BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023700
(278 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KP9|A Chain A, Structure Of A Bacterial Homolog Of Vitamin K Epoxide
Reductase
Length = 291
Score = 111 bits (277), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 86/257 (33%), Positives = 122/257 (47%), Gaps = 57/257 (22%)
Query: 69 IGGVGFLETTYLSYLKLTNSDA-FCPIGGASCGDVLNSDYAVVFGVP------LPFIGMF 121
+ G+G L T YL+Y KLT A FC G S VL+S +A G+P L F+G+
Sbjct: 26 LAGLGSLLTAYLTYTKLTEQPAAFCTGDGGS-DLVLSSRWAEFLGIPTAAVGLLGFLGVL 84
Query: 122 AYGVEE-----------------IQKVLGVQLCIASLVVAAL-------STSYSSIQPLS 157
A V + + ++ + L+VA L +T+ + L
Sbjct: 85 ALAVLPDGLPLVKRWRWPALFGLVSAMTAFEMYMLYLMVAVLRQFCMYCTTAIILVAGLG 144
Query: 158 SSVAEAN-------------LPFFETEITT---------SSSPFALSLAKHLHAIGAKMY 195
+ L F T +TT SP A+ LA HL IG MY
Sbjct: 145 LVTVLGHRWLDGGKLAFSYILVAFLTLVTTIGVYANQVPPPSPLAVGLAAHLRQIGGTMY 204
Query: 196 GAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV 255
GA+WC HC +QK++FG+ A Q+ YVEC P+G GT A+ C++A I +PTW+ING+
Sbjct: 205 GAYWCPHCQDQKELFGA-AFDQVPYVECSPNG--PGTPQAQECTEAGITSYPTWIINGRT 261
Query: 256 LSGEQDLSDLAKASGFP 272
+G + L LA ASG+P
Sbjct: 262 YTGVRSLEALAVASGYP 278
>pdb|3KP8|A Chain A, The Thioredoxin-Like Domain Of A Vkor Homolog From
Synechococcus Sp
Length = 106
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 66/96 (68%), Gaps = 3/96 (3%)
Query: 177 SPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAK 236
SP A+ LA HL IG MYGA+WC HC +QK++FG+ A Q+ YVEC P+G GT A+
Sbjct: 1 SPLAVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGA-AFDQVPYVECSPNG--PGTPQAQ 57
Query: 237 ACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASGFP 272
C++A I +PTW+ING+ +G + L LA ASG+P
Sbjct: 58 ECTEAGITSYPTWIINGRTYTGVRSLEALAVASGYP 93
>pdb|3FK8|A Chain A, The Crystal Structure Of Disulphide Isomerase From Xylella
Fastidiosa Temecula1
Length = 133
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
Query: 164 NLPFFETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLE-----QKQMFGSEAVKQL 218
NLP+ E + AL+ K H ++GA WC+ C + Q + K
Sbjct: 5 NLPYDEHADAWTQVKKALAAGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHF 64
Query: 219 NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI 251
V+ + + ++++A D +G P V+
Sbjct: 65 EVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVV 97
>pdb|2CWX|A Chain A, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 1 Crystal)
pdb|2CWX|E Chain E, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 1 Crystal)
pdb|2CXE|A Chain A, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2CXE|B Chain B, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2CXE|C Chain C, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2CXE|D Chain D, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2D69|A Chain A, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
pdb|2D69|B Chain B, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
pdb|2D69|D Chain D, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
pdb|2D69|E Chain E, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
Length = 430
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 59/162 (36%), Gaps = 37/162 (22%)
Query: 116 PFIGMFAYGVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLPFFETEITTS 175
P G+ + + +++GV V ++ +Y I+ ++
Sbjct: 289 PRHGITMLALAKAARMIGVDQIHTGTAVGKMAGNYEEIKRIND----------------- 331
Query: 176 SSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNY-VECFPDGYRKGTKI 234
F LS +H+ + G E ++FG + V Q V PDG R G K
Sbjct: 332 ---FLLSKWEHIRPVFPVASGGLHPGLMPELIRLFGKDLVIQAGGGVMGHPDGPRAGAKA 388
Query: 235 AKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASGFPEMSQ 276
+ DA IEG DL + AK+S PE+ +
Sbjct: 389 LRDAIDAAIEGV--------------DLDEKAKSS--PELKK 414
>pdb|2KCD|A Chain A, Solution Nmr Structure Of Ssp0047 From Staphylococcus
Saprophyticus. Northeast Structural Genomics Consortium
Target Syr6
Length = 120
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 138 IASLVVAALSTSYSSIQPLSSSVAEANLPFFETEITTSSSPFALSLAKHLHAIG 191
I + L Y + PLS+ + + N + +T ++ PF L K L AIG
Sbjct: 28 IEEVADDILPDQYVRLGPLSNKILQTNTYYSDTLHKSNIYPFILYYQKQLIAIG 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,716,404
Number of Sequences: 62578
Number of extensions: 247030
Number of successful extensions: 441
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 432
Number of HSP's gapped (non-prelim): 7
length of query: 278
length of database: 14,973,337
effective HSP length: 98
effective length of query: 180
effective length of database: 8,840,693
effective search space: 1591324740
effective search space used: 1591324740
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)