Query 023700
Match_columns 278
No_of_seqs 241 out of 465
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 06:00:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023700.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023700hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03003 PDI_a_ERdj5_N PDIa fam 99.6 1.1E-14 2.3E-19 112.9 7.9 73 189-269 19-101 (101)
2 smart00756 VKc Family of likel 99.6 2.4E-14 5.3E-19 120.8 10.1 63 62-124 4-72 (142)
3 cd03006 PDI_a_EFP1_N PDIa fami 99.5 2.2E-14 4.9E-19 117.0 7.6 74 188-269 29-113 (113)
4 cd02996 PDI_a_ERp44 PDIa famil 99.5 5.2E-14 1.1E-18 110.5 8.5 73 189-269 19-108 (108)
5 cd03004 PDI_a_ERdj5_C PDIa fam 99.5 1.2E-13 2.5E-18 107.1 8.0 74 188-269 19-104 (104)
6 cd02994 PDI_a_TMX PDIa family, 99.5 2.1E-13 4.5E-18 105.2 8.2 76 186-269 14-99 (101)
7 PF00085 Thioredoxin: Thioredo 99.5 4.4E-13 9.6E-18 101.5 9.8 84 177-269 7-100 (103)
8 cd03002 PDI_a_MPD1_like PDI fa 99.5 2.2E-13 4.8E-18 105.7 7.8 85 178-269 9-108 (109)
9 KOG0190 Protein disulfide isom 99.5 4.6E-14 9.9E-19 140.5 5.0 87 176-272 32-131 (493)
10 PRK14889 VKOR family protein; 99.4 4.9E-13 1.1E-17 113.7 10.0 60 65-124 11-73 (143)
11 cd02999 PDI_a_ERp44_like PDIa 99.4 4.5E-13 9.7E-18 105.7 8.9 75 189-268 19-99 (100)
12 cd02956 ybbN ybbN protein fami 99.4 6.6E-13 1.4E-17 101.3 8.7 74 188-269 12-95 (96)
13 PF07884 VKOR: Vitamin K epoxi 99.4 2.5E-13 5.4E-18 112.9 6.0 61 64-124 3-68 (137)
14 cd03005 PDI_a_ERp46 PDIa famil 99.4 6.8E-13 1.5E-17 101.3 6.7 72 190-269 18-102 (102)
15 cd02993 PDI_a_APS_reductase PD 99.4 2.7E-12 5.8E-17 101.7 8.5 75 188-269 21-109 (109)
16 cd03001 PDI_a_P5 PDIa family, 99.4 2.5E-12 5.5E-17 98.3 8.0 74 188-269 18-102 (103)
17 TIGR00411 redox_disulf_1 small 99.4 2.8E-12 6.1E-17 94.7 7.9 74 191-270 2-79 (82)
18 cd03007 PDI_a_ERp29_N PDIa fam 99.3 2.6E-12 5.6E-17 106.3 7.6 80 189-271 19-114 (116)
19 cd02963 TRX_DnaJ TRX domain, D 99.3 3.3E-12 7.2E-17 102.0 6.7 75 188-270 24-109 (111)
20 PHA02278 thioredoxin-like prot 99.3 1.3E-11 2.9E-16 99.1 9.7 77 189-269 15-101 (103)
21 cd03000 PDI_a_TMX3 PDIa family 99.3 6.2E-12 1.3E-16 98.3 7.4 75 188-270 15-101 (104)
22 PTZ00443 Thioredoxin domain-co 99.3 1.7E-11 3.8E-16 111.2 11.4 73 189-269 53-135 (224)
23 PHA02125 thioredoxin-like prot 99.3 1.1E-11 2.3E-16 93.0 8.2 69 192-270 2-74 (75)
24 cd02998 PDI_a_ERp38 PDIa famil 99.3 7.1E-12 1.5E-16 95.4 7.0 75 188-269 18-105 (105)
25 cd02997 PDI_a_PDIR PDIa family 99.3 1.5E-11 3.3E-16 93.9 8.4 75 189-269 18-104 (104)
26 cd02995 PDI_a_PDI_a'_C PDIa fa 99.3 1.1E-11 2.4E-16 94.4 7.5 73 188-269 18-104 (104)
27 cd02985 TRX_CDSP32 TRX family, 99.3 2.5E-11 5.3E-16 95.6 9.2 79 188-270 15-100 (103)
28 PTZ00102 disulphide isomerase; 99.3 2.9E-11 6.3E-16 116.0 11.3 75 189-271 50-136 (477)
29 cd02992 PDI_a_QSOX PDIa family 99.2 2.9E-11 6.3E-16 97.5 7.9 73 189-267 20-110 (114)
30 PRK09381 trxA thioredoxin; Pro 99.2 5.6E-11 1.2E-15 93.0 9.1 74 188-269 21-104 (109)
31 cd02948 TRX_NDPK TRX domain, T 99.2 8.4E-11 1.8E-15 92.3 9.2 72 188-269 17-99 (102)
32 TIGR02196 GlrX_YruB Glutaredox 99.2 6.3E-11 1.4E-15 84.4 6.4 72 192-269 2-73 (74)
33 cd02947 TRX_family TRX family; 99.2 1.9E-10 4.1E-15 83.4 9.0 79 181-269 5-92 (93)
34 cd02950 TxlA TRX-like protein 99.2 1.1E-10 2.3E-15 98.0 7.9 81 184-270 16-107 (142)
35 PRK10996 thioredoxin 2; Provis 99.2 2E-10 4.4E-15 95.7 9.4 77 188-270 52-136 (139)
36 cd02984 TRX_PICOT TRX domain, 99.1 2.8E-10 6.1E-15 86.5 9.0 75 188-269 14-96 (97)
37 cd02953 DsbDgamma DsbD gamma f 99.1 1.6E-10 3.6E-15 89.8 7.7 78 188-269 11-103 (104)
38 TIGR01068 thioredoxin thioredo 99.1 2E-10 4.3E-15 86.4 7.7 73 190-270 16-98 (101)
39 cd02949 TRX_NTR TRX domain, no 99.1 2.6E-10 5.7E-15 88.2 8.6 76 188-269 13-96 (97)
40 PTZ00051 thioredoxin; Provisio 99.1 2.6E-10 5.5E-15 87.1 8.4 73 188-267 18-97 (98)
41 TIGR01126 pdi_dom protein disu 99.1 2.6E-10 5.7E-15 86.3 8.3 74 188-269 13-98 (102)
42 cd02961 PDI_a_family Protein D 99.1 2.9E-10 6.2E-15 84.4 8.0 72 190-269 17-101 (101)
43 cd03065 PDI_b_Calsequestrin_N 99.1 2.8E-10 6E-15 94.3 8.6 84 177-269 17-115 (120)
44 TIGR01130 ER_PDI_fam protein d 99.1 2.7E-10 5.8E-15 107.7 8.6 75 189-271 19-107 (462)
45 cd02975 PfPDO_like_N Pyrococcu 99.1 3.5E-10 7.7E-15 91.2 8.1 81 183-269 15-106 (113)
46 cd02951 SoxW SoxW family; SoxW 99.1 6.3E-10 1.4E-14 89.4 9.3 91 179-269 4-115 (125)
47 cd02973 TRX_GRX_like Thioredox 99.1 1.9E-10 4.2E-15 83.0 5.7 62 191-258 2-66 (67)
48 KOG4277 Uncharacterized conser 99.1 6E-11 1.3E-15 113.2 3.7 71 192-270 47-129 (468)
49 TIGR00424 APS_reduc 5'-adenyly 99.1 3.3E-10 7.2E-15 112.5 8.8 77 188-270 371-460 (463)
50 cd02954 DIM1 Dim1 family; Dim1 99.1 4.1E-10 9E-15 93.0 7.3 61 188-254 14-79 (114)
51 TIGR02187 GlrX_arch Glutaredox 99.0 1.2E-09 2.7E-14 96.6 8.8 82 182-269 127-212 (215)
52 cd02989 Phd_like_TxnDC9 Phosdu 99.0 1.4E-09 3.1E-14 87.8 8.2 60 189-254 23-86 (113)
53 KOG0190 Protein disulfide isom 99.0 5.4E-10 1.2E-14 111.7 6.8 83 182-274 378-474 (493)
54 PLN02309 5'-adenylylsulfate re 99.0 1.1E-09 2.4E-14 108.6 9.0 76 187-269 364-453 (457)
55 cd02957 Phd_like Phosducin (Ph 99.0 6.7E-10 1.5E-14 88.6 6.0 65 189-260 25-96 (113)
56 PTZ00102 disulphide isomerase; 99.0 9.5E-10 2.1E-14 105.6 7.7 78 188-273 375-465 (477)
57 TIGR00412 redox_disulf_2 small 99.0 1.8E-09 3.8E-14 81.6 7.5 68 194-270 4-76 (76)
58 cd02962 TMX2 TMX2 family; comp 99.0 4.8E-09 1E-13 90.1 11.0 72 190-269 49-148 (152)
59 cd02965 HyaE HyaE family; HyaE 99.0 1.5E-09 3.2E-14 89.4 7.1 70 190-267 29-110 (111)
60 cd03026 AhpF_NTD_C TRX-GRX-lik 99.0 1.9E-09 4.2E-14 84.4 7.4 80 182-267 5-88 (89)
61 TIGR01295 PedC_BrcD bacterioci 99.0 2.4E-09 5.1E-14 88.1 8.1 81 189-269 24-120 (122)
62 TIGR02187 GlrX_arch Glutaredox 99.0 2E-09 4.4E-14 95.2 8.1 74 189-268 20-106 (215)
63 COG4243 Predicted membrane pro 99.0 3E-09 6.6E-14 92.4 9.0 57 68-124 20-79 (156)
64 TIGR02180 GRX_euk Glutaredoxin 98.9 1.6E-09 3.4E-14 80.3 5.5 75 192-267 1-76 (84)
65 KOG1731 FAD-dependent sulfhydr 98.9 9.1E-10 2E-14 111.3 5.5 71 190-266 59-146 (606)
66 KOG0191 Thioredoxin/protein di 98.9 1.5E-09 3.2E-14 103.7 5.8 81 182-270 41-131 (383)
67 PF13098 Thioredoxin_2: Thiore 98.9 1.8E-09 3.8E-14 84.3 4.8 83 187-269 4-112 (112)
68 PRK00293 dipZ thiol:disulfide 98.9 3.6E-08 7.8E-13 99.8 14.1 83 184-270 470-567 (571)
69 COG3118 Thioredoxin domain-con 98.8 6.7E-09 1.4E-13 98.3 7.7 90 174-271 28-128 (304)
70 KOG0907 Thioredoxin [Posttrans 98.8 1.2E-08 2.6E-13 82.9 7.2 83 180-269 13-102 (106)
71 cd02976 NrdH NrdH-redoxin (Nrd 98.7 3.3E-08 7.1E-13 70.3 6.7 71 192-268 2-72 (73)
72 TIGR02200 GlrX_actino Glutared 98.7 6E-08 1.3E-12 70.5 7.0 70 192-268 2-74 (77)
73 cd02959 ERp19 Endoplasmic reti 98.7 4.9E-08 1.1E-12 79.5 7.2 72 178-254 9-88 (117)
74 KOG0910 Thioredoxin-like prote 98.7 7E-08 1.5E-12 83.6 7.9 92 172-269 45-144 (150)
75 cd02952 TRP14_like Human TRX-r 98.7 9.3E-08 2E-12 79.3 8.1 80 189-268 22-117 (119)
76 KOG0912 Thiol-disulfide isomer 98.7 1.4E-08 3E-13 96.9 3.6 78 188-273 13-106 (375)
77 PLN00410 U5 snRNP protein, DIM 98.7 1.3E-07 2.9E-12 80.9 9.1 76 188-269 23-116 (142)
78 TIGR01130 ER_PDI_fam protein d 98.6 5.2E-08 1.1E-12 92.2 6.9 77 188-274 364-455 (462)
79 cd03010 TlpA_like_DsbE TlpA-li 98.6 1.3E-07 2.9E-12 75.6 7.5 85 181-265 18-126 (127)
80 cd03419 GRX_GRXh_1_2_like Glut 98.6 9.4E-08 2E-12 70.8 5.6 74 192-267 2-75 (82)
81 KOG0191 Thioredoxin/protein di 98.6 6.1E-08 1.3E-12 92.7 5.4 81 183-271 157-250 (383)
82 PHA03050 glutaredoxin; Provisi 98.6 2.3E-07 5E-12 75.4 7.4 84 182-266 5-90 (108)
83 TIGR02189 GlrX-like_plant Glut 98.5 1.6E-07 3.5E-12 74.7 6.2 80 185-266 3-82 (99)
84 cd02066 GRX_family Glutaredoxi 98.5 1.1E-07 2.4E-12 67.0 4.7 70 192-266 2-71 (72)
85 PRK03147 thiol-disulfide oxido 98.5 6.3E-07 1.4E-11 74.8 9.8 89 181-269 54-168 (173)
86 PRK11200 grxA glutaredoxin 1; 98.5 1.8E-07 3.9E-12 71.2 5.7 73 191-267 2-80 (85)
87 cd02955 SSP411 TRX domain, SSP 98.5 2.8E-07 6.2E-12 76.6 7.2 73 177-255 4-93 (124)
88 PRK15412 thiol:disulfide inter 98.5 1.8E-06 3.9E-11 74.8 12.3 82 188-269 68-172 (185)
89 TIGR00385 dsbE periplasmic pro 98.5 1.2E-06 2.7E-11 74.9 10.9 82 188-269 63-167 (173)
90 cd02986 DLP Dim1 family, Dim1- 98.5 3.1E-07 6.7E-12 76.3 6.9 61 188-254 14-79 (114)
91 TIGR02181 GRX_bact Glutaredoxi 98.5 2E-07 4.3E-12 69.5 5.3 71 192-267 1-71 (79)
92 TIGR02190 GlrX-dom Glutaredoxi 98.5 2.5E-07 5.5E-12 69.9 5.2 71 189-268 7-77 (79)
93 cd02987 Phd_like_Phd Phosducin 98.5 4.8E-07 1E-11 78.9 7.7 58 190-254 85-146 (175)
94 TIGR02740 TraF-like TraF-like 98.4 7.2E-07 1.6E-11 82.8 8.6 90 180-269 158-260 (271)
95 cd03418 GRX_GRXb_1_3_like Glut 98.4 5E-07 1.1E-11 66.1 5.6 71 192-267 2-73 (75)
96 cd03011 TlpA_like_ScsD_MtbDsbE 98.4 8.8E-07 1.9E-11 70.0 7.3 87 181-268 13-121 (123)
97 PF00462 Glutaredoxin: Glutare 98.4 3.7E-07 8E-12 65.1 4.6 59 192-255 1-59 (60)
98 PRK14018 trifunctional thiored 98.4 1.5E-06 3.3E-11 87.8 10.2 83 188-270 56-170 (521)
99 cd03027 GRX_DEP Glutaredoxin ( 98.4 3.6E-07 7.9E-12 67.6 4.2 70 192-266 3-72 (73)
100 TIGR02183 GRXA Glutaredoxin, G 98.4 6E-07 1.3E-11 69.3 5.5 74 192-267 2-79 (86)
101 cd02988 Phd_like_VIAF Phosduci 98.4 1.5E-06 3.3E-11 77.0 8.3 72 190-270 104-189 (192)
102 cd02982 PDI_b'_family Protein 98.4 1.2E-06 2.5E-11 67.3 6.5 76 189-270 13-100 (103)
103 TIGR02194 GlrX_NrdH Glutaredox 98.4 1.2E-06 2.6E-11 64.9 6.2 71 192-268 1-71 (72)
104 TIGR02738 TrbB type-F conjugat 98.3 3.3E-06 7.2E-11 72.5 9.7 82 188-269 50-149 (153)
105 PTZ00062 glutaredoxin; Provisi 98.3 2.2E-06 4.7E-11 77.2 8.1 72 182-268 8-89 (204)
106 smart00594 UAS UAS domain. 98.3 3.6E-06 7.8E-11 68.6 8.6 98 168-269 7-121 (122)
107 cd03029 GRX_hybridPRX5 Glutare 98.3 1.9E-06 4E-11 63.5 5.6 69 192-269 3-71 (72)
108 cd03009 TryX_like_TryX_NRX Try 98.2 1.4E-06 3.1E-11 70.1 5.0 76 180-255 10-112 (131)
109 PF13192 Thioredoxin_3: Thiore 98.2 2.6E-06 5.6E-11 64.2 5.9 70 192-269 3-75 (76)
110 TIGR00365 monothiol glutaredox 98.2 2.2E-06 4.8E-11 68.0 5.8 81 182-267 4-89 (97)
111 cd02958 UAS UAS family; UAS is 98.2 5.4E-06 1.2E-10 66.1 7.9 88 178-269 7-107 (114)
112 PRK10638 glutaredoxin 3; Provi 98.2 2.3E-06 5.1E-11 65.0 5.5 72 191-267 3-74 (83)
113 cd02966 TlpA_like_family TlpA- 98.2 3.3E-06 7.2E-11 63.2 5.5 74 181-254 12-109 (116)
114 COG0695 GrxC Glutaredoxin and 98.2 6.1E-06 1.3E-10 63.5 7.1 75 191-269 2-77 (80)
115 cd02964 TryX_like_family Trypa 98.2 2.8E-06 6E-11 69.1 5.4 77 179-255 8-112 (132)
116 PRK10329 glutaredoxin-like pro 98.2 6.5E-06 1.4E-10 63.4 7.1 71 192-269 3-73 (81)
117 cd03028 GRX_PICOT_like Glutare 98.1 3.2E-06 6.8E-11 65.7 4.9 78 185-267 3-85 (90)
118 PF13899 Thioredoxin_7: Thiore 98.1 5.4E-06 1.2E-10 62.7 5.4 67 178-251 7-79 (82)
119 KOG0908 Thioredoxin-like prote 98.1 4.5E-06 9.7E-11 78.1 5.2 76 178-259 11-93 (288)
120 cd01659 TRX_superfamily Thiore 98.1 7.9E-06 1.7E-10 53.3 4.8 57 192-251 1-59 (69)
121 TIGR03143 AhpF_homolog putativ 98.0 2.8E-05 6.1E-10 78.1 8.9 86 177-270 464-555 (555)
122 cd03023 DsbA_Com1_like DsbA fa 98.0 4.1E-05 8.9E-10 61.6 8.1 35 235-269 119-153 (154)
123 cd02967 mauD Methylamine utili 98.0 5.7E-06 1.2E-10 64.5 3.0 66 181-249 13-82 (114)
124 TIGR02661 MauD methylamine deh 97.9 6.1E-05 1.3E-09 65.7 9.0 82 189-270 75-176 (189)
125 PRK13728 conjugal transfer pro 97.9 4.7E-05 1E-09 67.7 8.3 77 192-268 73-166 (181)
126 cd03020 DsbA_DsbC_DsbG DsbA fa 97.8 2E-05 4.4E-10 68.6 4.6 36 234-269 161-197 (197)
127 cd02960 AGR Anterior Gradient 97.8 5.8E-05 1.3E-09 63.9 7.2 69 176-251 11-85 (130)
128 PF13905 Thioredoxin_8: Thiore 97.8 2.7E-05 5.9E-10 59.1 4.4 66 189-254 2-94 (95)
129 PLN02919 haloacid dehalogenase 97.8 0.00025 5.4E-09 77.0 12.4 82 188-269 420-532 (1057)
130 COG4232 Thiol:disulfide interc 97.7 0.00051 1.1E-08 70.4 12.4 88 178-269 464-564 (569)
131 PRK15317 alkyl hydroperoxide r 97.6 0.00018 3.9E-09 71.5 8.2 88 177-272 104-197 (517)
132 PRK12759 bifunctional gluaredo 97.5 0.00016 3.5E-09 70.8 6.3 68 191-264 3-79 (410)
133 PRK10824 glutaredoxin-4; Provi 97.5 0.00026 5.7E-09 58.7 6.4 80 182-266 7-91 (115)
134 COG0526 TrxA Thiol-disulfide i 97.5 0.00029 6.3E-09 51.1 6.0 74 192-270 36-121 (127)
135 cd03012 TlpA_like_DipZ_like Tl 97.5 0.00023 5E-09 57.3 5.9 32 181-212 16-47 (126)
136 PF08534 Redoxin: Redoxin; In 97.5 0.00029 6.4E-09 57.4 6.1 90 178-267 18-144 (146)
137 KOG1752 Glutaredoxin and relat 97.5 0.00048 1E-08 56.3 7.2 82 183-266 7-88 (104)
138 cd03008 TryX_like_RdCVF Trypar 97.4 0.00025 5.4E-09 60.8 5.7 74 182-255 19-125 (146)
139 KOG0913 Thiol-disulfide isomer 97.4 3.1E-05 6.8E-10 71.7 -0.2 74 191-272 42-125 (248)
140 cd02972 DsbA_family DsbA famil 97.4 0.0004 8.6E-09 50.9 5.7 68 192-259 1-97 (98)
141 PTZ00062 glutaredoxin; Provisi 97.4 0.00047 1E-08 62.2 6.7 84 179-267 102-190 (204)
142 TIGR03140 AhpF alkyl hydropero 97.2 0.001 2.2E-08 66.2 8.0 86 178-271 106-197 (515)
143 PF13728 TraF: F plasmid trans 97.2 0.0022 4.7E-08 58.0 8.9 84 182-267 114-212 (215)
144 PRK10877 protein disulfide iso 97.2 0.0014 3.1E-08 59.6 7.7 37 234-270 191-228 (232)
145 cd00340 GSH_Peroxidase Glutath 97.1 0.0012 2.6E-08 55.1 5.8 32 180-212 14-45 (152)
146 KOG2501 Thioredoxin, nucleored 96.8 0.001 2.2E-08 58.3 3.2 66 189-254 34-127 (157)
147 cd03031 GRX_GRX_like Glutaredo 96.7 0.0027 5.8E-08 54.7 4.9 71 192-267 2-82 (147)
148 cd02969 PRX_like1 Peroxiredoxi 96.6 0.0055 1.2E-07 51.8 6.2 78 181-258 17-126 (171)
149 TIGR01626 ytfJ_HI0045 conserve 96.5 0.0066 1.4E-07 54.1 6.5 88 182-269 53-176 (184)
150 PF00578 AhpC-TSA: AhpC/TSA fa 96.4 0.0054 1.2E-07 48.0 4.5 33 180-212 17-50 (124)
151 PTZ00056 glutathione peroxidas 96.3 0.012 2.7E-07 52.1 6.8 33 180-212 31-63 (199)
152 cd03017 PRX_BCP Peroxiredoxin 96.2 0.012 2.7E-07 47.2 6.0 88 181-268 16-138 (140)
153 PF14595 Thioredoxin_9: Thiore 96.2 0.0045 9.8E-08 51.8 3.3 81 176-261 29-118 (129)
154 PF06110 DUF953: Eukaryotic pr 96.2 0.0023 4.9E-08 53.5 1.5 62 196-259 34-105 (119)
155 PF03190 Thioredox_DsbH: Prote 96.1 0.018 3.8E-07 50.8 6.7 72 177-254 26-114 (163)
156 PRK11509 hydrogenase-1 operon 96.1 0.011 2.4E-07 50.4 5.2 66 199-270 47-121 (132)
157 PLN02399 phospholipid hydroper 96.1 0.019 4.2E-07 52.9 7.1 34 179-212 90-123 (236)
158 TIGR02540 gpx7 putative glutat 96.0 0.018 3.9E-07 48.0 6.1 33 180-212 14-46 (153)
159 cd03060 GST_N_Omega_like GST_N 95.9 0.026 5.7E-07 41.1 5.9 58 193-256 2-60 (71)
160 cd02991 UAS_ETEA UAS family, E 95.9 0.04 8.7E-07 45.3 7.4 86 178-270 7-110 (116)
161 PF13462 Thioredoxin_4: Thiore 95.8 0.0089 1.9E-07 48.9 3.4 36 234-269 125-160 (162)
162 cd03014 PRX_Atyp2cys Peroxired 95.7 0.01 2.2E-07 48.2 3.4 33 180-212 18-51 (143)
163 PRK13703 conjugal pilus assemb 95.6 0.075 1.6E-06 49.6 9.1 80 188-267 143-235 (248)
164 TIGR02739 TraF type-F conjugat 95.6 0.067 1.5E-06 50.1 8.6 86 182-267 144-242 (256)
165 cd00570 GST_N_family Glutathio 95.5 0.058 1.3E-06 36.7 6.1 60 193-257 2-61 (71)
166 cd02970 PRX_like2 Peroxiredoxi 95.5 0.022 4.7E-07 45.8 4.5 64 181-248 15-84 (149)
167 PLN02412 probable glutathione 95.2 0.052 1.1E-06 46.5 6.2 33 180-212 21-53 (167)
168 cd03022 DsbA_HCCA_Iso DsbA fam 95.1 0.025 5.5E-07 47.7 4.0 36 235-270 157-192 (192)
169 COG2143 Thioredoxin-related pr 95.1 0.05 1.1E-06 48.5 5.7 83 190-272 44-148 (182)
170 cd03015 PRX_Typ2cys Peroxiredo 95.1 0.11 2.3E-06 44.3 7.7 33 180-212 21-54 (173)
171 PTZ00256 glutathione peroxidas 95.0 0.046 1E-06 47.4 5.3 33 180-212 32-65 (183)
172 cd03051 GST_N_GTT2_like GST_N 94.9 0.077 1.7E-06 37.8 5.4 61 192-255 1-62 (74)
173 PRK00522 tpx lipid hydroperoxi 94.6 0.032 7E-07 47.7 3.2 33 180-212 36-69 (167)
174 PRK11657 dsbG disulfide isomer 94.5 0.17 3.8E-06 46.6 8.0 38 234-271 208-250 (251)
175 cd03037 GST_N_GRX2 GST_N famil 94.4 0.12 2.6E-06 37.4 5.5 58 193-257 2-60 (71)
176 cd03045 GST_N_Delta_Epsilon GS 94.3 0.15 3.3E-06 36.7 5.8 61 192-255 1-61 (74)
177 PF01323 DSBA: DSBA-like thior 94.1 0.054 1.2E-06 45.6 3.6 35 235-269 157-192 (193)
178 cd03035 ArsC_Yffb Arsenate Red 93.9 0.06 1.3E-06 43.4 3.4 49 192-242 1-49 (105)
179 PRK13190 putative peroxiredoxi 93.9 0.19 4.2E-06 44.5 6.8 90 180-269 19-150 (202)
180 cd03059 GST_N_SspA GST_N famil 93.7 0.3 6.6E-06 34.9 6.4 59 192-256 1-59 (73)
181 cd02977 ArsC_family Arsenate R 93.6 0.09 2E-06 41.5 3.7 34 192-226 1-34 (105)
182 cd03036 ArsC_like Arsenate Red 93.5 0.087 1.9E-06 42.6 3.6 50 192-243 1-50 (111)
183 PRK10382 alkyl hydroperoxide r 93.4 0.24 5.2E-06 43.8 6.5 90 180-269 23-152 (187)
184 cd03018 PRX_AhpE_like Peroxire 93.4 0.1 2.3E-06 42.3 3.9 33 180-212 19-53 (149)
185 cd03016 PRX_1cys Peroxiredoxin 93.2 0.22 4.7E-06 44.1 5.9 32 181-212 17-50 (203)
186 cd03040 GST_N_mPGES2 GST_N fam 93.1 0.28 6E-06 35.9 5.5 53 192-252 2-54 (77)
187 KOG3425 Uncharacterized conser 93.1 0.076 1.7E-06 45.2 2.8 62 198-260 43-113 (128)
188 TIGR01617 arsC_related transcr 92.9 0.1 2.2E-06 42.3 3.2 64 192-258 1-65 (117)
189 COG4545 Glutaredoxin-related p 92.6 0.19 4.2E-06 39.8 4.1 65 193-258 5-78 (85)
190 PF13417 GST_N_3: Glutathione 92.4 0.46 1E-05 35.0 5.9 59 194-258 1-59 (75)
191 cd03024 DsbA_FrnE DsbA family, 92.3 0.18 3.9E-06 43.1 4.1 35 235-269 165-200 (201)
192 PF05768 DUF836: Glutaredoxin- 92.3 0.92 2E-05 34.5 7.5 69 192-269 2-80 (81)
193 PRK01655 spxA transcriptional 90.9 0.32 6.9E-06 40.7 4.0 34 192-226 2-35 (131)
194 PTZ00253 tryparedoxin peroxida 90.8 0.58 1.3E-05 41.1 5.8 90 180-269 28-160 (199)
195 cd02968 SCO SCO (an acronym fo 90.7 0.34 7.3E-06 38.9 3.9 32 181-212 15-47 (142)
196 cd03056 GST_N_4 GST_N family, 90.3 1.2 2.5E-05 31.7 6.0 61 193-256 2-62 (73)
197 cd03055 GST_N_Omega GST_N fami 90.1 1.1 2.4E-05 34.3 6.1 58 192-255 19-77 (89)
198 cd03019 DsbA_DsbA DsbA family, 89.9 0.32 7E-06 40.4 3.2 29 235-263 133-161 (178)
199 PRK09437 bcp thioredoxin-depen 89.6 0.43 9.3E-06 39.4 3.7 32 181-212 23-55 (154)
200 cd03041 GST_N_2GST_N GST_N fam 89.4 0.99 2.2E-05 33.4 5.3 53 192-251 2-56 (77)
201 COG1651 DsbG Protein-disulfide 89.4 0.47 1E-05 42.2 4.0 37 234-270 204-240 (244)
202 PRK15000 peroxidase; Provision 89.2 0.81 1.8E-05 40.7 5.4 90 180-269 25-158 (200)
203 cd02971 PRX_family Peroxiredox 89.2 0.41 8.8E-06 38.2 3.2 31 182-212 16-47 (140)
204 cd03032 ArsC_Spx Arsenate Redu 89.1 0.54 1.2E-05 38.0 3.9 34 192-226 2-35 (115)
205 PRK12559 transcriptional regul 88.4 0.6 1.3E-05 39.2 3.8 35 192-227 2-36 (131)
206 KOG0914 Thioredoxin-like prote 87.4 1.2 2.6E-05 41.8 5.5 68 180-255 136-217 (265)
207 PRK13189 peroxiredoxin; Provis 86.5 2.4 5.2E-05 38.4 6.8 89 181-269 27-159 (222)
208 TIGR03137 AhpC peroxiredoxin. 85.2 0.56 1.2E-05 40.9 2.0 32 181-212 24-56 (187)
209 PRK10954 periplasmic protein d 85.2 0.75 1.6E-05 40.6 2.9 36 235-270 157-201 (207)
210 PRK00611 putative disulfide ox 83.2 4.3 9.2E-05 34.9 6.5 50 68-123 70-121 (135)
211 PRK13344 spxA transcriptional 83.0 1.9 4E-05 36.3 4.2 49 192-242 2-50 (132)
212 KOG0911 Glutaredoxin-related p 82.5 0.98 2.1E-05 42.0 2.5 69 190-264 19-94 (227)
213 PTZ00137 2-Cys peroxiredoxin; 82.5 3.9 8.6E-05 38.4 6.5 90 180-269 89-221 (261)
214 cd03033 ArsC_15kD Arsenate Red 80.4 2.2 4.8E-05 35.0 3.7 50 191-242 1-50 (113)
215 cd03019 DsbA_DsbA DsbA family, 77.1 1.8 4E-05 35.8 2.3 25 189-213 16-40 (178)
216 cd03058 GST_N_Tau GST_N family 76.5 11 0.00023 27.3 6.0 58 192-256 1-60 (74)
217 COG2761 FrnE Predicted dithiol 76.2 3.2 6.8E-05 38.6 3.7 33 236-268 175-208 (225)
218 PRK10606 btuE putative glutath 76.1 1.5 3.2E-05 38.9 1.5 73 180-254 17-102 (183)
219 PF13462 Thioredoxin_4: Thiore 74.0 3.4 7.3E-05 33.6 3.0 23 190-212 14-36 (162)
220 PRK03113 putative disulfide ox 73.6 10 0.00023 32.5 6.0 56 64-124 67-126 (139)
221 PF13743 Thioredoxin_5: Thiore 71.0 2.5 5.4E-05 36.8 1.7 32 235-266 137-175 (176)
222 cd03021 DsbA_GSTK DsbA family, 69.0 5.9 0.00013 34.8 3.6 35 236-270 170-209 (209)
223 PF02114 Phosducin: Phosducin; 64.5 13 0.00028 35.0 5.1 76 191-273 149-238 (265)
224 PRK10954 periplasmic protein d 64.0 3.8 8.2E-05 36.2 1.4 22 189-210 38-59 (207)
225 cd03053 GST_N_Phi GST_N family 63.0 42 0.00091 24.0 6.6 61 192-256 2-63 (76)
226 cd03054 GST_N_Metaxin GST_N fa 63.0 24 0.00052 25.3 5.3 49 198-259 14-62 (72)
227 PF05279 Asp-B-Hydro_N: Aspart 61.3 8.8 0.00019 36.1 3.4 30 56-85 6-35 (243)
228 COG3019 Predicted metal-bindin 58.3 17 0.00036 32.0 4.3 76 192-272 28-103 (149)
229 PF14673 DUF4459: Domain of un 57.1 4.1 8.9E-05 34.8 0.4 18 191-213 92-109 (159)
230 PF13848 Thioredoxin_6: Thiore 55.7 78 0.0017 26.1 7.9 70 192-269 99-182 (184)
231 PRK09481 sspA stringent starva 55.2 42 0.00091 29.1 6.4 58 192-255 11-68 (211)
232 COG3531 Predicted protein-disu 54.2 8.6 0.00019 35.5 2.0 32 235-266 164-202 (212)
233 cd03052 GST_N_GDAP1 GST_N fami 53.0 70 0.0015 23.5 6.4 61 192-255 1-61 (73)
234 cd03049 GST_N_3 GST_N family, 52.7 58 0.0013 23.2 5.9 59 192-255 1-61 (73)
235 PRK13599 putative peroxiredoxi 52.5 9.8 0.00021 34.3 2.1 21 192-212 33-53 (215)
236 TIGR00014 arsC arsenate reduct 51.9 22 0.00048 28.8 3.9 49 192-242 1-49 (114)
237 PRK01749 disulfide bond format 50.2 57 0.0012 28.7 6.5 51 69-123 81-151 (176)
238 PF13848 Thioredoxin_6: Thiore 47.4 48 0.001 27.3 5.3 53 207-269 9-71 (184)
239 PRK01103 formamidopyrimidine/5 46.6 3.7 8E-05 38.3 -1.6 11 196-206 264-274 (274)
240 PHA03049 IMV membrane protein; 46.5 19 0.00042 27.8 2.5 26 128-154 2-27 (68)
241 cd03042 GST_N_Zeta GST_N famil 46.0 88 0.0019 21.9 5.9 60 193-256 2-62 (73)
242 PF06053 DUF929: Domain of unk 46.0 17 0.00037 34.3 2.6 20 188-207 58-77 (249)
243 TIGR03143 AhpF_homolog putativ 45.3 79 0.0017 32.2 7.5 73 187-265 364-446 (555)
244 cd02981 PDI_b_family Protein D 45.2 1.3E+02 0.0027 22.4 7.9 69 188-269 17-94 (97)
245 cd03013 PRX5_like Peroxiredoxi 44.7 15 0.00033 31.0 2.0 65 180-247 20-93 (155)
246 KOG2640 Thioredoxin [Function 44.4 7.5 0.00016 37.9 0.0 85 180-269 66-158 (319)
247 cd03038 GST_N_etherase_LigE GS 44.1 40 0.00088 24.9 4.0 55 198-256 14-69 (84)
248 COG0266 Nei Formamidopyrimidin 43.2 5.1 0.00011 38.2 -1.3 10 196-205 264-273 (273)
249 COG3917 NahD 2-hydroxychromene 43.2 27 0.0006 32.0 3.4 34 235-268 166-199 (203)
250 PRK14811 formamidopyrimidine-D 43.2 3.5 7.5E-05 38.6 -2.4 14 196-209 254-267 (269)
251 PRK13191 putative peroxiredoxi 42.9 17 0.00037 32.7 2.1 20 193-212 39-58 (215)
252 PRK10853 putative reductase; P 42.3 34 0.00074 28.2 3.6 51 192-244 2-52 (118)
253 PF01216 Calsequestrin: Calseq 41.7 77 0.0017 31.8 6.5 85 175-269 40-140 (383)
254 cd03061 GST_N_CLIC GST_N famil 40.0 86 0.0019 24.9 5.5 55 197-257 19-73 (91)
255 cd03034 ArsC_ArsC Arsenate Red 39.3 44 0.00095 26.9 3.8 49 192-242 1-49 (112)
256 cd03030 GRX_SH3BGR Glutaredoxi 38.8 69 0.0015 25.4 4.7 60 202-266 18-81 (92)
257 COG3529 Predicted nucleic-acid 38.4 17 0.00038 27.8 1.2 28 198-228 11-40 (66)
258 PRK04388 disulfide bond format 38.0 1.1E+02 0.0024 26.7 6.3 52 68-123 78-151 (172)
259 KOG1672 ATP binding protein [P 37.1 51 0.0011 30.5 4.2 75 179-260 76-157 (211)
260 PF07449 HyaE: Hydrogenase-1 e 37.1 41 0.00089 27.8 3.3 31 234-264 71-106 (107)
261 PF09526 DUF2387: Probable met 36.9 5 0.00011 30.9 -2.0 26 199-227 10-37 (71)
262 PRK02110 disulfide bond format 36.7 1.3E+02 0.0028 26.3 6.6 52 67-123 78-150 (169)
263 cd03025 DsbA_FrnE_like DsbA fa 36.7 21 0.00046 30.0 1.6 17 235-251 159-175 (193)
264 PF06953 ArsD: Arsenical resis 35.1 46 0.00099 28.2 3.3 43 234-276 61-105 (123)
265 PF05961 Chordopox_A13L: Chord 35.0 34 0.00075 26.5 2.3 25 128-153 2-26 (68)
266 COG3634 AhpF Alkyl hydroperoxi 34.2 64 0.0014 32.9 4.7 72 192-269 120-194 (520)
267 cd02983 P5_C P5 family, C-term 33.7 1.2E+02 0.0026 25.2 5.6 58 207-270 43-112 (130)
268 PF07912 ERp29_N: ERp29, N-ter 33.6 2.8E+02 0.0061 23.9 7.8 80 188-270 22-116 (126)
269 TIGR02182 GRXB Glutaredoxin, G 33.0 1.1E+02 0.0024 26.7 5.5 56 193-255 1-57 (209)
270 PRK13945 formamidopyrimidine-D 32.2 9.4 0.0002 35.9 -1.4 10 196-205 273-282 (282)
271 cd03039 GST_N_Sigma_like GST_N 31.6 1.1E+02 0.0024 21.7 4.5 59 193-256 2-60 (72)
272 PRK14810 formamidopyrimidine-D 30.7 11 0.00024 35.3 -1.2 11 195-205 262-272 (272)
273 cd03050 GST_N_Theta GST_N fami 30.3 2.1E+02 0.0045 20.5 6.4 61 192-255 1-61 (76)
274 PRK15113 glutathione S-transfe 30.0 2E+02 0.0042 25.0 6.6 61 190-254 4-67 (214)
275 TIGR01616 nitro_assoc nitrogen 29.3 73 0.0016 26.6 3.6 21 192-212 3-23 (126)
276 TIGR00577 fpg formamidopyrimid 27.3 14 0.00031 34.5 -1.1 9 196-204 264-272 (272)
277 cd03073 PDI_b'_ERp72_ERp57 PDI 27.1 1.2E+02 0.0027 24.4 4.5 59 205-269 35-107 (111)
278 PF09451 ATG27: Autophagy-rela 27.0 1.5E+02 0.0031 27.7 5.5 29 57-87 197-225 (268)
279 PRK10445 endonuclease VIII; Pr 26.6 14 0.0003 34.5 -1.3 10 196-205 254-263 (263)
280 PRK10026 arsenate reductase; P 26.5 1.1E+02 0.0023 26.4 4.2 50 191-242 3-52 (141)
281 COG1393 ArsC Arsenate reductas 26.0 1.2E+02 0.0025 25.2 4.2 49 192-242 3-51 (117)
282 KOG3029 Glutathione S-transfer 25.5 2.3E+02 0.005 28.0 6.6 80 179-268 76-174 (370)
283 PF10939 DUF2631: Protein of u 25.4 1.2E+02 0.0025 23.4 3.7 19 46-64 10-28 (65)
284 PRK10387 glutaredoxin 2; Provi 25.2 1.8E+02 0.004 24.6 5.5 56 192-254 1-57 (210)
285 PF04134 DUF393: Protein of un 24.5 1.5E+02 0.0032 23.1 4.5 69 197-271 4-79 (114)
286 PF13807 GNVR: G-rich domain o 23.9 1.8E+02 0.0038 22.1 4.6 30 55-84 50-80 (82)
287 TIGR02443 conserved hypothetic 23.5 11 0.00025 28.3 -1.9 28 198-228 10-39 (59)
288 cd03044 GST_N_EF1Bgamma GST_N 22.8 2.8E+02 0.006 19.9 5.4 60 193-256 2-62 (75)
289 PF11976 Rad60-SLD: Ubiquitin- 22.0 1.4E+02 0.003 21.5 3.6 31 235-265 28-60 (72)
290 cd03080 GST_N_Metaxin_like GST 21.4 3.2E+02 0.0069 19.6 6.4 47 199-258 16-62 (75)
291 cd03067 PDI_b_PDIR_N PDIb fami 21.2 1.2E+02 0.0027 25.5 3.4 71 192-269 23-108 (112)
292 cd05855 Ig_TrkB_d5 Fifth domai 21.1 44 0.00096 25.5 0.8 22 238-259 2-27 (79)
No 1
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.56 E-value=1.1e-14 Score=112.87 Aligned_cols=73 Identities=21% Similarity=0.381 Sum_probs=60.2
Q ss_pred ccceEEEccCCCHHHHHHHHhhhhHhh--h---cCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE---EecC
Q 023700 189 AIGAKMYGAFWCSHCLEQKQMFGSEAV--K---QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSG 258 (278)
Q Consensus 189 ~~gakmYGA~WCpHC~~qK~lFgkeA~--~---~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk---~y~G 258 (278)
..-+++|+|+||+||++++|.|.+.|. + .+..|||+.+ .++|++++|++|||+++ +|+ +|.|
T Consensus 19 ~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G 90 (101)
T cd03003 19 EIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDD--------RMLCRSQGVNSYPSLYVFPSGMNPEKYYG 90 (101)
T ss_pred CeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCcc--------HHHHHHcCCCccCEEEEEcCCCCcccCCC
Confidence 455788999999999999999988542 2 2457999753 48999999999999987 776 7999
Q ss_pred CCCHHHHHHHh
Q 023700 259 EQDLSDLAKAS 269 (278)
Q Consensus 259 ~rsle~La~~s 269 (278)
.++.++|.+|+
T Consensus 91 ~~~~~~l~~f~ 101 (101)
T cd03003 91 DRSKESLVKFA 101 (101)
T ss_pred CCCHHHHHhhC
Confidence 99999999874
No 2
>smart00756 VKc Family of likely enzymes that includes the catalytic subunit of vitamin K epoxide reductase. Bacterial homologues are fused to members of the thioredoxin family of oxidoreductases.
Probab=99.55 E-value=2.4e-14 Score=120.83 Aligned_cols=63 Identities=43% Similarity=0.671 Sum_probs=56.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhcCC-----CccCCCC-CCCccccccchhhhhcCcchhHHHHHHHh
Q 023700 62 PYGWCAGIGGVGFLETTYLSYLKLTNS-----DAFCPIG-GASCGDVLNSDYAVVFGVPLPFIGMFAYG 124 (278)
Q Consensus 62 ~~~~i~~la~iGll~t~yLt~~kl~~~-----~~~C~i~-~~gC~~Vl~S~ya~vfGiPlsl~Gl~aY~ 124 (278)
.+.++++++++|+++|+||+++|++.. .+.|++| ..||++|++||||++||+||+++|+++|+
T Consensus 4 ~~~~~~~l~~iGl~~S~yl~~~~~~~~~~~~~~~~C~~~~~~sC~~Vl~S~~a~~~GiP~s~lG~~~y~ 72 (142)
T smart00756 4 TRWILLILGLIGLLASLYLTYEKLTLLEDPDYVASCDINPVVSCGKVLSSPYASIFGIPLSLLGIAAYL 72 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCcCCCCCCCCHHHHhcChhHHHcCCchHHHHHHHHH
Confidence 345677999999999999999998643 3899998 57999999999999999999999999998
No 3
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.53 E-value=2.2e-14 Score=116.96 Aligned_cols=74 Identities=18% Similarity=0.265 Sum_probs=60.4
Q ss_pred cccceEEEccCCCHHHHHHHHhhhhHhh--h---cCcEEEccCCCCCCCcccHHhh-hhcCCcccceeEE--CCE---Ee
Q 023700 188 HAIGAKMYGAFWCSHCLEQKQMFGSEAV--K---QLNYVECFPDGYRKGTKIAKAC-SDAKIEGFPTWVI--NGQ---VL 256 (278)
Q Consensus 188 ~~~gakmYGA~WCpHC~~qK~lFgkeA~--~---~l~yVEC~~dg~n~~~k~~~lC-~~~~V~GyPTw~i--nGk---~y 256 (278)
+...+++|+|+||+||+.++|.|.+.|. + .+..|||+.+ .++| ++++|++|||+++ ||+ +|
T Consensus 29 ~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~--------~~l~~~~~~I~~~PTl~lf~~g~~~~~y 100 (113)
T cd03006 29 AEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWP--------QGKCRKQKHFFYFPVIHLYYRSRGPIEY 100 (113)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCC--------hHHHHHhcCCcccCEEEEEECCccceEE
Confidence 4456889999999999999999998542 2 2357888753 4789 5899999999887 776 79
Q ss_pred cCCCCHHHHHHHh
Q 023700 257 SGEQDLSDLAKAS 269 (278)
Q Consensus 257 ~G~rsle~La~~s 269 (278)
.|.++.++|..|.
T Consensus 101 ~G~~~~~~i~~~~ 113 (113)
T cd03006 101 KGPMRAPYMEKFV 113 (113)
T ss_pred eCCCCHHHHHhhC
Confidence 9999999998863
No 4
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.51 E-value=5.2e-14 Score=110.45 Aligned_cols=73 Identities=22% Similarity=0.389 Sum_probs=58.9
Q ss_pred ccceEEEccCCCHHHHHHHHhhhhHhhh-----------cCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE-
Q 023700 189 AIGAKMYGAFWCSHCLEQKQMFGSEAVK-----------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ- 254 (278)
Q Consensus 189 ~~gakmYGA~WCpHC~~qK~lFgkeA~~-----------~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk- 254 (278)
...+++|+|+||+||++++|.|.+.+.+ .+.+|||+.+ .++|++++|++|||+++ ||+
T Consensus 19 ~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~--------~~l~~~~~v~~~Ptl~~~~~g~~ 90 (108)
T cd02996 19 ELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE--------SDIADRYRINKYPTLKLFRNGMM 90 (108)
T ss_pred CEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--------HHHHHhCCCCcCCEEEEEeCCcC
Confidence 3457789999999999999999764321 2357899753 48999999999999987 775
Q ss_pred ---EecCCCCHHHHHHHh
Q 023700 255 ---VLSGEQDLSDLAKAS 269 (278)
Q Consensus 255 ---~y~G~rsle~La~~s 269 (278)
+|.|.|+.++|.+|.
T Consensus 91 ~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 91 MKREYRGQRSVEALAEFV 108 (108)
T ss_pred cceecCCCCCHHHHHhhC
Confidence 689999999999873
No 5
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.48 E-value=1.2e-13 Score=107.12 Aligned_cols=74 Identities=18% Similarity=0.307 Sum_probs=59.5
Q ss_pred cccceEEEccCCCHHHHHHHHhhhhHhhh-----cCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CC-E---Ee
Q 023700 188 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG-Q---VL 256 (278)
Q Consensus 188 ~~~gakmYGA~WCpHC~~qK~lFgkeA~~-----~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nG-k---~y 256 (278)
...-+++|+|+||+||++++|.|.+.+.+ .+..|||+.+ .++|++++|++|||+++ +| + +|
T Consensus 19 ~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~--------~~~~~~~~i~~~Pt~~~~~~g~~~~~~~ 90 (104)
T cd03004 19 KEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKY--------ESLCQQANIRAYPTIRLYPGNASKYHSY 90 (104)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCch--------HHHHHHcCCCcccEEEEEcCCCCCceEc
Confidence 33568889999999999999999885422 2457888743 58999999999999887 55 4 79
Q ss_pred cCCCC-HHHHHHHh
Q 023700 257 SGEQD-LSDLAKAS 269 (278)
Q Consensus 257 ~G~rs-le~La~~s 269 (278)
.|.++ .++|.+|.
T Consensus 91 ~G~~~~~~~l~~~i 104 (104)
T cd03004 91 NGWHRDADSILEFI 104 (104)
T ss_pred cCCCCCHHHHHhhC
Confidence 99987 99998873
No 6
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.46 E-value=2.1e-13 Score=105.18 Aligned_cols=76 Identities=18% Similarity=0.240 Sum_probs=61.0
Q ss_pred hhcccceEEEccCCCHHHHHHHHhhhhHh--hh--c--CcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE--E
Q 023700 186 HLHAIGAKMYGAFWCSHCLEQKQMFGSEA--VK--Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--V 255 (278)
Q Consensus 186 hL~~~gakmYGA~WCpHC~~qK~lFgkeA--~~--~--l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk--~ 255 (278)
.++..-+++|+|+||+||++++|.|.+.+ .+ . +..|||+.+ .++|++++|++|||.++ +|+ +
T Consensus 14 ~~~~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~--------~~~~~~~~i~~~Pt~~~~~~g~~~~ 85 (101)
T cd02994 14 VLEGEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQE--------PGLSGRFFVTALPTIYHAKDGVFRR 85 (101)
T ss_pred HhCCCEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCC--------HhHHHHcCCcccCEEEEeCCCCEEE
Confidence 34445688999999999999999998743 22 1 357888743 48999999999999887 776 6
Q ss_pred ecCCCCHHHHHHHh
Q 023700 256 LSGEQDLSDLAKAS 269 (278)
Q Consensus 256 y~G~rsle~La~~s 269 (278)
|.|.++.++|.++.
T Consensus 86 ~~G~~~~~~l~~~i 99 (101)
T cd02994 86 YQGPRDKEDLISFI 99 (101)
T ss_pred ecCCCCHHHHHHHH
Confidence 99999999999875
No 7
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.46 E-value=4.4e-13 Score=101.48 Aligned_cols=84 Identities=20% Similarity=0.368 Sum_probs=65.3
Q ss_pred CHHHHHHHhhhcccceEEEccCCCHHHHHHHHhhhhHh--hh-cCc--EEEccCCCCCCCcccHHhhhhcCCcccceeEE
Q 023700 177 SPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--VK-QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI 251 (278)
Q Consensus 177 ~~~~~aLAkhL~~~gakmYGA~WCpHC~~qK~lFgkeA--~~-~l~--yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i 251 (278)
..++..+.+ -.+..+++|+++||+||+++++.|.+.+ +. .+. .|||+. ..++|++++|+++||+++
T Consensus 7 ~~f~~~i~~-~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~--------~~~l~~~~~v~~~Pt~~~ 77 (103)
T PF00085_consen 7 ENFEKFINE-SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDE--------NKELCKKYGVKSVPTIIF 77 (103)
T ss_dssp TTHHHHHTT-TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTT--------SHHHHHHTTCSSSSEEEE
T ss_pred HHHHHHHHc-cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhc--------cchhhhccCCCCCCEEEE
Confidence 334444544 2456688999999999999999998843 22 333 677763 259999999999999887
Q ss_pred --CCE---EecCCCCHHHHHHHh
Q 023700 252 --NGQ---VLSGEQDLSDLAKAS 269 (278)
Q Consensus 252 --nGk---~y~G~rsle~La~~s 269 (278)
+|+ +|.|.++.++|.++.
T Consensus 78 ~~~g~~~~~~~g~~~~~~l~~~i 100 (103)
T PF00085_consen 78 FKNGKEVKRYNGPRNAESLIEFI 100 (103)
T ss_dssp EETTEEEEEEESSSSHHHHHHHH
T ss_pred EECCcEEEEEECCCCHHHHHHHH
Confidence 776 799999999999875
No 8
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.46 E-value=2.2e-13 Score=105.69 Aligned_cols=85 Identities=22% Similarity=0.411 Sum_probs=63.6
Q ss_pred HHHHHHHhhhcccceEEEccCCCHHHHHHHHhhhhHhh--h---cCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE-
Q 023700 178 PFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV--K---QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI- 251 (278)
Q Consensus 178 ~~~~aLAkhL~~~gakmYGA~WCpHC~~qK~lFgkeA~--~---~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i- 251 (278)
..+..+.++ ....+++|+|+||+||+++++.|.+.+. . .+..|+|+.+. ..++|++++|++|||+++
T Consensus 9 ~~~~~i~~~-~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~------~~~~~~~~~i~~~Pt~~~~ 81 (109)
T cd03002 9 NFDKVVHNT-NYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK------NKPLCGKYGVQGFPTLKVF 81 (109)
T ss_pred hHHHHHhcC-CCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc------cHHHHHHcCCCcCCEEEEE
Confidence 344444333 3446788999999999999999987532 1 23468888642 358999999999999887
Q ss_pred -CCE--------EecCCCCHHHHHHHh
Q 023700 252 -NGQ--------VLSGEQDLSDLAKAS 269 (278)
Q Consensus 252 -nGk--------~y~G~rsle~La~~s 269 (278)
+|+ +|.|.++.++|.+|.
T Consensus 82 ~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 82 RPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred eCCCcccccccccccCccCHHHHHHHh
Confidence 442 699999999999875
No 9
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=4.6e-14 Score=140.45 Aligned_cols=87 Identities=22% Similarity=0.392 Sum_probs=68.6
Q ss_pred CCHHHHHHHhhhcccceEEEccCCCHHHHHHHHhhhhHhh--------hcCcEEEccCCCCCCCcccHHhhhhcCCcccc
Q 023700 176 SSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV--------KQLNYVECFPDGYRKGTKIAKACSDAKIEGFP 247 (278)
Q Consensus 176 S~~~~~aLAkhL~~~gakmYGA~WCpHC~~qK~lFgkeA~--------~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyP 247 (278)
.+.++..+..| ..-+++||||||+||+++.|.|.+.|- ..+..|||+.+ .++|.+++|+|||
T Consensus 32 ~dnf~~~i~~~--~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~--------~~~~~~y~v~gyP 101 (493)
T KOG0190|consen 32 KDNFKETINGH--EFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE--------SDLASKYEVRGYP 101 (493)
T ss_pred cccHHHHhccC--ceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh--------hhhHhhhcCCCCC
Confidence 34444444333 444788889999999999999998542 12679999975 3999999999999
Q ss_pred eeEE--CCE---EecCCCCHHHHHHHhCCC
Q 023700 248 TWVI--NGQ---VLSGEQDLSDLAKASGFP 272 (278)
Q Consensus 248 Tw~i--nGk---~y~G~rsle~La~~sG~~ 272 (278)
|+.| ||+ .|.|.|+.|.+..|+--+
T Consensus 102 TlkiFrnG~~~~~Y~G~r~adgIv~wl~kq 131 (493)
T KOG0190|consen 102 TLKIFRNGRSAQDYNGPREADGIVKWLKKQ 131 (493)
T ss_pred eEEEEecCCcceeccCcccHHHHHHHHHhc
Confidence 9998 876 699999999999998543
No 10
>PRK14889 VKOR family protein; Provisional
Probab=99.45 E-value=4.9e-13 Score=113.70 Aligned_cols=60 Identities=28% Similarity=0.531 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh--hcCCCccCCCC-CCCccccccchhhhhcCcchhHHHHHHHh
Q 023700 65 WCAGIGGVGFLETTYLSYLK--LTNSDAFCPIG-GASCGDVLNSDYAVVFGVPLPFIGMFAYG 124 (278)
Q Consensus 65 ~i~~la~iGll~t~yLt~~k--l~~~~~~C~i~-~~gC~~Vl~S~ya~vfGiPlsl~Gl~aY~ 124 (278)
++++++++|+++|.|++++| .+++++.|++| ..||++|++||||++||+||+++|+++|.
T Consensus 11 ll~~~~~iGl~~S~~l~~~~~~~~~~~~~C~~~~~~~C~~Vl~S~~a~~fGiP~s~lGl~~f~ 73 (143)
T PRK14889 11 LLLAFSLVGLIASIASYLLFTLLVKPPPFCTINSVINCSSVLSSPYARFLGIPLDYLGAAWFS 73 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHhcCccHHHcCCchHHHHHHHHH
Confidence 56789999999999999887 45678999998 46999999999999999999999999997
No 11
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.44 E-value=4.5e-13 Score=105.74 Aligned_cols=75 Identities=20% Similarity=0.309 Sum_probs=58.6
Q ss_pred ccceEEEccCCCHHHHHHHHhhhhHh--hhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE--EecCCCCH
Q 023700 189 AIGAKMYGAFWCSHCLEQKQMFGSEA--VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--VLSGEQDL 262 (278)
Q Consensus 189 ~~gakmYGA~WCpHC~~qK~lFgkeA--~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk--~y~G~rsl 262 (278)
+.-++.|+|+||+||++++|.|.+.+ +..+.++.++.+.. ..++|++++|++|||.++ +|+ +|.|.++.
T Consensus 19 ~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~-----~~~l~~~~~V~~~PT~~lf~~g~~~~~~G~~~~ 93 (100)
T cd02999 19 DYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSI-----KPSLLSRYGVVGFPTILLFNSTPRVRYNGTRTL 93 (100)
T ss_pred CEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCC-----CHHHHHhcCCeecCEEEEEcCCceeEecCCCCH
Confidence 34578899999999999999998843 34455555543311 358999999999999887 554 79999999
Q ss_pred HHHHHH
Q 023700 263 SDLAKA 268 (278)
Q Consensus 263 e~La~~ 268 (278)
++|.+|
T Consensus 94 ~~l~~f 99 (100)
T cd02999 94 DSLAAF 99 (100)
T ss_pred HHHHhh
Confidence 999886
No 12
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.43 E-value=6.6e-13 Score=101.28 Aligned_cols=74 Identities=19% Similarity=0.179 Sum_probs=59.8
Q ss_pred cccceEEEccCCCHHHHHHHHhhhhHh--hh-c--CcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE---Eec
Q 023700 188 HAIGAKMYGAFWCSHCLEQKQMFGSEA--VK-Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLS 257 (278)
Q Consensus 188 ~~~gakmYGA~WCpHC~~qK~lFgkeA--~~-~--l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk---~y~ 257 (278)
.+.-++.|+|+||+||+.+++.|.+-+ +. . +..|||+.+ .++|++++|+++||+++ +|+ ++.
T Consensus 12 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~--------~~l~~~~~i~~~Pt~~~~~~g~~~~~~~ 83 (96)
T cd02956 12 QVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQ--------PQIAQQFGVQALPTVYLFAAGQPVDGFQ 83 (96)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCC--------HHHHHHcCCCCCCEEEEEeCCEEeeeec
Confidence 345678899999999999999997743 21 2 346777653 58999999999999887 886 689
Q ss_pred CCCCHHHHHHHh
Q 023700 258 GEQDLSDLAKAS 269 (278)
Q Consensus 258 G~rsle~La~~s 269 (278)
|.++.++|.++.
T Consensus 84 g~~~~~~l~~~l 95 (96)
T cd02956 84 GAQPEEQLRQML 95 (96)
T ss_pred CCCCHHHHHHHh
Confidence 999999999875
No 13
>PF07884 VKOR: Vitamin K epoxide reductase family; InterPro: IPR012932 Vitamin K epoxide reductase (VKOR) recycles reduced vitamin K, which is used subsequently as a co-factor in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. VKORC1 is a member of a large family of predicted enzymes that are present in vertebrates, Drosophila, plants, bacteria and archaea []. Four cysteine residues and one residue, which is either serine or threonine, are identified as likely active-site residues []. In some plant and bacterial homologues the VKORC1 homologous domain is fused with domains of the thioredoxin family of oxidoreductases []. ; PDB: 3KP9_A.
Probab=99.42 E-value=2.5e-13 Score=112.90 Aligned_cols=61 Identities=38% Similarity=0.741 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCCC----ccCCCC-CCCccccccchhhhhcCcchhHHHHHHHh
Q 023700 64 GWCAGIGGVGFLETTYLSYLKLTNSD----AFCPIG-GASCGDVLNSDYAVVFGVPLPFIGMFAYG 124 (278)
Q Consensus 64 ~~i~~la~iGll~t~yLt~~kl~~~~----~~C~i~-~~gC~~Vl~S~ya~vfGiPlsl~Gl~aY~ 124 (278)
.++.+++++|++++.||++++++... ..|+++ ..+|++|++||||++||+|++++|+++|+
T Consensus 3 ~~~~~l~liGl~~s~~l~~~~~~~~~~~~~~~C~~~~~~~C~~Vl~S~~a~~~Gip~a~~G~~~f~ 68 (137)
T PF07884_consen 3 ILLLALSLIGLLVSIYLLYVEMGLSRPGYSPFCDIGPRISCDAVLNSPYAKIFGIPLALLGLAFFA 68 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------S-----------SGGGSSSSEETTEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCccccCCCCcccCCCHHHHhhccchhhccCCchHHHHHHHH
Confidence 46779999999999999999997554 999987 67999999999999999999999999998
No 14
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.39 E-value=6.8e-13 Score=101.31 Aligned_cols=72 Identities=25% Similarity=0.556 Sum_probs=57.9
Q ss_pred cceEEEccCCCHHHHHHHHhhhhHh--hh----c--CcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE---Ee
Q 023700 190 IGAKMYGAFWCSHCLEQKQMFGSEA--VK----Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VL 256 (278)
Q Consensus 190 ~gakmYGA~WCpHC~~qK~lFgkeA--~~----~--l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk---~y 256 (278)
..+++|+|+||+||++++|.|.+.+ ++ + +..|||+.+ .++|++++|+++||+++ +|+ +|
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~~Pt~~~~~~g~~~~~~ 89 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH--------RELCSEFQVRGYPTLLLFKDGEKVDKY 89 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC--------hhhHhhcCCCcCCEEEEEeCCCeeeEe
Confidence 3677899999999999999987742 21 2 347888753 48899999999999887 775 69
Q ss_pred cCCCCHHHHHHHh
Q 023700 257 SGEQDLSDLAKAS 269 (278)
Q Consensus 257 ~G~rsle~La~~s 269 (278)
.|.++.++|.++.
T Consensus 90 ~G~~~~~~l~~~i 102 (102)
T cd03005 90 KGTRDLDSLKEFV 102 (102)
T ss_pred eCCCCHHHHHhhC
Confidence 9999999998863
No 15
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.36 E-value=2.7e-12 Score=101.68 Aligned_cols=75 Identities=15% Similarity=0.274 Sum_probs=57.5
Q ss_pred cccceEEEccCCCHHHHHHHHhhhhHh--hh--c--CcEEEccCCCCCCCcccHHhhhh-cCCcccceeEE--CC----E
Q 023700 188 HAIGAKMYGAFWCSHCLEQKQMFGSEA--VK--Q--LNYVECFPDGYRKGTKIAKACSD-AKIEGFPTWVI--NG----Q 254 (278)
Q Consensus 188 ~~~gakmYGA~WCpHC~~qK~lFgkeA--~~--~--l~yVEC~~dg~n~~~k~~~lC~~-~~V~GyPTw~i--nG----k 254 (278)
.+..+++|+|+|||||+++++.|.+.+ ++ . +..|+|+.+ ..++|++ ++|++|||+++ +| .
T Consensus 21 ~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~-------~~~~~~~~~~v~~~Pti~~f~~~~~~~~ 93 (109)
T cd02993 21 NQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE-------QREFAKEELQLKSFPTILFFPKNSRQPI 93 (109)
T ss_pred CCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc-------chhhHHhhcCCCcCCEEEEEcCCCCCce
Confidence 346788999999999999999998743 22 1 346788753 1377875 89999999886 43 2
Q ss_pred EecCC-CCHHHHHHHh
Q 023700 255 VLSGE-QDLSDLAKAS 269 (278)
Q Consensus 255 ~y~G~-rsle~La~~s 269 (278)
.|.|. |+.++|.+|.
T Consensus 94 ~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 94 KYPSEQRDVDSLLMFV 109 (109)
T ss_pred eccCCCCCHHHHHhhC
Confidence 79995 9999998873
No 16
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.36 E-value=2.5e-12 Score=98.30 Aligned_cols=74 Identities=19% Similarity=0.353 Sum_probs=58.5
Q ss_pred cccceEEEccCCCHHHHHHHHhhhhHh--h-hc--CcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE----Ee
Q 023700 188 HAIGAKMYGAFWCSHCLEQKQMFGSEA--V-KQ--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ----VL 256 (278)
Q Consensus 188 ~~~gakmYGA~WCpHC~~qK~lFgkeA--~-~~--l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk----~y 256 (278)
+...+++|+|+||+||+++++.|.+-+ + .. +..+||+.+ .++|++++|+++||.++ +|+ +|
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~--------~~~~~~~~i~~~P~~~~~~~~~~~~~~~ 89 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVH--------QSLAQQYGVRGFPTIKVFGAGKNSPQDY 89 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcch--------HHHHHHCCCCccCEEEEECCCCcceeec
Confidence 344677888999999999999997743 2 12 356777642 48999999999999877 562 69
Q ss_pred cCCCCHHHHHHHh
Q 023700 257 SGEQDLSDLAKAS 269 (278)
Q Consensus 257 ~G~rsle~La~~s 269 (278)
.|.++.++|.+|.
T Consensus 90 ~g~~~~~~l~~~~ 102 (103)
T cd03001 90 QGGRTAKAIVSAA 102 (103)
T ss_pred CCCCCHHHHHHHh
Confidence 9999999999874
No 17
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.36 E-value=2.8e-12 Score=94.75 Aligned_cols=74 Identities=18% Similarity=0.216 Sum_probs=57.7
Q ss_pred ceEEEccCCCHHHHHHHHhhhhHh--hh-cCcEEEccCCCCCCCcccHHhhhhcCCcccceeEECCE-EecCCCCHHHHH
Q 023700 191 GAKMYGAFWCSHCLEQKQMFGSEA--VK-QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ-VLSGEQDLSDLA 266 (278)
Q Consensus 191 gakmYGA~WCpHC~~qK~lFgkeA--~~-~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inGk-~y~G~rsle~La 266 (278)
.+++|+++|||||+++++.+.+.+ +. ++.+++.+-+. ..+++++++|+++||+++||+ ++.|.++.++|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~------~~~~~~~~~v~~vPt~~~~g~~~~~G~~~~~~l~ 75 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVME------NPQKAMEYGIMAVPAIVINGDVEFIGAPTKEELV 75 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCcc------CHHHHHHcCCccCCEEEECCEEEEecCCCHHHHH
Confidence 467899999999999999998743 22 24443433221 358899999999999999988 889999999998
Q ss_pred HHhC
Q 023700 267 KASG 270 (278)
Q Consensus 267 ~~sG 270 (278)
++..
T Consensus 76 ~~l~ 79 (82)
T TIGR00411 76 EAIK 79 (82)
T ss_pred HHHH
Confidence 8753
No 18
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.34 E-value=2.6e-12 Score=106.29 Aligned_cols=80 Identities=11% Similarity=0.042 Sum_probs=63.1
Q ss_pred ccceEEEcc--CCCH---HHHHHHHhhhhHhh-hcCcEEEccCCCCCCCcccHHhhhhcCCc--ccceeEE--CCE----
Q 023700 189 AIGAKMYGA--FWCS---HCLEQKQMFGSEAV-KQLNYVECFPDGYRKGTKIAKACSDAKIE--GFPTWVI--NGQ---- 254 (278)
Q Consensus 189 ~~gakmYGA--~WCp---HC~~qK~lFgkeA~-~~l~yVEC~~dg~n~~~k~~~lC~~~~V~--GyPTw~i--nGk---- 254 (278)
...+++|+| |||+ ||+++.+.|.+.+. ..|..|+|+..+. +...+||++++|+ ||||+++ ||+
T Consensus 19 ~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~---~~~~~L~~~y~I~~~gyPTl~lF~~g~~~~~ 95 (116)
T cd03007 19 KYSLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGE---KLNMELGERYKLDKESYPVIYLFHGGDFENP 95 (116)
T ss_pred CcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccc---hhhHHHHHHhCCCcCCCCEEEEEeCCCcCCC
Confidence 345778889 9999 99999999987432 3478999964331 1246999999999 9999887 773
Q ss_pred -EecCC-CCHHHHHHHhCC
Q 023700 255 -VLSGE-QDLSDLAKASGF 271 (278)
Q Consensus 255 -~y~G~-rsle~La~~sG~ 271 (278)
.|+|. |+.++|.+|..-
T Consensus 96 ~~Y~G~~r~~~~lv~~v~~ 114 (116)
T cd03007 96 VPYSGADVTVDALQRFLKG 114 (116)
T ss_pred ccCCCCcccHHHHHHHHHh
Confidence 69997 999999998754
No 19
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.32 E-value=3.3e-12 Score=102.01 Aligned_cols=75 Identities=12% Similarity=0.160 Sum_probs=59.8
Q ss_pred cccceEEEccCCCHHHHHHHHhhhhHh--hh--c--CcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE---Ee
Q 023700 188 HAIGAKMYGAFWCSHCLEQKQMFGSEA--VK--Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VL 256 (278)
Q Consensus 188 ~~~gakmYGA~WCpHC~~qK~lFgkeA--~~--~--l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk---~y 256 (278)
....+++|+|+||+||+.++|.|.+.+ +. + +..|||+.+ .++|++++|++|||+++ +|+ ++
T Consensus 24 ~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~--------~~l~~~~~V~~~Pt~~i~~~g~~~~~~ 95 (111)
T cd02963 24 KKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE--------RRLARKLGAHSVPAIVGIINGQVTFYH 95 (111)
T ss_pred CCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc--------HHHHHHcCCccCCEEEEEECCEEEEEe
Confidence 356688899999999999999987732 22 2 347787643 48899999999999887 887 56
Q ss_pred cCCCCHHHHHHHhC
Q 023700 257 SGEQDLSDLAKASG 270 (278)
Q Consensus 257 ~G~rsle~La~~sG 270 (278)
.|.++.++|.++..
T Consensus 96 ~G~~~~~~l~~~i~ 109 (111)
T cd02963 96 DSSFTKQHVVDFVR 109 (111)
T ss_pred cCCCCHHHHHHHHh
Confidence 89999999998753
No 20
>PHA02278 thioredoxin-like protein
Probab=99.31 E-value=1.3e-11 Score=99.05 Aligned_cols=77 Identities=14% Similarity=0.048 Sum_probs=59.4
Q ss_pred ccceEEEccCCCHHHHHHHHhhhhHhhh---c--CcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE---EecC
Q 023700 189 AIGAKMYGAFWCSHCLEQKQMFGSEAVK---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSG 258 (278)
Q Consensus 189 ~~gakmYGA~WCpHC~~qK~lFgkeA~~---~--l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk---~y~G 258 (278)
...++.|+|+||++|+.++|.|.+.+.+ + +.+||++.+. +. ..+++++++|++.||+++ ||+ ++.|
T Consensus 15 ~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~-~d---~~~l~~~~~I~~iPT~i~fk~G~~v~~~~G 90 (103)
T PHA02278 15 KDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAED-VD---REKAVKLFDIMSTPVLIGYKDGQLVKKYED 90 (103)
T ss_pred CcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccc-cc---cHHHHHHCCCccccEEEEEECCEEEEEEeC
Confidence 3457889999999999999999884322 2 4456666431 11 257999999999999988 888 6899
Q ss_pred CCCHHHHHHHh
Q 023700 259 EQDLSDLAKAS 269 (278)
Q Consensus 259 ~rsle~La~~s 269 (278)
..+.++|.++-
T Consensus 91 ~~~~~~l~~~~ 101 (103)
T PHA02278 91 QVTPMQLQELE 101 (103)
T ss_pred CCCHHHHHhhh
Confidence 99999998874
No 21
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.30 E-value=6.2e-12 Score=98.27 Aligned_cols=75 Identities=17% Similarity=0.376 Sum_probs=58.8
Q ss_pred cccceEEEccCCCHHHHHHHHhhhhHh--hh--c----CcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE--E
Q 023700 188 HAIGAKMYGAFWCSHCLEQKQMFGSEA--VK--Q----LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--V 255 (278)
Q Consensus 188 ~~~gakmYGA~WCpHC~~qK~lFgkeA--~~--~----l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk--~ 255 (278)
+..-+++|+|+|||+|+++++.|.+.+ ++ . +..+||+. ..++|++++|+++||+++ +|. +
T Consensus 15 ~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~--------~~~~~~~~~I~~~Pt~~l~~~~~~~~ 86 (104)
T cd03000 15 EDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA--------YSSIASEFGVRGYPTIKLLKGDLAYN 86 (104)
T ss_pred CCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc--------CHhHHhhcCCccccEEEEEcCCCcee
Confidence 345678899999999999999998743 21 1 23678864 358899999999999887 443 6
Q ss_pred ecCCCCHHHHHHHhC
Q 023700 256 LSGEQDLSDLAKASG 270 (278)
Q Consensus 256 y~G~rsle~La~~sG 270 (278)
|.|.++.++|.++..
T Consensus 87 ~~G~~~~~~l~~~~~ 101 (104)
T cd03000 87 YRGPRTKDDIVEFAN 101 (104)
T ss_pred ecCCCCHHHHHHHHH
Confidence 999999999998763
No 22
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.30 E-value=1.7e-11 Score=111.16 Aligned_cols=73 Identities=22% Similarity=0.395 Sum_probs=58.0
Q ss_pred ccceEEEccCCCHHHHHHHHhhhhHh--hh---cCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE---EecC
Q 023700 189 AIGAKMYGAFWCSHCLEQKQMFGSEA--VK---QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSG 258 (278)
Q Consensus 189 ~~gakmYGA~WCpHC~~qK~lFgkeA--~~---~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk---~y~G 258 (278)
..-+++|+|+||+||++++|.|.+.+ ++ .+..|||+.+ .++|++++|++|||.++ ||+ .+.|
T Consensus 53 ~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~--------~~l~~~~~I~~~PTl~~f~~G~~v~~~~G 124 (224)
T PTZ00443 53 GPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRA--------LNLAKRFAIKGYPTLLLFDKGKMYQYEGG 124 (224)
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCccc--------HHHHHHcCCCcCCEEEEEECCEEEEeeCC
Confidence 45678899999999999999998743 22 1345777643 58999999999999887 887 3468
Q ss_pred CCCHHHHHHHh
Q 023700 259 EQDLSDLAKAS 269 (278)
Q Consensus 259 ~rsle~La~~s 269 (278)
.++.++|.++.
T Consensus 125 ~~s~e~L~~fi 135 (224)
T PTZ00443 125 DRSTEKLAAFA 135 (224)
T ss_pred CCCHHHHHHHH
Confidence 89999999873
No 23
>PHA02125 thioredoxin-like protein
Probab=99.30 E-value=1.1e-11 Score=93.04 Aligned_cols=69 Identities=26% Similarity=0.533 Sum_probs=54.3
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEECCE---EecCC-CCHHHHHH
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ---VLSGE-QDLSDLAK 267 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inGk---~y~G~-rsle~La~ 267 (278)
+++|+|+||+||+.+++.|.+.+ +.+++.+.+. ..+++++++|+++||++ +|+ ++.|. +++.+|.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~---~~~~~vd~~~------~~~l~~~~~v~~~PT~~-~g~~~~~~~G~~~~~~~l~~ 71 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE---YTYVDVDTDE------GVELTAKHHIRSLPTLV-NTSTLDRFTGVPRNVAELKE 71 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh---heEEeeeCCC------CHHHHHHcCCceeCeEE-CCEEEEEEeCCCCcHHHHHH
Confidence 67899999999999999997643 3355554332 36899999999999987 775 57785 77899988
Q ss_pred HhC
Q 023700 268 ASG 270 (278)
Q Consensus 268 ~sG 270 (278)
.+|
T Consensus 72 ~~~ 74 (75)
T PHA02125 72 KLG 74 (75)
T ss_pred HhC
Confidence 776
No 24
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.29 E-value=7.1e-12 Score=95.44 Aligned_cols=75 Identities=24% Similarity=0.364 Sum_probs=58.3
Q ss_pred cccceEEEccCCCHHHHHHHHhhhhHh--hh---cC--cEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CC-E---
Q 023700 188 HAIGAKMYGAFWCSHCLEQKQMFGSEA--VK---QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG-Q--- 254 (278)
Q Consensus 188 ~~~gakmYGA~WCpHC~~qK~lFgkeA--~~---~l--~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nG-k--- 254 (278)
++..+++|+|+||+||+++++.|.+.+ ++ .+ ..+||+.+ ..++|++++|+++||+++ +| +
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-------~~~~~~~~~i~~~P~~~~~~~~~~~~~ 90 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA-------NKDLAKKYGVSGFPTLKFFPKGSTEPV 90 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc-------chhhHHhCCCCCcCEEEEEeCCCCCcc
Confidence 345688999999999999999998743 22 23 35777641 248999999999999987 44 3
Q ss_pred EecCCCCHHHHHHHh
Q 023700 255 VLSGEQDLSDLAKAS 269 (278)
Q Consensus 255 ~y~G~rsle~La~~s 269 (278)
+|.|.++.++|.+|.
T Consensus 91 ~~~g~~~~~~l~~~i 105 (105)
T cd02998 91 KYEGGRDLEDLVKFV 105 (105)
T ss_pred ccCCccCHHHHHhhC
Confidence 699999999999873
No 25
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.28 E-value=1.5e-11 Score=93.94 Aligned_cols=75 Identities=29% Similarity=0.519 Sum_probs=58.5
Q ss_pred ccceEEEccCCCHHHHHHHHhhhhHh--hh---c--CcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE---Ee
Q 023700 189 AIGAKMYGAFWCSHCLEQKQMFGSEA--VK---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VL 256 (278)
Q Consensus 189 ~~gakmYGA~WCpHC~~qK~lFgkeA--~~---~--l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk---~y 256 (278)
+.-++.|+|+||++|+++++.|.+.+ +. . +..|||+.+. ..++|++++|++|||+++ +|+ +|
T Consensus 18 ~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~------~~~~~~~~~i~~~Pt~~~~~~g~~~~~~ 91 (104)
T cd02997 18 KHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPE------HDALKEEYNVKGFPTFKYFENGKFVEKY 91 (104)
T ss_pred CCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCc------cHHHHHhCCCccccEEEEEeCCCeeEEe
Confidence 35578899999999999999887642 21 1 3357787531 358999999999999887 665 69
Q ss_pred cCCCCHHHHHHHh
Q 023700 257 SGEQDLSDLAKAS 269 (278)
Q Consensus 257 ~G~rsle~La~~s 269 (278)
.|.++.++|.+|.
T Consensus 92 ~g~~~~~~l~~~l 104 (104)
T cd02997 92 EGERTAEDIIEFM 104 (104)
T ss_pred CCCCCHHHHHhhC
Confidence 9999999998873
No 26
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.28 E-value=1.1e-11 Score=94.40 Aligned_cols=73 Identities=25% Similarity=0.459 Sum_probs=57.3
Q ss_pred cccceEEEccCCCHHHHHHHHhhhhHh--hh---cC--cEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE----
Q 023700 188 HAIGAKMYGAFWCSHCLEQKQMFGSEA--VK---QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---- 254 (278)
Q Consensus 188 ~~~gakmYGA~WCpHC~~qK~lFgkeA--~~---~l--~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk---- 254 (278)
.+..+++|+|+||+||+.+++.|.+.+ ++ .+ ..|||+.+ ++|.+++|++|||+.+ +|+
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~---------~~~~~~~~~~~Pt~~~~~~~~~~~~ 88 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN---------DVPSEFVVDGFPTILFFPAGDKSNP 88 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch---------hhhhhccCCCCCEEEEEcCCCcCCc
Confidence 345678899999999999999998743 22 23 46888642 5788899999999887 554
Q ss_pred -EecCCCCHHHHHHHh
Q 023700 255 -VLSGEQDLSDLAKAS 269 (278)
Q Consensus 255 -~y~G~rsle~La~~s 269 (278)
+|.|.++.++|.+|.
T Consensus 89 ~~~~g~~~~~~l~~fi 104 (104)
T cd02995 89 IKYEGDRTLEDLIKFI 104 (104)
T ss_pred eEccCCcCHHHHHhhC
Confidence 699999999998873
No 27
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.27 E-value=2.5e-11 Score=95.64 Aligned_cols=79 Identities=10% Similarity=0.117 Sum_probs=56.6
Q ss_pred cccceEEEccCCCHHHHHHHHhhhhHh--hhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE---EecCCC
Q 023700 188 HAIGAKMYGAFWCSHCLEQKQMFGSEA--VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQ 260 (278)
Q Consensus 188 ~~~gakmYGA~WCpHC~~qK~lFgkeA--~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk---~y~G~r 260 (278)
.+..++.|+|+||++|+.++|.|.+.+ +..+.++.++.|. +. +..+++++++|+++||+++ ||+ ++.|..
T Consensus 15 ~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~-~~--~~~~l~~~~~V~~~Pt~~~~~~G~~v~~~~G~~ 91 (103)
T cd02985 15 GRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDE-ND--STMELCRREKIIEVPHFLFYKDGEKIHEEEGIG 91 (103)
T ss_pred CCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCC-Ch--HHHHHHHHcCCCcCCEEEEEeCCeEEEEEeCCC
Confidence 456688999999999999999998743 3345444444332 11 1358999999999999887 887 688855
Q ss_pred CHHHHHHHhC
Q 023700 261 DLSDLAKASG 270 (278)
Q Consensus 261 sle~La~~sG 270 (278)
.++|.+..-
T Consensus 92 -~~~l~~~~~ 100 (103)
T cd02985 92 -PDELIGDVL 100 (103)
T ss_pred -HHHHHHHHH
Confidence 467765543
No 28
>PTZ00102 disulphide isomerase; Provisional
Probab=99.27 E-value=2.9e-11 Score=116.02 Aligned_cols=75 Identities=21% Similarity=0.367 Sum_probs=60.6
Q ss_pred ccceEEEccCCCHHHHHHHHhhhhHh--hh------cCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE--Ee
Q 023700 189 AIGAKMYGAFWCSHCLEQKQMFGSEA--VK------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--VL 256 (278)
Q Consensus 189 ~~gakmYGA~WCpHC~~qK~lFgkeA--~~------~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk--~y 256 (278)
+..+++|+|+||+||++++|.|.+.| .+ .+..|||+.+ .++|++++|++|||+++ +|+ +|
T Consensus 50 ~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~--------~~l~~~~~i~~~Pt~~~~~~g~~~~y 121 (477)
T PTZ00102 50 EIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE--------MELAQEFGVRGYPTIKFFNKGNPVNY 121 (477)
T ss_pred CcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC--------HHHHHhcCCCcccEEEEEECCceEEe
Confidence 45688899999999999999887743 11 1457888753 58999999999999887 664 69
Q ss_pred cCCCCHHHHHHHhCC
Q 023700 257 SGEQDLSDLAKASGF 271 (278)
Q Consensus 257 ~G~rsle~La~~sG~ 271 (278)
.|.++.++|.+|...
T Consensus 122 ~g~~~~~~l~~~l~~ 136 (477)
T PTZ00102 122 SGGRTADGIVSWIKK 136 (477)
T ss_pred cCCCCHHHHHHHHHH
Confidence 999999999988653
No 29
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.23 E-value=2.9e-11 Score=97.48 Aligned_cols=73 Identities=23% Similarity=0.488 Sum_probs=55.6
Q ss_pred ccceEEEccCCCHHHHHHHHhhhhHh--hh------cCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--C------
Q 023700 189 AIGAKMYGAFWCSHCLEQKQMFGSEA--VK------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--N------ 252 (278)
Q Consensus 189 ~~gakmYGA~WCpHC~~qK~lFgkeA--~~------~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--n------ 252 (278)
+.-+++|+|+||++|+.+++.|.+-+ ++ .+..|||+.+. ..++|++++|++|||+++ +
T Consensus 20 ~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~------~~~~~~~~~i~~~Pt~~lf~~~~~~~~ 93 (114)
T cd02992 20 SAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE------NVALCRDFGVTGYPTLRYFPPFSKEAT 93 (114)
T ss_pred CeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh------hHHHHHhCCCCCCCEEEEECCCCccCC
Confidence 45678899999999999999998743 22 13568887542 358999999999999987 3
Q ss_pred -CEEecCC-CCHHHHHH
Q 023700 253 -GQVLSGE-QDLSDLAK 267 (278)
Q Consensus 253 -Gk~y~G~-rsle~La~ 267 (278)
|.+|.|. |..+++.+
T Consensus 94 ~~~~~~~~~~~~~~~~~ 110 (114)
T cd02992 94 DGLKQEGPERDVNELRE 110 (114)
T ss_pred CCCcccCCccCHHHHHH
Confidence 4567777 88888754
No 30
>PRK09381 trxA thioredoxin; Provisional
Probab=99.23 E-value=5.6e-11 Score=93.00 Aligned_cols=74 Identities=18% Similarity=0.265 Sum_probs=59.2
Q ss_pred cccceEEEccCCCHHHHHHHHhhhhHhhh-----cCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE---Eec
Q 023700 188 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLS 257 (278)
Q Consensus 188 ~~~gakmYGA~WCpHC~~qK~lFgkeA~~-----~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk---~y~ 257 (278)
....+++|+|+|||+|+.+++.|.+.+.+ .+..|+|+.+ ..++++++|+++||+++ +|+ ++.
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~~Pt~~~~~~G~~~~~~~ 92 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN--------PGTAPKYGIRGIPTLLLFKNGEVAATKV 92 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCC--------hhHHHhCCCCcCCEEEEEeCCeEEEEec
Confidence 34567889999999999999999874321 2457888643 47899999999999988 887 578
Q ss_pred CCCCHHHHHHHh
Q 023700 258 GEQDLSDLAKAS 269 (278)
Q Consensus 258 G~rsle~La~~s 269 (278)
|..+.++|.++.
T Consensus 93 G~~~~~~l~~~i 104 (109)
T PRK09381 93 GALSKGQLKEFL 104 (109)
T ss_pred CCCCHHHHHHHH
Confidence 999999998775
No 31
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.21 E-value=8.4e-11 Score=92.27 Aligned_cols=72 Identities=18% Similarity=0.274 Sum_probs=54.0
Q ss_pred cccceEEEccCCCHHHHHHHHhhhhHh--hh--c--CcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE---Ee
Q 023700 188 HAIGAKMYGAFWCSHCLEQKQMFGSEA--VK--Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VL 256 (278)
Q Consensus 188 ~~~gakmYGA~WCpHC~~qK~lFgkeA--~~--~--l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk---~y 256 (278)
.+..+++|+|+||+||+.+.+.|.+-+ ++ . +..||++ + .+++++++|+++||+++ ||+ +.
T Consensus 17 ~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~--------~~~~~~~~v~~~Pt~~~~~~g~~~~~~ 87 (102)
T cd02948 17 KGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-T--------IDTLKRYRGKCEPTFLFYKNGELVAVI 87 (102)
T ss_pred CCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-C--------HHHHHHcCCCcCcEEEEEECCEEEEEE
Confidence 445577899999999999999997732 32 1 3345554 2 37899999999999888 887 57
Q ss_pred cCCCCHHHHHHHh
Q 023700 257 SGEQDLSDLAKAS 269 (278)
Q Consensus 257 ~G~rsle~La~~s 269 (278)
.|. +.++|.++.
T Consensus 88 ~G~-~~~~~~~~i 99 (102)
T cd02948 88 RGA-NAPLLNKTI 99 (102)
T ss_pred ecC-ChHHHHHHH
Confidence 775 778887764
No 32
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.18 E-value=6.3e-11 Score=84.41 Aligned_cols=72 Identities=21% Similarity=0.368 Sum_probs=54.7
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEECCEEecCCCCHHHHHHHh
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKAS 269 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inGk~y~G~rsle~La~~s 269 (278)
+++|+++|||+|+++++.|.+. .+.|.+++-+. +. ....++++..++.++||++++|+.+.|. +.++|.++.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~---~i~~~~vdi~~-~~-~~~~~~~~~~~~~~vP~~~~~~~~~~g~-~~~~i~~~i 73 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK---GIAFEEIDVEK-DS-AAREEVLKVLGQRGVPVIVIGHKIIVGF-DPEKLDQLL 73 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC---CCeEEEEeccC-CH-HHHHHHHHHhCCCcccEEEECCEEEeeC-CHHHHHHHh
Confidence 6799999999999999999763 45554444332 11 1134578889999999999999999886 678988875
No 33
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.17 E-value=1.9e-10 Score=83.37 Aligned_cols=79 Identities=15% Similarity=0.271 Sum_probs=61.5
Q ss_pred HHHHhhhcccceEEEccCCCHHHHHHHHhhhhHhh--hcCc--EEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE
Q 023700 181 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV--KQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ 254 (278)
Q Consensus 181 ~aLAkhL~~~gakmYGA~WCpHC~~qK~lFgkeA~--~~l~--yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk 254 (278)
.++.++ ...+++|+++||++|+++++.+.+-+. .++. +|+|+.+ .+++++++|.++||+++ +|+
T Consensus 5 ~~~~~~--~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 5 ELIKSA--KPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDEN--------PELAEEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred HHHhcC--CcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCC--------hhHHHhcCcccccEEEEEECCE
Confidence 344444 566889999999999999999987432 3344 5666542 48899999999999998 776
Q ss_pred ---EecCCCCHHHHHHHh
Q 023700 255 ---VLSGEQDLSDLAKAS 269 (278)
Q Consensus 255 ---~y~G~rsle~La~~s 269 (278)
.+.|..+.++|.++.
T Consensus 75 ~~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 75 EVDRVVGADPKEELEEFL 92 (93)
T ss_pred EEEEEecCCCHHHHHHHh
Confidence 689999989998874
No 34
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.15 E-value=1.1e-10 Score=98.00 Aligned_cols=81 Identities=20% Similarity=0.219 Sum_probs=59.2
Q ss_pred HhhhcccceEEEccCCCHHHHHHHHhhhhHh--hh-cCc--EEEccCCCCCCCcccHHhhhhcCCcccceeEE---CCE-
Q 023700 184 AKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--VK-QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI---NGQ- 254 (278)
Q Consensus 184 AkhL~~~gakmYGA~WCpHC~~qK~lFgkeA--~~-~l~--yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i---nGk- 254 (278)
|..-.+..+++|+|+||++|+.+++.|.+.+ +. .+. .|+.+.+. ..+++++++|+++||+++ ||+
T Consensus 16 a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~------~~~~~~~~~V~~iPt~v~~~~~G~~ 89 (142)
T cd02950 16 ALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK------WLPEIDRYRVDGIPHFVFLDREGNE 89 (142)
T ss_pred HHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc------cHHHHHHcCCCCCCEEEEECCCCCE
Confidence 3333456788999999999999999998743 22 234 44544321 357899999999999886 576
Q ss_pred --EecCCCCHHHHHHHhC
Q 023700 255 --VLSGEQDLSDLAKASG 270 (278)
Q Consensus 255 --~y~G~rsle~La~~sG 270 (278)
++.|..+.++|.++.-
T Consensus 90 v~~~~G~~~~~~l~~~l~ 107 (142)
T cd02950 90 EGQSIGLQPKQVLAQNLD 107 (142)
T ss_pred EEEEeCCCCHHHHHHHHH
Confidence 6899999888876653
No 35
>PRK10996 thioredoxin 2; Provisional
Probab=99.15 E-value=2e-10 Score=95.66 Aligned_cols=77 Identities=21% Similarity=0.342 Sum_probs=59.1
Q ss_pred cccceEEEccCCCHHHHHHHHhhhhHhh---hcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE---EecCC
Q 023700 188 HAIGAKMYGAFWCSHCLEQKQMFGSEAV---KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE 259 (278)
Q Consensus 188 ~~~gakmYGA~WCpHC~~qK~lFgkeA~---~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk---~y~G~ 259 (278)
.+..++.|+|+||++|+++++.|.+-+. ..+.++..+.+. ..+++++++|+++||+++ ||+ ++.|.
T Consensus 52 ~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~------~~~l~~~~~V~~~Ptlii~~~G~~v~~~~G~ 125 (139)
T PRK10996 52 DLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEA------ERELSARFRIRSIPTIMIFKNGQVVDMLNGA 125 (139)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCC------CHHHHHhcCCCccCEEEEEECCEEEEEEcCC
Confidence 4456788999999999999999987431 234444443331 358999999999999887 887 57999
Q ss_pred CCHHHHHHHhC
Q 023700 260 QDLSDLAKASG 270 (278)
Q Consensus 260 rsle~La~~sG 270 (278)
++.++|.++..
T Consensus 126 ~~~e~l~~~l~ 136 (139)
T PRK10996 126 VPKAPFDSWLN 136 (139)
T ss_pred CCHHHHHHHHH
Confidence 99999988763
No 36
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.14 E-value=2.8e-10 Score=86.48 Aligned_cols=75 Identities=24% Similarity=0.402 Sum_probs=56.4
Q ss_pred cccceEEEccCCCHHHHHHHHhhhhHhhh---cCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE---EecCC
Q 023700 188 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK---QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE 259 (278)
Q Consensus 188 ~~~gakmYGA~WCpHC~~qK~lFgkeA~~---~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk---~y~G~ 259 (278)
.+.-+++|+|+||++|+++++.|.+.+.+ .+.++.++.+. ..+++++++|+++||+++ +|+ ++.|.
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~------~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~ 87 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEE------LPEISEKFEITAVPTFVFFRNGTIVDRVSGA 87 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEcccc------CHHHHHhcCCccccEEEEEECCEEEEEEeCC
Confidence 45667889999999999999999875433 45555555332 358999999999999887 887 46675
Q ss_pred CCHHHHHHHh
Q 023700 260 QDLSDLAKAS 269 (278)
Q Consensus 260 rsle~La~~s 269 (278)
+.++|.+..
T Consensus 88 -~~~~l~~~~ 96 (97)
T cd02984 88 -DPKELAKKV 96 (97)
T ss_pred -CHHHHHHhh
Confidence 567777653
No 37
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.14 E-value=1.6e-10 Score=89.83 Aligned_cols=78 Identities=17% Similarity=0.216 Sum_probs=56.5
Q ss_pred cccceEEEccCCCHHHHHHHHhhh---hH--hhh-cCc--EEEccCCCCCCCcccHHhhhhcCCcccceeEE-C---CE-
Q 023700 188 HAIGAKMYGAFWCSHCLEQKQMFG---SE--AVK-QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-N---GQ- 254 (278)
Q Consensus 188 ~~~gakmYGA~WCpHC~~qK~lFg---ke--A~~-~l~--yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i-n---Gk- 254 (278)
.+..+++|+|+||++|+++++.+- +. .+. ++. .||++.+. ....+++++++|+++||+++ + |+
T Consensus 11 ~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~~~~~i~~~Pti~~~~~~~g~~ 86 (104)
T cd02953 11 GKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKND----PEITALLKRFGVFGPPTYLFYGPGGEPE 86 (104)
T ss_pred CCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCC----HHHHHHHHHcCCCCCCEEEEECCCCCCC
Confidence 345688999999999999997662 21 122 344 45554331 11368999999999999887 3 55
Q ss_pred --EecCCCCHHHHHHHh
Q 023700 255 --VLSGEQDLSDLAKAS 269 (278)
Q Consensus 255 --~y~G~rsle~La~~s 269 (278)
++.|.++.++|.++.
T Consensus 87 ~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 87 PLRLPGFLTADEFLEAL 103 (104)
T ss_pred CcccccccCHHHHHHHh
Confidence 689999999998875
No 38
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.13 E-value=2e-10 Score=86.42 Aligned_cols=73 Identities=16% Similarity=0.236 Sum_probs=57.7
Q ss_pred cceEEEccCCCHHHHHHHHhhhhHh--hh-cC--cEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE---EecCC
Q 023700 190 IGAKMYGAFWCSHCLEQKQMFGSEA--VK-QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE 259 (278)
Q Consensus 190 ~gakmYGA~WCpHC~~qK~lFgkeA--~~-~l--~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk---~y~G~ 259 (278)
.-+++|+++||++|+.+++.|.+-+ +. ++ -.|||+.+ .+++++++|+++||+++ +|+ ++.|.
T Consensus 16 ~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~ 87 (101)
T TIGR01068 16 PVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDEN--------PDIAAKYGIRSIPTLLLFKNGKEVDRSVGA 87 (101)
T ss_pred cEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCC--------HHHHHHcCCCcCCEEEEEeCCcEeeeecCC
Confidence 5577888999999999999987732 22 24 35676543 48899999999999888 776 57899
Q ss_pred CCHHHHHHHhC
Q 023700 260 QDLSDLAKASG 270 (278)
Q Consensus 260 rsle~La~~sG 270 (278)
++.++|.++..
T Consensus 88 ~~~~~l~~~l~ 98 (101)
T TIGR01068 88 LPKAALKQLIN 98 (101)
T ss_pred CCHHHHHHHHH
Confidence 99999988763
No 39
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.13 E-value=2.6e-10 Score=88.18 Aligned_cols=76 Identities=20% Similarity=0.236 Sum_probs=58.4
Q ss_pred cccceEEEccCCCHHHHHHHHhhhhHh--hh-cCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE---EecCC
Q 023700 188 HAIGAKMYGAFWCSHCLEQKQMFGSEA--VK-QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE 259 (278)
Q Consensus 188 ~~~gakmYGA~WCpHC~~qK~lFgkeA--~~-~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk---~y~G~ 259 (278)
.+..+++|+|+||++|+.+++.+.+-+ .. ++.+++.+.+. ..++.++++|+++||+.+ ||+ ++.|.
T Consensus 13 ~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~------~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~ 86 (97)
T cd02949 13 DRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDE------DQEIAEAAGIMGTPTVQFFKDKELVKEISGV 86 (97)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCC------CHHHHHHCCCeeccEEEEEECCeEEEEEeCC
Confidence 345578999999999999999987622 22 34444444332 358899999999999887 887 68999
Q ss_pred CCHHHHHHHh
Q 023700 260 QDLSDLAKAS 269 (278)
Q Consensus 260 rsle~La~~s 269 (278)
++.++|.++.
T Consensus 87 ~~~~~~~~~l 96 (97)
T cd02949 87 KMKSEYREFI 96 (97)
T ss_pred ccHHHHHHhh
Confidence 9999998875
No 40
>PTZ00051 thioredoxin; Provisional
Probab=99.13 E-value=2.6e-10 Score=87.09 Aligned_cols=73 Identities=19% Similarity=0.413 Sum_probs=53.4
Q ss_pred cccceEEEccCCCHHHHHHHHhhhhHh--hhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE---EecCCC
Q 023700 188 HAIGAKMYGAFWCSHCLEQKQMFGSEA--VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQ 260 (278)
Q Consensus 188 ~~~gakmYGA~WCpHC~~qK~lFgkeA--~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk---~y~G~r 260 (278)
++..+++|+|+||++|+++++.|.+.+ +..+.++..+.+. ..+++++++|+++||+++ ||+ ++.|.
T Consensus 18 ~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~------~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~- 90 (98)
T PTZ00051 18 NELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDE------LSEVAEKENITSMPTFKVFKNGSVVDTLLGA- 90 (98)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcc------hHHHHHHCCCceeeEEEEEeCCeEEEEEeCC-
Confidence 345677899999999999999998743 2234444433221 358999999999999887 887 57886
Q ss_pred CHHHHHH
Q 023700 261 DLSDLAK 267 (278)
Q Consensus 261 sle~La~ 267 (278)
..++|.+
T Consensus 91 ~~~~~~~ 97 (98)
T PTZ00051 91 NDEALKQ 97 (98)
T ss_pred CHHHhhc
Confidence 5577754
No 41
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.13 E-value=2.6e-10 Score=86.34 Aligned_cols=74 Identities=23% Similarity=0.381 Sum_probs=57.7
Q ss_pred cccceEEEccCCCHHHHHHHHhhhhHh--hh---cC--cEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE---E
Q 023700 188 HAIGAKMYGAFWCSHCLEQKQMFGSEA--VK---QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---V 255 (278)
Q Consensus 188 ~~~gakmYGA~WCpHC~~qK~lFgkeA--~~---~l--~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk---~ 255 (278)
...-+++|+|+||++|+++++.|.+.+ ++ .+ ..+||+. ..++|++++|+++||+.+ +|+ +
T Consensus 13 ~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--------~~~~~~~~~i~~~P~~~~~~~~~~~~~ 84 (102)
T TIGR01126 13 NKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA--------EKDLASRFGVSGFPTIKFFPKGKKPVD 84 (102)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc--------hHHHHHhCCCCcCCEEEEecCCCccee
Confidence 334578999999999999999887632 22 23 3567754 359999999999999876 554 6
Q ss_pred ecCCCCHHHHHHHh
Q 023700 256 LSGEQDLSDLAKAS 269 (278)
Q Consensus 256 y~G~rsle~La~~s 269 (278)
|.|.++.++|.++.
T Consensus 85 ~~g~~~~~~l~~~i 98 (102)
T TIGR01126 85 YEGGRDLEAIVEFV 98 (102)
T ss_pred ecCCCCHHHHHHHH
Confidence 99999999998875
No 42
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.12 E-value=2.9e-10 Score=84.35 Aligned_cols=72 Identities=25% Similarity=0.474 Sum_probs=57.0
Q ss_pred cceEEEccCCCHHHHHHHHhhhhHh--h---hcCc--EEEccCCCCCCCcccHHhhhhcCCcccceeEE--CC-E---Ee
Q 023700 190 IGAKMYGAFWCSHCLEQKQMFGSEA--V---KQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG-Q---VL 256 (278)
Q Consensus 190 ~gakmYGA~WCpHC~~qK~lFgkeA--~---~~l~--yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nG-k---~y 256 (278)
..+++|+++||++|+++++.|.+-+ . ..+. .|+|+. ..++|++++|+++||+++ ++ + +|
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~ 88 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA--------NNDLCSEYGVRGYPTIKLFPNGSKEPVKY 88 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc--------hHHHHHhCCCCCCCEEEEEcCCCcccccC
Confidence 4688999999999999999997732 3 2233 566664 259999999999999887 44 3 69
Q ss_pred cCCCCHHHHHHHh
Q 023700 257 SGEQDLSDLAKAS 269 (278)
Q Consensus 257 ~G~rsle~La~~s 269 (278)
.|.++.++|.+|.
T Consensus 89 ~g~~~~~~i~~~~ 101 (101)
T cd02961 89 EGPRTLESLVEFI 101 (101)
T ss_pred CCCcCHHHHHhhC
Confidence 9999999998873
No 43
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.12 E-value=2.8e-10 Score=94.30 Aligned_cols=84 Identities=11% Similarity=0.053 Sum_probs=60.9
Q ss_pred CHHHHHHHhhhcccceEEEccCCCH--HHH--HHHHhhhhHhhh-----cC--cEEEccCCCCCCCcccHHhhhhcCCcc
Q 023700 177 SPFALSLAKHLHAIGAKMYGAFWCS--HCL--EQKQMFGSEAVK-----QL--NYVECFPDGYRKGTKIAKACSDAKIEG 245 (278)
Q Consensus 177 ~~~~~aLAkhL~~~gakmYGA~WCp--HC~--~qK~lFgkeA~~-----~l--~yVEC~~dg~n~~~k~~~lC~~~~V~G 245 (278)
..++..+.++ ...-+++|+|+||+ ||+ .+.|.+.+.|.+ ++ ..|||+. ..++|++++|+|
T Consensus 17 ~nF~~~v~~~-~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~--------~~~La~~~~I~~ 87 (120)
T cd03065 17 KNYKQVLKKY-DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK--------DAKVAKKLGLDE 87 (120)
T ss_pred hhHHHHHHhC-CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC--------CHHHHHHcCCcc
Confidence 3344333333 44567899999994 799 667767664432 23 4667664 359999999999
Q ss_pred cceeEE--CCE--EecCCCCHHHHHHHh
Q 023700 246 FPTWVI--NGQ--VLSGEQDLSDLAKAS 269 (278)
Q Consensus 246 yPTw~i--nGk--~y~G~rsle~La~~s 269 (278)
|||+++ ||+ .|.|.++.++|.++.
T Consensus 88 iPTl~lfk~G~~v~~~G~~~~~~l~~~l 115 (120)
T cd03065 88 EDSIYVFKDDEVIEYDGEFAADTLVEFL 115 (120)
T ss_pred ccEEEEEECCEEEEeeCCCCHHHHHHHH
Confidence 999887 997 699999999999875
No 44
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.09 E-value=2.7e-10 Score=107.65 Aligned_cols=75 Identities=24% Similarity=0.402 Sum_probs=59.5
Q ss_pred ccceEEEccCCCHHHHHHHHhhhhHhh--h------cCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE----
Q 023700 189 AIGAKMYGAFWCSHCLEQKQMFGSEAV--K------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---- 254 (278)
Q Consensus 189 ~~gakmYGA~WCpHC~~qK~lFgkeA~--~------~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk---- 254 (278)
+.-+++|+|+||+||+++++.|.+.|. + .+..|||+.+ .++|++++|++|||+.+ +|+
T Consensus 19 ~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~--------~~l~~~~~i~~~Pt~~~~~~g~~~~~ 90 (462)
T TIGR01130 19 EFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE--------KDLAQKYGVSGYPTLKIFRNGEDSVS 90 (462)
T ss_pred CCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc--------HHHHHhCCCccccEEEEEeCCcccee
Confidence 345788899999999999999877431 1 2346888753 48999999999999887 565
Q ss_pred EecCCCCHHHHHHHhCC
Q 023700 255 VLSGEQDLSDLAKASGF 271 (278)
Q Consensus 255 ~y~G~rsle~La~~sG~ 271 (278)
+|.|.++.++|.+|.-.
T Consensus 91 ~~~g~~~~~~l~~~i~~ 107 (462)
T TIGR01130 91 DYNGPRDADGIVKYMKK 107 (462)
T ss_pred EecCCCCHHHHHHHHHH
Confidence 59999999999888743
No 45
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.09 E-value=3.5e-10 Score=91.19 Aligned_cols=81 Identities=16% Similarity=0.113 Sum_probs=58.6
Q ss_pred HHhhhcccc--eEEEccCCCHHHHHHHHhhhhHhh--hcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE--
Q 023700 183 LAKHLHAIG--AKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ-- 254 (278)
Q Consensus 183 LAkhL~~~g--akmYGA~WCpHC~~qK~lFgkeA~--~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk-- 254 (278)
++++|+... +++|+|+|||+|+.+++++.+-+. .++.++..+.|. .+++.++++|++.||+++ ||+
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~------~~~l~~~~~v~~vPt~~i~~~g~~~ 88 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDE------DKEKAEKYGVERVPTTIFLQDGGKD 88 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCc------CHHHHHHcCCCcCCEEEEEeCCeec
Confidence 555555532 456789999999999999987542 234444444332 368999999999999998 332
Q ss_pred ---EecCCCCHHHHHHHh
Q 023700 255 ---VLSGEQDLSDLAKAS 269 (278)
Q Consensus 255 ---~y~G~rsle~La~~s 269 (278)
++.|..+-++|.++.
T Consensus 89 ~~~~~~G~~~~~el~~~i 106 (113)
T cd02975 89 GGIRYYGLPAGYEFASLI 106 (113)
T ss_pred ceEEEEecCchHHHHHHH
Confidence 688988888888764
No 46
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.09 E-value=6.3e-10 Score=89.41 Aligned_cols=91 Identities=14% Similarity=0.089 Sum_probs=61.7
Q ss_pred HHHHHHhhhc-ccceEEEccCCCHHHHHHHHhhhh---H--hh-hcCcEEEccCCCCCC-------CcccHHhhhhcCCc
Q 023700 179 FALSLAKHLH-AIGAKMYGAFWCSHCLEQKQMFGS---E--AV-KQLNYVECFPDGYRK-------GTKIAKACSDAKIE 244 (278)
Q Consensus 179 ~~~aLAkhL~-~~gakmYGA~WCpHC~~qK~lFgk---e--A~-~~l~yVEC~~dg~n~-------~~k~~~lC~~~~V~ 244 (278)
.+++-|+.=. +..+++|+|+||+||+++++.+.+ . .+ ..+.++.++.+.... .....+++.+++|+
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~ 83 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVR 83 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCc
Confidence 3455566556 667889999999999999986632 1 11 234444444332100 01136899999999
Q ss_pred ccceeEE---C-CE---EecCCCCHHHHHHHh
Q 023700 245 GFPTWVI---N-GQ---VLSGEQDLSDLAKAS 269 (278)
Q Consensus 245 GyPTw~i---n-Gk---~y~G~rsle~La~~s 269 (278)
++||.++ + |+ ++.|..+.+++.++.
T Consensus 84 ~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l 115 (125)
T cd02951 84 FTPTVIFLDPEGGKEIARLPGYLPPDEFLAYL 115 (125)
T ss_pred cccEEEEEcCCCCceeEEecCCCCHHHHHHHH
Confidence 9999877 4 56 689999988888765
No 47
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.09 E-value=1.9e-10 Score=83.00 Aligned_cols=62 Identities=16% Similarity=0.219 Sum_probs=46.9
Q ss_pred ceEEEccCCCHHHHHHHHhhhhHh--hhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEECCE-EecC
Q 023700 191 GAKMYGAFWCSHCLEQKQMFGSEA--VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ-VLSG 258 (278)
Q Consensus 191 gakmYGA~WCpHC~~qK~lFgkeA--~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inGk-~y~G 258 (278)
.+++|+++|||+|+++++++.+.+ ..++.+.+.+.+. ..++.++++|+++||+.+||+ ++.|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~------~~~l~~~~~i~~vPti~i~~~~~~~g 66 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAE------FPDLADEYGVMSVPAIVINGKVEFVG 66 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEccc------CHhHHHHcCCcccCEEEECCEEEEec
Confidence 468999999999999999998742 2245555554332 247899999999999999987 4544
No 48
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.08 E-value=6e-11 Score=113.20 Aligned_cols=71 Identities=15% Similarity=0.382 Sum_probs=58.2
Q ss_pred eEEEccCCCHHHHHHHHhhhhH--hhhc------CcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE--EecCC
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSE--AVKQ------LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--VLSGE 259 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgke--A~~~------l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk--~y~G~ 259 (278)
.+-||||||.|||++.|.|.+- ..+. +...||++ .+.++.+++|+||||.++ ||. .|.|.
T Consensus 47 ~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~--------f~aiAnefgiqGYPTIk~~kgd~a~dYRG~ 118 (468)
T KOG4277|consen 47 FVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATR--------FPAIANEFGIQGYPTIKFFKGDHAIDYRGG 118 (468)
T ss_pred EEEeechhhhhcccccchhHHhCcchhhcCCceeeccccccc--------chhhHhhhccCCCceEEEecCCeeeecCCC
Confidence 6778899999999999999873 1232 45778875 579999999999999887 544 79999
Q ss_pred CCHHHHHHHhC
Q 023700 260 QDLSDLAKASG 270 (278)
Q Consensus 260 rsle~La~~sG 270 (278)
|+.|+|.++.-
T Consensus 119 R~Kd~iieFAh 129 (468)
T KOG4277|consen 119 REKDAIIEFAH 129 (468)
T ss_pred ccHHHHHHHHH
Confidence 99999998864
No 49
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.08 E-value=3.3e-10 Score=112.52 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=58.6
Q ss_pred cccceEEEccCCCHHHHHHHHhhhhHhhh------cCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE----E
Q 023700 188 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ----V 255 (278)
Q Consensus 188 ~~~gakmYGA~WCpHC~~qK~lFgkeA~~------~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk----~ 255 (278)
.+..+++|+|+||+||+.++|.|.+.|.+ .+..|+|+.+. ....+++++|++|||+++ ||+ .
T Consensus 371 ~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~------~~~~~~~~~I~~~PTii~Fk~g~~~~~~ 444 (463)
T TIGR00424 371 KEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQ------KEFAKQELQLGSFPTILFFPKHSSRPIK 444 (463)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCc------cHHHHHHcCCCccceEEEEECCCCCcee
Confidence 44568889999999999999999885422 24568887542 123457899999999887 653 6
Q ss_pred ec-CCCCHHHHHHHhC
Q 023700 256 LS-GEQDLSDLAKASG 270 (278)
Q Consensus 256 y~-G~rsle~La~~sG 270 (278)
|. |.|+++.|..|..
T Consensus 445 Y~~g~R~~e~L~~Fv~ 460 (463)
T TIGR00424 445 YPSEKRDVDSLMSFVN 460 (463)
T ss_pred CCCCCCCHHHHHHHHH
Confidence 97 5899999998863
No 50
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.06 E-value=4.1e-10 Score=92.96 Aligned_cols=61 Identities=11% Similarity=0.141 Sum_probs=46.9
Q ss_pred cccceEEEccCCCHHHHHHHHhhhhHhh--hc-CcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE
Q 023700 188 HAIGAKMYGAFWCSHCLEQKQMFGSEAV--KQ-LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ 254 (278)
Q Consensus 188 ~~~gakmYGA~WCpHC~~qK~lFgkeA~--~~-l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk 254 (278)
....++.|+|+|||+|+.++|.|.+.|. .. +.++.++.|. .+++.++++|++.||+.+ ||+
T Consensus 14 ~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~------~~~la~~~~V~~iPTf~~fk~G~ 79 (114)
T cd02954 14 EKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDE------VPDFNKMYELYDPPTVMFFFRNK 79 (114)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCC------CHHHHHHcCCCCCCEEEEEECCE
Confidence 3456788999999999999999988542 22 3445554442 369999999999999887 887
No 51
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.01 E-value=1.2e-09 Score=96.58 Aligned_cols=82 Identities=11% Similarity=0.032 Sum_probs=61.1
Q ss_pred HHHhhhcccceEEEccCCCHHHHHHHHhhhhHhhh--cCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCEEec
Q 023700 182 SLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQVLS 257 (278)
Q Consensus 182 aLAkhL~~~gakmYGA~WCpHC~~qK~lFgkeA~~--~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk~y~ 257 (278)
.|.+.-+.+.+++|+|+|||||+.+++++.+-+.. ++.++..+.+. ..+++++++|+++||+++ +|+++.
T Consensus 127 ~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~------~~~~~~~~~V~~vPtl~i~~~~~~~~ 200 (215)
T TIGR02187 127 LLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANE------NPDLAEKYGVMSVPKIVINKGVEEFV 200 (215)
T ss_pred HHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCC------CHHHHHHhCCccCCEEEEecCCEEEE
Confidence 33333334457779999999999999988874432 35544454432 358999999999999999 466699
Q ss_pred CCCCHHHHHHHh
Q 023700 258 GEQDLSDLAKAS 269 (278)
Q Consensus 258 G~rsle~La~~s 269 (278)
|..+.++|.++.
T Consensus 201 G~~~~~~l~~~l 212 (215)
T TIGR02187 201 GAYPEEQFLEYI 212 (215)
T ss_pred CCCCHHHHHHHH
Confidence 999999998875
No 52
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.00 E-value=1.4e-09 Score=87.83 Aligned_cols=60 Identities=12% Similarity=0.084 Sum_probs=46.7
Q ss_pred ccceEEEccCCCHHHHHHHHhhhhHh--hhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE
Q 023700 189 AIGAKMYGAFWCSHCLEQKQMFGSEA--VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ 254 (278)
Q Consensus 189 ~~gakmYGA~WCpHC~~qK~lFgkeA--~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk 254 (278)
...+++|+|+||++|+.+++.+.+.+ +.++.++..+.+. ..++.++++|++.||+++ ||+
T Consensus 23 ~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~------~~~l~~~~~v~~vPt~l~fk~G~ 86 (113)
T cd02989 23 ERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEK------APFLVEKLNIKVLPTVILFKNGK 86 (113)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEccc------CHHHHHHCCCccCCEEEEEECCE
Confidence 45577888999999999999998843 3345555555442 358999999999999887 887
No 53
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=5.4e-10 Score=111.66 Aligned_cols=83 Identities=20% Similarity=0.383 Sum_probs=60.8
Q ss_pred HHHhhhcccceEEEccCCCHHHHHHHHhhhhHh--hhc-----CcEEEccCCCCCCCcccHHhhhhcCCcccceeEE---
Q 023700 182 SLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--VKQ-----LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--- 251 (278)
Q Consensus 182 aLAkhL~~~gakmYGA~WCpHC~~qK~lFgkeA--~~~-----l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--- 251 (278)
.++..-++-..+.||||||+||++++|.+.+.| +++ |.++|-+.+. -....|+||||+..
T Consensus 378 ~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd----------~~~~~~~~fPTI~~~pa 447 (493)
T KOG0190|consen 378 DIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND----------VPSLKVDGFPTILFFPA 447 (493)
T ss_pred HHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc----------CccccccccceEEEecC
Confidence 333344445577888999999999999999854 333 3466666542 12358899999887
Q ss_pred CCE----EecCCCCHHHHHHHhCCCCC
Q 023700 252 NGQ----VLSGEQDLSDLAKASGFPEM 274 (278)
Q Consensus 252 nGk----~y~G~rsle~La~~sG~~g~ 274 (278)
+++ .|.|.|++++|..+.--.|.
T Consensus 448 g~k~~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 448 GHKSNPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred CCCCCCcccCCCcchHHHHhhhccCCC
Confidence 332 69999999999999877765
No 54
>PLN02309 5'-adenylylsulfate reductase
Probab=99.00 E-value=1.1e-09 Score=108.61 Aligned_cols=76 Identities=16% Similarity=0.257 Sum_probs=58.2
Q ss_pred hcccceEEEccCCCHHHHHHHHhhhhHhhh------cCcEEEccCCCCCCCcccHHhhh-hcCCcccceeEE--CCE---
Q 023700 187 LHAIGAKMYGAFWCSHCLEQKQMFGSEAVK------QLNYVECFPDGYRKGTKIAKACS-DAKIEGFPTWVI--NGQ--- 254 (278)
Q Consensus 187 L~~~gakmYGA~WCpHC~~qK~lFgkeA~~------~l~yVEC~~dg~n~~~k~~~lC~-~~~V~GyPTw~i--nGk--- 254 (278)
-.+..+++|+|+||+||+.+++.|.+.|.+ .+..|||+.+ +.++|+ +++|++|||+++ +|.
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~-------~~~la~~~~~I~~~PTil~f~~g~~~~ 436 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGD-------QKEFAKQELQLGSFPTILLFPKNSSRP 436 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCc-------chHHHHhhCCCceeeEEEEEeCCCCCe
Confidence 345568899999999999999999885421 1346777632 247886 599999999887 553
Q ss_pred -EecC-CCCHHHHHHHh
Q 023700 255 -VLSG-EQDLSDLAKAS 269 (278)
Q Consensus 255 -~y~G-~rsle~La~~s 269 (278)
+|.| .|+.+.|..|.
T Consensus 437 v~Y~~~~R~~~~L~~fv 453 (457)
T PLN02309 437 IKYPSEKRDVDSLLSFV 453 (457)
T ss_pred eecCCCCcCHHHHHHHH
Confidence 7875 69999999885
No 55
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.00 E-value=6.7e-10 Score=88.65 Aligned_cols=65 Identities=14% Similarity=0.127 Sum_probs=48.9
Q ss_pred ccceEEEccCCCHHHHHHHHhhhhHh--hhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE---EecCCC
Q 023700 189 AIGAKMYGAFWCSHCLEQKQMFGSEA--VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQ 260 (278)
Q Consensus 189 ~~gakmYGA~WCpHC~~qK~lFgkeA--~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk---~y~G~r 260 (278)
...++.|+|+||++|+.+++.|.+.| +..+.++.++.+. . +++++++|+++||+++ ||+ ++.|.+
T Consensus 25 ~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~------~-~l~~~~~i~~~Pt~~~f~~G~~v~~~~G~~ 96 (113)
T cd02957 25 TRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEK------A-FLVNYLDIKVLPTLLVYKNGELIDNIVGFE 96 (113)
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchh------h-HHHHhcCCCcCCEEEEEECCEEEEEEecHH
Confidence 45577899999999999999998744 3345555554331 3 8899999999999887 898 455544
No 56
>PTZ00102 disulphide isomerase; Provisional
Probab=98.99 E-value=9.5e-10 Score=105.60 Aligned_cols=78 Identities=15% Similarity=0.273 Sum_probs=60.5
Q ss_pred cccceEEEccCCCHHHHHHHHhhhhHh--hhc-----CcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CC-E---
Q 023700 188 HAIGAKMYGAFWCSHCLEQKQMFGSEA--VKQ-----LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG-Q--- 254 (278)
Q Consensus 188 ~~~gakmYGA~WCpHC~~qK~lFgkeA--~~~-----l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nG-k--- 254 (278)
.+..+++|+|+||+||++++|.|.+.| +++ +..|||+.+ ...|++++|++|||+.+ +| +
T Consensus 375 ~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~--------~~~~~~~~v~~~Pt~~~~~~~~~~~~ 446 (477)
T PTZ00102 375 DKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTAN--------ETPLEEFSWSAFPTILFVKAGERTPI 446 (477)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCC--------ccchhcCCCcccCeEEEEECCCccee
Confidence 445688999999999999999998743 221 456888754 25699999999999887 44 3
Q ss_pred EecCCCCHHHHHHHhCCCC
Q 023700 255 VLSGEQDLSDLAKASGFPE 273 (278)
Q Consensus 255 ~y~G~rsle~La~~sG~~g 273 (278)
+|.|.++.++|.++..-..
T Consensus 447 ~~~G~~~~~~l~~~i~~~~ 465 (477)
T PTZ00102 447 PYEGERTVEGFKEFVNKHA 465 (477)
T ss_pred EecCcCCHHHHHHHHHHcC
Confidence 6899999999998875543
No 57
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.99 E-value=1.8e-09 Score=81.60 Aligned_cols=68 Identities=12% Similarity=0.246 Sum_probs=50.7
Q ss_pred EEccCCCHHHHHHHHhhhhHhhh---cCcEEEccCCCCCCCcccHHhhhhcCCcccceeEECCE-EecCC-CCHHHHHHH
Q 023700 194 MYGAFWCSHCLEQKQMFGSEAVK---QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ-VLSGE-QDLSDLAKA 268 (278)
Q Consensus 194 mYGA~WCpHC~~qK~lFgkeA~~---~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inGk-~y~G~-rsle~La~~ 268 (278)
.|+|+|||+|+.+++.|.+.+.+ ++.+++.+ + .+...+++|.+.||+.+||+ .++|. .+.++|.++
T Consensus 4 ~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~-~--------~~~a~~~~v~~vPti~i~G~~~~~G~~~~~~~l~~~ 74 (76)
T TIGR00412 4 QIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT-D--------MNEILEAGVTATPGVAVDGELVIMGKIPSKEEIKEI 74 (76)
T ss_pred EEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC-C--------HHHHHHcCCCcCCEEEECCEEEEEeccCCHHHHHHH
Confidence 34479999999999999884322 24455554 1 24578899999999999997 56785 566899887
Q ss_pred hC
Q 023700 269 SG 270 (278)
Q Consensus 269 sG 270 (278)
.+
T Consensus 75 l~ 76 (76)
T TIGR00412 75 LK 76 (76)
T ss_pred hC
Confidence 64
No 58
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.98 E-value=4.8e-09 Score=90.06 Aligned_cols=72 Identities=10% Similarity=0.210 Sum_probs=53.7
Q ss_pred cceEEEccCCCHHHHHHHHhhhhHh--hh--cC--cEEEccCCCCCCCcccHHhhhhcCCcc------cceeEE--CCE-
Q 023700 190 IGAKMYGAFWCSHCLEQKQMFGSEA--VK--QL--NYVECFPDGYRKGTKIAKACSDAKIEG------FPTWVI--NGQ- 254 (278)
Q Consensus 190 ~gakmYGA~WCpHC~~qK~lFgkeA--~~--~l--~yVEC~~dg~n~~~k~~~lC~~~~V~G------yPTw~i--nGk- 254 (278)
.-+++|+|+|||||++++|.|.+-+ ++ ++ ..|||+. ..++|++++|++ +||+++ ||+
T Consensus 49 ~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~--------~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~ 120 (152)
T cd02962 49 TWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR--------FPNVAEKFRVSTSPLSKQLPTIILFQGGKE 120 (152)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC--------CHHHHHHcCceecCCcCCCCEEEEEECCEE
Confidence 4588999999999999999998743 22 24 4566654 358999999988 999887 887
Q ss_pred --EecC-----------CCCHHHHHHHh
Q 023700 255 --VLSG-----------EQDLSDLAKAS 269 (278)
Q Consensus 255 --~y~G-----------~rsle~La~~s 269 (278)
++.| .-++|++.+..
T Consensus 121 v~r~~G~~~~~~~~~~~~~~~~~~~~~~ 148 (152)
T cd02962 121 VARRPYYNDSKGRAVPFTFSKENVIRHF 148 (152)
T ss_pred EEEEeccccCccccccccccHHHHHHhc
Confidence 4554 45666666554
No 59
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.97 E-value=1.5e-09 Score=89.43 Aligned_cols=70 Identities=11% Similarity=0.064 Sum_probs=56.3
Q ss_pred cceEEEccCC--CHHHHHHHHhhhhHhhh--c-Cc--EEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE---Eec
Q 023700 190 IGAKMYGAFW--CSHCLEQKQMFGSEAVK--Q-LN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLS 257 (278)
Q Consensus 190 ~gakmYGA~W--CpHC~~qK~lFgkeA~~--~-l~--yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk---~y~ 257 (278)
.-+++|+|.| ||+|++++|.|.+.|.+ . +. .||++. .++++.+++|+++||+++ ||+ ++.
T Consensus 29 ~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~--------~~~la~~f~V~sIPTli~fkdGk~v~~~~ 100 (111)
T cd02965 29 DLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRAD--------EQALAARFGVLRTPALLFFRDGRYVGVLA 100 (111)
T ss_pred CEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCC--------CHHHHHHcCCCcCCEEEEEECCEEEEEEe
Confidence 3478999997 99999999999885422 2 33 566653 359999999999999988 998 579
Q ss_pred CCCCHHHHHH
Q 023700 258 GEQDLSDLAK 267 (278)
Q Consensus 258 G~rsle~La~ 267 (278)
|.++.+||.+
T Consensus 101 G~~~~~e~~~ 110 (111)
T cd02965 101 GIRDWDEYVA 110 (111)
T ss_pred CccCHHHHhh
Confidence 9999999874
No 60
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.97 E-value=1.9e-09 Score=84.38 Aligned_cols=80 Identities=15% Similarity=0.202 Sum_probs=61.3
Q ss_pred HHHhhhccc-ceEEEccCCCHHHHHHHHhhhhHh--hhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEECCE-Eec
Q 023700 182 SLAKHLHAI-GAKMYGAFWCSHCLEQKQMFGSEA--VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ-VLS 257 (278)
Q Consensus 182 aLAkhL~~~-gakmYGA~WCpHC~~qK~lFgkeA--~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inGk-~y~ 257 (278)
+.++.|+.. .+.+|.++||++|...++++.+.+ +.++.+...+.+. ..++.++++|.+.||+++||+ .+.
T Consensus 5 ~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~------~~e~a~~~~V~~vPt~vidG~~~~~ 78 (89)
T cd03026 5 EQIRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGAL------FQDEVEERGIMSVPAIFLNGELFGF 78 (89)
T ss_pred HHHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHh------CHHHHHHcCCccCCEEEECCEEEEe
Confidence 444567764 688999999999999999998843 2245555444432 458999999999999999998 578
Q ss_pred CCCCHHHHHH
Q 023700 258 GEQDLSDLAK 267 (278)
Q Consensus 258 G~rsle~La~ 267 (278)
|..+.+++..
T Consensus 79 G~~~~~e~~~ 88 (89)
T cd03026 79 GRMTLEEILA 88 (89)
T ss_pred CCCCHHHHhh
Confidence 8888888753
No 61
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.96 E-value=2.4e-09 Score=88.09 Aligned_cols=81 Identities=17% Similarity=0.281 Sum_probs=56.5
Q ss_pred ccceEEEccCCCHHHHHHHHhhhhHhh---hcCcEEEccCCCCCCC---cccHHhhhhc----CCcccceeEE--CCE--
Q 023700 189 AIGAKMYGAFWCSHCLEQKQMFGSEAV---KQLNYVECFPDGYRKG---TKIAKACSDA----KIEGFPTWVI--NGQ-- 254 (278)
Q Consensus 189 ~~gakmYGA~WCpHC~~qK~lFgkeA~---~~l~yVEC~~dg~n~~---~k~~~lC~~~----~V~GyPTw~i--nGk-- 254 (278)
...+++|||+|||+|+.++|.|.+.+. ..+-||+.+.+....- ....++.+++ +|.+.||+++ ||+
T Consensus 24 ~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~v 103 (122)
T TIGR01295 24 ETATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQV 103 (122)
T ss_pred CcEEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeEE
Confidence 356899999999999999999988432 2255888875431110 0123555554 5667999887 897
Q ss_pred -EecC-CCCHHHHHHHh
Q 023700 255 -VLSG-EQDLSDLAKAS 269 (278)
Q Consensus 255 -~y~G-~rsle~La~~s 269 (278)
+..| ..+.++|.++.
T Consensus 104 ~~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 104 SVRCGSSTTAQELQDIA 120 (122)
T ss_pred EEEeCCCCCHHHHHHHh
Confidence 5778 45699999875
No 62
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.96 E-value=2e-09 Score=95.22 Aligned_cols=74 Identities=16% Similarity=0.231 Sum_probs=57.0
Q ss_pred ccceEEEcc---CCCHHHHHHHHhhhhHh--hhcC--cEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE----E
Q 023700 189 AIGAKMYGA---FWCSHCLEQKQMFGSEA--VKQL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ----V 255 (278)
Q Consensus 189 ~~gakmYGA---~WCpHC~~qK~lFgkeA--~~~l--~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk----~ 255 (278)
...+++|.+ +|||||+.++|++.+.+ +.++ .+|+++.+. ..+++++++|+++||+++ ||+ +
T Consensus 20 ~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~------~~~l~~~~~V~~~Pt~~~f~~g~~~~~~ 93 (215)
T TIGR02187 20 PVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPE------DKEEAEKYGVERVPTTIILEEGKDGGIR 93 (215)
T ss_pred CeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcc------cHHHHHHcCCCccCEEEEEeCCeeeEEE
Confidence 455778888 99999999999998853 3233 467776542 469999999999999988 653 6
Q ss_pred ecCCCCHHHHHHH
Q 023700 256 LSGEQDLSDLAKA 268 (278)
Q Consensus 256 y~G~rsle~La~~ 268 (278)
+.|..+.++|.++
T Consensus 94 ~~G~~~~~~l~~~ 106 (215)
T TIGR02187 94 YTGIPAGYEFAAL 106 (215)
T ss_pred EeecCCHHHHHHH
Confidence 8899988887544
No 63
>COG4243 Predicted membrane protein [Function unknown]
Probab=98.96 E-value=3e-09 Score=92.40 Aligned_cols=57 Identities=30% Similarity=0.490 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCcc--CCCC-CCCccccccchhhhhcCcchhHHHHHHHh
Q 023700 68 GIGGVGFLETTYLSYLKLTNSDAF--CPIG-GASCGDVLNSDYAVVFGVPLPFIGMFAYG 124 (278)
Q Consensus 68 ~la~iGll~t~yLt~~kl~~~~~~--C~i~-~~gC~~Vl~S~ya~vfGiPlsl~Gl~aY~ 124 (278)
++++++.+.+.|+.+.+++++.-. |+.| ..+|++|++||||++||+||+++|+++|.
T Consensus 20 ~i~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~C~sVl~Sp~A~~lGIPl~llG~a~Ft 79 (156)
T COG4243 20 VIGGLLSLSLMAEKLRSLLGGGYACSCDANGIVSCSSVLSSPYATILGIPLSLLGIAYFT 79 (156)
T ss_pred HHHHHHHHHHHHHHHHHhCCCceeccccccccccHHHHHcCcchhccCCchHHHHHHHHH
Confidence 444555555566666666776544 4545 46999999999999999999999999999
No 64
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.93 E-value=1.6e-09 Score=80.32 Aligned_cols=75 Identities=21% Similarity=0.267 Sum_probs=54.0
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhh-cCcEEEccCCCCCCCcccHHhhhhcCCcccceeEECCEEecCCCCHHHHHH
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVK-QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAK 267 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~-~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inGk~y~G~rsle~La~ 267 (278)
+++|+++|||+|++.++++.+.... .+.+++.+.+. +...-...+-+..++..+|+.++||+...|..++.++.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~-~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~ 76 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLS-NGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYK 76 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCC-ChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHH
Confidence 4789999999999999999985421 16688887653 111111235566799999999999998888766665543
No 65
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.93 E-value=9.1e-10 Score=111.25 Aligned_cols=71 Identities=25% Similarity=0.474 Sum_probs=54.6
Q ss_pred cceEEEccCCCHHHHHHHHhhhhHhhh--------cCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE------C---
Q 023700 190 IGAKMYGAFWCSHCLEQKQMFGSEAVK--------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI------N--- 252 (278)
Q Consensus 190 ~gakmYGA~WCpHC~~qK~lFgkeA~~--------~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i------n--- 252 (278)
..++.|+|.|||||++.+|.|.+-|.. .+.-|||+.+ .| ..+|++++|++|||+.+ |
T Consensus 59 ~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~-~N-----~~lCRef~V~~~Ptlryf~~~~~~~~~ 132 (606)
T KOG1731|consen 59 AKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADE-EN-----VKLCREFSVSGYPTLRYFPPDSQNKTD 132 (606)
T ss_pred hHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccch-hh-----hhhHhhcCCCCCceeeecCCccccCcC
Confidence 346778899999999999999985421 2578999965 34 49999999999999987 3
Q ss_pred CEEecCCCCHHHHH
Q 023700 253 GQVLSGEQDLSDLA 266 (278)
Q Consensus 253 Gk~y~G~rsle~La 266 (278)
|+.++|....+|+.
T Consensus 133 G~~~~~~~~~~ei~ 146 (606)
T KOG1731|consen 133 GSDVSGPVIPSEIR 146 (606)
T ss_pred CCcccCCcchhhHH
Confidence 77888855444443
No 66
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.5e-09 Score=103.71 Aligned_cols=81 Identities=25% Similarity=0.397 Sum_probs=63.7
Q ss_pred HHHhhhcccceEEEccCCCHHHHHHHHhhhhHh--hhc---CcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CC-
Q 023700 182 SLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--VKQ---LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG- 253 (278)
Q Consensus 182 aLAkhL~~~gakmYGA~WCpHC~~qK~lFgkeA--~~~---l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nG- 253 (278)
.+...-.+..+++|+||||+||+++.+.|.+.+ ... +.-|||+.+ .++|++++|+||||+.+ +|
T Consensus 41 ~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~--------~~~~~~y~i~gfPtl~~f~~~~ 112 (383)
T KOG0191|consen 41 DFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEH--------KDLCEKYGIQGFPTLKVFRPGK 112 (383)
T ss_pred HHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhh--------HHHHHhcCCccCcEEEEEcCCC
Confidence 334455677889999999999999999999743 222 456777753 59999999999999988 55
Q ss_pred --EEecCCCCHHHHHHHhC
Q 023700 254 --QVLSGEQDLSDLAKASG 270 (278)
Q Consensus 254 --k~y~G~rsle~La~~sG 270 (278)
..|.|.++.++++++.-
T Consensus 113 ~~~~~~~~~~~~~~~~~~~ 131 (383)
T KOG0191|consen 113 KPIDYSGPRNAESLAEFLI 131 (383)
T ss_pred ceeeccCcccHHHHHHHHH
Confidence 26999999999988753
No 67
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.90 E-value=1.8e-09 Score=84.32 Aligned_cols=83 Identities=17% Similarity=0.238 Sum_probs=50.5
Q ss_pred hcccceEEEccCCCHHHHHHHHhhhh-Hhh----h-cCc--EEEccCCCC------------CCCcccHHhhhhcCCccc
Q 023700 187 LHAIGAKMYGAFWCSHCLEQKQMFGS-EAV----K-QLN--YVECFPDGY------------RKGTKIAKACSDAKIEGF 246 (278)
Q Consensus 187 L~~~gakmYGA~WCpHC~~qK~lFgk-eA~----~-~l~--yVEC~~dg~------------n~~~k~~~lC~~~~V~Gy 246 (278)
=.+..+++|+++|||+|+++.+.+.+ .+. + .+. +++++.+.. +-.....++.++++|+|+
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gt 83 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGT 83 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCcc
Confidence 34566889999999999999765543 111 1 233 344432110 000113578999999999
Q ss_pred ceeEE---CCE---EecCCCCHHHHHHHh
Q 023700 247 PTWVI---NGQ---VLSGEQDLSDLAKAS 269 (278)
Q Consensus 247 PTw~i---nGk---~y~G~rsle~La~~s 269 (278)
||+++ ||+ ++.|-.+.++|.+++
T Consensus 84 Pt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 84 PTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred CEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 99998 477 789999999998864
No 68
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.86 E-value=3.6e-08 Score=99.83 Aligned_cols=83 Identities=20% Similarity=0.254 Sum_probs=59.3
Q ss_pred HhhhcccceEEEccCCCHHHHHHHHh-hhhH----hhhcCcE--EEccCCCCCCCcccHHhhhhcCCcccceeEE---CC
Q 023700 184 AKHLHAIGAKMYGAFWCSHCLEQKQM-FGSE----AVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVI---NG 253 (278)
Q Consensus 184 AkhL~~~gakmYGA~WCpHC~~qK~l-Fgke----A~~~l~y--VEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i---nG 253 (278)
|+.-.+..++.|+|+||++|+++++. |..+ +.+++.+ ||++.+. .+..++.++++|+|+||..+ ||
T Consensus 470 a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~----~~~~~l~~~~~v~g~Pt~~~~~~~G 545 (571)
T PRK00293 470 AKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANN----AEDVALLKHYNVLGLPTILFFDAQG 545 (571)
T ss_pred HHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCC----hhhHHHHHHcCCCCCCEEEEECCCC
Confidence 44444667888999999999999875 5432 2334444 5665331 12468999999999999887 57
Q ss_pred E-----EecCCCCHHHHHHHhC
Q 023700 254 Q-----VLSGEQDLSDLAKASG 270 (278)
Q Consensus 254 k-----~y~G~rsle~La~~sG 270 (278)
+ ++.|..+.+++.++..
T Consensus 546 ~~i~~~r~~G~~~~~~f~~~L~ 567 (571)
T PRK00293 546 QEIPDARVTGFMDAAAFAAHLR 567 (571)
T ss_pred CCcccccccCCCCHHHHHHHHH
Confidence 5 4679999999988753
No 69
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=6.7e-09 Score=98.32 Aligned_cols=90 Identities=19% Similarity=0.283 Sum_probs=71.4
Q ss_pred CCCCHHHHHHHhhhcc-cceEEEccCCCHHHHHHHHhhhhHhhh-----cCcEEEccCCCCCCCcccHHhhhhcCCcccc
Q 023700 174 TSSSPFALSLAKHLHA-IGAKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFP 247 (278)
Q Consensus 174 ~~S~~~~~aLAkhL~~-~gakmYGA~WCpHC~~qK~lFgkeA~~-----~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyP 247 (278)
.++..++..+-+..++ ..++.||||||++|+++.|...+.+.. ++.+|||+.+ +++..++||+++|
T Consensus 28 vT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~--------p~vAaqfgiqsIP 99 (304)
T COG3118 28 VTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAE--------PMVAAQFGVQSIP 99 (304)
T ss_pred chHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcc--------hhHHHHhCcCcCC
Confidence 3445556666666555 788999999999999999999884322 3789999864 6899999999999
Q ss_pred eeEE--CCE---EecCCCCHHHHHHHhCC
Q 023700 248 TWVI--NGQ---VLSGEQDLSDLAKASGF 271 (278)
Q Consensus 248 Tw~i--nGk---~y~G~rsle~La~~sG~ 271 (278)
|.+. +|+ -+.|.+.-+.|.+|..-
T Consensus 100 tV~af~dGqpVdgF~G~qPesqlr~~ld~ 128 (304)
T COG3118 100 TVYAFKDGQPVDGFQGAQPESQLRQFLDK 128 (304)
T ss_pred eEEEeeCCcCccccCCCCcHHHHHHHHHH
Confidence 9765 998 47889998899988743
No 70
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.2e-08 Score=82.90 Aligned_cols=83 Identities=20% Similarity=0.354 Sum_probs=58.5
Q ss_pred HHHHHhhhcccceEEEccCCCHHHHHHHHhhhhHh--hhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE-
Q 023700 180 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ- 254 (278)
Q Consensus 180 ~~aLAkhL~~~gakmYGA~WCpHC~~qK~lFgkeA--~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk- 254 (278)
..+.++.-.+.-++.|+|.|||-|+.++|+|.+.| +.++.++.++-|. + .++|++++|+..||+.+ ||+
T Consensus 13 ~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde-~-----~~~~~~~~V~~~PTf~f~k~g~~ 86 (106)
T KOG0907|consen 13 VLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE-L-----EEVAKEFNVKAMPTFVFYKGGEE 86 (106)
T ss_pred HHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc-C-----HhHHHhcCceEeeEEEEEECCEE
Confidence 33444444456677888999999999999999965 3444444444332 2 48999999999999887 887
Q ss_pred --EecCCCCHHHHHHHh
Q 023700 255 --VLSGEQDLSDLAKAS 269 (278)
Q Consensus 255 --~y~G~rsle~La~~s 269 (278)
++.|.... +|.+..
T Consensus 87 ~~~~vGa~~~-~l~~~i 102 (106)
T KOG0907|consen 87 VDEVVGANKA-ELEKKI 102 (106)
T ss_pred EEEEecCCHH-HHHHHH
Confidence 56776443 665543
No 71
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.74 E-value=3.3e-08 Score=70.31 Aligned_cols=71 Identities=18% Similarity=0.214 Sum_probs=50.6
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEECCEEecCCCCHHHHHHH
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKA 268 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inGk~y~G~rsle~La~~ 268 (278)
+++|+++|||+|+++++++.+. ...+..++.+.+. . ...++.+..++.++|+++++|+.+.|.. .++|+++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-~i~~~~~~i~~~~--~--~~~~~~~~~~~~~vP~i~~~~~~i~g~~-~~~l~~~ 72 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-GIPFEEVDVDEDP--E--ALEELKKLNGYRSVPVVVIGDEHLSGFR-PDKLRAL 72 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-CCCeEEEeCCCCH--H--HHHHHHHHcCCcccCEEEECCEEEecCC-HHHHHhh
Confidence 6899999999999999999763 2234455655432 1 1234444458999999999999888875 4677765
No 72
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.69 E-value=6e-08 Score=70.53 Aligned_cols=70 Identities=17% Similarity=0.349 Sum_probs=47.3
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhh--cCCcccceeEE-CCEEecCCCCHHHHHHH
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSD--AKIEGFPTWVI-NGQVLSGEQDLSDLAKA 268 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~--~~V~GyPTw~i-nGk~y~G~rsle~La~~ 268 (278)
+++|+++|||+|++.++++.+.. ..+.+||.+.+. . ..+.-++ .++.+.|++++ ||+... .-+.++|++.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~-~~~~~idi~~~~--~---~~~~~~~~~~~~~~vP~i~~~~g~~l~-~~~~~~~~~~ 74 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG-AAYEWVDIEEDE--G---AADRVVSVNNGNMTVPTVKFADGSFLT-NPSAAQVKAK 74 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC-CceEEEeCcCCH--h---HHHHHHHHhCCCceeCEEEECCCeEec-CCCHHHHHHH
Confidence 68999999999999999998742 245567776442 1 1122211 38999999988 555444 6666777654
No 73
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.69 E-value=4.9e-08 Score=79.52 Aligned_cols=72 Identities=17% Similarity=0.243 Sum_probs=49.6
Q ss_pred HHHHHHHhhhcccceEEEccCCCHHHHHHHHhhhhHhh---hcCcEEEccCCCCCCCcccHHhhhhcCCcc--cceeEE-
Q 023700 178 PFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV---KQLNYVECFPDGYRKGTKIAKACSDAKIEG--FPTWVI- 251 (278)
Q Consensus 178 ~~~~aLAkhL~~~gakmYGA~WCpHC~~qK~lFgkeA~---~~l~yVEC~~dg~n~~~k~~~lC~~~~V~G--yPTw~i- 251 (278)
..+++.|+.-.+..++.|+|+||++|+.+++.|.+.+. ....+|.++-+. ++ ...-+++++.| +||+++
T Consensus 9 ~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~-~~----~~~~~~~~~~g~~vPt~~f~ 83 (117)
T cd02959 9 EDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLED-DE----EPKDEEFSPDGGYIPRILFL 83 (117)
T ss_pred HHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecC-CC----CchhhhcccCCCccceEEEE
Confidence 45677777777888999999999999999998877321 123455444332 11 12345788987 999887
Q ss_pred --CCE
Q 023700 252 --NGQ 254 (278)
Q Consensus 252 --nGk 254 (278)
||+
T Consensus 84 ~~~Gk 88 (117)
T cd02959 84 DPSGD 88 (117)
T ss_pred CCCCC
Confidence 665
No 74
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=7e-08 Score=83.56 Aligned_cols=92 Identities=15% Similarity=0.185 Sum_probs=67.1
Q ss_pred ccCCCCHHHHHHHhhhcccceEEEccCCCHHHHHHHHhhhhHhhh---cCcEEEccCCCCCCCcccHHhhhhcCCcccce
Q 023700 172 ITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK---QLNYVECFPDGYRKGTKIAKACSDAKIEGFPT 248 (278)
Q Consensus 172 it~~S~~~~~aLAkhL~~~gakmYGA~WCpHC~~qK~lFgkeA~~---~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPT 248 (278)
+-..|...-.++...-....+++|+|.||+-|+.+.|...+-+.+ ++.+.-.+.|. ..++..+++|+.+||
T Consensus 45 ~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~------~~ela~~Y~I~avPt 118 (150)
T KOG0910|consen 45 FNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDE------HPELAEDYEISAVPT 118 (150)
T ss_pred ccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcccc------ccchHhhcceeeeeE
Confidence 333445555555556666789999999999999999998874322 23333333332 469999999999999
Q ss_pred eEE--CCE---EecCCCCHHHHHHHh
Q 023700 249 WVI--NGQ---VLSGEQDLSDLAKAS 269 (278)
Q Consensus 249 w~i--nGk---~y~G~rsle~La~~s 269 (278)
.++ ||+ +..|..+.+.|.++.
T Consensus 119 vlvfknGe~~d~~vG~~~~~~l~~~i 144 (150)
T KOG0910|consen 119 VLVFKNGEKVDRFVGAVPKEQLRSLI 144 (150)
T ss_pred EEEEECCEEeeeecccCCHHHHHHHH
Confidence 887 997 578999988887764
No 75
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.66 E-value=9.3e-08 Score=79.33 Aligned_cols=80 Identities=14% Similarity=0.215 Sum_probs=56.2
Q ss_pred ccceEEEcc-------CCCHHHHHHHHhhhhHh--hh-cCcEEEccCCCCC-CCcccHHhhhhcCCc-ccceeEE--CCE
Q 023700 189 AIGAKMYGA-------FWCSHCLEQKQMFGSEA--VK-QLNYVECFPDGYR-KGTKIAKACSDAKIE-GFPTWVI--NGQ 254 (278)
Q Consensus 189 ~~gakmYGA-------~WCpHC~~qK~lFgkeA--~~-~l~yVEC~~dg~n-~~~k~~~lC~~~~V~-GyPTw~i--nGk 254 (278)
+..++.|+| +|||+|+.++|.+.+.+ +. ++.++.|+.+... -..+..++-++++|+ ++||+++ +|+
T Consensus 22 ~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~ 101 (119)
T cd02952 22 KPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQ 101 (119)
T ss_pred CeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCc
Confidence 456788889 99999999999887742 33 4666666654210 001135888999999 9999988 777
Q ss_pred EecCCC--CHHHHHHH
Q 023700 255 VLSGEQ--DLSDLAKA 268 (278)
Q Consensus 255 ~y~G~r--sle~La~~ 268 (278)
++.|.. +.+.|..+
T Consensus 102 ~l~~~~c~~~~~~~~~ 117 (119)
T cd02952 102 RLVEDECLQADLVEMF 117 (119)
T ss_pred eecchhhcCHHHHHHh
Confidence 888776 55555554
No 76
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.66 E-value=1.4e-08 Score=96.93 Aligned_cols=78 Identities=21% Similarity=0.344 Sum_probs=64.3
Q ss_pred cccceEEEccCCCHHHHHHHHhhhhHhhh---c-------CcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE-
Q 023700 188 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK---Q-------LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ- 254 (278)
Q Consensus 188 ~~~gakmYGA~WCpHC~~qK~lFgkeA~~---~-------l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk- 254 (278)
.+...+-|+|.||+--+.++|.|.+.|.+ + ...|||+.+ .++..++.|.-|||+++ ||+
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e--------~~ia~ky~I~KyPTlKvfrnG~~ 84 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE--------DDIADKYHINKYPTLKVFRNGEM 84 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh--------hHHhhhhccccCceeeeeeccch
Confidence 34556778899999999999999985422 1 358999864 59999999999999998 986
Q ss_pred ---EecCCCCHHHHHHHhCCCC
Q 023700 255 ---VLSGEQDLSDLAKASGFPE 273 (278)
Q Consensus 255 ---~y~G~rsle~La~~sG~~g 273 (278)
+|.|.|+.+.|.++...+-
T Consensus 85 ~~rEYRg~RsVeaL~efi~kq~ 106 (375)
T KOG0912|consen 85 MKREYRGQRSVEALIEFIEKQL 106 (375)
T ss_pred hhhhhccchhHHHHHHHHHHHh
Confidence 7999999999999876553
No 77
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.66 E-value=1.3e-07 Score=80.89 Aligned_cols=76 Identities=13% Similarity=0.154 Sum_probs=54.6
Q ss_pred cccceEEEccCCCHHHHHHHHhhhhHh--hhc-CcEEEccCCCCCCCcccHHhhhhcCCcccceeE-E--CCE----Eec
Q 023700 188 HAIGAKMYGAFWCSHCLEQKQMFGSEA--VKQ-LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWV-I--NGQ----VLS 257 (278)
Q Consensus 188 ~~~gakmYGA~WCpHC~~qK~lFgkeA--~~~-l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~-i--nGk----~y~ 257 (278)
....++-|||.|||+|+.+.|.|.+-| +.+ ..++.++.|. .+++.++++|++.||.+ + ||+ +..
T Consensus 23 ~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe------~~dla~~y~I~~~~t~~~ffk~g~~~vd~~t 96 (142)
T PLN00410 23 ERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITE------VPDFNTMYELYDPCTVMFFFRNKHIMIDLGT 96 (142)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCC------CHHHHHHcCccCCCcEEEEEECCeEEEEEec
Confidence 334577888999999999999998854 333 3334444442 36999999999887655 4 887 467
Q ss_pred C--------CCCHHHHHHHh
Q 023700 258 G--------EQDLSDLAKAS 269 (278)
Q Consensus 258 G--------~rsle~La~~s 269 (278)
| ..+.++|.+..
T Consensus 97 G~~~k~~~~~~~k~~l~~~i 116 (142)
T PLN00410 97 GNNNKINWALKDKQEFIDIV 116 (142)
T ss_pred ccccccccccCCHHHHHHHH
Confidence 8 57777877654
No 78
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.64 E-value=5.2e-08 Score=92.15 Aligned_cols=77 Identities=22% Similarity=0.395 Sum_probs=58.2
Q ss_pred cccceEEEccCCCHHHHHHHHhhhhHh--hh----c--CcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE---
Q 023700 188 HAIGAKMYGAFWCSHCLEQKQMFGSEA--VK----Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--- 254 (278)
Q Consensus 188 ~~~gakmYGA~WCpHC~~qK~lFgkeA--~~----~--l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk--- 254 (278)
...-+++|+|+||+||++++|.|.+.+ ++ . +.+|||+.+ ++.. ++|++|||+.+ +|+
T Consensus 364 ~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n---------~~~~-~~i~~~Pt~~~~~~~~~~~ 433 (462)
T TIGR01130 364 TKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN---------DVPP-FEVEGFPTIKFVPAGKKSE 433 (462)
T ss_pred CCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC---------ccCC-CCccccCEEEEEeCCCCcC
Confidence 445578899999999999999987732 22 2 346777643 2233 89999999888 442
Q ss_pred --EecCCCCHHHHHHHhCCCCC
Q 023700 255 --VLSGEQDLSDLAKASGFPEM 274 (278)
Q Consensus 255 --~y~G~rsle~La~~sG~~g~ 274 (278)
+|.|.++.++|.++.....+
T Consensus 434 ~~~~~g~~~~~~l~~~l~~~~~ 455 (462)
T TIGR01130 434 PVPYDGDRTLEDFSKFIAKHAT 455 (462)
T ss_pred ceEecCcCCHHHHHHHHHhcCC
Confidence 58999999999999877654
No 79
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.61 E-value=1.3e-07 Score=75.57 Aligned_cols=85 Identities=16% Similarity=0.117 Sum_probs=53.3
Q ss_pred HHHHhhhcccceEEEccCCCHHHHHHHHhhhhHhhhc-CcEEEccCCCCC--------------C---CcccHHhhhhcC
Q 023700 181 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQ-LNYVECFPDGYR--------------K---GTKIAKACSDAK 242 (278)
Q Consensus 181 ~aLAkhL~~~gakmYGA~WCpHC~~qK~lFgkeA~~~-l~yVEC~~dg~n--------------~---~~k~~~lC~~~~ 242 (278)
+.++..-.+.-+++|+|.|||+|+++.+.+.+.+... +..|....+... . -....+++++++
T Consensus 18 ~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 97 (127)
T cd03010 18 LTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLG 97 (127)
T ss_pred ccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcC
Confidence 4555444556678888999999999998887632111 333322211000 0 001347889999
Q ss_pred Ccccce-eEE--CCE---EecCCCCHHHH
Q 023700 243 IEGFPT-WVI--NGQ---VLSGEQDLSDL 265 (278)
Q Consensus 243 V~GyPT-w~i--nGk---~y~G~rsle~L 265 (278)
|.++|+ .++ +|+ ++.|..+.++|
T Consensus 98 v~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 98 VYGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CCCCCeEEEECCCceEEEEEeccCChHhc
Confidence 999995 445 676 57899887765
No 80
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.59 E-value=9.4e-08 Score=70.81 Aligned_cols=74 Identities=18% Similarity=0.209 Sum_probs=53.7
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEECCEEecCCCCHHHHHH
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAK 267 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inGk~y~G~rsle~La~ 267 (278)
+++|+++|||+|++.+++|.+.. ..+.+++.+.+.... .-+..+-+..|+..+|+..+||+..-|..++.++.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~-~~~~~~~v~~~~~~~-~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~ 75 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELG-VKPAVVELDQHEDGS-EIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHK 75 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcC-CCcEEEEEeCCCChH-HHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHH
Confidence 68999999999999999999853 356677777653111 001233445689999999999998887777766654
No 81
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=6.1e-08 Score=92.68 Aligned_cols=81 Identities=21% Similarity=0.293 Sum_probs=61.9
Q ss_pred HHhhhcccceEEEccCCCHHHHHHHHhhhhHhh-----h--cCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CC
Q 023700 183 LAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV-----K--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG 253 (278)
Q Consensus 183 LAkhL~~~gakmYGA~WCpHC~~qK~lFgkeA~-----~--~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nG 253 (278)
+.+..++.-+++|+||||+||+++++.|.+.+. . .+..++|+. ...+|.+++|++|||.++ +|
T Consensus 157 ~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~--------~~~~~~~~~v~~~Pt~~~f~~~ 228 (383)
T KOG0191|consen 157 TVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATV--------HKSLASRLEVRGYPTLKLFPPG 228 (383)
T ss_pred hhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccch--------HHHHhhhhcccCCceEEEecCC
Confidence 344445555788889999999999999988542 1 244677762 368999999999999987 33
Q ss_pred ----EEecCCCCHHHHHHHhCC
Q 023700 254 ----QVLSGEQDLSDLAKASGF 271 (278)
Q Consensus 254 ----k~y~G~rsle~La~~sG~ 271 (278)
+.|.|.|+.+.|.+|.--
T Consensus 229 ~~~~~~~~~~R~~~~i~~~v~~ 250 (383)
T KOG0191|consen 229 EEDIYYYSGLRDSDSIVSFVEK 250 (383)
T ss_pred CcccccccccccHHHHHHHHHh
Confidence 468999999999998754
No 82
>PHA03050 glutaredoxin; Provisional
Probab=98.55 E-value=2.3e-07 Score=75.41 Aligned_cols=84 Identities=11% Similarity=0.101 Sum_probs=59.0
Q ss_pred HHHhhhcccceEEEccCCCHHHHHHHHhhhhHhh--hcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEECCEEecCC
Q 023700 182 SLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGE 259 (278)
Q Consensus 182 aLAkhL~~~gakmYGA~WCpHC~~qK~lFgkeA~--~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inGk~y~G~ 259 (278)
.+-+.+++..+++|..+|||+|++.|.+|.+... ..+..+|.+..+.+.. -+.++=+..|-+..|+.+|||+.+-|-
T Consensus 5 ~v~~~i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~-~~~~l~~~tG~~tVP~IfI~g~~iGG~ 83 (108)
T PHA03050 5 FVQQRLANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENE-LRDYFEQITGGRTVPRIFFGKTSIGGY 83 (108)
T ss_pred HHHHHhccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHH-HHHHHHHHcCCCCcCEEEECCEEEeCh
Confidence 3445567778999999999999999999987422 1355677774321111 123444446888999999999988887
Q ss_pred CCHHHHH
Q 023700 260 QDLSDLA 266 (278)
Q Consensus 260 rsle~La 266 (278)
.++.+|.
T Consensus 84 ddl~~l~ 90 (108)
T PHA03050 84 SDLLEID 90 (108)
T ss_pred HHHHHHH
Confidence 6666654
No 83
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.54 E-value=1.6e-07 Score=74.72 Aligned_cols=80 Identities=11% Similarity=0.116 Sum_probs=57.1
Q ss_pred hhhcccceEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEECCEEecCCCCHHH
Q 023700 185 KHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSD 264 (278)
Q Consensus 185 khL~~~gakmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inGk~y~G~rsle~ 264 (278)
+.+++.-+++|+.+|||+|++.|.+|.+. ...+.+||.+.+.... ..+..+-+..|.+.+|..+|||+..-|-.++.+
T Consensus 3 ~~i~~~~Vvvysk~~Cp~C~~ak~~L~~~-~i~~~~vdid~~~~~~-~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~ 80 (99)
T TIGR02189 3 RMVSEKAVVIFSRSSCCMCHVVKRLLLTL-GVNPAVHEIDKEPAGK-DIENALSRLGCSPAVPAVFVGGKLVGGLENVMA 80 (99)
T ss_pred hhhccCCEEEEECCCCHHHHHHHHHHHHc-CCCCEEEEcCCCccHH-HHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHH
Confidence 34566779999999999999999999874 3345678887542111 011233333578899999999998888877666
Q ss_pred HH
Q 023700 265 LA 266 (278)
Q Consensus 265 La 266 (278)
|.
T Consensus 81 l~ 82 (99)
T TIGR02189 81 LH 82 (99)
T ss_pred HH
Confidence 54
No 84
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.54 E-value=1.1e-07 Score=67.00 Aligned_cols=70 Identities=20% Similarity=0.329 Sum_probs=50.9
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEECCEEecCCCCHHHHH
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLA 266 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inGk~y~G~rsle~La 266 (278)
+++|+++|||+|++.+++|.+.. ..+..+|...+.. ...++-+..+...+|++++||+.+.|..++.+|.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-i~~~~~di~~~~~----~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~~ 71 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-IEFEEIDILEDGE----LREELKELSGWPTVPQIFINGEFIGGYDDLKALH 71 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-CcEEEEECCCCHH----HHHHHHHHhCCCCcCEEEECCEEEecHHHHHHhh
Confidence 68999999999999999998842 2334555554321 1234455568889999999999998886666653
No 85
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.54 E-value=6.3e-07 Score=74.79 Aligned_cols=89 Identities=16% Similarity=0.171 Sum_probs=59.3
Q ss_pred HHHHhhhcccceEEEccCCCHHHHHHHHhhhhHh--hh--cCc--EEEccCCCCC-------C-------CcccHHhhhh
Q 023700 181 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--VK--QLN--YVECFPDGYR-------K-------GTKIAKACSD 240 (278)
Q Consensus 181 ~aLAkhL~~~gakmYGA~WCpHC~~qK~lFgkeA--~~--~l~--yVEC~~dg~n-------~-------~~k~~~lC~~ 240 (278)
+.+++.-.+.-+++|+|+|||+|+++.+.|.+.+ ++ .+. .|+++.+... . -....+++++
T Consensus 54 ~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 133 (173)
T PRK03147 54 IELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDA 133 (173)
T ss_pred EeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHH
Confidence 3555544455677888999999999988776632 22 133 4555422100 0 0013588999
Q ss_pred cCCcccceeEE---CCE---EecCCCCHHHHHHHh
Q 023700 241 AKIEGFPTWVI---NGQ---VLSGEQDLSDLAKAS 269 (278)
Q Consensus 241 ~~V~GyPTw~i---nGk---~y~G~rsle~La~~s 269 (278)
++|+++|+.++ ||+ .+.|..+.++|.+++
T Consensus 134 ~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l 168 (173)
T PRK03147 134 YGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYL 168 (173)
T ss_pred cCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 99999998665 677 579999999998765
No 86
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.53 E-value=1.8e-07 Score=71.24 Aligned_cols=73 Identities=18% Similarity=0.358 Sum_probs=50.7
Q ss_pred ceEEEccCCCHHHHHHHHhhhhHhh--hcCcE--EEccCCCCCCCcccHHhhhh--cCCcccceeEECCEEecCCCCHHH
Q 023700 191 GAKMYGAFWCSHCLEQKQMFGSEAV--KQLNY--VECFPDGYRKGTKIAKACSD--AKIEGFPTWVINGQVLSGEQDLSD 264 (278)
Q Consensus 191 gakmYGA~WCpHC~~qK~lFgkeA~--~~l~y--VEC~~dg~n~~~k~~~lC~~--~~V~GyPTw~inGk~y~G~rsle~ 264 (278)
.+++|+.+|||+|++.++++.+.+. ..+.| +|.+.++.. ..++-+. .+++.+|+.+|||+...|-.++.+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~----~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~ 77 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGIS----KADLEKTVGKPVETVPQIFVDQKHIGGCTDFEA 77 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHH----HHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHH
Confidence 4789999999999999999988322 34555 444433211 1233222 356899999999999888877777
Q ss_pred HHH
Q 023700 265 LAK 267 (278)
Q Consensus 265 La~ 267 (278)
+.+
T Consensus 78 ~~~ 80 (85)
T PRK11200 78 YVK 80 (85)
T ss_pred HHH
Confidence 654
No 87
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.52 E-value=2.8e-07 Score=76.64 Aligned_cols=73 Identities=15% Similarity=0.106 Sum_probs=51.5
Q ss_pred CHHHHHHHhhhcccceEEEccCCCHHHHHHHH-hhhhHh-----hhcCcEEEccCCCCCCCcccHHhhh--------hcC
Q 023700 177 SPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGSEA-----VKQLNYVECFPDGYRKGTKIAKACS--------DAK 242 (278)
Q Consensus 177 ~~~~~aLAkhL~~~gakmYGA~WCpHC~~qK~-lFgkeA-----~~~l~yVEC~~dg~n~~~k~~~lC~--------~~~ 242 (278)
++.+++.|+.-.+.-++.|+|.||+.|+.+++ .|.+.. .+++-.|..+.+. + +++.+ .++
T Consensus 4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~-~-----~~~~~~~~~~~~~~~~ 77 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREE-R-----PDVDKIYMNAAQAMTG 77 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCc-C-----cHHHHHHHHHHHHhcC
Confidence 45678888888888889999999999999975 676622 1234456665543 2 23333 258
Q ss_pred CcccceeEE---CCEE
Q 023700 243 IEGFPTWVI---NGQV 255 (278)
Q Consensus 243 V~GyPTw~i---nGk~ 255 (278)
+.|+||+++ +|+.
T Consensus 78 ~~G~Pt~vfl~~~G~~ 93 (124)
T cd02955 78 QGGWPLNVFLTPDLKP 93 (124)
T ss_pred CCCCCEEEEECCCCCE
Confidence 999999888 6763
No 88
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.51 E-value=1.8e-06 Score=74.83 Aligned_cols=82 Identities=17% Similarity=0.182 Sum_probs=53.2
Q ss_pred cccceEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCC-----------------cccHHhhhhcCCcccce-e
Q 023700 188 HAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKG-----------------TKIAKACSDAKIEGFPT-W 249 (278)
Q Consensus 188 ~~~gakmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~-----------------~k~~~lC~~~~V~GyPT-w 249 (278)
.+..++.|+|.|||+|+++.|.+.+-+.+.+..|-...+..... ....++.++++|.++|| +
T Consensus 68 gk~vvv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P~t~ 147 (185)
T PRK15412 68 GKPVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETF 147 (185)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCCeEE
Confidence 45567888899999999999988664323344333322110000 01224677899999995 5
Q ss_pred EE--CCE---EecCCCCHHHHHHHh
Q 023700 250 VI--NGQ---VLSGEQDLSDLAKAS 269 (278)
Q Consensus 250 ~i--nGk---~y~G~rsle~La~~s 269 (278)
+| ||+ ++.|..+.++|.++.
T Consensus 148 vid~~G~i~~~~~G~~~~~~l~~~i 172 (185)
T PRK15412 148 LIDGNGIIRYRHAGDLNPRVWESEI 172 (185)
T ss_pred EECCCceEEEEEecCCCHHHHHHHH
Confidence 56 676 688999888876643
No 89
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.50 E-value=1.2e-06 Score=74.86 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=52.3
Q ss_pred cccceEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCC-----------------cccHHhhhhcCCcccce-e
Q 023700 188 HAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKG-----------------TKIAKACSDAKIEGFPT-W 249 (278)
Q Consensus 188 ~~~gakmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~-----------------~k~~~lC~~~~V~GyPT-w 249 (278)
.+.-+++|+|.|||+|+++.+.+.+-+.+.+..|-.+.+....+ .+..++.++++|.++|+ .
T Consensus 63 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P~~~ 142 (173)
T TIGR00385 63 GKPVLLNVWASWCPPCRAEHPYLNELAKDGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAPETF 142 (173)
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCCeEE
Confidence 45667888899999999998877653222233222221110000 00236677899999995 5
Q ss_pred EE--CCE---EecCCCCHHHHHHHh
Q 023700 250 VI--NGQ---VLSGEQDLSDLAKAS 269 (278)
Q Consensus 250 ~i--nGk---~y~G~rsle~La~~s 269 (278)
+| ||+ ++.|..+.++|.++.
T Consensus 143 ~id~~G~i~~~~~G~~~~~~l~~~l 167 (173)
T TIGR00385 143 LVDGNGVILYRHAGPLNNEVWTEGF 167 (173)
T ss_pred EEcCCceEEEEEeccCCHHHHHHHH
Confidence 56 687 578999988887754
No 90
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.50 E-value=3.1e-07 Score=76.28 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=47.5
Q ss_pred cccceEEEccCCCHHHHHHHHhhhhHh--hhc-CcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE
Q 023700 188 HAIGAKMYGAFWCSHCLEQKQMFGSEA--VKQ-LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ 254 (278)
Q Consensus 188 ~~~gakmYGA~WCpHC~~qK~lFgkeA--~~~-l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk 254 (278)
.+..++-|+|.|||.|+.+.|.|.+.| +++ +.+..|+.|. .++++++++|+..||.++ ||+
T Consensus 14 ~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDe------v~dva~~y~I~amPtfvffkngk 79 (114)
T cd02986 14 EKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDK------VPVYTQYFDISYIPSTIFFFNGQ 79 (114)
T ss_pred CCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccc------cHHHHHhcCceeCcEEEEEECCc
Confidence 455677899999999999999999865 334 4455555443 469999999999999776 776
No 91
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.50 E-value=2e-07 Score=69.51 Aligned_cols=71 Identities=17% Similarity=0.247 Sum_probs=54.3
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEECCEEecCCCCHHHHHH
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAK 267 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inGk~y~G~rsle~La~ 267 (278)
+++|+.+|||+|++.+.+|.+. ...+.++|++.+.. .+.++-+..+...+|+.++||+..-|-.++.+|.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-~i~~~~~di~~~~~----~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~ 71 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-GVTFTEIRVDGDPA----LRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDR 71 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-CCCcEEEEecCCHH----HHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHH
Confidence 4799999999999999999874 23456777765421 13344455688999999999999988888887764
No 92
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.47 E-value=2.5e-07 Score=69.92 Aligned_cols=71 Identities=13% Similarity=0.197 Sum_probs=51.6
Q ss_pred ccceEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEECCEEecCCCCHHHHHHH
Q 023700 189 AIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKA 268 (278)
Q Consensus 189 ~~gakmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inGk~y~G~rsle~La~~ 268 (278)
+..+++|+.+|||+|++.|.+|.+. ...+..||++.+. . ..++-+..+.+.+|..++||+..-|- ++|.++
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~-gi~y~~idi~~~~--~---~~~~~~~~g~~~vP~i~i~g~~igG~---~~l~~~ 77 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK-GYDFEEIPLGNDA--R---GRSLRAVTGATTVPQVFIGGKLIGGS---DELEAY 77 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc-CCCcEEEECCCCh--H---HHHHHHHHCCCCcCeEEECCEEEcCH---HHHHHH
Confidence 4568999999999999999999863 2334456665442 1 23555557899999999999987776 444444
No 93
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.47 E-value=4.8e-07 Score=78.86 Aligned_cols=58 Identities=9% Similarity=0.112 Sum_probs=45.8
Q ss_pred cceEEEccCCCHHHHHHHHhhhhHhhh--cCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE
Q 023700 190 IGAKMYGAFWCSHCLEQKQMFGSEAVK--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ 254 (278)
Q Consensus 190 ~gakmYGA~WCpHC~~qK~lFgkeA~~--~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk 254 (278)
..++.|+|+||++|+.+.+.|.+.|.+ .+.++.++.+. . +++.+++|++.||+++ ||+
T Consensus 85 ~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~------~-~l~~~f~v~~vPTlllyk~G~ 146 (175)
T cd02987 85 TVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASA------T-GASDEFDTDALPALLVYKGGE 146 (175)
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccc------h-hhHHhCCCCCCCEEEEEECCE
Confidence 457788899999999999999886533 35566655441 2 7899999999999887 887
No 94
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.44 E-value=7.2e-07 Score=82.83 Aligned_cols=90 Identities=12% Similarity=0.088 Sum_probs=60.3
Q ss_pred HHHHHhhhcccceEEEccCCCHHHHHHHHhhhhHhhh-cC--cEEEccCCCCC---CCcccHHhhhhcCCcccceeEE--
Q 023700 180 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK-QL--NYVECFPDGYR---KGTKIAKACSDAKIEGFPTWVI-- 251 (278)
Q Consensus 180 ~~aLAkhL~~~gakmYGA~WCpHC~~qK~lFgkeA~~-~l--~yVEC~~dg~n---~~~k~~~lC~~~~V~GyPTw~i-- 251 (278)
...+++.-.+.++++|+|.|||+|+++.|.+.+-+.+ .+ -.|+.+.+... .-.....+.+++||+++||.++
T Consensus 158 ~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~ 237 (271)
T TIGR02740 158 DRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLAD 237 (271)
T ss_pred HHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEE
Confidence 3556555567889999999999999999988764321 23 34555432100 0001246788999999999887
Q ss_pred -CCE----EecCCCCHHHHHHHh
Q 023700 252 -NGQ----VLSGEQDLSDLAKAS 269 (278)
Q Consensus 252 -nGk----~y~G~rsle~La~~s 269 (278)
||+ ...|..+.++|.+..
T Consensus 238 ~~~~~v~~v~~G~~s~~eL~~~i 260 (271)
T TIGR02740 238 PDPNQFTPIGFGVMSADELVDRI 260 (271)
T ss_pred CCCCEEEEEEeCCCCHHHHHHHH
Confidence 343 356999999987654
No 95
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.42 E-value=5e-07 Score=66.15 Aligned_cols=71 Identities=15% Similarity=0.240 Sum_probs=51.9
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCc-ccceeEECCEEecCCCCHHHHHH
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIE-GFPTWVINGQVLSGEQDLSDLAK 267 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~-GyPTw~inGk~y~G~rsle~La~ 267 (278)
+++|+.+|||+|++.+.+|.+. ...+.++|.+.+. . ...++=+..+.. ++|+.++||+..-|-.++.+|.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-~i~~~~i~i~~~~---~-~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-GVDYEEIDVDGDP---A-LREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-CCcEEEEECCCCH---H-HHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHh
Confidence 6899999999999999999874 2234456665431 1 123344445766 99999999999999888888764
No 96
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.42 E-value=8.8e-07 Score=69.99 Aligned_cols=87 Identities=16% Similarity=0.103 Sum_probs=55.9
Q ss_pred HHHHhhhcccceEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCC-----------------CcccHHhhhhcCC
Q 023700 181 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRK-----------------GTKIAKACSDAKI 243 (278)
Q Consensus 181 ~aLAkhL~~~gakmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~-----------------~~k~~~lC~~~~V 243 (278)
++++..-.+..++.|+|.|||+|+.+.+.+.+.+ +++..+-...+..+. ..+..++++.++|
T Consensus 13 ~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~-~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i 91 (123)
T cd03011 13 FDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLA-ADYPVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGV 91 (123)
T ss_pred eeHHHhCCCEEEEEEECCcChhhhhhChHHHHHH-hhCCEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCC
Confidence 3444433456778888999999999988876532 223322221110000 0012479999999
Q ss_pred cccceeEE---CCE--EecCCCCHHHHHHH
Q 023700 244 EGFPTWVI---NGQ--VLSGEQDLSDLAKA 268 (278)
Q Consensus 244 ~GyPTw~i---nGk--~y~G~rsle~La~~ 268 (278)
.++||..+ +|. ++.|..+.++|.+.
T Consensus 92 ~~~P~~~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 92 SVTPAIVIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred CcccEEEEEcCCCeEEEEeccCCHHHHHhh
Confidence 99999887 454 58899999999764
No 97
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.41 E-value=3.7e-07 Score=65.12 Aligned_cols=59 Identities=15% Similarity=0.206 Sum_probs=44.4
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEECCEE
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV 255 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inGk~ 255 (278)
+++|+.+|||+|++.|.+|.+. ...+.++|.+.+.. ...++-+..+..++|+.++||+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~-~i~y~~~dv~~~~~----~~~~l~~~~g~~~~P~v~i~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK-GIPYEEVDVDEDEE----AREELKELSGVRTVPQVFIDGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-TBEEEEEEGGGSHH----HHHHHHHHHSSSSSSEEEETTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc-CCeeeEcccccchh----HHHHHHHHcCCCccCEEEECCEE
Confidence 5799999999999999999763 23456788876521 13344444599999999999974
No 98
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.39 E-value=1.5e-06 Score=87.78 Aligned_cols=83 Identities=18% Similarity=0.320 Sum_probs=56.1
Q ss_pred cccceEEEccCCCHHHHHHHHhhhhHh--hh--cCcEEEccCCCCC----------------------CCcccHHhhhhc
Q 023700 188 HAIGAKMYGAFWCSHCLEQKQMFGSEA--VK--QLNYVECFPDGYR----------------------KGTKIAKACSDA 241 (278)
Q Consensus 188 ~~~gakmYGA~WCpHC~~qK~lFgkeA--~~--~l~yVEC~~dg~n----------------------~~~k~~~lC~~~ 241 (278)
.+..++.|+|.|||+|+++.|.+.+.+ ++ .+..|-+..++.+ --.+..++.+++
T Consensus 56 GKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~f 135 (521)
T PRK14018 56 DKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQSL 135 (521)
T ss_pred CCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHHc
Confidence 355688899999999999999887632 22 2333322110000 000134788999
Q ss_pred CCcccceeE-E--CCE---EecCCCCHHHHHHHhC
Q 023700 242 KIEGFPTWV-I--NGQ---VLSGEQDLSDLAKASG 270 (278)
Q Consensus 242 ~V~GyPTw~-i--nGk---~y~G~rsle~La~~sG 270 (278)
+|+++||.+ | ||+ ++.|..+.++|.++..
T Consensus 136 gV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 136 NISVYPSWAIIGKDGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred CCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 999999985 4 687 5899999999988765
No 99
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.39 E-value=3.6e-07 Score=67.57 Aligned_cols=70 Identities=14% Similarity=0.182 Sum_probs=52.3
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEECCEEecCCCCHHHHH
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLA 266 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inGk~y~G~rsle~La 266 (278)
+++|+.+|||+|++.+.+|.+. ...+.++|+..+.. ...++-+..+-..+|+.++||+.+-|-.++.+|.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-gi~~~~~di~~~~~----~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~~~ 72 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-GLPYVEINIDIFPE----RKAELEERTGSSVVPQIFFNEKLVGGLTDLKSLE 72 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-CCceEEEECCCCHH----HHHHHHHHhCCCCcCEEEECCEEEeCHHHHHhhc
Confidence 6799999999999999999973 23455677764421 1345555567789999999999888877776654
No 100
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.39 E-value=6e-07 Score=69.27 Aligned_cols=74 Identities=18% Similarity=0.275 Sum_probs=49.8
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhh--cCcEEEccCCCCCCCcccHHhhhhcC--CcccceeEECCEEecCCCCHHHHHH
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVK--QLNYVECFPDGYRKGTKIAKACSDAK--IEGFPTWVINGQVLSGEQDLSDLAK 267 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~--~l~yVEC~~dg~n~~~k~~~lC~~~~--V~GyPTw~inGk~y~G~rsle~La~ 267 (278)
+++|+.+|||+|++.|.++.+.... .+.|.+.+-+..... ..++-+..+ ++..|+.++||+.+-|-.++.++.+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~--~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~ 79 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGIS--KADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVK 79 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHH--HHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHH
Confidence 6899999999999999999874321 355544443221110 123333334 5899999999999888877777654
No 101
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.36 E-value=1.5e-06 Score=77.03 Aligned_cols=72 Identities=15% Similarity=0.107 Sum_probs=53.0
Q ss_pred cceEEEccCCCHHHHHHHHhhhhHhh--hcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE---EecCC---
Q 023700 190 IGAKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE--- 259 (278)
Q Consensus 190 ~gakmYGA~WCpHC~~qK~lFgkeA~--~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk---~y~G~--- 259 (278)
..++.|+|+||++|+.+.+.|.+.|. ..+.+|.++.+ +....++|++.||+++ ||+ ++.|.
T Consensus 104 ~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad---------~~~~~~~i~~lPTlliyk~G~~v~~ivG~~~~ 174 (192)
T cd02988 104 WVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIIST---------QCIPNYPDKNLPTILVYRNGDIVKQFIGLLEF 174 (192)
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhH---------HhHhhCCCCCCCEEEEEECCEEEEEEeCchhh
Confidence 35678889999999999999998663 34667777643 2256799999999888 887 45553
Q ss_pred ----CCHHHHHHHhC
Q 023700 260 ----QDLSDLAKASG 270 (278)
Q Consensus 260 ----rsle~La~~sG 270 (278)
-+.++|..++.
T Consensus 175 gg~~~~~~~lE~~L~ 189 (192)
T cd02988 175 GGMNTTMEDLEWLLV 189 (192)
T ss_pred CCCCCCHHHHHHHHH
Confidence 44566665543
No 102
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.36 E-value=1.2e-06 Score=67.28 Aligned_cols=76 Identities=17% Similarity=0.096 Sum_probs=55.8
Q ss_pred ccceEEEccCCCHHHHHHHHhhhhHhhh---cCcEEEccCCCCCCCcccHHhhhhcCCc--ccceeEE--C--CEEe---
Q 023700 189 AIGAKMYGAFWCSHCLEQKQMFGSEAVK---QLNYVECFPDGYRKGTKIAKACSDAKIE--GFPTWVI--N--GQVL--- 256 (278)
Q Consensus 189 ~~gakmYGA~WCpHC~~qK~lFgkeA~~---~l~yVEC~~dg~n~~~k~~~lC~~~~V~--GyPTw~i--n--Gk~y--- 256 (278)
..-+++|+++||++|+.+++.|.+-|.+ ++.++-.+.+. +.+++++++|+ ++||+.+ + |++|
T Consensus 13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~------~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~ 86 (103)
T cd02982 13 KPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADD------FGRHLEYFGLKEEDLPVIAIINLSDGKKYLMP 86 (103)
T ss_pred CCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHh------hHHHHHHcCCChhhCCEEEEEecccccccCCC
Confidence 4567889999999999999999985522 34544444332 35899999999 9999887 4 6644
Q ss_pred cCCCCHHHHHHHhC
Q 023700 257 SGEQDLSDLAKASG 270 (278)
Q Consensus 257 ~G~rsle~La~~sG 270 (278)
.|..+.++|.+|..
T Consensus 87 ~~~~~~~~l~~fi~ 100 (103)
T cd02982 87 EEELTAESLEEFVE 100 (103)
T ss_pred ccccCHHHHHHHHH
Confidence 33348899988753
No 103
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.35 E-value=1.2e-06 Score=64.89 Aligned_cols=71 Identities=11% Similarity=0.131 Sum_probs=51.8
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEECCEEecCCCCHHHHHHH
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKA 268 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inGk~y~G~rsle~La~~ 268 (278)
+++|+.+|||+|++.|.++.+. ...+.++|.+.+. +..+..++.|....|++++||+..-|.-+.++|.++
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~-~i~~~~~di~~~~-----~~~~~~~~~g~~~vP~v~~~g~~~~~G~~~~~~~~~ 71 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEH-GIAFEEINIDEQP-----EAIDYVKAQGFRQVPVIVADGDLSWSGFRPDKLKAL 71 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHC-CCceEEEECCCCH-----HHHHHHHHcCCcccCEEEECCCcEEeccCHHHHHhc
Confidence 4799999999999999999863 2234456666442 133445567889999999988755555677888765
No 104
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.34 E-value=3.3e-06 Score=72.51 Aligned_cols=82 Identities=15% Similarity=0.134 Sum_probs=51.1
Q ss_pred cccceEEEccCCCHHHHHHHHhhhhHhhh-cCc--EEEccCCCCC--CCc--ccHHhh-hhc---CCcccceeEE---CC
Q 023700 188 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK-QLN--YVECFPDGYR--KGT--KIAKAC-SDA---KIEGFPTWVI---NG 253 (278)
Q Consensus 188 ~~~gakmYGA~WCpHC~~qK~lFgkeA~~-~l~--yVEC~~dg~n--~~~--k~~~lC-~~~---~V~GyPTw~i---nG 253 (278)
.+..+++|+|.|||+|++..|.+.+-+.+ .+. .|+.+.+... +.. ...+.. ..+ +|+++||..+ +|
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G 129 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNT 129 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCCC
Confidence 44458999999999999999998874321 233 4554432100 000 011232 233 8999999776 54
Q ss_pred E----EecCCCCHHHHHHHh
Q 023700 254 Q----VLSGEQDLSDLAKAS 269 (278)
Q Consensus 254 k----~y~G~rsle~La~~s 269 (278)
+ ++.|..+.++|.+..
T Consensus 130 ~~i~~~~~G~~s~~~l~~~I 149 (153)
T TIGR02738 130 RKAYPVLQGAVDEAELANRM 149 (153)
T ss_pred CEEEEEeecccCHHHHHHHH
Confidence 4 468999999987653
No 105
>PTZ00062 glutaredoxin; Provisional
Probab=98.31 E-value=2.2e-06 Score=77.21 Aligned_cols=72 Identities=11% Similarity=0.009 Sum_probs=52.5
Q ss_pred HHHhhhc---ccceEEEccCCCHHHHHHHHhhhhHh--hhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE
Q 023700 182 SLAKHLH---AIGAKMYGAFWCSHCLEQKQMFGSEA--VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ 254 (278)
Q Consensus 182 aLAkhL~---~~gakmYGA~WCpHC~~qK~lFgkeA--~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk 254 (278)
++++.++ ..-+.+|.|+|||.|+.+++.+.+.+ +..+.++.++.| ++|.++||+++ ||+
T Consensus 8 e~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------------~~V~~vPtfv~~~~g~ 73 (204)
T PTZ00062 8 EKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------------DANNEYGVFEFYQNSQ 73 (204)
T ss_pred HHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------------cCcccceEEEEEECCE
Confidence 4444444 23467888999999999999998854 456778888642 89999999887 887
Q ss_pred ---EecCCCCHHHHHHH
Q 023700 255 ---VLSGEQDLSDLAKA 268 (278)
Q Consensus 255 ---~y~G~rsle~La~~ 268 (278)
++.|.. ..+|...
T Consensus 74 ~i~r~~G~~-~~~~~~~ 89 (204)
T PTZ00062 74 LINSLEGCN-TSTLVSF 89 (204)
T ss_pred EEeeeeCCC-HHHHHHH
Confidence 566654 5555543
No 106
>smart00594 UAS UAS domain.
Probab=98.30 E-value=3.6e-06 Score=68.61 Aligned_cols=98 Identities=18% Similarity=0.138 Sum_probs=69.8
Q ss_pred CcccccCCCCHHHHHHHhhhcccceEEEccCCCHHHHHHHH-hhhhHhhhc-C--cEE--EccCCCCCCCcccHHhhhhc
Q 023700 168 FETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGSEAVKQ-L--NYV--ECFPDGYRKGTKIAKACSDA 241 (278)
Q Consensus 168 ~~~~it~~S~~~~~aLAkhL~~~gakmYGA~WCpHC~~qK~-lFgkeA~~~-l--~yV--EC~~dg~n~~~k~~~lC~~~ 241 (278)
+++.....|=..+++.|+.-.+..++++.++||+.|+.+.. .|..++..+ + .|| .++.+. .. ..++++++
T Consensus 7 ~~~~f~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~-~e---g~~l~~~~ 82 (122)
T smart00594 7 YGPLFYQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDT-SE---GQRVSQFY 82 (122)
T ss_pred CCCceeeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCC-hh---HHHHHHhc
Confidence 34455566666777888877778899999999999999864 676643222 1 232 343322 11 36899999
Q ss_pred CCcccceeEE---CC-E-------EecCCCCHHHHHHHh
Q 023700 242 KIEGFPTWVI---NG-Q-------VLSGEQDLSDLAKAS 269 (278)
Q Consensus 242 ~V~GyPTw~i---nG-k-------~y~G~rsle~La~~s 269 (278)
++++|||+.+ +| + +++|..+.++|.+.+
T Consensus 83 ~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 83 KLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred CcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 9999999887 44 2 689999999998764
No 107
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.27 E-value=1.9e-06 Score=63.48 Aligned_cols=69 Identities=16% Similarity=0.176 Sum_probs=49.6
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEECCEEecCCCCHHHHHHHh
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKAS 269 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inGk~y~G~rsle~La~~s 269 (278)
+++|..+|||+|++.|.++.+. ...+..+|.+.+. . ...+=+..|...+|..++||+..-| .++|.+++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-~i~~~~~~v~~~~--~---~~~~~~~~g~~~vP~ifi~g~~igg---~~~l~~~l 71 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-GISYEEIPLGKDI--T---GRSLRAVTGAMTVPQVFIDGELIGG---SDDLEKYF 71 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-CCCcEEEECCCCh--h---HHHHHHHhCCCCcCeEEECCEEEeC---HHHHHHHh
Confidence 7899999999999999999873 2334566666442 1 1233333588999999999998766 56666653
No 108
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.25 E-value=1.4e-06 Score=70.12 Aligned_cols=76 Identities=20% Similarity=0.346 Sum_probs=49.1
Q ss_pred HHHHHhhhcccceEEEccCCCHHHHHHHHhhhhH--hhh----c--CcEEEccCCCCC----------------CCcccH
Q 023700 180 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSE--AVK----Q--LNYVECFPDGYR----------------KGTKIA 235 (278)
Q Consensus 180 ~~aLAkhL~~~gakmYGA~WCpHC~~qK~lFgke--A~~----~--l~yVEC~~dg~n----------------~~~k~~ 235 (278)
.+.|+..-.+..+++|+|.||++|+++.+.+.+. .++ . +-+|..+.+... ......
T Consensus 10 ~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T cd03009 10 KVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRS 89 (131)
T ss_pred CccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHH
Confidence 3455555566778899999999999998887652 121 2 335555433100 001124
Q ss_pred HhhhhcCCcccceeEE---CCEE
Q 023700 236 KACSDAKIEGFPTWVI---NGQV 255 (278)
Q Consensus 236 ~lC~~~~V~GyPTw~i---nGk~ 255 (278)
.++++++|+++||.++ ||+.
T Consensus 90 ~~~~~~~v~~~P~~~lid~~G~i 112 (131)
T cd03009 90 RLNRTFKIEGIPTLIILDADGEV 112 (131)
T ss_pred HHHHHcCCCCCCEEEEECCCCCE
Confidence 7889999999999776 6763
No 109
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.24 E-value=2.6e-06 Score=64.19 Aligned_cols=70 Identities=24% Similarity=0.360 Sum_probs=48.6
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhhcCc-EEEccCCCCCCCcccHHhhhhcCCcccceeEECCE-EecC-CCCHHHHHHH
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVKQLN-YVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ-VLSG-EQDLSDLAKA 268 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~~l~-yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inGk-~y~G-~rsle~La~~ 268 (278)
+++| .++||+|.++.+++.+.+ .+.+ .+|+.... + ..++ .++||.+.||++|||+ ++.| .-+.++|.++
T Consensus 3 I~v~-~~~C~~C~~~~~~~~~~~-~~~~i~~ei~~~~-~----~~~~-~~ygv~~vPalvIng~~~~~G~~p~~~el~~~ 74 (76)
T PF13192_consen 3 IKVF-SPGCPYCPELVQLLKEAA-EELGIEVEIIDIE-D----FEEI-EKYGVMSVPALVINGKVVFVGRVPSKEELKEL 74 (76)
T ss_dssp EEEE-CSSCTTHHHHHHHHHHHH-HHTTEEEEEEETT-T----HHHH-HHTT-SSSSEEEETTEEEEESS--HHHHHHHH
T ss_pred EEEe-CCCCCCcHHHHHHHHHHH-HhcCCeEEEEEcc-C----HHHH-HHcCCCCCCEEEECCEEEEEecCCCHHHHHHH
Confidence 4565 677999999999887743 2222 23443211 1 3565 9999999999999999 6999 8999999887
Q ss_pred h
Q 023700 269 S 269 (278)
Q Consensus 269 s 269 (278)
.
T Consensus 75 l 75 (76)
T PF13192_consen 75 L 75 (76)
T ss_dssp H
T ss_pred h
Confidence 4
No 110
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.23 E-value=2.2e-06 Score=67.97 Aligned_cols=81 Identities=11% Similarity=0.177 Sum_probs=57.7
Q ss_pred HHHhhhcccceEEEc-----cCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEECCEEe
Q 023700 182 SLAKHLHAIGAKMYG-----AFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVL 256 (278)
Q Consensus 182 aLAkhL~~~gakmYG-----A~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inGk~y 256 (278)
.+.+.+.+..+++|. ++|||+|++.|.+|.+. ...+.++|...+ . .-+.++.+..|-+.+|..+|||+.+
T Consensus 4 ~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-~i~~~~~di~~~---~-~~~~~l~~~tg~~tvP~vfi~g~~i 78 (97)
T TIGR00365 4 RIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKAC-GVPFAYVNVLED---P-EIRQGIKEYSNWPTIPQLYVKGEFV 78 (97)
T ss_pred HHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHc-CCCEEEEECCCC---H-HHHHHHHHHhCCCCCCEEEECCEEE
Confidence 455567777888884 39999999999999874 223334555432 1 1144566667888999999999988
Q ss_pred cCCCCHHHHHH
Q 023700 257 SGEQDLSDLAK 267 (278)
Q Consensus 257 ~G~rsle~La~ 267 (278)
-|-.++.+|.+
T Consensus 79 GG~ddl~~l~~ 89 (97)
T TIGR00365 79 GGCDIIMEMYQ 89 (97)
T ss_pred eChHHHHHHHH
Confidence 88888777754
No 111
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.23 E-value=5.4e-06 Score=66.12 Aligned_cols=88 Identities=19% Similarity=0.166 Sum_probs=64.6
Q ss_pred HHHHHHHhhhcccceEEEccCCCHHHHHHHH-hhhhHhhhc-----CcEEEccCCCCCCCcccHHhhhhcCCcccceeEE
Q 023700 178 PFALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGSEAVKQ-----LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI 251 (278)
Q Consensus 178 ~~~~aLAkhL~~~gakmYGA~WCpHC~~qK~-lFgkeA~~~-----l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i 251 (278)
..+++.|++-.+.-++++.++||+.|+.++. .|..+...+ .-.+..+.+. ....++++.++++++||+.+
T Consensus 7 ~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~----~e~~~~~~~~~~~~~P~~~~ 82 (114)
T cd02958 7 EDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDS----SEGQRFLQSYKVDKYPHIAI 82 (114)
T ss_pred HHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCC----ccHHHHHHHhCccCCCeEEE
Confidence 4677888888888899999999999999964 776644322 2233343321 12468899999999999876
Q ss_pred ----CCE---EecCCCCHHHHHHHh
Q 023700 252 ----NGQ---VLSGEQDLSDLAKAS 269 (278)
Q Consensus 252 ----nGk---~y~G~rsle~La~~s 269 (278)
+|+ ++.|..+.+++.+..
T Consensus 83 i~~~~g~~l~~~~G~~~~~~f~~~L 107 (114)
T cd02958 83 IDPRTGEVLKVWSGNITPEDLLSQL 107 (114)
T ss_pred EeCccCcEeEEEcCCCCHHHHHHHH
Confidence 465 679999999988654
No 112
>PRK10638 glutaredoxin 3; Provisional
Probab=98.23 E-value=2.3e-06 Score=64.96 Aligned_cols=72 Identities=19% Similarity=0.287 Sum_probs=53.2
Q ss_pred ceEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEECCEEecCCCCHHHHHH
Q 023700 191 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAK 267 (278)
Q Consensus 191 gakmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inGk~y~G~rsle~La~ 267 (278)
.+++|+.+|||+|++.+.++.+. ...+..+|++.+. ....++-+..+...+|++++||+..-|-.++.+|.+
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~-gi~y~~~dv~~~~----~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSK-GVSFQEIPIDGDA----AKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDA 74 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHc-CCCcEEEECCCCH----HHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHH
Confidence 47899999999999999999874 2334557775432 113455666788899999999998888766665543
No 113
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.19 E-value=3.3e-06 Score=63.17 Aligned_cols=74 Identities=18% Similarity=0.220 Sum_probs=47.5
Q ss_pred HHHHhhhcccceEEEccCCCHHHHHHHHhhhhHh--h--hcCc--EEEccCC-CCC---------C-----CcccHHhhh
Q 023700 181 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--V--KQLN--YVECFPD-GYR---------K-----GTKIAKACS 239 (278)
Q Consensus 181 ~aLAkhL~~~gakmYGA~WCpHC~~qK~lFgkeA--~--~~l~--yVEC~~d-g~n---------~-----~~k~~~lC~ 239 (278)
+.+++...+..+++|++.||++|+++.+.+.+.. + ..+. .|+++++ ... . -.+..++.+
T Consensus 12 ~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (116)
T cd02966 12 VSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAK 91 (116)
T ss_pred eehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHH
Confidence 4444443566788999999999999988777632 2 2233 5566542 000 0 000147899
Q ss_pred hcCCcccceeEE---CCE
Q 023700 240 DAKIEGFPTWVI---NGQ 254 (278)
Q Consensus 240 ~~~V~GyPTw~i---nGk 254 (278)
++++.++|++++ +|+
T Consensus 92 ~~~~~~~P~~~l~d~~g~ 109 (116)
T cd02966 92 AYGVRGLPTTFLIDRDGR 109 (116)
T ss_pred hcCcCccceEEEECCCCc
Confidence 999999999876 575
No 114
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=6.1e-06 Score=63.53 Aligned_cols=75 Identities=19% Similarity=0.312 Sum_probs=54.0
Q ss_pred ceEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhc-CCcccceeEECCEEecCCCCHHHHHHHh
Q 023700 191 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDA-KIEGFPTWVINGQVLSGEQDLSDLAKAS 269 (278)
Q Consensus 191 gakmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~-~V~GyPTw~inGk~y~G~rsle~La~~s 269 (278)
.+.+|.-+|||+|++.|.++.+. .++|.+++.+... .+...+.-++. |.+..|..+|||+..-|..++++|.+..
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~---g~~~~~i~~~~~~-~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~~~ 77 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRK---GVDYEEIDVDDDE-PEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAKG 77 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHc---CCCcEEEEecCCc-HHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHhhc
Confidence 36899999999999999999863 4555444433211 11233445555 7899999999999888888999987643
No 115
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.18 E-value=2.8e-06 Score=69.12 Aligned_cols=77 Identities=18% Similarity=0.242 Sum_probs=49.6
Q ss_pred HHHHHHhhhcccceEEEccCCCHHHHHHHHhhhhH--hhh----c--CcEEEccCCCC--------C--------CC-cc
Q 023700 179 FALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSE--AVK----Q--LNYVECFPDGY--------R--------KG-TK 233 (278)
Q Consensus 179 ~~~aLAkhL~~~gakmYGA~WCpHC~~qK~lFgke--A~~----~--l~yVEC~~dg~--------n--------~~-~k 233 (278)
..+.|+..-.+.-+++|+|.||++|+++.+.+.+. .++ . +-+|..+.+.. . .+ ..
T Consensus 8 ~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~ 87 (132)
T cd02964 8 GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEEL 87 (132)
T ss_pred ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHH
Confidence 45566666567778899999999999998887652 121 2 33566654310 0 00 11
Q ss_pred cHHhhhhcCCcccceeEE---CCEE
Q 023700 234 IAKACSDAKIEGFPTWVI---NGQV 255 (278)
Q Consensus 234 ~~~lC~~~~V~GyPTw~i---nGk~ 255 (278)
...+.+.++|.++||.++ ||+.
T Consensus 88 ~~~~~~~~~v~~iPt~~lid~~G~i 112 (132)
T cd02964 88 RELLEKQFKVEGIPTLVVLKPDGDV 112 (132)
T ss_pred HHHHHHHcCCCCCCEEEEECCCCCE
Confidence 235677799999999876 5653
No 116
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.18 E-value=6.5e-06 Score=63.43 Aligned_cols=71 Identities=13% Similarity=0.149 Sum_probs=51.3
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEECCEEecCCCCHHHHHHHh
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKAS 269 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inGk~y~G~rsle~La~~s 269 (278)
+++|..+|||+|++.|.+|.+. ...+..||.+.+. +..+..++.+.+..|+.+++++...|- +.++|.++.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~-gI~~~~idi~~~~-----~~~~~~~~~g~~~vPvv~i~~~~~~Gf-~~~~l~~~~ 73 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR-GFDFEMINVDRVP-----EAAETLRAQGFRQLPVVIAGDLSWSGF-RPDMINRLH 73 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC-CCceEEEECCCCH-----HHHHHHHHcCCCCcCEEEECCEEEecC-CHHHHHHHH
Confidence 7899999999999999999763 2233456665432 123445667888999999999877765 457777764
No 117
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.15 E-value=3.2e-06 Score=65.75 Aligned_cols=78 Identities=12% Similarity=0.175 Sum_probs=57.5
Q ss_pred hhhcccceEEEcc-----CCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEECCEEecCC
Q 023700 185 KHLHAIGAKMYGA-----FWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGE 259 (278)
Q Consensus 185 khL~~~gakmYGA-----~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inGk~y~G~ 259 (278)
+.+++..+++|.- +|||+|++.|.+|.+. ...+..+|...+. .-+.++.+..|-+.+|..+|||+.+-|-
T Consensus 3 ~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-~i~y~~idv~~~~----~~~~~l~~~~g~~tvP~vfi~g~~iGG~ 77 (90)
T cd03028 3 KLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQL-GVDFGTFDILEDE----EVRQGLKEYSNWPTFPQLYVNGELVGGC 77 (90)
T ss_pred hhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-CCCeEEEEcCCCH----HHHHHHHHHhCCCCCCEEEECCEEEeCH
Confidence 3456667888843 7999999999999874 2345567765442 1145566667888999999999999888
Q ss_pred CCHHHHHH
Q 023700 260 QDLSDLAK 267 (278)
Q Consensus 260 rsle~La~ 267 (278)
.++.+|.+
T Consensus 78 ~~l~~l~~ 85 (90)
T cd03028 78 DIVKEMHE 85 (90)
T ss_pred HHHHHHHH
Confidence 88887764
No 118
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.12 E-value=5.4e-06 Score=62.72 Aligned_cols=67 Identities=24% Similarity=0.326 Sum_probs=43.4
Q ss_pred HHHHHHHhhhcccceEEEccCCCHHHHHHHHhh-hhHh-----hhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE
Q 023700 178 PFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMF-GSEA-----VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI 251 (278)
Q Consensus 178 ~~~~aLAkhL~~~gakmYGA~WCpHC~~qK~lF-gkeA-----~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i 251 (278)
+.+++.|+.-++.-+++|+|.||++|+.++..+ .... .+++-.|..+-+. + .... +...+|+||+++
T Consensus 7 ~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~--~---~~~~--~~~~~~~P~~~~ 79 (82)
T PF13899_consen 7 EEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDD--E---DPNA--QFDRQGYPTFFF 79 (82)
T ss_dssp HHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTT--H---HHHH--HHHHCSSSEEEE
T ss_pred HHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCC--C---ChhH--HhCCccCCEEEE
Confidence 356777777788889999999999999998755 4322 2334455554332 1 1222 222288999876
No 119
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=4.5e-06 Score=78.14 Aligned_cols=76 Identities=20% Similarity=0.360 Sum_probs=54.0
Q ss_pred HHHHHHHhhhcccceEEEccCCCHHHHHHHHhhhhHhhhcC--cEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CC
Q 023700 178 PFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG 253 (278)
Q Consensus 178 ~~~~aLAkhL~~~gakmYGA~WCpHC~~qK~lFgkeA~~~l--~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nG 253 (278)
.+..+|++.=.+..++-|+|.||+-|++..|+|...+.++. -|.+++.|. .++.+..+||...||++. ||
T Consensus 11 df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~------c~~taa~~gV~amPTFiff~ng 84 (288)
T KOG0908|consen 11 DFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDE------CRGTAATNGVNAMPTFIFFRNG 84 (288)
T ss_pred HHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHH------hhchhhhcCcccCceEEEEecC
Confidence 35556666655556778889999999999999999765542 243443332 345566799999999987 99
Q ss_pred EE---ecCC
Q 023700 254 QV---LSGE 259 (278)
Q Consensus 254 k~---y~G~ 259 (278)
++ +.|.
T Consensus 85 ~kid~~qGA 93 (288)
T KOG0908|consen 85 VKIDQIQGA 93 (288)
T ss_pred eEeeeecCC
Confidence 74 5554
No 120
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.06 E-value=7.9e-06 Score=53.29 Aligned_cols=57 Identities=19% Similarity=0.363 Sum_probs=37.8
Q ss_pred eEEEccCCCHHHHHHHHhhhhH--hhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSE--AVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI 251 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgke--A~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i 251 (278)
+++|++.||+||+++++.+.+. ...++.++.++.++..+ ..+...++++..+|++++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~P~~~~ 59 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPA---LEKELKRYGVGGVPTLVV 59 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChH---HhhHHHhCCCccccEEEE
Confidence 3678899999999999988863 12345554444333221 112224789999999988
No 121
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.96 E-value=2.8e-05 Score=78.11 Aligned_cols=86 Identities=15% Similarity=0.232 Sum_probs=66.1
Q ss_pred CHHHHHHHhhhc-ccceEEEccCCCHHHHHHHHhhhhHhhh--cCc--EEEccCCCCCCCcccHHhhhhcCCcccceeEE
Q 023700 177 SPFALSLAKHLH-AIGAKMYGAFWCSHCLEQKQMFGSEAVK--QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI 251 (278)
Q Consensus 177 ~~~~~aLAkhL~-~~gakmYGA~WCpHC~~qK~lFgkeA~~--~l~--yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i 251 (278)
++..++..+.|. ...+++|..+|||+|.+....+.+-|.. ++. .||.+. ++++.++++|.+.|+.+|
T Consensus 464 ~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~--------~~~~~~~~~v~~vP~~~i 535 (555)
T TIGR03143 464 GEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSH--------FPDLKDEYGIMSVPAIVV 535 (555)
T ss_pred CHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcc--------cHHHHHhCCceecCEEEE
Confidence 334445555564 4568999999999999998888774433 243 455442 579999999999999999
Q ss_pred CCE-EecCCCCHHHHHHHhC
Q 023700 252 NGQ-VLSGEQDLSDLAKASG 270 (278)
Q Consensus 252 nGk-~y~G~rsle~La~~sG 270 (278)
||+ .+.|..+.+++.++.|
T Consensus 536 ~~~~~~~G~~~~~~~~~~~~ 555 (555)
T TIGR03143 536 DDQQVYFGKKTIEEMLELIG 555 (555)
T ss_pred CCEEEEeeCCCHHHHHHhhC
Confidence 997 6899999999999876
No 122
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.96 E-value=4.1e-05 Score=61.58 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=30.8
Q ss_pred HHhhhhcCCcccceeEECCEEecCCCCHHHHHHHh
Q 023700 235 AKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKAS 269 (278)
Q Consensus 235 ~~lC~~~~V~GyPTw~inGk~y~G~rsle~La~~s 269 (278)
.+++++.||.|.||+++||+.+.|..++++|.+..
T Consensus 119 ~~~~~~~gi~gtPt~~v~g~~~~G~~~~~~l~~~i 153 (154)
T cd03023 119 RQLARALGITGTPAFIIGDTVIPGAVPADTLKEAI 153 (154)
T ss_pred HHHHHHcCCCcCCeEEECCEEecCCCCHHHHHHHh
Confidence 35567889999999999999999999999998764
No 123
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=97.95 E-value=5.7e-06 Score=64.51 Aligned_cols=66 Identities=17% Similarity=0.160 Sum_probs=40.3
Q ss_pred HHHHhhh-cccceEEEccCCCHHHHHHHHhhhhHh--h-hcCcEEEccCCCCCCCcccHHhhhhcCCccccee
Q 023700 181 LSLAKHL-HAIGAKMYGAFWCSHCLEQKQMFGSEA--V-KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTW 249 (278)
Q Consensus 181 ~aLAkhL-~~~gakmYGA~WCpHC~~qK~lFgkeA--~-~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw 249 (278)
+.|+.+. .+.-+++|+|+|||+|+++.+.+.+.+ + .++..|... ++.. .+..+..+++++.+||+.
T Consensus 13 ~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~-~~~~--~~~~~~~~~~~~~~~p~~ 82 (114)
T cd02967 13 VRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLAS-DGEK--AEHQRFLKKHGLEAFPYV 82 (114)
T ss_pred EEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEe-CCCH--HHHHHHHHHhCCCCCcEE
Confidence 4445544 456678889999999999998886632 2 234444332 2111 124456777777777764
No 124
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.91 E-value=6.1e-05 Score=65.75 Aligned_cols=82 Identities=15% Similarity=0.090 Sum_probs=48.8
Q ss_pred ccceEEEccCCCHHHHHHHHhhhhHhh-hcCc--EEEccCC----------CCC--CCcccHHhhhhcCCcccceeEE--
Q 023700 189 AIGAKMYGAFWCSHCLEQKQMFGSEAV-KQLN--YVECFPD----------GYR--KGTKIAKACSDAKIEGFPTWVI-- 251 (278)
Q Consensus 189 ~~gakmYGA~WCpHC~~qK~lFgkeA~-~~l~--yVEC~~d----------g~n--~~~k~~~lC~~~~V~GyPTw~i-- 251 (278)
+.-+++|+|.|||.|+++.|.+.+... ..++ .|..+.. +.+ .-....++.++++|.+.|+.++
T Consensus 75 k~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~lID 154 (189)
T TIGR02661 75 RPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGVLLD 154 (189)
T ss_pred CEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEEEEC
Confidence 456778899999999999887766321 1222 3331100 000 0001247788899999998655
Q ss_pred -CCE-EecCC-CCHHHHHHHhC
Q 023700 252 -NGQ-VLSGE-QDLSDLAKASG 270 (278)
Q Consensus 252 -nGk-~y~G~-rsle~La~~sG 270 (278)
+|+ ++.|. .+.+++.++..
T Consensus 155 ~~G~I~~~g~~~~~~~le~ll~ 176 (189)
T TIGR02661 155 QDGKIRAKGLTNTREHLESLLE 176 (189)
T ss_pred CCCeEEEccCCCCHHHHHHHHH
Confidence 677 45664 45556665543
No 125
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.91 E-value=4.7e-05 Score=67.69 Aligned_cols=77 Identities=14% Similarity=0.115 Sum_probs=49.5
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhh-cCcEEEccCCCCC-------CCcccHHhhhhcCC--cccceeEE---CCE----
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVK-QLNYVECFPDGYR-------KGTKIAKACSDAKI--EGFPTWVI---NGQ---- 254 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~-~l~yVEC~~dg~n-------~~~k~~~lC~~~~V--~GyPTw~i---nGk---- 254 (278)
+++|+|.|||+|++..|.+.+-+.+ .+..+-..-|+.. -+.+...+.+.+++ .++||-++ ||+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~~ 152 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEALP 152 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEEE
Confidence 7789999999999999887763221 2433323223221 00012345667885 79999665 775
Q ss_pred EecCCCCHHHHHHH
Q 023700 255 VLSGEQDLSDLAKA 268 (278)
Q Consensus 255 ~y~G~rsle~La~~ 268 (278)
.+.|..+.++|.+.
T Consensus 153 ~~~G~~~~~~L~~~ 166 (181)
T PRK13728 153 LLQGATDAAGFMAR 166 (181)
T ss_pred EEECCCCHHHHHHH
Confidence 37899998888653
No 126
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.83 E-value=2e-05 Score=68.58 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=32.7
Q ss_pred cHHhhhhcCCcccceeEE-CCEEecCCCCHHHHHHHh
Q 023700 234 IAKACSDAKIEGFPTWVI-NGQVLSGEQDLSDLAKAS 269 (278)
Q Consensus 234 ~~~lC~~~~V~GyPTw~i-nGk~y~G~rsle~La~~s 269 (278)
..+++++.||+|.||+++ ||+.+.|..+.++|.++.
T Consensus 161 ~~~l~~~~gi~gtPtii~~~G~~~~G~~~~~~l~~~L 197 (197)
T cd03020 161 NLALGRQLGVNGTPTIVLADGRVVPGAPPAAQLEALL 197 (197)
T ss_pred HHHHHHHcCCCcccEEEECCCeEecCCCCHHHHHhhC
Confidence 568999999999999999 799999999999998763
No 127
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.83 E-value=5.8e-05 Score=63.92 Aligned_cols=69 Identities=12% Similarity=0.091 Sum_probs=44.2
Q ss_pred CCHHHHHHHhhhcccceEEEccCCCHHHHHHHH-hhhhHhhhc-C--cEE--EccCCCCCCCcccHHhhhhcCCccccee
Q 023700 176 SSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGSEAVKQ-L--NYV--ECFPDGYRKGTKIAKACSDAKIEGFPTW 249 (278)
Q Consensus 176 S~~~~~aLAkhL~~~gakmYGA~WCpHC~~qK~-lFgkeA~~~-l--~yV--EC~~dg~n~~~k~~~lC~~~~V~GyPTw 249 (278)
+=+.+++.|+.-.+.-+++|++.||++|++++. .|.+...++ + .|| ..+.|..+++ .. ..+ .++||+
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~---~~---~~g-~~vPti 83 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKN---LS---PDG-QYVPRI 83 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCC---cC---ccC-cccCeE
Confidence 345677888888888899999999999999987 565543222 2 233 4443322111 11 133 799998
Q ss_pred EE
Q 023700 250 VI 251 (278)
Q Consensus 250 ~i 251 (278)
++
T Consensus 84 vF 85 (130)
T cd02960 84 MF 85 (130)
T ss_pred EE
Confidence 87
No 128
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=97.80 E-value=2.7e-05 Score=59.06 Aligned_cols=66 Identities=20% Similarity=0.336 Sum_probs=39.3
Q ss_pred ccceEEEccCCCHHHHHHHHhhhhH--hhh---cCc--EEEccCCC--------CC---------CCcccHHhhhhcCCc
Q 023700 189 AIGAKMYGAFWCSHCLEQKQMFGSE--AVK---QLN--YVECFPDG--------YR---------KGTKIAKACSDAKIE 244 (278)
Q Consensus 189 ~~gakmYGA~WCpHC~~qK~lFgke--A~~---~l~--yVEC~~dg--------~n---------~~~k~~~lC~~~~V~ 244 (278)
+.-+++|+|.||++|++..+.+.+. .++ ++. +|.++.+. ++ ......++-+.++|+
T Consensus 2 K~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~ 81 (95)
T PF13905_consen 2 KPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGIN 81 (95)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-T
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCC
Confidence 3457899999999999998776552 233 332 44444320 00 001245678888999
Q ss_pred ccceeEE---CCE
Q 023700 245 GFPTWVI---NGQ 254 (278)
Q Consensus 245 GyPTw~i---nGk 254 (278)
++||+++ ||+
T Consensus 82 ~iP~~~lld~~G~ 94 (95)
T PF13905_consen 82 GIPTLVLLDPDGK 94 (95)
T ss_dssp SSSEEEEEETTSB
T ss_pred cCCEEEEECCCCC
Confidence 9999887 664
No 129
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.76 E-value=0.00025 Score=77.00 Aligned_cols=82 Identities=18% Similarity=0.285 Sum_probs=54.9
Q ss_pred cccceEEEccCCCHHHHHHHHhhhhHh--hh--cCcEEEccC---CCCCC------------------CcccHHhhhhcC
Q 023700 188 HAIGAKMYGAFWCSHCLEQKQMFGSEA--VK--QLNYVECFP---DGYRK------------------GTKIAKACSDAK 242 (278)
Q Consensus 188 ~~~gakmYGA~WCpHC~~qK~lFgkeA--~~--~l~yVEC~~---dg~n~------------------~~k~~~lC~~~~ 242 (278)
.+..++.|+|.|||+|++..|.+.+.+ ++ .+..|.+.. |.... .....++.++++
T Consensus 420 GK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~~ 499 (1057)
T PLN02919 420 GKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRELG 499 (1057)
T ss_pred CCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhcC
Confidence 466788999999999999999887632 22 244454421 11000 001235678899
Q ss_pred CcccceeEE---CCE---EecCCCCHHHHHHHh
Q 023700 243 IEGFPTWVI---NGQ---VLSGEQDLSDLAKAS 269 (278)
Q Consensus 243 V~GyPTw~i---nGk---~y~G~rsle~La~~s 269 (278)
|+++||.++ ||+ ++.|....++|.++.
T Consensus 500 V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l 532 (1057)
T PLN02919 500 VSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLV 532 (1057)
T ss_pred CCccceEEEECCCCeEEEEEecccCHHHHHHHH
Confidence 999999876 687 688998877766554
No 130
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.67 E-value=0.00051 Score=70.36 Aligned_cols=88 Identities=18% Similarity=0.318 Sum_probs=63.8
Q ss_pred HHHHHHHhhhcccceEEEccCCCHHHHHHHH-hhhhH----hhhcCc--EEEccCCCCCCCcccHHhhhhcCCcccceeE
Q 023700 178 PFALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGSE----AVKQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWV 250 (278)
Q Consensus 178 ~~~~aLAkhL~~~gakmYGA~WCpHC~~qK~-lFgke----A~~~l~--yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~ 250 (278)
.-..++|+|=++..++-|+|.||=.||+.|+ .|.+. +.+++- .+|.+++ +.++.++=+++|+-|-||.+
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~----~p~~~~lLk~~~~~G~P~~~ 539 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTAN----DPAITALLKRLGVFGVPTYL 539 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCC----CHHHHHHHHHcCCCCCCEEE
Confidence 4556677776667788888999999999987 57542 122222 5666654 23478899999999999988
Q ss_pred E---CCE---EecCCCCHHHHHHHh
Q 023700 251 I---NGQ---VLSGEQDLSDLAKAS 269 (278)
Q Consensus 251 i---nGk---~y~G~rsle~La~~s 269 (278)
+ +|+ .+.|..+.+.+.++.
T Consensus 540 ff~~~g~e~~~l~gf~~a~~~~~~l 564 (569)
T COG4232 540 FFGPQGSEPEILTGFLTADAFLEHL 564 (569)
T ss_pred EECCCCCcCcCCcceecHHHHHHHH
Confidence 7 454 478888888877764
No 131
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.62 E-value=0.00018 Score=71.51 Aligned_cols=88 Identities=17% Similarity=0.245 Sum_probs=68.1
Q ss_pred CHHHHHHHhhhc-ccceEEEccCCCHHHHHHHHhhhhHhhh--cC--cEEEccCCCCCCCcccHHhhhhcCCcccceeEE
Q 023700 177 SPFALSLAKHLH-AIGAKMYGAFWCSHCLEQKQMFGSEAVK--QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI 251 (278)
Q Consensus 177 ~~~~~aLAkhL~-~~gakmYGA~WCpHC~~qK~lFgkeA~~--~l--~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i 251 (278)
++...+..+.|. .+.+++|..+.||||.+..+.+.+.|.. ++ ..||... ++++.++++|.+.|+.++
T Consensus 104 ~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~--------~~~~~~~~~v~~VP~~~i 175 (517)
T PRK15317 104 DQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGAL--------FQDEVEARNIMAVPTVFL 175 (517)
T ss_pred CHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchh--------CHhHHHhcCCcccCEEEE
Confidence 344556666664 5679999999999999999998875532 23 2344332 579999999999999999
Q ss_pred CCE-EecCCCCHHHHHHHhCCC
Q 023700 252 NGQ-VLSGEQDLSDLAKASGFP 272 (278)
Q Consensus 252 nGk-~y~G~rsle~La~~sG~~ 272 (278)
||+ .+.|..+.++|.+....+
T Consensus 176 ~~~~~~~g~~~~~~~~~~~~~~ 197 (517)
T PRK15317 176 NGEEFGQGRMTLEEILAKLDTG 197 (517)
T ss_pred CCcEEEecCCCHHHHHHHHhcc
Confidence 886 689999999999887654
No 132
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.53 E-value=0.00016 Score=70.81 Aligned_cols=68 Identities=19% Similarity=0.301 Sum_probs=48.3
Q ss_pred ceEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHh---hh------hcCCcccceeEECCEEecCCCC
Q 023700 191 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKA---CS------DAKIEGFPTWVINGQVLSGEQD 261 (278)
Q Consensus 191 gakmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~l---C~------~~~V~GyPTw~inGk~y~G~rs 261 (278)
.+++|..+|||||++.|.++.+. ......||.+.+. . ..++ .. ..|.+..|+.+|||+.+.|-.+
T Consensus 3 ~V~vys~~~Cp~C~~aK~~L~~~-gi~~~~idi~~~~--~---~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~ 76 (410)
T PRK12759 3 EVRIYTKTNCPFCDLAKSWFGAN-DIPFTQISLDDDV--K---RAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDN 76 (410)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHC-CCCeEEEECCCCh--h---HHHHHHHHhhccccccCCCCccCeEEECCEEEeCchH
Confidence 37899999999999999999984 2234467776432 1 1121 11 1378899999999998888766
Q ss_pred HHH
Q 023700 262 LSD 264 (278)
Q Consensus 262 le~ 264 (278)
+.+
T Consensus 77 l~~ 79 (410)
T PRK12759 77 LMA 79 (410)
T ss_pred HHH
Confidence 654
No 133
>PRK10824 glutaredoxin-4; Provisional
Probab=97.51 E-value=0.00026 Score=58.72 Aligned_cols=80 Identities=14% Similarity=0.219 Sum_probs=55.5
Q ss_pred HHHhhhcccceEEEcc-----CCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEECCEEe
Q 023700 182 SLAKHLHAIGAKMYGA-----FWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVL 256 (278)
Q Consensus 182 aLAkhL~~~gakmYGA-----~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inGk~y 256 (278)
.+.+.+++..+++|.. ||||+|++.|.+|.+. ...+.++|.+.+.. -+..+-+.-|-+-+|-.+|||+.+
T Consensus 7 ~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~-~i~~~~idi~~d~~----~~~~l~~~sg~~TVPQIFI~G~~I 81 (115)
T PRK10824 7 KIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSAC-GERFAYVDILQNPD----IRAELPKYANWPTFPQLWVDGELV 81 (115)
T ss_pred HHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHc-CCCceEEEecCCHH----HHHHHHHHhCCCCCCeEEECCEEE
Confidence 4555677777888865 6999999999999874 33455777764421 123344445677788899999988
Q ss_pred cCCCCHHHHH
Q 023700 257 SGEQDLSDLA 266 (278)
Q Consensus 257 ~G~rsle~La 266 (278)
-|-.++.+|.
T Consensus 82 GG~ddl~~l~ 91 (115)
T PRK10824 82 GGCDIVIEMY 91 (115)
T ss_pred cChHHHHHHH
Confidence 7776666654
No 134
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.51 E-value=0.00029 Score=51.06 Aligned_cols=74 Identities=20% Similarity=0.329 Sum_probs=48.1
Q ss_pred eEEEccCCCHHHHHHHHhhhhHh--hh-cCcEEEccCCCCCCCcccHHhhhhcC--CcccceeEE--CCE---EecC--C
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEA--VK-QLNYVECFPDGYRKGTKIAKACSDAK--IEGFPTWVI--NGQ---VLSG--E 259 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA--~~-~l~yVEC~~dg~n~~~k~~~lC~~~~--V~GyPTw~i--nGk---~y~G--~ 259 (278)
++.|+++|||+|+..++.+.+.+ +. .+.++.++.... ..++...++ +..+|++.+ |++ .+.+ .
T Consensus 36 ~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 110 (127)
T COG0526 36 LVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDE-----NPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKV 110 (127)
T ss_pred EEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCC-----ChHHHHHHhhhhccCCeEEEEeCcchhhhhhhccc
Confidence 44446999999999999988743 22 355666654211 347788888 999999885 664 3444 4
Q ss_pred CCHHHHHHHhC
Q 023700 260 QDLSDLAKASG 270 (278)
Q Consensus 260 rsle~La~~sG 270 (278)
...+.+....+
T Consensus 111 ~~~~~~~~~~~ 121 (127)
T COG0526 111 LPKEALIDALG 121 (127)
T ss_pred CCHHHHHHHhc
Confidence 55555554433
No 135
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=97.51 E-value=0.00023 Score=57.30 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=24.5
Q ss_pred HHHHhhhcccceEEEccCCCHHHHHHHHhhhh
Q 023700 181 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS 212 (278)
Q Consensus 181 ~aLAkhL~~~gakmYGA~WCpHC~~qK~lFgk 212 (278)
+.|+.+-.+..+++|+|.|||.|+++.+.+.+
T Consensus 16 v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~ 47 (126)
T cd03012 16 LSLAQLRGKVVLLDFWTYCCINCLHTLPYLTD 47 (126)
T ss_pred cCHHHhCCCEEEEEEECCCCccHHHHHHHHHH
Confidence 45555544567788889999999999887765
No 136
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=97.46 E-value=0.00029 Score=57.41 Aligned_cols=90 Identities=19% Similarity=0.223 Sum_probs=54.4
Q ss_pred HHHHHHHhhhcccceEEEccC-CCHHHHHHHHhhhhHh--h--hcCcEEEccCCCCCCC---------------cccHHh
Q 023700 178 PFALSLAKHLHAIGAKMYGAF-WCSHCLEQKQMFGSEA--V--KQLNYVECFPDGYRKG---------------TKIAKA 237 (278)
Q Consensus 178 ~~~~aLAkhL~~~gakmYGA~-WCpHC~~qK~lFgkeA--~--~~l~yVEC~~dg~n~~---------------~k~~~l 237 (278)
...+.|++.-.+..+++|+|. |||+|+++.+.+.+.+ + +.+.+|-+..+....- ....++
T Consensus 18 g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 97 (146)
T PF08534_consen 18 GKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGAL 97 (146)
T ss_dssp SEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHH
T ss_pred CCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHH
Confidence 344556663345557788899 9999999998776631 1 2244444432211000 012367
Q ss_pred hhhcCCc---------ccceeEE---CCE---EecCCCC--HHHHHH
Q 023700 238 CSDAKIE---------GFPTWVI---NGQ---VLSGEQD--LSDLAK 267 (278)
Q Consensus 238 C~~~~V~---------GyPTw~i---nGk---~y~G~rs--le~La~ 267 (278)
.+++++. ++|++++ ||+ +..|..+ ..++.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~~~~~~~~~ 144 (146)
T PF08534_consen 98 AKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDPDEESDLEA 144 (146)
T ss_dssp HHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBTTSHHSHHH
T ss_pred HHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCCCCCCChhh
Confidence 8889988 9999876 787 4566655 344443
No 137
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00048 Score=56.32 Aligned_cols=82 Identities=17% Similarity=0.184 Sum_probs=59.8
Q ss_pred HHhhhcccceEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEECCEEecCCCCH
Q 023700 183 LAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDL 262 (278)
Q Consensus 183 LAkhL~~~gakmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inGk~y~G~rsl 262 (278)
.-+-+.+..+++|.-.|||.|++.|.+|.+. ......||-|.+.... .-+..+-+--+-+..|..+|||+-+-|..++
T Consensus 7 v~~~i~~~~VVifSKs~C~~c~~~k~ll~~~-~v~~~vvELD~~~~g~-eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl 84 (104)
T KOG1752|consen 7 VRKMISENPVVIFSKSSCPYCHRAKELLSDL-GVNPKVVELDEDEDGS-EIQKALKKLTGQRTVPNVFIGGKFIGGASDL 84 (104)
T ss_pred HHHHhhcCCEEEEECCcCchHHHHHHHHHhC-CCCCEEEEccCCCCcH-HHHHHHHHhcCCCCCCEEEECCEEEcCHHHH
Confidence 3344666779999999999999999999883 2234578887664332 2244455546677999999999988887777
Q ss_pred HHHH
Q 023700 263 SDLA 266 (278)
Q Consensus 263 e~La 266 (278)
.+|.
T Consensus 85 ~~lh 88 (104)
T KOG1752|consen 85 MALH 88 (104)
T ss_pred HHHH
Confidence 7665
No 138
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=97.44 E-value=0.00025 Score=60.79 Aligned_cols=74 Identities=19% Similarity=0.192 Sum_probs=45.6
Q ss_pred HHHhhhcccceEEEccCCCHHHHHHHHhhhhH------hh-----hcCcEEEccCCCCCC-------------------C
Q 023700 182 SLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSE------AV-----KQLNYVECFPDGYRK-------------------G 231 (278)
Q Consensus 182 aLAkhL~~~gakmYGA~WCpHC~~qK~lFgke------A~-----~~l~yVEC~~dg~n~-------------------~ 231 (278)
.|+..=.+..++.|+|.|||-|++..|.+.+- .+ +++..|-...|.... .
T Consensus 19 ~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~ 98 (146)
T cd03008 19 IVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFED 98 (146)
T ss_pred cHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccc
Confidence 44444446678899999999999999877541 00 123322222221000 0
Q ss_pred cccHHhhhhcCCcccceeEE---CCEE
Q 023700 232 TKIAKACSDAKIEGFPTWVI---NGQV 255 (278)
Q Consensus 232 ~k~~~lC~~~~V~GyPTw~i---nGk~ 255 (278)
.....+.++++|.++||.++ +|+.
T Consensus 99 ~~~~~l~~~y~v~~iPt~vlId~~G~V 125 (146)
T cd03008 99 EFRRELEAQFSVEELPTVVVLKPDGDV 125 (146)
T ss_pred hHHHHHHHHcCCCCCCEEEEECCCCcE
Confidence 01237888999999999887 6774
No 139
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.42 E-value=3.1e-05 Score=71.71 Aligned_cols=74 Identities=19% Similarity=0.297 Sum_probs=57.3
Q ss_pred ceEEEccCCCHHHHHHHHhhhhHh------hhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE--EecCCC
Q 023700 191 GAKMYGAFWCSHCLEQKQMFGSEA------VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--VLSGEQ 260 (278)
Q Consensus 191 gakmYGA~WCpHC~~qK~lFgkeA------~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk--~y~G~r 260 (278)
=+.||+|||||.|++.++.+..-| -.++.+||.+.+ +-|--++=|...||..- +|+ +|+|.|
T Consensus 42 wmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~n--------pgLsGRF~vtaLptIYHvkDGeFrrysgaR 113 (248)
T KOG0913|consen 42 WMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTN--------PGLSGRFLVTALPTIYHVKDGEFRRYSGAR 113 (248)
T ss_pred HHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEec--------cccceeeEEEecceEEEeeccccccccCcc
Confidence 367899999999999999887643 124679999864 24555688899999664 897 899999
Q ss_pred CHHHHHHHhCCC
Q 023700 261 DLSDLAKASGFP 272 (278)
Q Consensus 261 sle~La~~sG~~ 272 (278)
+-.++..+.-++
T Consensus 114 dk~dfisf~~~r 125 (248)
T KOG0913|consen 114 DKNDFISFEEHR 125 (248)
T ss_pred cchhHHHHHHhh
Confidence 998887766554
No 140
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.41 E-value=0.0004 Score=50.93 Aligned_cols=68 Identities=18% Similarity=0.170 Sum_probs=45.0
Q ss_pred eEEEccCCCHHHHHHHHhhhhHh---hh--cCcEEEccCCCCC--CC----------------------cccHHhhhhcC
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEA---VK--QLNYVECFPDGYR--KG----------------------TKIAKACSDAK 242 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA---~~--~l~yVEC~~dg~n--~~----------------------~k~~~lC~~~~ 242 (278)
+.+|+.+.||||++..+.+.+.. .. ++.++.....+.+ .. .+..++.++.|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 35788999999999998887631 11 2345554433211 00 01235677899
Q ss_pred CcccceeEECCEEecCC
Q 023700 243 IEGFPTWVINGQVLSGE 259 (278)
Q Consensus 243 V~GyPTw~inGk~y~G~ 259 (278)
|.|.||++++|++|.|.
T Consensus 81 ~~g~Pt~v~~~~~~~~~ 97 (98)
T cd02972 81 VTGTPTFVVNGEKYSGA 97 (98)
T ss_pred CCCCCEEEECCEEcCCC
Confidence 99999999999777664
No 141
>PTZ00062 glutaredoxin; Provisional
Probab=97.36 E-value=0.00047 Score=62.20 Aligned_cols=84 Identities=12% Similarity=0.200 Sum_probs=56.9
Q ss_pred HHHHHHhhhcccceEEEcc-----CCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEECC
Q 023700 179 FALSLAKHLHAIGAKMYGA-----FWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVING 253 (278)
Q Consensus 179 ~~~aLAkhL~~~gakmYGA-----~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inG 253 (278)
....+.+.+++..+++|-- ||||+|++.|.+|.+. ...+..+|...|. . -+..+-+..|-..+|...|||
T Consensus 102 ~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~-~i~y~~~DI~~d~--~--~~~~l~~~sg~~TvPqVfI~G 176 (204)
T PTZ00062 102 TVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSS-GVKYETYNIFEDP--D--LREELKVYSNWPTYPQLYVNG 176 (204)
T ss_pred HHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHc-CCCEEEEEcCCCH--H--HHHHHHHHhCCCCCCeEEECC
Confidence 4445666677777888833 6999999999999974 2233345554331 1 123333335777899999999
Q ss_pred EEecCCCCHHHHHH
Q 023700 254 QVLSGEQDLSDLAK 267 (278)
Q Consensus 254 k~y~G~rsle~La~ 267 (278)
+.+-|-..+.+|.+
T Consensus 177 ~~IGG~d~l~~l~~ 190 (204)
T PTZ00062 177 ELIGGHDIIKELYE 190 (204)
T ss_pred EEEcChHHHHHHHH
Confidence 99988887777764
No 142
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.22 E-value=0.001 Score=66.21 Aligned_cols=86 Identities=17% Similarity=0.322 Sum_probs=66.0
Q ss_pred HHHHHHHhhhc-ccceEEEccCCCHHHHHHHHhhhhHhhh--cCc--EEEccCCCCCCCcccHHhhhhcCCcccceeEEC
Q 023700 178 PFALSLAKHLH-AIGAKMYGAFWCSHCLEQKQMFGSEAVK--QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN 252 (278)
Q Consensus 178 ~~~~aLAkhL~-~~gakmYGA~WCpHC~~qK~lFgkeA~~--~l~--yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~in 252 (278)
+..++..+.|. .+.+++|..+-||||.+..+.+.+.|.. ++. .||.. .++++.++++|.+.|+.++|
T Consensus 106 ~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~--------~~~~~~~~~~v~~VP~~~i~ 177 (515)
T TIGR03140 106 EGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGA--------LFQDEVEALGIQGVPAVFLN 177 (515)
T ss_pred HHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEch--------hCHHHHHhcCCcccCEEEEC
Confidence 34555566664 5679999999999999999988775533 232 33333 25799999999999999998
Q ss_pred CE-EecCCCCHHHHHHHhCC
Q 023700 253 GQ-VLSGEQDLSDLAKASGF 271 (278)
Q Consensus 253 Gk-~y~G~rsle~La~~sG~ 271 (278)
|+ .+.|..+.+++.+..+-
T Consensus 178 ~~~~~~g~~~~~~~~~~l~~ 197 (515)
T TIGR03140 178 GEEFHNGRMDLAELLEKLEE 197 (515)
T ss_pred CcEEEecCCCHHHHHHHHhh
Confidence 86 68999999999877653
No 143
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.17 E-value=0.0022 Score=57.97 Aligned_cols=84 Identities=18% Similarity=0.184 Sum_probs=57.9
Q ss_pred HHHhhhcccceEEEccCCCHHHHHHHHhhhhHhhh-cCc--EEEccCCCCC-----CCcccHHhhhhcCCcccceeEE--
Q 023700 182 SLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK-QLN--YVECFPDGYR-----KGTKIAKACSDAKIEGFPTWVI-- 251 (278)
Q Consensus 182 aLAkhL~~~gakmYGA~WCpHC~~qK~lFgkeA~~-~l~--yVEC~~dg~n-----~~~k~~~lC~~~~V~GyPTw~i-- 251 (278)
.|.+.-...|+++|+...||+|+.|.|.+..-+.+ .+. +|..| |.. +......+.++++|+-+|++++
T Consensus 114 ~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~D--G~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~ 191 (215)
T PF13728_consen 114 ALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLD--GRPIPSFPNPRPDPGQAKRLGVKVTPALFLVN 191 (215)
T ss_pred HHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecC--CCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEE
Confidence 33444455789999999999999999977653211 244 45554 310 0011357888999999999887
Q ss_pred -CC-E---EecCCCCHHHHHH
Q 023700 252 -NG-Q---VLSGEQDLSDLAK 267 (278)
Q Consensus 252 -nG-k---~y~G~rsle~La~ 267 (278)
++ + .-.|..++++|.+
T Consensus 192 ~~~~~~~pv~~G~~s~~~L~~ 212 (215)
T PF13728_consen 192 PNTKKWYPVSQGFMSLDELED 212 (215)
T ss_pred CCCCeEEEEeeecCCHHHHHH
Confidence 44 4 3589999999986
No 144
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.17 E-value=0.0014 Score=59.57 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=34.3
Q ss_pred cHHhhhhcCCcccceeEE-CCEEecCCCCHHHHHHHhC
Q 023700 234 IAKACSDAKIEGFPTWVI-NGQVLSGEQDLSDLAKASG 270 (278)
Q Consensus 234 ~~~lC~~~~V~GyPTw~i-nGk~y~G~rsle~La~~sG 270 (278)
+.+++++.||+|.||+++ ||+.+.|.++.++|.++..
T Consensus 191 ~~~la~~lgi~gTPtiv~~~G~~~~G~~~~~~L~~~l~ 228 (232)
T PRK10877 191 HYALGVQFGVQGTPAIVLSNGTLVPGYQGPKEMKAFLD 228 (232)
T ss_pred hHHHHHHcCCccccEEEEcCCeEeeCCCCHHHHHHHHH
Confidence 678999999999999999 9999999999999998864
No 145
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=97.08 E-value=0.0012 Score=55.09 Aligned_cols=32 Identities=19% Similarity=0.058 Sum_probs=25.2
Q ss_pred HHHHHhhhcccceEEEccCCCHHHHHHHHhhhh
Q 023700 180 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS 212 (278)
Q Consensus 180 ~~aLAkhL~~~gakmYGA~WCpHC~~qK~lFgk 212 (278)
.++|+.+-.+.-+++|+|.||| |++..+.+.+
T Consensus 14 ~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~ 45 (152)
T cd00340 14 PVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEA 45 (152)
T ss_pred EEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHH
Confidence 3566666566778889999999 9998887766
No 146
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=96.81 E-value=0.001 Score=58.33 Aligned_cols=66 Identities=21% Similarity=0.432 Sum_probs=42.7
Q ss_pred ccceEEEccCCCHHHHHH----HHhhhhHhh--hc--CcEEEccCCCCC-----------------CCcccHHhhhhcCC
Q 023700 189 AIGAKMYGAFWCSHCLEQ----KQMFGSEAV--KQ--LNYVECFPDGYR-----------------KGTKIAKACSDAKI 243 (278)
Q Consensus 189 ~~gakmYGA~WCpHC~~q----K~lFgkeA~--~~--l~yVEC~~dg~n-----------------~~~k~~~lC~~~~V 243 (278)
++...+|+|.|||.|++. |++|.+... +. +-||.=++++.. .+.+..+++++++|
T Consensus 34 KvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~v 113 (157)
T KOG2501|consen 34 KVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKYEV 113 (157)
T ss_pred cEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhccc
Confidence 566789999999999987 556655211 11 224433332100 01235689999999
Q ss_pred cccceeEE---CCE
Q 023700 244 EGFPTWVI---NGQ 254 (278)
Q Consensus 244 ~GyPTw~i---nGk 254 (278)
+++|++++ ||+
T Consensus 114 ~~iP~l~i~~~dG~ 127 (157)
T KOG2501|consen 114 KGIPALVILKPDGT 127 (157)
T ss_pred CcCceeEEecCCCC
Confidence 99999998 775
No 147
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=96.68 E-value=0.0027 Score=54.72 Aligned_cols=71 Identities=13% Similarity=0.157 Sum_probs=47.7
Q ss_pred eEEEccC------CCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCC----cccceeEECCEEecCCCC
Q 023700 192 AKMYGAF------WCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKI----EGFPTWVINGQVLSGEQD 261 (278)
Q Consensus 192 akmYGA~------WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V----~GyPTw~inGk~y~G~rs 261 (278)
+++|..+ |||+|++.|.+|.+. ...+..+|.+.+... ..++-+..+- ...|..+|||+.+-|..+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~-~V~~~e~DVs~~~~~----~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~de 76 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF-RVKFDERDVSMDSGF----REELRELLGAELKAVSLPRVFVDGRYLGGAEE 76 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC-CCcEEEEECCCCHHH----HHHHHHHhCCCCCCCCCCEEEECCEEEecHHH
Confidence 6899999 999999999999874 223344555433110 2233333343 679999999988887777
Q ss_pred HHHHHH
Q 023700 262 LSDLAK 267 (278)
Q Consensus 262 le~La~ 267 (278)
+.+|.+
T Consensus 77 l~~L~e 82 (147)
T cd03031 77 VLRLNE 82 (147)
T ss_pred HHHHHH
Confidence 666543
No 148
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=96.60 E-value=0.0055 Score=51.78 Aligned_cols=78 Identities=15% Similarity=0.167 Sum_probs=47.0
Q ss_pred HHHHhh-hcccceEEEccCCCHHHHHHHHhhhhHh--hh--cCcEEEccCCCCC------C----------C-------c
Q 023700 181 LSLAKH-LHAIGAKMYGAFWCSHCLEQKQMFGSEA--VK--QLNYVECFPDGYR------K----------G-------T 232 (278)
Q Consensus 181 ~aLAkh-L~~~gakmYGA~WCpHC~~qK~lFgkeA--~~--~l~yVEC~~dg~n------~----------~-------~ 232 (278)
+.|... -.+..+++|++.|||+|.++.+.+.+.. ++ ++.+|-+..|... . + .
T Consensus 17 v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D 96 (171)
T cd02969 17 YSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLD 96 (171)
T ss_pred EeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEEC
Confidence 344443 3456688889999999998877766532 22 3554444433210 0 0 0
Q ss_pred ccHHhhhhcCCcccceeEE---CCE-EecC
Q 023700 233 KIAKACSDAKIEGFPTWVI---NGQ-VLSG 258 (278)
Q Consensus 233 k~~~lC~~~~V~GyPTw~i---nGk-~y~G 258 (278)
...++.++++|.+.|+.+| ||+ +|.+
T Consensus 97 ~~~~~~~~~~v~~~P~~~lid~~G~v~~~~ 126 (171)
T cd02969 97 ETQEVAKAYGAACTPDFFLFDPDGKLVYRG 126 (171)
T ss_pred CchHHHHHcCCCcCCcEEEECCCCeEEEee
Confidence 1235677899999998776 676 3443
No 149
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=96.52 E-value=0.0066 Score=54.12 Aligned_cols=88 Identities=11% Similarity=0.022 Sum_probs=57.4
Q ss_pred HHHhhhcccceEEEccCCCHHHHHHHHhhhhHhhhcCcE--------EEccCCC-----C--------CCCc--------
Q 023700 182 SLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNY--------VECFPDG-----Y--------RKGT-------- 232 (278)
Q Consensus 182 aLAkhL~~~gakmYGA~WCpHC~~qK~lFgkeA~~~l~y--------VEC~~dg-----~--------n~~~-------- 232 (278)
..++-..++-++-|+|-||+.|+.-.|++.+-+.+.++. |+-+.+. . ..+.
T Consensus 53 ~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD 132 (184)
T TIGR01626 53 GSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLD 132 (184)
T ss_pred cHHHcCCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEEC
Confidence 344444777889999999999999999887743333332 4432110 0 0000
Q ss_pred ccHHhhhhcCCccccee--EE--CCE---EecCCCCHHHHHHHh
Q 023700 233 KIAKACSDAKIEGFPTW--VI--NGQ---VLSGEQDLSDLAKAS 269 (278)
Q Consensus 233 k~~~lC~~~~V~GyPTw--~i--nGk---~y~G~rsle~La~~s 269 (278)
++..+..+++|+++|+- +| +|+ ++.|..+.+++.++.
T Consensus 133 ~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 133 DKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred CcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 12345678999999765 55 676 799999999887754
No 150
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=96.36 E-value=0.0054 Score=47.98 Aligned_cols=33 Identities=15% Similarity=0.337 Sum_probs=24.3
Q ss_pred HHHHHhhhcccceEEEccC-CCHHHHHHHHhhhh
Q 023700 180 ALSLAKHLHAIGAKMYGAF-WCSHCLEQKQMFGS 212 (278)
Q Consensus 180 ~~aLAkhL~~~gakmYGA~-WCpHC~~qK~lFgk 212 (278)
.+.|++...+..+++|++. |||+|+++-+.+.+
T Consensus 17 ~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~ 50 (124)
T PF00578_consen 17 TVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNE 50 (124)
T ss_dssp EEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHH
T ss_pred EEEHHHHCCCcEEEEEeCccCccccccchhHHHH
Confidence 3566666556667777788 99999998776655
No 151
>PTZ00056 glutathione peroxidase; Provisional
Probab=96.29 E-value=0.012 Score=52.11 Aligned_cols=33 Identities=6% Similarity=0.041 Sum_probs=25.2
Q ss_pred HHHHHhhhcccceEEEccCCCHHHHHHHHhhhh
Q 023700 180 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS 212 (278)
Q Consensus 180 ~~aLAkhL~~~gakmYGA~WCpHC~~qK~lFgk 212 (278)
.+.|++.-.++.++.|+|.|||.|++..+.+.+
T Consensus 31 ~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~ 63 (199)
T PTZ00056 31 TVPMSSLKNKVLMITNSASKCGLTKKHVDQMNR 63 (199)
T ss_pred EEeHHHhCCCEEEEEEECCCCCChHHHHHHHHH
Confidence 345665555677889999999999988777665
No 152
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=96.24 E-value=0.012 Score=47.17 Aligned_cols=88 Identities=11% Similarity=0.012 Sum_probs=48.9
Q ss_pred HHHHhhhcccceEEEc-cCCCHHHHHHHHhhhhHh--h--hcCcEEEccCCCCCCC---------------cccHHhhhh
Q 023700 181 LSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGSEA--V--KQLNYVECFPDGYRKG---------------TKIAKACSD 240 (278)
Q Consensus 181 ~aLAkhL~~~gakmYG-A~WCpHC~~qK~lFgkeA--~--~~l~yVEC~~dg~n~~---------------~k~~~lC~~ 240 (278)
+.++..-.+..+++|+ +.|||.|.++.+.+.+.. + +.+..|-+..|....- ....++.++
T Consensus 16 ~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ 95 (140)
T cd03017 16 VSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKA 95 (140)
T ss_pred EeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHH
Confidence 3444443555666776 699999998876655421 1 1233333322210000 002366777
Q ss_pred cCCccc---------ceeEE---CCE---EecCCCCHHHHHHH
Q 023700 241 AKIEGF---------PTWVI---NGQ---VLSGEQDLSDLAKA 268 (278)
Q Consensus 241 ~~V~Gy---------PTw~i---nGk---~y~G~rsle~La~~ 268 (278)
++|..+ |+.++ +|+ .+.|...-++|.+.
T Consensus 96 ~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~ 138 (140)
T cd03017 96 YGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEV 138 (140)
T ss_pred hCCccccccccCCcceeEEEECCCCEEEEEEecCCccchHHHH
Confidence 888887 77655 575 57777766666553
No 153
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=96.19 E-value=0.0045 Score=51.83 Aligned_cols=81 Identities=16% Similarity=0.249 Sum_probs=40.2
Q ss_pred CCHHHHHHHhhhcccceEEEccCCCHHHHHHHHhhhhHh--hhc--CcEEEccCCCCCCCcccHHhhhhcCCcccceeEE
Q 023700 176 SSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--VKQ--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI 251 (278)
Q Consensus 176 S~~~~~aLAkhL~~~gakmYGA~WCpHC~~qK~lFgkeA--~~~--l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i 251 (278)
+.+....++..-+...+..+..+|||+|.+.-|.|.+-| ... +.++--+. |... ..+.-. .|.+.+||+++
T Consensus 29 ~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~---~~el-~~~~lt-~g~~~IP~~I~ 103 (129)
T PF14595_consen 29 SEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDE---NKEL-MDQYLT-NGGRSIPTFIF 103 (129)
T ss_dssp -HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHH---HHHH-TTTTTT--SS--SSEEEE
T ss_pred CHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecC---ChhH-HHHHHh-CCCeecCEEEE
Confidence 344445555666667788999999999999999998832 212 34443332 1110 112222 78999999998
Q ss_pred ---CCEEe--cCCCC
Q 023700 252 ---NGQVL--SGEQD 261 (278)
Q Consensus 252 ---nGk~y--~G~rs 261 (278)
+|+.+ =|+|.
T Consensus 104 ~d~~~~~lg~wgerP 118 (129)
T PF14595_consen 104 LDKDGKELGRWGERP 118 (129)
T ss_dssp E-TT--EEEEEESS-
T ss_pred EcCCCCEeEEEcCCC
Confidence 45542 45544
No 154
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=96.18 E-value=0.0023 Score=53.54 Aligned_cols=62 Identities=23% Similarity=0.442 Sum_probs=31.5
Q ss_pred ccCCCHHHHHHHHhhhhH---hhhcCcEEEccCC---CCCCCcccHHhhh--hcCCcccceeEE--CCEEecCC
Q 023700 196 GAFWCSHCLEQKQMFGSE---AVKQLNYVECFPD---GYRKGTKIAKACS--DAKIEGFPTWVI--NGQVLSGE 259 (278)
Q Consensus 196 GA~WCpHC~~qK~lFgke---A~~~l~yVEC~~d---g~n~~~k~~~lC~--~~~V~GyPTw~i--nGk~y~G~ 259 (278)
|-+|||+|.+.+|...+. +.....+|.|... .+++ +....=+ +.+|+++||++. +++|+.+.
T Consensus 34 g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkd--p~n~fR~~p~~~l~~IPTLi~~~~~~rL~e~ 105 (119)
T PF06110_consen 34 GQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKD--PNNPFRTDPDLKLKGIPTLIRWETGERLVEE 105 (119)
T ss_dssp S-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC---TTSHHHH--CC---SSSEEEECTSS-EEEHH
T ss_pred CCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCC--CCCCceEcceeeeeecceEEEECCCCccchh
Confidence 346999999999887662 1123345655421 1111 0112112 489999999987 45565554
No 155
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=96.10 E-value=0.018 Score=50.79 Aligned_cols=72 Identities=24% Similarity=0.290 Sum_probs=43.7
Q ss_pred CHHHHHHHhhhcccceEEEccCCCHHHHHHHH-hhhhHhh-hcC--cE--EEccCCCCCCCcccHHhhhhc--------C
Q 023700 177 SPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGSEAV-KQL--NY--VECFPDGYRKGTKIAKACSDA--------K 242 (278)
Q Consensus 177 ~~~~~aLAkhL~~~gakmYGA~WCpHC~~qK~-lFgkeA~-~~l--~y--VEC~~dg~n~~~k~~~lC~~~--------~ 242 (278)
++.+++.||.-.+.-++..|+.||.-||.|.. .|.+... ..| .| |.+|++. .+++-..+ +
T Consensus 26 ~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree------~Pdid~~y~~~~~~~~~ 99 (163)
T PF03190_consen 26 GEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREE------RPDIDKIYMNAVQAMSG 99 (163)
T ss_dssp SHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-------HHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEecccc------CccHHHHHHHHHHHhcC
Confidence 56788999999999999999999999999974 7876432 222 23 4445543 35665554 7
Q ss_pred CcccceeEE---CCE
Q 023700 243 IEGFPTWVI---NGQ 254 (278)
Q Consensus 243 V~GyPTw~i---nGk 254 (278)
.-|||+-++ +|+
T Consensus 100 ~gGwPl~vfltPdg~ 114 (163)
T PF03190_consen 100 SGGWPLTVFLTPDGK 114 (163)
T ss_dssp ---SSEEEEE-TTS-
T ss_pred CCCCCceEEECCCCC
Confidence 889999776 776
No 156
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=96.08 E-value=0.011 Score=50.35 Aligned_cols=66 Identities=14% Similarity=0.142 Sum_probs=45.2
Q ss_pred CCHHHHHHHHhhhhHh--hh--cCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE---EecCCCCHHHHHHHh
Q 023700 199 WCSHCLEQKQMFGSEA--VK--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQDLSDLAKAS 269 (278)
Q Consensus 199 WCpHC~~qK~lFgkeA--~~--~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk---~y~G~rsle~La~~s 269 (278)
-+|.+-+..-.+.+.+ +. ++.++.++.|. ..+++.++||+++||+++ ||+ ++.|.++.++|.++.
T Consensus 47 r~~E~~D~avvleELa~e~~~~~v~~akVDiD~------~~~LA~~fgV~siPTLl~FkdGk~v~~i~G~~~k~~l~~~I 120 (132)
T PRK11509 47 RTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ------SEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLM 120 (132)
T ss_pred cCCccccHHHHHHHHHHHhcCCceEEEEEECCC------CHHHHHHcCCccCCEEEEEECCEEEEEEeCcCCHHHHHHHH
Confidence 3555655554444422 32 24444444332 369999999999999888 998 689999999998765
Q ss_pred C
Q 023700 270 G 270 (278)
Q Consensus 270 G 270 (278)
.
T Consensus 121 ~ 121 (132)
T PRK11509 121 R 121 (132)
T ss_pred H
Confidence 4
No 157
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=96.06 E-value=0.019 Score=52.85 Aligned_cols=34 Identities=12% Similarity=-0.011 Sum_probs=26.2
Q ss_pred HHHHHHhhhcccceEEEccCCCHHHHHHHHhhhh
Q 023700 179 FALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS 212 (278)
Q Consensus 179 ~~~aLAkhL~~~gakmYGA~WCpHC~~qK~lFgk 212 (278)
..+.|++.-.+..++.|+|.|||.|.++.+.+.+
T Consensus 90 ~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~ 123 (236)
T PLN02399 90 KDVALSKFKGKVLLIVNVASKCGLTSSNYSELSH 123 (236)
T ss_pred CEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHH
Confidence 3456666656677888999999999998776665
No 158
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=96.01 E-value=0.018 Score=47.97 Aligned_cols=33 Identities=15% Similarity=0.083 Sum_probs=24.2
Q ss_pred HHHHHhhhcccceEEEccCCCHHHHHHHHhhhh
Q 023700 180 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS 212 (278)
Q Consensus 180 ~~aLAkhL~~~gakmYGA~WCpHC~~qK~lFgk 212 (278)
.+.|++.-.+.-+++|.|.|||.|++..+.+.+
T Consensus 14 ~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~ 46 (153)
T TIGR02540 14 TVSLEKYRGKVSLVVNVASECGFTDQNYRALQE 46 (153)
T ss_pred EecHHHhCCCEEEEEEeCCCCCchhhhHHHHHH
Confidence 356666656666788999999999987764443
No 159
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=95.91 E-value=0.026 Score=41.08 Aligned_cols=58 Identities=16% Similarity=0.179 Sum_probs=39.9
Q ss_pred EEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEEC-CEEe
Q 023700 193 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN-GQVL 256 (278)
Q Consensus 193 kmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~in-Gk~y 256 (278)
++|+.+|||+|++.+-.+.+. ...+..++.+... + ..++-+-......|+++.+ |+.+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~-gl~~e~~~v~~~~--~---~~~~~~~np~~~vP~L~~~~g~~l 60 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLA-GITVELREVELKN--K---PAEMLAASPKGTVPVLVLGNGTVI 60 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHc-CCCcEEEEeCCCC--C---CHHHHHHCCCCCCCEEEECCCcEE
Confidence 689999999999999988763 2345567776432 2 2344444566789999995 7653
No 160
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=95.86 E-value=0.04 Score=45.27 Aligned_cols=86 Identities=14% Similarity=0.093 Sum_probs=58.3
Q ss_pred HHHHHHHhhhcccceEEEccC----CCHHHHHHHHhhhhHhhh-----cCcEEEccCCCCCCCcccHHhhhhcCCcccce
Q 023700 178 PFALSLAKHLHAIGAKMYGAF----WCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPT 248 (278)
Q Consensus 178 ~~~~aLAkhL~~~gakmYGA~----WCpHC~~qK~lFgkeA~~-----~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPT 248 (278)
..+++.||+=.+.-++++.++ ||.-|+ ..|..+... .+-.+-++-+. .. ..+++...++++||+
T Consensus 7 ~eAl~~ak~e~K~llVylhs~~~~~~~~fc~---~~l~~~~v~~~ln~~fv~w~~dv~~-~e---g~~la~~l~~~~~P~ 79 (116)
T cd02991 7 SQALNDAKQELRFLLVYLHGDDHQDTDEFCR---NTLCAPEVIEYINTRMLFWACSVAK-PE---GYRVSQALRERTYPF 79 (116)
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCccHHHHHH---HHcCCHHHHHHHHcCEEEEEEecCC-hH---HHHHHHHhCCCCCCE
Confidence 356677777677778888899 888884 445443221 12233443322 11 368999999999999
Q ss_pred eEE----CCE-----EecCCCCHHHHHHHhC
Q 023700 249 WVI----NGQ-----VLSGEQDLSDLAKASG 270 (278)
Q Consensus 249 w~i----nGk-----~y~G~rsle~La~~sG 270 (278)
+.+ +++ +++|..+.++|.+.+.
T Consensus 80 ~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~ 110 (116)
T cd02991 80 LAMIMLKDNRMTIVGRLEGLIQPEDLINRLT 110 (116)
T ss_pred EEEEEecCCceEEEEEEeCCCCHHHHHHHHH
Confidence 886 443 6999999999987653
No 161
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=95.81 E-value=0.0089 Score=48.90 Aligned_cols=36 Identities=25% Similarity=0.428 Sum_probs=31.3
Q ss_pred cHHhhhhcCCcccceeEECCEEecCCCCHHHHHHHh
Q 023700 234 IAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKAS 269 (278)
Q Consensus 234 ~~~lC~~~~V~GyPTw~inGk~y~G~rsle~La~~s 269 (278)
..+.+++.+|+|.||++|||+.+.|..++++|.++.
T Consensus 125 ~~~~~~~~~i~~tPt~~inG~~~~~~~~~~~l~~~I 160 (162)
T PF13462_consen 125 DSQLARQLGITGTPTFFINGKYVVGPYTIEELKELI 160 (162)
T ss_dssp HHHHHHHHT-SSSSEEEETTCEEETTTSHHHHHHHH
T ss_pred HHHHHHHcCCccccEEEECCEEeCCCCCHHHHHHHH
Confidence 346778899999999999999999999999999874
No 162
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=95.72 E-value=0.01 Score=48.24 Aligned_cols=33 Identities=18% Similarity=0.143 Sum_probs=25.0
Q ss_pred HHHHHhhhcccceEEEccCC-CHHHHHHHHhhhh
Q 023700 180 ALSLAKHLHAIGAKMYGAFW-CSHCLEQKQMFGS 212 (278)
Q Consensus 180 ~~aLAkhL~~~gakmYGA~W-CpHC~~qK~lFgk 212 (278)
.+.|+....+..+.+|++.| ||+|+++.+.|.+
T Consensus 18 ~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~ 51 (143)
T cd03014 18 EVSLADFAGKVKVISVFPSIDTPVCATQTKRFNK 51 (143)
T ss_pred EEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHH
Confidence 45666655566777888877 7999999988876
No 163
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=95.63 E-value=0.075 Score=49.61 Aligned_cols=80 Identities=16% Similarity=0.094 Sum_probs=54.7
Q ss_pred cccceEEEccCCCHHHHHHHHhhhhHhh-hcCcEEEccCCCCCC-----CcccHHhhhhcCCcccceeEE---C-CE---
Q 023700 188 HAIGAKMYGAFWCSHCLEQKQMFGSEAV-KQLNYVECFPDGYRK-----GTKIAKACSDAKIEGFPTWVI---N-GQ--- 254 (278)
Q Consensus 188 ~~~gakmYGA~WCpHC~~qK~lFgkeA~-~~l~yVEC~~dg~n~-----~~k~~~lC~~~~V~GyPTw~i---n-Gk--- 254 (278)
++.|++||+-.-||+|+++.|....-+. -.+..+...-||... ........++.+|+-+|++++ + ++
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~p 222 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVRP 222 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEEE
Confidence 5578999999999999999997765321 235554444444211 011234567899999999887 3 34
Q ss_pred EecCCCCHHHHHH
Q 023700 255 VLSGEQDLSDLAK 267 (278)
Q Consensus 255 ~y~G~rsle~La~ 267 (278)
.-.|..+.++|.+
T Consensus 223 v~~G~iS~deL~~ 235 (248)
T PRK13703 223 LSYGFITQDDLAK 235 (248)
T ss_pred EeeccCCHHHHHH
Confidence 3589999999964
No 164
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=95.56 E-value=0.067 Score=50.08 Aligned_cols=86 Identities=9% Similarity=0.079 Sum_probs=56.5
Q ss_pred HHHhhhcccceEEEccCCCHHHHHHHHhhhhHhhh-cCcEEEccCCCCC-C----CcccHHhhhhcCCcccceeEE---C
Q 023700 182 SLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK-QLNYVECFPDGYR-K----GTKIAKACSDAKIEGFPTWVI---N 252 (278)
Q Consensus 182 aLAkhL~~~gakmYGA~WCpHC~~qK~lFgkeA~~-~l~yVEC~~dg~n-~----~~k~~~lC~~~~V~GyPTw~i---n 252 (278)
++.+.-++.|++||+..-||+|+++.|....-+.+ .+..+-..-||.. + ......+.++.||+-+|++++ +
T Consensus 144 ~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~ 223 (256)
T TIGR02739 144 AIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPK 223 (256)
T ss_pred HHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECC
Confidence 33333355789999999999999999976542211 2443333334421 0 011245788999999999887 4
Q ss_pred -CE---EecCCCCHHHHHH
Q 023700 253 -GQ---VLSGEQDLSDLAK 267 (278)
Q Consensus 253 -Gk---~y~G~rsle~La~ 267 (278)
++ .-.|..+.++|.+
T Consensus 224 t~~~~pv~~G~iS~deL~~ 242 (256)
T TIGR02739 224 SQKMSPLAYGFISQDELKE 242 (256)
T ss_pred CCcEEEEeeccCCHHHHHH
Confidence 33 3489999999975
No 165
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=95.52 E-value=0.058 Score=36.68 Aligned_cols=60 Identities=13% Similarity=0.033 Sum_probs=40.8
Q ss_pred EEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEECCEEec
Q 023700 193 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLS 257 (278)
Q Consensus 193 kmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inGk~y~ 257 (278)
++|+.++||+|++.+.++... ...+..++++.+.... .++=+...-..+|++..+|+.+.
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~-~i~~~~~~~~~~~~~~----~~~~~~~~~~~~P~l~~~~~~~~ 61 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEK-GLPYELVPVDLGEGEQ----EEFLALNPLGKVPVLEDGGLVLT 61 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHc-CCCcEEEEeCCCCCCC----HHHHhcCCCCCCCEEEECCEEEE
Confidence 689999999999999988763 2345567776542111 12333456778999999987654
No 166
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=95.49 E-value=0.022 Score=45.83 Aligned_cols=64 Identities=19% Similarity=0.317 Sum_probs=36.5
Q ss_pred HHHHhhhc-c-cceEEEccCCCHHHHHHHHhhhhH--hh--hcCcEEEccCCCCCCCcccHHhhhhcCCcccce
Q 023700 181 LSLAKHLH-A-IGAKMYGAFWCSHCLEQKQMFGSE--AV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPT 248 (278)
Q Consensus 181 ~aLAkhL~-~-~gakmYGA~WCpHC~~qK~lFgke--A~--~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPT 248 (278)
+.+.+... + .-+.+|.+.|||.|+++.+.+.+. .+ ..+..|-+..+... ...+..++.++ .||.
T Consensus 15 ~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~---~~~~~~~~~~~-~~p~ 84 (149)
T cd02970 15 VTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPE---KLEAFDKGKFL-PFPV 84 (149)
T ss_pred EchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHH---HHHHHHHhcCC-CCeE
Confidence 34444442 2 335566799999999998877663 22 23555555544211 12345666665 3663
No 167
>PLN02412 probable glutathione peroxidase
Probab=95.24 E-value=0.052 Score=46.50 Aligned_cols=33 Identities=12% Similarity=-0.034 Sum_probs=23.3
Q ss_pred HHHHHhhhcccceEEEccCCCHHHHHHHHhhhh
Q 023700 180 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS 212 (278)
Q Consensus 180 ~~aLAkhL~~~gakmYGA~WCpHC~~qK~lFgk 212 (278)
.+.|+..-.+.-+++|+|.|||.|+++.+.|.+
T Consensus 21 ~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~ 53 (167)
T PLN02412 21 DVSLNQYKGKVLLIVNVASKCGLTDSNYKELNV 53 (167)
T ss_pred EEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHH
Confidence 345555444566777889999999987665554
No 168
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=95.13 E-value=0.025 Score=47.73 Aligned_cols=36 Identities=25% Similarity=0.481 Sum_probs=32.0
Q ss_pred HHhhhhcCCcccceeEECCEEecCCCCHHHHHHHhC
Q 023700 235 AKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASG 270 (278)
Q Consensus 235 ~~lC~~~~V~GyPTw~inGk~y~G~rsle~La~~sG 270 (278)
.+..++.||.|.||++|||+.+.|...++.|.+..+
T Consensus 157 ~~~a~~~gi~gvPtfvv~g~~~~G~~~l~~~~~~l~ 192 (192)
T cd03022 157 TEEAIARGVFGVPTFVVDGEMFWGQDRLDMLEEALA 192 (192)
T ss_pred HHHHHHcCCCcCCeEEECCeeecccccHHHHHHHhC
Confidence 456778999999999999999999999999988754
No 169
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.08 E-value=0.05 Score=48.46 Aligned_cols=83 Identities=16% Similarity=0.213 Sum_probs=54.8
Q ss_pred cceEEEccCCCHHHHHHHH-hhhhHh----hhc-CcEEEccCCC-----CCCCc-----ccHHhhhhcCCcccceeEE--
Q 023700 190 IGAKMYGAFWCSHCLEQKQ-MFGSEA----VKQ-LNYVECFPDG-----YRKGT-----KIAKACSDAKIEGFPTWVI-- 251 (278)
Q Consensus 190 ~gakmYGA~WCpHC~~qK~-lFgkeA----~~~-l~yVEC~~dg-----~n~~~-----k~~~lC~~~~V~GyPTw~i-- 251 (278)
--..||..+-|+.|.++|. +|.+.. .+. +..|+..-.+ .+.++ +..+|++.++|++.||+++
T Consensus 44 ylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfvFfd 123 (182)
T COG2143 44 YLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFVFFD 123 (182)
T ss_pred EEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEEEEc
Confidence 3477999999999999975 565532 221 2222221110 11111 2459999999999999998
Q ss_pred -CCE---EecCCCCHHHHHHHhCCC
Q 023700 252 -NGQ---VLSGEQDLSDLAKASGFP 272 (278)
Q Consensus 252 -nGk---~y~G~rsle~La~~sG~~ 272 (278)
+|+ .++|=...|+......|-
T Consensus 124 k~Gk~Il~lPGY~ppe~Fl~vlkYV 148 (182)
T COG2143 124 KTGKTILELPGYMPPEQFLAVLKYV 148 (182)
T ss_pred CCCCEEEecCCCCCHHHHHHHHHHH
Confidence 555 578988888888776654
No 170
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=95.08 E-value=0.11 Score=44.31 Aligned_cols=33 Identities=12% Similarity=0.070 Sum_probs=22.8
Q ss_pred HHHHHhhhcccceEEEc-cCCCHHHHHHHHhhhh
Q 023700 180 ALSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGS 212 (278)
Q Consensus 180 ~~aLAkhL~~~gakmYG-A~WCpHC~~qK~lFgk 212 (278)
.+.|.+...+..+++|+ +.|||+|..+.+.|.+
T Consensus 21 ~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~ 54 (173)
T cd03015 21 EISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSD 54 (173)
T ss_pred EEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHH
Confidence 34555544455566666 8999999998777755
No 171
>PTZ00256 glutathione peroxidase; Provisional
Probab=94.99 E-value=0.046 Score=47.38 Aligned_cols=33 Identities=12% Similarity=0.034 Sum_probs=22.9
Q ss_pred HHHHHhhhcccc-eEEEccCCCHHHHHHHHhhhh
Q 023700 180 ALSLAKHLHAIG-AKMYGAFWCSHCLEQKQMFGS 212 (278)
Q Consensus 180 ~~aLAkhL~~~g-akmYGA~WCpHC~~qK~lFgk 212 (278)
.+.|++.-.+.. +++|.|.|||.|++..|.+.+
T Consensus 32 ~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~ 65 (183)
T PTZ00256 32 LVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVE 65 (183)
T ss_pred EEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHH
Confidence 355655544433 456789999999998877765
No 172
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=94.87 E-value=0.077 Score=37.76 Aligned_cols=61 Identities=10% Similarity=0.085 Sum_probs=38.7
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE-CCEE
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-NGQV 255 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i-nGk~ 255 (278)
+++|+.+|||+|++.+-++.+. ...+..++++..... .+..+.-+...-...|++++ ||+.
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~-~l~~~~~~v~~~~~~--~~~~~~~~~~p~~~vP~l~~~~~~~ 62 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEK-GIDVPLVTVDLAAGE--QRSPEFLAKNPAGTVPVLELDDGTV 62 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHc-CCCceEEEeecccCc--cCCHHHHhhCCCCCCCEEEeCCCCE
Confidence 3789999999999999988763 223445666532111 11234444445567899998 5543
No 173
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=94.58 E-value=0.032 Score=47.66 Aligned_cols=33 Identities=15% Similarity=0.042 Sum_probs=24.7
Q ss_pred HHHHHhhhcccceEEEccCC-CHHHHHHHHhhhh
Q 023700 180 ALSLAKHLHAIGAKMYGAFW-CSHCLEQKQMFGS 212 (278)
Q Consensus 180 ~~aLAkhL~~~gakmYGA~W-CpHC~~qK~lFgk 212 (278)
.+.|++.-.+..++.|+|.| ||.|+++.+.|.+
T Consensus 36 ~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~ 69 (167)
T PRK00522 36 DVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQ 69 (167)
T ss_pred EEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHH
Confidence 35566654456677888988 9999999887766
No 174
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=94.50 E-value=0.17 Score=46.58 Aligned_cols=38 Identities=24% Similarity=0.250 Sum_probs=32.5
Q ss_pred cHHhhhhcCCcccceeEE-C--CE--EecCCCCHHHHHHHhCC
Q 023700 234 IAKACSDAKIEGFPTWVI-N--GQ--VLSGEQDLSDLAKASGF 271 (278)
Q Consensus 234 ~~~lC~~~~V~GyPTw~i-n--Gk--~y~G~rsle~La~~sG~ 271 (278)
+.++.++.||+|-||+++ | |+ ...|-.+.++|.+++|-
T Consensus 208 n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~~ 250 (251)
T PRK11657 208 NQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMGP 250 (251)
T ss_pred HHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhCC
Confidence 345788899999999998 6 65 68999999999999874
No 175
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=94.43 E-value=0.12 Score=37.37 Aligned_cols=58 Identities=16% Similarity=0.263 Sum_probs=36.0
Q ss_pred EEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEEC-CEEec
Q 023700 193 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN-GQVLS 257 (278)
Q Consensus 193 kmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~in-Gk~y~ 257 (278)
+.|+.+|||+|++.+.++... ...+..++.+.+. . ...=+..+-...|+++.+ |+...
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~-gl~~~~~~~~~~~--~----~~~~~~~~~~~vP~L~~~~~~~l~ 60 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLK-NIPVEQIILQNDD--E----ATPIRMIGAKQVPILEKDDGSFMA 60 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHc-CCCeEEEECCCCc--h----HHHHHhcCCCccCEEEeCCCeEee
Confidence 578899999999999998863 2233445555321 1 111122344568999886 65544
No 176
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=94.28 E-value=0.15 Score=36.70 Aligned_cols=61 Identities=18% Similarity=-0.020 Sum_probs=40.5
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEECCEE
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV 255 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inGk~ 255 (278)
+++|+.++||+|++.+-++.+. ...+..++++... +..+..++-+...-...|+++.+|..
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~-gi~~e~~~i~~~~--~~~~~~~~~~~~p~~~vP~l~~~~~~ 61 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKAL-GLELNLKEVNLMK--GEHLKPEFLKLNPQHTVPTLVDNGFV 61 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHc-CCCCEEEEecCcc--CCcCCHHHHhhCcCCCCCEEEECCEE
Confidence 4789999999999999888763 2345566776421 11123455555556679999888754
No 177
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=94.12 E-value=0.054 Score=45.64 Aligned_cols=35 Identities=29% Similarity=0.510 Sum_probs=31.4
Q ss_pred HHhhhhcCCcccceeEECCE-EecCCCCHHHHHHHh
Q 023700 235 AKACSDAKIEGFPTWVINGQ-VLSGEQDLSDLAKAS 269 (278)
Q Consensus 235 ~~lC~~~~V~GyPTw~inGk-~y~G~rsle~La~~s 269 (278)
.+...+.||.|.||+++||+ .+.|.+.+++|.+..
T Consensus 157 ~~~a~~~gv~GvP~~vv~g~~~~~G~~~~~~l~~~l 192 (193)
T PF01323_consen 157 TAEARQLGVFGVPTFVVNGKYRFFGADRLDELEDAL 192 (193)
T ss_dssp HHHHHHTTCSSSSEEEETTTEEEESCSSHHHHHHHH
T ss_pred HHHHHHcCCcccCEEEECCEEEEECCCCHHHHHHHh
Confidence 46678899999999999999 899999999998764
No 178
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=93.94 E-value=0.06 Score=43.44 Aligned_cols=49 Identities=10% Similarity=0.236 Sum_probs=33.2
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcC
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAK 242 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~ 242 (278)
+++|+-+||+.|++.+.++.+. ...+.++|...+.... ....++.++.|
T Consensus 1 i~iy~~~~C~~crka~~~L~~~-~i~~~~~di~~~p~s~-~eL~~~l~~~g 49 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEAR-GVAYTFHDYRKDGLDA-ATLERWLAKVG 49 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc-CCCeEEEecccCCCCH-HHHHHHHHHhC
Confidence 4799999999999999999873 3345566665443222 22556676665
No 179
>PRK13190 putative peroxiredoxin; Provisional
Probab=93.88 E-value=0.19 Score=44.46 Aligned_cols=90 Identities=12% Similarity=0.058 Sum_probs=52.4
Q ss_pred HHHHHhhhcccceE-EEccCCCHHHHHHHHhhhhH--hhhc--Cc--EEEccCCCC----------CCC---------cc
Q 023700 180 ALSLAKHLHAIGAK-MYGAFWCSHCLEQKQMFGSE--AVKQ--LN--YVECFPDGY----------RKG---------TK 233 (278)
Q Consensus 180 ~~aLAkhL~~~gak-mYGA~WCpHC~~qK~lFgke--A~~~--l~--yVEC~~dg~----------n~~---------~k 233 (278)
.+.|...-.+..++ +|.|.|||.|....+.|.+. ++++ +. -|.++.... +.+ ..
T Consensus 19 ~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~ 98 (202)
T PRK13190 19 PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADI 98 (202)
T ss_pred cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECC
Confidence 35666654443444 68999999999987766552 1221 21 222221000 000 01
Q ss_pred cHHhhhhcCCc------ccceeEE---CCEE-------ecCCCCHHHHHHHh
Q 023700 234 IAKACSDAKIE------GFPTWVI---NGQV-------LSGEQDLSDLAKAS 269 (278)
Q Consensus 234 ~~~lC~~~~V~------GyPTw~i---nGk~-------y~G~rsle~La~~s 269 (278)
..++++++||. .+|+.+| +|+. ..+.|+.+||.+..
T Consensus 99 ~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l 150 (202)
T PRK13190 99 DKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRIT 150 (202)
T ss_pred ChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHH
Confidence 34788889984 5898665 6762 15679999997765
No 180
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=93.71 E-value=0.3 Score=34.94 Aligned_cols=59 Identities=14% Similarity=0.085 Sum_probs=38.6
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEECCEEe
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVL 256 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inGk~y 256 (278)
+++|+.++||.|++.+-++.+. ...+..++.+.+ ++ ..++-+...-...|+++.+|...
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~-gi~~~~~~v~~~--~~---~~~~~~~~p~~~vP~l~~~~~~l 59 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEK-GVSVEIIDVDPD--NP---PEDLAELNPYGTVPTLVDRDLVL 59 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHc-CCccEEEEcCCC--CC---CHHHHhhCCCCCCCEEEECCEEE
Confidence 4689999999999999988763 223344555432 22 23444445666899998777543
No 181
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=93.55 E-value=0.09 Score=41.51 Aligned_cols=34 Identities=12% Similarity=0.305 Sum_probs=26.5
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCC
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPD 226 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~d 226 (278)
+++|+-++||.|++.+.+|.+. ...+.++|...+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~-~i~~~~idi~~~ 34 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEH-GIEYEFIDYLKE 34 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHc-CCCcEEEeeccC
Confidence 4789999999999999999873 334556776644
No 182
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=93.48 E-value=0.087 Score=42.57 Aligned_cols=50 Identities=16% Similarity=0.240 Sum_probs=31.4
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCC
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKI 243 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V 243 (278)
+++|+-++||+|++.+.+|.+. ...+.++|...+.... ....++.++.++
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~-~i~~~~idi~~~~~~~-~el~~~~~~~~~ 50 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEH-GVDYTAIDIVEEPPSK-EELKKWLEKSGL 50 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHc-CCceEEecccCCcccH-HHHHHHHHHcCC
Confidence 4789999999999999999874 2234456555443111 113455555543
No 183
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=93.40 E-value=0.24 Score=43.82 Aligned_cols=90 Identities=12% Similarity=0.079 Sum_probs=50.6
Q ss_pred HHHHHhhhcccceEEEc-cCCCHHHHHHHHhhhhH--hhhc--CcEEEccCCCCC------------CC-------cccH
Q 023700 180 ALSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGSE--AVKQ--LNYVECFPDGYR------------KG-------TKIA 235 (278)
Q Consensus 180 ~~aLAkhL~~~gakmYG-A~WCpHC~~qK~lFgke--A~~~--l~yVEC~~dg~n------------~~-------~k~~ 235 (278)
.+.|+....+..+.+|+ |.|||.|..+.+.|.+. .+++ +..|-+..|... .+ ....
T Consensus 23 ~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~ 102 (187)
T PRK10382 23 EVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTG 102 (187)
T ss_pred EEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCch
Confidence 34455555555566666 99999999987766552 1211 111111111100 00 0135
Q ss_pred HhhhhcCC----ccc--ceeEE---CCE-----Ee--cCCCCHHHHHHHh
Q 023700 236 KACSDAKI----EGF--PTWVI---NGQ-----VL--SGEQDLSDLAKAS 269 (278)
Q Consensus 236 ~lC~~~~V----~Gy--PTw~i---nGk-----~y--~G~rsle~La~~s 269 (278)
++++++|| .|. |+-+| +|+ .+ ...++.+|+.+..
T Consensus 103 ~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l 152 (187)
T PRK10382 103 ALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKI 152 (187)
T ss_pred HHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHH
Confidence 88999999 477 88554 676 12 3447888887765
No 184
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=93.37 E-value=0.1 Score=42.29 Aligned_cols=33 Identities=6% Similarity=0.087 Sum_probs=22.5
Q ss_pred HHHHHhhhc-ccceEEE-ccCCCHHHHHHHHhhhh
Q 023700 180 ALSLAKHLH-AIGAKMY-GAFWCSHCLEQKQMFGS 212 (278)
Q Consensus 180 ~~aLAkhL~-~~gakmY-GA~WCpHC~~qK~lFgk 212 (278)
.+.|++... +..+++| .|.|||.|.++.+.+.+
T Consensus 19 ~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~ 53 (149)
T cd03018 19 EVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRD 53 (149)
T ss_pred EEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHH
Confidence 466666544 4444444 49999999998776654
No 185
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=93.16 E-value=0.22 Score=44.07 Aligned_cols=32 Identities=13% Similarity=0.027 Sum_probs=22.7
Q ss_pred HHHHhhhc-c-cceEEEccCCCHHHHHHHHhhhh
Q 023700 181 LSLAKHLH-A-IGAKMYGAFWCSHCLEQKQMFGS 212 (278)
Q Consensus 181 ~aLAkhL~-~-~gakmYGA~WCpHC~~qK~lFgk 212 (278)
+.|+.... + +-+.+|.|.|||.|..+.+.|.+
T Consensus 17 ~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~ 50 (203)
T cd03016 17 IKFHDYLGDSWGILFSHPADFTPVCTTELGAFAK 50 (203)
T ss_pred EeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHH
Confidence 55665544 2 23447999999999999776655
No 186
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=93.15 E-value=0.28 Score=35.90 Aligned_cols=53 Identities=13% Similarity=0.192 Sum_probs=35.3
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEEC
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN 252 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~in 252 (278)
+++|+.+.||.|++.+.++.+. ...+..++.+.. + ..++ +..+-...|+++++
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~-gi~y~~~~~~~~--~----~~~~-~~~~~~~vP~l~~~ 54 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH-GIPYEVVEVNPV--S----RKEI-KWSSYKKVPILRVE 54 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC-CCceEEEECCch--h----HHHH-HHhCCCccCEEEEC
Confidence 6789999999999999888763 122334554332 1 1233 34566789999986
No 187
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.14 E-value=0.076 Score=45.22 Aligned_cols=62 Identities=23% Similarity=0.436 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHhhhhH---hhhcCcEEEccCCCCCCC--cccHHhhhhcCC-cccceeEE-C--CEEecCCC
Q 023700 198 FWCSHCLEQKQMFGSE---AVKQLNYVECFPDGYRKG--TKIAKACSDAKI-EGFPTWVI-N--GQVLSGEQ 260 (278)
Q Consensus 198 ~WCpHC~~qK~lFgke---A~~~l~yVEC~~dg~n~~--~k~~~lC~~~~V-~GyPTw~i-n--Gk~y~G~r 260 (278)
+|||+|.+..|.+.+. |..++.+|-|+... +.. ++....=.+.++ .+.||+.- + ++|..|.|
T Consensus 43 SWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~-rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~~~~rL~~~q 113 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHAPEDVHFVHVYVGN-RPYWKDPANPFRKDPGILTAVPTLLRWKRQPQRLDGLQ 113 (128)
T ss_pred cCCchHHHhhHHHHHHHHhCCCceEEEEEEecC-CCcccCCCCccccCCCceeecceeeEEcCccccchHhH
Confidence 5999999999998872 33355666665321 110 112233344566 99999876 3 33555443
No 188
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=92.92 E-value=0.1 Score=42.27 Aligned_cols=64 Identities=17% Similarity=0.329 Sum_probs=39.4
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE-CCEEecC
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-NGQVLSG 258 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i-nGk~y~G 258 (278)
+++|+-++||+|++.+.+|.+. ...+.+||...+.... ++..++.+..+. |+=.++- +|+.|..
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~-~i~~~~idi~~~~~~~-~el~~l~~~~~~-~~~~lin~~~~~~k~ 65 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEAN-GIEYQFIDIGEDGPTR-EELLDILSLLED-GIDPLLNTRGQSYRA 65 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc-CCceEEEecCCChhhH-HHHHHHHHHcCC-CHHHheeCCCcchhh
Confidence 4689999999999999999873 2345567765443221 224455565553 3333333 6665544
No 189
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.57 E-value=0.19 Score=39.82 Aligned_cols=65 Identities=17% Similarity=0.322 Sum_probs=49.1
Q ss_pred EEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCC--------CcccHHhhhhcCCcccceeEE-CCEEecC
Q 023700 193 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRK--------GTKIAKACSDAKIEGFPTWVI-NGQVLSG 258 (278)
Q Consensus 193 kmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~--------~~k~~~lC~~~~V~GyPTw~i-nGk~y~G 258 (278)
++|||--||+|...++.|.+. ..+.+|||.+....|= ..+.-+-.+.+|--|+|.+.. ||+..-|
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl-~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~ 78 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL-NVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG 78 (85)
T ss_pred eeeccccCcchHHHHHHHHHc-CCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe
Confidence 899999999999999999885 3467899998665331 112334566788889999998 7877666
No 190
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=92.41 E-value=0.46 Score=34.98 Aligned_cols=59 Identities=15% Similarity=0.117 Sum_probs=43.0
Q ss_pred EEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEECCEEecC
Q 023700 194 MYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSG 258 (278)
Q Consensus 194 mYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inGk~y~G 258 (278)
.|+.+|||.|++.+-.+... ...+.+++++...+ ..++-+...-.-.|+++.||+.+..
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~-~i~~~~~~v~~~~~-----~~~~~~~~p~~~vPvL~~~g~~l~d 59 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEK-GIPYELVPVDPEEK-----RPEFLKLNPKGKVPVLVDDGEVLTD 59 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHH-TEEEEEEEEBTTST-----SHHHHHHSTTSBSSEEEETTEEEES
T ss_pred CCCcCCChHHHHHHHHHHHc-CCeEEEeccCcccc-----hhHHHhhcccccceEEEECCEEEeC
Confidence 48899999999999888763 23455677765431 3466666777789999999886553
No 191
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=92.33 E-value=0.18 Score=43.09 Aligned_cols=35 Identities=29% Similarity=0.424 Sum_probs=30.4
Q ss_pred HHhhhhcCCcccceeEECCE-EecCCCCHHHHHHHh
Q 023700 235 AKACSDAKIEGFPTWVINGQ-VLSGEQDLSDLAKAS 269 (278)
Q Consensus 235 ~~lC~~~~V~GyPTw~inGk-~y~G~rsle~La~~s 269 (278)
.+..++.||.|.||+++||+ .+.|.++.|.|.+..
T Consensus 165 ~~~a~~~gv~G~Pt~vv~g~~~~~G~~~~~~~~~~i 200 (201)
T cd03024 165 EARARQLGISGVPFFVFNGKYAVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHCCCCcCCEEEECCeEeecCCCCHHHHHHHh
Confidence 46678899999999999987 689999999998764
No 192
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=92.29 E-value=0.92 Score=34.47 Aligned_cols=69 Identities=22% Similarity=0.220 Sum_probs=53.2
Q ss_pred eEEEccCCCHHHHHHHHhhhhHh-hh--cCcEEEccCCCCCCCcccHHhhhhcCCcccceeEECC-------EEecCCCC
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEA-VK--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVING-------QVLSGEQD 261 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA-~~--~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inG-------k~y~G~rs 261 (278)
+.+|+-+-|+=|.+.++++.+.+ .. .+..||.+.| .++-.+++. -.|-+.++| +...+.-+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d--------~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d 72 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDED--------PELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFD 72 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTT--------HHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCC--------HHHHHHhcC-CCCEEEEcCcccccccceeCCCCC
Confidence 57999999999999999998632 12 3568888743 468888996 799999966 57888889
Q ss_pred HHHHHHHh
Q 023700 262 LSDLAKAS 269 (278)
Q Consensus 262 le~La~~s 269 (278)
.++|.++.
T Consensus 73 ~~~L~~~L 80 (81)
T PF05768_consen 73 EEQLRAWL 80 (81)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998874
No 193
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=90.87 E-value=0.32 Score=40.66 Aligned_cols=34 Identities=12% Similarity=0.278 Sum_probs=25.6
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCC
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPD 226 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~d 226 (278)
+++|+-+|||.|++.+.+|.+. ...+.++|...+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-gi~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-DIPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-CCCcEEeeccCC
Confidence 6799999999999999999873 223445665544
No 194
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=90.81 E-value=0.58 Score=41.09 Aligned_cols=90 Identities=8% Similarity=0.072 Sum_probs=51.9
Q ss_pred HHHHHhhhcccceEEEc-cCCCHHHHHHHHhhhhH--hhh--cCc--EEEccCCCCC-----C--------C-------c
Q 023700 180 ALSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGSE--AVK--QLN--YVECFPDGYR-----K--------G-------T 232 (278)
Q Consensus 180 ~~aLAkhL~~~gakmYG-A~WCpHC~~qK~lFgke--A~~--~l~--yVEC~~dg~n-----~--------~-------~ 232 (278)
.+.|.....+..+++|+ +.||++|......|.+. .++ .+. .|.++....+ . + .
T Consensus 28 ~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D 107 (199)
T PTZ00253 28 KISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLAD 107 (199)
T ss_pred EEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEEC
Confidence 45677766666777777 48899999877655542 122 222 2333321100 0 0 0
Q ss_pred ccHHhhhhcCCc------ccceeEE---CCEE-------ecCCCCHHHHHHHh
Q 023700 233 KIAKACSDAKIE------GFPTWVI---NGQV-------LSGEQDLSDLAKAS 269 (278)
Q Consensus 233 k~~~lC~~~~V~------GyPTw~i---nGk~-------y~G~rsle~La~~s 269 (278)
...++++.+|+. .||+.+| +|+. ..-.|+++++.+..
T Consensus 108 ~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l 160 (199)
T PTZ00253 108 KTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLL 160 (199)
T ss_pred cHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHH
Confidence 135788999985 3788665 5651 14457887777654
No 195
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=90.66 E-value=0.34 Score=38.87 Aligned_cols=32 Identities=13% Similarity=0.212 Sum_probs=22.4
Q ss_pred HHHHhhhcccceEEEccCCCHH-HHHHHHhhhh
Q 023700 181 LSLAKHLHAIGAKMYGAFWCSH-CLEQKQMFGS 212 (278)
Q Consensus 181 ~aLAkhL~~~gakmYGA~WCpH-C~~qK~lFgk 212 (278)
+.+.+.-.+..++.|++.||+. |.++.+.+.+
T Consensus 15 ~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~ 47 (142)
T cd02968 15 VTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQ 47 (142)
T ss_pred EchHHhCCCEEEEEEEcCCCcccCHHHHHHHHH
Confidence 3444433445677888999997 9988776655
No 196
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=90.29 E-value=1.2 Score=31.68 Aligned_cols=61 Identities=18% Similarity=0.220 Sum_probs=38.2
Q ss_pred EEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEECCEEe
Q 023700 193 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVL 256 (278)
Q Consensus 193 kmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inGk~y 256 (278)
++|+-+.||+|++.+-++.+. ...+..++.+... ...+..+.-+...-...|+++.+|+.+
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~-~~~~~~~~i~~~~--~~~~~~~~~~~~p~~~vP~l~~~~~~i 62 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALL-GIPYEWVEVDILK--GETRTPEFLALNPNGEVPVLELDGRVL 62 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHc-CCCcEEEEecCCC--cccCCHHHHHhCCCCCCCEEEECCEEE
Confidence 688899999999999888763 2334455554321 111123433434455689999988654
No 197
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=90.12 E-value=1.1 Score=34.26 Aligned_cols=58 Identities=12% Similarity=0.190 Sum_probs=39.8
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEEC-CEE
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN-GQV 255 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~in-Gk~ 255 (278)
++.|+.+.||+|++.+-++.+. ...+..++.+.+. . ..++-+.......|.++++ |+.
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~-gl~~~~~~v~~~~--~---~~~~~~~np~~~vPvL~~~~g~~ 77 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAK-NIPHEVININLKD--K---PDWFLEKNPQGKVPALEIDEGKV 77 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHc-CCCCeEEEeCCCC--C---cHHHHhhCCCCCcCEEEECCCCE
Confidence 7899999999999999888763 2234556665432 1 2334444566779999997 654
No 198
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=89.89 E-value=0.32 Score=40.39 Aligned_cols=29 Identities=28% Similarity=0.548 Sum_probs=24.6
Q ss_pred HHhhhhcCCcccceeEECCEEecCCCCHH
Q 023700 235 AKACSDAKIEGFPTWVINGQVLSGEQDLS 263 (278)
Q Consensus 235 ~~lC~~~~V~GyPTw~inGk~y~G~rsle 263 (278)
.+++++.||.|.||++|||+.+.+.++++
T Consensus 133 ~~~~~~~gi~gTPt~iInG~~~~~~~~~~ 161 (178)
T cd03019 133 EKLAKKYKITGVPAFVVNGKYVVNPSAIG 161 (178)
T ss_pred HHHHHHcCCCCCCeEEECCEEEEChhhcc
Confidence 46788999999999999999887777554
No 199
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=89.56 E-value=0.43 Score=39.40 Aligned_cols=32 Identities=13% Similarity=-0.007 Sum_probs=19.8
Q ss_pred HHHHhhhcccceEEEc-cCCCHHHHHHHHhhhh
Q 023700 181 LSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGS 212 (278)
Q Consensus 181 ~aLAkhL~~~gakmYG-A~WCpHC~~qK~lFgk 212 (278)
+.|+..-.+..++.|+ +.|||+|..+.+.|.+
T Consensus 23 ~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~ 55 (154)
T PRK09437 23 VSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRD 55 (154)
T ss_pred EeHHHhCCCCEEEEEECCCCCCchHHHHHHHHH
Confidence 4555543344555555 4689999887665543
No 200
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=89.44 E-value=0.99 Score=33.42 Aligned_cols=53 Identities=15% Similarity=0.140 Sum_probs=35.0
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhhcCc--EEEccCCCCCCCcccHHhhhhcCCcccceeEE
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVKQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI 251 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~~l~--yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i 251 (278)
+++|+.++||+|++.+..+.+. .++ .+++.++. . +..++=+...-...|+++.
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~---gi~y~~~~v~~~~-~---~~~~~~~~~p~~~vP~l~~ 56 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTEL---ELDVILYPCPKGS-P---KRDKFLEKGGKVQVPYLVD 56 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHc---CCcEEEEECCCCh-H---HHHHHHHhCCCCcccEEEe
Confidence 5789999999999999988763 344 46664321 1 1233333345567999987
No 201
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.36 E-value=0.47 Score=42.22 Aligned_cols=37 Identities=27% Similarity=0.512 Sum_probs=33.3
Q ss_pred cHHhhhhcCCcccceeEECCEEecCCCCHHHHHHHhC
Q 023700 234 IAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASG 270 (278)
Q Consensus 234 ~~~lC~~~~V~GyPTw~inGk~y~G~rsle~La~~sG 270 (278)
..++.++.||+|-||.++||+.|.|..++++|.+...
T Consensus 204 ~~~~a~~~gv~gTPt~~v~~~~~~g~~~~~~l~~~i~ 240 (244)
T COG1651 204 NYKLAQQLGVNGTPTFIVNGKLVPGLPDLDELKAIID 240 (244)
T ss_pred HHHHHHhcCCCcCCeEEECCeeecCCCCHHHHHHHHH
Confidence 5678899999999999999999999999999988753
No 202
>PRK15000 peroxidase; Provisional
Probab=89.21 E-value=0.81 Score=40.68 Aligned_cols=90 Identities=12% Similarity=0.140 Sum_probs=51.5
Q ss_pred HHHHHhhh-cccceEEEcc-CCCHHHHHHHHhhhhH--hhhc--CcEEEccCCCCC------------CC----------
Q 023700 180 ALSLAKHL-HAIGAKMYGA-FWCSHCLEQKQMFGSE--AVKQ--LNYVECFPDGYR------------KG---------- 231 (278)
Q Consensus 180 ~~aLAkhL-~~~gakmYGA-~WCpHC~~qK~lFgke--A~~~--l~yVEC~~dg~n------------~~---------- 231 (278)
..+|.+.+ .+..+++|++ .|||.|..+.+.|.+. .+++ +..|-+..|... .+
T Consensus 25 ~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fplls 104 (200)
T PRK15000 25 KFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVA 104 (200)
T ss_pred eeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEE
Confidence 34565553 3455667777 5999999987776552 1221 222222111000 00
Q ss_pred cccHHhhhhcCCc------ccceeEE---CCE---E----ecCCCCHHHHHHHh
Q 023700 232 TKIAKACSDAKIE------GFPTWVI---NGQ---V----LSGEQDLSDLAKAS 269 (278)
Q Consensus 232 ~k~~~lC~~~~V~------GyPTw~i---nGk---~----y~G~rsle~La~~s 269 (278)
....++++++||. ++|+-++ +|+ . ..-.|+.+|+.++.
T Consensus 105 D~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l 158 (200)
T PRK15000 105 DVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMV 158 (200)
T ss_pred CCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHH
Confidence 0134788889987 7898665 676 1 23458888888765
No 203
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=89.15 E-value=0.41 Score=38.21 Aligned_cols=31 Identities=13% Similarity=0.100 Sum_probs=21.3
Q ss_pred HHHhhhcccceEEEc-cCCCHHHHHHHHhhhh
Q 023700 182 SLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGS 212 (278)
Q Consensus 182 aLAkhL~~~gakmYG-A~WCpHC~~qK~lFgk 212 (278)
.|.+.-.+.-+++|+ +.|||.|..+.+.+.+
T Consensus 16 ~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~ 47 (140)
T cd02971 16 SLSDFKGKWVVLFFYPKDFTPVCTTELCAFRD 47 (140)
T ss_pred ehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHH
Confidence 344433455566666 7899999999776655
No 204
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=89.14 E-value=0.54 Score=38.02 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=26.4
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCC
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPD 226 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~d 226 (278)
+++|+-++|+.|++.+.+|.+. ...+.++|...+
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-CCceEEEecCCC
Confidence 5799999999999999999873 234556666544
No 205
>PRK12559 transcriptional regulator Spx; Provisional
Probab=88.37 E-value=0.6 Score=39.19 Aligned_cols=35 Identities=11% Similarity=0.251 Sum_probs=26.1
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCC
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDG 227 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg 227 (278)
+++|+-++|+.|++.+.+|.+. ...+.++|...+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-gi~~~~~di~~~~ 36 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-QIDYTEKNIVSNS 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-CCCeEEEEeeCCc
Confidence 6799999999999999999873 2334456655443
No 206
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.42 E-value=1.2 Score=41.78 Aligned_cols=68 Identities=16% Similarity=0.342 Sum_probs=50.0
Q ss_pred HHHHHhhhcccceEEEccCCCHHHHHHHHhhhhHhhh------cCcEEEccCCCCCCCcccHHhhhhcCCcc------cc
Q 023700 180 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK------QLNYVECFPDGYRKGTKIAKACSDAKIEG------FP 247 (278)
Q Consensus 180 ~~aLAkhL~~~gakmYGA~WCpHC~~qK~lFgkeA~~------~l~yVEC~~dg~n~~~k~~~lC~~~~V~G------yP 247 (278)
..+|++.=+..=++.|+|-|-|.|++..|.|.+...+ ++..||..+ .++..++++|.- .|
T Consensus 136 deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGr--------fpd~a~kfris~s~~srQLP 207 (265)
T KOG0914|consen 136 DEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGR--------FPDVAAKFRISLSPGSRQLP 207 (265)
T ss_pred HHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeecc--------CcChHHheeeccCcccccCC
Confidence 4566666556667888899999999999999985322 245788754 457788888754 89
Q ss_pred eeEE--CCEE
Q 023700 248 TWVI--NGQV 255 (278)
Q Consensus 248 Tw~i--nGk~ 255 (278)
|.++ +|++
T Consensus 208 T~ilFq~gkE 217 (265)
T KOG0914|consen 208 TYILFQKGKE 217 (265)
T ss_pred eEEEEccchh
Confidence 9887 7763
No 207
>PRK13189 peroxiredoxin; Provisional
Probab=86.46 E-value=2.4 Score=38.36 Aligned_cols=89 Identities=7% Similarity=0.002 Sum_probs=49.5
Q ss_pred HHHHhhhccc-c-eEEEccCCCHHHHHHHHhhhhH--hhhc--Cc--EEEccCCCC------------CCC-------cc
Q 023700 181 LSLAKHLHAI-G-AKMYGAFWCSHCLEQKQMFGSE--AVKQ--LN--YVECFPDGY------------RKG-------TK 233 (278)
Q Consensus 181 ~aLAkhL~~~-g-akmYGA~WCpHC~~qK~lFgke--A~~~--l~--yVEC~~dg~------------n~~-------~k 233 (278)
+.+.+.++.. . +.+|.|.|||.|..+.+.|.+. .+++ +. -|.++..-. +.+ ..
T Consensus 27 ~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~ 106 (222)
T PRK13189 27 IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADD 106 (222)
T ss_pred EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcC
Confidence 4555554432 3 4578899999999887666552 1221 21 222221100 000 01
Q ss_pred cHHhhhhcCCc-------ccceeEE---CCEE-------ecCCCCHHHHHHHh
Q 023700 234 IAKACSDAKIE-------GFPTWVI---NGQV-------LSGEQDLSDLAKAS 269 (278)
Q Consensus 234 ~~~lC~~~~V~-------GyPTw~i---nGk~-------y~G~rsle~La~~s 269 (278)
..++++++|+. ..|+.+| +|+. ....|+.+|+.++.
T Consensus 107 ~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l 159 (222)
T PRK13189 107 RGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLV 159 (222)
T ss_pred ccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHH
Confidence 24778888875 4676554 6762 23667888887765
No 208
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=85.24 E-value=0.56 Score=40.86 Aligned_cols=32 Identities=6% Similarity=-0.012 Sum_probs=23.0
Q ss_pred HHHHhhhcccceEEEc-cCCCHHHHHHHHhhhh
Q 023700 181 LSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGS 212 (278)
Q Consensus 181 ~aLAkhL~~~gakmYG-A~WCpHC~~qK~lFgk 212 (278)
+.++..-.+..+++|+ |.|||.|..+.+.|.+
T Consensus 24 ~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~ 56 (187)
T TIGR03137 24 VTDEDVKGKWSVFFFYPADFTFVCPTELEDLAD 56 (187)
T ss_pred ecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHH
Confidence 4455544455677777 9999999998877654
No 209
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=85.23 E-value=0.75 Score=40.63 Aligned_cols=36 Identities=25% Similarity=0.465 Sum_probs=25.7
Q ss_pred HHhhhhcCCcccceeEECCEEecCCC---------CHHHHHHHhC
Q 023700 235 AKACSDAKIEGFPTWVINGQVLSGEQ---------DLSDLAKASG 270 (278)
Q Consensus 235 ~~lC~~~~V~GyPTw~inGk~y~G~r---------sle~La~~sG 270 (278)
.++.++.||+|.||++|||+.+-+.+ +.|++.+..+
T Consensus 157 ~~~a~~~gI~gtPtfiInGky~v~~~~~~~~~~~~~~~~~~~~i~ 201 (207)
T PRK10954 157 EKAAADLQLRGVPAMFVNGKYMVNNQGMDTSSMDVYVQQYADVVK 201 (207)
T ss_pred HHHHHHcCCCCCCEEEECCEEEEccccccccchhhhHHHHHHHHH
Confidence 34567889999999999999654433 4566665544
No 210
>PRK00611 putative disulfide oxidoreductase; Provisional
Probab=83.18 E-value=4.3 Score=34.85 Aligned_cols=50 Identities=20% Similarity=0.291 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHhhhcCC--CccCCCCCCCccccccchhhhhcCcchhHHHHHHH
Q 023700 68 GIGGVGFLETTYLSYLKLTNS--DAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAY 123 (278)
Q Consensus 68 ~la~iGll~t~yLt~~kl~~~--~~~C~i~~~gC~~Vl~S~ya~vfGiPlsl~Gl~aY 123 (278)
.++++|+..++|-.+...... .+.|. .++|.++ .| +++|++++.+-+++|
T Consensus 70 ~~a~~G~~iA~~hv~lQ~~p~~~~~~Cg--~g~Ca~~---~~-~fl~lsiP~wSl~aF 121 (135)
T PRK00611 70 PLALVGFGIAIYQVCLQEIPGMTLDICG--RVSCSTK---LF-LFGFITMPMASAAAF 121 (135)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccCCCCC--CCCCccc---ch-hcccccHHHHHHHHH
Confidence 568999999999988776433 36786 3589998 44 778999999999997
No 211
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=82.99 E-value=1.9 Score=36.29 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=31.2
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcC
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAK 242 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~ 242 (278)
+++|+-++|+.|++.+.+|.+. ...+.++|...+.... ....++.++.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-~i~~~~~d~~~~~~s~-~eL~~~l~~~~ 50 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH-QLSYKEQNLGKEPLTK-EEILAILTKTE 50 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc-CCCeEEEECCCCCCCH-HHHHHHHHHhC
Confidence 5799999999999999999873 2234456655443222 12444555443
No 212
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.48 E-value=0.98 Score=41.99 Aligned_cols=69 Identities=19% Similarity=0.257 Sum_probs=50.3
Q ss_pred cceEEEccCCCHHHHHHHHhhhhHh--hhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE---EecCCCCH
Q 023700 190 IGAKMYGAFWCSHCLEQKQMFGSEA--VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQDL 262 (278)
Q Consensus 190 ~gakmYGA~WCpHC~~qK~lFgkeA--~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk---~y~G~rsl 262 (278)
..++-|.|.||.-|+++++.|...+ .+++.++.-..+. ..++|....|++-|+.+. +|+ +..|....
T Consensus 19 ~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~------~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~ 92 (227)
T KOG0911|consen 19 LLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEE------FPEISNLIAVEAVPYFVFFFLGEKVDRLSGADPP 92 (227)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhh------hhHHHHHHHHhcCceeeeeecchhhhhhhccCcH
Confidence 3456788999999999999987743 3445566665443 679999999999999887 454 45665544
Q ss_pred HH
Q 023700 263 SD 264 (278)
Q Consensus 263 e~ 264 (278)
+.
T Consensus 93 ~~ 94 (227)
T KOG0911|consen 93 FL 94 (227)
T ss_pred HH
Confidence 43
No 213
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=82.47 E-value=3.9 Score=38.40 Aligned_cols=90 Identities=10% Similarity=0.087 Sum_probs=50.9
Q ss_pred HHHHHhhhcc-cceE-EEccCCCHHHHHHHHhhhhH--hhhc--Cc--EEEccCCC----C-C--------CC-------
Q 023700 180 ALSLAKHLHA-IGAK-MYGAFWCSHCLEQKQMFGSE--AVKQ--LN--YVECFPDG----Y-R--------KG------- 231 (278)
Q Consensus 180 ~~aLAkhL~~-~gak-mYGA~WCpHC~~qK~lFgke--A~~~--l~--yVEC~~dg----~-n--------~~------- 231 (278)
.+.|+++++. ..+. +|-|.|||.|..+.+.|.+. ++++ +. -|.++... + + .+
T Consensus 89 ~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLs 168 (261)
T PTZ00137 89 QFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFS 168 (261)
T ss_pred EEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEE
Confidence 3566666443 3334 44599999999987766552 1221 11 22222100 0 0 00
Q ss_pred cccHHhhhhcCCc-----ccceeEE---CCEE-------ecCCCCHHHHHHHh
Q 023700 232 TKIAKACSDAKIE-----GFPTWVI---NGQV-------LSGEQDLSDLAKAS 269 (278)
Q Consensus 232 ~k~~~lC~~~~V~-----GyPTw~i---nGk~-------y~G~rsle~La~~s 269 (278)
.+..++++++||. ..|+-+| +|+. ....|+.+|+.+..
T Consensus 169 D~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l 221 (261)
T PTZ00137 169 DISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLF 221 (261)
T ss_pred cCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHH
Confidence 0125789999985 4788554 6761 25568999988765
No 214
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=80.39 E-value=2.2 Score=34.96 Aligned_cols=50 Identities=10% Similarity=0.188 Sum_probs=31.2
Q ss_pred ceEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcC
Q 023700 191 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAK 242 (278)
Q Consensus 191 gakmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~ 242 (278)
++++|+-|.|+.|++.+.++.+. ...+.++|-..++... ....++.++.|
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~-gi~~~~~d~~~~p~s~-~eL~~~l~~~g 50 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAA-GHEVEVRDLLTEPWTA-ETLRPFFGDLP 50 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHc-CCCcEEeehhcCCCCH-HHHHHHHHHcC
Confidence 36899999999999999999763 2334455554433221 12445555444
No 215
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=77.07 E-value=1.8 Score=35.83 Aligned_cols=25 Identities=12% Similarity=0.315 Sum_probs=20.8
Q ss_pred ccceEEEccCCCHHHHHHHHhhhhH
Q 023700 189 AIGAKMYGAFWCSHCLEQKQMFGSE 213 (278)
Q Consensus 189 ~~gakmYGA~WCpHC~~qK~lFgke 213 (278)
++-+++|+-|-||||++..+...+.
T Consensus 16 ~~~i~~f~D~~Cp~C~~~~~~~~~~ 40 (178)
T cd03019 16 KPEVIEFFSYGCPHCYNFEPILEAW 40 (178)
T ss_pred CcEEEEEECCCCcchhhhhHHHHHH
Confidence 4457889999999999999887664
No 216
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=76.52 E-value=11 Score=27.26 Aligned_cols=58 Identities=19% Similarity=0.211 Sum_probs=35.9
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCC--cccceeEECCEEe
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKI--EGFPTWVINGQVL 256 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V--~GyPTw~inGk~y 256 (278)
++.|+.+.||.|++.+-++... ...+..++.+.. .+ ..+ -.+.+- ...|+++.+|+.+
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~-gl~~~~~~~~~~--~~---~~~-~~~~~p~~~~vP~l~~~~~~l 60 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALK-GVPYEYVEEDLG--NK---SEL-LLASNPVHKKIPVLLHNGKPI 60 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHc-CCCCEEEEeCcc--cC---CHH-HHHhCCCCCCCCEEEECCEEe
Confidence 4789999999999999888763 222334443322 11 122 233333 5799998887654
No 217
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=76.24 E-value=3.2 Score=38.59 Aligned_cols=33 Identities=33% Similarity=0.500 Sum_probs=27.5
Q ss_pred HhhhhcCCcccceeEEC-CEEecCCCCHHHHHHH
Q 023700 236 KACSDAKIEGFPTWVIN-GQVLSGEQDLSDLAKA 268 (278)
Q Consensus 236 ~lC~~~~V~GyPTw~in-Gk~y~G~rsle~La~~ 268 (278)
+..+++||+|.||++++ |-..+|.|+.+.|.+.
T Consensus 175 ~~A~e~gI~gVP~fv~d~~~~V~Gaq~~~v~~~a 208 (225)
T COG2761 175 AAAQEMGIRGVPTFVFDGKYAVSGAQPYDVLEDA 208 (225)
T ss_pred HHHHHCCCccCceEEEcCcEeecCCCCHHHHHHH
Confidence 46888999999999995 4589999999877643
No 218
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=76.11 E-value=1.5 Score=38.91 Aligned_cols=73 Identities=16% Similarity=0.141 Sum_probs=41.7
Q ss_pred HHHHHhhhcccceEEEccCCCHHHHHHHHhhhhH--hhh--cC--cEEEccCCC-C--CCCcccHHhhh-hcCCccccee
Q 023700 180 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSE--AVK--QL--NYVECFPDG-Y--RKGTKIAKACS-DAKIEGFPTW 249 (278)
Q Consensus 180 ~~aLAkhL~~~gakmYGA~WCpHC~~qK~lFgke--A~~--~l--~yVEC~~dg-~--n~~~k~~~lC~-~~~V~GyPTw 249 (278)
.+.|+++-.++.++.|.|.||+.|++ .+.+.+. .++ .+ --|.|+.-+ . .......+.|+ ++++ .||-+
T Consensus 17 ~v~Ls~~~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~-~Fpv~ 94 (183)
T PRK10606 17 VTTLEKYAGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGV-TFPMF 94 (183)
T ss_pred EEeHHHhCCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCC-CceeE
Confidence 45677766677788899999999974 4444331 122 22 256674200 0 01122456676 5776 48876
Q ss_pred E---ECCE
Q 023700 250 V---INGQ 254 (278)
Q Consensus 250 ~---inGk 254 (278)
. +||+
T Consensus 95 ~k~dvnG~ 102 (183)
T PRK10606 95 SKIEVNGE 102 (183)
T ss_pred EEEccCCC
Confidence 3 2665
No 219
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=73.97 E-value=3.4 Score=33.61 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=18.6
Q ss_pred cceEEEccCCCHHHHHHHHhhhh
Q 023700 190 IGAKMYGAFWCSHCLEQKQMFGS 212 (278)
Q Consensus 190 ~gakmYGA~WCpHC~~qK~lFgk 212 (278)
+-+.+|+-+-||||.++-+.+.+
T Consensus 14 ~~v~~f~d~~Cp~C~~~~~~~~~ 36 (162)
T PF13462_consen 14 ITVTEFFDFQCPHCAKFHEELEK 36 (162)
T ss_dssp EEEEEEE-TTSHHHHHHHHHHHH
T ss_pred eEEEEEECCCCHhHHHHHHHHhh
Confidence 45789999999999999877765
No 220
>PRK03113 putative disulfide oxidoreductase; Provisional
Probab=73.58 E-value=10 Score=32.49 Aligned_cols=56 Identities=18% Similarity=0.266 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcC----CCccCCCCCCCccccccchhhhhcCcchhHHHHHHHh
Q 023700 64 GWCAGIGGVGFLETTYLSYLKLTN----SDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYG 124 (278)
Q Consensus 64 ~~i~~la~iGll~t~yLt~~kl~~----~~~~C~i~~~gC~~Vl~S~ya~vfGiPlsl~Gl~aY~ 124 (278)
+..+.++++|+..++|-.+..... ..+.|. ..+|.++.-.+ ++|++++.+-+++|.
T Consensus 67 ~y~~l~a~~G~~iA~~h~~lq~~p~~~~~~~~Cg--~~~Ca~~~~~~---~g~lsiP~wSl~~F~ 126 (139)
T PRK03113 67 SYSLPISSIGACISLYHYAIQKIPFFSAAAASCG--RVPCTGEYINW---FGFVTIPFLALIAFI 126 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcccccCCCCC--CCChhhhhHHH---hccCcHHHHHHHHHH
Confidence 445568899999999998876432 235776 34798855442 455999999999973
No 221
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=70.99 E-value=2.5 Score=36.78 Aligned_cols=32 Identities=31% Similarity=0.510 Sum_probs=14.7
Q ss_pred HHhhhhcCCcccceeEE-C------CEEecCCCCHHHHH
Q 023700 235 AKACSDAKIEGFPTWVI-N------GQVLSGEQDLSDLA 266 (278)
Q Consensus 235 ~~lC~~~~V~GyPTw~i-n------Gk~y~G~rsle~La 266 (278)
.++.++.+|+++||+++ | |-+++|..+.+.+.
T Consensus 137 ~~la~~m~I~~~Ptlvi~~~~~~~~g~~i~g~~~~~~~~ 175 (176)
T PF13743_consen 137 QQLAREMGITGFPTLVIFNENNEEYGILIEGYYSYEVYE 175 (176)
T ss_dssp HHHHHHTT-SSSSEEEEE---------------------
T ss_pred HHHHHHcCCCCCCEEEEEecccccccccccccccccccC
Confidence 47899999999999998 4 33688888777654
No 222
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=68.97 E-value=5.9 Score=34.81 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=29.7
Q ss_pred HhhhhcCCcccceeEEC---C--EEecCCCCHHHHHHHhC
Q 023700 236 KACSDAKIEGFPTWVIN---G--QVLSGEQDLSDLAKASG 270 (278)
Q Consensus 236 ~lC~~~~V~GyPTw~in---G--k~y~G~rsle~La~~sG 270 (278)
+...+.||.|.||+++| | +.+-|...++.+.++++
T Consensus 170 ~~A~~~Gv~GVP~fvv~~~~~~~e~fwG~Drl~~~~~~l~ 209 (209)
T cd03021 170 DEALKYGAFGLPWIVVTNDKGKTEMFFGSDRFEQVADFLG 209 (209)
T ss_pred HHHHHcCCCCCCEEEEEcCCCCccceecCCcHHHHHHHhC
Confidence 45677899999999993 5 79999999999988764
No 223
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=64.48 E-value=13 Score=35.02 Aligned_cols=76 Identities=14% Similarity=0.072 Sum_probs=49.1
Q ss_pred ceEEEccCCCHHHHHHHHhhhhHhhh--cCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCEE---e-------
Q 023700 191 GAKMYGAFWCSHCLEQKQMFGSEAVK--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQV---L------- 256 (278)
Q Consensus 191 gakmYGA~WCpHC~~qK~lFgkeA~~--~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk~---y------- 256 (278)
.++.+|-+-++.|+.+-..+...|.+ .+.||.+..+. ..++..+.+++.||+++ ||+. +
T Consensus 149 VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~-------~~~~~~f~~~~LPtllvYk~G~l~~~~V~l~~~~ 221 (265)
T PF02114_consen 149 VVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASK-------CPASENFPDKNLPTLLVYKNGDLIGNFVGLTDLL 221 (265)
T ss_dssp EEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECG-------CCTTTTS-TTC-SEEEEEETTEEEEEECTGGGCT
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhc-------cCcccCCcccCCCEEEEEECCEEEEeEEehHHhc
Confidence 46677799999999999999887644 46688775431 23567899999999887 8862 1
Q ss_pred cCCCCHHHHHHHhCCCC
Q 023700 257 SGEQDLSDLAKASGFPE 273 (278)
Q Consensus 257 ~G~rsle~La~~sG~~g 273 (278)
...-+.++|..++--.|
T Consensus 222 g~df~~~dlE~~L~~~G 238 (265)
T PF02114_consen 222 GDDFFTEDLEAFLIEYG 238 (265)
T ss_dssp -TT--HHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHcC
Confidence 22344556666654444
No 224
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=63.99 E-value=3.8 Score=36.17 Aligned_cols=22 Identities=18% Similarity=0.646 Sum_probs=18.2
Q ss_pred ccceEEEccCCCHHHHHHHHhh
Q 023700 189 AIGAKMYGAFWCSHCLEQKQMF 210 (278)
Q Consensus 189 ~~gakmYGA~WCpHC~~qK~lF 210 (278)
+.-+++|+-+-||||.+..+.+
T Consensus 38 ~~~VvEffdy~CphC~~~~~~l 59 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEEVY 59 (207)
T ss_pred CCeEEEEeCCCCccHHHhcccc
Confidence 3448899999999999988754
No 225
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=63.03 E-value=42 Score=23.97 Aligned_cols=61 Identities=13% Similarity=0.039 Sum_probs=38.2
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCC-CCCCcccHHhhhhcCCcccceeEECCEEe
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDG-YRKGTKIAKACSDAKIEGFPTWVINGQVL 256 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg-~n~~~k~~~lC~~~~V~GyPTw~inGk~y 256 (278)
+++|+.+-||.|++.+-++... ...+..++++... .++ ..+.-+..--.-.|+++.+|+.+
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~-~i~~~~~~~~~~~~~~~---~~~~~~~~P~~~vP~l~~~g~~l 63 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEK-GVDYELVPVDLTKGEHK---SPEHLARNPFGQIPALEDGDLKL 63 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHc-CCCcEEEEeCccccccC---CHHHHhhCCCCCCCEEEECCEEE
Confidence 5789889999999999887763 2234455555321 111 23333445556699998777643
No 226
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=63.02 E-value=24 Score=25.30 Aligned_cols=49 Identities=12% Similarity=0.128 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEECCEEecCC
Q 023700 198 FWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGE 259 (278)
Q Consensus 198 ~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inGk~y~G~ 259 (278)
.|||.|++.+-++... ...+..++++... ...-..+|+++.+|+.+.+-
T Consensus 14 s~sp~~~~v~~~L~~~-~i~~~~~~~~~~~------------~~p~g~vP~l~~~g~~l~es 62 (72)
T cd03054 14 SLSPECLKVETYLRMA-GIPYEVVFSSNPW------------RSPTGKLPFLELNGEKIADS 62 (72)
T ss_pred CCCHHHHHHHHHHHhC-CCceEEEecCCcc------------cCCCcccCEEEECCEEEcCH
Confidence 4999999999988762 2233445554321 11233699999998876443
No 227
>PF05279 Asp-B-Hydro_N: Aspartyl beta-hydroxylase N-terminal region; InterPro: IPR007943 This domain is found in members of the junctin, junctate and aspartyl beta-hydroxylase protein families. Junctate is an integral ER/SR membrane calcium binding protein, which comes from an alternatively spliced form of the same gene that generates aspartyl beta-hydroxylase and junctin []. Aspartyl beta-hydroxylase catalyses the post-translational hydroxylation of aspartic acid or asparagine residues contained within epidermal growth factor (EGF) domains of proteins []. This domain is also found in several eukaryotic triadin proteins. Triadin is a ryanodine receptor and calsequestrin binding protein located in junctional sarcoplasmic reticulum of striated muscles [].; GO: 0016020 membrane
Probab=61.32 E-value=8.8 Score=36.08 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=23.8
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHHHhhh
Q 023700 56 STSGFSPYGWCAGIGGVGFLETTYLSYLKL 85 (278)
Q Consensus 56 ~~~~~~~~~~i~~la~iGll~t~yLt~~kl 85 (278)
.++|.|.+.|+++||++|++.+....|-.|
T Consensus 6 ~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (243)
T PF05279_consen 6 GLSGSSFFTWFLVLALLGVWSSVAVVMFDL 35 (243)
T ss_pred CCCCCchHHHHHHHHHHHHHHhhHhhheeh
Confidence 356779999999999999998876665543
No 228
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=58.27 E-value=17 Score=31.99 Aligned_cols=76 Identities=18% Similarity=0.128 Sum_probs=51.0
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEECCEEecCCCCHHHHHHHhCC
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASGF 271 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inGk~y~G~rsle~La~~sG~ 271 (278)
+.+|..|-|+-|++-.+.+... --++.-++-++- .-. ..++.....-++==|-+|||+-++|--.++++++++.-
T Consensus 28 ~~vyksPnCGCC~~w~~~mk~~-Gf~Vk~~~~~d~---~al-K~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll~~ 102 (149)
T COG3019 28 MVVYKSPNCGCCDEWAQHMKAN-GFEVKVVETDDF---LAL-KRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLLAE 102 (149)
T ss_pred EEEEeCCCCccHHHHHHHHHhC-CcEEEEeecCcH---HHH-HHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHHhC
Confidence 6788899999999988877642 113333333210 000 01233334445677899999999999999999999865
Q ss_pred C
Q 023700 272 P 272 (278)
Q Consensus 272 ~ 272 (278)
.
T Consensus 103 ~ 103 (149)
T COG3019 103 K 103 (149)
T ss_pred C
Confidence 4
No 229
>PF14673 DUF4459: Domain of unknown function (DUF4459)
Probab=57.12 E-value=4.1 Score=34.80 Aligned_cols=18 Identities=50% Similarity=0.957 Sum_probs=13.2
Q ss_pred ceEEEccCCCHHHHHHHHhhhhH
Q 023700 191 GAKMYGAFWCSHCLEQKQMFGSE 213 (278)
Q Consensus 191 gakmYGA~WCpHC~~qK~lFgke 213 (278)
--.|||||||- .++|.+|
T Consensus 92 fstmygapwcd-----iqffeqe 109 (159)
T PF14673_consen 92 FSTMYGAPWCD-----IQFFEQE 109 (159)
T ss_pred cccccCCCccc-----eeehhhc
Confidence 35699999995 3567665
No 230
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=55.72 E-value=78 Score=26.05 Aligned_cols=70 Identities=17% Similarity=0.162 Sum_probs=47.0
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhh---hcC--cEEEccCCCCCCCcccHHhhhhcCCc--ccceeEE----CCEE---ec
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAV---KQL--NYVECFPDGYRKGTKIAKACSDAKIE--GFPTWVI----NGQV---LS 257 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~---~~l--~yVEC~~dg~n~~~k~~~lC~~~~V~--GyPTw~i----nGk~---y~ 257 (278)
+.+|.-.=..+..+.+..+.+-|. .++ .++||+. ..++++..+|+ .+|+++| +++. +.
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~--------~~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~ 170 (184)
T PF13848_consen 99 LILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADD--------FPRLLKYFGIDEDDLPALVIFDSNKGKYYYLPE 170 (184)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTT--------THHHHHHTTTTTSSSSEEEEEETTTSEEEE--S
T ss_pred EEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHH--------hHHHHHHcCCCCccCCEEEEEECCCCcEEcCCC
Confidence 344433345677777777766442 223 4677762 35789999999 8999997 3553 27
Q ss_pred CCCCHHHHHHHh
Q 023700 258 GEQDLSDLAKAS 269 (278)
Q Consensus 258 G~rsle~La~~s 269 (278)
|.-+.+.|.+|.
T Consensus 171 ~~~~~~~i~~Fl 182 (184)
T PF13848_consen 171 GEITPESIEKFL 182 (184)
T ss_dssp SCGCHHHHHHHH
T ss_pred CCCCHHHHHHHh
Confidence 899999998875
No 231
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=55.19 E-value=42 Score=29.13 Aligned_cols=58 Identities=7% Similarity=-0.036 Sum_probs=36.9
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEECCEE
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV 255 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inGk~ 255 (278)
++.|+.++||.|++..-++.+. ...+..+..+.+ ++ ..+.=+-+=-.-.|+++.+|..
T Consensus 11 ~~Ly~~~~s~~~~rv~~~L~e~-gl~~e~~~v~~~--~~---~~~~~~~nP~g~VPvL~~~g~~ 68 (211)
T PRK09481 11 MTLFSGPTDIYSHQVRIVLAEK-GVSVEIEQVEKD--NL---PQDLIDLNPYQSVPTLVDRELT 68 (211)
T ss_pred eEEeCCCCChhHHHHHHHHHHC-CCCCEEEeCCcc--cC---CHHHHHhCCCCCCCEEEECCEE
Confidence 7899999999999999877652 233445666543 12 1232222333458999888763
No 232
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=54.24 E-value=8.6 Score=35.52 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=23.6
Q ss_pred HHhhhhcCCcccceeEE--CCEEe---cC--CCCHHHHH
Q 023700 235 AKACSDAKIEGFPTWVI--NGQVL---SG--EQDLSDLA 266 (278)
Q Consensus 235 ~~lC~~~~V~GyPTw~i--nGk~y---~G--~rsle~La 266 (278)
..+|++.++.||||+.+ ||+.| .| -.+++++.
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~ 202 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWL 202 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHH
Confidence 46899999999999998 89854 34 34445544
No 233
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=52.96 E-value=70 Score=23.45 Aligned_cols=61 Identities=3% Similarity=-0.114 Sum_probs=37.0
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEECCEE
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV 255 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inGk~ 255 (278)
+++|+.+.||.|++.+-++.+. ...+..++.+...... +..++-+-.--...|+++.||+.
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~-gl~~e~~~v~~~~~~~--~~~~~~~inP~g~vP~L~~~g~~ 61 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEK-GLRCEEYDVSLPLSEH--NEPWFMRLNPTGEVPVLIHGDNI 61 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHc-CCCCEEEEecCCcCcc--CCHHHHHhCcCCCCCEEEECCEE
Confidence 3689999999999988766552 2234456554321111 12344444455568999888764
No 234
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=52.66 E-value=58 Score=23.17 Aligned_cols=59 Identities=10% Similarity=0.029 Sum_probs=35.1
Q ss_pred eEEEccCCCHHHHHHHHhhhhH-hhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE-CCEE
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSE-AVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-NGQV 255 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgke-A~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i-nGk~ 255 (278)
++.|+.+.||.|.+.+-.+... ....+..++.+.. ++ ..+.=+...-...|+++. ||+.
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~--~~---~~~~~~~~p~~~vP~l~~~~g~~ 61 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPW--SD---DESLLAVNPLGKIPALVLDDGEA 61 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcc--cC---ChHHHHhCCCCCCCEEEECCCCE
Confidence 3789999999999998877651 1112344555432 11 123323345566899987 6643
No 235
>PRK13599 putative peroxiredoxin; Provisional
Probab=52.52 E-value=9.8 Score=34.34 Aligned_cols=21 Identities=14% Similarity=0.034 Sum_probs=17.3
Q ss_pred eEEEccCCCHHHHHHHHhhhh
Q 023700 192 AKMYGAFWCSHCLEQKQMFGS 212 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgk 212 (278)
+.+|.|.|||.|..+.+.|.+
T Consensus 33 L~~~pa~~tpvCt~El~~l~~ 53 (215)
T PRK13599 33 LFSHPADFTPVCTTEFVEFAR 53 (215)
T ss_pred EEEeCCCCCCcCHHHHHHHHH
Confidence 468999999999998766655
No 236
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=51.94 E-value=22 Score=28.79 Aligned_cols=49 Identities=10% Similarity=0.155 Sum_probs=33.3
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcC
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAK 242 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~ 242 (278)
+++|+-+-|+-|++.+..+.+. ...+.++|-..++... +....+.+..|
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~-~i~~~~~di~~~p~t~-~el~~~l~~~g 49 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDK-GIEPEVVKYLKNPPTK-SELEAIFAKLG 49 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHC-CCCeEEEeccCCCcCH-HHHHHHHHHcC
Confidence 4789999999999999999873 3445566665554322 23556666654
No 237
>PRK01749 disulfide bond formation protein B; Provisional
Probab=50.17 E-value=57 Score=28.72 Aligned_cols=51 Identities=14% Similarity=0.210 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHhhhcCCC-ccCCC-------------------CCCCccccccchhhhhcCcchhHHHHHHH
Q 023700 69 IGGVGFLETTYLSYLKLTNSD-AFCPI-------------------GGASCGDVLNSDYAVVFGVPLPFIGMFAY 123 (278)
Q Consensus 69 la~iGll~t~yLt~~kl~~~~-~~C~i-------------------~~~gC~~Vl~S~ya~vfGiPlsl~Gl~aY 123 (278)
.++.|+..++|-.+.+....+ ..|+. ...+|+++. -++||++++-+-+++|
T Consensus 81 ~al~G~~iA~~hv~~q~~~~~~~~C~~~~~~~~~lpl~~~l~~lf~~~~~C~~~~----w~~lGlSmp~wsll~F 151 (176)
T PRK01749 81 SAWKGLQLALEHTDYQLNPSPFNTCDFFVEFPSWLPLDKWLPSVFVASGDCSERQ----WQFLGLEMPQWLVVIF 151 (176)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccCCCcccccccCCHHHHHHHhcCCCCCCCCcc----hhhcccCHHHHHHHHH
Confidence 367899899887655543232 57863 234788765 3579999999888886
No 238
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=47.40 E-value=48 Score=27.32 Aligned_cols=53 Identities=23% Similarity=0.319 Sum_probs=37.6
Q ss_pred HHhhhhHhhh---cCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--C--CE--EecCC-CCHHHHHHHh
Q 023700 207 KQMFGSEAVK---QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--N--GQ--VLSGE-QDLSDLAKAS 269 (278)
Q Consensus 207 K~lFgkeA~~---~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--n--Gk--~y~G~-rsle~La~~s 269 (278)
.+.|.+.|.. ++.+..+.. .+++++++|+. |++++ + ++ .|.|. .+.++|.+|.
T Consensus 9 ~~~f~~~A~~~~~~~~F~~~~~---------~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI 71 (184)
T PF13848_consen 9 FEIFEEAAEKLKGDYQFGVTFN---------EELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFI 71 (184)
T ss_dssp HHHHHHHHHHHTTTSEEEEEE----------HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHH
T ss_pred HHHHHHHHHhCcCCcEEEEEcH---------HHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHH
Confidence 3455554322 355666652 48999999999 99987 3 32 69998 7999999985
No 239
>PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated
Probab=46.63 E-value=3.7 Score=38.28 Aligned_cols=11 Identities=27% Similarity=1.111 Sum_probs=8.9
Q ss_pred ccCCCHHHHHH
Q 023700 196 GAFWCSHCLEQ 206 (278)
Q Consensus 196 GA~WCpHC~~q 206 (278)
+.+|||+||.|
T Consensus 264 ~t~~CP~CQ~~ 274 (274)
T PRK01103 264 STFFCPRCQKR 274 (274)
T ss_pred CcEECcCCCCc
Confidence 46899999864
No 240
>PHA03049 IMV membrane protein; Provisional
Probab=46.52 E-value=19 Score=27.80 Aligned_cols=26 Identities=15% Similarity=0.340 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCC
Q 023700 128 IQKVLGVQLCIASLVVAALSTSYSSIQ 154 (278)
Q Consensus 128 ~~~~~~~~~~v~~~~l~~~~~~y~~~~ 154 (278)
|+.+++..+||+++.++ +.|+|+...
T Consensus 2 I~d~~l~iICVaIi~lI-vYgiYnkk~ 27 (68)
T PHA03049 2 IGDIILVIICVVIIGLI-VYGIYNKKT 27 (68)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHhccc
Confidence 56788889999988776 566888753
No 241
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=46.02 E-value=88 Score=21.86 Aligned_cols=60 Identities=22% Similarity=0.166 Sum_probs=35.6
Q ss_pred EEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCC-CCCCCcccHHhhhhcCCcccceeEECCEEe
Q 023700 193 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPD-GYRKGTKIAKACSDAKIEGFPTWVINGQVL 256 (278)
Q Consensus 193 kmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~d-g~n~~~k~~~lC~~~~V~GyPTw~inGk~y 256 (278)
+.|+-+.|+.|.+.+-++... ...+..++.+.. +.++ ..++-+...-...|+++.+|+.+
T Consensus 2 ~L~~~~~~~~~~~~~~~l~~~-gi~~~~~~~~~~~~~~~---~~~~~~~~p~~~vP~l~~~~~~l 62 (73)
T cd03042 2 ILYSYFRSSASYRVRIALNLK-GLDYEYVPVNLLKGEQL---SPAYRALNPQGLVPTLVIDGLVL 62 (73)
T ss_pred EEecCCCCcchHHHHHHHHHc-CCCCeEEEecCccCCcC---ChHHHHhCCCCCCCEEEECCEEE
Confidence 678778888888887777653 233445555432 1111 12333334556799998887643
No 242
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=45.97 E-value=17 Score=34.28 Aligned_cols=20 Identities=15% Similarity=0.178 Sum_probs=17.0
Q ss_pred cccceEEEccCCCHHHHHHH
Q 023700 188 HAIGAKMYGAFWCSHCLEQK 207 (278)
Q Consensus 188 ~~~gakmYGA~WCpHC~~qK 207 (278)
.+..+.+-||.|||.|-...
T Consensus 58 Gk~~v~~igw~gCP~~A~~s 77 (249)
T PF06053_consen 58 GKPEVIFIGWEGCPYCAAES 77 (249)
T ss_pred CeeEEEEEecccCccchhhH
Confidence 45668899999999998875
No 243
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=45.33 E-value=79 Score=32.20 Aligned_cols=73 Identities=18% Similarity=0.162 Sum_probs=47.3
Q ss_pred hccc-ceEEEccCCCHHHHHHHHhhhhHhh--hcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE---CCE----Ee
Q 023700 187 LHAI-GAKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI---NGQ----VL 256 (278)
Q Consensus 187 L~~~-gakmYGA~WCpHC~~qK~lFgkeA~--~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i---nGk----~y 256 (278)
|+.. -++.|...-|..|.++++++.+-+. .+|.+..-+.. + ..++.++++|+-.|++.| +|+ +|
T Consensus 364 l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~---~---~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f 437 (555)
T TIGR03143 364 LENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRG---E---EPESETLPKITKLPTVALLDDDGNYTGLKF 437 (555)
T ss_pred cCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccc---c---chhhHhhcCCCcCCEEEEEeCCCcccceEE
Confidence 4444 4667878889999999999988431 23333222211 1 347788999999999988 342 66
Q ss_pred cCCCCHHHH
Q 023700 257 SGEQDLSDL 265 (278)
Q Consensus 257 ~G~rsle~L 265 (278)
.|.-.=.|+
T Consensus 438 ~g~P~G~Ef 446 (555)
T TIGR03143 438 HGVPSGHEL 446 (555)
T ss_pred EecCccHhH
Confidence 666543333
No 244
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=45.23 E-value=1.3e+02 Score=22.44 Aligned_cols=69 Identities=13% Similarity=0.028 Sum_probs=46.1
Q ss_pred cccceEEEccCCCHHHHHHHHhhhhHh--h-hcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE--CC----EEecC
Q 023700 188 HAIGAKMYGAFWCSHCLEQKQMFGSEA--V-KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG----QVLSG 258 (278)
Q Consensus 188 ~~~gakmYGA~WCpHC~~qK~lFgkeA--~-~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nG----k~y~G 258 (278)
....++-|+..+++ .....|.+.| . ..+.+..+.. .++.++.+++. |+..+ +. ..|.|
T Consensus 17 ~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~~---------~~~~~~~~~~~-~~i~l~~~~~~~~~~y~g 83 (97)
T cd02981 17 DDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTSD---------KEVAKKLKVKP-GSVVLFKPFEEEPVEYDG 83 (97)
T ss_pred CCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEECh---------HHHHHHcCCCC-CceEEeCCcccCCccCCC
Confidence 34556677799998 4455666543 2 2467777763 36666677765 77666 22 25999
Q ss_pred CCCHHHHHHHh
Q 023700 259 EQDLSDLAKAS 269 (278)
Q Consensus 259 ~rsle~La~~s 269 (278)
..+.++|.+|.
T Consensus 84 ~~~~~~l~~fi 94 (97)
T cd02981 84 EFTEESLVEFI 94 (97)
T ss_pred CCCHHHHHHHH
Confidence 99999999985
No 245
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=44.68 E-value=15 Score=31.02 Aligned_cols=65 Identities=6% Similarity=0.011 Sum_probs=37.1
Q ss_pred HHHHHhhh--cccceEEEccCCCHHHHHH-HHhhhhH--hhhc--Cc-EEEccCCCCCCCcccHHhhhhcCC-cccc
Q 023700 180 ALSLAKHL--HAIGAKMYGAFWCSHCLEQ-KQMFGSE--AVKQ--LN-YVECFPDGYRKGTKIAKACSDAKI-EGFP 247 (278)
Q Consensus 180 ~~aLAkhL--~~~gakmYGA~WCpHC~~q-K~lFgke--A~~~--l~-yVEC~~dg~n~~~k~~~lC~~~~V-~GyP 247 (278)
.+.|...+ +.+-+.+|-+.|||.|..+ .+-|.+. ++++ .. .+-+..|... .+.+.|+++++ ..||
T Consensus 20 ~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~---~~~~~~~~~~~~~~f~ 93 (155)
T cd03013 20 PVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPF---VMKAWGKALGAKDKIR 93 (155)
T ss_pred eeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHH---HHHHHHHhhCCCCcEE
Confidence 35666543 2355678889999999998 7666552 2222 21 2222323211 25667777777 3565
No 246
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=44.37 E-value=7.5 Score=37.91 Aligned_cols=85 Identities=19% Similarity=0.250 Sum_probs=52.7
Q ss_pred HHHHHhhh--cccceEEEccCCCHHHHHHHHhhhhH--hhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE-CCE
Q 023700 180 ALSLAKHL--HAIGAKMYGAFWCSHCLEQKQMFGSE--AVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-NGQ 254 (278)
Q Consensus 180 ~~aLAkhL--~~~gakmYGA~WCpHC~~qK~lFgke--A~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i-nGk 254 (278)
...-+.|. .....+.|||-|||-=+..++-|.-. -++.+..--.+ +-. +.+..-..+++.+.|+... |-.
T Consensus 66 ~l~~~ih~n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~ve-e~~----~lpsv~s~~~~~~~ps~~~~n~t 140 (319)
T KOG2640|consen 66 VLLDAIHGNKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVE-ESQ----ALPSVFSSYGIHSEPSNLMLNQT 140 (319)
T ss_pred HHHHhhccccCCcccccchhcccCcccccCcccchhhhhccccccccHH-HHh----hcccchhccccccCCcceeeccc
Confidence 44556676 33446788899999655555555432 12212211111 111 1356677899999999776 543
Q ss_pred ---EecCCCCHHHHHHHh
Q 023700 255 ---VLSGEQDLSDLAKAS 269 (278)
Q Consensus 255 ---~y~G~rsle~La~~s 269 (278)
+|.|.|+++.|+.+.
T Consensus 141 ~~~~~~~~r~l~sLv~fy 158 (319)
T KOG2640|consen 141 CPASYRGERDLASLVNFY 158 (319)
T ss_pred cchhhcccccHHHHHHHH
Confidence 899999999998763
No 247
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=44.05 E-value=40 Score=24.91 Aligned_cols=55 Identities=9% Similarity=0.094 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEEC-CEEe
Q 023700 198 FWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN-GQVL 256 (278)
Q Consensus 198 ~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~in-Gk~y 256 (278)
+|||+|++.+-++... ...+..++.+...+.. ...++ +...-...|+++.| |+.+
T Consensus 14 ~~Sp~~~kv~~~L~~~-~i~~~~~~~~~~~~~~--~~~~~-~~~p~~~vP~L~~~~~~~l 69 (84)
T cd03038 14 AFSPNVWKTRLALNHK-GLEYKTVPVEFPDIPP--ILGEL-TSGGFYTVPVIVDGSGEVI 69 (84)
T ss_pred CcCChhHHHHHHHHhC-CCCCeEEEecCCCccc--ccccc-cCCCCceeCeEEECCCCEE
Confidence 6999999999988763 2234445554322111 11223 22345678999887 6543
No 248
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=43.22 E-value=5.1 Score=38.23 Aligned_cols=10 Identities=30% Similarity=1.102 Sum_probs=8.0
Q ss_pred ccCCCHHHHH
Q 023700 196 GAFWCSHCLE 205 (278)
Q Consensus 196 GA~WCpHC~~ 205 (278)
+.+|||+||+
T Consensus 264 ~t~~CP~CQ~ 273 (273)
T COG0266 264 STFYCPVCQK 273 (273)
T ss_pred cCEeCCCCCC
Confidence 4689999974
No 249
>COG3917 NahD 2-hydroxychromene-2-carboxylate isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=43.18 E-value=27 Score=32.00 Aligned_cols=34 Identities=21% Similarity=0.404 Sum_probs=29.1
Q ss_pred HHhhhhcCCcccceeEECCEEecCCCCHHHHHHH
Q 023700 235 AKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKA 268 (278)
Q Consensus 235 ~~lC~~~~V~GyPTw~inGk~y~G~rsle~La~~ 268 (278)
.+...+.||-|-|||+++++.|=|-..|.+|...
T Consensus 166 ~~~a~srGvfGaPtfivg~q~fwGqDRL~~lea~ 199 (203)
T COG3917 166 TAEAVSRGVFGAPTFIVGDQLFWGQDRLYQLEAE 199 (203)
T ss_pred HHHHHhcCccCCCeEEECCeeeechhHHHHHHHH
Confidence 4677889999999999999999999888777653
No 250
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=43.15 E-value=3.5 Score=38.59 Aligned_cols=14 Identities=21% Similarity=0.878 Sum_probs=11.3
Q ss_pred ccCCCHHHHHHHHh
Q 023700 196 GAFWCSHCLEQKQM 209 (278)
Q Consensus 196 GA~WCpHC~~qK~l 209 (278)
.++|||+||...|+
T Consensus 254 ~ty~Cp~CQ~~~~~ 267 (269)
T PRK14811 254 GTHFCPQCQPLRPL 267 (269)
T ss_pred CcEECCCCcCCCCC
Confidence 47899999987664
No 251
>PRK13191 putative peroxiredoxin; Provisional
Probab=42.89 E-value=17 Score=32.74 Aligned_cols=20 Identities=10% Similarity=0.036 Sum_probs=17.0
Q ss_pred EEEccCCCHHHHHHHHhhhh
Q 023700 193 KMYGAFWCSHCLEQKQMFGS 212 (278)
Q Consensus 193 kmYGA~WCpHC~~qK~lFgk 212 (278)
.+|.|.|||.|....+.|.+
T Consensus 39 ff~pa~ftpvC~tEl~~l~~ 58 (215)
T PRK13191 39 FSHPGDFTPVCTTEFYSFAK 58 (215)
T ss_pred EEeCCCCCCcCHHHHHHHHH
Confidence 48899999999998777665
No 252
>PRK10853 putative reductase; Provisional
Probab=42.25 E-value=34 Score=28.16 Aligned_cols=51 Identities=12% Similarity=0.212 Sum_probs=32.8
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCc
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIE 244 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~ 244 (278)
+++|+-+-|.-|++.+..+.+. ...+.++|--.++... ....+++++.|++
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~-~i~~~~~d~~k~p~s~-~eL~~~l~~~g~~ 52 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ-GIDYRFHDYRVDGLDS-ELLQGFIDELGWE 52 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc-CCCcEEeehccCCcCH-HHHHHHHHHcCHH
Confidence 6799999999999999999863 2334455544332211 1255666666644
No 253
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=41.70 E-value=77 Score=31.78 Aligned_cols=85 Identities=20% Similarity=0.157 Sum_probs=49.1
Q ss_pred CCCHHHHHHHhhhcccceEEEccCCCHHHHHHHHh-----hhhHhhhc-----Cc--EEEccCCCCCCCcccHHhhhhcC
Q 023700 175 SSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQM-----FGSEAVKQ-----LN--YVECFPDGYRKGTKIAKACSDAK 242 (278)
Q Consensus 175 ~S~~~~~aLAkhL~~~gakmYGA~WCpHC~~qK~l-----FgkeA~~~-----l~--yVEC~~dg~n~~~k~~~lC~~~~ 242 (278)
....+..++-|+ ..-.++|+.|==.+=-.||++ +.+.+.+- +. .|+-.+ ...++++.|
T Consensus 40 neKNfk~~lKky--d~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~K--------d~klAKKLg 109 (383)
T PF01216_consen 40 NEKNFKRALKKY--DVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKK--------DAKLAKKLG 109 (383)
T ss_dssp -TTTHHHHHHH---SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTT--------THHHHHHHT
T ss_pred chhHHHHHHHhh--cEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHH--------HHHHHHhcC
Confidence 344455544444 233566777776666666553 44433332 33 455543 469999999
Q ss_pred CcccceeEE--CCE--EecCCCCHHHHHHHh
Q 023700 243 IEGFPTWVI--NGQ--VLSGEQDLSDLAKAS 269 (278)
Q Consensus 243 V~GyPTw~i--nGk--~y~G~rsle~La~~s 269 (278)
+..-+|..+ +|+ .|.|.++.+.|.+|.
T Consensus 110 v~E~~SiyVfkd~~~IEydG~~saDtLVeFl 140 (383)
T PF01216_consen 110 VEEEGSIYVFKDGEVIEYDGERSADTLVEFL 140 (383)
T ss_dssp --STTEEEEEETTEEEEE-S--SHHHHHHHH
T ss_pred ccccCcEEEEECCcEEEecCccCHHHHHHHH
Confidence 999999776 887 699999999999874
No 254
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=40.01 E-value=86 Score=24.95 Aligned_cols=55 Identities=18% Similarity=0.053 Sum_probs=34.9
Q ss_pred cCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEECCEEec
Q 023700 197 AFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLS 257 (278)
Q Consensus 197 A~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inGk~y~ 257 (278)
-.+||+||+..-.+.+. ...+..++++.+ ++ ..++-+-.=..-.|+++.||..+.
T Consensus 19 ~g~cpf~~rvrl~L~eK-gi~ye~~~vd~~--~~---p~~~~~~nP~g~vPvL~~~~~~i~ 73 (91)
T cd03061 19 IGNCPFCQRLFMVLWLK-GVVFNVTTVDMK--RK---PEDLKDLAPGTQPPFLLYNGEVKT 73 (91)
T ss_pred CCCChhHHHHHHHHHHC-CCceEEEEeCCC--CC---CHHHHHhCCCCCCCEEEECCEEec
Confidence 47899999999877652 122334667654 22 234444445566999888887553
No 255
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=39.32 E-value=44 Score=26.91 Aligned_cols=49 Identities=10% Similarity=0.110 Sum_probs=32.1
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcC
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAK 242 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~ 242 (278)
+++|+-+-|+-|++.+..+.+. ...+.++|...++... +...++.+..+
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~-~i~~~~~di~~~~~t~-~el~~~l~~~~ 49 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEA-GIEPEIVEYLKTPPTA-AELRELLAKLG 49 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHC-CCCeEEEecccCCcCH-HHHHHHHHHcC
Confidence 4789999999999999998863 3345566655443222 22455566555
No 256
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=38.78 E-value=69 Score=25.42 Aligned_cols=60 Identities=7% Similarity=-0.055 Sum_probs=33.6
Q ss_pred HHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhc----CCcccceeEECCEEecCCCCHHHHH
Q 023700 202 HCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDA----KIEGFPTWVINGQVLSGEQDLSDLA 266 (278)
Q Consensus 202 HC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~----~V~GyPTw~inGk~y~G~rsle~La 266 (278)
+|++.+.++.. +.+.|-|++-+. ++.. ..++=+.. +-...|-.+|||+-.-|-.++.+|.
T Consensus 18 ~~~~v~~lL~~---k~I~f~eiDI~~-d~~~-r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l~ 81 (92)
T cd03030 18 RQQEVLGFLEA---KKIEFEEVDISM-NEEN-RQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEAK 81 (92)
T ss_pred HHHHHHHHHHH---CCCceEEEecCC-CHHH-HHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHHH
Confidence 78888999876 356666665432 1111 12222221 3456677888887665555555544
No 257
>COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=38.44 E-value=17 Score=27.75 Aligned_cols=28 Identities=29% Similarity=0.586 Sum_probs=20.3
Q ss_pred CCCHHHHHHHH--hhhhHhhhcCcEEEccCCCC
Q 023700 198 FWCSHCLEQKQ--MFGSEAVKQLNYVECFPDGY 228 (278)
Q Consensus 198 ~WCpHC~~qK~--lFgkeA~~~l~yVEC~~dg~ 228 (278)
.=||.|+.|.- +|.+. .++.|||-.-|.
T Consensus 11 A~CP~C~~~Dtl~mW~En---~ve~vECV~CG~ 40 (66)
T COG3529 11 AVCPACQAQDTLAMWREN---NVEIVECVKCGH 40 (66)
T ss_pred CCCcccchhhHHHHHHhc---CCceEehhhcch
Confidence 35999999964 67663 577788876553
No 258
>PRK04388 disulfide bond formation protein B; Provisional
Probab=38.00 E-value=1.1e+02 Score=26.73 Aligned_cols=52 Identities=19% Similarity=0.411 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHhhhc--CCCccCCC--------------------CCCCccccccchhhhhcCcchhHHHHHHH
Q 023700 68 GIGGVGFLETTYLSYLKLT--NSDAFCPI--------------------GGASCGDVLNSDYAVVFGVPLPFIGMFAY 123 (278)
Q Consensus 68 ~la~iGll~t~yLt~~kl~--~~~~~C~i--------------------~~~gC~~Vl~S~ya~vfGiPlsl~Gl~aY 123 (278)
..+++|+..++|-++.+.. +....|.. +.+.|+++. =++||+.++.+-+++|
T Consensus 78 ~~a~~G~~iA~~h~~lq~~~~~~~~~C~~~~~~~~~~~~~~~~l~~~~~~~~~C~~~~----w~~lGLSmp~wsll~f 151 (172)
T PRK04388 78 IAAGVGMGIAARHVWVQIRPKDMMSSCGPPLSFLSETMGPFEVFRTVLTGTGDCGNID----WRFLGLSMPMWSMVWF 151 (172)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcCcCChhhhhhhccCHHHHHHHHhCCCCCCCCCc----chhhccCHHHHHHHHH
Confidence 5678999999998887654 23457852 123577653 2478988888888775
No 259
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=37.14 E-value=51 Score=30.54 Aligned_cols=75 Identities=12% Similarity=0.120 Sum_probs=50.6
Q ss_pred HHHHHHhhhcccceEEEccCCCHHHHHHHHhhhhHhhhcCc--EEEccCCCCCCCcccHHhhhhcCCcccceeEE--CCE
Q 023700 179 FALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ 254 (278)
Q Consensus 179 ~~~aLAkhL~~~gakmYGA~WCpHC~~qK~lFgkeA~~~l~--yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i--nGk 254 (278)
..+...+.-..+.. -||=+-=-.|+-+...+...|...+. ||-.+.+. -+-++++.+|+-.||..+ ||+
T Consensus 76 df~~~~~kS~kVVc-HFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~------~PFlv~kL~IkVLP~v~l~k~g~ 148 (211)
T KOG1672|consen 76 DFFEEVKKSEKVVC-HFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEK------APFLVTKLNIKVLPTVALFKNGK 148 (211)
T ss_pred HHHHHhhcCceEEE-EEEcCCCcceehHHHHHHHHHHhcccceEEEEeccc------CceeeeeeeeeEeeeEEEEEcCE
Confidence 34444444333333 44478888999999999887755543 55554331 368999999999999776 887
Q ss_pred ---EecCCC
Q 023700 255 ---VLSGEQ 260 (278)
Q Consensus 255 ---~y~G~r 260 (278)
++.|-.
T Consensus 149 ~~D~iVGF~ 157 (211)
T KOG1672|consen 149 TVDYVVGFT 157 (211)
T ss_pred EEEEEeeHh
Confidence 455543
No 260
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=37.08 E-value=41 Score=27.81 Aligned_cols=31 Identities=19% Similarity=0.427 Sum_probs=25.0
Q ss_pred cHHhhhhcCCcccceeEE--CCE---EecCCCCHHH
Q 023700 234 IAKACSDAKIEGFPTWVI--NGQ---VLSGEQDLSD 264 (278)
Q Consensus 234 ~~~lC~~~~V~GyPTw~i--nGk---~y~G~rsle~ 264 (278)
..++..++||..+|++++ +|+ .++|.|+=++
T Consensus 71 e~~L~~r~gv~~~PaLvf~R~g~~lG~i~gi~dW~d 106 (107)
T PF07449_consen 71 ERALAARFGVRRWPALVFFRDGRYLGAIEGIRDWAD 106 (107)
T ss_dssp HHHHHHHHT-TSSSEEEEEETTEEEEEEESSSTHHH
T ss_pred HHHHHHHhCCccCCeEEEEECCEEEEEecCeecccc
Confidence 578999999999999888 887 5788887554
No 261
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=36.86 E-value=5 Score=30.95 Aligned_cols=26 Identities=31% Similarity=0.747 Sum_probs=18.2
Q ss_pred CCHHHHHHHH--hhhhHhhhcCcEEEccCCC
Q 023700 199 WCSHCLEQKQ--MFGSEAVKQLNYVECFPDG 227 (278)
Q Consensus 199 WCpHC~~qK~--lFgkeA~~~l~yVEC~~dg 227 (278)
=||+|+.|.. +|.++ .+.+|||-.=|
T Consensus 10 ~CP~C~~~D~i~~~~e~---~ve~vECV~CG 37 (71)
T PF09526_consen 10 VCPKCQAMDTIMMWREN---GVEYVECVECG 37 (71)
T ss_pred cCCCCcCccEEEEEEeC---CceEEEecCCC
Confidence 5999999985 44443 47788886544
No 262
>PRK02110 disulfide bond formation protein B; Provisional
Probab=36.70 E-value=1.3e+02 Score=26.35 Aligned_cols=52 Identities=21% Similarity=0.354 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCccCCC-C--------------------CCCccccccchhhhhcCcchhHHHHHHH
Q 023700 67 AGIGGVGFLETTYLSYLKLTNSDAFCPI-G--------------------GASCGDVLNSDYAVVFGVPLPFIGMFAY 123 (278)
Q Consensus 67 ~~la~iGll~t~yLt~~kl~~~~~~C~i-~--------------------~~gC~~Vl~S~ya~vfGiPlsl~Gl~aY 123 (278)
.+.++.|+..+.|-++.+... ...|.. . .++|+++ +-++||+.++.+-+++|
T Consensus 78 ~l~a~~G~~ia~~h~~~q~~p-~~~Cg~~~~~~~~~~lpl~~~~~~~f~~~g~C~~~----~w~llGlsmp~wsli~F 150 (169)
T PRK02110 78 VLSALGGIAVAGRHVYIQLNP-GFSCGIDALQPIVDSLPPAKWLPGVFKVDGLCETP----YPPILGLSLPGWALIAF 150 (169)
T ss_pred HHHHHHHHHHHHHHHHHHhCC-CCCCCCCcchHHHHhCCHHHHHHHHhcCCCCccCc----CccccccCHHHHHHHHH
Confidence 345788999999888887643 366751 0 1246554 33478888888877775
No 263
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=36.69 E-value=21 Score=30.01 Aligned_cols=17 Identities=41% Similarity=0.718 Sum_probs=14.8
Q ss_pred HHhhhhcCCcccceeEE
Q 023700 235 AKACSDAKIEGFPTWVI 251 (278)
Q Consensus 235 ~~lC~~~~V~GyPTw~i 251 (278)
.+...+.||.|.||++|
T Consensus 159 ~~~a~~~gv~g~Ptfvv 175 (193)
T cd03025 159 QKLARELGINGFPTLVL 175 (193)
T ss_pred HHHHHHcCCCccCEEEE
Confidence 46677899999999999
No 264
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=35.07 E-value=46 Score=28.16 Aligned_cols=43 Identities=16% Similarity=0.321 Sum_probs=28.7
Q ss_pred cHHhhhhcCCcccceeEECCEEe-cCC-CCHHHHHHHhCCCCCCC
Q 023700 234 IAKACSDAKIEGFPTWVINGQVL-SGE-QDLSDLAKASGFPEMSQ 276 (278)
Q Consensus 234 ~~~lC~~~~V~GyPTw~inGk~y-~G~-rsle~La~~sG~~g~~~ 276 (278)
..++=++.|.+..|-.++||+.+ .|. -+.+||++|+|...+.+
T Consensus 61 V~~~L~~~G~e~LPitlVdGeiv~~G~YPt~eEl~~~~~i~~~~~ 105 (123)
T PF06953_consen 61 VNQLLQTEGAEALPITLVDGEIVKTGRYPTNEELAEWLGISFSEL 105 (123)
T ss_dssp HHHHHHHH-GGG-SEEEETTEEEEESS---HHHHHHHHT--GGGT
T ss_pred HHHHHHHcCcccCCEEEECCEEEEecCCCCHHHHHHHhCCCcccc
Confidence 35667778999999999999942 343 68899999999875544
No 265
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=34.99 E-value=34 Score=26.48 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccC
Q 023700 128 IQKVLGVQLCIASLVVAALSTSYSSI 153 (278)
Q Consensus 128 ~~~~~~~~~~v~~~~l~~~~~~y~~~ 153 (278)
|+.+++..+||+++.++ +.++|+..
T Consensus 2 I~d~iLi~ICVaii~lI-lY~iYnr~ 26 (68)
T PF05961_consen 2 IGDFILIIICVAIIGLI-LYGIYNRK 26 (68)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHhcc
Confidence 57788899999988776 45688764
No 266
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=34.16 E-value=64 Score=32.86 Aligned_cols=72 Identities=15% Similarity=0.214 Sum_probs=51.8
Q ss_pred eEEEccCCCHHHHHHHHhhhhHh--hhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEECCEE-ecCCCCHHHHHHH
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEA--VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV-LSGEQDLSDLAKA 268 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA--~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inGk~-y~G~rsle~La~~ 268 (278)
+.-|..--|-.|-+.-+.+.--+ ..+|..+-.+-. -+++.-++.+|.+.||.++||+. -+|-.++|+|..-
T Consensus 120 FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa------~Fq~Evear~IMaVPtvflnGe~fg~GRmtleeilak 193 (520)
T COG3634 120 FETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGA------LFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAK 193 (520)
T ss_pred EEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecch------hhHhHHHhccceecceEEEcchhhcccceeHHHHHHH
Confidence 55677888998988776554422 234666655422 25677888999999999999996 4888999988654
Q ss_pred h
Q 023700 269 S 269 (278)
Q Consensus 269 s 269 (278)
.
T Consensus 194 i 194 (520)
T COG3634 194 I 194 (520)
T ss_pred h
Confidence 3
No 267
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=33.75 E-value=1.2e+02 Score=25.18 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=36.8
Q ss_pred HHhhhhHh--hh-c-CcEEEccCCCCCCCcccHHhhhhcCCc--ccceeEE-CCE--Ee---cCCCCHHHHHHHhC
Q 023700 207 KQMFGSEA--VK-Q-LNYVECFPDGYRKGTKIAKACSDAKIE--GFPTWVI-NGQ--VL---SGEQDLSDLAKASG 270 (278)
Q Consensus 207 K~lFgkeA--~~-~-l~yVEC~~dg~n~~~k~~~lC~~~~V~--GyPTw~i-nGk--~y---~G~rsle~La~~sG 270 (278)
++.|.+-| ++ + +.||=.+.+. +..+-+.+||. +||++.+ |.+ +| .|.-+.|.|.+|..
T Consensus 43 ~~~l~~vAk~~kgk~i~Fv~vd~~~------~~~~~~~fgl~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~ 112 (130)
T cd02983 43 LEILKSVAEKFKKKPWGWLWTEAGA------QLDLEEALNIGGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLR 112 (130)
T ss_pred HHHHHHHHHHhcCCcEEEEEEeCcc------cHHHHHHcCCCccCCCEEEEEecccCccccccCccCHHHHHHHHH
Confidence 45565533 21 3 4555554332 34678889995 5999887 222 55 58899999998864
No 268
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=33.62 E-value=2.8e+02 Score=23.87 Aligned_cols=80 Identities=16% Similarity=0.147 Sum_probs=44.6
Q ss_pred cccceEEEccCCCHHHHHHHHhhhhHhhh---c--CcEEEccCCCCCCCcccHHhhhhcCC--cccceeEE--CCE----
Q 023700 188 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK---Q--LNYVECFPDGYRKGTKIAKACSDAKI--EGFPTWVI--NGQ---- 254 (278)
Q Consensus 188 ~~~gakmYGA~WCpHC~~qK~lFgkeA~~---~--l~yVEC~~dg~n~~~k~~~lC~~~~V--~GyPTw~i--nGk---- 254 (278)
+..-+||=.|+==+.=|+.-.-|.+++.+ + ++-|-...-|... ..+|.++++| +-||...+ .|.
T Consensus 22 ~~~LVKFD~ayPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~---N~~Laery~i~ke~fPv~~LF~~~~~~pv 98 (126)
T PF07912_consen 22 KYVLVKFDVAYPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKE---NMELAERYKIDKEDFPVIYLFVGDKEEPV 98 (126)
T ss_dssp SEEEEEEEESS--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-C---CHHHHHHTT-SCCC-SEEEEEESSTTSEE
T ss_pred ceEEEEEeccCCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchh---HHHHHHHhCCCcccCCEEEEecCCCCCCc
Confidence 44445554444333334433345533322 2 3566665444333 4699999999 67999887 332
Q ss_pred Ee--cCCCCHHHHHHHhC
Q 023700 255 VL--SGEQDLSDLAKASG 270 (278)
Q Consensus 255 ~y--~G~rsle~La~~sG 270 (278)
+| +|.-+.+.|.+|.-
T Consensus 99 ~~p~~~~~t~~~l~~fvk 116 (126)
T PF07912_consen 99 RYPFDGDVTADNLQRFVK 116 (126)
T ss_dssp EE-TCS-S-HHHHHHHHH
T ss_pred cCCccCCccHHHHHHHHH
Confidence 68 99999999999864
No 269
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=32.96 E-value=1.1e+02 Score=26.74 Aligned_cols=56 Identities=16% Similarity=0.276 Sum_probs=33.1
Q ss_pred EEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeE-ECCEE
Q 023700 193 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWV-INGQV 255 (278)
Q Consensus 193 kmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~-inGk~ 255 (278)
+.|+.+.||.|++.+-++... .-.+..+++..+. . ...-+.......|+++ .||+.
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~-gl~~e~~~~~~~~-~-----~~~~~~np~g~vP~l~~~~g~~ 57 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLK-NIPVEKHVLLNDD-E-----ETPIRMIGAKQVPILQKDDGRA 57 (209)
T ss_pred CeecCCCCChHHHHHHHHHHc-CCCeEEEECCCCc-c-----hhHHHhcCCCCcceEEeeCCeE
Confidence 467788899999999888763 1123345554321 1 1222323345689998 46654
No 270
>PRK13945 formamidopyrimidine-DNA glycosylase; Provisional
Probab=32.16 E-value=9.4 Score=35.87 Aligned_cols=10 Identities=30% Similarity=1.308 Sum_probs=8.1
Q ss_pred ccCCCHHHHH
Q 023700 196 GAFWCSHCLE 205 (278)
Q Consensus 196 GA~WCpHC~~ 205 (278)
.++|||+||.
T Consensus 273 ~t~~CP~CQ~ 282 (282)
T PRK13945 273 STHWCPNCQK 282 (282)
T ss_pred ccEECCCCcC
Confidence 4689999983
No 271
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=31.57 E-value=1.1e+02 Score=21.70 Aligned_cols=59 Identities=10% Similarity=0.019 Sum_probs=34.9
Q ss_pred EEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEECCEEe
Q 023700 193 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVL 256 (278)
Q Consensus 193 kmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inGk~y 256 (278)
+.|+.+.|+.|++.+-++.+. ......++.+.... . ..+.-...--...|+++.+|..+
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~-gi~~e~~~~~~~~~-~---~~~~~~~~p~~~vP~L~~~~~~l 60 (72)
T cd03039 2 KLTYFNIRGRGEPIRLLLADA-GVEYEDVRITYEEW-P---ELDLKPTLPFGQLPVLEIDGKKL 60 (72)
T ss_pred EEEEEcCcchHHHHHHHHHHC-CCCcEEEEeCHHHh-h---hhhhccCCcCCCCCEEEECCEEE
Confidence 567778899999998888763 22344455543210 0 11222224445689998887653
No 272
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional
Probab=30.70 E-value=11 Score=35.27 Aligned_cols=11 Identities=27% Similarity=0.990 Sum_probs=8.5
Q ss_pred EccCCCHHHHH
Q 023700 195 YGAFWCSHCLE 205 (278)
Q Consensus 195 YGA~WCpHC~~ 205 (278)
=.++|||+||+
T Consensus 262 R~t~~CP~CQ~ 272 (272)
T PRK14810 262 RSSHYCPHCQK 272 (272)
T ss_pred CccEECcCCcC
Confidence 34789999984
No 273
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=30.32 E-value=2.1e+02 Score=20.48 Aligned_cols=61 Identities=7% Similarity=-0.112 Sum_probs=37.5
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEECCEE
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV 255 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inGk~ 255 (278)
+++|+.+-++.|++..-++.+. ...+..++++... ...+..+.-+..--...|+++.+|+.
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~-g~~~~~~~v~~~~--~~~~~~~~~~~~p~~~vP~L~~~~~~ 61 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLN-KIPFEECPIDLRK--GEQLTPEFKKINPFGKVPAIVDGDFT 61 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHc-CCCcEEEEecCCC--CCcCCHHHHHhCcCCCCCEEEECCEE
Confidence 3688899999999988777652 2234555665321 11112344444556678999887764
No 274
>PRK15113 glutathione S-transferase; Provisional
Probab=30.02 E-value=2e+02 Score=24.99 Aligned_cols=61 Identities=7% Similarity=-0.020 Sum_probs=36.8
Q ss_pred cceEEEccC--CCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcc-cceeEECCE
Q 023700 190 IGAKMYGAF--WCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEG-FPTWVINGQ 254 (278)
Q Consensus 190 ~gakmYGA~--WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~G-yPTw~inGk 254 (278)
..++.|+.+ .||.|++..-++.+. ...+..++.+... ...+..+.= +.+-.| .|+++.+|.
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~-gi~~e~~~v~~~~--~~~~~~~~~-~~nP~g~VP~L~~~~~ 67 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEK-GLPFELKTVDLDA--GEHLQPTYQ-GYSLTRRVPTLQHDDF 67 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHc-CCCCeEEEeCCCC--ccccCHHHH-hcCCCCCCCEEEECCE
Confidence 347889875 599999988777653 2345566665431 111112333 344444 899998875
No 275
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=29.30 E-value=73 Score=26.65 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=19.2
Q ss_pred eEEEccCCCHHHHHHHHhhhh
Q 023700 192 AKMYGAFWCSHCLEQKQMFGS 212 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgk 212 (278)
+++|+=|-|.-|++.+..+.+
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~ 23 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKA 23 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 679999999999999999876
No 276
>TIGR00577 fpg formamidopyrimidine-DNA glycosylase (fpg). All proteins in the FPG family with known functions are FAPY-DNA glycosylases that function in base excision repair. Homologous to endonuclease VIII (nei). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.32 E-value=14 Score=34.50 Aligned_cols=9 Identities=33% Similarity=1.246 Sum_probs=7.5
Q ss_pred ccCCCHHHH
Q 023700 196 GAFWCSHCL 204 (278)
Q Consensus 196 GA~WCpHC~ 204 (278)
.++|||+||
T Consensus 264 ~t~~CP~CQ 272 (272)
T TIGR00577 264 GTHFCPQCQ 272 (272)
T ss_pred CCEECCCCC
Confidence 468999996
No 277
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=27.12 E-value=1.2e+02 Score=24.45 Aligned_cols=59 Identities=15% Similarity=0.142 Sum_probs=38.0
Q ss_pred HHHHhhhhHh--hh--cCcEEEccCCCCCCCcccHHhhhhcCCcc----cceeEE---CCEEe--cCCC-CHHHHHHHh
Q 023700 205 EQKQMFGSEA--VK--QLNYVECFPDGYRKGTKIAKACSDAKIEG----FPTWVI---NGQVL--SGEQ-DLSDLAKAS 269 (278)
Q Consensus 205 ~qK~lFgkeA--~~--~l~yVEC~~dg~n~~~k~~~lC~~~~V~G----yPTw~i---nGk~y--~G~r-sle~La~~s 269 (278)
..++.|.+-| ++ ++.+|=.+.+. ....-+.+|++. +|++.| ++++| .+.- +.+.|.++.
T Consensus 35 ~~~~~~~~vAk~fk~gki~Fv~~D~~~------~~~~l~~fgl~~~~~~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~ 107 (111)
T cd03073 35 YWRNRVLKVAKDFPDRKLNFAVADKED------FSHELEEFGLDFSGGEKPVVAIRTAKGKKYVMEEEFSDVDALEEFL 107 (111)
T ss_pred HHHHHHHHHHHHCcCCeEEEEEEcHHH------HHHHHHHcCCCcccCCCCEEEEEeCCCCccCCCcccCCHHHHHHHH
Confidence 3455565533 44 56666665442 224667889985 999988 45677 4555 778888875
No 278
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=26.99 E-value=1.5e+02 Score=27.69 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=21.9
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHhhhcC
Q 023700 57 TSGFSPYGWCAGIGGVGFLETTYLSYLKLTN 87 (278)
Q Consensus 57 ~~~~~~~~~i~~la~iGll~t~yLt~~kl~~ 87 (278)
...+.++.|++++.++++ .+||.+..+.+
T Consensus 197 ~~~~g~f~wl~i~~~l~~--~~Y~i~g~~~n 225 (268)
T PF09451_consen 197 SGGWGFFTWLFIILFLFL--AAYLIFGSWYN 225 (268)
T ss_pred cccccHHHHHHHHHHHHH--HHHhhhhhhee
Confidence 445667889999988887 78888776543
No 279
>PRK10445 endonuclease VIII; Provisional
Probab=26.65 E-value=14 Score=34.46 Aligned_cols=10 Identities=30% Similarity=1.232 Sum_probs=8.0
Q ss_pred ccCCCHHHHH
Q 023700 196 GAFWCSHCLE 205 (278)
Q Consensus 196 GA~WCpHC~~ 205 (278)
.++|||+||.
T Consensus 254 ~t~~CP~CQ~ 263 (263)
T PRK10445 254 PFYWCPGCQK 263 (263)
T ss_pred CcEECCCCcC
Confidence 4689999973
No 280
>PRK10026 arsenate reductase; Provisional
Probab=26.49 E-value=1.1e+02 Score=26.43 Aligned_cols=50 Identities=10% Similarity=0.159 Sum_probs=31.2
Q ss_pred ceEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcC
Q 023700 191 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAK 242 (278)
Q Consensus 191 gakmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~ 242 (278)
.+++|+-+-|.-|++.+..+.+. ...+.++|--.+.... ....++.++.+
T Consensus 3 ~i~iY~~p~Cst~RKA~~wL~~~-gi~~~~~d~~~~ppt~-~eL~~~l~~~g 52 (141)
T PRK10026 3 NITIYHNPACGTSRNTLEMIRNS-GTEPTIIHYLETPPTR-DELVKLIADMG 52 (141)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHC-CCCcEEEeeeCCCcCH-HHHHHHHHhCC
Confidence 47899999999999999999763 2334455544333221 12445555544
No 281
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=26.05 E-value=1.2e+02 Score=25.23 Aligned_cols=49 Identities=14% Similarity=0.287 Sum_probs=30.8
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcC
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAK 242 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~ 242 (278)
++.|+-|-|.-|++.+..|.+. .....+++--.++..+ ....+++++.+
T Consensus 3 itiy~~p~C~t~rka~~~L~~~-gi~~~~~~y~~~~~s~-~eL~~~l~~~g 51 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEH-GIEYTFIDYLKTPPSR-EELKKILSKLG 51 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-CCCcEEEEeecCCCCH-HHHHHHHHHcC
Confidence 6799999999999999999873 2233345554443222 11445555544
No 282
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=25.50 E-value=2.3e+02 Score=28.03 Aligned_cols=80 Identities=21% Similarity=0.302 Sum_probs=53.7
Q ss_pred HHHHHHhhhccc--ceEEEccCCCHHHHHHHHhhhhHhhhcCc--EEEccCCCCCCCcccHHhhhhcCCcccceeEECCE
Q 023700 179 FALSLAKHLHAI--GAKMYGAFWCSHCLEQKQMFGSEAVKQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ 254 (278)
Q Consensus 179 ~~~aLAkhL~~~--gakmYGA~WCpHC~~qK~lFgkeA~~~l~--yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inGk 254 (278)
-+...|.||..+ .++.|-=--||.|-+.+.++.- ..|+ .||+++-- ++ +.+. -..+-.|-+.++|+
T Consensus 76 hae~~~~~ld~s~L~l~LyQyetCPFCcKVrAFLDy---hgisY~VVEVnpV~-r~---eIk~---SsykKVPil~~~Ge 145 (370)
T KOG3029|consen 76 HAETKATRLDGSPLDLVLYQYETCPFCCKVRAFLDY---HGISYAVVEVNPVL-RQ---EIKW---SSYKKVPILLIRGE 145 (370)
T ss_pred HHHHHHhhcCCCCceEEEEeeccCchHHHHHHHHhh---cCCceEEEEecchh-hh---hccc---cccccccEEEeccc
Confidence 345667777776 7888888999999999988764 3444 58887642 11 1222 25677899999887
Q ss_pred E---------------ecCCCCHHHHHHH
Q 023700 255 V---------------LSGEQDLSDLAKA 268 (278)
Q Consensus 255 ~---------------y~G~rsle~La~~ 268 (278)
. -.-.|+++||.++
T Consensus 146 qm~dSsvIIs~laTyLq~~~q~l~eiiq~ 174 (370)
T KOG3029|consen 146 QMVDSSVIISLLATYLQDKRQDLGEIIQM 174 (370)
T ss_pred eechhHHHHHHHHHHhccCCCCHHHHHHh
Confidence 2 1345677777765
No 283
>PF10939 DUF2631: Protein of unknown function (DUF2631) ; InterPro: IPR024341 This entry represents a bacterial protein of unknown function.
Probab=25.42 E-value=1.2e+02 Score=23.40 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=13.4
Q ss_pred CCCCCCCCCCCCCCCChhh
Q 023700 46 SDLRTTPSPSSTSGFSPYG 64 (278)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~ 64 (278)
+.+...+-||..||++...
T Consensus 10 ~gVd~~d~PSa~WGWhg~~ 28 (65)
T PF10939_consen 10 TGVDPADVPSAAWGWHGEN 28 (65)
T ss_pred CCCCcccCCCccccccCCC
Confidence 3355567789999988743
No 284
>PRK10387 glutaredoxin 2; Provisional
Probab=25.18 E-value=1.8e+02 Score=24.64 Aligned_cols=56 Identities=16% Similarity=0.282 Sum_probs=33.0
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE-CCE
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-NGQ 254 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i-nGk 254 (278)
++.|+...||+|++.+-++... ...+..++.+... + ... -.-......|+++. +|.
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~-gi~y~~~~~~~~~-~----~~~-~~~~p~~~VPvL~~~~g~ 57 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLK-NIPVELIVLANDD-E----ATP-IRMIGQKQVPILQKDDGS 57 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHc-CCCeEEEEcCCCc-h----hhH-HHhcCCcccceEEecCCe
Confidence 4688889999999999888763 1223345543221 1 111 22233456999965 664
No 285
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=24.54 E-value=1.5e+02 Score=23.14 Aligned_cols=69 Identities=14% Similarity=0.164 Sum_probs=46.4
Q ss_pred cCCCHHHHHHHHhhhhHh-hhcCcEEEccCCCCCCCcccHHhhhhcCCcc--cce-eE-E-CCE-EecCCCCHHHHHHHh
Q 023700 197 AFWCSHCLEQKQMFGSEA-VKQLNYVECFPDGYRKGTKIAKACSDAKIEG--FPT-WV-I-NGQ-VLSGEQDLSDLAKAS 269 (278)
Q Consensus 197 A~WCpHC~~qK~lFgkeA-~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~G--yPT-w~-i-nGk-~y~G~rsle~La~~s 269 (278)
=-+||=|......+.+.. ...+.+++...+. ..++.++.++.. .-+ +. + +|+ .|.|..-..++.+.+
T Consensus 4 Dg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~G~~A~~~l~~~~ 77 (114)
T PF04134_consen 4 DGDCPLCRREVRFLRRRDRGGRLRFVDIQSEP------DQALLASYGISPEDADSRLHLIDDGERVYRGSDAVLRLLRRL 77 (114)
T ss_pred CCCCHhHHHHHHHHHhcCCCCCEEEEECCChh------hhhHHHhcCcCHHHHcCeeEEecCCCEEEEcHHHHHHHHHHc
Confidence 578999999999887743 3568899984321 124455555542 333 22 3 887 999999888887776
Q ss_pred CC
Q 023700 270 GF 271 (278)
Q Consensus 270 G~ 271 (278)
+.
T Consensus 78 ~~ 79 (114)
T PF04134_consen 78 PG 79 (114)
T ss_pred Cc
Confidence 54
No 286
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=23.94 E-value=1.8e+02 Score=22.07 Aligned_cols=30 Identities=10% Similarity=0.070 Sum_probs=17.7
Q ss_pred CCCCCCChhhHHHHH-HHHHHHHHHHHHHhh
Q 023700 55 SSTSGFSPYGWCAGI-GGVGFLETTYLSYLK 84 (278)
Q Consensus 55 ~~~~~~~~~~~i~~l-a~iGll~t~yLt~~k 84 (278)
+..|-.++...++++ +++|++.+.-+.+.+
T Consensus 50 P~~P~~P~~~lil~l~~~~Gl~lgi~~~~~r 80 (82)
T PF13807_consen 50 PDKPVSPKRALILALGLFLGLILGIGLAFLR 80 (82)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333445555555544 478888877776654
No 287
>TIGR02443 conserved hypothetical metal-binding protein. Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.
Probab=23.48 E-value=11 Score=28.31 Aligned_cols=28 Identities=32% Similarity=0.718 Sum_probs=19.2
Q ss_pred CCCHHHHHHHH--hhhhHhhhcCcEEEccCCCC
Q 023700 198 FWCSHCLEQKQ--MFGSEAVKQLNYVECFPDGY 228 (278)
Q Consensus 198 ~WCpHC~~qK~--lFgkeA~~~l~yVEC~~dg~ 228 (278)
-=||.|+.|.- +|.+ ..+.+|||..=|+
T Consensus 10 A~CP~C~~~Dtl~~~~e---~~~e~vECv~Cg~ 39 (59)
T TIGR02443 10 AVCPACSAQDTLAMWKE---NNIELVECVECGY 39 (59)
T ss_pred ccCCCCcCccEEEEEEe---CCceEEEeccCCC
Confidence 35999999975 4543 2567888875543
No 288
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=22.82 E-value=2.8e+02 Score=19.91 Aligned_cols=60 Identities=13% Similarity=0.079 Sum_probs=36.0
Q ss_pred EEEccCCCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEE-CCEEe
Q 023700 193 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-NGQVL 256 (278)
Q Consensus 193 kmYGA~WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~i-nGk~y 256 (278)
+.|+.+-||.|.+.+-++... ...+..++.+....++ ..+.=+..-..-.|+++. ||..+
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~-gi~~~~~~v~~~~~~~---~~~~~~~nP~~~vP~L~~~~g~~l 62 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYN-GLDVEIVDFQPGKENK---TPEFLKKFPLGKVPAFEGADGFCL 62 (75)
T ss_pred eEecCCCCccHHHHHHHHHHc-CCceEEEecccccccC---CHHHHHhCCCCCCCEEEcCCCCEE
Confidence 678888899999988777652 2334455555421122 233333344566999998 46543
No 289
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=22.05 E-value=1.4e+02 Score=21.51 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=21.6
Q ss_pred HHhhhhcCCcc--cceeEECCEEecCCCCHHHH
Q 023700 235 AKACSDAKIEG--FPTWVINGQVLSGEQDLSDL 265 (278)
Q Consensus 235 ~~lC~~~~V~G--yPTw~inGk~y~G~rsle~L 265 (278)
...|++.++.. -=.+.+||+++.+.++++++
T Consensus 28 ~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~ 60 (72)
T PF11976_consen 28 EKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDL 60 (72)
T ss_dssp HHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHH
T ss_pred HHHHHhhCCCccceEEEEECCEEcCCCCCHHHC
Confidence 45566666654 23366699999999999886
No 290
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=21.38 E-value=3.2e+02 Score=19.64 Aligned_cols=47 Identities=13% Similarity=0.116 Sum_probs=28.6
Q ss_pred CCHHHHHHHHhhhhHhhhcCcEEEccCCCCCCCcccHHhhhhcCCcccceeEECCEEecC
Q 023700 199 WCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSG 258 (278)
Q Consensus 199 WCpHC~~qK~lFgkeA~~~l~yVEC~~dg~n~~~k~~~lC~~~~V~GyPTw~inGk~y~G 258 (278)
+||.|.+.+-.+... ...+..++.+.. + ...-...|+++.||+.+..
T Consensus 16 ~sp~~~~v~~~L~~~-gi~~~~~~~~~~---------~---~~p~g~vPvl~~~g~~l~e 62 (75)
T cd03080 16 LSPFCLKVETFLRMA-GIPYENKFGGLA---------K---RSPKGKLPFIELNGEKIAD 62 (75)
T ss_pred CCHHHHHHHHHHHHC-CCCcEEeecCcc---------c---CCCCCCCCEEEECCEEEcC
Confidence 789999998877652 223444554321 1 1234557999988876543
No 291
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=21.20 E-value=1.2e+02 Score=25.53 Aligned_cols=71 Identities=13% Similarity=0.242 Sum_probs=42.4
Q ss_pred eEEEccCCCHHHHHHHHhhhhHhh--h---cCcEEEccCCCCCCCcccHHhhhhcCCc----ccceeE--E-CCE---Ee
Q 023700 192 AKMYGAFWCSHCLEQKQMFGSEAV--K---QLNYVECFPDGYRKGTKIAKACSDAKIE----GFPTWV--I-NGQ---VL 256 (278)
Q Consensus 192 akmYGA~WCpHC~~qK~lFgkeA~--~---~l~yVEC~~dg~n~~~k~~~lC~~~~V~----GyPTw~--i-nGk---~y 256 (278)
.+.| +--=-.=..+-.+|.+.|. + .+.+|||.... ...||++.+|. -=|.-. + ||. .|
T Consensus 23 LvLy-~ks~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e------~kKLCKKlKv~~~~kp~~~~LkHYKdG~fHkdY 95 (112)
T cd03067 23 LVLY-SKSAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSE------SRKLCKKLKVDPSSKPKPVELKHYKDGDFHTEY 95 (112)
T ss_pred EEEE-ecchhhHHHHHHHHHHHHHHhcCceeEEEEecCChH------HHHHHHHHccCCCCCCCcchhhcccCCCccccc
Confidence 3445 3333333334446766331 1 26799997421 36999999998 344322 2 775 68
Q ss_pred cCCCCHHHHHHHh
Q 023700 257 SGEQDLSDLAKAS 269 (278)
Q Consensus 257 ~G~rsle~La~~s 269 (278)
....+...+..|+
T Consensus 96 dR~~t~kSmv~Fl 108 (112)
T cd03067 96 NRQLTFKSMVAFL 108 (112)
T ss_pred cchhhHHHHHHHh
Confidence 8888887777765
No 292
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=21.07 E-value=44 Score=25.54 Aligned_cols=22 Identities=27% Similarity=0.744 Sum_probs=17.5
Q ss_pred hhhcCCcccce----eEECCEEecCC
Q 023700 238 CSDAKIEGFPT----WVINGQVLSGE 259 (278)
Q Consensus 238 C~~~~V~GyPT----w~inGk~y~G~ 259 (278)
|.++.|.|.|. |..||+.+...
T Consensus 2 ~i~~~v~G~P~Pti~W~kng~~l~~~ 27 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEGAILNES 27 (79)
T ss_pred eEEEEEeEeCCCceEEEECCEECCCC
Confidence 67788999987 88899977543
Done!