Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>023700
MASCFRGGSGISSISSLPSLPHRTRLSVLPVKCLSSRQSRDSDSDSDLRTTPSPSSTSGF
SPYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGM
FAYGVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLPFFETEITTSSSPFA
LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSD
AKIEGFPTWVINGQVLSGEQDLSDLAKASGFPEMSQPS

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  023700
        (278 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2128028 - symbol:LTO1 "Lumen Thiol Oxidoreduct...   567  6.1e-55   1


>TAIR|locus:2128028 [details] [associations]
            symbol:LTO1 "Lumen Thiol Oxidoreductase 1" species:3702
            "Arabidopsis thaliana" [GO:0009507 "chloroplast" evidence=ISM;IDA]
            [GO:0003955 "NAD(P)H dehydrogenase (quinone) activity"
            evidence=IDA] [GO:0009536 "plastid" evidence=IDA] [GO:0010207
            "photosystem II assembly" evidence=RCA;IMP] [GO:0000023 "maltose
            metabolic process" evidence=RCA] [GO:0006098 "pentose-phosphate
            shunt" evidence=RCA] [GO:0019252 "starch biosynthetic process"
            evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
            process, mevalonate-independent pathway" evidence=RCA] [GO:0019760
            "glucosinolate metabolic process" evidence=RCA] [GO:0019761
            "glucosinolate biosynthetic process" evidence=RCA] GO:GO:0009507
            EMBL:CP002687 GenomeReviews:CT486007_GR Gene3D:3.40.30.10
            InterPro:IPR012336 SUPFAM:SSF52833 GO:GO:0003955 GO:GO:0010207
            InterPro:IPR012932 Pfam:PF07884 SMART:SM00756 EMBL:AY099728
            EMBL:AY128903 IPI:IPI00540301 RefSeq:NP_567988.1 UniGene:At.43284
            ProteinModelPortal:Q8L540 STRING:Q8L540 PRIDE:Q8L540
            EnsemblPlants:AT4G35760.1 GeneID:829729 KEGG:ath:AT4G35760
            TAIR:At4g35760 HOGENOM:HOG000232446 InParanoid:Q8L540 OMA:YWCPHCH
            PhylomeDB:Q8L540 ProtClustDB:CLSN2689775 Genevestigator:Q8L540
            Uniprot:Q8L540
        Length = 376

 Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
 Identities = 105/178 (58%), Positives = 142/178 (79%)

Query:    94 IGGASCGDVLNSDYAVVFGVPLPFIGMFAYGVEEIQKVLGVQLCIASLVVAALSTSYSSI 153
             + G+SC   L S +       L F+ +    ++EIQ+V+G+Q+C+A +VVA+L+ SYS+ 
Sbjct:   190 LSGSSCLYCLVSAF---LSFSLFFLSVKDVKLQEIQQVVGLQICLAIIVVASLTASYSTA 246

Query:   154 QPLSSSVAEANLPFFETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSE 213
             QP+ S   +  LP+F TEI++SSSP+A++LAKHL++IGAKMYGAFWCSHCLEQK+MFG E
Sbjct:   247 QPIPSRSGDIELPYFRTEISSSSSPYAIALAKHLNSIGAKMYGAFWCSHCLEQKEMFGRE 306

Query:   214 AVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASGF 271
             A K+LNYVECFPDGY+KGTKI KAC+DA IEGFPTW+IN +VLSGE +L++LA+ +GF
Sbjct:   307 AAKELNYVECFPDGYKKGTKILKACADAAIEGFPTWIINDKVLSGEIELAELAEMTGF 364

 Score = 271 (100.5 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
 Identities = 51/105 (48%), Positives = 58/105 (55%)

Query:    25 RLSVLPVKCLXXX----XXXXXXXXXXXXXXXXXXXXXXXXXYGWCAGIGGVGFLETTYL 80
             R   +P+KC                                 Y W  GIGG+G L+T YL
Sbjct:    38 RFPAIPIKCSSSEPENGEDSAPSLSSSSSSSTSEVSTSNSSTYNWYTGIGGIGMLDTAYL 97

Query:    81 SYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGV 125
             +YLK+T SDAFCPIGG +CGDVLNSDYAVVFGVPLP IG   YGV
Sbjct:    98 TYLKVTGSDAFCPIGGGTCGDVLNSDYAVVFGVPLPVIGFVMYGV 142

 Score = 57 (25.1 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
 Identities = 25/83 (30%), Positives = 38/83 (45%)

Query:   131 VLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLPFFETEITTSSSPFAL--------- 181
             V GV L +   V+      Y  +  LS+ + E NLPF    I+ S+  FAL         
Sbjct:   127 VFGVPLPVIGFVM------YGVVTALSAELGEGNLPF---GISKSNGRFALFGITTAMAS 177

Query:   182 SLAKHLHAIGAKMYGAFWCSHCL 204
             + A  L+ +  K+ G+  C +CL
Sbjct:   178 ASAYFLYILSTKLSGSS-CLYCL 199


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.135   0.418    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      278       236   0.00089  113 3  11 22  0.39    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  178 KB (2103 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.36u 0.11s 19.47t   Elapsed:  00:00:01
  Total cpu time:  19.36u 0.11s 19.47t   Elapsed:  00:00:01
  Start:  Mon May 20 23:49:10 2013   End:  Mon May 20 23:49:11 2013

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