E+ ++ YDQ ++SP+ S IP+V+ ++ VK R
Sbjct: 13 LSYYPLSLWSWQDAIKAVFLERVSIVAEYDQVVSSPSFSMRIPSVICLK---DYVKPPRY 69
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC S +LT DHV+P GGE WEN+VAAC CN RKG
Sbjct: 70 PA-FTRFNVFLRDRFECQYCGSPHDLTFDHVIPRCHGGETTWENVVAACSPCNLRKGGMM 128
Query: 225 LEEANMQLSRVPKAPKDYDI 244
A M + P P D+
Sbjct: 129 PAVAQMWPRQKPAMPTVQDL 148
>gi|381165064|ref|ZP_09874294.1| restriction endonuclease [Saccharomonospora azurea NA-128]
gi|418459416|ref|ZP_13030535.1| restriction endonuclease [Saccharomonospora azurea SZMC 14600]
gi|359740498|gb|EHK89339.1| restriction endonuclease [Saccharomonospora azurea SZMC 14600]
gi|379256969|gb|EHY90895.1| restriction endonuclease [Saccharomonospora azurea NA-128]
Length = 180
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 82/143 (57%), Gaps = 5/143 (3%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLL 156
R L+L+ ++ P+ + +RAI L KA+V+ + ++S + +P+V+R+ +
Sbjct: 14 RVLLLNATFEPLTALPLRRAIVLLVCGKAEVVHEDPAGALLHSATATLEVPSVIRLSRYV 73
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R R+ L+R LM+RD F C YC R TIDHVVP SRGG WEN VA C KC
Sbjct: 74 RVPYRARVP--LTRAGLMHRDRFRCAYCGGRAE-TIDHVVPRSRGGAHSWENCVACCAKC 130
Query: 217 NSRKGKKTLEEANMQLSRVPKAP 239
N RK K L E +L VP+ P
Sbjct: 131 NHRKADKMLSELGWRLRTVPREP 153
>gi|424858704|ref|ZP_18282736.1| endonuclease [Rhodococcus opacus PD630]
gi|356662391|gb|EHI42690.1| endonuclease [Rhodococcus opacus PD630]
Length = 223
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 88/152 (57%), Gaps = 7/152 (4%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT--INSPNGSFYIPAVLRVRHLL 156
R L+L+++Y P+ + +RA+ L KAD + Q ++S S +P+V+R+R+ +
Sbjct: 57 RVLLLNVTYEPLTALPARRAVVLMTCGKADTVHEDPQAPVVHSEQWSVQVPSVIRLRNYV 116
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R R+ ++R LM+RD F C YC ++ T+DHVVP SRGGE WEN VA C C
Sbjct: 117 RVPYRARVP--MTRAALMHRDRFRCAYCGAKAE-TVDHVVPRSRGGEHSWENCVACCAPC 173
Query: 217 NSRKGKKTLEEANMQL--SRVPKAPKDYDILA 246
N RK K L E L S VP + + +LA
Sbjct: 174 NHRKADKLLTELGWTLRASLVPPSGPHWRLLA 205
>gi|347756387|ref|YP_004863950.1| Restriction endonuclease [Candidatus Chloracidobacterium
thermophilum B]
gi|347588904|gb|AEP13433.1| Restriction endonuclease [Candidatus Chloracidobacterium
thermophilum B]
Length = 206
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 98/176 (55%), Gaps = 16/176 (9%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEY-YDQTINSPNGSFYIPAVLRVRHLLQVV 159
L+L+ SY P+ +V RA+ + + A+VLE D+ + + +F P+V+R+ + V
Sbjct: 34 LLLNASYEPLGLVSVPRALRMVWQRTAEVLEKDGDRVLRTVRFTFACPSVVRLHEYVNVR 93
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKC 216
KRRR L R ++ RD + CQYC+ R +LT+DH+VP SRGG+ ENL A C C
Sbjct: 94 KRRRSAGGL-RAKILIRDRYRCQYCNKRGTAADLTLDHIVPRSRGGQSVPENLCACCHDC 152
Query: 217 NSRKGKKTLEEANMQLSRVPKAP-KDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
N RKG +T +EA M L P A D D+ A+ +A + EWR+YL
Sbjct: 153 NQRKGDRTPDEARMPLLSNPAALWHDLDLTALHHAAA----------SRPEWRKYL 198
>gi|162148898|ref|YP_001603359.1| endonuclease [Gluconacetobacter diazotrophicus PAl 5]
gi|209545355|ref|YP_002277584.1| HNH endonuclease [Gluconacetobacter diazotrophicus PAl 5]
gi|161787475|emb|CAP57071.1| putative endonuclease protein [Gluconacetobacter diazotrophicus PAl
5]
gi|209533032|gb|ACI52969.1| HNH endonuclease [Gluconacetobacter diazotrophicus PAl 5]
Length = 186
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 85/155 (54%), Gaps = 12/155 (7%)
Query: 98 FRGLVLD-----ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRV 152
+ LVL+ +SY P+++ W+ AI F+++ VL YD+ + SP+ S +P+V+ +
Sbjct: 8 YPALVLNADFRPLSYFPLSLWSWQDAIKAVFLDRVSVLSEYDEEVRSPSRSLRLPSVIAL 67
Query: 153 RHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENL 209
+ + +R +R N+ RDNF+CQYC R +LT DHV+P +GG WEN+
Sbjct: 68 KDYIPTARR----PAFTRFNVFLRDNFSCQYCLDRLPTHDLTFDHVIPRCKGGRTTWENV 123
Query: 210 VAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDI 244
V AC CN KG + E M R P P +++
Sbjct: 124 VTACSPCNLMKGSRMPHELKMYPRRTPSQPSTWEL 158
>gi|110635353|ref|YP_675561.1| HNH endonuclease [Chelativorans sp. BNC1]
gi|110286337|gb|ABG64396.1| HNH endonuclease [Chelativorans sp. BNC1]
Length = 185
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 83/140 (59%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ F+++ +++ Y+Q I+SP+ + +P+V+ ++ VK R
Sbjct: 22 LSYYPLSLWSWQDAVKAVFLDRVNIVAEYEQAISSPSFTMRLPSVVSLK---TYVKPSRY 78
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC +RE LT DHVVP GG WEN+VAAC CN RKG
Sbjct: 79 PA-FTRFNVFLRDRFQCQYCGTREELTFDHVVPRRHGGVTSWENVVAACSPCNLRKGGLM 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++A M + P P +D+
Sbjct: 138 PDQAKMWPQQKPYRPTVHDL 157
>gi|399037232|ref|ZP_10734111.1| restriction endonuclease [Rhizobium sp. CF122]
gi|398065224|gb|EJL56875.1| restriction endonuclease [Rhizobium sp. CF122]
Length = 185
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 85/140 (60%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ Y+ +++SP+ S +P+V+ ++ +Q +
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIIAEYEHSVSSPSFSMRLPSVVCLKTYVQPSRNPA- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC ++LT DHV+P + GGE W+N+VAAC CN RKG K
Sbjct: 81 ---FTRFNVFLRDKFECQYCGEHDDLTFDHVIPRAHGGETTWQNVVAACSPCNLRKGSKL 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++A M ++ P P D+
Sbjct: 138 PKQAGMFPNQKPYQPTVQDL 157
>gi|134097921|ref|YP_001103582.1| HNH endonuclease [Saccharopolyspora erythraea NRRL 2338]
gi|291009510|ref|ZP_06567483.1| HNH endonuclease [Saccharopolyspora erythraea NRRL 2338]
gi|133910544|emb|CAM00657.1| HNH endonuclease [Saccharopolyspora erythraea NRRL 2338]
Length = 164
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 82/141 (58%), Gaps = 5/141 (3%)
Query: 102 VLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
+L+ ++ P+ + +RAI L KA+V+ + ++S S +P+V+R+ + ++V
Sbjct: 1 MLNTTFEPLTALPLRRAIVLIVCGKAEVVHGDSAGMVLHSATSSVEVPSVIRLSNFVRVP 60
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R R+ L+R LM RDN C YC R TIDHVVP SRGG WEN VA+C KCN R
Sbjct: 61 YRGRVP--LTRAALMLRDNHRCVYCGGRAE-TIDHVVPRSRGGPHAWENCVASCTKCNHR 117
Query: 220 KGKKTLEEANMQLSRVPKAPK 240
K KTL E +L P AP+
Sbjct: 118 KADKTLSELGWRLPVAPHAPR 138
>gi|110680359|ref|YP_683366.1| HNH endonuclease family protein [Roseobacter denitrificans OCh 114]
gi|109456475|gb|ABG32680.1| HNH endonuclease family protein, putative [Roseobacter
denitrificans OCh 114]
Length = 194
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 80/135 (59%), Gaps = 4/135 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ ++++ D++ Y+ + SP+ IP+V+ ++ ++ KR
Sbjct: 31 LSYYPLSLWPWQDAVKAAWLDRVDIVAEYEDIVRSPSTEIRIPSVVVLKDYVKPQKR--- 87
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC +R +LT DHVVP + GG W+N+VAAC CN +KG K
Sbjct: 88 -VAFTRFNLFLRDEFRCQYCGARGDLTFDHVVPRASGGVTSWQNVVAACSPCNLKKGAKP 146
Query: 225 LEEANMQLSRVPKAP 239
L + L + P+ P
Sbjct: 147 LHRTGLSLRKPPRQP 161
>gi|384260910|ref|YP_005416096.1| HNH endonuclease [Rhodospirillum photometricum DSM 122]
gi|378402010|emb|CCG07126.1| HNH endonuclease [Rhodospirillum photometricum DSM 122]
Length = 218
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 78/133 (58%), Gaps = 7/133 (5%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ FM++ +V+ YD I SP +P+V+ ++ + R
Sbjct: 52 LSYLPLSLWSWQEAVKAVFMDRVNVVSEYDFIIRSPTLEMRLPSVISLKEYVPTAPR--- 108
Query: 165 KNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
+R N+ RD FTCQYC +R +LT DHVVP S+GG W+N+VAAC CN RK
Sbjct: 109 -AAFTRFNVFLRDGFTCQYCGTRLPAHDLTFDHVVPRSKGGRTTWDNVVAACGPCNMRKA 167
Query: 222 KKTLEEANMQLSR 234
+T EA+M L +
Sbjct: 168 NRTPREASMPLRK 180
>gi|431797446|ref|YP_007224350.1| restriction endonuclease [Echinicola vietnamensis DSM 17526]
gi|430788211|gb|AGA78340.1| restriction endonuclease [Echinicola vietnamensis DSM 17526]
Length = 171
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 84/140 (60%), Gaps = 4/140 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVL-EYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL++ + P+ VV ++A+ L +EK VL +Y +I + + F PAV+R+ V
Sbjct: 6 LVLNLDHTPIAVVNVQKAMVLTLLEKVSVLADYPFLSIRTIDREFSYPAVVRLDEYKNVP 65
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R + L+R NL RD+ CQYC S ++LT+DHV+P S+GG+ W NL+ AC +CN
Sbjct: 66 YRGVL---LTRSNLFKRDDNECQYCGSPKHLTVDHVIPRSKGGKSSWTNLITACHRCNVL 122
Query: 220 KGKKTLEEANMQLSRVPKAP 239
KG KT EE M + + P P
Sbjct: 123 KGDKTPEEVGMLMRKKPFKP 142
>gi|312198933|ref|YP_004018994.1| HNH endonuclease [Frankia sp. EuI1c]
gi|311230269|gb|ADP83124.1| HNH endonuclease [Frankia sp. EuI1c]
Length = 171
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 97/172 (56%), Gaps = 14/172 (8%)
Query: 100 GLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ +Y P+ VV +RA+ L +KA ++E Q ++S + +P V+R+ ++V
Sbjct: 4 ALVLNATYEPLCVVSQRRALILVLTDKAVMVEAGGQVLHSAASAVEVPVVVRLARFVRVP 63
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R ++ L+RK ++ RD+ C YC + ++DHV+P SRGG WEN+VAAC +CN
Sbjct: 64 YRSQVP--LTRKGVLARDHHRCVYCGAPAT-SLDHVIPRSRGGPHVWENVVAACGRCNHI 120
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
K + + + +L + P+AP + AA R+L R+ P W QYL
Sbjct: 121 KADRAVADLGWRLRQAPRAP----------SGAAWRILGSRRMDP-RWSQYL 161
>gi|111018395|ref|YP_701367.1| endonuclease [Rhodococcus jostii RHA1]
gi|110817925|gb|ABG93209.1| possible endonuclease [Rhodococcus jostii RHA1]
Length = 250
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 88/152 (57%), Gaps = 7/152 (4%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT--INSPNGSFYIPAVLRVRHLL 156
R L+L+++Y P+ + +RA+ L KAD + Q ++S S +P+V+R+R+ +
Sbjct: 84 RVLLLNVTYEPLTALPARRAVVLMTCGKADTVHEDPQAPVVHSEQWSVQVPSVIRLRNYV 143
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R R+ ++R LM+RD F C YC ++ T+DHVVP SRGGE WEN VA C C
Sbjct: 144 RVPYRARVP--MTRAALMHRDRFRCAYCGAKAE-TVDHVVPRSRGGEHSWENCVACCAPC 200
Query: 217 NSRKGKKTLEEANMQL--SRVPKAPKDYDILA 246
N RK K L E L S VP + + +LA
Sbjct: 201 NHRKADKLLSELGWTLRASLVPPSGPHWRLLA 232
>gi|407642901|ref|YP_006806660.1| endonuclease [Nocardia brasiliensis ATCC 700358]
gi|407305785|gb|AFT99685.1| endonuclease [Nocardia brasiliensis ATCC 700358]
Length = 170
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 83/144 (57%), Gaps = 5/144 (3%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQ--TINSPNGSFYIPAVLRVRHLL 156
R L+L+ +Y P+ + +RAI L +KAD + + + ++S + IP+V+R+R +
Sbjct: 4 RVLLLNATYEPLTALSARRAIVLLICDKADTVHHDAEGPVVHSAESAVTIPSVIRLRSYV 63
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
V R R+ ++R LM+RD + C YC S+ TIDHV+P SRGGE WEN VA+C C
Sbjct: 64 HVPYRARVP--MTRAALMHRDRYRCGYCGSKAE-TIDHVIPRSRGGEHSWENCVASCAPC 120
Query: 217 NSRKGKKTLEEANMQLSRVPKAPK 240
N RK K L E L +PK
Sbjct: 121 NHRKADKLLSELGWTLRSPLVSPK 144
>gi|354564674|ref|ZP_08983850.1| HNH endonuclease [Fischerella sp. JSC-11]
gi|353549800|gb|EHC19239.1| HNH endonuclease [Fischerella sp. JSC-11]
Length = 172
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 90/144 (62%), Gaps = 9/144 (6%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT---INSPNGSFYIPAVLRVRHLLQ 157
+V +Y P+ V KRAI L KA+ L+ + ++SP+ +P +R L+
Sbjct: 13 VVFSQNYLPLCRVNIKRAIVLLLTNKAEPLDITTNSGWQVHSPSLVIDVPKQIR----LK 68
Query: 158 VVKRRRIKN--NLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFK 215
+ R R+ ++R+ ++ RD+ +CQYC S ++LT+DHV+P SRGG+ W+N+VAAC +
Sbjct: 69 IASRERMWKVPPVNRREVLRRDHHSCQYCGSSKHLTLDHVLPRSRGGQHTWDNVVAACER 128
Query: 216 CNSRKGKKTLEEANMQLSRVPKAP 239
CNS+KG KT +EA M+L PKAP
Sbjct: 129 CNSKKGDKTPQEAGMRLRTKPKAP 152
>gi|254502921|ref|ZP_05115072.1| HNH endonuclease domain protein [Labrenzia alexandrii DFL-11]
gi|222438992|gb|EEE45671.1| HNH endonuclease domain protein [Labrenzia alexandrii DFL-11]
Length = 172
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ I F+++ +++ YD + SP+ F +P+V+ ++ ++ +
Sbjct: 9 LSYYPLSLWSWQDTIKAVFLDRVNIVAEYDAAVRSPSFEFKLPSVVSLKTFVKPSRHPA- 67
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC S+E LT DH++P S+GG WEN++ AC CN RK K+
Sbjct: 68 ---FTRFNVFLRDKFQCQYCGSKEELTFDHLIPRSKGGLTTWENVITACSPCNLRKSNKS 124
Query: 225 LEEANMQLSRVPKAPKDYDI 244
E+ NM +P P D+
Sbjct: 125 CEQLNMWPMHMPFRPTIQDL 144
>gi|354613366|ref|ZP_09031289.1| HNH endonuclease [Saccharomonospora paurometabolica YIM 90007]
gi|353222306|gb|EHB86621.1| HNH endonuclease [Saccharomonospora paurometabolica YIM 90007]
Length = 166
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 86/142 (60%), Gaps = 5/142 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLLQV 158
L+L+ ++ P+ + +RAI L KA+V+ + T++SP + +P+V+R+ ++V
Sbjct: 2 LLLNATFEPLTALPLRRAIVLVVCGKAEVVHEDPTGLTLHSPTRTVEVPSVIRLSSYVRV 61
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
R ++ L+R LM+RD F C YC +R T+DHVVP SRGG W+N VA C +CN
Sbjct: 62 PYRAQVP--LTRAGLMHRDRFRCAYCGARAE-TVDHVVPRSRGGAHSWQNCVACCTRCNH 118
Query: 219 RKGKKTLEEANMQLSRVPKAPK 240
RK ++L E +L VP AP+
Sbjct: 119 RKADRSLAELGWRLRVVPHAPR 140
>gi|384101111|ref|ZP_10002164.1| endonuclease [Rhodococcus imtechensis RKJ300]
gi|419968164|ref|ZP_14484024.1| endonuclease [Rhodococcus opacus M213]
gi|432341671|ref|ZP_19591006.1| endonuclease [Rhodococcus wratislaviensis IFP 2016]
gi|383841417|gb|EID80698.1| endonuclease [Rhodococcus imtechensis RKJ300]
gi|414566432|gb|EKT77265.1| endonuclease [Rhodococcus opacus M213]
gi|430773344|gb|ELB89037.1| endonuclease [Rhodococcus wratislaviensis IFP 2016]
Length = 193
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 88/152 (57%), Gaps = 7/152 (4%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT--INSPNGSFYIPAVLRVRHLL 156
R L+L+++Y P+ + +RA+ L KAD + Q ++S S +P+V+R+R+ +
Sbjct: 27 RVLLLNVTYEPLTALPARRAVVLMTCGKADTVHEDPQAPVVHSEQWSVQVPSVIRLRNYV 86
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R R+ ++R LM+RD F C YC ++ T+DHVVP SRGGE WEN VA C C
Sbjct: 87 RVPYRARVP--MTRAALMHRDRFRCAYCGAKAE-TVDHVVPRSRGGEHSWENCVACCAPC 143
Query: 217 NSRKGKKTLEEANMQL--SRVPKAPKDYDILA 246
N RK K L E L S VP + + +LA
Sbjct: 144 NHRKADKLLSELGWTLRASLVPPSGPHWRLLA 175
>gi|453073887|ref|ZP_21976686.1| hypothetical protein G419_01400 [Rhodococcus triatomae BKS 15-14]
gi|452765913|gb|EME24167.1| hypothetical protein G419_01400 [Rhodococcus triatomae BKS 15-14]
Length = 219
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 88/152 (57%), Gaps = 7/152 (4%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLL 156
R L+L+ +Y P+ + +RA+ L +KAD + + Q I+S S +P+V+R+R+ +
Sbjct: 53 RVLLLNATYEPLTALPVRRAVVLLVCDKADSVHEDPLGQVIHSAGCSIQVPSVIRLRNYV 112
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R RI ++R LM+RD F C YC + TIDHV+P SRGGE WEN VA C C
Sbjct: 113 RVPYRARIP--MTRAALMHRDRFRCAYCGDKAE-TIDHVIPRSRGGEHSWENCVACCAPC 169
Query: 217 NSRKGKKTLEEANMQL--SRVPKAPKDYDILA 246
N RK K L E L + VP + + +LA
Sbjct: 170 NHRKADKLLSELGWTLRAALVPPKGQHWRLLA 201
>gi|71083124|ref|YP_265843.1| 5-methylcytosine-specific restriction enzyme A [Candidatus
Pelagibacter ubique HTCC1062]
gi|91762450|ref|ZP_01264415.1| 5-methylcytosine-specific restriction enzyme A [Candidatus
Pelagibacter ubique HTCC1002]
gi|71062237|gb|AAZ21240.1| 5-methylcytosine-specific restriction enzyme A [Candidatus
Pelagibacter ubique HTCC1062]
gi|91718252|gb|EAS84902.1| 5-methylcytosine-specific restriction enzyme A [Candidatus
Pelagibacter ubique HTCC1002]
Length = 188
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ +I F+++ ++ YD+ I SP+ + +P+V+ ++ + + +
Sbjct: 25 LSYYPLSLWSWQDSIKSVFLDRVVIVSNYDRVIRSPSFNMRLPSVIALKSFI----KPQS 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+ +R N+ RD F+CQYC S E+LT DH++P S+GG+ W+N+V AC CN +KG +
Sbjct: 81 NPSFTRFNVFLRDKFSCQYCGSGEDLTFDHLLPRSKGGQTNWDNVVTACSSCNVKKGGRL 140
Query: 225 LEEANMQLSRVPKAPKDYDI 244
L+ +M L++ P P D+
Sbjct: 141 LKNLDMSLNQKPYQPSTEDL 160
>gi|58040381|ref|YP_192345.1| 5-methylcytosine-specific restriction protein [Gluconobacter
oxydans 621H]
gi|58002795|gb|AAW61689.1| 5-Methylcytosine-specific restriction enzyme [Gluconobacter oxydans
621H]
Length = 188
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 83/151 (54%), Gaps = 13/151 (8%)
Query: 98 FRGLVLD-----ISYRPVNVVCWKRAICLEFMEKADVL-EYYDQTINSPNGSFYIPAVLR 151
F LVL+ +SY P+++ W+ A+ F+++ VL EY D ++SP+ S +P+V+
Sbjct: 9 FPALVLNADFRPLSYFPLSLWSWQEAVKAVFLDRVSVLSEYEDAVVHSPSQSMRLPSVIA 68
Query: 152 VRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWEN 208
++ + + K +R N+ RDNF+CQYC R LT DHV+P +RGG WEN
Sbjct: 69 LKDYIPTAR----KPAFTRFNVFLRDNFSCQYCHDRLPTHELTFDHVIPRARGGRTTWEN 124
Query: 209 LVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
+V AC CN KG K E M R P P
Sbjct: 125 VVTACSPCNLLKGSKLPSELGMHPHRKPVQP 155
>gi|434394103|ref|YP_007129050.1| HNH endonuclease [Gloeocapsa sp. PCC 7428]
gi|428265944|gb|AFZ31890.1| HNH endonuclease [Gloeocapsa sp. PCC 7428]
Length = 184
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 86/143 (60%), Gaps = 8/143 (5%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT--INSPNGSFYIPAVLRVRHLLQV 158
+V +Y P++ + +RAI L KA+ L+ ++ + SP+ +PA +R L V
Sbjct: 12 VVFSKNYLPISKINVRRAIQLLIAGKAEALDLTQESWLVRSPSIVLVVPAYIR----LTV 67
Query: 159 VKRRRI--KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
RI ++R+ ++ RDN+TCQYC S ++LT+DHV+P SRGG W+N+V AC +C
Sbjct: 68 ASVERIWKVPPVNRREVLRRDNYTCQYCGSHKHLTLDHVIPVSRGGLHTWDNVVTACERC 127
Query: 217 NSRKGKKTLEEANMQLSRVPKAP 239
N RK +T EA+M L PKAP
Sbjct: 128 NQRKSDRTPIEASMPLHTKPKAP 150
>gi|312131249|ref|YP_003998589.1| hnh endonuclease [Leadbetterella byssophila DSM 17132]
gi|311907795|gb|ADQ18236.1| HNH endonuclease [Leadbetterella byssophila DSM 17132]
Length = 167
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 85/140 (60%), Gaps = 4/140 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYD-QTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ Y ++V +A L ++ KA+++ D + + + S+ +P ++R+ +QV
Sbjct: 6 LVLNADYSALSVCTVPKAFLLVYLNKAEMVAESDSEHLRTVTSSYALPTIIRLHAYVQVP 65
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+R I L+R N+ RD+ CQYC S +LT+DHV+P SRGG+ W+NLVAAC CNS+
Sbjct: 66 YKRII---LNRHNIFKRDHHQCQYCGSNRDLTLDHVLPKSRGGKTTWDNLVAACKHCNSK 122
Query: 220 KGKKTLEEANMQLSRVPKAP 239
KG EE M+L + P P
Sbjct: 123 KGDSLPEEIGMKLRQKPFRP 142
>gi|262277932|ref|ZP_06055725.1| HNH endonuclease [alpha proteobacterium HIMB114]
gi|262225035|gb|EEY75494.1| HNH endonuclease [alpha proteobacterium HIMB114]
Length = 189
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 88/159 (55%), Gaps = 9/159 (5%)
Query: 88 SDEEFDELACFRGLVLD-----ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNG 142
S E+ L LVL+ +SY P+++ W+ A+ F+++ +++ YD+ I SP+
Sbjct: 4 SSSEYLPLEKCPALVLNADYRPLSYYPLSLWSWQDAVRDVFLDRVNIVSTYDREIRSPSF 63
Query: 143 SFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGG 202
S +P+V+ ++H ++ + N +R N+ RD FTC YC ++NLT DHVVP S GG
Sbjct: 64 SMKLPSVISLKHFVKPSEFP----NFTRFNVFLRDKFTCLYCGDKKNLTFDHVVPKSLGG 119
Query: 203 EWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKD 241
WEN+ AC CN RKG K + M S P P +
Sbjct: 120 LTTWENVATACSPCNVRKGGKMPKACGMIPSVQPYKPTE 158
>gi|433648935|ref|YP_007293937.1| restriction endonuclease [Mycobacterium smegmatis JS623]
gi|433298712|gb|AGB24532.1| restriction endonuclease [Mycobacterium smegmatis JS623]
Length = 218
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 82/144 (56%), Gaps = 5/144 (3%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLL 156
R L+L+ +Y P+ + +RA+ + KA V+ + I+S S +P+V+R+ +
Sbjct: 52 RVLLLNSTYEPLTALPMRRAVIMLMCGKASVVHDDPNGPVIHSATRSIVVPSVIRLHSYV 111
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R RI ++R LM+RD F C YC + + T+DHVVP SRGGE WEN VAAC C
Sbjct: 112 RVPYRARIP--MTRAALMHRDRFRCAYCGGKAD-TVDHVVPRSRGGEHTWENCVAACSTC 168
Query: 217 NSRKGKKTLEEANMQLSRVPKAPK 240
N RK + L E L VP PK
Sbjct: 169 NHRKADRLLAELGWTLRAVPVPPK 192
>gi|217977197|ref|YP_002361344.1| HNH endonuclease [Methylocella silvestris BL2]
gi|217502573|gb|ACK49982.1| HNH endonuclease [Methylocella silvestris BL2]
Length = 189
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 82/140 (58%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ YD+ + SP+ +P+V+ ++ ++ +
Sbjct: 26 LSYYPLSLWSWQDAIKAVFLDRVNIVSNYDKAVRSPSFEMLLPSVVSLKTYIKPSRHPA- 84
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F+CQYC SR++LT DHV P S+GG WEN+VAAC CN RK +
Sbjct: 85 ---FTRFNVFLRDRFSCQYCGSRQDLTFDHVTPRSKGGMTTWENVVAACSSCNLRKSDRL 141
Query: 225 LEEANMQLSRVPKAPKDYDI 244
EA M + P P D+
Sbjct: 142 PGEARMWPAHKPYQPTVNDL 161
>gi|384565190|ref|ZP_10012294.1| restriction endonuclease [Saccharomonospora glauca K62]
gi|384521044|gb|EIE98239.1| restriction endonuclease [Saccharomonospora glauca K62]
Length = 242
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 81/144 (56%), Gaps = 5/144 (3%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLL 156
R L+L+ ++ P+ + +RAI L KA+V+ + T+ S + +P+V+R+ +
Sbjct: 76 RVLLLNATFEPLTALPLRRAIVLLVCGKAEVVHEDPAGSTLRSATMTVEVPSVIRLSRYV 135
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
V R ++ L+R LM+RD F C YC R TIDHVVP SRGG WEN VA C KC
Sbjct: 136 HVPYRAQVP--LTRAGLMHRDRFRCAYCGGRAE-TIDHVVPRSRGGAHSWENCVACCAKC 192
Query: 217 NSRKGKKTLEEANMQLSRVPKAPK 240
N RK K L E +L VP P+
Sbjct: 193 NHRKADKLLSELGWRLRTVPTQPR 216
>gi|146278166|ref|YP_001168325.1| HNH endonuclease [Rhodobacter sphaeroides ATCC 17025]
gi|145556407|gb|ABP71020.1| HNH endonuclease [Rhodobacter sphaeroides ATCC 17025]
Length = 139
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 69/112 (61%), Gaps = 4/112 (3%)
Query: 133 YDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTI 192
YDQ + S +F IP+V+ ++ + KR +R NL RD F CQYC ++ +LT
Sbjct: 4 YDQVVRSQRAAFRIPSVVVLKEFVSPQKR----VAFTRFNLFLRDEFRCQYCGAKGDLTF 59
Query: 193 DHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDI 244
DHV+P +RGG W+N+VAAC CN RKG KTL +A M+L R PK P ++
Sbjct: 60 DHVLPRARGGVTSWQNVVAACSSCNLRKGSKTLRQAGMRLFRAPKEPTPAEM 111
>gi|359419585|ref|ZP_09211536.1| hypothetical protein GOARA_043_00800 [Gordonia araii NBRC 100433]
gi|358244546|dbj|GAB09605.1| hypothetical protein GOARA_043_00800 [Gordonia araii NBRC 100433]
Length = 163
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 84/142 (59%), Gaps = 5/142 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKAD-VLEYYDQTI-NSPNGSFYIPAVLRVRHLLQV 158
L+L+ +Y P+ VV +RAI L +A+ V E D I +S + +P+V+R+RH ++V
Sbjct: 2 LLLNATYEPLTVVSTRRAIVLTITGRAETVHEDEDHAIAHSEQLAVPVPSVIRLRHFVRV 61
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
R +I ++R LM RD C YC SR TIDHVVP SRGG+ W+N VA C CN
Sbjct: 62 PYRAQIP--MTRAALMRRDASRCVYCGSRAT-TIDHVVPRSRGGQNTWDNCVACCAPCNR 118
Query: 219 RKGKKTLEEANMQLSRVPKAPK 240
RK + L E L+R P APK
Sbjct: 119 RKADRMLHELGWSLNRQPVAPK 140
>gi|83595062|ref|YP_428814.1| HNH endonuclease [Rhodospirillum rubrum ATCC 11170]
gi|83577976|gb|ABC24527.1| HNH endonuclease [Rhodospirillum rubrum ATCC 11170]
Length = 187
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 81/143 (56%), Gaps = 7/143 (4%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ FM++ V+ YD+ ++SP+ +P+V+ ++ + V KR
Sbjct: 20 LSYFPLSLWSWQEAVKAVFMDRVCVVSEYDRVVHSPSLDLSLPSVISLKEYVPVAKR--- 76
Query: 165 KNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
+R N+ RD F CQYC R +LT DHVVP S+GG W N+V AC CN RK
Sbjct: 77 -AAFTRFNVFLRDGFACQYCGIRLPAHDLTFDHVVPRSKGGVTAWNNVVTACGPCNMRKA 135
Query: 222 KKTLEEANMQLSRVPKAPKDYDI 244
+T EA M L + P P + +
Sbjct: 136 NRTPREAAMPLLQRPAEPSTHRL 158
>gi|188584561|ref|YP_001928006.1| HNH endonuclease [Methylobacterium populi BJ001]
gi|179348059|gb|ACB83471.1| HNH endonuclease [Methylobacterium populi BJ001]
Length = 182
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 81/143 (56%), Gaps = 7/143 (4%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ WK A F+++ ++ YD +SP+ S +P+V+ ++ + + +
Sbjct: 16 LSYNPLSLWSWKDAFTALFLDRVTLVANYDIEAHSPSRSLKVPSVVALKSYVALAR---- 71
Query: 165 KNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
+R N+ RD FTCQYC R LT DHVVP SRGG WEN+VAAC CN RK
Sbjct: 72 SPAFTRYNIYLRDTFTCQYCGLRLPSGGLTFDHVVPRSRGGLSTWENVVAACSPCNLRKA 131
Query: 222 KKTLEEANMQLSRVPKAPKDYDI 244
+T +EA M L P P +++
Sbjct: 132 NRTPDEAEMPLLNEPHRPTRHEL 154
>gi|402820751|ref|ZP_10870315.1| hypothetical protein IMCC14465_15490 [alpha proteobacterium
IMCC14465]
gi|402510397|gb|EJW20662.1| hypothetical protein IMCC14465_15490 [alpha proteobacterium
IMCC14465]
Length = 201
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 86/143 (60%), Gaps = 4/143 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ + F+++ +++ Y+ ++SP + +P+V+ ++ ++ +
Sbjct: 38 LSYYPLSLWAWQDTLKAVFLDRVNIVSEYETKVHSPTTAIRLPSVVSLKTYVKPPQ---- 93
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD+F+CQYC S ++LT DHVVP GG+ WEN+VAAC CN RKG +
Sbjct: 94 YPAFTRFNVFLRDSFSCQYCGSEQDLTFDHVVPRRVGGQTTWENVVAACSPCNLRKGGRL 153
Query: 225 LEEANMQLSRVPKAPKDYDILAI 247
+EA+M P+ P Y++ I
Sbjct: 154 CKEASMFPQHKPRQPTVYELHDI 176
>gi|169628657|ref|YP_001702306.1| HNH endonuclease [Mycobacterium abscessus ATCC 19977]
gi|365869547|ref|ZP_09409094.1| HNH endonuclease precursor [Mycobacterium massiliense CCUG 48898 =
JCM 15300]
gi|418249246|ref|ZP_12875568.1| HNH endonuclease [Mycobacterium abscessus 47J26]
gi|418419800|ref|ZP_12992982.1| HNH endonuclease precursor [Mycobacterium abscessus subsp. bolletii
BD]
gi|419711757|ref|ZP_14239220.1| HNH endonuclease [Mycobacterium abscessus M93]
gi|419714125|ref|ZP_14241543.1| HNH endonuclease [Mycobacterium abscessus M94]
gi|169240624|emb|CAM61652.1| Probable HNH endonuclease precursor [Mycobacterium abscessus]
gi|353450901|gb|EHB99295.1| HNH endonuclease [Mycobacterium abscessus 47J26]
gi|363999004|gb|EHM20210.1| HNH endonuclease precursor [Mycobacterium massiliense CCUG 48898 =
JCM 15300]
gi|364000346|gb|EHM21545.1| HNH endonuclease precursor [Mycobacterium abscessus subsp. bolletii
BD]
gi|382939079|gb|EIC63408.1| HNH endonuclease [Mycobacterium abscessus M93]
gi|382945696|gb|EIC69988.1| HNH endonuclease [Mycobacterium abscessus M94]
Length = 183
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 81/144 (56%), Gaps = 5/144 (3%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLL 156
R L+L+ +Y P+ + +RA+ + KADV+ + I+S S +P+V+R+R +
Sbjct: 17 RVLLLNSTYEPLTALPMRRAVIMLLCGKADVVHDDPAAPIIHSATTSVAVPSVIRLRTFV 76
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R R+ ++R LM+RD F C YC R + TIDHV+P S+GG WEN VA C C
Sbjct: 77 RVPYRARVP--MTRAALMHRDRFRCAYCGGRAD-TIDHVIPRSKGGAHSWENCVACCSSC 133
Query: 217 NSRKGKKTLEEANMQLSRVPKAPK 240
N RK + L E L P PK
Sbjct: 134 NHRKADRLLAELGWSLHTTPMPPK 157
>gi|254421066|ref|ZP_05034790.1| HNH endonuclease domain protein [Brevundimonas sp. BAL3]
gi|196187243|gb|EDX82219.1| HNH endonuclease domain protein [Brevundimonas sp. BAL3]
Length = 186
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 9/152 (5%)
Query: 98 FRGLVLD-----ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRV 152
F LVL+ +SY P+++ W+ A+ + ++ DV+ YD+ + SP+ +P+V+ +
Sbjct: 11 FPALVLNADFRPLSYYPLSLWPWEEAVKAVYQDRVDVVSLYDKVVRSPSMEMQLPSVIAL 70
Query: 153 RHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAA 212
++ + + +R N+ RD F CQYC LT DHV+P S GG WEN+VAA
Sbjct: 71 KNYVDQDR----SPAFTRFNVFLRDGFACQYCGESTELTFDHVIPRSHGGRTTWENIVAA 126
Query: 213 CFKCNSRKGKKTLEEANMQLSRVPKAPKDYDI 244
C CN KG +T +A M + R P P + +
Sbjct: 127 CGPCNLTKGGRTPRQAMMPIRREPYRPNAWQL 158
>gi|86739861|ref|YP_480261.1| HNH endonuclease [Frankia sp. CcI3]
gi|86566723|gb|ABD10532.1| HNH endonuclease [Frankia sp. CcI3]
Length = 171
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 95/172 (55%), Gaps = 14/172 (8%)
Query: 100 GLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ +Y P+ VV +RA+ L +KA ++E Q + S S +P V+R+ ++V
Sbjct: 4 ALVLNATYEPLCVVSQRRALVLVLTDKAVMVESAGQVLRSATASIDVPIVVRLARFVRVP 63
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R ++ L+RK ++ RD+ C YC++ ++DHV+P SRGG WEN+VAAC +CN
Sbjct: 64 YRSQVP--LTRKGVLARDHHRCVYCNAPAT-SLDHVIPRSRGGPHAWENVVAACGRCNHL 120
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
K + + + +L P+AP + AA R+L R+ P W YL
Sbjct: 121 KADRAVADLGWRLRTAPRAP----------SGAAWRILGSRRMDP-RWSAYL 161
>gi|336177494|ref|YP_004582869.1| HNH endonuclease [Frankia symbiont of Datisca glomerata]
gi|334858474|gb|AEH08948.1| HNH endonuclease [Frankia symbiont of Datisca glomerata]
Length = 171
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 97/172 (56%), Gaps = 14/172 (8%)
Query: 100 GLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ +Y P+ VV +RA+ L EKA ++E D+ ++S + +P V+R+ ++V
Sbjct: 4 ALVLNATYEPLCVVSQRRALVLVLTEKAVMVEPGDKVLHSATYTVEVPVVVRLARFVRVP 63
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R ++ L+RK ++ RD+ C YC + ++DHV+P SRGG WEN+VAAC +CN
Sbjct: 64 YRSQVP--LTRKGVLARDHHRCVYCGAPAT-SLDHVIPRSRGGAHVWENVVAACGRCNHL 120
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
K + + + +L P+AP + AA R+L R+ P W +YL
Sbjct: 121 KADRAVADLGWRLRTAPRAP----------SGAAWRILGSRRMDP-RWSRYL 161
>gi|148559200|ref|YP_001259502.1| HNH endonuclease family protein [Brucella ovis ATCC 25840]
gi|148370457|gb|ABQ60436.1| HNH endonuclease family protein [Brucella ovis ATCC 25840]
Length = 190
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 79/140 (56%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+E+ ++ YD+ ++SP+ S IP+V+ ++ VK R
Sbjct: 27 LSYYPLSLWSWQDAIKAVFLERVSIVAEYDRVVSSPSFSMRIPSVICLK---DYVKPPRY 83
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC S +LT DHV+P GGE WEN+VAAC CN RKG
Sbjct: 84 PA-FTRFNVFLRDRFECQYCGSPHDLTFDHVIPRCHGGETTWENVVAACSPCNLRKGGMM 142
Query: 225 LEEANMQLSRVPKAPKDYDI 244
A M + P P D+
Sbjct: 143 PAVAQMWPRQKPAMPTVQDL 162
>gi|404446465|ref|ZP_11011576.1| restriction endonuclease [Mycobacterium vaccae ATCC 25954]
gi|403650422|gb|EJZ05664.1| restriction endonuclease [Mycobacterium vaccae ATCC 25954]
Length = 221
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 82/144 (56%), Gaps = 5/144 (3%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLL 156
R L+L+ ++ P+ + +RA+ + KADV+ + I+S + +P V+R+R +
Sbjct: 55 RVLLLNSTFEPLTALPLRRAVIMLMCGKADVVHDDPVGPVIHSATRAIVVPTVIRLRTFV 114
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R RI ++R LM+RD F C YC ++ + T+DHVVP SRGG WEN VAAC C
Sbjct: 115 RVPYRARIP--MTRAALMHRDRFRCAYCGAKAD-TVDHVVPRSRGGAHSWENCVAACSSC 171
Query: 217 NSRKGKKTLEEANMQLSRVPKAPK 240
N RK + L E + P PK
Sbjct: 172 NHRKADRLLSELGWAMHTTPLPPK 195
>gi|320160404|ref|YP_004173628.1| hypothetical protein ANT_09940 [Anaerolinea thermophila UNI-1]
gi|319994257|dbj|BAJ63028.1| hypothetical protein ANT_09940 [Anaerolinea thermophila UNI-1]
Length = 167
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 84/140 (60%), Gaps = 4/140 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ ++ P++V +RAI L EKA ++ I + + P+V+R L +++
Sbjct: 6 LVLNANFEPIHVCDMRRAIGLLMSEKATMVVNGRGNILTVSRVIPRPSVIR---LQKMIS 62
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRE-NLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R R + L+R+ + RDN+TCQYC +LT+DHV+P GG W N+VAAC CN R
Sbjct: 63 RPRPRLKLTRREVFRRDNYTCQYCGKHTTDLTVDHVIPRHLGGAHCWTNVVAACPACNHR 122
Query: 220 KGKKTLEEANMQLSRVPKAP 239
KG +TLEEA M+L R P P
Sbjct: 123 KGGRTLEEAGMKLLRPPTEP 142
>gi|434404890|ref|YP_007147775.1| restriction endonuclease [Cylindrospermum stagnale PCC 7417]
gi|428259145|gb|AFZ25095.1| restriction endonuclease [Cylindrospermum stagnale PCC 7417]
Length = 177
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 88/142 (61%), Gaps = 5/142 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT---INSPNGSFYIPAVLRVRHLLQ 157
+V +Y P+ V KRAI L +KA+ L+ ++ ++SP+ ++P +R++ +
Sbjct: 13 VVFSQNYLPLCRVNIKRAIVLLVTDKAEALDLPAESGWQVHSPSLVVFVPKHIRLK--IA 70
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
+R ++R+ ++ RD+ +CQYC S + LT+DHV P S+GG W+N+V AC +CN
Sbjct: 71 STERMWKVPPVNRREVLRRDHHSCQYCGSNKRLTLDHVQPRSKGGPHTWDNVVTACERCN 130
Query: 218 SRKGKKTLEEANMQLSRVPKAP 239
SRKG +T EA MQLS PKAP
Sbjct: 131 SRKGDRTPAEAGMQLSTKPKAP 152
>gi|319781317|ref|YP_004140793.1| HNH endonuclease [Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|433773022|ref|YP_007303489.1| restriction endonuclease [Mesorhizobium australicum WSM2073]
gi|317167205|gb|ADV10743.1| HNH endonuclease [Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|433665037|gb|AGB44113.1| restriction endonuclease [Mesorhizobium australicum WSM2073]
Length = 185
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 80/140 (57%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ Y+ ++SP S +P+V+ ++ VK R
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIVAEYEHAVSSPTFSMKLPSVVSLK---AYVKPSR- 77
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC + E+LT DHV+P RGG WEN+VAAC CN RKG
Sbjct: 78 HPAFTRFNVFLRDRFQCQYCGTPEDLTFDHVIPRHRGGATTWENVVAACSPCNLRKGGMM 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
A M + P P +D+
Sbjct: 138 PAHAKMWPLQKPFQPTVHDL 157
>gi|410029669|ref|ZP_11279499.1| restriction endonuclease [Marinilabilia sp. AK2]
Length = 168
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 83/142 (58%), Gaps = 4/142 (2%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQ-TINSPNGSFYIPAVLRVRHLLQ 157
R LVL++ + P+++V ++A+ L +EK L YY+ I + + F PAV+R+
Sbjct: 4 RVLVLNLDHSPISIVSVQKALVLSILEKVSCLSYYESLMIRTVSREFKYPAVIRLNEYKS 63
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
+ + + L+R N+ RD CQYC S ++LTIDH++P S+GG+ W NL+ AC +CN
Sbjct: 64 IPYKGVL---LNRANIFRRDGHQCQYCGSVKHLTIDHIIPKSKGGKTNWVNLITACNRCN 120
Query: 218 SRKGKKTLEEANMQLSRVPKAP 239
KG KT E+ +L P P
Sbjct: 121 VYKGDKTPEQVGFKLKNEPFRP 142
>gi|357023499|ref|ZP_09085690.1| HNH endonuclease [Mesorhizobium amorphae CCNWGS0123]
gi|355544613|gb|EHH13698.1| HNH endonuclease [Mesorhizobium amorphae CCNWGS0123]
Length = 185
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 80/140 (57%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ Y+ ++SP S +P+V+ ++ VK R
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIVAEYEHAVSSPTFSMKLPSVVSLK---AYVKPSR- 77
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC + E+LT DHV+P RGG WEN+VAAC CN RKG
Sbjct: 78 HPAFTRFNVFLRDRFQCQYCGTPEDLTFDHVIPRHRGGATTWENVVAACSPCNLRKGGMM 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
A M + P P +D+
Sbjct: 138 PAHAKMWPLQKPFQPTVHDL 157
>gi|262201969|ref|YP_003273177.1| HNH endonuclease [Gordonia bronchialis DSM 43247]
gi|262085316|gb|ACY21284.1| HNH endonuclease [Gordonia bronchialis DSM 43247]
Length = 205
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 81/144 (56%), Gaps = 5/144 (3%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQ--TINSPNGSFYIPAVLRVRHLL 156
R L+L+ +Y P+ + +RA+ L E+AD++ D ++S + +P+V+R+R +
Sbjct: 39 RVLLLNATYEPLTAISIRRAVVLILRERADIIHADDGGLAVHSAQTTVPVPSVIRLRTYV 98
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R + ++R LM RD F C YC R TIDHVVP SRGG+ W+N VA C C
Sbjct: 99 RVPYRAVVP--MTRTALMRRDRFRCAYCGGRAT-TIDHVVPRSRGGQHGWDNCVACCAGC 155
Query: 217 NSRKGKKTLEEANMQLSRVPKAPK 240
N RK + L E L VP PK
Sbjct: 156 NHRKADRLLGELGWTLRTVPIVPK 179
>gi|288919560|ref|ZP_06413890.1| HNH endonuclease [Frankia sp. EUN1f]
gi|288349066|gb|EFC83313.1| HNH endonuclease [Frankia sp. EUN1f]
Length = 178
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 96/172 (55%), Gaps = 14/172 (8%)
Query: 100 GLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ +Y P+ VV +RA+ L +KA ++E Q + S S +P V+R+ ++V
Sbjct: 4 ALVLNATYEPLCVVSQRRALVLVLTDKAVMVESAGQVLRSTTSSVEVPIVVRLARFVRVP 63
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R ++ L+RK ++ RD+ C YC++ ++DHV+P SRGG WEN+VAAC +CN
Sbjct: 64 YRSQVP--LTRKGVLARDHHRCVYCNAPAT-SLDHVIPRSRGGPHVWENVVAACGRCNHV 120
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
K + + + +L P+AP + AA R+L R+ P W +YL
Sbjct: 121 KADRAVADLGWRLRTAPRAP----------SGAAWRILGSRRMDP-RWSRYL 161
>gi|330813489|ref|YP_004357728.1| HNH endonuclease [Candidatus Pelagibacter sp. IMCC9063]
gi|327486584|gb|AEA80989.1| HNH endonuclease family protein [Candidatus Pelagibacter sp.
IMCC9063]
Length = 189
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 79/137 (57%), Gaps = 4/137 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ CW+ + F+++ +++ YD+ I SP+ S +P+V+ ++ ++ +
Sbjct: 26 LSYYPLSLWCWQDVVRDVFLDRVNIVSEYDREIRSPSFSMKLPSVISLKTFIKPSEHP-- 83
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
N +R N+ RD F+C YC +NLT DH++P S+GG WEN+V AC CN +KG K
Sbjct: 84 --NFTRFNVFLRDKFSCLYCGDVKNLTFDHLIPKSKGGITSWENVVTACTTCNVKKGNKL 141
Query: 225 LEEANMQLSRVPKAPKD 241
E M P P D
Sbjct: 142 CRECGMHPKIKPYRPTD 158
>gi|406662063|ref|ZP_11070169.1| HNH endonuclease [Cecembia lonarensis LW9]
gi|405554050|gb|EKB49176.1| HNH endonuclease [Cecembia lonarensis LW9]
Length = 168
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 82/142 (57%), Gaps = 4/142 (2%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQ-TINSPNGSFYIPAVLRVRHLLQ 157
R LVL++ + P+++V ++A+ L ++K L YY+ + + F PAV+R+
Sbjct: 4 RVLVLNLDHSPISIVSAQKALVLSILDKVSCLSYYESLVVRTVTMEFRYPAVIRLNEYKS 63
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
+ + + L+R N+ RD CQYC S +NLTIDH++P S+GG+ W NL+ AC +CN
Sbjct: 64 IPYKGVL---LNRANIFRRDGHECQYCGSVKNLTIDHIIPKSKGGKTNWMNLITACNRCN 120
Query: 218 SRKGKKTLEEANMQLSRVPKAP 239
KG KT E+ +L P P
Sbjct: 121 IYKGDKTPEQVGFKLRTEPFRP 142
>gi|397730737|ref|ZP_10497493.1| HNH endonuclease family protein [Rhodococcus sp. JVH1]
gi|396933359|gb|EJJ00513.1| HNH endonuclease family protein [Rhodococcus sp. JVH1]
Length = 166
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 87/150 (58%), Gaps = 7/150 (4%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT--INSPNGSFYIPAVLRVRHLLQV 158
L+L+++Y P+ + +RA+ L KAD + Q ++S S +P+V+R+R+ ++V
Sbjct: 2 LLLNVTYEPLTALPARRAVVLMTCGKADTVHEDPQAPVVHSEQWSVQVPSVIRLRNYVRV 61
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
R R+ ++R LM+RD F C YC ++ T+DHVVP SRGGE WEN VA C CN
Sbjct: 62 PYRARVP--MTRAALMHRDRFRCAYCGAKAE-TVDHVVPRSRGGEHSWENCVACCAPCNH 118
Query: 219 RKGKKTLEEANMQL--SRVPKAPKDYDILA 246
RK K L E L S VP + + +LA
Sbjct: 119 RKADKLLSELGWTLRASLVPPSGPHWRLLA 148
>gi|414584555|ref|ZP_11441695.1| hypothetical protein MA5S1215_1498 [Mycobacterium abscessus
5S-1215]
gi|420863526|ref|ZP_15326919.1| hypothetical protein MA4S0303_1881 [Mycobacterium abscessus
4S-0303]
gi|420867925|ref|ZP_15331309.1| hypothetical protein MA4S0726RA_1415 [Mycobacterium abscessus
4S-0726-RA]
gi|420872356|ref|ZP_15335736.1| hypothetical protein MA4S0726RB_0995 [Mycobacterium abscessus
4S-0726-RB]
gi|420877040|ref|ZP_15340410.1| hypothetical protein MA5S0304_0575 [Mycobacterium abscessus
5S-0304]
gi|420881957|ref|ZP_15345321.1| hypothetical protein MA5S0421_0828 [Mycobacterium abscessus
5S-0421]
gi|420888563|ref|ZP_15351916.1| hypothetical protein MA5S0422_1561 [Mycobacterium abscessus
5S-0422]
gi|420893650|ref|ZP_15356992.1| hypothetical protein MA5S0708_1054 [Mycobacterium abscessus
5S-0708]
gi|420898219|ref|ZP_15361555.1| hypothetical protein MA5S0817_0606 [Mycobacterium abscessus
5S-0817]
gi|420904171|ref|ZP_15367491.1| hypothetical protein MA5S1212_0997 [Mycobacterium abscessus
5S-1212]
gi|420909140|ref|ZP_15372453.1| hypothetical protein MA6G0125R_0642 [Mycobacterium abscessus
6G-0125-R]
gi|420919912|ref|ZP_15383210.1| hypothetical protein MA6G0728S_0507 [Mycobacterium abscessus
6G-0728-S]
gi|420926411|ref|ZP_15389696.1| hypothetical protein MA6G1108_1602 [Mycobacterium abscessus
6G-1108]
gi|420930716|ref|ZP_15393992.1| hypothetical protein MM1S1510930_1534 [Mycobacterium massiliense
1S-151-0930]
gi|420939862|ref|ZP_15403131.1| hypothetical protein MM1S1520914_1742 [Mycobacterium massiliense
1S-152-0914]
gi|420940968|ref|ZP_15404230.1| hypothetical protein MM1S1530915_1080 [Mycobacterium massiliense
1S-153-0915]
gi|420945651|ref|ZP_15408904.1| hypothetical protein MM1S1540310_1094 [Mycobacterium massiliense
1S-154-0310]
gi|420951229|ref|ZP_15414475.1| hypothetical protein MM2B0626_1453 [Mycobacterium massiliense
2B-0626]
gi|420955401|ref|ZP_15418640.1| hypothetical protein MM2B0107_0792 [Mycobacterium massiliense
2B-0107]
gi|420961016|ref|ZP_15424244.1| hypothetical protein MM2B1231_1516 [Mycobacterium massiliense
2B-1231]
gi|420971287|ref|ZP_15434483.1| hypothetical protein MA5S0921_1307 [Mycobacterium abscessus
5S-0921]
gi|420976756|ref|ZP_15439938.1| hypothetical protein MA6G0212_1668 [Mycobacterium abscessus
6G-0212]
gi|420986653|ref|ZP_15449814.1| hypothetical protein MA4S0206_0818 [Mycobacterium abscessus
4S-0206]
gi|420991367|ref|ZP_15454519.1| hypothetical protein MM2B0307_0776 [Mycobacterium massiliense
2B-0307]
gi|420997205|ref|ZP_15460345.1| hypothetical protein MM2B0912R_1855 [Mycobacterium massiliense
2B-0912-R]
gi|421001638|ref|ZP_15464768.1| hypothetical protein MM2B0912S_1456 [Mycobacterium massiliense
2B-0912-S]
gi|421006661|ref|ZP_15469775.1| hypothetical protein MA3A0119R_1649 [Mycobacterium abscessus
3A-0119-R]
gi|421016997|ref|ZP_15480062.1| hypothetical protein MA3A0122S_1218 [Mycobacterium abscessus
3A-0122-S]
gi|421022996|ref|ZP_15486044.1| hypothetical protein MA3A0731_1613 [Mycobacterium abscessus
3A-0731]
gi|421038403|ref|ZP_15501414.1| hypothetical protein MA4S0116R_1659 [Mycobacterium abscessus
4S-0116-R]
gi|421042715|ref|ZP_15505719.1| hypothetical protein MA4S0116S_0548 [Mycobacterium abscessus
4S-0116-S]
gi|421048409|ref|ZP_15511405.1| hypothetical protein MMCCUG48898_1402 [Mycobacterium massiliense
CCUG 48898 = JCM 15300]
gi|392071618|gb|EIT97460.1| hypothetical protein MA4S0726RA_1415 [Mycobacterium abscessus
4S-0726-RA]
gi|392074046|gb|EIT99884.1| hypothetical protein MA4S0303_1881 [Mycobacterium abscessus
4S-0303]
gi|392076545|gb|EIU02378.1| hypothetical protein MA4S0726RB_0995 [Mycobacterium abscessus
4S-0726-RB]
gi|392089661|gb|EIU15478.1| hypothetical protein MA5S0304_0575 [Mycobacterium abscessus
5S-0304]
gi|392091012|gb|EIU16823.1| hypothetical protein MA5S0421_0828 [Mycobacterium abscessus
5S-0421]
gi|392092177|gb|EIU17986.1| hypothetical protein MA5S0422_1561 [Mycobacterium abscessus
5S-0422]
gi|392102240|gb|EIU28027.1| hypothetical protein MA5S0708_1054 [Mycobacterium abscessus
5S-0708]
gi|392107460|gb|EIU33242.1| hypothetical protein MA5S0817_0606 [Mycobacterium abscessus
5S-0817]
gi|392107995|gb|EIU33776.1| hypothetical protein MA5S1212_0997 [Mycobacterium abscessus
5S-1212]
gi|392119707|gb|EIU45475.1| hypothetical protein MA5S1215_1498 [Mycobacterium abscessus
5S-1215]
gi|392121514|gb|EIU47279.1| hypothetical protein MA6G0125R_0642 [Mycobacterium abscessus
6G-0125-R]
gi|392133917|gb|EIU59659.1| hypothetical protein MA6G0728S_0507 [Mycobacterium abscessus
6G-0728-S]
gi|392138819|gb|EIU64552.1| hypothetical protein MA6G1108_1602 [Mycobacterium abscessus
6G-1108]
gi|392139734|gb|EIU65466.1| hypothetical protein MM1S1510930_1534 [Mycobacterium massiliense
1S-151-0930]
gi|392145377|gb|EIU71102.1| hypothetical protein MM1S1520914_1742 [Mycobacterium massiliense
1S-152-0914]
gi|392151755|gb|EIU77463.1| hypothetical protein MM1S1530915_1080 [Mycobacterium massiliense
1S-153-0915]
gi|392158859|gb|EIU84555.1| hypothetical protein MM1S1540310_1094 [Mycobacterium massiliense
1S-154-0310]
gi|392161006|gb|EIU86697.1| hypothetical protein MM2B0626_1453 [Mycobacterium massiliense
2B-0626]
gi|392171015|gb|EIU96692.1| hypothetical protein MA6G0212_1668 [Mycobacterium abscessus
6G-0212]
gi|392171694|gb|EIU97370.1| hypothetical protein MA5S0921_1307 [Mycobacterium abscessus
5S-0921]
gi|392188070|gb|EIV13709.1| hypothetical protein MA4S0206_0818 [Mycobacterium abscessus
4S-0206]
gi|392189449|gb|EIV15083.1| hypothetical protein MM2B0912R_1855 [Mycobacterium massiliense
2B-0912-R]
gi|392190378|gb|EIV16010.1| hypothetical protein MM2B0307_0776 [Mycobacterium massiliense
2B-0307]
gi|392200456|gb|EIV26062.1| hypothetical protein MM2B0912S_1456 [Mycobacterium massiliense
2B-0912-S]
gi|392201204|gb|EIV26805.1| hypothetical protein MA3A0119R_1649 [Mycobacterium abscessus
3A-0119-R]
gi|392213800|gb|EIV39354.1| hypothetical protein MA3A0122S_1218 [Mycobacterium abscessus
3A-0122-S]
gi|392215693|gb|EIV41241.1| hypothetical protein MA3A0731_1613 [Mycobacterium abscessus
3A-0731]
gi|392226617|gb|EIV52131.1| hypothetical protein MA4S0116R_1659 [Mycobacterium abscessus
4S-0116-R]
gi|392241298|gb|EIV66787.1| hypothetical protein MA4S0116S_0548 [Mycobacterium abscessus
4S-0116-S]
gi|392242574|gb|EIV68061.1| hypothetical protein MMCCUG48898_1402 [Mycobacterium massiliense
CCUG 48898]
gi|392254081|gb|EIV79548.1| hypothetical protein MM2B1231_1516 [Mycobacterium massiliense
2B-1231]
gi|392255929|gb|EIV81390.1| hypothetical protein MM2B0107_0792 [Mycobacterium massiliense
2B-0107]
Length = 166
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 80/142 (56%), Gaps = 5/142 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLLQV 158
L+L+ +Y P+ + +RA+ + KADV+ + I+S S +P+V+R+R ++V
Sbjct: 2 LLLNSTYEPLTALPMRRAVIMLLCGKADVVHDDPAAPIIHSATTSVAVPSVIRLRTFVRV 61
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
R R+ ++R LM+RD F C YC R + TIDHV+P S+GG WEN VA C CN
Sbjct: 62 PYRARVP--MTRAALMHRDRFRCAYCGGRAD-TIDHVIPRSKGGAHSWENCVACCSSCNH 118
Query: 219 RKGKKTLEEANMQLSRVPKAPK 240
RK + L E L P PK
Sbjct: 119 RKADRLLAELGWSLHTTPMPPK 140
>gi|296536086|ref|ZP_06898220.1| HNH endonuclease [Roseomonas cervicalis ATCC 49957]
gi|296263583|gb|EFH10074.1| HNH endonuclease [Roseomonas cervicalis ATCC 49957]
Length = 196
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 85/155 (54%), Gaps = 12/155 (7%)
Query: 98 FRGLVLD-----ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRV 152
F LVL+ +SY P+++ W+ A+ ++++ VL YD + SP + +P+V+ +
Sbjct: 18 FPALVLNADFRPLSYFPLSLWSWQDAVKAVYLDRVSVLSEYDMLVRSPRHAIRLPSVIAL 77
Query: 153 RHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENL 209
R + +R +R N+ RD+F+C YC + LT DHV+P SRGG WEN+
Sbjct: 78 REYIPSARR----PAFTRFNVFLRDSFSCVYCGDERPTQELTFDHVIPRSRGGRTSWENV 133
Query: 210 VAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDI 244
V AC CN RKG K E M +VP+ P +++
Sbjct: 134 VTACGPCNLRKGSKLPAEIRMFPRQVPRQPTSWEL 168
>gi|114704532|ref|ZP_01437440.1| putative endonuclease protein [Fulvimarina pelagi HTCC2506]
gi|114539317|gb|EAU42437.1| putative endonuclease protein [Fulvimarina pelagi HTCC2506]
Length = 188
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 80/140 (57%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ ++ YD+ ++SP S +P+V+ ++ ++ +
Sbjct: 24 LSYYPLSLWSWQDAIKAVFLDRVTIVAEYDRAVHSPTASMRLPSVVCLKSYVKPARNPA- 82
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC +LT DHVVP S+GG WEN+VAAC CN RKG
Sbjct: 83 ---FTRFNVFLRDRFQCQYCGDHNDLTFDHVVPRSKGGLTTWENVVAACSPCNLRKGGHM 139
Query: 225 LEEANMQLSRVPKAPKDYDI 244
+ A M + P P +D+
Sbjct: 140 PKAAGMFPQQKPYQPTVHDL 159
>gi|443476329|ref|ZP_21066241.1| HNH endonuclease [Pseudanabaena biceps PCC 7429]
gi|443018722|gb|ELS32926.1| HNH endonuclease [Pseudanabaena biceps PCC 7429]
Length = 177
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 81/144 (56%), Gaps = 9/144 (6%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT---INSPNGSFYIPAVLRVRHLLQ 157
+V +Y PV + KRAI L +A+ LE Q I SP +P +R L
Sbjct: 17 VVFSQNYLPVGQIDIKRAIALLITGRAEPLEMLSQQTWQIISPQLVLQVPEHIR----LT 72
Query: 158 VVKRRRI--KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFK 215
+ K R ++R+ ++ RDN TCQYC S + LTIDHV+P ++GG WEN+V AC
Sbjct: 73 LTKSERFWRVPPVARREVLRRDNHTCQYCGSNKKLTIDHVIPRAKGGLNTWENVVIACES 132
Query: 216 CNSRKGKKTLEEANMQLSRVPKAP 239
CN RKG +T +EANM L PKAP
Sbjct: 133 CNHRKGNRTPQEANMPLRIKPKAP 156
>gi|54023280|ref|YP_117522.1| endonuclease [Nocardia farcinica IFM 10152]
gi|54014788|dbj|BAD56158.1| putative endonuclease [Nocardia farcinica IFM 10152]
Length = 243
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 79/136 (58%), Gaps = 5/136 (3%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQ--TINSPNGSFYIPAVLRVRHLL 156
R L+L+ +Y P+ + +RA+ L +KAD + + + ++S +P+V+R+R +
Sbjct: 77 RVLLLNATYEPLTALSARRAVVLLICDKADTVHHNPEGPVVHSAGAEVAVPSVIRLRTYV 136
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R R+ ++R LM+RD + C YC + TIDHVVP SRGGE WEN VA+C C
Sbjct: 137 RVPYRARVP--MTRAALMHRDRYRCGYCGGKAE-TIDHVVPRSRGGEHSWENCVASCAPC 193
Query: 217 NSRKGKKTLEEANMQL 232
N RK K L E L
Sbjct: 194 NHRKADKLLSELGWTL 209
>gi|158317069|ref|YP_001509577.1| HNH endonuclease [Frankia sp. EAN1pec]
gi|158112474|gb|ABW14671.1| HNH endonuclease [Frankia sp. EAN1pec]
Length = 173
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 96/172 (55%), Gaps = 14/172 (8%)
Query: 100 GLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ +Y P+ VV +RA+ L +KA ++E Q + S + +P V+R+ ++V
Sbjct: 4 ALVLNATYEPLCVVSQRRALVLVLTDKAVMVESAGQVLRSTTAAVEVPIVVRLARFVRVP 63
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R +I L+RK ++ RD+ C YC++ ++DHV+P SRGG WEN+VAAC +CN
Sbjct: 64 YRSQIP--LTRKGVLARDHHRCVYCNAPAT-SLDHVIPRSRGGPHVWENVVAACGRCNHV 120
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
K + + + +L P+AP + AA R+L R+ P W +YL
Sbjct: 121 KADRAVADLGWRLRTAPRAP----------SGAAWRILGSRRMDP-RWSRYL 161
>gi|375099707|ref|ZP_09745970.1| restriction endonuclease [Saccharomonospora cyanea NA-134]
gi|374660439|gb|EHR60317.1| restriction endonuclease [Saccharomonospora cyanea NA-134]
Length = 241
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 84/144 (58%), Gaps = 5/144 (3%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLL 156
R L+L+ ++ P+ + +RAI L KA+V+ + T++S + +P+V+R+ +
Sbjct: 75 RVLLLNATFEPLTALPLRRAIVLLVCGKAEVVHEDPAGITLHSATMTVELPSVIRLSRYV 134
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R ++ L+R LM+RD F C YC R TIDHVVP SRGG WEN VA C KC
Sbjct: 135 RVPYRAQVP--LTRAGLMHRDRFRCAYCGGRAE-TIDHVVPRSRGGAHSWENCVACCAKC 191
Query: 217 NSRKGKKTLEEANMQLSRVPKAPK 240
N RK K L E +L VP+ P+
Sbjct: 192 NHRKADKLLSELGWRLRIVPREPR 215
>gi|296393798|ref|YP_003658682.1| HNH endonuclease [Segniliparus rotundus DSM 44985]
gi|296180945|gb|ADG97851.1| HNH endonuclease [Segniliparus rotundus DSM 44985]
Length = 183
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 89/171 (52%), Gaps = 15/171 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL++ + P+NV+ +RA+ L E+A+++E S +P+V+R+ ++V
Sbjct: 14 LVLNVGFEPLNVIPHRRAVVLVCSERAELVEPTALVARSERHELPVPSVIRLARYVRVPY 73
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R ++ RD C YC + TIDHV+P SRGG+ W N+VAAC KCN +K
Sbjct: 74 RATVP--LTRTAVIARDKHRCVYCGGKPE-TIDHVLPRSRGGQHVWTNVVAACQKCNHKK 130
Query: 221 GKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
G + L E L P APK A R V P WRQYL
Sbjct: 131 GSRLLAELGWTLREAPAAPK----------GTAPRF--VSGELPSAWRQYL 169
>gi|162449982|ref|YP_001612349.1| HNH endonuclease [Sorangium cellulosum So ce56]
gi|161160564|emb|CAN91869.1| HNH endonuclease family protein [Sorangium cellulosum So ce56]
Length = 221
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 93/185 (50%), Gaps = 31/185 (16%)
Query: 84 EEYDSDEEFDELACFRG--------LVLDISYRPVNVVCWKRAICLEFM-------EKAD 128
EE D + F C R LV++ ++PV + +RA L F E D
Sbjct: 15 EELDLGDGFSGFRCERRTEPLDLPVLVVNRFFQPVQITTARRAFLLLFGGAALAVDEVGD 74
Query: 129 VLEYY----------DQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDN 178
+ ++ D + GS +P VL HL + + RR L+RKN+M RD
Sbjct: 75 LHDFSAWRSLPVREKDDGLPVVGGSLRVPRVL---HLRRYDRMRRPTIRLTRKNVMLRDT 131
Query: 179 FTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRV 235
CQYC+ R +L IDHV+P SRGGE WENLV AC CN RKG +T +EA+M+L R
Sbjct: 132 HQCQYCARRPPVRDLNIDHVLPRSRGGEDTWENLVTACRTCNLRKGWRTPDEASMRLIRQ 191
Query: 236 PKAPK 240
P P+
Sbjct: 192 PLPPR 196
>gi|433456492|ref|ZP_20414533.1| restriction endonuclease [Arthrobacter crystallopoietes BAB-32]
gi|432196165|gb|ELK52643.1| restriction endonuclease [Arthrobacter crystallopoietes BAB-32]
Length = 166
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 80/142 (56%), Gaps = 3/142 (2%)
Query: 98 FRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQ 157
R LVL+ Y P+ VV ++RA+ L KA V+ + PN P+V+ + ++
Sbjct: 1 MRTLVLNAGYEPLAVVTFRRALLLVLTGKASVIAEDGDPVVGPNDILGRPSVILLNRYIK 60
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
+ R+ ++R+ ++ RD + C YC N T+DHV P SRGGE WENLVA C +CN
Sbjct: 61 IPYRQ--DTAVTRRGVLRRDGYLCAYCGKTAN-TVDHVKPRSRGGEDSWENLVACCLRCN 117
Query: 218 SRKGKKTLEEANMQLSRVPKAP 239
+ KG +TL + L VP+AP
Sbjct: 118 NAKGDRTLGQLGWHLRIVPRAP 139
>gi|218682266|ref|ZP_03529867.1| HNH endonuclease [Rhizobium etli CIAT 894]
Length = 228
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 81/132 (61%), Gaps = 4/132 (3%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ Y+ +++SP+ S +P+V+ ++ +Q +
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIIAEYEHSVSSPSFSMRLPSVVCLKTYVQPSR---- 77
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC + ++LT DHV+P + GGE WEN+VAAC CN RKG K
Sbjct: 78 NPAFTRFNVFLRDRFECQYCGAHDDLTFDHVIPRAHGGETTWENVVAACSPCNLRKGSKL 137
Query: 225 LEEANMQLSRVP 236
++A R P
Sbjct: 138 PKQAACSHRRSP 149
>gi|375094331|ref|ZP_09740596.1| restriction endonuclease [Saccharomonospora marina XMU15]
gi|374655064|gb|EHR49897.1| restriction endonuclease [Saccharomonospora marina XMU15]
Length = 237
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 85/143 (59%), Gaps = 5/143 (3%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLL 156
R L+L+ ++ P+ + +RAI L KA+V+ + T+++ + +P+V+R+ +
Sbjct: 71 RVLLLNATFEPLTALPLRRAIVLLVCGKAEVVHEDPAGLTLHAATMTVEVPSVIRLSTYV 130
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R ++ L+R LM+RD F C YC +R TIDHVVP SRGG W+N VA C KC
Sbjct: 131 RVPYRAQVP--LTRAGLMHRDRFRCAYCGARAE-TIDHVVPRSRGGAHSWQNCVACCAKC 187
Query: 217 NSRKGKKTLEEANMQLSRVPKAP 239
N RK K L E +L VP+AP
Sbjct: 188 NHRKADKLLSELGWRLRVVPQAP 210
>gi|428307865|ref|YP_007144690.1| HNH endonuclease [Crinalium epipsammum PCC 9333]
gi|428249400|gb|AFZ15180.1| HNH endonuclease [Crinalium epipsammum PCC 9333]
Length = 172
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 83/144 (57%), Gaps = 9/144 (6%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQ---TINSPNGSFYIPAVLRVRHLLQ 157
+V +Y PV+ V KRAI L KA+ L+++ + SPN Y+P +R L
Sbjct: 13 VVFSKNYLPVSRVNIKRAIILLVTGKAEPLDFWSGIGIAVRSPNQVVYVPGQIR----LT 68
Query: 158 VVKRRRIKN--NLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFK 215
R+ ++R+ ++ RD CQYC S ++LT+DH++P S+GG+ W+N+V AC
Sbjct: 69 FASSERVWKVPPVNRREVLRRDRHCCQYCGSTKHLTLDHIIPRSKGGKHTWDNVVTACSS 128
Query: 216 CNSRKGKKTLEEANMQLSRVPKAP 239
CN RKG +TL +A M L PKAP
Sbjct: 129 CNGRKGDRTLIQAGMTLRTHPKAP 152
>gi|357386016|ref|YP_004900740.1| HNH endonuclease family protein [Pelagibacterium halotolerans B2]
gi|351594653|gb|AEQ52990.1| HNH endonuclease family protein [Pelagibacterium halotolerans B2]
Length = 185
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 80/140 (57%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI +++ ++ YD+ + SP+ +P+V+ ++ +Q K
Sbjct: 22 LSYYPLSLWNWQDAIKAVCLDRVHIVSEYDKVVRSPSFEMRLPSVISLKDYVQPAK---- 77
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC SR +LT DHV+P S+GG WEN+VAAC CN RK +T
Sbjct: 78 YPAFTRFNVFLRDRFQCQYCGSRHDLTFDHVLPRSKGGRTTWENIVAACSPCNLRKANRT 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
E M + P P +D+
Sbjct: 138 PREIGMIPRQKPYQPTVHDL 157
>gi|390450198|ref|ZP_10235792.1| HNH endonuclease [Nitratireductor aquibiodomus RA22]
gi|389662763|gb|EIM74317.1| HNH endonuclease [Nitratireductor aquibiodomus RA22]
Length = 211
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 82/140 (58%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ YDQ ++SP+ + +P+V+ ++ VK R
Sbjct: 48 LSYYPLSLWSWQDAIKAVFLDRVNIVAEYDQQVSSPSFAMRLPSVISLK---TYVKPSRY 104
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC +RE+LT DHV+P GG WEN+VAAC CN +KG
Sbjct: 105 PA-FTRFNVFLRDRFQCQYCGTREDLTFDHVIPRRLGGVTSWENVVAACSPCNLKKGGVM 163
Query: 225 LEEANMQLSRVPKAPKDYDI 244
A M + P P +D+
Sbjct: 164 PARAKMWPQQKPYRPTVHDL 183
>gi|337266155|ref|YP_004610210.1| HNH endonuclease [Mesorhizobium opportunistum WSM2075]
gi|336026465|gb|AEH86116.1| HNH endonuclease [Mesorhizobium opportunistum WSM2075]
Length = 185
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ Y+ ++SP S +P+V+ ++ VK R
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIVAEYEHAVSSPTFSMKLPSVVSLK---AYVKPSR- 77
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC + ++LT DHV+P RGG WEN+VAAC CN RKG
Sbjct: 78 HPAFTRFNVFLRDRFQCQYCGTPDDLTFDHVIPRHRGGATTWENVVAACSPCNLRKGGMM 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
+A M + P P +D+
Sbjct: 138 PAQAKMWPLQKPYQPTVHDL 157
>gi|153008603|ref|YP_001369818.1| HNH endonuclease [Ochrobactrum anthropi ATCC 49188]
gi|404320427|ref|ZP_10968360.1| HNH endonuclease [Ochrobactrum anthropi CTS-325]
gi|151560491|gb|ABS13989.1| HNH endonuclease [Ochrobactrum anthropi ATCC 49188]
Length = 190
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 79/140 (56%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+E+ +++ YD ++SP+ S +P+V+ ++ VK R
Sbjct: 27 LSYYPLSLWSWQDAIKAVFLERVNIVAEYDHIVSSPSFSMRVPSVICLK---DYVKPPRY 83
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC S +LT DHV P GGE WEN+VAAC CN RKG
Sbjct: 84 PA-FTRFNVFLRDRFECQYCGSPHDLTFDHVTPRCHGGETTWENVVAACSPCNLRKGGMM 142
Query: 225 LEEANMQLSRVPKAPKDYDI 244
A+M + P P D+
Sbjct: 143 PAVAHMWPRQKPAMPTVQDL 162
>gi|325002396|ref|ZP_08123508.1| HNH endonuclease [Pseudonocardia sp. P1]
Length = 217
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 84/144 (58%), Gaps = 5/144 (3%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLE--YYDQTINSPNGSFYIPAVLRVRHLL 156
R L+L+ S+ P+ VV KRAICL KA+ L+ + +S + + P+VLR+ +
Sbjct: 53 RVLLLNASFEPLAVVTSKRAICLLLSGKAECLQEALEGTSFHSESLTLPAPSVLRLSRYV 112
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V RR + ++R ++ RD+ C YC+ R + TIDHV+P SRGG WEN VAAC C
Sbjct: 113 RVPYRRAVP--MTRAGVLRRDSRRCAYCTKRAD-TIDHVIPRSRGGAHSWENCVAACKAC 169
Query: 217 NSRKGKKTLEEANMQLSRVPKAPK 240
NSRK + +EE L P PK
Sbjct: 170 NSRKADRLVEEIGWTLRTKPGPPK 193
>gi|254423886|ref|ZP_05037604.1| HNH endonuclease domain protein [Synechococcus sp. PCC 7335]
gi|196191375|gb|EDX86339.1| HNH endonuclease domain protein [Synechococcus sp. PCC 7335]
Length = 143
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 85/147 (57%), Gaps = 15/147 (10%)
Query: 126 KADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCS 185
KA+ +E ++ I F +P V+R+RH +++ + L+R+NL++RDN +CQYC
Sbjct: 7 KAEQIEQREEQIYP---DFPLPTVIRLRHYVRIPYK---DIPLTRRNLLHRDNHSCQYCG 60
Query: 186 -SRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDI 244
+ E LT+DHV+P SRGG WEN+V+AC +CN +KG +T EA M L+ P+ P
Sbjct: 61 YTGETLTLDHVIPRSRGGGDSWENIVSACVRCNVKKGSRTPREAEMPLANQPRKPHSSLY 120
Query: 245 LAIPLTSAAIRMLRVRKGTPVEWRQYL 271
I VR G EWR+Y+
Sbjct: 121 FEI--------SRHVRGGVHQEWRRYV 139
>gi|21673556|ref|NP_661621.1| HNH endonuclease [Chlorobium tepidum TLS]
gi|21646667|gb|AAM71963.1| HNH endonuclease family protein [Chlorobium tepidum TLS]
Length = 170
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 89/147 (60%), Gaps = 5/147 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKAD-VLEYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ SY P+++ + A+ L F KA V + + I + +F +P+++R+ +++
Sbjct: 9 LVLNASYEPLSICDARNAVLLLFCGKAMMVASHPEHRIRTVTENFPLPSIVRLMVYVRID 68
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRE-NLTIDHVVPASRGGEWKWENLVAACFKCNS 218
R + L+RKNL RD F CQYC ++ +LT+DHV+P SRGGE WENL+ AC CN+
Sbjct: 69 YRGAV---LNRKNLFRRDGFRCQYCGCKDGSLTVDHVMPKSRGGEDTWENLITACKSCNT 125
Query: 219 RKGKKTLEEANMQLSRVPKAPKDYDIL 245
+KG +T EA M + P P + ++
Sbjct: 126 KKGNRTPSEAGMAMLNKPCRPSNITLM 152
>gi|379707556|ref|YP_005262761.1| putative endonuclease [Nocardia cyriacigeorgica GUH-2]
gi|374845055|emb|CCF62119.1| putative endonuclease [Nocardia cyriacigeorgica GUH-2]
Length = 199
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 82/144 (56%), Gaps = 5/144 (3%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQ--TINSPNGSFYIPAVLRVRHLL 156
R L+L+ +Y P+ + +RA+ L +KAD + + + ++S S IP+V+R+R +
Sbjct: 33 RVLLLNATYEPLTALSARRAVVLLICDKADTVHHDPEGPIVHSAGSSLAIPSVIRLRTYV 92
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R R+ ++R LM RD + C YC + TIDHVVP SRGGE WEN VA+C C
Sbjct: 93 RVPYRARVP--MTRAALMQRDRYRCGYCGGKAE-TIDHVVPRSRGGEHSWENCVASCAPC 149
Query: 217 NSRKGKKTLEEANMQLSRVPKAPK 240
N RK K L E L +PK
Sbjct: 150 NHRKADKLLSELGWTLRAPLVSPK 173
>gi|239832721|ref|ZP_04681050.1| HNH endonuclease [Ochrobactrum intermedium LMG 3301]
gi|239824988|gb|EEQ96556.1| HNH endonuclease [Ochrobactrum intermedium LMG 3301]
Length = 207
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 79/140 (56%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+E+ +++ YD ++SP+ S +P+V+ ++ VK R
Sbjct: 44 LSYYPLSLWSWQDAIKAVFLERVNIVAEYDHIVSSPSFSMRVPSVICLK---DYVKPPRY 100
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC S +LT DHV P GGE WEN+VAAC CN RKG
Sbjct: 101 PA-FTRFNVFLRDRFECQYCGSPHDLTFDHVTPRCHGGETTWENVVAACSPCNLRKGGMM 159
Query: 225 LEEANMQLSRVPKAPKDYDI 244
A+M + P P D+
Sbjct: 160 PAVAHMWPRQKPVMPTVQDL 179
>gi|257055232|ref|YP_003133064.1| restriction endonuclease [Saccharomonospora viridis DSM 43017]
gi|256585104|gb|ACU96237.1| restriction endonuclease [Saccharomonospora viridis DSM 43017]
Length = 166
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 84/143 (58%), Gaps = 7/143 (4%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT---INSPNGSFYIPAVLRVRHLLQ 157
L+L+ ++ P+ + +RAI L KA+++ + D T + S + +P+V+R+ ++
Sbjct: 2 LLLNATFEPLTALPLRRAIVLLVCGKAEIV-HEDPTGLLLRSATMTVGVPSVIRLSRYVR 60
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
V R R+ L+R LMYRD F C YC + TIDHVVP SRGG WEN VA C KCN
Sbjct: 61 VPYRTRVP--LTRAGLMYRDRFRCAYCGGKAE-TIDHVVPRSRGGAHSWENCVACCAKCN 117
Query: 218 SRKGKKTLEEANMQLSRVPKAPK 240
RK K+L E +L VP+ P+
Sbjct: 118 HRKADKSLSELGWRLRVVPREPR 140
>gi|50955346|ref|YP_062634.1| hypothetical protein Lxx17860 [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|50951828|gb|AAT89529.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str.
CTCB07]
Length = 165
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 92/175 (52%), Gaps = 15/175 (8%)
Query: 98 FRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEY-YDQTINSPNGSFYIPAVLRVRHLL 156
+ LVL+ Y P+ VV +KRAI L KA VLE D + S GS+ P+V+ + +
Sbjct: 1 MKTLVLNAGYEPLAVVSFKRAIVLVMNHKATVLESDRDHPVWSIAGSWDRPSVILLTRYV 60
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
++ R + +SR+ ++ RD C YC + TIDHV+P SRGG WENLVA C +C
Sbjct: 61 RIPHGRAVP--VSRRGVLRRDMHRCAYCG-KSATTIDHVLPRSRGGRDSWENLVACCLRC 117
Query: 217 NSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
N+ K KT E LS P AP D A ++R +G EW+ YL
Sbjct: 118 NNVKSDKTPGEMGWTLSFTPYAPHD-----------ASWVVRGTEGALAEWQGYL 161
>gi|453383319|dbj|GAC82220.1| hypothetical protein GP2_001_00730 [Gordonia paraffinivorans NBRC
108238]
Length = 202
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 87/161 (54%), Gaps = 5/161 (3%)
Query: 82 ESEEYDSDEEFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYD--QTINS 139
+S + +++ A R L+L+ +Y P++ V +RA+ L +AD++ + + + S
Sbjct: 19 DSSDPEAEHAPRTWARRRVLLLNATYEPLSAVTIRRAVVLMLRGRADLVHADESGEALRS 78
Query: 140 PNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPAS 199
+ +P V+R+R ++V R + L+R LM RD F C YC R TIDHVVP S
Sbjct: 79 AATAVPVPTVIRLRQYVRVPYRASVP--LTRAGLMRRDRFRCGYCG-RPATTIDHVVPRS 135
Query: 200 RGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPK 240
RGG WEN VA+C CN RK + L E L P APK
Sbjct: 136 RGGAHTWENCVASCASCNHRKADRLLSELGWTLRTRPAAPK 176
>gi|86608433|ref|YP_477195.1| HNH endonuclease domain-containing protein [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86556975|gb|ABD01932.1| HNH endonuclease domain protein [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 172
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTI---NSPNGSFYIPAVLRVRHLLQ 157
+V +Y P++ V KRAI L KA+ L + + SP+ +P +R+ ++
Sbjct: 13 VVFSQNYLPISRVNIKRAIVLLLTGKAEPLSMMNVPVWKVRSPSQVIEVPEHIRL--TIK 70
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
+R ++R+ ++ RD+ TCQYC + NLT+DHVVP S+GG W+N+V AC +CN
Sbjct: 71 GKERAWRVPPVNRREVLRRDHHTCQYCGTTHNLTLDHVVPLSKGGSHSWDNVVTACERCN 130
Query: 218 SRKGKKTLEEANMQLSRVPKAP 239
RKG +T EEANM L P+AP
Sbjct: 131 QRKGNRTPEEANMPLRSKPRAP 152
>gi|323359220|ref|YP_004225616.1| restriction endonuclease [Microbacterium testaceum StLB037]
gi|323275591|dbj|BAJ75736.1| restriction endonuclease [Microbacterium testaceum StLB037]
Length = 165
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 88/144 (61%), Gaps = 4/144 (2%)
Query: 98 FRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQ-TINSPNGSFYIPAVLRVRHLL 156
R LVL+ Y P+ VV +KRA+ L EKA V+E D+ + + G++ PAV+ + +
Sbjct: 1 MRTLVLNAGYEPLAVVSFKRALVLVMNEKATVVECVDEDPVWAAGGTYDRPAVIILTRYI 60
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R++ ++R+ ++ RD C YC + TIDHV+P SRGG+ WENLVA C +C
Sbjct: 61 RVPGARQVP--VTRRGVLRRDAHRCGYCGKTAS-TIDHVLPRSRGGKDTWENLVACCLRC 117
Query: 217 NSRKGKKTLEEANMQLSRVPKAPK 240
N+ KG +T +E + +L +P P+
Sbjct: 118 NNVKGDRTPQEMSWELKIIPAPPR 141
>gi|381398286|ref|ZP_09923690.1| HNH endonuclease [Microbacterium laevaniformans OR221]
gi|380774252|gb|EIC07552.1| HNH endonuclease [Microbacterium laevaniformans OR221]
Length = 165
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 84/144 (58%), Gaps = 4/144 (2%)
Query: 98 FRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYD-QTINSPNGSFYIPAVLRVRHLL 156
R LVL+ Y P+ VV +KRA+ L EKA V+E D + GS PAV+ + +
Sbjct: 1 MRTLVLNAGYEPLAVVSFKRALVLVMNEKATVIERMDGNPVWGIRGSCDRPAVIVLTRYV 60
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V RR+ ++R+ ++ RD C YC + TIDHV+P SRGG WENLVAAC +C
Sbjct: 61 RVPGARRVP--VTRRGVLRRDAHRCAYCG-KGATTIDHVLPRSRGGADSWENLVAACLRC 117
Query: 217 NSRKGKKTLEEANMQLSRVPKAPK 240
N+ KG +T +E +L P+ P+
Sbjct: 118 NNMKGDRTPQEMGWELRWAPQPPR 141
>gi|90420262|ref|ZP_01228170.1| HNH endonuclease [Aurantimonas manganoxydans SI85-9A1]
gi|90335596|gb|EAS49346.1| HNH endonuclease [Aurantimonas manganoxydans SI85-9A1]
Length = 186
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 80/140 (57%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ F+++ +L YD+ ++SP S +P+V+ ++ ++ +
Sbjct: 22 LSYYPLSLWSWQDAVKAVFLDRVTILAEYDRAVHSPTYSMRLPSVVCLKTYIKPAR---- 77
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC S LT DHV+P SRGG WEN+VAAC CN +KG
Sbjct: 78 YPAFTRFNVFLRDRFQCQYCGSPHELTFDHVIPRSRGGLTTWENVVAACSPCNLKKGGLM 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
+ A M + P P +D+
Sbjct: 138 PKAARMFPHQTPFQPSVHDL 157
>gi|330993972|ref|ZP_08317902.1| endonuclease [Gluconacetobacter sp. SXCC-1]
gi|329758918|gb|EGG75432.1| endonuclease [Gluconacetobacter sp. SXCC-1]
Length = 186
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 79/138 (57%), Gaps = 7/138 (5%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ ++E+ VL YD ++SP+ S +P+V+ ++ + +
Sbjct: 20 LSYFPLSLWSWQDAVRAVWLERVSVLSEYDTIVHSPSHSLRLPSVIALKDYIPAAR---- 75
Query: 165 KNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
K +R N+ RDNF+CQYC++R + LT DHV+P S+GG WEN+V AC CN KG
Sbjct: 76 KPAFTRFNVFLRDNFSCQYCNTRFPTQELTFDHVIPRSKGGRTSWENVVTACSPCNLIKG 135
Query: 222 KKTLEEANMQLSRVPKAP 239
E M R P P
Sbjct: 136 SYMPHEIRMYPDRTPMRP 153
>gi|13473003|ref|NP_104570.1| hypothetical protein mll3477 [Mesorhizobium loti MAFF303099]
gi|14023751|dbj|BAB50356.1| mll3477 [Mesorhizobium loti MAFF303099]
Length = 185
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 80/140 (57%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ Y+ ++SP S +P+V+ ++ VK R
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIVAEYEHAVSSPTFSMKLPSVVSLK---AYVKPSR- 77
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC + ++LT DHV+P RGG WEN+VAAC CN RKG
Sbjct: 78 HPAFTRFNVFLRDRFQCQYCGTPDDLTFDHVIPRHRGGATTWENVVAACSPCNLRKGGMM 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
A M + P P +D+
Sbjct: 138 PAHAKMWPLQKPYQPTVHDL 157
>gi|75910657|ref|YP_324953.1| HNH endonuclease [Anabaena variabilis ATCC 29413]
gi|75704382|gb|ABA24058.1| HNH endonuclease [Anabaena variabilis ATCC 29413]
Length = 181
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 85/142 (59%), Gaps = 5/142 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT---INSPNGSFYIPAVLRVRHLLQ 157
+V +Y P+ V KRAI L KA+ L Y + ++SP+ +P +R++ +
Sbjct: 13 VVFSQNYLPLCRVNIKRAIVLLLTNKAEPLVGYTENGWRVHSPSLIIDVPKHIRLK--IT 70
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
++R ++R+ ++ RD+ +CQYC SR+ LT+DHV+P SRGG W+N+V AC +CN
Sbjct: 71 SIERTWKVPPVNRREILRRDHHSCQYCGSRKRLTLDHVIPRSRGGSHTWDNVVTACERCN 130
Query: 218 SRKGKKTLEEANMQLSRVPKAP 239
SRKG +T E MQL PK P
Sbjct: 131 SRKGDRTPAEVGMQLRTKPKPP 152
>gi|118591416|ref|ZP_01548814.1| hypothetical protein SIAM614_27253 [Stappia aggregata IAM 12614]
gi|118436088|gb|EAV42731.1| hypothetical protein SIAM614_27253 [Stappia aggregata IAM 12614]
Length = 185
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ I F+++ +++ YD + SP+ F +P+V+ ++ VK R
Sbjct: 22 LSYYPLSLWSWQDTIKAVFLDRVNIVAEYDAAVRSPSFEFRLPSVVSLK---TFVKPSRY 78
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC S++ LT DH+VP S+GG W+N++ AC CN RK K+
Sbjct: 79 PA-FTRFNVFLRDKFQCQYCGSKDELTFDHLVPRSKGGLTTWDNVITACSPCNLRKSNKS 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
++ NM +P P D+
Sbjct: 138 CQQLNMWPMHMPFQPTIQDL 157
>gi|189345711|ref|YP_001942240.1| HNH endonuclease [Chlorobium limicola DSM 245]
gi|189339858|gb|ACD89261.1| HNH endonuclease [Chlorobium limicola DSM 245]
Length = 170
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 96/173 (55%), Gaps = 16/173 (9%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKA-DVLEYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ SY P+ + ++A+ L F KA V + ++ I + + F +P+++R+ ++V
Sbjct: 9 LVLNSSYEPLRICDAQKAVLLLFGGKAVPVAHHPEKAICTVSCCFPLPSIIRLNVFVRVP 68
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRE-NLTIDHVVPASRGGEWKWENLVAACFKCNS 218
++ + L++KN++ RD F CQYC + LT+DH++P SRGGE WENL+ AC +CN+
Sbjct: 69 FKKIM---LNKKNILRRDAFRCQYCGRTDLPLTVDHILPRSRGGEESWENLITACLRCNT 125
Query: 219 RKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
+KG +T EA M P P I M ++ EW+ YL
Sbjct: 126 KKGNRTPSEAGMATRSKPARPNHI-----------IFMQQLTASVSDEWKPYL 167
>gi|444312983|ref|ZP_21148548.1| HNH endonuclease [Ochrobactrum intermedium M86]
gi|443483689|gb|ELT46526.1| HNH endonuclease [Ochrobactrum intermedium M86]
Length = 190
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 79/140 (56%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+E+ +++ YD ++SP+ S +P+V+ ++ VK R
Sbjct: 27 LSYYPLSLWSWQDAIKAVFLERVNIVAEYDHIVSSPSFSMRVPSVICLK---DYVKPPRY 83
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC S +LT DHV P GGE WEN+VAAC CN RKG
Sbjct: 84 PA-FTRFNVFLRDRFECQYCGSPHDLTFDHVTPRCHGGETTWENVVAACSPCNLRKGGMM 142
Query: 225 LEEANMQLSRVPKAPKDYDI 244
A+M + P P D+
Sbjct: 143 PAVAHMWPRQKPVMPTVQDL 162
>gi|163854230|ref|YP_001642273.1| HNH endonuclease [Methylobacterium extorquens PA1]
gi|218533175|ref|YP_002423991.1| HNH endonuclease [Methylobacterium extorquens CM4]
gi|240141690|ref|YP_002966170.1| endonuclease [Methylobacterium extorquens AM1]
gi|254564198|ref|YP_003071293.1| endonuclease [Methylobacterium extorquens DM4]
gi|418060763|ref|ZP_12698660.1| HNH endonuclease [Methylobacterium extorquens DSM 13060]
gi|163665835|gb|ABY33202.1| HNH endonuclease [Methylobacterium extorquens PA1]
gi|218525478|gb|ACK86063.1| HNH endonuclease [Methylobacterium extorquens CM4]
gi|240011667|gb|ACS42893.1| putative endonuclease [Methylobacterium extorquens AM1]
gi|254271476|emb|CAX27491.1| putative endonuclease [Methylobacterium extorquens DM4]
gi|373565704|gb|EHP91736.1| HNH endonuclease [Methylobacterium extorquens DSM 13060]
Length = 182
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 80/143 (55%), Gaps = 7/143 (4%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ WK A F+++ ++ YD +SP+ S +P+V+ ++ + + +
Sbjct: 16 LSYNPLSLWSWKDAFTALFLDRVTLVANYDVEAHSPSRSLKVPSVVALKSYVALAR---- 71
Query: 165 KNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
+R N+ RD F+CQYC R LT DHVVP SRGG WEN+VAAC CN RK
Sbjct: 72 SPAFTRYNIYLRDTFSCQYCGLRLPSGGLTFDHVVPRSRGGLSTWENVVAACSPCNLRKA 131
Query: 222 KKTLEEANMQLSRVPKAPKDYDI 244
+T EA M L P P +++
Sbjct: 132 NRTPHEAEMPLLNEPHRPTRHEL 154
>gi|148260330|ref|YP_001234457.1| HNH endonuclease [Acidiphilium cryptum JF-5]
gi|326403520|ref|YP_004283602.1| putative HNH endonuclease [Acidiphilium multivorum AIU301]
gi|338983746|ref|ZP_08632907.1| HNH endonuclease [Acidiphilium sp. PM]
gi|146402011|gb|ABQ30538.1| HNH endonuclease [Acidiphilium cryptum JF-5]
gi|325050382|dbj|BAJ80720.1| putative HNH endonuclease [Acidiphilium multivorum AIU301]
gi|338207328|gb|EGO95304.1| HNH endonuclease [Acidiphilium sp. PM]
Length = 186
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 98 FRGLVLD-----ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRV 152
F LVL+ +SY P+++ W+ A+ F+++ VL Y+ ++S + + +P+V+ +
Sbjct: 8 FPALVLNADFRPLSYFPLSLWSWQDAVKAVFLDRVSVLSEYEHEVHSVSSAMRLPSVIAL 67
Query: 153 RHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENL 209
+ + ++ + +R N+ RD FTCQYC SR LT DHV+P +RGG WEN+
Sbjct: 68 KDFVPGLR----QPAFTRFNVFLRDGFTCQYCHSRLPAPELTFDHVIPRARGGRTTWENV 123
Query: 210 VAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDI 244
V AC CN RKG K E +M P+ P +++
Sbjct: 124 VTACGACNLRKGSKLPRECHMFPYETPRRPNSWEL 158
>gi|433603168|ref|YP_007035537.1| HNH endonuclease [Saccharothrix espanaensis DSM 44229]
gi|407881021|emb|CCH28664.1| HNH endonuclease [Saccharothrix espanaensis DSM 44229]
Length = 221
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 81/142 (57%), Gaps = 5/142 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLLQV 158
L+L+ ++ P+ + +RA+ L KA+V+ + ++S +P+V+R+ ++V
Sbjct: 57 LLLNATFEPLTALPLRRAVVLVVCGKAEVVHGDPAGAVVHSSTAEVVVPSVIRLSSYVRV 116
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
R R+ L+R LM+RD + C YC R TIDHVVP SRGG W+N VA C +CN
Sbjct: 117 PYRGRVP--LTRAGLMHRDRYRCAYCGGRAE-TIDHVVPRSRGGPHSWQNCVACCARCNH 173
Query: 219 RKGKKTLEEANMQLSRVPKAPK 240
RK K L E +L VP AP+
Sbjct: 174 RKADKLLSELGWRLRVVPNAPR 195
>gi|320108568|ref|YP_004184158.1| HNH endonuclease [Terriglobus saanensis SP1PR4]
gi|319927089|gb|ADV84164.1| HNH endonuclease [Terriglobus saanensis SP1PR4]
Length = 236
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 94/178 (52%), Gaps = 22/178 (12%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ +RA+ L A E T+++ +P+V+R+ ++
Sbjct: 67 LVLNASYEPINICGARRALVLVLKGVARTEEEQGATMHAARVRMPMPSVIRL------LE 120
Query: 161 RRRIKNN---LSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACF 214
RRI + LSRKN++ RD TCQYC+ LT+DHV+P SRGG WENLVA C
Sbjct: 121 YRRIPHQTRALSRKNILLRDRSTCQYCAVIFPSGELTLDHVIPRSRGGTSTWENLVACCH 180
Query: 215 KCNSRKGKKTLEEA-NMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
CN RKG + L E +M+L R P ++ + +RML WR+YL
Sbjct: 181 NCNRRKGSQLLHELRDMKLLRQPSP------FSLHTSRHIMRML---GSGEANWRKYL 229
>gi|284040496|ref|YP_003390426.1| HNH endonuclease [Spirosoma linguale DSM 74]
gi|283819789|gb|ADB41627.1| HNH endonuclease [Spirosoma linguale DSM 74]
Length = 171
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQ-TINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ Y ++ +A L +++KA+++ +Q + + + + +P+V+R+ + +
Sbjct: 6 LVLNQDYSAFSICSVPKAFLLVYLDKAELVAESEQFMLRTVSAEYPMPSVIRLHRYVSLP 65
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N+ RD CQYC + E+LT+DHV+P SRGG+ W+NL AC +CNSR
Sbjct: 66 YKGVM---LTRQNIFKRDGHHCQYCGTTEDLTLDHVLPKSRGGKTSWDNLATACKRCNSR 122
Query: 220 KGKKTLEEANMQLSRVPKAP 239
KG T EEAN++L + P P
Sbjct: 123 KGDYTPEEANLKLRQKPFKP 142
>gi|329890572|ref|ZP_08268915.1| HNH endonuclease family protein [Brevundimonas diminuta ATCC 11568]
gi|328845873|gb|EGF95437.1| HNH endonuclease family protein [Brevundimonas diminuta ATCC 11568]
Length = 189
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 86/155 (55%), Gaps = 12/155 (7%)
Query: 98 FRGLVLD-----ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRV 152
F LVL+ +SY P+++ W+ + + ++ DV+ YD+ + SP+ +P+V+ +
Sbjct: 11 FPALVLNADFRPLSYFPLSLWPWEEVVKAVWQDRVDVVATYDKVVRSPSLEMQLPSVVCL 70
Query: 153 RHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENL 209
+ + + K +R N+ RD F CQYC S ++LT DHV+P SRGG W+N+
Sbjct: 71 KSYVDQDR----KPAFTRFNVFLRDGFACQYCGEPGSSQDLTFDHVIPRSRGGRTTWQNI 126
Query: 210 VAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDI 244
VAAC CN RKG +T +A M L R P + +
Sbjct: 127 VAACGPCNLRKGGRTPGQAQMPLRRTAHQPSAWQL 161
>gi|111221289|ref|YP_712083.1| HNH endonuclease [Frankia alni ACN14a]
gi|392944173|ref|ZP_10309815.1| restriction endonuclease [Frankia sp. QA3]
gi|111148821|emb|CAJ60499.1| conserved hypothetical protein; HNH endonuclease family protein
[Frankia alni ACN14a]
gi|392287467|gb|EIV93491.1| restriction endonuclease [Frankia sp. QA3]
Length = 171
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 95/172 (55%), Gaps = 14/172 (8%)
Query: 100 GLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ +Y P+ VV +RA+ L +KA ++E Q + S S +P V+R+ ++V
Sbjct: 4 ALVLNATYEPLCVVSQRRALVLVLTDKAVMVESAGQVLRSSTTSVDVPIVVRLARFVRVP 63
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R ++ L+RK ++ RD+ C YC++ ++DHV+P SRGG WEN+VAAC +CN
Sbjct: 64 YRSQVP--LTRKGVLARDHHRCVYCNAPAT-SLDHVIPRSRGGAHVWENVVAACGRCNHV 120
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
K + + + +L P+AP + AA R+L R+ P W YL
Sbjct: 121 KADRAVADLGWRLRTAPRAP----------SGAAWRILGSRRMDP-RWSAYL 161
>gi|398831072|ref|ZP_10589251.1| restriction endonuclease [Phyllobacterium sp. YR531]
gi|398212640|gb|EJM99242.1| restriction endonuclease [Phyllobacterium sp. YR531]
Length = 185
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 82/140 (58%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ Y+ ++SP+ + +P+V+ ++ ++ +
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIVAEYEHEVSSPSFAMRLPSVVSLKSYIKPSR---- 77
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC S E+LT DHV+P GGE WEN+VAAC CN RKG
Sbjct: 78 NPAFTRFNVFLRDRFECQYCGSEEDLTFDHVIPRCAGGETVWENVVAACSPCNLRKGGLM 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
+ A M + P P +D+
Sbjct: 138 PDRAKMWPRQKPYPPTVHDL 157
>gi|357031014|ref|ZP_09092958.1| 5-methylcytosine-specific restriction protein [Gluconobacter
morbifer G707]
gi|356415708|gb|EHH69351.1| 5-methylcytosine-specific restriction protein [Gluconobacter
morbifer G707]
Length = 215
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 82/151 (54%), Gaps = 13/151 (8%)
Query: 98 FRGLVLD-----ISYRPVNVVCWKRAICLEFMEKADVL-EYYDQTINSPNGSFYIPAVLR 151
F LVL+ +SY P+++ W+ A+ F+++ VL EY D + SP+ S +P+V+
Sbjct: 36 FPALVLNADFRPLSYFPLSLWSWQEAVKAVFLDRVSVLSEYEDAVVRSPSQSIRLPSVIA 95
Query: 152 VRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWEN 208
++ + + K +R N+ RDNF+CQYC R LT DHV+P +RGG WEN
Sbjct: 96 LKDYIPAAR----KPAFTRFNVFLRDNFSCQYCHDRLPTHELTFDHVIPRARGGRTTWEN 151
Query: 209 LVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
+V AC CN KG + E M + P P
Sbjct: 152 VVTACSPCNLLKGSRLPSEIGMHPHKKPAQP 182
>gi|193212358|ref|YP_001998311.1| HNH endonuclease [Chlorobaculum parvum NCIB 8327]
gi|193085835|gb|ACF11111.1| HNH endonuclease [Chlorobaculum parvum NCIB 8327]
Length = 170
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 89/147 (60%), Gaps = 5/147 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYY-DQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ SY P+++ + A+ L F KA V+ + + I + + SF +P+++R+ ++V
Sbjct: 9 LVLNASYEPLSICDARNAVLLLFGGKAMVVASHPEHRIRTVSESFPLPSIVRLTVYVRVE 68
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRE-NLTIDHVVPASRGGEWKWENLVAACFKCNS 218
R + LSRKN+ RD + CQYC + LT+DHV+P SRGGE +W+NL+ AC CN+
Sbjct: 69 YRHAV---LSRKNIFRRDGYRCQYCGRNDLQLTLDHVIPKSRGGEDRWDNLITACKPCNT 125
Query: 219 RKGKKTLEEANMQLSRVPKAPKDYDIL 245
KG +T EA M + + P P ++
Sbjct: 126 LKGNRTPTEAGMTMLQKPFRPSHIALM 152
>gi|340776977|ref|ZP_08696920.1| HNH endonuclease [Acetobacter aceti NBRC 14818]
Length = 186
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 81/143 (56%), Gaps = 7/143 (4%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ I +++ VL YD+ ++SP+ S +P+V+ ++ + +R
Sbjct: 20 LSYFPLSLWSWQDTIKAVCLDRVSVLSEYDEEVHSPSCSMRLPSVIALKEYVPTARR--- 76
Query: 165 KNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
+R NL RDNF+CQYC+ + +LT DHV+P SRGG WEN+V AC CN KG
Sbjct: 77 -PAFTRFNLFLRDNFSCQYCNDQLPTHDLTFDHVIPRSRGGRTTWENIVTACSTCNLLKG 135
Query: 222 KKTLEEANMQLSRVPKAPKDYDI 244
+ E M R P P +++
Sbjct: 136 SRMPHEIRMFPRRQPVQPSSWEL 158
>gi|428310306|ref|YP_007121283.1| restriction endonuclease [Microcoleus sp. PCC 7113]
gi|428251918|gb|AFZ17877.1| restriction endonuclease [Microcoleus sp. PCC 7113]
Length = 179
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 85/147 (57%), Gaps = 12/147 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYY------DQTINSPNGSFYIPAVLRVRH 154
+V +Y PV+ V KRAI L KA+ L++ ++SP+ +P +R
Sbjct: 13 VVFSKNYLPVSRVNIKRAIALLVTGKAEPLDFTMGKGGKGIAVHSPSVVLLVPEHIR--- 69
Query: 155 LLQVVKRRRI--KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAA 212
L + R R+ ++R+ ++ RD TCQYC S + LT+DHV+P S+GG+ W+N+V A
Sbjct: 70 -LTITDRERVWKVPPVNRREVLRRDKHTCQYCGSTKKLTLDHVIPRSKGGKHTWDNVVIA 128
Query: 213 CFKCNSRKGKKTLEEANMQLSRVPKAP 239
C +CNSRKG +T +A M L PKAP
Sbjct: 129 CERCNSRKGDRTPLQAGMTLRTQPKAP 155
>gi|285808241|gb|ADC35775.1| putative restriction endonuclease [uncultured bacterium 293]
Length = 177
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 95/175 (54%), Gaps = 15/175 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRV-RHLLQVV 159
LVL+ +Y P+ +V W++A+ L F K +V+ Y++ I +P+VLR+ RH+ +
Sbjct: 5 LVLNATYEPLRIVPWQKAMTLLFQGKVEVIANYEREIRGVTVRLKLPSVLRLLRHVR--M 62
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKC 216
KR SR N+ RD+ CQYC+ R LT DHVVP +RGG+ W+N+V C C
Sbjct: 63 KRAFADVPFSRANVYARDDHRCQYCTRRLPPAQLTFDHVVPVARGGQKGWDNIVTCCIPC 122
Query: 217 NSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
N RKG +T EE +L R P+ P L++ L++ P WR YL
Sbjct: 123 NRRKGDRTPEEVGFRLLRRPRRPPALPSLSLGLSA---------NRAPDSWRDYL 168
>gi|260904277|ref|ZP_05912599.1| HNH endonuclease [Brevibacterium linens BL2]
Length = 166
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 86/143 (60%), Gaps = 3/143 (2%)
Query: 98 FRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQ 157
+ LVL+ Y P+++V + RA+ L KA VL D + S + + P+V+ + ++
Sbjct: 1 MKTLVLNAGYEPLSIVPFTRAVVLVLTGKATVLAAEDVPVRSEHLNLDQPSVILLTRYVR 60
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
RR+ +LSR+ ++ RDN C YC+ + T+DHVVP SRGG WENLVA C +CN
Sbjct: 61 PPHDRRV--SLSRRGVLRRDNHRCAYCA-KPATTVDHVVPRSRGGVNSWENLVACCRECN 117
Query: 218 SRKGKKTLEEANMQLSRVPKAPK 240
+RKG ++L E +LS P+ P+
Sbjct: 118 NRKGNRSLAEIGWKLSFHPQEPR 140
>gi|420965948|ref|ZP_15429160.1| hypothetical protein MM3A0810R_1697 [Mycobacterium abscessus
3A-0810-R]
gi|420982137|ref|ZP_15445307.1| hypothetical protein MA6G0728R_1606 [Mycobacterium abscessus
6G-0728-R]
gi|421012126|ref|ZP_15475217.1| hypothetical protein MA3A0122R_1701 [Mycobacterium abscessus
3A-0122-R]
gi|421028202|ref|ZP_15491237.1| hypothetical protein MA3A0930R_1738 [Mycobacterium abscessus
3A-0930-R]
gi|392174155|gb|EIU99821.1| hypothetical protein MA6G0728R_1606 [Mycobacterium abscessus
6G-0728-R]
gi|392208278|gb|EIV33853.1| hypothetical protein MA3A0122R_1701 [Mycobacterium abscessus
3A-0122-R]
gi|392230767|gb|EIV56276.1| hypothetical protein MA3A0930R_1738 [Mycobacterium abscessus
3A-0930-R]
gi|392257436|gb|EIV82889.1| hypothetical protein MM3A0810R_1697 [Mycobacterium abscessus
3A-0810-R]
Length = 164
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 79/141 (56%), Gaps = 5/141 (3%)
Query: 102 VLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
+L+ +Y P+ + +RA+ + KADV+ + I+S S +P+V+R+R ++V
Sbjct: 1 MLNSTYEPLTALPMRRAVIMLLCGKADVVHDDPAAPIIHSATTSVAVPSVIRLRTFVRVP 60
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R R+ ++R LM+RD F C YC R + TIDHV+P S+GG WEN VA C CN R
Sbjct: 61 YRARVP--MTRAALMHRDRFRCAYCGGRAD-TIDHVIPRSKGGAHSWENCVACCSSCNHR 117
Query: 220 KGKKTLEEANMQLSRVPKAPK 240
K + L E L P PK
Sbjct: 118 KADRLLAELGWSLHTTPMPPK 138
>gi|256375279|ref|YP_003098939.1| HNH endonuclease [Actinosynnema mirum DSM 43827]
gi|255919582|gb|ACU35093.1| HNH endonuclease [Actinosynnema mirum DSM 43827]
Length = 220
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 82/142 (57%), Gaps = 5/142 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEY-YDQTI-NSPNGSFYIPAVLRVRHLLQV 158
L+L+ ++ P+ + +RA+ L KA+V+ D T+ +S +P+V+R+ + ++V
Sbjct: 56 LLLNTTFEPLTALPLRRAVVLVVCGKAEVVHGDPDGTVLHSSTAEVLVPSVIRLSNHVRV 115
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
R R+ L+R LM+RD + C YC R TIDHVVP SRGG W N VA C KCN
Sbjct: 116 PYRGRVP--LTRAGLMHRDRYRCAYCGGRAE-TIDHVVPRSRGGPHTWTNCVACCAKCNH 172
Query: 219 RKGKKTLEEANMQLSRVPKAPK 240
RK K L E +L VP AP+
Sbjct: 173 RKADKLLSELGWRLRVVPAAPR 194
>gi|392398430|ref|YP_006435031.1| restriction endonuclease [Flexibacter litoralis DSM 6794]
gi|390529508|gb|AFM05238.1| restriction endonuclease [Flexibacter litoralis DSM 6794]
Length = 167
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 84/140 (60%), Gaps = 4/140 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYY-DQTINSPNGSFYIPAVLRVRHLLQVV 159
L+L+ YR ++V +A L ++ KA+++ D I + N SF P+V+R+ + +
Sbjct: 7 LILNADYRAISVCSVAKAFLLVYLHKAEMVNSVPDGFIQTVNKSFAAPSVIRLNSYVNIP 66
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R + L+R+N+ RD C YC S +NLT+DHV+P S+GG+ W NLV+AC +CNS+
Sbjct: 67 YRGVM---LTRQNIFKRDGNQCVYCKSTQNLTLDHVIPRSQGGKTSWTNLVSACQRCNSK 123
Query: 220 KGKKTLEEANMQLSRVPKAP 239
K +LE+ M+L P P
Sbjct: 124 KSDFSLEDVGMKLPYEPFKP 143
>gi|254461934|ref|ZP_05075350.1| restriction endonuclease [Rhodobacterales bacterium HTCC2083]
gi|206678523|gb|EDZ43010.1| restriction endonuclease [Rhodobacteraceae bacterium HTCC2083]
Length = 205
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 91/170 (53%), Gaps = 14/170 (8%)
Query: 84 EEYDSDEEFDELACFRGLVLD-----ISYRPVNVVCWKRAICLEFMEKADVLEYY-DQTI 137
E + +L R LVL+ +S+ P++ W+ A+ ++ L+ Y D I
Sbjct: 11 EVLSTHSHMHQLNTHRTLVLNADMQPLSWMPLSTWSWQEAMTAVLQDRVIQLKTYEDLEI 70
Query: 138 NSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRE---NLTIDH 194
+S +F +PAV+ +R +R +R NL RD F CQYC +++ +LT DH
Sbjct: 71 HSATQTFEVPAVVCLRQY-----HKRQNAAFTRYNLFLRDGFRCQYCGAKKPAKDLTFDH 125
Query: 195 VVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDI 244
V+P SR G +EN+VAAC CN RK +T EA M+L R P+AP +D+
Sbjct: 126 VLPRSRKGPATFENIVAACQSCNLRKSNRTPREAGMKLLRKPRAPSPHDL 175
>gi|189499161|ref|YP_001958631.1| HNH endonuclease [Chlorobium phaeobacteroides BS1]
gi|189494602|gb|ACE03150.1| HNH endonuclease [Chlorobium phaeobacteroides BS1]
Length = 172
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 89/147 (60%), Gaps = 5/147 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKA-DVLEYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ SY P+ + ++AI L F KA V + ++ + + + SF +P+++R+ ++V
Sbjct: 9 LVLNSSYEPLTICDAQKAIILLFCGKAVSVAHHPERFVCTVSESFPLPSIVRLNVFVRVP 68
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYC-SSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
+ + L+RKN+ RDNF CQYC + LTIDH+ P S+GGE WENLV AC CN+
Sbjct: 69 YKHIM---LTRKNIFRRDNFQCQYCGTCGTPLTIDHMTPRSQGGEDSWENLVTACGPCNT 125
Query: 219 RKGKKTLEEANMQLSRVPKAPKDYDIL 245
+KG +T +EA M + P P ++
Sbjct: 126 KKGNRTPQEARMIPQKKPIRPSHIMLM 152
>gi|296139117|ref|YP_003646360.1| HNH endonuclease [Tsukamurella paurometabola DSM 20162]
gi|296027251|gb|ADG78021.1| HNH endonuclease [Tsukamurella paurometabola DSM 20162]
Length = 196
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 83/144 (57%), Gaps = 5/144 (3%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLL 156
R L+L+ +Y P+ V +RAI L ++ADV+ + ++S + S +P+V+R+R +
Sbjct: 30 RVLLLNATYEPLTAVSMRRAIVLMLRDRADVVHDDPNGPLVHSADRSLSVPSVIRLRTYV 89
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R ++ ++R LM+RD F C YC + + TIDHV P SRGG WEN VA C C
Sbjct: 90 RVPYRAQVP--MTRAALMHRDRFRCGYCGGKAD-TIDHVQPRSRGGGHSWENCVACCASC 146
Query: 217 NSRKGKKTLEEANMQLSRVPKAPK 240
N RK + L E L P+ P+
Sbjct: 147 NHRKADRLLSELGWTLRTEPRPPQ 170
>gi|291302091|ref|YP_003513369.1| HNH endonuclease [Stackebrandtia nassauensis DSM 44728]
gi|290571311|gb|ADD44276.1| HNH endonuclease [Stackebrandtia nassauensis DSM 44728]
Length = 177
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 83/142 (58%), Gaps = 3/142 (2%)
Query: 100 GLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ +Y P+ VV +RA L EKA+ + D ++S + +P+V+R+ ++V
Sbjct: 17 ALVLNATYEPLCVVSVRRAAVLLLSEKAETVTPGDGFLHSERVTIQVPSVVRLNRYVRVT 76
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+RR + +L+R+ + RD + C YC TIDHV+P SRGG WEN+VA+C +CN +
Sbjct: 77 RRRGV--SLTRRAVFARDGWKCAYCGGPAE-TIDHVMPRSRGGRHIWENVVASCARCNHK 133
Query: 220 KGKKTLEEANMQLSRVPKAPKD 241
K +T E L+ P PK+
Sbjct: 134 KSDRTPGEMGWSLAPAPSVPKN 155
>gi|383776269|ref|YP_005460835.1| putative endonuclease [Actinoplanes missouriensis 431]
gi|381369501|dbj|BAL86319.1| putative endonuclease [Actinoplanes missouriensis 431]
Length = 183
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 88/172 (51%), Gaps = 14/172 (8%)
Query: 100 GLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ +Y P+ VV +RA L KA+ + D ++S + + +P+V+R+ ++V
Sbjct: 12 ALVLNATYEPLCVVSVRRATILLLTAKAECVSDGDGMLHSAHQTLPVPSVVRLTRYVKVP 71
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R + LSR+ + RD C YC TIDHV P SRGG WEN+VAAC KCN
Sbjct: 72 YRTHV--GLSRRAIFARDGGRCAYCRGSAE-TIDHVFPRSRGGLHAWENVVAACAKCNHS 128
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG KT E +L P AP+ A R+L R P WR +L
Sbjct: 129 KGDKTPAELGWRLHSPPAAPR----------GVAWRVLGHRTPDP-RWRDWL 169
>gi|145596047|ref|YP_001160344.1| HNH endonuclease [Salinispora tropica CNB-440]
gi|145305384|gb|ABP55966.1| HNH endonuclease [Salinispora tropica CNB-440]
Length = 177
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 78/141 (55%), Gaps = 3/141 (2%)
Query: 100 GLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ +Y P+ VV +RA L KA + D ++S S +P+V+R+ ++V
Sbjct: 12 ALVLNATYEPLCVVSVRRAAILVLTAKAVCVADGDGVLHSARDSLPVPSVVRLTRFVRVP 71
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R + LSR+ + RD + C YC TIDHV+P SRGG WEN+VAAC +CN
Sbjct: 72 FRAHV--GLSRRAIFARDGWRCAYCRGPAE-TIDHVLPRSRGGRHSWENVVAACARCNHT 128
Query: 220 KGKKTLEEANMQLSRVPKAPK 240
KG KT E +L P APK
Sbjct: 129 KGDKTPAELGWRLPAPPTAPK 149
>gi|86607408|ref|YP_476171.1| HNH endonuclease domain-containing protein [Synechococcus sp.
JA-3-3Ab]
gi|86555950|gb|ABD00908.1| HNH endonuclease domain protein [Synechococcus sp. JA-3-3Ab]
Length = 180
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 83/142 (58%), Gaps = 5/142 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTI---NSPNGSFYIPAVLRVRHLLQ 157
+V +Y P++ V +RAI L KA+ L + + SP+ +P +R+ ++
Sbjct: 13 VVFSQNYLPISRVNIRRAIVLLLTGKAEPLAMMNVPVWKVRSPSQVIEVPEHIRL--TIK 70
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
+R ++R+ ++ RD+ TCQYC S NLT+DHVVP SRGG W+N+V AC +CN
Sbjct: 71 GKERAWRVPPVNRREVLRRDHHTCQYCGSTHNLTLDHVVPLSRGGSHTWDNVVTACERCN 130
Query: 218 SRKGKKTLEEANMQLSRVPKAP 239
RKG +T EEA M L P+AP
Sbjct: 131 QRKGNRTPEEAGMVLRSKPRAP 152
>gi|395491647|ref|ZP_10423226.1| HNH endonuclease family protein [Sphingomonas sp. PAMC 26617]
gi|404255007|ref|ZP_10958975.1| HNH endonuclease family protein [Sphingomonas sp. PAMC 26621]
Length = 188
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 75/128 (58%), Gaps = 4/128 (3%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P++V W+ AI F+++ D++ Y++ + SP +P+V+ ++ + R
Sbjct: 25 LSYYPLSVWPWQTAIKAVFLDRVDIVAEYEREVRSPTQRIKLPSVIALKQYV----RPSA 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD FTCQYC + LT DH+VP ++GG WEN+ AC CN +KG +T
Sbjct: 81 FPAFTRFNLFLRDKFTCQYCGAGHELTFDHIVPRAQGGRTTWENVATACSPCNLKKGGRT 140
Query: 225 LEEANMQL 232
++A M L
Sbjct: 141 PKQAGMPL 148
>gi|357392378|ref|YP_004907219.1| hypothetical protein KSE_54880 [Kitasatospora setae KM-6054]
gi|311898855|dbj|BAJ31263.1| hypothetical protein KSE_54880 [Kitasatospora setae KM-6054]
Length = 205
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 82/139 (58%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE T++S G+ P+V+++ ++V
Sbjct: 5 LVLNASYEPLGVVSMRRALILVLNHKAIALEDAGTTLHSATGAVRAPSVVKLTRFVRVPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD+ C YC + ++DHV+P SRGG+ +W+N+VAAC +CN K
Sbjct: 65 RGPVP--LTRRALFARDHGRCVYCGAAAT-SVDHVIPRSRGGQHRWDNVVAACRRCNHTK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ L + ++ R P AP
Sbjct: 122 ADRHLADLGWRMKRPPAAP 140
>gi|159039439|ref|YP_001538692.1| HNH endonuclease [Salinispora arenicola CNS-205]
gi|157918274|gb|ABV99701.1| HNH endonuclease [Salinispora arenicola CNS-205]
Length = 177
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 78/141 (55%), Gaps = 3/141 (2%)
Query: 100 GLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ +Y P+ VV +RA L KA + D+ + S S +P+V+R+ ++V
Sbjct: 12 ALVLNATYEPLCVVSVRRAAILVLTAKAVCVADGDEVLRSARNSLPVPSVVRLTRFVRVP 71
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R + LSR+ + RD + C YC TIDHV+P SRGG WEN+VAAC +CN
Sbjct: 72 FRAHV--GLSRRAIFARDGWRCAYCRGPAE-TIDHVLPRSRGGRHSWENVVAACARCNHT 128
Query: 220 KGKKTLEEANMQLSRVPKAPK 240
KG KT E +L P APK
Sbjct: 129 KGDKTPAELGWRLPAPPVAPK 149
>gi|386846269|ref|YP_006264282.1| HNH endonuclease [Actinoplanes sp. SE50/110]
gi|359833773|gb|AEV82214.1| HNH endonuclease [Actinoplanes sp. SE50/110]
Length = 185
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 80/141 (56%), Gaps = 3/141 (2%)
Query: 100 GLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ +Y P+ VV +RA L +KA+ + D ++S + +P+V+R+ ++V
Sbjct: 12 ALVLNATYEPLCVVSVRRATILVLTDKAECVSDGDGILHSAHEQLPVPSVVRLTRYVKVP 71
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R + LSR+ + RD C YC TIDHV P SRGG W+N+VAAC KCN
Sbjct: 72 YRTHV--GLSRRAIFARDGGRCAYCRGSAE-TIDHVFPRSRGGLHAWDNVVAACAKCNHS 128
Query: 220 KGKKTLEEANMQLSRVPKAPK 240
KG KT E +L +P+AP+
Sbjct: 129 KGDKTPAELGWRLHAIPQAPR 149
>gi|331695690|ref|YP_004331929.1| HNH endonuclease [Pseudonocardia dioxanivorans CB1190]
gi|326950379|gb|AEA24076.1| HNH endonuclease [Pseudonocardia dioxanivorans CB1190]
Length = 196
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 83/144 (57%), Gaps = 6/144 (4%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYY--DQTINSPNGSFYIPAVLRVRHLL 156
R L+L+ S+ P+ VV KRAI L KA+ +E +S N + P+V+R+ +
Sbjct: 33 RVLLLNASFEPLAVVTAKRAIVLMLSGKAECVEAAIGGGAFHSENLTVPAPSVMRLSRYV 92
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V RR + ++R ++ RD C YC R + TIDHVVP SRGG+ WEN VAAC C
Sbjct: 93 RVPYRRAVP--MTRAGVLRRDGRRCAYCGVRAD-TIDHVVPRSRGGDHSWENCVAACRGC 149
Query: 217 NSRKGKKTLEEANMQLSRVPKAPK 240
NSRK + LEE L+ VP AP
Sbjct: 150 NSRKADRLLEELGWTLA-VPPAPP 172
>gi|427730057|ref|YP_007076294.1| restriction endonuclease [Nostoc sp. PCC 7524]
gi|427365976|gb|AFY48697.1| restriction endonuclease [Nostoc sp. PCC 7524]
Length = 181
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 85/142 (59%), Gaps = 5/142 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVL---EYYDQTINSPNGSFYIPAVLRVRHLLQ 157
+V +Y P+ V KRAI L KA+ L ++SP+ +P +R++ +
Sbjct: 13 VVFSQNYLPLCRVNIKRAIVLLITNKAEPLLGSTADGWRVHSPSLIINVPKHIRLK--IA 70
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
++R ++R+ ++ RD+ +CQYC SR+ LT+DHV+P SRGG W+N+VAAC +CN
Sbjct: 71 SIERTWKLPPVNRREILRRDHHSCQYCGSRKRLTLDHVLPRSRGGTHTWDNVVAACERCN 130
Query: 218 SRKGKKTLEEANMQLSRVPKAP 239
SRKG +T EA MQL PK P
Sbjct: 131 SRKGDRTPTEAGMQLRTKPKPP 152
>gi|436834452|ref|YP_007319668.1| HNH endonuclease [Fibrella aestuarina BUZ 2]
gi|384065865|emb|CCG99075.1| HNH endonuclease [Fibrella aestuarina BUZ 2]
Length = 172
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 84/140 (60%), Gaps = 4/140 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKAD-VLEYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ Y +++ +A L ++ KA+ V E + + + F +P V+R+ + +
Sbjct: 6 LVLNSDYSALSICSVPKAFLLVYLSKAELVAESEALFLRTVDKEFPMPTVIRLHRYVHLP 65
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + L+R+N+ RD CQYC + E+LT+DHV+P SRGG+ W+NL+ AC +CNSR
Sbjct: 66 YKGVM---LTRQNIFRRDGHQCQYCGTTEDLTLDHVIPKSRGGKTNWDNLLTACKRCNSR 122
Query: 220 KGKKTLEEANMQLSRVPKAP 239
KG T EEAN+++ P P
Sbjct: 123 KGDFTPEEANLKMRHKPFKP 142
>gi|429767712|ref|ZP_19299899.1| HNH endonuclease domain protein [Brevundimonas diminuta 470-4]
gi|429189871|gb|EKY30687.1| HNH endonuclease domain protein [Brevundimonas diminuta 470-4]
Length = 189
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 98 FRGLVLD-----ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRV 152
F LVL+ +SY P+++ W+ + + ++ DV+ YD+ + SP+ +P+V+ +
Sbjct: 11 FPALVLNADFRPLSYFPLSLWPWEEVVKAVWQDRVDVVATYDKVVRSPSLEMQLPSVVCL 70
Query: 153 RHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENL 209
+ + +R +R N+ RD F CQYC + ++LT DHV+P SRGG W+N+
Sbjct: 71 KSYVDQDRR----PAFTRFNVFLRDGFACQYCGEPGTSQDLTFDHVIPRSRGGRTTWQNI 126
Query: 210 VAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDI 244
VAAC CN +KG +T +A+M L R P + +
Sbjct: 127 VAACGPCNLKKGGRTPGQAHMPLRRTAHQPSAWQL 161
>gi|333918739|ref|YP_004492320.1| HNH endonuclease [Amycolicicoccus subflavus DQS3-9A1]
gi|333480960|gb|AEF39520.1| HNH endonuclease [Amycolicicoccus subflavus DQS3-9A1]
Length = 229
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 82/146 (56%), Gaps = 5/146 (3%)
Query: 96 ACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVR 153
A R L+L+ SY P+ V +RA+ L +A++L + ++S Y+P+V+R+
Sbjct: 59 AARRVLLLNASYEPLTTVPVRRALVLMLRNRAEMLHSDPAGTVVHSAGRQLYVPSVIRLT 118
Query: 154 HLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAAC 213
+ V R+ L+R LM RD F C YC ++ + TIDHVVP SRGGE WEN VA C
Sbjct: 119 VYVHVPYIARVP--LTRAALMQRDRFRCGYCGAKAD-TIDHVVPRSRGGEHVWENCVACC 175
Query: 214 FKCNSRKGKKTLEEANMQLSRVPKAP 239
+CN +K + L E L +P+ P
Sbjct: 176 ARCNHKKADRLLSELGWSLRTIPRPP 201
>gi|337285718|ref|YP_004625191.1| HNH endonuclease [Thermodesulfatator indicus DSM 15286]
gi|335358546|gb|AEH44227.1| HNH endonuclease [Thermodesulfatator indicus DSM 15286]
Length = 203
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 87/165 (52%), Gaps = 28/165 (16%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVL----------------EYY-----DQTINS 139
LVL+ SY+ V + +RAIC A V+ ++Y + I S
Sbjct: 13 LVLNRSYQAVQITTVQRAICHLVKGTAKVITPDWTTHTLEEWILASQFYANGNGHRFIRS 72
Query: 140 PNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR----ENLTIDHV 195
PN SF P + +L + R++ SR NLM RD +TCQYC ++ TIDH+
Sbjct: 73 PNLSFLAPDAI---YLTTYDRLPRVEVVFSRANLMMRDRYTCQYCGKSVKNPKDRTIDHI 129
Query: 196 VPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPK 240
+P SRGG+ WEN+V C KCN +KG +T EEA M+L PKAP+
Sbjct: 130 IPRSRGGKTTWENVVLCCRKCNIKKGNRTPEEAGMKLLSKPKAPR 174
>gi|444432185|ref|ZP_21227344.1| hypothetical protein GS4_20_01300 [Gordonia soli NBRC 108243]
gi|443887014|dbj|GAC69065.1| hypothetical protein GS4_20_01300 [Gordonia soli NBRC 108243]
Length = 202
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 88/175 (50%), Gaps = 15/175 (8%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLL 156
R L+L+ +Y P+ + +RAI L E+ADV+ + ++S + +P+V+R+R +
Sbjct: 38 RVLLLNATYEPLTAISIRRAIVLILRERADVVHADAAVPVVHSATTTLPVPSVIRLRTFV 97
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R + ++R LM+RD F C YCSS+ TIDHV+P SRGG WEN VA C C
Sbjct: 98 KVPYRAVVP--MTRAALMHRDRFRCGYCSSKAT-TIDHVIPRSRGGGHSWENCVACCASC 154
Query: 217 NSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
N RK L E L PK R+L K W QY+
Sbjct: 155 NHRKADHLLSELGWTLRTQLSPPKGRH----------WRLLATVKEIDPSWAQYI 199
>gi|428209416|ref|YP_007093769.1| HNH endonuclease [Chroococcidiopsis thermalis PCC 7203]
gi|428011337|gb|AFY89900.1| HNH endonuclease [Chroococcidiopsis thermalis PCC 7203]
Length = 180
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 83/144 (57%), Gaps = 9/144 (6%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT---INSPNGSFYIPAVLRVRHLLQ 157
+V +Y P++ + KRAI L + KA+ L++ +T + SPN +P+ +R L
Sbjct: 13 VVFSQNYLPISRINVKRAIALLILGKAEALDFGQETELFVRSPNLVMAVPSYIR----LT 68
Query: 158 VVKRRRIKN--NLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFK 215
RI ++R+ ++ RDN+ CQYC + + LTIDHV+P S+GG W N+VAAC +
Sbjct: 69 FTSTERIWKIPPVNRREVLRRDNYACQYCGNNKRLTIDHVIPLSKGGLHTWNNVVAACEQ 128
Query: 216 CNSRKGKKTLEEANMQLSRVPKAP 239
CN K +T +A M L PKAP
Sbjct: 129 CNQYKSDRTPHQAGMLLHSKPKAP 152
>gi|403251875|ref|ZP_10918195.1| restriction endonuclease [actinobacterium SCGC AAA027-L06]
gi|402914798|gb|EJX35801.1| restriction endonuclease [actinobacterium SCGC AAA027-L06]
Length = 174
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 81/139 (58%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ +Y P+ VV +RA+ L ++A +E D+ + GS +P+V+++ +++
Sbjct: 5 LVLNATYEPLGVVSERRALILVLNQRALSVEDSDRVLTYARGSITLPSVIKLNKFVKIPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + LSR+ + RDN C YC +IDHV+P SRGG WEN+V+AC KCN K
Sbjct: 65 RHAVP--LSRRAIFARDNNRCVYCGVTAT-SIDHVIPRSRGGGHNWENVVSACHKCNHLK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
KTL++ +L P+ P
Sbjct: 122 ADKTLKDLGWRLRHTPREP 140
>gi|443293593|ref|ZP_21032687.1| HNH endonuclease [Micromonospora lupini str. Lupac 08]
gi|385883451|emb|CCH20838.1| HNH endonuclease [Micromonospora lupini str. Lupac 08]
Length = 178
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 78/141 (55%), Gaps = 3/141 (2%)
Query: 100 GLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ +Y P+ VV +RA L KA + D ++S + +P+V+R+ ++V
Sbjct: 12 ALVLNATYEPLCVVSVRRAAILVLSAKAVCVADGDGILHSARDALPVPSVVRLTRFVRVP 71
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R + LSR+ + RD + C YC TIDHV P SRGG WEN+VAAC +CN
Sbjct: 72 YRAHV--GLSRRAIFARDGWRCAYCRGPAE-TIDHVFPRSRGGRHAWENVVAACARCNHT 128
Query: 220 KGKKTLEEANMQLSRVPKAPK 240
KG KT E +L +P APK
Sbjct: 129 KGDKTPAELGWRLHALPAAPK 149
>gi|332669258|ref|YP_004452266.1| HNH endonuclease [Cellulomonas fimi ATCC 484]
gi|332338296|gb|AEE44879.1| HNH endonuclease [Cellulomonas fimi ATCC 484]
Length = 200
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 81/142 (57%), Gaps = 3/142 (2%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQV 158
R L+L+ S P+ +V +RA+ L KA VLE + ++S + S +P VL + + V
Sbjct: 40 RSLLLNASMEPLCIVSLRRAVLLVMSGKATVLETDGRLLHSEHASVPLPVVLCLTRYVHV 99
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
RR + +R+ ++ RD+ C YC + T+DHV P SRGG +W N+VAAC +CN
Sbjct: 100 PVRRPVPP--TRRTVLQRDSHRCAYCGGGAD-TVDHVHPRSRGGRHEWTNVVAACVRCNH 156
Query: 219 RKGKKTLEEANMQLSRVPKAPK 240
RK + L E +L P+AP+
Sbjct: 157 RKADRLLHEIGWELGFAPRAPR 178
>gi|389863245|ref|YP_006365485.1| Restriction endonuclease [Modestobacter marinus]
gi|388485448|emb|CCH86992.1| Restriction endonuclease [Modestobacter marinus]
Length = 170
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 92/171 (53%), Gaps = 14/171 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
L+L+ +Y P+ VV +RA+ L KA+ ++ D +++ + +P V+R+ ++V
Sbjct: 6 LLLNATYEPLCVVSSRRAVVLVLAAKAETVDVTDDEVHAERITLAVPIVVRLTRYVRVPY 65
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
++ LSR+ + RD TC YC +IDHVVP SRGG W+N+VAAC +CN K
Sbjct: 66 P--VQVPLSRRAVFTRDGSTCVYCGGSAT-SIDHVVPRSRGGTHSWDNVVAACRRCNHTK 122
Query: 221 GKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
++L E L P+AP + AA R+L R P WR++L
Sbjct: 123 ADRSLAEMGWSLPHPPRAP----------SGAAWRLLGHRTVDP-RWREWL 162
>gi|427420906|ref|ZP_18911089.1| restriction endonuclease [Leptolyngbya sp. PCC 7375]
gi|425756783|gb|EKU97637.1| restriction endonuclease [Leptolyngbya sp. PCC 7375]
Length = 172
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 89/153 (58%), Gaps = 15/153 (9%)
Query: 95 LACFRGLVL-DISYRPVNVVCWKRAICLEFMEKADVLEYYDQT--INSPNGSFYIPAVLR 151
L +R +VL +Y P+ + KRA L +A+ ++ +T + SP+ + IP LR
Sbjct: 10 LPTYRPIVLFSRNYLPMVRINLKRATVLLVTGRAEPVDLLGKTWQMRSPSLTLEIPEHLR 69
Query: 152 VR-----HLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKW 206
+R H+ + ++R+ ++ RD+ +CQYC S+ LT+DHVVP S+GG W
Sbjct: 70 LRAGDSEHIWKTPP-------VNRREVLRRDSHSCQYCGSKRQLTLDHVVPRSQGGAHTW 122
Query: 207 ENLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
+N+V AC CNSRKG +T E ANM L + PKAP
Sbjct: 123 DNVVTACAPCNSRKGARTPELANMPLKQRPKAP 155
>gi|385678429|ref|ZP_10052357.1| HNH endonuclease [Amycolatopsis sp. ATCC 39116]
Length = 165
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 84/142 (59%), Gaps = 5/142 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLLQV 158
L+L+ ++ P+ + +RA+ L KA+V+ + T+++ S +P+V+R+ ++V
Sbjct: 2 LLLNATFEPLTALPLRRAVVLVMCGKAEVVHGDPGGLTLHAATLSLPVPSVIRLSTYVRV 61
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
R ++ L+R LM+RD + C YC R TIDHV+P S+GG W+N VA C KCN
Sbjct: 62 PYRAQVP--LTRAGLMHRDRYKCAYCGGRAE-TIDHVLPRSKGGPHSWQNCVACCAKCNH 118
Query: 219 RKGKKTLEEANMQLSRVPKAPK 240
RK + LE+ QL VP AP+
Sbjct: 119 RKADRLLEDLGWQLRVVPTAPR 140
>gi|407783986|ref|ZP_11131175.1| putative HNH endonuclease [Oceanibaculum indicum P24]
gi|407198866|gb|EKE68893.1| putative HNH endonuclease [Oceanibaculum indicum P24]
Length = 187
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 7/143 (4%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ + F+++ ++L +YDQ + SP +P+V+ ++ + +R
Sbjct: 20 LSYYPLSLWNWQDTVKAVFLDRVNILAHYDQLVRSPTFEMRLPSVISLKQYVPAARR--- 76
Query: 165 KNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
+R N+ RD F+CQYC S + LT DHV+P SRGG WEN+V AC CN KG
Sbjct: 77 -PAFTRFNVFLRDRFSCQYCGELFSTQELTFDHVIPRSRGGRTSWENVVTACGPCNLFKG 135
Query: 222 KKTLEEANMQLSRVPKAPKDYDI 244
+ + M P+ P +++
Sbjct: 136 NRMPRDIGMLPLEPPRQPTSFEL 158
>gi|225873654|ref|YP_002755113.1| HNH endonuclease domain-containing protein [Acidobacterium
capsulatum ATCC 51196]
gi|225792470|gb|ACO32560.1| HNH endonuclease domain protein [Acidobacterium capsulatum ATCC
51196]
Length = 171
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 96/179 (53%), Gaps = 24/179 (13%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ +RA+ L A E +++ +P+V+R+ ++
Sbjct: 6 LVLNASYEPINICGARRALVLVLKGVARTEEEQGAILHAARAHMPLPSVIRL------LE 59
Query: 161 RRRIKNN---LSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACF 214
RRI + LSRKN++ RD TCQYC LT+DHV+P SRGG WENLVA C
Sbjct: 60 YRRIPHQTRALSRKNILLRDRNTCQYCGVVLPAGELTLDHVLPRSRGGLSTWENLVACCH 119
Query: 215 KCNSRKGKKTL-EEANMQLSRVPKAPKDYDILAIPLTSAAIR-MLRVRKGTPVEWRQYL 271
CN RKG + L E+ M+L R P+ P + R ++R+ + ++WR+YL
Sbjct: 120 ACNRRKGNQLLHEQTEMKLLREPR----------PFSLHTSRHIMRMIGHSDLKWRKYL 168
>gi|374312686|ref|YP_005059116.1| HNH endonuclease [Granulicella mallensis MP5ACTX8]
gi|358754696|gb|AEU38086.1| HNH endonuclease [Granulicella mallensis MP5ACTX8]
Length = 220
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 94/179 (52%), Gaps = 24/179 (13%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ +RA+ L A E ++S + +P+V+R+ ++
Sbjct: 50 LVLNASYEPINICGARRALVLVLKGVARTEEEQGSVLHSHRVNMQMPSVIRL------LE 103
Query: 161 RRRIKNN---LSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACF 214
RRI + LSRKN++ RD TCQYC + LT+DHV+P RGG WENLVA C
Sbjct: 104 YRRIPHQTRALSRKNILLRDRNTCQYCQEVLTAAELTLDHVIPRCRGGLSTWENLVACCR 163
Query: 215 KCNSRKGKKTLEE-ANMQLSRVPKAPKDYDILAIPLTSAAIR-MLRVRKGTPVEWRQYL 271
CN RKG + L E +M+L R P+ P + R ++R+ WR+YL
Sbjct: 164 DCNRRKGSQMLHELTDMRLLREPR----------PFSLHTSRHIMRMIGSADANWRKYL 212
>gi|349699253|ref|ZP_08900882.1| endonuclease [Gluconacetobacter europaeus LMG 18494]
Length = 186
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 77/138 (55%), Gaps = 7/138 (5%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI ++++ VL YD + SP S +P+V+ ++ + +
Sbjct: 20 LSYFPLSLWSWQDAIRAVWLDRVSVLSEYDTVVRSPTHSLRLPSVIALKDYIPSAR---- 75
Query: 165 KNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
K +R N+ RDNF+CQYC++R + LT DHV+P S+GG WEN+V AC CN KG
Sbjct: 76 KPAFTRFNVFLRDNFSCQYCNTRFPTQELTFDHVIPRSKGGRTSWENVVTACSPCNLIKG 135
Query: 222 KKTLEEANMQLSRVPKAP 239
+ M R P P
Sbjct: 136 SYMPHQIRMYPDRTPTRP 153
>gi|400975231|ref|ZP_10802462.1| hypothetical protein SPAM21_04818 [Salinibacterium sp. PAMC 21357]
Length = 165
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 84/143 (58%), Gaps = 4/143 (2%)
Query: 98 FRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEY-YDQTINSPNGSFYIPAVLRVRHLL 156
R LVL+ Y P+ VV +KRAI L +KA ++ + + +GS+ P+V+ +R+ +
Sbjct: 1 MRTLVLNAGYEPLAVVSFKRAIVLVLNQKATIIAADSEHPVWGSSGSWDRPSVIILRNYV 60
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
++ RR+ +SR+ ++ RD C YC N TIDHV+P SRGGE WENLVA C +C
Sbjct: 61 RIPSTRRLP--VSRRGVLRRDGHRCGYCGGAAN-TIDHVLPRSRGGEASWENLVACCLRC 117
Query: 217 NSRKGKKTLEEANMQLSRVPKAP 239
N+ K +T E +L P+ P
Sbjct: 118 NNVKSNRTPAEMQWRLRIKPRPP 140
>gi|452943289|ref|YP_007499454.1| HNH endonuclease [Hydrogenobaculum sp. HO]
gi|452881707|gb|AGG14411.1| HNH endonuclease [Hydrogenobaculum sp. HO]
Length = 174
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 87/150 (58%), Gaps = 12/150 (8%)
Query: 100 GLVLDISYRPVNVVCWKRAICLEFMEKADVLEYY-DQTINSPNGSFYIPAVLRVRHLLQV 158
L+LD +Y+P+ ++ ++++ LE+ ++A VLEY+ + I S ++ +P VL+ L
Sbjct: 5 SLLLDRTYKPLTLLDYRKSFLLEYTQRATVLEYHPEAVIRSTYRTYKVPIVLKTNAL--- 61
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYC---SSRENLTIDHVVPASRGGEWKWENLVAACFK 215
+ KN +R N+ RDNFTC YC +T+DH+VP S+GG+W W+NLV AC
Sbjct: 62 -SKTFYKNIPTRYNVYVRDNFTCGYCGKVCDDSEITVDHIVPVSKGGKWTWDNLVTACES 120
Query: 216 CNSRKGKKTLEEANMQLSRVPKAPKDYDIL 245
CN++K + M + P P+ + +L
Sbjct: 121 CNAKKSDNII----MPIYIKPHKPQYFTLL 146
>gi|404214559|ref|YP_006668754.1| HNH endonuclease [Gordonia sp. KTR9]
gi|403645358|gb|AFR48598.1| HNH endonuclease [Gordonia sp. KTR9]
Length = 210
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 78/142 (54%), Gaps = 5/142 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLLQV 158
L+L+ +Y P+ V +RA+ L +AD++ + + ++S + IP V+R+R + V
Sbjct: 46 LLLNATYEPLTAVTVRRAVVLVLRGRADLVHADEHGGAMHSVGTAVPIPTVVRLRKYVHV 105
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
R + ++R LM RD C YC +R TIDHVVP SRGG WEN VA C CN
Sbjct: 106 PYRATVP--MTRDALMRRDRARCGYCGARAT-TIDHVVPRSRGGTHTWENCVACCASCNH 162
Query: 219 RKGKKTLEEANMQLSRVPKAPK 240
RK + L E L VP APK
Sbjct: 163 RKADRLLGELGWALRTVPVAPK 184
>gi|186683058|ref|YP_001866254.1| HNH endonuclease [Nostoc punctiforme PCC 73102]
gi|186465510|gb|ACC81311.1| HNH endonuclease [Nostoc punctiforme PCC 73102]
Length = 214
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 84/144 (58%), Gaps = 9/144 (6%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT---INSPNGSFYIPAVLRVRHLLQ 157
+V +Y P+ + KRAI L KA L + ++SPN +P +R L
Sbjct: 55 VVFSQNYLPLCRINIKRAIVLLVTNKAQPLGLTTEAGWRVHSPNLVIEVPKHIR----LT 110
Query: 158 VVKRRRIKN--NLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFK 215
+ R+ ++R+ ++ RD+ +CQYC S ++LT+DHV+P S+GG W+N+V AC +
Sbjct: 111 IASNERMWKVPPVNRREVLRRDHHSCQYCGSGKHLTLDHVMPRSKGGSHTWDNVVTACER 170
Query: 216 CNSRKGKKTLEEANMQLSRVPKAP 239
CNSRKG +TL E+ MQL PKAP
Sbjct: 171 CNSRKGDRTLFESGMQLRTKPKAP 194
>gi|83859754|ref|ZP_00953274.1| HNH endonuclease family protein [Oceanicaulis sp. HTCC2633]
gi|83852113|gb|EAP89967.1| HNH endonuclease family protein [Oceanicaulis sp. HTCC2633]
Length = 188
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 86/159 (54%), Gaps = 14/159 (8%)
Query: 93 DELACFRGLVLD-----ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIP 147
D+L C LVL+ +SY P++ W+ AI F+E+ D++ Y+ I SP+ S P
Sbjct: 9 DDLRC---LVLNADYQPLSYYPLSTWPWQEAIKAAFLERVDIVSEYNTEIRSPSRSIRAP 65
Query: 148 AVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR--ENLTIDHVVPASRGGEWK 205
+V+ +R + + +R N+ RD F CQYC + + LT DHVVP + GG
Sbjct: 66 SVVALRDYVSQDR----PPAFTRFNVFLRDGFRCQYCGTDKLDQLTFDHVVPRAYGGRTT 121
Query: 206 WENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDI 244
W+N+VAAC CN +KG +T EA M L R P + +
Sbjct: 122 WDNIVAACAPCNLKKGGRTPREAKMPLLRDADRPSQHQL 160
>gi|347760170|ref|YP_004867731.1| endonuclease [Gluconacetobacter xylinus NBRC 3288]
gi|347579140|dbj|BAK83361.1| endonuclease [Gluconacetobacter xylinus NBRC 3288]
Length = 196
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 78/138 (56%), Gaps = 7/138 (5%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ ++++ VL YD ++SP+ S +P+V+ ++ + +
Sbjct: 30 LSYFPLSLWSWQDAVRAVWLDRVSVLSEYDTIVHSPSQSLRLPSVIALKDYIPAAR---- 85
Query: 165 KNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
K +R N+ RDNF+CQYC++R + LT DHV+P S+GG WEN+V AC CN KG
Sbjct: 86 KPAFTRFNVFLRDNFSCQYCNTRFPTQELTFDHVIPRSKGGRTSWENVVTACSPCNLIKG 145
Query: 222 KKTLEEANMQLSRVPKAP 239
E M P P
Sbjct: 146 SYMPHEIRMYPDHTPARP 163
>gi|359789143|ref|ZP_09292099.1| HNH endonuclease [Mesorhizobium alhagi CCNWXJ12-2]
gi|359255001|gb|EHK57954.1| HNH endonuclease [Mesorhizobium alhagi CCNWXJ12-2]
Length = 185
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 83/140 (59%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ YD++++S + S +P+V+ +++ ++ +
Sbjct: 22 LSYYPLSLWGWQDAIKAVFLDRVNIVAEYDRSVSSVSFSMKLPSVVSLKNYVKPSRHPA- 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC + E+LT DHV+P GG WEN+VAAC CN RKG
Sbjct: 81 ---FTRFNVFLRDRFQCQYCGTSEDLTFDHVIPRHSGGATTWENVVAACSPCNLRKGGMM 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
+A M + P P +D+
Sbjct: 138 PAQAKMWPLQKPYHPTVHDL 157
>gi|374293013|ref|YP_005040048.1| putative HNH endonuclease [Azospirillum lipoferum 4B]
gi|357424952|emb|CBS87832.1| putative HNH endonuclease [Azospirillum lipoferum 4B]
Length = 229
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 93/183 (50%), Gaps = 15/183 (8%)
Query: 70 ASLNVSGKGISGESEEYDSDEEFDELACFRGLVLD-----ISYRPVNVVCWKRAICLEFM 124
AS++ +G ++ E+ D LVL+ +SY P+++ W+ A+ F+
Sbjct: 25 ASVSRAGIQTRFQTREWPLAPPPDHCP---ALVLNADFRPLSYFPLSLWSWQEAVKAVFL 81
Query: 125 EKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYC 184
E+ +++ +YD+ + SP+ +P+V+ ++ + +R +R N+ RD FTCQYC
Sbjct: 82 ERVNIVSHYDRVVRSPSFEVRLPSVISLKEFIPATRR----PAFTRFNVFLRDRFTCQYC 137
Query: 185 S---SRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKD 241
+LT DHV+P SRGG WEN++ +C CN KG + M P P
Sbjct: 138 GRPFPTHDLTFDHVIPRSRGGRTTWENVITSCSACNLAKGDRLPHVCGMIPLSPPFQPTA 197
Query: 242 YDI 244
Y++
Sbjct: 198 YEL 200
>gi|325676017|ref|ZP_08155700.1| HNH endonuclease [Rhodococcus equi ATCC 33707]
gi|325553255|gb|EGD22934.1| HNH endonuclease [Rhodococcus equi ATCC 33707]
Length = 221
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 87/152 (57%), Gaps = 7/152 (4%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLL 156
R L+L+ ++ P+ + +RA+ L +KAD + + I+S S +P+V+R+R+ +
Sbjct: 55 RVLLLNATFEPLTALPARRAVVLMVCDKADAVHEDPLGPVIHSEGCSLQVPSVIRLRNYV 114
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R R+ ++R LM+RD F C YC ++ TIDHVVP SRGG WEN VA C C
Sbjct: 115 RVPYRSRVP--MTRAALMHRDRFRCGYCGNKAE-TIDHVVPRSRGGGHSWENCVACCAPC 171
Query: 217 NSRKGKKTLEEANMQL--SRVPKAPKDYDILA 246
N RK K L E L + VP + + +L+
Sbjct: 172 NHRKADKLLTELGWTLRTALVPPSGPHWRLLS 203
>gi|407779506|ref|ZP_11126761.1| HNH endonuclease [Nitratireductor pacificus pht-3B]
gi|407298637|gb|EKF17774.1| HNH endonuclease [Nitratireductor pacificus pht-3B]
Length = 185
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ Y+ ++SP+ S +P+V+ ++ VK R
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIVAEYEHQVSSPSFSMRLPSVICLK---TYVKPSRY 78
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC +RE+LT DHV+P GG WEN+VAAC CN +KG
Sbjct: 79 PA-FTRFNVFLRDRFQCQYCGTREDLTFDHVIPRRSGGVTSWENVVAACSPCNLKKGGLM 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
A M + P P +D+
Sbjct: 138 PARAKMWPQQKPFRPTVHDL 157
>gi|170783072|ref|YP_001711406.1| hypothetical protein CMS_2768 [Clavibacter michiganensis subsp.
sepedonicus]
gi|169157642|emb|CAQ02840.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
sepedonicus]
Length = 227
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 84/144 (58%), Gaps = 4/144 (2%)
Query: 98 FRGLVLDISYRPVNVVCWKRAICLEFMEKADVL-EYYDQTINSPNGSFYIPAVLRVRHLL 156
R LVL+ + P+ VV +KRA+ L KA +L + + I G++ P+V+ + +
Sbjct: 63 VRTLVLNAGFEPLAVVSFKRALVLVLSGKATMLAQDEEHPILGNGGAWGRPSVILLTRYV 122
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
++ RR+ +SR+ ++ RD C YC+ R TIDHV+P SRGG+ WENLVA C C
Sbjct: 123 RIPHARRVP--VSRRGVLRRDGGRCAYCA-RNATTIDHVLPRSRGGKDTWENLVACCLSC 179
Query: 217 NSRKGKKTLEEANMQLSRVPKAPK 240
N+RK +T EE L P+AP+
Sbjct: 180 NNRKSDRTPEEMGWTLRTPPRAPQ 203
>gi|148273649|ref|YP_001223210.1| putative restriction endonuclease [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147831579|emb|CAN02547.1| putative restriction endonuclease [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 165
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 84/144 (58%), Gaps = 4/144 (2%)
Query: 98 FRGLVLDISYRPVNVVCWKRAICLEFMEKADVL-EYYDQTINSPNGSFYIPAVLRVRHLL 156
R LVL+ + P+ VV +KRA+ L KA +L + + I G++ P+V+ + +
Sbjct: 1 MRTLVLNAGFEPLAVVSFKRALVLVLSGKATMLAQDEEHPILGNGGAWGRPSVILLTRYV 60
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
++ RR+ +SR+ ++ RD C YC+ R TIDHV+P SRGG+ WENLVA C C
Sbjct: 61 RIPHARRVP--VSRRGVLRRDGGRCAYCA-RNATTIDHVLPRSRGGKDTWENLVACCLSC 117
Query: 217 NSRKGKKTLEEANMQLSRVPKAPK 240
N+RK +T EE L P+AP+
Sbjct: 118 NNRKSDRTPEEMGWTLRTPPRAPQ 141
>gi|349685635|ref|ZP_08896777.1| endonuclease [Gluconacetobacter oboediens 174Bp2]
Length = 186
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 77/138 (55%), Gaps = 7/138 (5%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI ++++ VL YD + SP S +P+V+ ++ + +
Sbjct: 20 LSYFPLSLWSWQDAIRAVWLDRVSVLSEYDTVVRSPTHSLRLPSVIALKDYIPSAR---- 75
Query: 165 KNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
K +R N+ RDNF+CQYC++R + LT DHV+P SRGG WEN+V AC CN KG
Sbjct: 76 KPAFTRFNVFLRDNFSCQYCNTRFPTQELTFDHVIPRSRGGRTSWENVVTACSPCNLIKG 135
Query: 222 KKTLEEANMQLSRVPKAP 239
+ M + P P
Sbjct: 136 SYMPHQIRMYPASTPARP 153
>gi|428316931|ref|YP_007114813.1| HNH endonuclease [Oscillatoria nigro-viridis PCC 7112]
gi|428240611|gb|AFZ06397.1| HNH endonuclease [Oscillatoria nigro-viridis PCC 7112]
Length = 185
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 83/144 (57%), Gaps = 9/144 (6%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYY---DQTINSPNGSFYIPAVLRVRHLLQ 157
+V +Y P++ V KRAI L KA+ L++ + SP+ S ++P +R L
Sbjct: 13 VVFSQNYLPMSRVNIKRAIVLLVTGKAEPLDFSIGNGWLVRSPSNSIHVPEQIR----LT 68
Query: 158 VVKRRRIKN--NLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFK 215
R R+ ++R+ ++ RD +CQYC S +LT+DHV+P S+GG W+N+V AC
Sbjct: 69 FGNRERLWKVPPVNRREVLRRDAHSCQYCGSSRHLTLDHVMPRSKGGPHTWDNVVTACEG 128
Query: 216 CNSRKGKKTLEEANMQLSRVPKAP 239
CNSRKG +T EA M L PKAP
Sbjct: 129 CNSRKGDRTPVEAGMSLRTKPKAP 152
>gi|414341051|ref|YP_006982572.1| 5-methylcytosine-specific restriction protein [Gluconobacter
oxydans H24]
gi|411026386|gb|AFV99640.1| 5-methylcytosine-specific restriction protein [Gluconobacter
oxydans H24]
gi|453330809|dbj|GAC87136.1| 5-methylcytosine-specific restriction protein [Gluconobacter
thailandicus NBRC 3255]
Length = 228
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 85/151 (56%), Gaps = 13/151 (8%)
Query: 98 FRGLVLD-----ISYRPVNVVCWKRAICLEFMEKADVL-EYYDQTINSPNGSFYIPAVLR 151
F LVL+ +SY P+++ W+ A+ F+++ VL EY D ++SP+ + +P+V+
Sbjct: 49 FPALVLNADFRPLSYFPLSLWSWQEAVKAVFLDRVSVLSEYEDGVVHSPSMTMRLPSVIA 108
Query: 152 VRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWEN 208
++ + + K +R N+ RDNF+CQYC R LT DHV+P ++GG+ W+N
Sbjct: 109 LKDYIPSAR----KPAFTRFNVFLRDNFSCQYCHDRLPTHELTFDHVIPRAKGGKTTWQN 164
Query: 209 LVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
+V AC CN KG + +E M R P P
Sbjct: 165 VVTACSPCNLLKGSRLPKEIGMYPHRKPDQP 195
>gi|334116761|ref|ZP_08490853.1| HNH endonuclease [Microcoleus vaginatus FGP-2]
gi|333461581|gb|EGK90186.1| HNH endonuclease [Microcoleus vaginatus FGP-2]
Length = 171
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 83/144 (57%), Gaps = 9/144 (6%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYY---DQTINSPNGSFYIPAVLRVRHLLQ 157
+V +Y P++ V KRAI L KA+ L++ + SP S ++P +R L
Sbjct: 13 VVFSQNYLPMSRVNIKRAIVLLVTGKAEPLDFSIGNGWVVRSPTTSIHVPEQIR----LT 68
Query: 158 VVKRRRIKN--NLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFK 215
R R+ ++R+ ++ RD +CQYC S +LT+DHV+P S+GG W+N+V AC +
Sbjct: 69 FGNRERLWKVPPVNRREVLRRDAHSCQYCGSNRHLTLDHVMPRSKGGPHTWDNVVTACER 128
Query: 216 CNSRKGKKTLEEANMQLSRVPKAP 239
CNSRKG +T EA M L PKAP
Sbjct: 129 CNSRKGDRTPIEAGMSLRTKPKAP 152
>gi|312140373|ref|YP_004007709.1| hnh endonuclease [Rhodococcus equi 103S]
gi|311889712|emb|CBH49029.1| HNH endonuclease [Rhodococcus equi 103S]
Length = 204
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 87/152 (57%), Gaps = 7/152 (4%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLL 156
R L+L+ ++ P+ + +RA+ L +KAD + + I+S S +P+V+R+R+ +
Sbjct: 38 RVLLLNATFEPLTALPARRAVVLMVCDKADAVHEDPLGPVIHSEGCSLQVPSVIRLRNYV 97
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R R+ ++R LM+RD F C YC ++ TIDHVVP SRGG WEN VA C C
Sbjct: 98 RVPYRSRVP--MTRAALMHRDRFRCGYCGNKAE-TIDHVVPRSRGGGHSWENCVACCAPC 154
Query: 217 NSRKGKKTLEEANMQL--SRVPKAPKDYDILA 246
N RK K L E L + VP + + +L+
Sbjct: 155 NHRKADKLLTELGWTLRTALVPPSGPHWRLLS 186
>gi|300024898|ref|YP_003757509.1| HNH endonuclease [Hyphomicrobium denitrificans ATCC 51888]
gi|299526719|gb|ADJ25188.1| HNH endonuclease [Hyphomicrobium denitrificans ATCC 51888]
Length = 189
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 82/140 (58%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ F+++ +++ Y++ + SP+ +P+V+ L+ + +
Sbjct: 26 LSYYPLSLWSWQDAVKAVFLDRVNIVSEYERYVRSPSFELKLPSVVS----LKTYVKPAL 81
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD FTCQYC + +LT DH++P SRGG+ +W+N+V AC CN +KG
Sbjct: 82 YPAFTRFNVFLRDRFTCQYCGDKSDLTFDHLIPRSRGGQTRWDNVVTACAPCNLKKGGMM 141
Query: 225 LEEANMQLSRVPKAPKDYDI 244
+ A M + P P +D+
Sbjct: 142 PKVAGMFPAHEPMRPTVFDL 161
>gi|414076171|ref|YP_006995489.1| HNH endonuclease [Anabaena sp. 90]
gi|413969587|gb|AFW93676.1| HNH endonuclease [Anabaena sp. 90]
Length = 172
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 85/142 (59%), Gaps = 5/142 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQ---TINSPNGSFYIPAVLRVRHLLQ 157
+V +Y P+ + KRAI L KA+ LE+ + I+S +P +R+ +
Sbjct: 13 VVFSQNYLPLCRINIKRAIVLLVSNKAEPLEFSTEDGWLIHSSRFVLSVPKHIRL--TIA 70
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
+R ++R+ ++ RD+ +CQYC + ++LT+DHV+P S+GG W+N+V AC KCN
Sbjct: 71 ATERMWKIPPVNRREVLRRDHSSCQYCGTNKHLTLDHVIPRSKGGRHTWDNVVIACEKCN 130
Query: 218 SRKGKKTLEEANMQLSRVPKAP 239
SRKG KT EA M L ++PKAP
Sbjct: 131 SRKGNKTPTEAGMPLRKLPKAP 152
>gi|163759902|ref|ZP_02166986.1| hypothetical protein HPDFL43_16766 [Hoeflea phototrophica DFL-43]
gi|162282860|gb|EDQ33147.1| hypothetical protein HPDFL43_16766 [Hoeflea phototrophica DFL-43]
Length = 185
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 80/140 (57%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ F+++ ++ YDQ ++SP+ S +P+V+ ++ +K R
Sbjct: 22 LSYYPLSLWSWQDAVKAVFLDRVQIVAEYDQAVSSPSFSMRLPSVVCLK---TYIKPSRF 78
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC S LT DHV+P GG+ WEN+VAAC CN +KG
Sbjct: 79 PA-FTRFNVFLRDRFECQYCGSPNELTFDHVIPRRCGGQTTWENVVAACSPCNLKKGGVM 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
+EA M + P P D+
Sbjct: 138 PKEAGMIPQQKPYRPSVQDL 157
>gi|332707958|ref|ZP_08427958.1| restriction endonuclease [Moorea producens 3L]
gi|332353275|gb|EGJ32815.1| restriction endonuclease [Moorea producens 3L]
Length = 192
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 86/142 (60%), Gaps = 5/142 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYD---QTINSPNGSFYIPAVLRVRHLLQ 157
+V +Y P+N V KRAI L KA+ ++++ + SP+ +P+ +R+ + +
Sbjct: 18 VVFSKNYLPINRVNIKRAIALLVTGKAEPIDFFGGKGYKVRSPSVVILVPSHIRL-IVTE 76
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
R+ ++R+ ++ RD CQYC S + LT+DHV+P S+GG+ W+N+V AC +CN
Sbjct: 77 TEPTWRVPP-VNRREVLRRDKHRCQYCGSTKKLTLDHVMPRSKGGKHSWDNVVTACERCN 135
Query: 218 SRKGKKTLEEANMQLSRVPKAP 239
S KG +T +A M+L R PKAP
Sbjct: 136 SLKGNRTPHQAGMKLPRQPKAP 157
>gi|330469687|ref|YP_004407430.1| hnh endonuclease [Verrucosispora maris AB-18-032]
gi|328812658|gb|AEB46830.1| hnh endonuclease [Verrucosispora maris AB-18-032]
Length = 170
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 78/141 (55%), Gaps = 3/141 (2%)
Query: 100 GLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ +Y P+ VV +RA L KA + + ++S + +P+V+R+ ++V
Sbjct: 5 ALVLNATYEPLCVVSVRRAAILVLSAKAVCVADGEGVLHSARSALPVPSVVRLTRFVRVP 64
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R + LSR+ + RD + C YC TIDHV P SRGG WEN+VAAC +CN
Sbjct: 65 YRTHV--GLSRRAIFARDGWRCAYCRGPAE-TIDHVFPRSRGGPHAWENVVAACARCNHT 121
Query: 220 KGKKTLEEANMQLSRVPKAPK 240
KG KT E +L +P APK
Sbjct: 122 KGDKTPAELGWRLHSLPAAPK 142
>gi|144898492|emb|CAM75356.1| HNH endonuclease:HNH nuclease [Magnetospirillum gryphiswaldense
MSR-1]
Length = 190
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 82/143 (57%), Gaps = 7/143 (4%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ ++ +V+ Y++ I SP+ +P+V+ ++ + R
Sbjct: 23 LSYFPLSLWSWQEAVKAVVSDRVNVVSEYEREIRSPSSRMRLPSVISLKEYVPAPNRPA- 81
Query: 165 KNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
+R N+ RD+FTCQYC + +LT DHV+P + GG W N+VAAC CN +KG
Sbjct: 82 ---FTRFNVFLRDHFTCQYCGQDFATHDLTFDHVIPRALGGRTTWGNVVAACSPCNVKKG 138
Query: 222 KKTLEEANMQLSRVPKAPKDYDI 244
K + +A M+L PK P ++ +
Sbjct: 139 HKLVAQAGMRLLNWPKEPSNFQL 161
>gi|409391110|ref|ZP_11242802.1| hypothetical protein GORBP_068_01010 [Gordonia rubripertincta NBRC
101908]
gi|403198923|dbj|GAB86036.1| hypothetical protein GORBP_068_01010 [Gordonia rubripertincta NBRC
101908]
Length = 199
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 79/144 (54%), Gaps = 5/144 (3%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT--INSPNGSFYIPAVLRVRHLL 156
R L+L+ +Y P++ V +RA+ L +AD++ + +S +P V+R+R+ +
Sbjct: 33 RVLLLNATYEPLSAVTIRRAVVLILRGRADLVHADESAGAFHSAATEVAVPTVIRLRNYV 92
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R + ++R LM+RD F C YC + TIDHVVP SRGG WEN VA C C
Sbjct: 93 RVPYRATVP--MTRAALMHRDRFRCGYCG-KHATTIDHVVPRSRGGAHNWENCVACCASC 149
Query: 217 NSRKGKKTLEEANMQLSRVPKAPK 240
N RK + L E L P APK
Sbjct: 150 NHRKADRLLSELGWTLRNRPVAPK 173
>gi|410943682|ref|ZP_11375423.1| 5-methylcytosine-specific restriction protein [Gluconobacter
frateurii NBRC 101659]
Length = 190
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 84/151 (55%), Gaps = 13/151 (8%)
Query: 98 FRGLVLD-----ISYRPVNVVCWKRAICLEFMEKADVL-EYYDQTINSPNGSFYIPAVLR 151
F LVL+ +SY P+++ W+ A+ F+++ VL EY D ++SP+ + +P+V+
Sbjct: 11 FPALVLNADFRPLSYFPLSLWSWQEAVKAVFLDRVSVLSEYEDGVVHSPSMTMRLPSVIA 70
Query: 152 VRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWEN 208
++ + + K +R N+ RDNF+CQYC R LT DHV+P ++GG+ W+N
Sbjct: 71 LKDYIPSAR----KPAFTRFNVFLRDNFSCQYCHDRLPTHELTFDHVIPRAKGGKTTWQN 126
Query: 209 LVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
+V AC CN KG + E M R P P
Sbjct: 127 VVTACSPCNLLKGSRLPSEIGMYPHRKPDQP 157
>gi|195952450|ref|YP_002120740.1| HNH endonuclease [Hydrogenobaculum sp. Y04AAS1]
gi|195932062|gb|ACG56762.1| HNH endonuclease [Hydrogenobaculum sp. Y04AAS1]
Length = 174
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 86/150 (57%), Gaps = 12/150 (8%)
Query: 100 GLVLDISYRPVNVVCWKRAICLEFMEKADVLEYY-DQTINSPNGSFYIPAVLRVRHLLQV 158
L+LD +Y+P+ ++ ++++ LE+ ++A VLEY+ + I S ++ +P VL+ L
Sbjct: 5 SLLLDKTYKPLTLLDYRKSFLLEYTQRATVLEYHPEAVIRSTYRTYKVPIVLKTNAL--- 61
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYC---SSRENLTIDHVVPASRGGEWKWENLVAACFK 215
+ KN +R N+ RDNFTC YC +T+DH++P S+GG+W W+NLV AC
Sbjct: 62 -SKTFYKNIPTRYNVYVRDNFTCGYCGKVCDDSEITVDHIIPVSKGGKWTWDNLVTACES 120
Query: 216 CNSRKGKKTLEEANMQLSRVPKAPKDYDIL 245
CN+ K + M + P P+ + +L
Sbjct: 121 CNASKSDNII----MPIYIKPHKPQYFTLL 146
>gi|393723337|ref|ZP_10343264.1| HNH endonuclease family protein [Sphingomonas sp. PAMC 26605]
Length = 188
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 75/128 (58%), Gaps = 4/128 (3%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P++V W+ AI F+++ D++ Y++ + SP +P+V+ ++ + R
Sbjct: 25 LSYYPLSVWPWQTAIKAVFLDRVDIVAEYEREVRSPTQRIKLPSVIALKSYV----RPSA 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC + +LT DH+VP ++GG WEN+ AC CN +KG +T
Sbjct: 81 FPAFTRFNLFLRDKFVCQYCGAGNDLTFDHIVPRAQGGRTTWENVATACSPCNLKKGGRT 140
Query: 225 LEEANMQL 232
++A M L
Sbjct: 141 PKQAGMPL 148
>gi|393719988|ref|ZP_10339915.1| HNH endonuclease [Sphingomonas echinoides ATCC 14820]
Length = 188
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 75/128 (58%), Gaps = 4/128 (3%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ D++ Y++ + SP +P+V+ ++ + R
Sbjct: 25 LSYYPLSLWPWQTAIKAVFLDRVDIVAEYEREVRSPTQRIKLPSVIALKSYV----RPSA 80
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC S +LT DH+VP ++GG WEN+ AC CN +KG +T
Sbjct: 81 FPAFTRFNLFLRDKFLCQYCGSPHDLTFDHIVPRAQGGRTTWENVATACSPCNLKKGGRT 140
Query: 225 LEEANMQL 232
++A M L
Sbjct: 141 PKQAGMPL 148
>gi|329851857|ref|ZP_08266538.1| HNH endonuclease family protein [Asticcacaulis biprosthecum C19]
gi|328839706|gb|EGF89279.1| HNH endonuclease family protein [Asticcacaulis biprosthecum C19]
Length = 172
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 77/140 (55%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P++ W+ + F + DV+ YD I+SP+ +P+V+ ++ + +
Sbjct: 9 LSYYPLSTKPWQDVVKAVFEGRVDVVSTYDIEIHSPSMKMRLPSVVSLKTYID----QNR 64
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC S +LT DHVVP S+GG+ W N++ AC CN RKG KT
Sbjct: 65 PPAFTRYNVFLRDRFCCQYCGSPHDLTFDHVVPVSQGGKSSWTNILTACAPCNLRKGGKT 124
Query: 225 LEEANMQLSRVPKAPKDYDI 244
+A M ++ P P + +
Sbjct: 125 PVQARMMPTKNPHRPTMFQL 144
>gi|363420173|ref|ZP_09308267.1| hypothetical protein AK37_05677 [Rhodococcus pyridinivorans AK37]
gi|359735969|gb|EHK84920.1| hypothetical protein AK37_05677 [Rhodococcus pyridinivorans AK37]
Length = 182
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 83/157 (52%), Gaps = 5/157 (3%)
Query: 86 YDSDEEFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGS 143
+DS + R L+L+ +Y P+ + +RA+ L KAD + + + S S
Sbjct: 3 HDSTATVPDWLKRRVLLLNATYEPLTALPARRAVVLMAGGKADTVHDDPLAPLVRSAEWS 62
Query: 144 FYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGE 203
+P+V+R+R+ ++V R+ L+R LM+RD C YC + TIDHVVP SRGGE
Sbjct: 63 VQLPSVIRLRNYVRVPYHARVP--LTRAALMHRDLNRCAYCGGKAE-TIDHVVPRSRGGE 119
Query: 204 WKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPK 240
WEN VA C CN RK K L E L VP PK
Sbjct: 120 HTWENCVACCAPCNHRKADKLLTELGWTLRVVPNPPK 156
>gi|443672532|ref|ZP_21137615.1| putative uncharacterized protein [Rhodococcus sp. AW25M09]
gi|443414867|emb|CCQ15953.1| putative uncharacterized protein [Rhodococcus sp. AW25M09]
Length = 220
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 78/136 (57%), Gaps = 5/136 (3%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT--INSPNGSFYIPAVLRVRHLL 156
R L+L+ ++ P+ + +RA+ L KADV+ + I S + S +P+V+R+R +
Sbjct: 54 RVLLLNATFEPLTALPMRRAVVLLVCGKADVVHDDPEGPFIRSADFSVQVPSVIRLRTFV 113
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R R+ ++R LM+RD F C YC S+ T+DHVVP SRGG WEN VA C C
Sbjct: 114 RVPYRARVP--MTRAALMHRDRFRCAYCGSKAE-TVDHVVPRSRGGGHSWENCVACCASC 170
Query: 217 NSRKGKKTLEEANMQL 232
N RK K L E L
Sbjct: 171 NHRKADKLLSEIGWTL 186
>gi|288959357|ref|YP_003449698.1| HNH endonuclease [Azospirillum sp. B510]
gi|288911665|dbj|BAI73154.1| HNH endonuclease [Azospirillum sp. B510]
Length = 187
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 78/143 (54%), Gaps = 7/143 (4%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ F+E+ +++ +YD+ + SP+ +P+V+ ++ + +R
Sbjct: 20 LSYFPLSLWSWQEAVKAVFLERVNIVSHYDRVVRSPSFEVRLPSVISLKEFIPATRR--- 76
Query: 165 KNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
+R N+ RD FTCQYC +LT DHV+P SRGG WEN++ +C CN KG
Sbjct: 77 -PAFTRFNVFLRDRFTCQYCGRPFPTHDLTFDHVIPRSRGGRTTWENVITSCSACNLAKG 135
Query: 222 KKTLEEANMQLSRVPKAPKDYDI 244
+ M P P Y++
Sbjct: 136 DRLPHVCGMIPLSPPFQPSAYEL 158
>gi|302869396|ref|YP_003838033.1| HNH endonuclease [Micromonospora aurantiaca ATCC 27029]
gi|315504125|ref|YP_004083012.1| hnh endonuclease [Micromonospora sp. L5]
gi|302572255|gb|ADL48457.1| HNH endonuclease [Micromonospora aurantiaca ATCC 27029]
gi|315410744|gb|ADU08861.1| HNH endonuclease [Micromonospora sp. L5]
Length = 179
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 88/172 (51%), Gaps = 14/172 (8%)
Query: 100 GLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ +Y P+ VV +RA L KA + + ++S + +P+V+R+ ++V
Sbjct: 12 ALVLNATYEPLCVVSVRRAAILVLSAKAVCVADGEGILHSARNALPVPSVVRLTRYVRVP 71
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R + LSR+ + RD + C YC TIDHV P SRGG WEN+VAAC +CN
Sbjct: 72 YRTHV--GLSRRAVFARDGWRCAYCRGPAE-TIDHVFPRSRGGRHAWENVVAACARCNHT 128
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
KG KT E +L +P APK AA R+L R P W +L
Sbjct: 129 KGDKTPAELGWRLHHLPAAPK----------GAAWRVLGHRAPDP-RWADWL 169
>gi|452946501|gb|EME51998.1| HNH endonuclease [Amycolatopsis decaplanina DSM 44594]
Length = 164
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 82/146 (56%), Gaps = 15/146 (10%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADV-------LEYYDQTINSPNGSFYIPAVLRVR 153
++L+ ++ P+ + +RA+ L KA+V LE + T++ P +P+V+R+
Sbjct: 1 MLLNATFEPLTALPLRRAVVLVMCGKAEVVHGDPAGLELHAATVSLP-----VPSVIRLS 55
Query: 154 HLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAAC 213
++V R ++ L+R LM+RD + C YC R TIDHVVP SRGG W N VA C
Sbjct: 56 TYVRVPYRAQVP--LTRAGLMHRDRYRCAYCGGRAE-TIDHVVPRSRGGPHSWTNCVACC 112
Query: 214 FKCNSRKGKKTLEEANMQLSRVPKAP 239
KCN RK K L E +L VP+AP
Sbjct: 113 AKCNHRKADKLLSEIGWRLRVVPRAP 138
>gi|119386656|ref|YP_917711.1| HNH endonuclease [Paracoccus denitrificans PD1222]
gi|119377251|gb|ABL72015.1| HNH endonuclease [Paracoccus denitrificans PD1222]
Length = 198
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 75/124 (60%), Gaps = 4/124 (3%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ F+++ ++ YD+ + S + + IP+V+ ++ ++ KR
Sbjct: 34 LSYYPLSLWPWQEAVKAVFLDRVQIIAEYDEVVRSQHHAIRIPSVVVLKDFVKPQKRV-- 91
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R NL RD F CQYC ++ LT DHV+P SRGG WEN+VAAC CN RK K
Sbjct: 92 --AFTRFNLFLRDEFCCQYCGAKGELTFDHVLPRSRGGITSWENVVAACSPCNLRKANKL 149
Query: 225 LEEA 228
L+ +
Sbjct: 150 LKNS 153
>gi|383828286|ref|ZP_09983375.1| restriction endonuclease [Saccharomonospora xinjiangensis XJ-54]
gi|383460939|gb|EID53029.1| restriction endonuclease [Saccharomonospora xinjiangensis XJ-54]
Length = 240
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 88/175 (50%), Gaps = 15/175 (8%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTI--NSPNGSFYIPAVLRVRHLL 156
R L+L+ ++ P+ + +RAI L KA+V+ I S + +P+V+R+ +
Sbjct: 74 RVLLLNATFEPLTALPLRRAIVLLVCGKAEVVHEDPAGILLRSATMTVELPSVIRLSRYV 133
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R ++ L+R LM+RD F C YC + TIDHVVP SRGG WEN VA C C
Sbjct: 134 RVPYRAQVP--LTRAGLMHRDRFRCAYCGGKAE-TIDHVVPRSRGGAHSWENCVACCATC 190
Query: 217 NSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
N RK K L E +L VP+ P R+L K WR+YL
Sbjct: 191 NHRKADKLLSELGWRLRVVPREPHGPH----------WRLLAHAKEADPSWRRYL 235
>gi|357392613|ref|YP_004907454.1| hypothetical protein KSE_57250 [Kitasatospora setae KM-6054]
gi|311899090|dbj|BAJ31498.1| hypothetical protein KSE_57250 [Kitasatospora setae KM-6054]
Length = 175
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 84/150 (56%), Gaps = 4/150 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNG-SFYIPAVLRVRHLLQVV 159
LVL+ SY P++ V +RA+ L +KA V + + + +G +P V+R+ ++V
Sbjct: 5 LVLNASYEPLSTVPLRRAVVLVLQDKAVVEQAHPLRVVRGSGVQLPVPRVIRLTRYVRVP 64
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R+R SR+ ++ RD F C YC+ R T+DH+ P SRGG W N VAAC +CN R
Sbjct: 65 FRQRAP--WSRRGVLARDQFRCAYCA-RRGTTVDHLAPRSRGGADSWMNTVAACAECNQR 121
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPL 249
K +T E+A M+L R P P L + L
Sbjct: 122 KADRTPEQAGMRLLRRPFEPTPEATLMLAL 151
>gi|146339884|ref|YP_001204932.1| HNH endonuclease:HNH nuclease [Bradyrhizobium sp. ORS 278]
gi|146192690|emb|CAL76695.1| conserved hypothetical protein; putative HNH endonuclease:HNH
nuclease [Bradyrhizobium sp. ORS 278]
Length = 178
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 81/145 (55%), Gaps = 12/145 (8%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P++VVCW+ AI E V+ YD+ + SP+ + +P+V+ +R + R +
Sbjct: 17 LSYFPLSVVCWEDAIRAVVSESHVVVAEYDRIVRSPSVTMRLPSVIALRDYV----RPTM 72
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRE---NLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
+ +R N+ RD F CQYC R LT DHVVP + GGE W N+VAAC CN+RK
Sbjct: 73 RVPFTRFNVFLRDRFECQYCGGRYLHGELTFDHVVPRADGGETSWTNIVAACSPCNARKD 132
Query: 222 KKTLEEANMQLSRVPKAPKDYDILA 246
++ LE R P P +++A
Sbjct: 133 RRYLEP-----RRPPFEPTRQELMA 152
>gi|378550692|ref|ZP_09825908.1| hypothetical protein CCH26_11416 [Citricoccus sp. CH26A]
Length = 164
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 76/143 (53%), Gaps = 3/143 (2%)
Query: 98 FRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQ 157
R LVL+ Y P++VV ++RAI L KA VL + P + PAV+ + ++
Sbjct: 1 MRTLVLNAGYEPLSVVSYRRAILLVGTGKASVLADGGDPVVGPTCTVMRPAVILLNRYIR 60
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
+ +SR+ ++ RD C YC R T+DH+ P SRGGE WENLVA C KCN
Sbjct: 61 IPHAD--TAAVSRRGVLRRDGHQCGYCG-RSATTVDHIHPRSRGGEDSWENLVACCLKCN 117
Query: 218 SRKGKKTLEEANMQLSRVPKAPK 240
+ KG +TL + L P P+
Sbjct: 118 NAKGDRTLAQMGWTLRVTPARPR 140
>gi|322434180|ref|YP_004216392.1| HNH endonuclease [Granulicella tundricola MP5ACTX9]
gi|321161907|gb|ADW67612.1| HNH endonuclease [Granulicella tundricola MP5ACTX9]
Length = 218
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 94/179 (52%), Gaps = 24/179 (13%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+N+ +RA+ L A E +++ + +P+V+R+ ++
Sbjct: 48 LVLNASYEPINICGARRALVLVLKGVARTEEAQGAILHAAKVNVAMPSVIRL------LE 101
Query: 161 RRRIKNN---LSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACF 214
RRI + LSRKN++ RD CQYCS + LT+DHV+P SRGG WENLVA C
Sbjct: 102 YRRIPHQTRALSRKNILLRDRNCCQYCSVILTAGELTLDHVIPRSRGGLSTWENLVACCH 161
Query: 215 KCNSRKGKKTLEE-ANMQLSRVPKAPKDYDILAIPLTSAAIR-MLRVRKGTPVEWRQYL 271
CN +KG + L E M+L R P+ P + R ++R+ WR+YL
Sbjct: 162 DCNRKKGNQFLHELTEMKLQREPR----------PFSLHTSRHIMRMIGSADPSWRRYL 210
>gi|407976851|ref|ZP_11157747.1| HNH endonuclease [Nitratireductor indicus C115]
gi|407427750|gb|EKF40438.1| HNH endonuclease [Nitratireductor indicus C115]
Length = 185
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F+++ +++ Y+Q ++SP+ + +P+V+ ++ VK R
Sbjct: 22 LSYYPLSLWSWQDAIKAVFLDRVNIVAEYEQQVSSPSFTMRLPSVISLK---TYVKPSRY 78
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC ++E+LT DHV+P GG WEN+VAAC CN +KG
Sbjct: 79 PA-FTRFNVFLRDRFQCQYCGTKEDLTFDHVIPRRCGGLTSWENVVAACSPCNLKKGGMM 137
Query: 225 LEEANMQLSRVPKAPKDYDI 244
A M + P P D+
Sbjct: 138 PARAKMWPHQKPYRPTVQDL 157
>gi|404258826|ref|ZP_10962143.1| hypothetical protein GONAM_16_00520 [Gordonia namibiensis NBRC
108229]
gi|403402606|dbj|GAC00553.1| hypothetical protein GONAM_16_00520 [Gordonia namibiensis NBRC
108229]
Length = 199
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 84/149 (56%), Gaps = 15/149 (10%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFY-------IPAVLR 151
R L+L+ +Y P++ V +RA+ L +AD++ + D++ G+F+ +P V+R
Sbjct: 33 RVLLLNATYEPLSAVTIRRAVVLILRGRADMV-HADES----GGAFHSAATEVPVPTVIR 87
Query: 152 VRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVA 211
+R+ ++V R + ++R LM+RD F C YC + TIDHVVP SRGG WEN VA
Sbjct: 88 LRNYVRVPYRATVP--MTRAALMHRDRFRCGYCG-KPATTIDHVVPRSRGGAHNWENCVA 144
Query: 212 ACFKCNSRKGKKTLEEANMQLSRVPKAPK 240
C CN RK + L E L P APK
Sbjct: 145 CCTSCNHRKADRLLSELGWTLRTRPVAPK 173
>gi|88855701|ref|ZP_01130364.1| hypothetical protein A20C1_06371 [marine actinobacterium PHSC20C1]
gi|88815025|gb|EAR24884.1| hypothetical protein A20C1_06371 [marine actinobacterium PHSC20C1]
Length = 165
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 84/143 (58%), Gaps = 4/143 (2%)
Query: 98 FRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEY-YDQTINSPNGSFYIPAVLRVRHLL 156
R LVL+ Y P+ VV +KRAI L +KA ++ + + +GS+ P+V+ +R+ +
Sbjct: 1 MRTLVLNAGYEPLAVVSFKRAIVLVLNQKATIIAADSEHPVWGSSGSWDRPSVIILRNYV 60
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
++ RR+ +SR+ ++ RD C YC N TIDHV+P SRGG+ WENLVA C +C
Sbjct: 61 RIPSTRRLP--VSRRGVLRRDGHRCGYCGGSAN-TIDHVLPRSRGGQDSWENLVACCLRC 117
Query: 217 NSRKGKKTLEEANMQLSRVPKAP 239
N+ K +T E +L P+ P
Sbjct: 118 NNVKSNRTPAEMKWRLLVKPRPP 140
>gi|317508586|ref|ZP_07966247.1| HNH endonuclease [Segniliparus rugosus ATCC BAA-974]
gi|316253130|gb|EFV12539.1| HNH endonuclease [Segniliparus rugosus ATCC BAA-974]
Length = 166
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 88/167 (52%), Gaps = 15/167 (8%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+ + P+N++ +RA+ L + ++A+++E + S +P+V+R+ +++ R +
Sbjct: 1 MGFEPLNIIPHRRAVVLVYSDRAELVEPTNLLARSERAELQVPSVIRLSRYVRIPYRATV 60
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
L+R ++ RD C YC + TIDHVVP SRGG+ W N+VAAC KCN +KG +
Sbjct: 61 P--LTRTAVVARDKHRCVYCGGKPE-TIDHVVPRSRGGQHVWTNVVAACQKCNHKKGNRL 117
Query: 225 LEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
L E L P APK A+P V P WR+YL
Sbjct: 118 LSELGWTLRDAPSAPKG----AVPRF--------VSGEHPSAWRRYL 152
>gi|218440993|ref|YP_002379322.1| HNH endonuclease [Cyanothece sp. PCC 7424]
gi|218173721|gb|ACK72454.1| HNH endonuclease [Cyanothece sp. PCC 7424]
Length = 169
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 81/148 (54%), Gaps = 5/148 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKA---DVLEYYDQTINSPNGSFYIPAVLRVRHLLQ 157
+V +Y P++ V +RA+ L KA DVL I SPN +P ++R L
Sbjct: 13 VVFSRNYLPISRVNIRRAVILLVTGKAEPIDVLSEAIWEIRSPNLVVQVPP--QIRLTLN 70
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
R ++R+ ++ RD CQYC S+ LT+DH++P S+GG+ W+N+V AC CN
Sbjct: 71 SGDRLWKTPPVNRREVLRRDKHQCQYCGSKHKLTLDHILPRSKGGKHTWDNVVIACESCN 130
Query: 218 SRKGKKTLEEANMQLSRVPKAPKDYDIL 245
SRKG +T EA M L PKAP IL
Sbjct: 131 SRKGDRTPSEAGMILKTSPKAPIHPTIL 158
>gi|379734794|ref|YP_005328300.1| Restriction endonuclease [Blastococcus saxobsidens DD2]
gi|378782601|emb|CCG02267.1| Restriction endonuclease [Blastococcus saxobsidens DD2]
Length = 175
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 90/171 (52%), Gaps = 14/171 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
L+L+ +Y P+ VV +RAI L EKA+ ++ + + + S +P V+R+ ++V
Sbjct: 11 LLLNATYEPLCVVSSRRAIVLVLAEKAESVDVTAELVRAATLSVPVPVVVRLTRYVRVPY 70
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
+ LSR+ + RD TC YC +IDHVVP SRGG W+N+VAAC +CN K
Sbjct: 71 PASVP--LSRRAVFTRDGQTCVYCGGSAT-SIDHVVPRSRGGTHTWDNVVAACRRCNHTK 127
Query: 221 GKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
++L E +L P P + AA R+L R P WR++L
Sbjct: 128 ADRSLAELGWKLPHPPSTP----------SGAAWRLLGHRTVDP-RWREWL 167
>gi|291450626|ref|ZP_06590016.1| endonuclease [Streptomyces albus J1074]
gi|359144462|ref|ZP_09178415.1| endonuclease [Streptomyces sp. S4]
gi|421741738|ref|ZP_16179918.1| restriction endonuclease [Streptomyces sp. SM8]
gi|291353575|gb|EFE80477.1| endonuclease [Streptomyces albus J1074]
gi|406689849|gb|EKC93690.1| restriction endonuclease [Streptomyces sp. SM8]
Length = 168
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 81/150 (54%), Gaps = 4/150 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADV-LEYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ S+ P++ V W RA+ L +KA V + + DQ + + +P V+R+ ++V
Sbjct: 5 LVLNASFEPLSTVTWNRAVVLVLQDKAVVEMVHPDQRVRAALVDIPVPRVIRLCRYVRVP 64
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
RRR SR+ ++ RD C YC R T+DHVVP S+GG W N VA C N R
Sbjct: 65 FRRRAP--WSRRGVLVRDQHRCAYCGGR-GTTVDHVVPRSKGGADSWLNTVACCAADNHR 121
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPL 249
K +T EEA M L R P P D + + L
Sbjct: 122 KANRTPEEAGMPLLRQPFEPTPSDAMLLAL 151
>gi|298246113|ref|ZP_06969919.1| HNH endonuclease [Ktedonobacter racemifer DSM 44963]
gi|297553594|gb|EFH87459.1| HNH endonuclease [Ktedonobacter racemifer DSM 44963]
Length = 181
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 84/143 (58%), Gaps = 9/143 (6%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKA-----DVLEYYDQTINSPNGSFYIPAVLRVRHL 155
LVL+ S +P++V+ +R I L +K +V +++IN+ P ++ L
Sbjct: 4 LVLNSSLQPLSVIPERRLIVLLSKQKVTFVDENVRALIEESINARRLDLERPVIV---QL 60
Query: 156 LQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACF 214
L V+ R+ +R N++ RD+ TCQYC R LT+DH++P SRGG+ WENLVA C
Sbjct: 61 LANVRVPRMALQPTRSNILLRDDDTCQYCGKRTRELTLDHILPRSRGGQSTWENLVACCR 120
Query: 215 KCNSRKGKKTLEEANMQLSRVPK 237
CN +KG + L++ANM L R P+
Sbjct: 121 ACNGKKGSRLLKDANMHLLRQPR 143
>gi|441514311|ref|ZP_20996131.1| hypothetical protein GOAMI_27_00390 [Gordonia amicalis NBRC 100051]
gi|441450871|dbj|GAC54092.1| hypothetical protein GOAMI_27_00390 [Gordonia amicalis NBRC 100051]
Length = 166
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 77/142 (54%), Gaps = 5/142 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQ--TINSPNGSFYIPAVLRVRHLLQV 158
L+L+ +Y P++ V +RA+ L +AD + + +SP + +P V+R+R ++V
Sbjct: 2 LLLNATYEPLSAVTVRRAVVLILRGRADTVHADESGGAFHSPATAVPVPTVIRLRTYVRV 61
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
R + L+R LM+RD F C YC R TIDHVVP SRGG WEN VA C CN
Sbjct: 62 PYRATVP--LTRSALMHRDRFRCGYCG-RPATTIDHVVPRSRGGAHNWENCVACCASCNH 118
Query: 219 RKGKKTLEEANMQLSRVPKAPK 240
K + L E L P AP+
Sbjct: 119 LKADRLLGELGWSLRTRPIAPR 140
>gi|258543026|ref|YP_003188459.1| endonuclease [Acetobacter pasteurianus IFO 3283-01]
gi|384042948|ref|YP_005481692.1| endonuclease [Acetobacter pasteurianus IFO 3283-12]
gi|384051465|ref|YP_005478528.1| endonuclease [Acetobacter pasteurianus IFO 3283-03]
gi|384054572|ref|YP_005487666.1| endonuclease [Acetobacter pasteurianus IFO 3283-07]
gi|384057807|ref|YP_005490474.1| endonuclease [Acetobacter pasteurianus IFO 3283-22]
gi|384060448|ref|YP_005499576.1| endonuclease [Acetobacter pasteurianus IFO 3283-26]
gi|384063740|ref|YP_005484382.1| endonuclease [Acetobacter pasteurianus IFO 3283-32]
gi|384119749|ref|YP_005502373.1| endonuclease [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256634104|dbj|BAI00080.1| endonuclease [Acetobacter pasteurianus IFO 3283-01]
gi|256637164|dbj|BAI03133.1| endonuclease [Acetobacter pasteurianus IFO 3283-03]
gi|256640216|dbj|BAI06178.1| endonuclease [Acetobacter pasteurianus IFO 3283-07]
gi|256643273|dbj|BAI09228.1| endonuclease [Acetobacter pasteurianus IFO 3283-22]
gi|256646328|dbj|BAI12276.1| endonuclease [Acetobacter pasteurianus IFO 3283-26]
gi|256649381|dbj|BAI15322.1| endonuclease [Acetobacter pasteurianus IFO 3283-32]
gi|256652367|dbj|BAI18301.1| endonuclease [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256655425|dbj|BAI21352.1| endonuclease [Acetobacter pasteurianus IFO 3283-12]
Length = 187
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 12/155 (7%)
Query: 98 FRGLVLD-----ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRV 152
F LVL+ +SY P+++ W+ AI ++++ VL Y+ ++SP+ + +P+V+ +
Sbjct: 9 FPALVLNADFRPLSYYPLSLWAWQDAIKAVWLDRVSVLSEYETEVHSPHHTIRLPSVIAL 68
Query: 153 RHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENL 209
+ + + K +R N+ RDNF+CQYC R + LT DHV+P +GG+ WEN+
Sbjct: 69 KDYIPAAR----KPAFTRFNVFLRDNFSCQYCGERHPTQELTFDHVIPRCKGGKTSWENI 124
Query: 210 VAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDI 244
V AC CN RKG M P+ P + +
Sbjct: 125 VTACGCCNLRKGSHLPHVIGMLPRHRPERPSSWQL 159
>gi|329115633|ref|ZP_08244355.1| HNH Endonuclease [Acetobacter pomorum DM001]
gi|326695061|gb|EGE46780.1| HNH Endonuclease [Acetobacter pomorum DM001]
Length = 187
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 12/155 (7%)
Query: 98 FRGLVLD-----ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRV 152
F LVL+ +SY P+++ W+ AI ++++ VL Y+ ++SP+ + +P+V+ +
Sbjct: 9 FPALVLNADFRPLSYYPLSLWAWQDAIKAVWLDRVSVLSEYETEVHSPHHTIRLPSVIAL 68
Query: 153 RHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENL 209
+ + + K +R N+ RDNF+CQYC R + LT DHV+P +GG+ WEN+
Sbjct: 69 KDYIPAAR----KPAFTRFNVFLRDNFSCQYCGERHPTQELTFDHVIPRCKGGKTSWENI 124
Query: 210 VAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDI 244
V AC CN RKG M P+ P + +
Sbjct: 125 VTACGCCNLRKGSHLPHVIGMLPRHRPERPSSWQL 159
>gi|428212589|ref|YP_007085733.1| restriction endonuclease [Oscillatoria acuminata PCC 6304]
gi|428000970|gb|AFY81813.1| restriction endonuclease [Oscillatoria acuminata PCC 6304]
Length = 182
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 82/155 (52%), Gaps = 20/155 (12%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT--------------INSPNGSFYI 146
+V +Y P++ V KRAI L KA+ LE D + + SP+ +
Sbjct: 13 VVFSKNYLPISRVNIKRAIVLLIAGKAEPLELSDGSNSYDFDLETPQRYEVRSPSQVVMV 72
Query: 147 PAVLRVRHLLQVVKRRRI--KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEW 204
P +R L + RI ++R+ ++ RD+ CQYC S ++LT+DHV+P SRGG
Sbjct: 73 PPHIR----LTITGTERIWKVPPVNRREVLKRDHHACQYCGSTKHLTLDHVLPKSRGGSH 128
Query: 205 KWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
W+N+V AC CNSRKG +T EA M L KAP
Sbjct: 129 SWDNVVTACMSCNSRKGDRTPMEAGMSLKTKLKAP 163
>gi|336319625|ref|YP_004599593.1| HNH endonuclease [[Cellvibrio] gilvus ATCC 13127]
gi|336103206|gb|AEI11025.1| HNH endonuclease [[Cellvibrio] gilvus ATCC 13127]
Length = 168
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 85/142 (59%), Gaps = 6/142 (4%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L ++KA V + + ++S + P+V+R++ ++V
Sbjct: 5 LVLNASYEPLCVVPVRRAVLLLLLDKAVVEQGSEALLHSERLTLVAPSVVRLQRYVRVPH 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R R ++R+ ++ RD C YCS R + TIDHVVP SR G WEN+VAAC +CN RK
Sbjct: 65 RTRAA--ITRRAVLARDGERCAYCSGRAD-TIDHVVPRSRRGPHAWENVVAACARCNHRK 121
Query: 221 GKKTLEEANMQLS---RVPKAP 239
L E +L RVP+AP
Sbjct: 122 ADHLLSELGWELGFTPRVPRAP 143
>gi|254477282|ref|ZP_05090668.1| restriction endonuclease [Ruegeria sp. R11]
gi|214031525|gb|EEB72360.1| restriction endonuclease [Ruegeria sp. R11]
Length = 188
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 93/183 (50%), Gaps = 19/183 (10%)
Query: 98 FRGLVLD-----ISYRPVNVVCWKRAICLEFMEKA-DVLEYYDQTINSPNGSFYIPAVLR 151
R L+L+ +S+ P++V W+ A E+ V Y D ++S SF +PAV+
Sbjct: 8 LRTLILNADMQPLSWAPLSVCNWQDAFVAVHQERVIQVKTYEDVEVHSATQSFEVPAVVA 67
Query: 152 VRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWEN 208
++ R+R K +R N+ RD F CQYC R + LT DHV+P SRGGE W N
Sbjct: 68 LKRY-----RKRKKVAFTRYNVFLRDEFCCQYCGKRFPAKELTFDHVIPRSRGGESSWTN 122
Query: 209 LVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWR 268
+VA C N RKG T ++ ++L R P AP ++ L + A R+ R + W
Sbjct: 123 IVACCSADNLRKGNLTPQQVGLKLRRKPYAPSPHE-----LDNIARRLPRPKPELHQTWM 177
Query: 269 QYL 271
+L
Sbjct: 178 DFL 180
>gi|300788655|ref|YP_003768946.1| HNH endonuclease [Amycolatopsis mediterranei U32]
gi|384152114|ref|YP_005534930.1| HNH endonuclease [Amycolatopsis mediterranei S699]
gi|399540536|ref|YP_006553198.1| HNH endonuclease [Amycolatopsis mediterranei S699]
gi|299798169|gb|ADJ48544.1| HNH endonuclease [Amycolatopsis mediterranei U32]
gi|340530268|gb|AEK45473.1| HNH endonuclease [Amycolatopsis mediterranei S699]
gi|398321306|gb|AFO80253.1| HNH endonuclease [Amycolatopsis mediterranei S699]
Length = 165
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 80/141 (56%), Gaps = 5/141 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTI--NSPNGSFYIPAVLRVRHLLQV 158
L+L+ ++ P+ + +RA+ L KA+V+ I +S S +P+V+R+ ++V
Sbjct: 2 LLLNATFEPLTALPLRRAVVLVMCGKAEVVHGDPGGIELHSAKVSLPVPSVIRLSTYVRV 61
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
R ++ L+R LM+RD + C YC R TIDHV+P SRGG W N VA C KCN
Sbjct: 62 PYRAQVP--LTRAGLMHRDRYRCAYCGGRAE-TIDHVIPRSRGGPHSWTNCVACCAKCNH 118
Query: 219 RKGKKTLEEANMQLSRVPKAP 239
RK + L E +L VP+AP
Sbjct: 119 RKADRLLSEIGWRLRIVPRAP 139
>gi|449018021|dbj|BAM81423.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 287
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 80/157 (50%), Gaps = 12/157 (7%)
Query: 92 FDELACFRGLVLDISYRPVNVV-----CWKRAICLEFMEKADVLEYYDQTINSPNGSFYI 146
D A LVL+ YRP++ + W+ AI + V+ YD+ I +P+ S +
Sbjct: 99 LDNEAHLPALVLNADYRPLSYLPLSLWSWQEAIKASLSGRVRVVAEYDKIIRAPSMSMRL 158
Query: 147 PAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGE 203
PAV+ ++ Q R +R N+ RD+F CQYC + +LT DHVVP SRGG+
Sbjct: 159 PAVVCLKRFQQSTVSR---AAFTRFNVFLRDSFQCQYCGTSGPITDLTFDHVVPRSRGGK 215
Query: 204 WKWENLVAACFKCNSRKGKKTLEE-ANMQLSRVPKAP 239
W N+V C CN RKG K E NM L R P P
Sbjct: 216 TCWRNVVTCCTACNRRKGGKLPHEIPNMTLQRQPYVP 252
>gi|378717445|ref|YP_005282334.1| putative HNH endonuclease [Gordonia polyisoprenivorans VH2]
gi|375752148|gb|AFA72968.1| putative HNH endonuclease [Gordonia polyisoprenivorans VH2]
Length = 216
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 78/144 (54%), Gaps = 5/144 (3%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYY--DQTINSPNGSFYIPAVLRVRHLL 156
R L+L+ +Y P+ + +RAI L E+ADV+ ++S + IP+V+R+R +
Sbjct: 50 RVLLLNATYEPLTAISLRRAIVLVLRERADVVHAVAPGMAVHSAARTVPIPSVIRLRTYV 109
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R ++R LM+RD C YC ++ TIDHV+P SRGG WEN VA C C
Sbjct: 110 RVPYR--AVTPMTRAALMHRDRSRCGYCGAKAT-TIDHVLPRSRGGGHSWENCVACCASC 166
Query: 217 NSRKGKKTLEEANMQLSRVPKAPK 240
N RK + L E L APK
Sbjct: 167 NHRKADRLLSELGWTLHTPLTAPK 190
>gi|359771914|ref|ZP_09275356.1| hypothetical protein GOEFS_046_00900 [Gordonia effusa NBRC 100432]
gi|359311028|dbj|GAB18134.1| hypothetical protein GOEFS_046_00900 [Gordonia effusa NBRC 100432]
Length = 182
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 84/143 (58%), Gaps = 6/143 (4%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVL--EY-YDQTINSPNGSFYIPAVLRVRHLLQ 157
L+L+ +Y P+ VV +RA+ L E+A+++ +Y D ++S S P+V+R+ ++
Sbjct: 17 LLLNATYEPLTVVTIRRAVVLVLRERAEIIHGDYGADGGLHSAEVSLPTPSVIRLTSYVR 76
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
V R I ++R LMYRD+ C YC ++ TIDHV+P SRGG W+N VA C CN
Sbjct: 77 VPYRAVIP--MTRAALMYRDSSRCGYCGAKAT-TIDHVIPRSRGGRNTWDNCVACCSGCN 133
Query: 218 SRKGKKTLEEANMQLSRVPKAPK 240
RK + L E +L+ P AP+
Sbjct: 134 HRKADRLLSELGWRLAVQPVAPR 156
>gi|452964360|gb|EME69402.1| HNH endonuclease family protein [Magnetospirillum sp. SO-1]
Length = 186
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 84/162 (51%), Gaps = 11/162 (6%)
Query: 86 YDSDEEFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFY 145
+DS A FR L SY P+++ W+ +I ++ V+ YD+ I+SP+ S
Sbjct: 4 FDSHPALVLNADFRPL----SYFPLSLWSWQDSIKAVVSDRVAVVSQYDRVIHSPSQSLR 59
Query: 146 IPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGG 202
+P+V+ ++ + +R +R N+ RD F+CQYC +LT DHV+P SRGG
Sbjct: 60 LPSVIALKEFIPAARR----PAFTRFNVFLRDRFSCQYCGEWFPTHDLTFDHVLPRSRGG 115
Query: 203 EWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDI 244
W+N+V AC CN RKG + E + L P P + +
Sbjct: 116 RTTWDNVVTACAPCNLRKGDRLHSEVGLALLSRPGPPSVHQL 157
>gi|343927547|ref|ZP_08767017.1| hypothetical protein GOALK_095_00270 [Gordonia alkanivorans NBRC
16433]
gi|343762535|dbj|GAA13943.1| hypothetical protein GOALK_095_00270 [Gordonia alkanivorans NBRC
16433]
Length = 188
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 80/144 (55%), Gaps = 5/144 (3%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQ--TINSPNGSFYIPAVLRVRHLL 156
R L+L+ +Y P++ V +RA+ L +AD++ + +S + +P V+R+R+ +
Sbjct: 22 RVLLLNATYEPLSAVTIRRAVVLILRGRADMVHADESGGAFHSAATAVPVPTVIRLRNYV 81
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R + ++R LM+RD F C YC + TIDHVVP SRGG WEN VA C C
Sbjct: 82 RVPYRASVP--MTRAALMHRDRFRCGYCR-KPATTIDHVVPRSRGGAHNWENCVACCASC 138
Query: 217 NSRKGKKTLEEANMQLSRVPKAPK 240
N RK + + E L P APK
Sbjct: 139 NHRKADRLITELGWTLRNRPVAPK 162
>gi|434399861|ref|YP_007133865.1| HNH endonuclease [Stanieria cyanosphaera PCC 7437]
gi|428270958|gb|AFZ36899.1| HNH endonuclease [Stanieria cyanosphaera PCC 7437]
Length = 186
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 83/160 (51%), Gaps = 24/160 (15%)
Query: 101 LVLDISYRPVNVVCWKRAICL------------------EFMEKADVLEYYDQTI---NS 139
+V +Y P+N + KRAI L F KA+ ++ I S
Sbjct: 9 IVFSKNYLPLNQINLKRAITLLVTGGRYSAVKQPSLLPLVFPSKAEPIDLVTDVIWEIRS 68
Query: 140 PNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPAS 199
PN +PA +R L +R ++SRK + RD + CQYCS++++LTIDH++P S
Sbjct: 69 PNLIVQVPAYIR---LYNAPERAWRVPSVSRKEIFRRDRYQCQYCSNKKDLTIDHIIPRS 125
Query: 200 RGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
+GG W+NLV AC CNSRKG T E+ M+L PK P
Sbjct: 126 KGGRNTWDNLVTACTACNSRKGDCTPEQVGMKLKTKPKPP 165
>gi|294084720|ref|YP_003551478.1| HNH endonuclease [Candidatus Puniceispirillum marinum IMCC1322]
gi|292664293|gb|ADE39394.1| HNH endonuclease family protein [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 188
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 82/153 (53%), Gaps = 12/153 (7%)
Query: 100 GLVLDISYRPVN-----VVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRH 154
LVL+ +RP+N + W+ A+ +E+ ++ YDQ I+SP+ +P+V+ ++
Sbjct: 9 ALVLNADFRPLNYFPLSLWSWQDAVKAVCLERVTIISEYDQQISSPSMQINLPSVIALKE 68
Query: 155 LLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSS---RENLTIDHVVPASRGGEWKWENLVA 211
+ ++ +R N+ RD F+CQYC + LT DHV+P S+GG W N+VA
Sbjct: 69 YVPQMRNPA----FTRFNVFLRDRFSCQYCGTGLPASELTFDHVIPRSKGGRTTWANVVA 124
Query: 212 ACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDI 244
AC CN RK K ++ NM P AP + +
Sbjct: 125 ACSPCNLRKANKLPKQCNMYPLSAPTAPNVWQL 157
>gi|451336575|ref|ZP_21907130.1| HNH endonuclease family protein [Amycolatopsis azurea DSM 43854]
gi|449420636|gb|EMD26096.1| HNH endonuclease family protein [Amycolatopsis azurea DSM 43854]
Length = 162
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 80/144 (55%), Gaps = 15/144 (10%)
Query: 103 LDISYRPVNVVCWKRAICLEFMEKADV-------LEYYDQTINSPNGSFYIPAVLRVRHL 155
++ ++ P+ + +RA+ L KA+V LE + T++ P +P+V+R+
Sbjct: 1 MNATFEPLTALPLRRAVVLVMCGKAEVVHGDPAGLELHAATVSLP-----VPSVIRLSTY 55
Query: 156 LQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFK 215
++V R ++ L+R LM+RD + C YC R TIDHVVP SRGG W N VA C K
Sbjct: 56 VRVPYRAQVP--LTRAGLMHRDRYRCAYCGGRAE-TIDHVVPRSRGGPHSWTNCVACCAK 112
Query: 216 CNSRKGKKTLEEANMQLSRVPKAP 239
CN RK K L E +L VP+AP
Sbjct: 113 CNHRKADKLLSEIGWRLRVVPRAP 136
>gi|381206040|ref|ZP_09913111.1| HNH endonuclease family protein [SAR324 cluster bacterium JCVI-SC
AAA005]
Length = 183
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 93/168 (55%), Gaps = 18/168 (10%)
Query: 107 YRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKN 166
+ P++VV WK I ++ K DVLE+Y SP+ IP+V+ +L R R++
Sbjct: 16 WNPLSVVSWKWGIKSYYLGKIDVLEWYAHECRSPSTRIKIPSVV----ILHEYHRARLRV 71
Query: 167 NLSRKNLMYRDNFTCQYCSS---RENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKK 223
N +++N+ RD + CQYC LT DHV+P SRGG+ WEN+V C CN RKG++
Sbjct: 72 NFTKRNIFIRDLYRCQYCGKAFPMIELTCDHVLPRSRGGQNSWENIVTCCRGCNRRKGQR 131
Query: 224 TLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
T +++ R P+ ++++ A++ +++ P W+QYL
Sbjct: 132 T----DIRPLREPRELDYWEMV------HAVKQMQITLPDP-RWQQYL 168
>gi|444306451|ref|ZP_21142216.1| restriction endonuclease [Arthrobacter sp. SJCon]
gi|443481243|gb|ELT44173.1| restriction endonuclease [Arthrobacter sp. SJCon]
Length = 166
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 76/143 (53%), Gaps = 3/143 (2%)
Query: 98 FRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQ 157
R LVL+ Y P+ VV ++RA+ L KA V+ D + P P+V+ + ++
Sbjct: 1 MRTLVLNAGYEPLAVVTFRRALVLVLTGKASVVAEGDDPVVGPQEILGRPSVILLNRYIR 60
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
R +SR+ ++ RD C YC + TIDHV P SRGG WENLVAAC +CN
Sbjct: 61 --PRYNQATAVSRRGVLRRDGHKCAYCGKAAH-TIDHVHPKSRGGADSWENLVAACLRCN 117
Query: 218 SRKGKKTLEEANMQLSRVPKAPK 240
+ KG T E +L VP+ P+
Sbjct: 118 NAKGDHTPAEMGWKLRFVPEPPR 140
>gi|359767941|ref|ZP_09271721.1| hypothetical protein GOPIP_070_00330 [Gordonia polyisoprenivorans
NBRC 16320]
gi|359314518|dbj|GAB24554.1| hypothetical protein GOPIP_070_00330 [Gordonia polyisoprenivorans
NBRC 16320]
Length = 212
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 78/144 (54%), Gaps = 5/144 (3%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYY--DQTINSPNGSFYIPAVLRVRHLL 156
R L+L+ +Y P+ + +RAI L E+ADV+ ++S + IP+V+R+R +
Sbjct: 46 RVLLLNATYEPLTAISLRRAIILVLRERADVVHAAAPGMAVHSAARTVPIPSVIRLRTYV 105
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+V R ++R LM+RD C YC ++ TIDHV+P SRGG WEN VA C C
Sbjct: 106 RVPYR--AVTPMTRAALMHRDRSRCGYCGAKAT-TIDHVLPRSRGGGHSWENCVACCASC 162
Query: 217 NSRKGKKTLEEANMQLSRVPKAPK 240
N RK + L E L APK
Sbjct: 163 NHRKADRLLSELGWTLHTPLTAPK 186
>gi|404420148|ref|ZP_11001894.1| endonuclease [Mycobacterium fortuitum subsp. fortuitum DSM 46621]
gi|403660369|gb|EJZ14939.1| endonuclease [Mycobacterium fortuitum subsp. fortuitum DSM 46621]
Length = 176
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 80/149 (53%), Gaps = 5/149 (3%)
Query: 102 VLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT--INSPNGSFYIPAVLRVRHLLQVV 159
V + YR + V W+ AI L V+E + I+SP+ +PA + + + +
Sbjct: 16 VYNADYRVLTQVTWQEAIRLLLRGSVYVIERHSPAVHIHSPSTVIELPASVALYEYVHMP 75
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R + R ++ RDN+TC YC R + T+DHVVP SRGG+ W NLVAAC CN R
Sbjct: 76 YR--AGHRAGRAGVLERDNYTCAYCGGRGD-TLDHVVPESRGGQNTWLNLVAACAPCNGR 132
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIP 248
KG +T EEA M+L P P+ + +P
Sbjct: 133 KGNRTPEEAGMRLFWEPYEPRARERYRVP 161
>gi|434388165|ref|YP_007098776.1| restriction endonuclease [Chamaesiphon minutus PCC 6605]
gi|428019155|gb|AFY95249.1| restriction endonuclease [Chamaesiphon minutus PCC 6605]
Length = 187
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 7/166 (4%)
Query: 78 GISGESEEYDSDEEFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQ-- 135
GIS +S++ D + + +V +Y P+ + +RAI L +A+ L+ D
Sbjct: 7 GIS-DSKQADLRSKIPSVLNNSVVVFSTNYLPMARINIRRAISLLLSGRAEPLDLQDTKL 65
Query: 136 --TINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTID 193
++SP+ + +P +R++ +R ++SR+ L+ RD CQYC S + LTID
Sbjct: 66 VWVLHSPSVAVEVPHHIRLK--TTTAERLWKLPSVSRRELLRRDGHRCQYCGSAKQLTID 123
Query: 194 HVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
HV+P S+GG W+N+ AC CN +KG K L E +M L PKAP
Sbjct: 124 HVIPRSKGGTHTWDNVTIACETCNHKKGDKYLNETSMVLRSKPKAP 169
>gi|418057127|ref|ZP_12695174.1| HNH endonuclease [Hyphomicrobium denitrificans 1NES1]
gi|353204767|gb|EHB70180.1| HNH endonuclease [Hyphomicrobium denitrificans 1NES1]
Length = 189
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ + F+++ +++ Y++ + SP+ +P+V+ L+ + +
Sbjct: 26 LSYYPLSLWSWQDTVKAVFLDRVNIVSEYERYVRSPSFELKLPSVVS----LKTYVKPAL 81
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F+CQYC R +LT DH++P SRGG+ +W+N+V AC CN +KG
Sbjct: 82 YPAFTRFNVFLRDRFSCQYCGDRSDLTFDHLIPRSRGGQTRWDNVVTACAPCNLKKGGMM 141
Query: 225 LEEANMQLSRVPKAPKDYDI 244
+ A M + P P +++
Sbjct: 142 PKVAGMFPAHEPYRPTVFEL 161
>gi|427427110|ref|ZP_18917155.1| HNH endonuclease family protein [Caenispirillum salinarum AK4]
gi|425883811|gb|EKV32486.1| HNH endonuclease family protein [Caenispirillum salinarum AK4]
Length = 177
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 78/147 (53%), Gaps = 8/147 (5%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVL-EYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRR 163
+SY P+++ W+ AI F+ + V+ EY D I+SP +P+V+ ++ +R
Sbjct: 10 LSYYPLSLWPWQEAIKAVFLGRVSVVHEYDDAIIHSPRMELKLPSVIALKEYAPTHRR-- 67
Query: 164 IKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
+R N+ RD FTCQYC R +LT DHV+P RGG W N+V AC CN RK
Sbjct: 68 --PAFTRFNVFLRDRFTCQYCGRRFPTHDLTFDHVIPRCRGGRTNWLNVVTACGACNLRK 125
Query: 221 GKKTLEEANMQLSRVPKAPKDYDILAI 247
G K ++ M L R P P + + I
Sbjct: 126 GSKLPKDCGMPLIREPFRPNAFQLQDI 152
>gi|420915524|ref|ZP_15378829.1| hypothetical protein MA6G0125S_1613 [Mycobacterium abscessus
6G-0125-S]
gi|421034041|ref|ZP_15497063.1| hypothetical protein MA3A0930S_1298 [Mycobacterium abscessus
3A-0930-S]
gi|392123208|gb|EIU48970.1| hypothetical protein MA6G0125S_1613 [Mycobacterium abscessus
6G-0125-S]
gi|392230582|gb|EIV56092.1| hypothetical protein MA3A0930S_1298 [Mycobacterium abscessus
3A-0930-S]
Length = 151
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 71/127 (55%), Gaps = 5/127 (3%)
Query: 116 KRAICLEFMEKADVL--EYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNL 173
+RA+ + KADV+ + I+S S +P+V+R+R ++V R R+ ++R L
Sbjct: 2 RRAVIMLLCGKADVVHDDPAAPIIHSATTSVAVPSVIRLRTFVRVPYRARVP--MTRAAL 59
Query: 174 MYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLS 233
M+RD F C YC R + TIDHV+P S+GG WEN VA C CN RK + L E L
Sbjct: 60 MHRDRFRCAYCGGRAD-TIDHVIPRSKGGAHSWENCVACCSSCNHRKADRLLAELGWSLH 118
Query: 234 RVPKAPK 240
P PK
Sbjct: 119 TTPMPPK 125
>gi|421848877|ref|ZP_16281863.1| endonuclease [Acetobacter pasteurianus NBRC 101655]
gi|371460397|dbj|GAB27066.1| endonuclease [Acetobacter pasteurianus NBRC 101655]
Length = 176
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 7/143 (4%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI ++++ VL Y+ ++SP+ + +P+V+ ++ + +
Sbjct: 10 LSYYPLSLWAWQDAIKAVWLDRVSVLSEYETEVHSPHHTIRLPSVIALKDYIPAAR---- 65
Query: 165 KNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
K +R N+ RDNF+CQYC R + LT DHV+P +GG+ WEN+V AC CN RKG
Sbjct: 66 KPAFTRFNVFLRDNFSCQYCGERHPTQELTFDHVIPRCKGGKTSWENIVTACGCCNLRKG 125
Query: 222 KKTLEEANMQLSRVPKAPKDYDI 244
M P+ P + +
Sbjct: 126 SHLPHVIGMLPRHRPERPSSWQL 148
>gi|163839261|ref|YP_001623666.1| HNH endonuclease [Renibacterium salmoninarum ATCC 33209]
gi|162952737|gb|ABY22252.1| HNH endonuclease family protein [Renibacterium salmoninarum ATCC
33209]
Length = 165
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 77/145 (53%), Gaps = 3/145 (2%)
Query: 98 FRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQ 157
R LVL+ Y P+ VV ++RA+ L KA VL D + P P+V+ + ++
Sbjct: 1 MRTLVLNAGYEPLAVVTFRRALILVLAGKASVLAEGDDPVVGPQEILSRPSVILLNRYIR 60
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
+ R ++ +SR+ ++ RD C YC + TIDH+ P SRGG WENLVA C +CN
Sbjct: 61 LPYDR--ESPVSRRGVLRRDEHHCAYCG-KSGSTIDHIQPRSRGGADSWENLVACCLRCN 117
Query: 218 SRKGKKTLEEANMQLSRVPKAPKDY 242
+ KG T E L PK P+ +
Sbjct: 118 NLKGDHTPSEMGWHLRVSPKPPRGW 142
>gi|421851907|ref|ZP_16284599.1| endonuclease [Acetobacter pasteurianus subsp. pasteurianus LMG 1262
= NBRC 106471]
gi|371479926|dbj|GAB29802.1| endonuclease [Acetobacter pasteurianus subsp. pasteurianus LMG 1262
= NBRC 106471]
Length = 176
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 7/143 (4%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI ++++ VL Y+ ++SP+ + +P+V+ ++ + +
Sbjct: 10 LSYYPLSLWAWQDAIKAVWLDRVSVLSEYETEVHSPHHTIRLPSVIALKDYIPAAR---- 65
Query: 165 KNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
K +R N+ RDNF+CQYC R + LT DHV+P +GG+ WEN+V AC CN RKG
Sbjct: 66 KPAFTRFNVFLRDNFSCQYCGERHPTQELTFDHVIPRCKGGKTSWENIVTACGCCNLRKG 125
Query: 222 KKTLEEANMQLSRVPKAPKDYDI 244
M P+ P + +
Sbjct: 126 SHLPHVIGMLPRHRPERPSSWQL 148
>gi|295394532|ref|ZP_06804755.1| arsenate reductase [Brevibacterium mcbrellneri ATCC 49030]
gi|294972711|gb|EFG48563.1| arsenate reductase [Brevibacterium mcbrellneri ATCC 49030]
Length = 173
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 79/143 (55%), Gaps = 3/143 (2%)
Query: 98 FRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQ 157
+ LVL+ Y P+++V ++RAI L KA VL I S + S P+V+ + +Q
Sbjct: 1 MKTLVLNAGYEPMSIVSFRRAIALVLAGKATVLASEGLLIRSAHVSIDQPSVILLNRYVQ 60
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
+ R LSR+ ++ RD C YC N T+DHV+P SRGG+ W NLVA C CN
Sbjct: 61 PPRGR--TTALSRRGVLRRDKHLCAYCGEGAN-TVDHVLPRSRGGQNTWTNLVACCRSCN 117
Query: 218 SRKGKKTLEEANMQLSRVPKAPK 240
+ KG +T +E +L P AP+
Sbjct: 118 NVKGNRTPDEMGWKLLFTPVAPQ 140
>gi|307153901|ref|YP_003889285.1| HNH endonuclease [Cyanothece sp. PCC 7822]
gi|306984129|gb|ADN16010.1| HNH endonuclease [Cyanothece sp. PCC 7822]
Length = 169
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 81/142 (57%), Gaps = 5/142 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTI---NSPNGSFYIPAVLRVRHLLQ 157
+V +Y P++ V +RA+ L KA+ ++ + I SPN +P ++R L
Sbjct: 13 VVFSKNYLPISRVNIRRAVILLVTGKAEPMDLLSEAIWEVRSPNLVVQVPH--QIRLTLN 70
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
R ++R+ ++ RD CQYC S+ LT+DHV+P S+GG+ W+N+V AC CN
Sbjct: 71 SGDRLWKIPPVNRREVLRRDKQQCQYCGSKHKLTLDHVIPRSKGGKHTWDNVVIACESCN 130
Query: 218 SRKGKKTLEEANMQLSRVPKAP 239
SRKG +T +EA M L PKAP
Sbjct: 131 SRKGDRTPQEAGMILKSNPKAP 152
>gi|83313413|ref|YP_423677.1| restriction endonuclease [Magnetospirillum magneticum AMB-1]
gi|82948254|dbj|BAE53118.1| Restriction endonuclease [Magnetospirillum magneticum AMB-1]
Length = 188
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 78/143 (54%), Gaps = 8/143 (5%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+S+ P++V W+ A+ ++ + YD + S + SF IP+V+ ++ RR
Sbjct: 21 LSWGPLSVWPWQDALVAVLKDRVHQVCAYDLEVRSASRSFRIPSVVALKDF-----HRRK 75
Query: 165 KNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
+ +R ++ RD F CQYC+ +LT DHVVP SRGG+ W+N+V C N RKG
Sbjct: 76 SVSFTRYHVFLRDGFRCQYCARVFDTRDLTFDHVVPRSRGGKTTWDNIVTCCAADNLRKG 135
Query: 222 KKTLEEANMQLSRVPKAPKDYDI 244
K+L EA M L R P P Y +
Sbjct: 136 AKSLREAGMHLLRRPFTPTPYQM 158
>gi|238060650|ref|ZP_04605359.1| HNH endonuclease [Micromonospora sp. ATCC 39149]
gi|237882461|gb|EEP71289.1| HNH endonuclease [Micromonospora sp. ATCC 39149]
Length = 180
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 76/141 (53%), Gaps = 3/141 (2%)
Query: 100 GLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ +Y P+ VV +RA L KA + + ++S + +P+V+R+ ++V
Sbjct: 12 ALVLNATYEPLCVVSVRRAAILVLSAKAVCVADGEGILHSARDALPVPSVVRLTRFVRVP 71
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R + LSR+ + RD + C YC TIDHV P SRGG WEN+VAAC +CN
Sbjct: 72 YRAHV--GLSRRAIFARDGWRCAYCRGPAE-TIDHVFPRSRGGRHAWENVVAACARCNHT 128
Query: 220 KGKKTLEEANMQLSRVPKAPK 240
KG KT E +L P PK
Sbjct: 129 KGDKTPAELGWRLHAPPAVPK 149
>gi|373251364|ref|ZP_09539482.1| HNH endonuclease [Nesterenkonia sp. F]
Length = 164
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 98 FRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQ 157
R LVL+ Y P++VV +RA L KA VL I SP + PAV+ + ++
Sbjct: 1 MRTLVLNAGYEPLSVVSSRRAAVLVMRGKASVLAEDGGPIVSPTTLWPRPAVILLHQYVR 60
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
VV+R + SR+ ++ RD C YCS R T+DHVVP SRGG+ WENLVA C CN
Sbjct: 61 VVRR--RPGSPSRRGILRRDQQRCAYCS-RPADTVDHVVPRSRGGDSSWENLVACCGPCN 117
Query: 218 SRKGKKTLEEANMQLSRVPKAPK 240
RKG +TL E L P AP+
Sbjct: 118 LRKGDRTLGELGWSLRVTPTAPR 140
>gi|325962258|ref|YP_004240164.1| restriction endonuclease [Arthrobacter phenanthrenivorans Sphe3]
gi|323468345|gb|ADX72030.1| restriction endonuclease [Arthrobacter phenanthrenivorans Sphe3]
Length = 166
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 75/142 (52%), Gaps = 3/142 (2%)
Query: 98 FRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQ 157
R LVL+ Y P+ V+ ++RA+ L KA V+ D + P P+V+ + ++
Sbjct: 1 MRTLVLNAGYEPLAVITFRRALVLVLTGKASVVAEGDDPVVGPQEILGRPSVILLNRYIR 60
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
R +SR+ ++ RD C YC + TIDHV P SRGG WENLVAAC +CN
Sbjct: 61 --PRYNQATAVSRRGVLRRDGHKCAYCGKAAH-TIDHVHPKSRGGADSWENLVAACLRCN 117
Query: 218 SRKGKKTLEEANMQLSRVPKAP 239
+ KG T E +L VP+ P
Sbjct: 118 NAKGDHTPAEMGWKLRFVPEPP 139
>gi|148256596|ref|YP_001241181.1| hypothetical protein BBta_5292 [Bradyrhizobium sp. BTAi1]
gi|146408769|gb|ABQ37275.1| hypothetical protein BBta_5292 [Bradyrhizobium sp. BTAi1]
Length = 178
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 81/145 (55%), Gaps = 12/145 (8%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P++V W+ AI E V+ YD+ + SP+ + +P+V+ +R + R +
Sbjct: 17 LSYFPLSVFSWEDAIKAVVSESHVVVAEYDRVVRSPSVTMRLPSVIALRDYV----RPAM 72
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRE---NLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
+ +R N+ RD FTCQYC R LT DHVVP + GGE W N+VAAC CN+RK
Sbjct: 73 RVPFTRFNVFLRDRFTCQYCGGRYLHGELTFDHVVPRADGGETSWTNIVAACSPCNARKD 132
Query: 222 KKTLEEANMQLSRVPKAPKDYDILA 246
++ L+ R P P ++++A
Sbjct: 133 RRHLKP-----RRPPFEPTRHELMA 152
>gi|392383290|ref|YP_005032487.1| putative HNH endonuclease [Azospirillum brasilense Sp245]
gi|356878255|emb|CCC99127.1| putative HNH endonuclease [Azospirillum brasilense Sp245]
Length = 187
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 75/143 (52%), Gaps = 7/143 (4%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ F+++ +++ YD+ + SP +P+V+ ++ + +R
Sbjct: 20 LSYFPLSLWSWQEAVKAVFLDRVNIISEYDRVVRSPTFEVKLPSVISLKEFIPATRR--- 76
Query: 165 KNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
+R N+ RD FTCQYC + LT DHV+P SRGG W+N+V +C CN KG
Sbjct: 77 -PAFTRFNVFLRDRFTCQYCGHHFPTQELTFDHVIPRSRGGRTTWDNVVTSCSACNLAKG 135
Query: 222 KKTLEEANMQLSRVPKAPKDYDI 244
+ M P P Y +
Sbjct: 136 NRLPHSCGMIPLSPPFQPSAYQL 158
>gi|108805565|ref|YP_645502.1| HNH endonuclease [Rubrobacter xylanophilus DSM 9941]
gi|108766808|gb|ABG05690.1| HNH endonuclease [Rubrobacter xylanophilus DSM 9941]
Length = 179
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 81/148 (54%), Gaps = 10/148 (6%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEY-YDQTINSPNGSFYIPAVLRVRHLLQVV 159
+ L+ SY PV +V KRAI L EKA+++E ++ S + P V+R+ +++
Sbjct: 1 MTLNASYEPVALVPVKRAIVLVVTEKAEIVEANLERRFRSEKAEYPYPLVIRLVKYVEIP 60
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSS-------RENLTIDHVVPASRGGEWKWENLVAA 212
RR++ +++ L RD + CQYC RE LT DHV P SRGG W+N+V A
Sbjct: 61 --RRLRRHVTNTILFARDGYRCQYCGRHKSELGRRECLTRDHVKPLSRGGGNSWDNVVTA 118
Query: 213 CFKCNSRKGKKTLEEANMQLSRVPKAPK 240
C +CN+RKG + E M PK P+
Sbjct: 119 CTRCNARKGDRLPMECGMYPRSTPKEPR 146
>gi|116669363|ref|YP_830296.1| HNH endonuclease [Arthrobacter sp. FB24]
gi|116609472|gb|ABK02196.1| HNH endonuclease [Arthrobacter sp. FB24]
Length = 166
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 74/142 (52%), Gaps = 3/142 (2%)
Query: 98 FRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQ 157
R LVL+ Y P+ VV ++RA+ L KA V+ D + P P+V+ + ++
Sbjct: 1 MRTLVLNAGYEPLAVVTFRRALVLVLTGKASVVAEGDDPVVGPQEILGRPSVILLNRYIR 60
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
R +SR+ ++ RD C YC + TIDHV P SRGG WENLVAAC +CN
Sbjct: 61 --PRYNTTTAVSRRGVLRRDAHRCAYCGKAAH-TIDHVHPKSRGGADSWENLVAACLRCN 117
Query: 218 SRKGKKTLEEANMQLSRVPKAP 239
+ KG T E +L VP P
Sbjct: 118 NVKGDHTPAEMGWKLRFVPAPP 139
>gi|365855866|ref|ZP_09395901.1| HNH endonuclease domain protein [Acetobacteraceae bacterium
AT-5844]
gi|363718726|gb|EHM02055.1| HNH endonuclease domain protein [Acetobacteraceae bacterium
AT-5844]
Length = 187
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 82/155 (52%), Gaps = 12/155 (7%)
Query: 98 FRGLVLD-----ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRV 152
F LVL+ +SY P+++ W+ A+ ++++ VL Y+ ++SPN + +P+V+ +
Sbjct: 9 FPALVLNADFRPLSYFPLSLWSWQDAVKAVYLDRVSVLSEYETEVHSPNHTIRLPSVIAL 68
Query: 153 RHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENL 209
+ + +R +R N+ RD F+C YC LT DHV+P SRGG W+N+
Sbjct: 69 KEYIPSARR----PAFTRFNVFLRDRFSCVYCGWEGPTHELTFDHVIPRSRGGRTSWDNV 124
Query: 210 VAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDI 244
V AC CN RKG K E M + P +++
Sbjct: 125 VTACGPCNLRKGSKLPREIKMFPREEARQPTSWEL 159
>gi|338741522|ref|YP_004678484.1| endonuclease [Hyphomicrobium sp. MC1]
gi|337762085|emb|CCB67920.1| putative endonuclease [Hyphomicrobium sp. MC1]
Length = 186
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 79/140 (56%), Gaps = 4/140 (2%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ + F+++ +++ Y++ + SP+ +P+V+ L+ + +
Sbjct: 23 LSYYPLSLWSWQDTVKAVFLDRVNIVSEYERYVRSPSFELKLPSVVS----LKTYVKPAL 78
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD F CQYC R +LT DH++P SRGG+ +W+N+V AC CN +KG
Sbjct: 79 YPAFTRFNVFLRDRFACQYCGDRNDLTFDHLIPRSRGGQTRWDNVVTACAPCNLKKGGLM 138
Query: 225 LEEANMQLSRVPKAPKDYDI 244
A M + P P +++
Sbjct: 139 PRAAGMFPAHEPYRPTVFEL 158
>gi|296128633|ref|YP_003635883.1| HNH endonuclease [Cellulomonas flavigena DSM 20109]
gi|296020448|gb|ADG73684.1| HNH endonuclease [Cellulomonas flavigena DSM 20109]
Length = 182
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 78/142 (54%), Gaps = 3/142 (2%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQV 158
R L+L+ S P+ +V RA+ L KA VLE + ++S P VL + + V
Sbjct: 22 RTLLLNASGDPLCIVTLHRAVVLVMTGKATVLESDGRVLHSSRFEMPAPVVLVLTRYVHV 81
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
RR + +R+ ++ RD+ C YC + T+DHV P SRGG +W N+VAAC +CN
Sbjct: 82 PHRRPVPP--TRRTVLQRDDHRCAYCGGGAD-TVDHVQPRSRGGRHEWGNVVAACRRCNH 138
Query: 219 RKGKKTLEEANMQLSRVPKAPK 240
RK +TL E +L P+AP+
Sbjct: 139 RKADRTLHELGWELPFRPRAPR 160
>gi|359408103|ref|ZP_09200575.1| restriction endonuclease [SAR116 cluster alpha proteobacterium
HIMB100]
gi|356676860|gb|EHI49209.1| restriction endonuclease [SAR116 cluster alpha proteobacterium
HIMB100]
Length = 192
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 84/143 (58%), Gaps = 7/143 (4%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ +I F+++ ++ Y++ ++SP+ + +P+V+ ++ + + + R
Sbjct: 19 LSYFPLSLWSWQDSIKAVFLDRVTIISEYEEMVSSPSLTMPLPSVIALK---EYIPQSRT 75
Query: 165 KNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
+R N+ RD FTCQYC ++ LT DHV P S+GG +W+N+VAAC CN +K
Sbjct: 76 PA-FTRFNVFLRDKFTCQYCDTKLPAVELTFDHVTPRSKGGRSRWDNVVAACSPCNLKKA 134
Query: 222 KKTLEEANMQLSRVPKAPKDYDI 244
K + +M + P AP + +
Sbjct: 135 NKMPAQCHMHPLKKPAAPSVWQL 157
>gi|386351828|ref|YP_006050076.1| HNH endonuclease [Rhodospirillum rubrum F11]
gi|346720264|gb|AEO50279.1| HNH endonuclease [Rhodospirillum rubrum F11]
Length = 154
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 69/123 (56%), Gaps = 7/123 (5%)
Query: 123 FMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQ 182
FM++ V+ YD+ ++SP+ +P+V+ ++ + V KR +R N+ RD F CQ
Sbjct: 5 FMDRVCVVSEYDRVVHSPSLDLSLPSVISLKEYVPVAKR----AAFTRFNVFLRDGFACQ 60
Query: 183 YCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
YC R +LT DHVVP S+GG W N+V AC CN RK +T EA M L + P P
Sbjct: 61 YCGIRLPAHDLTFDHVVPRSKGGVTAWNNVVTACGPCNMRKANRTPREAAMPLLQRPAEP 120
Query: 240 KDY 242
+
Sbjct: 121 STH 123
>gi|428218140|ref|YP_007102605.1| HNH endonuclease [Pseudanabaena sp. PCC 7367]
gi|427989922|gb|AFY70177.1| HNH endonuclease [Pseudanabaena sp. PCC 7367]
Length = 179
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 83/142 (58%), Gaps = 5/142 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQ---TINSPNGSFYIPAVLRVRHLLQ 157
+V +Y P+ V +RAI L +A+ ++ ++ +P +P +R+ +
Sbjct: 18 VVFSRNYLPIARVNMRRAIALLVTGRAEPIDSMGGRTWSVLAPKFVLKVPEHIRL--TIG 75
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
+R ++R+ ++ RDN +CQYC + ++LT+DHV+P SRGG WENLVAAC +CN
Sbjct: 76 NTERLWKVPPVNRREVLRRDNHSCQYCGAAKHLTLDHVMPRSRGGGHSWENLVAACERCN 135
Query: 218 SRKGKKTLEEANMQLSRVPKAP 239
KG +T EA M+L + PKAP
Sbjct: 136 HSKGNRTPAEAGMRLVKQPKAP 157
>gi|365890855|ref|ZP_09429340.1| conserved hypothetical protein [Bradyrhizobium sp. STM 3809]
gi|365333246|emb|CCE01871.1| conserved hypothetical protein [Bradyrhizobium sp. STM 3809]
Length = 178
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 81/145 (55%), Gaps = 12/145 (8%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P++VVCW+ AI V+ YD+ + SP+ + +P+V+ +R + R +
Sbjct: 17 LSYFPLSVVCWEDAIRAVVSGSHVVVAEYDRVVRSPSVTLRLPSVIALRDYV----RPAM 72
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRE---NLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
+ +R N+ RD F CQYC R LT DHVVP + GGE W N+VAAC CN+RK
Sbjct: 73 RVPFTRFNVFLRDRFECQYCGGRYFHGELTFDHVVPRADGGETSWTNIVAACSPCNARKD 132
Query: 222 KKTLEEANMQLSRVPKAPKDYDILA 246
++ ++ R P P ++++A
Sbjct: 133 RRYVKP-----RRPPVEPTRHELMA 152
>gi|430742350|ref|YP_007201479.1| restriction endonuclease [Singulisphaera acidiphila DSM 18658]
gi|430014070|gb|AGA25784.1| restriction endonuclease [Singulisphaera acidiphila DSM 18658]
Length = 210
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 87/176 (49%), Gaps = 26/176 (14%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYD-----------QTINSPNGSFYIP-- 147
LVL+ Y V+V+ +RA CL F + A+V+ D + ++ F P
Sbjct: 14 LVLNKFYMAVHVISVRRAFCLLFKDLAEVITLDDGRYASFDFQSWREVSEARARFKHPDD 73
Query: 148 ----------AVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDH 194
V RV LL + R K +R+N+ RD CQYC R L++DH
Sbjct: 74 EFIRTVHFEIQVPRVVRLLAYDRLPRQKVKFNRRNIFARDGNRCQYCGKRFATSELSLDH 133
Query: 195 VVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLT 250
V+P SRGG WEN+V AC KCN RKG +T EANM+L + P P+ L + L+
Sbjct: 134 VLPRSRGGLANWENIVCACLKCNVRKGGRTPWEANMRLIKEPIQPRTSPSLCLKLS 189
>gi|149176984|ref|ZP_01855593.1| restriction endonuclease [Planctomyces maris DSM 8797]
gi|148844239|gb|EDL58593.1| restriction endonuclease [Planctomyces maris DSM 8797]
Length = 216
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 90/179 (50%), Gaps = 40/179 (22%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT------------------------ 136
L L+ +Y PV+V+ KRA CL + A+V+ D T
Sbjct: 19 LALNKTYSPVHVISAKRAFCLLSKDIAEVISVEDGTYMNYDFSSWIEISGLRAEFNERDE 78
Query: 137 ----INSPNGSFYIPAVLRVRHLLQVVKRRRIKNN---LSRKNLMYRDNFTCQYCS---S 186
I S N +P V+R+ ++ RI NN +R+N+ RD++ CQYC S
Sbjct: 79 LEDWIQSVNFEIQVPRVVRL------LRYDRIPNNTIKFNRRNIFIRDSYRCQYCQKKFS 132
Query: 187 RENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDIL 245
+ L++DHV+P S GG WEN+V+AC +CN++KG +T +A M+L + P P +L
Sbjct: 133 LKQLSLDHVIPRSHGGGMSWENIVSACRRCNTKKGGRTPSQAGMKLFQKPAKPSRNPVL 191
>gi|318060379|ref|ZP_07979102.1| hypothetical protein SSA3_20733 [Streptomyces sp. SA3_actG]
Length = 227
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 77/139 (55%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE ++S + + P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLENKAQCLEETGAFLHSASRTVPAPSVVRLKRYVRVPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC S ++DHVVP SRGG W+N+VA+C +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGKCAYCGSVAT-SVDHVVPRSRGGRHAWDNVVASCRRCNHTK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ L + +L P P
Sbjct: 122 ADRYLADLGWRLRHAPAPP 140
>gi|440681753|ref|YP_007156548.1| HNH endonuclease [Anabaena cylindrica PCC 7122]
gi|428678872|gb|AFZ57638.1| HNH endonuclease [Anabaena cylindrica PCC 7122]
Length = 178
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 83/143 (58%), Gaps = 7/143 (4%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT----INSPNGSFYIPAVLRVRHLL 156
+V +Y P++ + KRAI L +A+ L + D T I SP+ +P +R+ +
Sbjct: 18 VVFSKNYLPLSRINIKRAIVLLVTGQAESLNF-DTTKQWEIRSPSVVLQVPEHIRL--TV 74
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+R ++R+ ++ RDN TCQYC S + LT+DHV+P S+GG+ W+N+V AC KC
Sbjct: 75 GNPERHWKIPPVNRREVLKRDNHTCQYCGSTKRLTLDHVIPRSKGGQHTWDNVVTACDKC 134
Query: 217 NSRKGKKTLEEANMQLSRVPKAP 239
NS K + L EA M L PKAP
Sbjct: 135 NSIKSDRLLYEAGMVLKTKPKAP 157
>gi|302529048|ref|ZP_07281390.1| HNH endonuclease [Streptomyces sp. AA4]
gi|302437943|gb|EFL09759.1| HNH endonuclease [Streptomyces sp. AA4]
Length = 163
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 80/145 (55%), Gaps = 15/145 (10%)
Query: 102 VLDISYRPVNVVCWKRAICLEFMEKADVL-------EYYDQTINSPNGSFYIPAVLRVRH 154
+L+ ++ P+ V +RA+ L KA+V+ E + T++ P +P+V+R+
Sbjct: 1 MLNATFEPLTAVPMRRAVVLVMCGKAEVVHGDPGGVELHAATVSLP-----VPSVIRLST 55
Query: 155 LLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACF 214
++V R ++ L+R LM+RD C YC R TIDHVVP S+GG W N VA C
Sbjct: 56 YVRVPYRAQVP--LTRAGLMHRDRHRCAYCGGRAE-TIDHVVPRSKGGPHSWTNCVACCA 112
Query: 215 KCNSRKGKKTLEEANMQLSRVPKAP 239
KCN RK + L E +L VP+AP
Sbjct: 113 KCNHRKADRLLSEIGWRLRVVPRAP 137
>gi|408829895|ref|ZP_11214785.1| endonuclease [Streptomyces somaliensis DSM 40738]
Length = 178
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 78/139 (56%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE ++S + P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLENKAVCLEESGAFLHSATRAIAAPSVVRLKRFVRVPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+RK L RD C YC ++DHVVP SRGG+ W+N+VAAC +CN K
Sbjct: 65 RGPVP--LTRKALFARDGGRCMYCGGVAT-SVDHVVPRSRGGKHAWDNVVAACRRCNHVK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ L E +L + P+ P
Sbjct: 122 ADRHLRELGWRLHQPPEPP 140
>gi|256396443|ref|YP_003118007.1| HNH endonuclease [Catenulispora acidiphila DSM 44928]
gi|256362669|gb|ACU76166.1| HNH endonuclease [Catenulispora acidiphila DSM 44928]
Length = 180
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 79/140 (56%), Gaps = 3/140 (2%)
Query: 100 GLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
L+L+ SY P+ VV +RA+ L +KA LE +++ S P+V+R+ ++V
Sbjct: 4 ALLLNASYEPLCVVSQRRAVVLILSDKAVTLEGSGDLLHAATWSMPAPSVIRLTRYIRVP 63
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
RR + L+R+ + RD C YC + +IDHV+P SRGG+ W+N+V+AC +CN
Sbjct: 64 NRRAVP--LTRRAIFARDGGRCVYCDAPAT-SIDHVIPRSRGGQHAWDNVVSACRRCNHV 120
Query: 220 KGKKTLEEANMQLSRVPKAP 239
K + L + ++ R P P
Sbjct: 121 KADRPLPDLGWRMRRAPAQP 140
>gi|398787110|ref|ZP_10549614.1| endonuclease [Streptomyces auratus AGR0001]
gi|396993272|gb|EJJ04351.1| endonuclease [Streptomyces auratus AGR0001]
Length = 167
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 90/168 (53%), Gaps = 11/168 (6%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT-INSPNGSFYIPAVLRVRHLLQVV 159
LVL+ S+ P++ V +RA+ L +KA V + I + + +P V+R+ ++V
Sbjct: 5 LVLNASFEPLSTVTLRRAVVLVMQDKAVVEHAHPGLRIRAASVDVPVPQVIRLSRYVRVP 64
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
RRR SR+ ++ RD C YC R T+DHVVP S GG W N VA+C + N R
Sbjct: 65 FRRRAP--WSRRGVLVRDQHRCAYCGRRAT-TVDHVVPRSHGGGDTWLNTVASCAEDNHR 121
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEW 267
K +T E+A MQL R P P D L L++ + VR+G P EW
Sbjct: 122 KADRTPEQAGMQLLRRPFEPTPADAL---LSTLGV---SVREGLP-EW 162
>gi|399992823|ref|YP_006573063.1| HNH endonuclease [Phaeobacter gallaeciensis DSM 17395 = CIP 105210]
gi|398657378|gb|AFO91344.1| HNH endonuclease [Phaeobacter gallaeciensis DSM 17395 = CIP 105210]
Length = 188
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 95/183 (51%), Gaps = 19/183 (10%)
Query: 98 FRGLVLD-----ISYRPVNVVCWKRAICLEFMEKA-DVLEYYDQTINSPNGSFYIPAVLR 151
R L+L+ +S+ P++V W+ A E+ V Y D ++S + +F +PAV+
Sbjct: 8 LRTLILNADMQPLSWAPLSVCNWQDAFVAVHQERVIQVKTYDDVAVHSASDTFEVPAVVA 67
Query: 152 VRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWEN 208
++ R+R K +R N+ RD F CQYC +R ++LT DHV+P S+GG W N
Sbjct: 68 LKRY-----RKRKKVAFTRYNVFLRDEFCCQYCGNRFAAKDLTFDHVIPRSKGGASSWTN 122
Query: 209 LVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWR 268
+VA C N RKG ++ ++L R P AP +++ AI A R+ R + W
Sbjct: 123 IVACCSADNLRKGNLKPQQVGLKLRRKPFAPSPHELDAI-----ARRLPRPKPELHQTWM 177
Query: 269 QYL 271
+L
Sbjct: 178 DFL 180
>gi|339025163|ref|ZP_08647004.1| endonuclease [Acetobacter tropicalis NBRC 101654]
gi|338749831|dbj|GAA10308.1| endonuclease [Acetobacter tropicalis NBRC 101654]
Length = 187
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 84/158 (53%), Gaps = 18/158 (11%)
Query: 98 FRGLVLD-----ISYRPVNVVCWK---RAICLEFMEKADVLEYYDQTINSPNGSFYIPAV 149
F LVL+ +SY P+++ W+ +A+CL+ + VL YD ++SP+ +F +P+V
Sbjct: 9 FPALVLNADFRPLSYFPLSLWSWQDTMKAVCLD---RVSVLSEYDAEVHSPHRTFRLPSV 65
Query: 150 LRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKW 206
+ ++ + + K +R N+ RDNF+CQYC + +LT DHV+P +GG W
Sbjct: 66 IALKDYVPAAR----KPAFTRFNVFLRDNFSCQYCGDKFPTHDLTFDHVIPRCKGGRTTW 121
Query: 207 ENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDI 244
EN+V AC CN RKG M P P + +
Sbjct: 122 ENVVTACGVCNLRKGPHLPHIIGMLPRARPARPTSWQL 159
>gi|453050565|gb|EME98099.1| HNH endonuclease [Streptomyces mobaraensis NBRC 13819 = DSM 40847]
Length = 178
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 78/139 (56%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L EKA LE ++S + + P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALILVLNEKAISLEDTGAYLHSASCTIPAPSVVRLKRFVRVPF 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC ++DHVVP SRGG+ WEN+VAAC +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGRCAYCGGVAT-SVDHVVPRSRGGQHAWENVVAACRRCNHVK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ + E +L P P
Sbjct: 122 ADRHVSELGWRLRHQPAPP 140
>gi|420913784|ref|ZP_15377094.1| restriction endonuclease [Mycobacterium abscessus 6G-0125-S]
gi|420919287|ref|ZP_15382588.1| restriction endonuclease [Mycobacterium abscessus 6G-0728-S]
gi|392125883|gb|EIU51635.1| restriction endonuclease [Mycobacterium abscessus 6G-0125-S]
gi|392138510|gb|EIU64246.1| restriction endonuclease [Mycobacterium abscessus 6G-0728-S]
Length = 151
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 80/149 (53%), Gaps = 5/149 (3%)
Query: 102 VLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT--INSPNGSFYIPAVLRVRHLLQVV 159
V + YR + V W+ A+ L V+E + I+ P+ +P + + + V
Sbjct: 3 VYNADYRVLTHVTWQEAVRLLLRGSVYVIERHSPAVHIHGPSTVIELPLSVALHQYIYVP 62
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
RR + ++R ++ RD++TC YC + T+DHV+P SRGG+ W+NLV AC CN R
Sbjct: 63 YRRGTR--VTRDGVLTRDSYTCAYCGGHGD-TLDHVIPESRGGQNTWDNLVTACAPCNGR 119
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIP 248
KG +T EA M+L P P++ D +P
Sbjct: 120 KGNRTPAEAGMRLRWEPYEPRERDRYRVP 148
>gi|420924683|ref|ZP_15387976.1| restriction endonuclease [Mycobacterium abscessus 6G-1108]
gi|420980456|ref|ZP_15443630.1| restriction endonuclease [Mycobacterium abscessus 6G-0728-R]
gi|392149010|gb|EIU74727.1| restriction endonuclease [Mycobacterium abscessus 6G-1108]
gi|392177455|gb|EIV03110.1| restriction endonuclease [Mycobacterium abscessus 6G-0728-R]
Length = 165
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 80/149 (53%), Gaps = 5/149 (3%)
Query: 102 VLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT--INSPNGSFYIPAVLRVRHLLQVV 159
V + YR + V W+ A+ L V+E + I+ P+ +P + + + V
Sbjct: 17 VYNADYRVLTHVTWQEAVRLLLRGSVYVIERHSPAVHIHGPSTVIELPLSVALHQYIYVP 76
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
RR + ++R ++ RD++TC YC + T+DHV+P SRGG+ W+NLV AC CN R
Sbjct: 77 YRRGTR--VTRDGVLTRDSYTCAYCGGHGD-TLDHVIPESRGGQNTWDNLVTACAPCNGR 133
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIP 248
KG +T EA M+L P P++ D +P
Sbjct: 134 KGNRTPAEAGMRLRWEPYEPRERDRYRVP 162
>gi|149176188|ref|ZP_01854804.1| HNH endonuclease domain protein [Planctomyces maris DSM 8797]
gi|148845055|gb|EDL59402.1| HNH endonuclease domain protein [Planctomyces maris DSM 8797]
Length = 198
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 88/158 (55%), Gaps = 18/158 (11%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYD-QTINSPNGSFYIP-----------A 148
L+L+ +++PV V RA+ + E A +++ D QT + + + P +
Sbjct: 11 LILNRNWQPVGVTTVARAVVKIWNETARIVDPSDYQTYSWADWAQLKPEDDELAIQSSHS 70
Query: 149 VLRVRHLLQVVKRRRIKNNL---SRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGG 202
RV ++ ++K R+ N+ SR+N+ RD+FTCQYC + E LTIDHV P S+GG
Sbjct: 71 RFRVPEVITLLKYDRVPRNVVTFSRRNVFKRDHFTCQYCGCQPGSEELTIDHVTPRSQGG 130
Query: 203 EWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPK 240
E W N V AC +CNSRK +T +A M+L + P PK
Sbjct: 131 ETSWSNCVLACVECNSRKAARTPGQAGMKLQKEPVRPK 168
>gi|289705448|ref|ZP_06501842.1| HNH endonuclease domain protein [Micrococcus luteus SK58]
gi|289557833|gb|EFD51130.1| HNH endonuclease domain protein [Micrococcus luteus SK58]
Length = 164
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 76/143 (53%), Gaps = 3/143 (2%)
Query: 98 FRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQ 157
R LVL+ Y P++VV +RA+ L KA VLE + SP ++ P V+ + ++
Sbjct: 1 MRTLVLNAGYEPLSVVSDRRALLLVATGKASVLEDAGDPMRSPTRAWGRPLVILLHQYIR 60
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
V +SRK ++ RD C YC + T+DHV P SRGGE WENLVA C +CN
Sbjct: 61 VPHTD--ATPVSRKGVLRRDGHRCAYCGAHAT-TVDHVRPRSRGGENTWENLVACCLRCN 117
Query: 218 SRKGKKTLEEANMQLSRVPKAPK 240
K ++LE +L P P+
Sbjct: 118 GAKADRSLEALGWRLRVEPVRPR 140
>gi|119960536|ref|YP_946809.1| HNH endonuclease domain-containing protein [Arthrobacter aurescens
TC1]
gi|119947395|gb|ABM06306.1| putative HNH endonuclease domain protein [Arthrobacter aurescens
TC1]
Length = 166
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 75/143 (52%), Gaps = 3/143 (2%)
Query: 98 FRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQ 157
R LVL+ Y P+ V+ ++RA+ L KA V+ D+ + P P+V+ + ++
Sbjct: 1 MRTLVLNAGYEPLAVITFRRALVLVLTGKASVVAEGDEPVVGPQEVLGRPSVILLNRYIR 60
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
R +SR+ ++ RD C YC + TIDHV P SRGG WENLVAAC KCN
Sbjct: 61 --PRYNRITAVSRRGVLRRDGHRCAYCGKTAH-TIDHVHPKSRGGADSWENLVAACLKCN 117
Query: 218 SRKGKKTLEEANMQLSRVPKAPK 240
+ K TL E +L P P+
Sbjct: 118 NAKSDHTLAEMGWKLRFKPGVPQ 140
>gi|403526047|ref|YP_006660934.1| HNH endonuclease domain protein [Arthrobacter sp. Rue61a]
gi|403228474|gb|AFR27896.1| putative HNH endonuclease domain protein [Arthrobacter sp. Rue61a]
Length = 166
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 75/143 (52%), Gaps = 3/143 (2%)
Query: 98 FRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQ 157
R LVL+ Y P+ V+ ++RA+ L KA V+ D+ + P P+V+ + ++
Sbjct: 1 MRTLVLNAGYEPLAVITFRRALVLVLTGKASVVAEGDEPVVGPQEILGRPSVILLNRYIR 60
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
R +SR+ ++ RD C YC + TIDHV P SRGG WENLVAAC KCN
Sbjct: 61 --PRYNRITAVSRRGVLRRDGHRCAYCGKTAH-TIDHVHPKSRGGADSWENLVAACLKCN 117
Query: 218 SRKGKKTLEEANMQLSRVPKAPK 240
+ K TL E +L P P+
Sbjct: 118 NAKSDHTLAEMGWKLRFKPGVPQ 140
>gi|333027063|ref|ZP_08455127.1| putative HNH endonuclease [Streptomyces sp. Tu6071]
gi|332746915|gb|EGJ77356.1| putative HNH endonuclease [Streptomyces sp. Tu6071]
Length = 227
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 77/139 (55%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE ++S + + P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLENKAQCLEETGAFLHSASRTVPAPSVVRLKRYVRVPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC S ++DHVVP SRGG W+N+VA+C +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGKCAYCGSVAT-SVDHVVPRSRGGRHAWDNVVASCRRCNHTK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ L + +L P P
Sbjct: 122 ADRYLADLGWRLRHAPAPP 140
>gi|359778191|ref|ZP_09281462.1| hypothetical protein ARGLB_083_01830 [Arthrobacter globiformis NBRC
12137]
gi|359304654|dbj|GAB15291.1| hypothetical protein ARGLB_083_01830 [Arthrobacter globiformis NBRC
12137]
Length = 166
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 74/142 (52%), Gaps = 3/142 (2%)
Query: 98 FRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQ 157
R LVL+ Y P+ VV ++RA+ L KA V+ D + P P+V+ + ++
Sbjct: 1 MRTLVLNAGYEPLAVVTFRRALVLVLTGKASVVAEGDDPVVGPQDIMGRPSVILLNRYIR 60
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
R + +SR+ ++ RD C YC + TIDHV P SRGG WENLVAAC +CN
Sbjct: 61 --PRYNMITAVSRRGVLRRDGHRCAYCGKAAH-TIDHVQPKSRGGADSWENLVAACLRCN 117
Query: 218 SRKGKKTLEEANMQLSRVPKAP 239
+ KG T E +L P P
Sbjct: 118 NVKGDHTPSEMGWKLRFDPAPP 139
>gi|23015975|ref|ZP_00055737.1| COG1403: Restriction endonuclease [Magnetospirillum magnetotacticum
MS-1]
Length = 188
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 78/143 (54%), Gaps = 8/143 (5%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+S+ P++V W+ A+ ++ + Y+ + S + SF IP+V+ ++ RR
Sbjct: 21 LSWGPLSVWSWQDALVAVLKDRVHQVCAYELVVRSASRSFQIPSVVALKDY-----HRRK 75
Query: 165 KNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
+ +R ++ RD F CQYC +LT DHV+P S+GG+ W+N+V C N RKG
Sbjct: 76 SVSFTRYHVFLRDGFRCQYCGKVFDTRDLTFDHVIPRSKGGKTTWDNIVTCCAADNLRKG 135
Query: 222 KKTLEEANMQLSRVPKAPKDYDI 244
K+L EA M L+R P P Y +
Sbjct: 136 AKSLREAGMHLNRRPFTPTPYQM 158
>gi|407279583|ref|ZP_11108053.1| endonuclease [Rhodococcus sp. P14]
Length = 207
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 84/162 (51%), Gaps = 7/162 (4%)
Query: 89 DEEFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYI 146
D+ + R L+L+ +Y P+ + +RA+ L KAD + + + S + I
Sbjct: 31 DDAVPDWVKRRVLLLNATYEPLTALPARRAVVLMAGGKADTVHDDPLGPLVRSAEWAVQI 90
Query: 147 PAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKW 206
P V+R+R + V R+ ++R LM+RD C YC ++ TIDHVVP SRGGE W
Sbjct: 91 PWVIRLRTFVHVPYHARVP--MTRAALMHRDRNRCAYCGAKAE-TIDHVVPRSRGGEHSW 147
Query: 207 ENLVAACFKCNSRKGKKTLEEANMQL--SRVPKAPKDYDILA 246
EN VA C CN RK K L E L + VP + + +LA
Sbjct: 148 ENCVACCASCNHRKADKLLSELGWTLRAALVPPKGRHWRLLA 189
>gi|283781754|ref|YP_003372509.1| HNH endonuclease [Pirellula staleyi DSM 6068]
gi|283440207|gb|ADB18649.1| HNH endonuclease [Pirellula staleyi DSM 6068]
Length = 198
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 90/172 (52%), Gaps = 21/172 (12%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVL-----EYYDQT----INSPNGSFYIPAVLR 151
LVL+ +++P++V +RA+ L + E A V+ E YD I G Y+ +V
Sbjct: 11 LVLNRNWQPIHVSTVQRALILVWNEAAQVVDPRDYELYDWVDWAKIPPGEGELYLQSVRS 70
Query: 152 VRHLLQVVKRRRIKN------NLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGG 202
+ +V+ R + SR+NL RD++TCQYC + LTIDHV+P SRGG
Sbjct: 71 QMRVPEVIALRTFDKLPERNVSFSRRNLFKRDHYTCQYCGCQPGMHELTIDHVLPRSRGG 130
Query: 203 EWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPK---DYDILAIPLTS 251
WEN V AC +CN RK K +EA M++ + P P+ Y IP+ S
Sbjct: 131 ASSWENCVLACVECNKRKADKLPDEARMKIRQKPIRPRWRPLYAATHIPIQS 182
>gi|453048863|gb|EME96511.1| endonuclease [Streptomyces mobaraensis NBRC 13819 = DSM 40847]
Length = 168
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADV-LEYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ S+ P+ V +RA+ L +KA V L ++S P V+R+R ++V
Sbjct: 5 LVLNASFEPLATVSLRRAVVLVLQDKAVVELARPGLRLHSSAMELPAPQVIRLRRYVRVP 64
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
RRR SR+ ++ RD C YC R T+DHV+P SRGG W N VAAC + N R
Sbjct: 65 FRRRAP--WSRRGVLARDRHRCAYCGRRAT-TVDHVLPRSRGGGDTWLNTVAACAEDNHR 121
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAI 247
K +T E+A M+L R P P D L +
Sbjct: 122 KADRTPEQAGMRLLRRPFEPTPSDALLL 149
>gi|400754500|ref|YP_006562868.1| HNH endonuclease [Phaeobacter gallaeciensis 2.10]
gi|398653653|gb|AFO87623.1| HNH endonuclease [Phaeobacter gallaeciensis 2.10]
Length = 188
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 94/183 (51%), Gaps = 19/183 (10%)
Query: 98 FRGLVLD-----ISYRPVNVVCWKRAICLEFMEKA-DVLEYYDQTINSPNGSFYIPAVLR 151
R L+L+ +S+ P++V W+ A E+ V Y D ++S + SF +P+V+
Sbjct: 8 LRTLILNADMQPLSWAPLSVCNWQDAFVAVHQERVIQVKTYEDVEVHSASQSFEVPSVVA 67
Query: 152 VRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWEN 208
++ R+R K +R N+ RD F CQYC R ++LT DHV+P S+GG W N
Sbjct: 68 LKRY-----RKRKKVAFTRYNVFLRDEFCCQYCGKRFAAKDLTFDHVIPRSKGGASSWTN 122
Query: 209 LVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWR 268
+VA C N RKG ++ ++L R P AP +++ AI A R+ R + W
Sbjct: 123 IVACCSADNLRKGNLKPQQVGLKLRRKPFAPSPHELDAI-----ARRLPRPKPELHQTWM 177
Query: 269 QYL 271
+L
Sbjct: 178 DFL 180
>gi|239916958|ref|YP_002956516.1| HNH endonuclease [Micrococcus luteus NCTC 2665]
gi|281414584|ref|ZP_06246326.1| HNH endonuclease [Micrococcus luteus NCTC 2665]
gi|239838165|gb|ACS29962.1| HNH endonuclease [Micrococcus luteus NCTC 2665]
Length = 164
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 76/143 (53%), Gaps = 3/143 (2%)
Query: 98 FRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQ 157
R LVL+ Y P++VV +RA+ L KA VLE + SP ++ P V+ + ++
Sbjct: 1 MRTLVLNAGYEPLSVVSDRRALLLVATGKASVLEDAGDPMRSPTRAWGRPLVILLHQYIR 60
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
V +SRK ++ RD C YC + T+DHV P SRGGE WENLVA C +CN
Sbjct: 61 VPHTD--ATPVSRKGVLRRDGHRCAYCGA-PATTVDHVRPRSRGGENTWENLVACCLRCN 117
Query: 218 SRKGKKTLEEANMQLSRVPKAPK 240
K ++LE +L P P+
Sbjct: 118 GAKADRSLEALGWRLRVEPVRPR 140
>gi|456356262|dbj|BAM90707.1| hypothetical protein S58_47280 [Agromonas oligotrophica S58]
Length = 178
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 80/145 (55%), Gaps = 12/145 (8%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P++V W+ AI V+ YD+ + SP+ + +P+V+ +R + R +
Sbjct: 17 LSYFPLSVFGWEDAIRAVVSGSHVVVAEYDRVVRSPSVTMRLPSVIALRDYV----RPAM 72
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRE---NLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
+ +R N+ RD FTCQYC R LT DHVVP + GGE W N+VAAC CN+RK
Sbjct: 73 RVPFTRFNVFLRDRFTCQYCGGRHLHGELTFDHVVPRADGGETSWTNIVAACSPCNARKD 132
Query: 222 KKTLEEANMQLSRVPKAPKDYDILA 246
++ L+ R P P ++++A
Sbjct: 133 RRYLKP-----RRPPFEPTRHELMA 152
>gi|441152217|ref|ZP_20965977.1| endonuclease [Streptomyces rimosus subsp. rimosus ATCC 10970]
gi|440618776|gb|ELQ81839.1| endonuclease [Streptomyces rimosus subsp. rimosus ATCC 10970]
Length = 178
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L EKA LE ++S P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALILVLNEKAVSLEESGALMHSATRVMPAPSVVRLKRFVRVPF 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC ++DHVVP SRGG+ WEN+VAAC +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGRCMYCGGVAT-SVDHVVPRSRGGQHTWENVVAACRRCNHVK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ + E +L P P
Sbjct: 122 ADRHVAEIGWRLRHQPAPP 140
>gi|398785966|ref|ZP_10548779.1| endonuclease [Streptomyces auratus AGR0001]
gi|396994071|gb|EJJ05125.1| endonuclease [Streptomyces auratus AGR0001]
Length = 178
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L EKA LE ++S P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALILVLNEKAVSLEESGALMHSATHVIPAPSVVRLKRFVRVPF 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC ++DHV+P SRGG+ WEN+VAAC +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGRCMYCGGVAT-SVDHVIPRSRGGQHTWENVVAACRRCNHVK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ + E +L P P
Sbjct: 122 ADRHVAEIGWRLRHQPAPP 140
>gi|295838864|ref|ZP_06825797.1| HNH endonuclease [Streptomyces sp. SPB74]
gi|295827228|gb|EDY42346.2| HNH endonuclease [Streptomyces sp. SPB74]
Length = 221
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 77/139 (55%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE ++S + + P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLENKAQCLEETGVFLHSASRTVPAPSVVRLKRYVRVPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC S ++DHVVP SRGG W+N+VA+C +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGKCAYCGSVAT-SVDHVVPRSRGGRHAWDNVVASCRRCNHTK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ L + +L P P
Sbjct: 122 ADRYLADLGWRLRHAPAPP 140
>gi|254416426|ref|ZP_05030179.1| HNH endonuclease domain protein [Coleofasciculus chthonoplastes PCC
7420]
gi|196176864|gb|EDX71875.1| HNH endonuclease domain protein [Coleofasciculus chthonoplastes PCC
7420]
Length = 172
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 84/143 (58%), Gaps = 7/143 (4%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYY---DQTINSPNGSFYIPAVLRVRHLLQ 157
+V +Y P++ V KRA+ L KA+ L+++ + ++SP+ +P +R L +
Sbjct: 13 VVFSKNYLPLSRVNMKRAVTLLITGKAEPLDWFKGQEYPVHSPSLVVLVPEQIR---LTK 69
Query: 158 VVKRRRIK-NNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
R K ++R+ ++ RD CQYC S + LT+DHV+P S+GG W+N+V AC C
Sbjct: 70 ANCDRVWKVPPVNRREVLRRDKHRCQYCGSPKRLTLDHVIPRSKGGNHGWDNVVTACQSC 129
Query: 217 NSRKGKKTLEEANMQLSRVPKAP 239
NS+KG +T ++A M L PKAP
Sbjct: 130 NSQKGDRTPQQAGMTLLTQPKAP 152
>gi|209967353|ref|YP_002300268.1| HNH endonuclease family protein [Rhodospirillum centenum SW]
gi|209960819|gb|ACJ01456.1| HNH endonuclease family protein, putative [Rhodospirillum centenum
SW]
Length = 189
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 77/143 (53%), Gaps = 7/143 (4%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ A+ +++ +++ YD+ + SP +P+V+ ++ + +R
Sbjct: 22 LSYFPLSLWSWQEAVKAVVLDRVNIISVYDRVVRSPTQEIRLPSVISLKEYIPATRR--- 78
Query: 165 KNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
+R N+ RD F+CQYCS + LT DHV+P S+GG WEN+V +C CN KG
Sbjct: 79 -PAFTRFNVFLRDRFSCQYCSRSFPTQELTFDHVIPRSKGGRTTWENVVTSCSACNLMKG 137
Query: 222 KKTLEEANMQLSRVPKAPKDYDI 244
+ + M + P P + +
Sbjct: 138 SRYPHQCGMFPVQPPFQPTAHQL 160
>gi|182438669|ref|YP_001826388.1| endonuclease [Streptomyces griseus subsp. griseus NBRC 13350]
gi|326779318|ref|ZP_08238583.1| HNH endonuclease [Streptomyces griseus XylebKG-1]
gi|178467185|dbj|BAG21705.1| putative endonuclease [Streptomyces griseus subsp. griseus NBRC
13350]
gi|326659651|gb|EGE44497.1| HNH endonuclease [Streptomyces griseus XylebKG-1]
Length = 178
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 77/139 (55%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE ++S + P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLENKAICLEESGSFLHSATRAVPAPSVVRLKRFVRVPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC + ++DHV+P SRGG+ W+N+VAAC +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGRCMYCGAAAT-SVDHVIPRSRGGQHAWDNVVAACRRCNHVK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ L E +L P P
Sbjct: 122 ADRHLPELGWRLRHQPAPP 140
>gi|294812656|ref|ZP_06771299.1| Putative endonuclease [Streptomyces clavuligerus ATCC 27064]
gi|294325255|gb|EFG06898.1| Putative endonuclease [Streptomyces clavuligerus ATCC 27064]
Length = 226
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 86/184 (46%), Gaps = 8/184 (4%)
Query: 56 SSMNKKKSSKFSVDASLNVSGKGISGESEEYDSDEEFDELACFRGLVLDISYRPVNVVCW 115
S + + ++ + LN G S Y + LVL+ SY P+ VV
Sbjct: 13 SPLRPRGGARTWPEERLNSDRPGASHAPPAYKEASAVPHV-----LVLNASYEPLGVVPL 67
Query: 116 KRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMY 175
+RA+ L KA LE ++S P+V+R++ ++V R + L+RK L
Sbjct: 68 RRALVLVLENKALCLEESGAFLHSATRIIAAPSVVRLKRFVRVPYRGPVP--LTRKALFA 125
Query: 176 RDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRV 235
RD C YC ++DHV+P SRGG+ W+N+VAAC CN K + L E +L
Sbjct: 126 RDGGRCMYCGGVAT-SVDHVIPRSRGGQHAWDNVVAACRHCNHVKADRQLRELGWRLRHQ 184
Query: 236 PKAP 239
P P
Sbjct: 185 PAPP 188
>gi|294677717|ref|YP_003578332.1| HNH endonuclease [Rhodobacter capsulatus SB 1003]
gi|294476537|gb|ADE85925.1| HNH endonuclease family protein [Rhodobacter capsulatus SB 1003]
Length = 188
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 92/183 (50%), Gaps = 19/183 (10%)
Query: 98 FRGLVLD-----ISYRPVNVVCWKRAICLEFMEKADVLEYYDQT-INSPNGSFYIPAVLR 151
R LVL+ +S+ P++ W++ + E+ ++ Y+ ++S N SF IPAV+
Sbjct: 8 LRTLVLNADMQPLSWAPLSAWSWQQGLVAVLQERVIQVKTYEGLRVSSANQSFEIPAVVA 67
Query: 152 VRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWEN 208
++ RRR K +R N+ RD F CQYC R LT DHV+P +R G +W N
Sbjct: 68 LK-----TYRRRKKVPYTRFNVFLRDEFRCQYCGKRFPASELTFDHVIPRARSGGSRWTN 122
Query: 209 LVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWR 268
+V AC N RKG +T +EA M+L R P P L A R+ ++G W
Sbjct: 123 IVTACGPDNLRKGCRTPKEAGMRLLRTPFEPSPRQ-----LDDIARRLPMAKEGLHQTWL 177
Query: 269 QYL 271
+L
Sbjct: 178 DFL 180
>gi|409357117|ref|ZP_11235502.1| restriction endonuclease [Dietzia alimentaria 72]
Length = 203
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 83/144 (57%), Gaps = 5/144 (3%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT--INSPNGSFYIPAVLRVRHLL 156
R L+L+ SY + + +RA+ + KADV+ + I S + + +P+V+R+R +
Sbjct: 37 RVLLLNASYEALTALPARRAVVMLLCGKADVVHEHPAAVMIRSVDTAIRVPSVIRLREYV 96
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
++ R ++ ++R LMYRD C YC+++ TIDHV+P SRGG W+N VA+C C
Sbjct: 97 RIPYRAQVP--MTRAALMYRDAHRCGYCNAKAT-TIDHVIPRSRGGVHGWQNCVASCAPC 153
Query: 217 NSRKGKKTLEEANMQLSRVPKAPK 240
N RK + L E +L +AP+
Sbjct: 154 NRRKADRLLSELGWELRVSLEAPQ 177
>gi|357413416|ref|YP_004925152.1| HNH endonuclease [Streptomyces flavogriseus ATCC 33331]
gi|320010785|gb|ADW05635.1| HNH endonuclease [Streptomyces flavogriseus ATCC 33331]
Length = 178
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 78/139 (56%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE ++S + + P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLENKAICLEESGAFMHSASRAVPAPSVVRLKRFVRVPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC + ++DHV+P SRGG+ W+N+VAAC +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGRCMYCGAAAT-SVDHVIPRSRGGQHAWDNVVAACRRCNHVK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ L E +L P P
Sbjct: 122 ADRHLPELGWRLRHQPAPP 140
>gi|239987657|ref|ZP_04708321.1| putative endonuclease [Streptomyces roseosporus NRRL 11379]
gi|291444624|ref|ZP_06584014.1| endonuclease [Streptomyces roseosporus NRRL 15998]
gi|365865316|ref|ZP_09404968.1| putative endonuclease [Streptomyces sp. W007]
gi|291347571|gb|EFE74475.1| endonuclease [Streptomyces roseosporus NRRL 15998]
gi|364005231|gb|EHM26319.1| putative endonuclease [Streptomyces sp. W007]
Length = 178
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 77/139 (55%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE ++S + P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLENKAICLEESGAFLHSATRAVPAPSVVRLKRFVRVPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC + ++DHV+P SRGG+ W+N+VAAC +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGRCMYCGAAAT-SVDHVIPRSRGGQHAWDNVVAACRRCNHVK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ L E +L P P
Sbjct: 122 ADRHLPELGWRLRHQPAPP 140
>gi|17232937|ref|NP_489475.1| hypothetical protein all8564 [Nostoc sp. PCC 7120]
gi|17134927|dbj|BAB77483.1| all8564 [Nostoc sp. PCC 7120]
Length = 178
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 80/142 (56%), Gaps = 5/142 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT---INSPNGSFYIPAVLRVRHLLQ 157
+V +Y P+ + KRAI L +A+ L + + SP+ +P +R+ +
Sbjct: 18 VVFSKNYLPLARINIKRAIVLLVTGQAESLNFGTTKQWEVRSPSVVLQVPEHIRL--TVG 75
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
+R ++R+ ++ RDN TCQYC S ++LT+DHV+P S+GG+ W+N+V AC KCN
Sbjct: 76 NPERHWKVPPVNRREVLRRDNHTCQYCGSTKHLTLDHVIPRSKGGQHTWDNVVTACEKCN 135
Query: 218 SRKGKKTLEEANMQLSRVPKAP 239
S K + EA M L PKAP
Sbjct: 136 STKSDRLPHEAGMVLKNRPKAP 157
>gi|302545386|ref|ZP_07297728.1| HNH endonuclease [Streptomyces hygroscopicus ATCC 53653]
gi|302463004|gb|EFL26097.1| HNH endonuclease [Streptomyces himastatinicus ATCC 53653]
Length = 179
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 77/139 (55%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L +KA LE ++S + P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALILVLNDKAISLEDSGALMHSATRAIPAPSVVRLKRFVRVPF 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC ++DHV+P SRGG+ WEN+VAAC +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGRCAYCGGVAT-SVDHVIPRSRGGQHTWENVVAACRRCNHVK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ + E +L P P
Sbjct: 122 ADRHVAEIGWRLRHQPAPP 140
>gi|260577226|ref|ZP_05845201.1| HNH endonuclease [Rhodobacter sp. SW2]
gi|259020535|gb|EEW23856.1| HNH endonuclease [Rhodobacter sp. SW2]
Length = 188
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 92/183 (50%), Gaps = 19/183 (10%)
Query: 98 FRGLVLD-----ISYRPVNVVCWKRAICLEFMEKADVLEYYDQT-INSPNGSFYIPAVLR 151
R LVL+ +S+ P++V W+ A + L+ YD ++S + +F +PAV+
Sbjct: 8 LRTLVLNADMQPLSWAPLSVWSWQDAFVAVIQSRVVQLKTYDDVLVHSGSRAFEVPAVVA 67
Query: 152 VRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWEN 208
++ R+R +R +L RD FTCQYC R ++LT DH+VP SR G W N
Sbjct: 68 LKRY-----RKRRSVAFTRYHLFLRDEFTCQYCGGRFAAKDLTFDHIVPKSRKGLTCWSN 122
Query: 209 LVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWR 268
+VA C N RKG KT +EA M+L R P + I +AA R+ + W
Sbjct: 123 IVACCGADNLRKGNKTPQEAGMRLLRPAFQPTPHQI-----DAAARRLPGAKAELHQTWM 177
Query: 269 QYL 271
YL
Sbjct: 178 DYL 180
>gi|345015191|ref|YP_004817545.1| HNH endonuclease [Streptomyces violaceusniger Tu 4113]
gi|344041540|gb|AEM87265.1| HNH endonuclease [Streptomyces violaceusniger Tu 4113]
Length = 178
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 77/139 (55%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L +KA LE ++S + P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLNDKAISLEDSGALMHSATRAIPAPSVVRLKRFVRVPF 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC ++DHV+P SRGG+ WEN+VAAC +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGRCAYCGGVAT-SVDHVIPRSRGGQHTWENVVAACRRCNHVK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ + E +L P P
Sbjct: 122 ADRHVAEIGWRLRHQPAPP 140
>gi|344999668|ref|YP_004802522.1| HNH endonuclease [Streptomyces sp. SirexAA-E]
gi|344315294|gb|AEN09982.1| HNH endonuclease [Streptomyces sp. SirexAA-E]
Length = 196
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE ++S + P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLENKAICLEESGAFMHSATRAVPAPSVIRLKRFVRVPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC + ++DHV+P SRGG W+N+VAAC +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGRCMYCGAAAT-SVDHVIPRSRGGRHAWDNVVAACRRCNHVK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ L E +L P P
Sbjct: 122 ADRHLPELGWRLRHQPAPP 140
>gi|381167735|ref|ZP_09876941.1| putative HNH endonuclease:HNH nuclease [Phaeospirillum molischianum
DSM 120]
gi|380683108|emb|CCG41753.1| putative HNH endonuclease:HNH nuclease [Phaeospirillum molischianum
DSM 120]
Length = 186
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 77/143 (53%), Gaps = 7/143 (4%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI ++ V+ YD+ I SP + +P+V+ ++ + +R
Sbjct: 19 LSYFPLSLWSWQDAIRAVVSDRVSVVSEYDREIRSPTFTMRLPSVISLKEYVPTTRR--- 75
Query: 165 KNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
+R N+ RD F+CQYC LT DHVVP SRGG W+N+V AC CN RKG
Sbjct: 76 -PAFTRFNVFLRDRFSCQYCGHSFPTHELTFDHVVPRSRGGRTTWDNVVTACSPCNLRKG 134
Query: 222 KKTLEEANMQLSRVPKAPKDYDI 244
++ A M L P+ P + +
Sbjct: 135 CRSARAAGMTLLARPEQPSTFRL 157
>gi|338212425|ref|YP_004656480.1| HNH endonuclease [Runella slithyformis DSM 19594]
gi|336306246|gb|AEI49348.1| HNH endonuclease [Runella slithyformis DSM 19594]
Length = 170
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 82/143 (57%), Gaps = 10/143 (6%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVL----EYYDQTINSPNGSFYIPAVLRVRHLL 156
L+L+ Y +++ +A L ++ KA+++ Y+ +T+++ F +P V+R+ +
Sbjct: 6 LILNQDYSALSICSVPKAFLLVYLNKAELVAESSSYFLRTVSA---EFPMPTVIRLHRYI 62
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+ + + ++R+N+ RD C YC LT+DHV+P SRGG W+NLV AC +C
Sbjct: 63 HLPYKGVM---MTRQNIFKRDGHRCVYCGFHGELTLDHVMPKSRGGRTSWDNLVTACKRC 119
Query: 217 NSRKGKKTLEEANMQLSRVPKAP 239
N+RKG T EEA+M + P P
Sbjct: 120 NTRKGDYTPEEASMPMRHRPFKP 142
>gi|406911529|gb|EKD51304.1| HNH endonuclease [uncultured bacterium]
Length = 199
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 87/161 (54%), Gaps = 25/161 (15%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVL--EYY---------------DQTINSPNGS 143
LVL+ S+ PV++ KRAIC+ F A ++ +Y+ D+ I+
Sbjct: 7 LVLNRSFVPVHITSIKRAICMVFKGLATIVDEQYHCYDFQSWAEMSVARADECIHLTKRL 66
Query: 144 FYIPAVLRVRHLLQVVKRRRIKN-NLSRKNLMYRDNFTCQYCSS---RENLTIDHVVPAS 199
+P V+ LLQ R ++ L+R+N+ RD TCQYC R +L +DHV+P S
Sbjct: 67 IRVPRVI----LLQFYDRFPKQDIKLNRENIYLRDANTCQYCHKKHRRSDLNLDHVIPVS 122
Query: 200 RGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPK 240
+GG W+N+V +C KCN +KG +T E+A M L+ P PK
Sbjct: 123 QGGLTTWDNIVCSCLKCNHKKGGRTPEQAGMALTVKPAKPK 163
>gi|297194338|ref|ZP_06911736.1| endonuclease [Streptomyces pristinaespiralis ATCC 25486]
gi|297152232|gb|EFH31614.1| endonuclease [Streptomyces pristinaespiralis ATCC 25486]
Length = 197
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE ++S + P+V+R++ ++V
Sbjct: 24 LVLNASYEPLGVVPLRRALVLVLENKALCLEESGAFMHSESRVVAAPSVVRLKRFVRVPY 83
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+RK L RD C YC ++DHVVP SRGG+ W+N+VAAC +CN K
Sbjct: 84 RGPVP--LTRKALFARDGGRCMYCGGVAT-SVDHVVPRSRGGQHAWDNVVAACRRCNHVK 140
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ L E +L P P
Sbjct: 141 ADRHLRELGWRLRHQPAPP 159
>gi|302546486|ref|ZP_07298828.1| HNH endonuclease [Streptomyces hygroscopicus ATCC 53653]
gi|302464104|gb|EFL27197.1| HNH endonuclease [Streptomyces himastatinicus ATCC 53653]
Length = 167
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 87/168 (51%), Gaps = 11/168 (6%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT-INSPNGSFYIPAVLRVRHLLQVV 159
LVL+ S+ P++ V +RA+ L EKA V + + + +P V+R+ ++V
Sbjct: 5 LVLNASFEPLSTVTLRRAVVLVLQEKAVVERAHPGLRVRAAEVDLPVPRVIRLCRYVRVP 64
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
RRR SR+ ++ RD C YC R T+DHVVP SRGG W N VA+C + N R
Sbjct: 65 FRRRAP--WSRRGVLVRDQHRCAYCGRRAT-TVDHVVPRSRGGGDTWLNTVASCAEDNHR 121
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEW 267
K +T E+A M+L + P P D L + L + R G P EW
Sbjct: 122 KADRTPEQAGMRLLKSPFEPTPSDALLLALGAVE------RDGLP-EW 162
>gi|452957752|gb|EME63113.1| endonuclease [Rhodococcus ruber BKS 20-38]
Length = 207
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 84/162 (51%), Gaps = 7/162 (4%)
Query: 89 DEEFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVL--EYYDQTINSPNGSFYI 146
D+ + R L+L+ +Y P+ + +RA+ L KAD + + + S + I
Sbjct: 31 DDAVPDWVKRRVLLLNATYEPLTALPARRAVVLMAGGKADTVHDDPLGPLVRSAEWAVQI 90
Query: 147 PAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKW 206
P V+R+R + V R+ ++R LM+RD C YC ++ TIDHVVP SRGG+ W
Sbjct: 91 PWVIRLRTFVHVPYHARVP--MTRAALMHRDRNRCAYCGAKAE-TIDHVVPRSRGGDHSW 147
Query: 207 ENLVAACFKCNSRKGKKTLEEANMQL--SRVPKAPKDYDILA 246
EN VA C CN RK K L E L + VP + + +LA
Sbjct: 148 ENCVACCASCNHRKADKLLSELGWTLRAALVPPKGRHWRLLA 189
>gi|386386350|ref|ZP_10071514.1| endonuclease [Streptomyces tsukubaensis NRRL18488]
gi|385666199|gb|EIF89778.1| endonuclease [Streptomyces tsukubaensis NRRL18488]
Length = 178
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE ++S P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLENKALCLEESGAFLHSATRVIAAPSVVRLKRFVRVPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+RK L RD C YC ++DHV+P SRGG+ W+N+VAAC +CN K
Sbjct: 65 RGPVP--LTRKALFARDGGRCMYCGGVAT-SVDHVIPRSRGGKHVWDNVVAACRRCNHVK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ L E +L+ P P
Sbjct: 122 ADRHLRELGWRLTHQPAPP 140
>gi|86158328|ref|YP_465113.1| HNH endonuclease [Anaeromyxobacter dehalogenans 2CP-C]
gi|85774839|gb|ABC81676.1| HNH endonuclease [Anaeromyxobacter dehalogenans 2CP-C]
Length = 204
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 88/188 (46%), Gaps = 27/188 (14%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPA------------ 148
LVL+ Y+PV++ +RA L + A L+ Q + + S A
Sbjct: 13 LVLNRVYQPVHITSVRRAFTLLYQGVAKALDEQFQLFDFESWSALAAAAGQDSVGTVGRR 72
Query: 149 --VLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGE 203
V RV LL R + SR N+ RD TCQYC R L +DHVVP SRGG
Sbjct: 73 IRVPRVIVLLAYEHLPRARVRFSRFNIYARDENTCQYCGRRFRRAELNLDHVVPRSRGGS 132
Query: 204 WKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGT 263
WEN+V +C +CN RKG +T EEA M+L R P P+ P + R R+
Sbjct: 133 TTWENVVCSCVRCNLRKGGRTPEEAGMRLLRQPARPR-----WTPTFRS-----RARRAL 182
Query: 264 PVEWRQYL 271
EWR +L
Sbjct: 183 YREWRPFL 190
>gi|365884463|ref|ZP_09423507.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 375]
gi|365286967|emb|CCD96038.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 375]
Length = 178
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 79/145 (54%), Gaps = 12/145 (8%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P++V W+ AI V+ YD+ + SP+ + +P+V+ +R + R +
Sbjct: 17 LSYFPLSVFSWENAIRAVVSGSHVVVAEYDRVVRSPSVTMRLPSVIALRDYV----RPAM 72
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRE---NLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
+ +R N+ RD F CQYC R LT DHVVP + GGE W N+VAAC CN+RK
Sbjct: 73 RVPFTRFNVFLRDRFECQYCGGRYLHGELTFDHVVPRADGGETSWTNIVAACSPCNARKD 132
Query: 222 KKTLEEANMQLSRVPKAPKDYDILA 246
++ LE R P P ++++A
Sbjct: 133 RRHLEPW-----RPPFEPTRHELMA 152
>gi|411005780|ref|ZP_11382109.1| endonuclease [Streptomyces globisporus C-1027]
Length = 178
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE ++S + P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLENKAICLEESGSFLHSATRAVPAPSVVRLKRFVRVPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC + ++DHV+P SRGG W+N+VAAC +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGRCMYCGAAAT-SVDHVIPRSRGGRHAWDNVVAACRRCNHVK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ L E +L P P
Sbjct: 122 ADRHLPELGWRLRHQPAPP 140
>gi|219882593|ref|YP_002477757.1| HNH endonuclease [Arthrobacter chlorophenolicus A6]
gi|219861599|gb|ACL41940.1| HNH endonuclease [Arthrobacter chlorophenolicus A6]
Length = 152
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 83/156 (53%), Gaps = 18/156 (11%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ Y P++ V K AI + A+VL + +P G F P VLR L++ VK
Sbjct: 5 LVLNAGYEPLHRVSLKHAIRMVHRGVAEVL----KDDGAPFGPFLRPVVLR---LIKYVK 57
Query: 161 RR-RIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R + +++ + RD C YC+ + T+DHV+P SRGG W NLV CFKCN R
Sbjct: 58 MSWRTRTTCTKEAVKRRDG-RCAYCTKGKAETVDHVMPQSRGGLNTWLNLVGCCFKCNQR 116
Query: 220 KGKKTLEEANMQLSRVPKAPK---------DYDILA 246
K +T EEA M+L P APK DY ++A
Sbjct: 117 KADRTPEEAGMKLLLTPYAPKARPPLLPDFDYALIA 152
>gi|87311894|ref|ZP_01094006.1| restriction endonuclease [Blastopirellula marina DSM 3645]
gi|87285425|gb|EAQ77347.1| restriction endonuclease [Blastopirellula marina DSM 3645]
Length = 197
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 88/164 (53%), Gaps = 18/164 (10%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKA---DVLEY-------YDQTINSPNGSFYIPAVL 150
LVL+ +++PV V R++ F A D L Y + Q + + + F L
Sbjct: 10 LVLNRNWQPVGVASVARSLTKVFSGTARIVDPLSYQLYDWEDWSQLVPNKDEPFISSQRL 69
Query: 151 RVR--HLLQVVKRRRIKNN---LSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGG 202
++R ++ +V R+ N SR+N+ RDN+TCQYC SR E+LTIDHV+P ++GG
Sbjct: 70 KIRVPEVVTLVNYDRVPRNTVTFSRRNVFKRDNYTCQYCGSRPGSESLTIDHVLPRAQGG 129
Query: 203 EWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILA 246
E WEN V AC +CN K +T +A M L +P P+ + A
Sbjct: 130 ESSWENCVLACVECNHSKANRTPLQARMPLHSIPVRPRWSPVYA 173
>gi|226226052|ref|YP_002760158.1| hypothetical protein GAU_0646 [Gemmatimonas aurantiaca T-27]
gi|226089243|dbj|BAH37688.1| hypothetical protein GAU_0646 [Gemmatimonas aurantiaca T-27]
Length = 195
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 79/147 (53%), Gaps = 10/147 (6%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT-INSPNGSFYIPAVLRVRHLLQVV 159
L L+ SY P+ +V +RA+ L KA+++E + S +F PAV+R+ + V
Sbjct: 6 LALNASYEPLTMVPLRRALRLVIDGKAEIVEAERGVPVRSEKRAFPRPAVIRLTRFVHVP 65
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCS-------SRENLTIDHVVPASRGGEWKWENLVAA 212
RR + ++ L RD++ CQYC +RE+LT DH++P SRGG +W N+V A
Sbjct: 66 --RRFRRQVTNTFLFARDDYQCQYCGRRSNELKTRESLTRDHLIPMSRGGTNEWSNVVTA 123
Query: 213 CFKCNSRKGKKTLEEANMQLSRVPKAP 239
C CN+RK + E M VP P
Sbjct: 124 CSSCNTRKANRLPAEIGMVPLHVPTEP 150
>gi|197122380|ref|YP_002134331.1| HNH endonuclease [Anaeromyxobacter sp. K]
gi|220917162|ref|YP_002492466.1| HNH endonuclease [Anaeromyxobacter dehalogenans 2CP-1]
gi|196172229|gb|ACG73202.1| HNH endonuclease [Anaeromyxobacter sp. K]
gi|219955016|gb|ACL65400.1| HNH endonuclease [Anaeromyxobacter dehalogenans 2CP-1]
Length = 198
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 88/188 (46%), Gaps = 27/188 (14%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPA------------ 148
LVL+ Y+PV++ +RA L + A L+ Q + + S A
Sbjct: 7 LVLNRVYQPVHITSVRRAFTLLYQGVAKALDEQFQLFDFESWSALAAAADHDSIGTVGRR 66
Query: 149 --VLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGE 203
V RV LL R + SR N+ RD TCQYC R L +DHVVP SRGG
Sbjct: 67 IRVPRVIVLLAYEHLPRARVRFSRFNIYARDENTCQYCGRRFRRAELNLDHVVPRSRGGS 126
Query: 204 WKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGT 263
WEN+V +C +CN RKG +T EEA M+L R P P+ + R R R+
Sbjct: 127 TNWENVVCSCVRCNLRKGGRTPEEAGMRLLRQPTRPR---------WTPTFRS-RARRAL 176
Query: 264 PVEWRQYL 271
EWR +L
Sbjct: 177 YREWRPFL 184
>gi|440695296|ref|ZP_20877843.1| HNH endonuclease domain protein [Streptomyces turgidiscabies Car8]
gi|440282591|gb|ELP70022.1| HNH endonuclease domain protein [Streptomyces turgidiscabies Car8]
Length = 178
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 78/139 (56%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE ++S + P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLENKAVSLEESGAFLHSATVTVPAPSVVRLKRFVRVPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC + ++DHV+P SRGG+ +W+N+VA+C +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGRCMYCGAAAT-SVDHVIPRSRGGQHRWDNVVASCRRCNHTK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ L E +L P P
Sbjct: 122 ADRHLFEIGWRLRHKPAPP 140
>gi|256371485|ref|YP_003109309.1| HNH endonuclease [Acidimicrobium ferrooxidans DSM 10331]
gi|256008069|gb|ACU53636.1| HNH endonuclease [Acidimicrobium ferrooxidans DSM 10331]
Length = 199
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 81/139 (58%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY + VV +RA+ + DV++ D ++SP+ + +P++LR++ +++
Sbjct: 6 LVLNASYEALGVVSVERAVGMVVDGDVDVVDVTDLVLHSPSTAIRVPSILRLQRYVRIPA 65
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
RRI +R+ + RD + CQYC +DHV+P SRGG WEN+VAAC CN+ K
Sbjct: 66 TRRIAP--TRRAIFARDGYRCQYCGGPAE-NVDHVIPRSRGGRHVWENVVAACRACNAAK 122
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ EA M R P+AP
Sbjct: 123 SDRLPAEAGMHPRREPRAP 141
>gi|383641183|ref|ZP_09953589.1| endonuclease [Streptomyces chartreusis NRRL 12338]
Length = 168
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 82/151 (54%), Gaps = 6/151 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPA--VLRVRHLLQV 158
LVL+ S+ P++ V RA+ L +KA V+E + + IPA V+R+ ++V
Sbjct: 5 LVLNASFEPLSTVTLNRAVVLVLQDKA-VVEQAHPELRMRGAAVDIPAPRVIRLCQYVRV 63
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
RRR SR+ ++ RD C YC R T+DHVVP S+GG+ W N VA+C + N
Sbjct: 64 PFRRRAP--WSRRGVLVRDRHRCAYCGRRAT-TVDHVVPRSQGGQDTWLNTVASCAQDNH 120
Query: 219 RKGKKTLEEANMQLSRVPKAPKDYDILAIPL 249
RK +T EEA M L R P P D + + L
Sbjct: 121 RKANRTPEEAGMPLLRQPFEPTPADAMLLAL 151
>gi|220908210|ref|YP_002483521.1| HNH endonuclease [Cyanothece sp. PCC 7425]
gi|219864821|gb|ACL45160.1| HNH endonuclease [Cyanothece sp. PCC 7425]
Length = 177
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 79/148 (53%), Gaps = 7/148 (4%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT---INSPNGSFYIPAVLRVRHLLQ 157
+V +Y P+ V KRAI L +A+ L++ + SP+ IP +R L
Sbjct: 18 VVFSKNYLPLTRVNLKRAIVLLITGQAESLDFSGTQQWEVRSPSLVLQIPEHIR---LTS 74
Query: 158 VVKRRRIK-NNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
R K ++R+ ++ RD+ TCQYC S ++LT+DH++P S+GG W+N+V AC C
Sbjct: 75 GNPERHWKVPAVNRREVLRRDHHTCQYCGSTKHLTLDHIIPRSKGGTHTWDNVVTACESC 134
Query: 217 NSRKGKKTLEEANMQLSRVPKAPKDYDI 244
N KG + L E M L PKAP I
Sbjct: 135 NLAKGDRLLHETGMVLRTKPKAPMHPTI 162
>gi|326441189|ref|ZP_08215923.1| endonuclease [Streptomyces clavuligerus ATCC 27064]
Length = 178
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 74/139 (53%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE ++S P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLENKALCLEESGAFLHSATRIIAAPSVVRLKRFVRVPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+RK L RD C YC ++DHV+P SRGG+ W+N+VAAC CN K
Sbjct: 65 RGPVP--LTRKALFARDGGRCMYCGGVAT-SVDHVIPRSRGGQHAWDNVVAACRHCNHVK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ L E +L P P
Sbjct: 122 ADRQLRELGWRLRHQPAPP 140
>gi|347758404|ref|YP_004865966.1| HNH endonuclease family protein [Micavibrio aeruginosavorus ARL-13]
gi|347590922|gb|AEP09964.1| HNH endonuclease family protein [Micavibrio aeruginosavorus ARL-13]
Length = 189
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 75/143 (52%), Gaps = 7/143 (4%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P+++ W+ AI F E V+ Y++ I+SP+ +P+VL ++ + + +
Sbjct: 22 LSYFPLSLWSWQDAIKAIFRESVVVVSEYERVISSPSHQMRLPSVLALKEYVPMER---- 77
Query: 165 KNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
+R N+ RD F CQYC + LT DHV+P SRGG W+N+V AC CN KG
Sbjct: 78 APAFTRFNVFLRDGFECQYCGDTFRTQELTFDHVIPRSRGGRTTWDNIVTACQGCNLAKG 137
Query: 222 KKTLEEANMQLSRVPKAPKDYDI 244
T E M P P +++
Sbjct: 138 SMTPRECGMFPMTDPVQPSIFEL 160
>gi|283780771|ref|YP_003371526.1| HNH endonuclease [Pirellula staleyi DSM 6068]
gi|283439224|gb|ADB17666.1| HNH endonuclease [Pirellula staleyi DSM 6068]
Length = 220
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 89/171 (52%), Gaps = 26/171 (15%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEY-------YDQTINSPNGSF--------- 144
LVL+ SYR V++V +RA + F E A+V+ YD T F
Sbjct: 21 LVLNRSYRAVHIVSVRRAFIMLFRECAEVIHTEDGSYTNYDFTTWCEISEFQAQEKRPHD 80
Query: 145 -YIPAV---LRVRHLLQVVKRRRIKNN---LSRKNLMYRDNFTCQYCSSR---ENLTIDH 194
++ AV + V +++++ RI +R+ + RD CQYC R + L++DH
Sbjct: 81 DWVKAVQFEILVPRIIRLIDYDRIPEREVRYNRRQIFARDGNKCQYCGKRLPVQQLSLDH 140
Query: 195 VVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDIL 245
V+P SRGGE WEN+V +C CN+RKG +T +EA+M L P+ P +L
Sbjct: 141 VMPRSRGGESSWENVVCSCLTCNTRKGGRTPQEAHMNLMTTPREPATNPLL 191
>gi|300868012|ref|ZP_07112651.1| HNH endonuclease domain-containing protein [Oscillatoria sp. PCC
6506]
gi|300334033|emb|CBN57829.1| HNH endonuclease domain-containing protein [Oscillatoria sp. PCC
6506]
Length = 172
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 82/144 (56%), Gaps = 9/144 (6%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT---INSPNGSFYIPAVLRVRHLLQ 157
+V +Y P++ + KRAI L KA+ L++ + SP+ + +P +R L
Sbjct: 13 VVFSRNYLPMSRINIKRAIALLVAGKAEPLDFATGNGWIVRSPSFAICVPEQIR----LT 68
Query: 158 VVKRRRIKN--NLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFK 215
RI ++R+ ++ RD+ +CQYC S + LT+DHV+P ++GG W+N+V AC K
Sbjct: 69 FTSNERIWKVPPVNRREVLRRDSHSCQYCGSNKRLTLDHVMPRAQGGGHTWDNIVTACEK 128
Query: 216 CNSRKGKKTLEEANMQLSRVPKAP 239
CNS KG +T +A M L PKAP
Sbjct: 129 CNSLKGDRTPLQAGMPLRTKPKAP 152
>gi|427726396|ref|YP_007053080.1| restriction endonuclease [Nostoc sp. PCC 7524]
gi|427368565|gb|AFY51285.1| restriction endonuclease [Nostoc sp. PCC 7524]
Length = 178
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 79/142 (55%), Gaps = 5/142 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT---INSPNGSFYIPAVLRVRHLLQ 157
+V +Y P+ + KRAI L +A+ L + + SP+ +P +R+ +
Sbjct: 18 VVFSKNYLPLARINIKRAIVLLVTGQAESLNFGTTKQWEVRSPSVVLQVPEHIRL--TVG 75
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
+R ++R+ ++ RDN TCQYC S ++LT+DHV+P S+GG+ W+N+V AC KCN
Sbjct: 76 NPERHWKVPPVNRREVLRRDNHTCQYCGSTKHLTLDHVIPRSKGGQHTWDNVVTACEKCN 135
Query: 218 SRKGKKTLEEANMQLSRVPKAP 239
S K + E M L PKAP
Sbjct: 136 STKSDRLPHETGMVLKTKPKAP 157
>gi|408678157|ref|YP_006877984.1| HNH endonuclease family protein [Streptomyces venezuelae ATCC
10712]
gi|328882486|emb|CCA55725.1| HNH endonuclease family protein [Streptomyces venezuelae ATCC
10712]
Length = 187
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 75/139 (53%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE ++S P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLENKALCLEESGAFLHSETQVVPAPSVVRLKRFVRVPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC + ++DHV+P SRGG WEN+VAAC +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGRCMYCGAVAT-SVDHVIPRSRGGTHAWENVVAACRRCNHVK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ L E +L P P
Sbjct: 122 ADRHLREIGWRLRHQPAPP 140
>gi|408826137|ref|ZP_11211027.1| HNH endonuclease [Streptomyces somaliensis DSM 40738]
Length = 173
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT-INSPNGSFYIPAVLRVRHLLQVV 159
LVL+ S+ P++ V RA+ L +KA V + + + + + +P V+R+ ++V
Sbjct: 5 LVLNASFEPLSTVSLHRAVVLVLQDKAVVEQAHPELRLRAAQVELPVPRVIRLCRYVRVP 64
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
RR SR+ ++ RD + C YC R T+DHVVP S+GG W N VA+C + N R
Sbjct: 65 FRR--HAPWSRRGVLVRDQYRCAYCGRRAT-TVDHVVPRSQGGADSWLNTVASCAEDNHR 121
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTS 251
K +T EEA+M L R P P D + + L +
Sbjct: 122 KADRTPEEADMPLLRRPFVPSPADAMLLALRA 153
>gi|258652048|ref|YP_003201204.1| HNH endonuclease [Nakamurella multipartita DSM 44233]
gi|258555273|gb|ACV78215.1| HNH endonuclease [Nakamurella multipartita DSM 44233]
Length = 200
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 84/156 (53%), Gaps = 4/156 (2%)
Query: 86 YDSDEEFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKAD-VLEYYDQTINSPNGSF 144
+ E +A R L+L+ S+ P+ VV +RA+ L KA+ V+E + SP+ +
Sbjct: 23 HREPEPGRPVAVLRVLLLNASHEPLAVVTGRRALVLVVAGKAECVVERPSGLVRSPSVAL 82
Query: 145 YIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEW 204
+PAV+R+ V ++R ++ RD C YC +R + T+DHV+P SRGG
Sbjct: 83 AVPAVVRL--RRYVRVPYPAPPAVTRAGVLKRDGRRCAYCQARAD-TVDHVLPRSRGGGH 139
Query: 205 KWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPK 240
WEN VA C +CN+RK + LEE LS P P+
Sbjct: 140 TWENCVACCARCNARKADRLLEELGWALSITPGPPR 175
>gi|318079825|ref|ZP_07987157.1| hypothetical protein SSA3_24861 [Streptomyces sp. SA3_actF]
Length = 225
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 76/136 (55%), Gaps = 3/136 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE ++S + + P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLENKAQCLEETGAFLHSASRTVPAPSVVRLKRYVRVPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC S ++DHVVP SRGG W+N+VA+C +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGKCAYCGSVAT-SVDHVVPRSRGGRHAWDNVVASCRRCNHTK 121
Query: 221 GKKTLEEANMQLSRVP 236
+ L + +L P
Sbjct: 122 ADRYLADLGWRLRHAP 137
>gi|254387152|ref|ZP_05002422.1| endonuclease [Streptomyces sp. Mg1]
gi|194345967|gb|EDX26933.1| endonuclease [Streptomyces sp. Mg1]
Length = 178
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE ++S + P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLENKAVSLEESGAFLHSATRAVPAPSVVRLKRFVRVPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC ++DHV+P SRGG+ W+N+VAAC +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGRCMYCGGVAT-SVDHVIPRSRGGQHAWDNVVAACRRCNHVK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ L E +L P P
Sbjct: 122 ADRHLLELGWRLRHQPAPP 140
>gi|395772070|ref|ZP_10452585.1| endonuclease [Streptomyces acidiscabies 84-104]
Length = 178
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE ++S + P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLENKAVSLEDSGAYLHSATVTVSAPSVVRLKRFVRVPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC ++DHV+P SRGG+ W+N+VA+C +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGRCMYCGGVAT-SVDHVIPRSRGGQHAWDNVVASCRRCNHTK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ L E +L P P
Sbjct: 122 ADRHLTEIGWRLRHKPAPP 140
>gi|332669292|ref|YP_004452300.1| HNH endonuclease [Cellulomonas fimi ATCC 484]
gi|332338330|gb|AEE44913.1| HNH endonuclease [Cellulomonas fimi ATCC 484]
Length = 149
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 77/147 (52%), Gaps = 4/147 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLR-VRHLLQVV 159
LVL+ Y P+ V A+ + + A V + + + P + +PAVLR VR++
Sbjct: 5 LVLNAGYEPLQRVSLAHAVRMLHRQVAVVEQAVEGRMFGP---YPLPAVLRLVRYVQMRW 61
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ SR L+ RD TC YC +R T+DHV P SRGG W N V AC +CN+R
Sbjct: 62 RHAHGAPQWSRTGLLLRDGRTCAYCGARGADTVDHVRPRSRGGADSWLNTVTACGRCNNR 121
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILA 246
K +T EEA M+L P+ P ++L
Sbjct: 122 KRDRTPEEAGMRLRYAPRVPTFAELLG 148
>gi|418467315|ref|ZP_13038204.1| hypothetical protein SMCF_1082 [Streptomyces coelicoflavus ZG0656]
gi|371552099|gb|EHN79358.1| hypothetical protein SMCF_1082 [Streptomyces coelicoflavus ZG0656]
Length = 168
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 82/152 (53%), Gaps = 6/152 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPA--VLRVRHLLQV 158
LVL+ S+ P++ V RA+ L +KA V+E ++ + IPA V+R+ ++V
Sbjct: 5 LVLNASFEPLSTVTLNRAVVLVLQDKA-VVEQAHPSLRMRGAALDIPAPRVIRLCQYVRV 63
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
RRR SR+ ++ RD C YC R T+DHVVP S GG+ W N VA+C + N
Sbjct: 64 PFRRRAP--WSRRGVLVRDRHRCAYCGRRAT-TVDHVVPRSHGGQDTWLNTVASCAEDNH 120
Query: 219 RKGKKTLEEANMQLSRVPKAPKDYDILAIPLT 250
RK +T E+A M L R P P D + + L
Sbjct: 121 RKANRTPEQAGMPLLREPFEPTPADAMLLALA 152
>gi|21220286|ref|NP_626065.1| hypothetical protein SCO1795 [Streptomyces coelicolor A3(2)]
gi|289772487|ref|ZP_06531865.1| endonuclease [Streptomyces lividans TK24]
gi|5123531|emb|CAB45287.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
gi|289702686|gb|EFD70115.1| endonuclease [Streptomyces lividans TK24]
Length = 168
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 82/152 (53%), Gaps = 6/152 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPA--VLRVRHLLQV 158
LVL+ S+ P++ V RA+ L +KA V+E ++ + IPA V+R+ ++V
Sbjct: 5 LVLNASFEPLSTVTLNRAVVLVLQDKA-VVEQAHPSLRMRGAALDIPAPRVIRLCQYVRV 63
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
RRR SR+ ++ RD C YC R T+DHVVP S GG+ W N VA+C + N
Sbjct: 64 PFRRRAP--WSRRGVLVRDRHRCAYCGRRAT-TVDHVVPRSHGGQDTWLNTVASCAEDNH 120
Query: 219 RKGKKTLEEANMQLSRVPKAPKDYDILAIPLT 250
RK +T E+A M L R P P D + + L
Sbjct: 121 RKANRTPEQAGMPLLRKPFEPTPADAMLLALA 152
>gi|153004816|ref|YP_001379141.1| HNH endonuclease [Anaeromyxobacter sp. Fw109-5]
gi|152028389|gb|ABS26157.1| HNH endonuclease [Anaeromyxobacter sp. Fw109-5]
Length = 197
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 89/187 (47%), Gaps = 26/187 (13%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPA------------ 148
LVL+ Y+PV+V +RA L + A ++ Q + + S A
Sbjct: 7 LVLNRVYQPVHVTSVRRAFTLLYQGVARAIDEQFQLFDFASWSELAAAEHDSVGTVTRRI 66
Query: 149 -VLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEW 204
V RV LL + + SR N+ RD+ TCQYC R L +DHVVP SRGG
Sbjct: 67 RVPRVIVLLAYDHLPKGRVRFSRFNIYARDDNTCQYCGGRFRRAELNLDHVVPRSRGGST 126
Query: 205 KWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTP 264
WEN+V +C CN RKG +T EEA M+L R P P+ P+ +A R R
Sbjct: 127 TWENVVCSCVSCNLRKGGRTPEEARMRLLRAPTRPR-----WTPVFRSAARRALYR---- 177
Query: 265 VEWRQYL 271
EWR +L
Sbjct: 178 -EWRPFL 183
>gi|299116958|emb|CBN75062.1| HNH endonuclease family protein [Ectocarpus siliculosus]
Length = 332
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 79/142 (55%), Gaps = 10/142 (7%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYY-DQTINSPNGSFYIPAVLRVRHLLQVVKRRR 163
+SY P+++ W+ I F EK VL Y D+++ SP+ +P+V+ ++ + V R
Sbjct: 150 LSYLPLSLWGWQDVIKAVFSEKVVVLATYGDRSVRSPSVVVQLPSVIALK---EFVNNHR 206
Query: 164 IKNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
+R+NL RD+ CQYC + NL+ DHVVP GG+ W+N+V AC +CN+RK
Sbjct: 207 THPPFTRRNLFLRDSHQCQYCQKYFAPHNLSFDHVVPKKLGGKGTWDNVVTACGRCNNRK 266
Query: 221 GK---KTLEEANMQLSRVPKAP 239
+ L+ M L++ P P
Sbjct: 267 SDCHPRDLKSIGMSLAKYPVTP 288
>gi|374989835|ref|YP_004965330.1| endonuclease [Streptomyces bingchenggensis BCW-1]
gi|297160487|gb|ADI10199.1| endonuclease [Streptomyces bingchenggensis BCW-1]
Length = 178
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L +KA LE ++S P+V+R++ +++
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLNDKAVSLEDSGALMHSATRVIPAPSVVRLKRFVRMPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC ++DHV+P SRGG+ WEN+VAAC +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGRCAYCGGVAT-SVDHVIPRSRGGQHTWENVVAACRRCNHVK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ + E +L P P
Sbjct: 122 ADRHVAEIGWRLRHQPAPP 140
>gi|323455333|gb|EGB11201.1| hypothetical protein AURANDRAFT_15531, partial [Aureococcus
anophagefferens]
Length = 160
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 82/149 (55%), Gaps = 11/149 (7%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+S+ P++V W+ AI + + DV+ +D TI S + SF +P+V+ +R+ + R I
Sbjct: 11 LSFLPLSVWSWQDAIKAAWQGRVDVVAEHDVTIRSASASFAVPSVVVLRNY----EPRSI 66
Query: 165 KN-NLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
K S++ L+ RD + CQYC R LT DHV+P + GG+ W+N+VA+C CN +K
Sbjct: 67 KAPRYSKRLLLLRDGYCCQYCRQRFHSSQLTADHVIPRAAGGKSSWDNVVASCMPCNHKK 126
Query: 221 GK---KTLEEANMQLSRVPKAPKDYDILA 246
G L+ M + P P Y + A
Sbjct: 127 GSLPPNKLKHVGMTRADDPFEPSAYQLEA 155
>gi|329934522|ref|ZP_08284563.1| HNH endonuclease family protein [Streptomyces griseoaurantiacus
M045]
gi|329305344|gb|EGG49200.1| HNH endonuclease family protein [Streptomyces griseoaurantiacus
M045]
Length = 178
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE ++S + P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLENKAVSLEESGAFLHSATVTVPAPSVVRLKRFVRVPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC ++DHVVP SRGG+ W+N+VA+C +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGRCMYCGGVAT-SVDHVVPRSRGGQHAWDNVVASCRRCNHVK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ L E +L P P
Sbjct: 122 ADRHLVELGWRLRHKPAPP 140
>gi|220911690|ref|YP_002486999.1| HNH endonuclease [Arthrobacter chlorophenolicus A6]
gi|219858568|gb|ACL38910.1| HNH endonuclease [Arthrobacter chlorophenolicus A6]
Length = 166
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 98 FRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQ 157
R LVL+ Y P+ V+ ++RA+ L KA V+ D + P P+V+ + ++
Sbjct: 1 MRTLVLNAGYEPLAVITFRRALVLVLTGKASVVAEGDDPVVGPQEILGRPSVILLNRYIR 60
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
+ +SR+ ++ RD C YC + TIDHV P SRGG WENLVAAC +CN
Sbjct: 61 --PKYNHATAVSRRGVLRRDGHKCAYCGKAAH-TIDHVHPKSRGGVDSWENLVAACLRCN 117
Query: 218 SRKGKKTLEEANMQLSRVPKAP 239
+ KG T E +L P P
Sbjct: 118 NVKGDHTPAEMGWKLRFEPAQP 139
>gi|386839334|ref|YP_006244392.1| endonuclease [Streptomyces hygroscopicus subsp. jinggangensis 5008]
gi|374099635|gb|AEY88519.1| endonuclease [Streptomyces hygroscopicus subsp. jinggangensis 5008]
gi|451792627|gb|AGF62676.1| endonuclease [Streptomyces hygroscopicus subsp. jinggangensis TL01]
Length = 168
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 81/151 (53%), Gaps = 6/151 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPA--VLRVRHLLQV 158
LVL+ S+ P++ V RA+ L +KA V+E + IPA V+R+ ++V
Sbjct: 5 LVLNASFEPLSTVTLNRAVVLVLQDKA-VVEQAHPELRMRGADVDIPAPRVIRLCRYVRV 63
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
RR + SR+ ++ RD C YC R T+DHVVP S+GG+ W N VAAC + N
Sbjct: 64 PFRR--QAPWSRRGVLVRDRHRCAYCGRRAT-TVDHVVPRSQGGQDTWLNTVAACAEDNH 120
Query: 219 RKGKKTLEEANMQLSRVPKAPKDYDILAIPL 249
RK +T EEA M L R P P D + + L
Sbjct: 121 RKANRTPEEAGMALLREPFEPTPADAMLLAL 151
>gi|440701363|ref|ZP_20883557.1| HNH endonuclease domain protein [Streptomyces turgidiscabies Car8]
gi|440275991|gb|ELP64325.1| HNH endonuclease domain protein [Streptomyces turgidiscabies Car8]
Length = 168
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 83/151 (54%), Gaps = 6/151 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPA--VLRVRHLLQV 158
LVL+ S+ P++ V RA+ L +KA V+E I + IPA V+R+ ++V
Sbjct: 5 LVLNASFEPLSTVTLNRAVVLVLQDKA-VVEQAHPEIRMRGAAVDIPAPRVIRLCRYVRV 63
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
RR + SR+ ++ RD C YC R T+DHVVP ++GG+ W N VA+C + N
Sbjct: 64 PFRR--QAPWSRRGVLVRDRHKCAYCGRRAT-TVDHVVPRAQGGQDSWLNTVASCAEDNH 120
Query: 219 RKGKKTLEEANMQLSRVPKAPKDYDILAIPL 249
RK +T E+A M L R+P P D + + L
Sbjct: 121 RKAARTPEQAGMPLLRLPFEPSPADAMLLAL 151
>gi|294055845|ref|YP_003549503.1| HNH endonuclease [Coraliomargarita akajimensis DSM 45221]
gi|293615178|gb|ADE55333.1| HNH endonuclease [Coraliomargarita akajimensis DSM 45221]
Length = 200
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 86/167 (51%), Gaps = 24/167 (14%)
Query: 98 FRGLVLDISYRPVNVVCWKRAICL----------------EFMEKADVLEYYDQTINSPN 141
+R LVL+ ++PVN++ +RA L + M A+ L+Y + + N
Sbjct: 7 YRVLVLNRLWQPVNIIGVQRAFSLLLQDHAQAINTRDGQFQMMSSAEWLDYCESDVPEAN 66
Query: 142 GSFYIPAVLRVR----HLLQVVKRRRIKN-NLSRKNLMYRDNFTCQYCSSR---ENLTID 193
++ LR+R LL+ + ++ +R+NL RDN+ CQYC L +D
Sbjct: 67 EAYLQTVKLRIRVPKVLLLREYSKLPVQEVKFTRENLFERDNYRCQYCGDSFEALELNMD 126
Query: 194 HVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPK 240
HV+P +GG WEN+V +C +CNSRK + +A+M L R P+ P+
Sbjct: 127 HVIPRDKGGRTSWENIVTSCIQCNSRKANRLPHQASMHLIRKPERPR 173
>gi|290960326|ref|YP_003491508.1| HNH endonuclease [Streptomyces scabiei 87.22]
gi|260649852|emb|CBG72968.1| putative HNH endonuclease [Streptomyces scabiei 87.22]
Length = 178
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE ++S + P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLENKAVSLEESGAYLHSATVTVPAPSVVRLKRFVRVPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC ++DHV+P SRGG+ W+N+VA+C +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGRCMYCGGVAT-SVDHVIPRSRGGKHVWDNVVASCRRCNHVK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ L E +L P P
Sbjct: 122 ADRHLVEIGWRLRHAPAPP 140
>gi|367474819|ref|ZP_09474312.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 285]
gi|365272902|emb|CCD86780.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 285]
Length = 178
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 79/145 (54%), Gaps = 12/145 (8%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
+SY P++VV W+ AI V+ YD+ + SP+ + +P+V+ +R + R +
Sbjct: 17 LSYFPLSVVSWEDAIRAVVSGSHVVVAEYDRVVRSPSVTMRLPSVVALRDYV----RPAM 72
Query: 165 KNNLSRKNLMYRDNFTCQYCSSRE---NLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
+ +R N+ RD F CQYC R LT DHVVP GGE W N+VAAC CN+RK
Sbjct: 73 RVPFTRFNVFLRDRFECQYCGGRYLHGELTFDHVVPRVDGGETSWTNIVAACSPCNARKD 132
Query: 222 KKTLEEANMQLSRVPKAPKDYDILA 246
++ ++ R P P ++++A
Sbjct: 133 RRYVKP-----RRSPFEPTRHELMA 152
>gi|406830582|ref|ZP_11090176.1| HNH endonuclease [Schlesneria paludicola DSM 18645]
Length = 203
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 89/178 (50%), Gaps = 27/178 (15%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYD------------------QTINSPNG 142
L L+ Y PV+V+ RA CL + A+V+ D Q ++
Sbjct: 14 LALNRHYVPVHVLSVSRAFCLLYKGAAEVISVDDGTFYSYDFDNWREVGLLKQALDDIQD 73
Query: 143 SFYIPAV---LRVRHLLQVVKRRRIKNN---LSRKNLMYRDNFTCQYCSSR---ENLTID 193
+ +I AV ++V ++++++ R+ N +R+N+ RD CQYC R +L++D
Sbjct: 74 TDWIRAVNFEIQVPRIVRLLRYDRLPRNGVKFNRRNIFLRDENRCQYCGKRFGAHSLSLD 133
Query: 194 HVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTS 251
HV+P SRGG WEN+V C CN RKG +T EA M+L + P P +L L S
Sbjct: 134 HVMPRSRGGPTTWENIVCCCLDCNVRKGGRTPYEAGMKLMKAPHKPARNPLLFHHLNS 191
>gi|223940213|ref|ZP_03632073.1| HNH endonuclease [bacterium Ellin514]
gi|223891100|gb|EEF57601.1| HNH endonuclease [bacterium Ellin514]
Length = 207
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 82/162 (50%), Gaps = 22/162 (13%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADV-LEYYD---QTIN------------SPNGSF 144
LVL+ ++ VN+ +RA+ L F A V L+ D QT N P
Sbjct: 10 LVLNRLWQAVNICTARRALTLLFEGHAHVVLDGQDGSFQTFNFSQWQDFSEQQPHPESIH 69
Query: 145 YIPAVLRVRHLLQVVKRRRIKNN---LSRKNLMYRDNFTCQYCSS---RENLTIDHVVPA 198
I +RV ++ +V R+ +R N+ RDN TCQYC + R++L +DHV+P
Sbjct: 70 TISFKIRVPRVILLVMFDRLPKKEVKFTRHNIFERDNNTCQYCGTVFDRKDLNLDHVIPR 129
Query: 199 SRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPK 240
RGG WEN+V +C CN+RK T EA M L R PK PK
Sbjct: 130 DRGGPTTWENIVCSCIPCNTRKANHTPYEAGMHLIRKPKRPK 171
>gi|427719575|ref|YP_007067569.1| HNH endonuclease [Calothrix sp. PCC 7507]
gi|427352011|gb|AFY34735.1| HNH endonuclease [Calothrix sp. PCC 7507]
Length = 172
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 80/144 (55%), Gaps = 9/144 (6%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT---INSPNGSFYIPAVLRVRHLLQ 157
+V +Y P+ V KRAI L KA+ L + ++SP+ +P +R L
Sbjct: 13 VVFSQNYLPLCRVNIKRAIVLLVSNKAEPLGFSTAGGWRVHSPSLVLDVPKHIR----LT 68
Query: 158 VVKRRRIKN--NLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFK 215
+ R+ ++R+ ++ RD+ +CQYC S + LT+DHV+P S+GG W N+V AC +
Sbjct: 69 ITSGERMWKVPPVNRREVLRRDHNSCQYCGSNKRLTLDHVIPRSQGGPHTWNNVVTACER 128
Query: 216 CNSRKGKKTLEEANMQLSRVPKAP 239
CNS K +T EA MQL PKAP
Sbjct: 129 CNSHKSNRTPFEAGMQLRTKPKAP 152
>gi|374990955|ref|YP_004966450.1| endonuclease [Streptomyces bingchenggensis BCW-1]
gi|297161607|gb|ADI11319.1| endonuclease [Streptomyces bingchenggensis BCW-1]
Length = 167
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 88/169 (52%), Gaps = 13/169 (7%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQ--TINSPNGSFYIPAVLRVRHLLQV 158
LVL+ S+ P++ V +RA+ L KA V+E+ + + + +P V+R+ ++V
Sbjct: 5 LVLNASFEPLSAVSLRRAVVLVLQNKA-VIEHAHPGLRVRAADVDLPVPLVIRLCRYVRV 63
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
RRR SR+ ++ RD C YC R T+DHVVP S GG W N VA+C + N
Sbjct: 64 PFRRRAP--WSRRGVLVRDRHRCAYCGRRAT-TVDHVVPRSHGGGDTWLNTVASCAEDNH 120
Query: 219 RKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEW 267
RK +T E+A M+L P P D L + L A R+G P EW
Sbjct: 121 RKADRTPEQAGMRLLNAPFEPTPSDALLLALGVAE------REGLP-EW 162
>gi|429194700|ref|ZP_19186780.1| HNH endonuclease domain protein [Streptomyces ipomoeae 91-03]
gi|428669587|gb|EKX68530.1| HNH endonuclease domain protein [Streptomyces ipomoeae 91-03]
Length = 168
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 82/151 (54%), Gaps = 6/151 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPA--VLRVRHLLQV 158
LVL+ S+ P++ V RA+ L +KA V+E + + IPA V+R+ ++V
Sbjct: 5 LVLNASFEPLSTVTLNRAVVLVLQDKA-VVEQTHPELRMRGAAVDIPAPRVIRLCRYVRV 63
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
RR + SR+ ++ RD C YC R T+DH+VP S+GG+ W N VA+C + N
Sbjct: 64 PFRR--QAPWSRRGVLVRDRHRCAYCGRRAT-TVDHIVPRSQGGQDSWLNTVASCAEDNH 120
Query: 219 RKGKKTLEEANMQLSRVPKAPKDYDILAIPL 249
RK +T EEA M L R P P D + + L
Sbjct: 121 RKANRTPEEAGMPLLRQPFEPTPADAMLLAL 151
>gi|119488735|ref|ZP_01621744.1| hypothetical protein L8106_23256 [Lyngbya sp. PCC 8106]
gi|119455158|gb|EAW36299.1| hypothetical protein L8106_23256 [Lyngbya sp. PCC 8106]
Length = 150
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 73/130 (56%), Gaps = 10/130 (7%)
Query: 116 KRAICLEFMEKADVLEYYDQT----INSPNGSFYIPAVLRVRHLLQVVKRRRIKN--NLS 169
KRAI L KA+ L+ + SP+ ++P +R L + R+ ++
Sbjct: 7 KRAIALLVTGKAEPLDATKTDSGWFVRSPSIVLHVPEHIR----LTIAGNERLWKVPPVN 62
Query: 170 RKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEAN 229
R+ ++ RD+ CQYC S + LTIDH++P S+GG W+N+ AAC +CNS KG +T EEA
Sbjct: 63 RREILRRDHHKCQYCGSTKRLTIDHILPRSKGGTHTWDNVAAACERCNSLKGDRTPEEAK 122
Query: 230 MQLSRVPKAP 239
M L KAP
Sbjct: 123 MSLRTPAKAP 132
>gi|318062313|ref|ZP_07981034.1| hypothetical protein SSA3_30539 [Streptomyces sp. SA3_actG]
gi|318079208|ref|ZP_07986540.1| hypothetical protein SSA3_21485 [Streptomyces sp. SA3_actF]
gi|333028058|ref|ZP_08456122.1| putative endonuclease [Streptomyces sp. Tu6071]
gi|332747910|gb|EGJ78351.1| putative endonuclease [Streptomyces sp. Tu6071]
Length = 176
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 81/155 (52%), Gaps = 14/155 (9%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADV------LEYYDQTINSPNGSFYIPAVLRVRH 154
LVL+ S+ P++ V RA+ L +KA V L T++ P +P V+R+
Sbjct: 12 LVLNASFEPLSTVTLHRAVVLVLTDKAVVERAHPGLRMRAATLDLP-----VPQVIRLCR 66
Query: 155 LLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACF 214
++V RR + SR+ ++ RD C YC R T+DHVVP SRGG W N VA+C
Sbjct: 67 YVRVPFRR--QAPWSRRGVLVRDRHRCAYCGRRAT-TVDHVVPKSRGGADSWLNTVASCA 123
Query: 215 KCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPL 249
+ N RK +T E+A M L R P P D + + L
Sbjct: 124 EDNHRKADRTPEQAGMPLLRQPFEPTPADAMLLAL 158
>gi|338534541|ref|YP_004667875.1| HNH endonuclease domain-containing protein [Myxococcus fulvus HW-1]
gi|337260637|gb|AEI66797.1| HNH endonuclease domain-containing protein [Myxococcus fulvus HW-1]
Length = 197
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 93/182 (51%), Gaps = 26/182 (14%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVL-------EYYD--------QTINSPNGSFY 145
LVL+ Y+PV+V KRA L ++ A + E+ D I + + +
Sbjct: 7 LVLNRYYQPVHVTSVKRAFSLLYLGVAKAIDSQYRLYEFADWAELSATQDCITTIDRTIR 66
Query: 146 IPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSS---RENLTIDHVVPASRGG 202
+P VL V + R R++ SR N+ RDN TCQYC R L +DHV+P ++GG
Sbjct: 67 VPRVL-VLSAYDHLPRGRVR--FSRLNIYARDNDTCQYCGQNLPRSELNLDHVMPRTQGG 123
Query: 203 EWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKG 262
+ WEN+V +C CN RKG +T E+A+M+L + P P+ PL A R + R+
Sbjct: 124 KTTWENVVCSCVPCNLRKGGRTPEQAHMKLLKKPVRPR-----WTPLFRGATRKVTYREW 178
Query: 263 TP 264
P
Sbjct: 179 LP 180
>gi|294629382|ref|ZP_06707942.1| HNH endonuclease [Streptomyces sp. e14]
gi|292832715|gb|EFF91064.1| HNH endonuclease [Streptomyces sp. e14]
Length = 178
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE ++S + P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLENKAVCLEESGAHLHSATVTVPAPSVVRLKRFVRVPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC ++DHV+P SRGG+ W+N+VA+C +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGRCAYCGGIAT-SVDHVIPRSRGGQHVWDNVVASCRRCNHVK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ L E +L P P
Sbjct: 122 ADRHLVELGWRLRHKPAPP 140
>gi|29831929|ref|NP_826563.1| endonuclease [Streptomyces avermitilis MA-4680]
gi|29609046|dbj|BAC73098.1| putative endonuclease [Streptomyces avermitilis MA-4680]
Length = 178
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE ++S + P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLENKAVCLEESGAFMHSATVTVPAPSVVRLKRFVRVPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC ++DHV+P SRGG+ W+N+VA+C +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGRCMYCGGVAT-SVDHVIPRSRGGQHAWDNVVASCRRCNHVK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ L E +L P P
Sbjct: 122 ADRHLFEIGWRLRHKPAPP 140
>gi|357398597|ref|YP_004910522.1| hypothetical protein SCAT_0995 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|386354635|ref|YP_006052881.1| endonuclease [Streptomyces cattleya NRRL 8057 = DSM 46488]
gi|337765006|emb|CCB73715.1| conserved protein of unknown function [Streptomyces cattleya NRRL
8057 = DSM 46488]
gi|365805143|gb|AEW93359.1| endonuclease [Streptomyces cattleya NRRL 8057 = DSM 46488]
Length = 154
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 78/147 (53%), Gaps = 4/147 (2%)
Query: 100 GLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT-INSPNGSFYIPAVLRVRHLLQV 158
LVL+ SY P++ V +RA+ L KA V + + + S +P V+R+ ++V
Sbjct: 4 ALVLNASYEPLSTVSPRRAVVLVMQGKAVVEQAHPGLRLRSAAVEVEVPRVIRLSRYVRV 63
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
R+R SR+ ++ RD C YC R T+DHVVP SRGG+ W N VAAC N
Sbjct: 64 PFRQRAP--WSRRGVLARDRHRCAYCGRRAT-TVDHVVPRSRGGQDTWLNTVAACAADNH 120
Query: 219 RKGKKTLEEANMQLSRVPKAPKDYDIL 245
RK +T E+A M+L P P D L
Sbjct: 121 RKADRTPEQAGMRLLIRPFEPTPADAL 147
>gi|284990080|ref|YP_003408634.1| HNH endonuclease [Geodermatophilus obscurus DSM 43160]
gi|284063325|gb|ADB74263.1| HNH endonuclease [Geodermatophilus obscurus DSM 43160]
Length = 178
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 92/171 (53%), Gaps = 14/171 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
L+L+ ++ P+ VV +RAI L +KA + + +++ +P V+R+ ++V
Sbjct: 14 LLLNATFEPLCVVSSRRAIVLVLADKAVSVHNAPEEVHAETVVLPVPVVVRLTRYVRVPY 73
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
++ LSR+ + +RD TC YC S +IDHVVP SRGG W+N+VAAC +CN K
Sbjct: 74 PAQVP--LSRRAVFHRDASTCVYCGSSAT-SIDHVVPRSRGGTHTWDNVVAACRRCNHTK 130
Query: 221 GKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
++L E +L P+ P + AA R+L R P WR++L
Sbjct: 131 ADRSLAELGWKLPHPPRTP----------SGAAWRLLGARTVDP-RWREWL 170
>gi|254387060|ref|ZP_05002336.1| endonuclease [Streptomyces sp. Mg1]
gi|194345881|gb|EDX26847.1| endonuclease [Streptomyces sp. Mg1]
Length = 170
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 84/158 (53%), Gaps = 4/158 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT-INSPNGSFYIPAVLRVRHLLQVV 159
LVL+ S+ P++ V RA+ L +KA V + + + + + +P V+R+ ++V
Sbjct: 8 LVLNASFEPLSTVTLNRAVVLVLQDKAVVEQSHPELRVRAATMELPMPRVIRLCRYVRVP 67
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
RR SR+ ++ RD C YC R T+DHV+P ++GG W N VA+C + N R
Sbjct: 68 FRRHAP--WSRRGVLARDQHRCAYCGKRAT-TVDHVLPRAQGGGDTWLNTVASCAEDNHR 124
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRML 257
K +T EEA M L R P P D + + L + A +L
Sbjct: 125 KAARTPEEAGMPLLRKPFVPSPADAMLLALGAGAREVL 162
>gi|158333516|ref|YP_001514688.1| HNH endonuclease family protein [Acaryochloris marina MBIC11017]
gi|158303757|gb|ABW25374.1| HNH endonuclease family protein [Acaryochloris marina MBIC11017]
Length = 172
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 78/142 (54%), Gaps = 5/142 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTI---NSPNGSFYIPAVLRVRHLLQ 157
+V +Y P+ + KRAI L +A+ L++ + + SPN + +R+ L+
Sbjct: 13 VVFSKAYLPLARINIKRAIVLLITGQAESLDFGNTQVWEVRSPNQVLRVSEHIRL--LMG 70
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
+R ++R+ ++ RD CQYC S LT+DHV+P S+GG W+N+VAAC CN
Sbjct: 71 NPERMWKIPPVNRREVLKRDQHRCQYCGSHRRLTLDHVIPRSKGGLHTWDNVVAACEPCN 130
Query: 218 SRKGKKTLEEANMQLSRVPKAP 239
S K +T +A M L PKAP
Sbjct: 131 STKSDRTPTQAGMTLQSKPKAP 152
>gi|302518265|ref|ZP_07270607.1| endonuclease [Streptomyces sp. SPB78]
gi|302427160|gb|EFK98975.1| endonuclease [Streptomyces sp. SPB78]
Length = 169
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 81/155 (52%), Gaps = 14/155 (9%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADV------LEYYDQTINSPNGSFYIPAVLRVRH 154
LVL+ S+ P++ V RA+ L +KA V L T++ P +P V+R+
Sbjct: 5 LVLNASFEPLSTVTLHRAVVLVLTDKAVVERAHPGLRMRAATLDLP-----VPQVIRLCR 59
Query: 155 LLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACF 214
++V RR + SR+ ++ RD C YC R T+DHVVP SRGG W N VA+C
Sbjct: 60 YVRVPFRR--QAPWSRRGVLVRDRHRCAYCGRRAT-TVDHVVPKSRGGADSWLNTVASCA 116
Query: 215 KCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPL 249
+ N RK +T E+A M L R P P D + + L
Sbjct: 117 EDNHRKADRTPEQAGMPLLRQPFEPTPADAMLLAL 151
>gi|386840244|ref|YP_006245302.1| endonuclease [Streptomyces hygroscopicus subsp. jinggangensis 5008]
gi|374100545|gb|AEY89429.1| endonuclease [Streptomyces hygroscopicus subsp. jinggangensis 5008]
gi|451793538|gb|AGF63587.1| endonuclease [Streptomyces hygroscopicus subsp. jinggangensis TL01]
Length = 178
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE ++S + P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLENKAVSLEESGAYMHSATVTLPAPSVVRLKRFVRVPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC ++DHV+P SRGG+ W+N+VA+C +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGRCMYCGGVAT-SVDHVIPRSRGGKHVWDNVVASCRRCNHVK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ L E +L P P
Sbjct: 122 ADRHLVELGWRLRHKPAPP 140
>gi|456390773|gb|EMF56168.1| HNH endonuclease [Streptomyces bottropensis ATCC 25435]
Length = 178
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE ++S + P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLENKAVSLEESGAYLHSATVTVPAPSVVRLKRFVRVPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC ++DHV+P SRGG+ W+N+VA+C +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGRCMYCGGVAT-SVDHVIPRSRGGKHVWDNVVASCRRCNHVK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ L E +L P P
Sbjct: 122 ADRHLVEIGWRLRHKPAPP 140
>gi|385810135|ref|YP_005846531.1| restriction endonuclease [Ignavibacterium album JCM 16511]
gi|383802183|gb|AFH49263.1| Restriction endonuclease [Ignavibacterium album JCM 16511]
Length = 143
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 78/121 (64%), Gaps = 5/121 (4%)
Query: 121 LEFMEKAD-VLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNF 179
L ++ KA+ VL + ++S + ++ P+++R+ ++V ++ I L+RKN++ RD +
Sbjct: 2 LIYLGKAEPVLIDEKKALHSVSRTYPWPSIIRISRFIKVPYKKVI---LTRKNILRRDGY 58
Query: 180 TCQYCSSRE-NLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKA 238
C YC + LT+DH++P +RGG+ WENL+ AC +CN+ KG +T +EANM+L P
Sbjct: 59 KCAYCGRADIPLTVDHIIPKARGGDDSWENLICACTRCNNVKGDRTPDEANMKLQFKPFK 118
Query: 239 P 239
P
Sbjct: 119 P 119
>gi|345850957|ref|ZP_08803944.1| hypothetical protein SZN_14461 [Streptomyces zinciresistens K42]
gi|345637614|gb|EGX59134.1| hypothetical protein SZN_14461 [Streptomyces zinciresistens K42]
Length = 168
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 81/151 (53%), Gaps = 6/151 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPA--VLRVRHLLQV 158
LVL+ S+ P++ V RA+ L +KA V+E + + IPA V+R+ ++V
Sbjct: 5 LVLNASFEPLSTVTLNRAVVLVLQDKA-VVEQSHPELRMRGAAVDIPAPRVIRLCRYVRV 63
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
RR + SR+ ++ RD C YC R T+DHVVP SRGG W N VA+C + N
Sbjct: 64 PFRR--QAPWSRRGVLVRDRHRCAYCGRRAT-TVDHVVPRSRGGRDTWLNTVASCAEDNH 120
Query: 219 RKGKKTLEEANMQLSRVPKAPKDYDILAIPL 249
RK +T E+A M L R P P D + + L
Sbjct: 121 RKADRTPEQAGMPLLRKPFEPTPADAMLLTL 151
>gi|383455201|ref|YP_005369190.1| HNH endonuclease domain-containing protein [Corallococcus
coralloides DSM 2259]
gi|380733368|gb|AFE09370.1| HNH endonuclease domain-containing protein [Corallococcus
coralloides DSM 2259]
Length = 197
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 93/185 (50%), Gaps = 32/185 (17%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFM-------EKADVLEYYD--------QTINSPNGSFY 145
LVL+ Y+PV+V KRA L + E+ + E+ D +I + + +
Sbjct: 7 LVLNRYYQPVHVTSVKRAFSLLYQGVAKAIDEQYRLYEFEDWAALSATQDSITTIDRTIR 66
Query: 146 IPAVLRV---RHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSS---RENLTIDHVVPAS 199
+P VL + HL R K SR N+ RDN TCQYC+ R L +DHV P +
Sbjct: 67 VPRVLVLGAYDHL------PRAKVRFSRLNIYARDNDTCQYCAKQLPRSELNLDHVSPRT 120
Query: 200 RGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRV 259
+GG+ WEN+V +C CN +KG +T E+A M+L + P P+ PL AIR +
Sbjct: 121 QGGKTTWENVVCSCVPCNLKKGGRTPEQAGMRLLKKPVRPR-----WTPLFRGAIRKITY 175
Query: 260 RKGTP 264
R+ P
Sbjct: 176 REWLP 180
>gi|441499522|ref|ZP_20981707.1| HNH endonuclease family protein [Fulvivirga imtechensis AK7]
gi|441436741|gb|ELR70100.1| HNH endonuclease family protein [Fulvivirga imtechensis AK7]
Length = 134
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 64/103 (62%), Gaps = 3/103 (2%)
Query: 137 INSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVV 196
+NS + SF +P+V+R+ + + + L+R N+ RDNF+CQYC + +LT+DHV+
Sbjct: 9 LNSVSRSFPMPSVIRLTRYVNIPYKGVA---LTRLNVFKRDNFSCQYCGTDRDLTLDHVL 65
Query: 197 PASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
P SRGG W NLV AC +CN+RKG T +EA L P P
Sbjct: 66 PRSRGGRSLWNNLVTACKRCNARKGDNTPDEAGTPLRIKPFRP 108
>gi|456389651|gb|EMF55046.1| hypothetical protein SBD_2359 [Streptomyces bottropensis ATCC
25435]
Length = 168
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 81/151 (53%), Gaps = 6/151 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPA--VLRVRHLLQV 158
LVL+ S+ P++ V RA+ L +KA V+E + + IPA V+R+ ++V
Sbjct: 5 LVLNASFEPLSTVTLNRAVVLVLQDKA-VVEQTHPELRMRGAAVDIPAPRVIRLCRYVRV 63
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
RR + SR+ ++ RD C YC R T+DHVVP SRGG W N VA+C + N
Sbjct: 64 PFRR--QAPWSRRGVLVRDRHRCAYCGRRAT-TVDHVVPRSRGGGDTWLNTVASCAEDNH 120
Query: 219 RKGKKTLEEANMQLSRVPKAPKDYDILAIPL 249
RK +T E+A M L R P P D + + L
Sbjct: 121 RKADRTPEQAGMPLLRQPFEPTPADAMLLSL 151
>gi|302560619|ref|ZP_07312961.1| HNH endonuclease [Streptomyces griseoflavus Tu4000]
gi|302478237|gb|EFL41330.1| HNH endonuclease [Streptomyces griseoflavus Tu4000]
Length = 178
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE ++S + P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLENKAVCLEESGAHLHSATVTVPAPSVVRLKRFVRVPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC ++DHV+P SRGG+ W+N+VA+C +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGRCMYCGGVAT-SVDHVIPRSRGGKHVWDNVVASCRRCNHVK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ L E +L P P
Sbjct: 122 ADRHLIELGWRLRHKPAPP 140
>gi|428182993|gb|EKX51852.1| hypothetical protein GUITHDRAFT_134187 [Guillardia theta CCMP2712]
Length = 294
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 81/140 (57%), Gaps = 5/140 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGS-FYIPAVLRVRHLLQVV 159
LVL+ S+ P+++V RA+ L + KA ++ +T S G +IP+V+ +R ++V
Sbjct: 138 LVLNASFEPLSIVSATRALSLLWEGKASMVVDKGKTWKSCGGQHVHIPSVVSLRRYVKVH 197
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ L+R+ ++ RD CQYC +IDH++P ++GG WEN+VAAC CN R
Sbjct: 198 PKM---PPLNRRTVLLRDEGKCQYCGDFAE-SIDHIIPRAKGGGTTWENVVAACKACNGR 253
Query: 220 KGKKTLEEANMQLSRVPKAP 239
K L++ N++L + P P
Sbjct: 254 KAAFYLKDTNLKLKKQPGPP 273
>gi|345854193|ref|ZP_08807042.1| endonuclease [Streptomyces zinciresistens K42]
gi|345634330|gb|EGX55988.1| endonuclease [Streptomyces zinciresistens K42]
Length = 178
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE ++S + P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLENKAVCLEESGAYLHSATVTVPAPSVVRLKRFVRVPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC ++DHV+P SRGG+ W+N+VA+C +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGRCMYCGGVAT-SVDHVIPRSRGGKHVWDNVVASCRRCNHVK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ L E +L P P
Sbjct: 122 ADRHLFEIGWRLRHKPAPP 140
>gi|289771606|ref|ZP_06530984.1| endonuclease [Streptomyces lividans TK24]
gi|289701805|gb|EFD69234.1| endonuclease [Streptomyces lividans TK24]
Length = 178
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE ++S + P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLENKAVCLEESGAFLHSATVTVPAPSVVRLKRFVRVPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC + ++DHV+P SRGG W+N+VA+C +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGRCMYCGAVAT-SVDHVIPRSRGGLHAWDNVVASCRRCNHVK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ L E +L P P
Sbjct: 122 ADRHLVELGWRLRHKPAPP 140
>gi|383650448|ref|ZP_09960854.1| endonuclease [Streptomyces chartreusis NRRL 12338]
Length = 178
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE ++S + P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLENKAVCLEESGAYLHSATVTVPAPSVVRLKRFVRVPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC ++DHV+P SRGG+ W+N+VA+C +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGRCMYCGGVAT-SVDHVIPRSRGGKHVWDNVVASCRRCNHVK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ L E +L P P
Sbjct: 122 ADRHLFEIGWRLRHKPAPP 140
>gi|21221112|ref|NP_626891.1| hypothetical protein SCO2655 [Streptomyces coelicolor A3(2)]
gi|6900954|emb|CAB71830.1| conserved hypothetical protein SC8E4A.25c [Streptomyces coelicolor
A3(2)]
Length = 178
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE ++S + P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLENKAVCLEESGAFLHSATVTVPAPSVVRLKRFVRVPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC + ++DHV+P SRGG W+N+VA+C +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGRCMYCGAVAT-SVDHVIPRSRGGLHAWDNVVASCRRCNHVK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ L E +L P P
Sbjct: 122 ADRHLVELGWRLRHKPAPP 140
>gi|302551469|ref|ZP_07303811.1| endonuclease [Streptomyces viridochromogenes DSM 40736]
gi|302469087|gb|EFL32180.1| endonuclease [Streptomyces viridochromogenes DSM 40736]
Length = 178
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE ++S + P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLENKAVCLEESGAFMHSATVTVPAPSVVRLKRFVRVPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC ++DHV+P SRGG+ W+N+VA+C +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGRCMYCGGVAT-SVDHVIPRSRGGKHVWDNVVASCRRCNHVK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ L E +L P P
Sbjct: 122 ADRHLVEIGWRLRHKPAPP 140
>gi|455648658|gb|EMF27523.1| endonuclease [Streptomyces gancidicus BKS 13-15]
Length = 178
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE ++S + P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLENKAVCLEETGAYLHSATVTVPAPSVVRLKRFVRVPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC ++DHV+P SRGG+ W+N+VA+C +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGRCMYCGGVAT-SVDHVIPRSRGGKHVWDNVVASCRRCNHVK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ L E +L P P
Sbjct: 122 ADRHLFELGWRLRHKPAPP 140
>gi|443627474|ref|ZP_21111861.1| putative endonuclease [Streptomyces viridochromogenes Tue57]
gi|443339006|gb|ELS53261.1| putative endonuclease [Streptomyces viridochromogenes Tue57]
Length = 178
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE ++S + P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLENKAVCLEESGAYLHSATVTVPAPSVVRLKRFVRVPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC ++DHV+P SRGG+ W+N+VA+C +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGRCMYCGGVAT-SVDHVIPRSRGGKHVWDNVVASCRRCNHVK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ L E +L P P
Sbjct: 122 ADRHLFELGWRLRHKPAPP 140
>gi|357399367|ref|YP_004911292.1| endonuclease [Streptomyces cattleya NRRL 8057 = DSM 46488]
gi|386355408|ref|YP_006053654.1| endonuclease [Streptomyces cattleya NRRL 8057 = DSM 46488]
gi|337765776|emb|CCB74485.1| putative endonuclease [Streptomyces cattleya NRRL 8057 = DSM 46488]
gi|365805916|gb|AEW94132.1| putative endonuclease [Streptomyces cattleya NRRL 8057 = DSM 46488]
Length = 178
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 75/139 (53%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE ++S + P+V+++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLNNKAICLEESGALMHSATRALPAPSVVKLTKFVRVPF 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC ++DHV+P SRGG+ W+N+VAAC +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGKCAYCGCAAT-SVDHVIPRSRGGKHTWDNVVAACRRCNHVK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ + E +L P P
Sbjct: 122 ADRHITELGWRLRHQPAPP 140
>gi|395773423|ref|ZP_10453938.1| endonuclease [Streptomyces acidiscabies 84-104]
Length = 168
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 83/159 (52%), Gaps = 6/159 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPA--VLRVRHLLQV 158
LVL+ S+ P++ V RA+ L +KA V+E + IPA V+R+ ++V
Sbjct: 5 LVLNASFEPLSTVTLNRAVVLVLQDKA-VVEQAHPELRMRGAVVDIPAPRVIRLCRYVRV 63
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
RRR SR+ ++ RD C YC R T+DHVVP ++GG W N VA+C + N
Sbjct: 64 PFRRRAP--WSRRGVLVRDRHRCAYCGRRAT-TVDHVVPRAQGGRDSWLNTVASCAEDNH 120
Query: 219 RKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRML 257
RK +T E+A M L R P P D + + L + R L
Sbjct: 121 RKADRTPEQAGMPLLREPFEPTPADAMLLSLGTEDFRAL 159
>gi|291439612|ref|ZP_06579002.1| endonuclease [Streptomyces ghanaensis ATCC 14672]
gi|291342507|gb|EFE69463.1| endonuclease [Streptomyces ghanaensis ATCC 14672]
Length = 178
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE ++S + P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLENKAVCLEESGAYLHSATVTVPAPSVVRLKRFVRVPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC ++DHV+P SRGG+ W+N+VA+C +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGRCMYCGGVAT-SVDHVIPRSRGGKHVWDNVVASCRRCNHVK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ L E +L P P
Sbjct: 122 ADRHLFELGWRLRHKPAPP 140
>gi|418057376|ref|ZP_12695367.1| HNH endonuclease [Methylobacterium extorquens DSM 13060]
gi|373569172|gb|EHP95110.1| HNH endonuclease [Methylobacterium extorquens DSM 13060]
Length = 187
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 90/187 (48%), Gaps = 19/187 (10%)
Query: 94 ELACFRGLVLDISYRPVNV-----VCWKRAICLEFMEKADVLEYYDQTINSPNGSFY-IP 147
+L LVL+ YRP++ WK A+ + + DV+ YD+T + G +P
Sbjct: 3 DLTAHPALVLNADYRPLSSHPLSSWGWKDALTAVYFGRVDVVAVYDRTARTAGGKLIPLP 62
Query: 148 AVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRE---NLTIDHVVPASRGGEW 204
+V+R+R + R R + +++R + RD C YC ++ LT DHV+P SRGG
Sbjct: 63 SVVRLRTFV----RPRKRVSVTRWGIFTRDVNRCCYCLEQKPISELTFDHVIPRSRGGGD 118
Query: 205 KWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTP 264
W+NL +C CN RK +T EA M L + P D+ A + L V P
Sbjct: 119 TWDNLATSCMPCNFRKANRTPGEAKMPLLQRVYEPTQADLYARGME------LGVHANVP 172
Query: 265 VEWRQYL 271
+W Y+
Sbjct: 173 KDWLSYI 179
>gi|408531829|emb|CCK30003.1| endonuclease [Streptomyces davawensis JCM 4913]
Length = 178
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE ++S + P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLENKAVCLEESGAFMHSATVTVPAPSVVRLKRFVRVPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC ++DHV+P SRGG+ W+N+VA+C +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGRCMYCGGVAT-SVDHVIPRSRGGKHVWDNVVASCRRCNHVK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ L E +L P P
Sbjct: 122 ADRHLFEIGWRLRHKPAPP 140
>gi|418467731|ref|ZP_13038601.1| hypothetical protein SMCF_1503 [Streptomyces coelicoflavus ZG0656]
gi|371551653|gb|EHN78931.1| hypothetical protein SMCF_1503 [Streptomyces coelicoflavus ZG0656]
Length = 178
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE ++S + P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLENKAVCLEESGAFLHSTTVTVPAPSVVRLKRFVRVPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC + ++DHV+P SRGG W+N+VA+C +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGRCMYCGAVAT-SVDHVIPRSRGGLHAWDNVVASCRRCNHVK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ L E +L P P
Sbjct: 122 ADRHLVELGWRLRHKPAPP 140
>gi|297199724|ref|ZP_06917121.1| endonuclease [Streptomyces sviceus ATCC 29083]
gi|197713904|gb|EDY57938.1| endonuclease [Streptomyces sviceus ATCC 29083]
Length = 178
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE ++S + P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLENKAVSLEESGAYMHSATVTVPAPSVVRLKRFVRVPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC ++DHV+P SRGG+ W+N+VA+C +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGRCMYCGGVAT-SVDHVIPRSRGGKHVWDNVVASCRRCNHVK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ L E +L P P
Sbjct: 122 ADRHLFEIGWRLRHKPAPP 140
>gi|443628618|ref|ZP_21112962.1| hypothetical protein STVIR_6867 [Streptomyces viridochromogenes
Tue57]
gi|443337882|gb|ELS52180.1| hypothetical protein STVIR_6867 [Streptomyces viridochromogenes
Tue57]
Length = 168
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 82/151 (54%), Gaps = 6/151 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPA--VLRVRHLLQV 158
LVL+ S+ P++ V RA+ L +KA V+E + + IPA V+R+ ++V
Sbjct: 5 LVLNASFEPLSTVTLNRAVVLVLQDKA-VVEQAHPELRMRGAAVDIPAPRVIRLCRYVRV 63
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
RR + SR+ ++ RD C YC R T+DHVVP S+GG+ W N VA+C + N
Sbjct: 64 PFRR--QAPWSRRGVLVRDRHRCAYCGRRAT-TVDHVVPRSQGGQDTWLNTVASCAEDNH 120
Query: 219 RKGKKTLEEANMQLSRVPKAPKDYDILAIPL 249
RK +T E+A M L R P P D + + L
Sbjct: 121 RKADRTPEQAGMPLLREPFEPTPADAMLLAL 151
>gi|302519105|ref|ZP_07271447.1| LOW QUALITY PROTEIN: endonuclease [Streptomyces sp. SPB78]
gi|302428000|gb|EFK99815.1| LOW QUALITY PROTEIN: endonuclease [Streptomyces sp. SPB78]
Length = 228
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE ++S + + P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLENKAQCLEETGAFLHSASRTVPAPSVVRLKRYVRVPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC S ++DHVVP SRGG W+N+VA+C +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGKCAYCGSVAT-SVDHVVPRSRGGRHAWDNVVASCRRCNHTK 121
Query: 221 GKKTLEE 227
+ L +
Sbjct: 122 ADRYLAD 128
>gi|441182038|ref|ZP_20970292.1| endonuclease [Streptomyces rimosus subsp. rimosus ATCC 10970]
gi|440614215|gb|ELQ77514.1| endonuclease [Streptomyces rimosus subsp. rimosus ATCC 10970]
Length = 167
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 79/151 (52%), Gaps = 4/151 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT-INSPNGSFYIPAVLRVRHLLQVV 159
LVL+ S+ P+ V +RA+ L +KA V + + I + +P V+R+ ++V
Sbjct: 5 LVLNASFEPLATVSLRRAVVLVMQDKAVVEQAHPGLRIRAAAVEVPVPRVIRLSRYVRVP 64
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
RR + SR+ ++ RD C YC R T+DH+VP SRGG W N VA+C + N R
Sbjct: 65 FRR--QAAWSRRGVLVRDQHRCAYCGRRAT-TVDHIVPRSRGGGDSWLNTVASCAEDNHR 121
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLT 250
K +T E+A M+L P P D L L
Sbjct: 122 KADRTPEQAGMRLLTRPFEPTPADALVAALA 152
>gi|302550464|ref|ZP_07302806.1| endonuclease [Streptomyces viridochromogenes DSM 40736]
gi|302468082|gb|EFL31175.1| endonuclease [Streptomyces viridochromogenes DSM 40736]
Length = 168
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 81/152 (53%), Gaps = 6/152 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPA--VLRVRHLLQV 158
LVL+ S+ P++ V RA+ L +KA V+E + + IPA V+R+ ++V
Sbjct: 5 LVLNASFEPLSTVTLNRAVVLVLQDKA-VVEQAHPELRMRGAAVDIPAPRVIRLCQYVRV 63
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
RRR SR+ ++ RD C YC R T+DHVVP S+GG+ W N VA+C + N
Sbjct: 64 PFRRRAP--WSRRGVLVRDRHRCAYCGRRAT-TVDHVVPRSQGGQDTWLNTVASCAEDNH 120
Query: 219 RKGKKTLEEANMQLSRVPKAPKDYDILAIPLT 250
RK +T EA M L R P P D + + L
Sbjct: 121 RKANRTPVEAGMPLLREPFEPTPADAMLLALA 152
>gi|319947987|ref|ZP_08022164.1| putative endonuclease [Dietzia cinnamea P4]
gi|319438333|gb|EFV93276.1| putative endonuclease [Dietzia cinnamea P4]
Length = 203
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 82/144 (56%), Gaps = 5/144 (3%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTI--NSPNGSFYIPAVLRVRHLL 156
R L+L+ SY + + +RA+ + KADV+ + + S + S +P+V+R+R +
Sbjct: 37 RVLLLNASYEALTALPARRAVVMLLGGKADVVHEHPVEVVVRSVDTSVRVPSVIRLREYV 96
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
++ R ++ ++R LM+RD C YC+++ TIDHVVP SRGG WEN VA+C C
Sbjct: 97 RIPYRSQVP--MTRAALMHRDGHRCGYCNAKAT-TIDHVVPRSRGGAHNWENCVASCAPC 153
Query: 217 NSRKGKKTLEEANMQLSRVPKAPK 240
N RK K L E +L AP+
Sbjct: 154 NHRKADKLLSELGWELKVPLVAPR 177
>gi|326328611|ref|ZP_08194951.1| HNH endonuclease domain protein [Nocardioidaceae bacterium Broad-1]
gi|325953572|gb|EGD45572.1| HNH endonuclease domain protein [Nocardioidaceae bacterium Broad-1]
Length = 147
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 75/146 (51%), Gaps = 5/146 (3%)
Query: 102 VLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKR 161
+ + S+ P+ V +K A+ + F E A V E + P+ + AV VR++
Sbjct: 6 LYNASFEPLGRVSFKHAVRMLFREVAVVHEQQGDKMIGPHP--WPKAVRLVRYIAMHWMY 63
Query: 162 RRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
R SR+ ++ RD C YC TIDH++P SRGG W W N VAAC +CN RKG
Sbjct: 64 R--PAGYSREGVLKRDQHRCAYCGGHAR-TIDHLLPQSRGGRWTWMNTVAACGRCNGRKG 120
Query: 222 KKTLEEANMQLSRVPKAPKDYDILAI 247
+T EEA+M L P P + AI
Sbjct: 121 NRTPEEAHMVLRIQPYIPTRAQLAAI 146
>gi|429199672|ref|ZP_19191418.1| HNH endonuclease domain protein [Streptomyces ipomoeae 91-03]
gi|428664626|gb|EKX63903.1| HNH endonuclease domain protein [Streptomyces ipomoeae 91-03]
Length = 178
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE ++S + P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLENKAVSLEESGAFMHSATVTVPAPSVVRLKRFVRVPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC ++DHV+P SRGG+ W+N+VA+C +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGRCMYCGGVAT-SVDHVIPRSRGGKHVWDNVVASCRRCNHVK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ L E +L P P
Sbjct: 122 ADRHLFEIGWRLRHKPAPP 140
>gi|325106913|ref|YP_004267981.1| HNH endonuclease [Planctomyces brasiliensis DSM 5305]
gi|324967181|gb|ADY57959.1| HNH endonuclease [Planctomyces brasiliensis DSM 5305]
Length = 198
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 81/166 (48%), Gaps = 18/166 (10%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYD-QTINSPNGSFYIPA----------- 148
LVL+ S++PV V R + + + ++ D QT + + S P
Sbjct: 11 LVLNKSWQPVRVATAARCLIMLWNGTVKAVDLNDYQTYSWEDWSRITPGDEHVVVRSVQQ 70
Query: 149 ---VLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGG 202
V V L K+ + SR+NL RD CQYC S LTIDHV+P S+GG
Sbjct: 71 DILVPDVVVLQNYAKQPKRTVTFSRRNLFRRDAHQCQYCGCKPSSSELTIDHVLPRSQGG 130
Query: 203 EWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIP 248
WEN V AC KCN+RKG +T E+ANM L P PK + ++P
Sbjct: 131 GSSWENCVLACVKCNTRKGGRTPEQANMPLKVKPVRPKWTHLFSMP 176
>gi|345014181|ref|YP_004816535.1| HNH endonuclease [Streptomyces violaceusniger Tu 4113]
gi|344040530|gb|AEM86255.1| HNH endonuclease [Streptomyces violaceusniger Tu 4113]
Length = 167
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 80/145 (55%), Gaps = 6/145 (4%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQ--TINSPNGSFYIPAVLRVRHLLQV 158
LVL+ S+ P+ V +RA+ L +KA V+E+ + + + +P V+R+ ++V
Sbjct: 5 LVLNASFEPLATVTLRRAVVLVLQDKA-VVEHAHPGLRVRAADIDLPLPRVIRLCRYVRV 63
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
RRR SR+ ++ RD C YC R T+DHVVP SRGG W N VA+C + N
Sbjct: 64 PFRRRAP--WSRRGVLVRDQHRCGYCGRRAT-TVDHVVPRSRGGGDTWLNTVASCAEDNH 120
Query: 219 RKGKKTLEEANMQLSRVPKAPKDYD 243
RK +T E+A M+L + P P D
Sbjct: 121 RKADRTPEQAGMRLLKAPFEPTPSD 145
>gi|284034484|ref|YP_003384415.1| HNH endonuclease [Kribbella flavida DSM 17836]
gi|283813777|gb|ADB35616.1| HNH endonuclease [Kribbella flavida DSM 17836]
Length = 148
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 78/145 (53%), Gaps = 4/145 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLR-VRHLLQVV 159
+VL+ SY ++VV AI + E A V E D + G F +P VLR VR+++
Sbjct: 5 IVLNASYEQLHVVSIPHAIRMLVREVAVVEEADD---GASFGPFPLPRVLRLVRYVVTKW 61
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + +R ++ RD +TC YC T+DHVVP SRGG +W N VAA +CN +
Sbjct: 62 RYASGRLQYTRAGVLKRDKYTCAYCGKPGATTMDHVVPRSRGGRGEWLNAVAAHARCNEK 121
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDI 244
KG +T EEA M L P P +I
Sbjct: 122 KGCRTPEEAGMPLLWQPWVPSRAEI 146
>gi|302533681|ref|ZP_07286023.1| endonuclease [Streptomyces sp. C]
gi|302442576|gb|EFL14392.1| endonuclease [Streptomyces sp. C]
Length = 170
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 80/150 (53%), Gaps = 4/150 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT-INSPNGSFYIPAVLRVRHLLQVV 159
LVL+ S+ P++ V RA+ L +KA V + + + + + +P V+R+ ++V
Sbjct: 8 LVLNASFEPLSTVTLNRAVVLVLQDKAVVEQSHPELRVRAATMELPMPRVIRLCRYVRVP 67
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
RR SR+ ++ RD C YC R T+DHV+P ++GG W N VA+C + N R
Sbjct: 68 FRRHAP--WSRRGVLVRDQHRCAYCGKRAT-TVDHVLPRAQGGGDTWLNTVASCAEDNHR 124
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPL 249
K +T EEA M L R P P D + + L
Sbjct: 125 KAARTPEEAGMPLLRKPFVPSPADAMLLAL 154
>gi|383776650|ref|YP_005461216.1| putative endonuclease [Actinoplanes missouriensis 431]
gi|381369882|dbj|BAL86700.1| putative endonuclease [Actinoplanes missouriensis 431]
Length = 143
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 78/141 (55%), Gaps = 6/141 (4%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYY-DQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ P++ V + AI + F + A V E D I G + +P V+R+ +
Sbjct: 5 LVLNADCLPLHRVSLRHAIRMLFRQVAVVHEAQPDDHI----GVYPVPTVVRLVSYVVTR 60
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
RR + SR ++ RD C YC+ + TIDHV+P SRGG WEN VAAC KCN+R
Sbjct: 61 WRRGRGPSWSRAGVLARDGRVCAYCAGPAS-TIDHVLPRSRGGRNSWENTVAACGKCNNR 119
Query: 220 KGKKTLEEANMQLSRVPKAPK 240
K +T EEA M L +P AP+
Sbjct: 120 KRDRTPEEARMPLLVIPVAPR 140
>gi|405351405|ref|ZP_11022888.1| HNH endonuclease family protein [Chondromyces apiculatus DSM 436]
gi|397093296|gb|EJJ24019.1| HNH endonuclease family protein [Myxococcus sp. (contaminant ex DSM
436)]
Length = 197
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 92/182 (50%), Gaps = 26/182 (14%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVL-------EYYD--------QTINSPNGSFY 145
LVL+ Y+PV+V KRA L ++ A + E+ D I + +
Sbjct: 7 LVLNRYYQPVHVTSVKRAFSLLYLGVAKAIDSQYRLYEFADWAELSATQDCITTIERTIR 66
Query: 146 IPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSS---RENLTIDHVVPASRGG 202
+P VL V + R R++ SR N+ RDN TCQYC R L +DHV+P ++GG
Sbjct: 67 VPRVL-VLSAYDHLPRGRVR--FSRLNIYARDNDTCQYCGKNLPRSELNLDHVMPRTQGG 123
Query: 203 EWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKG 262
+ WEN+V +C CN +KG +T E+AN++L + P P+ PL A R + R+
Sbjct: 124 KTTWENVVCSCVPCNLKKGGRTPEQANLKLLKKPVRPR-----WTPLFRGATRKVTYREW 178
Query: 263 TP 264
P
Sbjct: 179 LP 180
>gi|108757518|ref|YP_631545.1| HNH endonuclease domain-containing protein [Myxococcus xanthus DK
1622]
gi|108461398|gb|ABF86583.1| HNH endonuclease domain protein [Myxococcus xanthus DK 1622]
Length = 192
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 94/189 (49%), Gaps = 31/189 (16%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVL-------EYYD--------QTINSPNGSFY 145
LVL+ Y+PV+V KRA L ++ A + E+ D I + +
Sbjct: 2 LVLNRYYQPVHVTSVKRAFSLLYLGVAKAIDSQYRLYEFADWAELSATQDCITTIERTIR 61
Query: 146 IPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSS---RENLTIDHVVPASRGG 202
+P VL V + R R++ SR N+ RDN TCQYC R L +DHV+P ++GG
Sbjct: 62 VPRVL-VLSAYDHLPRGRVR--FSRLNIYARDNDTCQYCGKNLPRSELNLDHVMPRTQGG 118
Query: 203 EWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKG 262
+ WEN+V +C CN RKG +T E+A+M+L + P P+ PL A RK
Sbjct: 119 KTTWENVVCSCVPCNLRKGGRTPEQAHMKLLKKPVRPR-----WTPLFRGA-----TRKV 168
Query: 263 TPVEWRQYL 271
T EW +L
Sbjct: 169 TYQEWLPFL 177
>gi|291440498|ref|ZP_06579888.1| endonuclease [Streptomyces ghanaensis ATCC 14672]
gi|291343393|gb|EFE70349.1| endonuclease [Streptomyces ghanaensis ATCC 14672]
Length = 168
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 80/150 (53%), Gaps = 4/150 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT-INSPNGSFYIPAVLRVRHLLQVV 159
LVL+ S+ P++ V RA+ L +KA V + + + + +P V+R+ ++V
Sbjct: 5 LVLNASFEPLSTVTLNRAVVLVLQDKAVVEQAHPELRMRGAAVDIPVPRVIRLCQYVRVP 64
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
RR + SR+ ++ RD + C YC R T+DHVVP S+GG W N VA+C + N R
Sbjct: 65 FRR--QAPWSRRGVLVRDRYRCAYCGRRAT-TVDHVVPRSQGGRDTWLNTVASCAEDNHR 121
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPL 249
K +T EA M L R P P D + + L
Sbjct: 122 KANRTPAEAGMPLLRQPFEPTPADAMLLAL 151
>gi|296121467|ref|YP_003629245.1| HNH endonuclease [Planctomyces limnophilus DSM 3776]
gi|296013807|gb|ADG67046.1| HNH endonuclease [Planctomyces limnophilus DSM 3776]
Length = 198
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 83/157 (52%), Gaps = 18/157 (11%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYD-QTINSPNGSFYIPAV---------- 149
LVL+ +++PV V R++ L +A +++ D Q + S IP
Sbjct: 10 LVLNRNWQPVGVASVARSLSLVASGRARIVDPADYQLYTWQDWSRLIPQQDKPFVQSVTF 69
Query: 150 -LRVRHLLQVVKRRRIKNNL---SRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGG 202
LRV ++ + R+ + SR NL RD +TCQYC ++ E LTIDHV P SRGG
Sbjct: 70 RLRVPEVITLTGYDRVPRQVVTFSRLNLYKRDQYTCQYCDAKPGSEELTIDHVQPRSRGG 129
Query: 203 EWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
WEN V AC CN++K +T +EA+M L ++P P
Sbjct: 130 TSTWENCVLACIACNNKKANRTPQEAHMPLRKMPIRP 166
>gi|302561416|ref|ZP_07313758.1| HNH endonuclease domain-containing protein [Streptomyces
griseoflavus Tu4000]
gi|302479034|gb|EFL42127.1| HNH endonuclease domain-containing protein [Streptomyces
griseoflavus Tu4000]
Length = 168
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 80/151 (52%), Gaps = 6/151 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPA--VLRVRHLLQV 158
LVL+ S+ P++ V RA+ L +KA V+E + IPA V+R+ ++V
Sbjct: 5 LVLNASFEPLSTVTLNRAVVLVLQDKA-VVEQAHPELRMRGAEVDIPAPRVIRLCQYVRV 63
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
RR + SR+ ++ RD C YC R T+DHVVP S GG+ W N VA+C + N
Sbjct: 64 PFRR--QAPWSRRGVLVRDRHRCAYCGRRAT-TVDHVVPRSHGGQDTWLNTVASCAEDNH 120
Query: 219 RKGKKTLEEANMQLSRVPKAPKDYDILAIPL 249
RK +T E+A M L R P P D + + L
Sbjct: 121 RKANRTPEQAGMPLLRRPFEPTPADAMLLAL 151
>gi|373852961|ref|ZP_09595761.1| HNH endonuclease [Opitutaceae bacterium TAV5]
gi|391229309|ref|ZP_10265515.1| restriction endonuclease [Opitutaceae bacterium TAV1]
gi|372475190|gb|EHP35200.1| HNH endonuclease [Opitutaceae bacterium TAV5]
gi|391218970|gb|EIP97390.1| restriction endonuclease [Opitutaceae bacterium TAV1]
Length = 205
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 90/178 (50%), Gaps = 30/178 (16%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQ------------------------T 136
LVL+ ++ VNV+ KRA L A+V+ +++
Sbjct: 10 LVLNRLWQAVNVIGAKRAFALLARGHANVVHHHEDDFRVFSFMDWMDFSRHNPPVEELDM 69
Query: 137 INSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCS---SRENLTID 193
+++P +P V+ + + R+ +K L+R N+ RD TCQYC +RE+L +D
Sbjct: 70 VHTPRTVIRLPRVILLT-WFDKLPRKEVK--LTRNNVFERDKDTCQYCGQIFNREDLNLD 126
Query: 194 HVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTS 251
HV+P RGG WEN+V +C CNSRK + EA M+L R P PK ++++ L++
Sbjct: 127 HVIPRDRGGRTTWENIVCSCIPCNSRKANRLPHEARMRLIRKPVRPKWRPVISLVLSN 184
>gi|359145328|ref|ZP_09179138.1| hypothetical protein StrS4_06705 [Streptomyces sp. S4]
Length = 192
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE ++S + + P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLESKAVCLEESGAFLHSESRTVPAPSVVRLKRFVKVPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC ++DHV+P SRGG W+N+VA+C +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGRCVYCGGVAT-SVDHVIPRSRGGLHVWDNVVASCRRCNHVK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ L E +L P P
Sbjct: 122 ADRHLMELGWRLRNKPAPP 140
>gi|152967494|ref|YP_001363278.1| HNH endonuclease [Kineococcus radiotolerans SRS30216]
gi|151362011|gb|ABS05014.1| HNH endonuclease [Kineococcus radiotolerans SRS30216]
Length = 166
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 77/143 (53%), Gaps = 3/143 (2%)
Query: 98 FRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQ 157
R LVL+ + P+ VV ++RA+ L KA V+ + S P+V+ + ++
Sbjct: 3 VRTLVLNAGFEPLAVVSFRRALVLVLAGKASVVLADPDPVVGATMSLERPSVILLTRYVR 62
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
V + + + +SR+ ++ RD+ C YC TIDHV+P SR G WENLVA C +CN
Sbjct: 63 VPRGQVVP--VSRRGVLRRDHQRCAYCRGHAT-TIDHVLPRSRRGPDTWENLVACCVRCN 119
Query: 218 SRKGKKTLEEANMQLSRVPKAPK 240
+ KG +T EE + P AP+
Sbjct: 120 NAKGDRTPEEMGWSMPFRPTAPR 142
>gi|291451355|ref|ZP_06590745.1| endonuclease [Streptomyces albus J1074]
gi|421740402|ref|ZP_16178656.1| restriction endonuclease [Streptomyces sp. SM8]
gi|291354304|gb|EFE81206.1| endonuclease [Streptomyces albus J1074]
gi|406691189|gb|EKC94956.1| restriction endonuclease [Streptomyces sp. SM8]
Length = 192
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ VV +RA+ L KA LE ++S + + P+V+R++ ++V
Sbjct: 5 LVLNASYEPLGVVPLRRALVLVLESKAVCLEESGAFLHSESRTVPAPSVVRLKRFVKVPY 64
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ L RD C YC ++DHV+P SRGG W+N+VA+C +CN K
Sbjct: 65 RGPVP--LTRRALFARDGGRCVYCGGVAT-SVDHVIPRSRGGLHVWDNVVASCRRCNHVK 121
Query: 221 GKKTLEEANMQLSRVPKAP 239
+ L E +L P P
Sbjct: 122 ADRHLMELGWRLRNKPAPP 140
>gi|297198715|ref|ZP_06916112.1| endonuclease [Streptomyces sviceus ATCC 29083]
gi|197715404|gb|EDY59438.1| endonuclease [Streptomyces sviceus ATCC 29083]
Length = 168
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 81/151 (53%), Gaps = 6/151 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPA--VLRVRHLLQV 158
LVL+ S+ P++ V RA+ L +KA V+E + + IPA V+R+ ++V
Sbjct: 5 LVLNASFEPLSTVTLNRAVVLVLQDKA-VVEQSHPELRMRGAAVDIPAPRVIRLCRYVRV 63
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
RR + SR+ ++ RD C YC R T+DHVVP S+GG+ W N VA+C + N
Sbjct: 64 PFRR--QAPWSRRGVLVRDRHRCAYCGRRAT-TVDHVVPRSQGGQDTWLNTVASCAEDNH 120
Query: 219 RKGKKTLEEANMQLSRVPKAPKDYDILAIPL 249
RK +T EA M L R P P D + + L
Sbjct: 121 RKANRTPAEAGMPLLREPFEPTPADAMLLSL 151
>gi|269126730|ref|YP_003300100.1| HNH endonuclease [Thermomonospora curvata DSM 43183]
gi|268311688|gb|ACY98062.1| HNH endonuclease [Thermomonospora curvata DSM 43183]
Length = 146
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 76/140 (54%), Gaps = 4/140 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ SY P+ V + AI + A V E + + G+F +P VLR+ + +
Sbjct: 4 LVLNASYEPLQRVDLRHAIRMLVRGVAVVEEAEEGRMI---GAFPVPRVLRLVRYVAMRW 60
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + SR+ + RD C YC N T+DH+VP SRGG WEN V AC +CN+RK
Sbjct: 61 RHGKRPPWSRRGVRLRDRGLCAYCGKPGN-TVDHIVPLSRGGGDTWENTVLACGRCNNRK 119
Query: 221 GKKTLEEANMQLSRVPKAPK 240
G +T EA ++L P+ P+
Sbjct: 120 GSRTPAEAGLKLRVQPRVPR 139
>gi|386846663|ref|YP_006264676.1| HNH endonuclease [Actinoplanes sp. SE50/110]
gi|359834167|gb|AEV82608.1| HNH endonuclease [Actinoplanes sp. SE50/110]
Length = 145
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 75/140 (53%), Gaps = 6/140 (4%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYY-DQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ P++ V + AI + F + A V E D TI G + +P V+R+ +
Sbjct: 5 LVLNADCGPLHRVSLRHAIRMLFRQVAVVHEARPDATI----GVYQVPTVVRLVSYVVTR 60
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
RR SR ++ RD TC YC TIDHV+P SRGG +W N VAAC +CN+R
Sbjct: 61 WRRGRGPGWSRAGVLARDRRTCGYCGE-PATTIDHVLPRSRGGGNEWLNTVAACGRCNNR 119
Query: 220 KGKKTLEEANMQLSRVPKAP 239
KG +T EA M L P AP
Sbjct: 120 KGDRTPAEARMPLRVTPYAP 139
>gi|320102633|ref|YP_004178224.1| HNH endonuclease [Isosphaera pallida ATCC 43644]
gi|319749915|gb|ADV61675.1| HNH endonuclease [Isosphaera pallida ATCC 43644]
Length = 199
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 81/167 (48%), Gaps = 24/167 (14%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYD------------------QTINSPNG 142
LVL+ ++PVNV R + + + E A +++ D +I N
Sbjct: 11 LVLNRHWQPVNVASVARCLVMVYNESARIVDPDDFRLYTWEDWARLTPRDDEPSIRCVNF 70
Query: 143 SFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPAS 199
+P V+ L + K R SR+N+ RD+ TCQYC + E LTIDHV P S
Sbjct: 71 RLKVPEVI---TLTRYDKYRENTVTFSRRNIFKRDHGTCQYCGCKPGSEALTIDHVRPRS 127
Query: 200 RGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILA 246
+GG WEN V AC +CNSRK +T E+A M L R P P I A
Sbjct: 128 QGGVSSWENCVLACVECNSRKANRTPEQAGMVLKRKPFRPNWKPIYA 174
>gi|290961502|ref|YP_003492684.1| hypothetical protein SCAB_71551 [Streptomyces scabiei 87.22]
gi|260651028|emb|CBG74146.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length = 168
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 79/151 (52%), Gaps = 6/151 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPA--VLRVRHLLQV 158
LVL+ S+ P++ V RA+ L KA V+E + IPA V+R+ ++V
Sbjct: 5 LVLNASFEPLSTVTLNRAVVLVLQAKA-VVEQTHPELRMRGAEVDIPAPRVIRLCRYVRV 63
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
RR + SR+ ++ RD C YC R T+DHVVP SRGG W N VA+C + N
Sbjct: 64 PFRR--QAPWSRRGVLVRDRHRCAYCGRRAT-TVDHVVPRSRGGGDTWLNTVASCAEDNH 120
Query: 219 RKGKKTLEEANMQLSRVPKAPKDYDILAIPL 249
RK +T E+A M L R P P D + + L
Sbjct: 121 RKADRTPEQAGMPLLRQPFEPTPADAMLLSL 151
>gi|406836072|ref|ZP_11095666.1| HNH endonuclease [Schlesneria paludicola DSM 18645]
Length = 242
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 87/178 (48%), Gaps = 39/178 (21%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLE--------YYDQTINSP-NGSFYIPAV-- 149
LVL+ +++PV V R++ L E+A +++ + D P + ++ +V
Sbjct: 34 LVLNRNWQPVGVASVARSLTLVAAERARIVDPADFQQHTWADWAKRIPQDDELFVQSVTS 93
Query: 150 -LRVRHLLQVVKRRRIKNN---LSRKNLMYRDNFTCQYCSSR------------------ 187
+RV ++ + + R+ N SR+N+ RD +TCQYC
Sbjct: 94 RIRVPEVITLTEYDRVPTNTVTFSRRNIYKRDRYTCQYCGRHSRFIGVDNRDSQAERSPR 153
Query: 188 ------ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
E+LTIDHV+P SRGG WEN V AC +CN RK +T EA+M L +VP P
Sbjct: 154 HECLRTEDLTIDHVLPRSRGGTSVWENCVLACLECNLRKADRTPAEAHMPLQKVPTRP 211
>gi|294811842|ref|ZP_06770485.1| endonuclease [Streptomyces clavuligerus ATCC 27064]
gi|294324441|gb|EFG06084.1| endonuclease [Streptomyces clavuligerus ATCC 27064]
Length = 195
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 77/146 (52%), Gaps = 4/146 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT-INSPNGSFYIPAVLRVRHLLQVV 159
LVL+ S+ P++ V RA+ L +KA V + + + + +P V+R+ ++V
Sbjct: 31 LVLNASFEPLSTVSLHRAVILVLQDKAVVEQAHPGLRMRAAAVDLPVPQVIRLCRYVRVP 90
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
RR + SR+ ++ RD C YC R T+DHVVP S GG W N VA+C + N R
Sbjct: 91 FRR--QAPWSRRGVLARDQHRCAYCGRRAT-TVDHVVPRSHGGADSWLNTVASCAEDNHR 147
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDIL 245
K +T E+A M L R P P D +
Sbjct: 148 KADRTPEQAGMPLLRQPFVPSPTDAM 173
>gi|408532943|emb|CCK31117.1| endonuclease [Streptomyces davawensis JCM 4913]
Length = 168
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 81/151 (53%), Gaps = 6/151 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPA--VLRVRHLLQV 158
LVL+ S+ P++ V RA+ L +KA V+E + + IPA V+R+ ++V
Sbjct: 5 LVLNASFEPLSTVTLNRAVVLVLQDKA-VVEQSHPELRMRGAAVDIPAPRVIRLCRYVRV 63
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
RRR SR+ ++ RD C YC R T+DHV+P S+GG+ W N VA+C + N
Sbjct: 64 PFRRRAP--WSRRGVLVRDRHRCAYCGRRAT-TVDHVLPRSQGGQDTWLNTVASCAEDNH 120
Query: 219 RKGKKTLEEANMQLSRVPKAPKDYDILAIPL 249
RK +T EA M L R P P D + + L
Sbjct: 121 RKANRTPVEAGMPLLREPFEPTPADAMLLSL 151
>gi|32474056|ref|NP_867050.1| restriction endonuclease [Rhodopirellula baltica SH 1]
gi|417304939|ref|ZP_12091933.1| HNH endonuclease domain-containing protein [Rhodopirellula baltica
WH47]
gi|421611419|ref|ZP_16052562.1| HNH endonuclease domain-containing protein [Rhodopirellula baltica
SH28]
gi|440712353|ref|ZP_20892974.1| HNH endonuclease domain-containing protein [Rhodopirellula baltica
SWK14]
gi|32444593|emb|CAD74594.1| restriction endonuclease [Rhodopirellula baltica SH 1]
gi|327538716|gb|EGF25366.1| HNH endonuclease domain-containing protein [Rhodopirellula baltica
WH47]
gi|408497815|gb|EKK02331.1| HNH endonuclease domain-containing protein [Rhodopirellula baltica
SH28]
gi|436442874|gb|ELP35967.1| HNH endonuclease domain-containing protein [Rhodopirellula baltica
SWK14]
Length = 201
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 88/166 (53%), Gaps = 26/166 (15%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYD-QTINSPNGSF--------------- 144
LVL+ Y + VV +RA+ L + + A+V++ D Q I S+
Sbjct: 11 LVLNRFYMAIRVVNVRRALTLLYRDCAEVIDNDDGQFIGYDFDSWCELSQLASDQKQPED 70
Query: 145 -YIPAV---LRVRHLLQVVKRRRIKNN---LSRKNLMYRDNFTCQYCSSRE---NLTIDH 194
YI AV ++V + ++ + R+ +RKNL RD+ TCQYC E L++DH
Sbjct: 71 EYIQAVGFEMKVPRITRLTRFDRMPAQTVRFNRKNLFARDDHTCQYCGKAEPTHKLSLDH 130
Query: 195 VVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPK 240
VVP S GG WEN+V C +CNSRKG +T ++A+M+L P P+
Sbjct: 131 VVPRSHGGGTTWENIVCCCLRCNSRKGGRTPQQAHMKLLSRPIKPR 176
>gi|337288854|ref|YP_004628326.1| HNH endonuclease [Thermodesulfobacterium sp. OPB45]
gi|334902592|gb|AEH23398.1| HNH endonuclease [Thermodesulfobacterium geofontis OPF15]
Length = 199
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 84/164 (51%), Gaps = 27/164 (16%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVL----------EYYDQT----------INSP 140
LVL+ Y+ + + ++AIC A V+ E+ T I SP
Sbjct: 11 LVLNKYYQAIQITTVQKAICHLVKGTAKVITTQWSIHDLDEWIKITKFHENGNSRIIRSP 70
Query: 141 NGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCS----SRENLTIDHVV 196
+ S +P + + + + K + SR+NL+ RD +TCQYC + + TIDHV+
Sbjct: 71 SISILVPDAIYLPYYESLPKVDVV---FSRQNLLLRDKYTCQYCGKLLKNPKERTIDHVI 127
Query: 197 PASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPK 240
P SRGG+ W N+V C KCN +KG +T EEA ++L + PK PK
Sbjct: 128 PKSRGGKTVWTNVVLCCKKCNLKKGDRTPEEAGLKLLKQPKPPK 171
>gi|29833025|ref|NP_827659.1| endonuclease [Streptomyces avermitilis MA-4680]
gi|29610146|dbj|BAC74194.1| putative endonuclease [Streptomyces avermitilis MA-4680]
Length = 168
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 81/150 (54%), Gaps = 4/150 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT-INSPNGSFYIPAVLRVRHLLQVV 159
LVL+ S+ P++ V RA+ L +KA V + + + + +P V+R+ ++V
Sbjct: 5 LVLNASFEPLSTVTLNRAVILVLQDKAVVEQAHPELRMRGAALDIPVPRVIRLCRYVRVP 64
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
RR + SR+ ++ RD C YC R T+DHVVP ++GG+ W N VA+C + N R
Sbjct: 65 FRR--QAPWSRRGVLVRDRHRCAYCGRRAT-TVDHVVPRAQGGQDSWLNTVASCAEDNHR 121
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPL 249
K +T E+A M L R P P D + + L
Sbjct: 122 KAARTPEQAGMPLLRQPFEPTPADAMLLAL 151
>gi|357414203|ref|YP_004925939.1| HNH endonuclease [Streptomyces flavogriseus ATCC 33331]
gi|320011572|gb|ADW06422.1| HNH endonuclease [Streptomyces flavogriseus ATCC 33331]
Length = 168
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 80/150 (53%), Gaps = 4/150 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT-INSPNGSFYIPAVLRVRHLLQVV 159
LVL+ S+ P++ V RA+ L +KA V + + + +P V+R+ ++V
Sbjct: 5 LVLNASFEPLSTVTLNRAVVLILQDKAVVEQSHPGLRMRGAAVDIPVPQVIRLCRYVRVP 64
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
RR SR+ ++ RD C YC R + T+DHVVP ++GG+ W N VA+C + N R
Sbjct: 65 FRRHAP--WSRRGVLIRDQHRCAYCGRRAS-TVDHVVPRAQGGQDTWLNTVASCAEDNHR 121
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPL 249
K +T E+A M L R P P D + + L
Sbjct: 122 KAARTPEQAGMPLLRQPYVPSPADAMLLAL 151
>gi|294628625|ref|ZP_06707185.1| HNH endonuclease domain-containing protein [Streptomyces sp. e14]
gi|292831958|gb|EFF90307.1| HNH endonuclease domain-containing protein [Streptomyces sp. e14]
Length = 168
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 79/151 (52%), Gaps = 6/151 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPA--VLRVRHLLQV 158
LVL+ S+ P++ V RA+ L +KA V+E + IPA V+R+ ++V
Sbjct: 5 LVLNASFEPLSTVTLNRAVVLVLQDKA-VVEQAHPELRMRGAEVDIPAPRVIRLCRYVRV 63
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
RR + SR+ ++ RD C YC SR T+DHVVP SRGG+ W N VA+C N
Sbjct: 64 PFRR--QAPWSRRGVLVRDRHRCAYCGSRAT-TVDHVVPRSRGGQDTWLNTVASCAADNH 120
Query: 219 RKGKKTLEEANMQLSRVPKAPKDYDILAIPL 249
RK +T E+A M L P P D + L
Sbjct: 121 RKADRTPEQAGMPLLWEPFEPTPADAMLFAL 151
>gi|449132304|ref|ZP_21768408.1| HNH endonuclease family protein [Rhodopirellula europaea 6C]
gi|448888514|gb|EMB18830.1| HNH endonuclease family protein [Rhodopirellula europaea 6C]
Length = 242
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 87/166 (52%), Gaps = 26/166 (15%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYD-QTINSPNGSF--------------- 144
LVL+ Y + VV +RA+ L + + A+V++ D Q I S+
Sbjct: 52 LVLNRFYMAIRVVNVRRALTLLYRDCAEVIDNDDGQFIGYDFDSWCELSQLASAQKQPED 111
Query: 145 -YIPAV---LRVRHLLQVVKRRRIKNN---LSRKNLMYRDNFTCQYCSSRE---NLTIDH 194
YI AV ++V + ++ + R+ +RKNL RD+ TCQYC E L++DH
Sbjct: 112 EYIQAVGFEMKVPRITRLTRFDRMPAQTVRFNRKNLFARDDHTCQYCGKAEPTHKLSLDH 171
Query: 195 VVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPK 240
VVP S GG WEN+V C +CNSRKG +T ++A M+L P P+
Sbjct: 172 VVPRSHGGGTTWENIVCCCLRCNSRKGGRTPQQARMKLLSRPIKPR 217
>gi|254392730|ref|ZP_05007903.1| endonuclease [Streptomyces clavuligerus ATCC 27064]
gi|326440419|ref|ZP_08215153.1| putative endonuclease [Streptomyces clavuligerus ATCC 27064]
gi|197706390|gb|EDY52202.1| endonuclease [Streptomyces clavuligerus ATCC 27064]
Length = 169
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 78/148 (52%), Gaps = 4/148 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT-INSPNGSFYIPAVLRVRHLLQVV 159
LVL+ S+ P++ V RA+ L +KA V + + + + +P V+R+ ++V
Sbjct: 5 LVLNASFEPLSTVSLHRAVILVLQDKAVVEQAHPGLRMRAAAVDLPVPQVIRLCRYVRVP 64
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
RR + SR+ ++ RD C YC R T+DHVVP S GG W N VA+C + N R
Sbjct: 65 FRR--QAPWSRRGVLARDQHRCAYCGRRAT-TVDHVVPRSHGGADSWLNTVASCAEDNHR 121
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAI 247
K +T E+A M L R P P D + +
Sbjct: 122 KADRTPEQAGMPLLRQPFVPSPTDAMLL 149
>gi|383765789|ref|YP_005444770.1| hypothetical protein PSMK_07140 [Phycisphaera mikurensis NBRC
102666]
gi|381386057|dbj|BAM02873.1| hypothetical protein PSMK_07140 [Phycisphaera mikurensis NBRC
102666]
Length = 227
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 83/156 (53%), Gaps = 9/156 (5%)
Query: 102 VLDISYRPVNVVCWKR-AICLEFMEKADV-LEYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
V D SY+ + W A L + KAD + +YD + + +P V+R LL
Sbjct: 57 VDDGSYQGHTLESWADVADTLRSLRKADPGVAHYDW-VRTVRADLPVPKVIR---LLGYD 112
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSS---RENLTIDHVVPASRGGEWKWENLVAACFKC 216
K L+R+N+ RD CQYC L++DHVVP S+GG WENLV +C +C
Sbjct: 113 KLPAQGVKLNRRNIFARDKNLCQYCGGSFPTSELSLDHVVPRSQGGGTSWENLVCSCVRC 172
Query: 217 NSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSA 252
NSRKG +T ++A M L VP P+ +L++ + SA
Sbjct: 173 NSRKGGRTPKQAQMPLITVPVRPRRNPVLSVRVGSA 208
>gi|344998830|ref|YP_004801684.1| HNH endonuclease [Streptomyces sp. SirexAA-E]
gi|344314456|gb|AEN09144.1| HNH endonuclease [Streptomyces sp. SirexAA-E]
Length = 168
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 81/151 (53%), Gaps = 6/151 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPA--VLRVRHLLQV 158
LVL+ S+ P++ V RA+ L +KA V+E + + IP V+R+ ++V
Sbjct: 5 LVLNASFEPLSTVTLNRAVVLILQDKA-VVEQSHPGLRMRGAAIDIPVPRVIRLCRYVRV 63
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
RR SR+ ++ RD C YC R + T+DHVVP ++GG+ W N VA+C + N
Sbjct: 64 PFRRHAP--WSRRGVLIRDQHRCAYCGRRAS-TVDHVVPRAQGGQDTWLNTVASCAEDNH 120
Query: 219 RKGKKTLEEANMQLSRVPKAPKDYDILAIPL 249
RK +T E+A M L R P P D + + L
Sbjct: 121 RKAARTPEQAGMPLLRQPFVPTPADAMLLAL 151
>gi|296121458|ref|YP_003629236.1| HNH endonuclease [Planctomyces limnophilus DSM 3776]
gi|296013798|gb|ADG67037.1| HNH endonuclease [Planctomyces limnophilus DSM 3776]
Length = 205
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 82/186 (44%), Gaps = 34/186 (18%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT------------------------ 136
L L+ Y V V+ KRA CL E A+V+ + +
Sbjct: 14 LALNRHYAAVQVISAKRAFCLLAKELAEVISVEEGSYQSLDFGQWLEISQIKASLGDYEE 73
Query: 137 ----INSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCS---SREN 189
+ S + + +P ++R LL + R +R+N+ RD CQYC S
Sbjct: 74 DADWVQSVSFAIQVPKIIR---LLSYDRMPRNAVKFNRRNIFLRDENRCQYCGKKFSLHK 130
Query: 190 LTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPL 249
L++DHV+P SRGG WEN+V +C CN RKG +T EA M+L P P + L
Sbjct: 131 LSLDHVMPKSRGGPTSWENIVCSCLDCNVRKGGRTPHEAGMKLMSTPSKPSRSPTMQQHL 190
Query: 250 TSAAIR 255
S+ R
Sbjct: 191 DSSKYR 196
>gi|225155308|ref|ZP_03723801.1| HNH endonuclease [Diplosphaera colitermitum TAV2]
gi|224803915|gb|EEG22145.1| HNH endonuclease [Diplosphaera colitermitum TAV2]
Length = 205
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYD------------------------QT 136
LVL+ ++ VNVV +RA L A V+ +++ +
Sbjct: 10 LVLNRLWQAVNVVGARRAFALLARGHAGVVHHHEDDFRVFSLLDWMDFSRDNPPVEQWEV 69
Query: 137 INSPNGSFYIPAVLRVRHLLQVVKRRRIKN-NLSRKNLMYRDNFTCQYCSS---RENLTI 192
+++P + +P V+ LL R K L+R N+ RD TCQYC + RE+L +
Sbjct: 70 VHTPRTAIRLPRVI----LLTWFDRLPCKELKLTRNNVFERDKDTCQYCGNVFDREDLNL 125
Query: 193 DHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTS 251
DHV+P RGG WEN+V +C +CNS K + EA M+L R P PK ++++ L +
Sbjct: 126 DHVIPRDRGGRTTWENIVCSCIRCNSHKANRLPHEARMRLIRKPVKPKWRPVISLVLNN 184
>gi|115379087|ref|ZP_01466212.1| restriction endonuclease [Stigmatella aurantiaca DW4/3-1]
gi|310821067|ref|YP_003953425.1| HNH endonuclease domain-containing protein [Stigmatella aurantiaca
DW4/3-1]
gi|115363914|gb|EAU63024.1| restriction endonuclease [Stigmatella aurantiaca DW4/3-1]
gi|309394139|gb|ADO71598.1| HNH endonuclease domain protein [Stigmatella aurantiaca DW4/3-1]
Length = 197
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 90/182 (49%), Gaps = 26/182 (14%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVL-------EYYD--------QTINSPNGSFY 145
LVL+ +Y+PV+V KRA L + A + E+ D I + N +
Sbjct: 7 LVLNRNYQPVHVTSVKRAFSLLYQGVAKAIDDQYKLYEFDDWAALSTTGDCIVTVNRAIR 66
Query: 146 IPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGG 202
+P VL V + + + R++ SR N+ RD+ TCQYC R L +DHV P GG
Sbjct: 67 VPRVL-VLSAYEYLPKGRVR--FSRLNIYARDHDTCQYCGRTLPRSELNLDHVNPRCEGG 123
Query: 203 EWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKG 262
+ WEN+V +C CN RKG +T E A M+L R P P+ PL AIR + R+
Sbjct: 124 KTTWENVVCSCVPCNLRKGGRTPERAGMKLLRRPFRPR-----WTPLFRGAIRRVTYREW 178
Query: 263 TP 264
P
Sbjct: 179 LP 180
>gi|297195186|ref|ZP_06912584.1| endonuclease [Streptomyces pristinaespiralis ATCC 25486]
gi|297152673|gb|EDY66062.2| endonuclease [Streptomyces pristinaespiralis ATCC 25486]
Length = 170
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 78/152 (51%), Gaps = 4/152 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT-INSPNGSFYIPAVLRVRHLLQVV 159
LVL+ S+ P++ V RA+ L +KA V + + + + +P V+R+ ++V
Sbjct: 5 LVLNASFEPLSTVTLNRAVVLVLQDKAVVEQSHPALRVRAAAVDLPVPRVIRLCRYVRVP 64
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
RR + SR ++ RD C YC R T+DHVVP S GG W N VA+C + N R
Sbjct: 65 FRR--QAPWSRPGVLVRDQHRCAYCGRRAT-TVDHVVPKSHGGADSWLNTVASCAEDNHR 121
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTS 251
K +T E+A M L P P D + + L S
Sbjct: 122 KADRTPEQAGMPLLHEPFVPSPADAMLLGLRS 153
>gi|329940697|ref|ZP_08289977.1| HNH endonuclease domain-containing protein [Streptomyces
griseoaurantiacus M045]
gi|329299991|gb|EGG43889.1| HNH endonuclease domain-containing protein [Streptomyces
griseoaurantiacus M045]
Length = 168
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 80/159 (50%), Gaps = 6/159 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPA--VLRVRHLLQV 158
LVL+ S+ P++ V RA+ L KA V+E + IPA V+R+ ++V
Sbjct: 5 LVLNASFEPLSTVTLNRAVVLVLQAKA-VVEQAHPGLRMRGALVDIPAPRVIRLCRYVRV 63
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
RR + SR+ ++ RD C YC R T+DHVVP SRGG W N VA+C + N
Sbjct: 64 PFRR--QAPWSRRGVLVRDRHRCAYCGGRAT-TVDHVVPRSRGGGDTWLNTVASCAEDNH 120
Query: 219 RKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRML 257
RK +T E+A M L P P D + + L + L
Sbjct: 121 RKADRTPEQAGMPLLTRPFEPTPADAMLLALGQGDVEAL 159
>gi|239820808|ref|YP_002947993.1| HNH endonuclease [Variovorax paradoxus S110]
gi|239805661|gb|ACS22727.1| HNH endonuclease [Variovorax paradoxus S110]
Length = 187
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Query: 168 LSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R+ L RD F C YC+ R ++LT +H+VP SRGG W W NLVAAC CNS K +T
Sbjct: 81 FNRRKLFVRDRFICAYCAQRFREQDLTCEHIVPESRGGTWDWMNLVAACRACNSEKADRT 140
Query: 225 LEEANMQLSRVPKAPKDYD 243
EEA M+L +P P ++
Sbjct: 141 PEEAGMKLVYLPYVPSRWE 159
>gi|411004421|ref|ZP_11380750.1| endonuclease [Streptomyces globisporus C-1027]
Length = 170
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 13/169 (7%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPA--VLRVRHLLQV 158
LVL+ S+ P++ V RA+ L +KA V+E + + IPA V+R+ ++V
Sbjct: 5 LVLNASFEPLSTVTLNRAVVLILTDKA-VVEQSHPELRMRGAAVDIPAPRVIRLCRYVRV 63
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
RR + SR+ ++ RD C YC R + T+DHVVP ++GG+ W N VA+C + N
Sbjct: 64 PFRR--QAPWSRRGVLIRDQHRCAYCGRRAS-TVDHVVPRAQGGQDTWLNTVASCAEDNH 120
Query: 219 RKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEW 267
RK +T E+A M L + P P + + + + + R G P EW
Sbjct: 121 RKAARTPEQAGMPLLKQPFVPSPAEAMLLAMGAGD------RAGLP-EW 162
>gi|291443698|ref|ZP_06583088.1| endonuclease [Streptomyces roseosporus NRRL 15998]
gi|291346645|gb|EFE73549.1| endonuclease [Streptomyces roseosporus NRRL 15998]
Length = 171
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 83/151 (54%), Gaps = 6/151 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPA--VLRVRHLLQV 158
LVL+ S+ P++ V RA+ L +KA V+E + + IPA V+R+ ++V
Sbjct: 8 LVLNASFEPLSTVTLNRAVVLILTDKA-VVEQSHPELRMRGAAVDIPAPRVIRLCRYVRV 66
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
RR + SR+ ++ RD C YC R + T+DHVVP ++GG+ W N VA+C + N
Sbjct: 67 PFRR--QAPWSRRGVLIRDQHRCAYCGRRAS-TVDHVVPRAQGGQDTWLNTVASCAEDNH 123
Query: 219 RKGKKTLEEANMQLSRVPKAPKDYDILAIPL 249
RK +T E+A M L + P P + + + +
Sbjct: 124 RKAARTPEQAGMPLLKQPFVPSPAEAMLLAM 154
>gi|317125194|ref|YP_004099306.1| HNH endonuclease [Intrasporangium calvum DSM 43043]
gi|315589282|gb|ADU48579.1| HNH endonuclease [Intrasporangium calvum DSM 43043]
Length = 165
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 64/125 (51%), Gaps = 11/125 (8%)
Query: 142 GSFYIPAVLR-VRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASR 200
G + +P V+R VR++ Q R + SR+ ++ RD C YC T+DHV+P SR
Sbjct: 43 GPYQVPLVVRLVRYVEQKWLYSRTRATYSREGVLLRDRGQCAYCGRFAATTMDHVLPRSR 102
Query: 201 GGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVR 260
GG W N VAAC CN RKG +T EEA++ L P P T A +R R
Sbjct: 103 GGATSWLNAVAACDDCNGRKGDRTPEEAHLPLRWQPYVP----------TRAQLRFARHA 152
Query: 261 KGTPV 265
GTP
Sbjct: 153 TGTPT 157
>gi|239986754|ref|ZP_04707418.1| putative endonuclease [Streptomyces roseosporus NRRL 11379]
Length = 168
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 83/151 (54%), Gaps = 6/151 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPA--VLRVRHLLQV 158
LVL+ S+ P++ V RA+ L +KA V+E + + IPA V+R+ ++V
Sbjct: 5 LVLNASFEPLSTVTLNRAVVLILTDKA-VVEQSHPELRMRGAAVDIPAPRVIRLCRYVRV 63
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
RR + SR+ ++ RD C YC R + T+DHVVP ++GG+ W N VA+C + N
Sbjct: 64 PFRR--QAPWSRRGVLIRDQHRCAYCGRRAS-TVDHVVPRAQGGQDTWLNTVASCAEDNH 120
Query: 219 RKGKKTLEEANMQLSRVPKAPKDYDILAIPL 249
RK +T E+A M L + P P + + + +
Sbjct: 121 RKAARTPEQAGMPLLKQPFVPSPAEAMLLAM 151
>gi|365860081|ref|ZP_09399905.1| putative endonuclease [Streptomyces sp. W007]
gi|364010499|gb|EHM31415.1| putative endonuclease [Streptomyces sp. W007]
Length = 185
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 83/151 (54%), Gaps = 6/151 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPA--VLRVRHLLQV 158
LVL+ S+ P++ V RA+ L +KA V+E + + IPA V+R+ ++V
Sbjct: 21 LVLNASFEPLSTVTLNRAVVLILTDKA-VVEQSHPELRMRGAAVDIPAPRVIRLCRYVRV 79
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
RR + SR+ ++ RD C YC R + T+DHVVP ++GG+ W N VA+C + N
Sbjct: 80 PFRR--QAPWSRRGVLIRDQHRCAYCGRRAS-TVDHVVPRAQGGKDTWLNTVASCAEDNH 136
Query: 219 RKGKKTLEEANMQLSRVPKAPKDYDILAIPL 249
RK +T E+A M L + P P + + + +
Sbjct: 137 RKAARTPEQAGMPLLKQPFVPSPAEAMLLAM 167
>gi|442321541|ref|YP_007361562.1| HNH endonuclease domain-containing protein [Myxococcus stipitatus
DSM 14675]
gi|441489183|gb|AGC45878.1| HNH endonuclease domain-containing protein [Myxococcus stipitatus
DSM 14675]
Length = 197
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 93/189 (49%), Gaps = 31/189 (16%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVL-------EYYD--------QTINSPNGSFY 145
LVL+ Y+PV+V KRA L + A + E+ D I + N +
Sbjct: 7 LVLNRYYQPVHVTSVKRAFSLLYQGVAKAIDAQYRLYEFDDWAALSATNDCITTINRTIR 66
Query: 146 IPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSS---RENLTIDHVVPASRGG 202
+P VL V + R R++ SR N+ RD TCQYC R L +DHV+P ++GG
Sbjct: 67 VPRVL-VLSAYDHLPRGRVR--FSRLNIYARDADTCQYCGKNLPRSELNLDHVMPRTQGG 123
Query: 203 EWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKG 262
+ WEN+V +C CN +KG +T E+A+M+L + P P+ PL A RK
Sbjct: 124 KTTWENVVCSCVPCNLKKGGRTPEQADMRLLKKPVRPR-----WTPLFRGA-----TRKV 173
Query: 263 TPVEWRQYL 271
T EW +L
Sbjct: 174 TYQEWLPFL 182
>gi|218460997|ref|ZP_03501088.1| putative endonuclease protein [Rhizobium etli Kim 5]
Length = 131
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 63/107 (58%), Gaps = 4/107 (3%)
Query: 138 NSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVP 197
+SP+ S +P+V+ ++ +Q + +R N+ D F CQYC + ++LT DHV+P
Sbjct: 1 SSPSFSMRLPSVVCLKTYVQPSRNPA----FTRFNVFLGDRFECQYCGAHDDLTFDHVIP 56
Query: 198 ASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDI 244
+ GGE WEN+VAAC CN RKG K ++A M S+ P P D+
Sbjct: 57 RAHGGETTWENVVAACSPCNLRKGSKLPKQAGMFPSQKPYQPTVQDL 103
>gi|408677150|ref|YP_006876977.1| HNH endonuclease family protein [Streptomyces venezuelae ATCC
10712]
gi|328881479|emb|CCA54718.1| HNH endonuclease family protein [Streptomyces venezuelae ATCC
10712]
Length = 168
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 80/153 (52%), Gaps = 4/153 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYY-DQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ S+ P++ V RA+ L +KA V + D + +P V+R+ ++V
Sbjct: 5 LVLNASFEPLSTVTLNRAVVLVLTDKAVVEHAHPDLRVRGAAVDLPVPRVIRLCRYVRVP 64
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
RR + SR+ ++ RD C YC R T+DHVVP ++GG W N VA+C + N R
Sbjct: 65 FRR--QAPWSRRGVLVRDQHRCAYCGRRAT-TVDHVVPRAQGGGDTWLNTVASCAEDNHR 121
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSA 252
K +T E+A M L P P D + + + ++
Sbjct: 122 KADRTPEQAGMPLLHQPFEPTPADAMLLAMRAS 154
>gi|168699197|ref|ZP_02731474.1| restriction endonuclease [Gemmata obscuriglobus UQM 2246]
Length = 211
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 84/180 (46%), Gaps = 33/180 (18%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYY--------------------------- 133
LVL+ ++ V+V+ +RA CL A+V+
Sbjct: 14 LVLNKTFMAVHVISVRRAFCLLCKNLAEVVSMEEGQFATYSFESWSELSAFRAANFRQED 73
Query: 134 DQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENL 190
D + + + P V+R LL K + +R+N+ RD+ CQYC + L
Sbjct: 74 DDWVRTASSELLSPRVVR---LLGYDKMPKQTVKFNRRNIFARDHNQCQYCGKKFPTTEL 130
Query: 191 TIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLT 250
++DHV P S+GG W+N+V AC CN RKG +T +ANM L R P+ PK +L + LT
Sbjct: 131 SLDHVTPRSQGGGTTWDNIVCACVDCNVRKGGRTPRQANMTLIRKPEKPKRSPLLNLKLT 190
>gi|91201720|emb|CAJ74780.1| conserved hypothetical protein [Candidatus Kuenenia
stuttgartiensis]
Length = 211
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 74/140 (52%), Gaps = 16/140 (11%)
Query: 137 INSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTID 193
+ + + S +P ++R LL K + +R+N+ RD CQYC R L+ D
Sbjct: 77 VKTVSFSIEVPKIIR---LLTYDKFPQSSLKFNRRNIFARDENKCQYCGKRFPVSELSFD 133
Query: 194 HVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAA 253
HV+P + G+ WEN+V AC +CN RKG +T E+A M+L+R+P PK +L
Sbjct: 134 HVIPRAHDGKTTWENVVCACTECNKRKGGRTPEQAGMKLTRIPVKPKHSPVL-------- 185
Query: 254 IRMLRVRKGTPVEWRQYLPQ 273
L++R W+Q+L +
Sbjct: 186 --RLKLRFEKYESWKQFLDE 203
>gi|386387273|ref|ZP_10072308.1| HNH endonuclease [Streptomyces tsukubaensis NRRL18488]
gi|385665261|gb|EIF88969.1| HNH endonuclease [Streptomyces tsukubaensis NRRL18488]
Length = 170
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 77/150 (51%), Gaps = 4/150 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT-INSPNGSFYIPAVLRVRHLLQVV 159
LVL+ S+ P++ V RA+ L +KA V + + + +P V+R+ ++V
Sbjct: 5 LVLNASFEPLSTVSMNRAVVLVLQDKAVVEQAHPGLRVRGATVDLPVPRVIRLCRYVRVP 64
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
RR + SR+ ++ RD C YC R T+DHVVP S GG W N VA+C + N R
Sbjct: 65 FRR--QAPWSRRGVLVRDQHRCAYCGRRAT-TVDHVVPRSHGGGDTWLNTVASCSEDNHR 121
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAIPL 249
K +T E+A M L P P D + + L
Sbjct: 122 KADRTPEQAAMPLLHQPFVPSPADAMLLGL 151
>gi|386811548|ref|ZP_10098773.1| endonuclease [planctomycete KSU-1]
gi|386403818|dbj|GAB61654.1| endonuclease [planctomycete KSU-1]
Length = 211
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 92/203 (45%), Gaps = 45/203 (22%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNG------SFY--------- 145
LVL+ + ++VV KRA L E A+V+ D +S N S Y
Sbjct: 12 LVLNKFFMALHVVSAKRAFALLCKETAEVISIDDGKFSSYNFENWKDVSLYKAKSGLPEE 71
Query: 146 --------------IPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR---E 188
+P ++R LL K + +R+N+ RD CQYC R
Sbjct: 72 DNVSWIRTVSFEIEVPKIIR---LLFYDKLPQSSVKFNRRNIFARDENKCQYCGQRFPTS 128
Query: 189 NLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIP 248
L++DH+VP + G+ W N+V AC +CN +KG +T E+A M+L R P PK IL++
Sbjct: 129 ELSLDHIVPKTYHGKTTWTNIVCACTECNKKKGGRTPEQAGMRLKRKPVKPKHSPILSLK 188
Query: 249 LTSAAIRMLRVRKGTPVEWRQYL 271
L S R W+Q+L
Sbjct: 189 LRSDKYR----------SWKQFL 201
>gi|417860724|ref|ZP_12505779.1| hypothetical protein Agau_L100072 [Agrobacterium tumefaciens F2]
gi|338821128|gb|EGP55097.1| hypothetical protein Agau_L100072 [Agrobacterium tumefaciens F2]
Length = 125
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 58/99 (58%), Gaps = 4/99 (4%)
Query: 146 IPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWK 205
+P+V+ ++ +Q + +R N+ RD F CQYC +R+ LT DHVVP + GGE
Sbjct: 3 LPSVVSLKTYVQPTR----NPAFTRFNVFLRDKFECQYCGTRDELTFDHVVPRAHGGETT 58
Query: 206 WENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDI 244
W N+VAAC CN RKG K ++A M ++ P P D+
Sbjct: 59 WHNVVAACSPCNLRKGSKLPKQAGMFPAQKPFQPTVQDL 97
>gi|284034575|ref|YP_003384506.1| HNH endonuclease [Kribbella flavida DSM 17836]
gi|283813868|gb|ADB35707.1| HNH endonuclease [Kribbella flavida DSM 17836]
Length = 147
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 77/147 (52%), Gaps = 4/147 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLR-VRHLLQVV 159
+VL+ SY P++ V + AI + E A V E + + P F +P VLR VR+++
Sbjct: 4 IVLNASYEPLHTVSIQHAIRMLVREVAVVEEAHGERYIGP---FPVPRVLRLVRYVVTHW 60
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ + S+ ++ RD F C YC T+DHV P SRGG +W N VAA CN R
Sbjct: 61 RYAAGRMKYSKHGVLRRDRFRCAYCGLDNADTMDHVQPRSRGGRTEWLNAVAAHAACNER 120
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILA 246
KG +T EA M L P P ++++
Sbjct: 121 KGNRTPAEAGMPLLWQPWVPTRAELVS 147
>gi|258652621|ref|YP_003201777.1| HNH endonuclease [Nakamurella multipartita DSM 44233]
gi|258555846|gb|ACV78788.1| HNH endonuclease [Nakamurella multipartita DSM 44233]
Length = 160
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 75/138 (54%), Gaps = 2/138 (1%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYY-DQTINSPNGSFYIPAVLRVRHLLQVV 159
L+ + SY+ ++ + W+RA+ L +A+ +E + + S + S +P ++R+R V
Sbjct: 5 LLTNASYQVLSRIDWQRAVVLVVTGEAEPIESHPTDVVRSQHLSIPLPTIVRLREYRSVT 64
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R S + + RD C YC + T+DHV+P SRGG W+NLV AC CN+R
Sbjct: 65 FRAVESRRPSNRQIQLRDGRRCAYCGGPGD-TVDHVLPRSRGGADHWDNLVCACRACNNR 123
Query: 220 KGKKTLEEANMQLSRVPK 237
K +T EA M+L P+
Sbjct: 124 KADQTPLEAGMRLRWSPR 141
>gi|182439495|ref|YP_001827214.1| endonuclease [Streptomyces griseus subsp. griseus NBRC 13350]
gi|326780159|ref|ZP_08239424.1| HNH endonuclease [Streptomyces griseus XylebKG-1]
gi|178468011|dbj|BAG22531.1| putative endonuclease [Streptomyces griseus subsp. griseus NBRC
13350]
gi|326660492|gb|EGE45338.1| HNH endonuclease [Streptomyces griseus XylebKG-1]
Length = 170
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 83/151 (54%), Gaps = 6/151 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPA--VLRVRHLLQV 158
LVL+ S+ P++ V RA+ L +KA V+E + + IPA V+R+ ++V
Sbjct: 5 LVLNASFEPLSTVTLNRAVVLILTDKA-VVEQSHPELRMRGAAVDIPAPRVIRLCRYVRV 63
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS 218
RR + SR+ ++ RD C YC R + T+DHVVP ++GG+ W N VA+C + N
Sbjct: 64 PFRR--QAPWSRRGVLIRDQHRCAYCGRRAS-TVDHVVPRAQGGQDTWLNTVASCAEDNH 120
Query: 219 RKGKKTLEEANMQLSRVPKAPKDYDILAIPL 249
RK +T ++A M L + P P + + + +
Sbjct: 121 RKAARTPDQAGMPLLKQPFVPSPAEAMLLAM 151
>gi|182415514|ref|YP_001820580.1| HNH endonuclease [Opitutus terrae PB90-1]
gi|177842728|gb|ACB76980.1| HNH endonuclease [Opitutus terrae PB90-1]
Length = 205
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 89/184 (48%), Gaps = 32/184 (17%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYD------------------------QT 136
LVL+ ++ VNV+ +RA L A V+ +++ +T
Sbjct: 10 LVLNRLWQAVNVIGARRAFGLLARGHAQVVHHHEDDFRTFALLDWIDFSTHNPPIAELET 69
Query: 137 INSPNGSFYIPAVLRVRHLLQVVKRRRIKN-NLSRKNLMYRDNFTCQYCS---SRENLTI 192
+ +P + +P V+ LL + K L+R N+ RD TCQYC RE L +
Sbjct: 70 VRTPTRTIRLPRVI----LLTFFDKLPCKELKLTRNNIFERDKNTCQYCGRIFPREQLNL 125
Query: 193 DHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSA 252
DHV+P GG+ WEN+V +C KCN++K + EA+++L R P PK ++++ L +
Sbjct: 126 DHVIPRDYGGKTTWENIVCSCVKCNTKKANRLPHEAHLRLIRKPSRPKWRPVISLVLGTQ 185
Query: 253 AIRM 256
M
Sbjct: 186 HREM 189
>gi|398336796|ref|ZP_10521501.1| restriction endonuclease [Leptospira kmetyi serovar Malaysia str.
Bejo-Iso9]
Length = 184
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 31/188 (16%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVL-EYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ Y P+ + K A+ L +EKA ++ + + I S F P ++ +R +V
Sbjct: 9 LVLNAGYVPIGIRSVKDALILIILEKAQLIKDDKNFLIRSEKLKFTAPRIILLRDYYRVP 68
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWK----------- 205
RR + +SR+N+ RDN+ C YC + LT+DHV+P SR W+
Sbjct: 69 PRR---DRVSRENIFQRDNYHCVYCGKKFPGSKLTLDHVIPRSR---WEHVPKKERPKEF 122
Query: 206 --WENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGT 263
WENLVAAC CN+RKG K L E L P+ + L PL S + ++
Sbjct: 123 NSWENLVAACKHCNTRKGNKLLAELKWNL---PEENRVTPKLRFPLFSIS-----DQQAE 174
Query: 264 PVEWRQYL 271
WR+Y+
Sbjct: 175 KFGWREYI 182
>gi|311742134|ref|ZP_07715944.1| HNH endonuclease domain protein [Aeromicrobium marinum DSM 15272]
gi|311314627|gb|EFQ84534.1| HNH endonuclease domain protein [Aeromicrobium marinum DSM 15272]
Length = 144
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 73/140 (52%), Gaps = 8/140 (5%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLR-VRHLLQVV 159
LVL+ SY P+ V + AI + E A + E T G F P VLR VR+++
Sbjct: 7 LVLNASYEPLQRVSLRHAIKMLVREVAVIEEEAGGTY----GPFPRPKVLRLVRYVVTRW 62
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
RR ++L K+ + + C YC T+DH++P SRGG W+N VAAC +CN R
Sbjct: 63 MHRR--SHLCTKSAIKARDTMCAYCRGPAE-TVDHIIPRSRGGTLTWDNAVAACVRCNHR 119
Query: 220 KGKKTLEEANMQLSRVPKAP 239
K +T EA M L VP P
Sbjct: 120 KADRTPAEAGMTLLLVPSRP 139
>gi|410941350|ref|ZP_11373149.1| HNH endonuclease domain protein [Leptospira noguchii str.
2006001870]
gi|410783909|gb|EKR72901.1| HNH endonuclease domain protein [Leptospira noguchii str.
2006001870]
Length = 184
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 31/188 (16%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVL-EYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ Y P+ + K A+ L +EKA ++ + + I S F P ++ +R +V
Sbjct: 9 LVLNAGYVPIGIRSVKDALILIILEKAQLIKDDKNLFIRSEKLKFTAPRIILLRDYYKVP 68
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWK----------- 205
R K+ +SR+N+ RDN+ C YC + LT+DHV+P SR W+
Sbjct: 69 PR---KDKVSRENIFQRDNYHCVYCGKKFPSSKLTLDHVIPRSR---WEHVPKKERPKEF 122
Query: 206 --WENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGT 263
WENLVAAC CN+RKG K L E L P+ + L PL S + ++
Sbjct: 123 NSWENLVAACKNCNTRKGNKLLAELKWNL---PEENRVTPKLRFPLFS-----ITDQQAE 174
Query: 264 PVEWRQYL 271
WR+Y+
Sbjct: 175 KFGWREYI 182
>gi|433679745|ref|ZP_20511442.1| hypothetical protein BN444_03776 [Xanthomonas translucens pv.
translucens DSM 18974]
gi|430815153|emb|CCP42049.1| hypothetical protein BN444_03776 [Xanthomonas translucens pv.
translucens DSM 18974]
Length = 221
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 94 ELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVR 153
L R L LD R ++ + W+ A CL + A + ++ G V
Sbjct: 33 HLPSVRLLSLDAHGRVLDWINWQSAACL-YARGAVAWTLGEPCMHIHGGMSRASGERSVL 91
Query: 154 HLLQVVKRRRIKNN--------LSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGG 202
HL ++ R + L+ L RD C YC SR +LT DHV+P S+GG
Sbjct: 92 HLHPIIAARGHARSRALDPTPTLTNTALFARDAQLCLYCGQQFSRPHLTRDHVMPVSKGG 151
Query: 203 EWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
WEN+V ACF CNSRKG +T ++A+M L VP P
Sbjct: 152 RDTWENVVTACFHCNSRKGNRTPQQASMPLLAVPYRP 188
>gi|254446534|ref|ZP_05060010.1| HNH endonuclease domain protein [Verrucomicrobiae bacterium DG1235]
gi|198260842|gb|EDY85150.1| HNH endonuclease domain protein [Verrucomicrobiae bacterium DG1235]
Length = 185
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 59/92 (64%), Gaps = 5/92 (5%)
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFK 215
V R+ +K L+R+N+ RD +TCQYC+ + E+L +DHV+P GG+ WEN+V +C K
Sbjct: 71 VPRKELK--LTRQNVFDRDKYTCQYCAKKMRSEDLNLDHVIPRHYGGKTTWENIVCSCIK 128
Query: 216 CNSRKGKKTLEEANMQLSRVPKAPKDYDILAI 247
CNS K + EA M+L R P P+ ++++
Sbjct: 129 CNSHKANRLPHEAKMRLIRKPSIPRWRPVISL 160
>gi|398339068|ref|ZP_10523771.1| HNH family endonuclease [Leptospira kirschneri serovar Bim str.
1051]
gi|418676941|ref|ZP_13238219.1| HNH endonuclease domain protein [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|418688420|ref|ZP_13249576.1| HNH endonuclease domain protein [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|418696580|ref|ZP_13257589.1| HNH endonuclease domain protein [Leptospira kirschneri str. H1]
gi|418739801|ref|ZP_13296182.1| HNH endonuclease domain protein [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
gi|421089080|ref|ZP_15549895.1| HNH endonuclease domain protein [Leptospira kirschneri str.
200802841]
gi|421130913|ref|ZP_15591104.1| HNH endonuclease domain protein [Leptospira kirschneri str.
2008720114]
gi|400322841|gb|EJO70697.1| HNH endonuclease domain protein [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|409956109|gb|EKO15041.1| HNH endonuclease domain protein [Leptospira kirschneri str. H1]
gi|410002201|gb|EKO52723.1| HNH endonuclease domain protein [Leptospira kirschneri str.
200802841]
gi|410357717|gb|EKP04937.1| HNH endonuclease domain protein [Leptospira kirschneri str.
2008720114]
gi|410737277|gb|EKQ82019.1| HNH endonuclease domain protein [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|410752923|gb|EKR09895.1| HNH endonuclease domain protein [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
Length = 184
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 31/188 (16%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVL-EYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ Y P+ + K A+ L +EKA ++ + + I S F P ++ +R +V
Sbjct: 9 LVLNAGYVPIGIRSVKDALILIILEKAQLIKDDKNLFIRSEKLRFTAPRIILLRDYYKVP 68
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWK----------- 205
R K+ +SR+N+ RDN+ C YC + LT+DHV+P SR W+
Sbjct: 69 PR---KDKVSRENIFQRDNYHCVYCGKKFPSSKLTLDHVIPRSR---WEHVPKKERPKEF 122
Query: 206 --WENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGT 263
WENLVAAC CN+RKG K L E L P+ + L PL S + ++
Sbjct: 123 NSWENLVAACKNCNTRKGNKLLAELKWNL---PEENRVTPKLRFPLFS-----ITDQQAE 174
Query: 264 PVEWRQYL 271
WR+Y+
Sbjct: 175 KFGWREYI 182
>gi|398333646|ref|ZP_10518351.1| restriction endonuclease [Leptospira alexanderi serovar Manhao 3
str. L 60]
Length = 184
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 31/188 (16%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVL-EYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ Y P+ + K A+ L +EKA ++ + + I S F P ++ +R +V
Sbjct: 9 LVLNAGYVPIGIRSVKDALILIILEKAQLIKDDKNFLIRSEKLKFTAPRIILLRDYYRVP 68
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWK----------- 205
RR + +SR+N+ RDN+ C YC + LT+DHV+P SR W+
Sbjct: 69 PRR---DRVSRENIFQRDNYHCVYCRKKFPSTKLTLDHVIPRSR---WEHVPKKERPKEF 122
Query: 206 --WENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGT 263
WENLVAAC CN+RKG K L E L P+ + L PL S + ++
Sbjct: 123 NSWENLVAACRHCNTRKGNKLLTELKWNL---PEENRVTPKLRFPLYSIS-----DQQAE 174
Query: 264 PVEWRQYL 271
WR+Y+
Sbjct: 175 KFGWREYI 182
>gi|359685957|ref|ZP_09255958.1| restriction endonuclease [Leptospira santarosai str. 2000030832]
gi|418755401|ref|ZP_13311606.1| HNH endonuclease domain protein [Leptospira santarosai str. MOR084]
gi|422004358|ref|ZP_16351577.1| restriction endonuclease [Leptospira santarosai serovar Shermani
str. LT 821]
gi|409964196|gb|EKO32088.1| HNH endonuclease domain protein [Leptospira santarosai str. MOR084]
gi|417256939|gb|EKT86348.1| restriction endonuclease [Leptospira santarosai serovar Shermani
str. LT 821]
Length = 177
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 92/188 (48%), Gaps = 31/188 (16%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVL-EYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ Y P+ + K A+ L +EKA ++ + + I S F P ++ +R +V
Sbjct: 2 LVLNAGYVPIGIRSVKDALILIILEKAQLIKDDKNLLIRSEKLKFTAPRIILLRDYYRVP 61
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWK----------- 205
R K+ +SR+N+ RDN+ C YC + LT+DH++P SR W+
Sbjct: 62 PR---KDRVSRENIFQRDNYHCVYCRKKFPGSKLTLDHIIPRSR---WEHVPKKERPKEF 115
Query: 206 --WENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGT 263
WENLVAAC CN+RKG K L E L P+ + L PL S + ++
Sbjct: 116 NSWENLVAACRHCNTRKGNKLLAELKWNL---PEENRVTPKLRFPLFSIS-----DQQAE 167
Query: 264 PVEWRQYL 271
WR+Y+
Sbjct: 168 KFGWREYI 175
>gi|24214976|ref|NP_712457.1| HNH family endonuclease [Leptospira interrogans serovar Lai str.
56601]
gi|45657531|ref|YP_001617.1| HNH endonuclease family protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|386074317|ref|YP_005988634.1| HNH family endonuclease [Leptospira interrogans serovar Lai str.
IPAV]
gi|417761210|ref|ZP_12409224.1| HNH endonuclease domain protein [Leptospira interrogans str.
2002000624]
gi|417765945|ref|ZP_12413901.1| HNH endonuclease domain protein [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|417772165|ref|ZP_12420054.1| HNH endonuclease domain protein [Leptospira interrogans serovar
Pomona str. Pomona]
gi|417777611|ref|ZP_12425428.1| HNH endonuclease domain protein [Leptospira interrogans str.
2002000621]
gi|417783014|ref|ZP_12430737.1| HNH endonuclease domain protein [Leptospira interrogans str.
C10069]
gi|418671720|ref|ZP_13233069.1| HNH endonuclease domain protein [Leptospira interrogans str.
2002000623]
gi|418681170|ref|ZP_13242403.1| HNH endonuclease domain protein [Leptospira interrogans serovar
Pomona str. Kennewicki LC82-25]
gi|418692363|ref|ZP_13253441.1| HNH endonuclease domain protein [Leptospira interrogans str.
FPW2026]
gi|418698190|ref|ZP_13259169.1| HNH endonuclease domain protein [Leptospira interrogans serovar
Bataviae str. L1111]
gi|418703487|ref|ZP_13264371.1| HNH endonuclease domain protein [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|418710990|ref|ZP_13271756.1| HNH endonuclease domain protein [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|418717851|ref|ZP_13277390.1| HNH endonuclease domain protein [Leptospira interrogans str. UI
08452]
gi|418726235|ref|ZP_13284846.1| HNH endonuclease domain protein [Leptospira interrogans str. UI
12621]
gi|418730576|ref|ZP_13289070.1| HNH endonuclease domain protein [Leptospira interrogans str. UI
12758]
gi|421085862|ref|ZP_15546713.1| HNH endonuclease domain protein [Leptospira santarosai str.
HAI1594]
gi|421102598|ref|ZP_15563202.1| HNH endonuclease domain protein [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|421117525|ref|ZP_15577885.1| HNH endonuclease domain protein [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
gi|421121985|ref|ZP_15582273.1| HNH endonuclease domain protein [Leptospira interrogans str. Brem
329]
gi|421123947|ref|ZP_15584217.1| HNH endonuclease domain protein [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|421136362|ref|ZP_15596469.1| HNH endonuclease domain protein [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|24196017|gb|AAN49475.1| HNH family endonuclease [Leptospira interrogans serovar Lai str.
56601]
gi|45600770|gb|AAS70254.1| HNH endonuclease family [Leptospira interrogans serovar Copenhageni
str. Fiocruz L1-130]
gi|353458106|gb|AER02651.1| HNH family endonuclease [Leptospira interrogans serovar Lai str.
IPAV]
gi|400326991|gb|EJO79247.1| HNH endonuclease domain protein [Leptospira interrogans serovar
Pomona str. Kennewicki LC82-25]
gi|400351884|gb|EJP04097.1| HNH endonuclease domain protein [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|400357596|gb|EJP13716.1| HNH endonuclease domain protein [Leptospira interrogans str.
FPW2026]
gi|409943204|gb|EKN88807.1| HNH endonuclease domain protein [Leptospira interrogans str.
2002000624]
gi|409945536|gb|EKN95551.1| HNH endonuclease domain protein [Leptospira interrogans serovar
Pomona str. Pomona]
gi|409953715|gb|EKO08211.1| HNH endonuclease domain protein [Leptospira interrogans str.
C10069]
gi|409960145|gb|EKO23899.1| HNH endonuclease domain protein [Leptospira interrogans str. UI
12621]
gi|410010859|gb|EKO68990.1| HNH endonuclease domain protein [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
gi|410019472|gb|EKO86290.1| HNH endonuclease domain protein [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|410344972|gb|EKO96107.1| HNH endonuclease domain protein [Leptospira interrogans str. Brem
329]
gi|410367712|gb|EKP23096.1| HNH endonuclease domain protein [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410431427|gb|EKP75787.1| HNH endonuclease domain protein [Leptospira santarosai str.
HAI1594]
gi|410438434|gb|EKP87520.1| HNH endonuclease domain protein [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|410572598|gb|EKQ35663.1| HNH endonuclease domain protein [Leptospira interrogans str.
2002000621]
gi|410581418|gb|EKQ49230.1| HNH endonuclease domain protein [Leptospira interrogans str.
2002000623]
gi|410762894|gb|EKR29053.1| HNH endonuclease domain protein [Leptospira interrogans serovar
Bataviae str. L1111]
gi|410766623|gb|EKR37306.1| HNH endonuclease domain protein [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|410768590|gb|EKR43837.1| HNH endonuclease domain protein [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|410774785|gb|EKR54789.1| HNH endonuclease domain protein [Leptospira interrogans str. UI
12758]
gi|410786724|gb|EKR80462.1| HNH endonuclease domain protein [Leptospira interrogans str. UI
08452]
gi|455668550|gb|EMF33758.1| HNH endonuclease domain protein [Leptospira interrogans serovar
Pomona str. Fox 32256]
gi|455792841|gb|EMF44581.1| HNH endonuclease domain protein [Leptospira interrogans serovar
Lora str. TE 1992]
gi|456821528|gb|EMF70034.1| HNH endonuclease domain protein [Leptospira interrogans serovar
Canicola str. LT1962]
gi|456967757|gb|EMG09081.1| HNH endonuclease domain protein [Leptospira interrogans serovar
Grippotyphosa str. LT2186]
gi|456989371|gb|EMG24167.1| HNH endonuclease domain protein [Leptospira interrogans serovar
Copenhageni str. LT2050]
Length = 184
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 94/189 (49%), Gaps = 33/189 (17%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT--INSPNGSFYIPAVLRVRHLLQV 158
LVL+ Y P+ + K A+ L +EKA +++ D++ I S F P ++ +R +V
Sbjct: 9 LVLNAGYVPIGIRSVKDALILIILEKAQLIKD-DKSLFIRSEKLRFTAPRIILLRDYYKV 67
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWK---------- 205
R K+ +SR+N+ RDN+ C YC + LT+DHV+P SR W+
Sbjct: 68 PPR---KDKVSRENIFQRDNYHCVYCGKKFPSSKLTLDHVIPRSR---WEHVPKKERPKE 121
Query: 206 ---WENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKG 262
WENLVAAC CN+RKG K L E L P+ + L PL S + ++
Sbjct: 122 FNSWENLVAACKNCNTRKGNKLLTELKWNL---PEENRVTPKLRFPLFS-----ITDQQA 173
Query: 263 TPVEWRQYL 271
WR+Y+
Sbjct: 174 EKFGWREYI 182
>gi|444915220|ref|ZP_21235356.1| HNH endonuclease family protein [Cystobacter fuscus DSM 2262]
gi|444713802|gb|ELW54694.1| HNH endonuclease family protein [Cystobacter fuscus DSM 2262]
Length = 199
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 90/183 (49%), Gaps = 26/183 (14%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVL-------EYYDQTINSPNGSF--------- 144
LVL+ +Y+PV+V KRA+ L ++ A + E+ D S +
Sbjct: 7 LVLNRNYQPVHVTSVKRAVLLLYLGVAKAIDSQYRLYEFEDWAALSATTAHDSISTVDRR 66
Query: 145 YIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRG 201
+ V + + R R++ SR N+ RD+ TCQYC+ R L +DHV+P S+G
Sbjct: 67 IRVPRVVVLSAYEYLPRGRVR--FSRLNIYARDHDTCQYCARQLPRSELNLDHVMPRSQG 124
Query: 202 GEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRK 261
G+ WEN+V +C CN RKG +T E+A ++L R P P+ P A R + R+
Sbjct: 125 GKTSWENVVCSCVPCNLRKGGRTPEQAGIKLLRTPVRPR-----WTPFFRGASRRVTYRE 179
Query: 262 GTP 264
P
Sbjct: 180 WLP 182
>gi|417777909|ref|ZP_12425721.1| HNH endonuclease domain protein [Leptospira weilii str. 2006001853]
gi|410781879|gb|EKR66446.1| HNH endonuclease domain protein [Leptospira weilii str. 2006001853]
Length = 184
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 90/185 (48%), Gaps = 25/185 (13%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVL-EYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ Y P+ + K A+ L +EKA ++ + + I S F P ++ +R +V
Sbjct: 9 LVLNAGYVPIGIRSVKDALILIILEKAQLIKDDKNFLIRSEKLKFTAPRIILLRDYYRVP 68
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEW----------KW 206
R K+ +SR+N+ RDN+ C YC + LT+DHV+P SR W
Sbjct: 69 PR---KDRVSRENIFQRDNYHCVYCRKKFPSTKLTLDHVIPRSRWEHIPKKERPKEFNSW 125
Query: 207 ENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVE 266
ENLVAAC CN+RKG K L E L P+ + L PL S + ++
Sbjct: 126 ENLVAACRHCNTRKGNKLLTELKWNL---PEENRVTPKLRFPLYSIS-----DQQAEKFG 177
Query: 267 WRQYL 271
WR+Y+
Sbjct: 178 WREYI 182
>gi|285017876|ref|YP_003375587.1| hypothetical protein XALc_1083 [Xanthomonas albilineans GPE PC73]
gi|283473094|emb|CBA15599.1| hypothetical protein XALC_1083 [Xanthomonas albilineans GPE PC73]
Length = 220
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 78/176 (44%), Gaps = 12/176 (6%)
Query: 75 SGKGISGESEEYDSDEEFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYD 134
+G + E+ + L R L LD R ++ + W+ A CL + A +
Sbjct: 13 TGAHAASEAVPTATSPRSTRLPSVRLLSLDAHGRVLDWINWQDAACL-YARGAVAWTLGE 71
Query: 135 QTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNN--------LSRKNLMYRDNFTCQYCS- 185
+ G V HL ++ R + L+ L RD C YC
Sbjct: 72 PCMEIHGGLSRASGERSVLHLHPIIAARGHARSRALDPTPTLTNTALFARDAQLCMYCGQ 131
Query: 186 --SRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
SR LT DHV+P S+GG WEN+V ACF CNSRKG +T ++A+M L VP P
Sbjct: 132 QFSRPQLTRDHVLPVSKGGRDIWENVVTACFHCNSRKGNRTPQQASMPLLAVPYRP 187
>gi|414581012|ref|ZP_11438152.1| HNH endonuclease family protein [Mycobacterium abscessus 5S-1215]
gi|420880370|ref|ZP_15343737.1| HNH endonuclease family protein [Mycobacterium abscessus 5S-0304]
gi|420883481|ref|ZP_15346842.1| HNH endonuclease family protein [Mycobacterium abscessus 5S-0421]
gi|420889728|ref|ZP_15353076.1| HNH endonuclease family protein [Mycobacterium abscessus 5S-0422]
gi|420897517|ref|ZP_15360856.1| HNH endonuclease family protein [Mycobacterium abscessus 5S-0708]
gi|420900450|ref|ZP_15363781.1| HNH endonuclease family protein [Mycobacterium abscessus 5S-0817]
gi|420907924|ref|ZP_15371242.1| HNH endonuclease family protein [Mycobacterium abscessus 5S-1212]
gi|420972177|ref|ZP_15435371.1| HNH endonuclease family protein [Mycobacterium abscessus 5S-0921]
gi|392085279|gb|EIU11104.1| HNH endonuclease family protein [Mycobacterium abscessus 5S-0304]
gi|392086804|gb|EIU12627.1| HNH endonuclease family protein [Mycobacterium abscessus 5S-0421]
gi|392087476|gb|EIU13298.1| HNH endonuclease family protein [Mycobacterium abscessus 5S-0422]
gi|392096829|gb|EIU22624.1| HNH endonuclease family protein [Mycobacterium abscessus 5S-0708]
gi|392097811|gb|EIU23605.1| HNH endonuclease family protein [Mycobacterium abscessus 5S-0817]
gi|392105828|gb|EIU31614.1| HNH endonuclease family protein [Mycobacterium abscessus 5S-1212]
gi|392116164|gb|EIU41932.1| HNH endonuclease family protein [Mycobacterium abscessus 5S-1215]
gi|392167289|gb|EIU92971.1| HNH endonuclease family protein [Mycobacterium abscessus 5S-0921]
Length = 155
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 75/144 (52%), Gaps = 9/144 (6%)
Query: 102 VLDISYRPVNVVCWKRAICLEFMEKADVLEYY--DQTINSPNGSFYIP-AVLRVRHLLQV 158
V + Y ++ V W+ A+ + + A LE + + + SPN +P ++L R+
Sbjct: 12 VFNADYSFLDTVRWQDAVGMLLRDVAYALEAHVPPRIVRSPNAEVEVPKSLLLTRY--AP 69
Query: 159 VKRRRIKNNLSRKNLMYRDNFTCQY--CSSRENLTIDHVVPASRGG-EWKWENLVAACFK 215
V RR SR ++ RDN+ CQY C ++ TIDHV P SRGG W N V AC
Sbjct: 70 VPYRRDPEFASRAEILRRDNYLCQYIGCGAKAT-TIDHVFPRSRGGAPSTWTNQVGACEP 128
Query: 216 CNSRKGKKTLEEANMQLSRVPKAP 239
CN RK +T EEA M+L R P P
Sbjct: 129 CNGRKADRTPEEAGMKLIREPFRP 152
>gi|54024465|ref|YP_118707.1| endonuclease [Nocardia farcinica IFM 10152]
gi|54015973|dbj|BAD57343.1| putative endonuclease [Nocardia farcinica IFM 10152]
Length = 177
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 78/149 (52%), Gaps = 7/149 (4%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQ--TINSPNGSFYIPAVLRVRHLL 156
R LVL+ SY + V RA+ L A+ + + I S +P +R+RH +
Sbjct: 18 RVLVLNASYEALTEVTADRAVVLLISGIAESIADREPYLPIRSQRLEIALPQTIRLRHYV 77
Query: 157 QVVKRRRIKNNLSRKNL---MYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAAC 213
++ + ++ SR L + RD C YC+ + T+DH+ P SRGG W+NLVA C
Sbjct: 78 -FLEHAAVVHDDSRATLAGVLRRDGNRCGYCADWAH-TVDHIRPRSRGGPNTWDNLVACC 135
Query: 214 FKCNSRKGKKTLEEANMQLSRVPKAPKDY 242
CN+RK +T EEA M+L PKAP +
Sbjct: 136 APCNTRKADRTPEEAGMRLLWQPKAPDHF 164
>gi|421096262|ref|ZP_15556969.1| HNH endonuclease domain protein [Leptospira borgpetersenii str.
200801926]
gi|410361163|gb|EKP12209.1| HNH endonuclease domain protein [Leptospira borgpetersenii str.
200801926]
gi|456889198|gb|EMG00107.1| HNH endonuclease domain protein [Leptospira borgpetersenii str.
200701203]
Length = 177
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 31/188 (16%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVL-EYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ Y P+ + K A+ L +EKA ++ + + I S F P ++ +R +V
Sbjct: 2 LVLNAGYVPIGIRSVKDALILIILEKAQLIKDDKNFLIRSEKLKFTTPRIILLRDYYRVP 61
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWK----------- 205
RR + +SR+N+ RDN+ C YC + LT+DHV+P SR W+
Sbjct: 62 PRR---DRVSRENIFQRDNYHCVYCRKKFPSAKLTLDHVIPRSR---WEHVPKKERPKEF 115
Query: 206 --WENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGT 263
WENLVAAC CN+RKG K L E L P+ + L PL S + + +
Sbjct: 116 NSWENLVAACRHCNTRKGNKLLAELKWNL---PEENRVTPKLRFPLYSISDQQV-----E 167
Query: 264 PVEWRQYL 271
WR+Y+
Sbjct: 168 KFGWREYI 175
>gi|384104601|ref|ZP_10005540.1| hypothetical protein W59_24660 [Rhodococcus imtechensis RKJ300]
gi|383837883|gb|EID77279.1| hypothetical protein W59_24660 [Rhodococcus imtechensis RKJ300]
Length = 183
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 75/147 (51%), Gaps = 4/147 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT--INSPNGSFYIPAVLRVRHLLQV 158
LVL+++Y + + +RA+ L + A+ + Y + I S + +P +R+ + V
Sbjct: 24 LVLNVTYEALCEIPAERAVVLISVGAAETVAYREPPFPIRSQHVEISLPQTIRLLRYVYV 83
Query: 159 VKRRRIKNN--LSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+ ++ + + RD C YC+ TIDHV+P SRGG W NLVA C C
Sbjct: 84 PHSVLVTDSSRATFAGVFRRDRNRCGYCAEPVATTIDHVLPRSRGGPNTWANLVACCVPC 143
Query: 217 NSRKGKKTLEEANMQLSRVPKAPKDYD 243
N RK +T EEA M L PKAP+ +
Sbjct: 144 NQRKADRTPEEAGMPLLWEPKAPRHIE 170
>gi|297172086|gb|ADI23068.1| restriction endonuclease [uncultured gamma proteobacterium
HF0770_07M15]
Length = 235
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 76/162 (46%), Gaps = 22/162 (13%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVL--------------EYYDQTINSPNGSFYI 146
LVL+ ++ VNV +RA+ L F A V+ E+ D + P+
Sbjct: 39 LVLNRLWQAVNVCSVRRAVGLLFTGHAQVVYNDDADGFQTFSFGEWQDFSEAEPHPDSIA 98
Query: 147 PAVLRVR-----HLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPA 198
R+R LL + R + +R N+ RD CQYC R +L +DHV+P
Sbjct: 99 AVSFRLRIPRVILLLGYDRFPRQEVKFTRHNIFERDKNICQYCGGRFDRRDLNLDHVIPR 158
Query: 199 SRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPK 240
RGG WEN+V +C CN+RK +T EA + L P+ PK
Sbjct: 159 DRGGPTNWENIVCSCIPCNTRKSNRTPREAGLHLISKPRKPK 200
>gi|453076395|ref|ZP_21979171.1| hypothetical protein G419_13911 [Rhodococcus triatomae BKS 15-14]
gi|452761261|gb|EME19571.1| hypothetical protein G419_13911 [Rhodococcus triatomae BKS 15-14]
Length = 178
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 12/153 (7%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKAD-VLEYYDQT-INSPNGSFYIPAVLR----- 151
R LVL+ +++ + +RA+ L + A+ V+++ + I S + +P +R
Sbjct: 17 RVLVLNATFQVLCEAPAERAVALVAIGAAESVVDHEPRVPIRSQHAEIALPVTIRLFEYV 76
Query: 152 -VRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLV 210
V H + V R + + RD +C YC+ R TIDHVVP SRGG W NLV
Sbjct: 77 YVPHAVTVTDSAR----ATYAGVFRRDRHSCAYCADRAATTIDHVVPRSRGGANSWANLV 132
Query: 211 AACFKCNSRKGKKTLEEANMQLSRVPKAPKDYD 243
A C CN RK +T EEA M L PK P +
Sbjct: 133 ACCGPCNQRKADRTPEEAGMALLWEPKVPNHIE 165
>gi|418721501|ref|ZP_13280678.1| HNH endonuclease domain protein [Leptospira borgpetersenii str. UI
09149]
gi|418736888|ref|ZP_13293287.1| HNH endonuclease domain protein [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|410742193|gb|EKQ90943.1| HNH endonuclease domain protein [Leptospira borgpetersenii str. UI
09149]
gi|410747774|gb|EKR00679.1| HNH endonuclease domain protein [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
Length = 177
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 31/188 (16%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVL-EYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ Y P+ + K A+ L +EKA ++ + + I S F P ++ +R +V
Sbjct: 2 LVLNAGYVPIGIRSVKDALILIILEKAQLIKDDKNFLIRSEKLKFTAPRIILLRDYYRVP 61
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWK----------- 205
RR + +SR+N+ RDN+ C YC + LT+DHV+P SR W+
Sbjct: 62 PRR---DRVSRENIFQRDNYHCVYCRKKFPSAKLTLDHVIPRSR---WEHVPKKERPKEF 115
Query: 206 --WENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGT 263
WENLVAAC CN+RKG K L E L P+ + L PL S + + +
Sbjct: 116 NSWENLVAACRHCNTRKGNKLLAELKWNL---PEENRVTPKLRFPLYSISDQQV-----E 167
Query: 264 PVEWRQYL 271
WR+Y+
Sbjct: 168 KFGWREYI 175
>gi|116328236|ref|YP_797956.1| restriction endonuclease [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116330960|ref|YP_800678.1| restriction endonuclease [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
gi|116120980|gb|ABJ79023.1| Restriction endonuclease, HNH family [Leptospira borgpetersenii
serovar Hardjo-bovis str. L550]
gi|116124649|gb|ABJ75920.1| Restriction endonuclease, HNH family [Leptospira borgpetersenii
serovar Hardjo-bovis str. JB197]
Length = 184
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 31/188 (16%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVL-EYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ Y P+ + K A+ L +EKA ++ + + I S F P ++ +R +V
Sbjct: 9 LVLNAGYVPIGIRSVKDALILIILEKAQLIKDDKNFLIRSEKLKFTAPRIILLRDYYRVP 68
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWK----------- 205
RR + +SR+N+ RDN+ C YC + LT+DHV+P SR W+
Sbjct: 69 PRR---DRVSRENIFQRDNYHCVYCRKKFPSAKLTLDHVIPRSR---WEHVPKKERPKEF 122
Query: 206 --WENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGT 263
WENLVAAC CN+RKG K L E L P+ + L PL S + + +
Sbjct: 123 NSWENLVAACRHCNTRKGNKLLAELKWNL---PEENRVTPKLRFPLYSISDQQV-----E 174
Query: 264 PVEWRQYL 271
WR+Y+
Sbjct: 175 KFGWREYI 182
>gi|397573452|gb|EJK48710.1| hypothetical protein THAOC_32472 [Thalassiosira oceanica]
Length = 389
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 15/159 (9%)
Query: 100 GLVLDISYRPVNVVC-----WKRAICLEFMEKADVLEYYDQT-INSPNGSFYIPAVLRVR 153
LVL+ Y+P+ ++ W+ + KA V++ Y + S +P+V+ +R
Sbjct: 203 ALVLNADYQPLRMLPLSKLRWQETVKAVLSGKAVVVDVYPNVYVRSVGLDMPVPSVIALR 262
Query: 154 HLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSS---RENLTIDHVVPASRGGEWKWENLV 210
K R +R+N+ RD + CQYC +L++DHV P GG+ WEN V
Sbjct: 263 EYAPTGKARPA---FTRRNVFLRDGYRCQYCGQLFRTSDLSLDHVQPRCLGGKLNWENAV 319
Query: 211 AACFKCNSRKGK---KTLEEANMQLSRVPKAPKDYDILA 246
C KCN RKG L M+L P+ P +++L+
Sbjct: 320 TCCKKCNGRKGSLRPNQLHTVGMKLLSTPRCPSQFELLS 358
>gi|389793446|ref|ZP_10196613.1| restriction endonuclease [Rhodanobacter fulvus Jip2]
gi|388434192|gb|EIL91141.1| restriction endonuclease [Rhodanobacter fulvus Jip2]
Length = 204
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 93/192 (48%), Gaps = 20/192 (10%)
Query: 94 ELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVR 153
+L R L LD+S R ++ + W+ A+CL ++ +A D + G + V +
Sbjct: 10 DLQATRVLSLDVSGRILDWISWQDAVCL-YVREAVAWTLGDPCLTVHGGINRLHGVQSLL 68
Query: 154 HLLQVVKRR-RIKNN-------LSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGG 202
HL +V +++ L+ L RD C YC +R LT DHV+P SR G
Sbjct: 69 HLHPIVASTGHCRDHAVDPAPALTNTALFARDRHLCLYCGDHFTRAELTRDHVLPLSRQG 128
Query: 203 EWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAP--------KDYDILAIPLTSAAI 254
+ +WEN+V+AC CN +K +T ++ANM L VP P + +ILA +
Sbjct: 129 KDEWENVVSACVACNLKKSNRTPQQANMPLLAVPYRPSWVEHLILSNRNILADQMEFLVS 188
Query: 255 RMLRVRKGTPVE 266
+ R R+G+ E
Sbjct: 189 HLPRSRRGSMAE 200
>gi|424793575|ref|ZP_18219667.1| HNH endonuclease family protein [Xanthomonas translucens pv.
graminis ART-Xtg29]
gi|422796549|gb|EKU25040.1| HNH endonuclease family protein [Xanthomonas translucens pv.
graminis ART-Xtg29]
Length = 215
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 94 ELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVR 153
L R L LD R ++ + W+ A CL + A + ++ G V
Sbjct: 27 HLPSVRLLSLDAHGRVLDWINWQSAACL-YARGAVAWTLGEPCMHIHGGMSRASGERSVL 85
Query: 154 HLLQVVKRRRIKNN--------LSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGG 202
HL ++ R + L+ L RD C YC SR +LT DHV+P S+GG
Sbjct: 86 HLHPIMAARGHARSRALDPTPTLTNTALFARDAQLCLYCGQQFSRPHLTRDHVMPVSKGG 145
Query: 203 EWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
WEN+V ACF CNSRKG +T ++A+M L VP P
Sbjct: 146 RDTWENVVTACFHCNSRKGNRTPQQASMPLLAVPYRP 182
>gi|440730377|ref|ZP_20910467.1| hypothetical protein A989_03612 [Xanthomonas translucens DAR61454]
gi|440379031|gb|ELQ15637.1| hypothetical protein A989_03612 [Xanthomonas translucens DAR61454]
Length = 185
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 73/153 (47%), Gaps = 12/153 (7%)
Query: 98 FRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQ 157
R L LD R ++ + W+ A CL + A + ++ G V HL
Sbjct: 1 MRLLSLDAHGRVLDWINWQSAACL-YARGAVAWTLGEPCMHIHGGMSRASGERSVLHLHP 59
Query: 158 VVKRRRIKNN--------LSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKW 206
++ R + L+ L RD C YC SR +LT DHV+P S+GG W
Sbjct: 60 IIAARGHARSRALDPTPTLTNTALFARDAQLCLYCGQQFSRPHLTRDHVMPVSKGGRDTW 119
Query: 207 ENLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
EN+V ACF CNSRKG +T ++A+M L VP P
Sbjct: 120 ENVVTACFHCNSRKGNRTPQQASMPLLAVPYRP 152
>gi|325919179|ref|ZP_08181234.1| restriction endonuclease [Xanthomonas gardneri ATCC 19865]
gi|325550349|gb|EGD21148.1| restriction endonuclease [Xanthomonas gardneri ATCC 19865]
Length = 218
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 75/163 (46%), Gaps = 12/163 (7%)
Query: 88 SDEEFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIP 147
S F +L R L LD R ++ + W+ A CL + A + + G +
Sbjct: 24 SVAAFRQLPALRLLSLDAHGRVLDWINWQDAACL-YARGAVSWTLGEPCMQIHGGISRLT 82
Query: 148 AVLRVRHLLQVVKRRRIKNN--------LSRKNLMYRDNFTCQYCS---SRENLTIDHVV 196
V L ++ R + LS L RD C YC SR LT DHV+
Sbjct: 83 GERSVLELHPIIAARGHARSRALDPTPTLSNTALFARDAQLCLYCGQHFSRPQLTRDHVL 142
Query: 197 PASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
P S+GG WEN+V ACF+CNSRK +T ++A+M L VP P
Sbjct: 143 PVSKGGRDTWENVVTACFQCNSRKANRTPQQAHMPLLAVPYRP 185
>gi|219123713|ref|XP_002182164.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406125|gb|EEC46065.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 145
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 10/139 (7%)
Query: 105 ISYRPVNVVCWKRAICLEFMEKADVLEYY-DQTINSPNGSFYIPAVLRVRHLLQVVKRRR 163
++Y P+++ W+ A+ F K V++ Y D TI + + +P+V+ + + + R
Sbjct: 10 LTYLPLSLWSWQDAVKAIFSGKVTVVDVYPDVTIRAASLELPLPSVIALNEYVPTYQSR- 68
Query: 164 IKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
+++N+ RD + CQYC+ + +L++DHVVP RGG W+N V +C CN RK
Sbjct: 69 --PAFTKRNVFLRDEYRCQYCADQFHTRDLSLDHVVPRCRGGRLTWDNAVTSCRHCNGRK 126
Query: 221 GK---KTLEEANMQLSRVP 236
G L M+L R P
Sbjct: 127 GSLDVTQLGRVGMRLQRSP 145
>gi|386719291|ref|YP_006185617.1| HNH endonuclease family protein [Stenotrophomonas maltophilia D457]
gi|384078853|emb|CCH13446.1| HNH endonuclease family protein [Stenotrophomonas maltophilia D457]
Length = 214
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 72/152 (47%), Gaps = 12/152 (7%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQV 158
R L LD R ++ + W+ A CL + +A D ++ G+ + L +
Sbjct: 31 RLLSLDAHGRVLDWITWQDAACL-YAREAVAWTLGDPCLHIHGGTNRFSGLQSGMDLHPI 89
Query: 159 VKRR--------RIKNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWE 207
+ R NL+ + L RD C YC SR LT DHV+P S+GG WE
Sbjct: 90 IAARGHARSRAIDPTPNLTNQALFARDAHLCMYCGQQFSRPTLTRDHVMPLSKGGLDCWE 149
Query: 208 NLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
N+V ACF CNSRK +T ++A M L VP P
Sbjct: 150 NVVTACFHCNSRKSDRTPQQAGMPLLAVPYRP 181
>gi|119504871|ref|ZP_01626948.1| hypothetical protein MGP2080_04635 [marine gamma proteobacterium
HTCC2080]
gi|119459157|gb|EAW40255.1| hypothetical protein MGP2080_04635 [marine gamma proteobacterium
HTCC2080]
Length = 183
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Query: 168 LSRKNLMYRDNFTCQYC---SSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
L + L RD+ C YC +SR LT DHV+PASRGG KWEN+VAAC +CN +K KT
Sbjct: 76 LCNRTLFKRDDHRCLYCGNQASRHQLTRDHVLPASRGGTNKWENVVAACKRCNWQKDNKT 135
Query: 225 LEEANMQLSRVPKAPKDYD 243
EEA M L VP P ++
Sbjct: 136 PEEAGMPLLAVPFRPNPFE 154
>gi|78048319|ref|YP_364494.1| HNH endonuclease [Xanthomonas campestris pv. vesicatoria str.
85-10]
gi|346725434|ref|YP_004852103.1| Restriction endonuclease [Xanthomonas axonopodis pv. citrumelo F1]
gi|78036749|emb|CAJ24442.1| HNH endonuclease family protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|346650181|gb|AEO42805.1| Restriction endonuclease [Xanthomonas axonopodis pv. citrumelo F1]
Length = 218
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 80/178 (44%), Gaps = 12/178 (6%)
Query: 73 NVSGKGISGESEEYDSDEEFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEY 132
+V G S + + +L R L LD R ++ + W+ A CL + A
Sbjct: 9 DVIVPGGSAAPDTGSAVAAIHQLPTLRLLSLDAHGRVLDWINWQDAACL-YARDAVSWTL 67
Query: 133 YDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNN--------LSRKNLMYRDNFTCQYC 184
+ + G + L ++ R + LS L RD+ C YC
Sbjct: 68 GEPCMQIHGGISRLTGERSTLELHPIIAARGHARSRALDPTPTLSNTALFARDSQLCMYC 127
Query: 185 S---SRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
SR +LT DHV+P S+GG WEN+V ACF+CNSRK +T ++A+M L VP P
Sbjct: 128 GQHFSRPHLTRDHVMPVSKGGRDSWENVVTACFQCNSRKANRTPQQAHMPLLAVPYRP 185
>gi|407644763|ref|YP_006808522.1| putative HNH endonuclease [Nocardia brasiliensis ATCC 700358]
gi|407307647|gb|AFU01548.1| putative HNH endonuclease [Nocardia brasiliensis ATCC 700358]
Length = 181
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 76/145 (52%), Gaps = 9/145 (6%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKA----DVLEYYDQTINSPNGSFYIPAVLRVRHLL 156
LVL+ SY ++ + RA+ L A D + ++ TI S + +P +R+ +
Sbjct: 23 LVLNASYEALDEISADRAVVLLMAGTAESIADRVPHF--TIRSQHVEVLLPETIRLLRYV 80
Query: 157 QVVKRRRIKNN--LSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACF 214
+ R+ + + ++ RDN C YC++ T+DH+ P SRGG W NLVA C
Sbjct: 81 YLEHSTRVHDESRATWAGVLRRDNHRCGYCAAWAR-TVDHIRPRSRGGPNTWSNLVACCG 139
Query: 215 KCNSRKGKKTLEEANMQLSRVPKAP 239
CN+ K +T EEA M+L VPKAP
Sbjct: 140 PCNTSKADRTPEEAGMRLLWVPKAP 164
>gi|428177584|gb|EKX46463.1| hypothetical protein GUITHDRAFT_152362 [Guillardia theta CCMP2712]
Length = 128
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 67/116 (57%), Gaps = 9/116 (7%)
Query: 146 IPAVLRVRHLLQVVKRRRIKNNLS-----RKNLMYRDNFTCQYCSSRENLTIDHVVPASR 200
+P+V+ ++ +++ + K LS R ++ RDN TCQYC S T+DH+VP S+
Sbjct: 3 VPSVIMLQQFVKLDFKPNSKRKLSLLRPSRGSIFARDNNTCQYCGSPAT-TLDHIVPKSK 61
Query: 201 GGEWKWENLVAACFKCNSRKGKKTLEEA---NMQLSRVPKAPKDYDILAIPLTSAA 253
GG+ WENLVAAC CN +KG + L + +L PK P ++I+ + L + A
Sbjct: 62 GGQHSWENLVAACSSCNKKKGSRLLSDMRDDKFKLMDKPKHPGPWNIMRLRLLAQA 117
>gi|325925093|ref|ZP_08186513.1| restriction endonuclease [Xanthomonas perforans 91-118]
gi|325544509|gb|EGD15872.1| restriction endonuclease [Xanthomonas perforans 91-118]
Length = 218
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 80/178 (44%), Gaps = 12/178 (6%)
Query: 73 NVSGKGISGESEEYDSDEEFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEY 132
+V G S + + +L R L LD R ++ + W+ A CL + A
Sbjct: 9 DVIVPGGSAAPDAGSAVAAIHQLPTLRLLSLDAHGRVLDWINWQDAACL-YARDAVSWTL 67
Query: 133 YDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNN--------LSRKNLMYRDNFTCQYC 184
+ + G + L ++ R + LS L RD+ C YC
Sbjct: 68 GEPCMQIHGGISRLTGERSTLELHPIIAARGHARSRALDPTPTLSNTALFARDSQLCMYC 127
Query: 185 S---SRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
SR +LT DHV+P S+GG WEN+V ACF+CNSRK +T ++A+M L VP P
Sbjct: 128 GQHFSRPHLTRDHVMPVSKGGRDSWENVVTACFQCNSRKANRTPQQAHMPLLAVPYRP 185
>gi|410664498|ref|YP_006916869.1| HNH endonuclease domain-containing protein [Simiduia agarivorans
SA1 = DSM 21679]
gi|409026855|gb|AFU99139.1| HNH endonuclease domain-containing protein [Simiduia agarivorans
SA1 = DSM 21679]
Length = 186
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 82/163 (50%), Gaps = 19/163 (11%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKAD---------VLEYYDQTINSPNGSFYIPAV 149
R L L+++ +P+ + W+ A+CL + V Y Q ++ +PA+
Sbjct: 4 RILRLNLAGQPIEWIHWQEAVCLYARDLVTWTLGGVVRRVTGGYSQ-LSGHISRIELPAI 62
Query: 150 LRV--RHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEW 204
+ V HL + R L+ + L RD++ C YC R L+ DHV P SRGG+
Sbjct: 63 MAVGGSHLAPM----RTVPPLTNRALFQRDDYRCLYCGKRFSFMQLSRDHVHPTSRGGKD 118
Query: 205 KWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAI 247
+W+N+VAAC +CN KG L E +M L +P P + + LA+
Sbjct: 119 RWQNVVAACKRCNQHKGNHLLSEIDMPLIALPYKPNNAEYLAL 161
>gi|190575229|ref|YP_001973074.1| hnh endonuclease (fragment), partial [Stenotrophomonas maltophilia
K279a]
gi|424669539|ref|ZP_18106564.1| hypothetical protein A1OC_03149 [Stenotrophomonas maltophilia
Ab55555]
gi|190013151|emb|CAQ46783.1| hnh endonuclease (fragment) [Stenotrophomonas maltophilia K279a]
gi|401071610|gb|EJP80121.1| hypothetical protein A1OC_03149 [Stenotrophomonas maltophilia
Ab55555]
Length = 221
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQV 158
R L LD R ++ + W+ A CL + +A D ++ G+ + L +
Sbjct: 38 RLLSLDAHGRVLDWITWQDAACL-YAREAVAWTLGDPCLHIHGGTNRFSGLQSGMDLHPI 96
Query: 159 VKRR--------RIKNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWE 207
+ R NL+ L RD C YC +R LT DHVVP S+GG WE
Sbjct: 97 IAARGHARSRAIDPTPNLTNPALFARDAHLCMYCGQQFNRPTLTRDHVVPLSKGGLDCWE 156
Query: 208 NLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
N+V ACF CNSRK +T ++A M L VP P
Sbjct: 157 NVVTACFHCNSRKSDRTPQQAGMPLLAVPYRP 188
>gi|421109849|ref|ZP_15570356.1| HNH endonuclease domain protein [Leptospira kirschneri str. H2]
gi|410004876|gb|EKO58680.1| HNH endonuclease domain protein [Leptospira kirschneri str. H2]
Length = 175
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 91/187 (48%), Gaps = 31/187 (16%)
Query: 102 VLDISYRPVNVVCWKRAICLEFMEKADVL-EYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
+L+ Y P+ + K A+ L +EKA ++ + + I S F P ++ +R +V
Sbjct: 1 MLNAGYVPIGIRSVKDALILIILEKAQLIKDDKNLFIRSEKLRFTAPRIILLRDYYKVPP 60
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWK------------ 205
R K+ +SR+N+ RDN+ C YC + LT+DHV+P SR W+
Sbjct: 61 R---KDKVSRENIFQRDNYHCVYCGKKFPSSKLTLDHVIPRSR---WEHVPKKERPKEFN 114
Query: 206 -WENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTP 264
WENLVAAC CN+RKG K L E L P+ + L PL S + ++
Sbjct: 115 SWENLVAACKNCNTRKGNKLLAELKWNL---PEENRVTPKLRFPLFS-----ITDQQAEK 166
Query: 265 VEWRQYL 271
WR+Y+
Sbjct: 167 FGWREYI 173
>gi|456736791|gb|EMF61517.1| HNH endonuclease family protein [Stenotrophomonas maltophilia EPM1]
Length = 214
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQV 158
R L LD R ++ + W+ A CL + +A D ++ G+ + L +
Sbjct: 31 RLLSLDAHGRVLDWITWQDAACL-YAREAVAWTLGDPCLHIHGGTNRFSGLQSGMDLHPI 89
Query: 159 VKRR--------RIKNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWE 207
+ R NL+ L RD C YC +R LT DHVVP S+GG WE
Sbjct: 90 IAARGHARSRAIDPTPNLTNPALFARDAHLCMYCGQQFNRPTLTRDHVVPLSKGGLDCWE 149
Query: 208 NLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
N+V ACF CNSRK +T ++A M L VP P
Sbjct: 150 NVVTACFHCNSRKSDRTPQQAGMPLLAVPYRP 181
>gi|384418848|ref|YP_005628208.1| HNH endonuclease family protein [Xanthomonas oryzae pv. oryzicola
BLS256]
gi|353461761|gb|AEQ96040.1| HNH endonuclease family protein [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 220
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 73/159 (45%), Gaps = 12/159 (7%)
Query: 92 FDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLR 151
+L R L LD R ++ + W+ A CL + A + I G +
Sbjct: 19 IHQLPTLRLLSLDAHGRVLDWINWQDAACL-YARDAVSWTLGEPCIQIHGGISRLTGERS 77
Query: 152 VRHLLQVVKRRRIKNN--------LSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASR 200
L ++ R + LS L RD C YC SR +LT DHV+P S+
Sbjct: 78 TLELHPIIAARGHARSRALDPTPTLSNTALFARDAQLCMYCGQHFSRPHLTRDHVMPVSK 137
Query: 201 GGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
GG WEN+V ACF+CNSRK +T ++A+M L VP P
Sbjct: 138 GGRDSWENVVTACFQCNSRKANRTPQQAHMPLLAVPYRP 176
>gi|374621321|ref|ZP_09693855.1| restriction endonuclease [gamma proteobacterium HIMB55]
gi|374304548|gb|EHQ58732.1| restriction endonuclease [gamma proteobacterium HIMB55]
Length = 183
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 52/79 (65%), Gaps = 3/79 (3%)
Query: 168 LSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
LS + L RD+ C YC +R+ LT DHVVPASRGG+ +WEN+VAAC +CN K +T
Sbjct: 76 LSNRTLFRRDDHRCLYCGNQFARQELTRDHVVPASRGGKNEWENVVAACKRCNWLKDCRT 135
Query: 225 LEEANMQLSRVPKAPKDYD 243
EEA+M L VP P Y+
Sbjct: 136 PEEASMPLLAVPFRPNAYE 154
>gi|410450307|ref|ZP_11304348.1| HNH endonuclease domain protein [Leptospira sp. Fiocruz LV3954]
gi|418746661|ref|ZP_13302981.1| HNH endonuclease domain protein [Leptospira santarosai str. CBC379]
gi|421113436|ref|ZP_15573880.1| HNH endonuclease domain protein [Leptospira santarosai str. JET]
gi|410015820|gb|EKO77911.1| HNH endonuclease domain protein [Leptospira sp. Fiocruz LV3954]
gi|410792370|gb|EKR90305.1| HNH endonuclease domain protein [Leptospira santarosai str. CBC379]
gi|410801210|gb|EKS07384.1| HNH endonuclease domain protein [Leptospira santarosai str. JET]
gi|456876972|gb|EMF92027.1| HNH endonuclease domain protein [Leptospira santarosai str. ST188]
Length = 175
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 91/187 (48%), Gaps = 31/187 (16%)
Query: 102 VLDISYRPVNVVCWKRAICLEFMEKADVL-EYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
+L+ Y P+ + K A+ L +EKA ++ + + I S F P ++ +R +V
Sbjct: 1 MLNAGYVPIGIRSVKDALILIILEKAQLIKDDKNLLIRSEKLKFTAPRIILLRDYYRVPP 60
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWK------------ 205
R K+ +SR+N+ RDN+ C YC + LT+DH++P SR W+
Sbjct: 61 R---KDRVSRENIFQRDNYHCVYCRKKFPGSKLTLDHIIPRSR---WEHVPKKERPKEFN 114
Query: 206 -WENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTP 264
WENLVAAC CN+RKG K L E L P+ + L PL S + ++
Sbjct: 115 SWENLVAACRHCNTRKGNKLLAELKWNL---PEENRVTPKLRFPLFSIS-----DQQAEK 166
Query: 265 VEWRQYL 271
WR+Y+
Sbjct: 167 FGWREYI 173
>gi|456863018|gb|EMF81530.1| HNH endonuclease domain protein [Leptospira weilii serovar Topaz
str. LT2116]
Length = 175
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 91/187 (48%), Gaps = 31/187 (16%)
Query: 102 VLDISYRPVNVVCWKRAICLEFMEKADVL-EYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
+L+ Y P+ + K A+ L +EKA ++ + + I S F P ++ +R +V
Sbjct: 1 MLNAGYVPIGIRSVKDALILIILEKAQLIKDDKNFLIRSEKLKFTAPRIILLRDYYRVPP 60
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWK------------ 205
R K+ +SR+N+ RDN+ C YC + LT+DHV+P SR W+
Sbjct: 61 R---KDRVSRENIFQRDNYHCVYCRKKFPSTKLTLDHVIPRSR---WEHVPKKERPKEFN 114
Query: 206 -WENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTP 264
WENLVAAC CN+RKG K L E L P+ + L PL S + ++
Sbjct: 115 SWENLVAACRHCNTRKGNKLLTELKWNL---PEENRVTPKLRFPLYSIS-----DQQAEK 166
Query: 265 VEWRQYL 271
WR+Y+
Sbjct: 167 FGWREYI 173
>gi|344208198|ref|YP_004793339.1| HNH endonuclease [Stenotrophomonas maltophilia JV3]
gi|343779560|gb|AEM52113.1| HNH endonuclease [Stenotrophomonas maltophilia JV3]
Length = 221
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 72/152 (47%), Gaps = 12/152 (7%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQV 158
R L LD R ++ + W+ A CL + +A D ++ G+ + L +
Sbjct: 38 RLLSLDAHGRVLDWITWQDAACL-YAREAVAWTLGDPCLHIHGGTNRFSGLQSGMDLHPI 96
Query: 159 VKRR--------RIKNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWE 207
+ R NL+ + L RD C YC +R LT DHV+P S+GG WE
Sbjct: 97 IAARGHARSRAIDPTPNLTNQALFARDAHLCMYCGQQFNRPTLTRDHVMPLSKGGLDCWE 156
Query: 208 NLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
N+V ACF CNSRK +T ++A M L VP P
Sbjct: 157 NVVTACFHCNSRKSDRTPQQAGMPLLAVPYRP 188
>gi|418517123|ref|ZP_13083290.1| hypothetical protein MOU_09978 [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
gi|418520500|ref|ZP_13086549.1| hypothetical protein WS7_05648 [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|410703881|gb|EKQ62369.1| hypothetical protein WS7_05648 [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|410706180|gb|EKQ64643.1| hypothetical protein MOU_09978 [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
Length = 218
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 12/159 (7%)
Query: 92 FDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLR 151
+L R L LD R ++ + W+ A CL + A + + G +
Sbjct: 28 IHQLPTLRLLSLDAHGRVLDWINWQDAACL-YARDAVSWTLGEPCMQIHGGISRLTGERS 86
Query: 152 VRHLLQVVKRRRIKNN--------LSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASR 200
L ++ R + LS L RD+ C YC SR +LT DHV+P S+
Sbjct: 87 TLELHPIIAARGHARSRALDPTPTLSNTALFARDSQMCMYCGQHFSRPHLTRDHVMPVSK 146
Query: 201 GGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
GG WEN+V ACF+CNSRK +T ++A+M L VP P
Sbjct: 147 GGRDSWENVVTACFQCNSRKANRTPQQAHMPLLAVPYRP 185
>gi|421099640|ref|ZP_15560288.1| HNH endonuclease domain protein [Leptospira borgpetersenii str.
200901122]
gi|410797287|gb|EKR99398.1| HNH endonuclease domain protein [Leptospira borgpetersenii str.
200901122]
Length = 175
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 91/187 (48%), Gaps = 31/187 (16%)
Query: 102 VLDISYRPVNVVCWKRAICLEFMEKADVL-EYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
+L+ Y P+ + K A+ L +EKA ++ + + I S F P ++ +R +V
Sbjct: 1 MLNAGYVPIGIRSVKDALILIILEKAQLIKDDKNFLIRSEKLKFTAPRIILLRDYYRVPP 60
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWK------------ 205
R K+ +SR+N+ RDN+ C YC + LT+DHV+P SR W+
Sbjct: 61 R---KDRVSRENIFQRDNYHCVYCRKKFPSTKLTLDHVIPRSR---WEHVPKKERPKEFN 114
Query: 206 -WENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTP 264
WENLVAAC CN+RKG K L E L P+ + L PL S + ++
Sbjct: 115 SWENLVAACRHCNTRKGNKLLAELKWNL---PEENRVTPKLRFPLYSIS-----DQQAEK 166
Query: 265 VEWRQYL 271
WR+Y+
Sbjct: 167 FGWREYI 173
>gi|294626170|ref|ZP_06704776.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294667555|ref|ZP_06732770.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292599522|gb|EFF43653.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292602675|gb|EFF46111.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 218
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 12/159 (7%)
Query: 92 FDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLR 151
+L R L LD R ++ + W+ A CL + A + + G +
Sbjct: 28 IHQLPTLRLLSLDAHGRVLDWINWQDAACL-YARDAVSWTLGEPCMQIHGGISRLTGERS 86
Query: 152 VRHLLQVVKRRRIKNN--------LSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASR 200
L ++ R + LS L RD+ C YC SR +LT DHV+P S+
Sbjct: 87 TLELHPIIAARGHARSRALDPTPTLSNTALFARDSQLCMYCGQHFSRPHLTRDHVMPVSK 146
Query: 201 GGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
GG WEN+V ACF+CNSRK +T ++A+M L VP P
Sbjct: 147 GGRDSWENVVTACFQCNSRKANRTPQQAHMPLLAVPYRP 185
>gi|77748663|ref|NP_642878.2| hypothetical protein XAC2564 [Xanthomonas axonopodis pv. citri str.
306]
gi|381170909|ref|ZP_09880061.1| HNH endonuclease family protein [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
gi|380688632|emb|CCG36548.1| HNH endonuclease family protein [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
Length = 218
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 12/159 (7%)
Query: 92 FDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLR 151
+L R L LD R ++ + W+ A CL + A + + G +
Sbjct: 28 IHQLPTLRLLSLDAHGRVLDWINWQDAACL-YARDAVSWTLGEPCMQIHGGISRLTGERS 86
Query: 152 VRHLLQVVKRRRIKNN--------LSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASR 200
L ++ R + LS L RD+ C YC SR +LT DHV+P S+
Sbjct: 87 TLELHPIIAARGHARSRALDPTPTLSNTALFARDSQLCMYCGQHFSRPHLTRDHVMPVSK 146
Query: 201 GGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
GG WEN+V ACF+CNSRK +T ++A+M L VP P
Sbjct: 147 GGRDSWENVVTACFQCNSRKANRTPQQAHMPLLAVPYRP 185
>gi|21108835|gb|AAM37414.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
str. 306]
Length = 209
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 12/159 (7%)
Query: 92 FDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLR 151
+L R L LD R ++ + W+ A CL + A + + G +
Sbjct: 19 IHQLPTLRLLSLDAHGRVLDWINWQDAACL-YARDAVSWTLGEPCMQIHGGISRLTGERS 77
Query: 152 VRHLLQVVKRRRIKNN--------LSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASR 200
L ++ R + LS L RD+ C YC SR +LT DHV+P S+
Sbjct: 78 TLELHPIIAARGHARSRALDPTPTLSNTALFARDSQLCMYCGQHFSRPHLTRDHVMPVSK 137
Query: 201 GGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
GG WEN+V ACF+CNSRK +T ++A+M L VP P
Sbjct: 138 GGRDSWENVVTACFQCNSRKANRTPQQAHMPLLAVPYRP 176
>gi|319786788|ref|YP_004146263.1| HNH endonuclease [Pseudoxanthomonas suwonensis 11-1]
gi|317465300|gb|ADV27032.1| HNH endonuclease [Pseudoxanthomonas suwonensis 11-1]
Length = 214
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 168 LSRKNLMYRDNFTCQYCSS---RENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
LS L RD++ C YC R LT DHV+P SRGG WEN+V+ACF CNSRK +T
Sbjct: 109 LSNPALFARDSYLCLYCGQQFPRPQLTRDHVIPLSRGGLDIWENVVSACFHCNSRKSNRT 168
Query: 225 LEEANMQLSRVPKAPK 240
+ANM L VP P
Sbjct: 169 PHQANMPLLAVPYRPS 184
>gi|398347154|ref|ZP_10531857.1| restriction endonuclease [Leptospira broomii str. 5399]
Length = 183
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 17/146 (11%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVL-EYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ +Y PV + + AI L + KA+++ + + I S P ++ + +V
Sbjct: 9 LVLNATYVPVAIRTVRDAIVLLLLNKAELIKDEKNLLIRSEKLKLTAPRIILLTDYYKVP 68
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGE----------WKW 206
++R + LSR+N+ RDN+ C YC + LT+DHV+P SR E W
Sbjct: 69 RKR---HKLSRENIFLRDNYECVYCRRKLPTSRLTLDHVIPKSRWEEIAKERKPAEYHTW 125
Query: 207 ENLVAACFKCNSRKGKKTLEEANMQL 232
ENLV AC CN++KG K L E +L
Sbjct: 126 ENLVTACRDCNTKKGNKLLHELKWEL 151
>gi|117928810|ref|YP_873361.1| HNH endonuclease [Acidothermus cellulolyticus 11B]
gi|117649273|gb|ABK53375.1| HNH endonuclease [Acidothermus cellulolyticus 11B]
Length = 186
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 82/139 (58%), Gaps = 3/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ +Y P+ VV +RA+ L KA LE +Q +S + + +PAV+R+ ++V
Sbjct: 8 LVLNATYEPIGVVSGRRALLLVLAAKAVALEPGEQVWHSASVAVPVPAVVRLTRFVKVPY 67
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R + L+R+ + RD C YC + ++DHVVP SRGG WEN+V+ C +CN K
Sbjct: 68 RATVP--LTRRGVFLRDGGRCVYCDA-PATSLDHVVPRSRGGAHVWENVVSCCRRCNHIK 124
Query: 221 GKKTLEEANMQLSRVPKAP 239
G +T+ E +L R P+AP
Sbjct: 125 GDRTVAELGWRLRRPPRAP 143
>gi|357416930|ref|YP_004929950.1| hypothetical protein DSC_06290 [Pseudoxanthomonas spadix BD-a59]
gi|355334508|gb|AER55909.1| hypothetical protein DSC_06290 [Pseudoxanthomonas spadix BD-a59]
Length = 182
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 73/150 (48%), Gaps = 12/150 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
+ LD R ++ + W+ A CL + A D + G+ + L +V
Sbjct: 1 MSLDAHGRVLDWINWQDATCL-YARDAVAWTLGDPCLTVRGGTNRLTGQQSFIELHPIVA 59
Query: 161 RR--------RIKNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENL 209
R +L+ + L RD+ C YC SR+ LT DHV+P S+GG WEN+
Sbjct: 60 SRGHARAAGLSPTPSLTNQALFARDDHLCLYCGQQFSRQLLTRDHVLPVSKGGRDTWENV 119
Query: 210 VAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
V+ACF CNSRK +T ++A+M L VP P
Sbjct: 120 VSACFHCNSRKANRTPQQAHMPLLAVPYRP 149
>gi|289661728|ref|ZP_06483309.1| HNH endonuclease family protein [Xanthomonas campestris pv.
vasculorum NCPPB 702]
Length = 209
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query: 167 NLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKK 223
LS L RD+ C YC SR +LT DHV+P S+GG WEN+V ACF+CNSRK +
Sbjct: 101 TLSNTALFARDSQLCMYCGQHFSRPHLTRDHVMPVSKGGRDSWENVVTACFQCNSRKANR 160
Query: 224 TLEEANMQLSRVPKAP 239
T ++A+M L VP P
Sbjct: 161 TPQQAHMPLLAVPYRP 176
>gi|432339607|ref|ZP_19589273.1| hypothetical protein Rwratislav_22872 [Rhodococcus wratislaviensis
IFP 2016]
gi|430775195|gb|ELB90739.1| hypothetical protein Rwratislav_22872 [Rhodococcus wratislaviensis
IFP 2016]
Length = 183
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 74/147 (50%), Gaps = 4/147 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT--INSPNGSFYIPAVLRVRHLLQV 158
LVL+++Y + + +RA+ L + A+ + + I S + +P +R+ + V
Sbjct: 24 LVLNVTYEALCGIPAERAVVLISVGAAETVADREPPFPIRSQHVEISLPRTIRLLRYVHV 83
Query: 159 VKRRRIKNN--LSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+ ++ + + RD C YC+ TIDHV+P SRGG W NLVA C C
Sbjct: 84 PHSVLVTDSSRATFAGVFRRDRNRCGYCAEPVATTIDHVLPRSRGGPNTWANLVACCIPC 143
Query: 217 NSRKGKKTLEEANMQLSRVPKAPKDYD 243
N RK +T EEA M L PKAP+ +
Sbjct: 144 NQRKADRTPEEAGMPLLWEPKAPRHIE 170
>gi|390991743|ref|ZP_10261999.1| HNH endonuclease family protein [Xanthomonas axonopodis pv. punicae
str. LMG 859]
gi|372553496|emb|CCF68974.1| HNH endonuclease family protein [Xanthomonas axonopodis pv. punicae
str. LMG 859]
Length = 209
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query: 167 NLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKK 223
LS L RD+ C YC SR +LT DHV+P S+GG WEN+V ACF+CNSRK +
Sbjct: 101 TLSNTALFARDSQLCMYCGQHFSRPHLTRDHVMPVSKGGRDSWENVVTACFQCNSRKANR 160
Query: 224 TLEEANMQLSRVPKAP 239
T ++A+M L VP P
Sbjct: 161 TPQQAHMPLLAVPYRP 176
>gi|58581641|ref|YP_200657.1| hypothetical protein XOO2018 [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|58426235|gb|AAW75272.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC
10331]
Length = 229
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 73/159 (45%), Gaps = 12/159 (7%)
Query: 92 FDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLR 151
+L R L LD R ++ + W+ A CL + A + + G +
Sbjct: 28 IHQLPTLRLLSLDAHGRVLDWINWQDAACL-YARDAVSWTLGEPCMQIHGGISRLTGERS 86
Query: 152 VRHLLQVVKRRRIKNN--------LSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASR 200
L ++ R + LS L RD C YC SR +LT DHV+P S+
Sbjct: 87 TLELHPIIAARGHARSRALDPTPTLSNTALFARDAQLCMYCGQHFSRPHLTRDHVMPVSK 146
Query: 201 GGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
GG WEN+V ACF+CNSRK +T ++A+M L VP P
Sbjct: 147 GGRDSWENVVTACFQCNSRKANRTPQQAHMPLLAVPYRP 185
>gi|77747889|ref|NP_637786.2| hypothetical protein XCC2433 [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|77761161|ref|YP_242765.2| hypothetical protein XC_1679 [Xanthomonas campestris pv. campestris
str. 8004]
Length = 218
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 73/156 (46%), Gaps = 12/156 (7%)
Query: 95 LACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRH 154
L R L LD R ++ + W+ A CL + A + + G + V
Sbjct: 31 LPTVRLLSLDAHGRVLDWINWQDAACL-YARDAVSWTLGEPCMQIHGGVSRLTGERSVLE 89
Query: 155 LLQVVKRR--------RIKNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGE 203
L ++ R L+ L RD+ C YC SR +LT DHV+P S+GG
Sbjct: 90 LHPIIAARGHARSRALDPTPTLTNTALFARDSQLCMYCGQHFSRPHLTRDHVMPVSKGGR 149
Query: 204 WKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
WEN+V ACF+CNSRK +T ++A+M L VP P
Sbjct: 150 DSWENVVTACFQCNSRKANRTPQQAHMPLLAVPYRP 185
>gi|418667933|ref|ZP_13229338.1| HNH endonuclease domain protein [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|410756378|gb|EKR18003.1| HNH endonuclease domain protein [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
Length = 209
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 93/194 (47%), Gaps = 33/194 (17%)
Query: 96 ACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT--INSPNGSFYIPAVLRVR 153
+C G + RP + K A+ L +EKA +++ D++ I S F P ++ +R
Sbjct: 29 SCAAGACAECRLRPHRIRSVKDALILIILEKAQLIKD-DKSLFIRSEKLRFTAPRIILLR 87
Query: 154 HLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWK----- 205
+V R K+ +SR+N+ RDN+ C YC + LT+DHV+P SR W+
Sbjct: 88 DYYKVPPR---KDKVSRENIFQRDNYHCVYCGKKFPSSKLTLDHVIPRSR---WEHVPKK 141
Query: 206 --------WENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRML 257
WENLVAAC CN+RKG K L E L P+ + L PL S +
Sbjct: 142 ERPKEFNSWENLVAACKNCNTRKGNKLLTELKWNL---PEENRVTPKLRFPLFS-----I 193
Query: 258 RVRKGTPVEWRQYL 271
++ WR+Y+
Sbjct: 194 TDQQAEKFGWREYI 207
>gi|418749703|ref|ZP_13305991.1| HNH endonuclease domain protein [Leptospira licerasiae str.
MMD4847]
gi|418759181|ref|ZP_13315361.1| HNH endonuclease domain protein [Leptospira licerasiae serovar
Varillal str. VAR 010]
gi|384113672|gb|EID99936.1| HNH endonuclease domain protein [Leptospira licerasiae serovar
Varillal str. VAR 010]
gi|404274588|gb|EJZ41906.1| HNH endonuclease domain protein [Leptospira licerasiae str.
MMD4847]
Length = 183
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 17/146 (11%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVL-EYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ +Y PV + K A+ L + KA+++ + I S P ++ + +V
Sbjct: 9 LVLNATYVPVAIRTVKDAVILLILRKAELIKDEKSHFIRSEKLKLSTPRIILLTDYYKVP 68
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGE----------WKW 206
KR K+ LSR+N+ RD+ C YC + LT+DHV+P SR E W
Sbjct: 69 KR---KHKLSRENIFLRDDHECVYCRRKLPSSKLTLDHVIPKSRWEEIPREKKPKDYHTW 125
Query: 207 ENLVAACFKCNSRKGKKTLEEANMQL 232
ENLV AC CN++KG K L+E ++
Sbjct: 126 ENLVTACRDCNTKKGNKLLQELKWEI 151
>gi|359689669|ref|ZP_09259670.1| HNH endonuclease family protein [Leptospira licerasiae serovar
Varillal str. MMD0835]
Length = 176
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 17/146 (11%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVL-EYYDQTINSPNGSFYIPAVLRVRHLLQVV 159
LVL+ +Y PV + K A+ L + KA+++ + I S P ++ + +V
Sbjct: 2 LVLNATYVPVAIRTVKDAVILLILRKAELIKDEKSHFIRSEKLKLSTPRIILLTDYYKVP 61
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGE----------WKW 206
KR K+ LSR+N+ RD+ C YC + LT+DHV+P SR E W
Sbjct: 62 KR---KHKLSRENIFLRDDHECVYCRRKLPSSKLTLDHVIPKSRWEEIPREKKPKDYHTW 118
Query: 207 ENLVAACFKCNSRKGKKTLEEANMQL 232
ENLV AC CN++KG K L+E ++
Sbjct: 119 ENLVTACRDCNTKKGNKLLQELKWEI 144
>gi|84623558|ref|YP_450930.1| hypothetical protein XOO_1901 [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188577121|ref|YP_001914050.1| HNH endonuclease [Xanthomonas oryzae pv. oryzae PXO99A]
gi|84367498|dbj|BAE68656.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188521573|gb|ACD59518.1| HNH endonuclease family protein [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 220
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 73/159 (45%), Gaps = 12/159 (7%)
Query: 92 FDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLR 151
+L R L LD R ++ + W+ A CL + A + + G +
Sbjct: 19 IHQLPTLRLLSLDAHGRVLDWINWQDAACL-YARDAVSWTLGEPCMQIHGGISRLTGERS 77
Query: 152 VRHLLQVVKRRRIKNN--------LSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASR 200
L ++ R + LS L RD C YC SR +LT DHV+P S+
Sbjct: 78 TLELHPIIAARGHARSRALDPTPTLSNTALFARDAQLCMYCGQHFSRPHLTRDHVMPVSK 137
Query: 201 GGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
GG WEN+V ACF+CNSRK +T ++A+M L VP P
Sbjct: 138 GGRDSWENVVTACFQCNSRKANRTPQQAHMPLLAVPYRP 176
>gi|408825021|ref|ZP_11209911.1| HNH endonuclease [Pseudomonas geniculata N1]
Length = 214
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQV 158
R L LD R ++ + W+ A CL + +A D ++ G+ + L +
Sbjct: 31 RLLSLDAHGRVLDWITWQDAACL-YAREAVAWTLGDPCLHIHGGTNRFSGLQSGMDLHPI 89
Query: 159 VKRR--------RIKNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWE 207
+ R NL+ L RD C YC +R LT DHV+P S+GG WE
Sbjct: 90 IAARGHARSRAIDPTPNLTNPALFARDAHLCMYCGQQFNRPTLTRDHVMPLSKGGLDCWE 149
Query: 208 NLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
N+V ACF CNSRK +T ++A M L VP P
Sbjct: 150 NVVTACFHCNSRKSDRTPQQAGMPLLAVPYRP 181
>gi|398345172|ref|ZP_10529875.1| HNH family endonuclease [Leptospira inadai serovar Lyme str. 10]
Length = 183
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 17/146 (11%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT-INSPNGSFYIPAVLRVRHLLQVV 159
LVL+ +Y PV + + AI L + KA +++ + I S P ++ + +V
Sbjct: 9 LVLNATYVPVAIRTVRDAIVLLLLNKAQLIKDEKKLLIRSEKLKLTAPRIILLTDYYKVP 68
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGE----------WKW 206
++R + LSR+N+ RDN+ C YC + LT+DHV+P SR E W
Sbjct: 69 RKR---HKLSRENIFLRDNYECVYCKRKLPTSRLTLDHVIPKSRWEEIAKERKPAEYHTW 125
Query: 207 ENLVAACFKCNSRKGKKTLEEANMQL 232
ENLV AC CN++KG K L E +L
Sbjct: 126 ENLVTACRDCNTKKGNKLLHELKWEL 151
>gi|223935746|ref|ZP_03627662.1| HNH endonuclease [bacterium Ellin514]
gi|223895754|gb|EEF62199.1| HNH endonuclease [bacterium Ellin514]
Length = 194
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 23/162 (14%)
Query: 113 VCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKN 172
V W + L E+ D+ + + G+ +P V+ + + +V K+R K
Sbjct: 51 VSWAEWLTLPIREQ-------DEAVRTVRGAIRMPTVIVLANFAKVPKKR---PKFGAKA 100
Query: 173 LMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEAN 229
+ RD CQY E +IDH++P SRGG+ W+N V AC NSRKG + +EA
Sbjct: 101 IRERDGNRCQYTGRVLKPEEGSIDHILPVSRGGKDAWDNCVWACKAINSRKGNRLPDEAG 160
Query: 230 MQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
++L +PKAPK+ +P+T+ ++R +G +WR +L
Sbjct: 161 LKLLTMPKAPKE-----LPMTA----LIRNHQGI-ADWRLFL 192
>gi|254523198|ref|ZP_05135253.1| HNH endonuclease family protein [Stenotrophomonas sp. SKA14]
gi|219720789|gb|EED39314.1| HNH endonuclease family protein [Stenotrophomonas sp. SKA14]
Length = 214
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 77/177 (43%), Gaps = 13/177 (7%)
Query: 75 SGKGISGESEEYDSD-EEFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYY 133
+G IS E + R L LD R ++ + W+ A CL + +A
Sbjct: 6 AGAPISAPGAEASPNVTPLHRPGSVRLLSLDAHGRVLDWITWQDAACL-YAREAVAWTLG 64
Query: 134 DQTINSPNGSFYIPAVLRVRHLLQVVKRR--------RIKNNLSRKNLMYRDNFTCQYCS 185
D ++ G+ + L ++ R NL+ L RD C YC
Sbjct: 65 DPCLHIHGGTNRFSGLQSGMDLHPIIAARGHARSRAIDPTPNLTNPALFARDAHLCMYCG 124
Query: 186 ---SRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
+R LT DHV+P S+GG WEN+V ACF CNSRK +T ++A M L VP P
Sbjct: 125 QQFNRPTLTRDHVMPLSKGGLDCWENVVTACFYCNSRKSDRTPQQAGMPLLAVPYRP 181
>gi|367470470|ref|ZP_09470170.1| HNH endonuclease family protein [Patulibacter sp. I11]
gi|365814430|gb|EHN09628.1| HNH endonuclease family protein [Patulibacter sp. I11]
Length = 97
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 168 LSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEE 227
++R+ + RD++TCQYC SR +LT+DHV+P S+GG +WEN+VA C CN RK + +
Sbjct: 1 MTRRAVFARDDWTCQYCGSRSDLTVDHVIPRSKGGSSEWENIVACCSTCNRRKADRLPHQ 60
Query: 228 ANM 230
A M
Sbjct: 61 ARM 63
>gi|269956596|ref|YP_003326385.1| HNH endonuclease [Xylanimonas cellulosilytica DSM 15894]
gi|269305277|gb|ACZ30827.1| HNH endonuclease [Xylanimonas cellulosilytica DSM 15894]
Length = 148
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 70/140 (50%), Gaps = 5/140 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLR-VRHLLQVV 159
LVL+ Y P++ V + AI + A V E + P + +P VLR VR++
Sbjct: 5 LVLNAGYEPLHRVSVRHAIHMLVRGVAVVEESVGERTFGP---YPLPRVLRLVRYVAMKW 61
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ RR + K + + C YC + T+DHVVP SRGG+ W NLVAAC CN R
Sbjct: 62 RYRRDQAPSCTKAGVRARDGRCAYCGGPAD-TVDHVVPRSRGGDSSWLNLVAACGACNGR 120
Query: 220 KGKKTLEEANMQLSRVPKAP 239
K +T EA M L P P
Sbjct: 121 KADRTPAEAGMVLRLTPHVP 140
>gi|21113590|gb|AAM41710.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66573335|gb|AAY48745.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. 8004]
Length = 209
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query: 167 NLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKK 223
L+ L RD+ C YC SR +LT DHV+P S+GG WEN+V ACF+CNSRK +
Sbjct: 101 TLTNTALFARDSQLCMYCGQHFSRPHLTRDHVMPVSKGGRDSWENVVTACFQCNSRKANR 160
Query: 224 TLEEANMQLSRVPKAP 239
T ++A+M L VP P
Sbjct: 161 TPQQAHMPLLAVPYRP 176
>gi|90022857|ref|YP_528684.1| hypothetical protein Sde_3215 [Saccharophagus degradans 2-40]
gi|89952457|gb|ABD82472.1| HNH endonuclease [Saccharophagus degradans 2-40]
Length = 193
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 82/160 (51%), Gaps = 13/160 (8%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQV 158
R L L+I+ +P+ + W++A+ +E + V + + + G + R R L
Sbjct: 4 RILRLNIAGQPIEWLHWQQAVTVE--ARGLVAWRLGEVVRTVRGGRCRLSGKRTRMALSS 61
Query: 159 V------KRRRIKNN--LSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWE 207
+ + +K N L+ L RD C YC + +L+ DHV P+SRGGE KWE
Sbjct: 62 IIACDGERMTPVKANPPLTNSALFLRDKNQCLYCGQIFTFADLSRDHVHPSSRGGEDKWE 121
Query: 208 NLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAI 247
N+VAAC +CN +KG L E +M L +P P Y+ LA+
Sbjct: 122 NVVAACKRCNQKKGDSLLSEIDMPLIALPYRPNPYEYLAL 161
>gi|372267516|ref|ZP_09503564.1| HNH endonuclease domain-containing protein [Alteromonas sp. S89]
Length = 195
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 78/163 (47%), Gaps = 9/163 (5%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEK-----ADVLEYYDQTINSPNGSFYIPAVLRVRHL 155
L L+++ +P+ + W+ A CL E V++ IN + +
Sbjct: 6 LRLNLAGQPLEWLSWEEAACLYVRELVTWTLGGVVQTVHGGINRQGERSTLDLAAIIACG 65
Query: 156 LQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAA 212
+ R R + L+ + L RD TC YC S +LT DHV P S+GG WEN+V A
Sbjct: 66 GDRMARPRNRPPLNNRALFARDQHTCLYCGSWFPIRDLTRDHVHPVSKGGRDTWENVVTA 125
Query: 213 CFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIR 255
C +CN KG + LE +M+L +P P + LA+ SA IR
Sbjct: 126 CRRCNQHKGSRLLEHIDMELLALPFVPNAAEYLALT-NSARIR 167
>gi|289668681|ref|ZP_06489756.1| HNH endonuclease family protein [Xanthomonas campestris pv.
musacearum NCPPB 4381]
Length = 174
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query: 167 NLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKK 223
LS L RD+ C YC SR +LT DHV+P S+GG WEN+V ACF+CNSRK +
Sbjct: 66 TLSNTALFARDSQLCMYCGQHFSRPHLTRDHVMPVSKGGRDSWENVVTACFQCNSRKANR 125
Query: 224 TLEEANMQLSRVPKAP 239
T ++A+M L VP P
Sbjct: 126 TPQQAHMPLLAVPYRP 141
>gi|330470428|ref|YP_004408171.1| hnh endonuclease [Verrucosispora maris AB-18-032]
gi|328813399|gb|AEB47571.1| hnh endonuclease [Verrucosispora maris AB-18-032]
Length = 147
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 169 SRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEA 228
SR ++ RD C YC + TIDH++P SRGG W+N AAC+ CN RKG +T EA
Sbjct: 70 SRAGVLARDGRCCAYCDGPAS-TIDHILPRSRGGRNTWKNTTAACYACNQRKGDRTPAEA 128
Query: 229 NMQLSRVPKAP 239
M L RVP AP
Sbjct: 129 GMPLRRVPVAP 139
>gi|398808938|ref|ZP_10567794.1| restriction endonuclease [Variovorax sp. CF313]
gi|398086519|gb|EJL77133.1| restriction endonuclease [Variovorax sp. CF313]
Length = 187
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 167 NLSRKNLMYRDNFTCQYCSS---RENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKK 223
++++ L+ RD TC YC L +HV+P SRGG W W NLV+AC CN+RK +
Sbjct: 80 SVTKSKLLRRDRHTCAYCGEVFHERELQCEHVLPESRGGPWTWTNLVSACGVCNNRKAAR 139
Query: 224 TLEEANMQLSRVPKAPKDYD 243
T EEA M L +P P Y+
Sbjct: 140 TPEEAGMPLVYLPYVPNRYE 159
>gi|386850817|ref|YP_006268830.1| HNH endonuclease [Actinoplanes sp. SE50/110]
gi|359838321|gb|AEV86762.1| HNH endonuclease [Actinoplanes sp. SE50/110]
Length = 147
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 4/139 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ P+ V + A+ + + V E +D + G + +P V+R+ +
Sbjct: 5 LVLNADMEPLTRVSLRHAVKMLVRQ---VAEIHDHVPDRAIGIWPVPTVVRLVRWVYARW 61
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
R SR+ ++ RD+ C YC + T+DH+VP S+GG+ W N +AAC+ CN RK
Sbjct: 62 RHTDGPAWSRRGVLARDHRRCGYCR-QSATTVDHIVPRSQGGQNTWLNTIAACYACNQRK 120
Query: 221 GKKTLEEANMQLSRVPKAP 239
+T +A M L P+ P
Sbjct: 121 ADRTPRQAGMVLRFEPRTP 139
>gi|419966154|ref|ZP_14482087.1| hypothetical protein WSS_A28540 [Rhodococcus opacus M213]
gi|414568547|gb|EKT79307.1| hypothetical protein WSS_A28540 [Rhodococcus opacus M213]
Length = 183
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 74/147 (50%), Gaps = 4/147 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT--INSPNGSFYIPAVLRVRHLLQV 158
LVL+++Y + + +RA+ L + A+ + + I S + +P +R+ + V
Sbjct: 24 LVLNVTYEALCEIPAERAVVLISVGAAETVTDREPPFPIRSQHVEISLPRTIRLLRYVYV 83
Query: 159 VKRRRIKNN--LSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+ ++ + + RD C YC+ TIDHV+P SRGG W NLVA C C
Sbjct: 84 PHSVLVTDSSRATFAGVFRRDRNRCGYCAEPVATTIDHVLPRSRGGPNTWANLVACCIPC 143
Query: 217 NSRKGKKTLEEANMQLSRVPKAPKDYD 243
N RK +T EEA M L PKAP+ +
Sbjct: 144 NQRKADRTPEEAGMPLLWEPKAPRHIE 170
>gi|226360458|ref|YP_002778236.1| hypothetical protein ROP_10440 [Rhodococcus opacus B4]
gi|226238943|dbj|BAH49291.1| hypothetical protein [Rhodococcus opacus B4]
Length = 183
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 74/151 (49%), Gaps = 12/151 (7%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT--INSPNGSFYIPAVLR------V 152
LVL+++Y + + +RA+ L + A+ + + I S + +P +R V
Sbjct: 24 LVLNVTYEALCEIPAERAVVLISVGAAETVADREPPFPIRSQHVEIRLPQTIRLLRYVYV 83
Query: 153 RHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAA 212
+H + V R + + RD C YC+ TIDHV+P SRGG W NLVA
Sbjct: 84 QHSVLVTDSSRA----TFAGVFRRDRNRCGYCAEPVATTIDHVLPRSRGGPNTWANLVAC 139
Query: 213 CFKCNSRKGKKTLEEANMQLSRVPKAPKDYD 243
C CN RK +T EEA M L PKAP+ +
Sbjct: 140 CVPCNQRKADRTPEEAGMPLLWEPKAPRHIE 170
>gi|88704857|ref|ZP_01102570.1| HNH endonuclease domain protein [Congregibacter litoralis KT71]
gi|88701178|gb|EAQ98284.1| HNH endonuclease domain protein [Congregibacter litoralis KT71]
Length = 183
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 168 LSRKNLMYRDNFTCQYCSS---RENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
L + L RD+ C YC + R +LT DHV+P SRGG +WEN+VAAC +CN +K KT
Sbjct: 76 LCNRTLFRRDDHRCLYCGTQYGRSDLTRDHVLPVSRGGRDRWENVVAACKRCNWQKDNKT 135
Query: 225 LEEANMQLSRVPKAPKDYD 243
EEA M L +P P Y+
Sbjct: 136 PEEAGMPLLAIPFRPNTYE 154
>gi|194366551|ref|YP_002029161.1| HNH endonuclease [Stenotrophomonas maltophilia R551-3]
gi|194349355|gb|ACF52478.1| HNH endonuclease [Stenotrophomonas maltophilia R551-3]
Length = 221
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 78/183 (42%), Gaps = 16/183 (8%)
Query: 68 VDASLNVSGKGISGESEEYDSDEEFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKA 127
++A +S G +E + R L LD R ++ + W+ A CL + +A
Sbjct: 11 IEAGAPISAPG----AEASPNATTLHRPGSVRLLSLDAHGRVLDWITWQDAACL-YAREA 65
Query: 128 DVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRR--------RIKNNLSRKNLMYRDNF 179
D ++ G + L ++ R NL+ L RD
Sbjct: 66 VAWTLGDPCLHIHGGINRFSGLQSGMDLHPIIAARGHARSRAIDPTPNLTNPALFARDAH 125
Query: 180 TCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVP 236
C YC R LT DHV+P S+GG WEN+V ACF CNSRK +T ++A M L VP
Sbjct: 126 LCMYCGQQFGRPTLTRDHVMPLSKGGLDCWENVVTACFHCNSRKSDRTPQQAGMPLLAVP 185
Query: 237 KAP 239
P
Sbjct: 186 YRP 188
>gi|424858643|ref|ZP_18282675.1| HNH endonuclease [Rhodococcus opacus PD630]
gi|356662330|gb|EHI42629.1| HNH endonuclease [Rhodococcus opacus PD630]
Length = 183
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 74/147 (50%), Gaps = 4/147 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT--INSPNGSFYIPAVLRVRHLLQV 158
LVL+++Y + + +RA+ L + A+ + + I S + +P +R+ + V
Sbjct: 24 LVLNVTYEALCEIPAERAVVLISVGAAETVADREPPFPIRSQHVEISLPQTIRLLRYVYV 83
Query: 159 VKRRRIKNN--LSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+ ++ + + RD C YC+ TIDHV+P SRGG W NLVA C C
Sbjct: 84 PHSVLVTDSSRATFAGVFRRDRNRCGYCAEPVATTIDHVLPRSRGGPNTWANLVACCVPC 143
Query: 217 NSRKGKKTLEEANMQLSRVPKAPKDYD 243
N RK +T EEA M L PKAP+ +
Sbjct: 144 NQRKADRTPEEAGMPLLWEPKAPRHIE 170
>gi|407803735|ref|ZP_11150568.1| hypothetical protein S7S_02804 [Alcanivorax sp. W11-5]
gi|407022338|gb|EKE34092.1| hypothetical protein S7S_02804 [Alcanivorax sp. W11-5]
Length = 178
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 163 RIKNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R + L+ + L RD C YC S ++LT DH+VP SRGG W N+VAAC +CN
Sbjct: 60 RTRPPLTNRALFRRDQNICLYCGQPFSDQSLTRDHIVPTSRGGRDTWLNVVAACRRCNQH 119
Query: 220 KGKKTLEEANMQLSRVPKAPKDYDILAI 247
KG + LEE NM+L +P P + LA+
Sbjct: 120 KGSRLLEECNMELLALPYVPNMAEYLAL 147
>gi|325915157|ref|ZP_08177483.1| restriction endonuclease [Xanthomonas vesicatoria ATCC 35937]
gi|325538679|gb|EGD10349.1| restriction endonuclease [Xanthomonas vesicatoria ATCC 35937]
Length = 185
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 167 NLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKK 223
LS L RD C YC SR +LT DHV+P S+GG WEN+V ACF+CNSRK +
Sbjct: 77 TLSNTALFARDAQLCMYCGQHFSRPHLTRDHVMPVSKGGRDSWENVVTACFQCNSRKANR 136
Query: 224 TLEEANMQLSRVPKAP 239
T ++A+M L VP P
Sbjct: 137 TPQQAHMPLLAVPYRP 152
>gi|408372818|ref|ZP_11170517.1| hypothetical protein A11A3_02027 [Alcanivorax hongdengensis A-11-3]
gi|407767170|gb|EKF75608.1| hypothetical protein A11A3_02027 [Alcanivorax hongdengensis A-11-3]
Length = 193
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 76/160 (47%), Gaps = 13/160 (8%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLE-----FMEKADVLEYYDQTINSPNG---SFYIPAVL 150
R L LD + P+ + W+ A L DV+ IN +G S + +++
Sbjct: 4 RILRLDKTGTPIEWLDWQMAAVLYARGLVTWTLGDVIYRLQGGINRLSGCRSSLSLHSII 63
Query: 151 RVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSREN---LTIDHVVPASRGGEWKWE 207
L V +RR L+ + L RD C YC N LT DH+VP SRGG W
Sbjct: 64 ACDGLAHVERRR--APPLTNRALFRRDQHLCLYCGKSFNENVLTRDHIVPTSRGGRDHWS 121
Query: 208 NLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAI 247
N+V AC +CN RKG + L E +M+L +P P + LA+
Sbjct: 122 NVVCACKRCNQRKGSRLLAEIDMELLALPYVPNMAEYLAL 161
>gi|188991129|ref|YP_001903139.1| HNH endonuclease family protein [Xanthomonas campestris pv.
campestris str. B100]
gi|167732889|emb|CAP51083.1| HNH endonuclease family protein [Xanthomonas campestris pv.
campestris]
Length = 209
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 73/159 (45%), Gaps = 12/159 (7%)
Query: 92 FDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLR 151
F L R L LD R ++ + W+ A CL + A + + G +
Sbjct: 19 FPPLPTVRLLSLDAHGRVLDWINWQDAACL-YARDAVSWTLGEPCMQIHGGVSRLTGERS 77
Query: 152 VRHLLQVVKRR--------RIKNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASR 200
V L ++ R L+ L RD+ C YC SR +LT DHV+P S+
Sbjct: 78 VLELHPIIAARGHARSRALDPTPTLTNTALFARDSQLCMYCGQHFSRPHLTRDHVMPVSK 137
Query: 201 GGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
G WEN+V ACF+CNSRK +T ++A+M L VP P
Sbjct: 138 DGRDSWENVVTACFQCNSRKANRTPQQAHMPLLAVPYRP 176
>gi|384082048|ref|ZP_09993223.1| hypothetical protein gproHI_01975 [gamma proteobacterium HIMB30]
Length = 186
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 167 NLSRKNLMYRDNFTCQYC---SSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKK 223
NL+ +L RD C YC + +LT DHVVP S+GGE W N+V+AC +CN KG K
Sbjct: 78 NLTNTSLFRRDQHLCLYCGKPNEDRHLTRDHVVPISKGGEDTWMNVVSACRRCNQFKGNK 137
Query: 224 TLEEANMQLSRVPKAPKDYDILAI 247
L+E NM+L +P P + LA+
Sbjct: 138 LLDETNMELLALPYTPNHAEYLAL 161
>gi|384428375|ref|YP_005637735.1| HNH endonuclease family protein [Xanthomonas campestris pv. raphani
756C]
gi|341937478|gb|AEL07617.1| HNH endonuclease family protein [Xanthomonas campestris pv. raphani
756C]
Length = 185
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query: 167 NLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKK 223
L+ L RD+ C YC SR +LT DHV+P S+GG WEN+V ACF+CNSRK +
Sbjct: 77 TLTNTALFARDSQLCMYCGQHFSRPHLTRDHVMPVSKGGRDSWENVVTACFQCNSRKANR 136
Query: 224 TLEEANMQLSRVPKAP 239
T ++A+M L VP P
Sbjct: 137 TPQQAHMPLLAVPYRP 152
>gi|415972006|ref|ZP_11558576.1| HNH endonuclease domain protein, partial [Acidithiobacillus sp.
GGI-221]
gi|339833657|gb|EGQ61477.1| HNH endonuclease domain protein [Acidithiobacillus sp. GGI-221]
Length = 200
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 168 LSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
L+ +L RD C YC S LT DHV+P S+GG+ W N+VAAC +CNS K KT
Sbjct: 96 LTNASLFRRDGHLCMYCGRTFSDHQLTRDHVIPTSKGGKDIWTNVVAACKRCNSHKDAKT 155
Query: 225 LEEANMQLSRVPKAPKDYDILAI 247
E+A+M+L VP P Y+ L +
Sbjct: 156 PEQASMKLLAVPYTPNQYEFLYL 178
>gi|319792351|ref|YP_004153991.1| hnh endonuclease [Variovorax paradoxus EPS]
gi|315594814|gb|ADU35880.1| HNH endonuclease [Variovorax paradoxus EPS]
Length = 187
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 167 NLSRKNLMYRDNFTCQYCSS---RENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKK 223
+++ L+ RD TC YC+ +L +HV+P SRGG W W NLV+AC CN+RK +
Sbjct: 80 GVTKGKLVRRDRHTCAYCAGVFHERDLQCEHVMPESRGGPWAWTNLVSACAVCNNRKAAR 139
Query: 224 TLEEANMQLSRVPKAPKDYD 243
T EEA M L +P P ++
Sbjct: 140 TPEEAGMPLVYLPYVPSRFE 159
>gi|111018337|ref|YP_701309.1| hypothetical protein RHA1_ro01327 [Rhodococcus jostii RHA1]
gi|110817867|gb|ABG93151.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length = 269
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 74/147 (50%), Gaps = 4/147 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT--INSPNGSFYIPAVLRVRHLLQV 158
LV++++Y + + +RA+ L + A+ + + I S + +P +R+ + V
Sbjct: 110 LVVNVTYEALCEIPAERAVVLISVGAAETVADREPPFPIRSQHVEISLPQTIRLLRYVYV 169
Query: 159 VKRRRIKNN--LSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+ ++ + + RD C YC+ TIDHV+P SRGG W NLVA C C
Sbjct: 170 PHSEMVTDSSRATFAGVFRRDRNRCGYCAEPVATTIDHVLPRSRGGPNTWANLVACCVPC 229
Query: 217 NSRKGKKTLEEANMQLSRVPKAPKDYD 243
N RK +T EEA M L PKAP+ +
Sbjct: 230 NQRKADRTPEEAGMPLLWEPKAPRHIE 256
>gi|372488362|ref|YP_005027927.1| restriction endonuclease [Dechlorosoma suillum PS]
gi|359354915|gb|AEV26086.1| restriction endonuclease [Dechlorosoma suillum PS]
Length = 210
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 168 LSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
LS + L +RD C YC S + LT DHV+P S+GG W N+VAAC CN +KG +
Sbjct: 104 LSNRELFHRDRHLCAYCGREFSSQRLTRDHVIPISKGGSDTWTNVVAACMPCNQKKGARL 163
Query: 225 LEEANMQLSRVPKAPKDYDILAI 247
LE+A M+L +P P + L +
Sbjct: 164 LEKAGMELLYLPYVPNRAEFLIL 186
>gi|379708774|ref|YP_005263979.1| putative HNH endonuclease [Nocardia cyriacigeorgica GUH-2]
gi|374846273|emb|CCF63343.1| putative HNH endonuclease [Nocardia cyriacigeorgica GUH-2]
Length = 182
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 76/143 (53%), Gaps = 5/143 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT--INSPNGSFYIPAVLRV-RHL-L 156
LVL+ SY ++ V RA+ L A+ + + I S + +P +R+ R++ L
Sbjct: 23 LVLNASYEAIDEVAADRAVVLLLSGAAESIADREPAFPIRSKHLEIVLPETIRLLRYVYL 82
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+ V + R ++ + ++ RD C YC+ T+DH+ P SRGG W NL+A C C
Sbjct: 83 EHVTQVRDESRATLAGVLRRDKHRCGYCAGWAR-TVDHIRPRSRGGPNTWANLIACCAPC 141
Query: 217 NSRKGKKTLEEANMQLSRVPKAP 239
N+ K +T EEA M+L PKAP
Sbjct: 142 NTSKADRTPEEAGMRLLWEPKAP 164
>gi|77747570|ref|NP_299198.2| hypothetical protein XF1912 [Xylella fastidiosa 9a5c]
Length = 201
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 72/156 (46%), Gaps = 12/156 (7%)
Query: 96 ACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHL 155
A R L LD R ++ + W+ A CL ++ A D ++ G + V L
Sbjct: 14 ASMRFLSLDACGRVLDWISWQDAACL-YVRDAVSWTLGDPCLSIHGGISRLTGQRSVIAL 72
Query: 156 LQVVKRRRIKNN--------LSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEW 204
++ R L+ + L RD+ C YC SR LT DHV+P S+GG
Sbjct: 73 HPIIASRGHAGTCVPVPTPALTNQALFARDDHLCLYCGQQFSRFQLTRDHVIPISKGGLD 132
Query: 205 KWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPK 240
WEN+V ACF CNS K +T ++A M L VP P
Sbjct: 133 TWENVVTACFHCNSLKANRTPQQAGMPLLAVPYRPS 168
>gi|9107010|gb|AAF84718.1|AE004011_3 hypothetical protein XF_1912 [Xylella fastidiosa 9a5c]
Length = 204
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 72/156 (46%), Gaps = 12/156 (7%)
Query: 96 ACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHL 155
A R L LD R ++ + W+ A CL ++ A D ++ G + V L
Sbjct: 17 ASMRFLSLDACGRVLDWISWQDAACL-YVRDAVSWTLGDPCLSIHGGISRLTGQRSVIAL 75
Query: 156 LQVVKRRRIKNN--------LSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEW 204
++ R L+ + L RD+ C YC SR LT DHV+P S+GG
Sbjct: 76 HPIIASRGHAGTCVPVPTPALTNQALFARDDHLCLYCGQQFSRFQLTRDHVIPISKGGLD 135
Query: 205 KWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPK 240
WEN+V ACF CNS K +T ++A M L VP P
Sbjct: 136 TWENVVTACFHCNSLKANRTPQQAGMPLLAVPYRPS 171
>gi|28198781|ref|NP_779095.1| hypothetical protein PD0879 [Xylella fastidiosa Temecula1]
gi|28056872|gb|AAO28744.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
Length = 201
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 73/155 (47%), Gaps = 12/155 (7%)
Query: 96 ACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHL 155
A R L LD R ++ + W+ A CL ++ A D ++ G + V L
Sbjct: 14 ASMRFLSLDAYGRVLDWISWQDAACL-YVRNAVSWTLGDPCLSIHGGISRLTGKRSVIAL 72
Query: 156 LQVVKRRRIKNN--------LSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEW 204
++ R L+ + L RD+ C YC SR LT DHV+P S+GG
Sbjct: 73 HPIIASRGHARTYVPVPTPALTNQALFARDDHLCLYCGQQFSRFQLTRDHVIPISKGGLD 132
Query: 205 KWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
WEN+V ACF CNS K +T ++A M+L VP P
Sbjct: 133 TWENVVTACFHCNSLKANRTPQQAGMRLLAVPYRP 167
>gi|384916764|ref|ZP_10016911.1| Restriction endonuclease, McrA/HNH family [Methylacidiphilum
fumariolicum SolV]
gi|384525850|emb|CCG92784.1| Restriction endonuclease, McrA/HNH family [Methylacidiphilum
fumariolicum SolV]
Length = 205
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 67/115 (58%), Gaps = 8/115 (6%)
Query: 121 LEFMEKADVLEYY--DQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDN 178
L+F E + + Y +++ + +P V+ + L + V R+ +K +R N+ RD
Sbjct: 53 LDFFEWKEHSQAYHGSDVVHTVSFKIRVPKVILLL-LFEKVPRKEVK--FTRHNVFERDG 109
Query: 179 FTCQYCSSREN---LTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANM 230
+ CQYC + + L +DHV+P RGG+ WEN+V +C +CNS+KG +T +EA M
Sbjct: 110 YLCQYCGGKFDPSYLNLDHVIPRERGGKTTWENVVCSCIRCNSKKGNRTPQEAGM 164
>gi|124262835|ref|YP_001023305.1| hypothetical protein Mpe_B0295 [Methylibium petroleiphilum PM1]
gi|124262081|gb|ABM97070.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
Length = 187
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 164 IKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
I+ +R LM RD FTC YC +LT+DH++P SRGG W VA+C CN RK
Sbjct: 77 IEPAFARDKLMRRDRFTCAYCGDTFPDRDLTVDHILPQSRGGRDGWMECVASCSACNFRK 136
Query: 221 GKKTLEEANMQLSRVPKAPKDYDILAI 247
+T EEA M L +P P ++ +
Sbjct: 137 ADRTPEEAGMPLLYLPYVPSLFETFLL 163
>gi|397730676|ref|ZP_10497434.1| HNH endonuclease family protein [Rhodococcus sp. JVH1]
gi|396933576|gb|EJJ00728.1| HNH endonuclease family protein [Rhodococcus sp. JVH1]
Length = 183
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 74/147 (50%), Gaps = 4/147 (2%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT--INSPNGSFYIPAVLRVRHLLQV 158
LVL+++Y + + +RA+ L + A+ + + I S + +P +R+ + V
Sbjct: 24 LVLNVTYEALCEIPAERAVVLISVGAAETVADREPPFPIRSQHVEISLPQTIRLLRYVYV 83
Query: 159 VKRRRIKNN--LSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 216
+ ++ + + RD C YC+ TIDHV+P SRGG W NLVA C C
Sbjct: 84 PHSVLVTDSSRATFAGVFRRDRNRCGYCAEPVATTIDHVLPRSRGGPNTWANLVACCVPC 143
Query: 217 NSRKGKKTLEEANMQLSRVPKAPKDYD 243
N R+ +T EEA M L PKAP+ +
Sbjct: 144 NQREADRTPEEAGMPLLWEPKAPRHIE 170
>gi|380512184|ref|ZP_09855591.1| hypothetical protein XsacN4_13251 [Xanthomonas sacchari NCPPB 4393]
Length = 174
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 167 NLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKK 223
L+ L RD C YC SR LT DHV+P S+GG WEN+V ACF CNSRKG +
Sbjct: 66 TLTNTALFARDAQLCLYCGQQFSRPQLTRDHVLPVSKGGRDIWENVVTACFHCNSRKGNR 125
Query: 224 TLEEANMQLSRVPKAP 239
T ++A+M L VP P
Sbjct: 126 TPQQASMPLLAVPYRP 141
>gi|71728458|gb|EAO30620.1| HNH endonuclease [Xylella fastidiosa Ann-1]
Length = 204
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 72/155 (46%), Gaps = 12/155 (7%)
Query: 96 ACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHL 155
A R L LD R ++ + W+ A CL ++ A D ++ G + V L
Sbjct: 17 ASMRFLSLDAYGRVLDWISWQDAACL-YVRNAVSWTLGDPCLSIHGGISRLTGKRSVIAL 75
Query: 156 LQVVKRRRIKNN--------LSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEW 204
++ R L+ + L RD+ C YC SR LT DHV+P S+GG
Sbjct: 76 HPIIASRGHARTCVPVPTPALTNQALFARDDHLCLYCGQQFSRFQLTRDHVIPISKGGLD 135
Query: 205 KWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
WEN+V ACF CNS K +T ++A M L VP P
Sbjct: 136 TWENVVTACFHCNSLKANRTPQQAGMPLLAVPYRP 170
>gi|71275809|ref|ZP_00652093.1| HNH endonuclease [Xylella fastidiosa Dixon]
gi|170730209|ref|YP_001775642.1| hypothetical protein Xfasm12_1053 [Xylella fastidiosa M12]
gi|71163387|gb|EAO13105.1| HNH endonuclease [Xylella fastidiosa Dixon]
gi|71729840|gb|EAO31938.1| HNH endonuclease [Xylella fastidiosa Ann-1]
gi|167965002|gb|ACA12012.1| conserved hypothetical protein [Xylella fastidiosa M12]
Length = 204
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 72/155 (46%), Gaps = 12/155 (7%)
Query: 96 ACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHL 155
A R L LD R ++ + W+ A CL ++ A D ++ G + V L
Sbjct: 17 ASMRFLSLDAYGRVLDWISWQDAACL-YVRDAVSWTLGDPCLSIHGGISRLTGKRSVIAL 75
Query: 156 LQVVKRRRIKNN--------LSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEW 204
++ R L+ + L RD+ C YC SR LT DHV+P S+GG
Sbjct: 76 HPIIASRGHARTCVPVPTPALTNQALFARDDHLCLYCGQQFSRFQLTRDHVIPISKGGLD 135
Query: 205 KWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
WEN+V ACF CNS K +T ++A M L VP P
Sbjct: 136 TWENVVTACFHCNSLKANRTPQQAGMPLLAVPYRP 170
>gi|406596710|ref|YP_006747840.1| restriction endonuclease [Alteromonas macleodii ATCC 27126]
gi|407683713|ref|YP_006798887.1| restriction endonuclease [Alteromonas macleodii str. 'English
Channel 673']
gi|407687651|ref|YP_006802824.1| restriction endonuclease [Alteromonas macleodii str. 'Balearic Sea
AD45']
gi|406374031|gb|AFS37286.1| restriction endonuclease [Alteromonas macleodii ATCC 27126]
gi|407245324|gb|AFT74510.1| restriction endonuclease [Alteromonas macleodii str. 'English
Channel 673']
gi|407291031|gb|AFT95343.1| restriction endonuclease [Alteromonas macleodii str. 'Balearic Sea
AD45']
Length = 184
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 165 KNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
K L+ + L RD++ C YC ++ + LT DH++P SRGG+ W N+ AC +CN KG
Sbjct: 72 KVALTNRYLFRRDSYLCMYCGNKFTPKQLTRDHIIPRSRGGKDSWTNVATACQRCNHAKG 131
Query: 222 KKTLEEANMQLSRVPKAPKDYD 243
KT EEANM L VP P Y+
Sbjct: 132 AKTPEEANMPLLAVPFRPNVYE 153
>gi|397691544|ref|YP_006528798.1| HNH endonuclease [Melioribacter roseus P3M]
gi|395813036|gb|AFN75785.1| HNH endonuclease [Melioribacter roseus P3M]
Length = 90
Score = 75.5 bits (184), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/67 (50%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 174 MYRDNFTCQYCSSRE-NLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQL 232
M RD C YC + LT+DH++P SRGG WENLVAAC CN++KG +T +EA M+L
Sbjct: 1 MKRDGHRCAYCGRGDLPLTVDHIIPKSRGGADTWENLVAACLPCNNKKGDRTPDEAGMKL 60
Query: 233 SRVPKAP 239
P P
Sbjct: 61 RIKPFTP 67
>gi|254283486|ref|ZP_04958454.1| HNH endonuclease domain protein [gamma proteobacterium NOR51-B]
gi|219679689|gb|EED36038.1| HNH endonuclease domain protein [gamma proteobacterium NOR51-B]
Length = 183
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 168 LSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
L + L RD+ C YC SR LT DHV+P SRGG+ +WEN+VAAC +CN K +T
Sbjct: 76 LCNRTLFRRDDHRCLYCGQQFSRSELTRDHVLPVSRGGDNRWENVVAACRRCNWAKDNRT 135
Query: 225 LEEANMQLSRVPKAPKDYD 243
EEA M L VP P ++
Sbjct: 136 PEEAGMPLLAVPFRPNSHE 154
>gi|377568477|ref|ZP_09797665.1| hypothetical protein GOTRE_026_00820 [Gordonia terrae NBRC 100016]
gi|377534365|dbj|GAB42830.1| hypothetical protein GOTRE_026_00820 [Gordonia terrae NBRC 100016]
Length = 106
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 168 LSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEE 227
++R LM RD C YC +R TIDHV+P SRGG WEN VA C CN RK + E
Sbjct: 9 MTRAALMRRDRMRCGYCGARAT-TIDHVIPRSRGGAHTWENCVACCASCNHRKADRLTGE 67
Query: 228 ANMQLSRVPKAPK 240
L VP APK
Sbjct: 68 LGWTLRTVPAAPK 80
>gi|182681480|ref|YP_001829640.1| HNH endonuclease [Xylella fastidiosa M23]
gi|386084988|ref|YP_006001270.1| hypothetical protein XFLM_10125 [Xylella fastidiosa subsp.
fastidiosa GB514]
gi|417558567|ref|ZP_12209534.1| Restriction endonuclease McrA [Xylella fastidiosa EB92.1]
gi|182631590|gb|ACB92366.1| HNH endonuclease [Xylella fastidiosa M23]
gi|307579935|gb|ADN63904.1| hypothetical protein XFLM_10125 [Xylella fastidiosa subsp.
fastidiosa GB514]
gi|338178873|gb|EGO81851.1| Restriction endonuclease McrA [Xylella fastidiosa EB92.1]
Length = 186
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 72/153 (47%), Gaps = 12/153 (7%)
Query: 98 FRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQ 157
R L LD R ++ + W+ A CL ++ A D ++ G + V L
Sbjct: 1 MRFLSLDAYGRVLDWISWQDAACL-YVRNAVSWTLGDPCLSIHGGISRLTGKRSVIALHP 59
Query: 158 VVKRRRIKNN--------LSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKW 206
++ R L+ + L RD+ C YC SR LT DHV+P S+GG W
Sbjct: 60 IIASRGHARTYVPVPTPALTNQALFARDDHLCLYCGQQFSRFQLTRDHVIPISKGGLDTW 119
Query: 207 ENLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
EN+V ACF CNS K +T ++A M+L VP P
Sbjct: 120 ENVVTACFHCNSLKANRTPQQAGMRLLAVPYRP 152
>gi|83643265|ref|YP_431700.1| restriction endonuclease [Hahella chejuensis KCTC 2396]
gi|83631308|gb|ABC27275.1| Restriction endonuclease [Hahella chejuensis KCTC 2396]
Length = 178
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 168 LSRKNLMYRDNFTCQYCSSREN---LTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
L + L RD+F C YC + + L+ DH+VP SRGG W N+V AC +CN KG +
Sbjct: 74 LLNRYLFSRDSFRCMYCGEKFHHSLLSRDHIVPLSRGGRNVWTNVVTACKRCNGHKGARL 133
Query: 225 LEEANMQLSRVPKAPKDYDILAI 247
L E NM+L VP P Y+ L +
Sbjct: 134 LSECNMELLAVPYTPNRYEYLYL 156
>gi|389722020|ref|ZP_10188717.1| restriction endonuclease [Rhodanobacter sp. 115]
gi|388444649|gb|EIM00747.1| restriction endonuclease [Rhodanobacter sp. 115]
Length = 200
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 12/158 (7%)
Query: 94 ELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNG---SFYIPAVL 150
+L R L LD + R ++ + W+ A+CL ++ A D + G + + + L
Sbjct: 10 DLHSTRVLSLDAAGRILDWISWQDAVCL-YVRDAVAWTLGDPCLTVHGGQNRALGVQSTL 68
Query: 151 RVRHLLQVVKRRR-----IKNNLSRKNLMYRDNFTCQYCSS---RENLTIDHVVPASRGG 202
++ ++ R L+ L RD C YC + R LT DHV+P S+GG
Sbjct: 69 QLHPIIASTGHCREYAIDPAPALTNTALFARDRHLCLYCGAHFNRGGLTRDHVLPVSKGG 128
Query: 203 EWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPK 240
+WEN+V+AC CN RK +T ++A M L VP P
Sbjct: 129 RDEWENVVSACLACNLRKSNRTPQQAQMPLLAVPYRPS 166
>gi|389774099|ref|ZP_10192280.1| restriction endonuclease [Rhodanobacter spathiphylli B39]
gi|388438717|gb|EIL95457.1| restriction endonuclease [Rhodanobacter spathiphylli B39]
Length = 201
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 75/152 (49%), Gaps = 12/152 (7%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGS---FYIPAVLRVRHL 155
R L LD + R ++ + W+ A+CL ++ A D + G ++L++ +
Sbjct: 15 RVLSLDAAGRILDWISWQEAVCL-YVRDAVAWTLGDPCLTVHGGHNRLLGAQSLLQLHPI 73
Query: 156 LQVVKRRR-----IKNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWE 207
+ R R L+ L RD C YC SR LT DHV+P SR G+ +WE
Sbjct: 74 IASTGRCREHAIDPAPALTNTALFARDRHICLYCGEHFSRAELTRDHVMPISRQGKDEWE 133
Query: 208 NLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
N+V+AC CN +K +T ++ANM L VP P
Sbjct: 134 NVVSACLACNLKKSNRTPQQANMPLLAVPYRP 165
>gi|302870234|ref|YP_003838871.1| HNH endonuclease [Micromonospora aurantiaca ATCC 27029]
gi|302573093|gb|ADL49295.1| HNH endonuclease [Micromonospora aurantiaca ATCC 27029]
Length = 146
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 70/140 (50%), Gaps = 6/140 (4%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYY-DQTINSPNGSFYIPAVLRVRHLLQVV 159
LV++ P++ V K AI + A++ E D+ I G F +P V+R+ +
Sbjct: 5 LVVNADLGPLHRVTVKHAIRMLCRRVAEIHEAEPDRVI----GVFPLPRVVRLVRYVVTR 60
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R SR ++ RD C YC + TIDH++P SRGG W N AAC+ CN R
Sbjct: 61 WRFSAGPAWSRAGMLARDRRKCAYCDGAAS-TIDHILPRSRGGRNTWGNTTAACYACNQR 119
Query: 220 KGKKTLEEANMQLSRVPKAP 239
KG +T EA M L R P P
Sbjct: 120 KGDRTPAEAGMPLRREPVTP 139
>gi|254482973|ref|ZP_05096209.1| HNH endonuclease domain protein [marine gamma proteobacterium
HTCC2148]
gi|214036845|gb|EEB77516.1| HNH endonuclease domain protein [marine gamma proteobacterium
HTCC2148]
Length = 175
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 168 LSRKNLMYRDNFTCQYCSSREN---LTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
L + L RD+ C YC + N LT DHV P SRGG +WEN+VAAC +CN +K KT
Sbjct: 68 LCNRTLFRRDDHRCLYCGQQHNRGELTRDHVRPTSRGGLDRWENVVAACRRCNWQKDDKT 127
Query: 225 LEEANMQLSRVPKAPKDYD 243
EEA+M L VP P Y+
Sbjct: 128 PEEASMPLLAVPFRPNPYE 146
>gi|389799047|ref|ZP_10202052.1| restriction endonuclease [Rhodanobacter sp. 116-2]
gi|388443868|gb|EIM00002.1| restriction endonuclease [Rhodanobacter sp. 116-2]
Length = 203
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 78/157 (49%), Gaps = 12/157 (7%)
Query: 94 ELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYI---PAVL 150
+L R L LD + R ++ + W+ A+CL ++ A D + G + ++L
Sbjct: 10 DLHATRVLSLDAAGRILDWISWQEAVCL-YVRDAVAWTLGDPCLTVHGGHNRVLGAQSLL 68
Query: 151 RVRHLLQVVKRRR-----IKNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGG 202
R+ ++ R R L+ L RD C YC +R LT DHV+P S+ G
Sbjct: 69 RLHPIIASTGRCREHAIDPAPALTNTALFARDRHICLYCGEHFTRAELTRDHVLPISKRG 128
Query: 203 EWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
+ +WEN+V+AC CN +K +T +EA+M L VP P
Sbjct: 129 KDEWENVVSACLACNLKKSNRTPQEADMPLLAVPYRP 165
>gi|410639221|ref|ZP_11349774.1| restriction endonuclease [Glaciecola lipolytica E3]
gi|410141749|dbj|GAC16979.1| restriction endonuclease [Glaciecola lipolytica E3]
Length = 185
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 165 KNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
K +L + L RDNF C YC LT DH++P SRGG+ W N AC +CN K
Sbjct: 72 KISLCNRYLFRRDNFLCMYCGQSFKSSQLTRDHIIPRSRGGKDVWTNSATACTRCNCHKA 131
Query: 222 KKTLEEANMQLSRVPKAPKDYD 243
+T EEANM L VP AP Y+
Sbjct: 132 ARTPEEANMSLIAVPFAPNLYE 153
>gi|455644290|gb|EMF23392.1| hypothetical protein H114_28961 [Streptomyces gancidicus BKS 13-15]
Length = 149
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 69/135 (51%), Gaps = 6/135 (4%)
Query: 117 RAICLEFMEKADVLEYYDQTINSPNGSFYIPA--VLRVRHLLQVVKRRRIKNNLSRKNLM 174
R L +KA V+E + + IPA V+R+ ++V RRR SR+ ++
Sbjct: 2 RDTXLVLQDKA-VVEQAHPELRMRGAAVDIPAPRVIRLCQYVRVPFRRRAP--WSRRGVL 58
Query: 175 YRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSR 234
RD C YC R T+DHVVP S GG+ W N VA+C + N RK +T E+A M L R
Sbjct: 59 VRDRHRCAYCGRRAT-TVDHVVPRSHGGQDTWLNTVASCAEDNHRKANRTPEQAGMPLLR 117
Query: 235 VPKAPKDYDILAIPL 249
P P D + + L
Sbjct: 118 RPFEPTPADAMLLAL 132
>gi|392951560|ref|ZP_10317115.1| HNH endonuclease [Hydrocarboniphaga effusa AP103]
gi|391860522|gb|EIT71050.1| HNH endonuclease [Hydrocarboniphaga effusa AP103]
Length = 184
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 168 LSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
L+ + L RD C YC + LT DHVVPASRGG WEN V AC +CN +K +T
Sbjct: 79 LTNRTLFQRDRNLCLYCGMQFAHSALTRDHVVPASRGGGTIWENCVTACARCNHKKADRT 138
Query: 225 LEEANMQLSRVPKAP--KDYDILA 246
EEA M+L VP P +Y IL+
Sbjct: 139 PEEAGMKLLAVPYTPNLAEYLILS 162
>gi|218665243|ref|YP_002425624.1| HNH endonuclease domain-containing protein [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|218517456|gb|ACK78042.1| HNH endonuclease domain protein [Acidithiobacillus ferrooxidans
ATCC 23270]
Length = 181
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 168 LSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
L+ L RD C YC +LT DH++P S+GG+ W N+VAAC +CNS KG T
Sbjct: 77 LTNAALFRRDGHLCMYCGRPFKDRDLTRDHIIPTSKGGKDIWTNVVAACKRCNSHKGAMT 136
Query: 225 LEEANMQLSRVPKAPKDYDILAI 247
E++ M+L VP P Y+ L +
Sbjct: 137 PEQSGMKLIAVPYTPNQYEFLYL 159
>gi|352090571|ref|ZP_08954604.1| HNH endonuclease [Rhodanobacter sp. 2APBS1]
gi|351676084|gb|EHA59239.1| HNH endonuclease [Rhodanobacter sp. 2APBS1]
Length = 203
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 77/157 (49%), Gaps = 12/157 (7%)
Query: 94 ELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYI---PAVL 150
+L R L LD + R ++ + W+ A+CL ++ A D + G + ++L
Sbjct: 10 DLHATRVLSLDAAGRILDWISWQEAVCL-YVRDAVAWTLGDPCLTVHGGHNRVLGAQSLL 68
Query: 151 RVRHLLQVVKRRR-----IKNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGG 202
R+ ++ R R L+ L RD C YC +R LT DHV+P S+ G
Sbjct: 69 RLHPIIASTGRCREHAIDPAPALTNTALFARDRHICLYCGEHFTRAELTRDHVLPISKRG 128
Query: 203 EWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
+WEN+V+AC CN +K +T +EA+M L VP P
Sbjct: 129 RDEWENVVSACLACNLKKSNRTPQEADMPLLAVPYRP 165
>gi|334336388|ref|YP_004541540.1| HNH endonuclease [Isoptericola variabilis 225]
gi|334106756|gb|AEG43646.1| HNH endonuclease [Isoptericola variabilis 225]
Length = 159
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 69/140 (49%), Gaps = 5/140 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLR-VRHLLQVV 159
LVL+ Y P++ V K AI + E A V E G + +P VLR VR++
Sbjct: 5 LVLNAGYEPLHRVSVKHAITMLVREVAVVEE---AVEGHSFGPYPLPRVLRLVRYVAMRW 61
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
+ R K+ + R + C YC T+DHVVP SRGG+ W NLVAAC CN R
Sbjct: 62 RYRSAGQPACTKDGVKRRDRMCAYCGGPAQ-TVDHVVPRSRGGDSSWLNLVAACEPCNHR 120
Query: 220 KGKKTLEEANMQLSRVPKAP 239
K +T EA M L P P
Sbjct: 121 KADRTPAEAGMPLLVTPYVP 140
>gi|315503488|ref|YP_004082375.1| hnh endonuclease [Micromonospora sp. L5]
gi|315410107|gb|ADU08224.1| HNH endonuclease [Micromonospora sp. L5]
Length = 146
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 70/140 (50%), Gaps = 6/140 (4%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYY-DQTINSPNGSFYIPAVLRVRHLLQVV 159
LV++ P++ V K AI + A++ E D+ I G F +P V+R+ +
Sbjct: 5 LVVNADLGPLHRVTVKHAIRMLCRRVAEIHEAEPDRVI----GVFPLPRVVRLVRYVVTR 60
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R SR ++ RD C YC + TIDH++P SRGG W N AAC+ CN R
Sbjct: 61 WRFSAGPAWSRAGVLARDRRKCAYCDGAAS-TIDHILPRSRGGRNTWGNTTAACYACNQR 119
Query: 220 KGKKTLEEANMQLSRVPKAP 239
KG +T EA M L R P P
Sbjct: 120 KGDRTPAEAGMPLRREPVTP 139
>gi|398806963|ref|ZP_10565858.1| restriction endonuclease [Polaromonas sp. CF318]
gi|398086797|gb|EJL77405.1| restriction endonuclease [Polaromonas sp. CF318]
Length = 186
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 168 LSRKNLMYRDNFTCQYCSS---RENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+++ L+ RD TC YC+ ++L +H+VPAS+GG + W NLV+AC CN RK +T
Sbjct: 80 VTKPKLLRRDRCTCAYCAQVFPEKDLEAEHIVPASKGGPYAWTNLVSACRHCNGRKKDRT 139
Query: 225 LEEANMQLSRVPKAPKDYD 243
E+A M L +P P Y+
Sbjct: 140 PEQAGMPLVYLPYVPSRYE 158
>gi|389805986|ref|ZP_10203129.1| restriction endonuclease [Rhodanobacter thiooxydans LCS2]
gi|388446440|gb|EIM02473.1| restriction endonuclease [Rhodanobacter thiooxydans LCS2]
Length = 201
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 12/157 (7%)
Query: 94 ELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGS---FYIPAVL 150
+L R L LD + R ++ + W+ A+CL ++ A D + G ++L
Sbjct: 10 DLHATRVLSLDAAGRILDWISWQEAVCL-YVRDAVAWTLGDPCLTVHGGHNRLLGAQSLL 68
Query: 151 RVRHLLQVVKRRR-----IKNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGG 202
R+ ++ R L+ L RD C YC +R LT DHV+P S+ G
Sbjct: 69 RLHPIIASTGHCREHAIDPAPALTNTALFARDRHICLYCGDHFTRAELTRDHVLPISKRG 128
Query: 203 EWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAP 239
+ +WEN+V+AC CN +K +T +EANM L VP P
Sbjct: 129 KDEWENVVSACLACNLKKSNRTPQEANMPLLAVPYRP 165
>gi|395007292|ref|ZP_10391051.1| restriction endonuclease [Acidovorax sp. CF316]
gi|394314681|gb|EJE51552.1| restriction endonuclease [Acidovorax sp. CF316]
Length = 202
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 167 NLSRKNLMYRDNFTCQYCSS---RENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKK 223
L+++ L+ RD TC YC E L +H+VP SRGG W NLVAAC CN K +
Sbjct: 95 GLTKRRLLRRDRHTCAYCGGVFGEEVLQCEHIVPQSRGGATSWTNLVAACAGCNGYKADR 154
Query: 224 TLEEANMQLSRVPKAPKDYD 243
EEA M+L +P P Y+
Sbjct: 155 LPEEAGMRLLYLPYVPSRYE 174
>gi|332141238|ref|YP_004426976.1| restriction endonuclease [Alteromonas macleodii str. 'Deep
ecotype']
gi|327551260|gb|AEA97978.1| restriction endonuclease [Alteromonas macleodii str. 'Deep
ecotype']
Length = 184
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 165 KNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
K L+ + L RD++ C YC + + LT DH++P SRGG+ W N+ AC +CN KG
Sbjct: 72 KVALTNRYLFRRDSYLCMYCGQTFTPKQLTRDHIIPRSRGGKDVWTNVATACQRCNHAKG 131
Query: 222 KKTLEEANMQLSRVPKAPKDYD 243
KT EEANM L VP P Y+
Sbjct: 132 AKTPEEANMPLLAVPFRPNVYE 153
>gi|443294486|ref|ZP_21033580.1| HNH endonuclease [Micromonospora lupini str. Lupac 08]
gi|385882334|emb|CCH21731.1| HNH endonuclease [Micromonospora lupini str. Lupac 08]
Length = 147
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 70/140 (50%), Gaps = 6/140 (4%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYY-DQTINSPNGSFYIPAVLRVRHLLQVV 159
LV++ P++ V + A+ + A++ E DQ I G F +P V+R+ +
Sbjct: 5 LVVNADLGPLHRVTVQHAVRMLCRRVAEIHEAEPDQVI----GVFPLPRVVRLVRYVVTR 60
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R SR ++ RD C YC + TIDH++P SRGG W N AAC+ CN R
Sbjct: 61 WRFNSGPAWSRAGVLRRDERCCAYCGGAAS-TIDHILPRSRGGRNTWRNTTAACYGCNQR 119
Query: 220 KGKKTLEEANMQLSRVPKAP 239
KG +T EA M L R P P
Sbjct: 120 KGDRTPAEAGMPLRREPVNP 139
>gi|410861615|ref|YP_006976849.1| restriction endonuclease [Alteromonas macleodii AltDE1]
gi|410818877|gb|AFV85494.1| restriction endonuclease [Alteromonas macleodii AltDE1]
Length = 184
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 165 KNNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
K L+ + L RD++ C YC + + LT DH++P SRGG+ W N+ AC +CN KG
Sbjct: 72 KVALTNRYLFRRDSYLCMYCGQTFTPKQLTRDHIIPRSRGGKDVWTNVATACQRCNHAKG 131
Query: 222 KKTLEEANMQLSRVPKAPKDYD 243
KT EEANM L VP P Y+
Sbjct: 132 AKTPEEANMPLLAVPFRPNVYE 153
>gi|344338624|ref|ZP_08769555.1| HNH endonuclease [Thiocapsa marina 5811]
gi|343801206|gb|EGV19149.1| HNH endonuclease [Thiocapsa marina 5811]
Length = 209
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 168 LSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
LS + L +RD+ C YC SR +L+ DHV P SRGG+ W N+V AC +CN+ K +T
Sbjct: 86 LSNRTLFHRDDHMCMYCGSRFSGRHLSRDHVRPTSRGGKDVWNNVVTACVRCNNFKAGRT 145
Query: 225 LEEANMQLSRVPKAP 239
E A M+L VP P
Sbjct: 146 PEAAGMELLAVPFTP 160
>gi|335419894|ref|ZP_08550938.1| HNH endonuclease [Salinisphaera shabanensis E1L3A]
gi|334895784|gb|EGM33949.1| HNH endonuclease [Salinisphaera shabanensis E1L3A]
Length = 191
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 79/161 (49%), Gaps = 14/161 (8%)
Query: 99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNG---SFYIPAVLRVRHL 155
R L LD PV V W+ A+ L F +K E + I G S + + + + +
Sbjct: 7 RILKLDAGGLPVEWVDWREAVSLYFTDKI-AWEAGSEKICLRGGRSRSTGLRSQIEIDSI 65
Query: 156 LQVVKR-----RRIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWE 207
+ V R R + L+R+ L +RD C YC +R + I+HV+P S+GGE W
Sbjct: 66 IAVRDRSHRFARNLVPALTRRELFHRDGGLCLYCGTRLSFSQMQIEHVMPRSKGGEHAWT 125
Query: 208 NLVAACFKCNSRKGKKTLEEANMQLSRVPKAP--KDYDILA 246
N+V+ C CN K +T E+A M L +P P ++ ILA
Sbjct: 126 NVVSTCEGCNRFKDDRTPEQAGMTLLALPYEPNLAEWLILA 166
>gi|302526329|ref|ZP_07278671.1| endonuclease [Streptomyces sp. AA4]
gi|302435224|gb|EFL07040.1| endonuclease [Streptomyces sp. AA4]
Length = 171
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 72/146 (49%), Gaps = 12/146 (8%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPN-GSFYIPAVLRVRHLLQVV 159
LVL+ Y P++ V AI + + A V E + P+ G F P V+R+ + +
Sbjct: 20 LVLNAGYEPLHTVSLPHAIRMLVRQVAVVHES-----DGPDLGVFPRPKVVRLLRYVVMK 74
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGG-EWKWENLVAACF---- 214
R SR ++ RD TC YC R+ T+DH+ P SRGG W N VAAC
Sbjct: 75 WRYSGPPRWSRSGVLRRDRHTCAYC-GRKATTVDHITPVSRGGARTSWLNTVAACGGSAR 133
Query: 215 KCNSRKGKKTLEEANMQLSRVPKAPK 240
CN+RK +T EA + L P+ P+
Sbjct: 134 SCNARKADRTPAEAGLTLRFPPRVPR 159
>gi|110833749|ref|YP_692608.1| hypothetical protein ABO_0888 [Alcanivorax borkumensis SK2]
gi|110646860|emb|CAL16336.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
Length = 236
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 168 LSRKNLMYRDNFTCQYC--SSREN-LTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
L+ + L RD C YC S EN LT DH+VP SRGG+ +W N+V+AC +CN RKG
Sbjct: 129 LTNRALFRRDKHLCLYCGKSFAENALTRDHIVPTSRGGKDRWLNVVSACRRCNQRKGSHR 188
Query: 225 LEEANMQLSRVPKAPKDYDILAI 247
L+E M+L +P P + LA+
Sbjct: 189 LDEIGMELLALPYVPNMAEYLAL 211
>gi|407699975|ref|YP_006824762.1| restriction endonuclease [Alteromonas macleodii str. 'Black Sea
11']
gi|407249122|gb|AFT78307.1| restriction endonuclease [Alteromonas macleodii str. 'Black Sea
11']
Length = 184
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 165 KNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
K L+ + L RD++ C YC ++ + LT DH++P SRGG+ W N+ AC +CN KG
Sbjct: 72 KVALTNRYLFRRDSYLCMYCGNKFTPKQLTRDHIIPRSRGGKDSWTNVATACQRCNHAKG 131
Query: 222 KKTLEEANMQLSRVPKAPKDYD 243
KT EEA M L VP P Y+
Sbjct: 132 AKTPEEAKMPLLAVPFRPNVYE 153
>gi|407695274|ref|YP_006820062.1| HNH endonuclease domain-containing protein [Alcanivorax dieselolei
B5]
gi|407252612|gb|AFT69719.1| HNH endonuclease domain protein [Alcanivorax dieselolei B5]
Length = 202
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSS---RENLTIDHVVPASRGGEWKWENLVAACFKCN 217
RRR + L+ + L RD C YC LT DH+ P SRGG W N+VAAC +CN
Sbjct: 88 RRRTRPPLTNRALFRRDQHVCLYCGKPFPESQLTRDHIRPTSRGGRDHWLNVVAACRRCN 147
Query: 218 SRKGKKTLEEANMQLSRVPKAPKDYDILAI 247
KG + EE M+L +P P + LA+
Sbjct: 148 QHKGNRLPEEIGMELLALPYVPNMAEYLAL 177
>gi|88810910|ref|ZP_01126166.1| HNH endonuclease domain protein [Nitrococcus mobilis Nb-231]
gi|88791449|gb|EAR22560.1| HNH endonuclease domain protein [Nitrococcus mobilis Nb-231]
Length = 193
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 168 LSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
L+ L RD F C YC R L+ DHV P SRGGE W N+V AC CNS KG +
Sbjct: 71 LNNATLFRRDGFLCMYCGERRRQSELSRDHVRPISRGGEDAWNNVVTACKHCNSHKGNRG 130
Query: 225 LEEANMQLSRVPKAPKDYDILAI 247
E A MQL VP P + + +
Sbjct: 131 PEGAGMQLLAVPFTPTHAEYVYL 153
>gi|238061380|ref|ZP_04606089.1| HNH endonuclease [Micromonospora sp. ATCC 39149]
gi|237883191|gb|EEP72019.1| HNH endonuclease [Micromonospora sp. ATCC 39149]
Length = 178
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 169 SRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEA 228
SR ++ RD+ C YC + TIDHV+P SRGG W N AAC+ CN RKG +T EA
Sbjct: 101 SRAGVLRRDDRCCAYCGGPAS-TIDHVLPRSRGGRNTWRNTTAACYACNQRKGDRTPAEA 159
Query: 229 NMQLSRVPKAP 239
M L P P
Sbjct: 160 GMPLRHEPAVP 170
>gi|255020166|ref|ZP_05292235.1| HNH endonuclease family protein [Acidithiobacillus caldus ATCC
51756]
gi|340783583|ref|YP_004750190.1| HNH endonuclease family protein [Acidithiobacillus caldus SM-1]
gi|254970308|gb|EET27801.1| HNH endonuclease family protein [Acidithiobacillus caldus ATCC
51756]
gi|340557734|gb|AEK59488.1| HNH endonuclease family protein [Acidithiobacillus caldus SM-1]
Length = 184
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 72/157 (45%), Gaps = 12/157 (7%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFY----IPAVLRVRHLL 156
L LD+S RP+ W+ A + +V + +G +P+ L + ++
Sbjct: 5 LRLDVSGRPMAWETWEEAAA--HYVRGNVAWTLGNPFFTAHGGISRLSGLPSSLEIHPVI 62
Query: 157 QVVKRRRIK---NNLSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLV 210
V R K LS L +RD C YC + LT DH++P SR G W N+V
Sbjct: 63 AVRGRHLGKVRPPALSNPTLFHRDRHLCMYCGRHFPQRELTRDHIIPLSRRGRDIWTNVV 122
Query: 211 AACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAI 247
AC CNSRK +T EEA M L VP AP + L +
Sbjct: 123 TACRWCNSRKDNRTPEEAGMPLLAVPFAPTWAEYLLL 159
>gi|288942803|ref|YP_003445043.1| HNH endonuclease [Allochromatium vinosum DSM 180]
gi|288898175|gb|ADC64011.1| HNH endonuclease [Allochromatium vinosum DSM 180]
Length = 201
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 168 LSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
LS + L RD+ C YC R L+ DHV P SRGG+ W N+V AC +CN+ K +T
Sbjct: 86 LSNRTLFQRDDHMCLYCGQRFPARQLSRDHVRPTSRGGQDVWSNVVTACVRCNNHKAGRT 145
Query: 225 LEEANMQLSRVPKAP 239
E+A M+L VP P
Sbjct: 146 PEDAGMELLAVPFTP 160
>gi|83648157|ref|YP_436592.1| restriction endonuclease [Hahella chejuensis KCTC 2396]
gi|83636200|gb|ABC32167.1| Restriction endonuclease [Hahella chejuensis KCTC 2396]
Length = 186
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 168 LSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
L+ K L RD+ TC YC E L+ DH++P SRGG W+N+V AC +CN+ K +T
Sbjct: 78 LTNKYLFRRDDSTCMYCGLTFPYELLSRDHIMPVSRGGRDIWKNVVCACIRCNNFKRDRT 137
Query: 225 LEEANMQLSRVPKAPKDYDILAI 247
EEA M L VP P Y+ L +
Sbjct: 138 PEEAGMPLLAVPFVPSRYEYLYL 160
>gi|374851092|dbj|BAL54062.1| HNH endonuclease domain-containing protein [uncultured gamma
proteobacterium]
Length = 203
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 168 LSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
LS + L RD++ C YC R +L+ DHV P SRGG W N+V AC +CN+ K +T
Sbjct: 90 LSNRTLFRRDDYLCLYCGGRFRHRDLSRDHVTPLSRGGTDTWNNVVTACKRCNNYKAGRT 149
Query: 225 LEEANMQLSRVPKAPKDYDILAI 247
EEA M+L +P P + + +
Sbjct: 150 PEEAGMELIAIPFTPTHAEYIYL 172
>gi|189219234|ref|YP_001939875.1| Restriction endonuclease, McrA/HNH family [Methylacidiphilum
infernorum V4]
gi|189186092|gb|ACD83277.1| Restriction endonuclease, McrA/HNH family [Methylacidiphilum
infernorum V4]
Length = 206
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 65/115 (56%), Gaps = 8/115 (6%)
Query: 121 LEFMEKADVLEYYD--QTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDN 178
L+F E + + Y+ +++ + +P V+ + L + V + +K +R N+ RD
Sbjct: 54 LDFFEWKEHSQEYNGNDVVHTVSFKIRVPKVILLL-LFEKVPMKEVK--FTRHNVFERDG 110
Query: 179 FTCQYCSSREN---LTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANM 230
+ CQYC + L +DHV+P RGG+ WEN+V +C CNS+KG +T +EA M
Sbjct: 111 YVCQYCGEKYETTYLNLDHVIPRERGGKTTWENVVCSCIWCNSKKGNRTPQEAGM 165
>gi|46204717|ref|ZP_00209532.1| COG1403: Restriction endonuclease [Magnetospirillum magnetotacticum
MS-1]
Length = 157
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 65/132 (49%), Gaps = 2/132 (1%)
Query: 113 VCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKN 172
V + AI + + A+VLE + P A++R H V +R+ + SR
Sbjct: 18 VSLRHAIRMLHRQVAEVLEAVEGETFGPYQRPRSVALVRYVHARWVYERQG-RVPYSRAA 76
Query: 173 LMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQL 232
L+ RD + C YC T+DHVVP +GG W N VAAC CN+ KG +T E+A + L
Sbjct: 77 LLRRDRYRCAYCGGTAT-TMDHVVPRCQGGTTTWLNAVAACEPCNAAKGGRTPEQAGLSL 135
Query: 233 SRVPKAPKDYDI 244
P P DI
Sbjct: 136 LSRPFEPAFRDI 147
>gi|171914460|ref|ZP_02929930.1| HNH endonuclease [Verrucomicrobium spinosum DSM 4136]
Length = 193
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 6/111 (5%)
Query: 134 DQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCS---SRENL 190
D + + +G IP VL + +V KRR LS + + RD CQY +R+
Sbjct: 65 DNAVLTVHGPVRIPTVLVLARYDKVPKRR---PKLSSRGIWDRDGGVCQYTGRKLTRDEG 121
Query: 191 TIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKD 241
IDH++P SRGG+ W+N V A + NSRK +T EE ++L R P P++
Sbjct: 122 NIDHIMPRSRGGKTSWDNCVLADKRINSRKADRTPEEVGLKLQRKPGTPRE 172
>gi|196228508|ref|ZP_03127375.1| HNH endonuclease [Chthoniobacter flavus Ellin428]
gi|196227911|gb|EDY22414.1| HNH endonuclease [Chthoniobacter flavus Ellin428]
Length = 200
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 168 LSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
+R N+ RD TCQYC + +L +DHV+P +GG+ WEN+V +C CN++KG +
Sbjct: 93 FTRANIFERDKNTCQYCGKVFDKRDLNLDHVLPRDKGGQTTWENIVCSCIPCNTKKGNRL 152
Query: 225 LEEANMQLSRVPKAPK 240
+A M+L + P PK
Sbjct: 153 PLQAGMRLIKKPVRPK 168
>gi|345873046|ref|ZP_08824967.1| HNH endonuclease [Thiorhodococcus drewsii AZ1]
gi|343917624|gb|EGV28416.1| HNH endonuclease [Thiorhodococcus drewsii AZ1]
Length = 202
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 168 LSRKNLMYRDNFTCQYCSSREN---LTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
LS + L RD+ C YC R + L+ DHV P+S+GGE W NLV AC +CN+ K ++
Sbjct: 87 LSNRTLFQRDDHMCMYCGQRFSPRLLSRDHVRPSSKGGEDHWNNLVTACIRCNNYKAGRS 146
Query: 225 LEEANMQLSRVPKAP 239
E+A M+L VP P
Sbjct: 147 PEDAGMELLAVPFTP 161
>gi|390952005|ref|YP_006415764.1| restriction endonuclease [Thiocystis violascens DSM 198]
gi|390428574|gb|AFL75639.1| restriction endonuclease [Thiocystis violascens DSM 198]
Length = 201
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 168 LSRKNLMYRDNFTCQYCS---SRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
LS + L RDN C YC S +L+ DHV P+S+GG W N+V AC +CN+ K ++
Sbjct: 86 LSNRTLFQRDNHMCMYCGQHFSDRHLSRDHVRPSSKGGADHWNNVVTACVRCNNYKAGRS 145
Query: 225 LEEANMQLSRVPKAP 239
E+A M+L VP AP
Sbjct: 146 PEDAGMELLAVPFAP 160
>gi|254428880|ref|ZP_05042587.1| HNH endonuclease domain protein [Alcanivorax sp. DG881]
gi|196195049|gb|EDX90008.1| HNH endonuclease domain protein [Alcanivorax sp. DG881]
Length = 186
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 168 LSRKNLMYRDNFTCQYCSSR--EN-LTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
L+ + L RD C YC EN LT DH+VP SRGG +W N+V+AC +CN RKG
Sbjct: 79 LTNRALFRRDQHLCLYCGKPFPENVLTRDHIVPTSRGGRDRWLNVVSACRRCNQRKGSHR 138
Query: 225 LEEANMQLSRVPKAPKDYDILAI 247
L+E M+L +P P + LA+
Sbjct: 139 LDEIEMELLALPYVPNMAEYLAL 161
>gi|333893334|ref|YP_004467209.1| restriction endonuclease [Alteromonas sp. SN2]
gi|332993352|gb|AEF03407.1| restriction endonuclease [Alteromonas sp. SN2]
Length = 186
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 165 KNNLSRKNLMYRDNFTCQYCSSREN---LTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
K L+ + L RDN+ C YC R + LT DH++P SRGG+ W N+ +C +CN K
Sbjct: 72 KIALTNRYLFRRDNYLCLYCGQRFSPSLLTRDHIIPRSRGGKDSWTNVATSCQRCNHAKA 131
Query: 222 KKTLEEANMQLSRVPKAPKDYD 243
KT EEA M L VP P Y+
Sbjct: 132 AKTPEEAGMPLLAVPFRPNVYE 153
>gi|407938031|ref|YP_006853672.1| HNH endonuclease [Acidovorax sp. KKS102]
gi|407895825|gb|AFU45034.1| HNH endonuclease [Acidovorax sp. KKS102]
Length = 185
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 164 IKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
+K +L+ L RD C YC R E+LT +H+VP +R G+ W N+V AC CN RK
Sbjct: 74 LKPSLTNSKLFARDRNVCAYCGGRFHEEDLTREHIVPFARNGQDHWMNVVTACRPCNHRK 133
Query: 221 GKKTLEEANMQLSRVPKAPKDYD 243
G +T E+A+M L P P ++
Sbjct: 134 GPRTPEQAHMPLLYAPYVPSLWE 156
>gi|77164763|ref|YP_343288.1| HNH endonuclease [Nitrosococcus oceani ATCC 19707]
gi|254433911|ref|ZP_05047419.1| HNH endonuclease domain protein [Nitrosococcus oceani AFC27]
gi|76883077|gb|ABA57758.1| HNH endonuclease [Nitrosococcus oceani ATCC 19707]
gi|207090244|gb|EDZ67515.1| HNH endonuclease domain protein [Nitrosococcus oceani AFC27]
Length = 189
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 168 LSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
L+ + L +RD +TC YC LT DHVVP +GG+ W N+V AC CN RK +T
Sbjct: 80 LNNRELFHRDRYTCLYCMGTFRDSQLTRDHVVPRCQGGDDSWTNVVTACRSCNQRKDGRT 139
Query: 225 LEEANMQLSRVPKAPKDYDILAI 247
EEA M L VP P + L +
Sbjct: 140 PEEAEMTLLAVPYVPNYAEWLVL 162
>gi|300786130|ref|YP_003766421.1| HNH endonuclease [Amycolatopsis mediterranei U32]
gi|384149445|ref|YP_005532261.1| HNH endonuclease [Amycolatopsis mediterranei S699]
gi|399538013|ref|YP_006550675.1| HNH endonuclease [Amycolatopsis mediterranei S699]
gi|299795644|gb|ADJ46019.1| HNH endonuclease [Amycolatopsis mediterranei U32]
gi|340527599|gb|AEK42804.1| HNH endonuclease [Amycolatopsis mediterranei S699]
gi|398318783|gb|AFO77730.1| HNH endonuclease [Amycolatopsis mediterranei S699]
Length = 153
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 69/153 (45%), Gaps = 10/153 (6%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
LVL+ Y P+ V AI M V E ++ G F P ++R+ + +
Sbjct: 4 LVLNAGYEPLQTVSVPHAI---RMLVRHVAEIHEAEEGLAYGLFPRPKIVRLLRYVVMKW 60
Query: 161 RRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGG-EWKWENLVAACF----K 215
R SR+ ++ RD C YC R TIDHV P SRGG W N VAAC
Sbjct: 61 RYTQPPRWSRRGVLVRDGHRCAYCGQRAT-TIDHVTPLSRGGARTDWLNTVAACGGTARS 119
Query: 216 CNSRKGKKTLEEANMQLSRVPKAPKDYDILAIP 248
CN+RK K EA M+L P P +D L P
Sbjct: 120 CNARKADKLPGEAGMKLRFTPYVPA-WDQLHRP 151
>gi|198282485|ref|YP_002218806.1| HNH endonuclease [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218666495|ref|YP_002424675.1| HNH endonuclease domain-containing protein [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|198247006|gb|ACH82599.1| HNH endonuclease [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218518708|gb|ACK79294.1| HNH endonuclease domain protein [Acidithiobacillus ferrooxidans
ATCC 23270]
Length = 184
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 168 LSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
LS + L +RD+ C YC LT DH++P SR G W N+V AC CNSRK +T
Sbjct: 77 LSNQTLFHRDHHLCMYCGKHFPLRELTRDHIIPISRKGRDIWTNVVTACRSCNSRKDNRT 136
Query: 225 LEEANMQLSRVPKAP 239
EEA+M L VP P
Sbjct: 137 PEEAHMPLLAVPFTP 151
>gi|18640536|ref|NP_570377.1| hypothetical protein P60_67 [Synechococcus phage P60]
Length = 92
Score = 70.9 bits (172), Expect = 7e-10, Method: Composition-based stats.
Identities = 32/65 (49%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 170 RKNLMYRDNFTCQYCSSRENLTIDHVVPASRGG-EWKWENLVAACFKCNSRKGKKTLEEA 228
R N+M RD +TC YC S++NLT+DH+VP +GG W N+ AC +CN KG +L E
Sbjct: 24 RDNIMARDGYTCTYCGSKDNLTLDHIVPRCKGGARWDASNVTTACRRCNQDKGSMSLAE- 82
Query: 229 NMQLS 233
QLS
Sbjct: 83 -FQLS 86
>gi|347818332|ref|ZP_08871766.1| HNH endonuclease [Verminephrobacter aporrectodeae subsp.
tuberculatae At4]
Length = 185
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 164 IKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220
+K L+ L RD C YC ENLT +H+VP +R G+ W N+V AC CN RK
Sbjct: 74 LKPGLTNGKLFVRDRNVCAYCGGHFHEENLTREHIVPFARNGQDHWMNVVTACRPCNHRK 133
Query: 221 GKKTLEEANMQLSRVPKAPKDYD 243
G +T E+A+M L P P ++
Sbjct: 134 GPRTPEQAHMPLLYAPYVPSLWE 156
>gi|375103884|ref|ZP_09750145.1| restriction endonuclease [Burkholderiales bacterium JOSHI_001]
gi|374664615|gb|EHR69400.1| restriction endonuclease [Burkholderiales bacterium JOSHI_001]
Length = 213
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 163 RIKNNLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
R+ L+ L RD C YC R + LT +H+VP SRGG W N + AC CN R
Sbjct: 101 RVAPALTNPKLFVRDRHICAYCGGRFGFDTLTREHIVPTSRGGRDTWMNCITACRHCNGR 160
Query: 220 KGKKTLEEANMQLSRVPKAPKDYD 243
KG + +EA M L P P ++
Sbjct: 161 KGNRLPDEARMTLMYTPYVPSLHE 184
>gi|344343222|ref|ZP_08774091.1| HNH endonuclease [Marichromatium purpuratum 984]
gi|343805153|gb|EGV23050.1| HNH endonuclease [Marichromatium purpuratum 984]
Length = 186
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 168 LSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
LS + L RD+ C YC R +L+ DHV P S+GGE W N+V AC +CN+ K ++
Sbjct: 71 LSNRTLFQRDDHICLYCGQRFSTRHLSRDHVRPTSKGGEDHWNNVVTACMRCNNIKAGRS 130
Query: 225 LEEANMQLSRVPKAPKDYDILAI 247
E+A M+L VP P + + +
Sbjct: 131 PEDAGMELLAVPFTPNHAEYIYL 153
>gi|294811854|ref|ZP_06770497.1| endonuclease [Streptomyces clavuligerus ATCC 27064]
gi|294324453|gb|EFG06096.1| endonuclease, partial [Streptomyces clavuligerus ATCC 27064]
Length = 128
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT-INSPNGSFYIPAVLRVRHLLQVV 159
LVL+ S+ P++ V RA+ L +KA V + + + + +P V+R+ ++V
Sbjct: 8 LVLNASFEPLSTVSLHRAVILVLQDKAVVEQAHPGLRMRAAAVDLPVPQVIRLCRYVRVP 67
Query: 160 KRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
RR + SR+ ++ RD C YC R T+DHVVP S GG W N VA+C + N R
Sbjct: 68 FRR--QAPWSRRGVLARDQHRCAYCGRRAT-TVDHVVPRSHGGADSWLNTVASCAEDNHR 124
Query: 220 KGKK 223
K +
Sbjct: 125 KADR 128
>gi|224015326|ref|XP_002297320.1| endonuclease [Thalassiosira pseudonana CCMP1335]
gi|220968033|gb|EED86391.1| endonuclease [Thalassiosira pseudonana CCMP1335]
Length = 175
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 9/107 (8%)
Query: 146 IPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSS---RENLTIDHVVPASRGG 202
+P+V+ ++ K R +R+N+ RD + CQYCS +L++DHV P GG
Sbjct: 54 VPSVIALKEYAHTGKAR---PAFTRRNVFLRDGYRCQYCSGLFRTSDLSLDHVEPRCFGG 110
Query: 203 EWKWENLVAACFKCNSRKG---KKTLEEANMQLSRVPKAPKDYDILA 246
+ WEN V +C KCN RKG + M L P+ P Y++ A
Sbjct: 111 KLTWENTVTSCRKCNGRKGCLRPTEIHHIGMTLKSKPRCPSLYELAA 157
>gi|412992973|emb|CCO16506.1| HNH endonuclease [Bathycoccus prasinos]
Length = 222
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 168 LSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
L R+N+ RD+ C YC R ++LTIDH++P S+GGE W NL AC CN RKG +
Sbjct: 144 LKRENVFIRDHHVCTYCGRRYASDDLTIDHILPRSKGGERSWTNLTTACATCNKRKGNEL 203
Query: 225 LEEANMQLS 233
L++ ++ +
Sbjct: 204 LKQEEIRTA 212
>gi|113478219|ref|YP_724280.1| HNH endonuclease domain-containing protein [Trichodesmium
erythraeum IMS101]
gi|110169267|gb|ABG53807.1| HNH endonuclease domain protein [Trichodesmium erythraeum IMS101]
Length = 165
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 76/142 (53%), Gaps = 5/142 (3%)
Query: 101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT---INSPNGSFYIPAVLRVRHLLQ 157
++ +Y P+ + KRAI + A+ L++ + + + S + Y+ + +R + Q
Sbjct: 11 VIFSQNYLPITRINIKRAIAMWVSSIAESLDFNNGSCWPLRSTSLVLYMSQQITLRMISQ 70
Query: 158 VVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCN 217
KR + +K ++ RD+ CQYC S + L +D+++ +S+ + WE +V AC KCN
Sbjct: 71 --KRLWKVPPMKQKEVLKRDHHCCQYCGSTKRLILDNLIRSSKDRKHIWEYVVTACEKCN 128
Query: 218 SRKGKKTLEEANMQLSRVPKAP 239
KG TL EA M+L PK P
Sbjct: 129 VFKGSHTLIEAEMKLLHQPKIP 150
>gi|171909960|ref|ZP_02925430.1| HNH endonuclease [Verrucomicrobium spinosum DSM 4136]
Length = 194
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 16/143 (11%)
Query: 134 DQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCS---SRENL 190
DQ++ + +G +P V+ +V R + + + + RD CQY +R
Sbjct: 65 DQSVKTTHGPVRVPTVVVAARYDKVPLHR---PSFTARGIWERDGGVCQYTGRKLARNEG 121
Query: 191 TIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLT 250
IDHVVP SRGG WEN V A K N+RK + +EA ++L R P PK A+P+T
Sbjct: 122 NIDHVVPRSRGGASSWENCVLADRKINTRKADRLPQEAGLRLQRPPVTPK-----AVPVT 176
Query: 251 SAAIRMLRVRKGTPVEWRQYLPQ 273
+ VR +W+ +L Q
Sbjct: 177 LLIRNVHDVR-----DWKHFLRQ 194
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,485,728,703
Number of Sequences: 23463169
Number of extensions: 185455227
Number of successful extensions: 389428
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1593
Number of HSP's successfully gapped in prelim test: 726
Number of HSP's that attempted gapping in prelim test: 385840
Number of HSP's gapped (non-prelim): 2367
length of query: 278
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 138
effective length of database: 9,074,351,707
effective search space: 1252260535566
effective search space used: 1252260535566
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.9 bits)