Query 023698
Match_columns 278
No_of_seqs 247 out of 1332
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 11:17:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023698.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023698hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qgp_A HNH endonuclease; Q39X4 99.5 8.5E-16 2.9E-20 124.2 -1.5 58 174-231 31-91 (112)
2 3m7k_A Restriction endonucleas 95.0 0.0039 1.3E-07 52.3 -0.2 48 176-226 58-122 (142)
3 1e7l_A GP49, recombination end 94.9 0.0083 2.8E-07 51.4 1.5 53 167-222 9-67 (157)
4 1tif_A IF3-N, translation init 68.5 20 0.0007 27.0 7.2 57 94-159 10-66 (78)
5 2jb0_B Colicin E7; hydrolase/i 47.9 3.4 0.00012 34.3 -0.3 34 185-218 91-125 (131)
6 1fr2_B Colicin E9; protein-pro 46.1 3.6 0.00012 34.3 -0.4 34 185-218 94-128 (134)
7 3gox_A Restriction endonucleas 38.8 8.8 0.0003 33.9 0.9 48 166-220 120-178 (200)
8 7cei_B Protein (colicin E7 imm 38.3 5.5 0.00019 35.2 -0.5 35 185-219 166-201 (206)
9 6rxn_A Rubredoxin; electron tr 18.0 23 0.00077 24.1 -0.3 38 177-222 3-42 (46)
10 3kpb_A Uncharacterized protein 17.7 1.1E+02 0.0038 21.9 3.5 33 93-125 89-121 (122)
No 1
>2qgp_A HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 2.60A {Geobacter metallireducens gs-15}
Probab=99.50 E-value=8.5e-16 Score=124.18 Aligned_cols=58 Identities=38% Similarity=0.571 Sum_probs=52.8
Q ss_pred HHHCCCccccCCCC---CCCccceeeecCCCCCCchhhHHHhchhhhcCcCCCCHHHHhcc
Q 023698 174 MYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQ 231 (278)
Q Consensus 174 l~RD~~~C~YCG~~---~~ltvDHIiP~S~GG~~tweNLv~aC~~CN~~Kg~rtpeeagm~ 231 (278)
+.|++++|+|||.. ..+++|||+|++.||.++|+||+++|..||..|++++++++.-.
T Consensus 31 l~r~~~~C~yCg~~~~~~~~~vDHIiP~s~gG~~~~~Nl~~lC~~CN~~K~~~~~~e~~~~ 91 (112)
T 2qgp_A 31 NRIARGICHYCGEIFPPEELTMDHLVPVVRGGKSTRGNVVPACKECNNRKKYLLPVEWEEY 91 (112)
T ss_dssp HHHHHTBCTTTCCBCCGGGEEEEESSCTTTTCCCSTTTEEEEEHHHHHHHHTCCSHHHHHH
T ss_pred HHHcCCcCCCCCCcCCCCCcEEEEEeehhcCCCCChhhChhhCHHHHHHHccCCHHHHHHH
Confidence 67899999999987 35899999999999999999999999999999999999887433
No 2
>3m7k_A Restriction endonuclease PACI; HNH restriction endonuclease, beta-BETA-alpha-metal active S base-PAIR RARE cutter; HET: DNA; 1.92A {Pseudomonas alcaligenes} PDB: 3ldy_A*
Probab=94.98 E-value=0.0039 Score=52.25 Aligned_cols=48 Identities=27% Similarity=0.432 Sum_probs=34.2
Q ss_pred HCCCccccCCCC-----------------CCCccceeeecCCCCCCchhhHHHhchhhhcCcCCCCHH
Q 023698 176 RDNFTCQYCSSR-----------------ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLE 226 (278)
Q Consensus 176 RD~~~C~YCG~~-----------------~~ltvDHIiP~S~GG~~tweNLv~aC~~CN~~Kg~rtpe 226 (278)
++.-.|-|||.. .-|+||-. .+.- .-+.+||+.||..||+.|++..-.
T Consensus 58 ~q~k~C~YCgite~~~k~L~k~k~Rg~~~~~LeIeR~--~~~~-~Ys~dNLaLAC~~CNnaKsdk~ta 122 (142)
T 3m7k_A 58 SAQRHCGYCGISEAGFTSLHRTNPRGYHIQCLGVDRS--DSFE-GYSPQNARLACFICNRIKSNIFSA 122 (142)
T ss_dssp GGGCBCTTTCCBHHHHHTTTCBCTTSCBCCSCEEEES--STTS-CBCTTTEEEECHHHHHHHTTTSCH
T ss_pred CCCCceeeecccHHHHHHHhhccCCCccccceEEecc--CCcc-ccCHHHHHHHHHHHhccccccccc
Confidence 566799999975 11555542 2222 246899999999999999998744
No 3
>1e7l_A GP49, recombination endonuclease VII; resolvase, holliday junction, DNAse; HET: SO4; 1.32A {Bacteriophage T4} SCOP: a.140.4.1 d.4.1.5 PDB: 2qnc_A* 1en7_A 1e7d_A 2qnf_A*
Probab=94.87 E-value=0.0083 Score=51.39 Aligned_cols=53 Identities=17% Similarity=0.364 Sum_probs=40.4
Q ss_pred HHHHHHHHHHCCCccccCCCC-----CCCccceeeecCCCCCCchhhHH-HhchhhhcCcCC
Q 023698 167 NLSRKNLMYRDNFTCQYCSSR-----ENLTIDHVVPASRGGEWKWENLV-AACFKCNSRKGK 222 (278)
Q Consensus 167 ~~~R~~Vl~RD~~~C~YCG~~-----~~ltvDHIiP~S~GG~~tweNLv-~aC~~CN~~Kg~ 222 (278)
+..+..+++.++++|+.|+.+ ..+.+||--+.. |..+ .++. ++|..||...|.
T Consensus 9 ~~~~~~l~~~Q~g~C~IC~~~l~~~~~~~~vDHdH~~~--g~~t-G~VRGlLC~~CN~~lG~ 67 (157)
T 1e7l_A 9 KEEKQKFYDAQNGKCLICQRELNPDVQANHLDHDHELN--GPKA-GKVRGLLCNLCDAAEGQ 67 (157)
T ss_dssp HHHHHHHHHHTTTBCTTTCCBCCSSGGGSEEEECCCCS--STTT-TBEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcCcccCCccccccccccccCCCCCC--CCCC-CcchhhccHhHhchhcc
Confidence 357889999999999999986 457899988665 2222 3555 799999998543
No 4
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=68.50 E-value=20 Score=26.98 Aligned_cols=57 Identities=14% Similarity=0.157 Sum_probs=43.7
Q ss_pred ccccceEEEEcCCcceeeeeeHHHHHHHHHcCceeEEeecCCeeecCCcceecceEEEEeccchhh
Q 023698 94 ELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVV 159 (278)
Q Consensus 94 ~~~~~~vLvLN~sy~Pl~~vs~qrAv~l~~~gkAevl~~~~~~v~S~s~~~~vPsVIrL~~yv~~p 159 (278)
.+....|.+++..++.+++++.++|+.+.-.-..++|+.. +.. -|.|-++-.|-+..
T Consensus 10 ~Ir~~eVrli~~~Ge~lGv~~~~eAl~~A~e~~LDLVevs------p~a---~PPVCkImDygK~~ 66 (78)
T 1tif_A 10 QIRAREVRLIDQNGDQLGIKSKQEALEIAARRNLDLVLVA------PNA---KPPVCRIMDYGKFR 66 (78)
T ss_dssp GCCCSEEEEECTTSCEEEEEEHHHHHHHHHHTTCEEEEEE------TTS---SSCEEEEECHHHHH
T ss_pred ccCCCEEEEECCCCcCCCcccHHHHHHHHHHcCCCEEEEC------CCC---CCCEEEEecchhHH
Confidence 3456779999999999999999999999877777777742 332 37788888774443
No 5
>2jb0_B Colicin E7; hydrolase/inhibitor, hydrolase/inhibitor complex, zinc, toxin, plasmid, nuclease, hydrolase, antibiotic, H-N-H motif, bacteriocin; 1.91A {Escherichia coli} SCOP: d.4.1.1 PDB: 3fbd_A 2jaz_B 2jbg_B 3gkl_A 3gjn_B 1pt3_A 2ivh_A 1ujz_B 2erh_B
Probab=47.90 E-value=3.4 Score=34.28 Aligned_cols=34 Identities=21% Similarity=0.378 Sum_probs=25.7
Q ss_pred CCCCCCccceeeecCCCCC-CchhhHHHhchhhhc
Q 023698 185 SSRENLTIDHVVPASRGGE-WKWENLVAACFKCNS 218 (278)
Q Consensus 185 G~~~~ltvDHIiP~S~GG~-~tweNLv~aC~~CN~ 218 (278)
|.....+++|+.|.+.||. .+.+||...-..-|.
T Consensus 91 G~r~kfelHH~~~I~~GG~VYdlDNL~i~TPk~Hi 125 (131)
T 2jb0_B 91 GKRTSFELHHEKPISQNGGVYDMDNISVVTPKRHI 125 (131)
T ss_dssp TTBCBCEEEESSCCC--CCSSBGGGEEEECHHHHH
T ss_pred CCeeEEEEEeechhhcCCeeeeeeeEEEcCcchhh
Confidence 4446789999999999998 899999887665554
No 6
>1fr2_B Colicin E9; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: d.4.1.1 PDB: 1bxi_B 1emv_B 1fsj_B 2gyk_B 2gze_B 2gzf_B 2gzg_B 2gzi_B 2gzj_B 2k5x_B 2vlo_B 2wpt_B 2vlp_B 2vln_B 2vlq_B 1v13_A 1v14_A 1v15_A 3u43_B 1znv_B ...
Probab=46.13 E-value=3.6 Score=34.26 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=27.3
Q ss_pred CCCCCCccceeeecCCCCC-CchhhHHHhchhhhc
Q 023698 185 SSRENLTIDHVVPASRGGE-WKWENLVAACFKCNS 218 (278)
Q Consensus 185 G~~~~ltvDHIiP~S~GG~-~tweNLv~aC~~CN~ 218 (278)
|.....+++|+.|.+.||. .+.+||...-..-|.
T Consensus 94 G~r~kfelHH~~~I~~GG~VYdlDNL~i~TPk~Hi 128 (134)
T 1fr2_B 94 GGRKVYELHHDKPISQGGEVYDMDNIRVTTPKRHI 128 (134)
T ss_dssp TTBCBCEEEESSCGGGTCCSSBGGGEEEECHHHHH
T ss_pred CCeeEEEEEecchhhcCCeeeeeecEEEcCccccc
Confidence 3346789999999999998 899999877655443
No 7
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=38.78 E-value=8.8 Score=33.86 Aligned_cols=48 Identities=29% Similarity=0.426 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHCC-----CccccCCCCC------CCccceeeecCCCCCCchhhHHHhchhhhcCc
Q 023698 166 NNLSRKNLMYRDN-----FTCQYCSSRE------NLTIDHVVPASRGGEWKWENLVAACFKCNSRK 220 (278)
Q Consensus 166 ~~~~R~~Vl~RD~-----~~C~YCG~~~------~ltvDHIiP~S~GG~~tweNLv~aC~~CN~~K 220 (278)
....++.+++.++ ++|+.|+.+. .+.+||=-- .|. .. -++|..||..-
T Consensus 120 T~eey~~L~e~Qg~~~~~G~C~ICg~~~~~~~~k~lvVDHDH~---TG~--VR--GlLC~~CN~~L 178 (200)
T 3gox_A 120 SSTEKKKMDEIAPPKGSVFTCPICEKRSIVGVTANLVHDHNHD---TGW--GR--EWICDSCNTGL 178 (200)
T ss_dssp CHHHHHHHHTTCCCTTCEEECTTTCCEEEBTTTBCEEEEECTT---TCC--EE--EEEEHHHHHHH
T ss_pred CHHHHHHHHHHcccCCCCCcCcCCCCCCCcCcccceeeecccC---CCc--Ee--cccchhhcchh
Confidence 4677888999999 9999999872 377887532 222 11 25899999754
No 8
>7cei_B Protein (colicin E7 immunity protein); DNAse, E-group colicins, protein-protein interaction, protei recognition, immune system; 2.30A {Escherichia coli str} SCOP: d.4.1.1
Probab=38.29 E-value=5.5 Score=35.20 Aligned_cols=35 Identities=20% Similarity=0.364 Sum_probs=28.2
Q ss_pred CCCCCCccceeeecCCCCC-CchhhHHHhchhhhcC
Q 023698 185 SSRENLTIDHVVPASRGGE-WKWENLVAACFKCNSR 219 (278)
Q Consensus 185 G~~~~ltvDHIiP~S~GG~-~tweNLv~aC~~CN~~ 219 (278)
|....++++|+.|.+.||. .+.+||+..-..-|..
T Consensus 166 G~R~kfELHH~~~I~~GG~VYDiDNLrI~TPK~Hie 201 (206)
T 7cei_B 166 GKRTSFELHHEKPISQNGGVYDMDNISVVTPKRHID 201 (206)
T ss_dssp TTBCBCEEEESSCSSSSCCSSBTTSEEEECHHHHHH
T ss_pred CCeeeEEeecCcccccCCeeecccceeecChHHHHh
Confidence 4446799999999999998 7999998876665543
No 9
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=18.02 E-value=23 Score=24.12 Aligned_cols=38 Identities=16% Similarity=0.468 Sum_probs=24.5
Q ss_pred CCCccccCCCCCCCccceeeecCCCCCCchhhHHH--hchhhhcCcCC
Q 023698 177 DNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVA--ACFKCNSRKGK 222 (278)
Q Consensus 177 D~~~C~YCG~~~~ltvDHIiP~S~GG~~tweNLv~--aC~~CN~~Kg~ 222 (278)
..+.|..||- |---..|..+.|+.|-- .|..|...|..
T Consensus 3 ~~y~C~vCGy--------vyd~~~Gd~t~f~~lP~dw~CP~Cg~~k~~ 42 (46)
T 6rxn_A 3 QKYVCNVCGY--------EYDPAEHDNVPFDQLPDDWCCPVCGVSKDQ 42 (46)
T ss_dssp CCEEETTTCC--------EECGGGGTTCCGGGSCTTCBCTTTCCBGGG
T ss_pred CEEECCCCCe--------EEeCCcCCCcchhhCCCCCcCcCCCCcHHH
Confidence 3578999993 22223344466777744 89999887754
No 10
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=17.65 E-value=1.1e+02 Score=21.87 Aligned_cols=33 Identities=18% Similarity=-0.084 Sum_probs=25.3
Q ss_pred cccccceEEEEcCCcceeeeeeHHHHHHHHHcC
Q 023698 93 DELACFRGLVLDISYRPVNVVCWKRAICLEFME 125 (278)
Q Consensus 93 ~~~~~~~vLvLN~sy~Pl~~vs~qrAv~l~~~g 125 (278)
.......+.|+|...++++++|.++.+..+..+
T Consensus 89 ~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~~~ 121 (122)
T 3kpb_A 89 SKYNISGVPVVDDYRRVVGIVTSEDISRLFGGK 121 (122)
T ss_dssp HHHTCSEEEEECTTCBEEEEEEHHHHHHHHC--
T ss_pred HHhCCCeEEEECCCCCEEEEEeHHHHHHHhhcC
Confidence 334456788999999999999999998876543
Done!