BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023700
         (278 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q54EN4|PDI2_DICDI Protein disulfide-isomerase 2 OS=Dictyostelium discoideum GN=pdi2
           PE=3 SV=1
          Length = 513

 Score = 38.9 bits (89), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 3/93 (3%)

Query: 188 HAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFP 247
           H +   M+ A WC HC   K ++  EA KQL+  +         T+  + C   K++G+P
Sbjct: 58  HDVTLVMFYAPWCGHCKTLKPLY-EEAAKQLSANKKIAIAKVDCTQHEQLCKQNKVQGYP 116

Query: 248 TWVI--NGQVLSGEQDLSDLAKASGFPEMSQPS 278
           T V+  NG+    E D +  +      E  +P+
Sbjct: 117 TLVVFKNGKAEPYEGDRTTKSIVQTLEEELKPT 149


>sp|O66557|BIOA_AQUAE Adenosylmethionine-8-amino-7-oxononanoate aminotransferase
           OS=Aquifex aeolicus (strain VF5) GN=bioA PE=3 SV=1
          Length = 453

 Score = 36.2 bits (82), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 39/92 (42%), Gaps = 11/92 (11%)

Query: 156 LSSSVAEANLPFFETEITTSSSPFALSLAKHLHAIGAKMYGAFW-CSHCLEQKQ---MFG 211
           L+ SVA ANL  FE E T       + L K       +    FW   H  + +Q   M G
Sbjct: 329 LACSVALANLEVFEEERTLEKLQPKIKLLK-------ERLQEFWELKHVGDVRQLGFMAG 381

Query: 212 SEAVKQLNYVECFPDGYRKGTKIAKACSDAKI 243
            E VK     E FP G R G K+A  C +  +
Sbjct: 382 IELVKDKEKGEPFPYGERTGFKVAYKCREKGV 413


>sp|A9Z1V5|VW5B1_MOUSE von Willebrand factor A domain-containing protein 5B1 OS=Mus
           musculus GN=Vwa5b1 PE=2 SV=1
          Length = 1215

 Score = 35.0 bits (79), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 16/125 (12%)

Query: 73  GFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGVEEIQKVL 132
           G L     + L L  SD    + G + G   +  Y  +   P  F G+F Y ++E   V+
Sbjct: 3   GLLNCLTGAALPLMESDVTSYVSGYALGLTASLTYGNLEAQP--FQGLFVYPIDEYSTVV 60

Query: 133 GVQLCIASLVV-------AALSTSYSSIQPLSSSVAEANLPFFETEITTSSSPFALSLAK 185
           G +  IA  VV       A L  S+  IQP   +    N P  E+ I    +P  ++L +
Sbjct: 61  GFEAVIADRVVTIQLRDKAKLDRSHLDIQP---ATVTGNFPEEESPI----APGKVTLDE 113

Query: 186 HLHAI 190
            L  +
Sbjct: 114 DLERV 118


>sp|Q3UE17|MEX3D_MOUSE RNA-binding protein MEX3D OS=Mus musculus GN=Mex3d PE=2 SV=2
          Length = 643

 Score = 33.5 bits (75), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 12/74 (16%)

Query: 155 PLSSSVAEANLPFFETEITTSSSP---FALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFG 211
           P+++SVA   LP  + +++   SP   FA S A H  A+G     A       EQ  + G
Sbjct: 101 PVTASVAPGGLPLLDPDVSPRPSPPDVFA-SFAPHPAALGPSTLLA-------EQLNVIG 152

Query: 212 SEAVKQLNYVECFP 225
           S   K +N  EC P
Sbjct: 153 SRK-KSVNMTECVP 165


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.132    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,559,162
Number of Sequences: 539616
Number of extensions: 4111614
Number of successful extensions: 10553
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 10548
Number of HSP's gapped (non-prelim): 13
length of query: 278
length of database: 191,569,459
effective HSP length: 116
effective length of query: 162
effective length of database: 128,974,003
effective search space: 20893788486
effective search space used: 20893788486
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)