BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023698
         (278 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8TRT5|RS4E_METAC 30S ribosomal protein S4e OS=Methanosarcina acetivorans (strain
           ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rps4e PE=3
           SV=1
          Length = 235

 Score = 35.0 bits (79), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 9/53 (16%)

Query: 217 NSRKGKKTLEEANMQLSRVPKAPKD-------YDILAIPLTSAAIRMLRVRKG 262
           NSR+GK+ L E  + +  +P+  KD       +D++ +PL + A RML+  KG
Sbjct: 52  NSREGKRILSEGKVLVDGIPR--KDLRFPVGLFDVITLPLVNEAYRMLQDEKG 102


>sp|Q5I137|PTPJ4_MDBVW Probable tyrosine phosphatase protein J4 OS=Microplitis demolitor
           bracovirus (isolate Webb) GN=J5 PE=3 SV=1
          Length = 299

 Score = 33.5 bits (75), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 5/108 (4%)

Query: 47  LIRPRNGVWSSMNKKKSSKFSVDASLNVSGKGISGESEEYDSDEEFDELACFRGLVLDIS 106
           L  P+N     +N+K  S F      NV  K +   S   DS  +F  +A  + + + + 
Sbjct: 68  LCLPKN-----VNQKTDSAFCSVDGYNVKNKFLCTRSPNQDSLYQFWSMAYKKNIHIIVM 122

Query: 107 YRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRH 154
             P++ +   R   LE  E  +  E+  +T+     +FYI   L+++H
Sbjct: 123 LSPIDNLMRHRYWSLEEDEVFECREFRIETLQVDVQAFYITTTLQLKH 170


>sp|Q87HS0|DDL_VIBPA D-alanine--D-alanine ligase OS=Vibrio parahaemolyticus serotype
           O3:K6 (strain RIMD 2210633) GN=ddl PE=3 SV=1
          Length = 329

 Score = 32.7 bits (73), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 154 HLLQVVK--RRRIKNN---LSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRG 201
           +L+Q VK  R  IKN      +  L+Y D  T Q CS+  N TID +VP   G
Sbjct: 31  NLIQNVKVTRVEIKNEGWVTDQGELVYLDLNTKQLCSNESNQTIDFIVPCIHG 83


>sp|P24200|MCRA_ECOLI 5-methylcytosine-specific restriction enzyme A OS=Escherichia coli
           (strain K12) GN=mcrA PE=4 SV=2
          Length = 277

 Score = 32.3 bits (72), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 190 LTIDHVVPASRGGEWKWENLVAACFKCN-----SRKGKKTLEEANMQLSRVPK 237
           L + HV+P S GG    +N VA C  C+     S+  K+ +E   + ++R+ K
Sbjct: 225 LEVHHVIPLSSGGADTTDNCVALCPNCHRELHYSKNAKELIEMLYVNINRLQK 277


>sp|Q46GA7|RS4E_METBF 30S ribosomal protein S4e OS=Methanosarcina barkeri (strain Fusaro
           / DSM 804) GN=rps4e PE=3 SV=1
          Length = 235

 Score = 32.0 bits (71), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 9/53 (16%)

Query: 217 NSRKGKKTLEEANMQLSRVPKAPKD-------YDILAIPLTSAAIRMLRVRKG 262
           NSR+GK+ L E  + +  +P+  KD       +D++ +PL +   RM +  KG
Sbjct: 52  NSREGKRILSEGKVLVDGIPR--KDLRFPVGLFDVITLPLVNETYRMFQDEKG 102


>sp|Q86L54|Y2829_DICDI TNF receptor-associated factor family protein DDB_G0272829
           OS=Dictyostelium discoideum GN=DDB_G0272829 PE=3 SV=1
          Length = 530

 Score = 31.6 bits (70), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 156 LQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFK 215
           L ++K   I+NNL  K + + DNF CQ C   E L I  ++P +R    +  N    C  
Sbjct: 12  LIIIKNESIENNL--KEISFSDNFKCQIC---EGLLISSLIP-NRMKALQCINGHCFCLT 65

Query: 216 C 216
           C
Sbjct: 66  C 66


>sp|Q96MH2|HEXI2_HUMAN Protein HEXIM2 OS=Homo sapiens GN=HEXIM2 PE=1 SV=1
          Length = 286

 Score = 31.2 bits (69), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 30/64 (46%)

Query: 26  RDPFQYKLGSGLRSIEVHKRKLIRPRNGVWSSMNKKKSSKFSVDASLNVSGKGISGESEE 85
           RD  Q +  S +R     K + + P N     MN +   + ++D    +S  G SGESE 
Sbjct: 116 RDERQSQRASRVREEMFAKGQPVAPYNTTQFLMNDRDPEEPNLDVPHGISHPGSSGESEA 175

Query: 86  YDSD 89
            DSD
Sbjct: 176 GDSD 179


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.135    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,530,577
Number of Sequences: 539616
Number of extensions: 4464868
Number of successful extensions: 9600
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 9593
Number of HSP's gapped (non-prelim): 13
length of query: 278
length of database: 191,569,459
effective HSP length: 116
effective length of query: 162
effective length of database: 128,974,003
effective search space: 20893788486
effective search space used: 20893788486
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)