Query 023701
Match_columns 278
No_of_seqs 151 out of 2272
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 11:20:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023701.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023701hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jeo_A Uridine-cytidine kinase 99.9 4.4E-26 1.5E-30 194.6 19.1 215 21-252 13-236 (245)
2 3asz_A Uridine kinase; cytidin 99.9 4.5E-26 1.5E-30 189.8 17.1 207 45-253 3-209 (211)
3 1uj2_A Uridine-cytidine kinase 99.9 6.1E-25 2.1E-29 188.3 16.4 207 44-251 18-233 (252)
4 3tqc_A Pantothenate kinase; bi 99.9 2.9E-25 9.8E-30 195.8 12.7 188 45-234 89-311 (321)
5 3aez_A Pantothenate kinase; tr 99.9 6.6E-24 2.3E-28 187.0 12.9 188 45-234 87-302 (312)
6 1sq5_A Pantothenate kinase; P- 99.9 1.2E-24 4E-29 191.8 7.6 187 46-234 78-299 (308)
7 1a7j_A Phosphoribulokinase; tr 99.9 3E-23 1E-27 181.2 8.9 185 47-232 4-216 (290)
8 3c8u_A Fructokinase; YP_612366 99.9 7.3E-22 2.5E-26 164.3 11.6 181 45-230 19-207 (208)
9 1odf_A YGR205W, hypothetical 3 99.8 3E-21 1E-25 168.3 8.5 187 44-232 27-277 (290)
10 2ga8_A Hypothetical 39.9 kDa p 99.8 2.4E-20 8.2E-25 165.2 7.4 151 77-231 156-351 (359)
11 1rz3_A Hypothetical protein rb 99.8 1.9E-20 6.4E-25 154.9 4.8 174 45-232 19-201 (201)
12 2qt1_A Nicotinamide riboside k 99.8 1E-18 3.5E-23 144.8 7.9 182 44-249 17-203 (207)
13 2grj_A Dephospho-COA kinase; T 99.7 2.2E-18 7.7E-23 141.4 7.9 157 45-234 9-173 (192)
14 4i1u_A Dephospho-COA kinase; s 99.7 5.5E-18 1.9E-22 140.3 7.7 163 46-234 7-188 (210)
15 1jjv_A Dephospho-COA kinase; P 99.7 3.5E-17 1.2E-21 135.4 6.3 176 48-249 2-194 (206)
16 2f6r_A COA synthase, bifunctio 99.7 9.8E-17 3.3E-21 139.3 8.8 180 45-247 72-268 (281)
17 3vaa_A Shikimate kinase, SK; s 99.6 1.8E-16 6.2E-21 130.6 6.4 175 21-249 13-197 (199)
18 2if2_A Dephospho-COA kinase; a 99.6 3.4E-16 1.2E-20 129.1 7.7 173 49-251 2-191 (204)
19 4e22_A Cytidylate kinase; P-lo 99.6 3.7E-15 1.3E-19 127.3 13.0 100 147-248 143-245 (252)
20 1vht_A Dephospho-COA kinase; s 99.6 9E-16 3.1E-20 128.0 8.2 177 47-249 3-196 (218)
21 3fvq_A Fe(3+) IONS import ATP- 99.6 1E-15 3.5E-20 136.5 8.2 161 8-183 3-203 (359)
22 1uf9_A TT1252 protein; P-loop, 99.6 4.5E-15 1.5E-19 121.9 8.6 174 45-250 5-192 (203)
23 3rlf_A Maltose/maltodextrin im 99.6 1.5E-15 5.2E-20 136.3 6.0 160 9-183 3-198 (381)
24 3nwj_A ATSK2; P loop, shikimat 99.5 1.9E-15 6.5E-20 128.8 4.5 187 9-252 17-241 (250)
25 2yyz_A Sugar ABC transporter, 99.5 8.4E-15 2.9E-19 130.9 7.9 159 9-182 3-197 (359)
26 3t61_A Gluconokinase; PSI-biol 99.5 8.5E-14 2.9E-18 114.6 12.9 158 46-246 16-178 (202)
27 3r20_A Cytidylate kinase; stru 99.5 2.9E-15 9.8E-20 126.1 4.0 191 46-251 7-227 (233)
28 3tui_C Methionine import ATP-b 99.5 8.5E-15 2.9E-19 130.7 7.1 143 6-164 21-197 (366)
29 2it1_A 362AA long hypothetical 99.5 1.1E-14 3.6E-19 130.3 7.7 159 9-182 3-197 (362)
30 3lw7_A Adenylate kinase relate 99.5 4.3E-15 1.5E-19 118.8 4.5 171 49-247 2-176 (179)
31 1cke_A CK, MSSA, protein (cyti 99.5 3.6E-14 1.2E-18 118.7 10.0 97 148-247 122-222 (227)
32 1v43_A Sugar-binding transport 99.5 1.9E-14 6.6E-19 129.1 8.5 159 9-182 11-205 (372)
33 2pcj_A ABC transporter, lipopr 99.5 3.2E-15 1.1E-19 125.6 3.2 141 8-164 3-174 (224)
34 3d31_A Sulfate/molybdate ABC t 99.5 1.1E-14 3.8E-19 129.6 6.8 156 9-182 1-191 (348)
35 4g1u_C Hemin import ATP-bindin 99.5 1.4E-14 4.9E-19 124.6 7.2 139 9-164 11-181 (266)
36 2olj_A Amino acid ABC transpor 99.5 1.3E-14 4.4E-19 124.6 6.8 145 6-165 21-194 (263)
37 1vpl_A ABC transporter, ATP-bi 99.5 7.8E-15 2.7E-19 125.5 5.0 142 9-165 15-181 (256)
38 2nq2_C Hypothetical ABC transp 99.5 1.7E-14 5.8E-19 123.3 7.0 143 8-165 3-163 (253)
39 3ake_A Cytidylate kinase; CMP 99.5 4.1E-14 1.4E-18 116.6 8.5 174 50-248 4-205 (208)
40 1oxx_K GLCV, glucose, ABC tran 99.5 1.8E-14 6.3E-19 128.6 6.7 159 9-182 3-204 (353)
41 3gfo_A Cobalt import ATP-bindi 99.5 5.1E-15 1.7E-19 127.9 2.9 141 9-164 7-177 (275)
42 3tif_A Uncharacterized ABC tra 99.5 6.9E-15 2.4E-19 124.4 3.4 141 9-164 1-179 (235)
43 1z47_A CYSA, putative ABC-tran 99.5 1.5E-14 5E-19 129.0 5.7 159 9-182 14-209 (355)
44 1ji0_A ABC transporter; ATP bi 99.5 4.3E-14 1.5E-18 119.8 8.2 141 9-165 6-174 (240)
45 4eun_A Thermoresistant glucoki 99.5 1.5E-13 5.1E-18 113.1 11.2 164 44-252 25-194 (200)
46 1q3t_A Cytidylate kinase; nucl 99.5 4.1E-14 1.4E-18 119.5 6.8 189 44-245 12-232 (236)
47 2yz2_A Putative ABC transporte 99.5 6.3E-14 2.1E-18 120.6 8.0 140 9-164 2-172 (266)
48 1g6h_A High-affinity branched- 99.5 2.2E-14 7.4E-19 122.9 4.2 141 9-164 7-187 (257)
49 1sgw_A Putative ABC transporte 99.5 3.3E-14 1.1E-18 118.4 5.0 138 9-164 10-167 (214)
50 1g29_1 MALK, maltose transport 99.5 6.3E-14 2.2E-18 125.9 6.6 159 9-182 3-203 (372)
51 1ukz_A Uridylate kinase; trans 99.5 5.1E-14 1.7E-18 115.9 5.6 40 44-86 11-50 (203)
52 1y63_A LMAJ004144AAA protein; 99.5 2.6E-13 8.9E-18 110.2 9.6 40 44-86 6-46 (184)
53 1b0u_A Histidine permease; ABC 99.4 6E-14 2E-18 120.5 5.6 141 9-164 6-187 (262)
54 2onk_A Molybdate/tungstate ABC 99.4 3.1E-14 1E-18 120.7 3.7 137 9-164 1-160 (240)
55 2bwj_A Adenylate kinase 5; pho 99.4 8.7E-14 3E-18 113.8 6.1 122 45-191 9-138 (199)
56 1tev_A UMP-CMP kinase; ploop, 99.4 1.9E-13 6.6E-18 111.2 7.5 37 47-86 2-38 (196)
57 2iyv_A Shikimate kinase, SK; t 99.4 2.7E-14 9.1E-19 115.8 2.3 159 48-251 2-168 (184)
58 2h92_A Cytidylate kinase; ross 99.4 5E-14 1.7E-18 117.3 3.7 184 48-249 3-215 (219)
59 1knq_A Gluconate kinase; ALFA/ 99.4 4.3E-12 1.5E-16 101.8 14.7 160 45-249 5-171 (175)
60 1mv5_A LMRA, multidrug resista 99.4 1.5E-13 5.1E-18 116.8 5.0 136 9-164 1-173 (243)
61 1qf9_A UMP/CMP kinase, protein 99.4 2E-13 6.7E-18 111.0 5.5 38 46-86 4-41 (194)
62 3trf_A Shikimate kinase, SK; a 99.4 3E-13 1E-17 109.6 5.9 160 47-251 4-174 (185)
63 2ihy_A ABC transporter, ATP-bi 99.4 1E-13 3.6E-18 120.0 2.9 141 9-164 21-195 (279)
64 2cbz_A Multidrug resistance-as 99.4 8.5E-14 2.9E-18 117.8 2.1 137 9-164 3-161 (237)
65 2pjz_A Hypothetical protein ST 99.4 3.2E-13 1.1E-17 115.8 5.6 151 9-181 1-187 (263)
66 2ixe_A Antigen peptide transpo 99.4 9.9E-14 3.4E-18 119.7 2.3 139 6-164 13-190 (271)
67 2c95_A Adenylate kinase 1; tra 99.4 4.1E-13 1.4E-17 109.5 5.7 120 46-190 7-134 (196)
68 2pze_A Cystic fibrosis transme 99.4 2.1E-13 7.3E-18 114.7 4.0 138 6-165 3-165 (229)
69 3kb2_A SPBC2 prophage-derived 99.4 3.5E-12 1.2E-16 101.6 10.8 35 49-86 2-36 (173)
70 2ff7_A Alpha-hemolysin translo 99.4 1.7E-13 5.8E-18 116.6 3.2 133 11-164 9-179 (247)
71 2pt5_A Shikimate kinase, SK; a 99.4 4E-13 1.4E-17 107.0 5.2 161 49-253 1-165 (168)
72 2d2e_A SUFC protein; ABC-ATPas 99.4 2.4E-13 8.2E-18 115.9 3.7 140 9-164 3-177 (250)
73 2cdn_A Adenylate kinase; phosp 99.4 4.9E-13 1.7E-17 109.9 5.2 40 44-86 16-55 (201)
74 1zuh_A Shikimate kinase; alpha 99.3 4.9E-13 1.7E-17 106.7 4.7 38 46-86 5-42 (168)
75 4eaq_A DTMP kinase, thymidylat 99.3 2E-11 6.8E-16 102.6 14.8 182 45-249 23-226 (229)
76 2rhm_A Putative kinase; P-loop 99.3 6.6E-13 2.2E-17 108.0 5.1 171 46-251 3-188 (193)
77 1kag_A SKI, shikimate kinase I 99.3 4.8E-13 1.7E-17 107.0 4.2 37 47-86 3-39 (173)
78 3nh6_A ATP-binding cassette SU 99.3 2.1E-13 7.1E-18 119.4 2.1 134 10-164 54-224 (306)
79 2pbr_A DTMP kinase, thymidylat 99.3 3.7E-12 1.3E-16 103.5 8.8 36 49-84 1-36 (195)
80 2qi9_C Vitamin B12 import ATP- 99.3 4.9E-13 1.7E-17 113.8 3.4 134 9-164 4-167 (249)
81 1e6c_A Shikimate kinase; phosp 99.3 1.1E-12 3.8E-17 104.8 4.8 36 48-86 2-37 (173)
82 3gd7_A Fusion complex of cysti 99.3 6.6E-13 2.2E-17 119.9 3.8 142 9-166 19-191 (390)
83 1via_A Shikimate kinase; struc 99.3 9E-13 3.1E-17 105.9 4.2 160 49-251 5-166 (175)
84 2ghi_A Transport protein; mult 99.3 6.7E-13 2.3E-17 113.8 3.6 136 9-165 17-190 (260)
85 3tr0_A Guanylate kinase, GMP k 99.3 6E-13 2.1E-17 109.4 3.2 179 44-246 3-185 (205)
86 2zu0_C Probable ATP-dependent 99.3 9.4E-13 3.2E-17 113.3 3.2 140 9-164 20-198 (267)
87 2qor_A Guanylate kinase; phosp 99.3 6.7E-12 2.3E-16 103.4 8.0 182 45-249 9-198 (204)
88 3dl0_A Adenylate kinase; phosp 99.3 4.5E-12 1.6E-16 105.2 6.4 35 50-87 2-36 (216)
89 3tlx_A Adenylate kinase 2; str 99.3 9.5E-12 3.2E-16 105.5 8.5 39 45-86 26-64 (243)
90 3fdi_A Uncharacterized protein 99.3 8.2E-12 2.8E-16 102.9 7.5 31 48-81 6-36 (201)
91 2wwf_A Thymidilate kinase, put 99.3 6.5E-12 2.2E-16 103.6 6.8 29 45-73 7-35 (212)
92 1qhx_A CPT, protein (chloramph 99.3 1.8E-11 6.1E-16 98.3 9.0 39 47-86 2-40 (178)
93 3b5x_A Lipid A export ATP-bind 99.2 4.1E-12 1.4E-16 120.9 5.8 136 9-164 341-514 (582)
94 3fb4_A Adenylate kinase; psych 99.2 3.2E-12 1.1E-16 106.0 4.2 35 50-87 2-36 (216)
95 2z0h_A DTMP kinase, thymidylat 99.2 1.7E-11 5.9E-16 99.8 8.4 34 49-82 1-34 (197)
96 3hdt_A Putative kinase; struct 99.2 5.4E-12 1.8E-16 105.6 4.9 193 44-251 10-218 (223)
97 3uie_A Adenylyl-sulfate kinase 99.2 9.2E-11 3.1E-15 96.2 11.9 43 44-86 21-65 (200)
98 3iij_A Coilin-interacting nucl 99.2 1.5E-11 5.1E-16 99.1 6.9 39 45-86 8-46 (180)
99 2plr_A DTMP kinase, probable t 99.2 1.8E-10 6.2E-15 94.7 13.4 30 47-76 3-32 (213)
100 3cm0_A Adenylate kinase; ATP-b 99.2 1.8E-11 6.3E-16 98.9 6.9 38 46-86 2-39 (186)
101 1kht_A Adenylate kinase; phosp 99.2 1.2E-11 4E-16 100.2 5.7 39 48-86 3-43 (192)
102 2pez_A Bifunctional 3'-phospho 99.2 1.9E-10 6.5E-15 92.5 12.2 32 46-77 3-34 (179)
103 2j41_A Guanylate kinase; GMP, 99.2 8E-12 2.7E-16 102.6 4.1 180 44-246 2-185 (207)
104 1zak_A Adenylate kinase; ATP:A 99.2 1.5E-11 5.2E-16 102.5 5.8 37 47-86 4-40 (222)
105 3a4m_A L-seryl-tRNA(SEC) kinas 99.2 3.2E-10 1.1E-14 97.0 14.2 163 46-253 2-175 (260)
106 1nn5_A Similar to deoxythymidy 99.2 7.6E-11 2.6E-15 97.3 10.0 29 45-73 6-34 (215)
107 3b60_A Lipid A export ATP-bind 99.2 4.9E-12 1.7E-16 120.3 3.0 136 9-164 341-514 (582)
108 2jaq_A Deoxyguanosine kinase; 99.2 5.4E-11 1.8E-15 97.3 8.0 74 167-249 123-198 (205)
109 2yl4_A ATP-binding cassette SU 99.2 8.2E-12 2.8E-16 119.1 3.0 137 10-164 342-517 (595)
110 3lnc_A Guanylate kinase, GMP k 99.2 2.1E-12 7.1E-17 108.5 -1.0 38 21-73 15-53 (231)
111 1nks_A Adenylate kinase; therm 99.2 8.9E-11 3E-15 95.1 8.7 37 48-84 1-39 (194)
112 3umf_A Adenylate kinase; rossm 99.1 4.7E-11 1.6E-15 99.3 6.8 43 41-86 22-64 (217)
113 3qf4_B Uncharacterized ABC tra 99.1 6.6E-12 2.3E-16 119.8 1.4 134 10-164 355-525 (598)
114 2yvu_A Probable adenylyl-sulfa 99.1 3.7E-10 1.3E-14 91.4 11.5 41 44-84 9-51 (186)
115 4a82_A Cystic fibrosis transme 99.1 9.4E-12 3.2E-16 118.3 2.2 129 15-164 346-511 (578)
116 3a00_A Guanylate kinase, GMP k 99.1 2.4E-11 8.2E-16 98.7 3.6 26 48-73 1-26 (186)
117 3tau_A Guanylate kinase, GMP k 99.1 5E-11 1.7E-15 98.6 5.6 28 46-73 6-33 (208)
118 2bbs_A Cystic fibrosis transme 99.1 3.1E-11 1.1E-15 104.9 4.1 121 21-164 52-193 (290)
119 3d3q_A TRNA delta(2)-isopenten 99.1 5.8E-12 2E-16 111.3 -0.7 40 48-90 7-48 (340)
120 1m7g_A Adenylylsulfate kinase; 99.1 3.8E-10 1.3E-14 93.3 10.1 51 36-86 13-66 (211)
121 2vp4_A Deoxynucleoside kinase; 99.1 1.7E-12 5.9E-17 109.1 -4.4 28 44-71 16-43 (230)
122 1ak2_A Adenylate kinase isoenz 99.1 8.3E-11 2.8E-15 98.9 5.9 39 45-86 13-51 (233)
123 4f4c_A Multidrug resistance pr 99.1 6.8E-12 2.3E-16 129.2 -1.0 140 21-164 1077-1251(1321)
124 3ozx_A RNAse L inhibitor; ATP 99.1 9.6E-11 3.3E-15 110.1 5.8 137 10-164 270-419 (538)
125 3bk7_A ABC transporter ATP-bin 99.1 1.3E-10 4.5E-15 110.6 6.8 136 9-164 357-505 (607)
126 1aky_A Adenylate kinase; ATP:A 99.1 1.1E-10 3.8E-15 97.1 5.4 39 46-87 2-40 (220)
127 3qf4_A ABC transporter, ATP-bi 99.1 1.5E-11 5.1E-16 117.0 -0.1 129 15-164 348-513 (587)
128 2xb4_A Adenylate kinase; ATP-b 99.0 3E-10 1E-14 94.8 7.3 35 49-86 1-35 (223)
129 4f4c_A Multidrug resistance pr 99.0 1.8E-11 6E-16 126.2 -0.7 136 23-164 418-588 (1321)
130 1zd8_A GTP:AMP phosphotransfer 99.0 2.4E-10 8.4E-15 95.5 6.4 38 46-86 5-42 (227)
131 1ex7_A Guanylate kinase; subst 99.0 5.4E-11 1.8E-15 96.7 2.2 24 50-73 3-26 (186)
132 3v9p_A DTMP kinase, thymidylat 99.0 2E-10 6.8E-15 96.2 5.5 33 41-73 18-50 (227)
133 2vli_A Antibiotic resistance p 99.0 9.2E-10 3.1E-14 88.5 9.2 27 47-73 4-30 (183)
134 1kgd_A CASK, peripheral plasma 99.0 3.9E-10 1.3E-14 91.0 6.5 28 46-73 3-30 (180)
135 1yqt_A RNAse L inhibitor; ATP- 99.0 2E-10 7E-15 108.0 5.0 136 9-164 287-435 (538)
136 4hlc_A DTMP kinase, thymidylat 99.0 3E-09 1E-13 87.7 11.4 80 168-250 124-203 (205)
137 3be4_A Adenylate kinase; malar 99.0 4E-10 1.4E-14 93.6 6.1 37 47-86 4-40 (217)
138 2v54_A DTMP kinase, thymidylat 99.0 4.5E-09 1.5E-13 85.9 12.1 26 47-72 3-28 (204)
139 3sr0_A Adenylate kinase; phosp 99.0 5.6E-10 1.9E-14 92.2 6.4 36 49-87 1-36 (206)
140 1z6g_A Guanylate kinase; struc 99.0 1.6E-10 5.4E-15 96.3 2.6 37 21-72 11-47 (218)
141 4edh_A DTMP kinase, thymidylat 98.9 7E-10 2.4E-14 92.1 5.5 34 46-79 4-37 (213)
142 3lv8_A DTMP kinase, thymidylat 98.9 1.4E-09 4.8E-14 91.6 6.9 31 46-76 25-55 (236)
143 3gmt_A Adenylate kinase; ssgci 98.9 3.6E-10 1.2E-14 94.5 3.0 120 46-190 6-132 (230)
144 1e4v_A Adenylate kinase; trans 98.9 4.1E-10 1.4E-14 93.3 3.1 34 50-86 2-35 (214)
145 3g5u_A MCG1178, multidrug resi 98.9 4E-10 1.4E-14 115.9 3.6 117 44-164 1055-1205(1284)
146 3g5u_A MCG1178, multidrug resi 98.9 2.2E-10 7.6E-15 117.7 1.4 115 44-164 412-560 (1284)
147 1zp6_A Hypothetical protein AT 98.9 5.7E-09 2E-13 84.4 9.5 41 44-85 5-45 (191)
148 1ltq_A Polynucleotide kinase; 98.9 4.7E-09 1.6E-13 91.2 9.3 36 48-85 2-37 (301)
149 1ly1_A Polynucleotide kinase; 98.9 3.3E-09 1.1E-13 84.8 7.6 35 48-85 2-37 (181)
150 3j16_B RLI1P; ribosome recycli 98.9 5E-09 1.7E-13 99.7 10.1 131 15-164 353-501 (608)
151 2gks_A Bifunctional SAT/APS ki 98.9 2.3E-09 7.8E-14 101.0 7.3 163 46-251 370-540 (546)
152 4tmk_A Protein (thymidylate ki 98.9 3.7E-09 1.2E-13 87.7 7.7 31 47-77 2-32 (213)
153 3ney_A 55 kDa erythrocyte memb 98.9 6.9E-09 2.4E-13 84.8 8.5 30 44-73 15-44 (197)
154 2iw3_A Elongation factor 3A; a 98.9 2.6E-09 9E-14 105.9 7.1 133 10-164 437-582 (986)
155 3ch4_B Pmkase, phosphomevalona 98.8 2.2E-08 7.4E-13 81.9 11.0 171 45-249 8-194 (202)
156 2ze6_A Isopentenyl transferase 98.8 6.2E-09 2.1E-13 88.6 7.7 35 49-86 2-36 (253)
157 1s96_A Guanylate kinase, GMP k 98.8 1.1E-08 3.6E-13 85.3 8.4 30 45-74 13-42 (219)
158 1x6v_B Bifunctional 3'-phospho 98.8 5.1E-08 1.7E-12 92.6 13.4 37 47-83 51-89 (630)
159 1m8p_A Sulfate adenylyltransfe 98.8 2.5E-08 8.6E-13 94.3 11.2 40 45-84 393-435 (573)
160 3cr8_A Sulfate adenylyltranfer 98.8 7.6E-09 2.6E-13 97.3 7.3 42 44-85 365-409 (552)
161 2bdt_A BH3686; alpha-beta prot 98.7 2.8E-08 9.5E-13 80.3 8.4 37 48-86 2-38 (189)
162 1htw_A HI0065; nucleotide-bind 98.7 1.9E-09 6.5E-14 85.3 0.7 44 15-73 14-58 (158)
163 3j16_B RLI1P; ribosome recycli 98.7 3.8E-09 1.3E-13 100.5 2.8 47 12-74 81-129 (608)
164 3ld9_A DTMP kinase, thymidylat 98.7 9.3E-09 3.2E-13 85.8 3.8 75 168-251 145-219 (223)
165 1yqt_A RNAse L inhibitor; ATP- 98.7 2.2E-08 7.6E-13 94.2 6.3 48 11-74 24-73 (538)
166 3hjn_A DTMP kinase, thymidylat 98.7 5.9E-08 2E-12 79.4 8.1 29 49-77 1-29 (197)
167 1p5z_B DCK, deoxycytidine kina 98.6 1.3E-07 4.4E-12 80.7 10.2 35 45-81 21-55 (263)
168 3bk7_A ABC transporter ATP-bin 98.6 1.8E-08 6.1E-13 96.0 5.2 135 14-164 97-262 (607)
169 3zvl_A Bifunctional polynucleo 98.6 5.4E-08 1.8E-12 88.7 8.1 39 44-85 254-292 (416)
170 1lvg_A Guanylate kinase, GMP k 98.6 4.2E-08 1.4E-12 80.3 6.2 28 46-73 2-29 (198)
171 2ocp_A DGK, deoxyguanosine kin 98.6 1.7E-07 5.8E-12 78.8 10.0 79 168-250 149-239 (241)
172 2bbw_A Adenylate kinase 4, AK4 98.6 3.1E-08 1.1E-12 83.6 4.9 27 47-73 26-52 (246)
173 3a8t_A Adenylate isopentenyltr 98.6 1.6E-07 5.6E-12 82.6 9.0 42 46-90 38-81 (339)
174 2p5t_B PEZT; postsegregational 98.5 1.6E-07 5.4E-12 79.7 8.0 43 44-87 28-70 (253)
175 2v9p_A Replication protein E1; 98.5 1.3E-08 4.3E-13 88.9 0.2 48 15-79 108-155 (305)
176 1dek_A Deoxynucleoside monopho 98.5 4.9E-08 1.7E-12 82.3 3.5 31 49-82 2-32 (241)
177 3ozx_A RNAse L inhibitor; ATP 98.5 5.6E-08 1.9E-12 91.3 3.0 44 15-74 6-51 (538)
178 3tmk_A Thymidylate kinase; pho 98.5 7.4E-07 2.5E-11 73.9 9.3 29 46-74 3-31 (216)
179 4gp7_A Metallophosphoesterase; 98.4 1.6E-07 5.5E-12 74.9 4.2 26 44-69 5-30 (171)
180 3ux8_A Excinuclease ABC, A sub 98.4 2.4E-07 8.2E-12 89.4 5.4 30 21-65 32-61 (670)
181 2qag_B Septin-6, protein NEDD5 98.4 9.6E-08 3.3E-12 86.8 1.9 49 9-72 16-66 (427)
182 3ux8_A Excinuclease ABC, A sub 98.3 6.5E-07 2.2E-11 86.4 6.0 34 21-69 336-369 (670)
183 2iw3_A Elongation factor 3A; a 98.3 1.1E-07 3.8E-12 94.3 0.5 51 9-74 671-725 (986)
184 1znw_A Guanylate kinase, GMP k 98.3 3.9E-07 1.3E-11 74.8 3.6 30 44-73 16-45 (207)
185 2qm8_A GTPase/ATPase; G protei 98.2 2.5E-07 8.7E-12 81.9 2.0 60 9-83 29-92 (337)
186 2yhs_A FTSY, cell division pro 98.2 2.3E-06 7.8E-11 79.0 7.3 42 44-85 289-332 (503)
187 3b9q_A Chloroplast SRP recepto 98.2 1.2E-06 4.3E-11 76.2 5.3 43 44-86 96-139 (302)
188 2obl_A ESCN; ATPase, hydrolase 98.2 7.1E-07 2.4E-11 79.3 3.7 50 9-74 45-97 (347)
189 2eyu_A Twitching motility prot 98.2 8.9E-07 3E-11 75.6 3.7 40 45-84 22-63 (261)
190 1gvn_B Zeta; postsegregational 98.2 8.3E-07 2.8E-11 76.8 3.5 43 44-87 29-71 (287)
191 2dpy_A FLII, flagellum-specifi 98.2 1.1E-06 3.8E-11 80.4 4.4 50 9-74 131-183 (438)
192 3euj_A Chromosome partition pr 98.2 1.2E-06 4E-11 80.9 4.4 44 15-74 11-55 (483)
193 3exa_A TRNA delta(2)-isopenten 98.1 2.1E-06 7.2E-11 74.7 5.3 41 47-90 2-44 (322)
194 1pui_A ENGB, probable GTP-bind 98.1 8.3E-07 2.8E-11 72.4 2.4 47 9-72 3-50 (210)
195 2og2_A Putative signal recogni 98.1 2.3E-06 7.9E-11 76.2 5.3 43 44-86 153-196 (359)
196 3crm_A TRNA delta(2)-isopenten 98.1 2.6E-06 9E-11 74.6 5.6 36 47-85 4-39 (323)
197 1cr0_A DNA primase/helicase; R 98.1 1.4E-06 4.8E-11 75.4 3.7 54 15-83 16-73 (296)
198 2ehv_A Hypothetical protein PH 98.1 3.6E-06 1.2E-10 70.5 5.4 41 44-84 26-69 (251)
199 3foz_A TRNA delta(2)-isopenten 98.1 4.8E-06 1.7E-10 72.3 6.1 43 45-90 7-51 (316)
200 3eph_A TRNA isopentenyltransfe 98.1 4.6E-06 1.6E-10 75.0 6.0 40 48-90 2-43 (409)
201 1tf7_A KAIC; homohexamer, hexa 98.0 2.1E-06 7E-11 80.5 3.8 70 1-84 1-78 (525)
202 2x8a_A Nuclear valosin-contain 98.0 3.3E-06 1.1E-10 72.5 4.5 47 22-86 35-81 (274)
203 1ye8_A Protein THEP1, hypothet 98.0 2.9E-06 1E-10 68.1 3.5 25 49-73 1-25 (178)
204 2npi_A Protein CLP1; CLP1-PCF1 98.0 4.9E-07 1.7E-11 83.3 -1.6 39 44-82 134-175 (460)
205 1zu4_A FTSY; GTPase, signal re 98.0 8.6E-06 2.9E-10 71.5 6.1 42 44-85 101-144 (320)
206 3kta_A Chromosome segregation 98.0 8.9E-06 3.1E-10 64.9 5.7 29 44-73 23-51 (182)
207 2kjq_A DNAA-related protein; s 98.0 5.5E-06 1.9E-10 64.4 4.1 40 47-86 35-76 (149)
208 1rj9_A FTSY, signal recognitio 98.0 2E-05 6.9E-10 68.6 8.0 41 46-86 100-141 (304)
209 1tq4_A IIGP1, interferon-induc 97.9 6.8E-07 2.3E-11 81.1 -1.7 60 15-74 31-95 (413)
210 3czq_A Putative polyphosphate 97.9 2E-05 7E-10 68.1 7.6 37 46-82 84-120 (304)
211 1lw7_A Transcriptional regulat 97.9 5.3E-06 1.8E-10 74.1 3.9 31 44-74 164-196 (365)
212 3e70_C DPA, signal recognition 97.9 1.5E-05 5E-10 70.2 6.6 41 44-84 125-167 (328)
213 2gza_A Type IV secretion syste 97.9 9.9E-07 3.4E-11 78.8 -0.9 38 44-81 171-209 (361)
214 1svm_A Large T antigen; AAA+ f 97.9 3.8E-06 1.3E-10 75.3 2.7 30 44-73 165-194 (377)
215 2pt7_A CAG-ALFA; ATPase, prote 97.9 9.2E-07 3.1E-11 78.1 -2.1 39 44-82 167-206 (330)
216 4a74_A DNA repair and recombin 97.9 6.9E-06 2.3E-10 67.8 3.3 41 44-84 21-69 (231)
217 2f1r_A Molybdopterin-guanine d 97.9 4.7E-06 1.6E-10 66.5 2.0 28 48-75 2-29 (171)
218 3ec2_A DNA replication protein 97.8 5.7E-06 1.9E-10 66.1 2.5 29 45-73 35-63 (180)
219 1gtv_A TMK, thymidylate kinase 97.8 3.4E-06 1.2E-10 69.0 1.0 29 49-77 1-29 (214)
220 4aby_A DNA repair protein RECN 97.8 4.5E-06 1.5E-10 75.6 1.8 43 15-73 42-85 (415)
221 1vma_A Cell division protein F 97.8 1.9E-05 6.4E-10 68.9 5.7 42 44-85 100-143 (306)
222 3b85_A Phosphate starvation-in 97.8 6E-06 2.1E-10 67.9 2.4 27 46-73 20-46 (208)
223 1ixz_A ATP-dependent metallopr 97.8 1.2E-05 3.9E-10 67.9 4.2 36 44-82 47-82 (254)
224 1in4_A RUVB, holliday junction 97.8 2.1E-06 7.2E-11 75.8 -0.6 70 6-84 15-86 (334)
225 1g8f_A Sulfate adenylyltransfe 97.8 1.5E-05 5.2E-10 74.1 5.0 40 45-84 392-435 (511)
226 2cvh_A DNA repair and recombin 97.8 1.7E-05 5.7E-10 65.0 4.6 40 44-84 16-55 (220)
227 2i3b_A HCR-ntpase, human cance 97.8 9.9E-06 3.4E-10 65.6 3.0 26 48-73 1-26 (189)
228 1iy2_A ATP-dependent metallopr 97.8 1.6E-05 5.6E-10 68.0 4.2 36 44-82 71-106 (278)
229 2p67_A LAO/AO transport system 97.8 1E-05 3.6E-10 71.5 3.0 62 9-85 30-95 (341)
230 2qag_C Septin-7; cell cycle, c 97.7 9.1E-06 3.1E-10 73.9 2.2 47 6-73 8-56 (418)
231 1wb9_A DNA mismatch repair pro 97.7 1.9E-05 6.4E-10 77.4 4.4 36 21-72 596-631 (800)
232 3thx_B DNA mismatch repair pro 97.7 1.7E-05 5.7E-10 78.7 3.9 37 20-71 660-696 (918)
233 3jvv_A Twitching mobility prot 97.7 2.7E-05 9.3E-10 69.3 4.7 30 45-74 120-149 (356)
234 1ls1_A Signal recognition part 97.7 3.9E-05 1.3E-09 66.5 5.4 38 47-84 97-136 (295)
235 2w0m_A SSO2452; RECA, SSPF, un 97.7 2E-05 6.8E-10 65.0 3.4 41 44-84 19-61 (235)
236 2o8b_B DNA mismatch repair pro 97.7 2.8E-05 9.6E-10 78.1 4.6 42 15-72 762-812 (1022)
237 3thx_A DNA mismatch repair pro 97.7 2.3E-05 8E-10 77.8 4.0 35 21-70 650-684 (934)
238 1bif_A 6-phosphofructo-2-kinas 97.7 7.2E-05 2.5E-09 69.0 7.1 29 45-73 36-64 (469)
239 2px0_A Flagellar biosynthesis 97.6 3E-05 1E-09 67.2 4.2 40 46-85 103-145 (296)
240 1ewq_A DNA mismatch repair pro 97.6 2.8E-05 9.6E-10 75.8 4.3 34 21-72 567-600 (765)
241 1nij_A Hypothetical protein YJ 97.6 3.3E-05 1.1E-09 67.6 4.4 36 47-82 3-38 (318)
242 2oap_1 GSPE-2, type II secreti 97.6 4.4E-06 1.5E-10 77.9 -1.5 39 44-82 256-295 (511)
243 3sop_A Neuronal-specific septi 97.6 3E-05 1E-09 66.4 3.8 26 49-74 3-28 (270)
244 2ewv_A Twitching motility prot 97.6 4E-05 1.4E-09 68.6 4.4 30 45-74 133-162 (372)
245 1xjc_A MOBB protein homolog; s 97.6 3.6E-05 1.2E-09 61.1 3.6 37 47-83 3-41 (169)
246 1p9r_A General secretion pathw 97.6 6.2E-05 2.1E-09 68.4 5.4 39 46-84 165-204 (418)
247 2qmh_A HPR kinase/phosphorylas 97.6 4.9E-05 1.7E-09 61.8 4.2 35 46-84 32-66 (205)
248 2ffh_A Protein (FFH); SRP54, s 97.6 4.1E-05 1.4E-09 69.6 4.1 39 47-85 97-137 (425)
249 1lv7_A FTSH; alpha/beta domain 97.6 0.0001 3.5E-09 62.1 6.3 36 50-86 47-82 (257)
250 3szr_A Interferon-induced GTP- 97.6 1.1E-05 3.8E-10 76.8 0.1 24 51-74 48-71 (608)
251 1np6_A Molybdopterin-guanine d 97.6 4.6E-05 1.6E-09 60.8 3.7 27 47-73 5-31 (174)
252 3qf7_A RAD50; ABC-ATPase, ATPa 97.5 5.5E-05 1.9E-09 67.6 4.4 42 15-72 5-47 (365)
253 1n0w_A DNA repair protein RAD5 97.5 5.3E-05 1.8E-09 63.0 4.0 41 44-84 20-68 (243)
254 1oix_A RAS-related protein RAB 97.5 4.8E-05 1.7E-09 61.1 3.4 27 46-72 27-53 (191)
255 1j8m_F SRP54, signal recogniti 97.5 0.00011 3.6E-09 63.8 5.3 41 44-85 95-137 (297)
256 4b4t_J 26S protease regulatory 97.5 0.00022 7.4E-09 64.2 7.4 41 45-86 179-219 (405)
257 2vf7_A UVRA2, excinuclease ABC 97.5 1.5E-05 5.3E-10 78.2 -0.2 36 22-72 512-548 (842)
258 3czp_A Putative polyphosphate 97.5 0.00022 7.6E-09 66.0 7.4 38 45-82 40-77 (500)
259 3lda_A DNA repair protein RAD5 97.5 0.0001 3.5E-09 66.6 5.0 42 44-85 174-223 (400)
260 2o5v_A DNA replication and rep 97.4 9.4E-05 3.2E-09 65.8 4.6 41 16-72 9-50 (359)
261 2ygr_A Uvrabc system protein A 97.4 3.3E-05 1.1E-09 76.6 1.1 32 22-68 657-688 (993)
262 2qnr_A Septin-2, protein NEDD5 97.4 4.5E-05 1.5E-09 66.3 1.8 37 14-71 4-41 (301)
263 2dr3_A UPF0273 protein PH0284; 97.4 0.00019 6.7E-09 59.5 5.6 41 44-84 19-61 (247)
264 1pzn_A RAD51, DNA repair and r 97.4 6.2E-05 2.1E-09 66.8 2.6 42 44-85 127-176 (349)
265 2dhr_A FTSH; AAA+ protein, hex 97.4 0.00012 4E-09 68.1 4.5 40 44-86 62-101 (499)
266 2r6f_A Excinuclease ABC subuni 97.4 3.2E-05 1.1E-09 76.5 0.4 32 22-68 639-670 (972)
267 3kl4_A SRP54, signal recogniti 97.3 0.00019 6.4E-09 65.4 5.1 41 46-86 95-137 (433)
268 3tvt_A Disks large 1 tumor sup 97.3 0.00017 5.7E-09 62.3 4.4 88 146-250 186-275 (292)
269 3tqf_A HPR(Ser) kinase; transf 97.3 0.0002 6.7E-09 56.8 4.4 37 46-86 14-50 (181)
270 1nlf_A Regulatory protein REPA 97.3 8.4E-05 2.9E-09 63.6 2.5 29 45-73 27-55 (279)
271 3dm5_A SRP54, signal recogniti 97.3 0.00031 1.1E-08 64.0 5.8 40 47-86 99-140 (443)
272 2qz4_A Paraplegin; AAA+, SPG7, 97.2 0.00048 1.6E-08 57.8 6.3 40 46-86 37-76 (262)
273 1xwi_A SKD1 protein; VPS4B, AA 97.2 0.00037 1.3E-08 61.0 5.8 41 46-86 43-83 (322)
274 2vf7_A UVRA2, excinuclease ABC 97.2 0.0001 3.4E-09 72.5 2.2 35 16-65 16-53 (842)
275 3m6a_A ATP-dependent protease 97.2 0.00021 7.2E-09 67.1 4.3 39 44-84 105-143 (543)
276 1u0l_A Probable GTPase ENGC; p 97.2 0.0001 3.6E-09 63.9 2.0 30 45-74 166-195 (301)
277 2axn_A 6-phosphofructo-2-kinas 97.2 0.00023 8E-09 66.4 4.4 41 45-85 32-74 (520)
278 2yv5_A YJEQ protein; hydrolase 97.2 0.00016 5.5E-09 62.8 3.1 28 45-73 162-189 (302)
279 3pih_A Uvrabc system protein A 97.2 0.00015 5.2E-09 71.8 3.2 29 22-65 599-627 (916)
280 1f2t_A RAD50 ABC-ATPase; DNA d 97.2 0.00033 1.1E-08 54.2 4.5 25 48-72 23-47 (149)
281 3pfi_A Holliday junction ATP-d 97.2 0.0027 9.2E-08 55.4 10.9 37 46-83 53-89 (338)
282 3b9p_A CG5977-PA, isoform A; A 97.2 0.00043 1.5E-08 59.4 5.6 39 47-86 53-91 (297)
283 1e69_A Chromosome segregation 97.2 0.00028 9.4E-09 61.8 4.2 28 44-72 21-48 (322)
284 1jbk_A CLPB protein; beta barr 97.2 0.00026 9.1E-09 55.8 3.8 28 46-73 41-68 (195)
285 1qhl_A Protein (cell division 97.2 3.8E-05 1.3E-09 64.0 -1.3 26 49-74 28-53 (227)
286 1kjw_A Postsynaptic density pr 97.2 0.00029 1E-08 60.9 4.3 173 46-246 103-280 (295)
287 3czp_A Putative polyphosphate 97.2 0.00043 1.5E-08 64.1 5.6 38 45-82 297-334 (500)
288 3cf0_A Transitional endoplasmi 97.1 0.00025 8.4E-09 61.4 3.8 29 45-73 46-74 (301)
289 3hr8_A Protein RECA; alpha and 97.1 0.00046 1.6E-08 61.2 5.3 54 33-86 44-101 (356)
290 2ygr_A Uvrabc system protein A 97.1 0.00013 4.6E-09 72.4 1.9 35 16-65 26-63 (993)
291 2r6f_A Excinuclease ABC subuni 97.1 0.00014 4.6E-09 72.1 1.9 35 16-65 24-61 (972)
292 3h4m_A Proteasome-activating n 97.1 0.00038 1.3E-08 59.3 4.6 40 46-86 49-88 (285)
293 2rcn_A Probable GTPase ENGC; Y 97.1 0.00022 7.6E-09 63.3 3.1 27 47-73 214-240 (358)
294 1p6x_A Thymidine kinase; P-loo 97.1 0.00026 8.8E-09 62.3 3.3 29 46-74 5-33 (334)
295 4fcw_A Chaperone protein CLPB; 97.1 0.00049 1.7E-08 59.3 5.1 40 47-86 46-87 (311)
296 2f9l_A RAB11B, member RAS onco 97.1 0.00033 1.1E-08 56.4 3.8 24 48-71 5-28 (199)
297 3t15_A Ribulose bisphosphate c 97.1 0.00029 9.8E-09 60.8 3.6 37 45-82 33-69 (293)
298 2www_A Methylmalonic aciduria 97.1 0.00037 1.3E-08 61.7 4.4 39 46-84 72-112 (349)
299 2xxa_A Signal recognition part 97.1 0.00065 2.2E-08 61.9 6.1 41 46-86 98-141 (433)
300 2w58_A DNAI, primosome compone 97.1 0.0003 1E-08 56.9 3.4 25 49-73 55-79 (202)
301 1of1_A Thymidine kinase; trans 97.1 0.00031 1.1E-08 62.6 3.6 34 45-78 46-79 (376)
302 3bos_A Putative DNA replicatio 97.1 0.00032 1.1E-08 57.7 3.5 38 47-84 51-90 (242)
303 3pih_A Uvrabc system protein A 97.0 0.00013 4.3E-09 72.4 0.9 28 23-65 14-41 (916)
304 1f6b_A SAR1; gtpases, N-termin 97.0 0.00022 7.5E-09 57.6 2.2 39 16-70 7-47 (198)
305 2p65_A Hypothetical protein PF 97.0 0.00031 1.1E-08 55.3 3.0 28 46-73 41-68 (187)
306 1e2k_A Thymidine kinase; trans 97.0 0.00031 1.1E-08 61.7 3.2 32 47-78 3-34 (331)
307 2ce7_A Cell division protein F 97.0 0.00045 1.6E-08 63.7 4.4 35 51-86 52-86 (476)
308 1m2o_B GTP-binding protein SAR 97.0 0.00033 1.1E-08 56.0 3.0 27 44-71 20-46 (190)
309 1t9h_A YLOQ, probable GTPase E 97.0 8.1E-05 2.8E-09 64.8 -0.8 30 44-73 169-198 (307)
310 4b4t_L 26S protease subunit RP 97.0 0.00068 2.3E-08 61.7 5.3 44 44-88 211-254 (437)
311 3p32_A Probable GTPase RV1496/ 97.0 0.00084 2.9E-08 59.5 5.8 40 45-84 76-117 (355)
312 1c9k_A COBU, adenosylcobinamid 97.0 0.00045 1.5E-08 55.3 3.6 33 50-84 1-33 (180)
313 3kkq_A RAS-related protein M-R 97.0 0.00058 2E-08 53.8 4.2 31 41-71 11-41 (183)
314 3k1j_A LON protease, ATP-depen 97.0 0.00015 5.2E-09 69.0 0.8 32 44-75 56-87 (604)
315 4b4t_K 26S protease regulatory 97.0 0.00075 2.6E-08 61.3 5.2 43 44-87 202-244 (428)
316 1z06_A RAS-related protein RAB 97.0 0.00052 1.8E-08 54.6 3.8 36 36-71 8-43 (189)
317 2gj8_A MNME, tRNA modification 97.0 0.00041 1.4E-08 54.6 3.1 26 46-71 2-27 (172)
318 1d2n_A N-ethylmaleimide-sensit 96.9 0.00088 3E-08 56.8 5.2 29 45-73 61-89 (272)
319 4b4t_M 26S protease regulatory 96.9 0.00074 2.5E-08 61.5 5.0 43 44-87 211-253 (434)
320 2j37_W Signal recognition part 96.9 0.00079 2.7E-08 62.5 5.2 41 46-86 99-141 (504)
321 2wji_A Ferrous iron transport 96.9 0.00045 1.5E-08 53.8 3.0 24 48-71 3-26 (165)
322 2v3c_C SRP54, signal recogniti 96.9 0.00042 1.4E-08 63.2 3.1 41 46-86 97-139 (432)
323 1sxj_C Activator 1 40 kDa subu 96.9 0.00015 5.1E-09 63.8 0.1 23 51-73 49-71 (340)
324 3ihw_A Centg3; RAS, centaurin, 96.9 0.00076 2.6E-08 53.6 4.2 28 44-71 16-43 (184)
325 2wjg_A FEOB, ferrous iron tran 96.9 0.00061 2.1E-08 53.9 3.6 25 47-71 6-30 (188)
326 2zr9_A Protein RECA, recombina 96.9 0.0008 2.7E-08 59.6 4.5 51 36-86 47-101 (349)
327 1v5w_A DMC1, meiotic recombina 96.9 0.0013 4.4E-08 58.0 5.8 42 44-85 118-167 (343)
328 3n70_A Transport activator; si 96.8 0.00064 2.2E-08 52.1 3.3 25 48-72 24-48 (145)
329 2oil_A CATX-8, RAS-related pro 96.8 0.0007 2.4E-08 53.9 3.6 28 44-71 21-48 (193)
330 1njg_A DNA polymerase III subu 96.8 0.00072 2.5E-08 55.2 3.7 26 48-73 45-70 (250)
331 1osn_A Thymidine kinase, VZV-T 96.8 0.00042 1.4E-08 61.0 2.3 33 44-76 8-41 (341)
332 1ega_A Protein (GTP-binding pr 96.8 0.00056 1.9E-08 59.2 3.1 26 46-71 6-31 (301)
333 1udx_A The GTP-binding protein 96.8 0.00033 1.1E-08 63.6 1.5 28 44-71 153-180 (416)
334 3syl_A Protein CBBX; photosynt 96.8 0.00079 2.7E-08 58.0 3.9 41 46-86 65-111 (309)
335 3qks_A DNA double-strand break 96.8 0.0013 4.4E-08 53.5 4.9 26 48-73 23-48 (203)
336 1ofh_A ATP-dependent HSL prote 96.8 0.00084 2.9E-08 57.6 4.0 38 47-85 49-86 (310)
337 1tf7_A KAIC; homohexamer, hexa 96.8 0.00071 2.4E-08 63.2 3.7 33 44-76 277-309 (525)
338 2zan_A Vacuolar protein sortin 96.8 0.0011 3.7E-08 60.7 4.8 41 46-86 165-205 (444)
339 1ni3_A YCHF GTPase, YCHF GTP-b 96.8 0.00075 2.6E-08 60.7 3.5 27 44-70 16-42 (392)
340 1sxj_E Activator 1 40 kDa subu 96.7 0.00072 2.5E-08 59.4 3.3 22 51-72 39-60 (354)
341 1ko7_A HPR kinase/phosphatase; 96.7 0.0011 3.9E-08 57.6 4.5 34 47-84 143-176 (314)
342 1fnn_A CDC6P, cell division co 96.7 0.0011 3.9E-08 58.7 4.5 33 50-82 46-81 (389)
343 2chg_A Replication factor C sm 96.7 0.00089 3E-08 54.0 3.5 22 51-72 41-62 (226)
344 4b4t_H 26S protease regulatory 96.7 0.0011 3.8E-08 60.6 4.3 42 44-86 239-280 (467)
345 2a9k_A RAS-related protein RAL 96.7 0.001 3.5E-08 52.2 3.7 26 46-71 16-41 (187)
346 2fn4_A P23, RAS-related protei 96.7 0.0011 3.8E-08 51.8 3.9 27 45-71 6-32 (181)
347 3shw_A Tight junction protein 96.7 0.0039 1.3E-07 57.2 7.9 95 145-248 277-373 (468)
348 1w1w_A Structural maintenance 96.7 0.001 3.5E-08 60.5 4.1 31 44-74 22-52 (430)
349 1yrb_A ATP(GTP)binding protein 96.7 0.0024 8E-08 53.6 6.1 40 45-84 11-51 (262)
350 1tue_A Replication protein E1; 96.7 0.00077 2.6E-08 55.0 2.9 29 45-73 55-83 (212)
351 2wsm_A Hydrogenase expression/ 96.7 0.0011 3.9E-08 54.0 4.0 39 46-84 28-67 (221)
352 1l8q_A Chromosomal replication 96.7 0.00092 3.1E-08 58.2 3.4 37 47-83 36-74 (324)
353 1upt_A ARL1, ADP-ribosylation 96.7 0.0015 5.3E-08 50.5 4.3 26 45-70 4-29 (171)
354 3d8b_A Fidgetin-like protein 1 96.7 0.0014 4.6E-08 58.2 4.5 40 46-86 115-154 (357)
355 3eie_A Vacuolar protein sortin 96.7 0.0014 4.8E-08 57.1 4.5 36 46-82 49-84 (322)
356 4bas_A ADP-ribosylation factor 96.7 0.0011 3.6E-08 52.9 3.5 32 39-70 8-39 (199)
357 4b4t_I 26S protease regulatory 96.7 0.0016 5.4E-08 59.0 4.8 42 44-86 212-253 (437)
358 2orw_A Thymidine kinase; TMTK, 96.7 0.0011 3.7E-08 53.2 3.4 25 48-72 3-27 (184)
359 2dyk_A GTP-binding protein; GT 96.7 0.0014 4.7E-08 50.2 3.9 23 49-71 2-24 (161)
360 1x3s_A RAS-related protein RAB 96.7 0.00079 2.7E-08 53.4 2.6 26 46-71 13-38 (195)
361 1z0f_A RAB14, member RAS oncog 96.7 0.0012 4.1E-08 51.5 3.6 27 45-71 12-38 (179)
362 2qu8_A Putative nucleolar GTP- 96.6 0.00097 3.3E-08 54.9 3.2 26 46-71 27-52 (228)
363 2ew1_A RAS-related protein RAB 96.6 0.0011 3.6E-08 53.7 3.4 28 44-71 22-49 (201)
364 1kao_A RAP2A; GTP-binding prot 96.6 0.0013 4.6E-08 50.4 3.8 24 48-71 3-26 (167)
365 2ged_A SR-beta, signal recogni 96.6 0.0012 4.2E-08 52.4 3.7 26 46-71 46-71 (193)
366 1ypw_A Transitional endoplasmi 96.6 0.00088 3E-08 65.8 3.3 37 45-82 235-271 (806)
367 1z2a_A RAS-related protein RAB 96.6 0.0013 4.5E-08 50.6 3.7 25 47-71 4-28 (168)
368 3c5c_A RAS-like protein 12; GD 96.6 0.0013 4.5E-08 52.2 3.8 28 44-71 17-44 (187)
369 3hws_A ATP-dependent CLP prote 96.6 0.00098 3.3E-08 59.1 3.3 35 47-82 50-84 (363)
370 3qkt_A DNA double-strand break 96.6 0.0016 5.6E-08 57.2 4.7 25 48-72 23-47 (339)
371 2ce2_X GTPase HRAS; signaling 96.6 0.0013 4.3E-08 50.4 3.5 23 49-71 4-26 (166)
372 3ice_A Transcription terminati 96.6 0.00085 2.9E-08 60.0 2.8 30 43-72 169-198 (422)
373 2qby_A CDC6 homolog 1, cell di 96.6 0.00093 3.2E-08 59.0 3.1 28 46-73 43-70 (386)
374 2a5j_A RAS-related protein RAB 96.6 0.0011 3.7E-08 52.8 3.2 28 44-71 17-44 (191)
375 2il1_A RAB12; G-protein, GDP, 96.6 0.0011 3.9E-08 52.8 3.2 28 43-70 21-48 (192)
376 1ky3_A GTP-binding protein YPT 96.6 0.0015 5E-08 51.1 3.8 26 46-71 6-31 (182)
377 2r62_A Cell division protease 96.6 0.00058 2E-08 57.7 1.5 23 51-73 47-69 (268)
378 3uk6_A RUVB-like 2; hexameric 96.6 0.0015 5.1E-08 57.7 4.3 28 46-73 68-95 (368)
379 3bc1_A RAS-related protein RAB 96.6 0.0013 4.5E-08 51.9 3.6 27 45-71 8-34 (195)
380 2b8t_A Thymidine kinase; deoxy 96.6 0.0012 4.3E-08 54.6 3.5 36 45-80 9-46 (223)
381 3t34_A Dynamin-related protein 96.6 0.001 3.6E-08 58.9 3.2 33 21-71 25-57 (360)
382 2r6a_A DNAB helicase, replicat 96.6 0.00086 2.9E-08 61.5 2.7 40 44-83 199-241 (454)
383 3con_A GTPase NRAS; structural 96.6 0.0013 4.3E-08 52.2 3.4 26 46-71 19-44 (190)
384 2fv8_A H6, RHO-related GTP-bin 96.6 0.00096 3.3E-08 54.0 2.7 28 44-71 21-48 (207)
385 2xkx_A Disks large homolog 4; 96.6 0.0069 2.3E-07 58.8 9.1 128 46-189 529-661 (721)
386 1g41_A Heat shock protein HSLU 96.6 0.0016 5.5E-08 59.4 4.4 33 49-82 51-83 (444)
387 3rhf_A Putative polyphosphate 96.6 0.01 3.4E-07 50.7 9.0 37 46-82 73-109 (289)
388 1u8z_A RAS-related protein RAL 96.6 0.0016 5.4E-08 50.0 3.7 24 48-71 4-27 (168)
389 1um8_A ATP-dependent CLP prote 96.6 0.0018 6.1E-08 57.7 4.6 36 47-83 71-106 (376)
390 2h17_A ADP-ribosylation factor 96.6 0.001 3.5E-08 52.4 2.7 28 44-71 17-44 (181)
391 2zej_A Dardarin, leucine-rich 96.6 0.001 3.5E-08 52.7 2.7 23 49-71 3-25 (184)
392 3lxx_A GTPase IMAP family memb 96.6 0.0012 4.3E-08 54.7 3.3 27 45-71 26-52 (239)
393 3tsz_A Tight junction protein 96.6 0.0053 1.8E-07 55.1 7.6 93 146-247 286-380 (391)
394 2lkc_A Translation initiation 96.5 0.0014 4.9E-08 51.1 3.4 27 45-71 5-31 (178)
395 2hf9_A Probable hydrogenase ni 96.5 0.0018 6.1E-08 53.0 4.1 38 46-83 36-74 (226)
396 4ad8_A DNA repair protein RECN 96.5 0.0011 3.8E-08 61.8 3.1 43 15-73 42-85 (517)
397 2gf9_A RAS-related protein RAB 96.5 0.0014 4.7E-08 52.0 3.3 27 45-71 19-45 (189)
398 2z43_A DNA repair and recombin 96.5 0.0015 5.3E-08 57.0 3.9 42 44-85 103-152 (324)
399 3clv_A RAB5 protein, putative; 96.5 0.0021 7.3E-08 51.0 4.5 26 46-71 5-30 (208)
400 1c1y_A RAS-related protein RAP 96.5 0.0018 6.1E-08 49.8 3.7 23 48-70 3-25 (167)
401 2erx_A GTP-binding protein DI- 96.5 0.0015 5.1E-08 50.5 3.3 23 48-70 3-25 (172)
402 1xx6_A Thymidine kinase; NESG, 96.5 0.0018 6.2E-08 52.3 3.8 36 45-80 5-42 (191)
403 2xtp_A GTPase IMAP family memb 96.5 0.0014 5E-08 55.0 3.3 27 45-71 19-45 (260)
404 3vfd_A Spastin; ATPase, microt 96.5 0.0027 9.1E-08 56.9 5.2 39 47-86 147-185 (389)
405 2bov_A RAla, RAS-related prote 96.5 0.0021 7E-08 51.5 4.0 26 46-71 12-37 (206)
406 1z08_A RAS-related protein RAB 96.5 0.0017 5.9E-08 50.1 3.4 26 46-71 4-29 (170)
407 1svi_A GTP-binding protein YSX 96.5 0.0016 5.3E-08 51.8 3.1 26 46-71 21-46 (195)
408 2r2a_A Uncharacterized protein 96.4 0.0017 5.8E-08 52.8 3.3 26 46-71 3-28 (199)
409 2gf0_A GTP-binding protein DI- 96.4 0.0024 8.1E-08 50.8 4.2 26 45-70 5-30 (199)
410 3llu_A RAS-related GTP-binding 96.4 0.0012 4.1E-08 52.9 2.4 35 37-71 9-43 (196)
411 1g16_A RAS-related protein SEC 96.4 0.0019 6.5E-08 49.8 3.5 24 48-71 3-26 (170)
412 2bjv_A PSP operon transcriptio 96.4 0.0017 5.7E-08 54.8 3.4 37 48-84 29-67 (265)
413 2nzj_A GTP-binding protein REM 96.4 0.0021 7.3E-08 49.8 3.8 25 47-71 3-27 (175)
414 2zts_A Putative uncharacterize 96.4 0.002 6.9E-08 53.3 3.8 39 45-83 27-68 (251)
415 4dsu_A GTPase KRAS, isoform 2B 96.4 0.0019 6.4E-08 50.9 3.4 25 47-71 3-27 (189)
416 3lxw_A GTPase IMAP family memb 96.4 0.0016 5.6E-08 54.5 3.2 27 45-71 18-44 (247)
417 1nrj_B SR-beta, signal recogni 96.4 0.0019 6.6E-08 52.4 3.6 27 46-72 10-36 (218)
418 1u94_A RECA protein, recombina 96.4 0.0027 9.1E-08 56.4 4.7 42 45-86 60-103 (356)
419 1ek0_A Protein (GTP-binding pr 96.4 0.0018 6.1E-08 49.9 3.2 24 48-71 3-26 (170)
420 2efe_B Small GTP-binding prote 96.4 0.0019 6.6E-08 50.5 3.4 26 46-71 10-35 (181)
421 2g6b_A RAS-related protein RAB 96.4 0.002 6.9E-08 50.3 3.6 27 45-71 7-33 (180)
422 2v1u_A Cell division control p 96.4 0.0015 5.2E-08 57.7 3.2 27 46-72 42-68 (387)
423 2bme_A RAB4A, RAS-related prot 96.4 0.0018 6.2E-08 51.0 3.3 27 45-71 7-33 (186)
424 3tw8_B RAS-related protein RAB 96.4 0.0018 6.2E-08 50.5 3.2 26 45-70 6-31 (181)
425 1wms_A RAB-9, RAB9, RAS-relate 96.4 0.0018 6.1E-08 50.5 3.2 26 46-71 5-30 (177)
426 2hxs_A RAB-26, RAS-related pro 96.4 0.0023 7.8E-08 49.9 3.8 26 46-71 4-29 (178)
427 3k53_A Ferrous iron transport 96.4 0.0017 5.9E-08 55.1 3.3 24 48-71 3-26 (271)
428 2o52_A RAS-related protein RAB 96.4 0.0017 5.9E-08 52.2 3.1 27 44-70 21-47 (200)
429 1sxj_D Activator 1 41 kDa subu 96.4 0.0018 6.2E-08 56.6 3.5 23 51-73 61-83 (353)
430 2p5s_A RAS and EF-hand domain 96.4 0.0023 8E-08 51.2 3.9 28 44-71 24-51 (199)
431 2qp9_X Vacuolar protein sortin 96.4 0.0018 6.1E-08 57.4 3.4 27 47-73 83-109 (355)
432 1knx_A Probable HPR(Ser) kinas 96.4 0.0016 5.5E-08 56.5 3.0 35 46-84 145-179 (312)
433 2z4s_A Chromosomal replication 96.4 0.0018 6E-08 59.2 3.4 25 48-72 130-154 (440)
434 1z0j_A RAB-22, RAS-related pro 96.4 0.0019 6.4E-08 49.9 3.1 25 47-71 5-29 (170)
435 3fwy_A Light-independent proto 96.4 0.004 1.4E-07 54.2 5.5 42 44-85 44-87 (314)
436 1vg8_A RAS-related protein RAB 96.4 0.0023 8E-08 51.3 3.8 27 45-71 5-31 (207)
437 1sxj_A Activator 1 95 kDa subu 96.4 0.003 1E-07 58.8 5.0 37 47-84 76-112 (516)
438 1hqc_A RUVB; extended AAA-ATPa 96.4 0.0025 8.7E-08 55.1 4.3 38 47-85 37-74 (324)
439 2h57_A ADP-ribosylation factor 96.4 0.0017 5.7E-08 51.6 2.8 28 44-71 17-44 (190)
440 1gwn_A RHO-related GTP-binding 96.4 0.0022 7.5E-08 52.0 3.5 27 45-71 25-51 (205)
441 2f7s_A C25KG, RAS-related prot 96.4 0.0021 7.3E-08 52.1 3.5 28 44-71 21-48 (217)
442 3pxi_A Negative regulator of g 96.3 0.022 7.7E-07 55.4 11.2 38 50-87 523-562 (758)
443 3bwd_D RAC-like GTP-binding pr 96.3 0.0022 7.7E-08 50.1 3.5 26 46-71 6-31 (182)
444 3tkl_A RAS-related protein RAB 96.3 0.0023 7.9E-08 50.8 3.6 26 46-71 14-39 (196)
445 3pqc_A Probable GTP-binding pr 96.3 0.0015 5E-08 51.8 2.3 26 46-71 21-46 (195)
446 2iwr_A Centaurin gamma 1; ANK 96.3 0.0021 7.3E-08 50.2 3.3 26 46-71 5-30 (178)
447 2j9r_A Thymidine kinase; TK1, 96.3 0.0022 7.4E-08 52.7 3.3 38 36-73 16-53 (214)
448 2qby_B CDC6 homolog 3, cell di 96.3 0.0022 7.6E-08 56.8 3.6 27 46-72 43-69 (384)
449 3end_A Light-independent proto 96.3 0.0047 1.6E-07 53.3 5.5 42 44-85 37-80 (307)
450 3oes_A GTPase rhebl1; small GT 96.3 0.0025 8.5E-08 51.1 3.5 26 46-71 22-47 (201)
451 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.0015 5.2E-08 57.0 2.3 27 45-71 120-146 (331)
452 2fg5_A RAB-22B, RAS-related pr 96.3 0.0023 7.8E-08 51.0 3.2 26 46-71 21-46 (192)
453 3cph_A RAS-related protein SEC 96.3 0.0029 1E-07 50.9 3.9 28 44-71 16-43 (213)
454 1zd9_A ADP-ribosylation factor 96.3 0.0026 8.9E-08 50.4 3.5 26 46-71 20-45 (188)
455 1r2q_A RAS-related protein RAB 96.3 0.0024 8.2E-08 49.2 3.2 24 48-71 6-29 (170)
456 2g3y_A GTP-binding protein GEM 96.3 0.0028 9.7E-08 51.8 3.8 25 46-70 35-59 (211)
457 1m7b_A RND3/RHOE small GTP-bin 96.3 0.0027 9.3E-08 50.1 3.5 26 46-71 5-30 (184)
458 1r6b_X CLPA protein; AAA+, N-t 96.3 0.012 4E-07 57.4 8.7 38 48-86 488-525 (758)
459 2c9o_A RUVB-like 1; hexameric 96.2 0.0035 1.2E-07 57.4 4.6 41 46-86 61-102 (456)
460 1moz_A ARL1, ADP-ribosylation 96.2 0.0019 6.7E-08 50.6 2.5 25 46-70 16-40 (183)
461 2qgz_A Helicase loader, putati 96.2 0.0027 9.2E-08 55.1 3.6 26 48-73 152-177 (308)
462 1fzq_A ADP-ribosylation factor 96.2 0.003 1E-07 49.8 3.7 26 46-71 14-39 (181)
463 3reg_A RHO-like small GTPase; 96.2 0.0027 9.3E-08 50.5 3.4 27 45-71 20-46 (194)
464 2atv_A RERG, RAS-like estrogen 96.2 0.0035 1.2E-07 49.9 4.1 26 46-71 26-51 (196)
465 2y8e_A RAB-protein 6, GH09086P 96.2 0.0026 8.7E-08 49.5 3.2 24 48-71 14-37 (179)
466 2j1l_A RHO-related GTP-binding 96.2 0.0029 1E-07 51.4 3.6 25 46-70 32-56 (214)
467 3q85_A GTP-binding protein REM 96.2 0.0032 1.1E-07 48.6 3.6 22 49-70 3-24 (169)
468 2q3h_A RAS homolog gene family 96.2 0.0032 1.1E-07 50.3 3.7 28 44-71 16-43 (201)
469 3co5_A Putative two-component 96.2 0.0012 4.1E-08 50.5 1.0 23 50-72 29-51 (143)
470 1xp8_A RECA protein, recombina 96.2 0.0039 1.3E-07 55.5 4.5 53 34-86 58-114 (366)
471 3bh0_A DNAB-like replicative h 96.2 0.0033 1.1E-07 54.7 4.0 40 44-83 64-105 (315)
472 3q72_A GTP-binding protein RAD 96.2 0.0025 8.7E-08 49.0 2.9 22 49-70 3-24 (166)
473 1r8s_A ADP-ribosylation factor 96.2 0.0031 1.1E-07 48.4 3.3 22 50-71 2-23 (164)
474 3pvs_A Replication-associated 96.2 0.0028 9.7E-08 58.0 3.5 25 49-73 51-75 (447)
475 3t5g_A GTP-binding protein RHE 96.2 0.0026 9E-08 49.8 2.9 24 47-70 5-28 (181)
476 1ksh_A ARF-like protein 2; sma 96.1 0.0036 1.2E-07 49.3 3.7 25 46-70 16-40 (186)
477 1mh1_A RAC1; GTP-binding, GTPa 96.1 0.0032 1.1E-07 49.3 3.4 25 47-71 4-28 (186)
478 1cp2_A CP2, nitrogenase iron p 96.1 0.0063 2.2E-07 51.2 5.4 39 48-86 1-41 (269)
479 3t1o_A Gliding protein MGLA; G 96.1 0.0035 1.2E-07 49.5 3.6 27 46-72 12-38 (198)
480 3auy_A DNA double-strand break 96.1 0.0032 1.1E-07 56.0 3.6 23 49-71 26-48 (371)
481 1zj6_A ADP-ribosylation factor 96.1 0.0038 1.3E-07 49.3 3.7 26 45-70 13-38 (187)
482 2r44_A Uncharacterized protein 96.1 0.0035 1.2E-07 54.6 3.7 33 49-82 47-79 (331)
483 3kjh_A CO dehydrogenase/acetyl 96.0 0.0043 1.5E-07 51.4 3.8 35 50-84 2-38 (254)
484 3b1v_A Ferrous iron uptake tra 96.0 0.0034 1.2E-07 53.5 3.2 24 48-71 3-26 (272)
485 3q3j_B RHO-related GTP-binding 96.0 0.0046 1.6E-07 50.3 3.9 28 44-71 23-50 (214)
486 1jr3_A DNA polymerase III subu 96.0 0.0035 1.2E-07 55.2 3.3 27 47-73 37-63 (373)
487 4ag6_A VIRB4 ATPase, type IV s 96.0 0.0031 1E-07 56.5 3.0 36 48-83 35-72 (392)
488 1g8p_A Magnesium-chelatase 38 96.0 0.0021 7.3E-08 56.2 1.9 23 51-73 48-70 (350)
489 2gco_A H9, RHO-related GTP-bin 96.0 0.0037 1.3E-07 50.2 3.2 26 46-71 23-48 (201)
490 3iev_A GTP-binding protein ERA 96.0 0.0033 1.1E-07 54.5 3.0 28 44-71 6-33 (308)
491 2afh_E Nitrogenase iron protei 96.0 0.0082 2.8E-07 51.2 5.5 39 48-86 2-42 (289)
492 2i1q_A DNA repair and recombin 96.0 0.0032 1.1E-07 54.8 2.9 38 34-71 83-121 (322)
493 3cbq_A GTP-binding protein REM 96.0 0.0034 1.2E-07 50.3 2.9 25 46-70 21-45 (195)
494 2fh5_B SR-beta, signal recogni 96.0 0.0038 1.3E-07 50.4 3.2 26 46-71 5-30 (214)
495 1iqp_A RFCS; clamp loader, ext 96.0 0.0041 1.4E-07 53.6 3.6 23 51-73 49-71 (327)
496 1ypw_A Transitional endoplasmi 96.0 0.002 6.7E-08 63.4 1.6 40 45-85 508-547 (806)
497 2hup_A RAS-related protein RAB 96.0 0.0042 1.4E-07 49.9 3.4 27 45-71 26-52 (201)
498 3dz8_A RAS-related protein RAB 96.0 0.0026 8.8E-08 50.6 2.0 27 46-72 21-47 (191)
499 3u61_B DNA polymerase accessor 96.0 0.0041 1.4E-07 53.9 3.5 37 45-82 45-81 (324)
500 2bcg_Y Protein YP2, GTP-bindin 96.0 0.0043 1.5E-07 49.8 3.3 26 46-71 6-31 (206)
No 1
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.94 E-value=4.4e-26 Score=194.58 Aligned_cols=215 Identities=49% Similarity=0.886 Sum_probs=165.2
Q ss_pred ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-------CCEEEEcCCCCCCCCCHHH
Q 023701 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-------QRVVLVNQDSFYHNLTEQE 93 (278)
Q Consensus 21 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~-------~~~~~i~~D~~~~~~~~~~ 93 (278)
.+|++||| ...++.+|+|+||+|||||||++.|++.++. ..+.++++|.+|+.++..+
T Consensus 13 ~~l~~isl---------------~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~ 77 (245)
T 2jeo_A 13 LGTENLYF---------------QSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQ 77 (245)
T ss_dssp -------------------------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHH
T ss_pred eeecceec---------------cCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhH
Confidence 46999999 9999999999999999999999999998742 2356889998888777655
Q ss_pred HHH--ccccCCCCCCcccHHHHHHHHHHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCe
Q 023701 94 LAR--VHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNM 171 (278)
Q Consensus 94 ~~~--~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~ 171 (278)
+.. .+.+.|+++..++.+.+.+.++.+..+.....+.++.+...+... ...+.+++++|+||+..+.+..+.+.+|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~l~~~~~~ 156 (245)
T 2jeo_A 78 KAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQEIRDMFHL 156 (245)
T ss_dssp HHHHHTTCCCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHHHHTTCSE
T ss_pred hhhhhccCCCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHHHHHhcCe
Confidence 433 234466667778888888888888776666667888877777544 34566788999999998878888888999
Q ss_pred EEEEecChhhhhHHhhhccccccCCCHHHHHHHHhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHHHhhcc
Q 023701 172 KIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQ 251 (278)
Q Consensus 172 ~I~l~~~~e~~l~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~i~~~i~~~l~~ 251 (278)
+|||.++.+.+++|++.|+. ..|.+.++...+|.....+.+++++.|.+..||+||++..+|..+++.++++|.+.+.+
T Consensus 157 ~i~v~th~~~~~~r~~~r~~-~~G~~~e~~~~~~~~~~~~~~~~~i~p~~~~aD~vi~~~~dn~~~~~~l~~~i~~~~~~ 235 (245)
T 2jeo_A 157 RLFVDTDSDVRLSRRVLRDV-RRGRDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNG 235 (245)
T ss_dssp EEEEECCHHHHHHHHHHHHT-C---CHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEESSTTCHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCHHHHHHHHHHHHH-HcCCCHHHHHHHHHHhhhHhHHHhCCcchhcceEEEcCCCCccHHHHHHHHHHHHHHhc
Confidence 99999999999999998875 66778899988888778888899999999999999977656677889999999888765
Q ss_pred C
Q 023701 252 H 252 (278)
Q Consensus 252 ~ 252 (278)
+
T Consensus 236 ~ 236 (245)
T 2jeo_A 236 D 236 (245)
T ss_dssp C
T ss_pred c
Confidence 4
No 2
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.94 E-value=4.5e-26 Score=189.82 Aligned_cols=207 Identities=43% Similarity=0.773 Sum_probs=166.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCC
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ 124 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~ 124 (278)
+.++.+|+|+|++|||||||++.|++.+++ .+.++++|.++.............+.|+.+..++.+.+.+.+..+..+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 81 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRGL 81 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG-GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHTTC
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHcCC
Confidence 567899999999999999999999999843 4899999998864332222222334466677788888889998888887
Q ss_pred CccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhccccccCCCHHHHHHH
Q 023701 125 AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQ 204 (278)
Q Consensus 125 ~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~l~R~~~R~~~~~~~~~~~~~~~ 204 (278)
.+..|.++...+.+... ...+...+++++|+++.+.|+.....+|.+|||+++.+.++.|+++|+...++.+.....+.
T Consensus 82 ~~~~~~~~~s~g~~~~~-~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~ 160 (211)
T 3asz_A 82 PVEMPVYDFRAYTRSPR-RTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQ 160 (211)
T ss_dssp CEEECCEETTTTEECSS-CEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred CcCCCcccCcccCCCCC-eEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77778777777665332 23455678999999999999989999999999999999999999998755567888888888
Q ss_pred HhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHHHhhccCc
Q 023701 205 YSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHD 253 (278)
Q Consensus 205 ~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~i~~~i~~~l~~~~ 253 (278)
+.....+.|..|+.|++..||+||+|+++++..++.+.++|++.+.+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~aD~ii~~~~~~~~~~~~~~~~i~~~~~~~~ 209 (211)
T 3asz_A 161 YLEQVKPMHLHFVEPTKRYADVIVPRGGQNPVALEMLAAKALARLARMG 209 (211)
T ss_dssp HHHTHHHHHHHTTGGGGGGCSEEEESTTSCHHHHHHHHHHHTHHHHC--
T ss_pred HHHhhhhhHHHhcccchhcCeEEEeCCCcchHHHHHHHHHHHHHHHhhc
Confidence 8888889999999999999999999998888899999999988876543
No 3
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.93 E-value=6.1e-25 Score=188.26 Aligned_cols=207 Identities=54% Similarity=0.911 Sum_probs=159.3
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-------CCEEEEcCCCCCCCCCHHH--HHHccccCCCCCCcccHHHHH
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-------QRVVLVNQDSFYHNLTEQE--LARVHEYNFDHPDAFDTEKLL 114 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~-------~~~~~i~~D~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~~ 114 (278)
...++.+|+|+|++||||||+|+.|++.++. ..+.++++|+|++.+.... ....+.+.|++++.+|.+.+.
T Consensus 18 ~~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d~~~l~ 97 (252)
T 1uj2_A 18 NGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELIL 97 (252)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHH
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhhHHHHH
Confidence 3456789999999999999999999998752 1355899999998765432 234567789999999999999
Q ss_pred HHHHHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhcccccc
Q 023701 115 SSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEK 194 (278)
Q Consensus 115 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~l~R~~~R~~~~~ 194 (278)
+.|+.+.++..+..|.|++....+... .....+.+++|+||++.+.++.+.+.+|.+|||+++.+++++|+..|+...+
T Consensus 98 ~~L~~l~~~~~v~~~~~d~~~~~~~~~-~~~~~~~~~vIveG~~~~~~~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~r 176 (252)
T 1uj2_A 98 KTLKEITEGKTVQIPVYDFVSHSRKEE-TVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISER 176 (252)
T ss_dssp HHHHHHHTTCCEEEEEEETTTTEEEEE-EEEECCCSEEEEECTTTTSSHHHHHHCSEEEEEECCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCeeecCccccccccCCCc-eeeeCCCcEEEEeeeccccCHHHHHhcCeeEEEeCCHHHHHHHHHHHHHhhh
Confidence 999999988878888888776655321 2233456799999999876778888899999999999999999998864445
Q ss_pred CCCHHHHHHHHhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHHHhhcc
Q 023701 195 GRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQ 251 (278)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~i~~~i~~~l~~ 251 (278)
+.+.+...+++.....+.|..++.|....||++|++.-++...++++.++|.+.+..
T Consensus 177 g~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~id~~~s~e~v~~~I~~~l~~ 233 (252)
T 1uj2_A 177 GRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDILNG 233 (252)
T ss_dssp CCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETGGGCHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEecCCCChhHHHHHHHHHHHHHcc
Confidence 667777777777766667778888888899999944333345677777777766643
No 4
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=99.92 E-value=2.9e-25 Score=195.80 Aligned_cols=188 Identities=24% Similarity=0.411 Sum_probs=149.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCC----CCEEEEcCCCCCCCCCHHHHHHccc-cCCCCCCcccHHHHHHHHHH
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD----QRVVLVNQDSFYHNLTEQELARVHE-YNFDHPDAFDTEKLLSSMEK 119 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~~----~~~~~i~~D~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~l~~ 119 (278)
..++.+|||+||+||||||+++.|++.+.. ..+.++++|+|+.. .......+. ..++.|..+|.+.+.+.+..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~--~~~l~~~~~~~~~g~P~~~D~~~l~~~L~~ 166 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYS--NAKLEKQGLMKRKGFPESYDMPSLLRVLNA 166 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCC--HHHHHHTTCGGGTTSGGGBCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccc--hhhhhhHHHHhhccCcccccHHHHHHHHHh
Confidence 466789999999999999999999999852 35789999999843 333322222 23667899999999999999
Q ss_pred hhcCC-CccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchH----------HhhhcCeEEEEecChhhhhHHhhh
Q 023701 120 LRHGQ-AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR----------VRELMNMKIFVDTDADVRLARRIR 188 (278)
Q Consensus 120 ~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~----------~~~~~d~~I~l~~~~e~~l~R~~~ 188 (278)
+..|. .+..|.|++..+.+.......+.+++++|+||++++.++. +.+.+|.+|||+++.+++++|+++
T Consensus 167 L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~l~~~~D~~I~Vda~~d~~~~R~i~ 246 (321)
T 3tqc_A 167 IKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFDFSLFVDAQAQVIQKWYID 246 (321)
T ss_dssp HHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCCCCGGGGCSEEEEEECCHHHHHHHHHH
T ss_pred hhccccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccchhhhhhhhcCeEEEEECCHHHHHHHHHH
Confidence 99998 8899999999998754444566789999999999997663 888999999999999999999999
Q ss_pred ccccccC---------------CCHHH---HH-HHHhhccccccccccccccccccEEeeCCCCc
Q 023701 189 RDTVEKG---------------RDIAT---VL-DQYSKFVKPAFDDFILPTKKYADIIIPRGGDN 234 (278)
Q Consensus 189 R~~~~~~---------------~~~~~---~~-~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~ 234 (278)
|+...++ .+.++ +. ..|.....|.+.++|.|++..||+||..+.++
T Consensus 247 Rd~~~r~~a~~~~~s~~~~y~~~s~~ea~~~a~~~w~~~~~pn~~~~I~ptr~~Adlil~~g~~~ 311 (321)
T 3tqc_A 247 RVLSFWRTTFKDPHSYFHYLTQMSETEVAAFAKHVWNEINKVNLMENILPYKNRAQLILEKAADH 311 (321)
T ss_dssp HHHHHHHTGGGSTTSTTGGGGGSCHHHHHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEEECTTS
T ss_pred hcchhhhhhccChHHHHHHHhcCCHHHHHHHHHHHHHhccccCHHHhCccCccCceEEEecCCCC
Confidence 9854432 22222 22 34545556889999999999999999988765
No 5
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.90 E-value=6.6e-24 Score=187.04 Aligned_cols=188 Identities=23% Similarity=0.374 Sum_probs=147.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCC----CCEEEEcCCCCCCCCCHHHHHHcccc-CCCCCCcccHHHHHHHHHH
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD----QRVVLVNQDSFYHNLTEQELARVHEY-NFDHPDAFDTEKLLSSMEK 119 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~~----~~~~~i~~D~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~l~~ 119 (278)
..++.+|+|+|+||||||||++.|++.+.+ ..+.++++|.++...+..++ .... .++.+..++.+.+.+.+..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~--~~~~~~~g~~~~~d~~~~~~~L~~ 164 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQR--RNLMHRKGFPESYNRRALMRFVTS 164 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHH--TTCTTCTTSGGGBCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHHH--HHHHHhcCCChHHHHHHHHHHHHH
Confidence 688999999999999999999999999864 35889999988744333322 2211 1355677888889999998
Q ss_pred hhcCCC-ccccccCCcCCcCCCCCccccCCCcEEEEcccccCCc---hHHhhhcCeEEEEecChhhhhHHhhhccc----
Q 023701 120 LRHGQA-VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD---SRVRELMNMKIFVDTDADVRLARRIRRDT---- 191 (278)
Q Consensus 120 ~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d---~~~~~~~d~~I~l~~~~e~~l~R~~~R~~---- 191 (278)
+..+.. ...|.|+.+..++...++..+.+++++|+||++++.+ ..+.+.+|.+|||+++.+.+.+|+++|..
T Consensus 165 l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd 244 (312)
T 3aez_A 165 VKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTLMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRT 244 (312)
T ss_dssp HHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSCCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred hCCCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchHHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHh
Confidence 885543 6678999999988776667788999999999999964 67888999999999999999999888832
Q ss_pred -cc----------cCCCHHHHH----HHHhhccccccccccccccccccEEeeCCCCc
Q 023701 192 -VE----------KGRDIATVL----DQYSKFVKPAFDDFILPTKKYADIIIPRGGDN 234 (278)
Q Consensus 192 -~~----------~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~ 234 (278)
.. .+.+.++.. .+|.....|.+.+|+.|++..||+||++++++
T Consensus 245 ~~~r~~~~~~~~~~g~s~e~a~~~v~~~~~~~~~p~~~~~i~p~~~~ADlii~~~~~~ 302 (312)
T 3aez_A 245 TAFADPESHFHHYAAFSDSQAVVAAREIWRTINRPNLVENILPTRPRATLVLRKDADH 302 (312)
T ss_dssp TGGGSTTSTTGGGTTCCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECTTS
T ss_pred ccccCcchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHhccCCCCCCeEEEecCCCC
Confidence 11 244555544 44556678999999999999999999988654
No 6
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.90 E-value=1.2e-24 Score=191.84 Aligned_cols=187 Identities=25% Similarity=0.405 Sum_probs=141.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhC--C--CCEEEEcCCCCCCCCCHHHHHHccc-cCCCCCCcccHHHHHHHHHHh
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLH--D--QRVVLVNQDSFYHNLTEQELARVHE-YNFDHPDAFDTEKLLSSMEKL 120 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~--~--~~~~~i~~D~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~l~~~ 120 (278)
.++.+|+|+|++|||||||++.|++.+. + -.+.++++|+++.. .......+- ..++.+..++...+...+..+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~--~~~~~~~~~vq~~~~~~~~~~~~~~~~~~~l 155 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHP--NQVLKERGLMKKKGFPESYDMHRLVKFVSDL 155 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCC--HHHHHHHTCTTCTTSGGGBCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCc--HHHHHhCCEeecCCCCCCccHHHHHHHHHHH
Confidence 7889999999999999999999999875 2 23788899987742 222222111 124445677888888888888
Q ss_pred hcCCC-ccccccCCcCCcCCCCCccccCCCcEEEEcccccCCc----------hHHhhhcCeEEEEecChhhhhHHhhhc
Q 023701 121 RHGQA-VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD----------SRVRELMNMKIFVDTDADVRLARRIRR 189 (278)
Q Consensus 121 ~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d----------~~~~~~~d~~I~l~~~~e~~l~R~~~R 189 (278)
..+.. +..|.|+.....+.......+.+++++|+||++++.+ ..+.+.+|.+|||+++.+++++|+++|
T Consensus 156 ~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~ivIlEG~~l~~~~~~~~~~~~~~~~~~~~D~~i~V~~~~~~~~~R~~~R 235 (308)
T 1sq5_A 156 KSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINR 235 (308)
T ss_dssp TTTCSCEEECCEETTTTEECTTCCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEECCHHHHHHHHHHH
T ss_pred hCCCCceecccccccccCcccccceecCCCCEEEECchhhCCCccccccccchHHHHHhCCEEEEEECCHHHHHHHHHHH
Confidence 87776 8889999888877544344456778999999999876 267889999999999999999999998
Q ss_pred cccc---------------cCCCHHH----HHHHHhhccccccccccccccccccEEeeCCCCc
Q 023701 190 DTVE---------------KGRDIAT----VLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDN 234 (278)
Q Consensus 190 ~~~~---------------~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~ 234 (278)
+... ++.+.++ +..+|.....|.+..|+.|++..||+||+|+++.
T Consensus 236 ~~~~r~~~~r~~~~~~~~~~g~s~e~a~~~i~~q~~~~~~~~~~~~i~~~~~~AD~vI~n~~~~ 299 (308)
T 1sq5_A 236 FLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILTKSANH 299 (308)
T ss_dssp HHHHHHTTTTCTTSTTHHHHTSCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECGGG
T ss_pred HHHHHHhhccCCchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHHcccccccCcEEEEeCCCC
Confidence 6211 2445554 3345555677889999999999999999998654
No 7
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=99.88 E-value=3e-23 Score=181.22 Aligned_cols=185 Identities=17% Similarity=0.205 Sum_probs=135.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEcCCCCCCC-CCHHHH-----HHcc--ccCCCCCCcccHHHHHHH
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSFYHN-LTEQEL-----ARVH--EYNFDHPDAFDTEKLLSS 116 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~l~~--~~~~~i~~D~~~~~-~~~~~~-----~~~~--~~~~~~~~~~d~~~~~~~ 116 (278)
++.+|+|+|++||||||+++.|++.++. ..+.++++|+||+. ...... ...+ .+.+-.++.++.+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r~~~~~~~~~~~~~~~~g~~~~~~fg~~~~d~~~l~~~ 83 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKELERV 83 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhcCCHHHhhhhhhhhhhccCcCcCCCChhhhcHHHHHHH
Confidence 5678999999999999999999998741 23799999999963 332211 1222 233333788898888888
Q ss_pred HHHhhcCCCccccccCC-----cCCcCCCCCc---ccc-CCCcEEEEcccccC---CchHHhhhcCeEEEEecChhhhhH
Q 023701 117 MEKLRHGQAVDIPNYDF-----KSYKNNVFPA---RRV-NPSDVILLEGILVF---HDSRVRELMNMKIFVDTDADVRLA 184 (278)
Q Consensus 117 l~~~~~~~~i~~~~~~~-----~~~~~~~~~~---~~~-~~~~iiiidg~~~~---~d~~~~~~~d~~I~l~~~~e~~l~ 184 (278)
+..+..++.+..|.|++ ..+.+..... ..+ .+.+++|+||++.+ .+..+.+.+|++|||+++.+++++
T Consensus 84 l~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~~~~~v~~~~D~~IfV~a~~~~rl~ 163 (290)
T 1a7j_A 84 FREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVINLEWI 163 (290)
T ss_dssp HHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSCBCGGGCSEEEEEEECHHHHHH
T ss_pred HHHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEecccccccchHhHHHhCCEEEEEECCHHHHHH
Confidence 88888777777777743 1111111111 123 35789999999987 345678889999999999999999
Q ss_pred HhhhccccccCCCHHHHHHHHhhccccccccccccccccccE------EeeCCC
Q 023701 185 RRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADI------IIPRGG 232 (278)
Q Consensus 185 R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~------iI~n~~ 232 (278)
|+++|+...+|.+.++..+.+..+ .+.|..|+.|.+..||+ +|+|++
T Consensus 164 Rrl~Rd~~~RG~s~e~v~~~i~~r-~~~~~r~i~p~~~~AD~~~~~~~vIDns~ 216 (290)
T 1a7j_A 164 QKIHRDRATRGYTTEAVTDVILRR-MHAYVHCIVPQFSQTDINFQRVPVVDTSN 216 (290)
T ss_dssp HHHHHTSSSCCSCCCCHHHHHHHH-HHHHHHHTGGGGGTCSEEEEEEESSCCSC
T ss_pred HHhhhhhhhcCCChHHHHHHHHHh-CccHHHhhhhhhccCCEeeccCceecCCC
Confidence 999998777777888888877776 88899999999999999 788875
No 8
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.87 E-value=7.3e-22 Score=164.26 Aligned_cols=181 Identities=19% Similarity=0.234 Sum_probs=139.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEcCCCCCCCCCHHHHHHccccC-CCCCCcccHHHHHHHHHHhh
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSFYHNLTEQELARVHEYN-FDHPDAFDTEKLLSSMEKLR 121 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~~--~~~~~i~~D~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~l~~~~ 121 (278)
..++.+|+|+||||||||||++.|++.+.+ ....+++.|+++. ........+.+. .+.+..++...+.+.+..+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 96 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL--DNRLLEPRGLLPRKGAPETFDFEGFQRLCHALK 96 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC--CHHHHGGGTCGGGTTSGGGBCHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC--CHHHHHHhcccccCCCCchhhHHHHHHHHHHHh
Confidence 467899999999999999999999999864 2478899998773 333332222221 23456788888888888888
Q ss_pred cCCCccccccCCcCCcCCCCCccccCC-CcEEEEcccccCCch----HHhhhcCeEEEEecChhhhhHHhhhccccccCC
Q 023701 122 HGQAVDIPNYDFKSYKNNVFPARRVNP-SDVILLEGILVFHDS----RVRELMNMKIFVDTDADVRLARRIRRDTVEKGR 196 (278)
Q Consensus 122 ~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~iiiidg~~~~~d~----~~~~~~d~~I~l~~~~e~~l~R~~~R~~~~~~~ 196 (278)
.+..+..|.++......... ...+.. .+++++||++.++++ .+.+.+|.+|||+++.+.+++|+++|. ..++.
T Consensus 97 ~~~~i~~p~~d~~~~~~~g~-~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~~~~R~~~R~-~~~g~ 174 (208)
T 3c8u_A 97 HQERVIYPLFDRARDIAIAG-AAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLEARLVQRW-LDHGL 174 (208)
T ss_dssp HCSCEEEEEEETTTTEEEEE-EEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHHHHHHHHHHH-HHTTC
T ss_pred cCCceecccCCccccCCCCC-ceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHHHHHHHHHHH-HhcCC
Confidence 88888888888877655332 233444 489999999986654 456889999999999999999999995 34578
Q ss_pred CHHHHHHHHhhccccccccccccccccccEEeeC
Q 023701 197 DIATVLDQYSKFVKPAFDDFILPTKKYADIIIPR 230 (278)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n 230 (278)
+.++..+.+.....+.+ +++.|.+..||+||+.
T Consensus 175 t~~~~~~~~~~~~~~~~-~~i~~~~~~aD~vi~~ 207 (208)
T 3c8u_A 175 NHDAAVARAQGNDLANA-RAIEAARLPADLTWPQ 207 (208)
T ss_dssp CHHHHHHHHHTHHHHHH-HHHHTTBCCCSEEEC-
T ss_pred CHHHHHHHHHhccHHHH-HHHHhCCCCCCEEeeC
Confidence 88998888876677766 7999999999999964
No 9
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.84 E-value=3e-21 Score=168.34 Aligned_cols=187 Identities=18% Similarity=0.227 Sum_probs=133.5
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCC----EEEE-cCCCCCCCCCHHHHHHcc------ccCCCCCCcccHHH
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQR----VVLV-NQDSFYHNLTEQELARVH------EYNFDHPDAFDTEK 112 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~----~~~i-~~D~~~~~~~~~~~~~~~------~~~~~~~~~~d~~~ 112 (278)
...++.+|+|+|++||||||+++.|++.+.+.+ ...+ ++|+||...+...+..++ ...++.|+++|.+.
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~ 106 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKL 106 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHH
Confidence 356789999999999999999999999986422 4445 999999654333322222 11245688999999
Q ss_pred HHHHHHHhhcC------CCccccccCCcC----CcCCCCC-ccccCCCcEEEEcccccCCchHH----------------
Q 023701 113 LLSSMEKLRHG------QAVDIPNYDFKS----YKNNVFP-ARRVNPSDVILLEGILVFHDSRV---------------- 165 (278)
Q Consensus 113 ~~~~l~~~~~~------~~i~~~~~~~~~----~~~~~~~-~~~~~~~~iiiidg~~~~~d~~~---------------- 165 (278)
+.+.+..+..+ ..+..|.|++.. +++.... ...+ +++++|+||+++++++..
T Consensus 107 l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~-~~~IlIlEG~~~~ld~~~~~~~~~~~~~~~l~~~ 185 (290)
T 1odf_A 107 LQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL-PVDIFILEGWFLGFNPILQGIENNDLLTGDMVDV 185 (290)
T ss_dssp HHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES-SCSEEEEEESSTTCCCCCSCTTTCSSSCTTHHHH
T ss_pred HHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc-CCCEEEEeCccccCCccchhhhhcccchhhHHHH
Confidence 99999999887 456778888877 6665432 2344 899999999998777642
Q ss_pred -----------hhhcCeE---EEEecChhhhhHH-hhhc--c-cccc--CCCHHHHHHHHhhcccccccccccccc----
Q 023701 166 -----------RELMNMK---IFVDTDADVRLAR-RIRR--D-TVEK--GRDIATVLDQYSKFVKPAFDDFILPTK---- 221 (278)
Q Consensus 166 -----------~~~~d~~---I~l~~~~e~~l~R-~~~R--~-~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~---- 221 (278)
++.+|+. |||+++.+.++.| +++| + ...+ |.+.++. .+|...++|.|+.|+.|..
T Consensus 186 n~~l~~y~~~l~~~~D~~d~~I~vd~~~~~~i~rWRi~re~~l~~~r~~g~s~e~v-~~~~~~~~p~y~~~~~~~~~~~~ 264 (290)
T 1odf_A 186 NAKLFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQV-HAFVDRYMPSYKLYLNDFVRSES 264 (290)
T ss_dssp HHHHHHHHHHTTTCTTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSCSCCHHHH-HHHHHTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhhhhhhcceEEEECCCHHHHHHHHHHHHHHHHHhccCCCCHHHH-HHHHHHhcchHHHHhHHHHHhcc
Confidence 3345666 9999977777766 6666 2 1223 7788885 6777888898887776532
Q ss_pred --ccccEEeeCCC
Q 023701 222 --KYADIIIPRGG 232 (278)
Q Consensus 222 --~~aD~iI~n~~ 232 (278)
..||++|..+.
T Consensus 265 ~~~~adlvl~~~~ 277 (290)
T 1odf_A 265 LGSIATLTLGIDS 277 (290)
T ss_dssp SSSSEEEEEEECT
T ss_pred CCCCCCEEEEECC
Confidence 26999887654
No 10
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=99.81 E-value=2.4e-20 Score=165.24 Aligned_cols=151 Identities=16% Similarity=0.178 Sum_probs=117.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHcc-----ccCCCCCCcccHHHHHHHHHHhhcC----------------------------
Q 023701 77 VVLVNQDSFYHNLTEQELARVH-----EYNFDHPDAFDTEKLLSSMEKLRHG---------------------------- 123 (278)
Q Consensus 77 ~~~i~~D~~~~~~~~~~~~~~~-----~~~~~~~~~~d~~~~~~~l~~~~~~---------------------------- 123 (278)
+.++++|+||. +...+..++ ...++.|.+||...+.+.++.+..+
T Consensus 156 v~vi~mDgFh~--~~~~L~~~~d~~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 233 (359)
T 2ga8_A 156 AQIVPMDGFHL--SRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQT 233 (359)
T ss_dssp EEEEEGGGGBC--CHHHHTTSSSTHHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETT
T ss_pred EEEEecCcCCC--CHHHHhhccCcchhhccCCCCccccHHHHHHHHHHHHcCCccccccccccccccccccccccccccc
Confidence 57889999994 444433322 4467889999999999988888766
Q ss_pred -CCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCch----HHhhhcC-----eEEEEecChhhhhHHhhhccccc
Q 023701 124 -QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDS----RVRELMN-----MKIFVDTDADVRLARRIRRDTVE 193 (278)
Q Consensus 124 -~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~----~~~~~~d-----~~I~l~~~~e~~l~R~~~R~~~~ 193 (278)
..+..|.|++....+..........++++|+||.+++++. .+.+.+| ++|||+++.+++++|+++|+. .
T Consensus 234 ~~~v~~P~yD~~~~d~~~~~~~v~~~~~iVIvEGi~LL~e~~~w~~l~~l~D~~~~~~~i~Vdad~ev~~~Rli~R~~-~ 312 (359)
T 2ga8_A 234 IPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHL-Q 312 (359)
T ss_dssp CCCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSHHHHHHHHHHHTTTCEEEEEEECCHHHHHHHHHHHHH-H
T ss_pred CceEeeccccCccCCCCCCceEecCCCCEEEEEeehhhccccchhhhhhccccccceEEEEEECCHHHHHHHHHHhhh-c
Confidence 4578899999988876543333344789999997777663 4567898 999999999999999999973 3
Q ss_pred cCC--CHHHHHHHHhhccccccccccccccccccEEeeCC
Q 023701 194 KGR--DIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRG 231 (278)
Q Consensus 194 ~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~ 231 (278)
.|. +.++...++.....|.. ++|.|++..||+|+...
T Consensus 313 ~Gl~~s~eea~~r~~~~d~pN~-~~I~~~~~~ad~i~~~~ 351 (359)
T 2ga8_A 313 SGLVTTIAEGREKFRSNDLLNG-RDIDNHLIKVDNIVHIR 351 (359)
T ss_dssp TTSCSSHHHHHHHHHHCTTTSS-HHHHHTBCCCTTEEEEE
T ss_pred cCCCCCHHHHHHHHHhcCchhh-HhHhhcCCCCCEEEEec
Confidence 466 78888888888888876 89999999999887543
No 11
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=99.80 E-value=1.9e-20 Score=154.94 Aligned_cols=174 Identities=20% Similarity=0.337 Sum_probs=103.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC--CEEEEcCCCCCCCCCHHHHHHcccc----CCCCCCcccHHHHHHHH-
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDSFYHNLTEQELARVHEY----NFDHPDAFDTEKLLSSM- 117 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~--~~~~i~~D~~~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~l- 117 (278)
..++.+|+|+|++||||||+++.|++.+.+. .+.+++.|.++.... .....+.. .+ +..+|.+.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~--~~~~~~~~~~~~~~--~~~~d~~~l~~~v~ 94 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERA--KRYHTGNEEWFEYY--YLQWDVEWLTHQLF 94 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHH--HHSSSSSCHHHHHH--HTSSCHHHHHHHTG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHH--HHHhcCCCCccCCC--ccccCHHHHHHHHH
Confidence 5678999999999999999999999987432 356777888774321 10000000 00 2457777776654
Q ss_pred HHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhccccccCCC
Q 023701 118 EKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRD 197 (278)
Q Consensus 118 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~l~R~~~R~~~~~~~~ 197 (278)
..+..+..+..|.|++....... ........+++|+||++.+ .+.+.+.+|.+|||++|.+++++|+.+|+
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vIveg~~l~-~~~~~~~~d~~i~v~~~~~~~~~R~~~R~------- 165 (201)
T 1rz3_A 95 RQLKASHQLTLPFYDHETDTHSK-RTVYLSDSDMIMIEGVFLQ-RKEWRPFFDFVVYLDCPREIRFARENDQV------- 165 (201)
T ss_dssp GGTTTCSEEEEEEEETTTTEEEE-EEEECTTCSEEEEEETTTT-STTTGGGCSEEEEECCC-------------------
T ss_pred HHHhcCCccccCceeccCCCCCC-ceEEeCCCcEEEEechhhc-cHHHHhhcCEEEEEeCCHHHHHHHHhcCC-------
Confidence 55555556666777766332211 1223456789999999988 46778889999999999999999999996
Q ss_pred HHHHHHHHhhccccccccccccc--cccccEEeeCCC
Q 023701 198 IATVLDQYSKFVKPAFDDFILPT--KKYADIIIPRGG 232 (278)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~~~--~~~aD~iI~n~~ 232 (278)
++....+.....+.+..|+.+. +..||+||+|++
T Consensus 166 -~~~~~~~~~~~~~~~~~y~~~~~~~~~AD~vI~N~~ 201 (201)
T 1rz3_A 166 -KQNIQKFINRYWKAEDYYLETEEPIKRADVVFDMTS 201 (201)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHCHHHHCSEEEC---
T ss_pred -HHHHHHHHhheeHHHHHHhCCCCcHhhCcEEecCCC
Confidence 2223333333345556665544 578999999864
No 12
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.76 E-value=1e-18 Score=144.82 Aligned_cols=182 Identities=17% Similarity=0.281 Sum_probs=109.8
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHcccc---CCCCCCcccHHHHHHHHHHh
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEY---NFDHPDAFDTEKLLSSMEKL 120 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~l~~~ 120 (278)
...++.+|+|+|++||||||+++.|++.+. ++.++++|+++.... .. ..... .++.+..++...+.+.+..+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~--~~~~i~~D~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 91 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP--NCSVISQDDFFKPES--EI-ETDKNGFLQYDVLEALNMEKMMSAISCW 91 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST--TEEEEEGGGGBCCGG--GS-CBCTTSCBCCSSGGGBCHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC--CcEEEeCCccccCHh--Hh-hccccCCChhHHHHHhHHHHHHHHHHHH
Confidence 678899999999999999999999999873 699999999875321 11 11111 11223346666666655544
Q ss_pred hcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhccccccCCCHHH
Q 023701 121 RHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIAT 200 (278)
Q Consensus 121 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~l~R~~~R~~~~~~~~~~~ 200 (278)
.... ..|..... .....+.+++|+||++.+..+.+.+.+|.+||++++.+++++|+.+|. .........
T Consensus 92 l~~~--~~~~~~~~--------~~~~~~~~~vi~eg~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~-~~~e~~~~~ 160 (207)
T 2qt1_A 92 MESA--RHSVVSTD--------QESAEEIPILIIEGFLLFNYKPLDTIWNRSYFLTIPYEECKRRRSTRV-YQPPDSPGY 160 (207)
T ss_dssp HHHH--TTSSCCC-------------CCCCEEEEECTTCTTCGGGTTTCSEEEEEECCHHHHHHHHHHSC-CSSCCCTTH
T ss_pred HhCC--CCCCcCCC--------eeecCCCCEEEEeehHHcCcHHHHHhcCeeEEEECCHHHHHHHHHHcC-CCccchHHH
Confidence 3310 01211111 111345678999999887556677889999999999999999998885 222221111
Q ss_pred HHHHHhhccccccccccccccccccEE--eeCCCCcHHHHHHHHHHHHHhh
Q 023701 201 VLDQYSKFVKPAFDDFILPTKKYADII--IPRGGDNHVAIDLIVQHIRTKL 249 (278)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~~~~aD~i--I~n~~~~~~~~~~i~~~i~~~l 249 (278)
+ ....++.|..++..+...+|.+ |+|+.+ ++++.++|.+.+
T Consensus 161 ~----~~~~~~~~~~~~~~~~~~~~~v~~Id~~~~----~eev~~~I~~~l 203 (207)
T 2qt1_A 161 F----DGHVWPMYLKYRQEMQDITWEVVYLDGTKS----EEDLFLQVYEDL 203 (207)
T ss_dssp H----HHTHHHHHHHHHHHGGGCSSCCEEEETTSC----HHHHHHHHHHHH
T ss_pred H----HHHHhHHHHHHHHHHHhcCCeEEEecCCCC----HHHHHHHHHHHH
Confidence 2 1122223333333334556654 777753 455555555544
No 13
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.74 E-value=2.2e-18 Score=141.38 Aligned_cols=157 Identities=20% Similarity=0.253 Sum_probs=101.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHH----HHHccccCCCCCCcccHHHHHHHH---
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQE----LARVHEYNFDHPDAFDTEKLLSSM--- 117 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~----~~~~~~~~~~~~~~~d~~~~~~~l--- 117 (278)
..-..+|+|+|++||||||+++.|++.+ |+.++++|.+++.+.... ...++...+. ++.+|.+.+.+.+
T Consensus 9 ~~~~~iIgltG~~GSGKSTva~~L~~~l---g~~vid~D~~~~~~~~~~~~~i~~~fG~~~~~-~g~ldr~~L~~~vF~~ 84 (192)
T 2grj_A 9 HHHHMVIGVTGKIGTGKSTVCEILKNKY---GAHVVNVDRIGHEVLEEVKEKLVELFGGSVLE-DGKVNRKKLAGIVFES 84 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHH---CCEEEEHHHHHHHHHHHTHHHHHHHHCGGGBS-SSSBCHHHHHHHHTTC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhc---CCEEEECcHHHHHHHHHHHHHHHHHhChhhcC-CCCcCHHHHHHHHhCC
Confidence 4556899999999999999999999987 699999999886654431 2345555565 6667766554321
Q ss_pred -HHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhccccccCC
Q 023701 118 -EKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGR 196 (278)
Q Consensus 118 -~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~l~R~~~R~~~~~~~ 196 (278)
+.......+..|.+........ .....++++|+++.+ +..+.+.+|.+|||++|.+++++|++.
T Consensus 85 ~~~~~~l~~i~hP~i~~~~~~~~------~~~~~~vv~d~pll~-e~~~~~~~d~vi~v~a~~e~r~~Rli~-------- 149 (192)
T 2grj_A 85 RENLKKLELLVHPLMKKRVQEII------NKTSGLIVIEAALLK-RMGLDQLCDHVITVVASRETILKRNRE-------- 149 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------HTCCEEEEEECTTTT-TTTGGGGCSEEEEEECCHHHHHHHCSS--------
T ss_pred HHHHHHHHhhhCHHHHHHHHHHH------HHcCCEEEEEEecee-ecChHHhCCEEEEEECCHHHHHHHHHH--------
Confidence 0000000112243322221110 011468999999877 456778899999999999999999821
Q ss_pred CHHHHHHHHhhccccccccccccccccccEEeeCCCCc
Q 023701 197 DIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDN 234 (278)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~ 234 (278)
.++.. ++.+.+..||++|+|+++.
T Consensus 150 ------~q~~~--------~~~~~~~~AD~vI~n~~~~ 173 (192)
T 2grj_A 150 ------ADRRL--------KFQEDIVPQGIVVANNSTL 173 (192)
T ss_dssp ------HHHHH--------TTCTTCCCCSEEEECSSCH
T ss_pred ------hcCCc--------hhhhHHhcCCEEEECCCCH
Confidence 11111 1223468899999998643
No 14
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.73 E-value=5.5e-18 Score=140.30 Aligned_cols=163 Identities=20% Similarity=0.273 Sum_probs=111.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCH------HH-HHHccccCCCCCCcccHHHHHHH--
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTE------QE-LARVHEYNFDHPDAFDTEKLLSS-- 116 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~------~~-~~~~~~~~~~~~~~~d~~~~~~~-- 116 (278)
.-+.-|||+|.+||||||+++.|++ + |+.+++.|...+.+.. .. ...++...|...+.+|...+.+.
T Consensus 7 ~~~~~iglTGgigsGKStv~~~l~~-~---g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF 82 (210)
T 4i1u_A 7 HHMYAIGLTGGIGSGKTTVADLFAA-R---GASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIF 82 (210)
T ss_dssp CSCCEEEEECCTTSCHHHHHHHHHH-T---TCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHH
T ss_pred cceeEEEEECCCCCCHHHHHHHHHH-C---CCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHh
Confidence 4456799999999999999999999 4 7999999985543221 12 24566666766667776554433
Q ss_pred --------HHHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCc-hHHhhhcCeEEEEecChhhhhHHhh
Q 023701 117 --------MEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD-SRVRELMNMKIFVDTDADVRLARRI 187 (278)
Q Consensus 117 --------l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d-~~~~~~~d~~I~l~~~~e~~l~R~~ 187 (278)
|+.+.+ |.......... .....+++++|.|+.+ + ..+.+.+|.+|||++|.+++++|+.
T Consensus 83 ~d~~~~~~L~~i~H------P~I~~~~~~~~-----~~~~~~~vv~d~pLL~-E~~~~~~~~D~vi~V~ap~e~r~~Rl~ 150 (210)
T 4i1u_A 83 SDEDARRRLEAITH------PLIRAETEREA-----RDAQGPYVIFVVPLLV-ESRNWKARCDRVLVVDCPVDTQIARVM 150 (210)
T ss_dssp HCHHHHHHHHHHHH------HHHHHHHHHHH-----HTCCSSSEEEECTTCT-TCHHHHHHCSEEEEEECCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhh------HHHHHHHHHHH-----HhcCCCEEEEEEeccc-ccCCccccCCeEEEEECCHHHHHHHHH
Confidence 333333 43322211111 1123468999999887 6 7888899999999999999999999
Q ss_pred hccccccCCCHHHHHHHHhhccccccccccccccccccEEeeCC-CCc
Q 023701 188 RRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRG-GDN 234 (278)
Q Consensus 188 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~-~~~ 234 (278)
+|+ +.+.++....+... .+.. +....||++|+|+ ++.
T Consensus 151 ~Rd----g~s~eea~~ri~~Q-~~~e-----ek~~~AD~VIdN~~gsl 188 (210)
T 4i1u_A 151 QRN----GFTREQVEAIIARQ-ATRE-----ARLAAADDVIVNDAATP 188 (210)
T ss_dssp HHH----CCCHHHHHHHHHHS-CCHH-----HHHHTCSEEEECSSCCH
T ss_pred hcC----CCCHHHHHHHHHHc-CChH-----HHHHhCCEEEECCCCCH
Confidence 997 44556665555443 2332 2357899999998 653
No 15
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.67 E-value=3.5e-17 Score=135.35 Aligned_cols=176 Identities=18% Similarity=0.280 Sum_probs=98.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHH---H----HHHccccCCCCCCcccHHHHH------
Q 023701 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQ---E----LARVHEYNFDHPDAFDTEKLL------ 114 (278)
Q Consensus 48 ~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~---~----~~~~~~~~~~~~~~~d~~~~~------ 114 (278)
+.+|+|+|++||||||+++.|++ + |..+++.|.+++..... . ...++...+...+.++...+.
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~-l---g~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~ 77 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD-L---GVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNH 77 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT-T---TCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-C---CCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCC
Confidence 46899999999999999999998 4 68888988876433111 1 112233333222223332221
Q ss_pred ----HHHHHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhcc
Q 023701 115 ----SSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRD 190 (278)
Q Consensus 115 ----~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~l~R~~~R~ 190 (278)
..+..+.+ |.+....... ........+|+++++.+. ..+.+.+|.+|||+++.+++++|+.+|+
T Consensus 78 ~~~~~~l~~~~~------p~v~~~~~~~-----~~~~~~~~vv~~~~~l~e-~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 145 (206)
T 1jjv_A 78 DEDKLWLNNLLH------PAIRERMKQK-----LAEQTAPYTLFVVPLLIE-NKLTALCDRILVVDVSPQTQLARSAQRD 145 (206)
T ss_dssp HHHHHHHHHHHH------HHHHHHHHHH-----HHTCCSSEEEEECTTTTT-TTCGGGCSEEEEEECCHHHHHHHHC---
T ss_pred HHHHHHHHhccC------HHHHHHHHHH-----HHhcCCCEEEEEechhhh-cCcHhhCCEEEEEECCHHHHHHHHHHcC
Confidence 11111111 2221111110 000124478899987663 3366789999999999999999999986
Q ss_pred ccccCCCHHHHHHHHhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHHHhh
Q 023701 191 TVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKL 249 (278)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~i~~~i~~~l 249 (278)
+.+.+.+...+... .+. .+....||++|+|+++.+..++.+.++|.+.+
T Consensus 146 ----~~~~e~~~~r~~~q-~~~-----~~~~~~ad~vIdn~~~~~~~~~~~~~~i~~~~ 194 (206)
T 1jjv_A 146 ----NNNFEQIQRIMNSQ-VSQ-----QERLKWADDVINNDAELAQNLPHLQQKVLELH 194 (206)
T ss_dssp ------CHHHHHHHHHHS-CCH-----HHHHHHCSEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHhc-CCh-----HHHHHhCCEEEECCCCccccHHHHHHHHHHHH
Confidence 33455555555432 222 12245799999998754433445665555544
No 16
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.67 E-value=9.8e-17 Score=139.34 Aligned_cols=180 Identities=12% Similarity=0.159 Sum_probs=106.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC-----HH-H-HHHccccCCCCCCcccHHHHHH--
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLT-----EQ-E-LARVHEYNFDHPDAFDTEKLLS-- 115 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~-----~~-~-~~~~~~~~~~~~~~~d~~~~~~-- 115 (278)
..++++|+|+|++||||||+|+.|++ + ++.+++.|.+++... .. . ...++...+...+.+|...+..
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La~-l---g~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~v 147 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLKN-L---GAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRV 147 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHHH-H---TCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH-C---CCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHH
Confidence 35678999999999999999999995 4 688999988743211 11 1 1233333333334455443321
Q ss_pred --------HHHHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhh
Q 023701 116 --------SMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRI 187 (278)
Q Consensus 116 --------~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~l~R~~ 187 (278)
.++.+ ..|.+......... ........++|+||++.+ ...+.+.+|.+|||++|.+++++|+.
T Consensus 148 f~~~~~~~~l~~i------~~P~i~~~~~~~~~--~~~~~~~~~vIveg~~l~-~~~~~~~~d~vI~l~a~~ev~~~Rl~ 218 (281)
T 2f6r_A 148 FGNKKQMKILTDI------VWPVIAKLAREEMD--VAVAKGKTLCVIDAAMLL-EAGWQSMVHEVWTVVIPETEAVRRIV 218 (281)
T ss_dssp TTCHHHHHHHHHH------HHHHHHHHHHHHHH--HHHHTTCCEEEEECTTTT-TTTGGGGCSEEEEEECCHHHHHHHHH
T ss_pred hCCHHHHHHhhcc------cChHHHHHHHHHHH--HHhccCCCEEEEEechhh-ccchHHhCCEEEEEcCCHHHHHHHHH
Confidence 11111 11322111111110 011223568999999866 45566789999999999999999999
Q ss_pred hccccccCCCHHHHHHHHhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHHH
Q 023701 188 RRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRT 247 (278)
Q Consensus 188 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~i~~~i~~ 247 (278)
+|+ +.+.+.....+... .+... +...||++|+|+++.+...+.+.+.+..
T Consensus 219 ~R~----g~s~e~~~~ri~~q-~~~~~-----~~~~AD~vIdn~~s~eel~~~I~~~l~~ 268 (281)
T 2f6r_A 219 ERD----GLSEAAAQSRLQSQ-MSGQQ-----LVEQSNVVLSTLWESHVTQSQVEKAWNL 268 (281)
T ss_dssp HHH----CCCHHHHHHHHHTS-CCHHH-----HHHTCSEEEECSSCHHHHHHHHHHHHHH
T ss_pred HcC----CCCHHHHHHHHHHc-CChHh-----hHhhCCEEEECCCCHHHHHHHHHHHHHH
Confidence 986 34556666655543 22211 1246899999986433334444444443
No 17
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=1.8e-16 Score=130.58 Aligned_cols=175 Identities=15% Similarity=0.149 Sum_probs=89.8
Q ss_pred ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHcccc
Q 023701 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEY 100 (278)
Q Consensus 21 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~ 100 (278)
++++|||| ...++.+|+|+|++||||||+++.|++.+ +..+++.|++...........
T Consensus 13 ~~~~~~~~---------------~~~~~~~i~l~G~~GsGKsTl~~~La~~l---~~~~i~~d~~~~~~~g~~i~~---- 70 (199)
T 3vaa_A 13 LGTENLYF---------------QSNAMVRIFLTGYMGAGKTTLGKAFARKL---NVPFIDLDWYIEERFHKTVGE---- 70 (199)
T ss_dssp --------------------------CCCEEEEECCTTSCHHHHHHHHHHHH---TCCEEEHHHHHHHHHTSCHHH----
T ss_pred CCCCceeE---------------ecCCCCEEEEEcCCCCCHHHHHHHHHHHc---CCCEEcchHHHHHHhCCcHHH----
Confidence 57999999 88899999999999999999999999998 477778776541110000000
Q ss_pred CCCCCCcccHHHHHHHHHHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchH---HhhhcCeEEEEec
Q 023701 101 NFDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR---VRELMNMKIFVDT 177 (278)
Q Consensus 101 ~~~~~~~~d~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~---~~~~~d~~I~l~~ 177 (278)
.|.. .....+.+.-..+. ........+++..|........ .....+.+|||++
T Consensus 71 ~~~~---~~~~~~~~~e~~~l---------------------~~l~~~~~~vi~~ggg~~~~~~~~~~l~~~~~vi~L~~ 126 (199)
T 3vaa_A 71 LFTE---RGEAGFRELERNML---------------------HEVAEFENVVISTGGGAPCFYDNMEFMNRTGKTVFLNV 126 (199)
T ss_dssp HHHH---HHHHHHHHHHHHHH---------------------HHHTTCSSEEEECCTTGGGSTTHHHHHHHHSEEEEEEC
T ss_pred HHHh---cChHHHHHHHHHHH---------------------HHHhhcCCcEEECCCcEEccHHHHHHHHcCCEEEEEEC
Confidence 0000 00000111000000 0011223445554543332332 2234689999999
Q ss_pred ChhhhhHHhh-hccccc--cCCCHH---HHHHHHhhccccccccccccccccccEEeeCCCC-cHHHHHHHHHHHHHhh
Q 023701 178 DADVRLARRI-RRDTVE--KGRDIA---TVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGD-NHVAIDLIVQHIRTKL 249 (278)
Q Consensus 178 ~~e~~l~R~~-~R~~~~--~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~-~~~~~~~i~~~i~~~l 249 (278)
+.+++.+|+. .|.... .+...+ +....+.....+.| .. ||++|++++. .++..+.+++.+...+
T Consensus 127 ~~e~l~~Rl~~~~~~Rp~~~~~~~~~~~~~i~~~~~~r~~~y-------~~-ad~~Idt~~~s~ee~~~~I~~~l~~~l 197 (199)
T 3vaa_A 127 HPDVLFRRLRIAKQQRPILQGKEDDELMDFIIQALEKRAPFY-------TQ-AQYIFNADELEDRWQIESSVQRLQELL 197 (199)
T ss_dssp CHHHHHHHHHHTGGGCGGGTTCCHHHHHHHHHHHHHHHHHHH-------TT-SSEEEECCCCSSHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhcCCCCCCCcCCCChhhHHHHHHHHHHHHHHHH-------hh-CCEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 9999999998 443222 233332 22333333333333 33 9999999873 3456677777776654
No 18
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.63 E-value=3.4e-16 Score=129.09 Aligned_cols=173 Identities=21% Similarity=0.298 Sum_probs=100.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCH---HHH----HHccccCCCCCCcccHHHHHHH-----
Q 023701 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTE---QEL----ARVHEYNFDHPDAFDTEKLLSS----- 116 (278)
Q Consensus 49 ~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~---~~~----~~~~~~~~~~~~~~d~~~~~~~----- 116 (278)
++|+|+|++||||||+++.|++ + ++.+++.|.+++.... ... ..++...|..++.++...+.+.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~---g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~ 77 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-L---GAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDE 77 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-T---TCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-C---CCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCH
Confidence 5799999999999999999999 6 6899999887654321 111 1222222322223443332221
Q ss_pred -----HHHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhccc
Q 023701 117 -----MEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDT 191 (278)
Q Consensus 117 -----l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~l~R~~~R~~ 191 (278)
+..+.. |.+....... ........++|+|++..+ +..+...+|.+|||+++.+++.+|+.+| +
T Consensus 78 ~~~~~l~~l~~------~~v~~~~~~~----~~~~~~~~~vive~~~l~-~~~~~~~~~~~i~l~~~~e~~~~Rl~~R-~ 145 (204)
T 2if2_A 78 EKLRKLEEITH------RALYKEIEKI----TKNLSEDTLFILEASLLV-EKGTYKNYDKLIVVYAPYEVCKERAIKR-G 145 (204)
T ss_dssp HHHHHHHHHHH------HHHTTTHHHH----HHHSCTTCCEEEECSCST-TTTCGGGSSEEEEECCCHHHHHHHHHHT-C
T ss_pred HHHHHHHHhhC------HHHHHHHHHH----HHhccCCCEEEEEccccc-cCCchhhCCEEEEEECCHHHHHHHHHHc-C
Confidence 111111 2111110000 000111167899998766 3455667899999999999999999987 2
Q ss_pred cccCCCHHHHHHHHhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHHHhhcc
Q 023701 192 VEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQ 251 (278)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~i~~~i~~~l~~ 251 (278)
...+.+...+... .+. .++...||++|+|+.+ ++.+.++|.+.+.+
T Consensus 146 ----~~~~~~~~~~~~~-~~~-----~~~~~~ad~vId~~~~----~~~~~~~i~~~l~~ 191 (204)
T 2if2_A 146 ----MSEEDFERRWKKQ-MPI-----EEKVKYADYVIDNSGS----IEETYKQVKKVYEE 191 (204)
T ss_dssp ----CCHHHHHHHHTTS-CCH-----HHHGGGCSEECCCSSC----HHHHHHHHHHHHHT
T ss_pred ----CCHHHHHHHHHhC-CCh-----hHHHhcCCEEEECCCC----HHHHHHHHHHHHHH
Confidence 3444554544432 221 1235678999988743 45555555555543
No 19
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.62 E-value=3.7e-15 Score=127.31 Aligned_cols=100 Identities=14% Similarity=0.110 Sum_probs=57.0
Q ss_pred CCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhcccc-ccCCCHHHHHHHHhhcccccccccccccccccc
Q 023701 147 NPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTV-EKGRDIATVLDQYSKFVKPAFDDFILPTKKYAD 225 (278)
Q Consensus 147 ~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~l~R~~~R~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD 225 (278)
.....++++|..... .+.+..+++|||+++.+++.+|+.++... ..+.+.++..+.+..+........+.|.+..+|
T Consensus 143 a~~~~~V~~gr~~~~--~v~~~~~~~ifl~A~~e~r~~R~~~~l~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d 220 (252)
T 4e22_A 143 REAPGLIADGRDMGT--IVFPDAPVKIFLDASSQERAHRRMLQLQERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAAD 220 (252)
T ss_dssp CCSSCEEEEESSCCC--CCSTTCSEEEEEECCHHHHHHHHHHHHHHHTCCCCHHHHHHHHC------------CCCCCTT
T ss_pred hhCCCEEEEeceece--eecCCCCEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccccchhccCC
Confidence 334557888865442 13344689999999999999998762111 123456677776666666666677788888888
Q ss_pred -EEeeCCCCcH-HHHHHHHHHHHHh
Q 023701 226 -IIIPRGGDNH-VAIDLIVQHIRTK 248 (278)
Q Consensus 226 -~iI~n~~~~~-~~~~~i~~~i~~~ 248 (278)
++|+|++.+. ..++.+++.+...
T Consensus 221 ~~~Idts~~~~eev~~~I~~~i~~~ 245 (252)
T 4e22_A 221 ALVLDSTSMSIEQVIEQALAYAQRI 245 (252)
T ss_dssp EEEEECSSSCHHHHHHHHHHHHHHH
T ss_pred eEEEECcCCCHHHHHHHHHHHHHHH
Confidence 8999887543 3344555544443
No 20
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.61 E-value=9e-16 Score=127.99 Aligned_cols=177 Identities=16% Similarity=0.209 Sum_probs=103.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCH------HH-HHHccccCCCCCCcccHHHHHHHH--
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTE------QE-LARVHEYNFDHPDAFDTEKLLSSM-- 117 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~------~~-~~~~~~~~~~~~~~~d~~~~~~~l-- 117 (278)
++++|+|+|++||||||+++.|++ + +..+++.|.+++.... .. ...++...+...+.++...+.+.+
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-l---g~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~ 78 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-L---GINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFA 78 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-T---TCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-c---CCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhC
Confidence 568999999999999999999998 5 6889999876543221 11 122333334433445544333211
Q ss_pred --------HHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhc
Q 023701 118 --------EKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRR 189 (278)
Q Consensus 118 --------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~l~R~~~R 189 (278)
+.+. .|.+....... .......++++++++... ..+...+|.+|||+++.+++.+|+.+|
T Consensus 79 ~~~~~~~l~~~~------~p~v~~~~~~~-----~~~~~~~~vi~~~~~l~~-~~~~~~~d~vi~l~~~~e~~~~Rl~~R 146 (218)
T 1vht_A 79 NPEEKNWLNALL------HPLIQQETQHQ-----IQQATSPYVLWVVPLLVE-NSLYKKANRVLVVDVSPETQLKRTMQR 146 (218)
T ss_dssp CHHHHHHHHHHH------HHHHHHHHHHH-----HHHCCSSEEEEECTTTTT-TTGGGGCSEEEEEECCHHHHHHHHHHH
T ss_pred CHHHHHHHHHhH------CHHHHHHHHHH-----HHhcCCCEEEEEeeeeec-cCccccCCEEEEEECCHHHHHHHHHHc
Confidence 1111 12221110000 000023467888877653 335677899999999999999999988
Q ss_pred cccccCCCHHHHHHHHhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHHHhh
Q 023701 190 DTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKL 249 (278)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~i~~~i~~~l 249 (278)
++ .+.+.+...+... .+.+. +...||++|+|+++.+...+.+.+.+...+
T Consensus 147 ~~----~~~~~~~~~~~~~-~~~~~-----~~~~ad~vId~~~~~~~~~~~I~~~l~~~~ 196 (218)
T 1vht_A 147 DD----VTREHVEQILAAQ-ATREA-----RLAVADDVIDNNGAPDAIASDVARLHAHYL 196 (218)
T ss_dssp HT----CCHHHHHHHHHHS-CCHHH-----HHHHCSEEEECSSCTTSHHHHHHHHHHHHH
T ss_pred CC----CCHHHHHHHHHhc-CChHH-----HHHhCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence 52 3344444444432 22221 245689999998744445555555555443
No 21
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.60 E-value=1e-15 Score=136.50 Aligned_cols=161 Identities=14% Similarity=0.136 Sum_probs=107.4
Q ss_pred hhccCCc-eeeeCCc-cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC----------
Q 023701 8 DMIEASS-GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------- 75 (278)
Q Consensus 8 ~~~~~~~-~~~~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~---------- 75 (278)
.||+-++ ++.|++. +|+|||| .+.++.+++|.||||||||||+++|++.+.+.
T Consensus 3 ~~l~i~~ls~~y~~~~~L~~vsl---------------~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~ 67 (359)
T 3fvq_A 3 AALHIGHLSKSFQNTPVLNDISL---------------SLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKT 67 (359)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEE---------------EECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEE
T ss_pred cEEEEEeEEEEECCEEEEEeeEE---------------EEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 3677777 9999985 6999999 99999999999999999999999999987641
Q ss_pred -------------CEEEEcCCC-CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCcCC
Q 023701 76 -------------RVVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNN 139 (278)
Q Consensus 76 -------------~~~~i~~D~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~ 139 (278)
++.++.++. ++..++..++..++......+..-..+...+.++.+...... ....++.+..+|.
T Consensus 68 i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRV 147 (359)
T 3fvq_A 68 IFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRA 147 (359)
T ss_dssp EESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHH
T ss_pred CcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHH
Confidence 233444442 334455555555433221112222234455666665543322 2235666666777
Q ss_pred CCCccccCCCcEEEEcccccCCchHHhhh-----------cC-eEEEEecChhhhh
Q 023701 140 VFPARRVNPSDVILLEGILVFHDSRVREL-----------MN-MKIFVDTDADVRL 183 (278)
Q Consensus 140 ~~~~~~~~~~~iiiidg~~~~~d~~~~~~-----------~d-~~I~l~~~~e~~l 183 (278)
..++..+.+++++++|+|++.+|+..+.. .+ .+||++.+.+...
T Consensus 148 alArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~ 203 (359)
T 3fvq_A 148 ALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEAL 203 (359)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHH
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 67777889999999999999999743311 12 5677777766544
No 22
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.57 E-value=4.5e-15 Score=121.91 Aligned_cols=174 Identities=18% Similarity=0.263 Sum_probs=101.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC-H--HHH-HHccccCCCCCCcccHHHHHHH----
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLT-E--QEL-ARVHEYNFDHPDAFDTEKLLSS---- 116 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~-~--~~~-~~~~~~~~~~~~~~d~~~~~~~---- 116 (278)
..++.+|+|+|++||||||+++.|++. ++.+++.|.+++... . ... ..+ ...|. .+.++...+.+.
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~----g~~~id~d~~~~~~~~~~~~~i~~~~-~~~~~-~g~i~~~~l~~~~~~~ 78 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW----GYPVLDLDALAARARENKEEELKRLF-PEAVV-GGRLDRRALARLVFSD 78 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT----TCCEEEHHHHHHHHHHHTHHHHHHHC-GGGEE-TTEECHHHHHHHHTTS
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC----CCEEEcccHHHHHhcCChHHHHHHHH-HHHHh-CCCcCHHHHHHHHhCC
Confidence 356789999999999999999999996 588999998774432 1 111 111 11122 233444333221
Q ss_pred ------HHHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhcc
Q 023701 117 ------MEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRD 190 (278)
Q Consensus 117 ------l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~l~R~~~R~ 190 (278)
++.+.+ |.+. ..... ........++++|+++.+ +..+.+.+|.+|||+++.+++++|+.+|+
T Consensus 79 ~~~~~~l~~~~~------~~i~---~~~i~--~~~~~g~~~vi~d~~~l~-~~~~~~~~d~~i~l~~~~e~~~~R~~~R~ 146 (203)
T 1uf9_A 79 PERLKALEAVVH------PEVR---RLLME--ELSRLEAPLVFLEIPLLF-EKGWEGRLHGTLLVAAPLEERVRRVMARS 146 (203)
T ss_dssp HHHHHHHHHHHH------HHHH---HHHHH--HHHTCCCSEEEEECTTTT-TTTCGGGSSEEEEECCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhC------hHHH---HHHHH--HhhhcCCCEEEEEeccee-ccCchhhCCEEEEEECCHHHHHHHHHHcC
Confidence 111111 1111 00000 001122578999998765 34455678999999999999999999885
Q ss_pred ccccCCCHHHHHHHHhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHHHhhc
Q 023701 191 TVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLG 250 (278)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~i~~~i~~~l~ 250 (278)
+ ...+.+...+.. ..+.+ ++...||++|+|++ .++++.+.|...+.
T Consensus 147 ~----~~~~~~~~~i~~-~~~~~-----~~~~~ad~vId~~~----~~~~~~~~i~~~~~ 192 (203)
T 1uf9_A 147 G----LSREEVLARERA-QMPEE-----EKRKRATWVLENTG----SLEDLERALKAVLA 192 (203)
T ss_dssp C----CTTHHHHHHHTT-SCCHH-----HHHHHCSEEECCSS----HHHHHHHHHHHHHH
T ss_pred C----CCHHHHHHHHHH-CCChh-----HHHHhCCEEEECCC----CHHHHHHHHHHHHH
Confidence 3 233344444433 22221 12466899998875 35555666655554
No 23
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.57 E-value=1.5e-15 Score=136.31 Aligned_cols=160 Identities=15% Similarity=0.105 Sum_probs=105.0
Q ss_pred hccCCc-eeeeCCc-cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC------------
Q 023701 9 MIEASS-GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------------ 74 (278)
Q Consensus 9 ~~~~~~-~~~~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~------------ 74 (278)
+|+-.+ ++.|++. +|++||| .+.++.+++|.||||||||||+++|++.+.+
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl---------------~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~ 67 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINL---------------DIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRM 67 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEE---------------EECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred EEEEEeEEEEECCEEEEeeeEE---------------EECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEEC
Confidence 466667 9999995 6999999 9999999999999999999999999998764
Q ss_pred -------CCEEEEcCCC-CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCcCCCCCcc
Q 023701 75 -------QRVVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPAR 144 (278)
Q Consensus 75 -------~~~~~i~~D~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~~~~ 144 (278)
.++.++.++. ++..++..++..++......+.....+...+.++.+...... ....++.+..++...++.
T Consensus 68 ~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArA 147 (381)
T 3rlf_A 68 NDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRT 147 (381)
T ss_dssp TTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred CCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHH
Confidence 1344555543 334455555544432222111111123344555554443222 112555566666666677
Q ss_pred ccCCCcEEEEcccccCCchHHhhh-----------cC-eEEEEecChhhhh
Q 023701 145 RVNPSDVILLEGILVFHDSRVREL-----------MN-MKIFVDTDADVRL 183 (278)
Q Consensus 145 ~~~~~~iiiidg~~~~~d~~~~~~-----------~d-~~I~l~~~~e~~l 183 (278)
.+.+++++++|+|++.+|+..+.. .+ .+||++.+.+...
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~ 198 (381)
T 3rlf_A 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAM 198 (381)
T ss_dssp HHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHH
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence 788999999999999999743321 12 5678877766544
No 24
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.55 E-value=1.9e-15 Score=128.80 Aligned_cols=187 Identities=16% Similarity=0.126 Sum_probs=98.1
Q ss_pred hccCCc--eeee-CC-ccccceeeecccCCCCchhhhhhCCCC---CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEc
Q 023701 9 MIEASS--GVHF-SG-FHMDGLEVRNKETGQPTISAAENLHRQ---PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVN 81 (278)
Q Consensus 9 ~~~~~~--~~~~-~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~---~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~ 81 (278)
+++..+ ++.| ++ .+|+++|| .+.+ +.+|+|+|++||||||+++.|++.+ +..+++
T Consensus 17 ~l~~~~~~~~~~~~~~~~l~~~~~---------------~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l---g~~~~d 78 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQQILKKKAE---------------EVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL---GYTFFD 78 (250)
T ss_dssp ---------------CHHHHHHHH---------------TTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH---TCEEEE
T ss_pred ceEEcceeeEEecCcchhhhhhhh---------------hhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc---CCcEEe
Confidence 444433 5677 44 46999999 8888 9999999999999999999999998 578888
Q ss_pred CCCCCCCCC-HHHHHHccccCCCCCCcccHHHHH----HHHHHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcc
Q 023701 82 QDSFYHNLT-EQELARVHEYNFDHPDAFDTEKLL----SSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEG 156 (278)
Q Consensus 82 ~D~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~----~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg 156 (278)
.|.++.... ...... .|.. +..+.+. +.+..+.. .....+|.+|
T Consensus 79 ~d~~~~~~~~g~~i~~----i~~~---~ge~~fr~~e~~~l~~l~~------------------------~~~~~Via~G 127 (250)
T 3nwj_A 79 CDTLIEQAMKGTSVAE----IFEH---FGESVFREKETEALKKLSL------------------------MYHQVVVSTG 127 (250)
T ss_dssp HHHHHHHHSTTSCHHH----HHHH---HCHHHHHHHHHHHHHHHHH------------------------HCSSEEEECC
T ss_pred CcHHHHHHhcCccHHH----HHHH---hCcHHHHHHHHHHHHHHHh------------------------hcCCcEEecC
Confidence 876553211 000000 0000 0011111 11111110 0134566666
Q ss_pred cccCCchHHhhhc--CeEEEEecChhhhhHHhhhccccccCCCH-----------HHHHHHHhhcccccccccccccccc
Q 023701 157 ILVFHDSRVRELM--NMKIFVDTDADVRLARRIRRDTVEKGRDI-----------ATVLDQYSKFVKPAFDDFILPTKKY 223 (278)
Q Consensus 157 ~~~~~d~~~~~~~--d~~I~l~~~~e~~l~R~~~R~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~i~~~~~~ 223 (278)
......+.....+ +++|||+++.+++.+|+.+|....++... .+.+.....+..|.| ..
T Consensus 128 gG~v~~~~~~~~l~~~~vV~L~a~~e~l~~Rl~~~~~~~Rpl~~~~~~~d~~~~~~~~l~~l~~eR~~lY--------~~ 199 (250)
T 3nwj_A 128 GGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEAY--------TK 199 (250)
T ss_dssp GGGGGSHHHHHHHTTSEEEEEECCHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHHH--------TT
T ss_pred CCeecCHHHHHHHhCCcEEEEECCHHHHHHHHhhcCCCCCCcccCCCcccchhhHHHHHHHHHHHHHHHH--------hh
Confidence 5544444333332 89999999999999999864211222111 122233333333443 33
Q ss_pred ccEEe------------eCCCCcH-HHHHHHHHHHHHhhccC
Q 023701 224 ADIII------------PRGGDNH-VAIDLIVQHIRTKLGQH 252 (278)
Q Consensus 224 aD~iI------------~n~~~~~-~~~~~i~~~i~~~l~~~ 252 (278)
||++| ++++.++ +..+.+++.+...+..+
T Consensus 200 ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~~~~~ 241 (250)
T 3nwj_A 200 ASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSYLEKE 241 (250)
T ss_dssp SSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEecccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 89888 5554443 45567777776665444
No 25
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.54 E-value=8.4e-15 Score=130.86 Aligned_cols=159 Identities=16% Similarity=0.164 Sum_probs=105.0
Q ss_pred hccCCc-eeeeCCc-cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-----------
Q 023701 9 MIEASS-GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----------- 75 (278)
Q Consensus 9 ~~~~~~-~~~~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~----------- 75 (278)
||+-.+ ++.|++. +|++||| .+.++.+++|.||||||||||++.|++.+.+.
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl---------------~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i 67 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSF---------------EVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLV 67 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEE---------------EECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred EEEEEEEEEEECCEEEEeeeEE---------------EEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEEC
Confidence 566667 9999885 6999999 99999999999999999999999999987641
Q ss_pred --------CEEEEcCCC-CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCcCCCCCcc
Q 023701 76 --------RVVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPAR 144 (278)
Q Consensus 76 --------~~~~i~~D~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~~~~ 144 (278)
.+.++.++. ++..++..++..++......+..-..+...+.++.+...... ....++.+..++...++.
T Consensus 68 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArA 147 (359)
T 2yyz_A 68 NDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARA 147 (359)
T ss_dssp TTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred CCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 244555543 334455555555432211111011123445556655443222 122566666667666677
Q ss_pred ccCCCcEEEEcccccCCchHHhhh-----------cC-eEEEEecChhhh
Q 023701 145 RVNPSDVILLEGILVFHDSRVREL-----------MN-MKIFVDTDADVR 182 (278)
Q Consensus 145 ~~~~~~iiiidg~~~~~d~~~~~~-----------~d-~~I~l~~~~e~~ 182 (278)
.+.+++++++|+|++.+|+..+.. .+ .+||++.+.+..
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~ 197 (359)
T 2yyz_A 148 LVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEA 197 (359)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHH
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH
Confidence 789999999999999999753321 12 577777776654
No 26
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.53 E-value=8.5e-14 Score=114.58 Aligned_cols=158 Identities=13% Similarity=0.147 Sum_probs=87.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA 125 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~ 125 (278)
.++++|+|+|++||||||+++.|++.+ +..+++.|.++........ .. ...| ........+..+..
T Consensus 16 ~~~~~I~l~G~~GsGKSTla~~L~~~l---g~~~i~~d~~~~~~~~~~~-~~-g~~~------~~~~~~~~~~~l~~--- 81 (202)
T 3t61_A 16 RFPGSIVVMGVSGSGKSSVGEAIAEAC---GYPFIEGDALHPPENIRKM-SE-GIPL------TDDDRWPWLAAIGE--- 81 (202)
T ss_dssp CCSSCEEEECSTTSCHHHHHHHHHHHH---TCCEEEGGGGCCHHHHHHH-HH-TCCC------CHHHHHHHHHHHHH---
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh---CCEEEeCCcCcchhhHHHH-hc-CCCC------CchhhHHHHHHHHH---
Confidence 346789999999999999999999998 5788899887632111111 11 1112 11111122222111
Q ss_pred ccccccCCcCCcCCCCCccccCCCcEEEEcccccCCc--hHHhhhc---CeEEEEecChhhhhHHhhhccccccCCCHHH
Q 023701 126 VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD--SRVRELM---NMKIFVDTDADVRLARRIRRDTVEKGRDIAT 200 (278)
Q Consensus 126 i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d--~~~~~~~---d~~I~l~~~~e~~l~R~~~R~~~~~~~~~~~ 200 (278)
.+.....+|+|+...... ..+.... +.+|||+++.+++.+|+.+|..... . .+
T Consensus 82 -------------------~~~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~--~-~~ 139 (202)
T 3t61_A 82 -------------------RLASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHFM--P-SS 139 (202)
T ss_dssp -------------------HHTSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSCC--C-HH
T ss_pred -------------------HHhcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccCC--C-HH
Confidence 002223356665543211 1122222 5899999999999999999864222 2 33
Q ss_pred HHHHHhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHH
Q 023701 201 VLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIR 246 (278)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~i~~~i~ 246 (278)
..........+ ++...++++|+++.+.+...+.+++.+.
T Consensus 140 ~~~~~~~~~~~-------~~~~~~~~~Id~~~~~~e~~~~I~~~l~ 178 (202)
T 3t61_A 140 LLQTQLETLED-------PRGEVRTVAVDVAQPLAEIVREALAGLA 178 (202)
T ss_dssp HHHHHHHHCCC-------CTTSTTEEEEESSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-------CCCCCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 33333222221 1245689999988543344444444443
No 27
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.53 E-value=2.9e-15 Score=126.14 Aligned_cols=191 Identities=18% Similarity=0.207 Sum_probs=107.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhc---
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRH--- 122 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~--- 122 (278)
.++++|+|+||+||||||+++.|++.+ ++.+++.+.+|+.+....... .... -+.+.+.+.+..+..
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~l---g~~~~d~g~~~r~~~~~~~~~--gi~~-----~d~~~~~~~~~~~~~~~~ 76 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARAL---GARYLDTGAMYRIATLAVLRA--GADL-----TDPAAIEKAAADAEIGVG 76 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHH---TCEEEEHHHHHHHHHHHHHHH--TCCT-----TCHHHHHHHHHTCCEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh---CCCcccCCcHHHHHHHHHHHc--CCCc-----hhhHHHHHHHHhCCEEEe
Confidence 456799999999999999999999998 588899988775543221111 1111 122223333322110
Q ss_pred ----CCCccccccCCcC--C------------------cCCCCCccccCCC-cEEEEcccccCCchHHhhhcCeEEEEec
Q 023701 123 ----GQAVDIPNYDFKS--Y------------------KNNVFPARRVNPS-DVILLEGILVFHDSRVRELMNMKIFVDT 177 (278)
Q Consensus 123 ----~~~i~~~~~~~~~--~------------------~~~~~~~~~~~~~-~iiiidg~~~~~d~~~~~~~d~~I~l~~ 177 (278)
+..+.+...+... . ..+...+..+... ..+|++|..... .+.+..+++|||++
T Consensus 77 ~~~~~~~v~l~g~~v~~~ir~~~v~~~~s~va~~~~vr~~l~~~qr~~a~~~~~~V~~GRd~gt--~V~pda~lkifl~A 154 (233)
T 3r20_A 77 SDPDVDAAFLAGEDVSSEIRGDAVTGAVSAVSAVPAVRTRLVDIQRKLATEGGRVVVEGRDIGT--VVLPDADVKIFLTA 154 (233)
T ss_dssp CCTTSCCEEETTEECTTGGGSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSSSCEEEEESSCCC--CCCTTCSEEEEEEC
T ss_pred ecCCCcEEEECCeehhhhhcchHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCcEEEeccccee--EEcCCCCEEEEEEC
Confidence 0000000000000 0 0000001112233 568889974432 12234679999999
Q ss_pred ChhhhhHHhhhcccc-ccCCCHHHHHHHHhhcccccccccccccccccc-EEeeCCCCcHHHHHHHHHHHHHhhcc
Q 023701 178 DADVRLARRIRRDTV-EKGRDIATVLDQYSKFVKPAFDDFILPTKKYAD-IIIPRGGDNHVAIDLIVQHIRTKLGQ 251 (278)
Q Consensus 178 ~~e~~l~R~~~R~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD-~iI~n~~~~~~~~~~i~~~i~~~l~~ 251 (278)
+.++|.+|+.++... ..+.+.++.......+......++..|.+...| ++|+++..+ ++++++.|...+.+
T Consensus 155 ~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs~l~---iee~v~~I~~~i~~ 227 (233)
T 3r20_A 155 SAEERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTSDMD---QAQVIAHLLDLVTA 227 (233)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECTTSC---HHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECCCCC---HHHHHHHHHHHHHH
Confidence 999999999874211 134567777776666655556677788777777 999888754 56666666655543
No 28
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.53 E-value=8.5e-15 Score=130.73 Aligned_cols=143 Identities=17% Similarity=0.171 Sum_probs=90.7
Q ss_pred hhhhccCCc-eeeeCC-----ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-CEE
Q 023701 6 VVDMIEASS-GVHFSG-----FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVV 78 (278)
Q Consensus 6 ~~~~~~~~~-~~~~~~-----~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~-~~~ 78 (278)
+..||+..+ ++.|++ .+|+|||| .+.+|.+++|.||||||||||+++|++.+.+. |..
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl---------------~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I 85 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSL---------------HVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSV 85 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEE---------------EECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEE---------------EEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEE
Confidence 334788888 999964 36999999 99999999999999999999999999988652 334
Q ss_pred EEcCCCCCCCCCHHHH---HHccccCCCCCCcc----------------------cHHHHHHHHHHhhcCCCc--ccccc
Q 023701 79 LVNQDSFYHNLTEQEL---ARVHEYNFDHPDAF----------------------DTEKLLSSMEKLRHGQAV--DIPNY 131 (278)
Q Consensus 79 ~i~~D~~~~~~~~~~~---~~~~~~~~~~~~~~----------------------d~~~~~~~l~~~~~~~~i--~~~~~ 131 (278)
.++..++.. ++.... .....+.|+++.-+ ..+...+.++.+...... ....+
T Consensus 86 ~i~G~~i~~-~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~L 164 (366)
T 3tui_C 86 LVDGQELTT-LSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNL 164 (366)
T ss_dssp EETTEECSS-CCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTS
T ss_pred EECCEECCc-CCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhC
Confidence 444433221 111111 11122333332211 112334445544432221 11255
Q ss_pred CCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023701 132 DFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
+.+..+|...++..+.+++++++|+|++.+|+.
T Consensus 165 SGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~ 197 (366)
T 3tui_C 165 SGGQKQRVAIARALASNPKVLLCDQATSALDPA 197 (366)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHH
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHH
Confidence 555666666667778899999999999999974
No 29
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.53 E-value=1.1e-14 Score=130.35 Aligned_cols=159 Identities=17% Similarity=0.150 Sum_probs=102.6
Q ss_pred hccCCc-eeeeCCc-cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-C---------
Q 023701 9 MIEASS-GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------- 76 (278)
Q Consensus 9 ~~~~~~-~~~~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~-~--------- 76 (278)
||+-.+ ++.|++. +|++||| .+.++.+++|.||||||||||+++|++.+.+. |
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl---------------~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i 67 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINL---------------KIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDV 67 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEE---------------EECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred EEEEEeEEEEECCEEEEEeeEE---------------EECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEEC
Confidence 566666 8999885 6999999 99999999999999999999999999987642 2
Q ss_pred ---------EEEEcCCC-CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCcc--ccccCCcCCcCCCCCcc
Q 023701 77 ---------VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVD--IPNYDFKSYKNNVFPAR 144 (278)
Q Consensus 77 ---------~~~i~~D~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~--~~~~~~~~~~~~~~~~~ 144 (278)
+.++.++. ++..++..++..++......+..-..+...+.++.+....... ...++.+..++...++.
T Consensus 68 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArA 147 (362)
T 2it1_A 68 TELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARA 147 (362)
T ss_dssp TTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHH
T ss_pred CcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHH
Confidence 33444432 2333444444433211111111111223445555554433222 12556666666666677
Q ss_pred ccCCCcEEEEcccccCCchHHhhhc-----------C-eEEEEecChhhh
Q 023701 145 RVNPSDVILLEGILVFHDSRVRELM-----------N-MKIFVDTDADVR 182 (278)
Q Consensus 145 ~~~~~~iiiidg~~~~~d~~~~~~~-----------d-~~I~l~~~~e~~ 182 (278)
.+.+++++++|+|++.+|+..+..+ + .+||++.+.+..
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a 197 (362)
T 2it1_A 148 LVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEA 197 (362)
T ss_dssp HTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHH
Confidence 7899999999999999997433111 2 577777776654
No 30
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.53 E-value=4.3e-15 Score=118.77 Aligned_cols=171 Identities=13% Similarity=0.170 Sum_probs=89.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccc
Q 023701 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDI 128 (278)
Q Consensus 49 ~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~ 128 (278)
++|+|+|++||||||+++.| +.+ +..+++.|++++.... ..+ ....+...+.+.+.... +...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~---g~~~i~~~~~~~~~~~----~~~------~~~~~~~~~~~~~~~~~-~~~~-- 64 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER---GAKVIVMSDVVRKRYS----IEA------KPGERLMDFAKRLREIY-GDGV-- 64 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT---TCEEEEHHHHHHHHHH----HHC---------CCHHHHHHHHHHHH-CTTH--
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC---CCcEEEHhHHHHHHHH----hcC------CChhHHHHHHHHHHhhC-CHHH--
Confidence 57999999999999999999 766 5778887655432111 100 00111111111111100 0000
Q ss_pred cccCCcCCcCCCCCccccCCCcEEEEcccccCCc-hHHhhhc---CeEEEEecChhhhhHHhhhccccccCCCHHHHHHH
Q 023701 129 PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD-SRVRELM---NMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQ 204 (278)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d-~~~~~~~---d~~I~l~~~~e~~l~R~~~R~~~~~~~~~~~~~~~ 204 (278)
+. ..............+|+||...... ..+...+ +.+|||++|.+++.+|+..|+....+...+.+...
T Consensus 65 --~~-----~~~~~~l~~~~~~~vi~dg~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r 137 (179)
T 3lw7_A 65 --VA-----RLCVEELGTSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRR 137 (179)
T ss_dssp --HH-----HHHHHHHCSCCCSCEEEECCCCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHH
T ss_pred --HH-----HHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHH
Confidence 00 0000000013456789998621110 1222333 48999999999999999999765555667776665
Q ss_pred HhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHHH
Q 023701 205 YSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRT 247 (278)
Q Consensus 205 ~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~i~~~i~~ 247 (278)
+...... -..++...||++|+|+++.+...+.+.+.+..
T Consensus 138 ~~~~~~~----~~~~~~~~ad~vId~~~~~~~~~~~i~~~l~~ 176 (179)
T 3lw7_A 138 DREELKL----GIGEVIAMADYIITNDSNYEEFKRRCEEVTDR 176 (179)
T ss_dssp HHHHHHH----THHHHHHTCSEEEECCSCHHHHHHHHHHHHHH
T ss_pred HHhhhcc----ChHhHHHhCCEEEECCCCHHHHHHHHHHHHHH
Confidence 5321110 02224578999999887433344444444443
No 31
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.52 E-value=3.6e-14 Score=118.71 Aligned_cols=97 Identities=16% Similarity=0.154 Sum_probs=51.8
Q ss_pred CCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhccccccCC--CHHHHHHHHhhcccccccccccccccc-c
Q 023701 148 PSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGR--DIATVLDQYSKFVKPAFDDFILPTKKY-A 224 (278)
Q Consensus 148 ~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~l~R~~~R~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~-a 224 (278)
....+++||+... ..+.+.+|++|||+++.+++.+|+.++. ..++. ..+.....+..+..+.|.....|.... +
T Consensus 122 ~~~~~vldg~~~~--~~~~~~~d~~i~l~~~~e~~~~R~~~~l-~~rg~~~~~~~~~~~i~~R~~~~~~~~~~pl~~~~~ 198 (227)
T 1cke_A 122 ELPGLIADGRDMG--TVVFPDAPVKIFLDASSEERAHRRMLQL-QVKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAAD 198 (227)
T ss_dssp CTTCEEEEESSCC--CCCCTTCSEEEEEECCHHHHHHHHHHHH-HHHTCCCCHHHHHHHHC-------------CCCCTT
T ss_pred hCCCEEEECCCcc--ceEecCCCEEEEEeCCHHHHHHHHHHHH-HhCCccCCHHHHHHHHHHHHHhhhhhcccCccCCCC
Confidence 3457899998533 2344568999999999999999965431 11222 456666666655444555555565444 3
Q ss_pred cEEeeCCCCc-HHHHHHHHHHHHH
Q 023701 225 DIIIPRGGDN-HVAIDLIVQHIRT 247 (278)
Q Consensus 225 D~iI~n~~~~-~~~~~~i~~~i~~ 247 (278)
+++|+|++.+ +...+.+.+.+..
T Consensus 199 ~~~Id~~~~~~~ev~~~I~~~l~~ 222 (227)
T 1cke_A 199 ALVLDSTTLSIEQVIEKALQYARQ 222 (227)
T ss_dssp CEEEETTTSCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4899887433 2333444444443
No 32
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.52 E-value=1.9e-14 Score=129.10 Aligned_cols=159 Identities=18% Similarity=0.158 Sum_probs=101.7
Q ss_pred hccCCc-eeeeCCc-cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-C---------
Q 023701 9 MIEASS-GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------- 76 (278)
Q Consensus 9 ~~~~~~-~~~~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~-~--------- 76 (278)
||+..+ ++.|+++ +|++||| .+.++.+++|.||||||||||+++|++.+.+. |
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl---------------~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i 75 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNL---------------TIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDV 75 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEE---------------EECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred eEEEEEEEEEECCEEEEeeeEE---------------EECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEEC
Confidence 477777 9999985 6999999 99999999999999999999999999987642 2
Q ss_pred ---------EEEEcCCC-CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCcCCCCCcc
Q 023701 77 ---------VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPAR 144 (278)
Q Consensus 77 ---------~~~i~~D~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~~~~ 144 (278)
+.++.++. ++..++..++..++......+..-..+...+.++.+...... ....++.+..++...++.
T Consensus 76 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArA 155 (372)
T 1v43_A 76 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARA 155 (372)
T ss_dssp TTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHH
T ss_pred CCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHH
Confidence 33444432 233345555444332111111111112345556555443222 222566666667666677
Q ss_pred ccCCCcEEEEcccccCCchHHhhhc-----------C-eEEEEecChhhh
Q 023701 145 RVNPSDVILLEGILVFHDSRVRELM-----------N-MKIFVDTDADVR 182 (278)
Q Consensus 145 ~~~~~~iiiidg~~~~~d~~~~~~~-----------d-~~I~l~~~~e~~ 182 (278)
.+.+++++++|+|++.+|+..+..+ + .+||++.+.+..
T Consensus 156 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a 205 (372)
T 1v43_A 156 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEA 205 (372)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 7899999999999999997533211 2 577777776654
No 33
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.52 E-value=3.2e-15 Score=125.57 Aligned_cols=141 Identities=14% Similarity=0.126 Sum_probs=88.8
Q ss_pred hhccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-CEEEEcCCC
Q 023701 8 DMIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDS 84 (278)
Q Consensus 8 ~~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~-~~~~i~~D~ 84 (278)
.||+..+ ++.|++ .+|++||| .+.++.+++|.||||||||||++.|++.+.+. |...++..+
T Consensus 3 ~~l~~~~l~~~y~~~~~l~~vsl---------------~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 67 (224)
T 2pcj_A 3 EILRAENIKKVIRGYEILKGISL---------------SVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKE 67 (224)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEE---------------EEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred cEEEEEeEEEEECCEeeEeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE
Confidence 3677777 999987 46999999 99999999999999999999999999988652 444444433
Q ss_pred CCCCCCHHH---HH-HccccCCCCCCccc----------------------HHHHHHHHHHhhcCCCccc--cccCCcCC
Q 023701 85 FYHNLTEQE---LA-RVHEYNFDHPDAFD----------------------TEKLLSSMEKLRHGQAVDI--PNYDFKSY 136 (278)
Q Consensus 85 ~~~~~~~~~---~~-~~~~~~~~~~~~~d----------------------~~~~~~~l~~~~~~~~i~~--~~~~~~~~ 136 (278)
... ..... .. ....+.++++..+. .+...+.++.+........ ..++.+..
T Consensus 68 ~~~-~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~ 146 (224)
T 2pcj_A 68 VDY-TNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQ 146 (224)
T ss_dssp CCS-SCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHH
T ss_pred CCC-CCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHH
Confidence 221 11111 11 11222333222111 1123334444433222211 24455555
Q ss_pred cCCCCCccccCCCcEEEEcccccCCchH
Q 023701 137 KNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 137 ~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
++...++..+.+++++++|+|++.+|+.
T Consensus 147 qrv~laral~~~p~lllLDEPt~~LD~~ 174 (224)
T 2pcj_A 147 QRVAIARALANEPILLFADEPTGNLDSA 174 (224)
T ss_dssp HHHHHHHHTTTCCSEEEEESTTTTCCHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCHH
Confidence 5655566677899999999999999874
No 34
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.52 E-value=1.1e-14 Score=129.62 Aligned_cols=156 Identities=17% Similarity=0.199 Sum_probs=100.8
Q ss_pred hccCCc-eeeeCCccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-CEE--------
Q 023701 9 MIEASS-GVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVV-------- 78 (278)
Q Consensus 9 ~~~~~~-~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~-~~~-------- 78 (278)
||+..+ +++|++.+|++||| .+.++.+++|.||||||||||+++|++.+.+. |..
T Consensus 1 ml~~~~l~~~y~~~~l~~vsl---------------~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~ 65 (348)
T 3d31_A 1 MIEIESLSRKWKNFSLDNLSL---------------KVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVT 65 (348)
T ss_dssp CEEEEEEEEECSSCEEEEEEE---------------EECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECT
T ss_pred CEEEEEEEEEECCEEEeeeEE---------------EEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECC
Confidence 355556 88998768999999 99999999999999999999999999988642 223
Q ss_pred ----------EEcCCC-CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCcc--ccccCCcCCcCCCCCccc
Q 023701 79 ----------LVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVD--IPNYDFKSYKNNVFPARR 145 (278)
Q Consensus 79 ----------~i~~D~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~--~~~~~~~~~~~~~~~~~~ 145 (278)
++.++. ++..++..++..++......+.. +...+.++.+....... ...++.+..++...++..
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL 142 (348)
T 3d31_A 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARAL 142 (348)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHT
T ss_pred CCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 333332 22334444443332111111111 44555666555433222 225566666666666777
Q ss_pred cCCCcEEEEcccccCCchHHhhh-----------cC-eEEEEecChhhh
Q 023701 146 VNPSDVILLEGILVFHDSRVREL-----------MN-MKIFVDTDADVR 182 (278)
Q Consensus 146 ~~~~~iiiidg~~~~~d~~~~~~-----------~d-~~I~l~~~~e~~ 182 (278)
+.+++++++|+|++.+|+..+.. .+ .+|+++.+.+..
T Consensus 143 ~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~ 191 (348)
T 3d31_A 143 VTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEA 191 (348)
T ss_dssp TSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 89999999999999999743311 12 567777776554
No 35
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.52 E-value=1.4e-14 Score=124.58 Aligned_cols=139 Identities=11% Similarity=0.091 Sum_probs=92.0
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 023701 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSF 85 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~-~~~~~i~~D~~ 85 (278)
||+..+ ++.|++ .+|++||| .+.+|.+++|.||||||||||++.|++.+.+ .|...++..+.
T Consensus 11 ~l~~~~l~~~~~~~~vL~~vsl---------------~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~ 75 (266)
T 4g1u_C 11 LLEASHLHYHVQQQALINDVSL---------------HIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNL 75 (266)
T ss_dssp EEEEEEEEEEETTEEEEEEEEE---------------EEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEET
T ss_pred eEEEEeEEEEeCCeeEEEeeEE---------------EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence 577777 999998 46999999 9999999999999999999999999998864 23444433221
Q ss_pred ---------------------CCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCcc--ccccCCcCCcCCCCC
Q 023701 86 ---------------------YHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVD--IPNYDFKSYKNNVFP 142 (278)
Q Consensus 86 ---------------------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~--~~~~~~~~~~~~~~~ 142 (278)
+..++..++..++...+ ....+.+...+.++.+....... ...++.+..++...+
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iA 153 (266)
T 4g1u_C 76 NSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY--GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLA 153 (266)
T ss_dssp TTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS--CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHH
T ss_pred CcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc--CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHH
Confidence 22233333333322211 11122344555666555433221 124555555666555
Q ss_pred ccccC------CCcEEEEcccccCCchH
Q 023701 143 ARRVN------PSDVILLEGILVFHDSR 164 (278)
Q Consensus 143 ~~~~~------~~~iiiidg~~~~~d~~ 164 (278)
+..+. +++++++|+|++.+|+.
T Consensus 154 raL~~~~~~~~~p~lLllDEPts~LD~~ 181 (266)
T 4g1u_C 154 RVLAQLWQPQPTPRWLFLDEPTSALDLY 181 (266)
T ss_dssp HHHHHTCCSSCCCEEEEECCCCSSCCHH
T ss_pred HHHhcccccCCCCCEEEEeCccccCCHH
Confidence 66666 89999999999999974
No 36
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.51 E-value=1.3e-14 Score=124.61 Aligned_cols=145 Identities=13% Similarity=0.149 Sum_probs=88.9
Q ss_pred hhhhccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-CEEEEcC
Q 023701 6 VVDMIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQ 82 (278)
Q Consensus 6 ~~~~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~-~~~~i~~ 82 (278)
|..||+..+ ++.|++ .+|++||| .+.++.+++|.||||||||||++.|++.+.+. |...++.
T Consensus 21 m~~~l~i~~l~~~y~~~~vL~~vsl---------------~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g 85 (263)
T 2olj_A 21 MLQMIDVHQLKKSFGSLEVLKGINV---------------HIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDG 85 (263)
T ss_dssp -CCSEEEEEEEEEETTEEEEEEEEE---------------EECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred chheEEEEeEEEEECCEEEEEeeEE---------------EEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECC
Confidence 444788888 999988 47999999 99999999999999999999999999988652 3344443
Q ss_pred CCCC-CCCCHHHHHHccccCCCCCCcc-------------------c----HHHHHHHHHHhhcCCCcc--ccccCCcCC
Q 023701 83 DSFY-HNLTEQELARVHEYNFDHPDAF-------------------D----TEKLLSSMEKLRHGQAVD--IPNYDFKSY 136 (278)
Q Consensus 83 D~~~-~~~~~~~~~~~~~~~~~~~~~~-------------------d----~~~~~~~l~~~~~~~~i~--~~~~~~~~~ 136 (278)
.+.. .............|.++++..+ . .+...+.++.+....... ...++.+..
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqk 165 (263)
T 2olj_A 86 INLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQA 165 (263)
T ss_dssp EESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHH
T ss_pred EECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHH
Confidence 2221 0011111111112222222111 1 112333444433222111 124455555
Q ss_pred cCCCCCccccCCCcEEEEcccccCCchHH
Q 023701 137 KNNVFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 137 ~~~~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
++...++..+.+++++++|+|++.+|+..
T Consensus 166 QRv~lAraL~~~p~lllLDEPts~LD~~~ 194 (263)
T 2olj_A 166 QRVAIARALAMEPKIMLFDEPTSALDPEM 194 (263)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHH
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHH
Confidence 55555666788999999999999999753
No 37
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.51 E-value=7.8e-15 Score=125.52 Aligned_cols=142 Identities=13% Similarity=0.136 Sum_probs=88.8
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-CEEE------
Q 023701 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVL------ 79 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~-~~~~------ 79 (278)
||+..+ ++.|++ .+|++||| .+.+|.+++|.||||||||||++.|++.+.+. |...
T Consensus 15 ~l~i~~l~~~y~~~~vl~~vsl---------------~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~ 79 (256)
T 1vpl_A 15 AVVVKDLRKRIGKKEILKGISF---------------EIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNV 79 (256)
T ss_dssp CEEEEEEEEEETTEEEEEEEEE---------------EECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEET
T ss_pred eEEEEEEEEEECCEEEEEeeEE---------------EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEC
Confidence 677777 999987 46999999 99999999999999999999999999987652 3333
Q ss_pred -------------EcCCC-CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccc--cccCCcCCcCCCCCc
Q 023701 80 -------------VNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDI--PNYDFKSYKNNVFPA 143 (278)
Q Consensus 80 -------------i~~D~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~--~~~~~~~~~~~~~~~ 143 (278)
+.++. ++..++..++..+....+..+..-..+...+.++.+........ ..++.+..++...++
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAr 159 (256)
T 1vpl_A 80 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIAR 159 (256)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHH
T ss_pred CccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHH
Confidence 33332 22223333332221100000000001233344544433222222 245555556656666
Q ss_pred cccCCCcEEEEcccccCCchHH
Q 023701 144 RRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 144 ~~~~~~~iiiidg~~~~~d~~~ 165 (278)
..+.+++++++|+|++.+|+..
T Consensus 160 aL~~~p~lllLDEPts~LD~~~ 181 (256)
T 1vpl_A 160 ALMVNPRLAILDEPTSGLDVLN 181 (256)
T ss_dssp HHTTCCSEEEEESTTTTCCHHH
T ss_pred HHHcCCCEEEEeCCccccCHHH
Confidence 7788999999999999999753
No 38
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.51 E-value=1.7e-14 Score=123.27 Aligned_cols=143 Identities=13% Similarity=0.160 Sum_probs=99.7
Q ss_pred hhccCCc-eeeeC-C-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC--------CC
Q 023701 8 DMIEASS-GVHFS-G-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--------QR 76 (278)
Q Consensus 8 ~~~~~~~-~~~~~-~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~--------~~ 76 (278)
.||+.++ ++.|+ + .+|++||| .+.+|.+++|.||||||||||++.|++.+.+ ..
T Consensus 3 ~~l~i~~l~~~y~~~~~vl~~isl---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~ 67 (253)
T 2nq2_C 3 KALSVENLGFYYQAENFLFQQLNF---------------DLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQS 67 (253)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEEE---------------EEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSC
T ss_pred ceEEEeeEEEEeCCCCeEEEEEEE---------------EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecc
Confidence 3677777 89998 6 57999999 9999999999999999999999999998865 23
Q ss_pred EEEEcCCCC-CCCCCHHHHHHccccCC-C---CCCcccHHHHHHHHHHhhcCCCcc--ccccCCcCCcCCCCCccccCCC
Q 023701 77 VVLVNQDSF-YHNLTEQELARVHEYNF-D---HPDAFDTEKLLSSMEKLRHGQAVD--IPNYDFKSYKNNVFPARRVNPS 149 (278)
Q Consensus 77 ~~~i~~D~~-~~~~~~~~~~~~~~~~~-~---~~~~~d~~~~~~~l~~~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~ 149 (278)
+.++.++.. +..++..++..++.... . .+...+.+...+.++.+....... ...++.+..++...++..+.++
T Consensus 68 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p 147 (253)
T 2nq2_C 68 IGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASEC 147 (253)
T ss_dssp EEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTC
T ss_pred EEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 567777653 34567777665543211 1 111222344556666554332221 2245555556666666778899
Q ss_pred cEEEEcccccCCchHH
Q 023701 150 DVILLEGILVFHDSRV 165 (278)
Q Consensus 150 ~iiiidg~~~~~d~~~ 165 (278)
+++++|+|++.+|+..
T Consensus 148 ~lllLDEPts~LD~~~ 163 (253)
T 2nq2_C 148 KLILLDEPTSALDLAN 163 (253)
T ss_dssp SEEEESSSSTTSCHHH
T ss_pred CEEEEeCCcccCCHHH
Confidence 9999999999999753
No 39
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.50 E-value=4.1e-14 Score=116.58 Aligned_cols=174 Identities=20% Similarity=0.217 Sum_probs=93.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcC------
Q 023701 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG------ 123 (278)
Q Consensus 50 iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~------ 123 (278)
+|+|+|++||||||+++.|++.+ ++.+++.|.+++........ ....+. +.+.+.+.+..+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l---g~~~~d~d~~~~~~~~~~~~--~g~~~~-----~~~~~~~~~~~~~~~~~~~~~ 73 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL---GVPYLSSGLLYRAAAFLALR--AGVDPG-----DEEGLLALLEGLGVRLLAQAE 73 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---TCCEEEHHHHHHHHHHHHHH--HTCCTT-----CHHHHHHHHHHTTCEEECCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CCceeccchHHHhhhhhhHh--cCCCCC-----CHHHHHHHHHhCceeeeecCC
Confidence 89999999999999999999998 58888998877433211110 011111 112222333222110
Q ss_pred -CCccc---cccCCcCC-------------cCC----CCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhh
Q 023701 124 -QAVDI---PNYDFKSY-------------KNN----VFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVR 182 (278)
Q Consensus 124 -~~i~~---~~~~~~~~-------------~~~----~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~ 182 (278)
..+.. ..++.... ... ......+. ..+|+||+..+ ..+.+.+|++|||++|.+++
T Consensus 74 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~vi~g~~~~--~~~~~~~d~~i~l~a~~e~~ 149 (208)
T 3ake_A 74 GNRVLADGEDLTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP--PPFVAEGRDMG--TAVFPEAAHKFYLTASPEVR 149 (208)
T ss_dssp CCEEEETTEECGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC--SCEEEEESSCC--CCCCTTCSEEEEEECCHHHH
T ss_pred CceEEECCeeCchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc--CCEEEEcccee--EEEecCCcEEEEEECCHHHH
Confidence 00000 00000000 000 00000122 57899998766 23445689999999999999
Q ss_pred hHHhhhccccccCCCHHHHHHHHhhcccccccccccccccccc-EEeeCCCCcHHHHHHHHHHHHHh
Q 023701 183 LARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYAD-IIIPRGGDNHVAIDLIVQHIRTK 248 (278)
Q Consensus 183 l~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD-~iI~n~~~~~~~~~~i~~~i~~~ 248 (278)
.+|+.+|.. .+.++..+.+..+.......+ ...+| ++|+|++.+ ++++++.|.+.
T Consensus 150 ~~R~~~r~~----~~~~~~~~~~~~R~~~~~~~~----~~~ad~~~Id~~~~~---~ee~~~~I~~~ 205 (208)
T 3ake_A 150 AWRRARERP----QAYEEVLRDLLRRDERDKAQS----APAPDALVLDTGGMT---LDEVVAWVLAH 205 (208)
T ss_dssp HHHHHHTSS----SCHHHHHHHHHHHHHTC--CC----CCCTTCEEEETTTSC---HHHHHHHHHHH
T ss_pred HHHHHhhcc----cCHHHHHHHHHHHHHHHhhcc----cCCCCEEEEECCCCC---HHHHHHHHHHH
Confidence 999998863 234454444443211111111 45677 999988633 34444444443
No 40
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.50 E-value=1.8e-14 Score=128.57 Aligned_cols=159 Identities=17% Similarity=0.133 Sum_probs=104.4
Q ss_pred hccCCc-eeeeCC-c--cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-C-------
Q 023701 9 MIEASS-GVHFSG-F--HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R------- 76 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~--~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~-~------- 76 (278)
||+..+ +++|++ . +|++||| .+.++.+++|.||||||||||+++|++.+.+. |
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl---------------~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~ 67 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNI---------------NIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDR 67 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEE---------------EECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTE
T ss_pred EEEEEeEEEEECCEeeeeEeceEE---------------EECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCE
Confidence 577766 999988 4 8999999 99999999999999999999999999987541 1
Q ss_pred ----------------EEEEcCCC-CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCc
Q 023701 77 ----------------VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYK 137 (278)
Q Consensus 77 ----------------~~~i~~D~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~ 137 (278)
+.++.++. ++..++..++..++......+.....+...+.++.+...... ....++.+..+
T Consensus 68 ~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~Q 147 (353)
T 1oxx_K 68 LVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQ 147 (353)
T ss_dssp EEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHH
T ss_pred ECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHH
Confidence 33444442 334455555555433211111111123445556555443222 12256666666
Q ss_pred CCCCCccccCCCcEEEEcccccCCchHHhhh-----------cC-eEEEEecChhhh
Q 023701 138 NNVFPARRVNPSDVILLEGILVFHDSRVREL-----------MN-MKIFVDTDADVR 182 (278)
Q Consensus 138 ~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~-----------~d-~~I~l~~~~e~~ 182 (278)
+...++..+.+++++++|+|++.+|+..+.. .+ .+|+++.+.+..
T Consensus 148 RvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~ 204 (353)
T 1oxx_K 148 RVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADI 204 (353)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHH
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 7666677789999999999999999743311 12 577777776654
No 41
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.50 E-value=5.1e-15 Score=127.88 Aligned_cols=141 Identities=15% Similarity=0.204 Sum_probs=88.3
Q ss_pred hccCCc-eeeeCC-c-cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCC
Q 023701 9 MIEASS-GVHFSG-F-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDS 84 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~-~~~~~i~~D~ 84 (278)
||+..+ ++.|++ . +|++||| .+.+|.+++|.||||||||||++.|++.+.+ .|...++..+
T Consensus 7 ~l~i~~ls~~y~~~~~~L~~isl---------------~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~ 71 (275)
T 3gfo_A 7 ILKVEELNYNYSDGTHALKGINM---------------NIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKP 71 (275)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEE---------------EEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred EEEEEEEEEEECCCCeEEEeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEE
Confidence 688888 999975 4 7999999 9999999999999999999999999998865 2334444433
Q ss_pred CC-CCCCHHHHHHccccCCCCCC-------------------ccc----HHHHHHHHHHhhcCCCccc--cccCCcCCcC
Q 023701 85 FY-HNLTEQELARVHEYNFDHPD-------------------AFD----TEKLLSSMEKLRHGQAVDI--PNYDFKSYKN 138 (278)
Q Consensus 85 ~~-~~~~~~~~~~~~~~~~~~~~-------------------~~d----~~~~~~~l~~~~~~~~i~~--~~~~~~~~~~ 138 (278)
.. .............+.|+++. ... .+...+.++.+........ ..++.+..++
T Consensus 72 i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQR 151 (275)
T 3gfo_A 72 IDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKR 151 (275)
T ss_dssp CCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHH
T ss_pred CCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHH
Confidence 21 00001111112223333221 011 1223344444333221111 2455555556
Q ss_pred CCCCccccCCCcEEEEcccccCCchH
Q 023701 139 NVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 139 ~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
...++..+.+++++++|+|++.+|+.
T Consensus 152 v~iAraL~~~P~lLlLDEPts~LD~~ 177 (275)
T 3gfo_A 152 VAIAGVLVMEPKVLILDEPTAGLDPM 177 (275)
T ss_dssp HHHHHHHTTCCSEEEEECTTTTCCHH
T ss_pred HHHHHHHHcCCCEEEEECccccCCHH
Confidence 66666778899999999999999874
No 42
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.49 E-value=6.9e-15 Score=124.36 Aligned_cols=141 Identities=13% Similarity=0.089 Sum_probs=87.5
Q ss_pred hccCCc-eeeeCC-----ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-C-----
Q 023701 9 MIEASS-GVHFSG-----FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R----- 76 (278)
Q Consensus 9 ~~~~~~-~~~~~~-----~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~-~----- 76 (278)
||+..+ ++.|++ .+|++||| .+.++.+++|+||||||||||++.|++.+.+. |
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl---------------~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~ 65 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNL---------------NIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYID 65 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEE---------------EECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeE---------------EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEEC
Confidence 455666 888973 47999999 99999999999999999999999999988652 2
Q ss_pred -------------------EEEEcCCC-CCCCCCHHHHHHccccCC---CCCCcccHHHHHHHHHHhhcCCCc---cccc
Q 023701 77 -------------------VVLVNQDS-FYHNLTEQELARVHEYNF---DHPDAFDTEKLLSSMEKLRHGQAV---DIPN 130 (278)
Q Consensus 77 -------------------~~~i~~D~-~~~~~~~~~~~~~~~~~~---~~~~~~d~~~~~~~l~~~~~~~~i---~~~~ 130 (278)
+.++.++. ++..++..++..++.... ..+..-..+...+.+..+...... ....
T Consensus 66 g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 145 (235)
T 3tif_A 66 NIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQ 145 (235)
T ss_dssp TEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGG
T ss_pred CEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhh
Confidence 33444432 222334433333221110 000001112233444444332211 1124
Q ss_pred cCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023701 131 YDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
++.+..++...++..+.+++++++|+|++.+|+.
T Consensus 146 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~ 179 (235)
T 3tif_A 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSK 179 (235)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHH
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 5555556666666778899999999999999874
No 43
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.49 E-value=1.5e-14 Score=129.03 Aligned_cols=159 Identities=18% Similarity=0.201 Sum_probs=100.7
Q ss_pred hccCCc-eeee-CCc-cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-C--------
Q 023701 9 MIEASS-GVHF-SGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R-------- 76 (278)
Q Consensus 9 ~~~~~~-~~~~-~~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~-~-------- 76 (278)
||+..+ ++.| ++. +|++||| .+.++.+++|.||||||||||+++|++.+.+. |
T Consensus 14 ~l~~~~l~~~y~g~~~vl~~vsl---------------~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~ 78 (355)
T 1z47_A 14 TIEFVGVEKIYPGGARSVRGVSF---------------QIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKR 78 (355)
T ss_dssp EEEEEEEEECCTTSTTCEEEEEE---------------EEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEE
T ss_pred eEEEEEEEEEEcCCCEEEeeeEE---------------EECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEE
Confidence 566666 8999 774 6999999 99999999999999999999999999987642 2
Q ss_pred ----------EEEEcCC-CCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCcCCCCCc
Q 023701 77 ----------VVLVNQD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPA 143 (278)
Q Consensus 77 ----------~~~i~~D-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~~~ 143 (278)
+.++.++ .++..++..++..++......+..-..+...+.++.+...... ....++.+..++...++
T Consensus 79 i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalAr 158 (355)
T 1z47_A 79 VTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALAR 158 (355)
T ss_dssp CTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred CCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHH
Confidence 3334443 2233344444443322111111111122344555554433221 11255666666666667
Q ss_pred cccCCCcEEEEcccccCCchHHhhh-----------cC-eEEEEecChhhh
Q 023701 144 RRVNPSDVILLEGILVFHDSRVREL-----------MN-MKIFVDTDADVR 182 (278)
Q Consensus 144 ~~~~~~~iiiidg~~~~~d~~~~~~-----------~d-~~I~l~~~~e~~ 182 (278)
..+.+++++++|+|++.+|+..+.. .+ .+|+++.+.+..
T Consensus 159 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a 209 (355)
T 1z47_A 159 ALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEA 209 (355)
T ss_dssp HHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHH
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHH
Confidence 7789999999999999999743311 12 567777765554
No 44
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.49 E-value=4.3e-14 Score=119.82 Aligned_cols=141 Identities=13% Similarity=0.125 Sum_probs=92.9
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-----------
Q 023701 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----------- 75 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~----------- 75 (278)
||+.++ ++.|++ .+|++||| .+.+|.+++|.||||||||||++.|++.+.+.
T Consensus 6 ~l~~~~l~~~y~~~~vl~~vsl---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 70 (240)
T 1ji0_A 6 VLEVQSLHVYYGAIHAIKGIDL---------------KVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEEE---------------EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred eEEEEeEEEEECCeeEEeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC
Confidence 577777 999988 46999999 99999999999999999999999999987641
Q ss_pred -----------CEEEEcCCC-CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhh-cCCCc--cccccCCcCCcCCC
Q 023701 76 -----------RVVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLR-HGQAV--DIPNYDFKSYKNNV 140 (278)
Q Consensus 76 -----------~~~~i~~D~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~-~~~~i--~~~~~~~~~~~~~~ 140 (278)
++.++.++. ++..++..++..+..... .......+.+.+.++.+. ..... ....++.+..++..
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~ 149 (240)
T 1ji0_A 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR-KDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLA 149 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC-CCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHH
T ss_pred CCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC-CCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHH
Confidence 244555543 334445555554432111 111111233444444442 21111 22355555556666
Q ss_pred CCccccCCCcEEEEcccccCCchHH
Q 023701 141 FPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 141 ~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
.++..+.+++++++|+|++.+|+..
T Consensus 150 lAraL~~~p~lllLDEPts~LD~~~ 174 (240)
T 1ji0_A 150 IGRALMSRPKLLMMDEPSLGLAPIL 174 (240)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHH
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHH
Confidence 6667788999999999999999753
No 45
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.49 E-value=1.5e-13 Score=113.06 Aligned_cols=164 Identities=13% Similarity=0.117 Sum_probs=89.6
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG 123 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 123 (278)
+..++.+|+|+|++||||||+++.|++.+ +..+++.|++..... .......+.|.+ ......+..+..-
T Consensus 25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~~~---g~~~i~~d~~~~~~~--~~~~~~g~~~~~------~~~~~~~~~~~~~ 93 (200)
T 4eun_A 25 TGEPTRHVVVMGVSGSGKTTIAHGVADET---GLEFAEADAFHSPEN--IATMQRGIPLTD------EDRWPWLRSLAEW 93 (200)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHH---CCEEEEGGGGSCHHH--HHHHHTTCCCCH------HHHHHHHHHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCeEEcccccccHHH--HHHHhcCCCCCC------cccccHHHHHHHH
Confidence 44678899999999999999999999998 578888887653211 111111223322 1111111111100
Q ss_pred CCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhc------CeEEEEecChhhhhHHhhhccccccCCC
Q 023701 124 QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELM------NMKIFVDTDADVRLARRIRRDTVEKGRD 197 (278)
Q Consensus 124 ~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~------d~~I~l~~~~e~~l~R~~~R~~~~~~~~ 197 (278)
..........+|++.... .+...+.+ ...|||+++.+++.+|+.+|..... .
T Consensus 94 ------------------~~~~~~~g~~viid~~~~--~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~~~--~ 151 (200)
T 4eun_A 94 ------------------MDARADAGVSTIITCSAL--KRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKREGHFM--P 151 (200)
T ss_dssp ------------------HHHHHHTTCCEEEEECCC--CHHHHHHHTTSSSCCEEEEEECCHHHHHHHHTTCSCCSS--C
T ss_pred ------------------HHHHHhcCCCEEEEchhh--hHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHhcccCCC--C
Confidence 000111112244444322 23322222 2689999999999999998864332 2
Q ss_pred HHHHHHHHhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHHHhhccC
Q 023701 198 IATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQH 252 (278)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~i~~~i~~~l~~~ 252 (278)
.+.+..++.. ..+ ++...+|++|+++. .+++++++|...+...
T Consensus 152 ~~~l~~~~~~-~~~-------~~~~~~~~~Id~~~----~~~e~~~~I~~~l~~~ 194 (200)
T 4eun_A 152 ASLLQSQLAT-LEA-------LEPDESGIVLDLRQ----PPEQLIERALTWLDIA 194 (200)
T ss_dssp GGGHHHHHHH-CCC-------CCTTSCEEEEETTS----CHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHH-hCC-------CCCCCCeEEEECCC----CHHHHHHHHHHHHHhc
Confidence 3333333332 222 22455899999875 3566667766666543
No 46
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.48 E-value=4.1e-14 Score=119.51 Aligned_cols=189 Identities=20% Similarity=0.271 Sum_probs=99.4
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhc-
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRH- 122 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~- 122 (278)
...++.+|+|+|++||||||+++.|++.+ ++.+++.|.+++....... . ....+. +.+.+.+.+..+..
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l---g~~~~d~d~~~~~~~~~~~-~-~g~~~~-----~~~~~~~~~~~~~~~ 81 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF---GFTYLDTGAMYRAATYMAL-K-NQLGVE-----EVEALLALLDQHPIS 81 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH---CCEEEEHHHHHHHHHHHHH-H-TTCCTT-----CHHHHHHHHHHSCCE
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc---CCceecCCCeeEcceeeee-c-cCCCcc-----cHHHHHHHHHhcccc
Confidence 45778899999999999999999999988 5888998887743211000 0 011111 11222222221110
Q ss_pred -------CCCccc-c-ccCCcCCc------------------CCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEE
Q 023701 123 -------GQAVDI-P-NYDFKSYK------------------NNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFV 175 (278)
Q Consensus 123 -------~~~i~~-~-~~~~~~~~------------------~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l 175 (278)
+..+.. . .+...... ........+.....++++|.... ..+.+.+|++|||
T Consensus 82 f~~~~~~~~~i~~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~~~~~~~~~v~~g~~~~--~~~l~~~d~vi~L 159 (236)
T 1q3t_A 82 FGRSETGDQLVFVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGGIVMDGRDIG--TVVLPQAELKIFL 159 (236)
T ss_dssp EEEETTTEEEEEETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCEEEECSSCS--SSSGGGCSEEEEE
T ss_pred ccccCCccceEeECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHHHhcccCCEEEECCcch--hhhccCCCEEEEE
Confidence 000000 0 00000000 00000011223456788887543 2244567999999
Q ss_pred ecChhhhhHHhhhcccccc--CCCHHHHHHHHhhcccccccccccccccccc-EEeeCCCCc-HHHHHHHHHHH
Q 023701 176 DTDADVRLARRIRRDTVEK--GRDIATVLDQYSKFVKPAFDDFILPTKKYAD-IIIPRGGDN-HVAIDLIVQHI 245 (278)
Q Consensus 176 ~~~~e~~l~R~~~R~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD-~iI~n~~~~-~~~~~~i~~~i 245 (278)
+++.+++++|+..|. ..+ +.+.+...+.+..+..+.+.+++.|....+| ++|+|++.+ +...+.+.+.+
T Consensus 160 ~a~~e~~~~R~~~~~-~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~d~~vId~~~~s~eev~~~I~~~l 232 (236)
T 1q3t_A 160 VASVDERAERRYKEN-IAKGIETDLETLKKEIAARDYKDSHRETSPLKQAEDAVYLDTTGLNIQEVVEKIKAEA 232 (236)
T ss_dssp ECCHHHHHHHHHHHH-HHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCCTTCEEEECSSCCHHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHhhhhhhcccccccccCCEEEEcCCCCCHHHHHHHHHHHH
Confidence 999999999984331 111 2245555555554444444555566555566 999987533 23334444443
No 47
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.47 E-value=6.3e-14 Score=120.62 Aligned_cols=140 Identities=16% Similarity=0.122 Sum_probs=94.5
Q ss_pred hccCCc-eeeeC--C----ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-C----
Q 023701 9 MIEASS-GVHFS--G----FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---- 76 (278)
Q Consensus 9 ~~~~~~-~~~~~--~----~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~-~---- 76 (278)
||+..+ ++.|+ + .+|++||| .+.+|.+++|.|+||||||||++.|++.+.+. |
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl---------------~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~ 66 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSL---------------VINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLY 66 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEE---------------EECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEE---------------EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE
Confidence 566666 89997 3 36999999 99999999999999999999999999987642 2
Q ss_pred -------------EEEEcCCC--CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcC--CCc--cccccCCcCCc
Q 023701 77 -------------VVLVNQDS--FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG--QAV--DIPNYDFKSYK 137 (278)
Q Consensus 77 -------------~~~i~~D~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~--~~i--~~~~~~~~~~~ 137 (278)
+.++.++. ++...+..++..+....+ .+.....+.+.+.++.+... ... ....++.+..+
T Consensus 67 ~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~q 145 (266)
T 2yz2_A 67 DGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKR 145 (266)
T ss_dssp TTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHH
T ss_pred CCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHH
Confidence 34555542 333455555544432111 11122234555666665543 222 12255556666
Q ss_pred CCCCCccccCCCcEEEEcccccCCchH
Q 023701 138 NNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 138 ~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
+...++..+.+++++++|+|++.+|+.
T Consensus 146 Rv~lAraL~~~p~lllLDEPts~LD~~ 172 (266)
T 2yz2_A 146 RVAIASVIVHEPDILILDEPLVGLDRE 172 (266)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTCCHH
T ss_pred HHHHHHHHHcCCCEEEEcCccccCCHH
Confidence 666666778899999999999999974
No 48
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.46 E-value=2.2e-14 Score=122.91 Aligned_cols=141 Identities=16% Similarity=0.112 Sum_probs=89.3
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-CEEEEcC---
Q 023701 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQ--- 82 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~-~~~~i~~--- 82 (278)
||+..+ ++.|++ .+|++||| .+.+|.+++|.||||||||||++.|++.+.+. |...++.
T Consensus 7 ~l~i~~l~~~y~~~~vl~~vsl---------------~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~ 71 (257)
T 1g6h_A 7 ILRTENIVKYFGEFKALDGVSI---------------SVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI 71 (257)
T ss_dssp EEEEEEEEEEETTEEEEEEECC---------------EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred EEEEeeeEEEECCEeeEeeeEE---------------EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC
Confidence 677777 999988 46999999 99999999999999999999999999988652 3333333
Q ss_pred ------------------CC-CCCCCCHHHHHHccccC--CC-----------CCCcccHHHHHHHHHHhhcCCCcc--c
Q 023701 83 ------------------DS-FYHNLTEQELARVHEYN--FD-----------HPDAFDTEKLLSSMEKLRHGQAVD--I 128 (278)
Q Consensus 83 ------------------D~-~~~~~~~~~~~~~~~~~--~~-----------~~~~~d~~~~~~~l~~~~~~~~i~--~ 128 (278)
+. ++..++..++..++... .. .......+...+.++.+....... .
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 151 (257)
T 1g6h_A 72 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151 (257)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc
Confidence 21 11223333333322111 00 000011223444555543322111 1
Q ss_pred cccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023701 129 PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
..++.+..++...++..+.+++++++|+|++.+|+.
T Consensus 152 ~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~ 187 (257)
T 1g6h_A 152 GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPG 187 (257)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHH
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHH
Confidence 245555556655666678899999999999999875
No 49
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.46 E-value=3.3e-14 Score=118.36 Aligned_cols=138 Identities=10% Similarity=0.186 Sum_probs=93.1
Q ss_pred hccCCc-eeeeCCccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC------------
Q 023701 9 MIEASS-GVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ------------ 75 (278)
Q Consensus 9 ~~~~~~-~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~------------ 75 (278)
||+..+ ++.|++.+|++||| .+.++.+++|.||||||||||++.|++.+.+.
T Consensus 10 ~l~~~~ls~~y~~~il~~vsl---------------~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~ 74 (214)
T 1sgw_A 10 KLEIRDLSVGYDKPVLERITM---------------TIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT 74 (214)
T ss_dssp EEEEEEEEEESSSEEEEEEEE---------------EEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG
T ss_pred eEEEEEEEEEeCCeEEeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh
Confidence 566666 88998756999999 99999999999999999999999999987642
Q ss_pred ----CEEEEcCCC-CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCcccc--ccCCcCCcCCCCCccccCC
Q 023701 76 ----RVVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIP--NYDFKSYKNNVFPARRVNP 148 (278)
Q Consensus 76 ----~~~~i~~D~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~ 148 (278)
.+.++.++. ++..++..++..+....+.. ..+.+.+.+.++.+..... ..+ .++.+..++...++..+.+
T Consensus 75 ~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~--~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~ 151 (214)
T 1sgw_A 75 KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV--KVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVN 151 (214)
T ss_dssp GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC--CCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSC
T ss_pred hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC--chHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhC
Confidence 134555553 33445555554432111111 1123455666666654332 222 4455555555556667789
Q ss_pred CcEEEEcccccCCchH
Q 023701 149 SDVILLEGILVFHDSR 164 (278)
Q Consensus 149 ~~iiiidg~~~~~d~~ 164 (278)
++++++|+|++.+|+.
T Consensus 152 p~lllLDEPts~LD~~ 167 (214)
T 1sgw_A 152 AEIYVLDDPVVAIDED 167 (214)
T ss_dssp CSEEEEESTTTTSCTT
T ss_pred CCEEEEECCCcCCCHH
Confidence 9999999999999864
No 50
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.45 E-value=6.3e-14 Score=125.90 Aligned_cols=159 Identities=15% Similarity=0.101 Sum_probs=101.0
Q ss_pred hccCCc-eeeeCCc-cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-CEE-------
Q 023701 9 MIEASS-GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVV------- 78 (278)
Q Consensus 9 ~~~~~~-~~~~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~-~~~------- 78 (278)
||+-.+ ++.|++. +|++||| .+.++.+++|.||||||||||+++|++.+.+. |..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl---------------~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~ 67 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSL---------------EVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLV 67 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEE---------------EEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEE
T ss_pred EEEEEeEEEEECCEEEEeeeEE---------------EEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEEC
Confidence 566666 9999885 6999999 99999999999999999999999999987642 222
Q ss_pred -----------------EEcCCC-CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCcC
Q 023701 79 -----------------LVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKN 138 (278)
Q Consensus 79 -----------------~i~~D~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~ 138 (278)
++.++. ++..++..++..++......+..-..+...+.++.+...... ....++.+..++
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QR 147 (372)
T 1g29_1 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQR 147 (372)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHH
T ss_pred ccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHH
Confidence 333332 223344444433321111111111112344555555433222 122556666666
Q ss_pred CCCCccccCCCcEEEEcccccCCchHHhhh-----------cC-eEEEEecChhhh
Q 023701 139 NVFPARRVNPSDVILLEGILVFHDSRVREL-----------MN-MKIFVDTDADVR 182 (278)
Q Consensus 139 ~~~~~~~~~~~~iiiidg~~~~~d~~~~~~-----------~d-~~I~l~~~~e~~ 182 (278)
...++..+.+++++++|+|++.+|+..+.. .+ .+||++.+.+..
T Consensus 148 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a 203 (372)
T 1g29_1 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEA 203 (372)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH
T ss_pred HHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHH
Confidence 666677789999999999999999743321 12 577777776654
No 51
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.45 E-value=5.1e-14 Score=115.87 Aligned_cols=40 Identities=28% Similarity=0.429 Sum_probs=34.4
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
...++++|+|+|++||||||+++.|++.+ ++.+++.|+++
T Consensus 11 ~~~~~~~I~l~G~~GsGKsT~~~~L~~~~---g~~~i~~d~~~ 50 (203)
T 1ukz_A 11 SPDQVSVIFVLGGPGAGKGTQCEKLVKDY---SFVHLSAGDLL 50 (203)
T ss_dssp CTTTCEEEEEECSTTSSHHHHHHHHHHHS---SCEEEEHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHc---CceEEeHHHHH
Confidence 45667899999999999999999999987 57888887655
No 52
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.45 E-value=2.6e-13 Score=110.21 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=35.8
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHH-hCCCCEEEEcCCCCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQ-LHDQRVVLVNQDSFY 86 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~-l~~~~~~~i~~D~~~ 86 (278)
+..++++|+|+|++||||||+++.|++. + ++.+++.|.+.
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~l~---g~~~id~d~~~ 46 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMAEMIAAELD---GFQHLEVGKLV 46 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHHHHHHHHST---TEEEEEHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCEEeeHHHHH
Confidence 6778889999999999999999999998 5 68999988755
No 53
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.44 E-value=6e-14 Score=120.47 Aligned_cols=141 Identities=16% Similarity=0.167 Sum_probs=87.3
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 023701 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSF 85 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~-~~~~i~~D~~ 85 (278)
||+..+ ++.|++ .+|++||| .+.+|.+++|.||||||||||++.|++.+.+. |...++..+.
T Consensus 6 ~l~i~~l~~~y~~~~vl~~vsl---------------~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~ 70 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHEVLKGVSL---------------QARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNI 70 (262)
T ss_dssp CEEEEEEEEEETTEEEEEEEEE---------------EECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred eEEEeeEEEEECCEEEEEeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEc
Confidence 677777 999988 46999999 99999999999999999999999999988652 4444444332
Q ss_pred CC---------CCCHH---HHHHccccCCCCCCccc-----------------------HHHHHHHHHHhhcCCC-ccc-
Q 023701 86 YH---------NLTEQ---ELARVHEYNFDHPDAFD-----------------------TEKLLSSMEKLRHGQA-VDI- 128 (278)
Q Consensus 86 ~~---------~~~~~---~~~~~~~~~~~~~~~~d-----------------------~~~~~~~l~~~~~~~~-i~~- 128 (278)
.. ..... .......+.|+++..+. .+...+.++.+..... ...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~ 150 (262)
T 1b0u_A 71 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKY 150 (262)
T ss_dssp CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSC
T ss_pred cccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCC
Confidence 10 01111 11111222233221111 1122333443332211 111
Q ss_pred -cccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023701 129 -PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 129 -~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
..++.+..++...++..+.+++++++|+|++.+|+.
T Consensus 151 ~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~ 187 (262)
T 1b0u_A 151 PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE 187 (262)
T ss_dssp GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHH
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 244445555555566678899999999999999975
No 54
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.44 E-value=3.1e-14 Score=120.71 Aligned_cols=137 Identities=13% Similarity=0.095 Sum_probs=85.2
Q ss_pred hccCCc-eeeeCCccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-CEEEEcCCC--
Q 023701 9 MIEASS-GVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDS-- 84 (278)
Q Consensus 9 ~~~~~~-~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~-~~~~i~~D~-- 84 (278)
||+..+ ++.|++ .|++||| .+.+ .+++|.||||||||||++.|++.+.+. |...++..+
T Consensus 1 ml~~~~l~~~y~~-~l~~isl---------------~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 63 (240)
T 2onk_A 1 MFLKVRAEKRLGN-FRLNVDF---------------EMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT 63 (240)
T ss_dssp CCEEEEEEEEETT-EEEEEEE---------------EECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECT
T ss_pred CEEEEEEEEEeCC-EEeeeEE---------------EECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 455566 889987 5999999 9999 999999999999999999999988652 334443311
Q ss_pred -----------------CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccc--cccCCcCCcCCCCCccc
Q 023701 85 -----------------FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDI--PNYDFKSYKNNVFPARR 145 (278)
Q Consensus 85 -----------------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~--~~~~~~~~~~~~~~~~~ 145 (278)
++..++..++..+...... ...+.+...+.++.+........ ..++.+..++...++..
T Consensus 64 ~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral 141 (240)
T 2onk_A 64 PLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVE--RVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARAL 141 (240)
T ss_dssp TSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSC--HHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHH
T ss_pred cCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcC--CchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHH
Confidence 1122233333222111000 00012233444554443322222 24555555565566677
Q ss_pred cCCCcEEEEcccccCCchH
Q 023701 146 VNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 146 ~~~~~iiiidg~~~~~d~~ 164 (278)
+.+++++++|+|++.+|+.
T Consensus 142 ~~~p~lllLDEPts~LD~~ 160 (240)
T 2onk_A 142 VIQPRLLLLDEPLSAVDLK 160 (240)
T ss_dssp TTCCSSBEEESTTSSCCHH
T ss_pred HcCCCEEEEeCCcccCCHH
Confidence 8899999999999999974
No 55
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.44 E-value=8.7e-14 Score=113.80 Aligned_cols=122 Identities=16% Similarity=0.228 Sum_probs=70.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHH--H-HHHccccCCCCCCcccHHHHHHHHHHhh
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQ--E-LARVHEYNFDHPDAFDTEKLLSSMEKLR 121 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~--~-~~~~~~~~~~~~~~~d~~~~~~~l~~~~ 121 (278)
.+++.+|+|+|++||||||+++.|++.+ ++.+++.|++++..... . ...... .|........+.....+....
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l---~~~~i~~d~~~~~~~~~~~~~~~~i~~-~~~~g~~~~~~~~~~~~~~~i 84 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY---GFTHLSTGELLREELASESERSKLIRD-IMERGDLVPSGIVLELLKEAM 84 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH---TCEEEEHHHHHHHHHHHTCHHHHHHHH-HHHTTCCCCHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh---CCeEEcHHHHHHHHHHhCCHHHHHHHH-HHHcCCcCCHHHHHHHHHHHH
Confidence 3456799999999999999999999998 48888888766322100 0 000000 010111111111111111100
Q ss_pred cCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCch--HHhh---hcCeEEEEecChhhhhHHhhhccc
Q 023701 122 HGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDS--RVRE---LMNMKIFVDTDADVRLARRIRRDT 191 (278)
Q Consensus 122 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~--~~~~---~~d~~I~l~~~~e~~l~R~~~R~~ 191 (278)
.........+|+||....... .+.. .+|++|||++|.+++.+|+.+|+.
T Consensus 85 ---------------------~~~~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~ 138 (199)
T 2bwj_A 85 ---------------------VASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSR 138 (199)
T ss_dssp ---------------------HHHTTSCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCC
T ss_pred ---------------------hcccccCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCC
Confidence 001123556888875432111 1222 578999999999999999998863
No 56
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.43 E-value=1.9e-13 Score=111.18 Aligned_cols=37 Identities=27% Similarity=0.541 Sum_probs=31.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
++++|+|+|++||||||+++.|++.+ +..+++.|+++
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~---~~~~i~~d~~~ 38 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY---GYTHLSAGELL 38 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH---CCEEEEHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh---CCeEEeHHHHH
Confidence 46899999999999999999999988 47888887655
No 57
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.43 E-value=2.7e-14 Score=115.76 Aligned_cols=159 Identities=18% Similarity=0.184 Sum_probs=88.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHH----HHHHHhhcC
Q 023701 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLL----SSMEKLRHG 123 (278)
Q Consensus 48 ~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~l~~~~~~ 123 (278)
+++|+|+|++||||||+|+.|++.+ ++.+++.|.+++......... .|...+ ...+. +.+..+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~l---g~~~id~D~~~~~~~g~~~~~----~~~~~g---~~~~~~~~~~~~~~~--- 68 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKAL---GVGLLDTDVAIEQRTGRSIAD----IFATDG---EQEFRRIEEDVVRAA--- 68 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHH---TCCEEEHHHHHHHHHSSCHHH----HHHHHC---HHHHHHHHHHHHHHH---
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc---CCCEEeCchHHHHHcCCCHHH----HHHHhC---hHHHHHHHHHHHHHH---
Confidence 3469999999999999999999998 478888887653210000000 000000 00111 111111
Q ss_pred CCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhh--cCeEEEEecChhhhhHHhhhccccc--cCCCHH
Q 023701 124 QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVREL--MNMKIFVDTDADVRLARRIRRDTVE--KGRDIA 199 (278)
Q Consensus 124 ~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~--~d~~I~l~~~~e~~l~R~~~R~~~~--~~~~~~ 199 (278)
......++.+|.....++..++. ++.+|||++|.+++.+|+.+|.... ......
T Consensus 69 ----------------------~~~~~~vi~~g~~~v~~~~~~~~l~~~~vV~L~~~~e~~~~Rl~~r~~r~~~~~~~~~ 126 (184)
T 2iyv_A 69 ----------------------LADHDGVLSLGGGAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRA 126 (184)
T ss_dssp ----------------------HHHCCSEEECCTTGGGSHHHHHHHTTSCEEEEECCHHHHHHHTTCCCCCSSTTSCCHH
T ss_pred ----------------------HhcCCeEEecCCcEEcCHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCCCCccCCCHH
Confidence 01122344445433334433332 6899999999999999998885321 122233
Q ss_pred HHHHHHhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHHHhhcc
Q 023701 200 TVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQ 251 (278)
Q Consensus 200 ~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~i~~~i~~~l~~ 251 (278)
+....+.....+. +...+|++|++++.+ ++++++.|...+..
T Consensus 127 ~~i~~~~~~r~~~-------~~~~~~~~Idt~~~s---~ee~~~~I~~~l~~ 168 (184)
T 2iyv_A 127 EKYRALMAKRAPL-------YRRVATMRVDTNRRN---PGAVVRHILSRLQV 168 (184)
T ss_dssp HHHHHHHHHHHHH-------HHHHCSEEEECSSSC---HHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHH-------HhccCCEEEECCCCC---HHHHHHHHHHHHhh
Confidence 3333332212222 235689999987433 57777777766643
No 58
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.42 E-value=5e-14 Score=117.31 Aligned_cols=184 Identities=16% Similarity=0.260 Sum_probs=94.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHH--------HH--------c------cccCCCCC
Q 023701 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQEL--------AR--------V------HEYNFDHP 105 (278)
Q Consensus 48 ~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~--------~~--------~------~~~~~~~~ 105 (278)
+++|+|+|++||||||+++.|++.+ ++.+++.|.+++....... .. + +...+...
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~---g~~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~g~~i~~~g 79 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL---SMIYVDTGAMYRALTYKYLKLNKTEDFAKLVDQTTLDLTYKADKGQCVILDN 79 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT---TCEEEEHHHHHHHHHHHHHHTTSCSCHHHHHHTCCEEEEECTTCCEEEEETT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc---CCceecCChHHHHHHHHHHHhhhhHHHHHHHHhccccccccccccceEEeCC
Confidence 5689999999999999999999988 5889999887643211000 00 0 00000000
Q ss_pred C----cccHHHHHHHHHHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhh
Q 023701 106 D----AFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADV 181 (278)
Q Consensus 106 ~----~~d~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~ 181 (278)
. .+....+.+.+..+.. .|......... ...+.....++++|.... ..+.+.+|++|||+++.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~-----~p~v~~~~~~~----~~~~~~~~~~vi~g~~~~--~~~~~~~~~vi~l~a~~e~ 148 (219)
T 2h92_A 80 EDVTDFLRNNDVTQHVSYVAS-----KEPVRSFAVKK----QKELAAEKGIVMDGRDIG--TVVLPDADLKVYMIASVEE 148 (219)
T ss_dssp EECGGGSSSSHHHHHHHHHHT-----SHHHHHHHHHH----HHHHHTTCCEEEEESSCC--CCCCTTCSEEEEEECCHHH
T ss_pred ccchhhcCcHHHHHHHHHhcc-----CHHHHHHHHHH----HHHhccCCcEEEEcCCcc--ceecCCCCEEEEEECCHHH
Confidence 0 0111111111111100 01000000000 011223345788886432 2344567899999999999
Q ss_pred hhHHhhhccccccCC--CHHHHHHHHhhcccccccccccccccccc-EEeeCCCCcHHHHHHHHHHHHHhh
Q 023701 182 RLARRIRRDTVEKGR--DIATVLDQYSKFVKPAFDDFILPTKKYAD-IIIPRGGDNHVAIDLIVQHIRTKL 249 (278)
Q Consensus 182 ~l~R~~~R~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~aD-~iI~n~~~~~~~~~~i~~~i~~~l 249 (278)
+.+|+.++. ..++. +.++....+..+..+.....+.|....+| ++|+|++.+ ++++++.|...+
T Consensus 149 ~~~R~~~~~-~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~~~d~~~Id~~~~~---~ee~~~~I~~~l 215 (219)
T 2h92_A 149 RAERRYKDN-QLRGIESNFEDLKRDIEARDQYDMNREISPLRKADDAVTLDTTGKS---IEEVTDEILAMV 215 (219)
T ss_dssp HHHHHHHHH-HHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSCCCTTCEEEECTTCC---HHHHHHHHHHHH
T ss_pred HHHHHHHHH-HhcCcccCHHHHHHHHHHHHHhhhhhhccccccCCCeEEEECCCCC---HHHHHHHHHHHH
Confidence 999986431 11122 45555555543322223333344445566 999988633 455555555444
No 59
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.42 E-value=4.3e-12 Score=101.79 Aligned_cols=160 Identities=14% Similarity=0.186 Sum_probs=86.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHH-ccccCCCCCCcccHHHHHHHHHHhhcC
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELAR-VHEYNFDHPDAFDTEKLLSSMEKLRHG 123 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~l~~~~~~ 123 (278)
..++.+|+|+|++||||||+++.|++.+ +..+++.|.+... ..... .....+.. ......+..+..
T Consensus 5 ~~~g~~i~l~G~~GsGKSTl~~~l~~~~---g~~~i~~d~~~~~---~~~~~~~~g~~~~~------~~~~~~~~~~~~- 71 (175)
T 1knq_A 5 NHDHHIYVLMGVSGSGKSAVASEVAHQL---HAAFLDGDFLHPR---RNIEKMASGEPLND------DDRKPWLQALND- 71 (175)
T ss_dssp CTTSEEEEEECSTTSCHHHHHHHHHHHH---TCEEEEGGGGCCH---HHHHHHHTTCCCCH------HHHHHHHHHHHH-
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhh---CcEEEeCccccch---HHHHHhhcCcCCCc------cccccHHHHHHH-
Confidence 4568899999999999999999999987 5888899876532 11111 11111211 111111111110
Q ss_pred CCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCch---HHhhh-cC-eEEEEecChhhhhHHhhhccccccCCCH
Q 023701 124 QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDS---RVREL-MN-MKIFVDTDADVRLARRIRRDTVEKGRDI 198 (278)
Q Consensus 124 ~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~---~~~~~-~d-~~I~l~~~~e~~l~R~~~R~~~~~~~~~ 198 (278)
. . .........+|++..... .. .+... .+ .+|||++|.+++.+|+.+|+.... ..
T Consensus 72 --~-------------~--~~~~~~~~~~vi~~~~~~-~~~~~~l~~~~~~~~vv~l~~~~e~~~~R~~~R~~~~~--~~ 131 (175)
T 1knq_A 72 --A-------------A--FAMQRTNKVSLIVCSALK-KHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFF--KT 131 (175)
T ss_dssp --H-------------H--HHHHHHCSEEEEECCCCS-HHHHHHHHTTCTTEEEEEEECCHHHHHHHHHTSTTCCC--CH
T ss_pred --H-------------H--HHHHhcCCcEEEEeCchH-HHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhccCCCC--ch
Confidence 0 0 000111224556543322 11 12222 25 799999999999999999863321 12
Q ss_pred HHHHHHHhhcccccccccccc-ccccccEEeeCCCCcHHHHHHHHHHHHHhh
Q 023701 199 ATVLDQYSKFVKPAFDDFILP-TKKYADIIIPRGGDNHVAIDLIVQHIRTKL 249 (278)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~i~~-~~~~aD~iI~n~~~~~~~~~~i~~~i~~~l 249 (278)
..+..++.. ..+ + +...+|++|+++.+ ++++.++|...+
T Consensus 132 ~~~~~~~~~-~~~-------~~~~~~~~~~Id~~~~----~~~~~~~i~~~l 171 (175)
T 1knq_A 132 QMLVTQFET-LQE-------PGADETDVLVVDIDQP----LEGVVASTIEVI 171 (175)
T ss_dssp HHHHHHHHH-CCC-------CCTTCTTEEEEECSSC----HHHHHHHHHHHH
T ss_pred HHHHHHHHh-hhC-------cccCCCCeEEEeCCCC----HHHHHHHHHHHH
Confidence 222223222 111 1 34568999998742 455555555444
No 60
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.40 E-value=1.5e-13 Score=116.75 Aligned_cols=136 Identities=13% Similarity=0.171 Sum_probs=84.1
Q ss_pred hccCCc-eeee-CC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcC--
Q 023701 9 MIEASS-GVHF-SG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQ-- 82 (278)
Q Consensus 9 ~~~~~~-~~~~-~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~-~~~~~i~~-- 82 (278)
||+..+ ++.| ++ .+|++||| .+.+|.+++|.||||||||||++.|++.+.+ .|...++.
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 65 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISF---------------EAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQP 65 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEE---------------EECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEE
T ss_pred CEEEEEEEEEeCCCCceEEEeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 345555 8889 44 57999999 9999999999999999999999999998864 23344433
Q ss_pred ------------------CCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCcc-c------------ccc
Q 023701 83 ------------------DSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVD-I------------PNY 131 (278)
Q Consensus 83 ------------------D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~-~------------~~~ 131 (278)
+..+...+..++.. +......+.+.+.+.++.+....... . ..+
T Consensus 66 ~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~-----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~L 140 (243)
T 1mv5_A 66 IDNISLENWRSQIGFVSQDSAIMAGTIRENLT-----YGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKI 140 (243)
T ss_dssp STTTSCSCCTTTCCEECCSSCCCCEEHHHHTT-----SCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCC
T ss_pred hhhCCHHHHHhhEEEEcCCCccccccHHHHHh-----hhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcC
Confidence 22111112222221 11001123344555555544332221 1 134
Q ss_pred CCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023701 132 DFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
+.+..++...++..+.+++++++|+|++.+|+.
T Consensus 141 SgGq~qrv~lAral~~~p~lllLDEPts~LD~~ 173 (243)
T 1mv5_A 141 SGGQRQRLAIARAFLRNPKILMLDEATASLDSE 173 (243)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSS
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHH
Confidence 444444555556667899999999999999863
No 61
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.40 E-value=2e-13 Score=110.95 Aligned_cols=38 Identities=32% Similarity=0.516 Sum_probs=32.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
.++.+|+|+|++||||||+++.|++.+ +..+++.|+++
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l---~~~~i~~d~~~ 41 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDF---GWVHLSAGDLL 41 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHH---CCEEEEHHHHH
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHh---CCeEeeHHHHH
Confidence 456899999999999999999999988 47888887654
No 62
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.39 E-value=3e-13 Score=109.56 Aligned_cols=160 Identities=21% Similarity=0.230 Sum_probs=84.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHH----HHHHHhhc
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLL----SSMEKLRH 122 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~l~~~~~ 122 (278)
++..|+|+|++||||||+++.|++.+ +..+++.|.+........... .|.. +....+. +.+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l---~~~~i~~d~~~~~~~g~~~~~----~~~~---~g~~~~~~~~~~~~~~~-- 71 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT---KRILYDSDKEIEKRTGADIAW----IFEM---EGEAGFRRREREMIEAL-- 71 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH---CCCEEEHHHHHHHHHTSCHHH----HHHH---HHHHHHHHHHHHHHHHH--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh---CCCEEEChHHHHHHcCCChhh----HHHH---hCHHHHHHHHHHHHHHH--
Confidence 35689999999999999999999998 478888877542110000000 0000 0000010 111111
Q ss_pred CCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhh---hcCeEEEEecChhhhhHHh--hhccccccCCC
Q 023701 123 GQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE---LMNMKIFVDTDADVRLARR--IRRDTVEKGRD 197 (278)
Q Consensus 123 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~---~~d~~I~l~~~~e~~l~R~--~~R~~~~~~~~ 197 (278)
......++..|.....++...+ ..+++|||++|.+++.+|+ ..|........
T Consensus 72 -----------------------~~~~~~vi~~gg~~~~~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~~~~~~~rp~~~~ 128 (185)
T 3trf_A 72 -----------------------CKLDNIILATGGGVVLDEKNRQQISETGVVIYLTASIDTQLKRIGQKGEMRRPLFIK 128 (185)
T ss_dssp -----------------------HHSSSCEEECCTTGGGSHHHHHHHHHHEEEEEEECCHHHHHHHHHCCTTCSSCCCCC
T ss_pred -----------------------HhcCCcEEecCCceecCHHHHHHHHhCCcEEEEECCHHHHHHHHhhcCCCCCCCCCC
Confidence 1112345555544444554333 2358999999999999998 43322111111
Q ss_pred --HHHHHHHHhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHHHhhcc
Q 023701 198 --IATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQ 251 (278)
Q Consensus 198 --~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~i~~~i~~~l~~ 251 (278)
.............+.| ...||++|++++.+ ++++++.|.+.+..
T Consensus 129 ~~~~~~l~~~~~~r~~~y-------~~~ad~~Idt~~~~---~~e~~~~I~~~l~~ 174 (185)
T 3trf_A 129 NNSKEKLQQLNEIRKPLY-------QAMADLVYPTDDLN---PRQLATQILVDIKQ 174 (185)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHCSEEEECTTCC---HHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHHHHHH-------hhcCCEEEECCCCC---HHHHHHHHHHHHHH
Confidence 1222333223223333 34599999998644 45555555555443
No 63
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.38 E-value=1e-13 Score=119.95 Aligned_cols=141 Identities=10% Similarity=-0.000 Sum_probs=87.7
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 023701 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSF 85 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~-~~~~i~~D~~ 85 (278)
||+..+ ++.|++ .+|++||| .+.++.+++|.||||||||||++.|++.+.+. |...++..+.
T Consensus 21 ~l~~~~l~~~y~~~~vL~~isl---------------~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~ 85 (279)
T 2ihy_A 21 LIQLDQIGRMKQGKTILKKISW---------------QIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMP 85 (279)
T ss_dssp EEEEEEEEEEETTEEEEEEEEE---------------EEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCC
T ss_pred eEEEEeEEEEECCEEEEEeeeE---------------EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEc
Confidence 577777 999988 47999999 99999999999999999999999999998652 4444444332
Q ss_pred C-------------------------CCCCHHHHHHccccC----CCCCCcccHHHHHHHHHHhhcCCCc--cccccCCc
Q 023701 86 Y-------------------------HNLTEQELARVHEYN----FDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFK 134 (278)
Q Consensus 86 ~-------------------------~~~~~~~~~~~~~~~----~~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~ 134 (278)
. ..++..++..++... +..+..-..+...+.++.+...... ....++.+
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG 165 (279)
T 2ihy_A 86 GKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTG 165 (279)
T ss_dssp C---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHH
T ss_pred ccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHH
Confidence 1 011222222111100 0000000112334445544332211 11245555
Q ss_pred CCcCCCCCccccCCCcEEEEcccccCCchH
Q 023701 135 SYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 135 ~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
..++...++..+.+++++++|+|++.+|+.
T Consensus 166 qkqRv~lAraL~~~p~lLlLDEPts~LD~~ 195 (279)
T 2ihy_A 166 EKQRVMIARALMGQPQVLILDEPAAGLDFI 195 (279)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHH
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCccccCHH
Confidence 556655666778899999999999999875
No 64
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.38 E-value=8.5e-14 Score=117.78 Aligned_cols=137 Identities=12% Similarity=0.159 Sum_probs=90.1
Q ss_pred hccCCc-eeeeC--C-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC--------C
Q 023701 9 MIEASS-GVHFS--G-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--------R 76 (278)
Q Consensus 9 ~~~~~~-~~~~~--~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~--------~ 76 (278)
||+-.+ ++.|+ + .+|++||| .+.++.+++|.||||||||||++.|++.+.+. .
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~ 67 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITF---------------SIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGS 67 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEE---------------EECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSC
T ss_pred eEEEEEEEEEeCCCCCceeeeeEE---------------EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 566667 89997 3 57999999 99999999999999999999999999987541 2
Q ss_pred EEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHH---HHhhcCC-----Cc--cccccCCcCCcCCCCCcccc
Q 023701 77 VVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSM---EKLRHGQ-----AV--DIPNYDFKSYKNNVFPARRV 146 (278)
Q Consensus 77 ~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l---~~~~~~~-----~i--~~~~~~~~~~~~~~~~~~~~ 146 (278)
+.++.++.++...+..++..+... +. .. ......+.+ ..+.... .. ....++.+..++...++..+
T Consensus 68 i~~v~Q~~~~~~~tv~enl~~~~~-~~-~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~ 143 (237)
T 2cbz_A 68 VAYVPQQAWIQNDSLRENILFGCQ-LE-EP--YYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVY 143 (237)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTSC-CC-TT--HHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCcCCCcCHHHHhhCccc-cC-HH--HHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHh
Confidence 567777766655666665554321 11 11 111121211 1111100 01 11244455555555566677
Q ss_pred CCCcEEEEcccccCCchH
Q 023701 147 NPSDVILLEGILVFHDSR 164 (278)
Q Consensus 147 ~~~~iiiidg~~~~~d~~ 164 (278)
.+++++++|+|++.+|+.
T Consensus 144 ~~p~lllLDEPts~LD~~ 161 (237)
T 2cbz_A 144 SNADIYLFDDPLSAVDAH 161 (237)
T ss_dssp HCCSEEEEESTTTTSCHH
T ss_pred cCCCEEEEeCcccccCHH
Confidence 899999999999999875
No 65
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.38 E-value=3.2e-13 Score=115.85 Aligned_cols=151 Identities=19% Similarity=0.226 Sum_probs=94.3
Q ss_pred hccCCc-eeeeCC-----ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEc
Q 023701 9 MIEASS-GVHFSG-----FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVN 81 (278)
Q Consensus 9 ~~~~~~-~~~~~~-----~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~-~~~~~i~ 81 (278)
||+..+ ++.|++ ..|++||| .+. +.+++|.|+||||||||++.|++.+ | .|...++
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl---------------~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~ 63 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINL---------------EVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFIN 63 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEE---------------EEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEET
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeE---------------EEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEEC
Confidence 355556 888875 36999999 999 9999999999999999999999988 5 2333333
Q ss_pred ------------------CCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcC-CCcccc--ccCCcCCcCCC
Q 023701 82 ------------------QDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG-QAVDIP--NYDFKSYKNNV 140 (278)
Q Consensus 82 ------------------~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~-~~i~~~--~~~~~~~~~~~ 140 (278)
++..+ .++..++..+..... ..+.+...+.++.+... .....+ .++.+..++..
T Consensus 64 g~~~~~~~~~~~i~~~v~Q~~~l-~~tv~enl~~~~~~~----~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~ 138 (263)
T 2pjz_A 64 GMEVRKIRNYIRYSTNLPEAYEI-GVTVNDIVYLYEELK----GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVR 138 (263)
T ss_dssp TEEGGGCSCCTTEEECCGGGSCT-TSBHHHHHHHHHHHT----CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHH
T ss_pred CEECcchHHhhheEEEeCCCCcc-CCcHHHHHHHhhhhc----chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHH
Confidence 33222 233333322211000 12234455566665443 222222 44555555655
Q ss_pred CCccccCCCcEEEEcccccCCchHHh--------hhcCeEEEEecChhh
Q 023701 141 FPARRVNPSDVILLEGILVFHDSRVR--------ELMNMKIFVDTDADV 181 (278)
Q Consensus 141 ~~~~~~~~~~iiiidg~~~~~d~~~~--------~~~d~~I~l~~~~e~ 181 (278)
.++..+.+++++++|+|++.+|+... +....+|++..+.+.
T Consensus 139 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~ 187 (263)
T 2pjz_A 139 TSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDM 187 (263)
T ss_dssp HHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGG
T ss_pred HHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHH
Confidence 56667889999999999999997433 222356666665443
No 66
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.37 E-value=9.9e-14 Score=119.66 Aligned_cols=139 Identities=12% Similarity=0.108 Sum_probs=86.7
Q ss_pred hhhhccCCc-eeeeCC----ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-C---
Q 023701 6 VVDMIEASS-GVHFSG----FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--- 76 (278)
Q Consensus 6 ~~~~~~~~~-~~~~~~----~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~-~--- 76 (278)
+..||+..+ ++.|++ .+|++||| .+.++.+++|.|+||||||||++.|++.+.+. |
T Consensus 13 ~~~~l~~~~l~~~y~~~~~~~vl~~vsl---------------~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~ 77 (271)
T 2ixe_A 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTF---------------TLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVL 77 (271)
T ss_dssp CCCCEEEEEEEECCTTCTTSCCEEEEEE---------------EECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred CCceEEEEEEEEEeCCCCCceeeEeeEE---------------EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEE
Confidence 344677777 899975 46999999 99999999999999999999999999988652 2
Q ss_pred -----------------EEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHH---------HHHHHHHhh--cCCCc--
Q 023701 77 -----------------VVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEK---------LLSSMEKLR--HGQAV-- 126 (278)
Q Consensus 77 -----------------~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~---------~~~~l~~~~--~~~~i-- 126 (278)
+.++.++..+...+..++..++.... -+.+. +.+.+..+. .....
T Consensus 78 ~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~ 152 (271)
T 2ixe_A 78 LDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRT-----PTMEEITAVAMESGAHDFISGFPQGYDTEVGE 152 (271)
T ss_dssp ETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHTTCSSC-----CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCG
T ss_pred ECCEEcccCCHHHHhccEEEEecCCccccccHHHHHhhhcccC-----ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcC
Confidence 33444443222233333333221100 01011 112222221 11111
Q ss_pred cccccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023701 127 DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
....++.+..++...++..+.+++++++|+|++.+|+.
T Consensus 153 ~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~ 190 (271)
T 2ixe_A 153 TGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAG 190 (271)
T ss_dssp GGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHH
T ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHH
Confidence 11244555555655666778899999999999999874
No 67
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.37 E-value=4.1e-13 Score=109.52 Aligned_cols=120 Identities=19% Similarity=0.313 Sum_probs=67.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHH--HH-HHccccCCCCCCcccHHHHHHHHHHhhc
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQ--EL-ARVHEYNFDHPDAFDTEKLLSSMEKLRH 122 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~--~~-~~~~~~~~~~~~~~d~~~~~~~l~~~~~ 122 (278)
.++.+|+|+|++||||||+++.|++.+ +..+++.|++++..... .. ..+..+ +........+.....+....
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l---~~~~i~~d~~~~~~~~~~~~~~~~i~~~-~~~g~~~~~~~~~~~~~~~i- 81 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY---GYTHLSTGDLLRSEVSSGSARGKKLSEI-MEKGQLVPLETVLDMLRDAM- 81 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH---CCEEEEHHHHHHHHHHTTCHHHHHHHHH-HHTTCCCCHHHHHHHHHHHH-
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh---CCeEEcHHHHHHHHHHcCChHHHHHHHH-HHcCCcCCHHHHHHHHHHHH-
Confidence 467899999999999999999999988 47788887655321000 00 000000 00000111111111111100
Q ss_pred CCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCch--HH---hhhcCeEEEEecChhhhhHHhhhcc
Q 023701 123 GQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDS--RV---RELMNMKIFVDTDADVRLARRIRRD 190 (278)
Q Consensus 123 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~--~~---~~~~d~~I~l~~~~e~~l~R~~~R~ 190 (278)
......+..+|+|+.....+. .+ ...+|++|||++|.+++.+|+..|+
T Consensus 82 --------------------~~~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~ 134 (196)
T 2c95_A 82 --------------------VAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRG 134 (196)
T ss_dssp --------------------HHHTTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHH
T ss_pred --------------------HhccccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccC
Confidence 001123456888873222111 01 2456899999999999999998885
No 68
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.37 E-value=2.1e-13 Score=114.74 Aligned_cols=138 Identities=15% Similarity=0.142 Sum_probs=89.9
Q ss_pred hhhhccCCc-eeeeC--C-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC------
Q 023701 6 VVDMIEASS-GVHFS--G-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ------ 75 (278)
Q Consensus 6 ~~~~~~~~~-~~~~~--~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~------ 75 (278)
|..||+..+ ++.|+ + .+|++||| .+.+|.+++|.||||||||||++.|++.+.+.
T Consensus 3 ~~~~l~~~~l~~~y~~~~~~il~~vsl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 67 (229)
T 2pze_A 3 TTTEVVMENVTAFWEEGGTPVLKDINF---------------KIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH 67 (229)
T ss_dssp CCEEEEEEEEEECSSTTSCCSEEEEEE---------------EEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred ccceEEEEEEEEEeCCCCceeeeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEE
Confidence 445677777 89995 3 57999999 99999999999999999999999999998652
Q ss_pred --CEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHh-----hcC-CC-----c--cccccCCcCCcCCC
Q 023701 76 --RVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKL-----RHG-QA-----V--DIPNYDFKSYKNNV 140 (278)
Q Consensus 76 --~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~-----~~~-~~-----i--~~~~~~~~~~~~~~ 140 (278)
.+.++.++..+...+..++..++.. +......+.++.. ... .. + ....++.+..++..
T Consensus 68 ~g~i~~v~q~~~~~~~tv~enl~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~ 140 (229)
T 2pze_A 68 SGRISFCSQFSWIMPGTIKENIIFGVS-------YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 140 (229)
T ss_dssp CSCEEEECSSCCCCSBCHHHHHHTTSC-------CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHH
T ss_pred CCEEEEEecCCcccCCCHHHHhhccCC-------cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHH
Confidence 2556777655433466665554211 1111111222111 110 00 0 01234444445555
Q ss_pred CCccccCCCcEEEEcccccCCchHH
Q 023701 141 FPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 141 ~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
.++..+.+++++++|+|++.+|+..
T Consensus 141 lAral~~~p~lllLDEPts~LD~~~ 165 (229)
T 2pze_A 141 LARAVYKDADLYLLDSPFGYLDVLT 165 (229)
T ss_dssp HHHHHHSCCSEEEEESTTTTSCHHH
T ss_pred HHHHHhcCCCEEEEECcccCCCHHH
Confidence 5566778999999999999998753
No 69
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.37 E-value=3.5e-12 Score=101.64 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=31.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023701 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 49 ~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
++|+|+|++||||||+++.|++.+ +..+++.|.+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l---~~~~i~~d~~~ 36 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL---KYPIIKGSSFE 36 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH---CCCEEECCCHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---CCeeecCcccc
Confidence 479999999999999999999998 47888888755
No 70
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.37 E-value=1.7e-13 Score=116.63 Aligned_cols=133 Identities=17% Similarity=0.229 Sum_probs=81.2
Q ss_pred cCCc-eeee--CC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-CEEEEc----
Q 023701 11 EASS-GVHF--SG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVN---- 81 (278)
Q Consensus 11 ~~~~-~~~~--~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~-~~~~i~---- 81 (278)
+-.+ ++.| ++ .+|++||| .+.+|.+++|.|+||||||||++.|++.+.+. |...++
T Consensus 9 ~~~~l~~~y~~~~~~vl~~vsl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~ 73 (247)
T 2ff7_A 9 TFRNIRFRYKPDSPVILDNINL---------------SIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDL 73 (247)
T ss_dssp EEEEEEEESSTTSCEEEEEEEE---------------EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEET
T ss_pred eEEEEEEEeCCCCcceeeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEh
Confidence 3344 7889 34 57999999 99999999999999999999999999998642 333333
Q ss_pred ----------------CCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc-------------cccccC
Q 023701 82 ----------------QDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV-------------DIPNYD 132 (278)
Q Consensus 82 ----------------~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i-------------~~~~~~ 132 (278)
++..+...+..++..++ .+ ..+.+.+.+.+......... ....++
T Consensus 74 ~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~-----~~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LS 147 (247)
T 2ff7_A 74 ALADPNWLRRQVGVVLQDNVLLNRSIIDNISLA-----NP-GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLS 147 (247)
T ss_dssp TTSCHHHHHHHEEEECSSCCCTTSBHHHHHTTT-----CT-TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCC
T ss_pred hhCCHHHHHhcEEEEeCCCccccccHHHHHhcc-----CC-CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCC
Confidence 33222112222222211 01 12223333333322211000 012444
Q ss_pred CcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023701 133 FKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
.+..++...++..+.+++++++|+|++.+|+.
T Consensus 148 gGq~qRv~iAraL~~~p~lllLDEPts~LD~~ 179 (247)
T 2ff7_A 148 GGQRQRIAIARALVNNPKILIFDEATSALDYE 179 (247)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEECCCCSCCCHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 45555555566678899999999999999874
No 71
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.37 E-value=4e-13 Score=107.03 Aligned_cols=161 Identities=16% Similarity=0.185 Sum_probs=83.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccc
Q 023701 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDI 128 (278)
Q Consensus 49 ~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~ 128 (278)
++|+|+|++||||||+++.|++.+ ++.+++.|.+...........+ +.. +....+.+.-..+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l---~~~~i~~d~~~~~~~g~~~~~~----~~~---~~~~~~~~~~~~~l------- 63 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSL---NIPFYDVDEEVQKREGLSIPQI----FEK---KGEAYFRKLEFEVL------- 63 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHH---TCCEEEHHHHHHHHHTSCHHHH----HHH---SCHHHHHHHHHHHH-------
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh---CCCEEECcHHHHHHcCCCHHHH----HHH---hChHHHHHHHHHHH-------
Confidence 369999999999999999999988 4777887765422100000000 000 00011110000000
Q ss_pred cccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHh---hhcCeEEEEecChhhhhHHhhhccccccC-CCHHHHHHH
Q 023701 129 PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVR---ELMNMKIFVDTDADVRLARRIRRDTVEKG-RDIATVLDQ 204 (278)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~---~~~d~~I~l~~~~e~~l~R~~~R~~~~~~-~~~~~~~~~ 204 (278)
+ .......++|.+|......+... ..+|.+|||++|.+++++|+.+|...... ...+.+...
T Consensus 64 ~--------------~l~~~~~~Vi~~g~~~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~i~~~ 129 (168)
T 2pt5_A 64 K--------------DLSEKENVVISTGGGLGANEEALNFMKSRGTTVFIDIPFEVFLERCKDSKERPLLKRPLDEIKNL 129 (168)
T ss_dssp H--------------HHTTSSSEEEECCHHHHTCHHHHHHHHTTSEEEEEECCHHHHHHHCBCTTCCBGGGSCGGGTHHH
T ss_pred H--------------HHhccCCeEEECCCCEeCCHHHHHHHHcCCEEEEEECCHHHHHHHHhCCCCCCCCcchHHHHHHH
Confidence 0 00113345565543222222222 23689999999999999999886411110 112222233
Q ss_pred HhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHHHhhccCc
Q 023701 205 YSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHD 253 (278)
Q Consensus 205 ~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~i~~~i~~~l~~~~ 253 (278)
|... .+. +.. +|++| |+..+ ++.+.++|...+.+..
T Consensus 130 ~~~~-~~~-------~~~-~~~~i-~~~~~---~~~~~~~i~~~l~~~~ 165 (168)
T 2pt5_A 130 FEER-RKI-------YSK-ADIKV-KGEKP---PEEVVKEILLSLEGNA 165 (168)
T ss_dssp HHHH-HHH-------HTT-SSEEE-ECSSC---HHHHHHHHHHHHHTSC
T ss_pred HHHH-HHH-------HHh-CCEEE-CCCCC---HHHHHHHHHHHHHhcc
Confidence 3221 111 234 89999 66433 5666666666665544
No 72
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.36 E-value=2.4e-13 Score=115.95 Aligned_cols=140 Identities=16% Similarity=0.157 Sum_probs=84.2
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHH--hCC-CCEEEEcCC
Q 023701 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQ--LHD-QRVVLVNQD 83 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~--l~~-~~~~~i~~D 83 (278)
||+..+ ++.|++ .+|++||| .+.++.+++|.|+||||||||++.|++. +.+ .|...++..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl---------------~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~ 67 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNL---------------VVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGE 67 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEE---------------EEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTE
T ss_pred eEEEEeEEEEECCEEEEeceEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCE
Confidence 677777 999988 57999999 9999999999999999999999999997 432 344555443
Q ss_pred CCCCCCCHHHHHHc-cccCCCCCCccc-------------------------HHHHHHHHHHhhcC-CCcccc--c-cCC
Q 023701 84 SFYHNLTEQELARV-HEYNFDHPDAFD-------------------------TEKLLSSMEKLRHG-QAVDIP--N-YDF 133 (278)
Q Consensus 84 ~~~~~~~~~~~~~~-~~~~~~~~~~~d-------------------------~~~~~~~l~~~~~~-~~i~~~--~-~~~ 133 (278)
+.. .......... ..+.++++..+. .+.+.+.++.+... .....+ . ++.
T Consensus 68 ~~~-~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSg 146 (250)
T 2d2e_A 68 NIL-ELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSG 146 (250)
T ss_dssp ECT-TSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC---
T ss_pred ECC-CCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCH
Confidence 322 1111111111 122333332111 01222333333321 111111 2 555
Q ss_pred cCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023701 134 KSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 134 ~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
+..++...++..+.+++++++|+|++.+|+.
T Consensus 147 GqkQrv~iAraL~~~p~lllLDEPts~LD~~ 177 (250)
T 2d2e_A 147 GEKKRNEILQLLVLEPTYAVLDETDSGLDID 177 (250)
T ss_dssp -HHHHHHHHHHHHHCCSEEEEECGGGTTCHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHH
Confidence 5555555556677899999999999999875
No 73
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.35 E-value=4.9e-13 Score=109.91 Aligned_cols=40 Identities=13% Similarity=0.230 Sum_probs=33.7
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
....+++|+|+|++||||||+++.|++.+ +..+++.|++.
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~~l---~~~~i~~d~~~ 55 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAEKL---GIPQISTGELF 55 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHHHH---TCCEEEHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh---CCcEEehhHHH
Confidence 45667899999999999999999999988 46677777654
No 74
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.35 E-value=4.9e-13 Score=106.70 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=31.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
.-+.+|+|+|++||||||+++.|++.+ ++.+++.|.+.
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~~l---g~~~id~D~~~ 42 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGLAL---KLEVLDTDMII 42 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHHHH---TCCEEEHHHHH
T ss_pred cccceEEEECCCCCCHHHHHHHHHHHh---CCCEEEChHHH
Confidence 345689999999999999999999998 47888887755
No 75
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.35 E-value=2e-11 Score=102.63 Aligned_cols=182 Identities=14% Similarity=0.091 Sum_probs=87.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHH--HHHHHHhhc
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKL--LSSMEKLRH 122 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~l~~~~~ 122 (278)
..++++|+|.|++||||||+++.|++.+.. +..++....-- -+... ..+..+ ...+..++.... .-.......
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~~p~--~~~~g-~~i~~~-~~~~~~~~~~~~~ll~~a~r~~~ 97 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREPG--GVPTG-EEIRKI-VLEGNDMDIRTEAMLFAASRREH 97 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEECTTT--TCHHH-HHHHHH-TTC---CCHHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeecCCC--CCchH-HHHHHH-HhCCCCCCHHHHHHHHHHHHHHH
Confidence 348899999999999999999999999975 44333322100 11111 111111 111111221110 000111110
Q ss_pred CCCccccccCCcCCcCCCCCccccCCCcEEEEc----------ccccCCchHH----h------hhcCeEEEEecChhhh
Q 023701 123 GQAVDIPNYDFKSYKNNVFPARRVNPSDVILLE----------GILVFHDSRV----R------ELMNMKIFVDTDADVR 182 (278)
Q Consensus 123 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiid----------g~~~~~d~~~----~------~~~d~~I~l~~~~e~~ 182 (278)
- .. .....+..+.++|+| |.....+... . ..+|++|||+++++++
T Consensus 98 ~-------------~~--~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~ 162 (229)
T 4eaq_A 98 L-------------VL--KVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVG 162 (229)
T ss_dssp C-------------CC--CCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHH
T ss_pred H-------------HH--HHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHH
Confidence 0 00 001122345677777 5322223221 1 2468999999999999
Q ss_pred hHHhhhccccccCCCHHHHHHHHhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHHHhh
Q 023701 183 LARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKL 249 (278)
Q Consensus 183 l~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~i~~~i~~~l 249 (278)
.+|+.+|.... ++. +.....+..+....|......+ ....++|+++.+.+...+.+.+.|...+
T Consensus 163 ~~R~~~R~~~~-dr~-e~~~~~~~~rv~~~y~~l~~~~-~~~~~vIDa~~s~eev~~~I~~~l~~~l 226 (229)
T 4eaq_A 163 RERIIKNSRDQ-NRL-DQEDLKFHEKVIEGYQEIIHNE-SQRFKSVNADQPLENVVEDTYQTIIKYL 226 (229)
T ss_dssp HHHHHHC------CC-CHHHHHHHHHHHHHHHHHTTTC-TTTEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCc-cch-hhhhHHHHHHHHHHHHHHHHhC-CCCEEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 99999885321 111 1112223333344444433222 2234677776544444556666555544
No 76
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.34 E-value=6.6e-13 Score=108.00 Aligned_cols=171 Identities=19% Similarity=0.277 Sum_probs=89.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHH-HHHHhhcCC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLS-SMEKLRHGQ 124 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~l~~~~~~~ 124 (278)
+++.+|.|+|++||||||+++.|++.+ +..+++.|.+...+ . ....+.. ..+. ..+.. ....+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l---~~~~i~~D~~~~~~-----~--~~~~~~~-~~~~-~~~~~~~~~~~~~-- 68 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL---RLPLLSKDAFKEVM-----F--DGLGWSD-REWS-RRVGATAIMMLYH-- 68 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH---TCCEEEHHHHHHHH-----H--HHHCCCS-HHHH-HHHHHHHHHHHHH--
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc---CCeEecHHHHHHHH-----H--HhcCccc-hHHH-HHhhHHHHHHHHH--
Confidence 467899999999999999999999988 46667766542111 0 1111110 0000 00000 0000000
Q ss_pred CccccccCCcCCcCCCCCccccCCCcEEEEcccccCCc--hHH---hh---hcCeEEEEecChhhhhHHhhhcccc-cc-
Q 023701 125 AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD--SRV---RE---LMNMKIFVDTDADVRLARRIRRDTV-EK- 194 (278)
Q Consensus 125 ~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d--~~~---~~---~~d~~I~l~~~~e~~l~R~~~R~~~-~~- 194 (278)
.....+..+..+|+|+...... ..+ .. ..+++||++++.+++++|+.+|... .+
T Consensus 69 ----------------~~~~~l~~g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~r~ 132 (193)
T 2rhm_A 69 ----------------TAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARH 132 (193)
T ss_dssp ----------------HHHHHHHTTCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHHTTCC-
T ss_pred ----------------HHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcCccccC
Confidence 0001122334567777662110 011 21 2358999999999999999888531 11
Q ss_pred -CCCHHHHHH--HHhhcccccccccccccc-ccccEEeeCCCCcHHHHHHHHHHHHHhhcc
Q 023701 195 -GRDIATVLD--QYSKFVKPAFDDFILPTK-KYADIIIPRGGDNHVAIDLIVQHIRTKLGQ 251 (278)
Q Consensus 195 -~~~~~~~~~--~~~~~~~~~~~~~i~~~~-~~aD~iI~n~~~~~~~~~~i~~~i~~~l~~ 251 (278)
+.....+.. ++... +.. +.+.. ..++++|++++..+..++.+++.|.+.+..
T Consensus 133 ~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~Idt~~~~~~~~~~i~~~i~~~l~~ 188 (193)
T 2rhm_A 133 PGHCDDRSPADLELVRS----RGD-IPPLPLGGPLLTVDTTFPEQIDMNAIVQWVRQHLQS 188 (193)
T ss_dssp -------CHHHHHHHHH----SCC-CCCCCCCSCEEEEECSSGGGCCHHHHHHHHHHHHHH
T ss_pred cccccCccCcchhhHHH----Hhc-CCCccCCCCEEEEeCCCCcccCHHHHHHHHHHHHHh
Confidence 111111111 11111 122 12222 368899998876666678888888877654
No 77
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.34 E-value=4.8e-13 Score=107.04 Aligned_cols=37 Identities=24% Similarity=0.288 Sum_probs=31.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
++.+|+|+|++||||||+++.|++.++ ..+++.|.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~---~~~id~d~~~ 39 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN---MEFYDSDQEI 39 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT---CEEEEHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC---CCEEeccHHH
Confidence 457899999999999999999999984 6777776543
No 78
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.34 E-value=2.1e-13 Score=119.41 Aligned_cols=134 Identities=13% Similarity=0.153 Sum_probs=84.2
Q ss_pred ccCCc-eeeeCC--ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-----------
Q 023701 10 IEASS-GVHFSG--FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----------- 75 (278)
Q Consensus 10 ~~~~~-~~~~~~--~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~----------- 75 (278)
|+-.+ ++.|++ .+|++||| .++++.+++|+|+||||||||++.|++.+.+.
T Consensus 54 i~~~~vs~~y~~~~~vL~~isl---------------~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i 118 (306)
T 3nh6_A 54 IEFENVHFSYADGRETLQDVSF---------------TVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDI 118 (306)
T ss_dssp EEEEEEEEESSTTCEEEEEEEE---------------EECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEET
T ss_pred EEEEEEEEEcCCCCceeeeeeE---------------EEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEc
Confidence 44455 777853 46899999 99999999999999999999999999988652
Q ss_pred ----------CEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc-cc------------cccC
Q 023701 76 ----------RVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV-DI------------PNYD 132 (278)
Q Consensus 76 ----------~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i-~~------------~~~~ 132 (278)
.+.++.++.+....+..++..++... ...+...+.++.......+ .. ..++
T Consensus 119 ~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~------~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LS 192 (306)
T 3nh6_A 119 SQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVT------AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLS 192 (306)
T ss_dssp TSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTT------CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCC
T ss_pred ccCCHHHHhcceEEEecCCccCcccHHHHHHhhccc------CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCC
Confidence 24555555444334444444432211 1122233332222111000 00 1344
Q ss_pred CcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023701 133 FKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
.+..++...++..+.+++++|+|+|++.+|+.
T Consensus 193 GGqrQRvaiARAL~~~p~iLlLDEPts~LD~~ 224 (306)
T 3nh6_A 193 GGEKQRVAIARTILKAPGIILLDEATSALDTS 224 (306)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECCSSCCCHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 44445555566677899999999999999874
No 79
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.33 E-value=3.7e-12 Score=103.50 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=29.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCC
Q 023701 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDS 84 (278)
Q Consensus 49 ~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~ 84 (278)
++|+|+|++||||||+++.|++.+...++.+++.|.
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 379999999999999999999988434566676654
No 80
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.32 E-value=4.9e-13 Score=113.83 Aligned_cols=134 Identities=13% Similarity=0.091 Sum_probs=83.0
Q ss_pred hccCCceeeeCCccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEE--------
Q 023701 9 MIEASSGVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLV-------- 80 (278)
Q Consensus 9 ~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i-------- 80 (278)
||+..+ +.|. ..|++||| .+.+|.+++|.||||||||||++.|++.+.+.|...+
T Consensus 4 ~l~~~~-l~~~-~vl~~vsl---------------~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~ 66 (249)
T 2qi9_C 4 VMQLQD-VAES-TRLGPLSG---------------EVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAW 66 (249)
T ss_dssp EEEEEE-EEET-TTEEEEEE---------------EEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGS
T ss_pred EEEEEc-eEEE-EEEeeeEE---------------EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcC
Confidence 455544 3333 57999999 9999999999999999999999999998864333333
Q ss_pred ------------cCCC-CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccc--cccCCcCCcCCCCCccc
Q 023701 81 ------------NQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDI--PNYDFKSYKNNVFPARR 145 (278)
Q Consensus 81 ------------~~D~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~--~~~~~~~~~~~~~~~~~ 145 (278)
.++. ++..++..++..+.... . ...+.+.+.++.+........ ..++.+..++...++..
T Consensus 67 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~----~-~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL 141 (249)
T 2qi9_C 67 SATKLALHRAYLSQQQTPPFATPVWHYLTLHQHD----K-TRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVV 141 (249)
T ss_dssp CHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSS----T-TCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHH
T ss_pred CHHHHhceEEEECCCCccCCCCcHHHHHHHhhcc----C-CcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHH
Confidence 3332 12223333333322110 0 123445555655543322211 24444555555555556
Q ss_pred cCCCc-------EEEEcccccCCchH
Q 023701 146 VNPSD-------VILLEGILVFHDSR 164 (278)
Q Consensus 146 ~~~~~-------iiiidg~~~~~d~~ 164 (278)
+.+++ ++++|+|++.+|+.
T Consensus 142 ~~~p~~~~~~~~lllLDEPts~LD~~ 167 (249)
T 2qi9_C 142 LQITPQANPAGQLLLLDEPMNSLDVA 167 (249)
T ss_dssp HHHCTTTCTTCCEEEESSTTTTCCHH
T ss_pred HcCCCcCCCCCeEEEEECCcccCCHH
Confidence 67788 99999999999974
No 81
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.31 E-value=1.1e-12 Score=104.85 Aligned_cols=36 Identities=28% Similarity=0.297 Sum_probs=31.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023701 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 48 ~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
+++|+|+|++||||||+++.|++.+ +..+++.|.++
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~l---g~~~id~d~~~ 37 (173)
T 1e6c_A 2 TEPIFMVGARGCGMTTVGRELARAL---GYEFVDTDIFM 37 (173)
T ss_dssp CCCEEEESCTTSSHHHHHHHHHHHH---TCEEEEHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCcEEcccHHH
Confidence 4579999999999999999999998 47888887654
No 82
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.31 E-value=6.6e-13 Score=119.87 Aligned_cols=142 Identities=11% Similarity=0.193 Sum_probs=90.4
Q ss_pred hccCCc-eeee--CC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCC
Q 023701 9 MIEASS-GVHF--SG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDS 84 (278)
Q Consensus 9 ~~~~~~-~~~~--~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~ 84 (278)
.|+-.+ +++| ++ .+|++||| .+.++.+++|.||||||||||+++|++.+...|...++..+
T Consensus 19 ~i~~~~l~~~y~~~~~~~L~~vsl---------------~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~ 83 (390)
T 3gd7_A 19 QMTVKDLTAKYTEGGNAILENISF---------------SISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVS 83 (390)
T ss_dssp CEEEEEEEEESSSSSCCSEEEEEE---------------EECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCB
T ss_pred eEEEEEEEEEecCCCeEEeeceeE---------------EEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEE
Confidence 356666 8999 55 57999999 99999999999999999999999999987544445555544
Q ss_pred CCCCCCHHHHHHccccCCCCCCcc--------------cHHHHHHHHHHhhcCCCc-ccc-c-----------cCCcCCc
Q 023701 85 FYHNLTEQELARVHEYNFDHPDAF--------------DTEKLLSSMEKLRHGQAV-DIP-N-----------YDFKSYK 137 (278)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~--------------d~~~~~~~l~~~~~~~~i-~~~-~-----------~~~~~~~ 137 (278)
.. .+..........+.|+++.-| ..+...+.++.+...... ..| . ++.+..+
T Consensus 84 i~-~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQ 162 (390)
T 3gd7_A 84 WD-SITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQ 162 (390)
T ss_dssp TT-SSCHHHHHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHH
T ss_pred CC-cCChHHHhCCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHH
Confidence 32 122222222233344433222 223344444433321111 112 1 4555556
Q ss_pred CCCCCccccCCCcEEEEcccccCCchHHh
Q 023701 138 NNVFPARRVNPSDVILLEGILVFHDSRVR 166 (278)
Q Consensus 138 ~~~~~~~~~~~~~iiiidg~~~~~d~~~~ 166 (278)
+...++..+.+++++++|+|++.+|+..+
T Consensus 163 RvalARAL~~~P~lLLLDEPts~LD~~~~ 191 (390)
T 3gd7_A 163 LMCLARSVLSKAKILLLDEPSAHLDPVTY 191 (390)
T ss_dssp HHHHHHHHHTTCCEEEEESHHHHSCHHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 66666677889999999999999997543
No 83
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.31 E-value=9e-13 Score=105.92 Aligned_cols=160 Identities=16% Similarity=0.178 Sum_probs=83.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccc
Q 023701 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDI 128 (278)
Q Consensus 49 ~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~ 128 (278)
++|+|+|++||||||+++.|++.+ ++.+++.|.++.......... .|...+ ...+.+.-..+.
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l---~~~~~d~d~~~~~~~g~~~~~----~~~~~g---~~~~~~~~~~~~------- 67 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL---DLVFLDSDFLIEQKFNQKVSE----IFEQKR---ENFFREQEQKMA------- 67 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH---TCEEEEHHHHHHHHHTSCHHH----HHHHHC---HHHHHHHHHHHH-------
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc---CCCEEcccHHHHHHcCCCHHH----HHHHcC---HHHHHHHHHHHH-------
Confidence 369999999999999999999998 478888887552110000000 000000 001111000000
Q ss_pred cccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhcc--ccccCCCHHHHHHHHh
Q 023701 129 PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRD--TVEKGRDIATVLDQYS 206 (278)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~l~R~~~R~--~~~~~~~~~~~~~~~~ 206 (278)
.........++..|.....+.. ....+.+|||+++.+++.+|+.+|. ........+.+...|.
T Consensus 68 --------------~~l~~~~~~vi~~g~~~~~~~~-l~~~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~~~~i~~~~~ 132 (175)
T 1via_A 68 --------------DFFSSCEKACIATGGGFVNVSN-LEKAGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKKLYN 132 (175)
T ss_dssp --------------HHHTTCCSEEEECCTTGGGSTT-GGGGCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHHHHH
T ss_pred --------------HHHHccCCEEEECCCCEehhhH-HhcCCEEEEEeCCHHHHHHHHhcccCCCCCCcccHHHHHHHHH
Confidence 0001112233333322221211 2235799999999999999998773 2111111344434343
Q ss_pred hccccccccccccccccccEEeeCCCCcHHHHHHHHHHHHHhhcc
Q 023701 207 KFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQ 251 (278)
Q Consensus 207 ~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~i~~~i~~~l~~ 251 (278)
. ..+.| ...+|++|++++.+ ++++++.|...+.+
T Consensus 133 ~-r~~~y-------~~~~~~~Idt~~~~---~eev~~~I~~~l~~ 166 (175)
T 1via_A 133 E-RLSKY-------EQKANFILNIENKN---IDELLSEIKKVIKE 166 (175)
T ss_dssp H-HHHHH-------HHHCSEEEECTTCC---HHHHHHHHHHHHC-
T ss_pred H-HHHHH-------HhcCCEEEECCCCC---HHHHHHHHHHHHHh
Confidence 3 22222 24579999887543 56666666666543
No 84
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.31 E-value=6.7e-13 Score=113.80 Aligned_cols=136 Identities=11% Similarity=0.112 Sum_probs=83.7
Q ss_pred hccCCc-eeeeCC----ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcC-
Q 023701 9 MIEASS-GVHFSG----FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ- 82 (278)
Q Consensus 9 ~~~~~~-~~~~~~----~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~- 82 (278)
||+-.+ ++.|++ .+|++||| .+.+|.+++|.||||||||||++.|++.+.+.|...++.
T Consensus 17 ~l~i~~l~~~y~~~~~~~vl~~vsl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~ 81 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQTNHRTLKSINF---------------FIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGK 81 (260)
T ss_dssp CEEEEEEEECCTTCCSSCSEEEEEE---------------EECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTE
T ss_pred eEEEEEEEEEeCCCCcCceeEeeEE---------------EECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCE
Confidence 567667 889975 37999999 999999999999999999999999999876544444433
Q ss_pred -------------------CCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCC-----------c--cccc
Q 023701 83 -------------------DSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA-----------V--DIPN 130 (278)
Q Consensus 83 -------------------D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~-----------i--~~~~ 130 (278)
+..+...+..++..++. . ....+...+.++....... + ....
T Consensus 82 ~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~-----~-~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~ 155 (260)
T 2ghi_A 82 NVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGK-----L-DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMK 155 (260)
T ss_dssp EGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTC-----T-TCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBC
T ss_pred EhhhcCHHHHhccEEEEcCCCcccccCHHHHHhccC-----C-CCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCc
Confidence 22221122222222211 0 0112223333322211000 0 0123
Q ss_pred cCCcCCcCCCCCccccCCCcEEEEcccccCCchHH
Q 023701 131 YDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
++.+..++...++..+.+++++++|+|++.+|+..
T Consensus 156 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~ 190 (260)
T 2ghi_A 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT 190 (260)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence 44444455555566778999999999999998753
No 85
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.31 E-value=6e-13 Score=109.35 Aligned_cols=179 Identities=15% Similarity=0.175 Sum_probs=85.4
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG 123 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 123 (278)
...+|.+|+|+||+||||||+++.|++.++ . ..+......+.... ....-..+.|.++ ..+..... .+
T Consensus 3 ~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~--~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~---~~ 70 (205)
T 3tr0_A 3 AMNKANLFIISAPSGAGKTSLVRALVKALA--E-IKISISHTTRPKRP-GDQEGVDYFFIDE-----TRFQAMVK---EG 70 (205)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHSS--S-EEECCCEECSCCCT-TCCBTTTBEECCH-----HHHHHHHH---HT
T ss_pred cCCCCcEEEEECcCCCCHHHHHHHHHhhCC--C-eEEeceeccCCCch-hHhcCceEEeccH-----HHHHHHHh---cC
Confidence 456788999999999999999999999864 2 22232221111000 0000011222221 11221111 11
Q ss_pred CCccccccCCcCCcCC-CCCccccCCCcEEEEcccccCCchHHhhhcC--eEEEEec-ChhhhhHHhhhccccccCCCHH
Q 023701 124 QAVDIPNYDFKSYKNN-VFPARRVNPSDVILLEGILVFHDSRVRELMN--MKIFVDT-DADVRLARRIRRDTVEKGRDIA 199 (278)
Q Consensus 124 ~~i~~~~~~~~~~~~~-~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d--~~I~l~~-~~e~~l~R~~~R~~~~~~~~~~ 199 (278)
.......+........ ......+..+..+++++..... ..+...++ ..||+.+ +.+++.+|+.+|+... ...+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~-~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~-~~~i~ 148 (205)
T 3tr0_A 71 AFLEHATIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGA-RQIRELFPPALSIFILPPSIEALRERLIKRRQDD-TAIIE 148 (205)
T ss_dssp CEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEECCHHHH-HHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTSC-SSTHH
T ss_pred cEEeeeeeecccccchHHHHHHHHHcCCeEEEEECHHHH-HHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCCC-HHHHH
Confidence 1111011100000000 0001123455677888643332 23333333 5677776 5888999998887433 23344
Q ss_pred HHHHHHhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHH
Q 023701 200 TVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIR 246 (278)
Q Consensus 200 ~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~i~~~i~ 246 (278)
..+....... .+...+|++|.|+ +.+...+.+.+.|.
T Consensus 149 ~rl~~~~~~~---------~~~~~~d~vi~n~-~~~~~~~~l~~~i~ 185 (205)
T 3tr0_A 149 QRLALAREEM---------AHYKEFDYLVVND-NFDQAVQNLIHIIS 185 (205)
T ss_dssp HHHHHHHHHH---------TTGGGCSEEEECS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---------hcccCCCEEEECC-CHHHHHHHHHHHHH
Confidence 4443332211 1246789999987 44444555555544
No 86
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.28 E-value=9.4e-13 Score=113.29 Aligned_cols=140 Identities=14% Similarity=0.074 Sum_probs=84.8
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHh--CC-CCEEEEcC-
Q 023701 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQL--HD-QRVVLVNQ- 82 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l--~~-~~~~~i~~- 82 (278)
||+..+ ++.|++ .+|++||| .+.+|.+++|.|+||||||||++.|++.+ .+ .|...++.
T Consensus 20 ~l~~~~l~~~y~~~~vl~~vsl---------------~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~ 84 (267)
T 2zu0_C 20 MLSIKDLHVSVEDKAILRGLSL---------------DVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGK 84 (267)
T ss_dssp CEEEEEEEEEETTEEEEEEEEE---------------EECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTE
T ss_pred eEEEEeEEEEECCEEEEEeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCE
Confidence 577777 899987 57999999 99999999999999999999999999973 22 23333333
Q ss_pred --------------------CC-CCCCCCHHHHHHccc--c--CCCCCCccc----HHHHHHHHHHhhcCC-Cc-ccc--
Q 023701 83 --------------------DS-FYHNLTEQELARVHE--Y--NFDHPDAFD----TEKLLSSMEKLRHGQ-AV-DIP-- 129 (278)
Q Consensus 83 --------------------D~-~~~~~~~~~~~~~~~--~--~~~~~~~~d----~~~~~~~l~~~~~~~-~i-~~~-- 129 (278)
+. ++..++..++..+.. . .+..+ .+. .+.+.+.++.+.... .. ..+
T Consensus 85 ~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 163 (267)
T 2zu0_C 85 DLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQE-TLDRFDFQDLMEEKIALLKMPEDLLTRSVNV 163 (267)
T ss_dssp EGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCC-CCCHHHHHHHHHHHHHHTTCCTTTTTSBTTT
T ss_pred ECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccc-cCCHHHHHHHHHHHHHHcCCChhHhcCCccc
Confidence 21 112222222111100 0 00000 011 122334444443321 11 112
Q ss_pred ccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023701 130 NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
.++.+..++...++..+.+++++++|+|++.+|+.
T Consensus 164 ~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~ 198 (267)
T 2zu0_C 164 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDID 198 (267)
T ss_dssp TCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Confidence 25555556666666677899999999999999875
No 87
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.28 E-value=6.7e-12 Score=103.44 Aligned_cols=182 Identities=16% Similarity=0.181 Sum_probs=90.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHcc-ccCCCCCCcccHHHHHHHHHHhhcC
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVH-EYNFDHPDAFDTEKLLSSMEKLRHG 123 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~l~~~~~~ 123 (278)
..++++|+|+|||||||||+++.|++.++. .+.. +.....+... ....-+ .+.| .+.+.+.+.+ ..+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~-~~~~-~~~~ttR~~~--~~e~~g~~~~~-----~~~~~~~~~~---~~~ 76 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFPS-RFRF-SISCTTRNKR--EKETNGVDYYF-----VDKDDFERKL---KEG 76 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCTT-TEEE-CCEEECSCCC--TTCCBTTTEEE-----CCHHHHHHHH---HTT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCcc-ceee-eeeecCCCCC--CCCCCCcceee-----CCHHHHHHHH---HcC
Confidence 456789999999999999999999998742 1221 1100000000 000000 1111 2223333322 222
Q ss_pred CCccccccCCcCCcCCC-CCccccCCCcEEEEcccccCCchHHhhhc---C-eEEEEe-cChhhhhHHhhhccccccCCC
Q 023701 124 QAVDIPNYDFKSYKNNV-FPARRVNPSDVILLEGILVFHDSRVRELM---N-MKIFVD-TDADVRLARRIRRDTVEKGRD 197 (278)
Q Consensus 124 ~~i~~~~~~~~~~~~~~-~~~~~~~~~~iiiidg~~~~~d~~~~~~~---d-~~I~l~-~~~e~~l~R~~~R~~~~~~~~ 197 (278)
..+....+......... .....+..+..+|+|...... ..+...+ + +.|||+ ++.+++.+|+.+|... .
T Consensus 77 ~~~~~~~~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~-~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~~----~ 151 (204)
T 2qor_A 77 QFLEFDKYANNFYGTLKSEYDLAVGEGKICLFEMNINGV-KQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNTE----K 151 (204)
T ss_dssp CEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEECCHHHH-HHHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTTS----C
T ss_pred CCEEeHHhCCCeecCCHHHHHHHHHcCCeEEEEECHHHH-HHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCCC----C
Confidence 22222222111111100 001133467788887644332 2334433 3 889998 8999999999887521 2
Q ss_pred HHHHHHHHhhcccccccccccc-ccccccEEeeCCCCcHHHHHHHHHHHHHhh
Q 023701 198 IATVLDQYSKFVKPAFDDFILP-TKKYADIIIPRGGDNHVAIDLIVQHIRTKL 249 (278)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~~-~~~~aD~iI~n~~~~~~~~~~i~~~i~~~l 249 (278)
.+.+..++.....+. .+ +...+|++|.|+ +.+..++.+++.|...+
T Consensus 152 ~~~i~~rl~~~~~~~-----~~~~~~~~d~vi~n~-~~e~~~~~i~~~i~~~~ 198 (204)
T 2qor_A 152 PEEINKRMQELTREM-----DEADKVGFNYFIVND-DLARTYAELREYLLGSY 198 (204)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHTCSEEEECS-SHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH-----HHhhhccCcEEEECc-CHHHHHHHHHHHHHHHh
Confidence 333333332211111 01 246789999887 44455666666665543
No 88
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.27 E-value=4.5e-12 Score=105.18 Aligned_cols=35 Identities=14% Similarity=0.304 Sum_probs=30.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 023701 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYH 87 (278)
Q Consensus 50 iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~ 87 (278)
.|+|+|++||||||+|+.|++.+ ++.+++.|++++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~---~~~~i~~d~~~r 36 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY---GIPHISTGDMFR 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS---SCCEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCcEEeHHHHHH
Confidence 58999999999999999999987 577888876553
No 89
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.27 E-value=9.5e-12 Score=105.51 Aligned_cols=39 Identities=13% Similarity=0.023 Sum_probs=34.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
..++++|+|+|++||||||+|+.|++.+ ++.+++.|+..
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~---g~~~is~~~~~ 64 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSH---CYCHLSTGDLL 64 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHH---CCEEEEHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHh---CCeEEecHHHH
Confidence 4578999999999999999999999988 57888887655
No 90
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.26 E-value=8.2e-12 Score=102.91 Aligned_cols=31 Identities=16% Similarity=0.300 Sum_probs=28.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEc
Q 023701 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVN 81 (278)
Q Consensus 48 ~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~ 81 (278)
..+|+|+|++||||||+++.|++.| ++.+++
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l---g~~~~D 36 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY---NIPLYS 36 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT---TCCEEC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh---CcCEEC
Confidence 4589999999999999999999998 577887
No 91
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.26 E-value=6.5e-12 Score=103.64 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=26.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
..++++|+|+|++||||||+++.|++.++
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999999875
No 92
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.25 E-value=1.8e-11 Score=98.27 Aligned_cols=39 Identities=21% Similarity=0.314 Sum_probs=30.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
++++|.|+|++||||||+++.|++.++ ..+..++.|.+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~-~~~~~~~~D~~~ 40 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP-EPWLAFGVDSLI 40 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS-SCEEEEEHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC-CCeEEeccchHh
Confidence 356899999999999999999999985 234555666543
No 93
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.25 E-value=4.1e-12 Score=120.87 Aligned_cols=136 Identities=12% Similarity=0.142 Sum_probs=84.6
Q ss_pred hccCCc-eeeeCC---ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CC-------
Q 023701 9 MIEASS-GVHFSG---FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QR------- 76 (278)
Q Consensus 9 ~~~~~~-~~~~~~---~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~-~~------- 76 (278)
+|+-++ ++.|++ .+|+|||| ++++|.+++|+||||||||||++.|++.++| .|
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~i~l---------------~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~ 405 (582)
T 3b5x_A 341 EVDVKDVTFTYQGKEKPALSHVSF---------------SIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGH 405 (582)
T ss_pred eEEEEEEEEEcCCCCccccccceE---------------EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCE
Confidence 455555 677763 35888888 9999999999999999999999999998865 23
Q ss_pred -------------EEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc-------------cccc
Q 023701 77 -------------VVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV-------------DIPN 130 (278)
Q Consensus 77 -------------~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i-------------~~~~ 130 (278)
+.++.++.+..+.+..++..++.. + ..+.+.+.+.++.......+ ....
T Consensus 406 ~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~----~-~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~ 480 (582)
T 3b5x_A 406 DVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAE----G-EYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTS 480 (582)
T ss_pred EhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCC----C-CCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCc
Confidence 344444443322344343332210 1 12333444444332211100 0123
Q ss_pred cCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023701 131 YDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
++.+..+|...++..+.+++++++|+|.+.+|+.
T Consensus 481 LSgGq~qr~~iAral~~~p~illlDEpts~LD~~ 514 (582)
T 3b5x_A 481 LSGGQRQRVAIARALLRDAPVLILDEATSALDTE 514 (582)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHH
Confidence 4445555555566678899999999999999875
No 94
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.24 E-value=3.2e-12 Score=106.02 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=30.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 023701 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYH 87 (278)
Q Consensus 50 iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~ 87 (278)
.|+|+|++||||||+|+.|++.+ ++.+++.|++++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~---~~~~i~~d~~~r 36 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY---EIPHISTGDMFR 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---CCCEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCcEeeHHHHHH
Confidence 68999999999999999999988 477788876553
No 95
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.24 E-value=1.7e-11 Score=99.84 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=26.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcC
Q 023701 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ 82 (278)
Q Consensus 49 ~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~ 82 (278)
++|+|+|++||||||+++.|++.+...++.++..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 3799999999999999999999984334555544
No 96
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.23 E-value=5.4e-12 Score=105.61 Aligned_cols=193 Identities=15% Similarity=0.145 Sum_probs=88.1
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG 123 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 123 (278)
...++.+|+|+|++||||||+++.|++.+ ++.+++.|.+.. ......+.......++.......+..+..+
T Consensus 10 m~~~~~iI~i~g~~gsGk~~i~~~la~~l---g~~~~d~~~~~~------~a~~~g~~~~~~~~~~E~~~~~~~~~~~~~ 80 (223)
T 3hdt_A 10 MGNKNLIITIEREYGSGGRIVGKKLAEEL---GIHFYDDDILKL------ASEKSAVGEQFFRLADEKAGNNLLYRLGGG 80 (223)
T ss_dssp --CCCEEEEEEECTTSCHHHHHHHHHHHH---TCEEECHHHHHH------HHHCC-------------------------
T ss_pred cCCCCeEEEEeCCCCCCHHHHHHHHHHHc---CCcEEcHHHHHH------HHHHcCCCHHHHHHHHhhccccHHHHHhcc
Confidence 34457899999999999999999999998 588888653221 011001000000001100000000001000
Q ss_pred C---Ccccccc--CCcCCcC----CCCCccccCCCcEEEEcccccCCchHH---hhh-cCeEEEEecChhhhhHHhhhcc
Q 023701 124 Q---AVDIPNY--DFKSYKN----NVFPARRVNPSDVILLEGILVFHDSRV---REL-MNMKIFVDTDADVRLARRIRRD 190 (278)
Q Consensus 124 ~---~i~~~~~--~~~~~~~----~~~~~~~~~~~~iiiidg~~~~~d~~~---~~~-~d~~I~l~~~~e~~l~R~~~R~ 190 (278)
. ....+.+ +....+. +......+....-+|+.|..+.+ -+ .+. -.++|||++|.+.+.+|+.+|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~i~~la~~~~~Vi~Grggg~--vl~~~~~~~~~~~VfL~A~~e~r~~Ri~~~~ 158 (223)
T 3hdt_A 81 RKIDLHSKPSPNDKLTSPENLFKFQSEVMRELAESEPCIFVGRAAGY--VLDQDEDIERLIRIFVYTDKVKKVQRVMEVD 158 (223)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHSCEEEESTTHHH--HHHHCTTCCEEEEEEEECCHHHHHHHHHHHH
T ss_pred cccccccccccccccccHHHHHHHHHHHHHHHHhCCCEEEEeCCcch--hcccccCCCCeEEEEEECCHHHHHHHHHHhc
Confidence 0 0000011 0000000 00001112222235666654432 12 122 2589999999999999998875
Q ss_pred ccccCCCHHHHHHHHhhcccccccccc--cc-ccccccEEeeCCCCcHHHHHHHHHHHHHhhcc
Q 023701 191 TVEKGRDIATVLDQYSKFVKPAFDDFI--LP-TKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQ 251 (278)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~-~~~~aD~iI~n~~~~~~~~~~i~~~i~~~l~~ 251 (278)
+.... .....+........+.|..|. .| ....+|++|+++..+ ++++++.|...+..
T Consensus 159 ~~~~~-~a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~l~---~eevv~~I~~~i~~ 218 (223)
T 3hdt_A 159 CIDEE-RAKRRIKKIEKERKEYYKYFTGSEWHSMKNYDLPINTTKLT---LEETAELIKAYIRL 218 (223)
T ss_dssp TCCHH-HHHHHHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECTTCC---HHHHHHHHHHHHHH
T ss_pred CCCHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcccCeEEEECCCCC---HHHHHHHHHHHHHH
Confidence 43221 222333333333444454332 12 335799999988654 45555555554443
No 97
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.22 E-value=9.2e-11 Score=96.25 Aligned_cols=43 Identities=28% Similarity=0.352 Sum_probs=35.3
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEE--EEcCCCCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVV--LVNQDSFY 86 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~--~i~~D~~~ 86 (278)
...++.+|+|+|+|||||||+++.|++.+...|.. +++.|++.
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVR 65 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhh
Confidence 77899999999999999999999999998533333 77776554
No 98
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.22 E-value=1.5e-11 Score=99.10 Aligned_cols=39 Identities=18% Similarity=0.132 Sum_probs=32.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
..++.+|+|+|++||||||+++.|++.+ +..+++.|+++
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~---~~~~~~~d~~~ 46 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASKS---GLKYINVGDLA 46 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHHH---CCEEEEHHHHH
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHHh---CCeEEEHHHHH
Confidence 3456789999999999999999999998 47778777644
No 99
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.22 E-value=1.8e-10 Score=94.72 Aligned_cols=30 Identities=20% Similarity=0.333 Sum_probs=26.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCC
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQR 76 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~l~~~~ 76 (278)
++++|+|+|++||||||+++.|++.++..+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 468999999999999999999999986443
No 100
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.21 E-value=1.8e-11 Score=98.90 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=32.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
.++++|+|+|++||||||+++.|++.+ +..+++.|+++
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l---~~~~i~~d~~~ 39 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL---GFKKLSTGDIL 39 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH---TCEEECHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh---CCeEecHHHHH
Confidence 357899999999999999999999988 47888877654
No 101
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.21 E-value=1.2e-11 Score=100.25 Aligned_cols=39 Identities=23% Similarity=0.289 Sum_probs=31.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCC--EEEEcCCCCC
Q 023701 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQR--VVLVNQDSFY 86 (278)
Q Consensus 48 ~~iI~I~G~sGSGKTTla~~L~~~l~~~~--~~~i~~D~~~ 86 (278)
+++|+|+|++||||||+++.|++.++..+ +.+++.|+++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~ 43 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVM 43 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHH
Confidence 56899999999999999999999885333 6677765543
No 102
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.19 E-value=1.9e-10 Score=92.51 Aligned_cols=32 Identities=22% Similarity=0.216 Sum_probs=27.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCE
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRV 77 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~ 77 (278)
.++.+|+|+|++||||||+++.|++.+.+.+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~ 34 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGI 34 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 46889999999999999999999998843343
No 103
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=99.19 E-value=8e-12 Score=102.63 Aligned_cols=180 Identities=14% Similarity=0.182 Sum_probs=70.7
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG 123 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 123 (278)
.+.++.+|+|+|++||||||+++.|++.+.+ ... +........... ....-..+.|.+ .+.+... ...+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~-~~~-~~i~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~---~~~~ 70 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPST-SYK-YSISMTTRQMRE-GEVDGVDYFFKT-----RDAFEAL---IKDD 70 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTC-CEE-CCCCEECSCCCT-TCCBTTTBEECC-----HHHHHHH---HHTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCC-CeE-EecccccCCCCC-CccCCCceEEcC-----HHHHHHH---HHcC
Confidence 3567889999999999999999999998732 222 111100000000 000001122221 1222221 1222
Q ss_pred CCccccccCCcCCcCCC-CCccccCCCcEEEEcccccCCchHHhhhc-C-eEEEEe-cChhhhhHHhhhccccccCCCHH
Q 023701 124 QAVDIPNYDFKSYKNNV-FPARRVNPSDVILLEGILVFHDSRVRELM-N-MKIFVD-TDADVRLARRIRRDTVEKGRDIA 199 (278)
Q Consensus 124 ~~i~~~~~~~~~~~~~~-~~~~~~~~~~iiiidg~~~~~d~~~~~~~-d-~~I~l~-~~~e~~l~R~~~R~~~~~~~~~~ 199 (278)
..+..+.+......... .....+..+..+++|+++.+. ..+...+ | ..+|+. ++.+++.+|+.+|+... .+
T Consensus 71 ~~~~~~~~~~~~~g~~~~~i~~~l~~g~~vv~d~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~Rl~~R~~~~----~~ 145 (207)
T 2j41_A 71 QFIEYAEYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGA-KQVRKKFPDALFIFLAPPSLEHLRERLVGRGTES----DE 145 (207)
T ss_dssp CEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEECCGGGH-HHHHHHCTTSEEEEEECCC---------------------
T ss_pred CeEEEEeECCeecCCCHHHHHHHHHcCCeEEEEECHHHH-HHHHHhcCCeEEEEEECCCHHHHHHHHHhcCCCC----HH
Confidence 22222222211000000 001123446789999987663 4455555 6 455554 35678889988885322 12
Q ss_pred HHHHHHhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHH
Q 023701 200 TVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIR 246 (278)
Q Consensus 200 ~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~i~~~i~ 246 (278)
.+...+.. ..+.. .+...+|++|+|+ +.+...+.+.+.+.
T Consensus 146 ~~~~rl~~-~~~~~-----~~~~~~d~vI~n~-~~e~~~~~i~~~l~ 185 (207)
T 2j41_A 146 KIQSRINE-ARKEV-----EMMNLYDYVVVND-EVELAKNRIQCIVE 185 (207)
T ss_dssp -----------CGG-----GGGGGCSEEEECS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHH-----hccccCCEEEECC-CHHHHHHHHHHHHH
Confidence 22222211 11111 1245789999886 33233444444443
No 104
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.19 E-value=1.5e-11 Score=102.53 Aligned_cols=37 Identities=24% Similarity=0.562 Sum_probs=31.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
++++|+|+|++||||||+++.|++.++ ..+++.|+++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~---~~~i~~d~~~ 40 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ---LAHISAGDLL 40 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC---CEECCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC---CceecHHHHH
Confidence 567899999999999999999999984 6777776655
No 105
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.19 E-value=3.2e-10 Score=97.00 Aligned_cols=163 Identities=16% Similarity=0.208 Sum_probs=86.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEE--cCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLV--NQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG 123 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i--~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 123 (278)
.++++|+|+|++||||||+++.|++.+...+..++ +.|.+...+. . |... ....+........
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~--------~--~~~~---~e~~~~~~~~~~i-- 66 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFP--------V--WKEK---YEEFIKKSTYRLI-- 66 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSS--------S--CCGG---GHHHHHHHHHHHH--
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHh--------h--hhHH---HHHHHHHHHHHHH--
Confidence 35789999999999999999999998532244444 6665332211 0 1110 0111111111000
Q ss_pred CCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCc--hHHhhh------cCeEEEEecChhhhhHHhhhccccccC
Q 023701 124 QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD--SRVREL------MNMKIFVDTDADVRLARRIRRDTVEKG 195 (278)
Q Consensus 124 ~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d--~~~~~~------~d~~I~l~~~~e~~l~R~~~R~~~~~~ 195 (278)
...+.. ..+|+|+...... ..+... .+.+|||++|.+++.+|..+|.. .
T Consensus 67 -------------------~~~l~~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~---~ 123 (260)
T 3a4m_A 67 -------------------DSALKN-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGE---K 123 (260)
T ss_dssp -------------------HHHHTT-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTC---S
T ss_pred -------------------HHHhhC-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCC---C
Confidence 011223 5678887543211 112221 37899999999999999988852 1
Q ss_pred CCHHHHHHHHhhcccccccccccccc-ccccEEeeCCCCcHHHHHHHHHHHHHhhccCc
Q 023701 196 RDIATVLDQYSKFVKPAFDDFILPTK-KYADIIIPRGGDNHVAIDLIVQHIRTKLGQHD 253 (278)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~i~~~~-~~aD~iI~n~~~~~~~~~~i~~~i~~~l~~~~ 253 (278)
...+.+...+.....|. ..+. ..++++|+++.+. .++++++.|.+.+....
T Consensus 124 ~~~~~l~~~~~~~e~~~-----~~~~~~~~~~~Id~~~~~--~~~ei~~~I~~~l~~~~ 175 (260)
T 3a4m_A 124 IPNEVIKKMYEKFDEPG-----KKYKWDEPFLIIDTTKDI--DFNEIAKKLIEKSKEIP 175 (260)
T ss_dssp SCHHHHHHHHHHCCCTT-----SSCGGGCCSEEEETTSCC--CHHHHHHHHHHHHTSCC
T ss_pred CCHHHHHHHHHHhcCcc-----ccCCCCCCEEEEeCCCCC--CHHHHHHHHHhcccCCC
Confidence 12222222222211111 1011 4588999887521 26677777776665443
No 106
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.19 E-value=7.6e-11 Score=97.30 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=25.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
.+++++|+|+|++||||||+++.|++.++
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35678999999999999999999999875
No 107
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.19 E-value=4.9e-12 Score=120.33 Aligned_cols=136 Identities=13% Similarity=0.137 Sum_probs=85.6
Q ss_pred hccCCc-eeeeCC---ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC---------
Q 023701 9 MIEASS-GVHFSG---FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--------- 75 (278)
Q Consensus 9 ~~~~~~-~~~~~~---~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~--------- 75 (278)
+|+-.+ ++.|++ ..|+|||| ++++|.+++|+||||||||||++.|++.++|.
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~v~~---------------~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~ 405 (582)
T 3b60_A 341 DLEFRNVTFTYPGREVPALRNINL---------------KIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGH 405 (582)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEE---------------EECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTE
T ss_pred cEEEEEEEEEcCCCCCccccceeE---------------EEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCE
Confidence 455555 677762 35888888 99999999999999999999999999998652
Q ss_pred ------------CEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCC-----------c--cccc
Q 023701 76 ------------RVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA-----------V--DIPN 130 (278)
Q Consensus 76 ------------~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~-----------i--~~~~ 130 (278)
.+.++.++.+..+.+..++..++.. + ..+.+.+.+.++....... + ....
T Consensus 406 ~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~----~-~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~ 480 (582)
T 3b60_A 406 DLREYTLASLRNQVALVSQNVHLFNDTVANNIAYART----E-EYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVL 480 (582)
T ss_dssp ETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTT----S-CCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCS
T ss_pred EccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCC----C-CCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCC
Confidence 2455555554433455554443220 1 1233344444432211100 0 0013
Q ss_pred cCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023701 131 YDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
++.+..+|...++..+.+++++++|+|.+.+|+.
T Consensus 481 LSgGq~qrl~iAral~~~p~illlDEpts~LD~~ 514 (582)
T 3b60_A 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTE 514 (582)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHH
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECccccCCHH
Confidence 4444445555556667899999999999999875
No 108
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.17 E-value=5.4e-11 Score=97.32 Aligned_cols=74 Identities=12% Similarity=0.296 Sum_probs=43.3
Q ss_pred hhcCeEEEEecChhhhhHHhhhccccccCCCHHHHH-HHHhhcccccccccccccc-ccccEEeeCCCCcHHHHHHHHHH
Q 023701 167 ELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVL-DQYSKFVKPAFDDFILPTK-KYADIIIPRGGDNHVAIDLIVQH 244 (278)
Q Consensus 167 ~~~d~~I~l~~~~e~~l~R~~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~-~~aD~iI~n~~~~~~~~~~i~~~ 244 (278)
..+|.+|||+++.+++++|+.+|... .+... ..+.......|..++.++. ..++++|+++++ ++.+.++
T Consensus 123 ~~~d~vi~L~~~~e~~~~Rl~~R~r~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~~~----~~~v~~~ 193 (205)
T 2jaq_A 123 LSFDIVIYLRVSTKTAISRIKKRGRS-----EELLIGEEYWETLNKNYEEFYKQNVYDFPFFVVDAELD----VKTQIEL 193 (205)
T ss_dssp CCCSEEEEEECCHHHHHHHHHHHTCH-----HHHHSCHHHHHHHHHHHHHHHHHHTTTSCEEEEETTSC----HHHHHHH
T ss_pred CCCCEEEEEeCCHHHHHHHHHHcCCh-----hhhcCcHHHHHHHHHHHHHHHHHccccCcEEEEECCCC----HHHHHHH
Confidence 35789999999999999999887421 11100 0122222233333333334 678999998763 4455555
Q ss_pred HHHhh
Q 023701 245 IRTKL 249 (278)
Q Consensus 245 i~~~l 249 (278)
|.+.+
T Consensus 194 I~~~l 198 (205)
T 2jaq_A 194 IMNKL 198 (205)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 109
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.16 E-value=8.2e-12 Score=119.09 Aligned_cols=137 Identities=12% Similarity=0.113 Sum_probs=85.8
Q ss_pred ccCCc-eeeeCC----ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC---------
Q 023701 10 IEASS-GVHFSG----FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--------- 75 (278)
Q Consensus 10 ~~~~~-~~~~~~----~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~--------- 75 (278)
|+-.+ ++.|++ ..|+|||| ++++|.+++|.||||||||||++.|++.++|.
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl---------------~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~ 406 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSL---------------SIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGH 406 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEE---------------EECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTE
T ss_pred EEEEEEEEEeCCCCCCccccceEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCE
Confidence 33344 666753 35788888 99999999999999999999999999988651
Q ss_pred ------------CEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCC---------Cccc----cc
Q 023701 76 ------------RVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ---------AVDI----PN 130 (278)
Q Consensus 76 ------------~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~---------~i~~----~~ 130 (278)
.+.++.++.+..+.+..++..++.... ...+.+.+.+.++...... .... ..
T Consensus 407 ~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~ 483 (595)
T 2yl4_A 407 DIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDP---SSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL 483 (595)
T ss_dssp ETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSST---TTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCC
T ss_pred EhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCc---cccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCc
Confidence 245556665443345555554332110 1133444555554332110 0000 23
Q ss_pred cCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023701 131 YDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
++.+..+|...++..+.+++++++|+|.+.+|+.
T Consensus 484 LSgGq~qrv~iAral~~~p~illlDEpts~LD~~ 517 (595)
T 2yl4_A 484 LSGGQKQRIAIARALLKNPKILLLDEATSALDAE 517 (595)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHH
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHH
Confidence 3444444555556667899999999999999875
No 110
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.16 E-value=2.1e-12 Score=108.53 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=22.5
Q ss_pred ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHH-HHhC
Q 023701 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMII-QQLH 73 (278)
Q Consensus 21 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~-~~l~ 73 (278)
...+++|| .+.+|.+|+|+||+||||||+++.|+ +.++
T Consensus 15 ~~~~~~sl---------------~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSM---------------LKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------C---------------CEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCc---------------ccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 34788999 89999999999999999999999999 8764
No 111
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.16 E-value=8.9e-11 Score=95.08 Aligned_cols=37 Identities=24% Similarity=0.201 Sum_probs=29.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCC--EEEEcCCC
Q 023701 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQR--VVLVNQDS 84 (278)
Q Consensus 48 ~~iI~I~G~sGSGKTTla~~L~~~l~~~~--~~~i~~D~ 84 (278)
+++|+|+|++||||||+++.|++.++..+ +.+++.|+
T Consensus 1 M~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~ 39 (194)
T 1nks_A 1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGD 39 (194)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECCh
Confidence 36899999999999999999999985322 56665443
No 112
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.15 E-value=4.7e-11 Score=99.35 Aligned_cols=43 Identities=26% Similarity=0.429 Sum_probs=36.3
Q ss_pred hhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023701 41 AENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 41 ~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
+....+++++|.|.||+||||||.|+.|++.+ ++..|+..+.+
T Consensus 22 ~~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~---g~~hIstGdll 64 (217)
T 3umf_A 22 TDQKLAKAKVIFVLGGPGSGKGTQCEKLVQKF---HFNHLSSGDLL 64 (217)
T ss_dssp --CCTTSCEEEEEECCTTCCHHHHHHHHHHHH---CCEEECHHHHH
T ss_pred cchhccCCcEEEEECCCCCCHHHHHHHHHHHH---CCceEcHHHHH
Confidence 44467889999999999999999999999998 58888886655
No 113
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.14 E-value=6.6e-12 Score=119.76 Aligned_cols=134 Identities=13% Similarity=0.160 Sum_probs=83.7
Q ss_pred ccCCc-eeeeCC--ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-----------
Q 023701 10 IEASS-GVHFSG--FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----------- 75 (278)
Q Consensus 10 ~~~~~-~~~~~~--~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~----------- 75 (278)
|+-.+ +++|++ .+|+|||| .+++|.+++|+||||||||||++.|++.+++.
T Consensus 355 i~~~~v~~~y~~~~~~l~~isl---------------~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i 419 (598)
T 3qf4_B 355 IEFKNVWFSYDKKKPVLKDITF---------------HIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDI 419 (598)
T ss_dssp EEEEEEECCSSSSSCSCCSEEE---------------ECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEG
T ss_pred EEEEEEEEECCCCCccccceEE---------------EEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEh
Confidence 33344 566754 46888888 99999999999999999999999999988652
Q ss_pred ----------CEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHH---------HhhcCCCcc----ccccC
Q 023701 76 ----------RVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSME---------KLRHGQAVD----IPNYD 132 (278)
Q Consensus 76 ----------~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~---------~~~~~~~i~----~~~~~ 132 (278)
.+.++.++.+....+..++..++.... +.+...+.++ .+..|-... -..++
T Consensus 420 ~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LS 493 (598)
T 3qf4_B 420 RKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGA------TDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLS 493 (598)
T ss_dssp GGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTC------CTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSC
T ss_pred hhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCC------CHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCC
Confidence 255666665554455555554332111 1112222221 111110000 01344
Q ss_pred CcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023701 133 FKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
.+..+|...++..+.+++++++|+|.+.+|+.
T Consensus 494 gGq~Qrv~iAral~~~p~illlDEpts~LD~~ 525 (598)
T 3qf4_B 494 QGQRQLLAITRAFLANPKILILDEATSNVDTK 525 (598)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEECCCCTTCCHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccCCCHH
Confidence 44455555566678899999999999999874
No 114
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.14 E-value=3.7e-10 Score=91.37 Aligned_cols=41 Identities=24% Similarity=0.325 Sum_probs=32.9
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCC--EEEEcCCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQR--VVLVNQDS 84 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~--~~~i~~D~ 84 (278)
...++.+|+|+|++||||||+++.|++.+...+ +.+++.|.
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 456789999999999999999999999985333 45666554
No 115
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.14 E-value=9.4e-12 Score=118.27 Aligned_cols=129 Identities=14% Similarity=0.161 Sum_probs=82.3
Q ss_pred eeeeCC---ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC----------------
Q 023701 15 GVHFSG---FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------- 75 (278)
Q Consensus 15 ~~~~~~---~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~---------------- 75 (278)
++.|++ .+|+|||| ++++|.+++|+||||||||||++.|.+.++|.
T Consensus 346 ~~~y~~~~~~~l~~isl---------------~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~ 410 (578)
T 4a82_A 346 SFQYNDNEAPILKDINL---------------SIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLT 410 (578)
T ss_dssp EECSCSSSCCSEEEEEE---------------EECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCH
T ss_pred EEEcCCCCCcceeeeEE---------------EECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCH
Confidence 556643 35777777 99999999999999999999999999988652
Q ss_pred -----CEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhc---------CCC--ccc--cccCCcCCc
Q 023701 76 -----RVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRH---------GQA--VDI--PNYDFKSYK 137 (278)
Q Consensus 76 -----~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~---------~~~--i~~--~~~~~~~~~ 137 (278)
.+.++.++.+....+..++..++. +. ...+...+.++.... |-. +.. ..++.+..+
T Consensus 411 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Q 484 (578)
T 4a82_A 411 GSLRNQIGLVQQDNILFSDTVKENILLGR-----PT-ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQ 484 (578)
T ss_dssp HHHHHTEEEECSSCCCCSSBHHHHHGGGC-----SS-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHH
T ss_pred HHHhhheEEEeCCCccCcccHHHHHhcCC-----CC-CCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHH
Confidence 356666666554445555554432 11 122333333332211 100 000 133444445
Q ss_pred CCCCCccccCCCcEEEEcccccCCchH
Q 023701 138 NNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 138 ~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
|...++..+.+++++++|+|.+.+|+.
T Consensus 485 rv~lAral~~~p~illlDEpts~LD~~ 511 (578)
T 4a82_A 485 RLSIARIFLNNPPILILDEATSALDLE 511 (578)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTCCHH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHH
Confidence 555556667899999999999999874
No 116
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.12 E-value=2.4e-11 Score=98.67 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=23.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 48 PFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 48 ~~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
+.+++|+|||||||||++++|++.++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45799999999999999999999875
No 117
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=99.12 E-value=5e-11 Score=98.59 Aligned_cols=28 Identities=21% Similarity=0.386 Sum_probs=26.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
++|.+|+|+|||||||||+++.|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5788999999999999999999999875
No 118
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.11 E-value=3.1e-11 Score=104.86 Aligned_cols=121 Identities=17% Similarity=0.164 Sum_probs=77.5
Q ss_pred ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC--------CEEEEcCCCCCCCCCHH
Q 023701 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--------RVVLVNQDSFYHNLTEQ 92 (278)
Q Consensus 21 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~--------~~~~i~~D~~~~~~~~~ 92 (278)
.+|++||| .+.+|.+++|.|+||||||||++.|++.+.+. .+.++.++..+...+..
T Consensus 52 ~vl~~isl---------------~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~ 116 (290)
T 2bbs_A 52 PVLKDINF---------------KIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIK 116 (290)
T ss_dssp CSEEEEEE---------------EECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBHH
T ss_pred eEEEeeEE---------------EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcccHH
Confidence 57999999 99999999999999999999999999987641 35667776544334555
Q ss_pred HHHHccccCCCCCCcccHHHHHHHHHHh------hcCCC-----c--cccccCCcCCcCCCCCccccCCCcEEEEccccc
Q 023701 93 ELARVHEYNFDHPDAFDTEKLLSSMEKL------RHGQA-----V--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILV 159 (278)
Q Consensus 93 ~~~~~~~~~~~~~~~~d~~~~~~~l~~~------~~~~~-----i--~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~ 159 (278)
++.. + +. +......+.+... ..-.. + ....++.+..++...++..+.+++++++|+|++
T Consensus 117 enl~-~---~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts 188 (290)
T 2bbs_A 117 ENII-G---VS----YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFG 188 (290)
T ss_dssp HHHH-T---TC----CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTT
T ss_pred HHhh-C---cc----cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcc
Confidence 5443 2 11 1111111121111 10000 0 012444455555555566778999999999999
Q ss_pred CCchH
Q 023701 160 FHDSR 164 (278)
Q Consensus 160 ~~d~~ 164 (278)
.+|+.
T Consensus 189 ~LD~~ 193 (290)
T 2bbs_A 189 YLDVL 193 (290)
T ss_dssp TCCHH
T ss_pred cCCHH
Confidence 99974
No 119
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=99.10 E-value=5.8e-12 Score=111.25 Aligned_cols=40 Identities=30% Similarity=0.572 Sum_probs=35.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCC--CCCCC
Q 023701 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSF--YHNLT 90 (278)
Q Consensus 48 ~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~--~~~~~ 90 (278)
+.+|+|+||+||||||||+.|++.++ ..++++|++ |+.+.
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~---~~iis~Ds~qvYr~~~ 48 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFN---GEIISGDSMQVYQGMD 48 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT---EEEEECCSSTTBTTCC
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcC---Cceecccccccccccc
Confidence 46999999999999999999999984 899999998 76653
No 120
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.10 E-value=3.8e-10 Score=93.31 Aligned_cols=51 Identities=25% Similarity=0.291 Sum_probs=38.4
Q ss_pred CchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC-CCC--EEEEcCCCCC
Q 023701 36 PTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH-DQR--VVLVNQDSFY 86 (278)
Q Consensus 36 ~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~-~~~--~~~i~~D~~~ 86 (278)
+....+.....++.+|+|+|++||||||+++.|++.+. ..| +.+++.|.+.
T Consensus 13 ~~~~r~~~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 13 TRSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp CHHHHHHHHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CHHHhhcccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 43444444678899999999999999999999999885 223 6777665543
No 121
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=99.09 E-value=1.7e-12 Score=109.10 Aligned_cols=28 Identities=32% Similarity=0.415 Sum_probs=26.1
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
...+|.+|+|.|++||||||+++.|++.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 5578999999999999999999999997
No 122
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.09 E-value=8.3e-11 Score=98.89 Aligned_cols=39 Identities=13% Similarity=0.152 Sum_probs=33.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
...++.|+|.|++||||||+++.|++.+ ++.+++.|+++
T Consensus 13 ~~~~~~I~l~G~~GsGKsT~a~~La~~l---~~~~i~~d~li 51 (233)
T 1ak2_A 13 SPKGVRAVLLGPPGAGKGTQAPKLAKNF---CVCHLATGDML 51 (233)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHHH---TCEEEEHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh---CCceecHHHHH
Confidence 4556789999999999999999999998 47888887655
No 123
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.09 E-value=6.8e-12 Score=129.21 Aligned_cols=140 Identities=11% Similarity=0.119 Sum_probs=92.1
Q ss_pred ccccceeeecccCC-CCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC---------------------CCEE
Q 023701 21 FHMDGLEVRNKETG-QPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD---------------------QRVV 78 (278)
Q Consensus 21 ~~l~~i~~~~~~~~-~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~---------------------~~~~ 78 (278)
-.++||+|+|.++. .|.......++++|..|||+|++|||||||++.|.+.+.| ..+.
T Consensus 1077 I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~ 1156 (1321)
T 4f4c_A 1077 VIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIA 1156 (1321)
T ss_dssp EEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEE
T ss_pred EEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 34666666665543 2555555559999999999999999999999999999875 3467
Q ss_pred EEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhc---------CCCccc----cccCCcCCcCCCCCccc
Q 023701 79 LVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRH---------GQAVDI----PNYDFKSYKNNVFPARR 145 (278)
Q Consensus 79 ~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~---------~~~i~~----~~~~~~~~~~~~~~~~~ 145 (278)
++++|.+...-+.+++..++. +|.....+.+.+.++.... |-...+ ..++.+..++...++..
T Consensus 1157 ~V~Qdp~LF~gTIreNI~~gl----d~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAl 1232 (1321)
T 4f4c_A 1157 IVSQEPTLFDCSIAENIIYGL----DPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARAL 1232 (1321)
T ss_dssp EECSSCCCCSEEHHHHHSSSS----CTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHH
T ss_pred EECCCCEeeCccHHHHHhccC----CCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHH
Confidence 788888776666666654332 2334555666665554332 111111 12333333444455667
Q ss_pred cCCCcEEEEcccccCCchH
Q 023701 146 VNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 146 ~~~~~iiiidg~~~~~d~~ 164 (278)
+.+++++++|++.+..|++
T Consensus 1233 lr~~~ILiLDEaTSaLD~~ 1251 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTE 1251 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSH
T ss_pred HhCCCEEEEeCccccCCHH
Confidence 7899999999999998753
No 124
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.07 E-value=9.6e-11 Score=110.14 Aligned_cols=137 Identities=13% Similarity=0.118 Sum_probs=84.6
Q ss_pred ccCCc-eeeeCCccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC---------CCEEE
Q 023701 10 IEASS-GVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD---------QRVVL 79 (278)
Q Consensus 10 ~~~~~-~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~---------~~~~~ 79 (278)
++..+ .+.|+++.|..+++ .+.++.+++|.|+||||||||++.|++.+.+ ..+.+
T Consensus 270 l~~~~l~~~~~~~~l~~~~~---------------~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~ 334 (538)
T 3ozx_A 270 MKWTKIIKKLGDFQLVVDNG---------------EAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY 334 (538)
T ss_dssp EEECCEEEEETTEEEEECCE---------------EEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEE
T ss_pred EEEcceEEEECCEEEEeccc---------------eECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEe
Confidence 44444 67788877777777 7899999999999999999999999998764 23455
Q ss_pred EcCCCCC-CCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCcCCCCCccccCCCcEEEEcc
Q 023701 80 VNQDSFY-HNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEG 156 (278)
Q Consensus 80 i~~D~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~iiiidg 156 (278)
+.++.+. ...+..++.......+... ......+.++.+...... ....++.+..+++..++..+.+++++++|+
T Consensus 335 ~~q~~~~~~~~tv~~~l~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDE 411 (538)
T 3ozx_A 335 KPQRIFPNYDGTVQQYLENASKDALST---SSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQ 411 (538)
T ss_dssp ECSSCCCCCSSBHHHHHHHHCSSTTCT---TSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred echhcccccCCCHHHHHHHhhhhccch---hHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 5555332 2234444332211111101 111222333322222111 122455555566666677789999999999
Q ss_pred cccCCchH
Q 023701 157 ILVFHDSR 164 (278)
Q Consensus 157 ~~~~~d~~ 164 (278)
|++.+|+.
T Consensus 412 PT~gLD~~ 419 (538)
T 3ozx_A 412 PSSYLDVE 419 (538)
T ss_dssp TTTTCCHH
T ss_pred CccCCCHH
Confidence 99999974
No 125
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.07 E-value=1.3e-10 Score=110.62 Aligned_cols=136 Identities=18% Similarity=0.098 Sum_probs=89.9
Q ss_pred hccCCc-eeeeCCccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC--------CCEEE
Q 023701 9 MIEASS-GVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--------QRVVL 79 (278)
Q Consensus 9 ~~~~~~-~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~--------~~~~~ 79 (278)
+++..+ ++.|+++.|+.++| .+.+|.+++|.||+|||||||++.|++.+.+ ..+.+
T Consensus 357 ~l~~~~l~~~~~~~~l~~~~~---------------~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~ 421 (607)
T 3bk7_A 357 LVEYPRLVKDYGSFKLEVEPG---------------EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAY 421 (607)
T ss_dssp EEEECCEEEECSSCEEEECCE---------------EEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEE
T ss_pred EEEEeceEEEecceEEEeccc---------------ccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEE
Confidence 455555 77787777777777 7899999999999999999999999998764 23567
Q ss_pred EcCCCCC-CCCCHHHHHHcc-ccCCCCCCcccHHHHHHHHHHhhcCCCccc--cccCCcCCcCCCCCccccCCCcEEEEc
Q 023701 80 VNQDSFY-HNLTEQELARVH-EYNFDHPDAFDTEKLLSSMEKLRHGQAVDI--PNYDFKSYKNNVFPARRVNPSDVILLE 155 (278)
Q Consensus 80 i~~D~~~-~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~iiiid 155 (278)
+.++... ...+..++.... ...+ -+.+...+.+..+........ ..++.+..+++..++..+.+++++++|
T Consensus 422 v~Q~~~~~~~~tv~e~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLD 496 (607)
T 3bk7_A 422 KPQYIKAEYEGTVYELLSKIDSSKL-----NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLD 496 (607)
T ss_dssp ECSSCCCCCSSBHHHHHHHHHHHHH-----HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred EecCccCCCCCcHHHHHHhhhccCC-----CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 7776432 334443332211 0000 012334455655554332222 255555566666667778899999999
Q ss_pred ccccCCchH
Q 023701 156 GILVFHDSR 164 (278)
Q Consensus 156 g~~~~~d~~ 164 (278)
+|++.+|+.
T Consensus 497 EPt~~LD~~ 505 (607)
T 3bk7_A 497 EPSAYLDVE 505 (607)
T ss_dssp CTTTTCCHH
T ss_pred CCccCCCHH
Confidence 999999974
No 126
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.06 E-value=1.1e-10 Score=97.11 Aligned_cols=39 Identities=10% Similarity=0.212 Sum_probs=33.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYH 87 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~ 87 (278)
+++++|+|+|++||||||+++.|++.+ +..+++.|++++
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l---~~~~i~~d~~~~ 40 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF---HAAHLATGDMLR 40 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH---CCEEEEHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc---CceEEehhHHHH
Confidence 456789999999999999999999998 478888877653
No 127
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.06 E-value=1.5e-11 Score=117.03 Aligned_cols=129 Identities=16% Similarity=0.208 Sum_probs=78.0
Q ss_pred eeeeCC---ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-C--------------
Q 023701 15 GVHFSG---FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R-------------- 76 (278)
Q Consensus 15 ~~~~~~---~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~-~-------------- 76 (278)
++.|++ .+|+|||| ++++|.+++|+||||||||||++.|.+.+++. |
T Consensus 348 ~~~y~~~~~~~l~~isl---------------~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~ 412 (587)
T 3qf4_A 348 EFRYFENTDPVLSGVNF---------------SVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKL 412 (587)
T ss_dssp EECSSSSSCCSEEEEEE---------------EECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCH
T ss_pred EEEcCCCCCcceeceEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCH
Confidence 555632 35777777 99999999999999999999999999988652 2
Q ss_pred ------EEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhh---------cCCC--ccc--cccCCcCCc
Q 023701 77 ------VVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLR---------HGQA--VDI--PNYDFKSYK 137 (278)
Q Consensus 77 ------~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~---------~~~~--i~~--~~~~~~~~~ 137 (278)
+.++.++.+....+..++..++ .+. .+.+...+.++... .|-. +.. ..++.+..+
T Consensus 413 ~~~r~~i~~v~Q~~~lf~~tv~eni~~~-----~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQ 486 (587)
T 3qf4_A 413 KDLRGHISAVPQETVLFSGTIKENLKWG-----RED-ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQ 486 (587)
T ss_dssp HHHHHHEEEECSSCCCCSEEHHHHHTTT-----CSS-CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHH
T ss_pred HHHHhheEEECCCCcCcCccHHHHHhcc-----CCC-CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHH
Confidence 3445555444333444433322 111 22233333322111 1100 000 133444445
Q ss_pred CCCCCccccCCCcEEEEcccccCCchH
Q 023701 138 NNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 138 ~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
|...++..+.+++++++|+|.+.+|+.
T Consensus 487 rv~lARal~~~p~illlDEpts~LD~~ 513 (587)
T 3qf4_A 487 RLSIARALVKKPKVLILDDCTSSVDPI 513 (587)
T ss_dssp HHHHHHHHHTCCSEEEEESCCTTSCHH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHH
Confidence 555556677899999999999999875
No 128
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.04 E-value=3e-10 Score=94.84 Aligned_cols=35 Identities=17% Similarity=0.324 Sum_probs=30.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023701 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 49 ~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
++|+|+|++||||||+++.|++.+ +..+++.|+++
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~l---g~~~i~~dd~~ 35 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKY---SLAHIESGGIF 35 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH---TCEEEEHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh---CCeEEchHHHH
Confidence 368999999999999999999998 47788887655
No 129
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.04 E-value=1.8e-11 Score=126.16 Aligned_cols=136 Identities=13% Similarity=0.208 Sum_probs=91.0
Q ss_pred ccceeeecccC-CCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC---------------------CEEEE
Q 023701 23 MDGLEVRNKET-GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RVVLV 80 (278)
Q Consensus 23 l~~i~~~~~~~-~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~---------------------~~~~i 80 (278)
++||+|++..+ +.|........+++|..++|+|++|||||||++.|.+.+++. .+.++
T Consensus 418 ~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v 497 (1321)
T 4f4c_A 418 VENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVV 497 (1321)
T ss_dssp EEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEE
T ss_pred EEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhccccc
Confidence 55555555433 234444444499999999999999999999999999998751 36788
Q ss_pred cCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHH---------HhhcCCCccc----cccCCcCCcCCCCCccccC
Q 023701 81 NQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSME---------KLRHGQAVDI----PNYDFKSYKNNVFPARRVN 147 (278)
Q Consensus 81 ~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~---------~~~~~~~i~~----~~~~~~~~~~~~~~~~~~~ 147 (278)
+++.+..+-+.+++..++. +. .+.+.+.++++ .+..|-...+ ..++.+..+|...++....
T Consensus 498 ~Q~~~Lf~~TI~eNI~~g~-----~~-~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~ 571 (1321)
T 4f4c_A 498 SQEPALFNCTIEENISLGK-----EG-ITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVR 571 (1321)
T ss_dssp CSSCCCCSEEHHHHHHTTC-----TT-CCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTT
T ss_pred CCcceeeCCchhHHHhhhc-----cc-chHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHcc
Confidence 8888887777777776543 22 33444444443 3333333211 1333444455555667788
Q ss_pred CCcEEEEcccccCCchH
Q 023701 148 PSDVILLEGILVFHDSR 164 (278)
Q Consensus 148 ~~~iiiidg~~~~~d~~ 164 (278)
+++++++|++++.+|++
T Consensus 572 ~~~IliLDE~tSaLD~~ 588 (1321)
T 4f4c_A 572 NPKILLLDEATSALDAE 588 (1321)
T ss_dssp CCSEEEEESTTTTSCTT
T ss_pred CCCEEEEecccccCCHH
Confidence 99999999999998753
No 130
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.03 E-value=2.4e-10 Score=95.52 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=32.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
.++++|+|+|++||||||+++.|++.+ +..+++.|+++
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l---~~~~i~~d~~~ 42 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF---ELKHLSSGDLL 42 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS---SSEEEEHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc---CCeEEechHHH
Confidence 456789999999999999999999988 47888887765
No 131
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=99.03 E-value=5.4e-11 Score=96.66 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 50 VIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 50 iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
.|.|+||||||||||++.|.+.++
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 378999999999999999998764
No 132
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.03 E-value=2e-10 Score=96.24 Aligned_cols=33 Identities=21% Similarity=0.186 Sum_probs=23.4
Q ss_pred hhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 41 AENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 41 ~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
.+....++++|+|.|++||||||+++.|++.+.
T Consensus 18 ~~~~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 18 GPGSMARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -----CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCccccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 333456789999999999999999999999985
No 133
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.03 E-value=9.2e-10 Score=88.47 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=20.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
++++|+|+|++||||||+++.|++.++
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 567999999999999999999999884
No 134
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=99.01 E-value=3.9e-10 Score=91.00 Aligned_cols=28 Identities=11% Similarity=0.208 Sum_probs=25.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
.++.+++|+||||||||||++.|.+.++
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3567999999999999999999999874
No 135
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.00 E-value=2e-10 Score=108.01 Aligned_cols=136 Identities=16% Similarity=0.093 Sum_probs=83.4
Q ss_pred hccCCc-eeeeCCccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC--------CCEEE
Q 023701 9 MIEASS-GVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--------QRVVL 79 (278)
Q Consensus 9 ~~~~~~-~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~--------~~~~~ 79 (278)
+++..+ ++.|++..|+.++| .+.+|.+++|.|++|||||||++.|++.+.+ ..+.+
T Consensus 287 ~l~~~~l~~~~~~~~l~~~~~---------------~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~ 351 (538)
T 1yqt_A 287 LVTYPRLVKDYGSFRLEVEPG---------------EIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAY 351 (538)
T ss_dssp EEEECCEEEEETTEEEEECCE---------------EEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEE
T ss_pred EEEEeeEEEEECCEEEEeCcc---------------ccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEE
Confidence 344445 66777766777777 7899999999999999999999999998764 23567
Q ss_pred EcCCCCC-CCCCHHHHHHcc-ccCCCCCCcccHHHHHHHHHHhhcCCCccc--cccCCcCCcCCCCCccccCCCcEEEEc
Q 023701 80 VNQDSFY-HNLTEQELARVH-EYNFDHPDAFDTEKLLSSMEKLRHGQAVDI--PNYDFKSYKNNVFPARRVNPSDVILLE 155 (278)
Q Consensus 80 i~~D~~~-~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~iiiid 155 (278)
+.++... ...+..+..... ...+. +.+...+.+..+........ ..++.+..++...++..+.+++++++|
T Consensus 352 v~Q~~~~~~~~tv~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLD 426 (538)
T 1yqt_A 352 KPQYIKADYEGTVYELLSKIDASKLN-----SNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLD 426 (538)
T ss_dssp ECSSCCCCCSSBHHHHHHHHHHHHHT-----CHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred EecCCcCCCCCcHHHHHHhhhccCCC-----HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 7776433 233433322111 00000 11222233332222111111 244444455555566778899999999
Q ss_pred ccccCCchH
Q 023701 156 GILVFHDSR 164 (278)
Q Consensus 156 g~~~~~d~~ 164 (278)
+|++.+|..
T Consensus 427 EPt~~LD~~ 435 (538)
T 1yqt_A 427 EPSAYLDVE 435 (538)
T ss_dssp CTTTTCCHH
T ss_pred CCcccCCHH
Confidence 999999974
No 136
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.00 E-value=3e-09 Score=87.75 Aligned_cols=80 Identities=14% Similarity=0.157 Sum_probs=42.6
Q ss_pred hcCeEEEEecChhhhhHHhhhccccccCCCHHHHHHHHhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHHH
Q 023701 168 LMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRT 247 (278)
Q Consensus 168 ~~d~~I~l~~~~e~~l~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~i~~~i~~ 247 (278)
.+|++||+++|++++++|+.+|+... ++ .+.....|.+.+...|..+...... -=.+|+.+.+-+...+.+.+.|.+
T Consensus 124 ~PDl~i~Ld~~~e~~~~Ri~~r~~~~-dr-~e~~~~~f~~~v~~~Y~~l~~~~~~-~~~~IDa~~~~e~V~~~i~~~i~~ 200 (205)
T 4hlc_A 124 YPDLTIYLNVSAEVGRERIIKNSRDQ-NR-LDQEDLKFHEKVIEGYQEIIHNESQ-RFKSVNADQPLENVVEDTYQTIIK 200 (205)
T ss_dssp CCSEEEEEECCHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHHHSCCT-TEEEEETTSCHHHHHHHHHHHHHH
T ss_pred CCCEEeeeCCCHHHHHHHHHhcCCcc-cc-hhccCHHHHHHHHHHHHHHHHhCCC-CEEEEECCCCHHHHHHHHHHHHHH
Confidence 35999999999999999998885321 11 1111223444455555544322111 124566554333444666666666
Q ss_pred hhc
Q 023701 248 KLG 250 (278)
Q Consensus 248 ~l~ 250 (278)
.|+
T Consensus 201 ~L~ 203 (205)
T 4hlc_A 201 YLE 203 (205)
T ss_dssp HHC
T ss_pred HHh
Confidence 654
No 137
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.99 E-value=4e-10 Score=93.61 Aligned_cols=37 Identities=19% Similarity=0.384 Sum_probs=32.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
+++.|+|.|++||||||+++.|++.+ ++.+++.|+++
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l---~~~~i~~d~li 40 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY---GLAHLSTGDML 40 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH---CCEEEEHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh---CceEEehhHHH
Confidence 45789999999999999999999998 57888887655
No 138
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=98.99 E-value=4.5e-09 Score=85.87 Aligned_cols=26 Identities=35% Similarity=0.446 Sum_probs=24.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHh
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQL 72 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~l 72 (278)
++++|+|+|++||||||+++.|++.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999987
No 139
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=98.98 E-value=5.6e-10 Score=92.20 Aligned_cols=36 Identities=14% Similarity=0.269 Sum_probs=31.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 023701 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYH 87 (278)
Q Consensus 49 ~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~ 87 (278)
++|.|.||+||||+|.|+.|++.+ ++.+|+..++++
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~---g~~~istGdllR 36 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEK---GFVHISTGDILR 36 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH---CCEEEEHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH---CCeEEcHHHHHH
Confidence 478899999999999999999998 588888877663
No 140
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.97 E-value=1.6e-10 Score=96.34 Aligned_cols=37 Identities=11% Similarity=0.083 Sum_probs=25.5
Q ss_pred ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 023701 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQL 72 (278)
Q Consensus 21 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l 72 (278)
..|++||| .+.++.+++|+||||||||||++.|++.+
T Consensus 11 ~~l~~isl---------------~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 11 SSGLVPRG---------------SMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --------------------------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ccccCCce---------------ecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 46999999 99999999999999999999999999988
No 141
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=98.94 E-value=7e-10 Score=92.09 Aligned_cols=34 Identities=18% Similarity=0.385 Sum_probs=28.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEE
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVL 79 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~ 79 (278)
.++++|+|.|++||||||+++.|++.+...+..+
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v 37 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEV 37 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCc
Confidence 4688999999999999999999999987555433
No 142
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=98.93 E-value=1.4e-09 Score=91.61 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=26.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQR 76 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~ 76 (278)
.++.+|+|.|++||||||+++.|++.+...+
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~ 55 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQNG 55 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 3578999999999999999999999986433
No 143
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=98.92 E-value=3.6e-10 Score=94.50 Aligned_cols=120 Identities=11% Similarity=0.169 Sum_probs=66.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCH--HHHHHccccCCCCCCcccHHHHHHHHHHhhcC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTE--QELARVHEYNFDHPDAFDTEKLLSSMEKLRHG 123 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 123 (278)
.-.+..||.|++||||||+|+.|++.+ ++.+++.+++++.... .+......-.+........+.+.+.+......
T Consensus 6 ~~~~~~~~~G~pGsGKsT~a~~L~~~~---g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~ 82 (230)
T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIKEKF---GIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKE 82 (230)
T ss_dssp ---CEEEEECCTTSCHHHHHHHHHHHH---TCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHS
T ss_pred ccccceeeECCCCCCHHHHHHHHHHHh---CCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhC
Confidence 345679999999999999999999998 5888888776533100 00000000011111112222223333221110
Q ss_pred CCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCc-h-HHhh---hcCeEEEEecChhhhhHHhhhcc
Q 023701 124 QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD-S-RVRE---LMNMKIFVDTDADVRLARRIRRD 190 (278)
Q Consensus 124 ~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d-~-~~~~---~~d~~I~l~~~~e~~l~R~~~R~ 190 (278)
......+|+||.-.... . .+.. .+|.+|||++|.+++++|+..|.
T Consensus 83 ----------------------~~~~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~ 132 (230)
T 3gmt_A 83 ----------------------ADCANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRR 132 (230)
T ss_dssp ----------------------GGGTTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEE
T ss_pred ----------------------cccCCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCC
Confidence 00112467888422211 1 1222 36899999999999999999996
No 144
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.91 E-value=4.1e-10 Score=93.25 Aligned_cols=34 Identities=18% Similarity=0.335 Sum_probs=29.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023701 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 50 iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
.|+|+|++||||||+++.|++.+ ++.+++.|++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~---g~~~i~~d~~~ 35 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY---GIPQISTGDML 35 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---CCCEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCeEEeHHHHH
Confidence 58999999999999999999988 47777776655
No 145
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.91 E-value=4e-10 Score=115.87 Aligned_cols=117 Identities=13% Similarity=0.201 Sum_probs=72.9
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC---------------------CCEEEEcCCCCCCCCCHHHHHHccccCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD---------------------QRVVLVNQDSFYHNLTEQELARVHEYNF 102 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~---------------------~~~~~i~~D~~~~~~~~~~~~~~~~~~~ 102 (278)
.+++|.+++|+|++|||||||++.|.+.+++ ..+.++.+|.+....+..++..++..
T Consensus 1055 ~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~-- 1132 (1284)
T 3g5u_A 1055 EVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDN-- 1132 (1284)
T ss_dssp EECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCS--
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCC--
Confidence 9999999999999999999999999998765 23556666665544555554443221
Q ss_pred CCCCcccHHHHHHHHHHhhcCCCc-ccc------------ccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023701 103 DHPDAFDTEKLLSSMEKLRHGQAV-DIP------------NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 103 ~~~~~~d~~~~~~~l~~~~~~~~i-~~~------------~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
......+.+.+.++.......+ ..| .++.+..++...++..+.+++++++|+|.+.+|+.
T Consensus 1133 --~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~ 1205 (1284)
T 3g5u_A 1133 --SRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTE 1205 (1284)
T ss_dssp --SCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHH
T ss_pred --CCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 1112333344443322111000 011 23333344444556667899999999999998864
No 146
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.90 E-value=2.2e-10 Score=117.74 Aligned_cols=115 Identities=15% Similarity=0.175 Sum_probs=74.0
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC---------------------CEEEEcCCCCCCCCCHHHHHHccccCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RVVLVNQDSFYHNLTEQELARVHEYNF 102 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~---------------------~~~~i~~D~~~~~~~~~~~~~~~~~~~ 102 (278)
.+++|.+++|+|++|||||||++.|.+.+++. .+.++.++.+....+..++..++...
T Consensus 412 ~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~- 490 (1284)
T 3g5u_A 412 KVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRED- 490 (1284)
T ss_dssp EECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSS-
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCC-
Confidence 99999999999999999999999999988652 25666777666555666655543321
Q ss_pred CCCCcccHHHHHHHHH---------HhhcCCC--ccc--cccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023701 103 DHPDAFDTEKLLSSME---------KLRHGQA--VDI--PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 103 ~~~~~~d~~~~~~~l~---------~~~~~~~--i~~--~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
...+.+.+.++ .+..+-. +.. ..++.+..+|...++..+.+++++++|+|++.+|++
T Consensus 491 -----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~ 560 (1284)
T 3g5u_A 491 -----VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTE 560 (1284)
T ss_dssp -----CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHH
T ss_pred -----CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHH
Confidence 22233333332 2211111 000 123334444445556667899999999999999974
No 147
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.90 E-value=5.7e-09 Score=84.41 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=34.0
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSF 85 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~ 85 (278)
.+.++.+|+|+|++||||||+++.|++.+ ..+...++.|++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~-~~g~i~i~~d~~ 45 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLP-GVPKVHFHSDDL 45 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCS-SSCEEEECTTHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhcc-CCCeEEEcccch
Confidence 46789999999999999999999999974 345677787764
No 148
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.89 E-value=4.7e-09 Score=91.24 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=30.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCC
Q 023701 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSF 85 (278)
Q Consensus 48 ~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~ 85 (278)
+.+|.|+|++||||||+++.|++.+. ++.+++.|.+
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~--~~~~i~~D~~ 37 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNP--GFYNINRDDY 37 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHST--TEEEECHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCC--CcEEecccHH
Confidence 57899999999999999999999752 6888888743
No 149
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.89 E-value=3.3e-09 Score=84.80 Aligned_cols=35 Identities=26% Similarity=0.305 Sum_probs=29.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHH-HhCCCCEEEEcCCCC
Q 023701 48 PFVIGVAGGAASGKTTVCDMIIQ-QLHDQRVVLVNQDSF 85 (278)
Q Consensus 48 ~~iI~I~G~sGSGKTTla~~L~~-~l~~~~~~~i~~D~~ 85 (278)
+.+|+|+|++||||||+++.|++ .+ +..+++.|.+
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~---~~~~i~~d~~ 37 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNP---GFYNINRDDY 37 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHST---TEEEECHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcC---CcEEecHHHH
Confidence 57899999999999999999999 44 5888887653
No 150
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.89 E-value=5e-09 Score=99.67 Aligned_cols=131 Identities=14% Similarity=0.122 Sum_probs=83.5
Q ss_pred eeeeCC--ccccceeeecccCCCCchhhhhhCCCCC-----EEEEEEcCCCCcHHHHHHHHHHHhCCC--------CEEE
Q 023701 15 GVHFSG--FHMDGLEVRNKETGQPTISAAENLHRQP-----FVIGVAGGAASGKTTVCDMIIQQLHDQ--------RVVL 79 (278)
Q Consensus 15 ~~~~~~--~~l~~i~~~~~~~~~~~~~~~~~~~~~~-----~iI~I~G~sGSGKTTla~~L~~~l~~~--------~~~~ 79 (278)
...|++ ..+++++| .+..+ .+++|.|+||||||||++.|++.+.+. ++.+
T Consensus 353 ~~~y~~~~~~l~~vsl---------------~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~ 417 (608)
T 3j16_B 353 AFSYPSLKKTQGDFVL---------------NVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSM 417 (608)
T ss_dssp CCEECCEEEECSSCEE---------------EECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEE
T ss_pred eEEecCcccccCceEE---------------EEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEE
Confidence 566766 35889999 55555 789999999999999999999988642 3566
Q ss_pred EcCCCCC-CCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccc--cccCCcCCcCCCCCccccCCCcEEEEcc
Q 023701 80 VNQDSFY-HNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDI--PNYDFKSYKNNVFPARRVNPSDVILLEG 156 (278)
Q Consensus 80 i~~D~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~iiiidg 156 (278)
+.++... ...+..++.... . . ....+.....+.++.+........ ..++.+..+++..++..+.+++++++|+
T Consensus 418 ~~q~~~~~~~~tv~e~~~~~-~-~--~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDE 493 (608)
T 3j16_B 418 KPQKIAPKFPGTVRQLFFKK-I-R--GQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDE 493 (608)
T ss_dssp ECSSCCCCCCSBHHHHHHHH-C-S--STTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECC
T ss_pred ecccccccCCccHHHHHHHH-h-h--cccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 6665322 223333322111 0 0 111233344455665554433222 2455555566666677788999999999
Q ss_pred cccCCchH
Q 023701 157 ILVFHDSR 164 (278)
Q Consensus 157 ~~~~~d~~ 164 (278)
|++++|+.
T Consensus 494 PT~gLD~~ 501 (608)
T 3j16_B 494 PSAYLDSE 501 (608)
T ss_dssp TTTTCCHH
T ss_pred CCCCCCHH
Confidence 99999964
No 151
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.88 E-value=2.3e-09 Score=100.96 Aligned_cols=163 Identities=17% Similarity=0.318 Sum_probs=82.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG 123 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~--~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 123 (278)
+.+.+|+|+|++||||||+++.|++.+.. ..+.+++.|.+.+.+ .+.. .|....-...+..+..
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l-------~~~~------~f~~~er~~~l~~i~~- 435 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHL-------SRGL------GFSKEDRITNILRVGF- 435 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHT-------CTTC------CSSHHHHHHHHHHHHH-
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhh-------cccc------cccHHHHHHHHHHHHH-
Confidence 45789999999999999999999998742 235667665422110 0111 1221111111111110
Q ss_pred CCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCc--hHHhhh---cC-eEEEEecChhhhhHHhhhccccccCCC
Q 023701 124 QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD--SRVREL---MN-MKIFVDTDADVRLARRIRRDTVEKGRD 197 (278)
Q Consensus 124 ~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d--~~~~~~---~d-~~I~l~~~~e~~l~R~~~R~~~~~~~~ 197 (278)
+ ....+..+..+|++....+.. ...... .| .+|||+++.+++.+|.. |+.....
T Consensus 436 --~---------------~~~~l~~G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~-r~~~~~~-- 495 (546)
T 2gks_A 436 --V---------------ASEIVKHNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDV-KGLYKKA-- 495 (546)
T ss_dssp --H---------------HHHHHHTTCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHCC-SSHHHHC--
T ss_pred --H---------------HHHHHhCCCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHhh-ccccccc--
Confidence 0 001122345678886544311 122333 36 89999999999999975 3211111
Q ss_pred HHHHHHHHhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHHHhhcc
Q 023701 198 IATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQ 251 (278)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~i~~~i~~~l~~ 251 (278)
....+..+.. ....|. . ...+|++|+|++.+ +++++++|...+.+
T Consensus 496 ~~~~i~~~~~-vr~~~e---~--~~~adivIDts~~s---~eev~~~I~~~L~~ 540 (546)
T 2gks_A 496 KEGLIKGFTG-VDDPYE---P--PVAPEVRVDTTKLT---PEESALKILEFLKK 540 (546)
T ss_dssp ------CCBT-TTBCCC---C--CSSCSEEEETTTSC---HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHh-hhhccc---c--ccCCcEEEECCCCC---HHHHHHHHHHHHHH
Confidence 0111111111 111111 1 25689999987433 45555555555544
No 152
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=98.88 E-value=3.7e-09 Score=87.72 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=26.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCE
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRV 77 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~ 77 (278)
+|++|+|.|++||||||+++.|++.+...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~ 32 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGI 32 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 4789999999999999999999999864443
No 153
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.86 E-value=6.9e-09 Score=84.84 Aligned_cols=30 Identities=10% Similarity=0.236 Sum_probs=26.2
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
+..++.+|+|+||||||||||++.|.+.++
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 445788999999999999999999999864
No 154
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.86 E-value=2.6e-09 Score=105.86 Aligned_cols=133 Identities=12% Similarity=0.162 Sum_probs=86.7
Q ss_pred ccCCceeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHH-hCC------CCEEEEc
Q 023701 10 IEASSGVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQ-LHD------QRVVLVN 81 (278)
Q Consensus 10 ~~~~~~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~-l~~------~~~~~i~ 81 (278)
.....++.|++ ..|++||| .+.+|.+++|+|+||||||||++.|++- +.+ .+..++.
T Consensus 437 ~~~~ls~~yg~~~iL~~vsl---------------~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~ 501 (986)
T 2iw3_A 437 CNCEFSLAYGAKILLNKTQL---------------RLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVE 501 (986)
T ss_dssp EEEEEEEEETTEEEEEEEEE---------------EEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETT
T ss_pred EEeeEEEEECCEEeEecceE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEc
Confidence 33334889988 46999999 9999999999999999999999999951 110 1234555
Q ss_pred CC--CCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCC-Cc--cccccCCcCCcCCCCCccccCCCcEEEEcc
Q 023701 82 QD--SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ-AV--DIPNYDFKSYKNNVFPARRVNPSDVILLEG 156 (278)
Q Consensus 82 ~D--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~-~i--~~~~~~~~~~~~~~~~~~~~~~~~iiiidg 156 (278)
++ .++..++..++..+ . .. . . .+...+.++.+.... .. ....++.+..++...++..+.+++++++|+
T Consensus 502 q~~~~~~~~ltv~e~l~~-~-~~---~-~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDE 574 (986)
T 2iw3_A 502 HDIDGTHSDTSVLDFVFE-S-GV---G-T-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDE 574 (986)
T ss_dssp CCCCCCCTTSBHHHHHHT-T-CS---S-C-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEES
T ss_pred ccccccccCCcHHHHHHH-h-hc---C-H-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 43 23444554444332 1 01 1 1 345556666554321 11 122555555666666667788999999999
Q ss_pred cccCCchH
Q 023701 157 ILVFHDSR 164 (278)
Q Consensus 157 ~~~~~d~~ 164 (278)
|++.+|+.
T Consensus 575 PTs~LD~~ 582 (986)
T 2iw3_A 575 PTNHLDTV 582 (986)
T ss_dssp TTTTCCHH
T ss_pred CccCCCHH
Confidence 99999974
No 155
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=98.84 E-value=2.2e-08 Score=81.87 Aligned_cols=171 Identities=16% Similarity=0.191 Sum_probs=87.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCC---CCcc------cHHHHHH
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDH---PDAF------DTEKLLS 115 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~---~~~~------d~~~~~~ 115 (278)
-.++++|+|+|.+||||+|+|+.|.+.++..++.+++..+-.+. .........++. ...+ +...+-+
T Consensus 8 ~~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~----~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~ 83 (202)
T 3ch4_B 8 GAPRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKE----QYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGE 83 (202)
T ss_dssp CCCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHH----HHHHTTTCCCC-------CCSSHHHHHHHHHH
T ss_pred cCCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHH----HHHHHcCCCchhhcchhhhHHHHHHHHHHHHH
Confidence 45778999999999999999999999774335777766432210 011111111110 0000 1111222
Q ss_pred HHHHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHh-hhcC---eEEEEecChhhhhHHhhhccc
Q 023701 116 SMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVR-ELMN---MKIFVDTDADVRLARRIRRDT 191 (278)
Q Consensus 116 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~-~~~d---~~I~l~~~~e~~l~R~~~R~~ 191 (278)
.+... + |.+ +-+... .....+++|+++.-...+-+.. +.+. ..|.|.++.++|++|...+..
T Consensus 84 ~~R~~--d-----~~~----~~~~~~---~~~~~~~vII~dvR~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg~~~~~ 149 (202)
T 3ch4_B 84 EKRQA--D-----PGF----FCRKIV---EGISQPIWLVSDTRRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWVFTP 149 (202)
T ss_dssp HHHHH--C-----TTT----THHHHS---BTCCCSEEEECCCCSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTTCCCCT
T ss_pred HHHhc--C-----chH----HHHHHH---HhcCCCcEEEeCCCCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHhhhccc
Confidence 22221 1 111 101000 0113458999998766444433 3332 469999999999999543321
Q ss_pred cccCCCHHHHHHHHhhccccccccccccccccccEEeeCCCCcH---HHHHHHHHHHHHhh
Q 023701 192 VEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNH---VAIDLIVQHIRTKL 249 (278)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~---~~~~~i~~~i~~~l 249 (278)
+.+..+. .+ -+.+. ..+|++|.|+++.+ ..++.++..++..|
T Consensus 150 ---~~Dd~es--E~----------gL~~~-~~~D~vI~Ndgt~eel~~~v~~ll~~~~~~~ 194 (202)
T 3ch4_B 150 ---GVDDAES--EC----------GLDNF-GDFDWVIENHGVEQRLEEQLENLIEFIRSRL 194 (202)
T ss_dssp ---TTTTSHH--HH----------TTTTC-CCCSEEEEECSCHHHHHHHHHHHHHHHHTTC
T ss_pred ---ccccccc--cc----------CCCCC-CcCCEEEEeCCCHHHHHHHHHHHHHHHHHHH
Confidence 1111111 11 11222 57999999997543 22344444444433
No 156
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.83 E-value=6.2e-09 Score=88.61 Aligned_cols=35 Identities=26% Similarity=0.222 Sum_probs=31.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023701 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 49 ~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
++|+|+|++||||||+|+.|++.+ +..+++.|.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~---~~~~i~~D~~~ 36 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET---GWPVVALDRVQ 36 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH---CCCEEECCSGG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC---CCeEEeccHHh
Confidence 589999999999999999999998 47788998853
No 157
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.81 E-value=1.1e-08 Score=85.31 Aligned_cols=30 Identities=13% Similarity=0.155 Sum_probs=26.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~~ 74 (278)
.++|.+++|+||||||||||++.|.+.+++
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 467889999999999999999999998863
No 158
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.79 E-value=5.1e-08 Score=92.65 Aligned_cols=37 Identities=22% Similarity=0.222 Sum_probs=29.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCC--EEEEcCC
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQR--VVLVNQD 83 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~l~~~~--~~~i~~D 83 (278)
++.+|+|+|.+||||||+++.|++.+...+ +..++.|
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD 89 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 89 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechH
Confidence 789999999999999999999999983223 4445444
No 159
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.79 E-value=2.5e-08 Score=94.33 Aligned_cols=40 Identities=28% Similarity=0.354 Sum_probs=32.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCC---CCEEEEcCCC
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD---QRVVLVNQDS 84 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~~---~~~~~i~~D~ 84 (278)
..++.+|+|+|++||||||+|+.|++.+.. ..+.+++.|.
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred cccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 456799999999999999999999999852 2356777665
No 160
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.78 E-value=7.6e-09 Score=97.31 Aligned_cols=42 Identities=26% Similarity=0.396 Sum_probs=34.4
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCC---EEEEcCCCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQR---VVLVNQDSF 85 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~---~~~i~~D~~ 85 (278)
...++.+|+|+|+||||||||+++|++.+.+.+ +.+++.|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 456899999999999999999999999986432 556777653
No 161
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.74 E-value=2.8e-08 Score=80.35 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=30.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023701 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 48 ~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
+.+++|+|++||||||+++.|++.+. +..+++.|++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~--g~~~i~~d~~~ 38 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLD--NSAYIEGDIIN 38 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSS--SEEEEEHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccC--CeEEEcccchh
Confidence 57899999999999999999998653 55777776554
No 162
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.72 E-value=1.9e-09 Score=85.26 Aligned_cols=44 Identities=20% Similarity=0.298 Sum_probs=40.8
Q ss_pred eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 15 ~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
++.|++ .++++||| .+.++.+++|.||+|||||||++.|++.++
T Consensus 14 ~~~~g~~~~l~~vsl---------------~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 14 MLRFGKKFAEILLKL---------------HTEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp HHHHHHHHHHHHHHH---------------CCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcccc---------------ccCCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence 788887 56999999 999999999999999999999999999983
No 163
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.71 E-value=3.8e-09 Score=100.53 Aligned_cols=47 Identities=23% Similarity=0.383 Sum_probs=37.9
Q ss_pred CCceeeeCC--ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 023701 12 ASSGVHFSG--FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (278)
Q Consensus 12 ~~~~~~~~~--~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~ 74 (278)
....++|++ |.|++++. ..+|.+++|.||||||||||.+.|++.+.|
T Consensus 81 ~~~~~~Y~~~~~~l~~l~~----------------~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P 129 (608)
T 3j16_B 81 AHVTHRYSANSFKLHRLPT----------------PRPGQVLGLVGTNGIGKSTALKILAGKQKP 129 (608)
T ss_dssp TTEEEECSTTSCEEECCCC----------------CCTTSEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCeEEEECCCceeecCCCC----------------CCCCCEEEEECCCCChHHHHHHHHhcCCCC
Confidence 334677765 55666555 689999999999999999999999998864
No 164
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=98.68 E-value=9.3e-09 Score=85.76 Aligned_cols=75 Identities=15% Similarity=0.085 Sum_probs=36.4
Q ss_pred hcCeEEEEecChhhhhHHhhhccccccCCCHHHHHHHHhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHHH
Q 023701 168 LMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRT 247 (278)
Q Consensus 168 ~~d~~I~l~~~~e~~l~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~i~~~i~~ 247 (278)
.+|++|||++++++.++|+ +|+..+. ....|..++...|..+...+ ....++|+++.+.+.. +.+.+.|.+
T Consensus 145 ~PDl~I~Ldv~~e~~~~Ri-~rdr~E~------~~~e~~~rv~~~y~~la~~~-~~~~~vIDa~~sieeV-~~I~~~l~~ 215 (223)
T 3ld9_A 145 YPDITFIIDVDINESLSRS-CKNGYEF------ADMEFYYRVRDGFYDIAKKN-PHRCHVITDKSETYDI-DDINFVHLE 215 (223)
T ss_dssp CCSEEEEEECC-----------------------CHHHHHHHHHHHHHHHHHC-TTTEEEEESSCSSSCC-CHHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHh-ccCcccc------chHHHHHHHHHHHHHHHHHC-CCCEEEEcCCCCHHHH-HHHHHHHHH
Confidence 5799999999999999998 5543221 11223333444444443322 2356888887665555 777777776
Q ss_pred hhcc
Q 023701 248 KLGQ 251 (278)
Q Consensus 248 ~l~~ 251 (278)
.++.
T Consensus 216 ~lg~ 219 (223)
T 3ld9_A 216 VIKV 219 (223)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 6643
No 165
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.66 E-value=2.2e-08 Score=94.16 Aligned_cols=48 Identities=23% Similarity=0.346 Sum_probs=38.1
Q ss_pred cCCceeeeCCc--cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 023701 11 EASSGVHFSGF--HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (278)
Q Consensus 11 ~~~~~~~~~~~--~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~ 74 (278)
+...++.|++. +|++||- +.+|.+++|+|+||||||||++.|++.+.+
T Consensus 24 ~~~ls~~yg~~~~~l~~vs~----------------i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p 73 (538)
T 1yqt_A 24 EEDCVHRYGVNAFVLYRLPV----------------VKEGMVVGIVGPNGTGKSTAVKILAGQLIP 73 (538)
T ss_dssp CCCEEEECSTTCCEEECCCC----------------CCTTSEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred hcCcEEEECCccccccCcCc----------------CCCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34447788763 5666542 589999999999999999999999998754
No 166
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=98.66 E-value=5.9e-08 Score=79.43 Aligned_cols=29 Identities=28% Similarity=0.355 Sum_probs=25.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCE
Q 023701 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRV 77 (278)
Q Consensus 49 ~iI~I~G~sGSGKTTla~~L~~~l~~~~~ 77 (278)
+.|+|.|+.||||||.++.|++.|...|.
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~ 29 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGK 29 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 36899999999999999999999864444
No 167
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=98.65 E-value=1.3e-07 Score=80.69 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=28.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEc
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVN 81 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~ 81 (278)
..++++|+|.|++||||||+++.|++.+. +..++.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~--~~~~i~ 55 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCE--DWEVVP 55 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCT--TEEEEC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcC--CCEEEe
Confidence 46789999999999999999999999984 355554
No 168
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.64 E-value=1.8e-08 Score=95.98 Aligned_cols=135 Identities=16% Similarity=0.193 Sum_probs=73.0
Q ss_pred ceeeeCC--ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-CEEEEcCCC---CCC
Q 023701 14 SGVHFSG--FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDS---FYH 87 (278)
Q Consensus 14 ~~~~~~~--~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~-~~~~i~~D~---~~~ 87 (278)
.+++|++ ++|++|+- +.+|.+++|.|+||||||||++.|++.+.+. |......+. .+.
T Consensus 97 ls~~yg~~~~~l~~vs~----------------i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~ 160 (607)
T 3bk7_A 97 CVHRYGVNAFVLYRLPI----------------VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFR 160 (607)
T ss_dssp EEEECSTTCCEEECCCC----------------CCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTT
T ss_pred eEEEECCCCeeeCCCCC----------------CCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeC
Confidence 3677765 24666543 6899999999999999999999999987542 210000000 011
Q ss_pred CCCHHHH----HH--cc-ccCCCC----CCcc------------cHHHHHHHHHHhhcCCCccc--cccCCcCCcCCCCC
Q 023701 88 NLTEQEL----AR--VH-EYNFDH----PDAF------------DTEKLLSSMEKLRHGQAVDI--PNYDFKSYKNNVFP 142 (278)
Q Consensus 88 ~~~~~~~----~~--~~-~~~~~~----~~~~------------d~~~~~~~l~~~~~~~~i~~--~~~~~~~~~~~~~~ 142 (278)
....... .. .. .+.++. +..+ ..+...+.++.+........ ..++.+..++...+
T Consensus 161 G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIA 240 (607)
T 3bk7_A 161 GNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIA 240 (607)
T ss_dssp TSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHH
T ss_pred CEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHH
Confidence 1111100 00 00 000110 0000 00123344444443322222 24455555666666
Q ss_pred ccccCCCcEEEEcccccCCchH
Q 023701 143 ARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 143 ~~~~~~~~iiiidg~~~~~d~~ 164 (278)
+..+.+++++++|+|++.+|+.
T Consensus 241 raL~~~P~lLlLDEPTs~LD~~ 262 (607)
T 3bk7_A 241 AALLRKAHFYFFDEPSSYLDIR 262 (607)
T ss_dssp HHHHSCCSEEEEECTTTTCCHH
T ss_pred HHHhcCCCEEEEECCcccCCHH
Confidence 6778899999999999999974
No 169
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.64 E-value=5.4e-08 Score=88.72 Aligned_cols=39 Identities=28% Similarity=0.344 Sum_probs=34.0
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSF 85 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~ 85 (278)
....+.+|.|+|++||||||+++.|++.+ ++.+++.|.+
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~---~~~~i~~D~~ 292 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSA---GYVHVNRDTL 292 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGGG---TCEECCGGGS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHhc---CcEEEccchH
Confidence 45677899999999999999999999987 5888888875
No 170
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.62 E-value=4.2e-08 Score=80.27 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=23.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
+++.+++|+||||||||||++.|.+.++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 3567899999999999999999999874
No 171
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=98.62 E-value=1.7e-07 Score=78.83 Aligned_cols=79 Identities=11% Similarity=0.177 Sum_probs=47.9
Q ss_pred hcCeEEEEecChhhhhHHhhhccccccCCCHHHHHHHHhhcccccccccccc---------ccccccEEeeCCCC---cH
Q 023701 168 LMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILP---------TKKYADIIIPRGGD---NH 235 (278)
Q Consensus 168 ~~d~~I~l~~~~e~~l~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---------~~~~aD~iI~n~~~---~~ 235 (278)
.+|++|||+++.+++++|+.+|+......... .|...+...|..++.+ +.....++|+.+.+ ..
T Consensus 149 ~pd~~i~l~~~~~~~~~R~~~R~r~~e~~~~~----~~~~~v~~~y~~~~~~~~~p~~~~~~~~~~~~~Id~~~~~~~v~ 224 (241)
T 2ocp_A 149 TLHGFIYLQASPQVCLKRLYQRAREEEKGIEL----AYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSEEV 224 (241)
T ss_dssp CCCEEEEEECCHHHHHHHHHHSCCTTTTTCCH----HHHHHHHHHHHHHHTSCCSCCCCTTGGGCCEEEEECCSCTTTCH
T ss_pred CCCEEEEEECCHHHHHHHHHhcCCcccccCCH----HHHHHHHHHHHHHHhhccccccccccCCCCEEEEECCCChhhCH
Confidence 57999999999999999998886322111011 2233344445554432 22334567776653 23
Q ss_pred HHHHHHHHHHHHhhc
Q 023701 236 VAIDLIVQHIRTKLG 250 (278)
Q Consensus 236 ~~~~~i~~~i~~~l~ 250 (278)
..+..+++.|.+.++
T Consensus 225 ~~i~~i~~~i~~~l~ 239 (241)
T 2ocp_A 225 TKQEDLMREVNTFVK 239 (241)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 467888888876654
No 172
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.60 E-value=3.1e-08 Score=83.63 Aligned_cols=27 Identities=33% Similarity=0.464 Sum_probs=24.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
++.+|+|+|++||||||+++.|++.++
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 468999999999999999999998873
No 173
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.58 E-value=1.6e-07 Score=82.63 Aligned_cols=42 Identities=19% Similarity=0.420 Sum_probs=35.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCC--CCCCC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSF--YHNLT 90 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~--~~~~~ 90 (278)
.++.+|+|+||+|||||||+..|++.+ +..+|+.|.+ |+.+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l---~~eiIs~Ds~qvYr~md 81 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHF---PLEVINSDKMQVYKGLD 81 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTS---CEEEEECCSSTTBSSCT
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHC---CCcEEccccccccccee
Confidence 456799999999999999999999998 4789999975 45443
No 174
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.55 E-value=1.6e-07 Score=79.74 Aligned_cols=43 Identities=28% Similarity=0.528 Sum_probs=35.7
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYH 87 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~ 87 (278)
...++.+|+|+|++||||||+++.|++.++ .+..+++.|.+-.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-~~~~~~~~D~~r~ 70 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-GNIVIIDGDSFRS 70 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-TCCEEECGGGGGT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-CCcEEEecHHHHH
Confidence 356789999999999999999999999985 2467788887643
No 175
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.52 E-value=1.3e-08 Score=88.87 Aligned_cols=48 Identities=17% Similarity=0.121 Sum_probs=39.1
Q ss_pred eeeeCCccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEE
Q 023701 15 GVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVL 79 (278)
Q Consensus 15 ~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~ 79 (278)
.+.|+..+|++|+| .++++.+++|+||+|||||||++.|++.+ .|..+
T Consensus 108 s~~y~~~vL~~vsl---------------~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~--~G~I~ 155 (305)
T 2v9p_A 108 ELITFINALKLWLK---------------GIPKKNCLAFIGPPNTGKSMLCNSLIHFL--GGSVL 155 (305)
T ss_dssp CHHHHHHHHHHHHH---------------TCTTCSEEEEECSSSSSHHHHHHHHHHHH--TCEEE
T ss_pred EEEcChhhhccceE---------------EecCCCEEEEECCCCCcHHHHHHHHhhhc--CceEE
Confidence 45554335777777 99999999999999999999999999998 35443
No 176
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=98.50 E-value=4.9e-08 Score=82.28 Aligned_cols=31 Identities=29% Similarity=0.328 Sum_probs=26.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcC
Q 023701 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ 82 (278)
Q Consensus 49 ~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~ 82 (278)
++|+|+|++||||||+++.|++.+ |+.++..
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~---g~~~~~~ 32 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNY---SAVKYQL 32 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---CEEECCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc---CCeEEec
Confidence 689999999999999999999976 5666554
No 177
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.46 E-value=5.6e-08 Score=91.32 Aligned_cols=44 Identities=25% Similarity=0.402 Sum_probs=37.3
Q ss_pred eeeeCC--ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 023701 15 GVHFSG--FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (278)
Q Consensus 15 ~~~~~~--~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~ 74 (278)
.-+||. |.|-++.+ ..+|.+++|.||||||||||.+.|++.+.|
T Consensus 6 ~~~~~~~~f~l~~l~~----------------~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p 51 (538)
T 3ozx_A 6 IHRYKVNGFKLFGLPT----------------PKNNTILGVLGKNGVGKTTVLKILAGEIIP 51 (538)
T ss_dssp EEESSTTSCEEECCCC----------------CCTTEEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred ceecCCCceeecCCCC----------------CCCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 345555 88877777 789999999999999999999999998764
No 178
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=98.45 E-value=7.4e-07 Score=73.86 Aligned_cols=29 Identities=28% Similarity=0.484 Sum_probs=26.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~ 74 (278)
.++++|+|.|++||||||+++.|++.+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46889999999999999999999999964
No 179
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.41 E-value=1.6e-07 Score=74.86 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=24.0
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHH
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMII 69 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~ 69 (278)
.+.+|.+++|+|+|||||||+++.+.
T Consensus 5 ~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 5 TIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 88999999999999999999999643
No 180
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.38 E-value=2.4e-07 Score=89.43 Aligned_cols=30 Identities=17% Similarity=0.329 Sum_probs=28.6
Q ss_pred ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHH
Q 023701 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVC 65 (278)
Q Consensus 21 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla 65 (278)
.+|+|||| .+.++.+++|+||||||||||+
T Consensus 32 ~~L~~vsl---------------~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 32 HNLKNIDV---------------EIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp TTCCSEEE---------------EEETTSEEEEECSTTSSHHHHH
T ss_pred cceeccEE---------------EECCCCEEEEECCCCCCHHHHh
Confidence 46999999 9999999999999999999997
No 181
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.36 E-value=9.6e-08 Score=86.81 Aligned_cols=49 Identities=20% Similarity=0.245 Sum_probs=39.9
Q ss_pred hccCCceeeeCCccccceeeecccCCCCchhhhhhCCCCCEE--EEEEcCCCCcHHHHHHHHHHHh
Q 023701 9 MIEASSGVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFV--IGVAGGAASGKTTVCDMIIQQL 72 (278)
Q Consensus 9 ~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~i--I~I~G~sGSGKTTla~~L~~~l 72 (278)
.++...++.|++..|++|+| .+.+|.+ ++|+|+||||||||.+.|++..
T Consensus 16 ~l~~~~~~~y~~~~L~~vsl---------------~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 16 TVPLAGHVGFDSLPDQLVNK---------------SVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp -CCCCCCC-CC--CHHHHHH---------------SCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred eEEEeeEEEECCeecCCCce---------------EecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 36666789998855999999 9999999 9999999999999999999863
No 182
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.29 E-value=6.5e-07 Score=86.41 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=30.8
Q ss_pred ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHH
Q 023701 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMII 69 (278)
Q Consensus 21 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~ 69 (278)
.+|+|||| .+.++.+++|+||||||||||++.|.
T Consensus 336 ~~L~~vsl---------------~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 336 HNLKNVSV---------------KIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TTCCSEEE---------------EEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ccccccee---------------EecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 35999999 99999999999999999999997653
No 183
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.28 E-value=1.1e-07 Score=94.33 Aligned_cols=51 Identities=16% Similarity=0.345 Sum_probs=44.4
Q ss_pred hccCCc-eeeeCC---ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 023701 9 MIEASS-GVHFSG---FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (278)
Q Consensus 9 ~~~~~~-~~~~~~---~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~ 74 (278)
||+.++ ++.|++ ..|++||| .+..|.+++|.|+||||||||++.|++.+.+
T Consensus 671 mL~v~nLs~~Y~g~~~~iL~dVSl---------------~I~~GeivaIiGpNGSGKSTLLklLaGll~P 725 (986)
T 2iw3_A 671 IVKVTNMEFQYPGTSKPQITDINF---------------QCSLSSRIAVIGPNGAGKSTLINVLTGELLP 725 (986)
T ss_dssp EEEEEEEEECCTTCSSCSEEEEEE---------------EEETTCEEEECSCCCHHHHHHHHHHTTSSCC
T ss_pred eEEEEeeEEEeCCCCceeeeccEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 466666 788865 46999999 9999999999999999999999999998865
No 184
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.27 E-value=3.9e-07 Score=74.79 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=25.9
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
++.++.+++|.||||||||||+++|++.++
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 678999999999999999999999999874
No 185
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.25 E-value=2.5e-07 Score=81.91 Aligned_cols=60 Identities=18% Similarity=0.248 Sum_probs=49.1
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEcCC
Q 023701 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQD 83 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~--~~~~~i~~D 83 (278)
||+..+ .+.|++ ..|+++++ ...++.+++|+|++|||||||.+.|.+.+.+ ..+.++..|
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i~~---------------~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d 92 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAVLP---------------QTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD 92 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGG---------------GCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHeeCCcccccChHHHHHhCCc---------------ccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEc
Confidence 577777 888877 46999999 8999999999999999999999999998753 234555444
No 186
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.20 E-value=2.3e-06 Score=78.99 Aligned_cols=42 Identities=33% Similarity=0.527 Sum_probs=33.9
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-CEEEE-cCCCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLV-NQDSF 85 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~-~~~~i-~~D~~ 85 (278)
...++.+|+|+|++||||||+++.|++.+.+. +-..+ ..|.+
T Consensus 289 ~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~ 332 (503)
T 2yhs_A 289 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTF 332 (503)
T ss_dssp CSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTT
T ss_pred eccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCccc
Confidence 88999999999999999999999999988542 33444 45543
No 187
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.20 E-value=1.2e-06 Score=76.24 Aligned_cols=43 Identities=28% Similarity=0.407 Sum_probs=34.2
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-CEEEEcCCCCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFY 86 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~-~~~~i~~D~~~ 86 (278)
...+|.+++|+|++||||||+++.|++.+.+. +-..+...+.+
T Consensus 96 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~ 139 (302)
T 3b9q_A 96 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 139 (302)
T ss_dssp CSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCS
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 78899999999999999999999999998642 33444444444
No 188
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.19 E-value=7.1e-07 Score=79.29 Aligned_cols=50 Identities=26% Similarity=0.321 Sum_probs=43.6
Q ss_pred hccCCc-eeeeC-C-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 023701 9 MIEASS-GVHFS-G-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (278)
Q Consensus 9 ~~~~~~-~~~~~-~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~ 74 (278)
+++..+ ++.|+ + .+++++ | ++.+|.+++|.|++|||||||.+.|++...+
T Consensus 45 ~i~~~~l~~~~~tg~~ald~l-l---------------~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 45 PLLRQVIDQPFILGVRAIDGL-L---------------TCGIGQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp STTCCCCCSEECCSCHHHHHH-S---------------CEETTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CeeecccceecCCCCEEEEee-e---------------eecCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 456666 78887 5 469999 9 9999999999999999999999999999865
No 189
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.17 E-value=8.9e-07 Score=75.57 Aligned_cols=40 Identities=28% Similarity=0.386 Sum_probs=32.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEcCCC
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDS 84 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~~--~~~~~i~~D~ 84 (278)
..++.+++|+||+||||||+++.|++.+++ .+-..+..++
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~ 63 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP 63 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc
Confidence 478999999999999999999999998864 3555555543
No 190
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.17 E-value=8.3e-07 Score=76.79 Aligned_cols=43 Identities=23% Similarity=0.449 Sum_probs=35.5
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYH 87 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~ 87 (278)
...++.+|.|+|+|||||||+++.|++.++ .+..+++.|.+..
T Consensus 29 ~~~~~~livl~G~sGsGKSTla~~L~~~~~-~~~~~Is~D~~R~ 71 (287)
T 1gvn_B 29 AVESPTAFLLGGQPGSGKTSLRSAIFEETQ-GNVIVIDNDTFKQ 71 (287)
T ss_dssp CCSSCEEEEEECCTTSCTHHHHHHHHHHTT-TCCEEECTHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCeEEEechHhHH
Confidence 345689999999999999999999999874 3578888876653
No 191
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.16 E-value=1.1e-06 Score=80.44 Aligned_cols=50 Identities=14% Similarity=0.258 Sum_probs=41.8
Q ss_pred hccCCc-eeeeC-C-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 023701 9 MIEASS-GVHFS-G-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (278)
Q Consensus 9 ~~~~~~-~~~~~-~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~ 74 (278)
+++-.+ ++.|+ + .+|+++ | ++.+|.+++|.|+||||||||++.|++...+
T Consensus 131 ~l~~~~v~~~~~tg~~vld~v-l---------------~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 131 PLQRTPIEHVLDTGVRAINAL-L---------------TVGRGQRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp TTTSCCCCSBCCCSCHHHHHH-S---------------CCBTTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred ceEEeccceecCCCceEEeee-E---------------EecCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 455555 67776 4 458888 8 9999999999999999999999999999864
No 192
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.16 E-value=1.2e-06 Score=80.93 Aligned_cols=44 Identities=16% Similarity=0.198 Sum_probs=37.6
Q ss_pred eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 023701 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (278)
Q Consensus 15 ~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~ 74 (278)
.+.+.. .+|++|+| .+.+ .+++|.||||||||||+++|++.+.+
T Consensus 11 ~l~~~~~~~l~~vsl---------------~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p 55 (483)
T 3euj_A 11 SLTLINWNGFFARTF---------------DFDE-LVTTLSGGNGAGKSTTMAGFVTALIP 55 (483)
T ss_dssp EEEEEEETTEEEEEE---------------ECCS-SEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEEeccccccceEE---------------EEcc-ceEEEECCCCCcHHHHHHHHhcCCCC
Confidence 344444 35999999 8999 99999999999999999999999864
No 193
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=98.13 E-value=2.1e-06 Score=74.73 Aligned_cols=41 Identities=24% Similarity=0.458 Sum_probs=35.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCC--CCCCC
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSF--YHNLT 90 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~--~~~~~ 90 (278)
++.+|+|+||+|||||||+..|++.+ +..+|+.|.+ |+.++
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~---~~~iis~Ds~QvYr~~~ 44 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRL---NGEVISGDSMQVYRGMD 44 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTT---TEEEEECCGGGGBTTCC
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhC---ccceeecCcccceeeee
Confidence 35689999999999999999999998 4789999976 76654
No 194
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.12 E-value=8.3e-07 Score=72.42 Aligned_cols=47 Identities=13% Similarity=0.177 Sum_probs=34.1
Q ss_pred hccCCc-eeeeCCccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 023701 9 MIEASS-GVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQL 72 (278)
Q Consensus 9 ~~~~~~-~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l 72 (278)
||+..+ ++.|+...+++ | +..++..|+|+|++|||||||.+.|.+..
T Consensus 3 ~l~~~~~~~~~~~~~l~~--~---------------~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 3 NLNYQQTHFVMSAPDIRH--L---------------PSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp --------CEEEESSGGG--S---------------SCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred chhhhhhhheeecCCHhH--C---------------CCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 566666 78887666777 6 77899999999999999999999998743
No 195
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.11 E-value=2.3e-06 Score=76.23 Aligned_cols=43 Identities=28% Similarity=0.386 Sum_probs=34.1
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFY 86 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~-~~~~~i~~D~~~ 86 (278)
...+|.+|+|+|++||||||+++.|++.+.+ .+-..+..-+.+
T Consensus 153 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~ 196 (359)
T 2og2_A 153 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 196 (359)
T ss_dssp CSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCS
T ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEeccccc
Confidence 7889999999999999999999999999864 233444444444
No 196
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.11 E-value=2.6e-06 Score=74.60 Aligned_cols=36 Identities=31% Similarity=0.346 Sum_probs=32.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCC
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSF 85 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~ 85 (278)
++.+|+|+||+|||||||++.|++.+ +..+++.|.+
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l---~~~iis~Ds~ 39 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADAL---PCELISVDSA 39 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS---CEEEEEECTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc---CCcEEeccch
Confidence 45689999999999999999999998 4889999875
No 197
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.11 E-value=1.4e-06 Score=75.40 Aligned_cols=54 Identities=24% Similarity=0.197 Sum_probs=43.9
Q ss_pred eeee-CCccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-C--EEEEcCC
Q 023701 15 GVHF-SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--VVLVNQD 83 (278)
Q Consensus 15 ~~~~-~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~-~--~~~i~~D 83 (278)
++.. |-..|+++++ .+.++.+++|+|++|||||||++.|+..+.+. | +.+++.+
T Consensus 16 ~i~t~g~~~Ld~i~~---------------~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 16 GLLFSGCTGINDKTL---------------GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE 73 (296)
T ss_dssp CBCCCSCTTHHHHHC---------------SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred CcccCCHHHHHHHhc---------------CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 5555 4346999999 99999999999999999999999999987533 3 5666654
No 198
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.07 E-value=3.6e-06 Score=70.47 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=32.4
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHH--HH-hCCCCEEEEcCCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMII--QQ-LHDQRVVLVNQDS 84 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~--~~-l~~~~~~~i~~D~ 84 (278)
.+.++.+++|.||+|||||||++.|+ .. ..+.+..++..+.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 45889999999999999999999999 54 3345566666553
No 199
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=98.06 E-value=4.8e-06 Score=72.33 Aligned_cols=43 Identities=33% Similarity=0.403 Sum_probs=36.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCC--CCCCCC
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDS--FYHNLT 90 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~--~~~~~~ 90 (278)
...+.+|+|+||+|||||||+..|++.+ +..+++.|. +|+.++
T Consensus 7 ~~~~~~i~i~GptgsGKt~la~~La~~~---~~~iis~Ds~qvY~~~~ 51 (316)
T 3foz_A 7 ASLPKAIFLMGPTASGKTALAIELRKIL---PVELISVDSALIYKGMD 51 (316)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHS---CEEEEECCTTTTBTTCC
T ss_pred CCCCcEEEEECCCccCHHHHHHHHHHhC---CCcEEeccccccccccc
Confidence 4567899999999999999999999998 478899986 466554
No 200
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=98.05 E-value=4.6e-06 Score=75.03 Aligned_cols=40 Identities=28% Similarity=0.445 Sum_probs=35.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCC--CCCCCC
Q 023701 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDS--FYHNLT 90 (278)
Q Consensus 48 ~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~--~~~~~~ 90 (278)
..+|+|+||+|||||||+..|++.++ ..+++.|. +|+.++
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~---~~iis~Ds~QvYr~l~ 43 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN---GEVINSDSMQVYKDIP 43 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT---EEEEECCTTTTBSSCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC---CeEeecCccceecccc
Confidence 46899999999999999999999984 67899997 777765
No 201
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.05 E-value=2.1e-06 Score=80.54 Aligned_cols=70 Identities=19% Similarity=0.084 Sum_probs=44.8
Q ss_pred CCccchhhh---ccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHH--HHHHhC
Q 023701 1 MDSKTVVDM---IEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDM--IIQQLH 73 (278)
Q Consensus 1 ~~~~~~~~~---~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~--L~~~l~ 73 (278)
|++..|..| ++... .+.+++ ..|++|++ | .+.++.+++|+|+||||||||++. +++.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~Ld~i~~-----G---------~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 1 MTSAEMTSPNNNSEHQAIAKMRTMIEGFDDISH-----G---------GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp -------------CCSSCCEECCCCTTHHHHTT-----S---------SEETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred CcchhccCCCCCccccccccccCCchhHHHhcC-----C---------CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 344444443 44444 333444 46998888 1 468899999999999999999999 678775
Q ss_pred -CCCEEEEcCCC
Q 023701 74 -DQRVVLVNQDS 84 (278)
Q Consensus 74 -~~~~~~i~~D~ 84 (278)
..+..+++..+
T Consensus 67 ~~~g~i~v~g~~ 78 (525)
T 1tf7_A 67 FDEPGVFVTFEE 78 (525)
T ss_dssp HCCCEEEEESSS
T ss_pred CCCCEEEEEEeC
Confidence 46777777654
No 202
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.03 E-value=3.3e-06 Score=72.46 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=38.6
Q ss_pred cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023701 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 22 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
.++++++ ..+++ ++|.||+|||||||+++|++.+.+ +...++..++.
T Consensus 35 ~l~~~~l---------------~~~~G--vlL~Gp~GtGKTtLakala~~~~~-~~i~i~g~~l~ 81 (274)
T 2x8a_A 35 QFKALGL---------------VTPAG--VLLAGPPGCGKTLLAKAVANESGL-NFISVKGPELL 81 (274)
T ss_dssp HHHHTTC---------------CCCSE--EEEESSTTSCHHHHHHHHHHHTTC-EEEEEETTTTC
T ss_pred HHHHcCC---------------CCCCe--EEEECCCCCcHHHHHHHHHHHcCC-CEEEEEcHHHH
Confidence 4778888 77777 999999999999999999999864 56667766554
No 203
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.01 E-value=2.9e-06 Score=68.08 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=22.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 49 FVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 49 ~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
+.++|+||+|||||||++.|++.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999999874
No 204
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.99 E-value=4.9e-07 Score=83.30 Aligned_cols=39 Identities=15% Similarity=0.232 Sum_probs=32.4
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CC-E-EEEcC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QR-V-VLVNQ 82 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~-~~-~-~~i~~ 82 (278)
.+.+|.+++|.|++|||||||+|.|++.+.+ .| . .+++.
T Consensus 134 ~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg 175 (460)
T 2npi_A 134 SNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL 175 (460)
T ss_dssp HSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC
Confidence 7889999999999999999999999998743 24 3 55554
No 205
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.97 E-value=8.6e-06 Score=71.49 Aligned_cols=42 Identities=19% Similarity=0.297 Sum_probs=35.7
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEcCCCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSF 85 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~--~~~~~i~~D~~ 85 (278)
...++.+|+|+|++||||||++..|+..+.+ ..+.+++.|.+
T Consensus 101 ~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 101 KENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp CTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 7889999999999999999999999998753 45677777753
No 206
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.97 E-value=8.9e-06 Score=64.90 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=26.5
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
...++ +.+|+|++|||||||+++|...+.
T Consensus 23 ~~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 23 PFSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp ECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred ecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 77777 899999999999999999999874
No 207
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.95 E-value=5.5e-06 Score=64.44 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=32.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCC--EEEEcCCCCC
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQR--VVLVNQDSFY 86 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~l~~~~--~~~i~~D~~~ 86 (278)
++..++|.|++|||||||++++++.+.+.+ ..+++..++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~ 76 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMP 76 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhh
Confidence 778999999999999999999999886555 6666665543
No 208
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.95 E-value=2e-05 Score=68.60 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=31.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-CEEEEcCCCCC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFY 86 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~~-~~~~i~~D~~~ 86 (278)
.++.+|+|+||+||||||+++.|++.+.+. +-..+...+.+
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~ 141 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTF 141 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCS
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCC
Confidence 368899999999999999999999998653 33444443444
No 209
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.93 E-value=6.8e-07 Score=81.10 Aligned_cols=60 Identities=15% Similarity=0.176 Sum_probs=38.8
Q ss_pred eeeeCCccccceeeecccCCCCchhhhhh-----CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 023701 15 GVHFSGFHMDGLEVRNKETGQPTISAAEN-----LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (278)
Q Consensus 15 ~~~~~~~~l~~i~~~~~~~~~~~~~~~~~-----~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~ 74 (278)
.+.|+..+|++|++.+.+-+.|.+...-. ....+.+++|.|++|||||||.+.|.+.+.+
T Consensus 31 ~k~~~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p 95 (413)
T 1tq4_A 31 RKIISQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNE 95 (413)
T ss_dssp GCSSCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTT
T ss_pred cccCCHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCc
Confidence 45666678999999333222121111100 1123349999999999999999999997643
No 210
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=97.93 E-value=2e-05 Score=68.09 Aligned_cols=37 Identities=14% Similarity=0.162 Sum_probs=33.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ 82 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~ 82 (278)
+.+.+|.+-|.-||||||.++.|.+.+++.++.++..
T Consensus 84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~ 120 (304)
T 3czq_A 84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVAL 120 (304)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEEC
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEe
Confidence 5689999999999999999999999999998877654
No 211
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.92 E-value=5.3e-06 Score=74.07 Aligned_cols=31 Identities=19% Similarity=0.402 Sum_probs=28.1
Q ss_pred CCCC--CEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 023701 44 LHRQ--PFVIGVAGGAASGKTTVCDMIIQQLHD 74 (278)
Q Consensus 44 ~~~~--~~iI~I~G~sGSGKTTla~~L~~~l~~ 74 (278)
.+.+ +..++|+|+||||||||++.|++.+.+
T Consensus 164 ~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 164 EARPFFAKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp TTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred HHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5667 899999999999999999999999864
No 212
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.92 E-value=1.5e-05 Score=70.25 Aligned_cols=41 Identities=32% Similarity=0.450 Sum_probs=32.3
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC--CEEEEcCCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDS 84 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~--~~~~i~~D~ 84 (278)
...+|.+|+|+|++||||||+++.|++.+.+. .+.+...|.
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~ 167 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDT 167 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecc
Confidence 34789999999999999999999999988643 244444454
No 213
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.92 E-value=9.9e-07 Score=78.83 Aligned_cols=38 Identities=34% Similarity=0.434 Sum_probs=32.8
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEc
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVN 81 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~-~~~~~i~ 81 (278)
.+.++.+++|+|++||||||+++.|.+.+++ .+...++
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie 209 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE 209 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred HHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence 7788999999999999999999999999875 4555555
No 214
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.91 E-value=3.8e-06 Score=75.31 Aligned_cols=30 Identities=20% Similarity=0.102 Sum_probs=28.6
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
.++++.+++|.||+||||||+++.|++.+.
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 889999999999999999999999999875
No 215
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.86 E-value=9.2e-07 Score=78.07 Aligned_cols=39 Identities=26% Similarity=0.324 Sum_probs=32.9
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQ 82 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~-~~~~~i~~ 82 (278)
.+.++.+++|+|++||||||+++.|++.+++ .+...++.
T Consensus 167 ~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~ 206 (330)
T 2pt7_A 167 GIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIED 206 (330)
T ss_dssp HHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEES
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECC
Confidence 6778899999999999999999999999865 35555554
No 216
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.86 E-value=6.9e-06 Score=67.83 Aligned_cols=41 Identities=17% Similarity=0.219 Sum_probs=32.4
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC--------CCEEEEcCCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--------QRVVLVNQDS 84 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~--------~~~~~i~~D~ 84 (278)
.+.++.+++|+||||||||||++.|+..+.+ .+..+++.+.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 4678999999999999999999999996532 2256666654
No 217
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.85 E-value=4.7e-06 Score=66.45 Aligned_cols=28 Identities=25% Similarity=0.547 Sum_probs=24.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCC
Q 023701 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQ 75 (278)
Q Consensus 48 ~~iI~I~G~sGSGKTTla~~L~~~l~~~ 75 (278)
+.+++|+|+||||||||++.|.+.+.+.
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 3589999999999999999999998754
No 218
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.85 E-value=5.7e-06 Score=66.06 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=25.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
..++..++|.||+||||||+++++++.+.
T Consensus 35 ~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 35 PEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp GGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35678999999999999999999999873
No 219
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.83 E-value=3.4e-06 Score=69.03 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=24.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCE
Q 023701 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRV 77 (278)
Q Consensus 49 ~iI~I~G~sGSGKTTla~~L~~~l~~~~~ 77 (278)
++|+|.|++||||||+++.|++.+...+.
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~~g~ 29 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGR 29 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCC
Confidence 37999999999999999999999864333
No 220
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.83 E-value=4.5e-06 Score=75.63 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=38.0
Q ss_pred eeeeCCcc-ccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 15 GVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 15 ~~~~~~~~-l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
...+.+|. +++++| ...++ +++|+|++|||||||.++|...+.
T Consensus 42 ~L~i~nf~~l~~v~l---------------~~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 42 RLEIRNLATITQLEL---------------ELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EEEEEEETTEEEEEE---------------ECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred eehhccccceeeEEE---------------ecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 45667764 999999 99999 999999999999999999988775
No 221
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.83 E-value=1.9e-05 Score=68.88 Aligned_cols=42 Identities=40% Similarity=0.634 Sum_probs=34.5
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEcCCCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSF 85 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~--~~~~~i~~D~~ 85 (278)
...++.+|+|+|++||||||++..|+..+.+ ..+.+++.|.+
T Consensus 100 ~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~ 143 (306)
T 1vma_A 100 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF 143 (306)
T ss_dssp CSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred cCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence 4578899999999999999999999998853 34677777753
No 222
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.83 E-value=6e-06 Score=67.95 Aligned_cols=27 Identities=26% Similarity=0.122 Sum_probs=24.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
.++.+++|.||+|||||||++.|++. .
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~ 46 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-A 46 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-H
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-C
Confidence 45789999999999999999999998 5
No 223
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.82 E-value=1.2e-05 Score=67.90 Aligned_cols=36 Identities=11% Similarity=0.143 Sum_probs=29.6
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ 82 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~ 82 (278)
..+++ ++|.||+||||||++++|++.+. .+...++.
T Consensus 47 ~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-~~~i~~~~ 82 (254)
T 1ixz_A 47 RIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASG 82 (254)
T ss_dssp CCCSE--EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEH
T ss_pred CCCCe--EEEECCCCCCHHHHHHHHHHHhC-CCEEEeeH
Confidence 66777 89999999999999999999875 44555554
No 224
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.81 E-value=2.1e-06 Score=75.77 Aligned_cols=70 Identities=19% Similarity=0.154 Sum_probs=44.2
Q ss_pred hhhhccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCC
Q 023701 6 VVDMIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQD 83 (278)
Q Consensus 6 ~~~~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D 83 (278)
+++++...+ +..||+ ..++++++.+. ........+..++|.||+|+||||+++.|++.++. .+...+..
T Consensus 15 ~~~~lr~~~l~~~~g~~~~~~~l~~~i~--------~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~-~~~~~sg~ 85 (334)
T 1in4_A 15 GVQFLRPKSLDEFIGQENVKKKLSLALE--------AAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT-NIHVTSGP 85 (334)
T ss_dssp --CTTSCSSGGGCCSCHHHHHHHHHHHH--------HHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC-CEEEEETT
T ss_pred HHHHcCCccHHHccCcHHHHHHHHHHHH--------HHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-CEEEEech
Confidence 345666666 777777 45788877111 11111223367899999999999999999999842 23444444
Q ss_pred C
Q 023701 84 S 84 (278)
Q Consensus 84 ~ 84 (278)
.
T Consensus 86 ~ 86 (334)
T 1in4_A 86 V 86 (334)
T ss_dssp T
T ss_pred H
Confidence 3
No 225
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.80 E-value=1.5e-05 Score=74.05 Aligned_cols=40 Identities=8% Similarity=0.194 Sum_probs=33.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCC----CCEEEEcCCC
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD----QRVVLVNQDS 84 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~~----~~~~~i~~D~ 84 (278)
.+++.+|+|+|.+||||||++++|++.|.. ..+.+++.|.
T Consensus 392 ~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 392 PKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp GGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred cccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 357799999999999999999999999963 2256777775
No 226
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.80 E-value=1.7e-05 Score=65.01 Aligned_cols=40 Identities=28% Similarity=0.233 Sum_probs=33.5
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDS 84 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~ 84 (278)
.+.++.+++|.|++||||||+++.|+. ....++.+++.+.
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL-LSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH-HHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH-HcCCcEEEEECCC
Confidence 468899999999999999999999998 4445677787765
No 227
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.79 E-value=9.9e-06 Score=65.62 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=23.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 48 PFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 48 ~~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
+.+++|+|++||||||+++.|++.+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc
Confidence 35799999999999999999999874
No 228
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.77 E-value=1.6e-05 Score=68.03 Aligned_cols=36 Identities=11% Similarity=0.143 Sum_probs=29.3
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ 82 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~ 82 (278)
..+++ ++|.||+|||||||+++|++.+. .+...++.
T Consensus 71 ~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-~~~i~~~~ 106 (278)
T 1iy2_A 71 RIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASG 106 (278)
T ss_dssp CCCCE--EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEH
T ss_pred CCCCe--EEEECCCcChHHHHHHHHHHHcC-CCEEEecH
Confidence 56666 89999999999999999999885 44555554
No 229
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.76 E-value=1e-05 Score=71.54 Aligned_cols=62 Identities=18% Similarity=0.251 Sum_probs=49.0
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEEcCCC
Q 023701 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH--DQRVVLVNQDS 84 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~--~~~~~~i~~D~ 84 (278)
+++..+ .+.|+. ..++++++ ...++.+|+|+|++||||||+++.|+..+. ...+.+++.|.
T Consensus 30 ~ie~~~~~~~~~~~~~~~~l~~---------------~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 30 LVESRHPRHQALSTQLLDAIMP---------------YCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp HHHCCCHHHHHHHHHHHHHHGG---------------GCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred HhhcCCchhhhHHHHHHHhCCc---------------ccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 566666 667766 35888988 889999999999999999999999998763 23467777665
Q ss_pred C
Q 023701 85 F 85 (278)
Q Consensus 85 ~ 85 (278)
.
T Consensus 95 ~ 95 (341)
T 2p67_A 95 S 95 (341)
T ss_dssp C
T ss_pred C
Confidence 3
No 230
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.74 E-value=9.1e-06 Score=73.86 Aligned_cols=47 Identities=15% Similarity=0.148 Sum_probs=33.4
Q ss_pred hhhhccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 6 VVDMIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 6 ~~~~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
|..+|+..+ .+.|++ .++++++| . |+|+|++|||||||.+.|.+...
T Consensus 8 ~~~~l~~~~l~~~y~~~~vl~~vsf---------------~------I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 8 LEGYVGFANLPNQVYRKSVKRGFEF---------------T------LMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp -------CCCCCCTTTTTCC-CCCE---------------E------EEEECCTTSSHHHHHHHHTTCCC
T ss_pred CcCcEEEEecceeECCEEEecCCCE---------------E------EEEECCCCCcHHHHHHHHhCCCC
Confidence 445677777 888887 46999999 4 49999999999999999998653
No 231
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.72 E-value=1.9e-05 Score=77.41 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=33.0
Q ss_pred ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 023701 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQL 72 (278)
Q Consensus 21 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l 72 (278)
+.++||+| . .++.+++|+||+||||||+.|.++...
T Consensus 596 ~vlndisl---------------~-~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 596 FIANPLNL---------------S-PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp CCCEEEEE---------------C-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eeeecccc---------------c-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 67999999 6 788999999999999999999999864
No 232
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.72 E-value=1.7e-05 Score=78.69 Aligned_cols=37 Identities=11% Similarity=0.168 Sum_probs=33.9
Q ss_pred CccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 20 GFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 20 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
.+.++||+| ...++.+++|+||+||||||+.+.++..
T Consensus 660 ~~V~ndvsl---------------~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 660 QYVPNNTDL---------------SEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp SSCCEEEEE---------------CTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred ceecccccc---------------cCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 478999999 8899999999999999999999998764
No 233
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.70 E-value=2.7e-05 Score=69.28 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=26.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~~ 74 (278)
..++.+|+|+||+||||||+++.|.+.+++
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhcccC
Confidence 355669999999999999999999998864
No 234
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.68 E-value=3.9e-05 Score=66.52 Aligned_cols=38 Identities=26% Similarity=0.270 Sum_probs=32.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEcCCC
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDS 84 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~l~~--~~~~~i~~D~ 84 (278)
++.+|+|+|++||||||++..|+..+.. ..+.+++.|.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence 8899999999999999999999998753 3467777764
No 235
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.68 E-value=2e-05 Score=64.95 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=32.0
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEEcCCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLH--DQRVVLVNQDS 84 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~--~~~~~~i~~D~ 84 (278)
.+.++.+++|.|++|||||||++.|+..+. ...+.+++.+.
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 357889999999999999999999997653 23456666543
No 236
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.66 E-value=2.8e-05 Score=78.07 Aligned_cols=42 Identities=19% Similarity=0.280 Sum_probs=32.8
Q ss_pred eeee-CC-ccccceeeecccCCCCchhhhhhCCCC-------CEEEEEEcCCCCcHHHHHHHHHHHh
Q 023701 15 GVHF-SG-FHMDGLEVRNKETGQPTISAAENLHRQ-------PFVIGVAGGAASGKTTVCDMIIQQL 72 (278)
Q Consensus 15 ~~~~-~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~-------~~iI~I~G~sGSGKTTla~~L~~~l 72 (278)
.+.| ++ ++++||+| ...+ +.+++|+||+||||||+.|.+ +.+
T Consensus 762 ~~~~~~~~~v~ndi~l---------------~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~ 812 (1022)
T 2o8b_B 762 TKTFFGDDFIPNDILI---------------GCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLL 812 (1022)
T ss_dssp -----CCCCCCEEEEE---------------SCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred EEEecCCceEeeeeee---------------ccccccccCCCCcEEEEECCCCCChHHHHHHH-HHH
Confidence 4556 44 78999999 6655 799999999999999999999 654
No 237
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.66 E-value=2.3e-05 Score=77.82 Aligned_cols=35 Identities=14% Similarity=0.093 Sum_probs=32.3
Q ss_pred ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHH
Q 023701 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQ 70 (278)
Q Consensus 21 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~ 70 (278)
|.++||+| ...++.+++|+||+||||||+.+.++.
T Consensus 650 ~v~ndisl---------------~~~~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 650 FIPNDVYF---------------EKDKQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CCCEEEEE---------------ETTTBCEEEEECCTTSSHHHHHHHHHH
T ss_pred eeccccee---------------ecCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 78899999 888999999999999999999999944
No 238
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.66 E-value=7.2e-05 Score=69.01 Aligned_cols=29 Identities=28% Similarity=0.367 Sum_probs=24.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
..++.+|.++|.+||||||+++.|++.+.
T Consensus 36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 36 TNCPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45678999999999999999999999863
No 239
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.65 E-value=3e-05 Score=67.24 Aligned_cols=40 Identities=18% Similarity=0.273 Sum_probs=33.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCC---CCEEEEcCCCC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHD---QRVVLVNQDSF 85 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~---~~~~~i~~D~~ 85 (278)
.++.+|+|+|++||||||++..|+..+.+ ..+.+++.|.+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 46789999999999999999999998852 35788888874
No 240
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.65 E-value=2.8e-05 Score=75.79 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=31.2
Q ss_pred ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 023701 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQL 72 (278)
Q Consensus 21 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l 72 (278)
++++||+| . +.+++|+|||||||||+.|.++...
T Consensus 567 ~vl~disl---------------~---g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 567 FVPNDLEM---------------A---HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp CCCEEEEE---------------S---SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEeeeccC---------------C---CcEEEEECCCCCChHHHHHHHHhhh
Confidence 67899999 5 8999999999999999999999874
No 241
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.65 E-value=3.3e-05 Score=67.64 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=28.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcC
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ 82 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~ 82 (278)
+..+++|+|++||||||+.+.|.+...+.++.++..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~ 38 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIEN 38 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEe
Confidence 457899999999999999999999764444444443
No 242
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.63 E-value=4.4e-06 Score=77.91 Aligned_cols=39 Identities=31% Similarity=0.374 Sum_probs=31.8
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQ 82 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~-~~~~~i~~ 82 (278)
.+..+..++|+||+||||||++++|.+.+++ .+...+..
T Consensus 256 ~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied 295 (511)
T 2oap_1 256 AIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIED 295 (511)
T ss_dssp HHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEES
T ss_pred HHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcC
Confidence 4567888999999999999999999999865 45555544
No 243
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.63 E-value=3e-05 Score=66.38 Aligned_cols=26 Identities=27% Similarity=0.430 Sum_probs=23.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCC
Q 023701 49 FVIGVAGGAASGKTTVCDMIIQQLHD 74 (278)
Q Consensus 49 ~iI~I~G~sGSGKTTla~~L~~~l~~ 74 (278)
..++|+|+||||||||.+.|++...+
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46899999999999999999998754
No 244
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.60 E-value=4e-05 Score=68.62 Aligned_cols=30 Identities=33% Similarity=0.444 Sum_probs=27.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~~ 74 (278)
..++.+|+|+||+||||||+++.|.+.+++
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 578899999999999999999999998864
No 245
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.60 E-value=3.6e-05 Score=61.12 Aligned_cols=37 Identities=30% Similarity=0.249 Sum_probs=28.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCC--CEEEEcCC
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQD 83 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~l~~~--~~~~i~~D 83 (278)
++.+++|+|++||||||++..|...+... .+.++..|
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~ 41 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH 41 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeC
Confidence 35689999999999999999999987533 35666554
No 246
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.59 E-value=6.2e-05 Score=68.39 Aligned_cols=39 Identities=33% Similarity=0.384 Sum_probs=30.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-CEEEEcCCC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDS 84 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~~-~~~~i~~D~ 84 (278)
.++.+|+|+||+||||||+++.|.+.+++. +-.++..|+
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ 204 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP 204 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence 678899999999999999999999998653 333444443
No 247
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.58 E-value=4.9e-05 Score=61.77 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=29.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDS 84 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~ 84 (278)
..+..|+|+||+||||||+|..|++.. ..+++.|.
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g----~~iIsdDs 66 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRG----HRLIADDR 66 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTT----CEEEESSE
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhC----CeEEecch
Confidence 457789999999999999999999975 37777774
No 248
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.58 E-value=4.1e-05 Score=69.63 Aligned_cols=39 Identities=26% Similarity=0.241 Sum_probs=32.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEcCCCC
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSF 85 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~l~~--~~~~~i~~D~~ 85 (278)
++.+|+|+|++||||||++..|+..+.. ..+.+++.|.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence 7899999999999999999999998864 34677777653
No 249
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.57 E-value=0.0001 Score=62.10 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=28.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023701 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 50 iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
-++|.||+|+||||+++.|++.++. .+..++..++.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~~-~~~~i~~~~~~ 82 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAKV-PFFTISGSDFV 82 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTC-CEEEECSCSST
T ss_pred eEEEECcCCCCHHHHHHHHHHHcCC-CEEEEeHHHHH
Confidence 3889999999999999999998852 35666665544
No 250
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.56 E-value=1.1e-05 Score=76.83 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCC
Q 023701 51 IGVAGGAASGKTTVCDMIIQQLHD 74 (278)
Q Consensus 51 I~I~G~sGSGKTTla~~L~~~l~~ 74 (278)
|+|+|++|||||||+++|++.+.|
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--
T ss_pred EEEECCCCChHHHHHHHHhCCCCC
Confidence 999999999999999999998744
No 251
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.56 E-value=4.6e-05 Score=60.80 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=24.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
+..+++|+|++||||||+++.|.+.+.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 456899999999999999999999864
No 252
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.55 E-value=5.5e-05 Score=67.56 Aligned_cols=42 Identities=17% Similarity=0.343 Sum_probs=33.2
Q ss_pred eeeeCCc-cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 023701 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQL 72 (278)
Q Consensus 15 ~~~~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l 72 (278)
..++.+| .++++++ ....+ +.+|+||+|||||||..+|+-.+
T Consensus 5 ~l~~~~f~~~~~~~i---------------~~~~g-~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 5 RLTVRNFLGLKNVDI---------------EFQSG-ITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEEEEETTEEEEEE---------------ECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEeCccCccceEE---------------ecCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 3445555 3677888 77777 68899999999999999998665
No 253
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.54 E-value=5.3e-05 Score=62.97 Aligned_cols=41 Identities=15% Similarity=0.322 Sum_probs=33.0
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHH--hC------CCCEEEEcCCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQ--LH------DQRVVLVNQDS 84 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~--l~------~~~~~~i~~D~ 84 (278)
.+.++.+++|.|++|||||||++.|+.. +. ..++.+++.+.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 4578899999999999999999999995 32 24567777765
No 254
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.52 E-value=4.8e-05 Score=61.14 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=23.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQL 72 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l 72 (278)
.....|+|.|++|||||||.+.|.+..
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCC
Confidence 345789999999999999999999864
No 255
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.48 E-value=0.00011 Score=63.81 Aligned_cols=41 Identities=29% Similarity=0.382 Sum_probs=33.8
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEEcCCCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLH--DQRVVLVNQDSF 85 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~--~~~~~~i~~D~~ 85 (278)
..+ +.+|+++|++|+||||++..|+..+. +..+.+++.|.+
T Consensus 95 ~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 95 DKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp SSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 555 89999999999999999999999874 335677777764
No 256
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.00022 Score=64.23 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=31.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
..+++=|.+.||+|+|||++|+++++.++ ..+..++..++.
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~~-~~f~~v~~s~l~ 219 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHTD-CKFIRVSGAELV 219 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHHT-CEEEEEEGGGGS
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhhC-CCceEEEhHHhh
Confidence 45566789999999999999999999985 234555555444
No 257
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.47 E-value=1.5e-05 Score=78.16 Aligned_cols=36 Identities=28% Similarity=0.474 Sum_probs=32.2
Q ss_pred cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHH-HHHHh
Q 023701 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDM-IIQQL 72 (278)
Q Consensus 22 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~-L~~~l 72 (278)
.|+||+| .++.+.+++|+|+||||||||++. |.+.+
T Consensus 512 ~L~~vsl---------------~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l 548 (842)
T 2vf7_A 512 NLDNLDV---------------RFPLGVMTSVTGVSGSGKSTLVSQALVDAL 548 (842)
T ss_dssp TEEEEEE---------------EEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred ccccceE---------------EEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence 4899999 999999999999999999999996 66543
No 258
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=97.46 E-value=0.00022 Score=65.98 Aligned_cols=38 Identities=16% Similarity=0.271 Sum_probs=34.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcC
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ 82 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~ 82 (278)
...+.+|.+-|.-||||+|..+.|.+.++|.++.++..
T Consensus 40 ~~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~ 77 (500)
T 3czp_A 40 ARFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSF 77 (500)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEEC
T ss_pred CCCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEe
Confidence 46789999999999999999999999999998877654
No 259
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.46 E-value=0.0001 Score=66.56 Aligned_cols=42 Identities=10% Similarity=0.230 Sum_probs=31.5
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHh-C-------CCCEEEEcCCCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQL-H-------DQRVVLVNQDSF 85 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l-~-------~~~~~~i~~D~~ 85 (278)
-+.++.+++|+|++|||||||++.|+-.. . ..++.+++.+.-
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~ 223 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT 223 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc
Confidence 45778899999999999999999776432 1 123677777653
No 260
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.45 E-value=9.4e-05 Score=65.82 Aligned_cols=41 Identities=17% Similarity=0.258 Sum_probs=33.9
Q ss_pred eeeCCc-cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 023701 16 VHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQL 72 (278)
Q Consensus 16 ~~~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l 72 (278)
....+| .++++++ ...++ +.+|+|++||||||+..+|....
T Consensus 9 L~l~~~~~~~~~~~---------------~~~~g-~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 9 LSTLNYRNLAPGTL---------------NFPEG-VTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp EEEESBTTCCSEEE---------------ECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEeCccceeeeEE---------------EEcCC-eEEEECCCCCChhHHHHHHHHhc
Confidence 334454 3788999 88888 99999999999999999999754
No 261
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.40 E-value=3.3e-05 Score=76.62 Aligned_cols=32 Identities=28% Similarity=0.465 Sum_probs=30.2
Q ss_pred cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHH
Q 023701 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMI 68 (278)
Q Consensus 22 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L 68 (278)
.|++|+| .++.|.+++|+|+||||||||++.|
T Consensus 657 ~Lk~Vsl---------------~I~~GeivaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 657 NLRGIDV---------------SFPLGVLTSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp TCCSEEE---------------EEESSSEEEEECSTTSSHHHHHTTT
T ss_pred cccCceE---------------EECCCCEEEEEcCCCCCHHHHHHHH
Confidence 4899999 9999999999999999999999985
No 262
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.39 E-value=4.5e-05 Score=66.26 Aligned_cols=37 Identities=19% Similarity=0.228 Sum_probs=20.9
Q ss_pred ceeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 14 SGVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 14 ~~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
..+.|++ .++++++| . |+|.|++|||||||.+.|.+.
T Consensus 4 l~~~~~~~~~l~~~~~---------------~------I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 4 LPNQVHRKSVKKGFEF---------------T------LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp --------------CE---------------E------EEEEEETTSSHHHHHHHHHC-
T ss_pred CcceECCEEEEcCCCE---------------E------EEEECCCCCCHHHHHHHHhCC
Confidence 3677887 46889998 4 399999999999999998864
No 263
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.38 E-value=0.00019 Score=59.55 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=31.9
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHh--CCCCEEEEcCCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQL--HDQRVVLVNQDS 84 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l--~~~~~~~i~~D~ 84 (278)
-..++.+++|.|++||||||++..++..+ ...++.+++.+.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 46788999999999999999988776654 234577777654
No 264
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.38 E-value=6.2e-05 Score=66.80 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=34.3
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhC--C------CCEEEEcCCCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLH--D------QRVVLVNQDSF 85 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~--~------~~~~~i~~D~~ 85 (278)
.++++.+++|.|++|||||||++.|+..+. + ..+.+++..+.
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence 678999999999999999999999999872 1 12477777654
No 265
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.38 E-value=0.00012 Score=68.06 Aligned_cols=40 Identities=13% Similarity=0.186 Sum_probs=32.2
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
..+++ ++|.||+|+|||||+++|++.+. .++..++..++.
T Consensus 62 ~ip~G--vLL~GppGtGKTtLaraIa~~~~-~~~i~i~g~~~~ 101 (499)
T 2dhr_A 62 RIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFV 101 (499)
T ss_dssp CCCSE--EEEECSSSSSHHHHHHHHHHHTT-CCEEEEEGGGGT
T ss_pred CCCce--EEEECCCCCCHHHHHHHHHHHhC-CCEEEEehhHHH
Confidence 55555 89999999999999999999885 456777765554
No 266
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.35 E-value=3.2e-05 Score=76.49 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=30.1
Q ss_pred cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHH
Q 023701 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMI 68 (278)
Q Consensus 22 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L 68 (278)
.|++|+| .++.|.+++|+|+||||||||++.|
T Consensus 639 ~Lk~Vsl---------------~I~~Geiv~I~G~nGSGKSTLl~~l 670 (972)
T 2r6f_A 639 NLKNVSV---------------KIPLGTFVAVTGVSGSGKSTLVNEV 670 (972)
T ss_dssp SCCSEEE---------------EEESSSEEECCBCTTSSHHHHHTTT
T ss_pred ccccceE---------------EEcCCCEEEEEcCCCCCHHHHHHHH
Confidence 4899999 9999999999999999999999985
No 267
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.33 E-value=0.00019 Score=65.39 Aligned_cols=41 Identities=32% Similarity=0.443 Sum_probs=33.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLH--DQRVVLVNQDSFY 86 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~--~~~~~~i~~D~~~ 86 (278)
.++.+|+++|++||||||++..|+..+. +..+.+++.|.+-
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r 137 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR 137 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 3589999999999999999999998875 3456777888643
No 268
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=97.31 E-value=0.00017 Score=62.33 Aligned_cols=88 Identities=14% Similarity=0.166 Sum_probs=46.3
Q ss_pred cCCCcEEEEcccccCCchHHh--hhcCeEEEEecChhhhhHHhhhccccccCCCHHHHHHHHhhcccccccccccccccc
Q 023701 146 VNPSDVILLEGILVFHDSRVR--ELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKY 223 (278)
Q Consensus 146 ~~~~~iiiidg~~~~~d~~~~--~~~d~~I~l~~~~e~~l~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 223 (278)
+..+..+|+|--..+. ..+. ...-+.|||.+|....++++.+|.... ..+....+.... ... +...
T Consensus 186 ~~~gk~viLdid~qg~-~~lk~~~~~pi~IFI~PpS~e~L~~r~~~r~~e---~~~~~~~r~~k~----e~e----~~~~ 253 (292)
T 3tvt_A 186 AEKGKHCILDVSGNAI-KRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTEE---QAKKTYERAIKM----EQE----FGEY 253 (292)
T ss_dssp HHHTCEEEECCCTHHH-HHHHHTTCCCEEEEECCSCHHHHHHTCTTSCTT---HHHHHHHHHHHH----HHH----HTTT
T ss_pred HHcCCcEEEeccchhh-hhcccccccceEEEEECCCHHHHHHHHhCCCch---hHHHHHHHHHHH----HHh----hhhh
Confidence 3456677777654332 1222 223489999998777777766654322 222332222110 011 1456
Q ss_pred ccEEeeCCCCcHHHHHHHHHHHHHhhc
Q 023701 224 ADIIIPRGGDNHVAIDLIVQHIRTKLG 250 (278)
Q Consensus 224 aD~iI~n~~~~~~~~~~i~~~i~~~l~ 250 (278)
.|++|.|+ + ++..+++|+..+.
T Consensus 254 fD~vIvNd-d----le~a~~~l~~iI~ 275 (292)
T 3tvt_A 254 FTGVVQGD-T----IEEIYSKVKSMIW 275 (292)
T ss_dssp CSEEECCS-S----HHHHHHHHHHHHH
T ss_pred CCEEEECc-C----HHHHHHHHHHHHH
Confidence 89999887 3 4444555554443
No 269
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=97.31 E-value=0.0002 Score=56.84 Aligned_cols=37 Identities=22% Similarity=0.238 Sum_probs=30.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
..+.-|+|+|+||+||||+|..|.+. |..+++.|...
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~r----G~~lvaDD~v~ 50 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALIDR----GHQLVCDDVID 50 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHHT----TCEEEESSEEE
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHc----CCeEecCCEEE
Confidence 45677999999999999999999994 67777776433
No 270
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.31 E-value=8.4e-05 Score=63.59 Aligned_cols=29 Identities=14% Similarity=0.110 Sum_probs=26.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
..++.+++|.|++|||||||++.|+..+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 46889999999999999999999998653
No 271
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.25 E-value=0.00031 Score=64.02 Aligned_cols=40 Identities=25% Similarity=0.384 Sum_probs=34.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEcCCCCC
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSFY 86 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~l~~--~~~~~i~~D~~~ 86 (278)
++.+|+++|++||||||++..|+..+.. ..+.+++.|.+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R 140 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR 140 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 5899999999999999999999988753 457788888765
No 272
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.23 E-value=0.00048 Score=57.79 Aligned_cols=40 Identities=15% Similarity=0.210 Sum_probs=31.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
..+.-+.|.||+|+||||+|+.|++.+. ..+..++..++.
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~-~~~~~~~~~~~~ 76 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQ-VPFLAMAGAEFV 76 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT-CCEEEEETTTTS
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC-CCEEEechHHHH
Confidence 3445588999999999999999999885 335666766654
No 273
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.23 E-value=0.00037 Score=60.97 Aligned_cols=41 Identities=10% Similarity=0.135 Sum_probs=32.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
.++.-|.|.||+|+||||+|+++++.+....+..++..++.
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 44567899999999999999999999844456667766554
No 274
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.22 E-value=0.0001 Score=72.48 Aligned_cols=35 Identities=23% Similarity=0.404 Sum_probs=30.6
Q ss_pred eeeCC--cc-ccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHH
Q 023701 16 VHFSG--FH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVC 65 (278)
Q Consensus 16 ~~~~~--~~-l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla 65 (278)
+...| -+ |+||++ .++.+++++|+|.||||||||+
T Consensus 16 I~i~gar~hNLkni~v---------------~iP~~~l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 16 VQVRGARQHNLKDISV---------------KVPRDALVVFTGVSGSGKSSLA 53 (842)
T ss_dssp EEEEEECSTTCCSEEE---------------EEESSSEEEEESSTTSSHHHHH
T ss_pred EEEeeccccCCCCeeE---------------EecCCCEEEEECCCCCCHHHHH
Confidence 44545 23 999999 9999999999999999999998
No 275
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.21 E-value=0.00021 Score=67.14 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=30.8
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDS 84 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~ 84 (278)
.. ++..++|.||+|+||||+++.|++.+.+ .+..++...
T Consensus 105 ~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~-~~~~i~~~~ 143 (543)
T 3m6a_A 105 SL-KGPILCLAGPPGVGKTSLAKSIAKSLGR-KFVRISLGG 143 (543)
T ss_dssp SC-CSCEEEEESSSSSSHHHHHHHHHHHHTC-EEEEECCCC
T ss_pred cC-CCCEEEEECCCCCCHHHHHHHHHHhcCC-CeEEEEecc
Confidence 44 6789999999999999999999999853 344555443
No 276
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.21 E-value=0.0001 Score=63.90 Aligned_cols=30 Identities=20% Similarity=0.162 Sum_probs=26.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~~ 74 (278)
...+.+++|.|+||||||||.+.|++...+
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhcccccc
Confidence 345789999999999999999999997653
No 277
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.20 E-value=0.00023 Score=66.44 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=31.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEEcCCCC
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH--DQRVVLVNQDSF 85 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~--~~~~~~i~~D~~ 85 (278)
..++.+|.++|.+||||||+++.|++.++ .....+++.|++
T Consensus 32 ~~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 32 TNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 45678999999999999999999999874 223456676653
No 278
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.20 E-value=0.00016 Score=62.78 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=24.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
.-.+.+++|.|+||||||||.+.|. .+.
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 4567899999999999999999999 654
No 279
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.19 E-value=0.00015 Score=71.80 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=27.7
Q ss_pred cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHH
Q 023701 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVC 65 (278)
Q Consensus 22 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla 65 (278)
.|++||| .++.+.+++|+|+||||||||+
T Consensus 599 ~Lk~Vsl---------------~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 599 NLKNIDV---------------EIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp TCCSEEE---------------EEESSSEEEEECSTTSSHHHHH
T ss_pred cccccce---------------EEcCCcEEEEEccCCCChhhhH
Confidence 4999999 9999999999999999999997
No 280
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.19 E-value=0.00033 Score=54.22 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHh
Q 023701 48 PFVIGVAGGAASGKTTVCDMIIQQL 72 (278)
Q Consensus 48 ~~iI~I~G~sGSGKTTla~~L~~~l 72 (278)
+.+.+|+||+||||||+..+|.-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999998765
No 281
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.18 E-value=0.0027 Score=55.42 Aligned_cols=37 Identities=22% Similarity=0.194 Sum_probs=28.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQD 83 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D 83 (278)
.....+.|.|++|+||||+|+.++..+.. .+..++..
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~~~~-~~~~~~~~ 89 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYEMSA-NIKTTAAP 89 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHHTTC-CEEEEEGG
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCC-CeEEecch
Confidence 33445899999999999999999998752 34555553
No 282
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.18 E-value=0.00043 Score=59.43 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=30.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
.+.-+.|.||+|+||||+|+.|++.+. ..+..++...+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~-~~~~~i~~~~l~ 91 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS-ATFLNISAASLT 91 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT-CEEEEEESTTTS
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC-CCeEEeeHHHHh
Confidence 456789999999999999999999884 234556665443
No 283
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.16 E-value=0.00028 Score=61.78 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=24.8
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQL 72 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l 72 (278)
...++ +.+|+|++|||||||..+|.-.+
T Consensus 21 ~~~~g-~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 21 GFSDR-VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp ECCSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred ecCCC-cEEEECCCCCcHHHHHHHHHHHh
Confidence 66777 89999999999999999999654
No 284
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.16 E-value=0.00026 Score=55.83 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=23.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
..+..+.|+|++|+||||+++.+++.+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3445688999999999999999999873
No 285
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.15 E-value=3.8e-05 Score=63.98 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=23.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCC
Q 023701 49 FVIGVAGGAASGKTTVCDMIIQQLHD 74 (278)
Q Consensus 49 ~iI~I~G~sGSGKTTla~~L~~~l~~ 74 (278)
.+++|+||+|||||||+++|+..+.+
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~ 53 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIP 53 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccccc
Confidence 57899999999999999999999864
No 286
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=97.15 E-value=0.00029 Score=60.92 Aligned_cols=173 Identities=12% Similarity=0.119 Sum_probs=79.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEE-EcCCCCCCCCCHHHHHHcc-ccCCCCCCcccHHHHHHHHHHhhcC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVL-VNQDSFYHNLTEQELARVH-EYNFDHPDAFDTEKLLSSMEKLRHG 123 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~-i~~D~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~l~~~~~~ 123 (278)
..++.|.|+|| ||+||.+.|...++ .++.+ ++... ...++.+.-+ .|.|- -..+.+.+ .+..+
T Consensus 103 ~~~r~ivl~GP---gK~tl~~~L~~~~~-~~~~~~vs~TT----R~~R~gE~~G~dY~Fv----~s~eef~~---~i~~g 167 (295)
T 1kjw_A 103 HYARPIIILGP---TKDRANDDLLSEFP-DKFGSCVPHTT----RPKREYEIDGRDYHFV----SSREKMEK---DIQAH 167 (295)
T ss_dssp CSCCCEEEEST---THHHHHHHHHHHCT-TTEECCCCEEC----SCCCTTCCBTTTBEEC----SCHHHHHH---HHHTT
T ss_pred CCCCEEEEECC---CHHHHHHHHHhhCc-cceeeeeeecc----cCCCCccccCceeEec----CCHHHHHH---HHHCC
Confidence 45678889998 79999999999764 12211 11000 0000000000 11121 02222222 33344
Q ss_pred CCccccccCCcCC-cCCCCCccccCCCcEEEEcccccCCchHHh--hhcCeEEEEecChhhhhHHhhhccccccCCCHHH
Q 023701 124 QAVDIPNYDFKSY-KNNVFPARRVNPSDVILLEGILVFHDSRVR--ELMNMKIFVDTDADVRLARRIRRDTVEKGRDIAT 200 (278)
Q Consensus 124 ~~i~~~~~~~~~~-~~~~~~~~~~~~~~iiiidg~~~~~d~~~~--~~~d~~I~l~~~~e~~l~R~~~R~~~~~~~~~~~ 200 (278)
..+....+..... .........+..+..+|+|.-.... ..+. ..+-+.|||.++....++++..|. . .++
T Consensus 168 ~flE~~~~~g~~YGt~~~~V~~~~~~G~~vildid~~g~-~~l~~~~~~pi~IfI~pps~~~L~~L~~R~-t-----~~~ 240 (295)
T 1kjw_A 168 KFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAV-RRLQAAHLHPIAIFIRPRSLENVLEINKRI-T-----EEQ 240 (295)
T ss_dssp CEEEEEEETTEEEEEEHHHHHHHHHTTCEEEECCCTTHH-HHHHHTTCCCEEEEECCSSHHHHHHHCTTS-C-----HHH
T ss_pred CcEEEEEEcCcEeeeeHHHHHHHHhcCCeEEEEeCHHHH-HHHHhcccCCeEEEEECCCHHHHHHHHhcC-C-----HHH
Confidence 4444333322111 1100011234556778888755442 1222 234589999998777777754443 1 122
Q ss_pred HHHHHhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHH
Q 023701 201 VLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIR 246 (278)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~i~~~i~ 246 (278)
+..++..... .... +...+|++|.|+ +.+.+++.+...|.
T Consensus 241 i~~rl~~a~~-~e~~----~~~~fd~vivNd-~le~a~~~l~~ii~ 280 (295)
T 1kjw_A 241 ARKAFDRATK-LEQE----FTECFSAIVEGD-SFEEIYHKVKRVIE 280 (295)
T ss_dssp HHHHHHHHHH-HHHH----HGGGCSEEECCS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHh----ccccCeEEEECc-CHHHHHHHHHHHHH
Confidence 2222221100 0000 134689899887 44445555555444
No 287
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=97.15 E-value=0.00043 Score=64.10 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=33.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcC
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ 82 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~ 82 (278)
.+.+.+|++-|.-||||+|..+.|.+.++|.++.++..
T Consensus 297 ~~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~ 334 (500)
T 3czp_A 297 RQHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPI 334 (500)
T ss_dssp GGCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEEC
T ss_pred CCCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEe
Confidence 35789999999999999999999999999888877654
No 288
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.15 E-value=0.00025 Score=61.42 Aligned_cols=29 Identities=17% Similarity=0.151 Sum_probs=26.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
...+..|.|.||+|+||||+|++|++.+.
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 46677899999999999999999999874
No 289
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.12 E-value=0.00046 Score=61.23 Aligned_cols=54 Identities=20% Similarity=0.247 Sum_probs=39.2
Q ss_pred CCCCchhhhhh--CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEcCCCCC
Q 023701 33 TGQPTISAAEN--LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSFY 86 (278)
Q Consensus 33 ~~~~~~~~~~~--~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~--~~~~~i~~D~~~ 86 (278)
++.|..+.+-. -+.++.++.|.||+|||||||+..++..+.. ..+.+++.+.-.
T Consensus 44 TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 44 TGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL 101 (356)
T ss_dssp CSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred CCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 33344444433 4567899999999999999999999987632 346788887544
No 290
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.12 E-value=0.00013 Score=72.37 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=30.6
Q ss_pred eeeCC--cc-ccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHH
Q 023701 16 VHFSG--FH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVC 65 (278)
Q Consensus 16 ~~~~~--~~-l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla 65 (278)
+...| -+ |+||++ .+++.++|+|+|.|||||||||
T Consensus 26 I~i~gar~hNLkni~v---------------~iP~~~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 26 LIVKGAREHNLRSVDL---------------DLPRDALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp EEEEEECSSSCCSEEE---------------EEESSSEEEEEESTTSSHHHHH
T ss_pred EEEecccccccCceee---------------eccCCCEEEEECCCCCcHHHHH
Confidence 44555 33 999999 9999999999999999999987
No 291
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.11 E-value=0.00014 Score=72.10 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=30.5
Q ss_pred eeeCC--cc-ccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHH
Q 023701 16 VHFSG--FH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVC 65 (278)
Q Consensus 16 ~~~~~--~~-l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla 65 (278)
+...| -+ |+||++ .+++.++|+|+|.|||||||||
T Consensus 24 I~i~gar~hNLkni~v---------------~iP~~~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 24 IIVKGARAHNLKNIDV---------------EIPRGKLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp EEEEEECSSSCCSEEE---------------EEETTSEEEEEESTTSSHHHHH
T ss_pred EEEeccccccCCceee---------------eccCCcEEEEECCCCCCHHHHH
Confidence 44555 34 999999 9999999999999999999987
No 292
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.11 E-value=0.00038 Score=59.31 Aligned_cols=40 Identities=18% Similarity=0.227 Sum_probs=30.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
..+.-+.|.||+|+||||+++.|++.+.. .+..++...+.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~-~~~~v~~~~~~ 88 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETNA-TFIRVVGSELV 88 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTTC-EEEEEEGGGGC
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCC-CEEEEehHHHH
Confidence 45566999999999999999999999852 34555554444
No 293
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.10 E-value=0.00022 Score=63.28 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=24.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
++.+++|+|+||||||||.+.|.+.+.
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCCEEEEECCCCccHHHHHHHHhcccc
Confidence 567999999999999999999998653
No 294
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=97.09 E-value=0.00026 Score=62.27 Aligned_cols=29 Identities=17% Similarity=0.098 Sum_probs=26.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~ 74 (278)
.+++.|.|.|+.||||||+++.|++.+..
T Consensus 5 ~~~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 5 VTIVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 45789999999999999999999999864
No 295
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.09 E-value=0.00049 Score=59.33 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=30.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCC--CEEEEcCCCCC
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDSFY 86 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~l~~~--~~~~i~~D~~~ 86 (278)
+...+.|.||+|+||||+|+.|++.+... .+..+++..+.
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~ 87 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM 87 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCC
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccc
Confidence 34689999999999999999999987532 25666665443
No 296
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.09 E-value=0.00033 Score=56.39 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 48 PFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 48 ~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
...|+|.|++|||||||.+.|.+.
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 467999999999999999999985
No 297
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.09 E-value=0.00029 Score=60.84 Aligned_cols=37 Identities=19% Similarity=0.649 Sum_probs=29.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcC
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ 82 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~ 82 (278)
.+.+..+.|.||+|+|||++|+.|++.++ ..+..+++
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~-~~~i~v~~ 69 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMG-INPIMMSA 69 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHT-CCCEEEEH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCEEEEeH
Confidence 45567889999999999999999999985 23455554
No 298
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.09 E-value=0.00037 Score=61.71 Aligned_cols=39 Identities=21% Similarity=0.451 Sum_probs=31.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEcCCC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDS 84 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~--~~~~~i~~D~ 84 (278)
.++.+|+|+|++|||||||.+.|.+.+.+ ..+.++..|.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecC
Confidence 45789999999999999999999997632 3466666664
No 299
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.09 E-value=0.00065 Score=61.94 Aligned_cols=41 Identities=29% Similarity=0.435 Sum_probs=34.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhC---CCCEEEEcCCCCC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLH---DQRVVLVNQDSFY 86 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~---~~~~~~i~~D~~~ 86 (278)
.++.+|+++|++||||||++-.|+..+. +..+.+++.|.+-
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r 141 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR 141 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 5678999999999999999999998774 4568899998754
No 300
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.08 E-value=0.0003 Score=56.85 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=23.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 49 FVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 49 ~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
..+.|.|++|+||||++++|+..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999999999874
No 301
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=97.07 E-value=0.00031 Score=62.62 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=25.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEE
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVV 78 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~ 78 (278)
..+++.|.|.|+.||||||+++.|++.+...++.
T Consensus 46 ~~~~~fIt~EG~dGsGKTT~~~~Lae~L~~~gvv 79 (376)
T 1of1_A 46 MPTLLRVYIDGPHGMGKTTTTQLLVALGSRDDIV 79 (376)
T ss_dssp CCEEEEEEECSSTTSSHHHHHHHHHC----CCEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhhhCCEE
Confidence 3567889999999999999999999988655533
No 302
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.06 E-value=0.00032 Score=57.72 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=29.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEcCCC
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDS 84 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~l~~--~~~~~i~~D~ 84 (278)
.+..+.|.||+|+||||+++.+++.+.. ..+.+++..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 5677999999999999999999998742 2345665544
No 303
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.04 E-value=0.00013 Score=72.40 Aligned_cols=28 Identities=18% Similarity=0.351 Sum_probs=27.4
Q ss_pred ccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHH
Q 023701 23 MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVC 65 (278)
Q Consensus 23 l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla 65 (278)
|+||++ .+++.++++|+|+||||||+||
T Consensus 14 Lkni~~---------------~ip~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 14 LKNITV---------------RIPKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp CCSBCC---------------EEETTSEEEEEESTTSSSHHHH
T ss_pred cCccee---------------ccCCCcEEEEECCCCCcHHHHH
Confidence 999999 9999999999999999999998
No 304
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.03 E-value=0.00022 Score=57.55 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=27.1
Q ss_pred eeeCCc--cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHH
Q 023701 16 VHFSGF--HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQ 70 (278)
Q Consensus 16 ~~~~~~--~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~ 70 (278)
..|+++ .++++++ ..+. ..|+|.|++|||||||.+.|.+
T Consensus 7 ~~~~~~~~~l~~~~~---------------~~~~-~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 7 WIYSGFSSVLQFLGL---------------YKKT-GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp ------CHHHHHHTC---------------TTCC-EEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhc---------------cCCC-cEEEEECCCCCCHHHHHHHHhc
Confidence 346664 4788888 5444 5689999999999999999865
No 305
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.02 E-value=0.00031 Score=55.29 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=23.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
..+..+.|.|++|+||||+++.+++.+.
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3345678999999999999999999873
No 306
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=97.02 E-value=0.00031 Score=61.65 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=24.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEE
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVV 78 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~ 78 (278)
.++.|.|.|+.||||||+++.|++.+...++.
T Consensus 3 ~~~fI~~EG~dGsGKTT~~~~La~~L~~~gv~ 34 (331)
T 1e2k_A 3 TLLRVYIDGPHGMGKTTTTQLLVALGSRDDIV 34 (331)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC----CCEE
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHhhhCCEE
Confidence 46789999999999999999999988654533
No 307
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.02 E-value=0.00045 Score=63.69 Aligned_cols=35 Identities=17% Similarity=0.273 Sum_probs=28.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023701 51 IGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 51 I~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
|.|.||+|+||||+++++++.++. .+..++..++.
T Consensus 52 vLL~GppGtGKT~Laraia~~~~~-~f~~is~~~~~ 86 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEANV-PFFHISGSDFV 86 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTC-CEEEEEGGGTT
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC-CeeeCCHHHHH
Confidence 889999999999999999998852 35556665544
No 308
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.00 E-value=0.00033 Score=56.04 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=20.7
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
..+. ..|+|.|++|||||||.+.|.+.
T Consensus 20 ~~~~-~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 20 WNKH-GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -----CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cCCc-cEEEEECCCCCCHHHHHHHHhcC
Confidence 4444 46899999999999999999873
No 309
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.99 E-value=8.1e-05 Score=64.79 Aligned_cols=30 Identities=27% Similarity=0.278 Sum_probs=24.4
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
...++.+++|.|+||||||||.+.|.+.+.
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhccccc
Confidence 345688999999999999999999988653
No 310
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.00068 Score=61.73 Aligned_cols=44 Identities=11% Similarity=0.186 Sum_probs=33.9
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHN 88 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~~ 88 (278)
....++=|.+.||+|+|||++|++++..++ ..+..++..++...
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~-~~~~~v~~s~l~sk 254 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIG-ANFIFSPASGIVDK 254 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHT-CEEEEEEGGGTCCS
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhC-CCEEEEehhhhccc
Confidence 356677899999999999999999999985 23556666555533
No 311
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.99 E-value=0.00084 Score=59.51 Aligned_cols=40 Identities=23% Similarity=0.382 Sum_probs=32.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEEcCCC
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH--DQRVVLVNQDS 84 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~--~~~~~~i~~D~ 84 (278)
..+..+|+|+|++|+||||++..|+..+. +..+.+++.|.
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp 117 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDP 117 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCC
Confidence 46778999999999999999999998863 34567777774
No 312
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.99 E-value=0.00045 Score=55.25 Aligned_cols=33 Identities=30% Similarity=0.505 Sum_probs=26.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCC
Q 023701 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDS 84 (278)
Q Consensus 50 iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~ 84 (278)
+|.|+|++||||||+|..|+.. . ....++....
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~-~~~~yiaT~~ 33 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-A-PQVLYIATSQ 33 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-C-SSEEEEECCC
T ss_pred CEEEECCCCCcHHHHHHHHHhc-C-CCeEEEecCC
Confidence 3789999999999999999976 3 3456666643
No 313
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.97 E-value=0.00058 Score=53.77 Aligned_cols=31 Identities=16% Similarity=0.263 Sum_probs=24.3
Q ss_pred hhhCCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 41 AENLHRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 41 ~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
.+....+...|+|+|.+|||||||.+.|...
T Consensus 11 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 11 VPSENLPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp ---CCCCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccCCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 3334556678999999999999999999864
No 314
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.97 E-value=0.00015 Score=68.98 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=28.1
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ 75 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~ 75 (278)
....+..++|.||+|+||||+++.|++.+++.
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred cccCCCEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 56667799999999999999999999988643
No 315
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.96 E-value=0.00075 Score=61.34 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=32.9
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYH 87 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~ 87 (278)
....++=|.+.||+|+|||++|+++|+.++ ..+..++..++..
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~~-~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANSTK-AAFIRVNGSEFVH 244 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHHT-CEEEEEEGGGTCC
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhC-CCeEEEecchhhc
Confidence 345667799999999999999999999985 2355566655543
No 316
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.96 E-value=0.00052 Score=54.55 Aligned_cols=36 Identities=19% Similarity=0.127 Sum_probs=22.8
Q ss_pred CchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 36 PTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 36 ~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
|.+.+......+...|+|+|.+|||||||.+.|...
T Consensus 8 ~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 8 HGSLVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp -----------CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cccccCCCCCCceEEEEEECCCCCCHHHHHHHHHcC
Confidence 444444444566789999999999999999999873
No 317
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.96 E-value=0.00041 Score=54.57 Aligned_cols=26 Identities=15% Similarity=0.365 Sum_probs=22.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
+++..|+|+|++|||||||.+.|.+.
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999999874
No 318
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.94 E-value=0.00088 Score=56.81 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=26.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
...+.-+.|.||+|+||||+|+.++..+.
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 45667899999999999999999999875
No 319
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.00074 Score=61.46 Aligned_cols=43 Identities=16% Similarity=0.122 Sum_probs=33.2
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYH 87 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~~ 87 (278)
..+.++=|.+.||+|+|||++|+++++.++ ..+..++..++..
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~e~~-~~f~~v~~s~l~~ 253 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAAQTN-ATFLKLAAPQLVQ 253 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHT-CEEEEEEGGGGCS
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHHHhC-CCEEEEehhhhhh
Confidence 356677899999999999999999999985 2355566655543
No 320
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.93 E-value=0.00079 Score=62.48 Aligned_cols=41 Identities=29% Similarity=0.390 Sum_probs=32.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLH--DQRVVLVNQDSFY 86 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~--~~~~~~i~~D~~~ 86 (278)
.++.+|+|+|++||||||++..|+..+. +..+.+++.|.+-
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r 141 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR 141 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 4578999999999999999999997764 3467888888754
No 321
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.92 E-value=0.00045 Score=53.83 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 48 PFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 48 ~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
...|+|.|++|+|||||.+.|.+.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 367999999999999999999873
No 322
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.91 E-value=0.00042 Score=63.20 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=33.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLH--DQRVVLVNQDSFY 86 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~--~~~~~~i~~D~~~ 86 (278)
.++.+|+|+|++||||||++..|+..+. +..+.+++.|.+.
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r 139 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR 139 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccC
Confidence 3457899999999999999999999874 2357888998765
No 323
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.90 E-value=0.00015 Score=63.81 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=21.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q 023701 51 IGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 51 I~I~G~sGSGKTTla~~L~~~l~ 73 (278)
+++.||+|+||||+++.|++.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 89999999999999999999874
No 324
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.89 E-value=0.00076 Score=53.65 Aligned_cols=28 Identities=18% Similarity=0.445 Sum_probs=23.7
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
...+...|+|.|.+|||||||.+.|...
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4455679999999999999999888773
No 325
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.89 E-value=0.00061 Score=53.89 Aligned_cols=25 Identities=20% Similarity=0.496 Sum_probs=22.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
+...|+|.|++|||||||.+.|.+.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999873
No 326
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.87 E-value=0.0008 Score=59.60 Aligned_cols=51 Identities=20% Similarity=0.185 Sum_probs=37.1
Q ss_pred Cchhhhhh--CCCCCEEEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 023701 36 PTISAAEN--LHRQPFVIGVAGGAASGKTTVCDMIIQQLH--DQRVVLVNQDSFY 86 (278)
Q Consensus 36 ~~~~~~~~--~~~~~~iI~I~G~sGSGKTTla~~L~~~l~--~~~~~~i~~D~~~ 86 (278)
|..+..-. -..++.++.|.|++|||||||+..++.... ...+.+++.+.-.
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~ 101 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHAL 101 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCc
Confidence 33444433 455788999999999999999999987652 3457888887533
No 327
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.85 E-value=0.0013 Score=58.03 Aligned_cols=42 Identities=10% Similarity=0.175 Sum_probs=33.9
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHh--------CCCCEEEEcCCCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQL--------HDQRVVLVNQDSF 85 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l--------~~~~~~~i~~D~~ 85 (278)
-++++.++.|.|++|||||||+..|+... ...++.+++.+.-
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 46789999999999999999999999863 1235678877653
No 328
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.85 E-value=0.00064 Score=52.10 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHh
Q 023701 48 PFVIGVAGGAASGKTTVCDMIIQQL 72 (278)
Q Consensus 48 ~~iI~I~G~sGSGKTTla~~L~~~l 72 (278)
+.-|.|.|++|+|||++|+.|....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3447899999999999999999975
No 329
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.84 E-value=0.0007 Score=53.92 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=23.9
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
.......|+|+|.+|||||||.+.|.+.
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 21 DYNFVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcC
Confidence 3445578999999999999999999884
No 330
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.83 E-value=0.00072 Score=55.25 Aligned_cols=26 Identities=19% Similarity=0.347 Sum_probs=23.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 48 PFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 48 ~~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
+..+.|.|++|+||||+++.+++.+.
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34789999999999999999999874
No 331
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=96.83 E-value=0.00042 Score=61.04 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=28.5
Q ss_pred CCCCCEEEEEEcCCCCcHHHHH-HHHHHHhCCCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVC-DMIIQQLHDQR 76 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla-~~L~~~l~~~~ 76 (278)
...++++|.|.|+.||||||++ +.|++.+...+
T Consensus 8 ~~~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~~g 41 (341)
T 1osn_A 8 VKMGVLRIYLDGAYGIGKTTAAEEFLHHFAITPN 41 (341)
T ss_dssp CCEEEEEEEEEESSSSCTTHHHHHHHHTTTTSGG
T ss_pred ccCCceEEEEeCCCCCCHHHHHHHHHHHHHhhCC
Confidence 4566789999999999999999 99999986444
No 332
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.82 E-value=0.00056 Score=59.24 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
.+...|+|+|++|||||||.+.|.+.
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCC
Confidence 44568999999999999999999974
No 333
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.80 E-value=0.00033 Score=63.56 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=25.9
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
..+.+..|+|.|++|||||||.+.|++.
T Consensus 153 elk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 153 ELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 6778889999999999999999999886
No 334
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.80 E-value=0.00079 Score=57.99 Aligned_cols=41 Identities=27% Similarity=0.399 Sum_probs=30.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCC------CCEEEEcCCCCC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLVNQDSFY 86 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~------~~~~~i~~D~~~ 86 (278)
..+.-+.|.||+|+||||+|+.+++.+.. ..+..++...+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 44567999999999999999999998731 135555555444
No 335
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.79 E-value=0.0013 Score=53.54 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=23.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 48 PFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 48 ~~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
+.+.+|+|++||||||+..+|.-.+.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 45889999999999999999988764
No 336
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.79 E-value=0.00084 Score=57.62 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=29.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCC
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSF 85 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~ 85 (278)
.+.-+.|.||+|+||||+|+.|++.++ ..+..+++..+
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~-~~~~~i~~~~~ 86 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLAN-APFIKVEATKF 86 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT-CCEEEEEGGGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC-CCEEEEcchhc
Confidence 344678999999999999999999985 34566666443
No 337
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.79 E-value=0.00071 Score=63.22 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=28.9
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQR 76 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~ 76 (278)
.+.++.+++|.|++|||||||++.|+....+.+
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G 309 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANK 309 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTT
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCC
Confidence 567889999999999999999999999875443
No 338
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.78 E-value=0.0011 Score=60.67 Aligned_cols=41 Identities=10% Similarity=0.135 Sum_probs=30.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
.++.-|.|.||+|+||||+|++|+..+....+..++..++.
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~ 205 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence 34567899999999999999999999843445666665543
No 339
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.76 E-value=0.00075 Score=60.66 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=25.2
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHH
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQ 70 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~ 70 (278)
...++..++|.|++|||||||.++|.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 567788999999999999999999999
No 340
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.75 E-value=0.00072 Score=59.43 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 023701 51 IGVAGGAASGKTTVCDMIIQQL 72 (278)
Q Consensus 51 I~I~G~sGSGKTTla~~L~~~l 72 (278)
++|.||+|+||||+++.|++.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999954
No 341
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.75 E-value=0.0011 Score=57.55 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=28.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCC
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDS 84 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~ 84 (278)
.+.-|+|+|+||+||||++..|.+. +..++..|.
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~----g~~lv~dD~ 176 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR----GHRLVADDN 176 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT----TCEEEESSE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc----CCceecCCe
Confidence 6788999999999999999999995 556665553
No 342
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.74 E-value=0.0011 Score=58.66 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=26.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCC---CEEEEcC
Q 023701 50 VIGVAGGAASGKTTVCDMIIQQLHDQ---RVVLVNQ 82 (278)
Q Consensus 50 iI~I~G~sGSGKTTla~~L~~~l~~~---~~~~i~~ 82 (278)
.++|+||+|+||||+++.+++.+... .+..+++
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~ 81 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYING 81 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEET
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeC
Confidence 89999999999999999999998643 2344554
No 343
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.73 E-value=0.00089 Score=54.05 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 023701 51 IGVAGGAASGKTTVCDMIIQQL 72 (278)
Q Consensus 51 I~I~G~sGSGKTTla~~L~~~l 72 (278)
+.|.|++|+||||+++.+++.+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999976
No 344
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.72 E-value=0.0011 Score=60.57 Aligned_cols=42 Identities=17% Similarity=0.131 Sum_probs=32.5
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
....++=|.+.||+|+|||++|+++|+.+. ..+..++..++.
T Consensus 239 Gi~pprGILLyGPPGTGKTlLAkAiA~e~~-~~fi~vs~s~L~ 280 (467)
T 4b4t_H 239 GIDPPKGILLYGPPGTGKTLCARAVANRTD-ATFIRVIGSELV 280 (467)
T ss_dssp TCCCCSEEEECSCTTSSHHHHHHHHHHHHT-CEEEEEEGGGGC
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhccC-CCeEEEEhHHhh
Confidence 356777899999999999999999999985 234555555544
No 345
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.72 E-value=0.001 Score=52.23 Aligned_cols=26 Identities=12% Similarity=0.152 Sum_probs=22.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
.+...|+|+|++|||||||.+.|...
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhC
Confidence 44578999999999999999999873
No 346
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.72 E-value=0.0011 Score=51.76 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=23.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
..+...|+|.|.+|||||||.+.|.+.
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 345678999999999999999999884
No 347
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=96.72 E-value=0.0039 Score=57.20 Aligned_cols=95 Identities=12% Similarity=0.126 Sum_probs=53.2
Q ss_pred ccCCCcEEEEcccccCCchHHh--hhcCeEEEEecChhhhhHHhhhccccccCCCHHHHHHHHhhccccccccccccccc
Q 023701 145 RVNPSDVILLEGILVFHDSRVR--ELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKK 222 (278)
Q Consensus 145 ~~~~~~iiiidg~~~~~d~~~~--~~~d~~I~l~~~~e~~l~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 222 (278)
.+..+..+|+|--..+. ..++ ...-+.|||.+|....++++.+|.............+...+ .... +..
T Consensus 277 vl~~Gk~~iLdId~qg~-~~l~~~~~~p~~IFI~PPS~e~L~~~~~rl~~~see~~~r~~~~a~~-~e~~-------~~~ 347 (468)
T 3shw_A 277 IIDQDKHALLDVTPNAV-DRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHK-LRKN-------NHH 347 (468)
T ss_dssp HHTTTCEEEECCCHHHH-HHHHHTTCCCEEEEEECSCHHHHHHHHHHHCTTCCCCHHHHHHHHHH-HHHH-------HGG
T ss_pred HHHCCCeEEEEeCHHHH-HHHHhcCCCCEEEEEeCcCHHHHHHHHhccCCCCHHHHHHHHHHHHH-HHHh-------hhc
Confidence 34566777877644331 2222 22348999999988888765555433333344444433211 1001 246
Q ss_pred cccEEeeCCCCcHHHHHHHHHHHHHh
Q 023701 223 YADIIIPRGGDNHVAIDLIVQHIRTK 248 (278)
Q Consensus 223 ~aD~iI~n~~~~~~~~~~i~~~i~~~ 248 (278)
..|++|.|+...+.+++++.+.|...
T Consensus 348 ~fD~vIvNddl~d~a~~~L~~ii~~~ 373 (468)
T 3shw_A 348 LFTTTINLNSMNDGWYGALKEAIQQQ 373 (468)
T ss_dssp GCSEEEECBTTBCHHHHHHHHHHHHH
T ss_pred cCCEEEECCCcHHHHHHHHHHHHHHh
Confidence 78999988753335667766666643
No 348
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.72 E-value=0.001 Score=60.47 Aligned_cols=31 Identities=23% Similarity=0.189 Sum_probs=26.8
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~ 74 (278)
....+.+++|+||+|||||||..+|...+.+
T Consensus 22 ~~~~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 22 GFGESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp ECTTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 3456788999999999999999999998754
No 349
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.72 E-value=0.0024 Score=53.57 Aligned_cols=40 Identities=30% Similarity=0.383 Sum_probs=32.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhC-CCCEEEEcCCC
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH-DQRVVLVNQDS 84 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~-~~~~~~i~~D~ 84 (278)
..+..+++++|..||||||++..|+..+. +..+.+++.|.
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~ 51 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDT 51 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCS
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 35568999999999999999999997664 23467888875
No 350
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.71 E-value=0.00077 Score=55.00 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=24.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
.++..-+.|.||+|+||||+|.+|++.+.
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34444689999999999999999999985
No 351
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.71 E-value=0.0011 Score=53.97 Aligned_cols=39 Identities=18% Similarity=0.326 Sum_probs=29.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDS 84 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~-~~~~~i~~D~ 84 (278)
.+..+|+|+|.+||||||+++.|...+.. ..+.++..|.
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~ 67 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDV 67 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCC
Confidence 35678999999999999999999987532 2356665553
No 352
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.68 E-value=0.00092 Score=58.21 Aligned_cols=37 Identities=22% Similarity=0.202 Sum_probs=28.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEEcCC
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQLH--DQRVVLVNQD 83 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~l~--~~~~~~i~~D 83 (278)
.+..+.|.||+|+||||+++.+++.+. ...+.+++..
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 345689999999999999999999873 1235555543
No 353
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.67 E-value=0.0015 Score=50.45 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=23.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHH
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~ 70 (278)
..+...|+|.|++|||||||.+.|..
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhc
Confidence 45668899999999999999999976
No 354
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.67 E-value=0.0014 Score=58.18 Aligned_cols=40 Identities=23% Similarity=0.208 Sum_probs=30.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
..+.-|.|.|++|+||||+|+.|+..+. ..+..++..++.
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~-~~~~~i~~~~l~ 154 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSG-ATFFSISASSLT 154 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTT-CEEEEEEGGGGC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC-CeEEEEehHHhh
Confidence 3456789999999999999999999874 235556665544
No 355
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.66 E-value=0.0014 Score=57.11 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=27.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ 82 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~ 82 (278)
..+.-|.|.||+|+|||++|+++++.+. ..+..++.
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~~-~~~~~v~~ 84 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEAN-STFFSVSS 84 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHHT-CEEEEEEH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHC-CCEEEEch
Confidence 3456789999999999999999999975 22444444
No 356
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.66 E-value=0.0011 Score=52.92 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=22.2
Q ss_pred hhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHH
Q 023701 39 SAAENLHRQPFVIGVAGGAASGKTTVCDMIIQ 70 (278)
Q Consensus 39 ~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~ 70 (278)
+..+........|+|.|.+|||||||.+.|.+
T Consensus 8 ~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 8 HHHMGQSKTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp --------CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred cccccCCCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 33334566778899999999999999999876
No 357
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.66 E-value=0.0016 Score=59.01 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=32.4
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
....++=|.+.||+|+|||++|+++|..+. ..+..++..++.
T Consensus 212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~-~~fi~v~~s~l~ 253 (437)
T 4b4t_I 212 GIKPPKGVILYGAPGTGKTLLAKAVANQTS-ATFLRIVGSELI 253 (437)
T ss_dssp TCCCCSEEEEESSTTTTHHHHHHHHHHHHT-CEEEEEESGGGC
T ss_pred CCCCCCCCceECCCCchHHHHHHHHHHHhC-CCEEEEEHHHhh
Confidence 345667799999999999999999999985 234555655544
No 358
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.66 E-value=0.0011 Score=53.17 Aligned_cols=25 Identities=24% Similarity=0.147 Sum_probs=21.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHh
Q 023701 48 PFVIGVAGGAASGKTTVCDMIIQQL 72 (278)
Q Consensus 48 ~~iI~I~G~sGSGKTTla~~L~~~l 72 (278)
+.++.|+|+.||||||++..++..+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999996666654
No 359
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.66 E-value=0.0014 Score=50.23 Aligned_cols=23 Identities=13% Similarity=0.417 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 023701 49 FVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 49 ~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
..|+|.|++|||||||.+.|.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 360
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.65 E-value=0.00079 Score=53.44 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=22.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
.+...|+|+|++|||||||.+.|.+.
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcC
Confidence 44578999999999999999999874
No 361
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.65 E-value=0.0012 Score=51.48 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=23.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
......|+|.|.+|||||||.+.|.+.
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcC
Confidence 445678999999999999999999874
No 362
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.65 E-value=0.00097 Score=54.90 Aligned_cols=26 Identities=15% Similarity=0.312 Sum_probs=23.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
.+...|+|+|.+|+|||||.+.|.+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56789999999999999999999763
No 363
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.65 E-value=0.0011 Score=53.72 Aligned_cols=28 Identities=29% Similarity=0.219 Sum_probs=24.2
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
.......|+|+|.+|+|||||.+.|.+.
T Consensus 22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHhC
Confidence 4455678999999999999999999874
No 364
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.64 E-value=0.0013 Score=50.38 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=21.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 48 PFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 48 ~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
...|+|.|++|||||||.+.|...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 467999999999999999999873
No 365
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.64 E-value=0.0012 Score=52.39 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=23.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
.+...|+|.|++|||||||.+.|.+.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45668999999999999999999984
No 366
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.64 E-value=0.00088 Score=65.83 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=29.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcC
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ 82 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~ 82 (278)
...+.-|+|+||+||||||++++|++.++. .+..++.
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~l~~-~~i~v~~ 271 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANETGA-FFFLING 271 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHTTTC-EEEEEEH
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHcCC-cEEEEEc
Confidence 567788999999999999999999998752 2444554
No 367
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.64 E-value=0.0013 Score=50.62 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=22.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
....|+|.|++|||||||.+.|.+.
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 4567999999999999999999873
No 368
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.63 E-value=0.0013 Score=52.24 Aligned_cols=28 Identities=11% Similarity=0.215 Sum_probs=22.5
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
...+...|+|.|.+|+|||||.+.|.+.
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhC
Confidence 3455678999999999999999999874
No 369
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.63 E-value=0.00098 Score=59.11 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=27.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcC
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ 82 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~ 82 (278)
.+.-|.|.||+|+||||+|+.|++.++ ..+..+++
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~-~~~~~~~~ 84 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLD-VPFTMADA 84 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT-CCEEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC-CCEEEech
Confidence 445689999999999999999999985 23444444
No 370
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.63 E-value=0.0016 Score=57.25 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=20.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHh
Q 023701 48 PFVIGVAGGAASGKTTVCDMIIQQL 72 (278)
Q Consensus 48 ~~iI~I~G~sGSGKTTla~~L~~~l 72 (278)
+.+.+|+||+||||||+..++.-.+
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3577899999999999999886533
No 371
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.62 E-value=0.0013 Score=50.41 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 023701 49 FVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 49 ~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
..|++.|++|||||||.+.|.+.
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56999999999999999999874
No 372
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.62 E-value=0.00085 Score=59.98 Aligned_cols=30 Identities=17% Similarity=0.052 Sum_probs=27.7
Q ss_pred hCCCCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 023701 43 NLHRQPFVIGVAGGAASGKTTVCDMIIQQL 72 (278)
Q Consensus 43 ~~~~~~~iI~I~G~sGSGKTTla~~L~~~l 72 (278)
.++.+|..++|.|++|+|||||++.|++..
T Consensus 169 ~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 169 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 378999999999999999999999999875
No 373
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.62 E-value=0.00093 Score=58.98 Aligned_cols=28 Identities=32% Similarity=0.533 Sum_probs=24.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
..+..++|.|++|+||||+++.+++.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999999873
No 374
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.61 E-value=0.0011 Score=52.79 Aligned_cols=28 Identities=14% Similarity=0.125 Sum_probs=23.8
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
.......|+|+|.+|||||||.+.|.+.
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcC
Confidence 3455678999999999999999999874
No 375
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.61 E-value=0.0011 Score=52.85 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=23.0
Q ss_pred hCCCCCEEEEEEcCCCCcHHHHHHHHHH
Q 023701 43 NLHRQPFVIGVAGGAASGKTTVCDMIIQ 70 (278)
Q Consensus 43 ~~~~~~~iI~I~G~sGSGKTTla~~L~~ 70 (278)
........|+|.|.+|||||||.+.|.+
T Consensus 21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 21 RPADFKLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHCC
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHhc
Confidence 3445567899999999999999999875
No 376
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.60 E-value=0.0015 Score=51.11 Aligned_cols=26 Identities=15% Similarity=0.339 Sum_probs=22.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
.+...|+|+|++|||||||.+.|.+.
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 45678999999999999999999874
No 377
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.60 E-value=0.00058 Score=57.69 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=21.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q 023701 51 IGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 51 I~I~G~sGSGKTTla~~L~~~l~ 73 (278)
+.|.||+|+||||+|+.|++.+.
T Consensus 47 vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHhC
Confidence 78999999999999999999874
No 378
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.60 E-value=0.0015 Score=57.67 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=25.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
..+..+.|.||+|+||||+|+.+++.+.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457899999999999999999999986
No 379
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.59 E-value=0.0013 Score=51.89 Aligned_cols=27 Identities=19% Similarity=0.078 Sum_probs=23.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
......|+|+|++|||||||.+.|.+.
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcC
Confidence 345678999999999999999999873
No 380
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.59 E-value=0.0012 Score=54.56 Aligned_cols=36 Identities=14% Similarity=0.168 Sum_probs=27.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEE
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLV 80 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~~--~~~~~i 80 (278)
..++.++.|+|++||||||++-.++..+.. ..+.++
T Consensus 9 ~~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 9 KKIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp --CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 356889999999999999999988887742 344544
No 381
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.59 E-value=0.001 Score=58.93 Aligned_cols=33 Identities=30% Similarity=0.378 Sum_probs=25.0
Q ss_pred ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 21 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
.+|+++++ ..+ .|+|+|.+|||||||.+.|.+.
T Consensus 25 ~~l~~i~~---------------~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 25 SALPTLWD---------------SLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CCC----C---------------CCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred cccccccc---------------cCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 35778877 555 8999999999999999999994
No 382
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.59 E-value=0.00086 Score=61.50 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=33.3
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhC---CCCEEEEcCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLH---DQRVVLVNQD 83 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~---~~~~~~i~~D 83 (278)
...++.++.|.|++|+|||||+..|+..+. +..+.+++.+
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 688999999999999999999999998763 2346777765
No 383
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.59 E-value=0.0013 Score=52.18 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=22.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
.+...|+|+|.+|||||||++.|.+.
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcC
Confidence 34568999999999999999999874
No 384
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.59 E-value=0.00096 Score=53.95 Aligned_cols=28 Identities=21% Similarity=0.156 Sum_probs=23.8
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
.......|+|.|.+|||||||.+.|.+.
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 21 QSMIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp GGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 3445678999999999999999999874
No 385
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=96.59 E-value=0.0069 Score=58.77 Aligned_cols=128 Identities=16% Similarity=0.208 Sum_probs=60.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCE-EEEcCCCCCCCCCHHHHHHc-cccCCCCCCcccHHHHHHHHHHhhcC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRV-VLVNQDSFYHNLTEQELARV-HEYNFDHPDAFDTEKLLSSMEKLRHG 123 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~-~~i~~D~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~l~~~~~~ 123 (278)
..++.|.|+||+ |+||.+.|...++. .+ ..++... ...+..+.- ..|.|-. ..+.|. ..+..+
T Consensus 529 ~~~r~vvl~GP~---K~tl~~~L~~~~~~-~~~~~vs~TT----R~~r~gE~~G~dY~Fv~----s~~~f~---~~i~~~ 593 (721)
T 2xkx_A 529 HYARPIIILGPT---KDRANDDLLSEFPD-KFGSCVPHTT----RPKREYEIDGRDYHFVS----SREKME---KDIRAH 593 (721)
T ss_pred CCCCEEEEECCC---HHHHHHHHHHhCcc-ceeecccccc----cCCCCCccCCceeEEec----CHHHHH---HHHhcC
Confidence 456788999994 99999999987641 12 1111100 000000000 0122210 122222 233344
Q ss_pred CCccccccCCcCC-cCCCCCccccCCCcEEEEcccccCCchHHh--hhcCeEEEEecChhhhhHHhhhc
Q 023701 124 QAVDIPNYDFKSY-KNNVFPARRVNPSDVILLEGILVFHDSRVR--ELMNMKIFVDTDADVRLARRIRR 189 (278)
Q Consensus 124 ~~i~~~~~~~~~~-~~~~~~~~~~~~~~iiiidg~~~~~d~~~~--~~~d~~I~l~~~~e~~l~R~~~R 189 (278)
..+....+..... .........+..+..+|+|.-.... ..+. ..+-+.|||.++....++++..|
T Consensus 594 ~flE~~~~~g~~YGt~~~~v~~~~~~g~~~ildi~~~~~-~~l~~~~~~p~~ifi~pps~~~L~~l~~R 661 (721)
T 2xkx_A 594 KFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAV-RRLQAAHLHPIAIFIRPRSLENVLEINKR 661 (721)
T ss_pred CceEEEEECCccceeeHHHHHHHHHCCCcEEEeCCHHHH-HHHHhcccCCEEEEEeCCcHHHHHHHhcc
Confidence 4444433322111 1111112234556777887644331 1222 33458999999877777775554
No 386
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.58 E-value=0.0016 Score=59.38 Aligned_cols=33 Identities=18% Similarity=0.201 Sum_probs=26.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcC
Q 023701 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ 82 (278)
Q Consensus 49 ~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~ 82 (278)
.-|.+.||+|+||||+++.|++.++. .+..++.
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l~~-~~~~v~~ 83 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLANA-PFIKVEA 83 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTC-CEEEEEG
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHcCC-Cceeecc
Confidence 44889999999999999999999852 3444554
No 387
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=96.57 E-value=0.01 Score=50.68 Aligned_cols=37 Identities=14% Similarity=0.217 Sum_probs=33.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ 82 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~ 82 (278)
..+.+|++-|.-||||++..+.|.+.++|.++.++..
T Consensus 73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~ 109 (289)
T 3rhf_A 73 PKRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAF 109 (289)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEEC
T ss_pred CCcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEEC
Confidence 3689999999999999999999999999999888754
No 388
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.57 E-value=0.0016 Score=50.04 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 48 PFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 48 ~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
...|+|.|++|||||||.+.|.+.
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 467999999999999999999873
No 389
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.57 E-value=0.0018 Score=57.66 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=28.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCC
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQD 83 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D 83 (278)
.+.-+.|.||+|+||||+|+.|++.++ ..+..+++.
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~-~~~~~~~~~ 106 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLD-IPIAISDAT 106 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT-CCEEEEEGG
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhC-CCEEEecch
Confidence 345688999999999999999999984 235555553
No 390
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.56 E-value=0.001 Score=52.44 Aligned_cols=28 Identities=21% Similarity=0.152 Sum_probs=22.2
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
...+...|+|+|.+|||||||.+.|.+.
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcC
Confidence 4456788999999999999999999874
No 391
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.56 E-value=0.001 Score=52.72 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 023701 49 FVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 49 ~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
..|+|.|++|||||||.+.|.+.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999873
No 392
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.56 E-value=0.0012 Score=54.73 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=22.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
......|+|.|++|||||||.+.|.+.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCC
Confidence 345678999999999999999999874
No 393
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=96.55 E-value=0.0053 Score=55.14 Aligned_cols=93 Identities=12% Similarity=0.132 Sum_probs=52.4
Q ss_pred cCCCcEEEEcccccCCchHHh--hhcCeEEEEecChhhhhHHhhhccccccCCCHHHHHHHHhhcccccccccccccccc
Q 023701 146 VNPSDVILLEGILVFHDSRVR--ELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKY 223 (278)
Q Consensus 146 ~~~~~iiiidg~~~~~d~~~~--~~~d~~I~l~~~~e~~l~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 223 (278)
+..+..+|+|--..+. ..++ ...-+.|||.+|....++++.+|.............+...+ .... +...
T Consensus 286 ~~~Gk~~iLdId~qg~-~~l~~~~~~p~~IFI~PPS~~~L~~~~~r~~~~s~e~~~~~~~~a~~-~e~~-------~~~~ 356 (391)
T 3tsz_A 286 IDQDKHALLDVTPNAV-DRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHK-LRKN-------NHHL 356 (391)
T ss_dssp HTTTCEEEECCCHHHH-HHHHHTTCCCEEEEEECCCHHHHHHHHHHHCSSCCCCHHHHHHHHHH-HHHH-------HGGG
T ss_pred HHcCCEEEEEeCHHHH-HHHHhCCCCCEEEEEeCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHH-HHHh-------cccc
Confidence 4566777777644331 1222 22348999999988888876555432333344444433211 0000 2457
Q ss_pred ccEEeeCCCCcHHHHHHHHHHHHH
Q 023701 224 ADIIIPRGGDNHVAIDLIVQHIRT 247 (278)
Q Consensus 224 aD~iI~n~~~~~~~~~~i~~~i~~ 247 (278)
.|++|.|+.....+++++.+.|..
T Consensus 357 fd~vivNd~l~~~a~~~l~~ii~~ 380 (391)
T 3tsz_A 357 FTTTINLNSMNDGWYGALKEAIQQ 380 (391)
T ss_dssp CSEEEECCTTCCHHHHHHHHHHHH
T ss_pred CcEEEECCCcHHHHHHHHHHHHHH
Confidence 899998875433466666666654
No 394
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.55 E-value=0.0014 Score=51.07 Aligned_cols=27 Identities=33% Similarity=0.475 Sum_probs=23.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
..+...|+|.|++|||||||.+.|.+.
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 456678999999999999999999863
No 395
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.54 E-value=0.0018 Score=52.99 Aligned_cols=38 Identities=24% Similarity=0.417 Sum_probs=28.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQD 83 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~-~~~~~i~~D 83 (278)
.+...|+|+|.+|||||||++.|...+.. .....+..|
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d 74 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGD 74 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECC
Confidence 45688999999999999999999987532 234555544
No 396
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.54 E-value=0.0011 Score=61.79 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=36.1
Q ss_pred eeeeCCcc-ccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 15 GVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 15 ~~~~~~~~-l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
..+..+|. ++++++ ...++ +.+|+|++|||||||..+|.-.+.
T Consensus 42 ~L~i~nf~~~~~~~l---------------~f~~g-~n~i~G~NGaGKS~lleAl~~llg 85 (517)
T 4ad8_A 42 RLEIRNLATITQLEL---------------ELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (517)
T ss_dssp EEEEESBTTBSCEEE---------------ECCCS-EEEEEESHHHHHHHHTHHHHHHTC
T ss_pred eeecccccceeeEEE---------------ecCCC-eEEEEcCCCCCHHHHHHHHHHHhc
Confidence 45666664 788888 77888 899999999999999999988764
No 397
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.54 E-value=0.0014 Score=52.02 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=23.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
......|+|+|.+|||||||.+.|.+.
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcC
Confidence 344578999999999999999999874
No 398
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.54 E-value=0.0015 Score=57.03 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=33.4
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhC--------CCCEEEEcCCCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLH--------DQRVVLVNQDSF 85 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~--------~~~~~~i~~D~~ 85 (278)
-..++.++.|.|++||||||++..|+.... ..++.+++.+.-
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 356788999999999999999999998642 235677877653
No 399
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.53 E-value=0.0021 Score=50.99 Aligned_cols=26 Identities=12% Similarity=0.325 Sum_probs=23.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
.....|+|+|++|||||||.+.|.+.
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 45678999999999999999999985
No 400
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.51 E-value=0.0018 Score=49.81 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHH
Q 023701 48 PFVIGVAGGAASGKTTVCDMIIQ 70 (278)
Q Consensus 48 ~~iI~I~G~sGSGKTTla~~L~~ 70 (278)
...|+|.|.+|||||||.+.|.+
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 45799999999999999999987
No 401
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.51 E-value=0.0015 Score=50.48 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHH
Q 023701 48 PFVIGVAGGAASGKTTVCDMIIQ 70 (278)
Q Consensus 48 ~~iI~I~G~sGSGKTTla~~L~~ 70 (278)
...|+|.|++|||||||.+.|.+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 46799999999999999999986
No 402
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.51 E-value=0.0018 Score=52.26 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=28.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEE
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH--DQRVVLV 80 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~--~~~~~~i 80 (278)
..++.++.++|+.||||||.+-.++.++. ...+.++
T Consensus 5 ~~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~ 42 (191)
T 1xx6_A 5 KDHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF 42 (191)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 45688999999999999999999988873 3344444
No 403
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.50 E-value=0.0014 Score=55.01 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=22.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
..+...|+|+|.+|||||||.+.|.+.
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCC
Confidence 456678999999999999999999863
No 404
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.48 E-value=0.0027 Score=56.86 Aligned_cols=39 Identities=13% Similarity=0.152 Sum_probs=30.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
.+.-|.|.|++|+|||++|+.++..++ ..+..+++..+.
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~-~~~~~v~~~~l~ 185 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESN-ATFFNISAASLT 185 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTT-CEEEEECSCCC-
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhc-CcEEEeeHHHhh
Confidence 356789999999999999999999875 235666665544
No 405
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.48 E-value=0.0021 Score=51.51 Aligned_cols=26 Identities=12% Similarity=0.152 Sum_probs=22.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
.+...|+|.|++|||||||.+.|.+.
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 44578999999999999999999874
No 406
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.48 E-value=0.0017 Score=50.14 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=22.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
.....|+|.|++|||||||.+.|.+.
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 34568999999999999999999874
No 407
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.45 E-value=0.0016 Score=51.81 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
.....|+|+|++|||||||.+.|.+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999999863
No 408
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.45 E-value=0.0017 Score=52.76 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=21.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
..++++.|+|++|||||++|..+...
T Consensus 3 ~~~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 3 AMAEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 45678999999999999999886544
No 409
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.44 E-value=0.0024 Score=50.85 Aligned_cols=26 Identities=15% Similarity=0.342 Sum_probs=23.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHH
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~ 70 (278)
......|+|.|.+|||||||.+.|.+
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHc
Confidence 34567899999999999999999987
No 410
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.44 E-value=0.0012 Score=52.90 Aligned_cols=35 Identities=14% Similarity=0.141 Sum_probs=21.4
Q ss_pred chhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 37 TISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 37 ~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
..+..+....+...|+|.|.+|+|||||.+.|.+.
T Consensus 9 ~~~~~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 9 SGRENLYFQGSKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp -----------CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred CCCCCCcccCcceEEEEECCCCCCHHHHHHHHHhc
Confidence 33334445566778999999999999999977664
No 411
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.44 E-value=0.0019 Score=49.80 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=21.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 48 PFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 48 ~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
...|+|.|++|||||||.+.|.+.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 457999999999999999999873
No 412
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.43 E-value=0.0017 Score=54.78 Aligned_cols=37 Identities=11% Similarity=0.087 Sum_probs=28.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCC--CEEEEcCCC
Q 023701 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDS 84 (278)
Q Consensus 48 ~~iI~I~G~sGSGKTTla~~L~~~l~~~--~~~~i~~D~ 84 (278)
+.-|.|.|++|+|||++|+.|+...... .+..+++..
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGG
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCC
Confidence 3457899999999999999999986532 255565544
No 413
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.43 E-value=0.0021 Score=49.84 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=21.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
+...|+|.|++|+|||||.+.|.+.
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEEEECCCCccHHHHHHHHhcC
Confidence 3467999999999999999999763
No 414
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.43 E-value=0.002 Score=53.33 Aligned_cols=39 Identities=23% Similarity=0.329 Sum_probs=29.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHH--hC-CCCEEEEcCC
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQ--LH-DQRVVLVNQD 83 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~--l~-~~~~~~i~~D 83 (278)
..++.++.|+|++|+||||+|..++-. .. +..+.+++.+
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 577889999999999999999887643 21 2346666665
No 415
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.43 E-value=0.0019 Score=50.87 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
+...|+|.|++|||||||.+.|.+.
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999999874
No 416
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.43 E-value=0.0016 Score=54.53 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=22.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
..+...|+|.|.+|||||||.+.|.+.
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCC
Confidence 355678999999999999999999874
No 417
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.43 E-value=0.0019 Score=52.40 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=23.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQL 72 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l 72 (278)
.+...|+|+|++|||||||.+.|.+..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455679999999999999999999853
No 418
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.42 E-value=0.0027 Score=56.36 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=33.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH--DQRVVLVNQDSFY 86 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~--~~~~~~i~~D~~~ 86 (278)
.+++.++.|.|++||||||||..|+..+. +..+.+++.+.-+
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~ 103 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 103 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 56788999999999999999999987652 3457888886533
No 419
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.42 E-value=0.0018 Score=49.89 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 48 PFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 48 ~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
...|+|.|++|||||||.+.|.+.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999999874
No 420
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.42 E-value=0.0019 Score=50.47 Aligned_cols=26 Identities=12% Similarity=0.219 Sum_probs=22.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
.....|+|.|++|||||||.+.|.+.
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 44568999999999999999999873
No 421
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.42 E-value=0.002 Score=50.29 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=23.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
..+...|+|.|.+|||||||.+.|.+.
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhC
Confidence 345678999999999999999999874
No 422
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.42 E-value=0.0015 Score=57.65 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=24.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQL 72 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l 72 (278)
..+..+.|.||+|+||||+++.+++.+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 556689999999999999999999987
No 423
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.41 E-value=0.0018 Score=50.95 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=23.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
......|+|+|++|||||||.+.|.+.
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcC
Confidence 345578999999999999999999874
No 424
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.41 E-value=0.0018 Score=50.48 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=22.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHH
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~ 70 (278)
......|+|.|++|||||||.+.|.+
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhc
Confidence 34567899999999999999999875
No 425
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.41 E-value=0.0018 Score=50.49 Aligned_cols=26 Identities=15% Similarity=0.337 Sum_probs=22.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
.....|+|.|++|||||||.+.|.+.
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcC
Confidence 34567999999999999999999873
No 426
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.41 E-value=0.0023 Score=49.89 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=22.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
.+...|+|.|++|||||||.+.|.+.
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhC
Confidence 44578999999999999999999864
No 427
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.40 E-value=0.0017 Score=55.07 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 48 PFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 48 ~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
...|+|.|++|||||||.+.|.+.
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999875
No 428
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.40 E-value=0.0017 Score=52.15 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=23.0
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHH
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQ 70 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~ 70 (278)
.......|+|+|.+|||||||.+.|.+
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 21 WSDFLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHh
Confidence 445567899999999999999999975
No 429
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.40 E-value=0.0018 Score=56.63 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=21.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q 023701 51 IGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 51 I~I~G~sGSGKTTla~~L~~~l~ 73 (278)
+.|.||+|+||||+++.|++.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999999863
No 430
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.40 E-value=0.0023 Score=51.21 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=22.2
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
...+...|+|+|++|||||||.+.|.+.
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3456789999999999999999999874
No 431
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.39 E-value=0.0018 Score=57.41 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=23.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
.+.-|.|.||+|+||||+|++|+..+.
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 345588999999999999999999985
No 432
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=96.39 E-value=0.0016 Score=56.53 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=28.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDS 84 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~ 84 (278)
-.+.-|+|+|+||+||||+|-.|..+ |..++..|.
T Consensus 145 ~~g~gvli~G~sG~GKStlal~l~~~----G~~lv~DD~ 179 (312)
T 1knx_A 145 VFGVGVLLTGRSGIGKSECALDLINK----NHLFVGDDA 179 (312)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHTT----TCEEEEEEE
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHc----CCEEEeCCE
Confidence 45677999999999999999998873 566666654
No 433
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.39 E-value=0.0018 Score=59.18 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=22.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHh
Q 023701 48 PFVIGVAGGAASGKTTVCDMIIQQL 72 (278)
Q Consensus 48 ~~iI~I~G~sGSGKTTla~~L~~~l 72 (278)
+.-+.|.||+|+|||||++++++.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999999976
No 434
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.38 E-value=0.0019 Score=49.86 Aligned_cols=25 Identities=12% Similarity=0.330 Sum_probs=22.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
+...|+|.|++|||||||.+.|.+.
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3467999999999999999999874
No 435
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.38 E-value=0.004 Score=54.25 Aligned_cols=42 Identities=21% Similarity=0.238 Sum_probs=33.6
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEEcCCCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLH--DQRVVLVNQDSF 85 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~--~~~~~~i~~D~~ 85 (278)
.+...++|+|+|.-|.||||++--|+-.|- +.++.+++.|..
T Consensus 44 ~i~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq 87 (314)
T 3fwy_A 44 KITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPK 87 (314)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSS
T ss_pred CCCCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 467789999999999999999988888763 467899999963
No 436
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.38 E-value=0.0023 Score=51.27 Aligned_cols=27 Identities=15% Similarity=0.348 Sum_probs=22.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
..+...|+|.|++|||||||.+.|.+.
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcC
Confidence 345678999999999999999999874
No 437
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.38 E-value=0.003 Score=58.79 Aligned_cols=37 Identities=22% Similarity=0.200 Sum_probs=28.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCC
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDS 84 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~ 84 (278)
.+..+.|+||+|+||||+|+.|++.++ ..+..++..+
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~-~~~i~in~s~ 112 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELG-YDILEQNASD 112 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTT-CEEEEECTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC-CCEEEEeCCC
Confidence 346789999999999999999999984 2234444433
No 438
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.38 E-value=0.0025 Score=55.09 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=29.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCC
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSF 85 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~ 85 (278)
.+..+.|.|++|+||||+|+.++..+. ..+..++...+
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~-~~~~~~~~~~~ 74 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELG-VNLRVTSGPAI 74 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHT-CCEEEECTTTC
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhC-CCEEEEecccc
Confidence 445688999999999999999999885 33555665543
No 439
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.37 E-value=0.0017 Score=51.57 Aligned_cols=28 Identities=21% Similarity=0.179 Sum_probs=21.8
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
...+...|+|.|.+|||||||.+.|.+.
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 3456678999999999999999998764
No 440
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.36 E-value=0.0022 Score=51.97 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=22.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
......|+|+|++|||||||.+.|.+.
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcC
Confidence 345678999999999999999999984
No 441
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.36 E-value=0.0021 Score=52.10 Aligned_cols=28 Identities=18% Similarity=0.033 Sum_probs=23.5
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
.......|+|+|.+|||||||.+.|.+.
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 21 DYDYLIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp CCSEEEEEEEESCTTSSHHHHHHHHHCS
T ss_pred CcceeEEEEEECcCCCCHHHHHHHHhcC
Confidence 3445578999999999999999999863
No 442
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.35 E-value=0.022 Score=55.40 Aligned_cols=38 Identities=11% Similarity=0.322 Sum_probs=30.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEEcCCCCCC
Q 023701 50 VIGVAGGAASGKTTVCDMIIQQLH--DQRVVLVNQDSFYH 87 (278)
Q Consensus 50 iI~I~G~sGSGKTTla~~L~~~l~--~~~~~~i~~D~~~~ 87 (278)
.+.|.||+|+|||++|+.|++.+. ...+..+++..+..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME 562 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence 689999999999999999999873 23467777766553
No 443
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.35 E-value=0.0022 Score=50.13 Aligned_cols=26 Identities=19% Similarity=0.100 Sum_probs=22.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
.+...|+|.|.+|+|||||.+.|...
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 45567999999999999999999874
No 444
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.34 E-value=0.0023 Score=50.76 Aligned_cols=26 Identities=15% Similarity=0.195 Sum_probs=22.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
.....|+|.|++|||||||.+.|.+.
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 44578999999999999999999874
No 445
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.34 E-value=0.0015 Score=51.77 Aligned_cols=26 Identities=12% Similarity=0.253 Sum_probs=22.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
.....|+|.|++|||||||.+.|.+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcC
Confidence 44567999999999999999999774
No 446
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.34 E-value=0.0021 Score=50.19 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=22.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
.+...|+|.|.+|+|||||.+.|.+.
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 45578999999999999999999873
No 447
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.34 E-value=0.0022 Score=52.65 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=28.2
Q ss_pred CchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 36 PTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 36 ~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
|-.+.+-....++.+..++|+.||||||.+-.++.++.
T Consensus 16 ~~~~~~~~~~~~G~l~vitG~MgsGKTT~lL~~a~r~~ 53 (214)
T 2j9r_A 16 PRGSHMYLINQNGWIEVICGSMFSGKSEELIRRVRRTQ 53 (214)
T ss_dssp ---CCCCCCCCSCEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred cCCccccccCCCCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 44444333456789999999999999999998888764
No 448
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.32 E-value=0.0022 Score=56.77 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=24.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQL 72 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l 72 (278)
..+..+.|.||+|+||||+++.+++.+
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 445689999999999999999999976
No 449
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.30 E-value=0.0047 Score=53.27 Aligned_cols=42 Identities=21% Similarity=0.238 Sum_probs=33.5
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEEcCCCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLH--DQRVVLVNQDSF 85 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~--~~~~~~i~~D~~ 85 (278)
...++++|+|+|..|+||||++-.|+..+. +..+.+++.|.-
T Consensus 37 ~~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 80 (307)
T 3end_A 37 KITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPK 80 (307)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSS
T ss_pred ccCCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 345778999999999999999999998774 456899999863
No 450
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.30 E-value=0.0025 Score=51.14 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=22.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
.+...|+|.|.+|||||||.+.|.+.
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 45678999999999999999999984
No 451
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.30 E-value=0.0015 Score=56.97 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=23.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
..++.++.|.|++|+||||||..++..
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 456678899999999999999999976
No 452
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.29 E-value=0.0023 Score=50.97 Aligned_cols=26 Identities=15% Similarity=0.336 Sum_probs=22.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
.+...|+|+|++|||||||.+.|.+.
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcC
Confidence 45578999999999999999999874
No 453
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.28 E-value=0.0029 Score=50.95 Aligned_cols=28 Identities=14% Similarity=0.169 Sum_probs=22.1
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
.......|+|+|++|||||||.+.|.+.
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhC
Confidence 3455688999999999999999999863
No 454
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.28 E-value=0.0026 Score=50.44 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
++...|+|+|.+|||||||.+.|.+.
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcC
Confidence 44578999999999999999999873
No 455
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.28 E-value=0.0024 Score=49.15 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 48 PFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 48 ~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
...|+|.|++|||||||.+.|...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 467999999999999999999873
No 456
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.27 E-value=0.0028 Score=51.80 Aligned_cols=25 Identities=16% Similarity=0.351 Sum_probs=21.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHH
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~ 70 (278)
.....|+|.|.+|+|||||.+.|.+
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 4457899999999999999999875
No 457
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.26 E-value=0.0027 Score=50.08 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=22.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
.....|+|.|++|+|||||.+.|.+.
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcC
Confidence 45578999999999999999999874
No 458
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.26 E-value=0.012 Score=57.37 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=30.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023701 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 48 ~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
..-+.|.||+|+|||++|+.|++.++ ..+..+++..+.
T Consensus 488 ~~~~ll~G~~GtGKT~la~~la~~l~-~~~~~i~~s~~~ 525 (758)
T 1r6b_X 488 VGSFLFAGPTGVGKTEVTVQLSKALG-IELLRFDMSEYM 525 (758)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHT-CEEEEEEGGGCS
T ss_pred ceEEEEECCCCCcHHHHHHHHHHHhc-CCEEEEechhhc
Confidence 34789999999999999999999984 345666765544
No 459
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.24 E-value=0.0035 Score=57.40 Aligned_cols=41 Identities=22% Similarity=0.223 Sum_probs=29.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCC
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFY 86 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l~~-~~~~~i~~D~~~ 86 (278)
.++.-+.+.||+|+||||+|+.|++.++. ..+..++...++
T Consensus 61 ~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 61 MAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102 (456)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred CCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence 34456889999999999999999999852 124445544433
No 460
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.24 E-value=0.0019 Score=50.61 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=22.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHH
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~ 70 (278)
.+...|+|.|++|||||||.+.|.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 5678999999999999999988864
No 461
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.24 E-value=0.0027 Score=55.14 Aligned_cols=26 Identities=15% Similarity=0.174 Sum_probs=23.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 48 PFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 48 ~~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
+.-+.|.||+|+|||+|+++|+..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 56788999999999999999999764
No 462
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.24 E-value=0.003 Score=49.83 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=22.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
.+...|+|.|++|||||||.+.|.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999998763
No 463
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.23 E-value=0.0027 Score=50.50 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=23.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
..+...|+|.|.+|+|||||.+.|.+.
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcC
Confidence 345678999999999999999999884
No 464
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.23 E-value=0.0035 Score=49.94 Aligned_cols=26 Identities=15% Similarity=0.303 Sum_probs=22.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
.+...|+|.|.+|||||||.+.|.+.
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 45678999999999999999999874
No 465
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.23 E-value=0.0026 Score=49.51 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 48 PFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 48 ~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
...|+|.|++|||||||.+.|...
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 367999999999999999999863
No 466
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.21 E-value=0.0029 Score=51.39 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=22.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHH
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~ 70 (278)
.+...|+|+|.+|||||||.+.|.+
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC
T ss_pred cceEEEEEECcCCCCHHHHHHHHHc
Confidence 4567899999999999999999985
No 467
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.20 E-value=0.0032 Score=48.56 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 023701 49 FVIGVAGGAASGKTTVCDMIIQ 70 (278)
Q Consensus 49 ~iI~I~G~sGSGKTTla~~L~~ 70 (278)
..|+|.|++|||||||.+.|.+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999975
No 468
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.20 E-value=0.0032 Score=50.28 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=21.4
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
...+...|+|+|.+|+|||||.+.|.+.
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456778999999999999999999863
No 469
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.19 E-value=0.0012 Score=50.45 Aligned_cols=23 Identities=22% Similarity=0.102 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 023701 50 VIGVAGGAASGKTTVCDMIIQQL 72 (278)
Q Consensus 50 iI~I~G~sGSGKTTla~~L~~~l 72 (278)
-|.|.|++|+|||++|+.|+...
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCTT
T ss_pred cEEEECCCCccHHHHHHHHHHhC
Confidence 37899999999999999998865
No 470
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.19 E-value=0.0039 Score=55.47 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=38.4
Q ss_pred CCCchhhhhh--CCCCCEEEEEEcCCCCcHHHHHHHHHHHh--CCCCEEEEcCCCCC
Q 023701 34 GQPTISAAEN--LHRQPFVIGVAGGAASGKTTVCDMIIQQL--HDQRVVLVNQDSFY 86 (278)
Q Consensus 34 ~~~~~~~~~~--~~~~~~iI~I~G~sGSGKTTla~~L~~~l--~~~~~~~i~~D~~~ 86 (278)
+.|..+..-. -.+++.++.|.|++||||||||..|+... .+..+.+++.+.-.
T Consensus 58 G~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~ 114 (366)
T 1xp8_A 58 GSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHAL 114 (366)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred CCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCCh
Confidence 3344444433 34678899999999999999999988764 23468888887543
No 471
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.18 E-value=0.0033 Score=54.67 Aligned_cols=40 Identities=18% Similarity=0.139 Sum_probs=32.3
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEEcCC
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLH--DQRVVLVNQD 83 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~l~--~~~~~~i~~D 83 (278)
-..++.++.|+|++|+|||||+..++...- +..+.+++.+
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 678999999999999999999999987642 2346666665
No 472
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.18 E-value=0.0025 Score=49.01 Aligned_cols=22 Identities=14% Similarity=0.327 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 023701 49 FVIGVAGGAASGKTTVCDMIIQ 70 (278)
Q Consensus 49 ~iI~I~G~sGSGKTTla~~L~~ 70 (278)
..|+|.|++|||||||.+.|.+
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 4689999999999999999864
No 473
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.16 E-value=0.0031 Score=48.40 Aligned_cols=22 Identities=32% Similarity=0.229 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 023701 50 VIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 50 iI~I~G~sGSGKTTla~~L~~~ 71 (278)
.|+|.|++|+|||||.+.|.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 474
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.16 E-value=0.0028 Score=57.96 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 49 FVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 49 ~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
.-+.|.||+|+||||+|+.|++.+.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4689999999999999999999975
No 475
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.15 E-value=0.0026 Score=49.79 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=21.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQ 70 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~ 70 (278)
+...|+|.|.+|||||||.+.|..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 456899999999999999999986
No 476
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.15 E-value=0.0036 Score=49.29 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=22.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHH
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~ 70 (278)
.+...|+|.|++|||||||.+.|.+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 5678899999999999999999876
No 477
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.15 E-value=0.0032 Score=49.32 Aligned_cols=25 Identities=28% Similarity=0.219 Sum_probs=21.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
+...|+|.|.+|||||||.+.|...
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcC
Confidence 3467999999999999999999863
No 478
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=96.13 E-value=0.0063 Score=51.19 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=32.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 023701 48 PFVIGVAGGAASGKTTVCDMIIQQLH--DQRVVLVNQDSFY 86 (278)
Q Consensus 48 ~~iI~I~G~sGSGKTTla~~L~~~l~--~~~~~~i~~D~~~ 86 (278)
+++|+|+|..|+||||++-.|+..+. +..+.+++.|.-.
T Consensus 1 M~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~ 41 (269)
T 1cp2_A 1 MRQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKA 41 (269)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTS
T ss_pred CcEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCC
Confidence 36788899999999999999999874 3468899998643
No 479
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.13 E-value=0.0035 Score=49.55 Aligned_cols=27 Identities=33% Similarity=0.300 Sum_probs=23.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQL 72 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l 72 (278)
.....|+|.|.+|||||||.+.|.+.+
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhc
Confidence 345689999999999999999998865
No 480
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.12 E-value=0.0032 Score=56.04 Aligned_cols=23 Identities=17% Similarity=0.442 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 023701 49 FVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 49 ~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
.+.+|+|++||||||+..+|.=.
T Consensus 26 gl~vi~G~NGaGKT~ileAI~~~ 48 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVFFA 48 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67899999999999999999863
No 481
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.12 E-value=0.0038 Score=49.28 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=23.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHH
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~ 70 (278)
..+...|+|.|.+|||||||.+.|.+
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhc
Confidence 35678899999999999999999986
No 482
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.11 E-value=0.0035 Score=54.59 Aligned_cols=33 Identities=12% Similarity=0.015 Sum_probs=25.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcC
Q 023701 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ 82 (278)
Q Consensus 49 ~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~ 82 (278)
.-+.|.||+|+|||++++.|++.++. .+..++.
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~-~~~~i~~ 79 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDL-DFHRIQF 79 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTC-CEEEEEC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCC-CeEEEec
Confidence 35889999999999999999998853 2444443
No 483
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=96.05 E-value=0.0043 Score=51.37 Aligned_cols=35 Identities=31% Similarity=0.485 Sum_probs=30.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEcCCC
Q 023701 50 VIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDS 84 (278)
Q Consensus 50 iI~I~G~sGSGKTTla~~L~~~l~~--~~~~~i~~D~ 84 (278)
.|+|+|..|+||||++-.|+..+.. ..+.+++.|.
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4777999999999999999998853 4678899986
No 484
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.03 E-value=0.0034 Score=53.52 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 48 PFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 48 ~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
...|+|.|.+|||||||.+.|.+.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 467999999999999999999874
No 485
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.03 E-value=0.0046 Score=50.28 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=22.1
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
.......|+|.|.+|+|||||.+.|.+.
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcC
Confidence 3445678999999999999999999874
No 486
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.02 E-value=0.0035 Score=55.25 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=23.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023701 47 QPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 47 ~~~iI~I~G~sGSGKTTla~~L~~~l~ 73 (278)
.+..+.|.|++|+||||+++.+++.+.
T Consensus 37 ~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 37 IHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345789999999999999999999874
No 487
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.02 E-value=0.0031 Score=56.51 Aligned_cols=36 Identities=14% Similarity=0.264 Sum_probs=26.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEcCC
Q 023701 48 PFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQD 83 (278)
Q Consensus 48 ~~iI~I~G~sGSGKTTla~~L~~~l~~--~~~~~i~~D 83 (278)
..-++|+|++||||||+++.|...+.. ..+.+++.+
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 345789999999999999999987532 234555543
No 488
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.02 E-value=0.0021 Score=56.15 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=21.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q 023701 51 IGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 51 I~I~G~sGSGKTTla~~L~~~l~ 73 (278)
+.|.|++|+|||++|+.|+..+.
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 89999999999999999999875
No 489
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.01 E-value=0.0037 Score=50.17 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=22.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
.....|+|+|.+|||||||.+.|.+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhC
Confidence 34568999999999999999999874
No 490
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.01 E-value=0.0033 Score=54.55 Aligned_cols=28 Identities=18% Similarity=0.309 Sum_probs=23.5
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
+.+++-.|+|+|.+|||||||.+.|.+.
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3455668999999999999999999874
No 491
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=96.00 E-value=0.0082 Score=51.21 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=32.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 023701 48 PFVIGVAGGAASGKTTVCDMIIQQLH--DQRVVLVNQDSFY 86 (278)
Q Consensus 48 ~~iI~I~G~sGSGKTTla~~L~~~l~--~~~~~~i~~D~~~ 86 (278)
+++|+|+|..|+||||++-.|+..+. +..+.+++.|.-.
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~ 42 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKA 42 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 47888999999999999999998873 4568899998643
No 492
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.99 E-value=0.0032 Score=54.83 Aligned_cols=38 Identities=18% Similarity=0.114 Sum_probs=29.0
Q ss_pred CCCchhhhhh-CCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 34 GQPTISAAEN-LHRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 34 ~~~~~~~~~~-~~~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
+.|..+..-. -.+++.++.|.|++||||||++..|+..
T Consensus 83 G~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 83 SSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3344444431 4577899999999999999999999975
No 493
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.99 E-value=0.0034 Score=50.27 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=21.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHH
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~ 70 (278)
.....|+|.|.+|||||||.+.|.+
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHh
Confidence 4557899999999999999999864
No 494
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.99 E-value=0.0038 Score=50.44 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=21.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
.+...|+|.|++|||||||.+.|.+.
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567999999999999999999874
No 495
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.98 E-value=0.0041 Score=53.59 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=21.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q 023701 51 IGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 51 I~I~G~sGSGKTTla~~L~~~l~ 73 (278)
+.|.||+|+||||+++.+++.+.
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhc
Confidence 89999999999999999999863
No 496
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.98 E-value=0.002 Score=63.38 Aligned_cols=40 Identities=13% Similarity=0.157 Sum_probs=30.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCC
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSF 85 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~D~~ 85 (278)
..++..++|.||+|+||||+|++|++.+. ..+..++..++
T Consensus 508 ~~~~~~vLL~GppGtGKT~Lakala~~~~-~~~i~v~~~~l 547 (806)
T 1ypw_A 508 MTPSKGVLFYGPPGCGKTLLAKAIANECQ-ANFISIKGPEL 547 (806)
T ss_dssp CCCCCCCCCBCCTTSSHHHHHHHHHHHHT-CCCCCCCCSSS
T ss_pred CCCCceeEEECCCCCCHHHHHHHHHHHhC-CCEEEEechHh
Confidence 45677799999999999999999999985 23444555443
No 497
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.98 E-value=0.0042 Score=49.92 Aligned_cols=27 Identities=26% Similarity=0.259 Sum_probs=23.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
......|+|.|.+|+|||||.+.|...
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhC
Confidence 344578999999999999999999873
No 498
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.96 E-value=0.0026 Score=50.55 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=23.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQL 72 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~l 72 (278)
.....|+|.|.+|||||||.+.|.+.-
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 455789999999999999999999854
No 499
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.96 E-value=0.0041 Score=53.92 Aligned_cols=37 Identities=24% Similarity=0.416 Sum_probs=28.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcC
Q 023701 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ 82 (278)
Q Consensus 45 ~~~~~iI~I~G~sGSGKTTla~~L~~~l~~~~~~~i~~ 82 (278)
...+..+.+.||+|+||||+++.|++.+. ..+..++.
T Consensus 45 ~~~~~~~L~~G~~G~GKT~la~~la~~l~-~~~~~i~~ 81 (324)
T 3u61_B 45 GKIPHIILHSPSPGTGKTTVAKALCHDVN-ADMMFVNG 81 (324)
T ss_dssp TCCCSEEEECSSTTSSHHHHHHHHHHHTT-EEEEEEET
T ss_pred CCCCeEEEeeCcCCCCHHHHHHHHHHHhC-CCEEEEcc
Confidence 34456788999999999999999999884 22344444
No 500
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.95 E-value=0.0043 Score=49.81 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=22.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023701 46 RQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 46 ~~~~iI~I~G~sGSGKTTla~~L~~~ 71 (278)
.....|+|.|++|||||||.+.|.+.
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC
Confidence 44578999999999999999999874
Done!