Query 023703
Match_columns 278
No_of_seqs 320 out of 3408
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 06:01:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023703.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023703hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1271 Methyltransferases [Ge 100.0 4E-37 8.7E-42 232.2 18.0 216 20-278 8-227 (227)
2 PF01209 Ubie_methyltran: ubiE 99.9 4.8E-21 1E-25 157.2 10.8 146 96-252 44-192 (233)
3 COG2226 UbiE Methylase involve 99.8 2.2E-20 4.7E-25 151.9 10.2 143 99-252 51-196 (238)
4 COG2227 UbiG 2-polyprenyl-3-me 99.8 1.2E-19 2.7E-24 145.0 9.3 113 98-219 58-171 (243)
5 PF12847 Methyltransf_18: Meth 99.8 8.8E-19 1.9E-23 128.2 11.7 108 99-210 1-112 (112)
6 PF13847 Methyltransf_31: Meth 99.8 4.2E-18 9.2E-23 131.6 12.2 107 98-211 2-112 (152)
7 PRK11207 tellurite resistance 99.8 4.8E-18 1E-22 136.7 12.9 106 98-209 29-134 (197)
8 TIGR03840 TMPT_Se_Te thiopurin 99.7 1.6E-17 3.4E-22 134.7 12.5 107 99-211 34-154 (213)
9 PLN02233 ubiquinone biosynthes 99.7 3.3E-17 7.2E-22 137.4 14.2 122 97-225 71-198 (261)
10 PF05175 MTS: Methyltransferas 99.7 1.2E-17 2.5E-22 131.4 10.6 121 90-213 23-144 (170)
11 PF03848 TehB: Tellurite resis 99.7 2.7E-17 5.9E-22 129.7 11.9 106 98-210 29-134 (192)
12 PLN02396 hexaprenyldihydroxybe 99.7 3.3E-17 7.1E-22 140.3 12.9 110 98-215 130-241 (322)
13 PRK00107 gidB 16S rRNA methylt 99.7 5.1E-17 1.1E-21 128.9 13.1 111 98-219 44-155 (187)
14 TIGR00477 tehB tellurite resis 99.7 3.9E-17 8.5E-22 131.2 12.6 104 99-209 30-133 (195)
15 PF08241 Methyltransf_11: Meth 99.7 1.9E-17 4E-22 117.2 9.4 94 104-207 1-95 (95)
16 TIGR03533 L3_gln_methyl protei 99.7 9.3E-17 2E-21 136.1 14.5 166 55-222 74-263 (284)
17 PRK14966 unknown domain/N5-glu 99.7 9.5E-17 2.1E-21 140.0 13.8 167 52-223 204-395 (423)
18 TIGR00138 gidB 16S rRNA methyl 99.7 1.3E-16 2.9E-21 126.3 13.2 114 99-223 42-156 (181)
19 PRK13255 thiopurine S-methyltr 99.7 1.9E-16 4.1E-21 128.9 13.5 104 99-208 37-154 (218)
20 PRK11036 putative S-adenosyl-L 99.7 1.1E-16 2.4E-21 134.1 12.5 108 99-214 44-154 (255)
21 TIGR02752 MenG_heptapren 2-hep 99.7 2.4E-16 5.3E-21 130.2 13.9 111 97-214 43-156 (231)
22 PLN02244 tocopherol O-methyltr 99.7 1.7E-16 3.6E-21 138.1 13.4 106 98-210 117-224 (340)
23 COG2230 Cfa Cyclopropane fatty 99.7 6.7E-17 1.5E-21 133.8 10.4 115 94-215 67-182 (283)
24 PF02353 CMAS: Mycolic acid cy 99.7 5.6E-17 1.2E-21 136.1 10.0 113 95-215 58-172 (273)
25 KOG1540 Ubiquinone biosynthesi 99.7 2.3E-16 5E-21 126.3 12.4 150 98-258 99-260 (296)
26 PRK12335 tellurite resistance 99.7 4.3E-16 9.2E-21 132.7 15.0 104 99-209 120-223 (287)
27 TIGR00536 hemK_fam HemK family 99.7 3.7E-16 8E-21 132.8 14.3 170 52-222 64-257 (284)
28 PF06325 PrmA: Ribosomal prote 99.7 1.2E-16 2.7E-21 134.6 10.8 171 30-216 94-266 (295)
29 COG2890 HemK Methylase of poly 99.7 3.5E-16 7.5E-21 131.9 13.4 167 55-223 65-252 (280)
30 PRK11805 N5-glutamine S-adenos 99.7 6.2E-16 1.4E-20 132.3 15.1 164 55-220 86-273 (307)
31 PRK01544 bifunctional N5-gluta 99.7 3.4E-16 7.3E-21 142.4 14.1 171 52-223 65-283 (506)
32 KOG1270 Methyltransferases [Co 99.7 3.9E-17 8.5E-22 131.5 7.0 110 100-219 90-205 (282)
33 PRK13256 thiopurine S-methyltr 99.7 9.3E-16 2E-20 124.3 13.9 107 99-211 43-165 (226)
34 TIGR03704 PrmC_rel_meth putati 99.7 9.1E-16 2E-20 127.8 14.1 165 54-223 38-230 (251)
35 COG2264 PrmA Ribosomal protein 99.7 3.9E-16 8.4E-21 130.3 11.4 139 70-218 131-272 (300)
36 PF05401 NodS: Nodulation prot 99.7 2.6E-16 5.5E-21 122.7 9.5 105 99-210 43-147 (201)
37 PRK14103 trans-aconitate 2-met 99.7 3.6E-16 7.9E-21 131.0 11.2 100 98-211 28-128 (255)
38 PRK15451 tRNA cmo(5)U34 methyl 99.7 9.7E-16 2.1E-20 127.7 12.9 106 98-209 55-164 (247)
39 PRK01683 trans-aconitate 2-met 99.7 1E-15 2.2E-20 128.6 12.8 102 98-211 30-132 (258)
40 PRK15068 tRNA mo(5)U34 methylt 99.7 9.7E-16 2.1E-20 132.0 12.7 105 98-209 121-226 (322)
41 TIGR00537 hemK_rel_arch HemK-r 99.7 2.9E-15 6.2E-20 118.9 14.3 123 98-223 18-155 (179)
42 COG4106 Tam Trans-aconitate me 99.7 2.5E-16 5.3E-21 123.2 7.8 112 98-221 29-141 (257)
43 PRK14967 putative methyltransf 99.7 2.8E-15 6.1E-20 123.1 14.5 125 97-222 34-173 (223)
44 PF13649 Methyltransf_25: Meth 99.7 4.4E-16 9.5E-21 111.8 8.5 95 103-203 1-101 (101)
45 PF13659 Methyltransf_26: Meth 99.7 3.8E-16 8.2E-21 115.2 8.2 112 100-211 1-117 (117)
46 COG4123 Predicted O-methyltran 99.7 1.4E-15 3.1E-20 123.7 11.7 134 90-223 35-184 (248)
47 TIGR00452 methyltransferase, p 99.6 1.5E-15 3.2E-20 129.6 12.2 107 97-210 119-226 (314)
48 PRK15001 SAM-dependent 23S rib 99.6 2.9E-15 6.4E-20 130.6 14.2 108 100-209 229-340 (378)
49 TIGR00406 prmA ribosomal prote 99.6 3.9E-15 8.4E-20 126.7 14.1 131 72-213 130-263 (288)
50 PRK00517 prmA ribosomal protei 99.6 2.5E-15 5.3E-20 125.5 12.6 108 89-213 108-217 (250)
51 PTZ00098 phosphoethanolamine N 99.6 2.4E-15 5.2E-20 126.3 12.4 109 96-211 49-158 (263)
52 PF05724 TPMT: Thiopurine S-me 99.6 1.5E-15 3.3E-20 123.3 10.7 105 98-208 36-154 (218)
53 PRK10258 biotin biosynthesis p 99.6 2.4E-15 5.1E-20 125.9 12.1 101 99-212 42-143 (251)
54 smart00828 PKS_MT Methyltransf 99.6 2.3E-15 4.9E-20 123.9 11.4 104 101-211 1-106 (224)
55 PRK11873 arsM arsenite S-adeno 99.6 3.8E-15 8.2E-20 126.1 12.7 108 96-210 74-184 (272)
56 TIGR02469 CbiT precorrin-6Y C5 99.6 7.3E-15 1.6E-19 109.2 12.6 103 98-210 18-123 (124)
57 TIGR03534 RF_mod_PrmC protein- 99.6 8.6E-15 1.9E-19 122.4 14.3 125 99-223 87-231 (251)
58 TIGR00740 methyltransferase, p 99.6 7E-15 1.5E-19 122.1 13.6 108 98-211 52-163 (239)
59 PRK08287 cobalt-precorrin-6Y C 99.6 8.9E-15 1.9E-19 116.9 13.6 117 96-223 28-146 (187)
60 PRK00121 trmB tRNA (guanine-N( 99.6 5.3E-15 1.1E-19 119.5 11.7 124 99-222 40-170 (202)
61 PF08242 Methyltransf_12: Meth 99.6 6.1E-17 1.3E-21 115.8 0.3 95 104-205 1-99 (99)
62 PLN02336 phosphoethanolamine N 99.6 6E-15 1.3E-19 134.4 13.4 107 97-211 264-371 (475)
63 PRK09328 N5-glutamine S-adenos 99.6 1.6E-14 3.5E-19 122.5 14.5 148 73-222 81-251 (275)
64 PRK13942 protein-L-isoaspartat 99.6 1.7E-14 3.6E-19 117.4 13.4 101 96-209 73-176 (212)
65 PRK05785 hypothetical protein; 99.6 3.6E-15 7.7E-20 122.4 9.1 139 99-258 51-191 (226)
66 PRK13944 protein-L-isoaspartat 99.6 2E-14 4.4E-19 116.4 12.7 101 97-210 70-174 (205)
67 PRK09489 rsmC 16S ribosomal RN 99.6 2.6E-14 5.6E-19 123.9 14.1 108 100-211 197-305 (342)
68 COG2813 RsmC 16S RNA G1207 met 99.6 2.1E-14 4.6E-19 119.3 12.9 109 99-210 158-267 (300)
69 TIGR00080 pimt protein-L-isoas 99.6 1.6E-14 3.4E-19 118.0 12.0 102 96-210 74-178 (215)
70 PF13489 Methyltransf_23: Meth 99.6 8.9E-15 1.9E-19 113.8 10.0 99 97-213 20-119 (161)
71 PRK14903 16S rRNA methyltransf 99.6 3E-14 6.6E-19 127.4 14.6 142 87-228 225-385 (431)
72 COG2518 Pcm Protein-L-isoaspar 99.6 3.8E-14 8.3E-19 112.1 13.4 110 89-212 62-172 (209)
73 TIGR00091 tRNA (guanine-N(7)-) 99.6 4.6E-14 1E-18 113.3 14.2 124 99-222 16-146 (194)
74 KOG2904 Predicted methyltransf 99.6 2.6E-14 5.7E-19 115.7 12.5 158 55-212 99-288 (328)
75 TIGR03587 Pse_Me-ase pseudamin 99.6 2.4E-14 5.3E-19 115.5 12.0 103 96-210 40-143 (204)
76 PRK14968 putative methyltransf 99.6 8.8E-14 1.9E-18 111.1 14.7 124 98-222 22-162 (188)
77 TIGR01177 conserved hypothetic 99.6 4.8E-14 1E-18 122.4 13.8 118 95-213 178-298 (329)
78 PRK14904 16S rRNA methyltransf 99.6 6E-14 1.3E-18 126.4 14.7 135 93-227 244-395 (445)
79 PRK11705 cyclopropane fatty ac 99.6 2.9E-14 6.3E-19 125.6 12.3 106 96-212 164-270 (383)
80 TIGR00446 nop2p NOL1/NOP2/sun 99.6 6.2E-14 1.3E-18 117.9 13.6 141 85-225 57-215 (264)
81 PLN02490 MPBQ/MSBQ methyltrans 99.6 2.9E-14 6.4E-19 122.6 11.8 104 98-211 112-217 (340)
82 PRK15128 23S rRNA m(5)C1962 me 99.6 5.7E-14 1.2E-18 123.9 12.8 125 98-222 219-354 (396)
83 PF08003 Methyltransf_9: Prote 99.5 3.5E-14 7.5E-19 117.9 10.6 106 98-210 114-220 (315)
84 PRK06922 hypothetical protein; 99.5 5E-14 1.1E-18 128.5 12.4 112 98-210 417-538 (677)
85 TIGR02021 BchM-ChlM magnesium 99.5 7.5E-14 1.6E-18 114.4 12.1 104 97-208 53-157 (219)
86 TIGR02072 BioC biotin biosynth 99.5 8.6E-14 1.9E-18 115.4 12.4 105 99-214 34-140 (240)
87 PRK00312 pcm protein-L-isoaspa 99.5 9.9E-14 2.2E-18 113.1 12.2 102 95-210 74-176 (212)
88 PRK14901 16S rRNA methyltransf 99.5 1.3E-13 2.9E-18 123.8 14.1 135 94-228 247-403 (434)
89 PRK14902 16S rRNA methyltransf 99.5 1.6E-13 3.5E-18 123.8 14.4 132 94-225 245-395 (444)
90 KOG4300 Predicted methyltransf 99.5 6.8E-14 1.5E-18 108.8 9.7 107 101-214 78-187 (252)
91 PRK08317 hypothetical protein; 99.5 1.8E-13 3.9E-18 113.4 13.1 107 97-211 17-126 (241)
92 PLN03075 nicotianamine synthas 99.5 3.7E-13 8.1E-18 112.9 14.5 106 99-210 123-234 (296)
93 PRK10901 16S rRNA methyltransf 99.5 2.2E-13 4.7E-18 122.2 14.0 133 94-227 239-390 (427)
94 PRK10909 rsmD 16S rRNA m(2)G96 99.5 1.5E-13 3.2E-18 110.0 11.3 114 90-211 44-161 (199)
95 PRK05134 bifunctional 3-demeth 99.5 2.1E-13 4.5E-18 112.9 12.6 108 97-213 46-155 (233)
96 PRK00377 cbiT cobalt-precorrin 99.5 2.3E-13 5E-18 109.7 12.3 105 96-210 37-146 (198)
97 PLN02672 methionine S-methyltr 99.5 2.3E-13 5E-18 131.4 14.3 184 65-252 84-332 (1082)
98 PRK07402 precorrin-6B methylas 99.5 2.3E-13 4.9E-18 109.6 12.0 106 96-212 37-145 (196)
99 PRK00216 ubiE ubiquinone/menaq 99.5 3.5E-13 7.5E-18 111.8 13.2 108 99-213 51-162 (239)
100 TIGR01983 UbiG ubiquinone bios 99.5 3.3E-13 7.2E-18 110.9 12.9 108 99-214 45-154 (224)
101 PRK11783 rlmL 23S rRNA m(2)G24 99.5 1.8E-13 3.9E-18 129.5 12.4 142 73-219 517-666 (702)
102 PRK04266 fibrillarin; Provisio 99.5 6.8E-13 1.5E-17 108.5 14.1 103 95-208 68-175 (226)
103 smart00138 MeTrc Methyltransfe 99.5 1.3E-13 2.9E-18 115.7 10.1 107 99-210 99-243 (264)
104 TIGR00563 rsmB ribosomal RNA s 99.5 4.4E-13 9.5E-18 120.3 14.0 138 91-228 230-387 (426)
105 COG2242 CobL Precorrin-6B meth 99.5 4.1E-13 8.8E-18 104.0 11.9 108 94-212 29-138 (187)
106 KOG2361 Predicted methyltransf 99.5 8.8E-14 1.9E-18 110.9 8.2 152 27-218 33-192 (264)
107 COG1092 Predicted SAM-dependen 99.5 1.5E-13 3.2E-18 119.7 10.4 136 72-214 195-341 (393)
108 TIGR01934 MenG_MenH_UbiE ubiqu 99.5 4.9E-13 1.1E-17 109.7 12.8 106 99-213 39-147 (223)
109 PF01135 PCMT: Protein-L-isoas 99.5 2.7E-13 5.9E-18 109.3 10.2 103 96-211 69-174 (209)
110 PF10672 Methyltrans_SAM: S-ad 99.5 2.1E-13 4.5E-18 114.4 9.0 136 72-214 101-243 (286)
111 PLN02585 magnesium protoporphy 99.5 1.5E-12 3.3E-17 111.4 14.2 101 99-208 144-249 (315)
112 PRK14121 tRNA (guanine-N(7)-)- 99.5 8.6E-13 1.9E-17 114.7 12.7 115 99-214 122-240 (390)
113 PRK11088 rrmA 23S rRNA methylt 99.5 6.9E-13 1.5E-17 112.2 11.8 97 99-214 85-186 (272)
114 TIGR02716 C20_methyl_CrtF C-20 99.5 1E-12 2.2E-17 113.2 12.9 108 96-210 146-255 (306)
115 PHA03412 putative methyltransf 99.4 7.4E-13 1.6E-17 107.1 10.4 101 99-204 49-158 (241)
116 PHA03411 putative methyltransf 99.4 9.7E-13 2.1E-17 108.8 11.0 106 99-209 64-183 (279)
117 PLN02336 phosphoethanolamine N 99.4 9E-13 1.9E-17 120.2 12.0 104 98-209 36-142 (475)
118 PLN02781 Probable caffeoyl-CoA 99.4 9.6E-13 2.1E-17 108.5 10.9 112 88-209 57-178 (234)
119 PRK11188 rrmJ 23S rRNA methylt 99.4 1.9E-12 4E-17 105.0 11.9 113 98-222 50-179 (209)
120 cd02440 AdoMet_MTases S-adenos 99.4 2.8E-12 6.1E-17 91.4 11.4 101 102-208 1-103 (107)
121 PRK07580 Mg-protoporphyrin IX 99.4 2.7E-12 5.9E-17 105.9 12.2 99 98-204 62-161 (230)
122 TIGR00095 RNA methyltransferas 99.4 2.3E-12 5E-17 102.7 11.1 121 85-211 35-161 (189)
123 PF03602 Cons_hypoth95: Conser 99.4 5.2E-13 1.1E-17 105.6 7.2 128 78-212 20-156 (183)
124 PRK13943 protein-L-isoaspartat 99.4 2.7E-12 5.9E-17 110.1 11.5 101 96-209 77-180 (322)
125 COG1041 Predicted DNA modifica 99.4 3E-12 6.4E-17 108.5 11.4 132 84-216 182-317 (347)
126 PRK03522 rumB 23S rRNA methylu 99.4 9.2E-12 2E-16 107.4 14.7 111 99-220 173-285 (315)
127 PRK04457 spermidine synthase; 99.4 1.9E-12 4E-17 108.6 10.0 112 97-211 64-179 (262)
128 COG2263 Predicted RNA methylas 99.4 2E-11 4.4E-16 94.3 14.8 84 95-181 41-124 (198)
129 TIGR03438 probable methyltrans 99.4 5E-12 1.1E-16 108.3 12.7 107 98-209 62-177 (301)
130 PRK13168 rumA 23S rRNA m(5)U19 99.4 1.3E-11 2.9E-16 111.3 15.9 113 97-221 295-412 (443)
131 PRK06202 hypothetical protein; 99.4 6.5E-12 1.4E-16 103.8 12.3 106 98-213 59-170 (232)
132 COG2519 GCD14 tRNA(1-methylade 99.4 1.1E-11 2.3E-16 100.5 12.5 120 93-224 88-211 (256)
133 PTZ00146 fibrillarin; Provisio 99.4 4.1E-11 8.9E-16 100.3 16.3 101 97-208 130-236 (293)
134 PF07021 MetW: Methionine bios 99.4 3.3E-12 7.3E-17 99.6 9.2 100 98-214 12-114 (193)
135 PRK00811 spermidine synthase; 99.4 6E-12 1.3E-16 106.7 11.6 109 99-210 76-192 (283)
136 TIGR02085 meth_trns_rumB 23S r 99.4 1.1E-11 2.4E-16 109.3 13.6 138 73-221 204-346 (374)
137 TIGR00438 rrmJ cell division p 99.4 7.4E-12 1.6E-16 100.1 10.7 115 95-220 28-158 (188)
138 smart00650 rADc Ribosomal RNA 99.3 3.9E-11 8.4E-16 94.3 13.6 100 98-208 12-112 (169)
139 TIGR02081 metW methionine bios 99.3 7.7E-12 1.7E-16 100.5 9.5 97 98-211 12-111 (194)
140 PF03291 Pox_MCEL: mRNA cappin 99.3 1.4E-11 3.1E-16 106.1 10.4 112 99-213 62-190 (331)
141 KOG1541 Predicted protein carb 99.3 2.8E-11 6E-16 95.3 11.0 115 99-219 50-170 (270)
142 PF01170 UPF0020: Putative RNA 99.3 1.3E-11 2.9E-16 97.5 9.4 131 85-216 14-157 (179)
143 PLN02476 O-methyltransferase 99.3 2.5E-11 5.4E-16 101.4 10.9 117 84-210 103-229 (278)
144 PF01596 Methyltransf_3: O-met 99.3 1.2E-11 2.7E-16 99.4 8.0 116 85-210 31-156 (205)
145 COG0742 N6-adenine-specific me 99.3 1.1E-10 2.4E-15 91.1 12.7 129 78-212 21-157 (187)
146 COG4122 Predicted O-methyltran 99.3 4.7E-11 1E-15 96.0 10.3 116 85-210 45-167 (219)
147 PRK11933 yebU rRNA (cytosine-C 99.2 1.7E-10 3.6E-15 103.7 14.1 142 85-226 97-259 (470)
148 PRK05031 tRNA (uracil-5-)-meth 99.2 1.4E-10 3.1E-15 101.7 13.1 75 101-176 208-299 (362)
149 TIGR00479 rumA 23S rRNA (uraci 99.2 9.5E-11 2.1E-15 105.6 12.2 102 97-209 290-396 (431)
150 PLN02232 ubiquinone biosynthes 99.2 2.2E-11 4.7E-16 94.7 6.9 94 126-226 1-98 (160)
151 PLN02366 spermidine synthase 99.2 1.1E-10 2.4E-15 99.6 11.6 109 98-209 90-206 (308)
152 PRK01581 speE spermidine synth 99.2 2.6E-10 5.6E-15 98.1 13.2 113 98-212 149-271 (374)
153 TIGR00417 speE spermidine synt 99.2 1.2E-10 2.7E-15 98.3 11.1 110 99-211 72-188 (270)
154 TIGR02143 trmA_only tRNA (urac 99.2 1.7E-10 3.6E-15 100.9 12.2 108 101-221 199-323 (353)
155 KOG2899 Predicted methyltransf 99.2 1.5E-10 3.2E-15 92.5 10.5 116 98-215 57-215 (288)
156 PF02390 Methyltransf_4: Putat 99.2 2.5E-11 5.4E-16 97.2 5.9 112 102-213 20-137 (195)
157 PRK03612 spermidine synthase; 99.2 1.1E-10 2.3E-15 107.2 9.7 111 98-210 296-416 (521)
158 PF10294 Methyltransf_16: Puta 99.2 3.5E-10 7.5E-15 89.0 10.6 107 98-212 44-159 (173)
159 KOG1975 mRNA cap methyltransfe 99.2 1.5E-10 3.3E-15 96.1 8.8 122 98-224 116-250 (389)
160 PF08704 GCD14: tRNA methyltra 99.2 2.3E-10 5E-15 94.3 9.9 110 93-214 34-151 (247)
161 KOG1499 Protein arginine N-met 99.2 1.2E-10 2.5E-15 98.5 8.2 107 97-208 58-166 (346)
162 PLN02589 caffeoyl-CoA O-methyl 99.2 2.2E-10 4.8E-15 94.6 9.4 115 85-209 65-190 (247)
163 KOG3010 Methyltransferase [Gen 99.1 5.9E-11 1.3E-15 94.9 5.5 101 102-211 36-139 (261)
164 COG4976 Predicted methyltransf 99.1 6.1E-12 1.3E-16 99.6 -0.1 101 100-213 126-229 (287)
165 COG0220 Predicted S-adenosylme 99.1 1.9E-10 4.1E-15 93.7 8.2 114 101-214 50-169 (227)
166 PRK04338 N(2),N(2)-dimethylgua 99.1 1.7E-10 3.6E-15 101.5 8.2 98 100-208 58-157 (382)
167 KOG3191 Predicted N6-DNA-methy 99.1 1.3E-09 2.8E-14 83.5 11.4 122 100-222 44-182 (209)
168 PF05891 Methyltransf_PK: AdoM 99.1 4.5E-10 9.6E-15 89.5 9.3 106 99-209 55-161 (218)
169 PF02475 Met_10: Met-10+ like- 99.1 2.1E-10 4.6E-15 91.6 7.3 100 96-206 98-199 (200)
170 COG2520 Predicted methyltransf 99.1 8.7E-10 1.9E-14 94.4 11.1 108 97-215 186-295 (341)
171 PRK14896 ksgA 16S ribosomal RN 99.1 2.6E-09 5.5E-14 89.7 12.7 76 97-176 27-102 (258)
172 PTZ00338 dimethyladenosine tra 99.1 2.8E-09 6.2E-14 90.6 12.7 79 97-177 34-113 (294)
173 PF05219 DREV: DREV methyltran 99.1 1.2E-09 2.6E-14 89.0 9.7 93 99-208 94-187 (265)
174 PF05185 PRMT5: PRMT5 arginine 99.1 1.3E-09 2.7E-14 97.7 10.8 103 100-207 187-295 (448)
175 PF00891 Methyltransf_2: O-met 99.0 1.3E-09 2.9E-14 90.6 10.0 99 98-210 99-200 (241)
176 PRK11727 23S rRNA mA1618 methy 99.0 1E-09 2.2E-14 93.9 9.2 105 73-177 78-201 (321)
177 PRK00274 ksgA 16S ribosomal RN 99.0 1.9E-09 4E-14 91.2 10.5 76 97-176 40-116 (272)
178 COG0144 Sun tRNA and rRNA cyto 99.0 6.6E-09 1.4E-13 90.8 13.3 148 84-231 141-310 (355)
179 COG2265 TrmA SAM-dependent met 99.0 2.8E-09 6.2E-14 94.9 11.1 114 98-222 292-409 (432)
180 KOG3420 Predicted RNA methylas 99.0 4.2E-10 9E-15 82.9 4.8 79 98-177 47-126 (185)
181 PF12147 Methyltransf_20: Puta 99.0 6E-09 1.3E-13 86.1 11.9 120 98-221 134-262 (311)
182 COG3963 Phospholipid N-methylt 99.0 5E-09 1.1E-13 79.2 10.4 128 74-212 24-159 (194)
183 TIGR00308 TRM1 tRNA(guanine-26 99.0 2E-09 4.3E-14 94.3 9.1 97 101-208 46-146 (374)
184 KOG1500 Protein arginine N-met 99.0 2.9E-09 6.3E-14 89.1 9.6 106 98-209 176-282 (517)
185 PLN02823 spermine synthase 99.0 4.3E-09 9.3E-14 90.9 10.8 111 99-210 103-221 (336)
186 PF01739 CheR: CheR methyltran 99.0 2E-09 4.4E-14 85.9 7.9 107 99-210 31-176 (196)
187 COG0116 Predicted N6-adenine-s 99.0 5.5E-09 1.2E-13 90.1 11.0 118 93-211 185-346 (381)
188 PF05958 tRNA_U5-meth_tr: tRNA 99.0 7.6E-09 1.7E-13 90.5 12.2 85 73-159 168-255 (352)
189 KOG2352 Predicted spermine/spe 99.0 7.7E-09 1.7E-13 91.1 11.7 108 102-210 51-162 (482)
190 PF02384 N6_Mtase: N-6 DNA Met 99.0 3.7E-09 8.1E-14 91.2 9.4 116 96-211 43-185 (311)
191 TIGR00755 ksgA dimethyladenosi 98.9 1.5E-08 3.3E-13 84.8 12.5 76 97-176 27-105 (253)
192 PF09445 Methyltransf_15: RNA 98.9 3.5E-09 7.5E-14 81.4 6.2 115 102-219 2-130 (163)
193 PF02527 GidB: rRNA small subu 98.9 2.2E-08 4.7E-13 79.2 10.8 108 102-220 51-159 (184)
194 PRK11783 rlmL 23S rRNA m(2)G24 98.9 2.1E-08 4.5E-13 95.4 12.6 114 98-214 189-352 (702)
195 PRK04148 hypothetical protein; 98.9 2.5E-08 5.4E-13 74.0 10.1 68 99-174 16-86 (134)
196 TIGR00478 tly hemolysin TlyA f 98.9 7.4E-09 1.6E-13 84.6 8.0 89 98-208 74-170 (228)
197 COG0421 SpeE Spermidine syntha 98.9 2E-08 4.4E-13 84.4 10.7 107 101-210 78-191 (282)
198 COG2521 Predicted archaeal met 98.9 4.6E-09 9.9E-14 83.7 5.7 113 97-213 132-249 (287)
199 PRK10611 chemotaxis methyltran 98.9 9.9E-09 2.2E-13 86.6 8.1 105 100-209 116-262 (287)
200 PF06080 DUF938: Protein of un 98.8 1.6E-08 3.5E-13 80.2 8.8 104 102-210 28-142 (204)
201 PF01564 Spermine_synth: Sperm 98.8 3.8E-08 8.3E-13 81.7 10.2 109 98-209 75-191 (246)
202 PF05148 Methyltransf_8: Hypot 98.8 1.1E-08 2.3E-13 80.9 6.2 112 88-224 61-176 (219)
203 PRK00050 16S rRNA m(4)C1402 me 98.8 8.7E-08 1.9E-12 81.1 12.0 73 98-172 18-97 (296)
204 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.8 1.5E-08 3.3E-13 85.9 7.4 144 85-228 71-238 (283)
205 COG1352 CheR Methylase of chem 98.8 3.8E-08 8.3E-13 82.0 9.0 106 99-209 96-241 (268)
206 KOG1661 Protein-L-isoaspartate 98.8 3.6E-08 7.8E-13 77.5 8.0 104 95-211 78-195 (237)
207 PRK01544 bifunctional N5-gluta 98.7 9.5E-08 2.1E-12 87.4 11.0 115 99-213 347-466 (506)
208 TIGR02987 met_A_Alw26 type II 98.7 4.9E-08 1.1E-12 90.2 8.8 113 99-211 31-198 (524)
209 PRK00536 speE spermidine synth 98.7 2.1E-07 4.6E-12 77.4 10.6 99 98-211 71-173 (262)
210 COG3897 Predicted methyltransf 98.7 9.7E-08 2.1E-12 74.3 7.6 104 98-212 78-182 (218)
211 COG0030 KsgA Dimethyladenosine 98.7 1.2E-07 2.7E-12 78.2 8.5 76 98-176 29-106 (259)
212 KOG3045 Predicted RNA methylas 98.7 9.1E-08 2E-12 77.5 7.4 100 88-214 169-269 (325)
213 KOG2730 Methylase [General fun 98.6 2E-08 4.3E-13 79.4 3.3 76 99-175 94-175 (263)
214 KOG2940 Predicted methyltransf 98.6 3.4E-08 7.4E-13 78.6 4.6 113 100-221 73-187 (325)
215 KOG2187 tRNA uracil-5-methyltr 98.6 1.1E-07 2.3E-12 84.3 7.8 89 71-160 352-443 (534)
216 KOG1663 O-methyltransferase [S 98.6 1.9E-07 4.1E-12 74.7 8.0 112 88-209 62-183 (237)
217 COG0357 GidB Predicted S-adeno 98.6 3.1E-07 6.8E-12 73.9 8.4 102 100-212 68-171 (215)
218 COG4076 Predicted RNA methylas 98.5 1.4E-07 2.9E-12 72.9 5.0 101 101-208 34-134 (252)
219 KOG0820 Ribosomal RNA adenine 98.5 6.7E-07 1.5E-11 73.1 8.6 80 95-176 54-134 (315)
220 PF01728 FtsJ: FtsJ-like methy 98.4 2.3E-07 5E-12 73.7 4.5 113 99-222 23-153 (181)
221 TIGR03439 methyl_EasF probable 98.4 3.6E-06 7.9E-11 72.2 11.9 108 97-209 74-197 (319)
222 PF04816 DUF633: Family of unk 98.4 5.4E-06 1.2E-10 66.8 12.1 111 103-223 1-114 (205)
223 KOG1122 tRNA and rRNA cytosine 98.4 5.2E-06 1.1E-10 72.0 11.5 130 93-222 235-384 (460)
224 COG4262 Predicted spermidine s 98.4 2.9E-06 6.2E-11 72.3 9.8 141 64-210 251-408 (508)
225 PF08123 DOT1: Histone methyla 98.4 1.3E-06 2.8E-11 70.3 7.2 105 96-208 39-157 (205)
226 KOG1269 SAM-dependent methyltr 98.3 1.3E-06 2.8E-11 76.2 6.3 108 95-209 106-215 (364)
227 PF07942 N2227: N2227-like pro 98.3 5.4E-06 1.2E-10 69.2 9.4 102 99-208 56-201 (270)
228 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.3 1.9E-06 4.1E-11 71.4 6.6 110 98-210 55-200 (256)
229 COG0293 FtsJ 23S rRNA methylas 98.3 2E-05 4.3E-10 62.8 11.9 115 98-223 44-174 (205)
230 PF01269 Fibrillarin: Fibrilla 98.2 1.6E-05 3.6E-10 63.7 10.8 103 96-209 70-178 (229)
231 KOG3178 Hydroxyindole-O-methyl 98.2 9.3E-06 2E-10 69.2 9.9 102 100-213 178-279 (342)
232 KOG2915 tRNA(1-methyladenosine 98.2 1.8E-05 3.9E-10 64.9 11.0 102 91-204 97-204 (314)
233 PRK10742 putative methyltransf 98.2 5.4E-06 1.2E-10 67.9 8.0 84 93-177 80-176 (250)
234 COG0286 HsdM Type I restrictio 98.2 1.7E-05 3.7E-10 72.5 12.0 126 86-212 174-329 (489)
235 KOG3987 Uncharacterized conser 98.2 1.9E-07 4E-12 73.3 -0.9 94 99-208 112-206 (288)
236 KOG1709 Guanidinoacetate methy 98.2 1.5E-05 3.3E-10 63.1 9.7 115 98-220 100-217 (271)
237 COG0500 SmtA SAM-dependent met 98.2 2.7E-05 5.9E-10 59.6 10.9 103 103-214 52-160 (257)
238 PF05971 Methyltransf_10: Prot 98.2 7.2E-06 1.6E-10 69.3 7.9 104 73-177 69-189 (299)
239 PF03141 Methyltransf_29: Puta 98.2 7.7E-07 1.7E-11 79.0 2.1 101 101-213 119-223 (506)
240 TIGR01444 fkbM_fam methyltrans 98.2 7.1E-06 1.5E-10 62.3 7.0 59 102-160 1-60 (143)
241 PF09243 Rsm22: Mitochondrial 98.2 1.3E-05 2.7E-10 67.9 8.9 109 99-214 33-144 (274)
242 PRK11760 putative 23S rRNA C24 98.1 9.3E-06 2E-10 69.4 8.0 86 98-202 210-296 (357)
243 TIGR00006 S-adenosyl-methyltra 98.1 4.9E-05 1.1E-09 64.7 12.0 74 98-172 19-99 (305)
244 PF00398 RrnaAD: Ribosomal RNA 98.1 7.7E-06 1.7E-10 68.8 7.1 75 98-175 29-107 (262)
245 KOG1331 Predicted methyltransf 98.1 2.3E-06 5.1E-11 70.7 3.8 103 94-210 40-144 (293)
246 COG1189 Predicted rRNA methyla 98.0 3E-05 6.5E-10 62.7 8.6 97 98-209 78-178 (245)
247 PF13679 Methyltransf_32: Meth 98.0 2.1E-05 4.5E-10 59.8 7.1 74 98-171 24-105 (141)
248 PF03059 NAS: Nicotianamine sy 98.0 5.7E-05 1.2E-09 63.3 9.8 107 100-212 121-233 (276)
249 KOG2671 Putative RNA methylase 98.0 1E-05 2.2E-10 68.4 5.2 120 90-210 199-355 (421)
250 PF11968 DUF3321: Putative met 98.0 2.7E-05 5.9E-10 62.2 7.3 91 101-212 53-152 (219)
251 COG1889 NOP1 Fibrillarin-like 97.9 0.0001 2.3E-09 58.0 9.6 102 96-208 73-179 (231)
252 PF01861 DUF43: Protein of unk 97.9 0.00064 1.4E-08 55.4 13.4 101 98-208 43-148 (243)
253 PF02005 TRM: N2,N2-dimethylgu 97.9 3.9E-05 8.4E-10 67.6 6.7 100 99-209 49-154 (377)
254 PF07091 FmrO: Ribosomal RNA m 97.8 7.5E-05 1.6E-09 61.1 7.4 82 96-178 102-184 (251)
255 COG1867 TRM1 N2,N2-dimethylgua 97.8 6.8E-05 1.5E-09 64.4 7.3 98 100-208 53-153 (380)
256 COG4798 Predicted methyltransf 97.8 0.00014 3E-09 56.9 8.3 115 95-209 44-166 (238)
257 PF13578 Methyltransf_24: Meth 97.8 1.4E-05 3E-10 57.5 2.6 97 104-209 1-105 (106)
258 KOG2198 tRNA cytosine-5-methyl 97.8 0.0011 2.5E-08 57.0 13.9 127 93-219 149-306 (375)
259 PF06962 rRNA_methylase: Putat 97.8 0.0003 6.6E-09 52.6 9.1 89 124-214 1-97 (140)
260 COG0275 Predicted S-adenosylme 97.7 0.00088 1.9E-08 56.3 12.5 73 97-170 21-101 (314)
261 KOG4589 Cell division protein 97.7 0.00064 1.4E-08 52.9 10.0 109 98-217 68-192 (232)
262 KOG3115 Methyltransferase-like 97.7 0.00024 5.2E-09 56.0 7.7 124 99-222 60-197 (249)
263 PF04672 Methyltransf_19: S-ad 97.6 0.00037 8.1E-09 57.9 8.7 109 101-213 70-194 (267)
264 PF11599 AviRa: RRNA methyltra 97.6 0.00063 1.4E-08 54.2 9.0 110 99-209 51-214 (246)
265 COG3129 Predicted SAM-dependen 97.6 0.00011 2.3E-09 59.0 4.6 104 74-178 45-166 (292)
266 COG2384 Predicted SAM-dependen 97.6 0.0022 4.7E-08 51.5 11.9 115 99-223 16-133 (226)
267 PHA01634 hypothetical protein 97.5 0.0006 1.3E-08 49.6 7.3 48 99-146 28-75 (156)
268 KOG1596 Fibrillarin and relate 97.5 0.0015 3.3E-08 52.9 10.2 103 96-209 153-261 (317)
269 KOG1562 Spermidine synthase [A 97.3 0.0029 6.2E-08 52.9 10.3 130 97-229 119-257 (337)
270 KOG3201 Uncharacterized conser 97.3 0.00021 4.5E-09 54.2 3.0 118 99-223 29-156 (201)
271 KOG2798 Putative trehalase [Ca 97.3 0.00076 1.6E-08 56.7 6.5 101 100-208 151-295 (369)
272 KOG4058 Uncharacterized conser 97.2 0.0015 3.2E-08 48.9 6.8 105 98-214 71-177 (199)
273 PF01795 Methyltransf_5: MraW 97.2 0.00081 1.7E-08 57.3 6.2 75 97-172 18-100 (310)
274 KOG1227 Putative methyltransfe 97.2 0.00017 3.6E-09 60.2 1.9 96 98-204 193-290 (351)
275 PF03269 DUF268: Caenorhabditi 97.2 0.00045 9.7E-09 52.5 4.0 107 100-213 2-115 (177)
276 cd00315 Cyt_C5_DNA_methylase C 97.1 0.0014 3.1E-08 55.5 6.5 71 102-178 2-75 (275)
277 PF04445 SAM_MT: Putative SAM- 97.0 0.0024 5.2E-08 52.2 6.9 76 101-177 77-163 (234)
278 KOG1501 Arginine N-methyltrans 97.0 0.0012 2.6E-08 58.0 5.3 60 101-160 68-128 (636)
279 KOG1099 SAM-dependent methyltr 97.0 0.0019 4.1E-08 52.0 5.6 103 101-214 43-168 (294)
280 PRK11524 putative methyltransf 96.9 0.0021 4.5E-08 54.8 6.0 46 98-144 207-252 (284)
281 COG1064 AdhP Zn-dependent alco 96.9 0.0061 1.3E-07 52.7 8.8 95 96-211 163-261 (339)
282 COG5459 Predicted rRNA methyla 96.9 0.0026 5.6E-08 54.4 6.2 112 99-214 113-230 (484)
283 PF04989 CmcI: Cephalosporin h 96.9 0.0052 1.1E-07 49.2 7.3 101 99-209 32-147 (206)
284 PRK13699 putative methylase; P 96.7 0.0042 9E-08 51.1 6.2 47 98-145 162-208 (227)
285 COG1568 Predicted methyltransf 96.7 0.019 4.2E-07 47.7 9.8 113 96-217 149-268 (354)
286 PF01555 N6_N4_Mtase: DNA meth 96.7 0.0026 5.6E-08 52.0 4.7 42 98-140 190-231 (231)
287 KOG1253 tRNA methyltransferase 96.7 0.00092 2E-08 59.6 1.8 104 95-209 105-216 (525)
288 KOG2793 Putative N2,N2-dimethy 96.6 0.018 3.9E-07 47.6 8.9 107 99-213 86-203 (248)
289 PF03141 Methyltransf_29: Puta 96.4 0.0044 9.4E-08 55.7 4.3 107 101-219 367-477 (506)
290 PF02636 Methyltransf_28: Puta 96.2 0.0088 1.9E-07 50.0 5.3 76 100-179 19-109 (252)
291 PF00145 DNA_methylase: C-5 cy 96.2 0.016 3.5E-07 50.1 7.2 69 102-177 2-73 (335)
292 TIGR00497 hsdM type I restrict 96.1 0.11 2.3E-06 48.1 12.2 112 99-210 217-356 (501)
293 KOG0024 Sorbitol dehydrogenase 96.1 0.027 5.9E-07 47.9 7.5 101 95-212 165-276 (354)
294 KOG2920 Predicted methyltransf 96.1 0.0053 1.1E-07 51.2 3.3 104 98-208 115-233 (282)
295 COG0270 Dcm Site-specific DNA 96.0 0.048 1E-06 47.5 9.0 103 101-209 4-116 (328)
296 COG1565 Uncharacterized conser 96.0 0.015 3.2E-07 50.3 5.7 80 99-181 77-165 (370)
297 cd08283 FDH_like_1 Glutathione 96.0 0.024 5.1E-07 50.5 7.2 110 95-210 180-307 (386)
298 TIGR00675 dcm DNA-methyltransf 95.7 0.062 1.3E-06 46.5 8.5 70 103-178 1-72 (315)
299 PF06859 Bin3: Bicoid-interact 95.6 0.0026 5.7E-08 45.3 -0.3 46 165-211 1-46 (110)
300 PF07757 AdoMet_MTase: Predict 95.5 0.012 2.6E-07 41.7 2.7 32 99-131 58-89 (112)
301 KOG2078 tRNA modification enzy 95.5 0.011 2.3E-07 52.0 2.7 63 97-160 247-311 (495)
302 KOG2352 Predicted spermine/spe 95.4 0.041 8.9E-07 49.4 6.3 112 98-210 294-417 (482)
303 PF05711 TylF: Macrocin-O-meth 95.2 0.14 3.1E-06 42.4 8.6 126 91-227 66-228 (248)
304 PRK09424 pntA NAD(P) transhydr 95.1 0.21 4.6E-06 46.0 10.1 102 97-210 162-286 (509)
305 KOG0822 Protein kinase inhibit 95.1 0.034 7.3E-07 50.3 4.8 105 100-210 368-479 (649)
306 PRK09880 L-idonate 5-dehydroge 95.1 0.086 1.9E-06 46.1 7.3 96 98-210 168-267 (343)
307 PRK10458 DNA cytosine methylas 95.0 0.28 6E-06 44.8 10.2 77 100-178 88-182 (467)
308 PF02254 TrkA_N: TrkA-N domain 94.6 0.33 7.1E-06 35.0 8.3 95 108-219 4-106 (116)
309 PLN02668 indole-3-acetate carb 94.6 0.41 8.8E-06 42.4 10.1 112 100-211 64-239 (386)
310 cd08230 glucose_DH Glucose deh 94.5 0.23 5E-06 43.6 8.5 95 98-210 171-270 (355)
311 cd08254 hydroxyacyl_CoA_DH 6-h 94.4 0.3 6.5E-06 42.2 9.0 97 95-209 161-263 (338)
312 KOG2912 Predicted DNA methylas 94.4 0.078 1.7E-06 45.0 4.9 105 71-176 67-189 (419)
313 COG1255 Uncharacterized protei 94.3 0.29 6.2E-06 35.2 6.9 63 99-173 13-78 (129)
314 COG4301 Uncharacterized conser 94.1 1.1 2.3E-05 37.0 10.6 113 96-214 75-198 (321)
315 COG1063 Tdh Threonine dehydrog 94.0 0.37 8E-06 42.4 8.8 99 98-212 167-272 (350)
316 PF00107 ADH_zinc_N: Zinc-bind 94.0 0.11 2.4E-06 38.2 4.7 84 109-212 1-92 (130)
317 TIGR03451 mycoS_dep_FDH mycoth 93.8 0.26 5.6E-06 43.3 7.4 98 96-210 173-277 (358)
318 PTZ00357 methyltransferase; Pr 93.7 0.26 5.7E-06 46.3 7.3 71 101-171 702-798 (1072)
319 PRK13699 putative methylase; P 93.6 0.22 4.8E-06 40.9 6.2 69 151-219 3-82 (227)
320 COG4627 Uncharacterized protei 93.5 0.023 5E-07 43.0 0.3 44 163-211 45-88 (185)
321 PF03492 Methyltransf_7: SAM d 93.5 0.62 1.4E-05 40.7 9.2 113 99-211 16-185 (334)
322 cd08232 idonate-5-DH L-idonate 93.2 0.44 9.5E-06 41.4 7.8 94 99-209 165-262 (339)
323 TIGR01202 bchC 2-desacetyl-2-h 93.2 0.32 6.9E-06 41.8 6.8 88 98-210 143-232 (308)
324 KOG2651 rRNA adenine N-6-methy 93.2 0.15 3.3E-06 44.4 4.6 51 90-141 144-195 (476)
325 COG2961 ComJ Protein involved 93.1 2.9 6.3E-05 34.6 11.5 158 50-222 44-208 (279)
326 PRK11524 putative methyltransf 93.1 0.21 4.5E-06 42.6 5.4 62 149-210 8-81 (284)
327 cd05188 MDR Medium chain reduc 93.1 0.27 5.9E-06 40.8 6.1 97 97-211 132-234 (271)
328 cd08281 liver_ADH_like1 Zinc-d 93.0 0.17 3.8E-06 44.7 5.1 98 96-210 188-291 (371)
329 PF10237 N6-adenineMlase: Prob 93.0 0.81 1.7E-05 35.4 8.0 105 98-219 24-133 (162)
330 PF03686 UPF0146: Uncharacteri 93.0 0.1 2.2E-06 38.3 2.8 64 98-173 12-78 (127)
331 cd08237 ribitol-5-phosphate_DH 92.3 0.65 1.4E-05 40.5 7.6 94 97-210 161-257 (341)
332 PF11312 DUF3115: Protein of u 92.2 0.42 9.1E-06 40.8 6.0 114 98-213 85-246 (315)
333 TIGR02822 adh_fam_2 zinc-bindi 92.1 1 2.2E-05 39.1 8.6 92 96-210 162-255 (329)
334 cd08255 2-desacetyl-2-hydroxye 92.0 1.1 2.4E-05 37.5 8.6 96 95-209 93-190 (277)
335 PRK05786 fabG 3-ketoacyl-(acyl 92.0 3.9 8.5E-05 33.2 11.6 108 99-209 4-135 (238)
336 TIGR03366 HpnZ_proposed putati 91.9 0.28 6.2E-06 41.5 4.8 95 98-210 119-219 (280)
337 COG3510 CmcI Cephalosporin hyd 91.9 0.83 1.8E-05 36.2 6.8 101 99-211 69-182 (237)
338 PF07279 DUF1442: Protein of u 91.6 2.6 5.7E-05 34.0 9.5 83 89-172 31-122 (218)
339 PRK06701 short chain dehydroge 91.5 4 8.7E-05 34.7 11.5 109 99-209 45-181 (290)
340 cd08234 threonine_DH_like L-th 91.3 1.9 4.1E-05 37.2 9.4 96 95-209 155-257 (334)
341 PF02737 3HCDH_N: 3-hydroxyacy 91.0 3.2 7E-05 32.7 9.6 107 102-221 1-126 (180)
342 PF10354 DUF2431: Domain of un 90.8 2.6 5.6E-05 32.8 8.7 107 106-214 3-130 (166)
343 PRK08265 short chain dehydroge 90.7 6.3 0.00014 32.7 11.8 71 99-174 5-89 (261)
344 PLN02740 Alcohol dehydrogenase 90.7 1.2 2.7E-05 39.5 7.8 97 95-210 194-301 (381)
345 PRK07806 short chain dehydroge 90.3 7.7 0.00017 31.7 11.9 109 99-209 5-134 (248)
346 COG0604 Qor NADPH:quinone redu 90.3 1.6 3.5E-05 38.0 7.9 98 95-211 138-243 (326)
347 PRK06035 3-hydroxyacyl-CoA deh 90.2 3.6 7.8E-05 35.1 10.0 108 101-221 4-133 (291)
348 PRK12939 short chain dehydroge 90.2 4.5 9.7E-05 33.1 10.4 73 99-174 6-93 (250)
349 PRK10309 galactitol-1-phosphat 90.2 0.57 1.2E-05 40.9 5.2 97 96-209 157-260 (347)
350 cd08239 THR_DH_like L-threonin 90.2 0.57 1.2E-05 40.7 5.2 98 96-210 160-263 (339)
351 PRK09260 3-hydroxybutyryl-CoA 90.2 2.5 5.5E-05 36.0 9.0 107 102-220 3-128 (288)
352 cd05285 sorbitol_DH Sorbitol d 90.1 1.4 3.1E-05 38.3 7.6 98 95-209 158-265 (343)
353 PF04378 RsmJ: Ribosomal RNA s 90.0 2.3 5.1E-05 35.2 8.2 118 91-219 50-174 (245)
354 PRK07109 short chain dehydroge 89.9 5.9 0.00013 34.5 11.3 75 99-175 7-95 (334)
355 PRK08324 short chain dehydroge 89.9 4 8.6E-05 39.4 11.0 108 99-209 421-557 (681)
356 PRK05808 3-hydroxybutyryl-CoA 89.7 2 4.3E-05 36.5 8.0 107 102-221 5-130 (282)
357 cd08285 NADP_ADH NADP(H)-depen 89.7 1.6 3.4E-05 38.2 7.6 97 96-209 163-266 (351)
358 PLN03154 putative allyl alcoho 89.6 1.1 2.4E-05 39.3 6.5 96 96-209 155-258 (348)
359 PF11899 DUF3419: Protein of u 89.6 1 2.2E-05 40.0 6.2 63 146-213 273-338 (380)
360 PRK08589 short chain dehydroge 89.6 9.1 0.0002 32.0 11.9 74 99-175 5-92 (272)
361 PRK07533 enoyl-(acyl carrier p 89.3 11 0.00025 31.2 12.2 74 99-175 9-98 (258)
362 cd05278 FDH_like Formaldehyde 89.3 0.62 1.3E-05 40.5 4.7 97 96-209 164-267 (347)
363 cd08245 CAD Cinnamyl alcohol d 89.3 2.4 5.2E-05 36.5 8.4 95 96-209 159-256 (330)
364 PRK07066 3-hydroxybutyryl-CoA 89.2 4 8.7E-05 35.4 9.5 109 101-221 8-131 (321)
365 PRK03659 glutathione-regulated 89.1 2.7 5.8E-05 39.9 9.1 97 101-217 401-506 (601)
366 KOG1201 Hydroxysteroid 17-beta 89.1 2.5 5.4E-05 36.0 7.8 75 98-175 36-124 (300)
367 PRK06181 short chain dehydroge 89.1 11 0.00023 31.2 12.0 71 101-174 2-87 (263)
368 COG0863 DNA modification methy 88.9 1.1 2.4E-05 38.2 5.9 49 96-145 219-267 (302)
369 PRK09072 short chain dehydroge 88.9 8.9 0.00019 31.8 11.3 74 99-175 4-90 (263)
370 PRK15001 SAM-dependent 23S rib 88.9 6.8 0.00015 34.8 10.8 99 102-212 47-145 (378)
371 PF11899 DUF3419: Protein of u 88.8 1.4 2.9E-05 39.2 6.4 51 92-143 28-78 (380)
372 TIGR03201 dearomat_had 6-hydro 88.8 2.4 5.3E-05 37.0 8.1 44 96-140 163-208 (349)
373 PRK01747 mnmC bifunctional tRN 88.7 1.7 3.7E-05 41.7 7.6 110 99-212 57-209 (662)
374 PLN02827 Alcohol dehydrogenase 88.6 2.2 4.8E-05 37.8 7.8 99 95-210 189-296 (378)
375 cd08293 PTGR2 Prostaglandin re 88.5 3.4 7.4E-05 35.8 8.8 96 97-209 150-254 (345)
376 COG2933 Predicted SAM-dependen 88.4 1.6 3.4E-05 36.4 6.0 70 97-174 209-279 (358)
377 PRK07530 3-hydroxybutyryl-CoA 88.2 11 0.00023 32.2 11.5 103 101-216 5-126 (292)
378 PRK05872 short chain dehydroge 88.2 10 0.00022 32.3 11.4 74 99-175 8-95 (296)
379 PRK05708 2-dehydropantoate 2-r 88.2 7.7 0.00017 33.4 10.6 99 101-213 3-108 (305)
380 COG0677 WecC UDP-N-acetyl-D-ma 88.0 5.6 0.00012 35.3 9.4 113 101-223 10-144 (436)
381 PRK07819 3-hydroxybutyryl-CoA 87.9 3.7 8.1E-05 35.0 8.4 108 101-221 6-133 (286)
382 TIGR02818 adh_III_F_hyde S-(hy 87.9 2.3 5.1E-05 37.5 7.5 98 96-210 182-288 (368)
383 KOG0821 Predicted ribosomal RN 87.8 0.73 1.6E-05 37.3 3.7 61 99-160 50-110 (326)
384 PRK08594 enoyl-(acyl carrier p 87.8 15 0.00032 30.5 11.9 72 99-174 6-96 (257)
385 TIGR02825 B4_12hDH leukotriene 87.7 1.2 2.5E-05 38.5 5.3 96 95-209 134-237 (325)
386 cd08236 sugar_DH NAD(P)-depend 87.6 1.1 2.5E-05 38.8 5.3 97 96-209 156-258 (343)
387 PRK07417 arogenate dehydrogena 87.6 6.9 0.00015 33.1 9.9 82 102-203 2-85 (279)
388 PRK10669 putative cation:proto 87.4 4.1 9E-05 38.3 9.1 92 101-212 418-518 (558)
389 PF03514 GRAS: GRAS domain fam 87.3 12 0.00026 33.3 11.5 116 90-208 102-243 (374)
390 cd08261 Zn_ADH7 Alcohol dehydr 87.2 1 2.2E-05 39.0 4.7 97 95-209 155-258 (337)
391 TIGR00027 mthyl_TIGR00027 meth 87.1 8.4 0.00018 32.4 9.9 105 101-212 83-200 (260)
392 PRK08293 3-hydroxybutyryl-CoA 87.0 8.3 0.00018 32.8 10.1 106 102-219 5-130 (287)
393 cd08238 sorbose_phosphate_red 86.9 3 6.5E-05 37.5 7.7 99 96-208 172-287 (410)
394 PRK08703 short chain dehydroge 86.9 4.9 0.00011 32.8 8.4 75 99-174 5-96 (239)
395 cd08278 benzyl_alcohol_DH Benz 86.9 1.1 2.5E-05 39.4 4.9 96 96-210 183-286 (365)
396 cd00401 AdoHcyase S-adenosyl-L 86.7 3.5 7.6E-05 37.1 7.8 90 97-211 199-291 (413)
397 cd05281 TDH Threonine dehydrog 86.6 3.5 7.6E-05 35.8 7.8 95 98-209 162-262 (341)
398 PRK08217 fabG 3-ketoacyl-(acyl 86.6 4.8 0.0001 32.9 8.3 74 99-174 4-91 (253)
399 PRK08415 enoyl-(acyl carrier p 86.5 18 0.0004 30.4 12.6 108 99-209 4-143 (274)
400 PRK06128 oxidoreductase; Provi 86.5 17 0.00036 31.0 11.8 109 99-209 54-191 (300)
401 PRK08945 putative oxoacyl-(acy 86.5 6.5 0.00014 32.2 9.0 76 98-174 10-101 (247)
402 PRK06505 enoyl-(acyl carrier p 86.0 19 0.00042 30.1 11.9 74 99-175 6-95 (271)
403 KOG0022 Alcohol dehydrogenase, 86.0 1.9 4.1E-05 37.0 5.4 46 95-140 188-235 (375)
404 PRK06079 enoyl-(acyl carrier p 85.9 18 0.0004 29.8 12.1 72 99-175 6-93 (252)
405 PRK08339 short chain dehydroge 85.7 5.1 0.00011 33.4 8.0 75 99-174 7-94 (263)
406 PRK05867 short chain dehydroge 85.6 4.8 0.0001 33.2 7.8 75 99-175 8-96 (253)
407 PLN02545 3-hydroxybutyryl-CoA 85.3 11 0.00024 32.1 10.0 106 101-219 5-129 (295)
408 PRK06139 short chain dehydroge 85.3 6.5 0.00014 34.2 8.7 75 99-175 6-94 (330)
409 PRK07985 oxidoreductase; Provi 85.1 12 0.00027 31.7 10.3 109 99-209 48-185 (294)
410 KOG2360 Proliferation-associat 85.1 1.6 3.5E-05 38.3 4.7 86 90-175 204-294 (413)
411 TIGR02819 fdhA_non_GSH formald 85.0 3.6 7.9E-05 36.8 7.2 109 96-210 182-300 (393)
412 PRK07904 short chain dehydroge 84.9 5.2 0.00011 33.2 7.7 75 99-173 7-95 (253)
413 PRK12937 short chain dehydroge 84.9 19 0.00042 29.2 11.5 109 99-209 4-139 (245)
414 PRK07890 short chain dehydroge 84.8 6.5 0.00014 32.4 8.3 74 99-174 4-91 (258)
415 PRK08213 gluconate 5-dehydroge 84.8 7 0.00015 32.3 8.5 73 99-174 11-98 (259)
416 cd08295 double_bond_reductase_ 84.6 3.2 6.8E-05 36.0 6.5 97 95-209 147-251 (338)
417 cd08231 MDR_TM0436_like Hypoth 84.5 4.9 0.00011 35.2 7.7 93 98-209 176-280 (361)
418 PRK07832 short chain dehydroge 84.4 22 0.00048 29.6 11.4 72 102-174 2-87 (272)
419 TIGR00561 pntA NAD(P) transhyd 84.3 5.3 0.00011 37.0 7.9 42 98-140 162-205 (511)
420 cd08294 leukotriene_B4_DH_like 84.3 3.6 7.7E-05 35.3 6.6 96 95-209 139-241 (329)
421 PRK11064 wecC UDP-N-acetyl-D-m 84.1 6.3 0.00014 35.6 8.3 100 101-210 4-120 (415)
422 PRK06172 short chain dehydroge 84.1 6.5 0.00014 32.3 8.0 75 99-175 6-94 (253)
423 PRK06124 gluconate 5-dehydroge 84.1 6.6 0.00014 32.3 8.0 74 99-174 10-97 (256)
424 COG1062 AdhC Zn-dependent alco 84.0 3 6.5E-05 36.2 5.7 103 96-217 182-293 (366)
425 PRK05396 tdh L-threonine 3-deh 84.0 5 0.00011 34.7 7.5 96 98-210 162-264 (341)
426 PRK03562 glutathione-regulated 84.0 7 0.00015 37.3 8.9 92 101-212 401-501 (621)
427 cd08277 liver_alcohol_DH_like 84.0 5 0.00011 35.3 7.5 98 96-210 181-287 (365)
428 PRK09291 short chain dehydroge 83.7 8.8 0.00019 31.6 8.6 73 101-175 3-83 (257)
429 PRK07677 short chain dehydroge 83.6 6.7 0.00014 32.3 7.8 72 101-174 2-87 (252)
430 PRK11730 fadB multifunctional 83.5 14 0.0003 36.0 10.8 109 101-222 314-441 (715)
431 PF05206 TRM13: Methyltransfer 83.5 8.9 0.00019 32.2 8.3 63 98-161 17-86 (259)
432 PF02086 MethyltransfD12: D12 83.5 1.3 2.9E-05 36.8 3.5 44 99-143 20-63 (260)
433 KOG3924 Putative protein methy 83.5 3.7 8.1E-05 36.2 6.2 110 96-213 189-312 (419)
434 PRK07102 short chain dehydroge 83.4 6.5 0.00014 32.1 7.6 72 101-173 2-84 (243)
435 PRK09496 trkA potassium transp 83.3 15 0.00033 33.3 10.6 64 100-171 231-303 (453)
436 cd08233 butanediol_DH_like (2R 83.2 4.4 9.6E-05 35.3 6.9 98 96-210 169-273 (351)
437 PF00106 adh_short: short chai 83.1 5.5 0.00012 30.3 6.7 73 102-175 2-90 (167)
438 PRK07035 short chain dehydroge 83.1 7.6 0.00016 31.9 7.9 74 99-174 7-94 (252)
439 COG0287 TyrA Prephenate dehydr 83.1 7.1 0.00015 33.2 7.7 106 101-225 4-112 (279)
440 PRK07502 cyclohexadienyl dehyd 83.0 8.9 0.00019 32.9 8.5 88 101-206 7-97 (307)
441 PLN02989 cinnamyl-alcohol dehy 83.0 18 0.0004 31.0 10.6 74 99-174 4-86 (325)
442 PRK07063 short chain dehydroge 82.5 8.3 0.00018 31.9 8.0 74 99-174 6-95 (260)
443 TIGR00692 tdh L-threonine 3-de 82.5 6.8 0.00015 34.0 7.7 97 97-210 159-262 (340)
444 PRK06500 short chain dehydroge 82.3 25 0.00055 28.6 10.9 72 99-175 5-90 (249)
445 cd08279 Zn_ADH_class_III Class 82.2 3.3 7.1E-05 36.4 5.7 97 95-210 178-283 (363)
446 PRK12744 short chain dehydroge 82.1 27 0.00058 28.7 11.8 108 99-208 7-144 (257)
447 PLN02702 L-idonate 5-dehydroge 82.1 9.7 0.00021 33.4 8.6 97 96-209 178-285 (364)
448 PRK11154 fadJ multifunctional 82.1 19 0.00041 35.1 11.1 108 101-221 310-437 (708)
449 PRK05876 short chain dehydroge 82.1 8.5 0.00018 32.4 8.0 75 99-175 5-93 (275)
450 cd08300 alcohol_DH_class_III c 81.9 6.8 0.00015 34.5 7.6 98 96-210 183-289 (368)
451 PRK08862 short chain dehydroge 81.8 8 0.00017 31.5 7.5 73 99-173 4-91 (227)
452 PRK06125 short chain dehydroge 81.6 9.4 0.0002 31.5 8.0 75 99-174 6-90 (259)
453 PRK07097 gluconate 5-dehydroge 81.4 9.1 0.0002 31.8 7.9 75 99-175 9-97 (265)
454 COG4017 Uncharacterized protei 81.4 5.9 0.00013 31.5 6.0 69 98-178 43-112 (254)
455 PRK06130 3-hydroxybutyryl-CoA 81.4 13 0.00027 32.0 8.9 40 101-141 5-46 (311)
456 PRK07791 short chain dehydroge 81.3 13 0.00027 31.5 8.8 75 99-175 5-102 (286)
457 PRK05854 short chain dehydroge 81.1 13 0.00029 31.9 9.0 76 99-175 13-103 (313)
458 TIGR02354 thiF_fam2 thiamine b 81.0 24 0.00053 28.3 9.8 33 99-131 20-54 (200)
459 PRK06484 short chain dehydroge 81.0 27 0.00059 32.3 11.5 107 98-209 267-400 (520)
460 cd08240 6_hydroxyhexanoate_dh_ 80.9 3.9 8.4E-05 35.6 5.6 93 98-209 174-274 (350)
461 PRK07814 short chain dehydroge 80.9 10 0.00022 31.4 8.0 74 99-174 9-96 (263)
462 PRK07478 short chain dehydroge 80.8 11 0.00023 31.1 8.0 75 99-175 5-93 (254)
463 KOG2539 Mitochondrial/chloropl 80.7 7.8 0.00017 35.1 7.3 110 99-212 200-318 (491)
464 PRK12747 short chain dehydroge 80.6 30 0.00065 28.3 11.3 109 99-209 3-144 (252)
465 PRK05693 short chain dehydroge 80.5 25 0.00053 29.3 10.3 66 102-175 3-82 (274)
466 PRK12548 shikimate 5-dehydroge 80.5 35 0.00076 29.1 11.1 116 99-223 125-250 (289)
467 PRK07774 short chain dehydroge 80.0 15 0.00032 30.1 8.6 74 99-175 5-93 (250)
468 PRK05866 short chain dehydroge 80.0 11 0.00023 32.2 7.9 74 99-174 39-126 (293)
469 cd01065 NAD_bind_Shikimate_DH 79.9 20 0.00043 26.9 8.7 73 99-176 18-92 (155)
470 PRK06522 2-dehydropantoate 2-r 79.9 29 0.00062 29.5 10.6 95 102-212 2-103 (304)
471 KOG0023 Alcohol dehydrogenase, 79.8 11 0.00024 32.5 7.6 100 97-212 179-282 (360)
472 PLN02896 cinnamyl-alcohol dehy 79.8 37 0.00081 29.6 11.5 74 98-175 8-89 (353)
473 PRK06940 short chain dehydroge 79.8 20 0.00044 30.0 9.5 70 102-175 4-86 (275)
474 PRK07831 short chain dehydroge 79.6 14 0.0003 30.6 8.4 76 99-175 16-107 (262)
475 PRK08159 enoyl-(acyl carrier p 79.6 35 0.00077 28.5 12.6 75 98-175 8-98 (272)
476 PRK07454 short chain dehydroge 79.3 14 0.0003 30.1 8.2 73 100-175 6-93 (241)
477 COG5379 BtaA S-adenosylmethion 79.3 6.2 0.00013 33.6 5.8 46 98-144 62-107 (414)
478 PF02153 PDH: Prephenate dehyd 79.3 8.6 0.00019 32.2 6.9 90 113-223 1-91 (258)
479 TIGR02356 adenyl_thiF thiazole 79.0 8.2 0.00018 31.0 6.5 33 99-131 20-54 (202)
480 TIGR00518 alaDH alanine dehydr 78.9 6 0.00013 35.1 6.2 99 99-209 166-267 (370)
481 PRK08643 acetoin reductase; Va 78.8 13 0.00028 30.6 7.9 73 100-174 2-88 (256)
482 PRK07024 short chain dehydroge 78.6 10 0.00022 31.3 7.3 72 101-175 3-88 (257)
483 PF13561 adh_short_C2: Enoyl-( 78.5 7.8 0.00017 31.7 6.5 93 113-209 12-133 (241)
484 PF05050 Methyltransf_21: Meth 78.4 6.1 0.00013 30.0 5.5 41 105-145 1-48 (167)
485 PRK07523 gluconate 5-dehydroge 78.3 13 0.00029 30.5 7.9 74 99-175 9-97 (255)
486 PRK06194 hypothetical protein; 78.2 13 0.00028 31.2 7.9 75 99-175 5-93 (287)
487 PRK12826 3-ketoacyl-(acyl-carr 78.2 16 0.00034 29.8 8.2 73 99-174 5-92 (251)
488 cd08263 Zn_ADH10 Alcohol dehyd 78.2 19 0.00042 31.5 9.2 95 96-209 184-287 (367)
489 PRK13394 3-hydroxybutyrate deh 78.1 14 0.0003 30.4 8.0 75 99-175 6-94 (262)
490 PRK07889 enoyl-(acyl carrier p 77.6 39 0.00084 27.9 11.0 106 99-209 6-145 (256)
491 PRK06113 7-alpha-hydroxysteroi 77.5 15 0.00032 30.3 7.9 75 99-175 10-98 (255)
492 PRK08177 short chain dehydroge 77.3 29 0.00064 27.9 9.5 66 102-174 3-80 (225)
493 PRK06484 short chain dehydroge 77.3 33 0.00071 31.7 10.9 72 99-175 4-89 (520)
494 PRK09242 tropinone reductase; 77.0 15 0.00033 30.2 7.8 75 99-175 8-98 (257)
495 PRK07062 short chain dehydroge 76.9 15 0.00033 30.3 7.9 76 99-175 7-97 (265)
496 PRK07231 fabG 3-ketoacyl-(acyl 76.9 15 0.00033 29.9 7.8 74 99-175 4-91 (251)
497 TIGR03206 benzo_BadH 2-hydroxy 76.7 16 0.00035 29.8 7.9 74 99-174 2-89 (250)
498 KOG1198 Zinc-binding oxidoredu 76.6 9.5 0.00021 33.5 6.7 72 96-172 154-232 (347)
499 PF03721 UDPG_MGDP_dh_N: UDP-g 76.6 10 0.00022 30.0 6.3 103 102-209 2-120 (185)
500 PLN03209 translocon at the inn 76.6 15 0.00033 34.5 8.2 74 98-173 78-167 (576)
No 1
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=100.00 E-value=4e-37 Score=232.24 Aligned_cols=216 Identities=58% Similarity=0.943 Sum_probs=188.4
Q ss_pred CCCCccccCcHHHHHHHHHHHhhchhccCCccccccCcchhhHHhhhhcccccccccCcccccccccccchhhhccccCC
Q 023703 20 PEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLS 99 (278)
Q Consensus 20 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (278)
+++..|.+|+++|||..|..+..+|.+++..++.||++....++-.|..+..... .+. ..
T Consensus 8 adl~~S~LGtK~yWD~~Y~~El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~~~------------------rv~--~~ 67 (227)
T KOG1271|consen 8 ADLGQSKLGTKSYWDAAYELELTNFREHGDEGEVWFGEDAEERIVDWLKDLIVIS------------------RVS--KQ 67 (227)
T ss_pred ccccccccchHHHHHHHHHHHHhhcccCCCccceecCCcHHHHHHHHHHhhhhhh------------------hhc--cc
Confidence 5678999999999999999999999999999999999998888889987553100 011 11
Q ss_pred CCeEEEEecCCCHHHHHHhhCCCC-cEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCc-cCCCccEEEeCCccc
Q 023703 100 SWSVLDIGTGNGLLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTK-LERQFQLVMDKGTLD 176 (278)
Q Consensus 100 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~-~~~~fD~v~~~~~~~ 176 (278)
..+|||+|||+|.+...|++.|+. .++|+|+|+.+++.|+..++..++++ |+|.+.|+.+.. ..++||+|..+++++
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 229999999999999999999875 59999999999999999999999987 999999999865 478999999999999
Q ss_pred eeccCCCChhhH-HHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhhhhhcccccccchhhhcccccCCCCceeeeeec
Q 023703 177 AIGLHPDGPLKR-IMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEHEIKDEEACREPPFRYLNHVR 255 (278)
Q Consensus 177 ~~~~~~~~~~~~-~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (278)
++.++++.+..+ ..++..+.+.|+|||+++|.+||.+.+++.+.+.. .+|++...++
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~----------------------~~f~~~~tvp 205 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFEN----------------------FNFEYLSTVP 205 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhc----------------------CCeEEEEeec
Confidence 999998777655 67889999999999999999999999999998775 3478888888
Q ss_pred CCcceeeCCcCCCeEEEEEEEeC
Q 023703 256 TYPTFMFGGSEGSRVATVAFLRN 278 (278)
Q Consensus 256 ~~~~~~~~g~~g~~v~~~~~~~~ 278 (278)
.|.|.|||..|++|++++|+|.
T Consensus 206 -~ptF~FgG~~G~tvt~vaF~~k 227 (227)
T KOG1271|consen 206 -TPTFMFGGSVGSTVTSVAFLRK 227 (227)
T ss_pred -cceEEeccccccEEEEEEEecC
Confidence 4699999999999999999883
No 2
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.85 E-value=4.8e-21 Score=157.23 Aligned_cols=146 Identities=23% Similarity=0.357 Sum_probs=94.1
Q ss_pred ccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeC
Q 023703 96 KYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDK 172 (278)
Q Consensus 96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~ 172 (278)
...++.+|||+|||||.++..+++. + ..+|+|+|+|+.|++.|+++....+..+++++++|+.++++ +++||+|++.
T Consensus 44 ~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~ 123 (233)
T PF01209_consen 44 GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCS 123 (233)
T ss_dssp T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEE
T ss_pred CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHH
Confidence 4467889999999999999999886 3 24899999999999999999998877789999999999876 6899999998
Q ss_pred CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhhhhhcccccccchhhhcccccCCCCceeee
Q 023703 173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEHEIKDEEACREPPFRYLN 252 (278)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (278)
..+..+. +....++++.|+|||||++++.+.+.+.......+..++.+.+.+..+..+ ..+...|.|+.
T Consensus 124 fglrn~~-------d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~----~~~~~~Y~yL~ 192 (233)
T PF01209_consen 124 FGLRNFP-------DRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLL----SGDREAYRYLP 192 (233)
T ss_dssp S-GGG-S-------SHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH----------------------------
T ss_pred hhHHhhC-------CHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeeccccccccccc----ccccccccccc
Confidence 7776665 677788999999999999999998888877888777777777766444443 33446678776
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.83 E-value=2.2e-20 Score=151.86 Aligned_cols=143 Identities=19% Similarity=0.291 Sum_probs=114.3
Q ss_pred CCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCccc
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD 176 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~~ 176 (278)
+|.+|||+|||||.++..+++. |..+|+|+|+|+.|++.|++++...+..+++|+++|+..+++ +++||++.+.-.+.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglr 130 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLR 130 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhh
Confidence 7899999999999999999998 545999999999999999999998877679999999999986 68999999988888
Q ss_pred eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHh-hhhhcccccccchhhhcccccCCCCceeee
Q 023703 177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS-NLSQRRIGVSQEHEIKDEEACREPPFRYLN 252 (278)
Q Consensus 177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (278)
++. +...+|+++.|+|||||++++.+.+.+.......+. .++.+.+.|..+. ....+...|+|+.
T Consensus 131 nv~-------d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~----~~~~~~~~y~yL~ 196 (238)
T COG2226 131 NVT-------DIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGK----LVAKDAEAYEYLA 196 (238)
T ss_pred cCC-------CHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhce----eeecChHHHHHHH
Confidence 887 888899999999999999999987776654444333 4554434332222 2223345566664
No 4
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.81 E-value=1.2e-19 Score=144.98 Aligned_cols=113 Identities=31% Similarity=0.481 Sum_probs=100.7
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccC-CCccEEEeCCccc
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD 176 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~ 176 (278)
.++.+|||+|||.|.++..+|+.|+ +|+|+|+++.+|+.|+.++...++ ++++.+....+.... ++||+|+|..+++
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv-~i~y~~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGV-NIDYRQATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccc-cccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence 4788999999999999999999995 899999999999999999988876 577888888776544 8999999999999
Q ss_pred eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHH
Q 023703 177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH 219 (278)
Q Consensus 177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 219 (278)
|++ +...+++.+.+++||||.+++++.+.+.....-
T Consensus 136 Hv~-------dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~ 171 (243)
T COG2227 136 HVP-------DPESFLRACAKLVKPGGILFLSTINRTLKAYLL 171 (243)
T ss_pred ccC-------CHHHHHHHHHHHcCCCcEEEEeccccCHHHHHH
Confidence 997 778899999999999999999999988765544
No 5
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.80 E-value=8.8e-19 Score=128.25 Aligned_cols=108 Identities=31% Similarity=0.512 Sum_probs=87.6
Q ss_pred CCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccc-cCCccCCCccEEEeCC-c
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDV-LDTKLERQFQLVMDKG-T 174 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~-~~~~~~~~fD~v~~~~-~ 174 (278)
|+.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|++++...+. ++++++++|+ ......++||+|++.. .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 5679999999999999999993 335899999999999999999955443 5799999999 4455567899999998 4
Q ss_pred cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
.+++. .......+++.+.+.|+|||++++.++
T Consensus 81 ~~~~~----~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 81 LHFLL----PLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp GGGCC----HHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred ccccc----chhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 44332 114667888999999999999999864
No 6
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.77 E-value=4.2e-18 Score=131.59 Aligned_cols=107 Identities=33% Similarity=0.551 Sum_probs=93.5
Q ss_pred CCCCeEEEEecCCCHHHHHHhh-C-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc--cCCCccEEEeCC
Q 023703 98 LSSWSVLDIGTGNGLLLQELSK-Q-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKG 173 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~-~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~fD~v~~~~ 173 (278)
+++.+|||+|||+|.++..++. . +..+++|+|+|+.+++.|+++++..+++++++.++|+.+++ ..++||+|++.+
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence 3567999999999999999994 3 23589999999999999999999999888999999999965 337999999999
Q ss_pred ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703 174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 211 (278)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 211 (278)
+++++. +...+++++.++|+++|.+++..+.
T Consensus 82 ~l~~~~-------~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHFP-------DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGTS-------HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhcc-------CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 987765 6778889999999999999999877
No 7
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.77 E-value=4.8e-18 Score=136.75 Aligned_cols=106 Identities=19% Similarity=0.294 Sum_probs=91.3
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccce
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA 177 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~ 177 (278)
.++.+|||+|||+|.++..++++|. +|+|+|+|+.+++.++++....++.++++...|+.+..++++||+|++..++++
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~~~~~ 107 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEYDFILSTVVLMF 107 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCcCEEEEecchhh
Confidence 3567999999999999999999975 899999999999999999988887779999999987766778999999888755
Q ss_pred eccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
+. +.....+++++.++|+|||.+++..
T Consensus 108 ~~-----~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 108 LE-----AKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred CC-----HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 42 4467788899999999999976543
No 8
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.75 E-value=1.6e-17 Score=134.70 Aligned_cols=107 Identities=21% Similarity=0.205 Sum_probs=85.8
Q ss_pred CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhh------------CCCcceEEEEccccCCcc--CC
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR------------DGFSCIKFLVDDVLDTKL--ER 164 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~------------~~~~~~~~~~~d~~~~~~--~~ 164 (278)
++.+|||+|||.|..+..|+++|+ +|+|+|+|+.+++.+.+.... ..-.++++.++|+.+... .+
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 567999999999999999999997 899999999999986442211 011358999999998764 46
Q ss_pred CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703 165 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 211 (278)
Q Consensus 165 ~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 211 (278)
+||.|+....+.++. +..+..+++.+.++|||||.+++.+..
T Consensus 113 ~fD~i~D~~~~~~l~-----~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 113 PVDAVYDRAALIALP-----EEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred CcCEEEechhhccCC-----HHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 799999988776553 567778999999999999987776543
No 9
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.75 E-value=3.3e-17 Score=137.40 Aligned_cols=122 Identities=20% Similarity=0.293 Sum_probs=97.3
Q ss_pred cCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhh---CCCcceEEEEccccCCcc-CCCccEEE
Q 023703 97 YLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANR---DGFSCIKFLVDDVLDTKL-ERQFQLVM 170 (278)
Q Consensus 97 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~---~~~~~~~~~~~d~~~~~~-~~~fD~v~ 170 (278)
..++.+|||+|||+|.++..+++. + ..+|+|+|+|+.|++.|+++... ....+++++++|+.+.+. +++||+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 356789999999999999998876 3 24899999999999999887542 223479999999998775 57899999
Q ss_pred eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhhhh
Q 023703 171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLS 225 (278)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 225 (278)
+..+++++. +...+++++.++|||||++++.+...+.......+..++
T Consensus 151 ~~~~l~~~~-------d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~ 198 (261)
T PLN02233 151 MGYGLRNVV-------DRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWM 198 (261)
T ss_pred EecccccCC-------CHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHH
Confidence 988887665 667788999999999999999987766555444444333
No 10
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.74 E-value=1.2e-17 Score=131.38 Aligned_cols=121 Identities=26% Similarity=0.433 Sum_probs=94.9
Q ss_pred hhhhccccCCCCeEEEEecCCCHHHHHHhhCCCC-cEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccE
Q 023703 90 PVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQL 168 (278)
Q Consensus 90 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 168 (278)
++..+... ++.+|||+|||+|.++..++..+.. +|+++|+++.+++.+++++..+++.++++...|+.+...+++||+
T Consensus 23 L~~~l~~~-~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~ 101 (170)
T PF05175_consen 23 LLDNLPKH-KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDL 101 (170)
T ss_dssp HHHHHHHH-TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEE
T ss_pred HHHHHhhc-cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeE
Confidence 44444333 6779999999999999999998543 799999999999999999999998779999999988766789999
Q ss_pred EEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703 169 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 213 (278)
Q Consensus 169 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 213 (278)
|++|+++..-. ..+......+++.+.+.|+|||.+++......
T Consensus 102 Iv~NPP~~~~~--~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~ 144 (170)
T PF05175_consen 102 IVSNPPFHAGG--DDGLDLLRDFIEQARRYLKPGGRLFLVINSHL 144 (170)
T ss_dssp EEE---SBTTS--HCHHHHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred EEEccchhccc--ccchhhHHHHHHHHHHhccCCCEEEEEeecCC
Confidence 99999964221 22234567888999999999999977654433
No 11
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.74 E-value=2.7e-17 Score=129.67 Aligned_cols=106 Identities=27% Similarity=0.392 Sum_probs=87.9
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccce
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA 177 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~ 177 (278)
.+++++||+|||.|+.+..|+++|+ .|+++|+|+.+++.+++.++..++ +++..+.|+.+..+++.||+|++..++.+
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l-~i~~~~~Dl~~~~~~~~yD~I~st~v~~f 106 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGL-DIRTRVADLNDFDFPEEYDFIVSTVVFMF 106 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT--TEEEEE-BGCCBS-TTTEEEEEEESSGGG
T ss_pred cCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCc-eeEEEEecchhccccCCcCEEEEEEEecc
Confidence 3567999999999999999999998 799999999999999999888887 49999999998888889999998777766
Q ss_pred eccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
+. +.....+++.+.+.++|||++++.+.
T Consensus 107 L~-----~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 107 LQ-----RELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp S------GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CC-----HHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 54 45667788999999999999888653
No 12
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.74 E-value=3.3e-17 Score=140.33 Aligned_cols=110 Identities=27% Similarity=0.457 Sum_probs=95.1
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCcc-CCCccEEEeCCcc
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL-ERQFQLVMDKGTL 175 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~~-~~~fD~v~~~~~~ 175 (278)
.++.+|||||||+|.++..+++.|. +|+|+|+++.+++.|++++...+. .++.++++|+.+.+. +++||+|++..++
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 4567999999999999999998875 899999999999999988765443 368999999987654 5789999999999
Q ss_pred ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChH
Q 023703 176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD 215 (278)
Q Consensus 176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 215 (278)
+|+. +...+++++.++|||||.+++.+.+....
T Consensus 209 eHv~-------d~~~~L~~l~r~LkPGG~liist~nr~~~ 241 (322)
T PLN02396 209 EHVA-------NPAEFCKSLSALTIPNGATVLSTINRTMR 241 (322)
T ss_pred HhcC-------CHHHHHHHHHHHcCCCcEEEEEECCcCHH
Confidence 9886 66788899999999999999999887654
No 13
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.74 E-value=5.1e-17 Score=128.90 Aligned_cols=111 Identities=19% Similarity=0.241 Sum_probs=92.9
Q ss_pred CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccc
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD 176 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~ 176 (278)
.++.+|||+|||+|..+..++.. +..+|+++|+|+.+++.|+++.+..++++++++.+|+.+....++||+|+++..
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~-- 121 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV-- 121 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc--
Confidence 45789999999999999998864 345899999999999999999999988779999999988766678999998642
Q ss_pred eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHH
Q 023703 177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH 219 (278)
Q Consensus 177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 219 (278)
. ....+++.+.++|+|||.+++..+.....++..
T Consensus 122 --~-------~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~ 155 (187)
T PRK00107 122 --A-------SLSDLVELCLPLLKPGGRFLALKGRDPEEEIAE 155 (187)
T ss_pred --c-------CHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHH
Confidence 1 456677999999999999999987765555443
No 14
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.74 E-value=3.9e-17 Score=131.21 Aligned_cols=104 Identities=17% Similarity=0.268 Sum_probs=87.4
Q ss_pred CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCcccee
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAI 178 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~ 178 (278)
++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.++++....++ ++.+...|+...+.+++||+|++..+++++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~I~~~~~~~~~ 107 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENL-PLRTDAYDINAAALNEDYDFIFSTVVFMFL 107 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCC-CceeEeccchhccccCCCCEEEEecccccC
Confidence 457999999999999999999875 899999999999999999887776 478888888765556789999998887655
Q ss_pred ccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 179 GLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 179 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
. ......+++++.++|+|||++++..
T Consensus 108 ~-----~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 108 Q-----AGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred C-----HHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 2 3356788899999999999966653
No 15
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.73 E-value=1.9e-17 Score=117.20 Aligned_cols=94 Identities=29% Similarity=0.508 Sum_probs=81.3
Q ss_pred EEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCccceeccCC
Q 023703 104 LDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLDAIGLHP 182 (278)
Q Consensus 104 LDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~~~~~~~~ 182 (278)
||+|||+|..+..+++.+..+|+++|+++.+++.++++.... ++.+.++|..+++. +++||+|++..+++++.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~--- 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLE--- 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSSSS-TT-EEEEEEESHGGGSS---
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc---CchheeehHHhCccccccccccccccceeecc---
Confidence 899999999999999994459999999999999999988654 35699999999875 58999999999998874
Q ss_pred CChhhHHHHHHHHHhcccCCcEEEE
Q 023703 183 DGPLKRIMYWDSVSKLVAPGGLLVI 207 (278)
Q Consensus 183 ~~~~~~~~~l~~~~~~LkpgG~l~~ 207 (278)
+...+++++.|+|||||++++
T Consensus 75 ----~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 ----DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ----HHHHHHHHHHHHEEEEEEEEE
T ss_pred ----CHHHHHHHHHHHcCcCeEEeC
Confidence 888899999999999999986
No 16
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.73 E-value=9.3e-17 Score=136.13 Aligned_cols=166 Identities=15% Similarity=0.149 Sum_probs=117.6
Q ss_pred cCcchhhHHhhhhc-ccccccccCcccccccccccchhhhccc---cCCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEe
Q 023703 55 FGADVMDVVASWTK-SLCISISQGHMLNHVEDLKSEPVEENDK---YLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVD 129 (278)
Q Consensus 55 ~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D 129 (278)
-++|.+++++.+.. .+...+.++.+.++++ +...+...+.. ..++.+|||+|||+|.++..++... ..+|+++|
T Consensus 74 ~~~Pl~yi~g~~~f~g~~f~v~~~vlipr~~-te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avD 152 (284)
T TIGR03533 74 ERIPVAYLTNEAWFAGLEFYVDERVLIPRSP-IAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVD 152 (284)
T ss_pred CCCcHHHHcCCCeecCcEEEECCCCccCCCc-hHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEE
Confidence 35688888774443 3335677888886652 32222222221 2345799999999999999999872 34899999
Q ss_pred CChHHHHHHHHHhhhCCCc-ceEEEEccccCCccCCCccEEEeCCccceec--------c----------CCCChhhHHH
Q 023703 130 YSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTLDAIG--------L----------HPDGPLKRIM 190 (278)
Q Consensus 130 ~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~--------~----------~~~~~~~~~~ 190 (278)
+|+.+++.|++|+..+++. ++.++++|+.+...+++||+|++|+++-... . ...+......
T Consensus 153 is~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~ 232 (284)
T TIGR03533 153 ISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRR 232 (284)
T ss_pred CCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHH
Confidence 9999999999999988874 5999999987644456899999998863211 0 1122334567
Q ss_pred HHHHHHhcccCCcEEEEEecCCChHHHHHHHh
Q 023703 191 YWDSVSKLVAPGGLLVITSCNSTKDELVHEVS 222 (278)
Q Consensus 191 ~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 222 (278)
+++.+.++|+|||.+++.... ..+.....+.
T Consensus 233 il~~a~~~L~~gG~l~~e~g~-~~~~v~~~~~ 263 (284)
T TIGR03533 233 ILAEAADHLNENGVLVVEVGN-SMEALEEAYP 263 (284)
T ss_pred HHHHHHHhcCCCCEEEEEECc-CHHHHHHHHH
Confidence 889999999999999988775 3344444444
No 17
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.72 E-value=9.5e-17 Score=140.02 Aligned_cols=167 Identities=16% Similarity=0.184 Sum_probs=120.7
Q ss_pred ccccCcchhhHHhh---hhcccccccccCcccccccccccchhhh-ccccCCCCeEEEEecCCCHHHHHHhhC-CCCcEE
Q 023703 52 EVWFGADVMDVVAS---WTKSLCISISQGHMLNHVEDLKSEPVEE-NDKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLT 126 (278)
Q Consensus 52 ~~~~~~~~~~~~~~---w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~ 126 (278)
+|--++|.+++++. |..++ .+.++.+.|++ +++. ++.. +....++.+|||+|||+|.++..++.. +..+|+
T Consensus 204 RR~~gePlqYIlG~~~F~G~~f--~V~p~vLIPRp-eTE~-LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~Vt 279 (423)
T PRK14966 204 RRLNGEPVAYILGVREFYGRRF--AVNPNVLIPRP-ETEH-LVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVR 279 (423)
T ss_pred HHHcCCCceeEeeeeeecCcEE--EeCCCccCCCc-cHHH-HHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEE
Confidence 44467788887774 33333 67777777654 2222 3333 334455679999999999999998875 345899
Q ss_pred EEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc--cCCCccEEEeCCcccee------------------ccCCCChh
Q 023703 127 GVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKGTLDAI------------------GLHPDGPL 186 (278)
Q Consensus 127 ~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~fD~v~~~~~~~~~------------------~~~~~~~~ 186 (278)
++|+|+.+++.|++|++.++. +++++++|+.+.. ..++||+|++|+++-.- .-..++..
T Consensus 280 AVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~ 358 (423)
T PRK14966 280 ASDISPPALETARKNAADLGA-RVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLS 358 (423)
T ss_pred EEECCHHHHHHHHHHHHHcCC-cEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHH
Confidence 999999999999999988875 7999999997643 24679999999987211 01123334
Q ss_pred hHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhh
Q 023703 187 KRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN 223 (278)
Q Consensus 187 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 223 (278)
....+++.+.+.|+|||.+++.......+.....+.+
T Consensus 359 ~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~ 395 (423)
T PRK14966 359 CIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAE 395 (423)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHH
Confidence 4567888889999999999988877666666665554
No 18
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.72 E-value=1.3e-16 Score=126.30 Aligned_cols=114 Identities=18% Similarity=0.254 Sum_probs=94.0
Q ss_pred CCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccce
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA 177 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~ 177 (278)
++.+|||+|||+|.++..++..+ ..+|+++|.|+.+++.++++.+..++++++++++|+.+....++||+|+++. +.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~- 119 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LA- 119 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hh-
Confidence 47899999999999999988653 3489999999999999999998888878999999998875568999999875 22
Q ss_pred eccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhh
Q 023703 178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN 223 (278)
Q Consensus 178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 223 (278)
....+++.+.++|+|||.+++........+.....+.
T Consensus 120 ---------~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~ 156 (181)
T TIGR00138 120 ---------SLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRK 156 (181)
T ss_pred ---------CHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHh
Confidence 3345668889999999999999877776666665544
No 19
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.71 E-value=1.9e-16 Score=128.89 Aligned_cols=104 Identities=21% Similarity=0.190 Sum_probs=83.5
Q ss_pred CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhh------------CCCcceEEEEccccCCccC--C
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR------------DGFSCIKFLVDDVLDTKLE--R 164 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~------------~~~~~~~~~~~d~~~~~~~--~ 164 (278)
++.+|||+|||.|..+..|+++|+ +|+|+|+|+.+++.+.+.... ....++++.++|+.++... +
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 567999999999999999999997 899999999999987432110 0113589999999987542 6
Q ss_pred CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703 165 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 208 (278)
Q Consensus 165 ~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 208 (278)
.||.|+....+.++. +..+..+++.+.++|+|||++++.
T Consensus 116 ~fd~v~D~~~~~~l~-----~~~R~~~~~~l~~lL~pgG~~~l~ 154 (218)
T PRK13255 116 DVDAVYDRAALIALP-----EEMRERYVQQLAALLPAGCRGLLV 154 (218)
T ss_pred CeeEEEehHhHhhCC-----HHHHHHHHHHHHHHcCCCCeEEEE
Confidence 899999988776654 667788999999999999975554
No 20
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.71 E-value=1.1e-16 Score=134.12 Aligned_cols=108 Identities=24% Similarity=0.356 Sum_probs=93.6
Q ss_pred CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCc--cCCCccEEEeCCcc
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK--LERQFQLVMDKGTL 175 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~--~~~~fD~v~~~~~~ 175 (278)
++.+|||+|||+|.++..++..+. +|+++|+|+.+++.|+++....++. +++++++|+.+.. .+++||+|++..++
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 457999999999999999999975 8999999999999999999887763 5899999997753 35789999999998
Q ss_pred ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703 176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK 214 (278)
Q Consensus 176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 214 (278)
+++. +...+++++.++|||||.+++...+...
T Consensus 123 ~~~~-------~~~~~l~~~~~~LkpgG~l~i~~~n~~~ 154 (255)
T PRK11036 123 EWVA-------DPKSVLQTLWSVLRPGGALSLMFYNANG 154 (255)
T ss_pred HhhC-------CHHHHHHHHHHHcCCCeEEEEEEECccH
Confidence 8775 5567889999999999999998777654
No 21
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.71 E-value=2.4e-16 Score=130.23 Aligned_cols=111 Identities=17% Similarity=0.315 Sum_probs=93.2
Q ss_pred cCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCC
Q 023703 97 YLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKG 173 (278)
Q Consensus 97 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~ 173 (278)
..++.+|||+|||+|.++..+++. + ..+|+|+|+|+.+++.+++++...+.++++++.+|..+.+. +++||+|++..
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 122 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGF 122 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEec
Confidence 356789999999999999999876 3 24899999999999999999987777789999999987654 57899999987
Q ss_pred ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703 174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK 214 (278)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 214 (278)
+++++. +...+++++.++|+|||.+++.+...+.
T Consensus 123 ~l~~~~-------~~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 156 (231)
T TIGR02752 123 GLRNVP-------DYMQVLREMYRVVKPGGKVVCLETSQPT 156 (231)
T ss_pred ccccCC-------CHHHHHHHHHHHcCcCeEEEEEECCCCC
Confidence 776554 5567889999999999999988755443
No 22
>PLN02244 tocopherol O-methyltransferase
Probab=99.71 E-value=1.7e-16 Score=138.09 Aligned_cols=106 Identities=24% Similarity=0.396 Sum_probs=92.3
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCcc-CCCccEEEeCCcc
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL-ERQFQLVMDKGTL 175 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~-~~~fD~v~~~~~~ 175 (278)
.++.+|||||||+|.++..+++....+|+|+|+|+.+++.++++....++. ++.++++|+.+.++ +++||+|++..++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 567899999999999999999872248999999999999999998887764 59999999988764 5789999999888
Q ss_pred ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
+|+. +...+++++.++|||||.+++.+.
T Consensus 197 ~h~~-------d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 197 EHMP-------DKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred hccC-------CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 8775 667888999999999999999764
No 23
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.71 E-value=6.7e-17 Score=133.79 Aligned_cols=115 Identities=21% Similarity=0.332 Sum_probs=100.8
Q ss_pred ccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCccCCCccEEEeC
Q 023703 94 NDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDK 172 (278)
Q Consensus 94 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~ 172 (278)
..++.+|.+|||||||.|.+++.+|++-..+|+|+++|+++.+.+++++...|++ +++++..|..+.. ++||-|++-
T Consensus 67 kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~--e~fDrIvSv 144 (283)
T COG2230 67 KLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE--EPFDRIVSV 144 (283)
T ss_pred hcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc--cccceeeeh
Confidence 3567899999999999999999999993249999999999999999999999997 6999999998754 459999999
Q ss_pred CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChH
Q 023703 173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD 215 (278)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 215 (278)
+.|+|+. ......+++.+.++|+|||++++.+...+..
T Consensus 145 gmfEhvg-----~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~ 182 (283)
T COG2230 145 GMFEHVG-----KENYDDFFKKVYALLKPGGRMLLHSITGPDQ 182 (283)
T ss_pred hhHHHhC-----cccHHHHHHHHHhhcCCCceEEEEEecCCCc
Confidence 9999986 4467889999999999999999987655543
No 24
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.71 E-value=5.6e-17 Score=136.10 Aligned_cols=113 Identities=23% Similarity=0.374 Sum_probs=89.0
Q ss_pred cccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCccCCCccEEEeC
Q 023703 95 DKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDK 172 (278)
Q Consensus 95 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~fD~v~~~ 172 (278)
..+++|.+|||||||.|.++..++++ |+ +|+|+++|++..+.+++++...|+.+ +++...|..+.+ .+||.|++.
T Consensus 58 ~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~--~~fD~IvSi 134 (273)
T PF02353_consen 58 LGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP--GKFDRIVSI 134 (273)
T ss_dssp TT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----S-SEEEEE
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC--CCCCEEEEE
Confidence 45689999999999999999999999 76 89999999999999999999999864 999999988654 499999999
Q ss_pred CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChH
Q 023703 173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD 215 (278)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 215 (278)
+.++|+. ......+++++.++|||||++++........
T Consensus 135 ~~~Ehvg-----~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~ 172 (273)
T PF02353_consen 135 EMFEHVG-----RKNYPAFFRKISRLLKPGGRLVLQTITHRDP 172 (273)
T ss_dssp SEGGGTC-----GGGHHHHHHHHHHHSETTEEEEEEEEEE--H
T ss_pred echhhcC-----hhHHHHHHHHHHHhcCCCcEEEEEecccccc
Confidence 9999884 4577889999999999999999876555443
No 25
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.70 E-value=2.3e-16 Score=126.34 Aligned_cols=150 Identities=14% Similarity=0.211 Sum_probs=117.6
Q ss_pred CCCCeEEEEecCCCHHHHHHhhC-CC------CcEEEEeCChHHHHHHHHHhhhCCCc---ceEEEEccccCCcc-CCCc
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQ-GF------SDLTGVDYSEDAINLAQSLANRDGFS---CIKFLVDDVLDTKL-ERQF 166 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~-~~------~~v~~~D~s~~~i~~a~~~~~~~~~~---~~~~~~~d~~~~~~-~~~f 166 (278)
.++.++||++||||.++..+.++ +. .+|+.+|+||.+++.++++.+..++. .+.++.+|+.++++ +.+|
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 46689999999999999998886 22 58999999999999999999766553 38899999999986 5889
Q ss_pred cEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhhhhhcccccccchhhhcccccCCC
Q 023703 167 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEHEIKDEEACREP 246 (278)
Q Consensus 167 D~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (278)
|.......+..++ ++.+.+++++|+|||||++.+..++....+.+..+..-+.....+ .+..+..++..
T Consensus 179 D~yTiafGIRN~t-------h~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~Vlp----vlG~~iagd~~ 247 (296)
T KOG1540|consen 179 DAYTIAFGIRNVT-------HIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLP----VLGEIIAGDRK 247 (296)
T ss_pred eeEEEecceecCC-------CHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhc----hhhHhhhhhHh
Confidence 9998877776665 778888999999999999999999988866666665433333333 34455566667
Q ss_pred Cceeee-eecCCc
Q 023703 247 PFRYLN-HVRTYP 258 (278)
Q Consensus 247 ~~~~~~-~~~~~~ 258 (278)
.|+|+. .++.+|
T Consensus 248 sYqYLveSI~rfp 260 (296)
T KOG1540|consen 248 SYQYLVESIRRFP 260 (296)
T ss_pred hhhhHHhhhhcCC
Confidence 888876 344444
No 26
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.70 E-value=4.3e-16 Score=132.68 Aligned_cols=104 Identities=20% Similarity=0.351 Sum_probs=90.0
Q ss_pred CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCcccee
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAI 178 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~ 178 (278)
++.+|||+|||+|..+..++..|. +|+|+|+|+.+++.+++++...++ ++++...|+.....+++||+|++..+++++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASIQEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcccccCCccEEEEcchhhhC
Confidence 456999999999999999999875 899999999999999999988887 788999998876667899999998887655
Q ss_pred ccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 179 GLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 179 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
. ......+++++.++|+|||.+++..
T Consensus 198 ~-----~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 198 N-----RERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred C-----HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2 3466788899999999999977653
No 27
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.70 E-value=3.7e-16 Score=132.80 Aligned_cols=170 Identities=16% Similarity=0.193 Sum_probs=120.5
Q ss_pred ccccCcchhhHHhhhhc-ccccccccCcccccccccccchhhhccc---cCCCCeEEEEecCCCHHHHHHhhCC-CCcEE
Q 023703 52 EVWFGADVMDVVASWTK-SLCISISQGHMLNHVEDLKSEPVEENDK---YLSSWSVLDIGTGNGLLLQELSKQG-FSDLT 126 (278)
Q Consensus 52 ~~~~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~ 126 (278)
++.-+.|.+++++.+.. .....+..+.+.|+++ +...+...+.. ..+..+|||+|||+|.++..++... ..+|+
T Consensus 64 ~r~~~~pl~yi~g~~~f~g~~f~v~~~vliPr~e-te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~ 142 (284)
T TIGR00536 64 RRVKGVPVAYLLGSKEFYGLEFFVNEHVLIPRPE-TEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVI 142 (284)
T ss_pred HHHcCCCHHHHhCcceEcCeEEEECCCCcCCCCc-cHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEE
Confidence 44556888888874442 2224677777776652 22222222211 2223689999999999999999873 35899
Q ss_pred EEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCccCCCccEEEeCCccceec------------------cCCCChhh
Q 023703 127 GVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKGTLDAIG------------------LHPDGPLK 187 (278)
Q Consensus 127 ~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~------------------~~~~~~~~ 187 (278)
++|+|+.+++.|++|+..+++.+ +.++++|+.+.....+||+|++|+++-.-. ...++...
T Consensus 143 avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~ 222 (284)
T TIGR00536 143 AVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNI 222 (284)
T ss_pred EEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHH
Confidence 99999999999999999888754 999999998754345899999998763211 01123345
Q ss_pred HHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHh
Q 023703 188 RIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS 222 (278)
Q Consensus 188 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 222 (278)
...++..+.++|+|||.+++.............+.
T Consensus 223 ~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~ 257 (284)
T TIGR00536 223 LRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLR 257 (284)
T ss_pred HHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHH
Confidence 67888999999999999999988776666555443
No 28
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.70 E-value=1.2e-16 Score=134.61 Aligned_cols=171 Identities=20% Similarity=0.297 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHhhchhccCCccccccCcchhhHHhhhhcccccccccCccccccc-ccccchhhhccc-cCCCCeEEEEe
Q 023703 30 QSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVE-DLKSEPVEENDK-YLSSWSVLDIG 107 (278)
Q Consensus 30 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~vLDiG 107 (278)
.+-|...|++...++. .+++++-.|.-+..+.-.....+.+.+|.-+.+.. .+.+.+++.+.. ..++.+|||+|
T Consensus 94 ~~dW~~~Wk~~~~P~~----vg~~~~I~P~w~~~~~~~~~~~I~idPg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDvG 169 (295)
T PF06325_consen 94 EEDWEEAWKKYFKPIR----VGDRLVIVPSWEEYPEPPDEIVIEIDPGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDVG 169 (295)
T ss_dssp HHCHHHHHHHH---EE----ECTTEEEEETT----SSTTSEEEEESTTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEES
T ss_pred cccchHHHHhcCccEE----ECCcEEEECCCcccCCCCCcEEEEECCCCcccCCCCHHHHHHHHHHHHhccCCCEEEEeC
Confidence 4567777776555553 22222211111111111233345677777666663 566667777754 46788999999
Q ss_pred cCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccceeccCCCChhh
Q 023703 108 TGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLK 187 (278)
Q Consensus 108 cG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~ 187 (278)
||||.+++..+..|+.+|+|+|++|.+++.|++|+..|++.. .+......+ ...++||+|++|-..+ -
T Consensus 170 ~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~~~~~-~~~~~~dlvvANI~~~----------v 237 (295)
T PF06325_consen 170 CGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVED-RIEVSLSED-LVEGKFDLVVANILAD----------V 237 (295)
T ss_dssp -TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TT-CEEESCTSC-TCCS-EEEEEEES-HH----------H
T ss_pred CcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCe-eEEEEEecc-cccccCCEEEECCCHH----------H
Confidence 999999999999998899999999999999999999999865 333322222 2348899999975543 3
Q ss_pred HHHHHHHHHhcccCCcEEEEEecCCChHH
Q 023703 188 RIMYWDSVSKLVAPGGLLVITSCNSTKDE 216 (278)
Q Consensus 188 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 216 (278)
...++..+.++|+|||.++++..-....+
T Consensus 238 L~~l~~~~~~~l~~~G~lIlSGIl~~~~~ 266 (295)
T PF06325_consen 238 LLELAPDIASLLKPGGYLILSGILEEQED 266 (295)
T ss_dssp HHHHHHHCHHHEEEEEEEEEEEEEGGGHH
T ss_pred HHHHHHHHHHhhCCCCEEEEccccHHHHH
Confidence 34566889999999999999976555443
No 29
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=3.5e-16 Score=131.92 Aligned_cols=167 Identities=21% Similarity=0.298 Sum_probs=119.9
Q ss_pred cCcchhhHHhhhh-cccccccccCcccccccccccchhhhccccCCCC-eEEEEecCCCHHHHHHhhCC-CCcEEEEeCC
Q 023703 55 FGADVMDVVASWT-KSLCISISQGHMLNHVEDLKSEPVEENDKYLSSW-SVLDIGTGNGLLLQELSKQG-FSDLTGVDYS 131 (278)
Q Consensus 55 ~~~~~~~~~~~w~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s 131 (278)
-+.|.+++++.+. ..+.....++.+.|++ ++...+...+....... +|||+|||||.+++.++... ..+|+|+|+|
T Consensus 65 ~~~P~~yi~g~~~f~gl~~~v~~~vliPr~-dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis 143 (280)
T COG2890 65 EGEPVAYILGSAEFGGLRFKVDEGVLIPRP-DTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDIS 143 (280)
T ss_pred CCCCHhHhhccCeecceeeeeCCCceecCC-chHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECC
Confidence 4556677766322 2333478888888876 33322222111221222 79999999999999999984 3499999999
Q ss_pred hHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccceec------------------cCCCChhhHHHHHH
Q 023703 132 EDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIG------------------LHPDGPLKRIMYWD 193 (278)
Q Consensus 132 ~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~------------------~~~~~~~~~~~~l~ 193 (278)
+.+++.|++|+..+++.++.++++|+++.. .++||+|++|++|---. ...++......++.
T Consensus 144 ~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~-~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~ 222 (280)
T COG2890 144 PDALALARENAERNGLVRVLVVQSDLFEPL-RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILG 222 (280)
T ss_pred HHHHHHHHHHHHHcCCccEEEEeeeccccc-CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHH
Confidence 999999999999999866777777877643 34999999999872111 11234456678889
Q ss_pred HHHhcccCCcEEEEEecCCChHHHHHHHhh
Q 023703 194 SVSKLVAPGGLLVITSCNSTKDELVHEVSN 223 (278)
Q Consensus 194 ~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 223 (278)
++.+.|+|||.+++.......+.....+..
T Consensus 223 ~a~~~l~~~g~l~le~g~~q~~~v~~~~~~ 252 (280)
T COG2890 223 EAPDILKPGGVLILEIGLTQGEAVKALFED 252 (280)
T ss_pred hhHHHcCCCcEEEEEECCCcHHHHHHHHHh
Confidence 999999999999999887777777776654
No 30
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.69 E-value=6.2e-16 Score=132.25 Aligned_cols=164 Identities=15% Similarity=0.150 Sum_probs=115.7
Q ss_pred cCcchhhHHhhhhc-ccccccccCcccccccccccchhhhccc---cCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEe
Q 023703 55 FGADVMDVVASWTK-SLCISISQGHMLNHVEDLKSEPVEENDK---YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVD 129 (278)
Q Consensus 55 ~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D 129 (278)
-++|.+++++.|.. .+...+.++.++|++ .+...+...+.. ..++.+|||+|||+|.++..++.. +..+|+++|
T Consensus 86 ~~~Pl~yi~g~~~F~g~~f~v~~~vlipr~-~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avD 164 (307)
T PRK11805 86 ERIPAAYLTNEAWFCGLEFYVDERVLVPRS-PIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVD 164 (307)
T ss_pred CCccHHHHcCcceEcCcEEEECCCCcCCCC-chHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEe
Confidence 47888888885542 233467778888655 332222222221 112368999999999999999987 335899999
Q ss_pred CChHHHHHHHHHhhhCCCc-ceEEEEccccCCccCCCccEEEeCCccceec------------------cCCCChhhHHH
Q 023703 130 YSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTLDAIG------------------LHPDGPLKRIM 190 (278)
Q Consensus 130 ~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~------------------~~~~~~~~~~~ 190 (278)
+|+.+++.|++|++.+++. +++++++|+.+..++++||+|++++++-... ....+......
T Consensus 165 is~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~ 244 (307)
T PRK11805 165 ISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRR 244 (307)
T ss_pred CCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHH
Confidence 9999999999999988874 4999999987644456899999998763210 01123344567
Q ss_pred HHHHHHhcccCCcEEEEEecCCChHHHHHH
Q 023703 191 YWDSVSKLVAPGGLLVITSCNSTKDELVHE 220 (278)
Q Consensus 191 ~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 220 (278)
+++.+.++|+|||.+++..... .......
T Consensus 245 i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~ 273 (307)
T PRK11805 245 ILAEAPDYLTEDGVLVVEVGNS-RVHLEEA 273 (307)
T ss_pred HHHHHHHhcCCCCEEEEEECcC-HHHHHHH
Confidence 8899999999999999976654 3344443
No 31
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.69 E-value=3.4e-16 Score=142.42 Aligned_cols=171 Identities=12% Similarity=0.174 Sum_probs=122.2
Q ss_pred ccccCcchhhHHhhhhc-ccccccccCcccccccccccch---hhhccc-----------------------cCCCCeEE
Q 023703 52 EVWFGADVMDVVASWTK-SLCISISQGHMLNHVEDLKSEP---VEENDK-----------------------YLSSWSVL 104 (278)
Q Consensus 52 ~~~~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----------------------~~~~~~vL 104 (278)
+|--++|.+++++.|.. .+...+.++.++|+++ ++..+ +..+.. ..++.+||
T Consensus 65 rr~~~ePlqYI~G~~~F~g~~f~V~~~VLIPRpe-TE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VL 143 (506)
T PRK01544 65 RRLKHEPIAYITGVKEFYSREFIVNKHVLIPRSD-TEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNIL 143 (506)
T ss_pred HHHcCCCHHHHhCcCEEcCcEEEeCCCcccCCCc-HHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEE
Confidence 44467899999885442 2234799999999874 22212 111110 11346899
Q ss_pred EEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCccCCCccEEEeCCccceec---
Q 023703 105 DIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTLDAIG--- 179 (278)
Q Consensus 105 DiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~--- 179 (278)
|+|||+|.++..++.. +..+|+++|+|+.+++.|++|+..+++. ++.++++|+.+....++||+|++|+++-...
T Consensus 144 DlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~~~~~~ 223 (506)
T PRK01544 144 ELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYISHSEKS 223 (506)
T ss_pred EccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCCchhhh
Confidence 9999999999998875 4458999999999999999999888764 5899999987644456899999998863211
Q ss_pred ----------------cCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhh
Q 023703 180 ----------------LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN 223 (278)
Q Consensus 180 ----------------~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 223 (278)
...++......+++.+.++|+|||.+++.......+.....+..
T Consensus 224 ~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~ 283 (506)
T PRK01544 224 EMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLD 283 (506)
T ss_pred hcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHHh
Confidence 01123344567788999999999999998766666655555543
No 32
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.69 E-value=3.9e-17 Score=131.55 Aligned_cols=110 Identities=27% Similarity=0.432 Sum_probs=90.9
Q ss_pred CCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc------ceEEEEccccCCccCCCccEEEeCC
Q 023703 100 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS------CIKFLVDDVLDTKLERQFQLVMDKG 173 (278)
Q Consensus 100 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~------~~~~~~~d~~~~~~~~~fD~v~~~~ 173 (278)
|.+|||+|||+|.++..|++.|+ +|+|+|+++.+++.|++..+..... .+++.+.|+.+. .++||.|+|..
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~--~~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL--TGKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc--ccccceeeeHH
Confidence 47899999999999999999985 8999999999999999985443221 244555665543 45699999999
Q ss_pred ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHH
Q 023703 174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH 219 (278)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 219 (278)
+++|+. +...++..+.+.|||||.+++++.+.+......
T Consensus 167 vleHV~-------dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~ 205 (282)
T KOG1270|consen 167 VLEHVK-------DPQEFLNCLSALLKPNGRLFITTINRTILSFAG 205 (282)
T ss_pred HHHHHh-------CHHHHHHHHHHHhCCCCceEeeehhhhHHHhhc
Confidence 999997 888899999999999999999998887655443
No 33
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.68 E-value=9.3e-16 Score=124.32 Aligned_cols=107 Identities=17% Similarity=0.134 Sum_probs=88.8
Q ss_pred CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhh------------hCCCcceEEEEccccCCcc----
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN------------RDGFSCIKFLVDDVLDTKL---- 162 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~------------~~~~~~~~~~~~d~~~~~~---- 162 (278)
++.+||..|||.|..+..|+.+|+ +|+|+|+|+.+++.+.+... ...-.++++.++|+++++.
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~ 121 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANN 121 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccc
Confidence 457999999999999999999998 79999999999999866210 0111368999999999853
Q ss_pred CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703 163 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 211 (278)
Q Consensus 163 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 211 (278)
.++||+|+....+.+++ +..+..+++.+.++|+|||.+++.+..
T Consensus 122 ~~~fD~VyDra~~~Alp-----p~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 122 LPVFDIWYDRGAYIALP-----NDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred cCCcCeeeeehhHhcCC-----HHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 26899999988887775 668889999999999999999887653
No 34
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.68 E-value=9.1e-16 Score=127.79 Aligned_cols=165 Identities=16% Similarity=0.162 Sum_probs=115.1
Q ss_pred ccCcchhhHHhhhhc-ccccccccCcccccccccccchhhhc----cccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEE
Q 023703 54 WFGADVMDVVASWTK-SLCISISQGHMLNHVEDLKSEPVEEN----DKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTG 127 (278)
Q Consensus 54 ~~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~ 127 (278)
--++|.+++++.+.. .....+.++.+.|+. .+ ..++..+ ....++.+|||+|||+|.++..++.. +..+|++
T Consensus 38 ~~~~Pl~yi~g~~~f~g~~~~v~~~vf~pr~-~T-e~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~ 115 (251)
T TIGR03704 38 VAGLPLEHVLGWAEFCGLRIAVDPGVFVPRR-RT-EFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHA 115 (251)
T ss_pred HcCCCHHHhcccCeEcCeEEEECCCCcCCCc-cH-HHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEE
Confidence 356788888885553 233467777777543 22 2233322 11223458999999999999999876 3348999
Q ss_pred EeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc---CCCccEEEeCCccceec----c---------------CCCCh
Q 023703 128 VDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---ERQFQLVMDKGTLDAIG----L---------------HPDGP 185 (278)
Q Consensus 128 ~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~---~~~fD~v~~~~~~~~~~----~---------------~~~~~ 185 (278)
+|+|+.+++.|++|++.++ ++++++|+.+... .++||+|++|+++.... + ..++.
T Consensus 116 vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl 192 (251)
T TIGR03704 116 ADIDPAAVRCARRNLADAG---GTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGL 192 (251)
T ss_pred EECCHHHHHHHHHHHHHcC---CEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHH
Confidence 9999999999999998765 4788999876432 36799999999874211 0 11223
Q ss_pred hhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhh
Q 023703 186 LKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN 223 (278)
Q Consensus 186 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 223 (278)
.....+++.+.++|+|||.+++........+....+.+
T Consensus 193 ~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~ 230 (251)
T TIGR03704 193 DVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFAR 230 (251)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHH
Confidence 33457888899999999999999877766666665544
No 35
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=3.9e-16 Score=130.33 Aligned_cols=139 Identities=22% Similarity=0.312 Sum_probs=105.3
Q ss_pred cccccccCcccccc-cccccchhhhccc-cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC
Q 023703 70 LCISISQGHMLNHV-EDLKSEPVEENDK-YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF 147 (278)
Q Consensus 70 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~ 147 (278)
....+++|.-+.+. .++...++..+.. ..++.+|||+|||||.+++..+..|+.+|+|+|++|.+++.|+.|+..|++
T Consensus 131 ~~i~lDPGlAFGTG~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v 210 (300)
T COG2264 131 LNIELDPGLAFGTGTHPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGV 210 (300)
T ss_pred eEEEEccccccCCCCChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCC
Confidence 33566777666655 3466666776644 468899999999999999999999988999999999999999999999987
Q ss_pred cc-eEEEEccccCCccCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHH
Q 023703 148 SC-IKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELV 218 (278)
Q Consensus 148 ~~-~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~ 218 (278)
.. +.....+.......++||+|++|=..+ -...+...+.+.|||||.++++..-....+..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~DvIVANILA~----------vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V 272 (300)
T COG2264 211 ELLVQAKGFLLLEVPENGPFDVIVANILAE----------VLVELAPDIKRLLKPGGRLILSGILEDQAESV 272 (300)
T ss_pred chhhhcccccchhhcccCcccEEEehhhHH----------HHHHHHHHHHHHcCCCceEEEEeehHhHHHHH
Confidence 54 333334443333457999999974322 33466699999999999999998655554433
No 36
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.68 E-value=2.6e-16 Score=122.73 Aligned_cols=105 Identities=23% Similarity=0.284 Sum_probs=83.8
Q ss_pred CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCcccee
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAI 178 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~ 178 (278)
.-.++||+|||.|.++..|+.+ +.+++++|+|+.+++.|++++... ++|++++.|+.+..++++||+|+...++.++
T Consensus 43 ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~--~~V~~~~~dvp~~~P~~~FDLIV~SEVlYYL 119 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGL--PHVEWIQADVPEFWPEGRFDLIVLSEVLYYL 119 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT---SS-EEEEEEES-GGGS
T ss_pred ccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCC--CCeEEEECcCCCCCCCCCeeEEEEehHhHcC
Confidence 3458999999999999999999 569999999999999999998754 6899999999998889999999999888766
Q ss_pred ccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 179 GLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 179 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
. +..+...++..+...|+|||.+++.+.
T Consensus 120 ~----~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 120 D----DAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp S----SHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred C----CHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 3 234677888999999999999999876
No 37
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.67 E-value=3.6e-16 Score=131.04 Aligned_cols=100 Identities=19% Similarity=0.219 Sum_probs=85.3
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccc
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD 176 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~ 176 (278)
.++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.|+++ +++++++|+.+....++||+|+++.+++
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~fD~v~~~~~l~ 100 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWKPKPDTDVVVSNAALQ 100 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCCCCCCceEEEEehhhh
Confidence 466899999999999999999872 24899999999999999762 5788999998775568999999999998
Q ss_pred eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703 177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 211 (278)
Q Consensus 177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 211 (278)
++. +...+++++.++|||||.+++..+.
T Consensus 101 ~~~-------d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 101 WVP-------EHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred hCC-------CHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 875 5577889999999999999987543
No 38
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.67 E-value=9.7e-16 Score=127.74 Aligned_cols=106 Identities=20% Similarity=0.280 Sum_probs=88.3
Q ss_pred CCCCeEEEEecCCCHHHHHHhhC---CCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCccCCCccEEEeCC
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKG 173 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~ 173 (278)
.++.+|||+|||+|..+..+++. +..+++|+|+|+.|++.|++++...+.. +++++++|+.+.+.+ .+|+|+++.
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~-~~D~vv~~~ 133 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE-NASMVVLNF 133 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC-CCCEEehhh
Confidence 46789999999999999888762 3358999999999999999999876654 599999999876543 599999988
Q ss_pred ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
+++++. ......+++++.++|||||.+++.+
T Consensus 134 ~l~~l~-----~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 134 TLQFLE-----PSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred HHHhCC-----HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 776653 3356778899999999999999986
No 39
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.66 E-value=1e-15 Score=128.57 Aligned_cols=102 Identities=22% Similarity=0.353 Sum_probs=87.3
Q ss_pred CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccc
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD 176 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~ 176 (278)
.++.+|||||||+|.++..++.. +..+|+|+|+|+.+++.|+++. +++.++.+|+.....+.+||+|+++.+++
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~~~~~fD~v~~~~~l~ 104 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQPPQALDLIFANASLQ 104 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccCCCCCccEEEEccChh
Confidence 46779999999999999999886 3358999999999999999874 46889999998766667999999999988
Q ss_pred eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703 177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 211 (278)
Q Consensus 177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 211 (278)
++. +...+++++.++|||||.+++..+.
T Consensus 105 ~~~-------d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 105 WLP-------DHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred hCC-------CHHHHHHHHHHhcCCCcEEEEECCC
Confidence 775 5667889999999999999997543
No 40
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.66 E-value=9.7e-16 Score=132.03 Aligned_cols=105 Identities=22% Similarity=0.284 Sum_probs=87.3
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCC-CcceEEEEccccCCccCCCccEEEeCCccc
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVDDVLDTKLERQFQLVMDKGTLD 176 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~-~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~ 176 (278)
.++++|||||||+|.++..++..|...|+|+|+|+.++..++......+ -.++.++.+|+.+.+.+++||+|++.++++
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl~ 200 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLY 200 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChhh
Confidence 4678999999999999999999876679999999999876554333222 136899999998877778899999999987
Q ss_pred eeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
|+. +...++++++++|+|||.+++.+
T Consensus 201 H~~-------dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 201 HRR-------SPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred ccC-------CHHHHHHHHHHhcCCCcEEEEEE
Confidence 764 56778899999999999999875
No 41
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.66 E-value=2.9e-15 Score=118.92 Aligned_cols=123 Identities=16% Similarity=0.265 Sum_probs=96.6
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccce
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA 177 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~ 177 (278)
.++.+|||+|||+|.++..++..+. +|+++|+|+.+++.+++++..++. ++++..+|+.+.. .++||+|+++.++..
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~-~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGV-RGKFDVILFNPPYLP 94 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccccc-CCcccEEEECCCCCC
Confidence 4567899999999999999999875 899999999999999999988775 6889999987653 458999999998854
Q ss_pred eccCC--------------CChhhHHHHHHHHHhcccCCcEEEEEecCCC-hHHHHHHHhh
Q 023703 178 IGLHP--------------DGPLKRIMYWDSVSKLVAPGGLLVITSCNST-KDELVHEVSN 223 (278)
Q Consensus 178 ~~~~~--------------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~~ 223 (278)
..-.. .+......+++++.++|+|||.+++...... ..+....+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~ 155 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDE 155 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHh
Confidence 43110 1112246788999999999999999876555 5555555543
No 42
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.66 E-value=2.5e-16 Score=123.21 Aligned_cols=112 Identities=20% Similarity=0.230 Sum_probs=96.7
Q ss_pred CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccc
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD 176 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~ 176 (278)
.+..+|.|+|||+|..+..|+++ +.+.++|+|-|+.|++.|+++. ++++|..+|+.++.++.++|++++|.+++
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----p~~~f~~aDl~~w~p~~~~dllfaNAvlq 103 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----PDATFEEADLRTWKPEQPTDLLFANAVLQ 103 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----CCCceecccHhhcCCCCccchhhhhhhhh
Confidence 34569999999999999999998 5569999999999999998765 68999999999999999999999999999
Q ss_pred eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHH
Q 023703 177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV 221 (278)
Q Consensus 177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 221 (278)
+++ +...++.++...|.|||.+.+.-+..-.+.....+
T Consensus 104 Wlp-------dH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~m 141 (257)
T COG4106 104 WLP-------DHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLM 141 (257)
T ss_pred hcc-------ccHHHHHHHHHhhCCCceEEEECCCccCchhHHHH
Confidence 997 66677899999999999999987765554444433
No 43
>PRK14967 putative methyltransferase; Provisional
Probab=99.66 E-value=2.8e-15 Score=123.12 Aligned_cols=125 Identities=25% Similarity=0.273 Sum_probs=95.8
Q ss_pred cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccc
Q 023703 97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD 176 (278)
Q Consensus 97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~ 176 (278)
..++.+|||+|||+|.++..++..+..+++++|+|+.+++.+++++..+++ ++.++.+|+.+...+++||+|++++++.
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhhccCCCeeEEEECCCCC
Confidence 456789999999999999999987655899999999999999999988775 6889999987754567899999998764
Q ss_pred eec--------------cCCCChhhHHHHHHHHHhcccCCcEEEEEecCC-ChHHHHHHHh
Q 023703 177 AIG--------------LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS-TKDELVHEVS 222 (278)
Q Consensus 177 ~~~--------------~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~~~~ 222 (278)
... ....+......+++++.++|||||++++..... ...+....+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~ 173 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLS 173 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHH
Confidence 221 011122234567889999999999999876543 4445555444
No 44
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.66 E-value=4.4e-16 Score=111.77 Aligned_cols=95 Identities=29% Similarity=0.539 Sum_probs=78.4
Q ss_pred EEEEecCCCHHHHHHhhC---CC-CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeC-Cccc
Q 023703 103 VLDIGTGNGLLLQELSKQ---GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDK-GTLD 176 (278)
Q Consensus 103 vLDiGcG~G~~~~~l~~~---~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~-~~~~ 176 (278)
|||+|||+|..+..+++. +. .+++|+|+|+.+++.++++....+. +++++++|+.+++. .++||+|++. .+++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 799999999999999876 22 5899999999999999999988765 79999999998764 6799999995 4476
Q ss_pred eeccCCCChhhHHHHHHHHHhcccCCc
Q 023703 177 AIGLHPDGPLKRIMYWDSVSKLVAPGG 203 (278)
Q Consensus 177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG 203 (278)
++. +.+...+++++.++|+|||
T Consensus 80 ~~~-----~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLS-----PEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSS-----HHHHHHHHHHHHHTEEEEE
T ss_pred CCC-----HHHHHHHHHHHHHHhCCCC
Confidence 653 6678899999999999998
No 45
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.66 E-value=3.8e-16 Score=115.16 Aligned_cols=112 Identities=25% Similarity=0.407 Sum_probs=88.9
Q ss_pred CCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCc---cCCCccEEEeCCcc
Q 023703 100 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK---LERQFQLVMDKGTL 175 (278)
Q Consensus 100 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~---~~~~fD~v~~~~~~ 175 (278)
|.+|||+|||+|.++..+++.+..+++|+|+++.+++.++.++...++ .+++++++|..+.. ..++||+|++++++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 458999999999999999998745999999999999999999999876 46999999998865 36899999999998
Q ss_pred ceecc-CCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703 176 DAIGL-HPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 211 (278)
Q Consensus 176 ~~~~~-~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 211 (278)
..... ..........+++++.++|+|||.+++..++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 53321 1111224567889999999999999988753
No 46
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.65 E-value=1.4e-15 Score=123.74 Aligned_cols=134 Identities=20% Similarity=0.251 Sum_probs=107.7
Q ss_pred hhhhccccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCcc---CC
Q 023703 90 PVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL---ER 164 (278)
Q Consensus 90 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~---~~ 164 (278)
++..........+|||+|||+|.+++.++++ ...+++++|+.+.+.+.|+++.+.+++. ++++++.|+.++.. ..
T Consensus 35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~ 114 (248)
T COG4123 35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFA 114 (248)
T ss_pred HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccccc
Confidence 3444444455789999999999999999999 5469999999999999999999998875 49999999998753 35
Q ss_pred CccEEEeCCccceeccC--C---------CChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhh
Q 023703 165 QFQLVMDKGTLDAIGLH--P---------DGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN 223 (278)
Q Consensus 165 ~fD~v~~~~~~~~~~~~--~---------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 223 (278)
+||+|+||++|...... + ........+++.+.++|||||.+.++.+.....++...+..
T Consensus 115 ~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~ 184 (248)
T COG4123 115 SFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKS 184 (248)
T ss_pred ccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHh
Confidence 69999999998644322 1 11223467889999999999999999988888777777664
No 47
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.65 E-value=1.5e-15 Score=129.58 Aligned_cols=107 Identities=16% Similarity=0.148 Sum_probs=86.5
Q ss_pred cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCC-CcceEEEEccccCCccCCCccEEEeCCcc
Q 023703 97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVDDVLDTKLERQFQLVMDKGTL 175 (278)
Q Consensus 97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~-~~~~~~~~~d~~~~~~~~~fD~v~~~~~~ 175 (278)
..++++|||+|||+|.++..++..|...|+|+|+|+.++..++...+..+ ..++.+..+++.+.+...+||+|++.+++
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gvL 198 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVL 198 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcchh
Confidence 35678999999999999999998876689999999999876543222111 13578888888887666789999999999
Q ss_pred ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
.|+. +...++++++++|||||.+++.+.
T Consensus 199 ~H~~-------dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 199 YHRK-------SPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred hccC-------CHHHHHHHHHHhcCCCCEEEEEEE
Confidence 8775 666788999999999999999753
No 48
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.65 E-value=2.9e-15 Score=130.55 Aligned_cols=108 Identities=16% Similarity=0.162 Sum_probs=88.4
Q ss_pred CCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCC---cceEEEEccccCCccCCCccEEEeCCcc
Q 023703 100 SWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGF---SCIKFLVDDVLDTKLERQFQLVMDKGTL 175 (278)
Q Consensus 100 ~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~---~~~~~~~~d~~~~~~~~~fD~v~~~~~~ 175 (278)
+.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.|+++++.++. .++++...|+.+...+++||+|++|++|
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fDlIlsNPPf 308 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPPF 308 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEEEEEECcCc
Confidence 4699999999999999999873 35899999999999999999987753 3588999998765445689999999999
Q ss_pred ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
+... .........+++.+.++|+|||.++++.
T Consensus 309 h~~~--~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 309 HQQH--ALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred ccCc--cCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 6432 1223345678899999999999999985
No 49
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.64 E-value=3.9e-15 Score=126.69 Aligned_cols=131 Identities=21% Similarity=0.270 Sum_probs=96.0
Q ss_pred cccccCccccccc-ccccchhhhccc-cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc
Q 023703 72 ISISQGHMLNHVE-DLKSEPVEENDK-YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC 149 (278)
Q Consensus 72 ~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~ 149 (278)
..+.++..+.+.. .+...++..+.. ..++.+|||+|||+|.++..++..|..+|+++|+|+.+++.|++++..+++..
T Consensus 130 i~ldpg~aFgtG~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~ 209 (288)
T TIGR00406 130 IMLDPGLAFGTGTHPTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSD 209 (288)
T ss_pred EEECCCCcccCCCCHHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCc
Confidence 4555665554332 233334444432 35678999999999999999988876789999999999999999999887753
Q ss_pred -eEEEEccccCCccCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703 150 -IKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 213 (278)
Q Consensus 150 -~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 213 (278)
+.+...+... ..+++||+|+++...+ ....++.++.++|||||.++++.....
T Consensus 210 ~~~~~~~~~~~-~~~~~fDlVvan~~~~----------~l~~ll~~~~~~LkpgG~li~sgi~~~ 263 (288)
T TIGR00406 210 RLQVKLIYLEQ-PIEGKADVIVANILAE----------VIKELYPQFSRLVKPGGWLILSGILET 263 (288)
T ss_pred ceEEEeccccc-ccCCCceEEEEecCHH----------HHHHHHHHHHHHcCCCcEEEEEeCcHh
Confidence 5666666332 2357899999975432 345677999999999999999876443
No 50
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.64 E-value=2.5e-15 Score=125.48 Aligned_cols=108 Identities=22% Similarity=0.351 Sum_probs=82.5
Q ss_pred chhhhccc-cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCccCCCc
Q 023703 89 EPVEENDK-YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQF 166 (278)
Q Consensus 89 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~f 166 (278)
.++..+.. ..++.+|||+|||+|.++..++..|..+|+|+|+|+.+++.|++++..+++. .+.+..+|. +|
T Consensus 108 ~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-------~f 180 (250)
T PRK00517 108 LCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-------KA 180 (250)
T ss_pred HHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-------Cc
Confidence 34444432 4578899999999999999888887667999999999999999999888762 344433332 69
Q ss_pred cEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703 167 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 213 (278)
Q Consensus 167 D~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 213 (278)
|+|+++...+ ....++.++.++|||||.++++.....
T Consensus 181 D~Vvani~~~----------~~~~l~~~~~~~LkpgG~lilsgi~~~ 217 (250)
T PRK00517 181 DVIVANILAN----------PLLELAPDLARLLKPGGRLILSGILEE 217 (250)
T ss_pred CEEEEcCcHH----------HHHHHHHHHHHhcCCCcEEEEEECcHh
Confidence 9999874322 345667899999999999999875443
No 51
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.64 E-value=2.4e-15 Score=126.34 Aligned_cols=109 Identities=23% Similarity=0.386 Sum_probs=89.1
Q ss_pred ccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCc
Q 023703 96 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGT 174 (278)
Q Consensus 96 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~ 174 (278)
.+.++.+|||||||+|..+..++.....+|+|+|+|+.+++.|+++.... .++.+..+|+.+.+. +++||+|++..+
T Consensus 49 ~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~--~~i~~~~~D~~~~~~~~~~FD~V~s~~~ 126 (263)
T PTZ00098 49 ELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK--NKIEFEANDILKKDFPENTFDMIYSRDA 126 (263)
T ss_pred CCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC--CceEEEECCcccCCCCCCCeEEEEEhhh
Confidence 44678899999999999999888752248999999999999999987542 469999999987654 578999999776
Q ss_pred cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703 175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 211 (278)
Q Consensus 175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 211 (278)
+.|+. ..+...+++++.++|||||.+++....
T Consensus 127 l~h~~-----~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 127 ILHLS-----YADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred HHhCC-----HHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 65542 236678889999999999999998753
No 52
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.64 E-value=1.5e-15 Score=123.29 Aligned_cols=105 Identities=30% Similarity=0.375 Sum_probs=84.0
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhh------------CCCcceEEEEccccCCccC--
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR------------DGFSCIKFLVDDVLDTKLE-- 163 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~------------~~~~~~~~~~~d~~~~~~~-- 163 (278)
.++.+||..|||.|.....|+++|+ +|+|+|+|+.+++.+.+.... ....+|++.++|++++...
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~ 114 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDV 114 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCH
T ss_pred CCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhc
Confidence 4567999999999999999999997 899999999999998543221 0113578999999997653
Q ss_pred CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703 164 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 208 (278)
Q Consensus 164 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 208 (278)
++||+|+....+.+++ +..+..+.+.+.++|+|||.+++.
T Consensus 115 g~fD~iyDr~~l~Alp-----p~~R~~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 115 GKFDLIYDRTFLCALP-----PEMRERYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp HSEEEEEECSSTTTS------GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred CCceEEEEecccccCC-----HHHHHHHHHHHHHHhCCCCcEEEE
Confidence 5799999998887775 678889999999999999995444
No 53
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.64 E-value=2.4e-15 Score=125.88 Aligned_cols=101 Identities=23% Similarity=0.333 Sum_probs=85.6
Q ss_pred CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCccce
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLDA 177 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~~~ 177 (278)
++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.++++.. ...++++|+...+. +++||+|+++.++++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~ 115 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDA-----ADHYLAGDIESLPLATATFDLAWSNLAVQW 115 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccCcCCCCcEEEEEECchhhh
Confidence 46799999999999999998886 489999999999999988642 35678899988764 568999999988876
Q ss_pred eccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703 178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 212 (278)
Q Consensus 178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 212 (278)
+. +...++.++.++|+|||.++++++..
T Consensus 116 ~~-------d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 116 CG-------NLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred cC-------CHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 54 56778899999999999999998654
No 54
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.63 E-value=2.3e-15 Score=123.86 Aligned_cols=104 Identities=21% Similarity=0.350 Sum_probs=89.1
Q ss_pred CeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCccCCCccEEEeCCcccee
Q 023703 101 WSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTLDAI 178 (278)
Q Consensus 101 ~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~ 178 (278)
++|||||||+|.++..+++.. ..+|+|+|+|+.+++.+++++...++. ++.++..|+...+.+++||+|++..+++++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 379999999999999998873 348999999999999999999887764 489999999766556789999999888877
Q ss_pred ccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703 179 GLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 211 (278)
Q Consensus 179 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 211 (278)
. +...+++++.++|+|||.+++.+..
T Consensus 81 ~-------~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 81 K-------DKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred C-------CHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 5 5678889999999999999998653
No 55
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.63 E-value=3.8e-15 Score=126.11 Aligned_cols=108 Identities=17% Similarity=0.393 Sum_probs=90.8
Q ss_pred ccCCCCeEEEEecCCCHHHHHHhhC-CC-CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeC
Q 023703 96 KYLSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDK 172 (278)
Q Consensus 96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~ 172 (278)
...++.+|||+|||+|..+..++.. +. .+|+++|+++.+++.|+++....++.++++..+|+.+.+. +++||+|+++
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISN 153 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEc
Confidence 3467889999999999988777665 43 3799999999999999999988887789999999988664 5689999999
Q ss_pred CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
.++++.. +...+++++.++|||||++++...
T Consensus 154 ~v~~~~~-------d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 154 CVINLSP-------DKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred CcccCCC-------CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 8876553 456678999999999999999754
No 56
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.63 E-value=7.3e-15 Score=109.22 Aligned_cols=103 Identities=19% Similarity=0.232 Sum_probs=84.7
Q ss_pred CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc--cCCCccEEEeCCc
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKGT 174 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~fD~v~~~~~ 174 (278)
.++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++++..++.++.++..|+.... ..++||.|++...
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS 97 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCc
Confidence 45679999999999999999987 33589999999999999999998887778899999876422 3468999998654
Q ss_pred cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
.. ....+++.+.+.|+|||.+++...
T Consensus 98 ~~----------~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 98 GG----------LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred ch----------hHHHHHHHHHHHcCCCCEEEEEec
Confidence 32 335778999999999999998753
No 57
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.63 E-value=8.6e-15 Score=122.44 Aligned_cols=125 Identities=25% Similarity=0.346 Sum_probs=96.8
Q ss_pred CCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccce
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA 177 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~ 177 (278)
.+.+|||+|||+|.++..++.. +..+++|+|+++.+++.+++++...+++++.++++|+.+....++||+|++++++..
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 3468999999999999999987 334899999999999999999998888779999999987545688999999988753
Q ss_pred ec----cC---------------CCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhh
Q 023703 178 IG----LH---------------PDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN 223 (278)
Q Consensus 178 ~~----~~---------------~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 223 (278)
.. +. ..+......+++.+.++|+|||.+++........++...+.+
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~ 231 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEA 231 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHh
Confidence 21 00 011122357789999999999999998765555555555443
No 58
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.63 E-value=7e-15 Score=122.09 Aligned_cols=108 Identities=18% Similarity=0.254 Sum_probs=88.6
Q ss_pred CCCCeEEEEecCCCHHHHHHhhC---CCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCccCCCccEEEeCC
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKG 173 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~fD~v~~~~ 173 (278)
.++.+|||+|||+|..+..+++. +..+++|+|+|+.+++.|++++...+. .+++++++|+.+.+.+ .+|+|++..
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~d~v~~~~ 130 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK-NASMVILNF 130 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC-CCCEEeeec
Confidence 36679999999999999998874 234899999999999999999876543 3589999999887554 589999887
Q ss_pred ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703 174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 211 (278)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 211 (278)
+++++. ..+...+++++.++|+|||.+++.+..
T Consensus 131 ~l~~~~-----~~~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 131 TLQFLP-----PEDRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred chhhCC-----HHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence 776553 345678889999999999999998743
No 59
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.63 E-value=8.9e-15 Score=116.93 Aligned_cols=117 Identities=19% Similarity=0.214 Sum_probs=90.0
Q ss_pred ccCCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCc
Q 023703 96 KYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGT 174 (278)
Q Consensus 96 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~ 174 (278)
...++.+|||+|||+|.++..++... ..+|+++|+|+.+++.+++++..+++.+++++.+|... ...++||+|++...
T Consensus 28 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~D~v~~~~~ 106 (187)
T PRK08287 28 ELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-ELPGKADAIFIGGS 106 (187)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-hcCcCCCEEEECCC
Confidence 34577899999999999999998863 34899999999999999999988877779999998753 33568999998654
Q ss_pred cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec-CCChHHHHHHHhh
Q 023703 175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC-NSTKDELVHEVSN 223 (278)
Q Consensus 175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~~~ 223 (278)
.. ....+++.+.+.|+|||.+++... .....+....+.+
T Consensus 107 ~~----------~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~ 146 (187)
T PRK08287 107 GG----------NLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEK 146 (187)
T ss_pred cc----------CHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHH
Confidence 32 234567889999999999988753 3333444444443
No 60
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.62 E-value=5.3e-15 Score=119.50 Aligned_cols=124 Identities=16% Similarity=0.193 Sum_probs=91.6
Q ss_pred CCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccc-cCCc--c-CCCccEEEeCC
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV-LDTK--L-ERQFQLVMDKG 173 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~-~~~~--~-~~~fD~v~~~~ 173 (278)
++.+|||+|||+|..+..++.. +..+|+|+|+|+.+++.|++++...+++++.++++|+ ...+ . +++||+|+++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 5679999999999999999876 3358999999999999999999888877899999999 5443 2 57899999864
Q ss_pred ccceec-cCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChH-HHHHHHh
Q 023703 174 TLDAIG-LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD-ELVHEVS 222 (278)
Q Consensus 174 ~~~~~~-~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~~~~ 222 (278)
+..... .+.........+++++.++|||||.+++.+.+.... ++.+.+.
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~ 170 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLS 170 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHH
Confidence 321111 011111124667899999999999999987655432 3444443
No 61
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.62 E-value=6.1e-17 Score=115.82 Aligned_cols=95 Identities=32% Similarity=0.424 Sum_probs=64.1
Q ss_pred EEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccC---CccCCCccEEEeCCccceec
Q 023703 104 LDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD---TKLERQFQLVMDKGTLDAIG 179 (278)
Q Consensus 104 LDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~---~~~~~~fD~v~~~~~~~~~~ 179 (278)
||+|||+|.++..+++. +..+++++|+|+.+++.+++++......+......+..+ ....++||+|++..+++++.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 79999999999999887 345999999999999999998887764444444433333 33346999999999999884
Q ss_pred cCCCChhhHHHHHHHHHhcccCCcEE
Q 023703 180 LHPDGPLKRIMYWDSVSKLVAPGGLL 205 (278)
Q Consensus 180 ~~~~~~~~~~~~l~~~~~~LkpgG~l 205 (278)
+...+++++.++|||||.|
T Consensus 81 -------~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 -------DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --------HHHHHHHHTTT-TSS-EE
T ss_pred -------hHHHHHHHHHHHcCCCCCC
Confidence 7778889999999999986
No 62
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.62 E-value=6e-15 Score=134.44 Aligned_cols=107 Identities=22% Similarity=0.304 Sum_probs=90.4
Q ss_pred cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCcc
Q 023703 97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTL 175 (278)
Q Consensus 97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~ 175 (278)
..++.+|||||||+|..+..++.....+|+|+|+|+.+++.|+++....+ .++.+.++|+...+. +++||+|++..++
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~I~s~~~l 342 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKTYPDNSFDVIYSRDTI 342 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCCCCCCCEEEEEECCcc
Confidence 35678999999999999999988632489999999999999998875443 368999999988764 5789999999998
Q ss_pred ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703 176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 211 (278)
Q Consensus 176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 211 (278)
.|+. +...+++++.++|||||.+++.+..
T Consensus 343 ~h~~-------d~~~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 343 LHIQ-------DKPALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred cccC-------CHHHHHHHHHHHcCCCeEEEEEEec
Confidence 8875 6678889999999999999998643
No 63
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.61 E-value=1.6e-14 Score=122.48 Aligned_cols=148 Identities=23% Similarity=0.292 Sum_probs=103.3
Q ss_pred ccccCcccccccccccchhhhc---cccCCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCc
Q 023703 73 SISQGHMLNHVEDLKSEPVEEN---DKYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS 148 (278)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~ 148 (278)
....+.+.|+++ ...++..+ ....++.+|||+|||+|.++..++... ..+++++|+|+.+++.|++++......
T Consensus 81 ~~~~~~lipr~~--te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~ 158 (275)
T PRK09328 81 KVSPGVLIPRPE--TEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGA 158 (275)
T ss_pred EECCCceeCCCC--cHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCC
Confidence 455556655432 12222322 233467799999999999999999873 358999999999999999998733334
Q ss_pred ceEEEEccccCCccCCCccEEEeCCccceec----c---------------CCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 149 CIKFLVDDVLDTKLERQFQLVMDKGTLDAIG----L---------------HPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 149 ~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~----~---------------~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
++.++.+|+.+....++||+|++++++.... + +..+......+++++.++|+|||.+++..
T Consensus 159 ~i~~~~~d~~~~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 159 RVEFLQGDWFEPLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred cEEEEEccccCcCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 6999999997654457899999998873211 0 11223445678889999999999999977
Q ss_pred cCCChHHHHHHHh
Q 023703 210 CNSTKDELVHEVS 222 (278)
Q Consensus 210 ~~~~~~~~~~~~~ 222 (278)
.......+...+.
T Consensus 239 g~~~~~~~~~~l~ 251 (275)
T PRK09328 239 GYDQGEAVRALLA 251 (275)
T ss_pred CchHHHHHHHHHH
Confidence 6554444444433
No 64
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.60 E-value=1.7e-14 Score=117.42 Aligned_cols=101 Identities=17% Similarity=0.263 Sum_probs=84.3
Q ss_pred ccCCCCeEEEEecCCCHHHHHHhhC-CC-CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-cCCCccEEEeC
Q 023703 96 KYLSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-LERQFQLVMDK 172 (278)
Q Consensus 96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~ 172 (278)
...++.+|||||||+|.++..+++. +. .+|+++|+++.+++.++++++..++.+++++++|..... ..++||+|++.
T Consensus 73 ~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~ 152 (212)
T PRK13942 73 DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVT 152 (212)
T ss_pred CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEEC
Confidence 4568899999999999999988876 32 489999999999999999999888878999999987654 35789999987
Q ss_pred CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
.....+. +.+.+.|||||++++..
T Consensus 153 ~~~~~~~-------------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 153 AAGPDIP-------------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCcccch-------------HHHHHhhCCCcEEEEEE
Confidence 6654332 56777899999998865
No 65
>PRK05785 hypothetical protein; Provisional
Probab=99.60 E-value=3.6e-15 Score=122.43 Aligned_cols=139 Identities=15% Similarity=0.172 Sum_probs=96.0
Q ss_pred CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCccce
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLDA 177 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~~~ 177 (278)
++.+|||+|||||.++..+++....+|+|+|+|+.|++.|+++ ..++++|+.+.++ +++||+|++..++++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~--------~~~~~~d~~~lp~~d~sfD~v~~~~~l~~ 122 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA--------DDKVVGSFEALPFRDKSFDVVMSSFALHA 122 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc--------cceEEechhhCCCCCCCEEEEEecChhhc
Confidence 4679999999999999999987223899999999999999863 1356888888765 688999999988876
Q ss_pred eccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhhhhhcccccccchhhhcccccCCCCceeee-eecC
Q 023703 178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEHEIKDEEACREPPFRYLN-HVRT 256 (278)
Q Consensus 178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 256 (278)
+. +....++++.++|||. ..++ +.+.+.......+..++...+.+..+..+ ..+...|.++. .+..
T Consensus 123 ~~-------d~~~~l~e~~RvLkp~-~~il-e~~~p~~~~~~~~~~~y~~~~~P~~~~~~----~~~~~~Y~yl~~si~~ 189 (226)
T PRK05785 123 SD-------NIEKVIAEFTRVSRKQ-VGFI-AMGKPDNVIKRKYLSFYLRYIMPYIACLA----GAKCRDYKYIYYIYER 189 (226)
T ss_pred cC-------CHHHHHHHHHHHhcCc-eEEE-EeCCCCcHHHHHHHHHHHHHHHHHHHHHh----cCChHHHHHHHHHHHH
Confidence 64 6677889999999994 2233 33333334455555565555544333322 33345576665 2444
Q ss_pred Cc
Q 023703 257 YP 258 (278)
Q Consensus 257 ~~ 258 (278)
+|
T Consensus 190 f~ 191 (226)
T PRK05785 190 LP 191 (226)
T ss_pred CC
Confidence 43
No 66
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.59 E-value=2e-14 Score=116.40 Aligned_cols=101 Identities=17% Similarity=0.231 Sum_probs=83.9
Q ss_pred cCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCc-cCCCccEEEeC
Q 023703 97 YLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK-LERQFQLVMDK 172 (278)
Q Consensus 97 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~-~~~~fD~v~~~ 172 (278)
..++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.|++++...++. +++++.+|..+.. ..++||+|++.
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 149 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVT 149 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEc
Confidence 457789999999999999888875 2 248999999999999999999888765 4899999998743 34689999998
Q ss_pred CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
.++.++. +++.+.|+|||++++...
T Consensus 150 ~~~~~~~-------------~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 150 AAASTIP-------------SALVRQLKDGGVLVIPVE 174 (205)
T ss_pred cCcchhh-------------HHHHHhcCcCcEEEEEEc
Confidence 8766553 578899999999988653
No 67
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.59 E-value=2.6e-14 Score=123.86 Aligned_cols=108 Identities=19% Similarity=0.254 Sum_probs=88.2
Q ss_pred CCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCcccee
Q 023703 100 SWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAI 178 (278)
Q Consensus 100 ~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~ 178 (278)
..+|||+|||+|.++..+++.. ..+|+++|+|+.+++.++++++.+++ ..++...|+... .+++||+|+++++|+..
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l-~~~~~~~D~~~~-~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL-EGEVFASNVFSD-IKGRFDMIISNPPFHDG 274 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-CCEEEEcccccc-cCCCccEEEECCCccCC
Confidence 4589999999999999999873 34899999999999999999998876 467788887653 46789999999998642
Q ss_pred ccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703 179 GLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 211 (278)
Q Consensus 179 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 211 (278)
. .........+++++.+.|||||.++++...
T Consensus 275 ~--~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 275 I--QTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred c--cccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 1 112335678889999999999999888644
No 68
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=2.1e-14 Score=119.27 Aligned_cols=109 Identities=22% Similarity=0.256 Sum_probs=89.0
Q ss_pred CCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccce
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA 177 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~ 177 (278)
.+.+|||+|||.|.+++.+++.. ..+++-+|+|..+++.+++|+..+++++..+...|..+...+ +||+|++|++|+.
T Consensus 158 ~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~-kfd~IisNPPfh~ 236 (300)
T COG2813 158 LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEG-KFDLIISNPPFHA 236 (300)
T ss_pred CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccc-cccEEEeCCCccC
Confidence 34499999999999999999984 469999999999999999999999887667778888765444 9999999999963
Q ss_pred eccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
=. .....-...+++.+.+.|++||.|.++..
T Consensus 237 G~--~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 237 GK--AVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred Cc--chhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 21 11112334788999999999999998865
No 69
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.59 E-value=1.6e-14 Score=117.99 Aligned_cols=102 Identities=17% Similarity=0.197 Sum_probs=85.0
Q ss_pred ccCCCCeEEEEecCCCHHHHHHhhCCC--CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeC
Q 023703 96 KYLSSWSVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDK 172 (278)
Q Consensus 96 ~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~ 172 (278)
...++.+|||+|||+|.++..++.... .+|+++|+++.+++.|+++++..++++++++.+|..+... ..+||+|++.
T Consensus 74 ~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 153 (215)
T TIGR00080 74 ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVT 153 (215)
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEc
Confidence 456788999999999999999988732 2599999999999999999999988889999999976533 4689999987
Q ss_pred CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
.....+. +.+.+.|+|||++++...
T Consensus 154 ~~~~~~~-------------~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 154 AAGPKIP-------------EALIDQLKEGGILVMPVG 178 (215)
T ss_pred CCccccc-------------HHHHHhcCcCcEEEEEEc
Confidence 6654443 567889999999998654
No 70
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.59 E-value=8.9e-15 Score=113.80 Aligned_cols=99 Identities=33% Similarity=0.521 Sum_probs=81.8
Q ss_pred cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC-ccCCCccEEEeCCcc
Q 023703 97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-KLERQFQLVMDKGTL 175 (278)
Q Consensus 97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~-~~~~~fD~v~~~~~~ 175 (278)
..++.+|||+|||+|.++..++..|. +++|+|+++.+++. .++.....+.... .++++||+|++..++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~l 88 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK----------RNVVFDNFDAQDPPFPDGSFDLIICNDVL 88 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH----------TTSEEEEEECHTHHCHSSSEEEEEEESSG
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh----------hhhhhhhhhhhhhhccccchhhHhhHHHH
Confidence 46778999999999999999999887 99999999999988 1223333322232 246899999999999
Q ss_pred ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703 176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 213 (278)
Q Consensus 176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 213 (278)
+++. +...+++++.++|||||.+++.++...
T Consensus 89 ~~~~-------d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 89 EHLP-------DPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp GGSS-------HHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred hhcc-------cHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 9987 788899999999999999999998764
No 71
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.59 E-value=3e-14 Score=127.44 Aligned_cols=142 Identities=20% Similarity=0.276 Sum_probs=110.0
Q ss_pred ccchhhhccccCCCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc--c
Q 023703 87 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--L 162 (278)
Q Consensus 87 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~--~ 162 (278)
..+++..+....++.+|||+|||+|..+..++.. +..+|+++|+++.+++.++++++..|+.++.+.++|..... .
T Consensus 225 ~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~ 304 (431)
T PRK14903 225 SSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYV 304 (431)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhh
Confidence 3344444456678899999999999999998876 23489999999999999999999999878999999998764 3
Q ss_pred CCCccEEEeCCccceeccCCCCh---------------hhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhhhhhc
Q 023703 163 ERQFQLVMDKGTLDAIGLHPDGP---------------LKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQR 227 (278)
Q Consensus 163 ~~~fD~v~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~ 227 (278)
.++||.|+++.+......-...+ .....++.++.+.|||||.+++++|+...++....+..|-.+
T Consensus 305 ~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~ 384 (431)
T PRK14903 305 QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYE 384 (431)
T ss_pred hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHh
Confidence 57899999987764443211111 123567899999999999999999998888877777665544
Q ss_pred c
Q 023703 228 R 228 (278)
Q Consensus 228 ~ 228 (278)
+
T Consensus 385 ~ 385 (431)
T PRK14903 385 Q 385 (431)
T ss_pred C
Confidence 3
No 72
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=3.8e-14 Score=112.10 Aligned_cols=110 Identities=17% Similarity=0.216 Sum_probs=95.6
Q ss_pred chhhhccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-cCCCcc
Q 023703 89 EPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-LERQFQ 167 (278)
Q Consensus 89 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~fD 167 (278)
..+..+..+.++.+|||||||+|..+..|++.. .+|+.+|..++..+.|++|++..|+.|+.++++|...-. ...+||
T Consensus 62 A~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~-~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD 140 (209)
T COG2518 62 ARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV-GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYD 140 (209)
T ss_pred HHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh-CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcC
Confidence 344445566788999999999999999999984 389999999999999999999999989999999998754 458999
Q ss_pred EEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703 168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 212 (278)
Q Consensus 168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 212 (278)
.|+.......++ +.+.+.|||||++++-....
T Consensus 141 ~I~Vtaaa~~vP-------------~~Ll~QL~~gGrlv~PvG~~ 172 (209)
T COG2518 141 RIIVTAAAPEVP-------------EALLDQLKPGGRLVIPVGSG 172 (209)
T ss_pred EEEEeeccCCCC-------------HHHHHhcccCCEEEEEEccC
Confidence 999998887776 78899999999999987733
No 73
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.59 E-value=4.6e-14 Score=113.33 Aligned_cols=124 Identities=17% Similarity=0.241 Sum_probs=91.2
Q ss_pred CCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc----cCCCccEEEeCC
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLVMDKG 173 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~----~~~~fD~v~~~~ 173 (278)
...+|||||||+|.++..++.. +..+++|+|+++.+++.|+++....++++++++++|+.+.. .++.+|.|+.+.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 3458999999999999999987 34589999999999999999998888888999999997643 235799998764
Q ss_pred ccceecc-CCCChhhHHHHHHHHHhcccCCcEEEEEecCCC-hHHHHHHHh
Q 023703 174 TLDAIGL-HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST-KDELVHEVS 222 (278)
Q Consensus 174 ~~~~~~~-~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~ 222 (278)
+-.+..- |.........+++++.++|||||.+++.+.+.. .+++...+.
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~ 146 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLS 146 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 3221110 101111124678999999999999999876554 333444443
No 74
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.58 E-value=2.6e-14 Score=115.66 Aligned_cols=158 Identities=20% Similarity=0.261 Sum_probs=117.6
Q ss_pred cCcchhhHHhhhhc-ccccccccCccccccc--ccccchhhhcccc--CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEE
Q 023703 55 FGADVMDVVASWTK-SLCISISQGHMLNHVE--DLKSEPVEENDKY--LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGV 128 (278)
Q Consensus 55 ~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~ 128 (278)
-..|.+++++.|.. ++.+...+|.++|+++ ..+..+++.+.+. .++..|||+|||+|.+++.++.. +...|+++
T Consensus 99 ~r~PlQYIlg~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~Ai 178 (328)
T KOG2904|consen 99 KRMPLQYILGSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAI 178 (328)
T ss_pred hcCChhheeccCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEE
Confidence 34577888888884 4557889999999884 3444445544332 34558999999999999998886 44589999
Q ss_pred eCChHHHHHHHHHhhhCCCcc-eEEEEccccCC----c--cCCCccEEEeCCccce---e----------------ccCC
Q 023703 129 DYSEDAINLAQSLANRDGFSC-IKFLVDDVLDT----K--LERQFQLVMDKGTLDA---I----------------GLHP 182 (278)
Q Consensus 129 D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~----~--~~~~fD~v~~~~~~~~---~----------------~~~~ 182 (278)
|.|+.++..|.+|++.+++.+ +.+++-++... . +.+++|++++|++|-. + ....
T Consensus 179 D~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~ 258 (328)
T KOG2904|consen 179 DVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGL 258 (328)
T ss_pred eccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhcccc
Confidence 999999999999999988765 77775554432 1 3589999999998721 0 0122
Q ss_pred CChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703 183 DGPLKRIMYWDSVSKLVAPGGLLVITSCNS 212 (278)
Q Consensus 183 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 212 (278)
++......++.-+.|.|+|||.+.+.....
T Consensus 259 eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~ 288 (328)
T KOG2904|consen 259 EGYDNLVHYWLLATRMLQPGGFEQLELVER 288 (328)
T ss_pred chhHHHHHHHHhhHhhcccCCeEEEEeccc
Confidence 445566778888999999999999987633
No 75
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.58 E-value=2.4e-14 Score=115.53 Aligned_cols=103 Identities=22% Similarity=0.356 Sum_probs=82.6
Q ss_pred ccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCc
Q 023703 96 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGT 174 (278)
Q Consensus 96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~ 174 (278)
...++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++. +++.+.++|+.+...+++||+|+++.+
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~~~~~~sfD~V~~~~v 114 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFDPFKDNFFDLVLTKGV 114 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccCCCCCCCEEEEEECCh
Confidence 3346679999999999999999886 4458999999999999998864 356788899887434689999999999
Q ss_pred cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
+.|+. +.....+++++.+++ ++.+++...
T Consensus 115 L~hl~-----p~~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 115 LIHIN-----PDNLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred hhhCC-----HHHHHHHHHHHHhhc--CcEEEEEEe
Confidence 87763 446778889999987 456666653
No 76
>PRK14968 putative methyltransferase; Provisional
Probab=99.57 E-value=8.8e-14 Score=111.13 Aligned_cols=124 Identities=21% Similarity=0.343 Sum_probs=94.8
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc--eEEEEccccCCccCCCccEEEeCCcc
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC--IKFLVDDVLDTKLERQFQLVMDKGTL 175 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~--~~~~~~d~~~~~~~~~fD~v~~~~~~ 175 (278)
.++.+|||+|||+|.++..++..+ .+++++|+|+.+++.+++++..+++.+ +.++++|+.+...+.+||+|+++.++
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPY 100 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCc
Confidence 467799999999999999999985 589999999999999999998877654 88999998775555689999998876
Q ss_pred ceec--------------cCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC-hHHHHHHHh
Q 023703 176 DAIG--------------LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST-KDELVHEVS 222 (278)
Q Consensus 176 ~~~~--------------~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~ 222 (278)
.... ....+......+++++.++|||||.+++..+... .+.+...+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~ 162 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLE 162 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHH
Confidence 3210 0111233456788999999999999988766543 333444333
No 77
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.57 E-value=4.8e-14 Score=122.36 Aligned_cols=118 Identities=14% Similarity=0.060 Sum_probs=96.2
Q ss_pred cccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCC
Q 023703 95 DKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKG 173 (278)
Q Consensus 95 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~ 173 (278)
....++.+|||+|||+|.++..++..+. +++|+|+++.+++.++.|++..++.++.+.++|+.+.+. +++||+|++++
T Consensus 178 ~~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dP 256 (329)
T TIGR01177 178 ARVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDP 256 (329)
T ss_pred hCCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECC
Confidence 4556788999999999999998888764 899999999999999999999888778999999998765 57899999999
Q ss_pred ccceeccC-CC-ChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703 174 TLDAIGLH-PD-GPLKRIMYWDSVSKLVAPGGLLVITSCNST 213 (278)
Q Consensus 174 ~~~~~~~~-~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 213 (278)
++..-... .. .......+++++.++|+|||++++..++..
T Consensus 257 Pyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~ 298 (329)
T TIGR01177 257 PYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI 298 (329)
T ss_pred CCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC
Confidence 88532211 11 112356788999999999999998877653
No 78
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.57 E-value=6e-14 Score=126.44 Aligned_cols=135 Identities=20% Similarity=0.240 Sum_probs=103.3
Q ss_pred hccccCCCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEE
Q 023703 93 ENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVM 170 (278)
Q Consensus 93 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~ 170 (278)
.+....++.+|||+|||+|..+..+++. +..+|+++|+|+.+++.++++++..|+.+++++++|+.+...+++||.|+
T Consensus 244 ~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl 323 (445)
T PRK14904 244 LLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAIL 323 (445)
T ss_pred HhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEE
Confidence 3344567889999999999999888874 22489999999999999999999999878999999998876667899999
Q ss_pred eCCccceecc---CCC-----Chh-------hHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhhhhhc
Q 023703 171 DKGTLDAIGL---HPD-----GPL-------KRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQR 227 (278)
Q Consensus 171 ~~~~~~~~~~---~~~-----~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~ 227 (278)
.+.+...... +++ ... ....++..+.++|||||++++++|+...++....+..+-..
T Consensus 324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~ 395 (445)
T PRK14904 324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQR 395 (445)
T ss_pred EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence 8755432211 110 111 23468899999999999999999998877665555554443
No 79
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.57 E-value=2.9e-14 Score=125.55 Aligned_cols=106 Identities=27% Similarity=0.488 Sum_probs=88.1
Q ss_pred ccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCc
Q 023703 96 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGT 174 (278)
Q Consensus 96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~ 174 (278)
...++.+|||||||+|.++..+++. +. +|+|+|+|+.+++.|+++.. ++ ++++...|..+. +++||.|++.+.
T Consensus 164 ~l~~g~rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~~~l--~~~fD~Ivs~~~ 237 (383)
T PRK11705 164 QLKPGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCA--GL-PVEIRLQDYRDL--NGQFDRIVSVGM 237 (383)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc--cC-eEEEEECchhhc--CCCCCEEEEeCc
Confidence 3467889999999999999999986 54 89999999999999999874 32 478888888764 578999999988
Q ss_pred cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703 175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 212 (278)
Q Consensus 175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 212 (278)
++++. ......+++++.++|||||.+++.+...
T Consensus 238 ~ehvg-----~~~~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 238 FEHVG-----PKNYRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred hhhCC-----hHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 87763 3355678899999999999999986543
No 80
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.56 E-value=6.2e-14 Score=117.86 Aligned_cols=141 Identities=18% Similarity=0.147 Sum_probs=104.9
Q ss_pred ccccchhhhccccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc
Q 023703 85 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL 162 (278)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~ 162 (278)
+...++...+....++.+|||+|||+|..+..++.. + ...|+++|+++.+++.++++++..++.++.+++.|......
T Consensus 57 d~~s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~ 136 (264)
T TIGR00446 57 EASSMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGA 136 (264)
T ss_pred CHHHHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhh
Confidence 333334444455678899999999999999998875 2 23799999999999999999999998789999999876542
Q ss_pred -CCCccEEEeCCccceecc---CCC-----Ch-------hhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhhhh
Q 023703 163 -ERQFQLVMDKGTLDAIGL---HPD-----GP-------LKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLS 225 (278)
Q Consensus 163 -~~~fD~v~~~~~~~~~~~---~~~-----~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 225 (278)
.+.||.|+++.+...... ++. .. .....+|+.+.++|||||++++++|+...++....+..+-
T Consensus 137 ~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l 215 (264)
T TIGR00446 137 AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLL 215 (264)
T ss_pred hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHH
Confidence 456999998876543311 111 01 1234688999999999999999999887766555544443
No 81
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.56 E-value=2.9e-14 Score=122.63 Aligned_cols=104 Identities=15% Similarity=0.156 Sum_probs=86.3
Q ss_pred CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCcc
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTL 175 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~ 175 (278)
.++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|+++... .+++++.+|+.+.+. +++||+|+++.++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~---~~i~~i~gD~e~lp~~~~sFDvVIs~~~L 188 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc---cCCeEEeccHHhCCCCCCceeEEEEcChh
Confidence 45679999999999999988875 335899999999999999987642 368899999988764 5789999999888
Q ss_pred ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703 176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 211 (278)
Q Consensus 176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 211 (278)
+++. +....++++.++|+|||.+++....
T Consensus 189 ~~~~-------d~~~~L~e~~rvLkPGG~LvIi~~~ 217 (340)
T PLN02490 189 EYWP-------DPQRGIKEAYRVLKIGGKACLIGPV 217 (340)
T ss_pred hhCC-------CHHHHHHHHHHhcCCCcEEEEEEec
Confidence 7664 4556789999999999999887543
No 82
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.55 E-value=5.7e-14 Score=123.87 Aligned_cols=125 Identities=19% Similarity=0.210 Sum_probs=94.6
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc--ceEEEEccccCCc-----cCCCccEEE
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTK-----LERQFQLVM 170 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~--~~~~~~~d~~~~~-----~~~~fD~v~ 170 (278)
.++++|||+|||+|.+++.++..|..+|+++|+|+.+++.|++|+..+++. +++++++|+.+.. ..++||+|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 467899999999999999877777679999999999999999999999874 6899999998752 135899999
Q ss_pred eCCccceeccC--CCChhhHHHHHHHHHhcccCCcEEEEEecCC--ChHHHHHHHh
Q 023703 171 DKGTLDAIGLH--PDGPLKRIMYWDSVSKLVAPGGLLVITSCNS--TKDELVHEVS 222 (278)
Q Consensus 171 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~ 222 (278)
+++++-.-.-. .........++..+.++|+|||.++.++|+. +.+.+.+.+.
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~ 354 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIA 354 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHH
Confidence 99886221100 0001134455677899999999999987764 4444555443
No 83
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.55 E-value=3.5e-14 Score=117.86 Aligned_cols=106 Identities=24% Similarity=0.215 Sum_probs=83.2
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCccCCCccEEEeCCccc
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKGTLD 176 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~fD~v~~~~~~~ 176 (278)
..|++|||||||+|..+..++..|++.|+|+|.++-..-..+-.-...|.+. +.+...-+.+++..+.||+|++.+++.
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FDtVF~MGVLY 193 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFDTVFSMGVLY 193 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcCEEEEeeehh
Confidence 4788999999999999999999998899999999887666443333333222 333334555555568899999999998
Q ss_pred eeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
|.. +....|.+++..|+|||.+++.+.
T Consensus 194 Hrr-------~Pl~~L~~Lk~~L~~gGeLvLETl 220 (315)
T PF08003_consen 194 HRR-------SPLDHLKQLKDSLRPGGELVLETL 220 (315)
T ss_pred ccC-------CHHHHHHHHHHhhCCCCEEEEEEe
Confidence 876 777788999999999999999864
No 84
>PRK06922 hypothetical protein; Provisional
Probab=99.55 E-value=5e-14 Score=128.50 Aligned_cols=112 Identities=16% Similarity=0.286 Sum_probs=90.1
Q ss_pred CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc---cCCCccEEEeCC
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LERQFQLVMDKG 173 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~---~~~~fD~v~~~~ 173 (278)
.++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++....+ .++.++++|+.+.+ .+++||+|+++.
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g-~~ie~I~gDa~dLp~~fedeSFDvVVsn~ 495 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG-RSWNVIKGDAINLSSSFEKESVDTIVYSS 495 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC-CCeEEEEcchHhCccccCCCCEEEEEEch
Confidence 46789999999999999888875 33599999999999999999876555 36888999988764 357899999998
Q ss_pred ccceeccC------CCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 174 TLDAIGLH------PDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 174 ~~~~~~~~------~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
+++++... ..+......+++++.++|||||.+++.+.
T Consensus 496 vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 496 ILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 88765211 11235678889999999999999999864
No 85
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.54 E-value=7.5e-14 Score=114.41 Aligned_cols=104 Identities=26% Similarity=0.329 Sum_probs=84.1
Q ss_pred cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCccCCCccEEEeCCcc
Q 023703 97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTL 175 (278)
Q Consensus 97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~fD~v~~~~~~ 175 (278)
..++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|++++...+. .++.+.++|+.+.+ ++||+|++..++
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~fD~ii~~~~l 129 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC--GEFDIVVCMDVL 129 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--CCcCEEEEhhHH
Confidence 34678999999999999999998864 899999999999999999877664 36899999998764 789999998776
Q ss_pred ceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703 176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 208 (278)
Q Consensus 176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 208 (278)
.++. ......+++++.+++++++.+.+.
T Consensus 130 ~~~~-----~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 130 IHYP-----ASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred HhCC-----HHHHHHHHHHHHHHhCCCEEEEEC
Confidence 5542 235567788999988876555543
No 86
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.54 E-value=8.6e-14 Score=115.40 Aligned_cols=105 Identities=23% Similarity=0.366 Sum_probs=88.1
Q ss_pred CCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-cCCCccEEEeCCccc
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-LERQFQLVMDKGTLD 176 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~~~ 176 (278)
++.+|||+|||+|.++..++..+ ..+++++|+++.+++.++++.. +++.++.+|+.+.+ .+++||+|+++.+++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~ 109 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPLEDSSFDLIVSNLALQ 109 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCCCCCceeEEEEhhhhh
Confidence 44689999999999999999884 3478999999999999988764 36889999998876 357899999998887
Q ss_pred eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703 177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK 214 (278)
Q Consensus 177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 214 (278)
++. +...++.++.++|+|||.+++.++....
T Consensus 110 ~~~-------~~~~~l~~~~~~L~~~G~l~~~~~~~~~ 140 (240)
T TIGR02072 110 WCD-------DLSQALSELARVLKPGGLLAFSTFGPGT 140 (240)
T ss_pred hcc-------CHHHHHHHHHHHcCCCcEEEEEeCCccC
Confidence 764 5667889999999999999998765543
No 87
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.54 E-value=9.9e-14 Score=113.10 Aligned_cols=102 Identities=18% Similarity=0.145 Sum_probs=84.8
Q ss_pred cccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCC
Q 023703 95 DKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKG 173 (278)
Q Consensus 95 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~ 173 (278)
....++.+|||+|||+|..+..++... .+|+++|+++.+++.++++++..++.++++..+|..+... .++||+|++..
T Consensus 74 l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~ 152 (212)
T PRK00312 74 LELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTA 152 (212)
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEcc
Confidence 345677899999999999999888774 4899999999999999999998888789999999866433 47899999877
Q ss_pred ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
.+..+. +.+.+.|+|||.+++...
T Consensus 153 ~~~~~~-------------~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 153 AAPEIP-------------RALLEQLKEGGILVAPVG 176 (212)
T ss_pred Cchhhh-------------HHHHHhcCCCcEEEEEEc
Confidence 654332 567889999999998765
No 88
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.54 E-value=1.3e-13 Score=123.83 Aligned_cols=135 Identities=23% Similarity=0.313 Sum_probs=104.8
Q ss_pred ccccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-----cCCCc
Q 023703 94 NDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----LERQF 166 (278)
Q Consensus 94 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----~~~~f 166 (278)
.....++.+|||+|||+|..+..++.. + ..+|+++|+++.+++.++++++..|+.++.++++|..... ..++|
T Consensus 247 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~f 326 (434)
T PRK14901 247 LLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYF 326 (434)
T ss_pred HhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccC
Confidence 345567889999999999999999886 2 2489999999999999999999999888999999998764 24689
Q ss_pred cEEEeCCccceecc---CCC-----Chh-------hHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhhhhhcc
Q 023703 167 QLVMDKGTLDAIGL---HPD-----GPL-------KRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRR 228 (278)
Q Consensus 167 D~v~~~~~~~~~~~---~~~-----~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~ 228 (278)
|.|+++.+...... +++ .+. ....++.++.++|||||++++++|+-..++....+..+..++
T Consensus 327 D~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~ 403 (434)
T PRK14901 327 DRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARH 403 (434)
T ss_pred CEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhC
Confidence 99998766432211 111 011 135788999999999999999999888777777666655443
No 89
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.53 E-value=1.6e-13 Score=123.77 Aligned_cols=132 Identities=19% Similarity=0.291 Sum_probs=100.4
Q ss_pred ccccCCCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc--cCCCccEE
Q 023703 94 NDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLV 169 (278)
Q Consensus 94 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~fD~v 169 (278)
.....++.+|||+|||+|..+..++.. +..+|+++|+++.+++.++++++..|+.++.++++|+.+.. ..++||+|
T Consensus 245 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~V 324 (444)
T PRK14902 245 ALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKI 324 (444)
T ss_pred HhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEE
Confidence 344567889999999999999999885 23589999999999999999999999878999999998753 24789999
Q ss_pred EeCCccceecc---CCC-----Chh-------hHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhhhh
Q 023703 170 MDKGTLDAIGL---HPD-----GPL-------KRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLS 225 (278)
Q Consensus 170 ~~~~~~~~~~~---~~~-----~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 225 (278)
+++++...... ++. ... ....++..+.++|||||.++++++....++....+..+.
T Consensus 325 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l 395 (444)
T PRK14902 325 LVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFL 395 (444)
T ss_pred EEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHH
Confidence 99876432211 110 011 124678999999999999999988876665554444433
No 90
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.53 E-value=6.8e-14 Score=108.81 Aligned_cols=107 Identities=19% Similarity=0.274 Sum_probs=87.9
Q ss_pred CeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceE-EEEccccCCc--cCCCccEEEeCCccce
Q 023703 101 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIK-FLVDDVLDTK--LERQFQLVMDKGTLDA 177 (278)
Q Consensus 101 ~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~-~~~~d~~~~~--~~~~fD~v~~~~~~~~ 177 (278)
..||++|||||..-...-..+..+|+++|.++.|-+.+.+.++.+.-.++. |++++..+++ .+++||.|++.-++..
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCS 157 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCS 157 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEec
Confidence 468999999998877766554458999999999999999998887555665 9999999987 5899999999766654
Q ss_pred eccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703 178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK 214 (278)
Q Consensus 178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 214 (278)
+. +..+.|++++++|+|||++++..-....
T Consensus 158 ve-------~~~k~L~e~~rlLRpgG~iifiEHva~~ 187 (252)
T KOG4300|consen 158 VE-------DPVKQLNEVRRLLRPGGRIIFIEHVAGE 187 (252)
T ss_pred cC-------CHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 43 7777889999999999999987654443
No 91
>PRK08317 hypothetical protein; Provisional
Probab=99.53 E-value=1.8e-13 Score=113.44 Aligned_cols=107 Identities=23% Similarity=0.362 Sum_probs=88.7
Q ss_pred cCCCCeEEEEecCCCHHHHHHhhCC--CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCC
Q 023703 97 YLSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKG 173 (278)
Q Consensus 97 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~ 173 (278)
..++.+|||+|||+|.++..++... ..+++++|+|+.+++.++++..... .++.+...|+...+. +++||+|++..
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~~~~~D~v~~~~ 95 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLG-PNVEFVRGDADGLPFPDGSFDAVRSDR 95 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCC-CceEEEecccccCCCCCCCceEEEEec
Confidence 3567899999999999999998862 3589999999999999998833322 468999999887553 57899999998
Q ss_pred ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703 174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 211 (278)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 211 (278)
+++++. +...+++++.++|+|||.+++..+.
T Consensus 96 ~~~~~~-------~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 96 VLQHLE-------DPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred hhhccC-------CHHHHHHHHHHHhcCCcEEEEEecC
Confidence 888775 6677889999999999999987653
No 92
>PLN03075 nicotianamine synthase; Provisional
Probab=99.52 E-value=3.7e-13 Score=112.92 Aligned_cols=106 Identities=22% Similarity=0.314 Sum_probs=82.8
Q ss_pred CCCeEEEEecCCCHHHHH-Hh-hC-CCCcEEEEeCChHHHHHHHHHhhh-CCCcc-eEEEEccccCCcc-CCCccEEEeC
Q 023703 99 SSWSVLDIGTGNGLLLQE-LS-KQ-GFSDLTGVDYSEDAINLAQSLANR-DGFSC-IKFLVDDVLDTKL-ERQFQLVMDK 172 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~-l~-~~-~~~~v~~~D~s~~~i~~a~~~~~~-~~~~~-~~~~~~d~~~~~~-~~~fD~v~~~ 172 (278)
++++|+|||||.|.++.. ++ .. +..+++++|+++.+++.|++.+.. .++.+ ++|..+|+.+... .++||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 678999999998855443 33 23 334899999999999999999964 66654 9999999988643 4789999997
Q ss_pred CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
++..+ ...+...+++++.+.|+|||.+++...
T Consensus 203 -ALi~~-----dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 203 -ALVGM-----DKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred -ccccc-----ccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 43322 123667888999999999999999874
No 93
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.52 E-value=2.2e-13 Score=122.19 Aligned_cols=133 Identities=19% Similarity=0.261 Sum_probs=101.4
Q ss_pred ccccCCCCeEEEEecCCCHHHHHHhhCCC-CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc---cCCCccEE
Q 023703 94 NDKYLSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LERQFQLV 169 (278)
Q Consensus 94 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~---~~~~fD~v 169 (278)
.....++.+|||+|||+|..+..++.... .+|+++|+++.+++.++++++..|+ ++.++++|+.+.. ..++||.|
T Consensus 239 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-~~~~~~~D~~~~~~~~~~~~fD~V 317 (427)
T PRK10901 239 LLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-KATVIVGDARDPAQWWDGQPFDRI 317 (427)
T ss_pred HcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEcCcccchhhcccCCCCEE
Confidence 34556889999999999999999998732 4899999999999999999999886 4789999998653 24679999
Q ss_pred EeCCccceecc---CC-----CCh-------hhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhhhhhc
Q 023703 170 MDKGTLDAIGL---HP-----DGP-------LKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQR 227 (278)
Q Consensus 170 ~~~~~~~~~~~---~~-----~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~ 227 (278)
+++++...... ++ ... .....++..+.++|||||.+++++|+....+....+..+..+
T Consensus 318 l~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~ 390 (427)
T PRK10901 318 LLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLAR 390 (427)
T ss_pred EECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHh
Confidence 98887543210 11 011 123478899999999999999999877776666655554443
No 94
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.52 E-value=1.5e-13 Score=110.02 Aligned_cols=114 Identities=11% Similarity=-0.052 Sum_probs=86.5
Q ss_pred hhhhccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc--cCCCcc
Q 023703 90 PVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQ 167 (278)
Q Consensus 90 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~fD 167 (278)
++..+....++.+|||+|||+|.+++.++.+++.+|+++|.++.+++.+++|++.+++.++.++++|+.+.. ..++||
T Consensus 44 l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fD 123 (199)
T PRK10909 44 LFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHN 123 (199)
T ss_pred HHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCce
Confidence 444444435678999999999999997666666799999999999999999999998878999999997642 235699
Q ss_pred EEEeCCccceeccCCCChhhHHHHHHHHHh--cccCCcEEEEEecC
Q 023703 168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSK--LVAPGGLLVITSCN 211 (278)
Q Consensus 168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~LkpgG~l~~~~~~ 211 (278)
+|+++++|..- .....++.+.. +|+|+|++++....
T Consensus 124 lV~~DPPy~~g--------~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 124 VVFVDPPFRKG--------LLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred EEEECCCCCCC--------hHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 99999996321 12223344443 47999988888654
No 95
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.52 E-value=2.1e-13 Score=112.86 Aligned_cols=108 Identities=30% Similarity=0.462 Sum_probs=90.4
Q ss_pred cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc--cCCCccEEEeCCc
Q 023703 97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKGT 174 (278)
Q Consensus 97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~fD~v~~~~~ 174 (278)
..++.+|||||||+|.++..+++.+. +++++|+++.+++.+++++...+. ++.+...|..+.. ..++||+|++..+
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~Ii~~~~ 123 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAEHPGQFDVVTCMEM 123 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhhcCCCccEEEEhhH
Confidence 35678999999999999999998864 799999999999999998877664 5788888887654 3578999999888
Q ss_pred cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703 175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 213 (278)
Q Consensus 175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 213 (278)
+.++. +...+++.+.++|+|||.+++..++..
T Consensus 124 l~~~~-------~~~~~l~~~~~~L~~gG~l~v~~~~~~ 155 (233)
T PRK05134 124 LEHVP-------DPASFVRACAKLVKPGGLVFFSTLNRN 155 (233)
T ss_pred hhccC-------CHHHHHHHHHHHcCCCcEEEEEecCCC
Confidence 77664 556678999999999999999876544
No 96
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.51 E-value=2.3e-13 Score=109.69 Aligned_cols=105 Identities=25% Similarity=0.323 Sum_probs=84.8
Q ss_pred ccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCc--cCCCccEEE
Q 023703 96 KYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK--LERQFQLVM 170 (278)
Q Consensus 96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~--~~~~fD~v~ 170 (278)
...++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.++++++.+++ .++.++.+|..+.. ..++||.|+
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~ 116 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIF 116 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEE
Confidence 4567889999999999999998764 2 34899999999999999999998884 57899999987642 246899999
Q ss_pred eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
+.... .....+++.+.++|+|||++++...
T Consensus 117 ~~~~~----------~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 117 IGGGS----------EKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred ECCCc----------ccHHHHHHHHHHHcCCCcEEEEEee
Confidence 85422 1445677999999999999988654
No 97
>PLN02672 methionine S-methyltransferase
Probab=99.51 E-value=2.3e-13 Score=131.42 Aligned_cols=184 Identities=12% Similarity=0.106 Sum_probs=126.1
Q ss_pred hhhcccccccccCcccccccccccchhhhcccc----CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHH
Q 023703 65 SWTKSLCISISQGHMLNHVEDLKSEPVEENDKY----LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQ 139 (278)
Q Consensus 65 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~ 139 (278)
+|...+ .+.++.++|+. +++. +++.+... .++.+|||+|||+|.+++.++.. +..+|+|+|+|+.+++.|+
T Consensus 84 F~~l~~--~V~p~VLIPRp-eTE~-lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~ 159 (1082)
T PLN02672 84 RKKLTM--MEIPSIFIPED-WSFT-FYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAW 159 (1082)
T ss_pred ecCCce--eeCCCcccCch-hHHH-HHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence 444444 67888888875 2222 22222211 13468999999999999999987 3358999999999999999
Q ss_pred HHhhhCCC----------------cceEEEEccccCCccC--CCccEEEeCCccce------------------------
Q 023703 140 SLANRDGF----------------SCIKFLVDDVLDTKLE--RQFQLVMDKGTLDA------------------------ 177 (278)
Q Consensus 140 ~~~~~~~~----------------~~~~~~~~d~~~~~~~--~~fD~v~~~~~~~~------------------------ 177 (278)
+|++.+++ .+++++++|+.+.... .+||+|++|+++-.
T Consensus 160 ~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~ 239 (1082)
T PLN02672 160 INLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLS 239 (1082)
T ss_pred HHHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccC
Confidence 99987643 2589999999875432 37999999998621
Q ss_pred --ecc-----CCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHH-HHHhhhh-------hcccccc---cchhhhc
Q 023703 178 --IGL-----HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELV-HEVSNLS-------QRRIGVS---QEHEIKD 239 (278)
Q Consensus 178 --~~~-----~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~---~~~~~~~ 239 (278)
..+ +.++..-...++.++.++|+|||.+++.....+.+... ..+.... ..++.-. +...+..
T Consensus 240 p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~~v~~~l~~~~gf~~~~~~~~~~~~~~~~~~~~~~~ 319 (1082)
T PLN02672 240 NYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQAVCERLFERRGFRITKLWQTKINQAADTDISALVE 319 (1082)
T ss_pred ccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHHHCCCCeeEEeeehhhhccccchHHHHH
Confidence 000 13444455778889999999999999998888777766 3554322 1111111 2223366
Q ss_pred ccccCCCCceeee
Q 023703 240 EEACREPPFRYLN 252 (278)
Q Consensus 240 ~~~~~~~~~~~~~ 252 (278)
++..+++.|+++-
T Consensus 320 ~~~~~~~~~~~~~ 332 (1082)
T PLN02672 320 IEKNSRHRFEFFM 332 (1082)
T ss_pred HhhcCccceeeee
Confidence 7777888888874
No 98
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.51 E-value=2.3e-13 Score=109.61 Aligned_cols=106 Identities=20% Similarity=0.243 Sum_probs=82.5
Q ss_pred ccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc--cCCCccEEEeC
Q 023703 96 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDK 172 (278)
Q Consensus 96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~fD~v~~~ 172 (278)
...++.+|||+|||+|.++..++.. +..+|+++|+|+.+++.++++++..++.+++++.+|+.+.. ....+|.++..
T Consensus 37 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~ 116 (196)
T PRK07402 37 RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIE 116 (196)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEE
Confidence 4457789999999999999998865 23589999999999999999999888777999999986521 12335655432
Q ss_pred CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703 173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 212 (278)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 212 (278)
. ......+++++.++|+|||.+++...+.
T Consensus 117 ~-----------~~~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 117 G-----------GRPIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred C-----------CcCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 1 1134567799999999999999987654
No 99
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.51 E-value=3.5e-13 Score=111.77 Aligned_cols=108 Identities=22% Similarity=0.322 Sum_probs=88.9
Q ss_pred CCCeEEEEecCCCHHHHHHhhCC--CCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCcc-CCCccEEEeCCc
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL-ERQFQLVMDKGT 174 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~~-~~~fD~v~~~~~ 174 (278)
++.+|||+|||+|.++..++..+ ..+++++|+++.+++.+++++...+. .++.+..+|+.+.+. .++||+|++...
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence 56799999999999999998875 36899999999999999999876543 358999999987654 478999998777
Q ss_pred cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703 175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 213 (278)
Q Consensus 175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 213 (278)
++++. +...+++.+.++|+|||.+++.+...+
T Consensus 131 l~~~~-------~~~~~l~~~~~~L~~gG~li~~~~~~~ 162 (239)
T PRK00216 131 LRNVP-------DIDKALREMYRVLKPGGRLVILEFSKP 162 (239)
T ss_pred cccCC-------CHHHHHHHHHHhccCCcEEEEEEecCC
Confidence 66554 566778999999999999988765443
No 100
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.50 E-value=3.3e-13 Score=110.92 Aligned_cols=108 Identities=30% Similarity=0.497 Sum_probs=91.2
Q ss_pred CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc--CCCccEEEeCCccc
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDKGTLD 176 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~v~~~~~~~ 176 (278)
++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++...+..++.+...|+.+... +++||+|++...++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 467999999999999999988865 799999999999999999887765468888898876643 37899999988887
Q ss_pred eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703 177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK 214 (278)
Q Consensus 177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 214 (278)
++. +...+++.+.++|+|||.+++...+.+.
T Consensus 124 ~~~-------~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 154 (224)
T TIGR01983 124 HVP-------DPQAFIRACAQLLKPGGILFFSTINRTP 154 (224)
T ss_pred hCC-------CHHHHHHHHHHhcCCCcEEEEEecCCCc
Confidence 765 5667889999999999999998776543
No 101
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.50 E-value=1.8e-13 Score=129.51 Aligned_cols=142 Identities=17% Similarity=0.147 Sum_probs=104.3
Q ss_pred ccccCcccccccccccchhhhccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc--ce
Q 023703 73 SISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CI 150 (278)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~--~~ 150 (278)
...+|.+.++... ...+....++++|||+|||+|.+++.++..|..+|+++|+|+.+++.|++|++.+++. ++
T Consensus 517 ~~~tG~flDqr~~-----R~~~~~~~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v 591 (702)
T PRK11783 517 YLDTGLFLDHRPT-----RRMIGQMAKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQH 591 (702)
T ss_pred CCcceECHHHHHH-----HHHHHHhcCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccce
Confidence 3445556554321 1223333467899999999999999999988768999999999999999999999885 59
Q ss_pred EEEEccccCCc--cCCCccEEEeCCccceeccC----CCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHH
Q 023703 151 KFLVDDVLDTK--LERQFQLVMDKGTLDAIGLH----PDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH 219 (278)
Q Consensus 151 ~~~~~d~~~~~--~~~~fD~v~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 219 (278)
+++++|+.+.. ..++||+|++++++-.-.-. .........++..+.++|+|||.++++++.........
T Consensus 592 ~~i~~D~~~~l~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~ 666 (702)
T PRK11783 592 RLIQADCLAWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEE 666 (702)
T ss_pred EEEEccHHHHHHHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHH
Confidence 99999997643 25689999999876321100 01123445677889999999999999887665544333
No 102
>PRK04266 fibrillarin; Provisional
Probab=99.50 E-value=6.8e-13 Score=108.53 Aligned_cols=103 Identities=14% Similarity=0.198 Sum_probs=79.8
Q ss_pred cccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC----ccCCCccEE
Q 023703 95 DKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT----KLERQFQLV 169 (278)
Q Consensus 95 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~----~~~~~fD~v 169 (278)
..+.++.+|||+|||+|.++..+++. +..+|+++|+++.+++.+.++++.. .++.++.+|.... ...++||+|
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~~~~l~~~~D~i 145 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPERYAHVVEKVDVI 145 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcchhhhccccCCEE
Confidence 34568889999999999999999987 3238999999999999887776544 5789999998753 124569998
Q ss_pred EeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703 170 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 208 (278)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 208 (278)
++... .+.....+++++.++|||||.++++
T Consensus 146 ~~d~~---------~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 146 YQDVA---------QPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred EECCC---------ChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 86422 1223345679999999999999994
No 103
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.50 E-value=1.3e-13 Score=115.68 Aligned_cols=107 Identities=15% Similarity=0.213 Sum_probs=82.6
Q ss_pred CCCeEEEEecCCCH----HHHHHhhCC------CCcEEEEeCChHHHHHHHHHhhh----CC------------------
Q 023703 99 SSWSVLDIGTGNGL----LLQELSKQG------FSDLTGVDYSEDAINLAQSLANR----DG------------------ 146 (278)
Q Consensus 99 ~~~~vLDiGcG~G~----~~~~l~~~~------~~~v~~~D~s~~~i~~a~~~~~~----~~------------------ 146 (278)
++.+|+|+|||+|. +++.+++.. ..+|+|+|+|+.+++.|++.... .+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 455555531 13799999999999999986410 00
Q ss_pred ----C-cceEEEEccccCCcc-CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 147 ----F-SCIKFLVDDVLDTKL-ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 147 ----~-~~~~~~~~d~~~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
+ .++.|.+.|+.+.++ .++||+|+|..++.++. ......+++++.++|+|||.+++...
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~-----~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFD-----EPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCC-----HHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 1 258999999998765 68899999988886663 34667888999999999999998643
No 104
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.50 E-value=4.4e-13 Score=120.28 Aligned_cols=138 Identities=19% Similarity=0.222 Sum_probs=101.2
Q ss_pred hhhccccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCc---cCCC
Q 023703 91 VEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK---LERQ 165 (278)
Q Consensus 91 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~---~~~~ 165 (278)
+.......++.+|||+|||+|..+..++.. +..+|+++|+++.+++.++++++..|+. .+.+..+|..... ..++
T Consensus 230 ~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~ 309 (426)
T TIGR00563 230 VATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQ 309 (426)
T ss_pred HHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccc
Confidence 333445567899999999999999999886 3348999999999999999999998875 1334667766543 2567
Q ss_pred ccEEEeCCccceecc---CCC-----Ch-------hhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhhhhhcc
Q 023703 166 FQLVMDKGTLDAIGL---HPD-----GP-------LKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRR 228 (278)
Q Consensus 166 fD~v~~~~~~~~~~~---~~~-----~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~ 228 (278)
||.|+++.+...... ++. .+ .....+|.++.++|||||.+++++|+...++....+..+-.++
T Consensus 310 fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~ 387 (426)
T TIGR00563 310 FDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEH 387 (426)
T ss_pred cCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhC
Confidence 999998766543321 111 11 1135788999999999999999999987766666665554433
No 105
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.50 E-value=4.1e-13 Score=104.04 Aligned_cols=108 Identities=19% Similarity=0.237 Sum_probs=91.7
Q ss_pred ccccCCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCC-CccEEEe
Q 023703 94 NDKYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLER-QFQLVMD 171 (278)
Q Consensus 94 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~-~fD~v~~ 171 (278)
...+.++.+++|||||||..++.++..+ ..+|+++|-++++++..++|+.+.+++|+.++.+|+.+...+. ++|.|+.
T Consensus 29 ~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFI 108 (187)
T COG2242 29 KLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFI 108 (187)
T ss_pred hhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEE
Confidence 3556788999999999999999999553 3499999999999999999999999999999999998764432 7999998
Q ss_pred CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703 172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 212 (278)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 212 (278)
.+. - ....+++.+...|||||++++.....
T Consensus 109 GGg-~----------~i~~ile~~~~~l~~ggrlV~naitl 138 (187)
T COG2242 109 GGG-G----------NIEEILEAAWERLKPGGRLVANAITL 138 (187)
T ss_pred CCC-C----------CHHHHHHHHHHHcCcCCeEEEEeecH
Confidence 776 2 55667799999999999999976543
No 106
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.49 E-value=8.8e-14 Score=110.88 Aligned_cols=152 Identities=22% Similarity=0.295 Sum_probs=108.6
Q ss_pred cCcHHHHHHHHHHHhhchhccCCccccccCcchhhHHhhhhcccccccccCcccccccccccchhhhccccCCCCeEEEE
Q 023703 27 LGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDI 106 (278)
Q Consensus 27 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDi 106 (278)
.....|||.+|.....+|. ..++|......+. . .. .. ....+||++
T Consensus 33 ~~~~k~wD~fy~~~~~rFf----kdR~wL~~Efpel----~------------------------~~-~~-~~~~~ilEv 78 (264)
T KOG2361|consen 33 REASKYWDTFYKIHENRFF----KDRNWLLREFPEL----L------------------------PV-DE-KSAETILEV 78 (264)
T ss_pred cchhhhhhhhhhhcccccc----chhHHHHHhhHHh----h------------------------Cc-cc-cChhhheee
Confidence 3456799999999887764 4455553331111 0 00 00 122389999
Q ss_pred ecCCCHHHHHHhhCCC---CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-----cCCCccEEEeCCcccee
Q 023703 107 GTGNGLLLQELSKQGF---SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----LERQFQLVMDKGTLDAI 178 (278)
Q Consensus 107 GcG~G~~~~~l~~~~~---~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----~~~~fD~v~~~~~~~~~ 178 (278)
|||.|.....+.+... -.|+++|.||.+++..+++..... .++...+.|+.... ..+++|++++.-++.++
T Consensus 79 GCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi 157 (264)
T KOG2361|consen 79 GCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAI 157 (264)
T ss_pred ccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccchhccCCCCcCccceEEEEEEEecc
Confidence 9999999998888632 279999999999999999876553 35666677776543 35789999987777666
Q ss_pred ccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHH
Q 023703 179 GLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELV 218 (278)
Q Consensus 179 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~ 218 (278)
. ++.....+.++.++|||||.+++.+.....-..+
T Consensus 158 ~-----pek~~~a~~nl~~llKPGG~llfrDYg~~Dlaql 192 (264)
T KOG2361|consen 158 H-----PEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQL 192 (264)
T ss_pred C-----hHHHHHHHHHHHHHhCCCcEEEEeecccchHHHH
Confidence 4 6677788899999999999999998766554433
No 107
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.49 E-value=1.5e-13 Score=119.71 Aligned_cols=136 Identities=23% Similarity=0.291 Sum_probs=106.0
Q ss_pred cccccCcccccccccccchhhhccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc--c
Q 023703 72 ISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--C 149 (278)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~--~ 149 (278)
..+.+|.+.++... ...+.....|++|||+.|-||.++++.+..|+++|++||.|..+++.|++|++.+|++ .
T Consensus 195 ~g~kTGfFlDqR~~-----R~~l~~~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~ 269 (393)
T COG1092 195 DGLKTGFFLDQRDN-----RRALGELAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDR 269 (393)
T ss_pred CcccceeeHHhHHH-----HHHHhhhccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccc
Confidence 45667777765422 2233344458999999999999999999999889999999999999999999999985 3
Q ss_pred eEEEEccccCCcc-----CCCccEEEeCCccceeccC----CCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703 150 IKFLVDDVLDTKL-----ERQFQLVMDKGTLDAIGLH----PDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK 214 (278)
Q Consensus 150 ~~~~~~d~~~~~~-----~~~fD~v~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 214 (278)
+.++++|++++-. ..+||+|+.+++- +.-. .....+...++..+.++|+|||+++++++....
T Consensus 270 ~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPs--F~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~ 341 (393)
T COG1092 270 HRFIVGDVFKWLRKAERRGEKFDLIILDPPS--FARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHF 341 (393)
T ss_pred eeeehhhHHHHHHHHHhcCCcccEEEECCcc--cccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCcc
Confidence 8899999998632 3589999988763 2111 122345567889999999999999999876654
No 108
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.49 E-value=4.9e-13 Score=109.69 Aligned_cols=106 Identities=25% Similarity=0.342 Sum_probs=87.5
Q ss_pred CCCeEEEEecCCCHHHHHHhhCCC--CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCcc
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTL 175 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~ 175 (278)
++.+|||+|||+|.++..+++... .+++++|+++.+++.++++.. ...++.+..+|+.+.+. +++||+|+++..+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFEDNSFDAVTIAFGL 116 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCCCCcEEEEEEeeee
Confidence 677999999999999999988843 389999999999999999875 22468999999988654 4689999987776
Q ss_pred ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703 176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 213 (278)
Q Consensus 176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 213 (278)
+++. +...+++++.++|+|||++++.+....
T Consensus 117 ~~~~-------~~~~~l~~~~~~L~~gG~l~~~~~~~~ 147 (223)
T TIGR01934 117 RNVT-------DIQKALREMYRVLKPGGRLVILEFSKP 147 (223)
T ss_pred CCcc-------cHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence 5543 566788999999999999998765443
No 109
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.48 E-value=2.7e-13 Score=109.26 Aligned_cols=103 Identities=22% Similarity=0.297 Sum_probs=82.9
Q ss_pred ccCCCCeEEEEecCCCHHHHHHhhC-CC-CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-cCCCccEEEeC
Q 023703 96 KYLSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-LERQFQLVMDK 172 (278)
Q Consensus 96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~ 172 (278)
.+.++.+|||||||+|..+..++.. +. ..|+++|..+..++.|++++...+..++.++++|..... ...+||.|+..
T Consensus 69 ~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v~ 148 (209)
T PF01135_consen 69 DLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIVT 148 (209)
T ss_dssp TC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEES
T ss_pred hcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEEe
Confidence 3778999999999999999999886 32 269999999999999999999999889999999987643 35789999998
Q ss_pred CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703 173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 211 (278)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 211 (278)
.....++ ..+.+.|++||++++....
T Consensus 149 ~a~~~ip-------------~~l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 149 AAVPEIP-------------EALLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp SBBSS---------------HHHHHTEEEEEEEEEEESS
T ss_pred eccchHH-------------HHHHHhcCCCcEEEEEEcc
Confidence 8776665 6788899999999997654
No 110
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.47 E-value=2.1e-13 Score=114.41 Aligned_cols=136 Identities=22% Similarity=0.264 Sum_probs=96.9
Q ss_pred cccccCcccccccccccchhhhccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc--c
Q 023703 72 ISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--C 149 (278)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~--~ 149 (278)
....+|.++++++.+ ..+....++++|||+.|-||.++...+..|+.+|+.+|.|..+++.+++|+..++++ .
T Consensus 101 ~gqktGlFlDqR~nR-----~~v~~~~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~ 175 (286)
T PF10672_consen 101 DGQKTGLFLDQRENR-----KWVRKYAKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDR 175 (286)
T ss_dssp SSSSTSS-GGGHHHH-----HHHHHHCTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTC
T ss_pred CCCcceEcHHHHhhH-----HHHHHHcCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccc
Confidence 456778888766433 122333568899999999999999999988889999999999999999999999874 5
Q ss_pred eEEEEccccCCc----cCCCccEEEeCCccceeccCCCC-hhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703 150 IKFLVDDVLDTK----LERQFQLVMDKGTLDAIGLHPDG-PLKRIMYWDSVSKLVAPGGLLVITSCNSTK 214 (278)
Q Consensus 150 ~~~~~~d~~~~~----~~~~fD~v~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 214 (278)
+++++.|+.+.. ..++||+|+++++- +.-.... ..+...++..+.++|+|||.++++++++..
T Consensus 176 ~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPs--F~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i 243 (286)
T PF10672_consen 176 HRFIQGDVFKFLKRLKKGGRFDLIILDPPS--FAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHI 243 (286)
T ss_dssp EEEEES-HHHHHHHHHHTT-EEEEEE--SS--EESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS
T ss_pred eEEEecCHHHHHHHHhcCCCCCEEEECCCC--CCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 899999998742 25789999998773 2211111 234567789999999999999988876544
No 111
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.46 E-value=1.5e-12 Score=111.35 Aligned_cols=101 Identities=20% Similarity=0.137 Sum_probs=76.9
Q ss_pred CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCC-----CcceEEEEccccCCccCCCccEEEeCC
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-----FSCIKFLVDDVLDTKLERQFQLVMDKG 173 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~-----~~~~~~~~~d~~~~~~~~~fD~v~~~~ 173 (278)
++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.+++++...+ ..++.+...|+.+. +++||+|++..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~~~fD~Vv~~~ 220 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--SGKYDTVTCLD 220 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--CCCcCEEEEcC
Confidence 577999999999999999999875 89999999999999999987642 23578888998653 57899999988
Q ss_pred ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703 174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 208 (278)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 208 (278)
++.|+. ......+++.+.+ +.+||.++..
T Consensus 221 vL~H~p-----~~~~~~ll~~l~~-l~~g~liIs~ 249 (315)
T PLN02585 221 VLIHYP-----QDKADGMIAHLAS-LAEKRLIISF 249 (315)
T ss_pred EEEecC-----HHHHHHHHHHHHh-hcCCEEEEEe
Confidence 876543 1233445566664 4566654433
No 112
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.46 E-value=8.6e-13 Score=114.72 Aligned_cols=115 Identities=11% Similarity=0.074 Sum_probs=89.4
Q ss_pred CCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC---ccCCCccEEEeCCc
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT---KLERQFQLVMDKGT 174 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~---~~~~~fD~v~~~~~ 174 (278)
.+..+||||||+|.++..+|.. +...++|+|+++.+++.|.+++...+++|+.++++|+... ..++++|.|+.+.+
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 4558999999999999999987 3358999999999999999999999988999999998653 24678999997644
Q ss_pred cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703 175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK 214 (278)
Q Consensus 175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 214 (278)
..+..-.+ .......+++.+.++|+|||.+.+.+-...-
T Consensus 202 dPW~KkrH-RRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y 240 (390)
T PRK14121 202 VPWDKKPH-RRVISEDFLNEALRVLKPGGTLELRTDSELY 240 (390)
T ss_pred CCccccch-hhccHHHHHHHHHHHcCCCcEEEEEEECHHH
Confidence 32211000 1112257889999999999999998765543
No 113
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.46 E-value=6.9e-13 Score=112.19 Aligned_cols=97 Identities=22% Similarity=0.377 Sum_probs=76.8
Q ss_pred CCCeEEEEecCCCHHHHHHhhC-C---CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCC
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQ-G---FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKG 173 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~-~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~ 173 (278)
+..+|||+|||+|.++..++.. + ...++|+|+|+.+++.|+++. +++.+.++|+.+.++ +++||+|++..
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~~~~~~~d~~~lp~~~~sfD~I~~~~ 159 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQVTFCVASSHRLPFADQSLDAIIRIY 159 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CCCeEEEeecccCCCcCCceeEEEEec
Confidence 4468999999999999988865 1 136999999999999998753 468899999988765 57899999743
Q ss_pred ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703 174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK 214 (278)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 214 (278)
. + ..++++.++|||||.+++.+++...
T Consensus 160 ~-------~-------~~~~e~~rvLkpgG~li~~~p~~~~ 186 (272)
T PRK11088 160 A-------P-------CKAEELARVVKPGGIVITVTPGPRH 186 (272)
T ss_pred C-------C-------CCHHHHHhhccCCCEEEEEeCCCcc
Confidence 2 1 1137899999999999998876543
No 114
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.46 E-value=1e-12 Score=113.17 Aligned_cols=108 Identities=19% Similarity=0.190 Sum_probs=87.0
Q ss_pred ccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCccCCCccEEEeCC
Q 023703 96 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKG 173 (278)
Q Consensus 96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~ 173 (278)
...++.+|||||||+|.++..++++ +..+++++|. +.+++.+++++...++. +++++.+|+.+...+ .+|+|+...
T Consensus 146 ~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~~~ 223 (306)
T TIGR02716 146 KLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLFCR 223 (306)
T ss_pred CCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEeEh
Confidence 3456789999999999999999988 3348999997 78999999999888774 599999999865443 379998766
Q ss_pred ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
+++.. +......+++++.++|+|||++++.+.
T Consensus 224 ~lh~~-----~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 224 ILYSA-----NEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhhcC-----ChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 65433 234556788999999999999999864
No 115
>PHA03412 putative methyltransferase; Provisional
Probab=99.44 E-value=7.4e-13 Score=107.10 Aligned_cols=101 Identities=17% Similarity=0.244 Sum_probs=78.7
Q ss_pred CCCeEEEEecCCCHHHHHHhhC----CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCc
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQ----GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGT 174 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~----~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~ 174 (278)
.+.+|||+|||+|.++..++.. +..+|+++|+++.+++.|+++. .++.++++|+.....+++||+|++|++
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~~~~~FDlIIsNPP 123 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTEFDTLFDMAISNPP 123 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcccccCCccEEEECCC
Confidence 3679999999999999988864 2348999999999999999875 357899999987666679999999999
Q ss_pred cceeccC-----CCChhhHHHHHHHHHhcccCCcE
Q 023703 175 LDAIGLH-----PDGPLKRIMYWDSVSKLVAPGGL 204 (278)
Q Consensus 175 ~~~~~~~-----~~~~~~~~~~l~~~~~~LkpgG~ 204 (278)
|..+... +.+......+++.+.+++++|+.
T Consensus 124 Y~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 124 FGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 9654321 11223455688888886666664
No 116
>PHA03411 putative methyltransferase; Provisional
Probab=99.44 E-value=9.7e-13 Score=108.83 Aligned_cols=106 Identities=15% Similarity=0.218 Sum_probs=83.0
Q ss_pred CCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccce
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA 177 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~ 177 (278)
...+|||+|||+|.++..++.+ +..+|+++|+++.+++.+++++ +++.++++|+.+...+.+||+|+++++|.+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~ 138 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFESNEKFDVVISNPPFGK 138 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcccCCCcEEEEcCCccc
Confidence 4569999999999999988775 2358999999999999999864 368899999998766678999999999976
Q ss_pred eccCCCCh-----------h--hHHHHHHHHHhcccCCcEEEEEe
Q 023703 178 IGLHPDGP-----------L--KRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 178 ~~~~~~~~-----------~--~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
........ . ....++.....+|+|+|.+++..
T Consensus 139 l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y 183 (279)
T PHA03411 139 INTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY 183 (279)
T ss_pred cCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE
Confidence 53211000 0 13567788899999999887763
No 117
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.44 E-value=9e-13 Score=120.22 Aligned_cols=104 Identities=21% Similarity=0.357 Sum_probs=84.2
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC--c-cCCCccEEEeCCc
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT--K-LERQFQLVMDKGT 174 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~--~-~~~~fD~v~~~~~ 174 (278)
.++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.+++... ..+++.++++|+... + ++++||+|+++.+
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~--~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~ 112 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESING--HYKNVKFMCADVTSPDLNISDGSVDLIFSNWL 112 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhc--cCCceEEEEecccccccCCCCCCEEEEehhhh
Confidence 356799999999999999999985 589999999999998765332 225789999999642 3 3578999999988
Q ss_pred cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
++++. ......+++++.++|||||++++.+
T Consensus 113 l~~l~-----~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 113 LMYLS-----DKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred HHhCC-----HHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 87664 3346788899999999999999864
No 118
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.44 E-value=9.6e-13 Score=108.52 Aligned_cols=112 Identities=18% Similarity=0.286 Sum_probs=89.6
Q ss_pred cchhhhccccCCCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCcc--
Q 023703 88 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL-- 162 (278)
Q Consensus 88 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~-- 162 (278)
..++..+....++++|||+|||+|..++.++.. +..+|+++|+++.+++.|+++++..++. +++++.+|+.+...
T Consensus 57 g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l 136 (234)
T PLN02781 57 GLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQL 136 (234)
T ss_pred HHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHH
Confidence 445566666677889999999999988888765 2358999999999999999999999885 49999999977421
Q ss_pred -----CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 163 -----ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 163 -----~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
.++||+|+.+..- .....++..+.+.|+|||.+++..
T Consensus 137 ~~~~~~~~fD~VfiDa~k----------~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 137 LNNDPKPEFDFAFVDADK----------PNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred HhCCCCCCCCEEEECCCH----------HHHHHHHHHHHHhcCCCeEEEEEc
Confidence 3689999875431 244567799999999999998864
No 119
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.43 E-value=1.9e-12 Score=105.05 Aligned_cols=113 Identities=24% Similarity=0.300 Sum_probs=80.2
Q ss_pred CCCCeEEEEecCCCHHHHHHhhC-CC-CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc---------cCCCc
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---------LERQF 166 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~---------~~~~f 166 (278)
.++.+|||+|||+|.++..+++. +. ..|+|+|+++. ...+++.++++|+.+.. .+++|
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~ 118 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLKALLERVGDSKV 118 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHHHHHHHHhCCCCC
Confidence 56789999999999999999887 22 38999999981 12356899999998852 25789
Q ss_pred cEEEeCCccceeccCCC-Ch----hhHHHHHHHHHhcccCCcEEEEEecCC-ChHHHHHHHh
Q 023703 167 QLVMDKGTLDAIGLHPD-GP----LKRIMYWDSVSKLVAPGGLLVITSCNS-TKDELVHEVS 222 (278)
Q Consensus 167 D~v~~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~~~~ 222 (278)
|+|+++....... .+. +. .....+++.+.++|+|||.+++..... ...+++..+.
T Consensus 119 D~V~S~~~~~~~g-~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~ 179 (209)
T PRK11188 119 QVVMSDMAPNMSG-TPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIR 179 (209)
T ss_pred CEEecCCCCccCC-ChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHH
Confidence 9999976543321 110 00 012467899999999999999976544 3345554443
No 120
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.43 E-value=2.8e-12 Score=91.37 Aligned_cols=101 Identities=28% Similarity=0.420 Sum_probs=83.3
Q ss_pred eEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc--cCCCccEEEeCCccceec
Q 023703 102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKGTLDAIG 179 (278)
Q Consensus 102 ~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~fD~v~~~~~~~~~~ 179 (278)
+|+|+|||+|.++..++..+..+++++|+++.+++.+++.....+..++.+...|..+.. ..++||+|+++.+++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~- 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL- 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh-
Confidence 489999999999999988544699999999999999986544444456899999998875 35789999999888663
Q ss_pred cCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703 180 LHPDGPLKRIMYWDSVSKLVAPGGLLVIT 208 (278)
Q Consensus 180 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 208 (278)
......+++.+.+.|+|||.+++.
T Consensus 80 -----~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -----VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -----hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 236677889999999999999876
No 121
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.42 E-value=2.7e-12 Score=105.92 Aligned_cols=99 Identities=23% Similarity=0.276 Sum_probs=78.2
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCccCCCccEEEeCCccc
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTLD 176 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~fD~v~~~~~~~ 176 (278)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|++++...+. .++.+..+|+.. .+++||+|++..++.
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~fD~v~~~~~l~ 138 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES--LLGRFDTVVCLDVLI 138 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh--ccCCcCEEEEcchhh
Confidence 4677999999999999999999875 799999999999999999887765 368999999532 357899999988875
Q ss_pred eeccCCCChhhHHHHHHHHHhcccCCcE
Q 023703 177 AIGLHPDGPLKRIMYWDSVSKLVAPGGL 204 (278)
Q Consensus 177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 204 (278)
++. ......+++.+.+.+++++.
T Consensus 139 ~~~-----~~~~~~~l~~l~~~~~~~~~ 161 (230)
T PRK07580 139 HYP-----QEDAARMLAHLASLTRGSLI 161 (230)
T ss_pred cCC-----HHHHHHHHHHHHhhcCCeEE
Confidence 542 23456677888887654443
No 122
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.41 E-value=2.3e-12 Score=102.74 Aligned_cols=121 Identities=11% Similarity=-0.014 Sum_probs=89.2
Q ss_pred ccccchhhhccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCc--
Q 023703 85 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK-- 161 (278)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~-- 161 (278)
.....+...+....++.+|||++||+|.+++.++.+|+++|+++|.++.+++.+++|++.+++. +++++++|+.+..
T Consensus 35 ~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~ 114 (189)
T TIGR00095 35 VVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKF 114 (189)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHH
Confidence 3333444444444578899999999999999999998779999999999999999999998875 5899999996531
Q ss_pred c--C-CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703 162 L--E-RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 211 (278)
Q Consensus 162 ~--~-~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 211 (278)
. . ..||+|+.+++|..-. .......+.+ ..+|+++|.+++....
T Consensus 115 ~~~~~~~~dvv~~DPPy~~~~-----~~~~l~~l~~-~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 115 LAKKPTFDNVIYLDPPFFNGA-----LQALLELCEN-NWILEDTVLIVVEEDR 161 (189)
T ss_pred hhccCCCceEEEECcCCCCCc-----HHHHHHHHHH-CCCCCCCeEEEEEecC
Confidence 1 2 2489999999885311 1122222222 3578999988887654
No 123
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.41 E-value=5.2e-13 Score=105.63 Aligned_cols=128 Identities=16% Similarity=0.187 Sum_probs=95.2
Q ss_pred cccccccccccchhhhcccc-CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEc
Q 023703 78 HMLNHVEDLKSEPVEENDKY-LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVD 155 (278)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~ 155 (278)
...|+.+.....+...+... .++.++||+.||||.+++..+.+|+++|+.+|.++.++...++|++..+..+ +.++..
T Consensus 20 ~~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~ 99 (183)
T PF03602_consen 20 NTRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKG 99 (183)
T ss_dssp TS-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEES
T ss_pred CcCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeecc
Confidence 44555556666666666666 6889999999999999999999999999999999999999999999988765 889999
Q ss_pred cccCCc-----cCCCccEEEeCCccceeccCCCChhhHHHHHHHHH--hcccCCcEEEEEecCC
Q 023703 156 DVLDTK-----LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVS--KLVAPGGLLVITSCNS 212 (278)
Q Consensus 156 d~~~~~-----~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~~ 212 (278)
|..... ...+||+|+.+++|..-. ....+++.+. .+|+++|.+++.....
T Consensus 100 d~~~~l~~~~~~~~~fDiIflDPPY~~~~-------~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 100 DAFKFLLKLAKKGEKFDIIFLDPPYAKGL-------YYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp SHHHHHHHHHHCTS-EEEEEE--STTSCH-------HHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CHHHHHHhhcccCCCceEEEECCCcccch-------HHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 976532 257899999999986432 1345556665 7999999999987655
No 124
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.40 E-value=2.7e-12 Score=110.05 Aligned_cols=101 Identities=18% Similarity=0.242 Sum_probs=81.5
Q ss_pred ccCCCCeEEEEecCCCHHHHHHhhCC-C-CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeC
Q 023703 96 KYLSSWSVLDIGTGNGLLLQELSKQG-F-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDK 172 (278)
Q Consensus 96 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~ 172 (278)
...++.+|||+|||+|.++..+++.. . ..|+++|+++.+++.|+++++..+.+++.++.+|..+... .++||+|++.
T Consensus 77 ~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~ 156 (322)
T PRK13943 77 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVT 156 (322)
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEEC
Confidence 34577899999999999999998862 1 2699999999999999999998888789999999876543 3679999986
Q ss_pred CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
.....++ ..+.+.|+|||++++..
T Consensus 157 ~g~~~ip-------------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 157 VGVDEVP-------------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred CchHHhH-------------HHHHHhcCCCCEEEEEe
Confidence 5443322 45778999999988864
No 125
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.40 E-value=3e-12 Score=108.53 Aligned_cols=132 Identities=18% Similarity=0.160 Sum_probs=104.8
Q ss_pred cccccchhhhccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEc-cccCCcc
Q 023703 84 EDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD-DVLDTKL 162 (278)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~-d~~~~~~ 162 (278)
.+..+..+-.+.+..+|..|||..||||.+++.+.-.|. +++|+|++..|++-|+.|++..+++...+... |+...++
T Consensus 182 ~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl 260 (347)
T COG1041 182 DPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPL 260 (347)
T ss_pred CHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCC
Confidence 344444555667778999999999999999999999986 89999999999999999999998877666555 9999887
Q ss_pred CC-CccEEEeCCccceecc-CCCC-hhhHHHHHHHHHhcccCCcEEEEEecCCChHH
Q 023703 163 ER-QFQLVMDKGTLDAIGL-HPDG-PLKRIMYWDSVSKLVAPGGLLVITSCNSTKDE 216 (278)
Q Consensus 163 ~~-~fD~v~~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 216 (278)
++ ++|.|++.+++..-.. .... ..-...+++.+.++|++||.+++..+-.+..+
T Consensus 261 ~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~~~~ 317 (347)
T COG1041 261 RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDPRHE 317 (347)
T ss_pred CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcchhh
Confidence 65 4999999999864431 1222 23356888999999999999999988444433
No 126
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.40 E-value=9.2e-12 Score=107.45 Aligned_cols=111 Identities=22% Similarity=0.187 Sum_probs=84.1
Q ss_pred CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc--cCCCccEEEeCCccc
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKGTLD 176 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~fD~v~~~~~~~ 176 (278)
++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|+++++.+++.+++++++|+.+.. ..++||+|+.+++-.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~ 251 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRR 251 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCC
Confidence 56899999999999999999986 589999999999999999999999878999999997753 235799999987743
Q ss_pred eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHH
Q 023703 177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHE 220 (278)
Q Consensus 177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 220 (278)
.+. ..+ .++...++|+++++++....+.......
T Consensus 252 G~~---------~~~-~~~l~~~~~~~ivyvsc~p~t~~rd~~~ 285 (315)
T PRK03522 252 GIG---------KEL-CDYLSQMAPRFILYSSCNAQTMAKDLAH 285 (315)
T ss_pred Ccc---------HHH-HHHHHHcCCCeEEEEECCcccchhHHhh
Confidence 221 111 2223336788777776655555544443
No 127
>PRK04457 spermidine synthase; Provisional
Probab=99.40 E-value=1.9e-12 Score=108.57 Aligned_cols=112 Identities=15% Similarity=0.186 Sum_probs=85.0
Q ss_pred cCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCc--cCCCccEEEeC
Q 023703 97 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK--LERQFQLVMDK 172 (278)
Q Consensus 97 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~--~~~~fD~v~~~ 172 (278)
..++.+|||||||+|.++..++.. +..+++++|+++.+++.|++++...+. ++++++.+|..+.. .+++||+|+.+
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 345679999999999999998876 445899999999999999999865543 56999999987642 24689999975
Q ss_pred CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703 173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 211 (278)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 211 (278)
. ++.. ..+.......+++.+.+.|+|||++++....
T Consensus 144 ~-~~~~--~~~~~l~t~efl~~~~~~L~pgGvlvin~~~ 179 (262)
T PRK04457 144 G-FDGE--GIIDALCTQPFFDDCRNALSSDGIFVVNLWS 179 (262)
T ss_pred C-CCCC--CCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence 3 2211 1112223467889999999999999986443
No 128
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=2e-11 Score=94.33 Aligned_cols=84 Identities=27% Similarity=0.368 Sum_probs=73.4
Q ss_pred cccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCc
Q 023703 95 DKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGT 174 (278)
Q Consensus 95 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~ 174 (278)
.....+++|+|+|||||.+++..+..|+.+|+|+|+++++++.+++|....+ .++.|..+|+.+. ..++|.++.|++
T Consensus 41 ~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~-g~v~f~~~dv~~~--~~~~dtvimNPP 117 (198)
T COG2263 41 RGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL-GDVEFVVADVSDF--RGKFDTVIMNPP 117 (198)
T ss_pred cCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC-CceEEEEcchhhc--CCccceEEECCC
Confidence 3446788999999999999999999998899999999999999999998844 5799999999874 577999999999
Q ss_pred cceeccC
Q 023703 175 LDAIGLH 181 (278)
Q Consensus 175 ~~~~~~~ 181 (278)
|....-|
T Consensus 118 FG~~~rh 124 (198)
T COG2263 118 FGSQRRH 124 (198)
T ss_pred Ccccccc
Confidence 9766434
No 129
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.39 E-value=5e-12 Score=108.34 Aligned_cols=107 Identities=17% Similarity=0.223 Sum_probs=79.4
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCC--CCcEEEEeCChHHHHHHHHHhhhCC-CcceEEEEccccCC-ccCCCc----c-E
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVDDVLDT-KLERQF----Q-L 168 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~~D~s~~~i~~a~~~~~~~~-~~~~~~~~~d~~~~-~~~~~f----D-~ 168 (278)
.++.+|||+|||+|..+..+++.. ..+|+++|+|+.|++.+++++.... --++.++++|+.+. .....+ + +
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 456799999999999999998873 2489999999999999999876532 11467789999873 232222 2 3
Q ss_pred EEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 169 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 169 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
+++..++.++ .+.+...++++++++|+|||.+++..
T Consensus 142 ~~~gs~~~~~-----~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 142 FFPGSTIGNF-----TPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred EEecccccCC-----CHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 3333344333 35677889999999999999999864
No 130
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.39 E-value=1.3e-11 Score=111.26 Aligned_cols=113 Identities=18% Similarity=0.215 Sum_probs=86.9
Q ss_pred cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc----c-CCCccEEEe
Q 023703 97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----L-ERQFQLVMD 171 (278)
Q Consensus 97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~----~-~~~fD~v~~ 171 (278)
..++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++|++.+++++++++++|+.+.. . +++||+|++
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~ 373 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLL 373 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEE
Confidence 3567899999999999999999885 589999999999999999999988888999999997532 1 357999999
Q ss_pred CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHH
Q 023703 172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV 221 (278)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 221 (278)
+++...+ ...++.+.+ ++|+++++++....+....+..+
T Consensus 374 dPPr~g~----------~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L 412 (443)
T PRK13168 374 DPPRAGA----------AEVMQALAK-LGPKRIVYVSCNPATLARDAGVL 412 (443)
T ss_pred CcCCcCh----------HHHHHHHHh-cCCCeEEEEEeChHHhhccHHHH
Confidence 8876422 123344554 68988888776555544444433
No 131
>PRK06202 hypothetical protein; Provisional
Probab=99.38 E-value=6.5e-12 Score=103.83 Aligned_cols=106 Identities=19% Similarity=0.262 Sum_probs=79.1
Q ss_pred CCCCeEEEEecCCCHHHHHHhhC----CC-CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-cCCCccEEEe
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQ----GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-LERQFQLVMD 171 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~----~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~ 171 (278)
.++.+|||+|||+|.++..++.. |. .+|+|+|+|+.+++.|+++.... ++.+...+....+ .+++||+|++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~l~~~~~~fD~V~~ 135 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP---GVTFRQAVSDELVAEGERFDVVTS 135 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC---CCeEEEEecccccccCCCccEEEE
Confidence 45679999999999998888752 32 38999999999999999876543 3555555554433 3578999999
Q ss_pred CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703 172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 213 (278)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 213 (278)
+.+++++. ..+...+++++.++++ |.+++.....+
T Consensus 136 ~~~lhh~~-----d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 136 NHFLHHLD-----DAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred CCeeecCC-----hHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 99988774 2235678899999998 56666665554
No 132
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=1.1e-11 Score=100.47 Aligned_cols=120 Identities=22% Similarity=0.235 Sum_probs=96.0
Q ss_pred hccccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCccCCCccEE
Q 023703 93 ENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLV 169 (278)
Q Consensus 93 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~fD~v 169 (278)
....+.++.+|||.|+|+|.++..|+.. | ..+|+..|+.+...+.|++|++..++.+ +++..+|+.+...++.||.|
T Consensus 88 ~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav 167 (256)
T COG2519 88 ARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAV 167 (256)
T ss_pred HHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccccCEE
Confidence 3356689999999999999999999974 3 3489999999999999999999988877 99999999987766788888
Q ss_pred EeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChH-HHHHHHhhh
Q 023703 170 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD-ELVHEVSNL 224 (278)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~~~~~~ 224 (278)
+...+ ++-.+++.+.++|+|||.+++..++-++- .....+++.
T Consensus 168 ~LDmp------------~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~ 211 (256)
T COG2519 168 FLDLP------------DPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRER 211 (256)
T ss_pred EEcCC------------ChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhc
Confidence 86432 45566699999999999998877655442 333334443
No 133
>PTZ00146 fibrillarin; Provisional
Probab=99.37 E-value=4.1e-11 Score=100.33 Aligned_cols=101 Identities=16% Similarity=0.226 Sum_probs=76.7
Q ss_pred cCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc----cCCCccEEE
Q 023703 97 YLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLVM 170 (278)
Q Consensus 97 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~----~~~~fD~v~ 170 (278)
+.++.+|||+|||+|.++..++.. + ...|+++|+++.+.+.+...++.. +|+.++..|+.... +.+.+|+|+
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~p~~y~~~~~~vDvV~ 207 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARYPQKYRMLVPMVDVIF 207 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccChhhhhcccCCCCEEE
Confidence 478889999999999999999997 3 237999999998765555544332 47889999986532 235799998
Q ss_pred eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703 171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 208 (278)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 208 (278)
++.. . +.+...++.++.++|||||.+++.
T Consensus 208 ~Dva------~---pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 208 ADVA------Q---PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EeCC------C---cchHHHHHHHHHHhccCCCEEEEE
Confidence 8653 1 224455667899999999999994
No 134
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.37 E-value=3.3e-12 Score=99.62 Aligned_cols=100 Identities=21% Similarity=0.276 Sum_probs=80.5
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc---cCCCccEEEeCCc
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LERQFQLVMDKGT 174 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~---~~~~fD~v~~~~~ 174 (278)
.++.+|||+|||.|.+...|.+....+.+|+|+++..+..|.++ .+.++++|+.+-- ++++||.|+.+.+
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-------Gv~Viq~Dld~gL~~f~d~sFD~VIlsqt 84 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-------GVSVIQGDLDEGLADFPDQSFDYVILSQT 84 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-------CCCEEECCHHHhHhhCCCCCccEEehHhH
Confidence 57899999999999999999986435899999999999988762 4778999998742 4789999999999
Q ss_pred cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703 175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK 214 (278)
Q Consensus 175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 214 (278)
++++. ....+|+++.|+ |...+++-+|...
T Consensus 85 LQ~~~-------~P~~vL~EmlRV---gr~~IVsFPNFg~ 114 (193)
T PF07021_consen 85 LQAVR-------RPDEVLEEMLRV---GRRAIVSFPNFGH 114 (193)
T ss_pred HHhHh-------HHHHHHHHHHHh---cCeEEEEecChHH
Confidence 98886 666666777555 6677777666543
No 135
>PRK00811 spermidine synthase; Provisional
Probab=99.37 E-value=6e-12 Score=106.73 Aligned_cols=109 Identities=19% Similarity=0.308 Sum_probs=84.0
Q ss_pred CCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCC-----CcceEEEEccccCCc--cCCCccEEE
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG-----FSCIKFLVDDVLDTK--LERQFQLVM 170 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~-----~~~~~~~~~d~~~~~--~~~~fD~v~ 170 (278)
.+++||+||||+|..+..++++ +..+|+++|+++.+++.|++.+...+ -++++++.+|..... ..++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 4679999999999999999887 55689999999999999999886421 246899999987643 357899999
Q ss_pred eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
++.+-. . .+........+++.+++.|+|||++++...
T Consensus 156 ~D~~dp-~--~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 156 VDSTDP-V--GPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred ECCCCC-C--CchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 864321 1 111122346788999999999999988643
No 136
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.37 E-value=1.1e-11 Score=109.26 Aligned_cols=138 Identities=19% Similarity=0.172 Sum_probs=97.5
Q ss_pred ccccCcccccccccccchhhhccc---cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc
Q 023703 73 SISQGHMLNHVEDLKSEPVEENDK---YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC 149 (278)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~ 149 (278)
.+..+.+..........+...+.. ..++.+|||+|||+|.+++.++..+ .+|+|+|+++.+++.|++|++.+++++
T Consensus 204 ~~~~~~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~ 282 (374)
T TIGR02085 204 VIRPQSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDN 282 (374)
T ss_pred EECCCccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCc
Confidence 444455554444444444443322 2356799999999999999999876 589999999999999999999998878
Q ss_pred eEEEEccccCCcc--CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHH
Q 023703 150 IKFLVDDVLDTKL--ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV 221 (278)
Q Consensus 150 ~~~~~~d~~~~~~--~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 221 (278)
++++.+|+.+... ..+||+|+.+++...+. ..+++.+. .++|+++++++....+.......+
T Consensus 283 ~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G~~---------~~~l~~l~-~~~p~~ivyvsc~p~TlaRDl~~L 346 (374)
T TIGR02085 283 LSFAALDSAKFATAQMSAPELVLVNPPRRGIG---------KELCDYLS-QMAPKFILYSSCNAQTMAKDIAEL 346 (374)
T ss_pred EEEEECCHHHHHHhcCCCCCEEEECCCCCCCc---------HHHHHHHH-hcCCCeEEEEEeCHHHHHHHHHHh
Confidence 9999999976432 25699999988864321 22234443 378988888876555555444444
No 137
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.35 E-value=7.4e-12 Score=100.10 Aligned_cols=115 Identities=19% Similarity=0.223 Sum_probs=78.5
Q ss_pred cccCCCCeEEEEecCCCHHHHHHhhCC--CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc---------cC
Q 023703 95 DKYLSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---------LE 163 (278)
Q Consensus 95 ~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~---------~~ 163 (278)
....++.+|||+|||+|.++..++... ..+|+++|+|+.+ ...++.++++|+.+.. ..
T Consensus 28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~ 96 (188)
T TIGR00438 28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGD 96 (188)
T ss_pred cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCC
Confidence 344678899999999999999888762 3479999999864 1246788888987642 24
Q ss_pred CCccEEEeCCccceec---cC-CCChhhHHHHHHHHHhcccCCcEEEEEecCC-ChHHHHHH
Q 023703 164 RQFQLVMDKGTLDAIG---LH-PDGPLKRIMYWDSVSKLVAPGGLLVITSCNS-TKDELVHE 220 (278)
Q Consensus 164 ~~fD~v~~~~~~~~~~---~~-~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~~ 220 (278)
++||+|+++++.+... .+ .........++..+.++|+|||.+++..... ...+....
T Consensus 97 ~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~ 158 (188)
T TIGR00438 97 DKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNE 158 (188)
T ss_pred CCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHH
Confidence 6799999876422110 00 0111234577899999999999999965433 33444443
No 138
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.34 E-value=3.9e-11 Score=94.27 Aligned_cols=100 Identities=16% Similarity=0.169 Sum_probs=75.8
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccC-CCccEEEeCCccc
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD 176 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~ 176 (278)
.++.+|||+|||+|.++..+++++ .+++++|+++.+++.+++++... ++++++++|+.+.... ..||.|+++.+++
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~--~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~ 88 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAA--DNLTVIHGDALKFDLPKLQPYKVVGNLPYN 88 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccC--CCEEEEECchhcCCccccCCCEEEECCCcc
Confidence 456799999999999999999984 58999999999999999988542 4799999999987654 4699999998885
Q ss_pred eeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703 177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 208 (278)
Q Consensus 177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 208 (278)
.. ......+++. ..+.++|.+++.
T Consensus 89 ~~------~~~i~~~l~~--~~~~~~~~l~~q 112 (169)
T smart00650 89 IS------TPILFKLLEE--PPAFRDAVLMVQ 112 (169)
T ss_pred cH------HHHHHHHHhc--CCCcceEEEEEE
Confidence 21 1122222221 124477888775
No 139
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.33 E-value=7.7e-12 Score=100.53 Aligned_cols=97 Identities=20% Similarity=0.264 Sum_probs=73.6
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccC-Cc--cCCCccEEEeCCc
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD-TK--LERQFQLVMDKGT 174 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~-~~--~~~~fD~v~~~~~ 174 (278)
.++.+|||+|||+|.++..++......++|+|+|+.+++.+++ .+++++++|+.+ .. .+++||+|+++.+
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~-------~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~ 84 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA-------RGVNVIQGDLDEGLEAFPDKSFDYVILSQT 84 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH-------cCCeEEEEEhhhcccccCCCCcCEEEEhhH
Confidence 4667999999999999999987643479999999999998865 246788888865 22 3578999999999
Q ss_pred cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703 175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 211 (278)
Q Consensus 175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 211 (278)
++++. +...+++++.+.++ .+++..++
T Consensus 85 l~~~~-------d~~~~l~e~~r~~~---~~ii~~p~ 111 (194)
T TIGR02081 85 LQATR-------NPEEILDEMLRVGR---HAIVSFPN 111 (194)
T ss_pred hHcCc-------CHHHHHHHHHHhCC---eEEEEcCC
Confidence 98775 56666677776654 45555443
No 140
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.31 E-value=1.4e-11 Score=106.05 Aligned_cols=112 Identities=26% Similarity=0.355 Sum_probs=84.2
Q ss_pred CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC-------CC---cceEEEEccccCCc-----cC
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-------GF---SCIKFLVDDVLDTK-----LE 163 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~-------~~---~~~~~~~~d~~~~~-----~~ 163 (278)
++.+|||+|||-|..+..+...+...++|+|+++.+|+.|+++++.. .. -...++.+|..... .+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 67899999999999888888887789999999999999999999321 10 13678899887642 12
Q ss_pred --CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703 164 --RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 213 (278)
Q Consensus 164 --~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 213 (278)
.+||+|-+...+|... ........+|+++.+.|+|||.++.++++..
T Consensus 142 ~~~~FDvVScQFalHY~F---ese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAF---ESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp TTS-EEEEEEES-GGGGG---SSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred cCCCcceeehHHHHHHhc---CCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 5899999987776543 4456778899999999999999999988654
No 141
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.31 E-value=2.8e-11 Score=95.34 Aligned_cols=115 Identities=18% Similarity=0.210 Sum_probs=88.9
Q ss_pred CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC-cc-CCCccEEEeCCccc
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-KL-ERQFQLVMDKGTLD 176 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~-~~-~~~fD~v~~~~~~~ 176 (278)
.+.-|||||||+|..+..+.+.|. ..+|+|+|+.|++.|.+.--. -.++.+|+-+. ++ +++||.+|+...++
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~e-----gdlil~DMG~GlpfrpGtFDg~ISISAvQ 123 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELE-----GDLILCDMGEGLPFRPGTFDGVISISAVQ 123 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhh-----cCeeeeecCCCCCCCCCccceEEEeeeee
Confidence 567899999999999999999986 899999999999999873221 35778888653 33 69999999988887
Q ss_pred eecc----CCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHH
Q 023703 177 AIGL----HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH 219 (278)
Q Consensus 177 ~~~~----~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 219 (278)
++.- ..........|+..+..+|++|++.++.....+.+..-.
T Consensus 124 WLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~ 170 (270)
T KOG1541|consen 124 WLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDM 170 (270)
T ss_pred eecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHH
Confidence 6631 112233456778889999999999999987766655433
No 142
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.30 E-value=1.3e-11 Score=97.52 Aligned_cols=131 Identities=15% Similarity=0.157 Sum_probs=88.4
Q ss_pred ccccchhhhccccCCCCeEEEEecCCCHHHHHHhhCC--CC--------cEEEEeCChHHHHHHHHHhhhCCCcc-eEEE
Q 023703 85 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQG--FS--------DLTGVDYSEDAINLAQSLANRDGFSC-IKFL 153 (278)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~--------~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~ 153 (278)
+.....+-.+....++..|||..||+|.+.+..+..+ .. +++|+|+++.+++.|++|++..++.. +.+.
T Consensus 14 ~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~ 93 (179)
T PF01170_consen 14 PTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFI 93 (179)
T ss_dssp HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEE
T ss_pred HHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEE
Confidence 3334444445556778899999999999998877662 22 28899999999999999999988765 8999
Q ss_pred EccccCCc-cCCCccEEEeCCccceeccC-CCChhhHHHHHHHHHhcccCCcEEEEEecCCChHH
Q 023703 154 VDDVLDTK-LERQFQLVMDKGTLDAIGLH-PDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDE 216 (278)
Q Consensus 154 ~~d~~~~~-~~~~fD~v~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 216 (278)
+.|+.+++ .++.+|.|+++++|..-.-. .....-...+++++.++|++ ..+++.+.......
T Consensus 94 ~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~~~~~~ 157 (179)
T PF01170_consen 94 QWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSNRELEK 157 (179)
T ss_dssp E--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESCCCHHH
T ss_pred ecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCHHHHH
Confidence 99999988 56899999999998532211 11122335778999999999 55555555554443
No 143
>PLN02476 O-methyltransferase
Probab=99.30 E-value=2.5e-11 Score=101.44 Aligned_cols=117 Identities=11% Similarity=0.152 Sum_probs=94.4
Q ss_pred cccccchhhhccccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCC
Q 023703 84 EDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDT 160 (278)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~ 160 (278)
.+...+++..+....++++|||||||+|..++.++.. + ..+|+++|.+++..+.|+++++..|+. +++++.+|+.+.
T Consensus 103 ~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~ 182 (278)
T PLN02476 103 SPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAES 182 (278)
T ss_pred CHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH
Confidence 4455566777777778899999999999999999874 2 237999999999999999999999986 599999999764
Q ss_pred cc-------CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 161 KL-------ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 161 ~~-------~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
-. .++||+|+.... ......+++.+.+.|+|||.+++...
T Consensus 183 L~~l~~~~~~~~FD~VFIDa~----------K~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 183 LKSMIQNGEGSSYDFAFVDAD----------KRMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred HHHHHhcccCCCCCEEEECCC----------HHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 21 357999986543 23667788999999999999998643
No 144
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.28 E-value=1.2e-11 Score=99.36 Aligned_cols=116 Identities=19% Similarity=0.296 Sum_probs=91.4
Q ss_pred ccccchhhhccccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCc
Q 023703 85 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK 161 (278)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~ 161 (278)
+...+++..+.+..++++||||||++|..++.++.. + ..+|+.+|+++...+.|+++++..|+. +++++.+|+.+.-
T Consensus 31 ~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l 110 (205)
T PF01596_consen 31 PETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVL 110 (205)
T ss_dssp HHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHH
T ss_pred HHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhH
Confidence 334445666666667789999999999999999976 2 348999999999999999999999885 5999999998642
Q ss_pred c-------CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 162 L-------ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 162 ~-------~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
. .++||+|+.... ......+++.+.+.|+|||.+++...
T Consensus 111 ~~l~~~~~~~~fD~VFiDa~----------K~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 111 PELANDGEEGQFDFVFIDAD----------KRNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp HHHHHTTTTTSEEEEEEEST----------GGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred HHHHhccCCCceeEEEEccc----------ccchhhHHHHHhhhccCCeEEEEccc
Confidence 1 257999997543 23667788899999999999999753
No 145
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.27 E-value=1.1e-10 Score=91.11 Aligned_cols=129 Identities=18% Similarity=0.197 Sum_probs=98.8
Q ss_pred cccccccccccchhhhccc-cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEc
Q 023703 78 HMLNHVEDLKSEPVEENDK-YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVD 155 (278)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~ 155 (278)
...|+.+.....+...+.+ ...+.++||+.+|||.+++..+.+|+..++.+|.+..++...++|.+..++. +..++..
T Consensus 21 ~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~ 100 (187)
T COG0742 21 GTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRN 100 (187)
T ss_pred CcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEee
Confidence 4555555566666667776 4789999999999999999999999999999999999999999999988853 5888899
Q ss_pred cccCC--ccC--CCccEEEeCCccceeccCCCChhhHHHHHHH--HHhcccCCcEEEEEecCC
Q 023703 156 DVLDT--KLE--RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDS--VSKLVAPGGLLVITSCNS 212 (278)
Q Consensus 156 d~~~~--~~~--~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~LkpgG~l~~~~~~~ 212 (278)
|.... ... ++||+|+.+++|..= ..+....+.. -..+|+|+|.+++.....
T Consensus 101 da~~~L~~~~~~~~FDlVflDPPy~~~------l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 101 DALRALKQLGTREPFDLVFLDPPYAKG------LLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred cHHHHHHhcCCCCcccEEEeCCCCccc------hhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 98843 123 349999999999621 1121222222 457899999999987654
No 146
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.26 E-value=4.7e-11 Score=96.05 Aligned_cols=116 Identities=22% Similarity=0.302 Sum_probs=93.1
Q ss_pred ccccchhhhccccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEE-ccccCC
Q 023703 85 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLV-DDVLDT 160 (278)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~-~d~~~~ 160 (278)
+....++..+....++++|||||++.|..+++++.. + ..+++.+|++++..+.|+++++..|+.+ +.++. +|..+.
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~ 124 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV 124 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence 344445666666678899999999999999999987 3 3589999999999999999999999876 78888 577664
Q ss_pred c---cCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 161 K---LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 161 ~---~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
- ..++||+|+.... ..+...+++.+.++|+|||.+++-..
T Consensus 125 l~~~~~~~fDliFIDad----------K~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 125 LSRLLDGSFDLVFIDAD----------KADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred HHhccCCCccEEEEeCC----------hhhCHHHHHHHHHHhCCCcEEEEeec
Confidence 3 2588999986432 22566788999999999999999753
No 147
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.24 E-value=1.7e-10 Score=103.73 Aligned_cols=142 Identities=17% Similarity=0.186 Sum_probs=106.1
Q ss_pred ccccchhhhcc--ccCCCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC
Q 023703 85 DLKSEPVEEND--KYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 160 (278)
Q Consensus 85 ~~~~~~~~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~ 160 (278)
+...++...+. ...++.+|||+|||.|.-+..++.. +...|++.|+++.-++.++++++..|+.++.+.+.|....
T Consensus 97 d~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~ 176 (470)
T PRK11933 97 EASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVF 176 (470)
T ss_pred CHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhh
Confidence 33344433333 5578899999999999999998886 2237999999999999999999999998899999998765
Q ss_pred c--cCCCccEEEeCCccceeccCCCCh---------------hhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhh
Q 023703 161 K--LERQFQLVMDKGTLDAIGLHPDGP---------------LKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN 223 (278)
Q Consensus 161 ~--~~~~fD~v~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 223 (278)
. ..+.||.|+.+.+-....+-...+ .....+|..+.++|||||+++.++|+-..+|.-..+..
T Consensus 177 ~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~ 256 (470)
T PRK11933 177 GAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLW 256 (470)
T ss_pred hhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHH
Confidence 3 356799999776544332111111 12257889999999999999999999888777666654
Q ss_pred hhh
Q 023703 224 LSQ 226 (278)
Q Consensus 224 ~~~ 226 (278)
+-.
T Consensus 257 ~L~ 259 (470)
T PRK11933 257 LKE 259 (470)
T ss_pred HHH
Confidence 433
No 148
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.24 E-value=1.4e-10 Score=101.74 Aligned_cols=75 Identities=15% Similarity=0.225 Sum_probs=63.8
Q ss_pred CeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------------C
Q 023703 101 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------------E 163 (278)
Q Consensus 101 ~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------------~ 163 (278)
.+|||++||+|.+++.+++. +.+|+|+|+++.+++.|++|+..+++.+++++.+|+.+... .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 57999999999999988886 46899999999999999999999998889999999976321 1
Q ss_pred CCccEEEeCCccc
Q 023703 164 RQFQLVMDKGTLD 176 (278)
Q Consensus 164 ~~fD~v~~~~~~~ 176 (278)
.+||+|+.+++..
T Consensus 287 ~~~D~v~lDPPR~ 299 (362)
T PRK05031 287 YNFSTIFVDPPRA 299 (362)
T ss_pred CCCCEEEECCCCC
Confidence 1589999887753
No 149
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.23 E-value=9.5e-11 Score=105.57 Aligned_cols=102 Identities=15% Similarity=0.224 Sum_probs=78.7
Q ss_pred cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc----c-CCCccEEEe
Q 023703 97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----L-ERQFQLVMD 171 (278)
Q Consensus 97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~----~-~~~fD~v~~ 171 (278)
..++.+|||+|||+|.++..++... .+|+|+|+++.+++.|++|+..+++.+++++.+|+.+.. . ..+||+|+.
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~ 368 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLL 368 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEE
Confidence 3466799999999999999999874 589999999999999999999999888999999997531 1 346899998
Q ss_pred CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
+++-..+ ...+++.+.+ ++|+++++++.
T Consensus 369 dPPr~G~---------~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 369 DPPRKGC---------AAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred CcCCCCC---------CHHHHHHHHh-cCCCEEEEEcC
Confidence 7664321 1233344443 78988666653
No 150
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.23 E-value=2.2e-11 Score=94.72 Aligned_cols=94 Identities=17% Similarity=0.358 Sum_probs=73.8
Q ss_pred EEEeCChHHHHHHHHHhhhCC---CcceEEEEccccCCcc-CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccC
Q 023703 126 TGVDYSEDAINLAQSLANRDG---FSCIKFLVDDVLDTKL-ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAP 201 (278)
Q Consensus 126 ~~~D~s~~~i~~a~~~~~~~~---~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp 201 (278)
+|+|+|+.|++.|+++....+ ..+++++++|+.+.+. +++||+|++..+++++. +...++++++++|||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~-------d~~~~l~ei~rvLkp 73 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV-------DRLRAMKEMYRVLKP 73 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC-------CHHHHHHHHHHHcCc
Confidence 589999999999987765322 2469999999998875 56899999988777664 677888999999999
Q ss_pred CcEEEEEecCCChHHHHHHHhhhhh
Q 023703 202 GGLLVITSCNSTKDELVHEVSNLSQ 226 (278)
Q Consensus 202 gG~l~~~~~~~~~~~~~~~~~~~~~ 226 (278)
||.+++.+...+.......+..++.
T Consensus 74 GG~l~i~d~~~~~~~~~~~~~~~~~ 98 (160)
T PLN02232 74 GSRVSILDFNKSNQSVTTFMQGWMI 98 (160)
T ss_pred CeEEEEEECCCCChHHHHHHHHHHc
Confidence 9999999877665555554444443
No 151
>PLN02366 spermidine synthase
Probab=99.23 E-value=1.1e-10 Score=99.62 Aligned_cols=109 Identities=17% Similarity=0.369 Sum_probs=83.1
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhC--CC--cceEEEEccccCCc---cCCCccEE
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRD--GF--SCIKFLVDDVLDTK---LERQFQLV 169 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~--~~--~~~~~~~~d~~~~~---~~~~fD~v 169 (278)
.++++||+||||.|..+..+++++ ..+|+.+|+++.+++.|++.+... ++ ++++++.+|..... .+++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 456899999999999999999884 458999999999999999987642 12 46999999986542 24689999
Q ss_pred EeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 170 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
++...-. . .+........+++.+++.|+|||+++...
T Consensus 170 i~D~~dp-~--~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSSDP-V--GPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCCCC-C--CchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 9864321 1 12222234678899999999999998754
No 152
>PRK01581 speE spermidine synthase; Validated
Probab=99.22 E-value=2.6e-10 Score=98.10 Aligned_cols=113 Identities=19% Similarity=0.204 Sum_probs=82.9
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHh--h---h--CCCcceEEEEccccCCc--cCCCcc
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLA--N---R--DGFSCIKFLVDDVLDTK--LERQFQ 167 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~--~---~--~~~~~~~~~~~d~~~~~--~~~~fD 167 (278)
..+.+||+||||+|..+..+++++ ..+|+++|+++.+++.|++.. . . ..-++++++.+|+.+.. ..++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 456799999999999999888873 458999999999999999621 1 1 12257999999998753 356899
Q ss_pred EEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703 168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 212 (278)
Q Consensus 168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 212 (278)
+|+++.+ +... ..........+++.+++.|+|||++++...++
T Consensus 229 VIIvDl~-DP~~-~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp 271 (374)
T PRK01581 229 VIIIDFP-DPAT-ELLSTLYTSELFARIATFLTEDGAFVCQSNSP 271 (374)
T ss_pred EEEEcCC-Cccc-cchhhhhHHHHHHHHHHhcCCCcEEEEecCCh
Confidence 9998743 1110 11122344678899999999999988875433
No 153
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.21 E-value=1.2e-10 Score=98.26 Aligned_cols=110 Identities=24% Similarity=0.324 Sum_probs=82.3
Q ss_pred CCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCC----CcceEEEEccccCCc--cCCCccEEEe
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDG----FSCIKFLVDDVLDTK--LERQFQLVMD 171 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~----~~~~~~~~~d~~~~~--~~~~fD~v~~ 171 (278)
.+.+||+||||+|.++..+++++ ..+++++|+++.+++.+++.+...+ .++++++.+|..... ..++||+|+.
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 34599999999999999988874 5689999999999999999875432 235888888876532 2578999998
Q ss_pred CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703 172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 211 (278)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 211 (278)
+.+.. . .+........+++.+++.|+|||++++...+
T Consensus 152 D~~~~-~--~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~ 188 (270)
T TIGR00417 152 DSTDP-V--GPAETLFTKEFYELLKKALNEDGIFVAQSES 188 (270)
T ss_pred eCCCC-C--CcccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 65421 1 1111112467789999999999999987543
No 154
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.21 E-value=1.7e-10 Score=100.91 Aligned_cols=108 Identities=13% Similarity=0.121 Sum_probs=77.9
Q ss_pred CeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccC-----------------
Q 023703 101 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE----------------- 163 (278)
Q Consensus 101 ~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~----------------- 163 (278)
.+|||+|||+|.+++.+++. +.+|+|+|+++.+++.|++|++.+++.+++++.+|+.+....
T Consensus 199 ~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 47999999999999988887 458999999999999999999999988899999999764211
Q ss_pred CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHH
Q 023703 164 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV 221 (278)
Q Consensus 164 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 221 (278)
..||+|+.+++-.. ....+++.+. +|+++++++....+....+..+
T Consensus 278 ~~~d~v~lDPPR~G---------~~~~~l~~l~---~~~~ivYvsC~p~tlaRDl~~L 323 (353)
T TIGR02143 278 YNCSTIFVDPPRAG---------LDPDTCKLVQ---AYERILYISCNPETLKANLEQL 323 (353)
T ss_pred CCCCEEEECCCCCC---------CcHHHHHHHH---cCCcEEEEEcCHHHHHHHHHHH
Confidence 13688887666321 2222333333 4777777665554444444433
No 155
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.21 E-value=1.5e-10 Score=92.54 Aligned_cols=116 Identities=23% Similarity=0.309 Sum_probs=84.9
Q ss_pred CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCC-----c-----------------------
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF-----S----------------------- 148 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~-----~----------------------- 148 (278)
..+..+|||||.+|.++..+++. |+..|+|+||++..|+.|+++.....- .
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 45678999999999999999998 777999999999999999998753210 0
Q ss_pred -------ce-------EEEEccccCCccCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703 149 -------CI-------KFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK 214 (278)
Q Consensus 149 -------~~-------~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 214 (278)
++ .+...|+. ......||+|+|-..--++.+..-+. ....+++++.++|.|||+|++.--.+..
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl-~~~~~~fDiIlcLSiTkWIHLNwgD~-GL~~ff~kis~ll~pgGiLvvEPQpWks 214 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFL-DMIQPEFDIILCLSITKWIHLNWGDD-GLRRFFRKISSLLHPGGILVVEPQPWKS 214 (288)
T ss_pred ccccCCcchhcccccEEEecchhh-hhccccccEEEEEEeeeeEecccccH-HHHHHHHHHHHhhCcCcEEEEcCCchHH
Confidence 01 11111111 01235799999987776776655433 5677889999999999999998766554
Q ss_pred H
Q 023703 215 D 215 (278)
Q Consensus 215 ~ 215 (278)
-
T Consensus 215 Y 215 (288)
T KOG2899|consen 215 Y 215 (288)
T ss_pred H
Confidence 3
No 156
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.20 E-value=2.5e-11 Score=97.17 Aligned_cols=112 Identities=20% Similarity=0.279 Sum_probs=81.2
Q ss_pred eEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc----cCCCccEEEeCCccc
Q 023703 102 SVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLVMDKGTLD 176 (278)
Q Consensus 102 ~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~----~~~~fD~v~~~~~~~ 176 (278)
.+||||||.|.+...+|.. +...++|+|++...+..+.+++...+++|+.++++|+.... .++++|.|+.+-+=-
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP 99 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence 8999999999999999987 45699999999999999999999999999999999998732 247777777532211
Q ss_pred eec-cCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703 177 AIG-LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 213 (278)
Q Consensus 177 ~~~-~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 213 (278)
+.- -|...-.-...+++.+.++|+|||.+.+.+-...
T Consensus 100 WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~ 137 (195)
T PF02390_consen 100 WPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEE 137 (195)
T ss_dssp --SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HH
T ss_pred CcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHH
Confidence 110 0111111225788999999999999999875543
No 157
>PRK03612 spermidine synthase; Provisional
Probab=99.18 E-value=1.1e-10 Score=107.17 Aligned_cols=111 Identities=24% Similarity=0.315 Sum_probs=82.8
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCCC-CcEEEEeCChHHHHHHHHHh--hh-----CCCcceEEEEccccCCc--cCCCcc
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLA--NR-----DGFSCIKFLVDDVLDTK--LERQFQ 167 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~~D~s~~~i~~a~~~~--~~-----~~~~~~~~~~~d~~~~~--~~~~fD 167 (278)
.++++|||+|||+|..+..+++++. .+|+++|+++++++.++++. .. ..-++++++.+|..+.. .+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4567999999999999999998854 69999999999999999842 21 11146899999998743 357899
Q ss_pred EEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
+|+++.+..... .........+++.+++.|||||.+++...
T Consensus 376 vIi~D~~~~~~~--~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 376 VIIVDLPDPSNP--ALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred EEEEeCCCCCCc--chhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 999975432110 01112335678999999999999998754
No 158
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.16 E-value=3.5e-10 Score=89.04 Aligned_cols=107 Identities=19% Similarity=0.230 Sum_probs=74.5
Q ss_pred CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCC---CcceEEEEccccCCc-----cCCCccE
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG---FSCIKFLVDDVLDTK-----LERQFQL 168 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~---~~~~~~~~~d~~~~~-----~~~~fD~ 168 (278)
.++.+|||+|||+|..++.++.. +..+|+.+|.++ .++.++.|++.++ ..++.+...|..+.. ...+||+
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 56789999999999999999998 667999999999 9999999998876 235888888876532 1358999
Q ss_pred EEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703 169 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 212 (278)
Q Consensus 169 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 212 (278)
|+...++.. ......+++.+.++|+|+|.+++.....
T Consensus 123 IlasDv~Y~-------~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYD-------EELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S--------GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEecccch-------HHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 998877642 2366777899999999999977776443
No 159
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.16 E-value=1.5e-10 Score=96.13 Aligned_cols=122 Identities=22% Similarity=0.293 Sum_probs=94.2
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC------cceEEEEccccCCc------cCC-
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF------SCIKFLVDDVLDTK------LER- 164 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~------~~~~~~~~d~~~~~------~~~- 164 (278)
.++..++++|||-|..++..-..|...++|+||++..|+.|++++....- -.+.|+.+|.+... ++.
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 46778999999999999998888888999999999999999999864321 13689999997642 233
Q ss_pred CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhhh
Q 023703 165 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNL 224 (278)
Q Consensus 165 ~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 224 (278)
+||+|-|...++.- ....+....++.++.++|+|||.++-+.++. +.++..++..
T Consensus 196 ~fDivScQF~~HYa---Fetee~ar~~l~Nva~~LkpGG~FIgTiPds--d~Ii~rlr~~ 250 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYA---FETEESARIALRNVAKCLKPGGVFIGTIPDS--DVIIKRLRAG 250 (389)
T ss_pred CcceeeeeeeEeee---eccHHHHHHHHHHHHhhcCCCcEEEEecCcH--HHHHHHHHhc
Confidence 49999887666432 3456677888899999999999999887754 4555555543
No 160
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.16 E-value=2.3e-10 Score=94.25 Aligned_cols=110 Identities=22% Similarity=0.287 Sum_probs=80.6
Q ss_pred hccccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCcc----CCC
Q 023703 93 ENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL----ERQ 165 (278)
Q Consensus 93 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~----~~~ 165 (278)
....+.||.+|||.|+|+|.++..|++. + ..+|+..|+.+...+.|+++++..++. ++++.+.|+.+..+ +..
T Consensus 34 ~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~ 113 (247)
T PF08704_consen 34 MRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESD 113 (247)
T ss_dssp HHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTS
T ss_pred HHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCc
Confidence 3356689999999999999999999976 2 348999999999999999999999986 59999999975332 356
Q ss_pred ccEEEeCCccceeccCCCChhhHHHHHHHHHhcc-cCCcEEEEEecCCCh
Q 023703 166 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLV-APGGLLVITSCNSTK 214 (278)
Q Consensus 166 fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~~~~~~ 214 (278)
+|.|+.+. +.+. .++..+.++| +|||++++-+++-++
T Consensus 114 ~DavfLDl---------p~Pw---~~i~~~~~~L~~~gG~i~~fsP~ieQ 151 (247)
T PF08704_consen 114 FDAVFLDL---------PDPW---EAIPHAKRALKKPGGRICCFSPCIEQ 151 (247)
T ss_dssp EEEEEEES---------SSGG---GGHHHHHHHE-EEEEEEEEEESSHHH
T ss_pred ccEEEEeC---------CCHH---HHHHHHHHHHhcCCceEEEECCCHHH
Confidence 78777532 2232 2347899999 899998887765443
No 161
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.16 E-value=1.2e-10 Score=98.46 Aligned_cols=107 Identities=21% Similarity=0.267 Sum_probs=81.1
Q ss_pred cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCccC-CCccEEEeCCc
Q 023703 97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLE-RQFQLVMDKGT 174 (278)
Q Consensus 97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~-~~fD~v~~~~~ 174 (278)
+.+++.|||+|||+|.+++..|+.|+++|+++|.|.-+ +.|++.+..+++.+ ++++.+.+.+...+ ++.|+|++--.
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWM 136 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhh
Confidence 35788999999999999999999998899999988776 99999999999887 89999999987655 89999997311
Q ss_pred cceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703 175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 208 (278)
Q Consensus 175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 208 (278)
=.++. ... ....+|-.--+.|+|||.++=.
T Consensus 137 Gy~Ll--~Es--MldsVl~ARdkwL~~~G~i~P~ 166 (346)
T KOG1499|consen 137 GYFLL--YES--MLDSVLYARDKWLKEGGLIYPD 166 (346)
T ss_pred hHHHH--Hhh--hhhhhhhhhhhccCCCceEccc
Confidence 00110 011 1122233345789999987653
No 162
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.15 E-value=2.2e-10 Score=94.61 Aligned_cols=115 Identities=16% Similarity=0.205 Sum_probs=91.2
Q ss_pred ccccchhhhccccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCc
Q 023703 85 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK 161 (278)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~ 161 (278)
+....++..+....+.++|||||+++|..++.++.. + ..+|+.+|.++...+.|+++++..|+. +++++.+|+.+.-
T Consensus 65 ~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L 144 (247)
T PLN02589 65 ADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL 144 (247)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHH
Confidence 344456666666667789999999999999999875 2 248999999999999999999999875 4999999987742
Q ss_pred c--------CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 162 L--------ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 162 ~--------~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
. .++||+|+...- ......+++.+.+.|+|||.+++..
T Consensus 145 ~~l~~~~~~~~~fD~iFiDad----------K~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 145 DQMIEDGKYHGTFDFIFVDAD----------KDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred HHHHhccccCCcccEEEecCC----------HHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 1 258999986533 2355677788999999999998864
No 163
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.14 E-value=5.9e-11 Score=94.91 Aligned_cols=101 Identities=17% Similarity=0.298 Sum_probs=73.6
Q ss_pred eEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCc-cCCCccEEEeCCccceec
Q 023703 102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK-LERQFQLVMDKGTLDAIG 179 (278)
Q Consensus 102 ~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~-~~~~fD~v~~~~~~~~~~ 179 (278)
.++|+|||+|..++.++.+ +.+|+|+|+|+.|++.|++.....-. ....+...++.++. .+++.|+|++...++++
T Consensus 36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF- 113 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF- 113 (261)
T ss_pred eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh-
Confidence 7999999999888888888 67999999999999999876432110 01222333333322 26889999998888776
Q ss_pred cCCCChhhHHHHHHHHHhcccCCc-EEEEEecC
Q 023703 180 LHPDGPLKRIMYWDSVSKLVAPGG-LLVITSCN 211 (278)
Q Consensus 180 ~~~~~~~~~~~~l~~~~~~LkpgG-~l~~~~~~ 211 (278)
+...+.+++.++||++| ++.+-..+
T Consensus 114 -------dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 114 -------DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred -------chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 67778899999999877 55554444
No 164
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.14 E-value=6.1e-12 Score=99.57 Aligned_cols=101 Identities=26% Similarity=0.360 Sum_probs=79.0
Q ss_pred CCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC---ccCCCccEEEeCCccc
Q 023703 100 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT---KLERQFQLVMDKGTLD 176 (278)
Q Consensus 100 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~---~~~~~fD~v~~~~~~~ 176 (278)
-.++||+|||||..+..+... ..+++|+|+|.+|+++|.++--. -.+.+.|+..+ ..+++||+|.+..++.
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg~Y-----D~L~~Aea~~Fl~~~~~er~DLi~AaDVl~ 199 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKGLY-----DTLYVAEAVLFLEDLTQERFDLIVAADVLP 199 (287)
T ss_pred cceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhccch-----HHHHHHHHHHHhhhccCCcccchhhhhHHH
Confidence 369999999999999999998 45899999999999999875211 12334444432 2357899999999887
Q ss_pred eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703 177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 213 (278)
Q Consensus 177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 213 (278)
.+. ....++.-+...|+|||.|.++.-...
T Consensus 200 YlG-------~Le~~~~~aa~~L~~gGlfaFSvE~l~ 229 (287)
T COG4976 200 YLG-------ALEGLFAGAAGLLAPGGLFAFSVETLP 229 (287)
T ss_pred hhc-------chhhHHHHHHHhcCCCceEEEEecccC
Confidence 776 667777899999999999999864443
No 165
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.13 E-value=1.9e-10 Score=93.65 Aligned_cols=114 Identities=18% Similarity=0.241 Sum_probs=86.5
Q ss_pred CeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc----cCCCccEEEeCCcc
Q 023703 101 WSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLVMDKGTL 175 (278)
Q Consensus 101 ~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~----~~~~fD~v~~~~~~ 175 (278)
..+||||||.|.+...+|.. +...++|+|+....+..|.+.+...+++|+.+++.|+.... .+++.|-|+.+-+=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 48999999999999999998 44589999999999999999999999889999999998752 23466666653221
Q ss_pred ceec-cCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703 176 DAIG-LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK 214 (278)
Q Consensus 176 ~~~~-~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 214 (278)
-+.- -|...-.-...+++.+.+.|+|||.+.+.+-+..-
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y 169 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEY 169 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHH
Confidence 1110 01122223357889999999999999998765543
No 166
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.13 E-value=1.7e-10 Score=101.53 Aligned_cols=98 Identities=27% Similarity=0.286 Sum_probs=80.6
Q ss_pred CCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCccce
Q 023703 100 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLDA 177 (278)
Q Consensus 100 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~~~ 177 (278)
+.+|||++||+|.+++.++.. +..+|+++|+++.+++.+++|++.+++.++.+.++|+..... .++||+|+.++. .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~-G- 135 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF-G- 135 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC-C-
Confidence 458999999999999999876 545899999999999999999999998778899999876433 467999988652 1
Q ss_pred eccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703 178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 208 (278)
Q Consensus 178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 208 (278)
....++..+.+.+++||+++++
T Consensus 136 ---------s~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 136 ---------SPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ---------CcHHHHHHHHHHhcCCCEEEEE
Confidence 2234567777788999999998
No 167
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=1.3e-09 Score=83.53 Aligned_cols=122 Identities=16% Similarity=0.203 Sum_probs=94.1
Q ss_pred CCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccce
Q 023703 100 SWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA 177 (278)
Q Consensus 100 ~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~ 177 (278)
..-++|||||+|..+..|++. +...+.++|++|.+++..++.+..++. ++..++.|+.+.-..++.|+++.|++|--
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-~~~~V~tdl~~~l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-HIDVVRTDLLSGLRNESVDVLVFNPPYVP 122 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-ccceeehhHHhhhccCCccEEEECCCcCc
Confidence 568999999999999999887 345789999999999999999988875 68899999988655699999999998732
Q ss_pred ecc--------------CCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh-HHHHHHHh
Q 023703 178 IGL--------------HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK-DELVHEVS 222 (278)
Q Consensus 178 ~~~--------------~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~~~~~ 222 (278)
-.. ...+..-...++.++..+|.|.|.+++.....+. .+..+.++
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~ 182 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILE 182 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHh
Confidence 211 2233334567778889999999999998754433 34444333
No 168
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.11 E-value=4.5e-10 Score=89.48 Aligned_cols=106 Identities=18% Similarity=0.254 Sum_probs=79.7
Q ss_pred CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccC-CCccEEEeCCccce
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLDA 177 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~~ 177 (278)
...+.||.|+|-|+.+..+...-+.+|..+|..+..++.|++.+....-.-.++.+..+.++.++ .+||+|++.=++.|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 45699999999999999887766789999999999999999876652212368889999988774 79999999777766
Q ss_pred eccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
+. ..+...+|++++..|+|+|.+++-+
T Consensus 135 LT-----D~dlv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 135 LT-----DEDLVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp S------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC-----HHHHHHHHHHHHHhCcCCcEEEEEe
Confidence 65 6788999999999999999999954
No 169
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.11 E-value=2.1e-10 Score=91.60 Aligned_cols=100 Identities=19% Similarity=0.226 Sum_probs=73.6
Q ss_pred ccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCccCCCccEEEeCC
Q 023703 96 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKG 173 (278)
Q Consensus 96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~fD~v~~~~ 173 (278)
...++.+|+|+.||.|.+++.++.. ..+.|+++|++|.+++.++++++.+++.+ +..+++|..+....+.||-|+++.
T Consensus 98 ~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~l 177 (200)
T PF02475_consen 98 LVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNL 177 (200)
T ss_dssp C--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--
T ss_pred cCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECC
Confidence 3567889999999999999999983 24589999999999999999999999876 889999999876678899888865
Q ss_pred ccceeccCCCChhhHHHHHHHHHhcccCCcEEE
Q 023703 174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLV 206 (278)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 206 (278)
+-. ...++..+..++++||.+.
T Consensus 178 p~~-----------~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 178 PES-----------SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp TSS-----------GGGGHHHHHHHEEEEEEEE
T ss_pred hHH-----------HHHHHHHHHHHhcCCcEEE
Confidence 432 2345688999999999875
No 170
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.10 E-value=8.7e-10 Score=94.36 Aligned_cols=108 Identities=15% Similarity=0.172 Sum_probs=92.0
Q ss_pred cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCccC-CCccEEEeCCc
Q 023703 97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLE-RQFQLVMDKGT 174 (278)
Q Consensus 97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~-~~fD~v~~~~~ 174 (278)
..+|.+|||+.||-|.+++.+|..|..+|+++|++|.+++.+++|++.|++.+ +..+++|..+.... +.+|-|+++.+
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 35689999999999999999999987669999999999999999999999977 89999999988765 78888887644
Q ss_pred cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChH
Q 023703 175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD 215 (278)
Q Consensus 175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 215 (278)
- ....++..+.+.+++||++.+....+...
T Consensus 266 ~-----------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 266 K-----------SAHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred C-----------cchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 3 44556688999999999998877655544
No 171
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.07 E-value=2.6e-09 Score=89.66 Aligned_cols=76 Identities=20% Similarity=0.309 Sum_probs=65.4
Q ss_pred cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccc
Q 023703 97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD 176 (278)
Q Consensus 97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~ 176 (278)
..++.+|||||||+|.++..+++.+ .+|+++|+++.+++.+++++.. .++++++++|+.+.+.+ .||.|++|.++.
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~~-~~d~Vv~NlPy~ 102 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDLP-EFNKVVSNLPYQ 102 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCch-hceEEEEcCCcc
Confidence 4567899999999999999999985 5899999999999999998754 35799999999886543 489999998875
No 172
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.06 E-value=2.8e-09 Score=90.58 Aligned_cols=79 Identities=16% Similarity=0.256 Sum_probs=67.5
Q ss_pred cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCC-CcceEEEEccccCCccCCCccEEEeCCcc
Q 023703 97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVDDVLDTKLERQFQLVMDKGTL 175 (278)
Q Consensus 97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~-~~~~~~~~~d~~~~~~~~~fD~v~~~~~~ 175 (278)
..++.+|||||||+|.++..++..+ .+|+++|+++.+++.+++++...+ .++++++++|+.+... ..||.|++|.+|
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~-~~~d~VvaNlPY 111 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF-PYFDVCVANVPY 111 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-cccCEEEecCCc
Confidence 4567899999999999999999985 489999999999999999987665 3579999999987543 468999999888
Q ss_pred ce
Q 023703 176 DA 177 (278)
Q Consensus 176 ~~ 177 (278)
..
T Consensus 112 ~I 113 (294)
T PTZ00338 112 QI 113 (294)
T ss_pred cc
Confidence 53
No 173
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.06 E-value=1.2e-09 Score=89.05 Aligned_cols=93 Identities=20% Similarity=0.374 Sum_probs=75.0
Q ss_pred CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-cCCCccEEEeCCccce
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-LERQFQLVMDKGTLDA 177 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~~~~ 177 (278)
...++||||+|.|..+..++.. +.+|+++|.|+.|....++ .| .+++ |..++. .+.+||+|.|.+++|.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~----kg---~~vl--~~~~w~~~~~~fDvIscLNvLDR 163 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSK----KG---FTVL--DIDDWQQTDFKFDVISCLNVLDR 163 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHh----CC---CeEE--ehhhhhccCCceEEEeehhhhhc
Confidence 4568999999999999999997 6799999999999776665 33 3332 222232 2468999999999987
Q ss_pred eccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703 178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 208 (278)
Q Consensus 178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 208 (278)
.. .+..+|+.+++.|+|+|++++.
T Consensus 164 c~-------~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 164 CD-------RPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred cC-------CHHHHHHHHHHHhCCCCEEEEE
Confidence 75 7788899999999999999885
No 174
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=99.06 E-value=1.3e-09 Score=97.72 Aligned_cols=103 Identities=19% Similarity=0.360 Sum_probs=75.6
Q ss_pred CCeEEEEecCCCHHHHHHhhCC-----CCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCccCCCccEEEeCC
Q 023703 100 SWSVLDIGTGNGLLLQELSKQG-----FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKG 173 (278)
Q Consensus 100 ~~~vLDiGcG~G~~~~~l~~~~-----~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~ 173 (278)
+..|+|+|||+|.++...++.+ ..+|+++|-++.++..++++.+.++.. .|+++++|+.+...+.+.|+|++-
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSE- 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSE- 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEe-
Confidence 5789999999999987776653 459999999999999888877777774 599999999999988999999972
Q ss_pred ccceeccCCCChhhHHHHHHHHHhcccCCcEEEE
Q 023703 174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI 207 (278)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 207 (278)
.+..+..+. .....|..+.+.|||||+++=
T Consensus 266 lLGsfg~nE----l~pE~Lda~~rfLkp~Gi~IP 295 (448)
T PF05185_consen 266 LLGSFGDNE----LSPECLDAADRFLKPDGIMIP 295 (448)
T ss_dssp --BTTBTTT----SHHHHHHHGGGGEEEEEEEES
T ss_pred ccCCccccc----cCHHHHHHHHhhcCCCCEEeC
Confidence 222222111 223456788899999998764
No 175
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.05 E-value=1.3e-09 Score=90.56 Aligned_cols=99 Identities=20% Similarity=0.277 Sum_probs=79.9
Q ss_pred CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccc
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD 176 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~ 176 (278)
.+..+|+|||+|+|.++..+++. +..+++..|. |..++.+++ .++++++.+|+++ +.+. +|+++...+++
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~-~~P~-~D~~~l~~vLh 169 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFD-PLPV-ADVYLLRHVLH 169 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTT-CCSS-ESEEEEESSGG
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHHh-hhcc-ccceeeehhhh
Confidence 45568999999999999999887 4458999998 888888887 2589999999994 4445 99999988886
Q ss_pred eeccCCCChhhHHHHHHHHHhcccCC--cEEEEEec
Q 023703 177 AIGLHPDGPLKRIMYWDSVSKLVAPG--GLLVITSC 210 (278)
Q Consensus 177 ~~~~~~~~~~~~~~~l~~~~~~Lkpg--G~l~~~~~ 210 (278)
... ..+...+|+++++.|+|| |++++.+.
T Consensus 170 ~~~-----d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 170 DWS-----DEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp GS------HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hcc-----hHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 654 668889999999999999 99999763
No 176
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.04 E-value=1e-09 Score=93.91 Aligned_cols=105 Identities=17% Similarity=0.207 Sum_probs=73.1
Q ss_pred ccccCcccccccccccchh---hhccc-----c--CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHH
Q 023703 73 SISQGHMLNHVEDLKSEPV---EENDK-----Y--LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL 141 (278)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~---~~~~~-----~--~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~ 141 (278)
.+..+.+.|....+...+. .++.. . .++.+|||||||+|.+...++.+ ...+++|+|+++.+++.|+++
T Consensus 78 dip~~~LcPpiP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~N 157 (321)
T PRK11727 78 DIPAGYLCPPIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAI 157 (321)
T ss_pred cCCCCCcCCCCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHH
Confidence 3677777776643333222 22211 1 24579999999999888877765 224899999999999999999
Q ss_pred hhhC-CCc-ceEEEE-ccccCCc-----cCCCccEEEeCCccce
Q 023703 142 ANRD-GFS-CIKFLV-DDVLDTK-----LERQFQLVMDKGTLDA 177 (278)
Q Consensus 142 ~~~~-~~~-~~~~~~-~d~~~~~-----~~~~fD~v~~~~~~~~ 177 (278)
++.+ ++. ++.++. .|..... ..++||+|+||++|..
T Consensus 158 v~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~ 201 (321)
T PRK11727 158 ISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATLCNPPFHA 201 (321)
T ss_pred HHhccCCcCcEEEEEccchhhhhhcccccCCceEEEEeCCCCcC
Confidence 9998 675 477754 3332211 2468999999999853
No 177
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.04 E-value=1.9e-09 Score=91.17 Aligned_cols=76 Identities=20% Similarity=0.230 Sum_probs=64.3
Q ss_pred cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCC-ccEEEeCCcc
Q 023703 97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQ-FQLVMDKGTL 175 (278)
Q Consensus 97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~-fD~v~~~~~~ 175 (278)
..++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.+++++.. ++++++++|+.+.+.+.- ++.|++|.+|
T Consensus 40 ~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~~~~~~vv~NlPY 115 (272)
T PRK00274 40 PQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLSELQPLKVVANLPY 115 (272)
T ss_pred CCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHHHcCcceEEEeCCc
Confidence 35677999999999999999999964 899999999999999987643 479999999998765432 5889999887
Q ss_pred c
Q 023703 176 D 176 (278)
Q Consensus 176 ~ 176 (278)
.
T Consensus 116 ~ 116 (272)
T PRK00274 116 N 116 (272)
T ss_pred c
Confidence 4
No 178
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=6.6e-09 Score=90.81 Aligned_cols=148 Identities=20% Similarity=0.195 Sum_probs=113.2
Q ss_pred cccccchhhhccccCCCCeEEEEecCCCHHHHHHhhCCC---CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC
Q 023703 84 EDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGF---SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 160 (278)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~ 160 (278)
++...++...+....++.+|||++++.|.=+.++++... ..|+++|.++.-++..++|++..|+.++...+.|....
T Consensus 141 Qd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~ 220 (355)
T COG0144 141 QDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRL 220 (355)
T ss_pred cCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccc
Confidence 455556666677788999999999999998888888731 24799999999999999999999998888888887654
Q ss_pred c---cC-CCccEEEeCCccceecc---CCCC------------hhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHH
Q 023703 161 K---LE-RQFQLVMDKGTLDAIGL---HPDG------------PLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV 221 (278)
Q Consensus 161 ~---~~-~~fD~v~~~~~~~~~~~---~~~~------------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 221 (278)
. .. ++||.|+...+-..... +|+- ......+|..+.++|||||.|+.++|+...+|.-..+
T Consensus 221 ~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV 300 (355)
T COG0144 221 AELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVV 300 (355)
T ss_pred cccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHH
Confidence 3 22 36999998776543321 1211 1123578899999999999999999999888887777
Q ss_pred hhhhhccccc
Q 023703 222 SNLSQRRIGV 231 (278)
Q Consensus 222 ~~~~~~~~~~ 231 (278)
..+..++..+
T Consensus 301 ~~~L~~~~~~ 310 (355)
T COG0144 301 ERFLERHPDF 310 (355)
T ss_pred HHHHHhCCCc
Confidence 7666555433
No 179
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=2.8e-09 Score=94.87 Aligned_cols=114 Identities=18% Similarity=0.213 Sum_probs=86.5
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccC----CCccEEEeCC
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE----RQFQLVMDKG 173 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~----~~fD~v~~~~ 173 (278)
.++.++||+-||.|.+++.++... .+|+|+|+++.+++.|++|++.+++.|+.|..++..+.... ..+|.|+.++
T Consensus 292 ~~~~~vlDlYCGvG~f~l~lA~~~-~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDP 370 (432)
T COG2265 292 AGGERVLDLYCGVGTFGLPLAKRV-KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDP 370 (432)
T ss_pred cCCCEEEEeccCCChhhhhhcccC-CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECC
Confidence 466799999999999999999874 59999999999999999999999999999999999886532 4678888655
Q ss_pred ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHh
Q 023703 174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS 222 (278)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 222 (278)
+= ..--..+++.+.+ ++|..+++++....+.......+.
T Consensus 371 PR---------~G~~~~~lk~l~~-~~p~~IvYVSCNP~TlaRDl~~L~ 409 (432)
T COG2265 371 PR---------AGADREVLKQLAK-LKPKRIVYVSCNPATLARDLAILA 409 (432)
T ss_pred CC---------CCCCHHHHHHHHh-cCCCcEEEEeCCHHHHHHHHHHHH
Confidence 43 2222233344444 577777777766555555555444
No 180
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=4.2e-10 Score=82.91 Aligned_cols=79 Identities=22% Similarity=0.293 Sum_probs=69.2
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCccc
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD 176 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~~ 176 (278)
-.|++++|+|||.|-++...+..+...|+|+|++|.+++.+.+|+....+ ++++.++|+.+.-+ .+.||.++.|++|.
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv-qidlLqcdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV-QIDLLQCDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh-hhheeeeeccchhccCCeEeeEEecCCCC
Confidence 46889999999999999777777777999999999999999999988876 68999999998765 47899999999985
Q ss_pred e
Q 023703 177 A 177 (278)
Q Consensus 177 ~ 177 (278)
.
T Consensus 126 T 126 (185)
T KOG3420|consen 126 T 126 (185)
T ss_pred c
Confidence 3
No 181
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.00 E-value=6e-09 Score=86.12 Aligned_cols=120 Identities=20% Similarity=0.268 Sum_probs=95.1
Q ss_pred CCCCeEEEEecCCCHHHHHHhhC-C--CCcEEEEeCChHHHHHHHHHhhhCCCcce-EEEEccccCCc----cCCCccEE
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQ-G--FSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDDVLDTK----LERQFQLV 169 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~-~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~-~~~~~d~~~~~----~~~~fD~v 169 (278)
..+.+||||.||.|+..+..... + ..+|...|+|+..++..++..+..|+.++ +|.++|+++.. .....+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 45679999999999887776655 3 35899999999999999999999999885 99999999853 24557999
Q ss_pred EeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe-cCCChHHHHHHH
Q 023703 170 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS-CNSTKDELVHEV 221 (278)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~~~~~~ 221 (278)
+..+.++.+. +.......+..+.+++.|||.++.+. +.++..++...+
T Consensus 214 iVsGL~ElF~----Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~ 262 (311)
T PF12147_consen 214 IVSGLYELFP----DNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARV 262 (311)
T ss_pred EEecchhhCC----cHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHH
Confidence 9999998664 11234456789999999999999987 555556655544
No 182
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.00 E-value=5e-09 Score=79.23 Aligned_cols=128 Identities=22% Similarity=0.300 Sum_probs=98.4
Q ss_pred cccCcccccccccccchhhhccccCCCCeEEEEecCCCHHHHHHhhCCC--CcEEEEeCChHHHHHHHHHhhhCCCcceE
Q 023703 74 ISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIK 151 (278)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~~ 151 (278)
-.-|.+.|+..-+.+.|...+ ....+..|||+|.|||.++..+.++|. ..++++|+|+..+....+.+ +.++
T Consensus 24 rtVGaI~PsSs~lA~~M~s~I-~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~~~ 97 (194)
T COG3963 24 RTVGAILPSSSILARKMASVI-DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PGVN 97 (194)
T ss_pred ceeeeecCCcHHHHHHHHhcc-CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----CCcc
Confidence 334555555544444444443 345678999999999999999999963 48999999999999998876 4567
Q ss_pred EEEccccCCc------cCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703 152 FLVDDVLDTK------LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 212 (278)
Q Consensus 152 ~~~~d~~~~~------~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 212 (278)
++.+|+.+.. ....||.|+|.-++-.++ .....++++.+...|.+||.++..+..+
T Consensus 98 ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P-----~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 98 IINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFP-----MHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred ccccchhhHHHHHhhcCCCeeeeEEeccccccCc-----HHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 8999998764 246799999976665554 4467788999999999999999887764
No 183
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.99 E-value=2e-09 Score=94.31 Aligned_cols=97 Identities=16% Similarity=0.248 Sum_probs=82.6
Q ss_pred CeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc--CCCccEEEeCCccc
Q 023703 101 WSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDKGTLD 176 (278)
Q Consensus 101 ~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~v~~~~~~~ 176 (278)
.+|||+.||+|..++.++.+ |..+|+++|+++.+++.+++|++.+++.++.+.+.|+..... ..+||+|..++ +.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-fG 124 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-FG 124 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-CC
Confidence 58999999999999999987 667999999999999999999999988778999999987533 36799998765 42
Q ss_pred eeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703 177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 208 (278)
Q Consensus 177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 208 (278)
....++..+.+.+++||.++++
T Consensus 125 ----------s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 125 ----------TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred ----------CcHHHHHHHHHhcccCCEEEEE
Confidence 2235678899999999999997
No 184
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.99 E-value=2.9e-09 Score=89.05 Aligned_cols=106 Identities=17% Similarity=0.299 Sum_probs=82.9
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCccCCCccEEEeCCccc
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTLD 176 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~~~~ 176 (278)
..++.|||+|||+|.++...++.|+++|++++. .+|.+.|++..+.+.+. +|.++.+-+.+..++++.|++++-+. .
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPM-G 253 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPM-G 253 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccc-h
Confidence 367899999999999999999999999999995 56789999998888764 49999999999989999999997542 2
Q ss_pred eeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
.+..+ +....-.-.+++.|||.|.++-+.
T Consensus 254 ~mL~N----ERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 254 YMLVN----ERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred hhhhh----HHHHHHHHHHHhhcCCCCcccCcc
Confidence 22211 122222245779999999987653
No 185
>PLN02823 spermine synthase
Probab=98.98 E-value=4.3e-09 Score=90.88 Aligned_cols=111 Identities=14% Similarity=0.308 Sum_probs=82.3
Q ss_pred CCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCC----CcceEEEEccccCCc--cCCCccEEEe
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG----FSCIKFLVDDVLDTK--LERQFQLVMD 171 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~----~~~~~~~~~d~~~~~--~~~~fD~v~~ 171 (278)
.+++||.||+|.|..+..++++ +..+|+.+|+++..++.|++.+...+ -++++++.+|....- ..++||+|+.
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4579999999999999998886 45689999999999999999876431 256999999998753 3578999998
Q ss_pred CCccceeccCCCChhhHHHHHH-HHHhcccCCcEEEEEec
Q 023703 172 KGTLDAIGLHPDGPLKRIMYWD-SVSKLVAPGGLLVITSC 210 (278)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~ 210 (278)
... +-....+....-...+++ .+++.|+|||++++...
T Consensus 183 D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 183 DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 632 211101111123456777 89999999999887643
No 186
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.98 E-value=2e-09 Score=85.92 Aligned_cols=107 Identities=21% Similarity=0.315 Sum_probs=69.8
Q ss_pred CCCeEEEEecCCC----HHHHHHhh---C--C-CCcEEEEeCChHHHHHHHHHhh-------------------hCC---
Q 023703 99 SSWSVLDIGTGNG----LLLQELSK---Q--G-FSDLTGVDYSEDAINLAQSLAN-------------------RDG--- 146 (278)
Q Consensus 99 ~~~~vLDiGcG~G----~~~~~l~~---~--~-~~~v~~~D~s~~~i~~a~~~~~-------------------~~~--- 146 (278)
+..+|+..||++| .+++.+.+ . + .-+|+|+|+|+.+++.|++-.- ..+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4569999999999 34444555 1 2 1289999999999999976420 001
Q ss_pred -C-----cceEEEEccccC-CccCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 147 -F-----SCIKFLVDDVLD-TKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 147 -~-----~~~~~~~~d~~~-~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
+ ..|.|.+.|+.+ .+..+.||+|+|.+++-.+. ......+++.+.+.|+|||.|++...
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~-----~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFD-----PETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS------HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeC-----HHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 0 258999999999 45578999999999986553 55778889999999999999999743
No 187
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.97 E-value=5.5e-09 Score=90.09 Aligned_cols=118 Identities=19% Similarity=0.179 Sum_probs=90.7
Q ss_pred hccccCCCCeEEEEecCCCHHHHHHhhCCC---------------------------------C-------cEEEEeCCh
Q 023703 93 ENDKYLSSWSVLDIGTGNGLLLQELSKQGF---------------------------------S-------DLTGVDYSE 132 (278)
Q Consensus 93 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---------------------------------~-------~v~~~D~s~ 132 (278)
.+.+-.++..++|..||+|++.+..|..+. + .++|+|+++
T Consensus 185 ~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~ 264 (381)
T COG0116 185 LLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDP 264 (381)
T ss_pred HHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCH
Confidence 344556667999999999999998887641 1 277999999
Q ss_pred HHHHHHHHHhhhCCCcc-eEEEEccccCCccC-CCccEEEeCCccceeccCCCCh-h-hHHHHHHHHHhcccCCcEEEEE
Q 023703 133 DAINLAQSLANRDGFSC-IKFLVDDVLDTKLE-RQFQLVMDKGTLDAIGLHPDGP-L-KRIMYWDSVSKLVAPGGLLVIT 208 (278)
Q Consensus 133 ~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~LkpgG~l~~~ 208 (278)
.+++.|+.|+...|+.. |+|.++|+..+..+ +.+|+||+|+++. ..+..... . -...+.+.+++.++--+.++++
T Consensus 265 r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYG-eRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~t 343 (381)
T COG0116 265 RHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYG-ERLGSEALVAKLYREFGRTLKRLLAGWSRYVFT 343 (381)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcc-hhcCChhhHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 99999999999999866 99999999998766 8999999999995 22222211 1 2345556777888887888887
Q ss_pred ecC
Q 023703 209 SCN 211 (278)
Q Consensus 209 ~~~ 211 (278)
+..
T Consensus 344 t~e 346 (381)
T COG0116 344 TSE 346 (381)
T ss_pred ccH
Confidence 653
No 188
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.97 E-value=7.6e-09 Score=90.48 Aligned_cols=85 Identities=25% Similarity=0.359 Sum_probs=56.8
Q ss_pred ccccCcccccccccccchhhhcc---ccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc
Q 023703 73 SISQGHMLNHVEDLKSEPVEEND---KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC 149 (278)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~ 149 (278)
.+.++.+...-......++..+. ...++ +|||+.||.|.+++.++... .+|+|+|+++.+++.|++|++.+++.|
T Consensus 168 ~~~~~sFfQvN~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N~i~n 245 (352)
T PF05958_consen 168 RISPGSFFQVNPEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLNGIDN 245 (352)
T ss_dssp EEETTS---SBHHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHTT--S
T ss_pred EECCCcCccCcHHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHcCCCc
Confidence 34444444333333444444332 22233 89999999999999999984 699999999999999999999999999
Q ss_pred eEEEEccccC
Q 023703 150 IKFLVDDVLD 159 (278)
Q Consensus 150 ~~~~~~d~~~ 159 (278)
++|+.+++.+
T Consensus 246 ~~f~~~~~~~ 255 (352)
T PF05958_consen 246 VEFIRGDAED 255 (352)
T ss_dssp EEEEE--SHH
T ss_pred ceEEEeeccc
Confidence 9999887654
No 189
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=98.96 E-value=7.7e-09 Score=91.09 Aligned_cols=108 Identities=31% Similarity=0.450 Sum_probs=92.2
Q ss_pred eEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCccceecc
Q 023703 102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLDAIGL 180 (278)
Q Consensus 102 ~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~~~~~~ 180 (278)
++|-+|||...++..+.+.|+..|+.+|+|+..++.+..... ...+-+.+...|+....+ +++||+|+..+++|++..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~ 129 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE 129 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc-cCCcceEEEEecchhccCCCcceeEEEecCccccccC
Confidence 899999999999999999999999999999999999887654 222358889999988775 689999999999999976
Q ss_pred CCCChh---hHHHHHHHHHhcccCCcEEEEEec
Q 023703 181 HPDGPL---KRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 181 ~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
+..... .....+.++.++|+|||+++..+.
T Consensus 130 de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 130 DEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 655554 556777999999999999888776
No 190
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.95 E-value=3.7e-09 Score=91.25 Aligned_cols=116 Identities=20% Similarity=0.285 Sum_probs=79.8
Q ss_pred ccCCCCeEEEEecCCCHHHHHHhhC--------CCCcEEEEeCChHHHHHHHHHhhhCCCcc--eEEEEccccCCcc---
Q 023703 96 KYLSSWSVLDIGTGNGLLLQELSKQ--------GFSDLTGVDYSEDAINLAQSLANRDGFSC--IKFLVDDVLDTKL--- 162 (278)
Q Consensus 96 ~~~~~~~vLDiGcG~G~~~~~l~~~--------~~~~v~~~D~s~~~i~~a~~~~~~~~~~~--~~~~~~d~~~~~~--- 162 (278)
...++.+|+|.+||+|.+...+... ...+++|+|+++.++..|+.++...+... ..+..+|......
T Consensus 43 ~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~ 122 (311)
T PF02384_consen 43 NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIK 122 (311)
T ss_dssp TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTS
T ss_pred hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccc
Confidence 4456778999999999999888762 23489999999999999998887665432 4688999876543
Q ss_pred CCCccEEEeCCccceeccC--------------CCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703 163 ERQFQLVMDKGTLDAIGLH--------------PDGPLKRIMYWDSVSKLVAPGGLLVITSCN 211 (278)
Q Consensus 163 ~~~fD~v~~~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 211 (278)
..+||+|+++++|...... .........++..+.+.|++||++.+..++
T Consensus 123 ~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 123 NQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp T--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred ccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 3689999999999765110 011122245889999999999998777653
No 191
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.94 E-value=1.5e-08 Score=84.79 Aligned_cols=76 Identities=22% Similarity=0.366 Sum_probs=63.2
Q ss_pred cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCcc---EEEeCC
Q 023703 97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQ---LVMDKG 173 (278)
Q Consensus 97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD---~v~~~~ 173 (278)
..++.+|||+|||+|.++..+++.+ ..|+++|+++.+++.+++++.. .++++++++|+.+.+.. .|| +|++|.
T Consensus 27 ~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~-~~d~~~~vvsNl 102 (253)
T TIGR00755 27 VLEGDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLP-DFPKQLKVVSNL 102 (253)
T ss_pred CCCcCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChh-HcCCcceEEEcC
Confidence 3467899999999999999999996 4799999999999999988754 25799999999886643 466 888887
Q ss_pred ccc
Q 023703 174 TLD 176 (278)
Q Consensus 174 ~~~ 176 (278)
+++
T Consensus 103 Py~ 105 (253)
T TIGR00755 103 PYN 105 (253)
T ss_pred Chh
Confidence 764
No 192
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.89 E-value=3.5e-09 Score=81.44 Aligned_cols=115 Identities=19% Similarity=0.281 Sum_probs=72.4
Q ss_pred eEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCccCC----CccEEEeCCccc
Q 023703 102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLER----QFQLVMDKGTLD 176 (278)
Q Consensus 102 ~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~----~fD~v~~~~~~~ 176 (278)
.|+|++||.|..++.+|+. +.+|+++|+++..++.|+.|++..|+. +++++++|+.+..... .+|+|+.+++..
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPWG 80 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPWG 80 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---BS
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCCC
Confidence 6999999999999999999 468999999999999999999999975 6999999998864322 289999988775
Q ss_pred eec--------c-CCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHH
Q 023703 177 AIG--------L-HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH 219 (278)
Q Consensus 177 ~~~--------~-~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 219 (278)
... + ....+.....+++.+.++ .+. ++++.-.+.+..++..
T Consensus 81 Gp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~-t~n-v~l~LPRn~dl~ql~~ 130 (163)
T PF09445_consen 81 GPSYSKKDVFDLEKSMQPFNLEDLLKAARKI-TPN-VVLFLPRNSDLNQLSQ 130 (163)
T ss_dssp SGGGGGSSSB-TTTSSSS--HHHHHHHHHHH--S--EEEEEETTB-HHHHHH
T ss_pred CccccccCccCHHHccCCCCHHHHHHHHHhh-CCC-EEEEeCCCCCHHHHHH
Confidence 322 1 112222344555555444 332 3344445555555543
No 193
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.89 E-value=2.2e-08 Score=79.16 Aligned_cols=108 Identities=19% Similarity=0.276 Sum_probs=85.8
Q ss_pred eEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccceecc
Q 023703 102 SVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGL 180 (278)
Q Consensus 102 ~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~ 180 (278)
+++|||+|.|.-++.++-. +..+++.+|.+..-+...+.-....+++|++++++.+.+.....+||+|++..+-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~----- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVA----- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSS-----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhc-----
Confidence 8999999999888877765 4458999999999999999999999999999999999984457899999997553
Q ss_pred CCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHH
Q 023703 181 HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHE 220 (278)
Q Consensus 181 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 220 (278)
....+++-+...+++||.+++.-.....+++...
T Consensus 126 ------~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~ 159 (184)
T PF02527_consen 126 ------PLDKLLELARPLLKPGGRLLAYKGPDAEEELEEA 159 (184)
T ss_dssp ------SHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTH
T ss_pred ------CHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHH
Confidence 4456668899999999999998776666655443
No 194
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.89 E-value=2.1e-08 Score=95.40 Aligned_cols=114 Identities=25% Similarity=0.212 Sum_probs=83.5
Q ss_pred CCCCeEEEEecCCCHHHHHHhhC------C-------------------------------------CCcEEEEeCChHH
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQ------G-------------------------------------FSDLTGVDYSEDA 134 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~------~-------------------------------------~~~v~~~D~s~~~ 134 (278)
.++..++|.+||+|.+.+..+.. | ..+++|+|+++.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 45789999999999999887652 0 1259999999999
Q ss_pred HHHHHHHhhhCCCcc-eEEEEccccCCccC---CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcc---cCCcEEEE
Q 023703 135 INLAQSLANRDGFSC-IKFLVDDVLDTKLE---RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLV---APGGLLVI 207 (278)
Q Consensus 135 i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~---~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L---kpgG~l~~ 207 (278)
++.|++|+..+|+.+ +.+.++|+.+.... ++||+|++|++|..-... ..+...+...+.+.+ .+|+.+++
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~---~~~l~~lY~~lg~~lk~~~~g~~~~l 345 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGE---EPALIALYSQLGRRLKQQFGGWNAAL 345 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCc---hHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 999999999999865 89999999886532 469999999998532211 112233333333333 49999988
Q ss_pred EecCCCh
Q 023703 208 TSCNSTK 214 (278)
Q Consensus 208 ~~~~~~~ 214 (278)
.+.....
T Consensus 346 lt~~~~l 352 (702)
T PRK11783 346 FSSSPEL 352 (702)
T ss_pred EeCCHHH
Confidence 8776543
No 195
>PRK04148 hypothetical protein; Provisional
Probab=98.88 E-value=2.5e-08 Score=73.97 Aligned_cols=68 Identities=24% Similarity=0.463 Sum_probs=57.3
Q ss_pred CCCeEEEEecCCCH-HHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc--CCCccEEEeCCc
Q 023703 99 SSWSVLDIGTGNGL-LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDKGT 174 (278)
Q Consensus 99 ~~~~vLDiGcG~G~-~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~v~~~~~ 174 (278)
++.+|||||||+|. ++..|++.|+ +|+++|+++.+++.++++ .+.++.+|+++..+ -+.+|+|++..+
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p~~~~y~~a~liysirp 86 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL-------GLNAFVDDLFNPNLEIYKNAKLIYSIRP 86 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh-------CCeEEECcCCCCCHHHHhcCCEEEEeCC
Confidence 45789999999995 8999998886 899999999999988774 36889999998765 378999997543
No 196
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.88 E-value=7.4e-09 Score=84.56 Aligned_cols=89 Identities=16% Similarity=0.211 Sum_probs=59.0
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHH-HHHHhhhCCCcce-EEEEccccCCcc-----C-CCccEE
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINL-AQSLANRDGFSCI-KFLVDDVLDTKL-----E-RQFQLV 169 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~-a~~~~~~~~~~~~-~~~~~d~~~~~~-----~-~~fD~v 169 (278)
.++.+|||+|||+|.++..+++.|..+|+|+|+++.++.. .+++ +++ .+...|+..... + ..+|++
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~------~~v~~~~~~ni~~~~~~~~~~d~~~~Dvs 147 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD------ERVKVLERTNIRYVTPADIFPDFATFDVS 147 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC------CCeeEeecCCcccCCHhHcCCCceeeeEE
Confidence 4677999999999999999999987799999999987765 3322 122 233334432211 1 234444
Q ss_pred EeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703 170 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 208 (278)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 208 (278)
+. .....+..+.++|+| |.+++.
T Consensus 148 fi---------------S~~~~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 148 FI---------------SLISILPELDLLLNP-NDLTLL 170 (228)
T ss_pred Ee---------------ehHhHHHHHHHHhCc-CeEEEE
Confidence 43 222245889999999 776654
No 197
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.87 E-value=2e-08 Score=84.39 Aligned_cols=107 Identities=21% Similarity=0.326 Sum_probs=85.6
Q ss_pred CeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCC----CcceEEEEccccCCc--cCCCccEEEeCC
Q 023703 101 WSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDG----FSCIKFLVDDVLDTK--LERQFQLVMDKG 173 (278)
Q Consensus 101 ~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~----~~~~~~~~~d~~~~~--~~~~fD~v~~~~ 173 (278)
++||-||-|.|..+..+.++. ..+++.+|+++..++.|++.+.... -++++++..|..++- ...+||+|+.+.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 699999999999999999994 5699999999999999999987654 356899999998764 245899999865
Q ss_pred ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
+=. . .+........+++.+++.|+|+|+++..+.
T Consensus 158 tdp-~--gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~ 191 (282)
T COG0421 158 TDP-V--GPAEALFTEEFYEGCRRALKEDGIFVAQAG 191 (282)
T ss_pred CCC-C--CcccccCCHHHHHHHHHhcCCCcEEEEecC
Confidence 422 1 222223446788999999999999999843
No 198
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.85 E-value=4.6e-09 Score=83.72 Aligned_cols=113 Identities=19% Similarity=0.238 Sum_probs=89.4
Q ss_pred cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc--ceEEEEccccCCc---cCCCccEEEe
Q 023703 97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTK---LERQFQLVMD 171 (278)
Q Consensus 97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~--~~~~~~~d~~~~~---~~~~fD~v~~ 171 (278)
..++.+|||.+.|-|..++..+++|+.+|+.++.+|..++.|+-|==..++. .++++.+|+.+.- .+++||+|+-
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEee
Confidence 4568999999999999999999999879999999999999998663333322 4799999998753 3578999997
Q ss_pred CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703 172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 213 (278)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 213 (278)
+++=-.+ .+..-...+.+++.|+|||||.++--+.++.
T Consensus 212 DPPRfS~----AgeLYseefY~El~RiLkrgGrlFHYvG~Pg 249 (287)
T COG2521 212 DPPRFSL----AGELYSEEFYRELYRILKRGGRLFHYVGNPG 249 (287)
T ss_pred CCCccch----hhhHhHHHHHHHHHHHcCcCCcEEEEeCCCC
Confidence 6653222 2344567888999999999999988776655
No 199
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.85 E-value=9.9e-09 Score=86.57 Aligned_cols=105 Identities=16% Similarity=0.266 Sum_probs=78.4
Q ss_pred CCeEEEEecCCC----HHHHHHhhC-C----CCcEEEEeCChHHHHHHHHHhhh-----------------------CC-
Q 023703 100 SWSVLDIGTGNG----LLLQELSKQ-G----FSDLTGVDYSEDAINLAQSLANR-----------------------DG- 146 (278)
Q Consensus 100 ~~~vLDiGcG~G----~~~~~l~~~-~----~~~v~~~D~s~~~i~~a~~~~~~-----------------------~~- 146 (278)
..+|+..||+|| .+++.+.+. + .-+|+|+|+|+.+++.|++..-. .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 469999999999 344444442 1 12799999999999999876210 01
Q ss_pred ------C-cceEEEEccccCCc--cCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 147 ------F-SCIKFLVDDVLDTK--LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 147 ------~-~~~~~~~~d~~~~~--~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
+ ..|.|.+.|+.+.+ +.+.||+|+|.+++-++. ......+++.+.+.|+|||.|++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~-----~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFD-----KTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCC-----HHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 1 23789999998853 358899999998875552 4567788899999999999887764
No 200
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.85 E-value=1.6e-08 Score=80.20 Aligned_cols=104 Identities=17% Similarity=0.193 Sum_probs=81.0
Q ss_pred eEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcce-EEEEccccCCcc---------CCCccEEE
Q 023703 102 SVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDDVLDTKL---------ERQFQLVM 170 (278)
Q Consensus 102 ~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~-~~~~~d~~~~~~---------~~~fD~v~ 170 (278)
+|||||||||.-+..++++ +.-.-.-.|.++......+......+++|+ .-+..|+..... .++||.|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 5999999999999999998 333677789999988777777777776663 345677766421 35899999
Q ss_pred eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
+.++++.++ ......+++.+.++|+|||.|++-.+
T Consensus 108 ~~N~lHI~p-----~~~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 108 CINMLHISP-----WSAVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred ehhHHHhcC-----HHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 998886543 44667888999999999999999643
No 201
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.81 E-value=3.8e-08 Score=81.73 Aligned_cols=109 Identities=19% Similarity=0.257 Sum_probs=81.0
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCC----CcceEEEEccccCCc--cCC-CccEE
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDG----FSCIKFLVDDVLDTK--LER-QFQLV 169 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~----~~~~~~~~~d~~~~~--~~~-~fD~v 169 (278)
..+++||-||-|.|..+..+.++. ..+|+.+|+++..++.|++.+.... -++++++.+|....- ..+ +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 357899999999999999999884 4689999999999999999876532 146999999997753 234 89999
Q ss_pred EeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 170 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
+....- +..+....-...+++.+++.|+|||++++..
T Consensus 155 i~D~~d---p~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTD---PDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEESSS---TTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCC---CCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 975432 1111111234678899999999999999875
No 202
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.80 E-value=1.1e-08 Score=80.92 Aligned_cols=112 Identities=16% Similarity=0.256 Sum_probs=68.3
Q ss_pred cchhhhccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCc
Q 023703 88 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQF 166 (278)
Q Consensus 88 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~f 166 (278)
..++..+....++..|.|+|||.+.++..+... . +|...|+-+. +-.+..+|+...|+ ++..
T Consensus 61 d~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~-~-~V~SfDLva~---------------n~~Vtacdia~vPL~~~sv 123 (219)
T PF05148_consen 61 DVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNK-H-KVHSFDLVAP---------------NPRVTACDIANVPLEDESV 123 (219)
T ss_dssp HHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-----EEEEESS-S---------------STTEEES-TTS-S--TT-E
T ss_pred HHHHHHHHhcCCCEEEEECCCchHHHHHhcccC-c-eEEEeeccCC---------------CCCEEEecCccCcCCCCce
Confidence 345555555566779999999999999776533 3 7999998432 22467899988876 5889
Q ss_pred cEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC---hHHHHHHHhhh
Q 023703 167 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST---KDELVHEVSNL 224 (278)
Q Consensus 167 D~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~~~~~ 224 (278)
|+++..-++... +...++.++.|+|||||.|.|.+.... ...+.+.+..+
T Consensus 124 Dv~VfcLSLMGT--------n~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~ 176 (219)
T PF05148_consen 124 DVAVFCLSLMGT--------NWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKL 176 (219)
T ss_dssp EEEEEES---SS---------HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCT
T ss_pred eEEEEEhhhhCC--------CcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHC
Confidence 999875554322 778889999999999999999864433 34444444433
No 203
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.79 E-value=8.7e-08 Score=81.12 Aligned_cols=73 Identities=15% Similarity=0.112 Sum_probs=60.5
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCC--CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc--CC---CccEEE
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ER---QFQLVM 170 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~---~fD~v~ 170 (278)
.++..+||.+||.|..+..+++.. ..+|+|+|.++.+++.|++++.. ..++.++++|..+... +. ++|.|+
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~~~~~~vDgIl 95 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLAEGLGKVDGIL 95 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHHcCCCccCEEE
Confidence 567799999999999999999883 35899999999999999998865 3579999999987531 22 789888
Q ss_pred eC
Q 023703 171 DK 172 (278)
Q Consensus 171 ~~ 172 (278)
.+
T Consensus 96 ~D 97 (296)
T PRK00050 96 LD 97 (296)
T ss_pred EC
Confidence 65
No 204
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.79 E-value=1.5e-08 Score=85.87 Aligned_cols=144 Identities=22% Similarity=0.267 Sum_probs=107.4
Q ss_pred ccccchhhhccccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-
Q 023703 85 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK- 161 (278)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~- 161 (278)
+...++...+....++.+|||++++.|.=+..+++. + ...+++.|+++.-+...+.+++..|+.++.....|.....
T Consensus 71 d~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~ 150 (283)
T PF01189_consen 71 DESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDP 150 (283)
T ss_dssp HHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHH
T ss_pred ccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccc
Confidence 444445555566778899999999999998888886 2 3489999999999999999999999988888888887753
Q ss_pred --cCCCccEEEeCCccceecc---CCC--------Ch----hhHHHHHHHHHhcc----cCCcEEEEEecCCChHHHHHH
Q 023703 162 --LERQFQLVMDKGTLDAIGL---HPD--------GP----LKRIMYWDSVSKLV----APGGLLVITSCNSTKDELVHE 220 (278)
Q Consensus 162 --~~~~fD~v~~~~~~~~~~~---~~~--------~~----~~~~~~l~~~~~~L----kpgG~l~~~~~~~~~~~~~~~ 220 (278)
....||.|+.+.+-..... ++. .. .....+|+.+.+.+ ||||+++.++|+-..+|....
T Consensus 151 ~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~v 230 (283)
T PF01189_consen 151 KKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEV 230 (283)
T ss_dssp HHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHH
T ss_pred cccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHH
Confidence 2346999998665443321 111 11 12257889999999 999999999998877776666
Q ss_pred Hhhhhhcc
Q 023703 221 VSNLSQRR 228 (278)
Q Consensus 221 ~~~~~~~~ 228 (278)
+..+-.++
T Consensus 231 V~~fl~~~ 238 (283)
T PF01189_consen 231 VEKFLKRH 238 (283)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhC
Confidence 66555444
No 205
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.77 E-value=3.8e-08 Score=82.01 Aligned_cols=106 Identities=16% Similarity=0.225 Sum_probs=80.3
Q ss_pred CCCeEEEEecCCC----HHHHHHhhCC------CCcEEEEeCChHHHHHHHHHhhh-----C----------------C-
Q 023703 99 SSWSVLDIGTGNG----LLLQELSKQG------FSDLTGVDYSEDAINLAQSLANR-----D----------------G- 146 (278)
Q Consensus 99 ~~~~vLDiGcG~G----~~~~~l~~~~------~~~v~~~D~s~~~i~~a~~~~~~-----~----------------~- 146 (278)
...+|+-+||+|| .+++.+.+.. .-+|+|+|+|..+++.|+.-.-. . +
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 3679999999999 4555555542 13899999999999999654211 0 1
Q ss_pred ------C-cceEEEEccccCCc-cCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 147 ------F-SCIKFLVDDVLDTK-LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 147 ------~-~~~~~~~~d~~~~~-~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
+ ..|.|...|+.+.. ..+.||+|+|.+++-.+. ......++...+..|+|||.|++-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd-----~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFD-----EETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeC-----HHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 1 23788888888876 678899999999986553 4466788899999999999999964
No 206
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=3.6e-08 Score=77.46 Aligned_cols=104 Identities=17% Similarity=0.316 Sum_probs=81.0
Q ss_pred cccCCCCeEEEEecCCCHHHHHHhhC-CC--CcEEEEeCChHHHHHHHHHhhhCC----------CcceEEEEccccCCc
Q 023703 95 DKYLSSWSVLDIGTGNGLLLQELSKQ-GF--SDLTGVDYSEDAINLAQSLANRDG----------FSCIKFLVDDVLDTK 161 (278)
Q Consensus 95 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~~--~~v~~~D~s~~~i~~a~~~~~~~~----------~~~~~~~~~d~~~~~ 161 (278)
.++.|+.+.||+|+|+|.++..++.. +. ...+|||.-++.++.+++++...- ..++.++.+|.....
T Consensus 78 ~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~ 157 (237)
T KOG1661|consen 78 DHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGY 157 (237)
T ss_pred HhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccC
Confidence 45789999999999999999888854 22 245999999999999999976532 135788899998865
Q ss_pred c-CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703 162 L-ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 211 (278)
Q Consensus 162 ~-~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 211 (278)
. ..+||.|.+-....-++ +++...|+|||.+++-...
T Consensus 158 ~e~a~YDaIhvGAaa~~~p-------------q~l~dqL~~gGrllip~~~ 195 (237)
T KOG1661|consen 158 AEQAPYDAIHVGAAASELP-------------QELLDQLKPGGRLLIPVGQ 195 (237)
T ss_pred CccCCcceEEEccCccccH-------------HHHHHhhccCCeEEEeecc
Confidence 4 57899999864433332 7888999999999987653
No 207
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.73 E-value=9.5e-08 Score=87.45 Aligned_cols=115 Identities=13% Similarity=0.031 Sum_probs=84.9
Q ss_pred CCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc---cCCCccEEEeCCc
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LERQFQLVMDKGT 174 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~---~~~~fD~v~~~~~ 174 (278)
.+..+||||||.|.++..+|.. +...++|+|++...+..+.+.....++.|+.++..|+.... +++++|.|+.+.+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 3568999999999999999998 44589999999999999988888888889999888874322 3466777765432
Q ss_pred cceec-cCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703 175 LDAIG-LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 213 (278)
Q Consensus 175 ~~~~~-~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 213 (278)
=-+.. -|.....-...+++.+.++|+|||.+.+.+-...
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~ 466 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIEN 466 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHH
Confidence 21111 0222222335788999999999999998875543
No 208
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.71 E-value=4.9e-08 Score=90.21 Aligned_cols=113 Identities=15% Similarity=0.161 Sum_probs=78.4
Q ss_pred CCCeEEEEecCCCHHHHHHhhCC---------CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc------cC
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQG---------FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------LE 163 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~~---------~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~------~~ 163 (278)
...+|||.|||+|.+...++... ..+++|+|+++.+++.++.++...+...+.+.+.|..... ..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 34689999999999998887641 1378999999999999999987765223555555543321 13
Q ss_pred CCccEEEeCCccceeccCCC--------------------------------------C-hhhHHH-HHHHHHhcccCCc
Q 023703 164 RQFQLVMDKGTLDAIGLHPD--------------------------------------G-PLKRIM-YWDSVSKLVAPGG 203 (278)
Q Consensus 164 ~~fD~v~~~~~~~~~~~~~~--------------------------------------~-~~~~~~-~l~~~~~~LkpgG 203 (278)
++||+|+.|+++..+..... + ...... +++.+.++|+|||
T Consensus 111 ~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~G 190 (524)
T TIGR02987 111 DLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKNG 190 (524)
T ss_pred CcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCCC
Confidence 58999999999975432110 0 011122 3467889999999
Q ss_pred EEEEEecC
Q 023703 204 LLVITSCN 211 (278)
Q Consensus 204 ~l~~~~~~ 211 (278)
++.+..+.
T Consensus 191 ~~~~I~P~ 198 (524)
T TIGR02987 191 YVSIISPA 198 (524)
T ss_pred EEEEEECh
Confidence 99887664
No 209
>PRK00536 speE spermidine synthase; Provisional
Probab=98.68 E-value=2.1e-07 Score=77.40 Aligned_cols=99 Identities=15% Similarity=0.112 Sum_probs=74.8
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC----CCcceEEEEccccCCccCCCccEEEeCC
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD----GFSCIKFLVDDVLDTKLERQFQLVMDKG 173 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~----~~~~~~~~~~d~~~~~~~~~fD~v~~~~ 173 (278)
..+++||-||.|.|..+..+.++. .+|+.+|+++..++.+++.+... .-++++++.. +.+ ...++||+|+...
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~-~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD-LDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh-ccCCcCCEEEEcC
Confidence 456899999999999999999996 49999999999999999965432 1134666541 211 1236899999875
Q ss_pred ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703 174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 211 (278)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 211 (278)
.++ ..+.+.+++.|+|||+++....+
T Consensus 148 ~~~------------~~fy~~~~~~L~~~Gi~v~Qs~s 173 (262)
T PRK00536 148 EPD------------IHKIDGLKRMLKEDGVFISVAKH 173 (262)
T ss_pred CCC------------hHHHHHHHHhcCCCcEEEECCCC
Confidence 421 34558899999999999997533
No 210
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.66 E-value=9.7e-08 Score=74.29 Aligned_cols=104 Identities=18% Similarity=0.228 Sum_probs=80.4
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccce
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA 177 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~ 177 (278)
-.+++|||+|+|+|..++..+..|.+.|+..|+.|..+...+-|.+.+++ ++.+...|... .+..||+++....+..
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g--~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG--SPPAFDLLLAGDLFYN 154 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC--CCcceeEEEeeceecC
Confidence 46889999999999999999999988999999999999999999999986 79999999876 5678999998766532
Q ss_pred eccCCCChhhHHHHHHHHHhcccCCcEEEE-EecCC
Q 023703 178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVI-TSCNS 212 (278)
Q Consensus 178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~-~~~~~ 212 (278)
-. ....++. +.+.|+..|..++ .++..
T Consensus 155 ~~-------~a~~l~~-~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 155 HT-------EADRLIP-WKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred ch-------HHHHHHH-HHHHHHhCCCEEEEeCCCC
Confidence 21 3334445 5555555555444 44433
No 211
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=1.2e-07 Score=78.17 Aligned_cols=76 Identities=17% Similarity=0.193 Sum_probs=66.9
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCC--CccEEEeCCcc
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLER--QFQLVMDKGTL 175 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~--~fD~v~~~~~~ 175 (278)
.++..|||||+|.|.+|..|++++. +|+++|+++.+++..++.+... .+++++++|+....++. .++.|++|-+|
T Consensus 29 ~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~--~n~~vi~~DaLk~d~~~l~~~~~vVaNlPY 105 (259)
T COG0030 29 SPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPY--DNLTVINGDALKFDFPSLAQPYKVVANLPY 105 (259)
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcccc--cceEEEeCchhcCcchhhcCCCEEEEcCCC
Confidence 4578999999999999999999964 7999999999999999987633 57999999999987765 78899999888
Q ss_pred c
Q 023703 176 D 176 (278)
Q Consensus 176 ~ 176 (278)
.
T Consensus 106 ~ 106 (259)
T COG0030 106 N 106 (259)
T ss_pred c
Confidence 5
No 212
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.65 E-value=9.1e-08 Score=77.52 Aligned_cols=100 Identities=14% Similarity=0.217 Sum_probs=73.7
Q ss_pred cchhhhccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCc
Q 023703 88 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQF 166 (278)
Q Consensus 88 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~f 166 (278)
..++..+........|.|+|||.+.++. ... .+|+..|+-+. +-+++.+|+...+. +++.
T Consensus 169 d~ii~~ik~r~~~~vIaD~GCGEakiA~---~~~-~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~sv 229 (325)
T KOG3045|consen 169 DVIIRKIKRRPKNIVIADFGCGEAKIAS---SER-HKVHSFDLVAV---------------NERVIACDMRNVPLEDESV 229 (325)
T ss_pred HHHHHHHHhCcCceEEEecccchhhhhh---ccc-cceeeeeeecC---------------CCceeeccccCCcCccCcc
Confidence 3345555555667789999999998876 222 37999997332 45778999999876 6889
Q ss_pred cEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703 167 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK 214 (278)
Q Consensus 167 D~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 214 (278)
|+++..-++.. .+...++.++.|+|+|||.+++.......
T Consensus 230 DvaV~CLSLMg--------tn~~df~kEa~RiLk~gG~l~IAEv~SRf 269 (325)
T KOG3045|consen 230 DVAVFCLSLMG--------TNLADFIKEANRILKPGGLLYIAEVKSRF 269 (325)
T ss_pred cEEEeeHhhhc--------ccHHHHHHHHHHHhccCceEEEEehhhhc
Confidence 99887544422 26778889999999999999998654443
No 213
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.64 E-value=2e-08 Score=79.37 Aligned_cols=76 Identities=21% Similarity=0.194 Sum_probs=64.6
Q ss_pred CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCcc-----CCCccEEEeC
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKL-----ERQFQLVMDK 172 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~-----~~~fD~v~~~ 172 (278)
....|+|..||.|..++..+..++ .|+++|++|.-+..|+.|++-.|+++ ++|+++|+.+... ...+|+|+..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 445899999999999999999975 89999999999999999999999975 9999999988642 2346688776
Q ss_pred Ccc
Q 023703 173 GTL 175 (278)
Q Consensus 173 ~~~ 175 (278)
++.
T Consensus 173 ppw 175 (263)
T KOG2730|consen 173 PPW 175 (263)
T ss_pred CCC
Confidence 655
No 214
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.64 E-value=3.4e-08 Score=78.59 Aligned_cols=113 Identities=19% Similarity=0.198 Sum_probs=87.1
Q ss_pred CCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCcccee
Q 023703 100 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLDAI 178 (278)
Q Consensus 100 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~~~~ 178 (278)
...++|||||-|.+..++...+..+++-+|.|-.|++.++.. +..++ .+...++|-..+++ +.++|+|++...++++
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i-~~~~~v~DEE~Ldf~ens~DLiisSlslHW~ 150 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI-ETSYFVGDEEFLDFKENSVDLIISSLSLHWT 150 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCce-EEEEEecchhcccccccchhhhhhhhhhhhh
Confidence 348999999999999999999877999999999999998863 22333 36677888777765 5789999998888766
Q ss_pred ccCCCChhhHHHHHHHHHhcccCCcEEEEEec-CCChHHHHHHH
Q 023703 179 GLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC-NSTKDELVHEV 221 (278)
Q Consensus 179 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~ 221 (278)
. +......+++..|||+|.++.+-. ..+..++...+
T Consensus 151 N-------dLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~sl 187 (325)
T KOG2940|consen 151 N-------DLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSL 187 (325)
T ss_pred c-------cCchHHHHHHHhcCCCccchhHHhccccHHHHHHHh
Confidence 4 444445889999999999988754 44445554433
No 215
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=1.1e-07 Score=84.29 Aligned_cols=89 Identities=24% Similarity=0.297 Sum_probs=68.4
Q ss_pred ccccccCcccccccccccchhh---hccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC
Q 023703 71 CISISQGHMLNHVEDLKSEPVE---ENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF 147 (278)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~ 147 (278)
+..+.++.++.........+-. .......++.+||+.||||.+++.+++. ..+|+|+++++.+++-|+.|++.+|+
T Consensus 352 tF~iSp~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~Ngi 430 (534)
T KOG2187|consen 352 TFRISPGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGI 430 (534)
T ss_pred EEEECCchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCc
Confidence 3455666665444333222222 2345567789999999999999999997 56999999999999999999999999
Q ss_pred cceEEEEccccCC
Q 023703 148 SCIKFLVDDVLDT 160 (278)
Q Consensus 148 ~~~~~~~~d~~~~ 160 (278)
+|.+|+++-+.+.
T Consensus 431 sNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 431 SNATFIVGQAEDL 443 (534)
T ss_pred cceeeeecchhhc
Confidence 9999999965553
No 216
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.61 E-value=1.9e-07 Score=74.69 Aligned_cols=112 Identities=16% Similarity=0.296 Sum_probs=87.6
Q ss_pred cchhhhccccCCCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCc---
Q 023703 88 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTK--- 161 (278)
Q Consensus 88 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~--- 161 (278)
.+++..+.+...++++||||.-||..++.+|.. ...+|+++|+++.+.+.+.+..+..|+.. |++++++..+.-
T Consensus 62 g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l 141 (237)
T KOG1663|consen 62 GQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDEL 141 (237)
T ss_pred HHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHH
Confidence 344555555567789999999999888888776 12389999999999999999999888865 999999987742
Q ss_pred ----cCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 162 ----LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 162 ----~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
..++||.++... ... ....+++++.+++|+||++++..
T Consensus 142 ~~~~~~~tfDfaFvDa---------dK~-nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 142 LADGESGTFDFAFVDA---------DKD-NYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred HhcCCCCceeEEEEcc---------chH-HHHHHHHHHHhhcccccEEEEec
Confidence 146788888532 222 44477899999999999999975
No 217
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.57 E-value=3.1e-07 Score=73.86 Aligned_cols=102 Identities=16% Similarity=0.193 Sum_probs=82.3
Q ss_pred CCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCC-ccEEEeCCccce
Q 023703 100 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQ-FQLVMDKGTLDA 177 (278)
Q Consensus 100 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~-fD~v~~~~~~~~ 177 (278)
+.+++|||+|.|.-++.++-. +..+|+-+|....-+...+......+++|++++++.+.+.....+ ||+|.+..+.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva-- 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA-- 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc--
Confidence 579999999999999888733 334799999999999999999999999899999999998765545 9999987543
Q ss_pred eccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703 178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 212 (278)
Q Consensus 178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 212 (278)
....+.+-+...+|+||.++..-...
T Consensus 146 ---------~L~~l~e~~~pllk~~g~~~~~k~~~ 171 (215)
T COG0357 146 ---------SLNVLLELCLPLLKVGGGFLAYKGLA 171 (215)
T ss_pred ---------chHHHHHHHHHhcccCCcchhhhHHh
Confidence 33445577889999999876554433
No 218
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.53 E-value=1.4e-07 Score=72.89 Aligned_cols=101 Identities=16% Similarity=0.193 Sum_probs=80.3
Q ss_pred CeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccceecc
Q 023703 101 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGL 180 (278)
Q Consensus 101 ~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~ 180 (278)
..+.|+|+|+|.++...+.. +.+|++++.+|.-.+.|.+|++..|..+++++.+|+.+..+ +..|+|+|-. +|...+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f-e~ADvvicEm-lDTaLi 110 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF-ENADVVICEM-LDTALI 110 (252)
T ss_pred hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc-cccceeHHHH-hhHHhh
Confidence 58999999999999988887 66999999999999999999988888889999999998766 5678888743 222211
Q ss_pred CCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703 181 HPDGPLKRIMYWDSVSKLVAPGGLLVIT 208 (278)
Q Consensus 181 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 208 (278)
. +.....+..+.+.|+.++.++-.
T Consensus 111 ~----E~qVpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 111 E----EKQVPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred c----ccccHHHHHHHHHhhcCCccccH
Confidence 1 23445567778888999888754
No 219
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.50 E-value=6.7e-07 Score=73.13 Aligned_cols=80 Identities=20% Similarity=0.266 Sum_probs=67.0
Q ss_pred cccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCccCCCccEEEeCC
Q 023703 95 DKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKG 173 (278)
Q Consensus 95 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~fD~v~~~~ 173 (278)
....++..|||+|.|||.++..|.+.| ++|++++++|.++....++.+.....+ .+++++|...... ..||.+++|-
T Consensus 54 a~~k~tD~VLEvGPGTGnLT~~lLe~~-kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~-P~fd~cVsNl 131 (315)
T KOG0820|consen 54 ADLKPTDVVLEVGPGTGNLTVKLLEAG-KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL-PRFDGCVSNL 131 (315)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHhc-CeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-cccceeeccC
Confidence 345788899999999999999999997 589999999999999999987554333 8999999987532 4589999987
Q ss_pred ccc
Q 023703 174 TLD 176 (278)
Q Consensus 174 ~~~ 176 (278)
++.
T Consensus 132 Pyq 134 (315)
T KOG0820|consen 132 PYQ 134 (315)
T ss_pred Ccc
Confidence 774
No 220
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.44 E-value=2.3e-07 Score=73.65 Aligned_cols=113 Identities=23% Similarity=0.333 Sum_probs=68.8
Q ss_pred CCCeEEEEecCCCHHHHHHhhCC--CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc--------cC---CC
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--------LE---RQ 165 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~--------~~---~~ 165 (278)
++.+|||+||++|.++..+.+++ ..+|+|+|+.+. ...+++.++++|..+.. .. ++
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHHhhhhhccccccC
Confidence 45799999999999999999996 459999999887 11134666677765431 11 58
Q ss_pred ccEEEeCCccceeccCCCC----hhhHHHHHHHHHhcccCCcEEEEEecCC-ChHHHHHHHh
Q 023703 166 FQLVMDKGTLDAIGLHPDG----PLKRIMYWDSVSKLVAPGGLLVITSCNS-TKDELVHEVS 222 (278)
Q Consensus 166 fD~v~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~~~~ 222 (278)
+|+|+++...........+ .......+.-+.+.|+|||.+++..... ...++...+.
T Consensus 92 ~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~ 153 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLK 153 (181)
T ss_dssp ESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHH
T ss_pred cceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHH
Confidence 9999998854322210000 1122344456667899999998876543 2235555444
No 221
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.43 E-value=3.6e-06 Score=72.24 Aligned_cols=108 Identities=15% Similarity=0.147 Sum_probs=77.1
Q ss_pred cCCCCeEEEEecCCCHHHHHHhhC----C-CCcEEEEeCChHHHHHHHHHhhhCCCcceEE--EEccccCC----cc---
Q 023703 97 YLSSWSVLDIGTGNGLLLQELSKQ----G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKF--LVDDVLDT----KL--- 162 (278)
Q Consensus 97 ~~~~~~vLDiGcG~G~~~~~l~~~----~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~--~~~d~~~~----~~--- 162 (278)
..++..++|+|||+|.=+..|.+. + ...++++|+|..+++.+.+++....++.+.+ +++|..+. +.
T Consensus 74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~ 153 (319)
T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPEN 153 (319)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccc
Confidence 356678999999999766554442 1 2479999999999999999987444455554 78888653 11
Q ss_pred CCCccEEEeCC-ccceeccCCCChhhHHHHHHHHHh-cccCCcEEEEEe
Q 023703 163 ERQFQLVMDKG-TLDAIGLHPDGPLKRIMYWDSVSK-LVAPGGLLVITS 209 (278)
Q Consensus 163 ~~~fD~v~~~~-~~~~~~~~~~~~~~~~~~l~~~~~-~LkpgG~l~~~~ 209 (278)
.....+++..+ ++.. ..+.....+|+++++ .|+|||.|++..
T Consensus 154 ~~~~r~~~flGSsiGN-----f~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 154 RSRPTTILWLGSSIGN-----FSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred cCCccEEEEeCccccC-----CCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 22356666554 3332 346688899999999 999999998863
No 222
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.43 E-value=5.4e-06 Score=66.77 Aligned_cols=111 Identities=22% Similarity=0.227 Sum_probs=76.8
Q ss_pred EEEEecCCCHHHHHHhhCCC-CcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCccC-CCccEEEeCCccceec
Q 023703 103 VLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLE-RQFQLVMDKGTLDAIG 179 (278)
Q Consensus 103 vLDiGcG~G~~~~~l~~~~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~ 179 (278)
|.||||--|.+...|.+.|. .+++++|+++..++.|+++.+..++.+ ++++.+|..+.-.+ +..|.|+..+.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----- 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----- 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC-----
Confidence 68999999999999999974 489999999999999999999998755 99999998764333 33787775432
Q ss_pred cCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhh
Q 023703 180 LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN 223 (278)
Q Consensus 180 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 223 (278)
+-.....+|+.....++....|++. ++.....++..+..
T Consensus 76 ----GG~lI~~ILe~~~~~~~~~~~lILq-P~~~~~~LR~~L~~ 114 (205)
T PF04816_consen 76 ----GGELIIEILEAGPEKLSSAKRLILQ-PNTHAYELRRWLYE 114 (205)
T ss_dssp -----HHHHHHHHHHTGGGGTT--EEEEE-ESS-HHHHHHHHHH
T ss_pred ----CHHHHHHHHHhhHHHhccCCeEEEe-CCCChHHHHHHHHH
Confidence 1235566777777777666666665 55666666666554
No 223
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.38 E-value=5.2e-06 Score=72.03 Aligned_cols=130 Identities=16% Similarity=0.105 Sum_probs=97.8
Q ss_pred hccccCCCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc---cCCCcc
Q 023703 93 ENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LERQFQ 167 (278)
Q Consensus 93 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~---~~~~fD 167 (278)
.+..++++.+|||+++..|.=+.++|.. .-..|++.|.+..-+...+.++...|+.+..+...|..+.+ ..++||
T Consensus 235 ~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fD 314 (460)
T KOG1122|consen 235 MALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFD 314 (460)
T ss_pred eecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCcccc
Confidence 3455688999999999999877777764 22379999999999999999999999988888888887654 245899
Q ss_pred EEEeCCccce--eccCC------CC-------hhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHh
Q 023703 168 LVMDKGTLDA--IGLHP------DG-------PLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS 222 (278)
Q Consensus 168 ~v~~~~~~~~--~~~~~------~~-------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 222 (278)
-|+...+-.. +..-+ .. ..-..++|..+.+++++||+|+.++|+-..++.-..+.
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~ 384 (460)
T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVD 384 (460)
T ss_pred eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHH
Confidence 9997766554 22111 00 11224677889999999999999999887766555443
No 224
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.38 E-value=2.9e-06 Score=72.26 Aligned_cols=141 Identities=23% Similarity=0.318 Sum_probs=97.3
Q ss_pred hhhhcccccccccCcccccccc---cccchhhhccccCCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHH
Q 023703 64 ASWTKSLCISISQGHMLNHVED---LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQ 139 (278)
Q Consensus 64 ~~w~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~ 139 (278)
..|.++....++-+.-..++++ .+..+...+.......+||-+|.|.|.....+.+.+ ..+|+-+|.+|.+++.++
T Consensus 251 Tr~g~d~rLYldG~LQfsTrDe~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~ 330 (508)
T COG4262 251 TRRGDDLRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELAS 330 (508)
T ss_pred EEecCceEEEEcCceeeeechhhhhhheeeecccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhh
Confidence 3677777667766665555532 111111222223445689999999999999999985 679999999999999999
Q ss_pred HHhhhC-----CC--cceEEEEccccCCcc--CCCccEEEeCCccceeccCCCCh----hhHHHHHHHHHhcccCCcEEE
Q 023703 140 SLANRD-----GF--SCIKFLVDDVLDTKL--ERQFQLVMDKGTLDAIGLHPDGP----LKRIMYWDSVSKLVAPGGLLV 206 (278)
Q Consensus 140 ~~~~~~-----~~--~~~~~~~~d~~~~~~--~~~fD~v~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~ 206 (278)
++.... .. ++++++..|+.++-. .++||.||.+-+ +|..+ .-...+..-+++.|+++|+++
T Consensus 331 ~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~------DP~tps~~rlYS~eFY~ll~~~l~e~Gl~V 404 (508)
T COG4262 331 HATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLP------DPSTPSIGRLYSVEFYRLLSRHLAETGLMV 404 (508)
T ss_pred hhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCC------CCCCcchhhhhhHHHHHHHHHhcCcCceEE
Confidence 553221 11 458999999988643 468999886321 22221 233567788999999999999
Q ss_pred EEec
Q 023703 207 ITSC 210 (278)
Q Consensus 207 ~~~~ 210 (278)
+...
T Consensus 405 vQag 408 (508)
T COG4262 405 VQAG 408 (508)
T ss_pred EecC
Confidence 9753
No 225
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.36 E-value=1.3e-06 Score=70.31 Aligned_cols=105 Identities=18% Similarity=0.237 Sum_probs=63.6
Q ss_pred ccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhh-------hCCC--cceEEEEccccCCcc---
Q 023703 96 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLAN-------RDGF--SCIKFLVDDVLDTKL--- 162 (278)
Q Consensus 96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~-------~~~~--~~~~~~~~d~~~~~~--- 162 (278)
++.++...+|||||.|.....++.. ++.+.+|||+.+...+.|+.... ..|. .++.+..+|+.+...
T Consensus 39 ~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~ 118 (205)
T PF08123_consen 39 NLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKD 118 (205)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHH
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhh
Confidence 3567889999999999988877655 77679999999998887765432 2332 358889999887542
Q ss_pred -CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703 163 -ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 208 (278)
Q Consensus 163 -~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 208 (278)
-...|+|++|...- ..+....+.+...-||+|.+++..
T Consensus 119 ~~s~AdvVf~Nn~~F--------~~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 119 IWSDADVVFVNNTCF--------DPDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp HGHC-SEEEE--TTT---------HHHHHHHHHHHTTS-TT-EEEES
T ss_pred hhcCCCEEEEecccc--------CHHHHHHHHHHHhcCCCCCEEEEC
Confidence 13468999987531 113444446777788998877654
No 226
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.31 E-value=1.3e-06 Score=76.16 Aligned_cols=108 Identities=19% Similarity=0.266 Sum_probs=88.8
Q ss_pred cccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCcc-CCCccEEEeC
Q 023703 95 DKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKL-ERQFQLVMDK 172 (278)
Q Consensus 95 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~-~~~fD~v~~~ 172 (278)
....++..++|+|||.|.....++..+.+.++|+|.++..+..+........+.+ ..++.+|+...++ +..||.+.+.
T Consensus 106 ~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~l 185 (364)
T KOG1269|consen 106 ESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFL 185 (364)
T ss_pred hcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEE
Confidence 3446777899999999999999999865699999999999988888777666654 5567888888765 6889999988
Q ss_pred CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
.+..+.. .....++++.++++|||.++...
T Consensus 186 d~~~~~~-------~~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 186 EVVCHAP-------DLEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred eecccCC-------cHHHHHHHHhcccCCCceEEeHH
Confidence 7776665 66777799999999999998853
No 227
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.29 E-value=5.4e-06 Score=69.16 Aligned_cols=102 Identities=25% Similarity=0.340 Sum_probs=73.0
Q ss_pred CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhh---C------------------------------
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR---D------------------------------ 145 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~---~------------------------------ 145 (278)
...+||-.|||.|+++..++..|+ .+.|.|.|--|+=..+-.+.. .
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 356999999999999999999998 799999999886554433221 0
Q ss_pred -------CCcceEEEEccccCCcc-C---CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703 146 -------GFSCIKFLVDDVLDTKL-E---RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 208 (278)
Q Consensus 146 -------~~~~~~~~~~d~~~~~~-~---~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 208 (278)
.-.++....+|..+... + ++||+|+..--+| ...+...+++.+.++|||||..+=.
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID-------TA~Ni~~Yi~tI~~lLkpgG~WIN~ 201 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID-------TAENIIEYIETIEHLLKPGGYWINF 201 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee-------chHHHHHHHHHHHHHhccCCEEEec
Confidence 00135555666665432 2 5788888753333 2447889999999999999966543
No 228
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.29 E-value=1.9e-06 Score=71.42 Aligned_cols=110 Identities=20% Similarity=0.293 Sum_probs=74.3
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC----------------------------cc
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF----------------------------SC 149 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~----------------------------~~ 149 (278)
.++.++||||||+-..-...+..-+.+|+..|+++..++..++.++..+. ..
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 35779999999996554433433466899999999999877776543210 11
Q ss_pred e-EEEEccccCCcc-------CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 150 I-KFLVDDVLDTKL-------ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 150 ~-~~~~~d~~~~~~-------~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
| .++.+|+++.++ +.+||+|++...++... .+.......++++.++|||||.|++...
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~---~d~~~y~~al~ni~~lLkpGG~Lil~~~ 200 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESAC---KDLDEYRRALRNISSLLKPGGHLILAGV 200 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH----SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHc---CCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 3 367889987643 23599999987777654 3355777888999999999999999753
No 229
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=2e-05 Score=62.79 Aligned_cols=115 Identities=17% Similarity=0.266 Sum_probs=79.0
Q ss_pred CCCCeEEEEecCCCHHHHHHhhC-CC-CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc---------CCCc
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---------ERQF 166 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~---------~~~f 166 (278)
.++..|+|+|+..|.++..+++. +. ..|+|+|+.|-. ..+++.++++|++.... ..++
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~ 112 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------PIPGVIFLQGDITDEDTLEKLLEALGGAPV 112 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------cCCCceEEeeeccCccHHHHHHHHcCCCCc
Confidence 57889999999999999999988 32 259999997752 12569999999988641 2457
Q ss_pred cEEEeCCccceec---cCCCChhh-HHHHHHHHHhcccCCcEEEEEec-CCChHHHHHHHhh
Q 023703 167 QLVMDKGTLDAIG---LHPDGPLK-RIMYWDSVSKLVAPGGLLVITSC-NSTKDELVHEVSN 223 (278)
Q Consensus 167 D~v~~~~~~~~~~---~~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~~~ 223 (278)
|+|++.+.-..-. .++..... ....+.-+..+|+|||.+++-.+ ....+.++..+..
T Consensus 113 DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~ 174 (205)
T COG0293 113 DVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRR 174 (205)
T ss_pred ceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHH
Confidence 9999876542111 11111111 13445667789999999999874 4455666666653
No 230
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.25 E-value=1.6e-05 Score=63.70 Aligned_cols=103 Identities=17% Similarity=0.253 Sum_probs=74.4
Q ss_pred ccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc----CCCccEE
Q 023703 96 KYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLV 169 (278)
Q Consensus 96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~----~~~fD~v 169 (278)
.+.++.+||-+|..+|....+++.- | ...|+++++|+...+..-..++.. +|+--+..|+..+.. -+..|+|
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~P~~Y~~lv~~VDvI 147 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARHPEKYRMLVEMVDVI 147 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTSGGGGTTTS--EEEE
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCChHHhhcccccccEE
Confidence 3478899999999999999998886 3 237999999997766665555554 588889999987532 3578888
Q ss_pred EeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 170 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
+++-. .+.+...++.++...||+||.+++..
T Consensus 148 ~~DVa---------Qp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 148 FQDVA---------QPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp EEE-S---------STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EecCC---------ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 87311 23466667789999999999999863
No 231
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.24 E-value=9.3e-06 Score=69.22 Aligned_cols=102 Identities=15% Similarity=0.264 Sum_probs=82.2
Q ss_pred CCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccceec
Q 023703 100 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIG 179 (278)
Q Consensus 100 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~ 179 (278)
-...+|+|.|.|+.+..+... +.+|-++++....+-.++..+. . .|+.+-+|++...|. -|+|+..-+++++.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~---gV~~v~gdmfq~~P~--~daI~mkWiLhdwt 250 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-P---GVEHVAGDMFQDTPK--GDAIWMKWILHDWT 250 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-C---CcceecccccccCCC--cCeEEEEeecccCC
Confidence 368999999999999999995 6689999999888877777664 3 377888998876433 35999876666554
Q ss_pred cCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703 180 LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 213 (278)
Q Consensus 180 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 213 (278)
.++-.++|+++++.|+|||.+++.+...+
T Consensus 251 -----DedcvkiLknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 251 -----DEDCVKILKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred -----hHHHHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 67889999999999999999999876433
No 232
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=1.8e-05 Score=64.92 Aligned_cols=102 Identities=17% Similarity=0.190 Sum_probs=76.9
Q ss_pred hhhccccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCcc---CC
Q 023703 91 VEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL---ER 164 (278)
Q Consensus 91 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~---~~ 164 (278)
+-......||.+||+-|+|+|.++..+++. + -.+++..|+...-.+.|.+-++..+++ ++++.+-|+....+ +.
T Consensus 97 I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~ 176 (314)
T KOG2915|consen 97 ILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSL 176 (314)
T ss_pred HHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcccccc
Confidence 333456689999999999999999999887 2 238999999999999999999999885 49999999987543 35
Q ss_pred CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcE
Q 023703 165 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGL 204 (278)
Q Consensus 165 ~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 204 (278)
.+|.|+.+-+ .+... +-.+.++||.+|.
T Consensus 177 ~aDaVFLDlP---------aPw~A---iPha~~~lk~~g~ 204 (314)
T KOG2915|consen 177 KADAVFLDLP---------APWEA---IPHAAKILKDEGG 204 (314)
T ss_pred ccceEEEcCC---------Chhhh---hhhhHHHhhhcCc
Confidence 6777775433 22222 2456667887774
No 233
>PRK10742 putative methyltransferase; Provisional
Probab=98.23 E-value=5.4e-06 Score=67.92 Aligned_cols=84 Identities=14% Similarity=0.107 Sum_probs=68.1
Q ss_pred hccccCCCC--eEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC------CC---cceEEEEccccCCc
Q 023703 93 ENDKYLSSW--SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD------GF---SCIKFLVDDVLDTK 161 (278)
Q Consensus 93 ~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~------~~---~~~~~~~~d~~~~~ 161 (278)
...+++++. +|||+.+|+|..+..++..|+ +|+++|-++.+....+.+++.. +. .+++++++|..++-
T Consensus 80 kAvglk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L 158 (250)
T PRK10742 80 KAVGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTAL 158 (250)
T ss_pred HHhCCCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHH
Confidence 334445555 899999999999999999997 5999999999999999988874 21 45888999987753
Q ss_pred --cCCCccEEEeCCccce
Q 023703 162 --LERQFQLVMDKGTLDA 177 (278)
Q Consensus 162 --~~~~fD~v~~~~~~~~ 177 (278)
....||+|+..++|.+
T Consensus 159 ~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 159 TDITPRPQVVYLDPMFPH 176 (250)
T ss_pred hhCCCCCcEEEECCCCCC
Confidence 2357999999998865
No 234
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=98.22 E-value=1.7e-05 Score=72.45 Aligned_cols=126 Identities=18% Similarity=0.209 Sum_probs=88.0
Q ss_pred cccchhhhccccCCCCeEEEEecCCCHHHHHHhhC-C----CCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccC
Q 023703 86 LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G----FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLD 159 (278)
Q Consensus 86 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~----~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~ 159 (278)
....++..+.. .+..+|.|..||+|.+....... + ...++|.|+++.....|+.++-.+|+. ++....+|-..
T Consensus 174 v~~liv~~l~~-~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~ 252 (489)
T COG0286 174 VSELIVELLDP-EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLS 252 (489)
T ss_pred HHHHHHHHcCC-CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccccccccc
Confidence 33334444443 56679999999999887776654 1 136999999999999999999988875 35666776655
Q ss_pred Ccc------CCCccEEEeCCccceecc------------------CCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703 160 TKL------ERQFQLVMDKGTLDAIGL------------------HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 212 (278)
Q Consensus 160 ~~~------~~~fD~v~~~~~~~~~~~------------------~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 212 (278)
.+. .++||.|++++++..... .+.....-..+++.+...|+|||+..++.++.
T Consensus 253 ~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~g 329 (489)
T COG0286 253 NPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDG 329 (489)
T ss_pred CCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCC
Confidence 432 267999999999951110 11222232678899999999998776654433
No 235
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.21 E-value=1.9e-07 Score=73.27 Aligned_cols=94 Identities=16% Similarity=0.324 Sum_probs=71.3
Q ss_pred CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCcccee
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAI 178 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~ 178 (278)
.+.++||+|+|.|.++..++.. +.+|++++.|..|....++.- .+-+..+++.+. +-+||+|.|...+|..
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk~-ynVl~~~ew~~t-------~~k~dli~clNlLDRc 182 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKKN-YNVLTEIEWLQT-------DVKLDLILCLNLLDRC 182 (288)
T ss_pred CCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhcC-Cceeeehhhhhc-------CceeehHHHHHHHHhh
Confidence 4579999999999999999998 678999999999998887631 000011222222 3358999998888766
Q ss_pred ccCCCChhhHHHHHHHHHhcccC-CcEEEEE
Q 023703 179 GLHPDGPLKRIMYWDSVSKLVAP-GGLLVIT 208 (278)
Q Consensus 179 ~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~ 208 (278)
. +..++++.++.+|+| +|++++.
T Consensus 183 ~-------~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 183 F-------DPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred c-------ChHHHHHHHHHHhccCCCcEEEE
Confidence 5 677888999999999 8988774
No 236
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.21 E-value=1.5e-05 Score=63.14 Aligned_cols=115 Identities=12% Similarity=0.144 Sum_probs=84.4
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC---ccCCCccEEEeCCc
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT---KLERQFQLVMDKGT 174 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~---~~~~~fD~v~~~~~ 174 (278)
.+|.+||++|-|.|.....+.+....+-+.++..|..++..+...-... .++.+..+-..+. .+++.||-|+-..
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek-~nViil~g~WeDvl~~L~d~~FDGI~yDT- 177 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK-ENVIILEGRWEDVLNTLPDKHFDGIYYDT- 177 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc-cceEEEecchHhhhccccccCcceeEeec-
Confidence 6788999999999999999988865678889999999999987653332 3566666655553 3467799887431
Q ss_pred cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHH
Q 023703 175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHE 220 (278)
Q Consensus 175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 220 (278)
| . +-.++...+.+.+.++|||+|++-+.....-.+.+...
T Consensus 178 y---~---e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~~~~~~~~~ 217 (271)
T KOG1709|consen 178 Y---S---ELYEDLRHFHQHVVRLLKPEGVFSYFNGLGADNLMFYD 217 (271)
T ss_pred h---h---hHHHHHHHHHHHHhhhcCCCceEEEecCcccchhhhhh
Confidence 1 1 11346677779999999999999887765555554443
No 237
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.18 E-value=2.7e-05 Score=59.56 Aligned_cols=103 Identities=31% Similarity=0.480 Sum_probs=68.9
Q ss_pred EEEEecCCCHHHHHHhhCCC--CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccC--CccC--CCccEEEeCCccc
Q 023703 103 VLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD--TKLE--RQFQLVMDKGTLD 176 (278)
Q Consensus 103 vLDiGcG~G~~~~~l~~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~--~~~~--~~fD~v~~~~~~~ 176 (278)
++|+|||+|... .+..... ..++++|+++.+++.++......+...+.+...|... .+.. ..||++.......
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999965 3333311 3799999999999986555433211116788888776 4444 3799994333322
Q ss_pred eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703 177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK 214 (278)
Q Consensus 177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 214 (278)
+. .....+.++.+.|+|+|.+++.......
T Consensus 131 ~~--------~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 131 LL--------PPAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred cC--------CHHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 21 1456669999999999999998765443
No 238
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.18 E-value=7.2e-06 Score=69.28 Aligned_cols=104 Identities=16% Similarity=0.239 Sum_probs=53.6
Q ss_pred ccccCcccccccccccc---hhhhccccC----CCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhh
Q 023703 73 SISQGHMLNHVEDLKSE---PVEENDKYL----SSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLAN 143 (278)
Q Consensus 73 ~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~ 143 (278)
.+..+.+.|....+... +..++.... ...++||||||...+--.|..+ +. +++|+|+++.+++.|+++.+
T Consensus 69 diP~~~LcP~iP~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~ 147 (299)
T PF05971_consen 69 DIPEGRLCPPIPNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVE 147 (299)
T ss_dssp ---TTS----HHHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHH
T ss_pred cCCCCCcCCCCchhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHH
Confidence 36667777666533222 222222221 2468999999999765444433 65 89999999999999999999
Q ss_pred hC-CCcc-eEEEEccccCC----c--cCCCccEEEeCCccce
Q 023703 144 RD-GFSC-IKFLVDDVLDT----K--LERQFQLVMDKGTLDA 177 (278)
Q Consensus 144 ~~-~~~~-~~~~~~d~~~~----~--~~~~fD~v~~~~~~~~ 177 (278)
.+ ++.+ |+++...-... . ..+.||+.+||++|..
T Consensus 148 ~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmCNPPFy~ 189 (299)
T PF05971_consen 148 RNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTMCNPPFYS 189 (299)
T ss_dssp HT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE-----S
T ss_pred hccccccceEEEEcCCccccchhhhcccceeeEEecCCcccc
Confidence 99 7754 88776532221 1 2468999999999854
No 239
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.18 E-value=7.7e-07 Score=79.04 Aligned_cols=101 Identities=19% Similarity=0.270 Sum_probs=64.0
Q ss_pred CeEEEEecCCCHHHHHHhhCCCCcEEEE---eCChHHHHHHHHHhhhCCCcceEEEEccccCCc-cCCCccEEEeCCccc
Q 023703 101 WSVLDIGTGNGLLLQELSKQGFSDLTGV---DYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-LERQFQLVMDKGTLD 176 (278)
Q Consensus 101 ~~vLDiGcG~G~~~~~l~~~~~~~v~~~---D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~~~ 176 (278)
..+||+|||+|.++..|.+++. .+..+ |..+..++.|-+ .|++-+--..+. ..++ +++.||+|-|.....
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfale----RGvpa~~~~~~s-~rLPfp~~~fDmvHcsrc~i 192 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALE----RGVPAMIGVLGS-QRLPFPSNAFDMVHCSRCLI 192 (506)
T ss_pred EEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhh----cCcchhhhhhcc-ccccCCccchhhhhcccccc
Confidence 4789999999999999999953 22222 334445555544 344322111112 2333 468899999877653
Q ss_pred eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703 177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 213 (278)
Q Consensus 177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 213 (278)
. .+..+ ..++-++-|+|+|||.++++.+...
T Consensus 193 ~--W~~~~----g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 193 P--WHPND----GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred c--chhcc----cceeehhhhhhccCceEEecCCccc
Confidence 2 22222 2356789999999999999876543
No 240
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.16 E-value=7.1e-06 Score=62.30 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=51.2
Q ss_pred eEEEEecCCCHHHHHHhhCCCC-cEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC
Q 023703 102 SVLDIGTGNGLLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 160 (278)
Q Consensus 102 ~vLDiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~ 160 (278)
++||+|||.|..+..++..+.. +++++|+++.+.+.++++++.++++++.+++..+.+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCC
Confidence 4899999999999999988543 7999999999999999999988877788888777653
No 241
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.15 E-value=1.3e-05 Score=67.89 Aligned_cols=109 Identities=23% Similarity=0.201 Sum_probs=70.1
Q ss_pred CCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCccCCCccEEEeCCcc
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKGTL 175 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~fD~v~~~~~~ 175 (278)
.+.+|||+|||+|..+..+.+. ...+++++|.|+.+++.++..+....-.. .........+...-.+.|+|++..++
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~L 112 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYVL 112 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehhh
Confidence 4569999999999876665553 34589999999999999998776442111 11111111111112334999998887
Q ss_pred ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703 176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK 214 (278)
Q Consensus 176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 214 (278)
..+. + .....+++.+.+.+.+ .|+++++..+.
T Consensus 113 ~EL~----~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 113 NELP----S-AARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred hcCC----c-hHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 6664 2 4666777777776666 77777655443
No 242
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.15 E-value=9.3e-06 Score=69.43 Aligned_cols=86 Identities=15% Similarity=0.166 Sum_probs=63.8
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCccc
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD 176 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~~ 176 (278)
.++.++||+||++|.++..+.++|. +|++||..+-. ..+... ++|.....|.....+ .+.+|+++|+.+-
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~-----~~L~~~--~~V~h~~~d~fr~~p~~~~vDwvVcDmve- 280 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMA-----QSLMDT--GQVEHLRADGFKFRPPRKNVDWLVCDMVE- 280 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcC-----HhhhCC--CCEEEEeccCcccCCCCCCCCEEEEeccc-
Confidence 5788999999999999999999986 89999966522 112122 468889999887765 6789999986542
Q ss_pred eeccCCCChhhHHHHHHHHHhcccCC
Q 023703 177 AIGLHPDGPLKRIMYWDSVSKLVAPG 202 (278)
Q Consensus 177 ~~~~~~~~~~~~~~~l~~~~~~Lkpg 202 (278)
.+...++-+.+.|..|
T Consensus 281 ----------~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 281 ----------KPARVAELMAQWLVNG 296 (357)
T ss_pred ----------CHHHHHHHHHHHHhcC
Confidence 3334446677777665
No 243
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.13 E-value=4.9e-05 Score=64.67 Aligned_cols=74 Identities=16% Similarity=0.145 Sum_probs=59.4
Q ss_pred CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc------CCCccEEE
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL------ERQFQLVM 170 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~------~~~fD~v~ 170 (278)
.++..++|.-||.|..+..++.. +..+|+|+|.++.+++.++++++..+ .++.+++++..+... ..++|.|+
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~l~~~~~~~vDgIl 97 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEHLDELLVTKIDGIL 97 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHHHHhcCCCcccEEE
Confidence 56789999999999999999886 33589999999999999999887653 468899988876531 24578777
Q ss_pred eC
Q 023703 171 DK 172 (278)
Q Consensus 171 ~~ 172 (278)
.+
T Consensus 98 ~D 99 (305)
T TIGR00006 98 VD 99 (305)
T ss_pred Ee
Confidence 54
No 244
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.12 E-value=7.7e-06 Score=68.83 Aligned_cols=75 Identities=25% Similarity=0.303 Sum_probs=63.3
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCC----CccEEEeCC
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLER----QFQLVMDKG 173 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~----~fD~v~~~~ 173 (278)
.++..|||+|+|.|.++..|++.+ ++++++|+++..++..++++... ++++++.+|+.++.... ....|++|-
T Consensus 29 ~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~--~~~~vi~~D~l~~~~~~~~~~~~~~vv~Nl 105 (262)
T PF00398_consen 29 SEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASN--PNVEVINGDFLKWDLYDLLKNQPLLVVGNL 105 (262)
T ss_dssp GTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTC--SSEEEEES-TTTSCGGGHCSSSEEEEEEEE
T ss_pred CCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhc--ccceeeecchhccccHHhhcCCceEEEEEe
Confidence 367899999999999999999997 69999999999999999987633 57999999999986543 566888877
Q ss_pred cc
Q 023703 174 TL 175 (278)
Q Consensus 174 ~~ 175 (278)
++
T Consensus 106 Py 107 (262)
T PF00398_consen 106 PY 107 (262)
T ss_dssp TG
T ss_pred cc
Confidence 76
No 245
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.12 E-value=2.3e-06 Score=70.66 Aligned_cols=103 Identities=19% Similarity=0.248 Sum_probs=79.3
Q ss_pred ccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcce-EEEEccccCCcc-CCCccEEEe
Q 023703 94 NDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDDVLDTKL-ERQFQLVMD 171 (278)
Q Consensus 94 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~-~~~~~d~~~~~~-~~~fD~v~~ 171 (278)
+.....+..++|+|||.|..+..- +...++|+|++...+..+++ .+. ....+|+...+. +.+||.+++
T Consensus 40 l~~~~~gsv~~d~gCGngky~~~~---p~~~~ig~D~c~~l~~~ak~-------~~~~~~~~ad~l~~p~~~~s~d~~ls 109 (293)
T KOG1331|consen 40 LDSQPTGSVGLDVGCGNGKYLGVN---PLCLIIGCDLCTGLLGGAKR-------SGGDNVCRADALKLPFREESFDAALS 109 (293)
T ss_pred HhccCCcceeeecccCCcccCcCC---Ccceeeecchhhhhcccccc-------CCCceeehhhhhcCCCCCCccccchh
Confidence 334455789999999998654221 22369999999999988875 233 678899988775 688999999
Q ss_pred CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
..+++|+. .......+++++.++|+|||..++...
T Consensus 110 iavihhls----T~~RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 110 IAVIHHLS----TRERRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred hhhhhhhh----hHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 99988875 344667888999999999999877643
No 246
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=3e-05 Score=62.69 Aligned_cols=97 Identities=19% Similarity=0.175 Sum_probs=73.4
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCcc---CCCccEEEeCC
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKL---ERQFQLVMDKG 173 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~---~~~fD~v~~~~ 173 (278)
.++..+||+|+-||.|+..+.++|+++|+++|..-..+..--++ . ++ +.+...|+....+ .+..|++++.-
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~----d-~rV~~~E~tN~r~l~~~~~~~~~d~~v~Dv 152 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN----D-PRVIVLERTNVRYLTPEDFTEKPDLIVIDV 152 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc----C-CcEEEEecCChhhCCHHHcccCCCeEEEEe
Confidence 57889999999999999999999999999999988766543321 1 34 4556667766543 35778999876
Q ss_pred ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
+|- ....+|..+..+++|+|.++...
T Consensus 153 SFI----------SL~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 153 SFI----------SLKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred ehh----------hHHHHHHHHHHhcCCCceEEEEe
Confidence 653 44566688999999999877754
No 247
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.02 E-value=2.1e-05 Score=59.76 Aligned_cols=74 Identities=23% Similarity=0.404 Sum_probs=55.9
Q ss_pred CCCCeEEEEecCCCHHHHHHhh-----CCCCcEEEEeCChHHHHHHHHHhhhCC--C-cceEEEEccccCCccCCCccEE
Q 023703 98 LSSWSVLDIGTGNGLLLQELSK-----QGFSDLTGVDYSEDAINLAQSLANRDG--F-SCIKFLVDDVLDTKLERQFQLV 169 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~-----~~~~~v~~~D~s~~~i~~a~~~~~~~~--~-~~~~~~~~d~~~~~~~~~fD~v 169 (278)
.+..+|+|+|||.|.++..++. ....+|+++|.++..++.+.++.+..+ . .++.+..++..+.......+++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDIL 103 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeEE
Confidence 5677999999999999999999 533489999999999999999988776 3 3466666666544334445555
Q ss_pred Ee
Q 023703 170 MD 171 (278)
Q Consensus 170 ~~ 171 (278)
+.
T Consensus 104 vg 105 (141)
T PF13679_consen 104 VG 105 (141)
T ss_pred EE
Confidence 54
No 248
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.00 E-value=5.7e-05 Score=63.28 Aligned_cols=107 Identities=27% Similarity=0.378 Sum_probs=64.6
Q ss_pred CCeEEEEecCCCHHHHH-HhhC-C-CCcEEEEeCChHHHHHHHHHhh-hCCCc-ceEEEEccccCCccC-CCccEEEeCC
Q 023703 100 SWSVLDIGTGNGLLLQE-LSKQ-G-FSDLTGVDYSEDAINLAQSLAN-RDGFS-CIKFLVDDVLDTKLE-RQFQLVMDKG 173 (278)
Q Consensus 100 ~~~vLDiGcG~G~~~~~-l~~~-~-~~~v~~~D~s~~~i~~a~~~~~-~~~~~-~~~~~~~d~~~~~~~-~~fD~v~~~~ 173 (278)
+.+|+=||||.=-++.. +++. + ...|+++|+++.+++.+++... ..++. ++.|+.+|..+...+ ..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 46999999998766554 4433 3 2479999999999999998877 33443 599999999876543 6899998654
Q ss_pred ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703 174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 212 (278)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 212 (278)
... ...+....++.++.+.++||..+++-+.+.
T Consensus 201 lVg------~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~G 233 (276)
T PF03059_consen 201 LVG------MDAEPKEEILEHLAKHMAPGARLVVRSAHG 233 (276)
T ss_dssp T-S----------SHHHHHHHHHHHS-TTSEEEEEE--G
T ss_pred hcc------cccchHHHHHHHHHhhCCCCcEEEEecchh
Confidence 321 112355678899999999999999985543
No 249
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.99 E-value=1e-05 Score=68.39 Aligned_cols=120 Identities=18% Similarity=0.103 Sum_probs=89.0
Q ss_pred hhhhccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHH-------HHHHHhhhCCCcc--eEEEEccccCC
Q 023703 90 PVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAIN-------LAQSLANRDGFSC--IKFLVDDVLDT 160 (278)
Q Consensus 90 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~-------~a~~~~~~~~~~~--~~~~~~d~~~~ 160 (278)
+........+|.-|.|...|||.+....+..|. -|+|.||+-.++. ..+.|+++.|... +.+..+|....
T Consensus 199 i~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~ 277 (421)
T KOG2671|consen 199 IMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNP 277 (421)
T ss_pred HHhhhhccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCc
Confidence 344445668999999999999999999999985 8999999988877 3467888887543 77888998876
Q ss_pred cc--CCCccEEEeCCccceec--------------------cCCCCh------hhHHHHHHHHHhcccCCcEEEEEec
Q 023703 161 KL--ERQFQLVMDKGTLDAIG--------------------LHPDGP------LKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 161 ~~--~~~fD~v~~~~~~~~~~--------------------~~~~~~------~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
+. ...||.|+|.+++..=. .|.+.. .-...++.-..+.|..||++++--+
T Consensus 278 ~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 278 PLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred chhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 54 57899999999884110 011111 1113555778899999999998765
No 250
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.99 E-value=2.7e-05 Score=62.20 Aligned_cols=91 Identities=20% Similarity=0.282 Sum_probs=68.3
Q ss_pred CeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc----CCCccEEEeCCccc
Q 023703 101 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLVMDKGTLD 176 (278)
Q Consensus 101 ~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~----~~~fD~v~~~~~~~ 176 (278)
.++|||||=+......- .+.-.|+.||+++. .-.+.+.|+.+.+. .++||+|.+.-+++
T Consensus 53 lrlLEVGals~~N~~s~--~~~fdvt~IDLns~---------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLN 115 (219)
T PF11968_consen 53 LRLLEVGALSTDNACST--SGWFDVTRIDLNSQ---------------HPGILQQDFMERPLPKNESEKFDVISLSLVLN 115 (219)
T ss_pred ceEEeecccCCCCcccc--cCceeeEEeecCCC---------------CCCceeeccccCCCCCCcccceeEEEEEEEEe
Confidence 69999999765544332 23236999999763 23456788877643 47899999988887
Q ss_pred eeccCCCChhhHHHHHHHHHhcccCCcE-----EEEEecCC
Q 023703 177 AIGLHPDGPLKRIMYWDSVSKLVAPGGL-----LVITSCNS 212 (278)
Q Consensus 177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~-----l~~~~~~~ 212 (278)
.++ ++..+-.++.++.+.|+|+|. ++++.+.+
T Consensus 116 fVP----~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~ 152 (219)
T PF11968_consen 116 FVP----DPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP 152 (219)
T ss_pred eCC----CHHHHHHHHHHHHHHhCCCCccCcceEEEEeCch
Confidence 764 566888999999999999999 88886544
No 251
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.94 E-value=0.0001 Score=57.96 Aligned_cols=102 Identities=18% Similarity=0.288 Sum_probs=77.9
Q ss_pred ccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc----cCCCccEEE
Q 023703 96 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLVM 170 (278)
Q Consensus 96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~----~~~~fD~v~ 170 (278)
.+.++.+||-+|+.+|....+++.- |...++++++|+......-..++.. +|+--+..|+..+. .-+..|+|+
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R--~Ni~PIL~DA~~P~~Y~~~Ve~VDviy 150 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR--PNIIPILEDARKPEKYRHLVEKVDVIY 150 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC--CCceeeecccCCcHHhhhhcccccEEE
Confidence 3478999999999999999999887 4347999999998777666655554 57888999998753 135577777
Q ss_pred eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703 171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 208 (278)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 208 (278)
.. -..+.+..-+..++...||+||.+++.
T Consensus 151 ~D---------VAQp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 151 QD---------VAQPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred Ee---------cCCchHHHHHHHHHHHhcccCCeEEEE
Confidence 53 223446666779999999999977775
No 252
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.87 E-value=0.00064 Score=55.40 Aligned_cols=101 Identities=16% Similarity=0.173 Sum_probs=63.6
Q ss_pred CCCCeEEEEecCCCHHHHHHhh-CCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc---CCCccEEEeCC
Q 023703 98 LSSWSVLDIGTGNGLLLQELSK-QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---ERQFQLVMDKG 173 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~---~~~fD~v~~~~ 173 (278)
..|++||-+|=..-. ++.++. ...++|+.+|+++..++..++.++..|++ ++.++.|+...-+ .++||+++.++
T Consensus 43 L~gk~il~lGDDDLt-SlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~~~~~~fD~f~TDP 120 (243)
T PF01861_consen 43 LEGKRILFLGDDDLT-SLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPEELRGKFDVFFTDP 120 (243)
T ss_dssp STT-EEEEES-TT-H-HHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TTTSS-BSEEEE--
T ss_pred ccCCEEEEEcCCcHH-HHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCHHHhcCCCEEEeCC
Confidence 578899999855542 333332 33469999999999999999999999985 9999999998643 48999999988
Q ss_pred ccceeccCCCChhhHHHHHHHHHhcccCCc-EEEEE
Q 023703 174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGG-LLVIT 208 (278)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG-~l~~~ 208 (278)
++- ......++.+....||..| ..++.
T Consensus 121 PyT--------~~G~~LFlsRgi~~Lk~~g~~gy~~ 148 (243)
T PF01861_consen 121 PYT--------PEGLKLFLSRGIEALKGEGCAGYFG 148 (243)
T ss_dssp -SS--------HHHHHHHHHHHHHTB-STT-EEEEE
T ss_pred CCC--------HHHHHHHHHHHHHHhCCCCceEEEE
Confidence 763 3467788899999999777 44443
No 253
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.85 E-value=3.9e-05 Score=67.59 Aligned_cols=100 Identities=24% Similarity=0.307 Sum_probs=74.1
Q ss_pred CCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcc--eEEEEccccCCc--cCCCccEEEeC
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSC--IKFLVDDVLDTK--LERQFQLVMDK 172 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~--~~~~~~d~~~~~--~~~~fD~v~~~ 172 (278)
.+.+|||.-+|+|.=++..+.. +..+|+.-|+|+.+++..++|++.++++. +++.+.|+...- ....||+|=.+
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 4468999999999888777776 45689999999999999999999999875 788888987654 46778876432
Q ss_pred CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
+| + ....++..+.+.++.||.+.++.
T Consensus 129 -Pf--------G--Sp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 129 -PF--------G--SPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp --S--------S----HHHHHHHHHHEEEEEEEEEEE
T ss_pred -CC--------C--CccHhHHHHHHHhhcCCEEEEec
Confidence 22 2 55677899999999999999973
No 254
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.82 E-value=7.5e-05 Score=61.13 Aligned_cols=82 Identities=20% Similarity=0.161 Sum_probs=63.0
Q ss_pred ccCCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCc
Q 023703 96 KYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGT 174 (278)
Q Consensus 96 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~ 174 (278)
...++.+|+|||||.--++..+.... ...++|+|++..+++....-+...+. +.++...|+....+....|+.+..-+
T Consensus 102 ~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-~~~~~v~Dl~~~~~~~~~DlaLllK~ 180 (251)
T PF07091_consen 102 RIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-PHDARVRDLLSDPPKEPADLALLLKT 180 (251)
T ss_dssp CS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-TTTSHTTSEESEEEEET-
T ss_pred cCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-CcceeEeeeeccCCCCCcchhhHHHH
Confidence 33457899999999999999877763 34899999999999999999888874 68888889988878888999998776
Q ss_pred ccee
Q 023703 175 LDAI 178 (278)
Q Consensus 175 ~~~~ 178 (278)
+..+
T Consensus 181 lp~l 184 (251)
T PF07091_consen 181 LPCL 184 (251)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 255
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=6.8e-05 Score=64.39 Aligned_cols=98 Identities=21% Similarity=0.260 Sum_probs=75.3
Q ss_pred CCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc--CCCccEEEeCCccc
Q 023703 100 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDKGTLD 176 (278)
Q Consensus 100 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~v~~~~~~~ 176 (278)
+.+|||.-||+|.=++..+.. +..+|+.-|+||.+++.+++|+..+...+...++.|+...-. ...||+|=
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~ID------ 126 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVID------ 126 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEe------
Confidence 679999999999988888877 444899999999999999999999844566677777765433 25666552
Q ss_pred eeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703 177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 208 (278)
Q Consensus 177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 208 (278)
++|.+ ....|+..+.+.++.||++.++
T Consensus 127 ---iDPFG--SPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 127 ---IDPFG--SPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred ---cCCCC--CCchHHHHHHHHhhcCCEEEEE
Confidence 23322 4455678899999999999886
No 256
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.81 E-value=0.00014 Score=56.87 Aligned_cols=115 Identities=14% Similarity=0.164 Sum_probs=75.1
Q ss_pred cccCCCCeEEEEecCCCHHHHHHhhC-CC-CcEEEEeCChHH----HH--HHHHHhhhCCCcceEEEEccccCCccCCCc
Q 023703 95 DKYLSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDA----IN--LAQSLANRDGFSCIKFLVDDVLDTKLERQF 166 (278)
Q Consensus 95 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~~-~~v~~~D~s~~~----i~--~a~~~~~~~~~~~~~~~~~d~~~~~~~~~f 166 (278)
.+++++.+|+|+-.|.|.++..++.. |. ..|++.-..+.. .+ ..+.........|++.+..+...+.+.+..
T Consensus 44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~ 123 (238)
T COG4798 44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKL 123 (238)
T ss_pred eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcc
Confidence 45578999999999999999999886 32 156665443331 11 111111122334566666666666566778
Q ss_pred cEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 167 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 167 D~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
|+++.+..++.+..-...+.....+...+.+.|||||.+++.+
T Consensus 124 d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 124 DLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred cccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence 8888776665554322334455666799999999999999875
No 257
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.80 E-value=1.4e-05 Score=57.48 Aligned_cols=97 Identities=25% Similarity=0.322 Sum_probs=42.2
Q ss_pred EEEecCCCHHHHHHhhC----CCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCc--c-CCCccEEEeCCcc
Q 023703 104 LDIGTGNGLLLQELSKQ----GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK--L-ERQFQLVMDKGTL 175 (278)
Q Consensus 104 LDiGcG~G~~~~~l~~~----~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~--~-~~~fD~v~~~~~~ 175 (278)
||+|+..|..+..+++. +..+++++|..+. .+.+++.++..++ .+++++.++..+.. . .++||+++..+.-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDH 79 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCC
Confidence 68999999988887764 1127999999995 2333333333333 35999999987642 2 3789999876531
Q ss_pred ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
- .......++.+.+.|+|||++++-+
T Consensus 80 --~------~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 --S------YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ---------HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred --C------HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 1 1255566788999999999998754
No 258
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=0.0011 Score=57.01 Aligned_cols=127 Identities=14% Similarity=0.017 Sum_probs=85.1
Q ss_pred hccccCCCCeEEEEecCCCHHHHHHhhCCC---C--cEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc------
Q 023703 93 ENDKYLSSWSVLDIGTGNGLLLQELSKQGF---S--DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------ 161 (278)
Q Consensus 93 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~--~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~------ 161 (278)
++....|+.+|||+++..|.=+..+.+..+ . .|++-|.++.-+...+...+....+++.+...|+...+
T Consensus 149 L~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~ 228 (375)
T KOG2198|consen 149 LALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKD 228 (375)
T ss_pred hhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceecccccccc
Confidence 345668999999999999988877766521 1 69999999998888887776655445555555554432
Q ss_pred ----cCCCccEEEeCCccce--eccCC--------------CChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHH
Q 023703 162 ----LERQFQLVMDKGTLDA--IGLHP--------------DGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH 219 (278)
Q Consensus 162 ----~~~~fD~v~~~~~~~~--~~~~~--------------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 219 (278)
....||-|++.-+-.. ..-+. .=+.-...++.+..++||+||.++.++|+-+..+...
T Consensus 229 ~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEa 306 (375)
T KOG2198|consen 229 GNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEA 306 (375)
T ss_pred CchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHH
Confidence 1246888887532210 00000 0112335778999999999999999998776654443
No 259
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.75 E-value=0.0003 Score=52.63 Aligned_cols=89 Identities=13% Similarity=0.205 Sum_probs=61.2
Q ss_pred cEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCcc--C-CCccEEEeCCccceeccCC----CChhhHHHHHHHH
Q 023703 124 DLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKL--E-RQFQLVMDKGTLDAIGLHP----DGPLKRIMYWDSV 195 (278)
Q Consensus 124 ~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~--~-~~fD~v~~~~~~~~~~~~~----~~~~~~~~~l~~~ 195 (278)
+|+|+|+-+.+++.++++++..++.+ +++++.+-..+.. + +++|+++-|--+ ++-.. -.+......++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGY--LPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGY--LPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB---CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCc--CCCCCCCCCcCcHHHHHHHHHH
Confidence 58999999999999999999988754 9999988777642 3 489988876332 22111 1234567888999
Q ss_pred HhcccCCcEEEEEecCCCh
Q 023703 196 SKLVAPGGLLVITSCNSTK 214 (278)
Q Consensus 196 ~~~LkpgG~l~~~~~~~~~ 214 (278)
.+.|+|||++.++......
T Consensus 79 l~lL~~gG~i~iv~Y~GH~ 97 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHP 97 (140)
T ss_dssp HHHEEEEEEEEEEE--STC
T ss_pred HHhhccCCEEEEEEeCCCC
Confidence 9999999999998765444
No 260
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.74 E-value=0.00088 Score=56.25 Aligned_cols=73 Identities=12% Similarity=0.104 Sum_probs=58.3
Q ss_pred cCCCCeEEEEecCCCHHHHHHhhCC--CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc------CCCccE
Q 023703 97 YLSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL------ERQFQL 168 (278)
Q Consensus 97 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~------~~~fD~ 168 (278)
..+++..+|.--|.|..+..+.... ..+++|+|.++.+++.|++++...+ +++.+++.+..+... .+++|-
T Consensus 21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~~l~~~~i~~vDG 99 (314)
T COG0275 21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAEALKELGIGKVDG 99 (314)
T ss_pred cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHHHHHhcCCCceeE
Confidence 3567899999999999999999883 2479999999999999999998766 578999887765421 245665
Q ss_pred EE
Q 023703 169 VM 170 (278)
Q Consensus 169 v~ 170 (278)
|+
T Consensus 100 iL 101 (314)
T COG0275 100 IL 101 (314)
T ss_pred EE
Confidence 55
No 261
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.68 E-value=0.00064 Score=52.93 Aligned_cols=109 Identities=20% Similarity=0.214 Sum_probs=69.1
Q ss_pred CCCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEc-cccCCc---------cCCC
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD-DVLDTK---------LERQ 165 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~-d~~~~~---------~~~~ 165 (278)
.|+.+|||+||..|.++....++ +...|.|+|+-.- .....+.++++ |+.+.. +..+
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~ 136 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPPEGATIIQGNDVTDPETYRKIFEALPNRP 136 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCCCCcccccccccCCHHHHHHHHHhCCCCc
Confidence 57899999999999999988887 2347999998322 11234566666 776642 3467
Q ss_pred ccEEEeCCccceeccCCCChhhHH----HHHHHHHhcccCCcEEEEEecCCChHHH
Q 023703 166 FQLVMDKGTLDAIGLHPDGPLKRI----MYWDSVSKLVAPGGLLVITSCNSTKDEL 217 (278)
Q Consensus 166 fD~v~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 217 (278)
.|+|++...-..-.....+..... ..+.-....++|+|.+++-......+..
T Consensus 137 VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~ 192 (232)
T KOG4589|consen 137 VDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEAL 192 (232)
T ss_pred ccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHH
Confidence 999998755433222111111221 2223345667899999998866555433
No 262
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.67 E-value=0.00024 Score=55.95 Aligned_cols=124 Identities=12% Similarity=0.143 Sum_probs=75.0
Q ss_pred CCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCC-------CcceEEEEccccCCccC--CC---
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG-------FSCIKFLVDDVLDTKLE--RQ--- 165 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~-------~~~~~~~~~d~~~~~~~--~~--- 165 (278)
+...+.|||||-|.+...|+.. +..-++|.+|--...+..+.+..... +.|+.+...+.....+. .+
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 3457999999999999999998 44579999998888888888776554 45677777776654321 11
Q ss_pred ccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe-cCCChHHHHHHHh
Q 023703 166 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS-CNSTKDELVHEVS 222 (278)
Q Consensus 166 fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~~~~~~~ 222 (278)
.-..++.+.-+.-.-......-...++.+..=+|++||.++..+ .-...+.+...++
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~e 197 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVKELHEWMVKHLE 197 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHHH
Confidence 11111111110000000111122356688888999999998775 3334444444444
No 263
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.62 E-value=0.00037 Score=57.89 Aligned_cols=109 Identities=17% Similarity=0.185 Sum_probs=67.7
Q ss_pred CeEEEEecCCC--HHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-------CCCcc--
Q 023703 101 WSVLDIGTGNG--LLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-------ERQFQ-- 167 (278)
Q Consensus 101 ~~vLDiGcG~G--~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-------~~~fD-- 167 (278)
.-.||||||-= ...-.+++. +.++|+-+|.+|..+..++..+....-....++++|+.+... .+-+|
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~ 149 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD 149 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence 36999999954 344455554 446999999999999999998876632238899999988531 12233
Q ss_pred ---EEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703 168 ---LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 213 (278)
Q Consensus 168 ---~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 213 (278)
.++..++++++. +..+...+++.++..|.||..|+++.....
T Consensus 150 rPVavll~~vLh~v~----D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 150 RPVAVLLVAVLHFVP----DDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp S--EEEECT-GGGS-----CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CCeeeeeeeeeccCC----CccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 456667776663 234667788999999999999999976554
No 264
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.58 E-value=0.00063 Score=54.15 Aligned_cols=110 Identities=17% Similarity=0.218 Sum_probs=68.2
Q ss_pred CCCeEEEEecCCCHHHHHHhhC---CCCcEEEEeCChHHHHHHHHHhhh-------------------------------
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANR------------------------------- 144 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~~D~s~~~i~~a~~~~~~------------------------------- 144 (278)
.+.++.|.+||+|.+...+.-. ....|+|.|+++.+++.|++|+..
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 4568999999999887765543 235899999999999999988721
Q ss_pred ----------C-CCcceEEEEccccCCcc------CCCccEEEeCCccceeccCCCC---hhhHHHHHHHHHhcccCCcE
Q 023703 145 ----------D-GFSCIKFLVDDVLDTKL------ERQFQLVMDKGTLDAIGLHPDG---PLKRIMYWDSVSKLVAPGGL 204 (278)
Q Consensus 145 ----------~-~~~~~~~~~~d~~~~~~------~~~fD~v~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~LkpgG~ 204 (278)
. +.....+.+.|+++... ....|+|+..-++..+. ++.+ ......++..+..+|.++++
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t-~W~g~~~~~p~~~ml~~l~~vLp~~sV 209 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMT-SWQGEGSGGPVAQMLNSLAPVLPERSV 209 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSS-STTS---HHHHHHHHHHHHCCS-TT-E
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccc-cccCCCCCCcHHHHHHHHHhhCCCCcE
Confidence 1 22246788999988532 33469999988886664 3222 34556888999999965566
Q ss_pred EEEEe
Q 023703 205 LVITS 209 (278)
Q Consensus 205 l~~~~ 209 (278)
+.++.
T Consensus 210 V~v~~ 214 (246)
T PF11599_consen 210 VAVSD 214 (246)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 65543
No 265
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.57 E-value=0.00011 Score=59.04 Aligned_cols=104 Identities=13% Similarity=0.240 Sum_probs=69.2
Q ss_pred cccCccccccccc---ccchhhhcc---c--cCCCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhh
Q 023703 74 ISQGHMLNHVEDL---KSEPVEEND---K--YLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLAN 143 (278)
Q Consensus 74 ~~~~~~~~~~~~~---~~~~~~~~~---~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~ 143 (278)
+..+.+.|....+ ...+..++. . ..++.++||||.|...+--.+-.+ |. +.+|.|+++.+++.|+.+..
T Consensus 45 iPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~ 123 (292)
T COG3129 45 IPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIIS 123 (292)
T ss_pred CCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHH
Confidence 5566665555432 222333321 1 135678999999988765555444 65 89999999999999999998
Q ss_pred hC-CCcc-eEEEEccccCCc------cCCCccEEEeCCcccee
Q 023703 144 RD-GFSC-IKFLVDDVLDTK------LERQFQLVMDKGTLDAI 178 (278)
Q Consensus 144 ~~-~~~~-~~~~~~d~~~~~------~~~~fD~v~~~~~~~~~ 178 (278)
.+ ++.+ ++++...-.+.. ..+.||+..||++|+.-
T Consensus 124 ~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 124 ANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred cCcchhhheeEEeccCccccccccccccceeeeEecCCCcchh
Confidence 87 5543 666554333321 24789999999999643
No 266
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.56 E-value=0.0022 Score=51.47 Aligned_cols=115 Identities=18% Similarity=0.141 Sum_probs=84.0
Q ss_pred CCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCc-cCCCccEEEeCCcc
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTK-LERQFQLVMDKGTL 175 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~-~~~~fD~v~~~~~~ 175 (278)
.+.++.||||-.+.+...+...+ +..+++.|+++..++.|.+++..+++.. ++...+|....- .+..+|+++-.+.
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM- 94 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM- 94 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC-
Confidence 45569999999999999999984 5689999999999999999999988754 888889986543 3457888775432
Q ss_pred ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhh
Q 023703 176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN 223 (278)
Q Consensus 176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 223 (278)
+-.....++++-.+-|+.--.+++ .|+.....+++.+..
T Consensus 95 --------GG~lI~~ILee~~~~l~~~~rlIL-QPn~~~~~LR~~L~~ 133 (226)
T COG2384 95 --------GGTLIREILEEGKEKLKGVERLIL-QPNIHTYELREWLSA 133 (226)
T ss_pred --------cHHHHHHHHHHhhhhhcCcceEEE-CCCCCHHHHHHHHHh
Confidence 122445666777777665434444 466666666666553
No 267
>PHA01634 hypothetical protein
Probab=97.50 E-value=0.0006 Score=49.57 Aligned_cols=48 Identities=10% Similarity=-0.020 Sum_probs=44.6
Q ss_pred CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCC
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG 146 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~ 146 (278)
.+++|+|||.+-|..++.++.+|++.|++++.++...+..+++.+.+.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nn 75 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFN 75 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhe
Confidence 678999999999999999999999999999999999999999887664
No 268
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=97.49 E-value=0.0015 Score=52.88 Aligned_cols=103 Identities=16% Similarity=0.192 Sum_probs=71.2
Q ss_pred ccCCCCeEEEEecCCCHHHHHHhhC-CC-CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc----CCCccEE
Q 023703 96 KYLSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLV 169 (278)
Q Consensus 96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~----~~~fD~v 169 (278)
+++++.+||-+|+++|....++..- |. .-|++++.|+..=...-..+++. +||--+..|+..+.. -.-.|+|
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--tNiiPIiEDArhP~KYRmlVgmVDvI 230 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--TNIIPIIEDARHPAKYRMLVGMVDVI 230 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--CCceeeeccCCCchheeeeeeeEEEE
Confidence 3589999999999999988888876 32 26999999986655444443333 577778888876421 1344555
Q ss_pred EeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 170 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
++ +-..+.+...+.-++.-.||+||-++++.
T Consensus 231 Fa---------Dvaqpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 231 FA---------DVAQPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred ec---------cCCCchhhhhhhhhhhhhhccCCeEEEEE
Confidence 54 22333444445567888999999999974
No 269
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=97.34 E-value=0.0029 Score=52.94 Aligned_cols=130 Identities=18% Similarity=0.267 Sum_probs=94.9
Q ss_pred cCCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhC--CC--cceEEEEccccCCc---cCCCccE
Q 023703 97 YLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRD--GF--SCIKFLVDDVLDTK---LERQFQL 168 (278)
Q Consensus 97 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~--~~--~~~~~~~~d~~~~~---~~~~fD~ 168 (278)
...+++||-||-|.|......+.+. ..++.-+|++...++..++.+... |. +++.+.-+|...+- ..++||+
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 3456799999999999999998883 348999999999999998876543 22 45888899887642 2688999
Q ss_pred EEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe-cCCChHHHHHHHhhhhhccc
Q 023703 169 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS-CNSTKDELVHEVSNLSQRRI 229 (278)
Q Consensus 169 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~~~~~~~~~~~~~~ 229 (278)
|+....= - ..+....-...+++.+.+.||+||+++... +-+-...+.+...+++...+
T Consensus 199 ii~dssd-p--vgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~r~~~~~~f 257 (337)
T KOG1562|consen 199 IITDSSD-P--VGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKEGRSFCYVIF 257 (337)
T ss_pred EEEecCC-c--cchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHHHHHHHHhHHHhc
Confidence 9864220 0 011112234577789999999999988864 66677777777777775544
No 270
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.00021 Score=54.24 Aligned_cols=118 Identities=15% Similarity=0.167 Sum_probs=76.1
Q ss_pred CCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCC---cceEEEEccccCCc---cCCCccEEE
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGF---SCIKFLVDDVLDTK---LERQFQLVM 170 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~---~~~~~~~~d~~~~~---~~~~fD~v~ 170 (278)
.+.+||++|.|--.++-.+... ....|..+|-++.+++..++....+.. ..+.....+..... ...+||+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 5679999999976665555444 345899999999999998887655421 22222222222211 235899999
Q ss_pred eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC--ChHHHHHHHhh
Q 023703 171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS--TKDELVHEVSN 223 (278)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~~ 223 (278)
+...+- + .+....+.+.++..|+|.|..++.++-. +.+.+...+..
T Consensus 109 aADClF-f------dE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~ 156 (201)
T KOG3201|consen 109 AADCLF-F------DEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGT 156 (201)
T ss_pred eccchh-H------HHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHh
Confidence 865431 1 2355667799999999999988876533 33444444443
No 271
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.29 E-value=0.00076 Score=56.70 Aligned_cols=101 Identities=21% Similarity=0.285 Sum_probs=63.9
Q ss_pred CCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc-------------------------------
Q 023703 100 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS------------------------------- 148 (278)
Q Consensus 100 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~------------------------------- 148 (278)
..+||-.|||.|+++..++..|+ .+-|-++|--|+=...-.+..-..+
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 45899999999999999999987 5777788776653332222100000
Q ss_pred ---------ceEEEEccccCCcc----CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703 149 ---------CIKFLVDDVLDTKL----ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 208 (278)
Q Consensus 149 ---------~~~~~~~d~~~~~~----~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 208 (278)
+...-.+|..+... .+.||+|+..--+ +.......+++.+..+|||||..+=.
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFI-------DTa~NileYi~tI~~iLk~GGvWiNl 295 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFI-------DTAHNILEYIDTIYKILKPGGVWINL 295 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEe-------echHHHHHHHHHHHHhccCCcEEEec
Confidence 11112234433221 1357777754222 23457889999999999999987754
No 272
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.0015 Score=48.90 Aligned_cols=105 Identities=14% Similarity=0.232 Sum_probs=73.5
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCccC-CCccEEEeCCcc
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLE-RQFQLVMDKGTL 175 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~~-~~fD~v~~~~~~ 175 (278)
.+..+.+|+|+|.|++....+++|....+|++++|-.+..++-+.-..|+. ...|..-|+.+.... -.+-+|+....
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviFgaes- 149 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIFGAES- 149 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEeehHH-
Confidence 455689999999999999999998668999999999999998887777764 478888888775542 22223332211
Q ss_pred ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703 176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK 214 (278)
Q Consensus 176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 214 (278)
.+. +.. .++..-+..+..++.+-+.-+.
T Consensus 150 -~m~-------dLe---~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 150 -VMP-------DLE---DKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred -HHh-------hhH---HHHHhhCcCCCeEEEEecCCCc
Confidence 111 111 4566567778888877655443
No 273
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.22 E-value=0.00081 Score=57.32 Aligned_cols=75 Identities=12% Similarity=0.092 Sum_probs=53.9
Q ss_pred cCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-------CCCccE
Q 023703 97 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-------ERQFQL 168 (278)
Q Consensus 97 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-------~~~fD~ 168 (278)
..++..++|.--|.|..+..+++. +..+++|+|.++.+++.+++++.... +++.+++++..+... ..++|.
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~-~r~~~~~~~F~~l~~~l~~~~~~~~~dg 96 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFD-DRFIFIHGNFSNLDEYLKELNGINKVDG 96 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCC-TTEEEEES-GGGHHHHHHHTTTTS-EEE
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhcc-ceEEEEeccHHHHHHHHHHccCCCccCE
Confidence 456779999999999999999987 33699999999999999998887553 468999998876531 246777
Q ss_pred EEeC
Q 023703 169 VMDK 172 (278)
Q Consensus 169 v~~~ 172 (278)
|+..
T Consensus 97 iL~D 100 (310)
T PF01795_consen 97 ILFD 100 (310)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 7743
No 274
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=97.21 E-value=0.00017 Score=60.16 Aligned_cols=96 Identities=16% Similarity=0.161 Sum_probs=70.7
Q ss_pred CCCCeEEEEecCCCHHHH-HHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCccCCCccEEEeCCcc
Q 023703 98 LSSWSVLDIGTGNGLLLQ-ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKGTL 175 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~-~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~fD~v~~~~~~ 175 (278)
..+..|.|+-+|-|.++. .+...|++.|.++|.+|.+++..+++++.+++.. ..++.+|-....+....|-|..-
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLG--- 269 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLG--- 269 (351)
T ss_pred cccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeec---
Confidence 456789999999999999 6777788899999999999999999999887643 56677787776666666666531
Q ss_pred ceeccCCCChhhHHHHHHHHHhcccCCcE
Q 023703 176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGL 204 (278)
Q Consensus 176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 204 (278)
+-|... +-+-.+.++|||.|-
T Consensus 270 ----LlPSse----~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 270 ----LLPSSE----QGWPTAIKALKPEGG 290 (351)
T ss_pred ----cccccc----cchHHHHHHhhhcCC
Confidence 112111 222456777887654
No 275
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=97.21 E-value=0.00045 Score=52.46 Aligned_cols=107 Identities=20% Similarity=0.283 Sum_probs=70.8
Q ss_pred CCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcce-EEEEccccCC--ccCCCccEEEeCCccc
Q 023703 100 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDDVLDT--KLERQFQLVMDKGTLD 176 (278)
Q Consensus 100 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~-~~~~~d~~~~--~~~~~fD~v~~~~~~~ 176 (278)
+++++-+|+..=..-....++|+++|..+|.++--++.--+ +++ ++...|.... ...++||.+.+..+++
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~-------dr~ssi~p~df~~~~~~y~~~fD~~as~~siE 74 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFR-------DRLSSILPVDFAKNWQKYAGSFDFAASFSSIE 74 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccc-------cccccccHHHHHHHHHHhhccchhhheechhc
Confidence 46788888887777666777788899999987632221100 111 1222233221 1357899999999999
Q ss_pred eecc----CCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703 177 AIGL----HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 213 (278)
Q Consensus 177 ~~~~----~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 213 (278)
|+.+ +|.++..-...+.++.++|||||.+++..+-.+
T Consensus 75 h~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 75 HFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred cccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 9865 344444445556889999999999999987664
No 276
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.09 E-value=0.0014 Score=55.52 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=56.9
Q ss_pred eEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc---CCCccEEEeCCcccee
Q 023703 102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---ERQFQLVMDKGTLDAI 178 (278)
Q Consensus 102 ~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~---~~~fD~v~~~~~~~~~ 178 (278)
+|+|+.||.|.++..+.+.|+..+.++|+++.+++..+.|+.. . ++.+|+.+... ...+|+++...+...+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-----~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq~f 75 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-----K-LIEGDITKIDEKDFIPDIDLLTGGFPCQPF 75 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-----C-CccCccccCchhhcCCCCCEEEeCCCChhh
Confidence 6999999999999999988887899999999999999888632 1 45677776543 3579999987766544
No 277
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.02 E-value=0.0024 Score=52.18 Aligned_cols=76 Identities=24% Similarity=0.249 Sum_probs=47.5
Q ss_pred CeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhh---hC-CC-----cceEEEEccccCCc--cCCCccEE
Q 023703 101 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN---RD-GF-----SCIKFLVDDVLDTK--LERQFQLV 169 (278)
Q Consensus 101 ~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~---~~-~~-----~~~~~~~~d~~~~~--~~~~fD~v 169 (278)
.+|||.-+|-|.-+..++..|+ +|+++|-||......+.-++ .. .. .+++++++|..+.- .+.+||+|
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV 155 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV 155 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence 4899999999999999998886 89999999987666554332 22 11 36999999998853 36789999
Q ss_pred EeCCccce
Q 023703 170 MDKGTLDA 177 (278)
Q Consensus 170 ~~~~~~~~ 177 (278)
+..+.|.+
T Consensus 156 Y~DPMFp~ 163 (234)
T PF04445_consen 156 YFDPMFPE 163 (234)
T ss_dssp EE--S---
T ss_pred EECCCCCC
Confidence 99888754
No 278
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.02 E-value=0.0012 Score=57.99 Aligned_cols=60 Identities=28% Similarity=0.449 Sum_probs=51.4
Q ss_pred CeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCC
Q 023703 101 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDT 160 (278)
Q Consensus 101 ~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~ 160 (278)
..|||||+|||.++...++.|+..|++++.-..|.+.|++....+|.+ +|.++...-.+.
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev 128 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEV 128 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeecccccee
Confidence 368999999999999999998779999999999999999999999875 377776555544
No 279
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.96 E-value=0.0019 Score=52.00 Aligned_cols=103 Identities=21% Similarity=0.272 Sum_probs=75.4
Q ss_pred CeEEEEecCCCHHHHHHhhC--------CC--CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc--------c
Q 023703 101 WSVLDIGTGNGLLLQELSKQ--------GF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--------L 162 (278)
Q Consensus 101 ~~vLDiGcG~G~~~~~l~~~--------~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~--------~ 162 (278)
.+++|+++..|.++..|.++ +. ..|+++|+-+- ..++.+..+++|++... +
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~GV~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIEGVIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------CccCceEEeecccCCHhHHHHHHHHh
Confidence 58999999999999988775 11 13999998553 23356888999998863 2
Q ss_pred -CCCccEEEeCCccceeccCCCCh----hhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703 163 -ERQFQLVMDKGTLDAIGLHPDGP----LKRIMYWDSVSKLVAPGGLLVITSCNSTK 214 (278)
Q Consensus 163 -~~~fD~v~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 214 (278)
.++.|+|+|.+.-|...+|..+. .-....|.-...+|||||.|+.-.+-...
T Consensus 112 ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~ 168 (294)
T KOG1099|consen 112 GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRD 168 (294)
T ss_pred CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCc
Confidence 35899999999888777765443 22235556677899999999987654443
No 280
>PRK11524 putative methyltransferase; Provisional
Probab=96.92 E-value=0.0021 Score=54.79 Aligned_cols=46 Identities=15% Similarity=0.091 Sum_probs=42.1
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhh
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR 144 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~ 144 (278)
.+|..|||..||+|..+.+..+.| ++.+|+|++++.++.|++++..
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lg-R~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASG-RKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcC-CCEEEEeCCHHHHHHHHHHHHh
Confidence 688999999999999999999886 6899999999999999999753
No 281
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.92 E-value=0.0061 Score=52.66 Aligned_cols=95 Identities=18% Similarity=0.245 Sum_probs=65.0
Q ss_pred ccCCCCeEEEEecC-CCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEcc-ccCCc-cCCCccEEEe
Q 023703 96 KYLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDD-VLDTK-LERQFQLVMD 171 (278)
Q Consensus 96 ~~~~~~~vLDiGcG-~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d-~~~~~-~~~~fD~v~~ 171 (278)
+..|+.+|+-+|+| .|..+..+++. | ++|+++|.|+.-.+.|++.-. -.++... ..... ..+.||+|+.
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGA------d~~i~~~~~~~~~~~~~~~d~ii~ 235 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGA------DHVINSSDSDALEAVKEIADAIID 235 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCC------cEEEEcCCchhhHHhHhhCcEEEE
Confidence 45788999999987 33667777774 7 599999999999999987532 1233322 11111 1234999987
Q ss_pred CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703 172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 211 (278)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 211 (278)
.-+ . ..+....+.|++||++++....
T Consensus 236 tv~-~-------------~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 236 TVG-P-------------ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred CCC-h-------------hhHHHHHHHHhcCCEEEEECCC
Confidence 543 2 1237788999999999998654
No 282
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.90 E-value=0.0026 Score=54.41 Aligned_cols=112 Identities=21% Similarity=0.252 Sum_probs=70.4
Q ss_pred CCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEcccc----CCccCCCccEEEeC
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVL----DTKLERQFQLVMDK 172 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~----~~~~~~~fD~v~~~ 172 (278)
.+.+|||+|.|.|....++-.. + ...++.++.|+..-+...................|+. +++....|++++..
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~ 192 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVL 192 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhh
Confidence 4567999999999877666554 2 2478888888876666554443222222233333333 23334567777754
Q ss_pred CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703 173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK 214 (278)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 214 (278)
.-+ ++.........+++.+..++.|||.+++++...+.
T Consensus 193 ~eL----l~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 193 DEL----LPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred hhh----ccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 332 22233334455789999999999999999876654
No 283
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.85 E-value=0.0052 Score=49.19 Aligned_cols=101 Identities=18% Similarity=0.264 Sum_probs=54.0
Q ss_pred CCCeEEEEecCCCHHHHHHhhC-----CCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCcc---------C
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQ-----GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL---------E 163 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~~---------~ 163 (278)
++..|+|+|.-.|..+..+|.. +..+|+|+|++......... +.... ++|+++++|..+... .
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~--e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~ 109 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAI--ESHPMSPRITFIQGDSIDPEIVDQVRELASP 109 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GG--GG----TTEEEEES-SSSTHHHHTSGSS---
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHH--hhccccCceEEEECCCCCHHHHHHHHHhhcc
Confidence 5679999999999888777652 33599999996443322211 11111 469999999987531 1
Q ss_pred CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 164 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 164 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
....+|+.... |. .......|+....++++|+++++.+
T Consensus 110 ~~~vlVilDs~--H~------~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 110 PHPVLVILDSS--HT------HEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp -SSEEEEESS------------SSHHHHHHHHHHT--TT-EEEETS
T ss_pred CCceEEEECCC--cc------HHHHHHHHHHhCccCCCCCEEEEEe
Confidence 23446665432 11 1144555677899999999999864
No 284
>PRK13699 putative methylase; Provisional
Probab=96.73 E-value=0.0042 Score=51.07 Aligned_cols=47 Identities=19% Similarity=0.117 Sum_probs=42.3
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD 145 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~ 145 (278)
.++..|||..||+|..+....+.| .+.+|+|+++...+.+.++++..
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~-r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSG-RRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcC-CCEEEEecCHHHHHHHHHHHHHH
Confidence 578899999999999999999887 58999999999999999988653
No 285
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=96.72 E-value=0.019 Score=47.66 Aligned_cols=113 Identities=19% Similarity=0.247 Sum_probs=84.4
Q ss_pred ccCCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc---CCCccEEEe
Q 023703 96 KYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---ERQFQLVMD 171 (278)
Q Consensus 96 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~---~~~fD~v~~ 171 (278)
+...|+.|+-+| -.-..+++++-.+ +.+|..+|+++..++.-.+-++..|+.|++.+.-|+.++-+ .++||+.+.
T Consensus 149 GDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiT 227 (354)
T COG1568 149 GDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFIT 227 (354)
T ss_pred cCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeec
Confidence 345778899999 4445555555543 45899999999999999999999999889999999998654 478999988
Q ss_pred CCccceeccCCCChhhHHHHHHHHHhcccCC---cEEEEEecCCChHHH
Q 023703 172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPG---GLLVITSCNSTKDEL 217 (278)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg---G~l~~~~~~~~~~~~ 217 (278)
.++. .+. ....++.+-...||.- |++.++....+....
T Consensus 228 DPpe-Ti~-------alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW 268 (354)
T COG1568 228 DPPE-TIK-------ALKLFLGRGIATLKGEGCAGYFGITRRESSIDKW 268 (354)
T ss_pred Cchh-hHH-------HHHHHHhccHHHhcCCCccceEeeeeccccHHHH
Confidence 7654 222 5566777777778766 778777666555433
No 286
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.69 E-value=0.0026 Score=51.98 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=35.4
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHH
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQS 140 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~ 140 (278)
.++..|||..||+|..+.+....| ++.+|+|+++..++.|++
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l~-R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEELG-RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHcC-CeEEEEeCCHHHHHHhcC
Confidence 578899999999999999999987 589999999999999874
No 287
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.65 E-value=0.00092 Score=59.58 Aligned_cols=104 Identities=23% Similarity=0.294 Sum_probs=79.3
Q ss_pred cccCCCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCc-----cCCCc
Q 023703 95 DKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTK-----LERQF 166 (278)
Q Consensus 95 ~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~-----~~~~f 166 (278)
....++.+|||.-|++|.-++..+.. +..+|++.|.++.+++..++|.+.+++.+ ++....|+...- ....|
T Consensus 105 ~~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~F 184 (525)
T KOG1253|consen 105 KREEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFF 184 (525)
T ss_pred hhccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhcccccccc
Confidence 34456779999999999999888887 55689999999999999999999987755 566677765432 13567
Q ss_pred cEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 167 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 167 D~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
|+|=. +|.+ ....||+.+.+.++.||+|+++.
T Consensus 185 DvIDL---------DPyG--s~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 185 DVIDL---------DPYG--SPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred ceEec---------CCCC--CccHHHHHHHHHhhcCCEEEEEe
Confidence 76532 2222 44567799999999999999863
No 288
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.59 E-value=0.018 Score=47.57 Aligned_cols=107 Identities=11% Similarity=0.072 Sum_probs=64.1
Q ss_pred CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC-----CCc-ceEEEEccccCCc----cCCC-cc
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-----GFS-CIKFLVDDVLDTK----LERQ-FQ 167 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~-----~~~-~~~~~~~d~~~~~----~~~~-fD 167 (278)
...+||++|+|+|..++.++.....+|+..|..... +..+.+...+ .+. .+.+...+..... .... +|
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~-~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVV-ENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhH-HHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 456899999999988888888644589998875543 3333332222 111 3444444443322 1233 89
Q ss_pred EEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703 168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 213 (278)
Q Consensus 168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 213 (278)
+|++..++-.. . ....++..++..|..+|.+++...-..
T Consensus 165 lilasDvvy~~----~---~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 165 LILASDVVYEE----E---SFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred EEEEeeeeecC----C---cchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 99987765322 2 233344677788888887666665443
No 289
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.37 E-value=0.0044 Score=55.70 Aligned_cols=107 Identities=15% Similarity=0.286 Sum_probs=66.8
Q ss_pred CeEEEEecCCCHHHHHHhhCCCC--cEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC-c-cCCCccEEEeCCccc
Q 023703 101 WSVLDIGTGNGLLLQELSKQGFS--DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-K-LERQFQLVMDKGTLD 176 (278)
Q Consensus 101 ~~vLDiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~-~-~~~~fD~v~~~~~~~ 176 (278)
..|+|+.+|.|.|+.+|.+.+.. +|+-++ .+..+...- ..|+ +- .-.|..+. + .+.+||++-+++.|.
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~-~~ntL~vIy----dRGL--IG-~yhDWCE~fsTYPRTYDLlHA~~lfs 438 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPVS-GPNTLPVIY----DRGL--IG-VYHDWCEAFSTYPRTYDLLHADGLFS 438 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEecccC-CCCcchhhh----hccc--ch-hccchhhccCCCCcchhheehhhhhh
Confidence 47999999999999999987531 222221 122222211 1222 11 12344332 2 478999999998886
Q ss_pred eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHH
Q 023703 177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH 219 (278)
Q Consensus 177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 219 (278)
... +. -....++-++-|+|+|||.+++.+...-.++...
T Consensus 439 ~~~-~r---C~~~~illEmDRILRP~G~~iiRD~~~vl~~v~~ 477 (506)
T PF03141_consen 439 LYK-DR---CEMEDILLEMDRILRPGGWVIIRDTVDVLEKVKK 477 (506)
T ss_pred hhc-cc---ccHHHHHHHhHhhcCCCceEEEeccHHHHHHHHH
Confidence 543 22 3456667899999999999999865544444333
No 290
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=96.24 E-value=0.0088 Score=50.03 Aligned_cols=76 Identities=17% Similarity=0.279 Sum_probs=48.7
Q ss_pred CCeEEEEecCCCHHHHHHhhC--C-------CCcEEEEeCChHHHHHHHHHhhhCC-----C-cceEEEEccccCCccCC
Q 023703 100 SWSVLDIGTGNGLLLQELSKQ--G-------FSDLTGVDYSEDAINLAQSLANRDG-----F-SCIKFLVDDVLDTKLER 164 (278)
Q Consensus 100 ~~~vLDiGcG~G~~~~~l~~~--~-------~~~v~~~D~s~~~i~~a~~~~~~~~-----~-~~~~~~~~d~~~~~~~~ 164 (278)
+.+|+|+|+|+|.++..+++. . ..+++.+|+||.+.+.-++++.... . .++.+ ..++.+.+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc---
Confidence 359999999999999887763 1 1379999999999999988876521 1 23555 33443332
Q ss_pred CccEEEeCCccceec
Q 023703 165 QFQLVMDKGTLDAIG 179 (278)
Q Consensus 165 ~fD~v~~~~~~~~~~ 179 (278)
..-+|++|..+|+++
T Consensus 95 ~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 95 FPGFIIANELFDALP 109 (252)
T ss_dssp CCEEEEEESSGGGS-
T ss_pred CCEEEEEeeehhcCc
Confidence 234666777776554
No 291
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=96.23 E-value=0.016 Score=50.12 Aligned_cols=69 Identities=17% Similarity=0.266 Sum_probs=54.1
Q ss_pred eEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc---CCCccEEEeCCccce
Q 023703 102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---ERQFQLVMDKGTLDA 177 (278)
Q Consensus 102 ~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~---~~~fD~v~~~~~~~~ 177 (278)
+++|+.||.|.+...+...|+..+.++|+++.+++.-+.|+. ....+|+.+... ++.+|+++...+-..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l~~~~D~l~ggpPCQ~ 73 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDLPKDVDLLIGGPPCQG 73 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHHHHT-SEEEEE---TT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-------ccccccccccccccccccceEEEeccCCce
Confidence 699999999999999999998789999999999999998873 678899988752 225999987665443
No 292
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=96.12 E-value=0.11 Score=48.15 Aligned_cols=112 Identities=17% Similarity=0.191 Sum_probs=74.5
Q ss_pred CCCeEEEEecCCCHHHHHHhhC---C--CCcEEEEeCChHHHHHHHHHhhhCCCc--ceEEEEccccCCc---cCCCccE
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQ---G--FSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTK---LERQFQL 168 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~---~--~~~v~~~D~s~~~i~~a~~~~~~~~~~--~~~~~~~d~~~~~---~~~~fD~ 168 (278)
++..|.|+.||+|.+....... | ...++|.+..+.+...++.++..++.. ......+|-...+ ...+||.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 5678999999999988764432 2 136999999999999999987655542 2333344443321 1356999
Q ss_pred EEeCCccceec----------------cC--CCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 169 VMDKGTLDAIG----------------LH--PDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 169 v~~~~~~~~~~----------------~~--~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
|++++++...- .| ++....-..++..+..+|++||...+.-+
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~ 356 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCF 356 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEec
Confidence 99999875320 01 11112335677889999999998766544
No 293
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.12 E-value=0.027 Score=47.94 Aligned_cols=101 Identities=20% Similarity=0.207 Sum_probs=64.8
Q ss_pred cccCCCCeEEEEecCCCH-HHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccc--cCC------cc-C
Q 023703 95 DKYLSSWSVLDIGTGNGL-LLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV--LDT------KL-E 163 (278)
Q Consensus 95 ~~~~~~~~vLDiGcG~G~-~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~--~~~------~~-~ 163 (278)
.+.+++.+||-+|+|.=. .+...|+. |+++|+.+|+++..++.|++ + |...+......- .+. .. .
T Consensus 165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~~~~~~~~~~~~~~~~~~v~~~~g~ 240 (354)
T KOG0024|consen 165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GATVTDPSSHKSSPQELAELVEKALGK 240 (354)
T ss_pred cCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCeEEeeccccccHHHHHHHHHhhccc
Confidence 345789999999999744 44444554 88899999999999999998 3 332222211111 110 01 2
Q ss_pred CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703 164 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 212 (278)
Q Consensus 164 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 212 (278)
..+|+.+...-++. -++.+...+++||.+++.....
T Consensus 241 ~~~d~~~dCsG~~~-------------~~~aai~a~r~gGt~vlvg~g~ 276 (354)
T KOG0024|consen 241 KQPDVTFDCSGAEV-------------TIRAAIKATRSGGTVVLVGMGA 276 (354)
T ss_pred cCCCeEEEccCchH-------------HHHHHHHHhccCCEEEEeccCC
Confidence 44888876544321 1266788899999988875433
No 294
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=96.12 E-value=0.0053 Score=51.23 Aligned_cols=104 Identities=17% Similarity=0.245 Sum_probs=62.1
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHH-------Hh----hhCCCcceEEEEccccCCc--cCC
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQS-------LA----NRDGFSCIKFLVDDVLDTK--LER 164 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~-------~~----~~~~~~~~~~~~~d~~~~~--~~~ 164 (278)
..+++|||+|||+|...+.....|...+...|+|...++.-.- .+ +... .-..+.+.++.+.. ..+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~-~~~~i~~s~l~dg~~~~t~ 193 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENH-KVDEILNSLLSDGVFNHTE 193 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcc-cceeccccccccchhhhcc
Confidence 4678999999999999999988876689999998887731110 00 0000 01223333111211 123
Q ss_pred --CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703 165 --QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 208 (278)
Q Consensus 165 --~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 208 (278)
.||+|.+..++-... . ....+.......++++|+++..
T Consensus 194 ~~~ydlIlsSetiy~~~----~--~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 194 RTHYDLILSSETIYSID----S--LAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred ccchhhhhhhhhhhCcc----h--hhhhHhhhhhhcCCccchhhhh
Confidence 788888776654332 1 1111135566778899988765
No 295
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.03 E-value=0.048 Score=47.51 Aligned_cols=103 Identities=13% Similarity=0.191 Sum_probs=71.8
Q ss_pred CeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccC---C-CccEEEeCCccc
Q 023703 101 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE---R-QFQLVMDKGTLD 176 (278)
Q Consensus 101 ~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~---~-~fD~v~~~~~~~ 176 (278)
.+++|+.||.|.+..-+...|+.-+.++|+++.+++.-+.|+.. ..+...|+...... . .+|+++...+-+
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~~~~~~~DvligGpPCQ 78 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEALRKSDVDVLIGGPPCQ 78 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChhhccccCCCEEEeCCCCc
Confidence 48999999999999999999988899999999999998887742 45667777765432 2 789999877765
Q ss_pred eeccCC-C-Chh----hHHHHHHHHHhcccCCcEEEEEe
Q 023703 177 AIGLHP-D-GPL----KRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 177 ~~~~~~-~-~~~----~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
.+..-- . +.. ...--+.++...++| -.+++..
T Consensus 79 ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~EN 116 (328)
T COG0270 79 DFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLEN 116 (328)
T ss_pred chhhcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEec
Confidence 554211 0 111 112233566677788 5555553
No 296
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=96.03 E-value=0.015 Score=50.30 Aligned_cols=80 Identities=11% Similarity=0.134 Sum_probs=54.7
Q ss_pred CCCeEEEEecCCCHHHHHHhhC---------CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEE
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQ---------GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLV 169 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~---------~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v 169 (278)
.+..++|||.|+|.++..+++. ...++..+++|+...+.-+++++... -.+......+..+..-.-++
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~---~~~~~~~~~e~~p~~~~~i~ 153 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE---DLIRWVEWVEDLPKKFPGIV 153 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc---cchhHHHHHHhccccCceEE
Confidence 3468999999999998877663 13489999999999998888886543 11122222222222224578
Q ss_pred EeCCccceeccC
Q 023703 170 MDKGTLDAIGLH 181 (278)
Q Consensus 170 ~~~~~~~~~~~~ 181 (278)
++|..||+++++
T Consensus 154 ~~NElfDAlPv~ 165 (370)
T COG1565 154 VSNELFDALPVE 165 (370)
T ss_pred Eechhhccccce
Confidence 899999988753
No 297
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.00 E-value=0.024 Score=50.51 Aligned_cols=110 Identities=22% Similarity=0.263 Sum_probs=66.5
Q ss_pred cccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEcc-ccC----CccCCCcc
Q 023703 95 DKYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDD-VLD----TKLERQFQ 167 (278)
Q Consensus 95 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d-~~~----~~~~~~fD 167 (278)
....++.+||..|||. |..+..+++. |..+++++|.++...+.+++.. +...+.....+ ..+ ......+|
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~~vi~~~~~~~~~~~l~~~~~~~~~D 256 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GAETINFEEVDDVVEALRELTGGRGPD 256 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---CcEEEcCCcchHHHHHHHHHcCCCCCC
Confidence 3446788999999987 7777777776 5446999999999998888742 21112222221 111 11123689
Q ss_pred EEEeCCccc-----------eeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 168 LVMDKGTLD-----------AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 168 ~v~~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
+++..-.-+ ++ +.+.+ +....+..+.+.|+|+|.++....
T Consensus 257 ~vld~vg~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 257 VCIDAVGMEAHGSPLHKAEQAL-LKLET--DRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred EEEECCCCcccccccccccccc-ccccc--CchHHHHHHHHHhccCCEEEEEcC
Confidence 988742111 00 00000 112345788899999999988753
No 298
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.75 E-value=0.062 Score=46.51 Aligned_cols=70 Identities=13% Similarity=0.147 Sum_probs=53.6
Q ss_pred EEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc--CCCccEEEeCCcccee
Q 023703 103 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDKGTLDAI 178 (278)
Q Consensus 103 vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~v~~~~~~~~~ 178 (278)
|+|+.||.|.++.-+.+.|+.-+.++|+++.+++.-+.|+. + .+..+|+.+... -..+|+++...+-..+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~f 72 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISPSDIPDFDILLGGFPCQPF 72 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhhhhCCCcCEEEecCCCccc
Confidence 68999999999999998888677889999999999888763 2 345677776542 2358999876655444
No 299
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=95.64 E-value=0.0026 Score=45.26 Aligned_cols=46 Identities=17% Similarity=0.325 Sum_probs=32.9
Q ss_pred CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703 165 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 211 (278)
Q Consensus 165 ~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 211 (278)
+||+|+|..+.-++.++.- .+....+++.+.+.|+|||.+++..-+
T Consensus 1 ~yDvilclSVtkWIHLn~G-D~Gl~~~f~~~~~~L~pGG~lilEpQ~ 46 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWG-DEGLKRFFRRIYSLLRPGGILILEPQP 46 (110)
T ss_dssp -EEEEEEES-HHHHHHHHH-HHHHHHHHHHHHHHEEEEEEEEEE---
T ss_pred CccEEEEEEeeEEEEecCc-CHHHHHHHHHHHHhhCCCCEEEEeCCC
Confidence 4899999887766654432 335678889999999999999998543
No 300
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.55 E-value=0.012 Score=41.70 Aligned_cols=32 Identities=34% Similarity=0.570 Sum_probs=27.5
Q ss_pred CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCC
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYS 131 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s 131 (278)
+....+|||||+|.+.-.|.+.|+ .-.|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence 345799999999999999999997 68899963
No 301
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=95.49 E-value=0.011 Score=52.04 Aligned_cols=63 Identities=17% Similarity=0.208 Sum_probs=55.3
Q ss_pred cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc--ceEEEEccccCC
Q 023703 97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDT 160 (278)
Q Consensus 97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~--~~~~~~~d~~~~ 160 (278)
.++|..|.|+.||.|-+++.++..++ .|++-|.++.+++..+.+++.+.+. +++.+..|+...
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence 46788999999999999999999985 8999999999999999999988774 378888887653
No 302
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=95.44 E-value=0.041 Score=49.40 Aligned_cols=112 Identities=17% Similarity=0.152 Sum_probs=75.0
Q ss_pred CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC--------ccCCCccE
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT--------KLERQFQL 168 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~--------~~~~~fD~ 168 (278)
..+.++|-+|-|.|.+...+... +...++++++.|.+++.|++++....-.+..+...|..+. ..+..||+
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 34568999999999998888776 5569999999999999999987543212233333443321 12457998
Q ss_pred EEeC-Cc--cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 169 VMDK-GT--LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 169 v~~~-~~--~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
++.. .. .+.+.+.++.. -...++..++.+|.|.|.+++-..
T Consensus 374 l~~dvds~d~~g~~~pp~~f-va~~~l~~~k~~l~p~g~f~inlv 417 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAF-VAQVALQPVKMILPPRGMFIINLV 417 (482)
T ss_pred EEEECCCCCcccCcCCchHH-HHHHHHHHHhhccCccceEEEEEe
Confidence 8742 11 22333333332 335677899999999999988643
No 303
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=95.24 E-value=0.14 Score=42.43 Aligned_cols=126 Identities=14% Similarity=0.100 Sum_probs=72.3
Q ss_pred hhhccccCCCCeEEEEecCCCHHHHHHhh----CC--CCcEEEEeCC--------------------------hHHHHHH
Q 023703 91 VEENDKYLSSWSVLDIGTGNGLLLQELSK----QG--FSDLTGVDYS--------------------------EDAINLA 138 (278)
Q Consensus 91 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~----~~--~~~v~~~D~s--------------------------~~~i~~a 138 (278)
++.+....-++.|+|.||-.|..+..++. .+ .+++++.|-= ....+..
T Consensus 66 ~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V 145 (248)
T PF05711_consen 66 VEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEV 145 (248)
T ss_dssp HHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHH
T ss_pred HHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHH
Confidence 33333334456999999999976654432 22 3468887632 1246666
Q ss_pred HHHhhhCCC--cceEEEEccccCCccC---CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703 139 QSLANRDGF--SCIKFLVDDVLDTKLE---RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 213 (278)
Q Consensus 139 ~~~~~~~~~--~~~~~~~~d~~~~~~~---~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 213 (278)
++++...++ +++.++.+.+.+..+. +++-+ +.++-+-.+.....|+.+...|.|||++++-+.+.
T Consensus 146 ~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAl---------l~lD~DlYesT~~aLe~lyprl~~GGiIi~DDY~~- 215 (248)
T PF05711_consen 146 RENFARYGLLDDNVRFVKGWFPDTLPDAPIERIAL---------LHLDCDLYESTKDALEFLYPRLSPGGIIIFDDYGH- 215 (248)
T ss_dssp HHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEE---------EEE---SHHHHHHHHHHHGGGEEEEEEEEESSTTT-
T ss_pred HHHHHHcCCCcccEEEECCcchhhhccCCCccEEE---------EEEeccchHHHHHHHHHHHhhcCCCeEEEEeCCCC-
Confidence 777766664 4699999998654332 22222 22333344567788899999999999999998777
Q ss_pred hHHHHHHHhhhhhc
Q 023703 214 KDELVHEVSNLSQR 227 (278)
Q Consensus 214 ~~~~~~~~~~~~~~ 227 (278)
..-.+.+.+|...
T Consensus 216 -~gcr~AvdeF~~~ 228 (248)
T PF05711_consen 216 -PGCRKAVDEFRAE 228 (248)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHH
Confidence 3334445555433
No 304
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.14 E-value=0.21 Score=45.96 Aligned_cols=102 Identities=13% Similarity=0.146 Sum_probs=61.6
Q ss_pred cCCCCeEEEEecCCCH-HHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEE--Ecc------ccCCc-----
Q 023703 97 YLSSWSVLDIGTGNGL-LLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFL--VDD------VLDTK----- 161 (278)
Q Consensus 97 ~~~~~~vLDiGcG~G~-~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~--~~d------~~~~~----- 161 (278)
..++.+|+-+|||.=. .+...+.. |+ +|+++|.++..++.+++ .|...+.+- ..+ +....
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aes----lGA~~v~i~~~e~~~~~~gya~~~s~~~~~ 236 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVES----MGAEFLELDFEEEGGSGDGYAKVMSEEFIK 236 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCeEEEeccccccccccchhhhcchhHHH
Confidence 3578899999999754 44444544 76 89999999999998886 232111111 100 00000
Q ss_pred ------cC--CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 162 ------LE--RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 162 ------~~--~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
.+ ..+|+++....... ......+.+++.+.+||||.++....
T Consensus 237 ~~~~~~~~~~~gaDVVIetag~pg-------~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 237 AEMALFAEQAKEVDIIITTALIPG-------KPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHHhccCCCCEEEECCCCCc-------ccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 01 35899987433211 00112223889999999999888765
No 305
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.12 E-value=0.034 Score=50.31 Aligned_cols=105 Identities=20% Similarity=0.309 Sum_probs=69.7
Q ss_pred CCeEEEEecCCCHHHHHHhh---CC--CCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCccC-CCccEEEeC
Q 023703 100 SWSVLDIGTGNGLLLQELSK---QG--FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLE-RQFQLVMDK 172 (278)
Q Consensus 100 ~~~vLDiGcG~G~~~~~l~~---~~--~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~~~-~~fD~v~~~ 172 (278)
...|+-+|.|-|-+.....+ .- .-++++++-+|.++--.+.+ +.... .+++++..|+.++..+ ++.|++++-
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE 446 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-NFECWDNRVTIISSDMRKWNAPREQADIIVSE 446 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-chhhhcCeeEEEeccccccCCchhhccchHHH
Confidence 34678899999966554433 21 12799999999998877653 22222 3599999999999865 889988862
Q ss_pred CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
.+..+......+ .-|.-+-+.|||+|+.+=...
T Consensus 447 -LLGSFGDNELSP----ECLDG~q~fLkpdgIsIP~sY 479 (649)
T KOG0822|consen 447 -LLGSFGDNELSP----ECLDGAQKFLKPDGISIPSSY 479 (649)
T ss_pred -hhccccCccCCH----HHHHHHHhhcCCCceEccchh
Confidence 222222122222 334778899999998776543
No 306
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.08 E-value=0.086 Score=46.07 Aligned_cols=96 Identities=20% Similarity=0.248 Sum_probs=56.6
Q ss_pred CCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCc-cCCCccEEEeCC
Q 023703 98 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTK-LERQFQLVMDKG 173 (278)
Q Consensus 98 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~-~~~~fD~v~~~~ 173 (278)
.++.+||-.|||. |..+..+++. |..+|+++|.++..++.+++ .|... +.....+..+.. ..+.+|+++..-
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~ 243 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYKAEKGYFDVSFEVS 243 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHhccCCCCCEEEECC
Confidence 4678999888742 2334445554 66579999999998888875 33221 111111221111 123478887532
Q ss_pred ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
. . ...++.+.++|++||++++...
T Consensus 244 G------------~-~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 244 G------------H-PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred C------------C-HHHHHHHHHHhhcCCEEEEEcc
Confidence 1 0 1123678889999999988754
No 307
>PRK10458 DNA cytosine methylase; Provisional
Probab=94.95 E-value=0.28 Score=44.76 Aligned_cols=77 Identities=12% Similarity=0.153 Sum_probs=54.4
Q ss_pred CCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------------
Q 023703 100 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------------- 162 (278)
Q Consensus 100 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~----------------- 162 (278)
..+++|+.||.|.+...+-..|+..|.++|+++.+.+.-+.|+... +....+..|+.+...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~--p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~ 165 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD--PATHRFNEDIRDITLSHKEGVSDEEAAEHIRQ 165 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC--CccceeccChhhCccccccccchhhhhhhhhc
Confidence 4599999999999999998888777899999999998888775311 123344556555431
Q ss_pred -CCCccEEEeCCcccee
Q 023703 163 -ERQFQLVMDKGTLDAI 178 (278)
Q Consensus 163 -~~~fD~v~~~~~~~~~ 178 (278)
-...|+++...+-..+
T Consensus 166 ~~p~~DvL~gGpPCQ~F 182 (467)
T PRK10458 166 HIPDHDVLLAGFPCQPF 182 (467)
T ss_pred cCCCCCEEEEcCCCCcc
Confidence 1257888876554433
No 308
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.63 E-value=0.33 Score=34.98 Aligned_cols=95 Identities=14% Similarity=0.203 Sum_probs=60.6
Q ss_pred cCCCHHHHHHhhC---CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----CCCccEEEeCCccceec
Q 023703 108 TGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVMDKGTLDAIG 179 (278)
Q Consensus 108 cG~G~~~~~l~~~---~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----~~~fD~v~~~~~~~~~~ 179 (278)
||.|.++..+++. +..+|+.+|.++..++.++.. .+.++.+|..+... -.+.+.+++...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-------GVEVIYGDATDPEVLERAGIEKADAVVILTD----- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-------TSEEEES-TTSHHHHHHTTGGCESEEEEESS-----
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-------ccccccccchhhhHHhhcCccccCEEEEccC-----
Confidence 6777788777664 334799999999998888762 36789999988531 246776665322
Q ss_pred cCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHH
Q 023703 180 LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH 219 (278)
Q Consensus 180 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 219 (278)
+. ..-..+....+.+.|...++....+....+.+.
T Consensus 72 ----~d-~~n~~~~~~~r~~~~~~~ii~~~~~~~~~~~l~ 106 (116)
T PF02254_consen 72 ----DD-EENLLIALLARELNPDIRIIARVNDPENAELLR 106 (116)
T ss_dssp ----SH-HHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHH
T ss_pred ----CH-HHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHH
Confidence 11 222223445566778888888776665544444
No 309
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.62 E-value=0.41 Score=42.44 Aligned_cols=112 Identities=12% Similarity=0.124 Sum_probs=61.4
Q ss_pred CCeEEEEecCCCHHHHHHhhC------------C----CCcEEEEeCChHHHHHHHHHhhh--------------CCCcc
Q 023703 100 SWSVLDIGTGNGLLLQELSKQ------------G----FSDLTGVDYSEDAINLAQSLANR--------------DGFSC 149 (278)
Q Consensus 100 ~~~vLDiGcG~G~~~~~l~~~------------~----~~~v~~~D~s~~~i~~a~~~~~~--------------~~~~~ 149 (278)
..+|+|+|||+|.+++.+... + .-+|..-|...+--...-+.+.. .+...
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 568999999999777655321 1 12566666654322222111110 01001
Q ss_pred --eEEEEccccCC-ccCCCccEEEeCCccceeccCCCCh-------------------------------hhHHHHHHHH
Q 023703 150 --IKFLVDDVLDT-KLERQFQLVMDKGTLDAIGLHPDGP-------------------------------LKRIMYWDSV 195 (278)
Q Consensus 150 --~~~~~~d~~~~-~~~~~fD~v~~~~~~~~~~~~~~~~-------------------------------~~~~~~l~~~ 195 (278)
+.-+.+....- -+.++.+++++.-.++++.--|.+. .+...+|+.-
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112333222 2467889999888887765222111 1234566667
Q ss_pred HhcccCCcEEEEEecC
Q 023703 196 SKLVAPGGLLVITSCN 211 (278)
Q Consensus 196 ~~~LkpgG~l~~~~~~ 211 (278)
.+-|.|||+++++...
T Consensus 224 a~ELvpGG~mvl~~~G 239 (386)
T PLN02668 224 AQEMKRGGAMFLVCLG 239 (386)
T ss_pred HHHhccCcEEEEEEec
Confidence 7788999999998643
No 310
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=94.49 E-value=0.23 Score=43.58 Aligned_cols=95 Identities=19% Similarity=0.319 Sum_probs=55.0
Q ss_pred CCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeC---ChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeC
Q 023703 98 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDY---SEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDK 172 (278)
Q Consensus 98 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~---s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~ 172 (278)
.++.+||-+|+|. |.++..+++. |+ +|++++. ++.-.+.+++ .|...+.....+..+....+.+|+|+..
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~----~Ga~~v~~~~~~~~~~~~~~~~d~vid~ 245 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEE----LGATYVNSSKTPVAEVKLVGEFDLIIEA 245 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH----cCCEEecCCccchhhhhhcCCCCEEEEC
Confidence 4678999998753 3444555555 65 7999987 6676666654 3332121111111110112457888763
Q ss_pred CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
-.- ...+..+.++|+++|.+++...
T Consensus 246 ~g~-------------~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 246 TGV-------------PPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred cCC-------------HHHHHHHHHHccCCcEEEEEec
Confidence 211 1134778899999999987653
No 311
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=94.41 E-value=0.3 Score=42.21 Aligned_cols=97 Identities=26% Similarity=0.343 Sum_probs=59.4
Q ss_pred cccCCCCeEEEEecC-CCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEc-ccc---CCccCCCccE
Q 023703 95 DKYLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD-DVL---DTKLERQFQL 168 (278)
Q Consensus 95 ~~~~~~~~vLDiGcG-~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~-d~~---~~~~~~~fD~ 168 (278)
....++.+||..|+| .|..+..+++. |. +|++++.++...+.+++ .+...+-.... +.. .....+.+|+
T Consensus 161 ~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~D~ 235 (338)
T cd08254 161 GEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKKAAGLGGGFDV 235 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHHHHhcCCCceE
Confidence 345677899998775 36666677775 64 79999999988887754 23221111000 100 0112356888
Q ss_pred EEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 169 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 169 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
++..... ...++.+.+.|+++|.++...
T Consensus 236 vid~~g~-------------~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 236 IFDFVGT-------------QPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred EEECCCC-------------HHHHHHHHHHhhcCCEEEEEC
Confidence 8753211 123377889999999998764
No 312
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=94.38 E-value=0.078 Score=45.02 Aligned_cols=105 Identities=17% Similarity=0.200 Sum_probs=67.2
Q ss_pred ccccccCcccccccccccch---hhhccccCCC-Ce---EEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHH
Q 023703 71 CISISQGHMLNHVEDLKSEP---VEENDKYLSS-WS---VLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSL 141 (278)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~---vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~ 141 (278)
...+..|++.|........+ -.++...+.+ .+ -+|||+|...+--.+... ++ ..+++|++...++.|+++
T Consensus 67 ~veiP~grLcPtVPnR~nYihwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~-~f~~teidd~s~~~a~sn 145 (419)
T KOG2912|consen 67 SVEIPLGRLCPTVPNRLNYIHWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNW-YFLATEIDDMSFNYAKSN 145 (419)
T ss_pred eEecCccccCCCCccchhhHHHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccc-eeeeeeccccccchhhcc
Confidence 34677777777764433222 2222222222 22 479998887765555444 33 789999999999999999
Q ss_pred hhhCCCcc-eEEEEccccC--------CccCCCccEEEeCCccc
Q 023703 142 ANRDGFSC-IKFLVDDVLD--------TKLERQFQLVMDKGTLD 176 (278)
Q Consensus 142 ~~~~~~~~-~~~~~~d~~~--------~~~~~~fD~v~~~~~~~ 176 (278)
..++++.. +.+++....+ ...+..||.+.||++|-
T Consensus 146 V~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcNPPFf 189 (419)
T KOG2912|consen 146 VEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCNPPFF 189 (419)
T ss_pred ccccccccceeeEEecchhhcchhhhccCccceeeEEecCCchh
Confidence 99988754 5555543322 12245699999999873
No 313
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=94.33 E-value=0.29 Score=35.16 Aligned_cols=63 Identities=24% Similarity=0.419 Sum_probs=46.9
Q ss_pred CCCeEEEEecCCC-HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc--CCCccEEEeCC
Q 023703 99 SSWSVLDIGTGNG-LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDKG 173 (278)
Q Consensus 99 ~~~~vLDiGcG~G-~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~v~~~~ 173 (278)
..++|.++|-|-= ..+..|+++|+ .++++|+++. +. + ..+++...|++++.. -...|+|++-.
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~-------~a---~-~g~~~v~DDitnP~~~iY~~A~lIYSiR 78 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK-------TA---P-EGLRFVVDDITNPNISIYEGADLIYSIR 78 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHcCC-cEEEEecccc-------cC---c-ccceEEEccCCCccHHHhhCccceeecC
Confidence 4459999998876 45667888887 7999999887 11 1 358899999998754 35678888743
No 314
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=94.09 E-value=1.1 Score=37.03 Aligned_cols=113 Identities=15% Similarity=0.189 Sum_probs=72.2
Q ss_pred ccCCCCeEEEEecCCCHHHHHHhh----CC-CCcEEEEeCChHHHHHHHHHh-hhC-CCcceEEEEccccCCc---cCCC
Q 023703 96 KYLSSWSVLDIGTGNGLLLQELSK----QG-FSDLTGVDYSEDAINLAQSLA-NRD-GFSCIKFLVDDVLDTK---LERQ 165 (278)
Q Consensus 96 ~~~~~~~vLDiGcG~G~~~~~l~~----~~-~~~v~~~D~s~~~i~~a~~~~-~~~-~~~~~~~~~~d~~~~~---~~~~ 165 (278)
....+.+.+|+|+|+..-+..|.. .+ ..+++.+|+|...++...+.+ ... ++ .+.-+++|....- +...
T Consensus 75 ~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l-~v~~l~~~~~~~La~~~~~~ 153 (321)
T COG4301 75 SITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGL-EVNALCGDYELALAELPRGG 153 (321)
T ss_pred HhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCC-eEeehhhhHHHHHhcccCCC
Confidence 345578999999999976665544 33 248999999998887544433 222 22 3666677765421 1111
Q ss_pred ccE-EEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703 166 FQL-VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK 214 (278)
Q Consensus 166 fD~-v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 214 (278)
--+ ++...++ ....+.+...++.+++..|+||-.+++..-....
T Consensus 154 ~Rl~~flGStl-----GN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~ 198 (321)
T COG4301 154 RRLFVFLGSTL-----GNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKP 198 (321)
T ss_pred eEEEEEecccc-----cCCChHHHHHHHHHHHhcCCCcceEEEeccccCH
Confidence 122 2222233 3344667888999999999999999986544333
No 315
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.03 E-value=0.37 Score=42.37 Aligned_cols=99 Identities=22% Similarity=0.227 Sum_probs=63.2
Q ss_pred CCCCeEEEEecCCC-HHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEcc-ccC----CccCCCccEEE
Q 023703 98 LSSWSVLDIGTGNG-LLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDD-VLD----TKLERQFQLVM 170 (278)
Q Consensus 98 ~~~~~vLDiGcG~G-~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d-~~~----~~~~~~fD~v~ 170 (278)
.++.+|+=+|||+= .++..+++. |+++|+.+|.++.-++.|++.... ..+.....+ ... ......+|+++
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~---~~~~~~~~~~~~~~~~~~t~g~g~D~vi 243 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA---DVVVNPSEDDAGAEILELTGGRGADVVI 243 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC---eEeecCccccHHHHHHHHhCCCCCCEEE
Confidence 34458999999974 444555555 778999999999999999884321 111111111 110 01123699988
Q ss_pred eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703 171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 212 (278)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 212 (278)
.... ....+..+.++++|||.+.+.....
T Consensus 244 e~~G-------------~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 244 EAVG-------------SPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred ECCC-------------CHHHHHHHHHHhcCCCEEEEEeccC
Confidence 6332 1124478999999999999876443
No 316
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=93.99 E-value=0.11 Score=38.21 Aligned_cols=84 Identities=27% Similarity=0.349 Sum_probs=55.8
Q ss_pred CCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC-------ccCCCccEEEeCCccceecc
Q 023703 109 GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-------KLERQFQLVMDKGTLDAIGL 180 (278)
Q Consensus 109 G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~-------~~~~~fD~v~~~~~~~~~~~ 180 (278)
|.|..+..+++. | .+|+++|.++.-.+.+++. |.. .++..+-.+. .....+|+|+..-.-
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~----Ga~--~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~----- 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKEL----GAD--HVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS----- 68 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHT----TES--EEEETTTSSHHHHHHHHTTTSSEEEEEESSSS-----
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhh----ccc--ccccccccccccccccccccccceEEEEecCc-----
Confidence 457777777776 7 6999999999999888763 321 2222222211 112479999864321
Q ss_pred CCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703 181 HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 212 (278)
Q Consensus 181 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 212 (278)
...++...++|+|+|.+++.....
T Consensus 69 --------~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 69 --------GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp --------HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred --------HHHHHHHHHHhccCCEEEEEEccC
Confidence 123478889999999999987654
No 317
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=93.75 E-value=0.26 Score=43.32 Aligned_cols=98 Identities=17% Similarity=0.095 Sum_probs=57.1
Q ss_pred ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccC----CccCCCccE
Q 023703 96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLD----TKLERQFQL 168 (278)
Q Consensus 96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~----~~~~~~fD~ 168 (278)
...++.+||-.|||. |..+..+++. |..+|+++|.++.-.+.+++ .|.+. +.....+..+ ......+|+
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~ 248 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALTGGFGADV 248 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHhCCCCCCE
Confidence 456788999988742 2344445554 65469999999998888864 33221 1111111111 011235888
Q ss_pred EEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 169 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 169 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
++..-.- ...+....+.+++||++++...
T Consensus 249 vid~~g~-------------~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 249 VIDAVGR-------------PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred EEECCCC-------------HHHHHHHHHHhccCCEEEEECC
Confidence 8753210 1123667788999999988653
No 318
>PTZ00357 methyltransferase; Provisional
Probab=93.72 E-value=0.26 Score=46.35 Aligned_cols=71 Identities=14% Similarity=0.230 Sum_probs=47.5
Q ss_pred CeEEEEecCCCHHHHHHhhC----CCC-cEEEEeCChHHHHHHHHHhhh-CCC--------cceEEEEccccCCccC---
Q 023703 101 WSVLDIGTGNGLLLQELSKQ----GFS-DLTGVDYSEDAINLAQSLANR-DGF--------SCIKFLVDDVLDTKLE--- 163 (278)
Q Consensus 101 ~~vLDiGcG~G~~~~~l~~~----~~~-~v~~~D~s~~~i~~a~~~~~~-~~~--------~~~~~~~~d~~~~~~~--- 163 (278)
..|+-+|+|-|-+.....+. +.. +|+++|.++.++.....+... ... ..|+++..|+..+..+
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 36899999999665544332 322 899999997755444444321 122 1389999999997532
Q ss_pred ---------CCccEEEe
Q 023703 164 ---------RQFQLVMD 171 (278)
Q Consensus 164 ---------~~fD~v~~ 171 (278)
+++|++|+
T Consensus 782 ~s~~~P~~~gKaDIVVS 798 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVS 798 (1072)
T ss_pred ccccccccccccceehH
Confidence 37999987
No 319
>PRK13699 putative methylase; Provisional
Probab=93.64 E-value=0.22 Score=40.91 Aligned_cols=69 Identities=9% Similarity=0.064 Sum_probs=43.6
Q ss_pred EEEEccccCC---ccCCCccEEEeCCccceeccC-------CCC-hhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHH
Q 023703 151 KFLVDDVLDT---KLERQFQLVMDKGTLDAIGLH-------PDG-PLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH 219 (278)
Q Consensus 151 ~~~~~d~~~~---~~~~~fD~v~~~~~~~~~~~~-------~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 219 (278)
+++++|+.+. -+++++|+|+.+++|..-.-+ ... ..-....+.++.++|||||.+++.........+..
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~~~~~~~ 82 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMA 82 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccccHHHHHH
Confidence 5678888764 246899999999998521000 000 12234677999999999998887544333333333
No 320
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.55 E-value=0.023 Score=43.03 Aligned_cols=44 Identities=14% Similarity=0.237 Sum_probs=36.9
Q ss_pred CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703 163 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 211 (278)
Q Consensus 163 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 211 (278)
+++.|+|++..+++|+. ......+++++.+.|||||++-+..+.
T Consensus 45 dns~d~iyaeHvlEHlt-----~~Eg~~alkechr~Lrp~G~LriAvPd 88 (185)
T COG4627 45 DNSVDAIYAEHVLEHLT-----YDEGTSALKECHRFLRPGGKLRIAVPD 88 (185)
T ss_pred CcchHHHHHHHHHHHHh-----HHHHHHHHHHHHHHhCcCcEEEEEcCC
Confidence 57889999998988886 346677889999999999999987553
No 321
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=93.55 E-value=0.62 Score=40.65 Aligned_cols=113 Identities=12% Similarity=0.101 Sum_probs=60.8
Q ss_pred CCCeEEEEecCCCHHHHHHhhC------------C-----CCcEEEEeCChHHHHHHHHHhhhC-----CCcc--eEEEE
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQ------------G-----FSDLTGVDYSEDAINLAQSLANRD-----GFSC--IKFLV 154 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~------------~-----~~~v~~~D~s~~~i~~a~~~~~~~-----~~~~--~~~~~ 154 (278)
..-+|+|+||.+|..++.+... + .-+|+-.|.-.+--...-+.+... ...+ +.-+.
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 4468999999999888876541 1 016788887654322221111111 0112 33345
Q ss_pred ccccCC-ccCCCccEEEeCCccceeccCCCC---------------------h-----------hhHHHHHHHHHhcccC
Q 023703 155 DDVLDT-KLERQFQLVMDKGTLDAIGLHPDG---------------------P-----------LKRIMYWDSVSKLVAP 201 (278)
Q Consensus 155 ~d~~~~-~~~~~fD~v~~~~~~~~~~~~~~~---------------------~-----------~~~~~~l~~~~~~Lkp 201 (278)
+....- -++++.|++++...++++.--|.. + .+...+|+.=++-|+|
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~ 175 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVP 175 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred chhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheecc
Confidence 565543 356889999999888877521100 1 2334566666778899
Q ss_pred CcEEEEEecC
Q 023703 202 GGLLVITSCN 211 (278)
Q Consensus 202 gG~l~~~~~~ 211 (278)
||++++....
T Consensus 176 GG~mvl~~~g 185 (334)
T PF03492_consen 176 GGRMVLTFLG 185 (334)
T ss_dssp EEEEEEEEEE
T ss_pred CcEEEEEEee
Confidence 9999997543
No 322
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=93.21 E-value=0.44 Score=41.35 Aligned_cols=94 Identities=20% Similarity=0.378 Sum_probs=56.1
Q ss_pred CCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCcc-CCCccEEEeCCc
Q 023703 99 SSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKL-ERQFQLVMDKGT 174 (278)
Q Consensus 99 ~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~-~~~fD~v~~~~~ 174 (278)
++.+||-.|||. |..+..+++. |..++++++.++...+.+++. +... +.....+...... .+.+|+++....
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g 240 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----GADETVNLARDPLAAYAADKGDFDVVFEASG 240 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCCEEEcCCchhhhhhhccCCCccEEEECCC
Confidence 778999988765 5555566665 654799999998888766542 2211 1111111111111 234888886322
Q ss_pred cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
. ...++.+.+.|+++|+++...
T Consensus 241 ~-------------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 241 A-------------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred C-------------HHHHHHHHHHHhcCCEEEEEe
Confidence 1 112367889999999998764
No 323
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=93.16 E-value=0.32 Score=41.83 Aligned_cols=88 Identities=23% Similarity=0.266 Sum_probs=52.9
Q ss_pred CCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCcc
Q 023703 98 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTL 175 (278)
Q Consensus 98 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~ 175 (278)
.++.+||-+|||. |.++..+++. |+..|+++|.++..++.+... . ++ |..+. ....+|+|+..-.-
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~-----~i--~~~~~-~~~g~Dvvid~~G~ 210 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E-----VL--DPEKD-PRRDYRAIYDASGD 210 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c-----cc--Chhhc-cCCCCCEEEECCCC
Confidence 3567899888753 3445555554 765688889888776665431 1 01 11110 12458888863221
Q ss_pred ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
...+..+.+.|+++|++++...
T Consensus 211 -------------~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 211 -------------PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred -------------HHHHHHHHHhhhcCcEEEEEee
Confidence 1233678889999999997653
No 324
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=93.16 E-value=0.15 Score=44.43 Aligned_cols=51 Identities=27% Similarity=0.382 Sum_probs=40.4
Q ss_pred hhhhccccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHH
Q 023703 90 PVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL 141 (278)
Q Consensus 90 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~ 141 (278)
++..+.....-..|+|+|.|.|.++..+.-+ |. .|.+||-|....+.|++.
T Consensus 144 lvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~l-sV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 144 LVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGL-SVKAIEGSQRLVERAQRL 195 (476)
T ss_pred HHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCc-eEEEeccchHHHHHHHHH
Confidence 3444444455678999999999999999887 44 899999999888888664
No 325
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=93.10 E-value=2.9 Score=34.56 Aligned_cols=158 Identities=10% Similarity=0.069 Sum_probs=100.8
Q ss_pred ccccccCcchhhHHhhhhcccccccccCcccccccccccchhhhccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEe
Q 023703 50 AGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVD 129 (278)
Q Consensus 50 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D 129 (278)
.+..-.....++..++|...+.--.....++ ......+..+...+++.+ |..-||+-.++..+.+.. .++.+++
T Consensus 44 ~G~YdL~~~eA~ktgE~~~GI~RL~~a~~lp----a~l~~yl~~i~~lN~~~~-l~~YpGSP~lA~~llR~q-DRl~l~E 117 (279)
T COG2961 44 AGRYDLSGEEAEKTGEYEQGIARLWQAADLP----AELEPYLDAVRQLNPGGG-LRYYPGSPLLARQLLREQ-DRLVLTE 117 (279)
T ss_pred cceeeccchHhhhhhHHHHHHHHHHhcCCch----HHHHHHHHHHHHhCCCCC-cccCCCCHHHHHHHcchh-ceeeeee
Confidence 3443344444555666665432111111111 222233444555667666 899999999999998875 4899999
Q ss_pred CChHHHHHHHHHhhhCCCcceEEEEccccCC-----ccCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhccc--CC
Q 023703 130 YSEDAINLAQSLANRDGFSCIKFLVDDVLDT-----KLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVA--PG 202 (278)
Q Consensus 130 ~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~-----~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk--pg 202 (278)
+-|.-....++++... .++.+..+|-... ++.++=-+|+..++|+.-. +...+++.+.+.++ ++
T Consensus 118 LHp~D~~~L~~~f~~d--~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~~~-------eY~rvv~~l~~~~kRf~~ 188 (279)
T COG2961 118 LHPSDAPLLRNNFAGD--RRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFELKD-------EYQRVVEALAEAYKRFAT 188 (279)
T ss_pred cCccHHHHHHHHhCCC--cceEEEecCcHHHHhhhCCCCCcceEEEeCCCccccc-------HHHHHHHHHHHHHHhhcC
Confidence 9999999999998732 5799999998652 3445566888888886432 44444455555554 77
Q ss_pred cEEEEEecCCChHHHHHHHh
Q 023703 203 GLLVITSCNSTKDELVHEVS 222 (278)
Q Consensus 203 G~l~~~~~~~~~~~~~~~~~ 222 (278)
|+..+--+-....+.....+
T Consensus 189 g~yaiWYPik~r~~~~~f~~ 208 (279)
T COG2961 189 GTYAIWYPIKDRRQIRRFLR 208 (279)
T ss_pred ceEEEEEeecchHHHHHHHH
Confidence 88877776666665555444
No 326
>PRK11524 putative methyltransferase; Provisional
Probab=93.08 E-value=0.21 Score=42.59 Aligned_cols=62 Identities=10% Similarity=0.072 Sum_probs=42.2
Q ss_pred ceEEEEccccCCc---cCCCccEEEeCCccceec-c-CCC---Ch----hhHHHHHHHHHhcccCCcEEEEEec
Q 023703 149 CIKFLVDDVLDTK---LERQFQLVMDKGTLDAIG-L-HPD---GP----LKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 149 ~~~~~~~d~~~~~---~~~~fD~v~~~~~~~~~~-~-~~~---~~----~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
+..++++|+.+.. .+++||+|+++++|..-. . ... .. .-...++.++.++|||||.+++...
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 4578889988742 367899999999985310 0 000 00 1124677999999999999998643
No 327
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=93.07 E-value=0.27 Score=40.76 Aligned_cols=97 Identities=26% Similarity=0.378 Sum_probs=58.6
Q ss_pred cCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccC---CccCCCccEEE
Q 023703 97 YLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLD---TKLERQFQLVM 170 (278)
Q Consensus 97 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~---~~~~~~fD~v~ 170 (278)
..++.+||..|+|+ |..+..++.. | .+|++++.++...+.+++. +... +.....+... ....+.+|+++
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~d~vi 206 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKEL----GADHVIDYKEEDLEEELRLTGGGGADVVI 206 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHh----CCceeccCCcCCHHHHHHHhcCCCCCEEE
Confidence 36788999999986 5555556665 5 5899999998877777543 2111 1111111100 01135688888
Q ss_pred eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703 171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 211 (278)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 211 (278)
....-. ..+..+.+.|+++|.++.....
T Consensus 207 ~~~~~~-------------~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 207 DAVGGP-------------ETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred ECCCCH-------------HHHHHHHHhcccCCEEEEEccC
Confidence 642210 1236778889999999887543
No 328
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=93.00 E-value=0.17 Score=44.68 Aligned_cols=98 Identities=18% Similarity=0.202 Sum_probs=56.9
Q ss_pred ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCC---ccCCCccEE
Q 023703 96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDT---KLERQFQLV 169 (278)
Q Consensus 96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~---~~~~~fD~v 169 (278)
...++.+||-.|+|. |..+..+++. |..+|+++|.++.-.+.+++ .|... +.....|..+. ...+.+|++
T Consensus 188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~~~g~d~v 263 (371)
T cd08281 188 GVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELTGGGVDYA 263 (371)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHhCCCCCEE
Confidence 356788999888642 2334444554 65579999999998888865 33221 11111111110 012368888
Q ss_pred EeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 170 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
+..-.- ...+..+.+.|+++|.+++...
T Consensus 264 id~~G~-------------~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 264 FEMAGS-------------VPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred EECCCC-------------hHHHHHHHHHHhcCCEEEEEcc
Confidence 853211 1123667888999999987653
No 329
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=92.98 E-value=0.81 Score=35.43 Aligned_cols=105 Identities=12% Similarity=0.152 Sum_probs=66.8
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-----cCCCccEEEeC
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----LERQFQLVMDK 172 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----~~~~fD~v~~~ 172 (278)
....+|+-|||=+-...+.-......+++..|++...- ..+ ++ .|..-|..... ..++||+|+.+
T Consensus 24 ~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~--------~~~-~~-~F~fyD~~~p~~~~~~l~~~~d~vv~D 93 (162)
T PF10237_consen 24 LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFE--------QFG-GD-EFVFYDYNEPEELPEELKGKFDVVVID 93 (162)
T ss_pred CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHH--------hcC-Cc-ceEECCCCChhhhhhhcCCCceEEEEC
Confidence 34579999999875554444112234899999987543 222 23 46666666542 24789999999
Q ss_pred CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHH
Q 023703 173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH 219 (278)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 219 (278)
++| +. .+-.......++.++++++.++++++.....-+.+
T Consensus 94 PPF--l~-----~ec~~k~a~ti~~L~k~~~kii~~Tg~~~~~~~~~ 133 (162)
T PF10237_consen 94 PPF--LS-----EECLTKTAETIRLLLKPGGKIILCTGEEMEELIKK 133 (162)
T ss_pred CCC--CC-----HHHHHHHHHHHHHHhCccceEEEecHHHHHHHHHH
Confidence 998 21 22334555677777799999999876554443333
No 330
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=92.97 E-value=0.1 Score=38.30 Aligned_cols=64 Identities=23% Similarity=0.445 Sum_probs=38.5
Q ss_pred CCCCeEEEEecCCC-HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccC--CCccEEEeCC
Q 023703 98 LSSWSVLDIGTGNG-LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE--RQFQLVMDKG 173 (278)
Q Consensus 98 ~~~~~vLDiGcG~G-~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~--~~fD~v~~~~ 173 (278)
.+..+|+|+|-|.- ..+..|.++|+ .|+++|+.+. ++. ..+.++..|++++... ...|+|++-.
T Consensus 12 ~~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~-------~a~----~g~~~v~DDif~P~l~iY~~a~lIYSiR 78 (127)
T PF03686_consen 12 NNYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR-------KAP----EGVNFVVDDIFNPNLEIYEGADLIYSIR 78 (127)
T ss_dssp S-SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S---------------STTEE---SSS--HHHHTTEEEEEEES
T ss_pred CCCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc-------ccc----cCcceeeecccCCCHHHhcCCcEEEEeC
Confidence 34559999999987 46667777786 8999999988 111 2577899999987542 6789999743
No 331
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=92.27 E-value=0.65 Score=40.55 Aligned_cols=94 Identities=14% Similarity=0.071 Sum_probs=55.4
Q ss_pred cCCCCeEEEEecCCCH-HHHHHhh--CCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCC
Q 023703 97 YLSSWSVLDIGTGNGL-LLQELSK--QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKG 173 (278)
Q Consensus 97 ~~~~~~vLDiGcG~G~-~~~~l~~--~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~ 173 (278)
..++.+||-+|||.=. ++..+++ .|..+|+++|.++.-++.+++ .+. . ....+. .....+|+|+..-
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~--~-~~~~~~---~~~~g~d~viD~~ 230 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE--T-YLIDDI---PEDLAVDHAFECV 230 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc--e-eehhhh---hhccCCcEEEECC
Confidence 3568899999975422 3334444 245589999999988888764 211 1 111111 1112478887532
Q ss_pred ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
.- . .....+....++|++||++++...
T Consensus 231 G~------~----~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 231 GG------R----GSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred CC------C----ccHHHHHHHHHhCcCCcEEEEEee
Confidence 10 0 012234778899999999987653
No 332
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=92.21 E-value=0.42 Score=40.80 Aligned_cols=114 Identities=21% Similarity=0.239 Sum_probs=70.9
Q ss_pred CCCCeEEEEecCCCHHHHHHhhC-------CC--------------CcEEEEeCCh--HHHHHHHHHhhhC---------
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQ-------GF--------------SDLTGVDYSE--DAINLAQSLANRD--------- 145 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~-------~~--------------~~v~~~D~s~--~~i~~a~~~~~~~--------- 145 (278)
.+..+||-||-|.|.-...++.. .. -+++.+|+.+ ..++.....+...
T Consensus 85 ~~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~ 164 (315)
T PF11312_consen 85 KKSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASA 164 (315)
T ss_pred ccCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccc
Confidence 34579999999998544444321 00 1799999986 4556555544333
Q ss_pred ----CC----cceEEEEccccCCccCC--------CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 146 ----GF----SCIKFLVDDVLDTKLER--------QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 146 ----~~----~~~~~~~~d~~~~~~~~--------~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
.. -++.|.+.|+.....++ ..++|....+++-+. ........++|.++-..++||..|++++
T Consensus 165 ~~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELf--s~s~~kTt~FLl~Lt~~~~~GslLLVvD 242 (315)
T PF11312_consen 165 ANWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELF--STSISKTTKFLLRLTDICPPGSLLLVVD 242 (315)
T ss_pred cccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHH--hcChHHHHHHHHHHHhhcCCCcEEEEEc
Confidence 00 14788999998764321 234444333332221 1223466789999999999999999987
Q ss_pred cCCC
Q 023703 210 CNST 213 (278)
Q Consensus 210 ~~~~ 213 (278)
....
T Consensus 243 SpGS 246 (315)
T PF11312_consen 243 SPGS 246 (315)
T ss_pred CCCC
Confidence 5443
No 333
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=92.09 E-value=1 Score=39.10 Aligned_cols=92 Identities=14% Similarity=0.055 Sum_probs=55.8
Q ss_pred ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCC
Q 023703 96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKG 173 (278)
Q Consensus 96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~ 173 (278)
+..++.+||-.|+|. |..+..+++. |. +|++++.++.-.+.+++ .|...+ +. ..+. ..+.+|+++...
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~----~Ga~~v--i~--~~~~-~~~~~d~~i~~~ 231 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALA----LGAASA--GG--AYDT-PPEPLDAAILFA 231 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----hCCcee--cc--cccc-CcccceEEEECC
Confidence 456788999999742 2344445554 65 79999999988877766 343221 11 1111 123577665321
Q ss_pred ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
.. ...+....++|++||++++...
T Consensus 232 ~~-------------~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 232 PA-------------GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred Cc-------------HHHHHHHHHhhCCCcEEEEEec
Confidence 11 1134778899999999988654
No 334
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=92.00 E-value=1.1 Score=37.49 Aligned_cols=96 Identities=22% Similarity=0.235 Sum_probs=56.0
Q ss_pred cccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeC
Q 023703 95 DKYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDK 172 (278)
Q Consensus 95 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~ 172 (278)
.+..++.+||-.|||. |..+..+++. |..+|++++.++...+.+++.-. ...+..... .......+|+++..
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~---~~~~~~~~~---~~~~~~~~d~vl~~ 166 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGP---ADPVAADTA---DEIGGRGADVVIEA 166 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCC---Cccccccch---hhhcCCCCCEEEEc
Confidence 3456778899888754 4455555555 65349999999888876665310 111110000 01123458888753
Q ss_pred CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
... ...+....+.|+++|.++...
T Consensus 167 ~~~-------------~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 167 SGS-------------PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred cCC-------------hHHHHHHHHHhcCCcEEEEEe
Confidence 111 112367788899999998764
No 335
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.99 E-value=3.9 Score=33.24 Aligned_cols=108 Identities=14% Similarity=0.078 Sum_probs=61.8
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 164 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~ 164 (278)
++++||-.|++.| .++..+++.|+ +|++++-++...+.+.+..... .++.++.+|+.+... -+
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKY--GNIHYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc--CCeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 4568999998654 23334455576 8999999988776654444332 257888999886421 13
Q ss_pred CccEEEeCCcccee-ccCCC---------ChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 165 QFQLVMDKGTLDAI-GLHPD---------GPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 165 ~fD~v~~~~~~~~~-~~~~~---------~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
+.|.++.+...... ..... .......+++.+.+.++++|.+++.+
T Consensus 81 ~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 81 AIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred CCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 46777765432110 00000 00011233456666777888877765
No 336
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=91.90 E-value=0.28 Score=41.47 Aligned_cols=95 Identities=20% Similarity=0.203 Sum_probs=54.5
Q ss_pred CCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccc----cCCccCCCccEEEe
Q 023703 98 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV----LDTKLERQFQLVMD 171 (278)
Q Consensus 98 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~----~~~~~~~~fD~v~~ 171 (278)
.++.+||-+|+|. |..+..+++. |..+|+++|.++.-.+.+++ .|...+ +...+. ........+|+++.
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~-i~~~~~~~~~~~~~~~~g~d~vid 193 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGATAL-AEPEVLAERQGGLQNGRGVDVALE 193 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCcEe-cCchhhHHHHHHHhCCCCCCEEEE
Confidence 4678999887642 2233344444 66459999999988877765 332211 100111 00111235888875
Q ss_pred CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
...- ...++.+.+.|+|+|++++...
T Consensus 194 ~~G~-------------~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 194 FSGA-------------TAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred CCCC-------------hHHHHHHHHHhcCCCEEEEecc
Confidence 3210 1123678889999999988753
No 337
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=91.87 E-value=0.83 Score=36.16 Aligned_cols=101 Identities=16% Similarity=0.227 Sum_probs=66.9
Q ss_pred CCCeEEEEecCCCHHHHHHhhC----C-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-------CCCc
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQ----G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-------ERQF 166 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~----~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-------~~~f 166 (278)
++..|+++|.-.|..++..|.. | ..+|+++|++-...+-+... .+++.|+.++-.++.. ...|
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~i~f~egss~dpai~eqi~~~~~~y 143 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPDILFIEGSSTDPAIAEQIRRLKNEY 143 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCCeEEEeCCCCCHHHHHHHHHHhcCC
Confidence 4569999999999887777664 4 23899999997765544332 3689999999887631 1222
Q ss_pred cEEE-eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703 167 QLVM-DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 211 (278)
Q Consensus 167 D~v~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 211 (278)
--|+ +-.+-++. +...+-++-...+|.-|-.+++.+.+
T Consensus 144 ~kIfvilDsdHs~-------~hvLAel~~~~pllsaG~Y~vVeDs~ 182 (237)
T COG3510 144 PKIFVILDSDHSM-------EHVLAELKLLAPLLSAGDYLVVEDSN 182 (237)
T ss_pred CcEEEEecCCchH-------HHHHHHHHHhhhHhhcCceEEEeccc
Confidence 2222 22222222 25566667888899999998887543
No 338
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=91.59 E-value=2.6 Score=34.03 Aligned_cols=83 Identities=11% Similarity=0.138 Sum_probs=52.8
Q ss_pred chhhhccccCCCCeEEEEecCCC----HHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccC-C
Q 023703 89 EPVEENDKYLSSWSVLDIGTGNG----LLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLD-T 160 (278)
Q Consensus 89 ~~~~~~~~~~~~~~vLDiGcG~G----~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~-~ 160 (278)
+++..+..-...+.|++..|+.| .+++..|.+ | .++++|-..+......++.+...++.+ ++|+.++..+ .
T Consensus 31 EfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~Tg-GR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~ 109 (218)
T PF07279_consen 31 EFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTG-GRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEV 109 (218)
T ss_pred HHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcC-CeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHH
Confidence 34444444445568999976644 334444444 4 379999999888888888887777655 6888888543 2
Q ss_pred c-cCCCccEEEeC
Q 023703 161 K-LERQFQLVMDK 172 (278)
Q Consensus 161 ~-~~~~fD~v~~~ 172 (278)
. .-...|+++.+
T Consensus 110 ~~~~~~iDF~vVD 122 (218)
T PF07279_consen 110 MPGLKGIDFVVVD 122 (218)
T ss_pred HhhccCCCEEEEe
Confidence 2 12457776643
No 339
>PRK06701 short chain dehydrogenase; Provisional
Probab=91.51 E-value=4 Score=34.69 Aligned_cols=109 Identities=15% Similarity=0.181 Sum_probs=62.5
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCCh-HHHHHHHHHhhhCCCcceEEEEccccCCcc-----------C
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSE-DAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 163 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~-~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~ 163 (278)
++++||-.|++.| .++..++++|+ +|+.++.++ ...+.....++..+ .++.++.+|+.+... -
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEG-VKCLLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4678888887655 34555666675 788888764 33333333343333 357788999876421 1
Q ss_pred CCccEEEeCCcccee--ccCCCC-----------hhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 164 RQFQLVMDKGTLDAI--GLHPDG-----------PLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 164 ~~fD~v~~~~~~~~~--~~~~~~-----------~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
++.|+++.+...... .+.... ......+++.+.+.++++|.+++.+
T Consensus 123 ~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 123 GRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred CCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 467888866543211 011111 1122445566677777778777654
No 340
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=91.28 E-value=1.9 Score=37.22 Aligned_cols=96 Identities=25% Similarity=0.305 Sum_probs=56.7
Q ss_pred cccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccC-----CccCCCcc
Q 023703 95 DKYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD-----TKLERQFQ 167 (278)
Q Consensus 95 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~-----~~~~~~fD 167 (278)
.+..++.+||-+|+|. |..+..+++. |...+++++.++...+.+++. +.. .++..+-.+ ......+|
T Consensus 155 ~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~--~~~~~~~~~~~~~~~~~~~~vd 228 (334)
T cd08234 155 LGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----GAT--ETVDPSREDPEAQKEDNPYGFD 228 (334)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCe--EEecCCCCCHHHHHHhcCCCCc
Confidence 3456778999998642 4444555555 653489999998887777542 222 222211111 01235688
Q ss_pred EEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
+++..-.. ...+..+.+.|+++|.++...
T Consensus 229 ~v~~~~~~-------------~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 229 VVIEATGV-------------PKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred EEEECCCC-------------hHHHHHHHHHHhcCCEEEEEe
Confidence 88863211 123367788999999998764
No 341
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=90.95 E-value=3.2 Score=32.69 Aligned_cols=107 Identities=21% Similarity=0.354 Sum_probs=65.1
Q ss_pred eEEEEecCCC--HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhh-------CC-C---------cceEEEEccccCCcc
Q 023703 102 SVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLANR-------DG-F---------SCIKFLVDDVLDTKL 162 (278)
Q Consensus 102 ~vLDiGcG~G--~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~-------~~-~---------~~~~~~~~d~~~~~~ 162 (278)
+|.-+|+|+= .++..++..|. +|+.+|.+++.++.+++.+.. .+ + .++. ...|+.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~-- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA-- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG--
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH--
Confidence 3556777654 34455566676 899999999999988877654 11 1 1232 23444332
Q ss_pred CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHH
Q 023703 163 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV 221 (278)
Q Consensus 163 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 221 (278)
...|+|+.. + +++......+++++.+++.|+.+|...+.+.+..++...+
T Consensus 77 -~~adlViEa-----i---~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~ 126 (180)
T PF02737_consen 77 -VDADLVIEA-----I---PEDLELKQELFAELDEICPPDTILASNTSSLSISELAAAL 126 (180)
T ss_dssp -CTESEEEE------S----SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTS
T ss_pred -hhhheehhh-----c---cccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhcc
Confidence 256788753 2 2334466788899999999999988888877777666544
No 342
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=90.80 E-value=2.6 Score=32.81 Aligned_cols=107 Identities=15% Similarity=0.163 Sum_probs=63.9
Q ss_pred EecCCCHHHHHHhhC-C-CCcEEEEeCChH--HHHHH---HHHhhhCCCcce-EEEEccccCCc-----cCCCccEEEeC
Q 023703 106 IGTGNGLLLQELSKQ-G-FSDLTGVDYSED--AINLA---QSLANRDGFSCI-KFLVDDVLDTK-----LERQFQLVMDK 172 (278)
Q Consensus 106 iGcG~G~~~~~l~~~-~-~~~v~~~D~s~~--~i~~a---~~~~~~~~~~~~-~~~~~d~~~~~-----~~~~fD~v~~~ 172 (278)
+|=|.=.++..|+.. + ..+++++-+... ..+.- ..++....-.++ -....|+.++. ...+||.|+-|
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 566666788888887 4 446777655543 33222 233333211122 33556776653 24789999987
Q ss_pred CccceeccCC-CC-------hhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703 173 GTLDAIGLHP-DG-------PLKRIMYWDSVSKLVAPGGLLVITSCNSTK 214 (278)
Q Consensus 173 ~~~~~~~~~~-~~-------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 214 (278)
.|-.. ... .. ..-...+++.+.++|+++|.+.++......
T Consensus 83 FPH~G--~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p 130 (166)
T PF10354_consen 83 FPHVG--GGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP 130 (166)
T ss_pred CCCCC--CCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC
Confidence 66322 111 00 123358889999999999999999766654
No 343
>PRK08265 short chain dehydrogenase; Provisional
Probab=90.72 E-value=6.3 Score=32.74 Aligned_cols=71 Identities=14% Similarity=0.179 Sum_probs=46.9
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 164 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~ 164 (278)
.++++|-.|++.| .++..+++.|+ +|+.+|.++...+...+.. + .++.++.+|+.+... .+
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 79 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASL---G-ERARFIATDITDDAAIERAVATVVARFG 79 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---C-CeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 4568888886555 34455666676 8999999876555443322 2 357888999987521 14
Q ss_pred CccEEEeCCc
Q 023703 165 QFQLVMDKGT 174 (278)
Q Consensus 165 ~fD~v~~~~~ 174 (278)
+.|+++.+..
T Consensus 80 ~id~lv~~ag 89 (261)
T PRK08265 80 RVDILVNLAC 89 (261)
T ss_pred CCCEEEECCC
Confidence 6898887654
No 344
>PLN02740 Alcohol dehydrogenase-like
Probab=90.67 E-value=1.2 Score=39.45 Aligned_cols=97 Identities=20% Similarity=0.237 Sum_probs=55.8
Q ss_pred cccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEcc-----ccCC---ccCC
Q 023703 95 DKYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDD-----VLDT---KLER 164 (278)
Q Consensus 95 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d-----~~~~---~~~~ 164 (278)
....++.+||-+|||. |..+..+++. |..+|+++|.++.-++.+++ .|.+. ++... ..+. ...+
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~--~i~~~~~~~~~~~~v~~~~~~ 267 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE----MGITD--FINPKDSDKPVHERIREMTGG 267 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----cCCcE--EEecccccchHHHHHHHHhCC
Confidence 3456788999998742 1233344444 65479999999998888865 33322 22111 1110 0122
Q ss_pred CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCC-cEEEEEec
Q 023703 165 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPG-GLLVITSC 210 (278)
Q Consensus 165 ~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 210 (278)
.+|+++....- ...+......+++| |++++...
T Consensus 268 g~dvvid~~G~-------------~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 268 GVDYSFECAGN-------------VEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred CCCEEEECCCC-------------hHHHHHHHHhhhcCCCEEEEEcc
Confidence 68888863221 11236677788886 98877643
No 345
>PRK07806 short chain dehydrogenase; Provisional
Probab=90.32 E-value=7.7 Score=31.72 Aligned_cols=109 Identities=11% Similarity=0.047 Sum_probs=59.5
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCCh-HHHHHHHHHhhhCCCcceEEEEccccCCcc-----C------
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSE-DAINLAQSLANRDGFSCIKFLVDDVLDTKL-----E------ 163 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~-~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----~------ 163 (278)
+++++|-.|+..| .+...++..|+ +|++++.+. ...+.....++..+ .++.++.+|+.+... .
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAG-GRASAVGADLTDEESVAALMDTAREEF 82 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 4568998887544 23334455675 788887654 33343333333333 357788899887421 1
Q ss_pred CCccEEEeCCccceec-cCC-----CChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 164 RQFQLVMDKGTLDAIG-LHP-----DGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 164 ~~fD~v~~~~~~~~~~-~~~-----~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
+..|+++.+....... ..+ .+......+++.+.+.++.+|.+++.+
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 3578888665321100 000 111123455677777776677766654
No 346
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=90.26 E-value=1.6 Score=37.99 Aligned_cols=98 Identities=21% Similarity=0.242 Sum_probs=63.0
Q ss_pred cccCCCCeEEEEecCC--CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCc----cCCCc
Q 023703 95 DKYLSSWSVLDIGTGN--GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTK----LERQF 166 (278)
Q Consensus 95 ~~~~~~~~vLDiGcG~--G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~----~~~~f 166 (278)
.+.+++.+||-.|... |.++..|++. |. .++++--+++-.+.+++ .|.+. +.+...|+.+.. ....+
T Consensus 138 ~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~----lGAd~vi~y~~~~~~~~v~~~t~g~gv 212 (326)
T COG0604 138 AGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKE----LGADHVINYREEDFVEQVRELTGGKGV 212 (326)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHh----cCCCEEEcCCcccHHHHHHHHcCCCCc
Confidence 3457789999999644 4778888887 65 67777777766665554 33222 344444443321 12469
Q ss_pred cEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703 167 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 211 (278)
Q Consensus 167 D~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 211 (278)
|+|+..-.- ..+....+.|+++|+++.....
T Consensus 213 Dvv~D~vG~--------------~~~~~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 213 DVVLDTVGG--------------DTFAASLAALAPGGRLVSIGAL 243 (326)
T ss_pred eEEEECCCH--------------HHHHHHHHHhccCCEEEEEecC
Confidence 999863221 2236688889999999887543
No 347
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.24 E-value=3.6 Score=35.08 Aligned_cols=108 Identities=17% Similarity=0.238 Sum_probs=61.1
Q ss_pred CeEEEEecCCC--HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC----------CC----------cceEEEEcccc
Q 023703 101 WSVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD----------GF----------SCIKFLVDDVL 158 (278)
Q Consensus 101 ~~vLDiGcG~G--~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~----------~~----------~~~~~~~~d~~ 158 (278)
.+|.=||+|.= .++..++..|. +|+.+|.++..++.+++..... +. .++.+ ..|..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~~ 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT-STSYE 81 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe-eCCHH
Confidence 36888898843 45556666776 8999999999998776543321 10 00111 11111
Q ss_pred CCccCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHH
Q 023703 159 DTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV 221 (278)
Q Consensus 159 ~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 221 (278)
.-...|+|+.. + ++.......+++++.+.++|+.+++..+......++...+
T Consensus 82 ---~~~~aDlViea-----v---~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~ 133 (291)
T PRK06035 82 ---SLSDADFIVEA-----V---PEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATAL 133 (291)
T ss_pred ---HhCCCCEEEEc-----C---cCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhc
Confidence 11345777753 2 1222234566788888888887665444444445444433
No 348
>PRK12939 short chain dehydrogenase; Provisional
Probab=90.22 E-value=4.5 Score=33.10 Aligned_cols=73 Identities=11% Similarity=0.034 Sum_probs=47.4
Q ss_pred CCCeEEEEecCCCHHHHHH----hhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------C
Q 023703 99 SSWSVLDIGTGNGLLLQEL----SKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 163 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l----~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~ 163 (278)
+++++|=.|+ +|.++..+ +++|+ +|++++.++..++...+.++..+ .++.++.+|+.+... -
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAG-GRAHAIAADLADPASVQRFFDAAAAAL 82 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4568887775 44444444 44575 79999988876666555554433 368888999987421 1
Q ss_pred CCccEEEeCCc
Q 023703 164 RQFQLVMDKGT 174 (278)
Q Consensus 164 ~~fD~v~~~~~ 174 (278)
++.|+++.+..
T Consensus 83 ~~id~vi~~ag 93 (250)
T PRK12939 83 GGLDGLVNNAG 93 (250)
T ss_pred CCCCEEEECCC
Confidence 46888886643
No 349
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=90.20 E-value=0.57 Score=40.91 Aligned_cols=97 Identities=21% Similarity=0.267 Sum_probs=53.6
Q ss_pred ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEcccc---CCccCCCcc-E
Q 023703 96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVL---DTKLERQFQ-L 168 (278)
Q Consensus 96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~---~~~~~~~fD-~ 168 (278)
...++.+||-.|||. |..+..+++. |...|++++.++...+.+++ .|... +.....+.. .......+| +
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~ 232 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAMQTFNSREMSAPQIQSVLRELRFDQL 232 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCceEecCcccCHHHHHHHhcCCCCCeE
Confidence 345778999988643 2233344444 65458999999988877754 23211 111111100 011123566 5
Q ss_pred EEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 169 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 169 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
++.. .. . ...+....+.|++||.+++..
T Consensus 233 v~d~-----~G-------~-~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 233 ILET-----AG-------V-PQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred EEEC-----CC-------C-HHHHHHHHHHhhcCCEEEEEc
Confidence 5532 11 1 123477889999999998875
No 350
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=90.16 E-value=0.57 Score=40.67 Aligned_cols=98 Identities=26% Similarity=0.247 Sum_probs=55.0
Q ss_pred ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccc---cCCccCCCccEE
Q 023703 96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDV---LDTKLERQFQLV 169 (278)
Q Consensus 96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~---~~~~~~~~fD~v 169 (278)
...++.+||-+|+|. |..+..+++. |..+|++++.++...+.+++ .|... +.....+. .+......+|++
T Consensus 160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~~d~v 235 (339)
T cd08239 160 GVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA----LGADFVINSGQDDVQEIRELTSGAGADVA 235 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcchHHHHHHHhCCCCCCEE
Confidence 345688999987642 1233334444 65449999999988877754 23221 11111110 011112368988
Q ss_pred EeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 170 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
+....- ...+....+.|+++|.+++...
T Consensus 236 id~~g~-------------~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 236 IECSGN-------------TAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred EECCCC-------------HHHHHHHHHHhhcCCEEEEEcC
Confidence 853211 1122567788999999987653
No 351
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.15 E-value=2.5 Score=35.96 Aligned_cols=107 Identities=13% Similarity=0.150 Sum_probs=60.8
Q ss_pred eEEEEecCCC--HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC-------C-C---------cceEEEEccccCCcc
Q 023703 102 SVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-------G-F---------SCIKFLVDDVLDTKL 162 (278)
Q Consensus 102 ~vLDiGcG~G--~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~-------~-~---------~~~~~~~~d~~~~~~ 162 (278)
+|.=||+|.= .++..++..|+ +|+.+|.++..++.+.++.... + + .++. ...|..+ .
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~~~--~ 78 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLS-YSLDLKA--A 78 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE-EeCcHHH--h
Confidence 6778888742 34555666676 7999999999999887643211 0 0 0111 1122211 1
Q ss_pred CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHH
Q 023703 163 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHE 220 (278)
Q Consensus 163 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 220 (278)
-...|+|+..-+ .+......++.++.+.++|+.++...+.+.+...+.+.
T Consensus 79 ~~~aD~Vi~avp--------e~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~ 128 (288)
T PRK09260 79 VADADLVIEAVP--------EKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASF 128 (288)
T ss_pred hcCCCEEEEecc--------CCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhh
Confidence 134577775321 22223345667788888888776666555555554443
No 352
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=90.13 E-value=1.4 Score=38.29 Aligned_cols=98 Identities=19% Similarity=0.285 Sum_probs=57.3
Q ss_pred cccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEcc-------ccCCccCC
Q 023703 95 DKYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDD-------VLDTKLER 164 (278)
Q Consensus 95 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d-------~~~~~~~~ 164 (278)
....++.+||-.|+|. |..+..+++. |...|+.++.++...+.+++. +... +.....+ +.......
T Consensus 158 ~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~~~~~~~~~ 233 (343)
T cd05285 158 AGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GATHTVNVRTEDTPESAEKIAELLGGK 233 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCcEEeccccccchhHHHHHHHHhCCC
Confidence 4456788888877654 4555556665 653489998888877776542 3222 1111111 11111234
Q ss_pred CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 165 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 165 ~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
.+|+++..... ...+....+.|+++|+++...
T Consensus 234 ~~d~vld~~g~-------------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 234 GPDVVIECTGA-------------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCCEEEECCCC-------------HHHHHHHHHHhhcCCEEEEEc
Confidence 58998864221 112367888999999988764
No 353
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=90.00 E-value=2.3 Score=35.23 Aligned_cols=118 Identities=12% Similarity=0.102 Sum_probs=65.8
Q ss_pred hhhccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC-----ccCCC
Q 023703 91 VEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-----KLERQ 165 (278)
Q Consensus 91 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~-----~~~~~ 165 (278)
+..+...+++.. |..=.|+=.++..+.+.. .+.+.+|+-+.-.+..++++... .++.++..|..+. ++..+
T Consensus 50 l~~v~~~n~~~~-l~~YPGSP~ia~~llR~q-Drl~l~ELHp~d~~~L~~~~~~~--~~v~v~~~DG~~~l~allPP~~r 125 (245)
T PF04378_consen 50 LDAVRALNPDGE-LRFYPGSPAIAARLLREQ-DRLVLFELHPQDFEALKKNFRRD--RRVRVHHRDGYEGLKALLPPPER 125 (245)
T ss_dssp HHHHHHHSSSSS---EEE-HHHHHHHHS-TT-SEEEEE--SHHHHHHHTTS--TT--S-EEEE-S-HHHHHHHH-S-TTS
T ss_pred HHHHHHhccCCC-cCcCCCCHHHHHHhCCcc-ceEEEEecCchHHHHHHHHhccC--CccEEEeCchhhhhhhhCCCCCC
Confidence 333333334333 677778778888888775 58999999999999998887653 4799999998763 34455
Q ss_pred ccEEEeCCccceeccCCCChhhHHHHHHHHHhccc--CCcEEEEEecCCChHHHHH
Q 023703 166 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVA--PGGLLVITSCNSTKDELVH 219 (278)
Q Consensus 166 fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk--pgG~l~~~~~~~~~~~~~~ 219 (278)
=-+|+..++|+.-. +...+...+.+.+| |.|++++=-+-........
T Consensus 126 RglVLIDPpYE~~~-------dy~~v~~~l~~a~kR~~~G~~~iWYPi~~~~~~~~ 174 (245)
T PF04378_consen 126 RGLVLIDPPYEQKD-------DYQRVVDALAKALKRWPTGVYAIWYPIKDRERVDR 174 (245)
T ss_dssp -EEEEE-----STT-------HHHHHHHHHHHHHHH-TTSEEEEEEEESSHHHHHH
T ss_pred CeEEEECCCCCCch-------HHHHHHHHHHHHHHhcCCcEEEEEeecccHHHHHH
Confidence 56888888876332 45445555555554 7888777666555544333
No 354
>PRK07109 short chain dehydrogenase; Provisional
Probab=89.90 E-value=5.9 Score=34.49 Aligned_cols=75 Identities=13% Similarity=0.178 Sum_probs=51.7
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 164 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~ 164 (278)
++++||-.|++.| .++..+++.|+ +|+.++.++..++...+.+...+ .++.++.+|+.+... -+
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g-~~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAG-GEALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcC-CcEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 4567888887555 23445566676 79999999888777766665555 357788999877421 24
Q ss_pred CccEEEeCCcc
Q 023703 165 QFQLVMDKGTL 175 (278)
Q Consensus 165 ~fD~v~~~~~~ 175 (278)
+.|+++.+...
T Consensus 85 ~iD~lInnAg~ 95 (334)
T PRK07109 85 PIDTWVNNAMV 95 (334)
T ss_pred CCCEEEECCCc
Confidence 78998877543
No 355
>PRK08324 short chain dehydrogenase; Validated
Probab=89.86 E-value=4 Score=39.43 Aligned_cols=108 Identities=16% Similarity=0.181 Sum_probs=63.8
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 164 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~ 164 (278)
++++||-.|++.| .++..+++.|. +|+.+|.++...+.+...+... .++.++.+|+.+... .+
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~--~~v~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGP--DRALGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhcc--CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 5678888886544 23344555676 8999999988777665544332 357888899876421 24
Q ss_pred CccEEEeCCccceec-cCCCChh-----------hHHHHHHHHHhcccC---CcEEEEEe
Q 023703 165 QFQLVMDKGTLDAIG-LHPDGPL-----------KRIMYWDSVSKLVAP---GGLLVITS 209 (278)
Q Consensus 165 ~fD~v~~~~~~~~~~-~~~~~~~-----------~~~~~l~~~~~~Lkp---gG~l~~~~ 209 (278)
++|+++.+....... +...... ....+++.+.+.+++ +|.+++.+
T Consensus 498 ~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 498 GVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 689998765432110 0000111 123445666666665 67777654
No 356
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.70 E-value=2 Score=36.48 Aligned_cols=107 Identities=19% Similarity=0.277 Sum_probs=62.7
Q ss_pred eEEEEecCC--CHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhh-------hCCC-c---------ceEEEEccccCCcc
Q 023703 102 SVLDIGTGN--GLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN-------RDGF-S---------CIKFLVDDVLDTKL 162 (278)
Q Consensus 102 ~vLDiGcG~--G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~-------~~~~-~---------~~~~~~~d~~~~~~ 162 (278)
+|.=||+|. +.++..++..|. +|+++|.++..++.+++++. ..+. . ++.+ ..|...
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~--- 79 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD--- 79 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH---
Confidence 577788874 355566667776 89999999999876654322 2221 0 1111 222211
Q ss_pred CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHH
Q 023703 163 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV 221 (278)
Q Consensus 163 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 221 (278)
-...|+|+..- ++.......+++++.+.++|+..+...+...+...+...+
T Consensus 80 ~~~aDlVi~av--------~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~ 130 (282)
T PRK05808 80 LKDADLVIEAA--------TENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAAT 130 (282)
T ss_pred hccCCeeeecc--------cccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhh
Confidence 23467777531 1222234577788999999988775555555555554443
No 357
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=89.68 E-value=1.6 Score=38.15 Aligned_cols=97 Identities=19% Similarity=0.248 Sum_probs=56.0
Q ss_pred ccCCCCeEEEEecC-CCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccC----CccCCCccE
Q 023703 96 KYLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLD----TKLERQFQL 168 (278)
Q Consensus 96 ~~~~~~~vLDiGcG-~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~----~~~~~~fD~ 168 (278)
...++.+||-.|+| .|..+..+++. |...++++|.++...+.+++ .|... +.....+... ......+|+
T Consensus 163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~~~d~ 238 (351)
T cd08285 163 NIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLTGGKGVDA 238 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHhCCCCCcE
Confidence 45677889988764 22344445554 66569999999887777764 33221 1111111111 111245888
Q ss_pred EEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 169 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 169 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
++....- ...+..+.++|+++|+++...
T Consensus 239 vld~~g~-------------~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 239 VIIAGGG-------------QDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred EEECCCC-------------HHHHHHHHHHhhcCCEEEEec
Confidence 8853110 123377888899999988754
No 358
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=89.63 E-value=1.1 Score=39.27 Aligned_cols=96 Identities=17% Similarity=0.175 Sum_probs=58.9
Q ss_pred ccCCCCeEEEEec--CCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEc-cccCC---ccCCCcc
Q 023703 96 KYLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVD-DVLDT---KLERQFQ 167 (278)
Q Consensus 96 ~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~-d~~~~---~~~~~fD 167 (278)
...++.+||-.|+ |.|..+..+++. |. +|++++.++.-.+.+++. .|... +..... +..+. ...+.+|
T Consensus 155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~~~gvD 230 (348)
T PLN03154 155 SPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKNK---LGFDEAFNYKEEPDLDAALKRYFPEGID 230 (348)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHh---cCCCEEEECCCcccHHHHHHHHCCCCcE
Confidence 4567889999998 356677777776 65 799999998877776532 23322 111111 11110 0123588
Q ss_pred EEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
+++..-. . ..+..+.++|+++|++++..
T Consensus 231 ~v~d~vG------------~--~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 231 IYFDNVG------------G--DMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred EEEECCC------------H--HHHHHHHHHhccCCEEEEEC
Confidence 8875311 1 13367888999999998764
No 359
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=89.61 E-value=1 Score=40.03 Aligned_cols=63 Identities=13% Similarity=0.255 Sum_probs=51.3
Q ss_pred CCcceEEEEccccCCc---cCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703 146 GFSCIKFLVDDVLDTK---LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 213 (278)
Q Consensus 146 ~~~~~~~~~~d~~~~~---~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 213 (278)
++++++++.+++.+.. +++++|.++....+|++. +......++++.+.++|||++++-+...+
T Consensus 273 ~~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~-----~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 273 RLDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMD-----PEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred CCCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCC-----HHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 4467999999998853 368999999888877775 56778888999999999999999875543
No 360
>PRK08589 short chain dehydrogenase; Validated
Probab=89.60 E-value=9.1 Score=32.04 Aligned_cols=74 Identities=15% Similarity=0.201 Sum_probs=48.3
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 164 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~ 164 (278)
+++++|-.|++.| .++..+++.|+ +|+.++.+ ..++...+.+...+ .++.++.+|+.+... .+
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~-~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIA-EAVSETVDKIKSNG-GKAKAYHVDISDEQQVKDFASEIKEQFG 81 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCc-HHHHHHHHHHHhcC-CeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 4668888888766 34555666775 89999988 44444433343333 257788899877521 25
Q ss_pred CccEEEeCCcc
Q 023703 165 QFQLVMDKGTL 175 (278)
Q Consensus 165 ~fD~v~~~~~~ 175 (278)
+.|+++.+..+
T Consensus 82 ~id~li~~Ag~ 92 (272)
T PRK08589 82 RVDVLFNNAGV 92 (272)
T ss_pred CcCEEEECCCC
Confidence 68999887654
No 361
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.29 E-value=11 Score=31.19 Aligned_cols=74 Identities=16% Similarity=0.132 Sum_probs=46.0
Q ss_pred CCCeEEEEecCC--C---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-----------c
Q 023703 99 SSWSVLDIGTGN--G---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----------L 162 (278)
Q Consensus 99 ~~~~vLDiGcG~--G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----------~ 162 (278)
.++++|-.|+++ | .++..+++.|+ +|+.++.++...+.+++..+.. ..+.++.+|+.+.. .
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~ 85 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEEL--DAPIFLPLDVREPGQLEAVFARIAEE 85 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhh--ccceEEecCcCCHHHHHHHHHHHHHH
Confidence 467899999875 3 34445566675 7888888865443333332222 23456788887642 0
Q ss_pred CCCccEEEeCCcc
Q 023703 163 ERQFQLVMDKGTL 175 (278)
Q Consensus 163 ~~~fD~v~~~~~~ 175 (278)
.++.|+++.+..+
T Consensus 86 ~g~ld~lv~nAg~ 98 (258)
T PRK07533 86 WGRLDFLLHSIAF 98 (258)
T ss_pred cCCCCEEEEcCcc
Confidence 2578999987644
No 362
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=89.29 E-value=0.62 Score=40.47 Aligned_cols=97 Identities=22% Similarity=0.289 Sum_probs=55.6
Q ss_pred ccCCCCeEEEEecC-CCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccC----CccCCCccE
Q 023703 96 KYLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLD----TKLERQFQL 168 (278)
Q Consensus 96 ~~~~~~~vLDiGcG-~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~----~~~~~~fD~ 168 (278)
+..++.+||..|+| .|..+..+++. |...+++++.++...+.+++. +... +.....+..+ ....+.+|+
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~i~~~~~~~~~d~ 239 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GATDIINPKNGDIVEQILELTGGRGVDC 239 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CCcEEEcCCcchHHHHHHHHcCCCCCcE
Confidence 44677888887654 24455556665 544788998888777766542 2111 1111111111 112256888
Q ss_pred EEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 169 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 169 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
++..-.. ...+..+.+.|+++|+++...
T Consensus 240 vld~~g~-------------~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 240 VIEAVGF-------------EETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred EEEccCC-------------HHHHHHHHHHhhcCCEEEEEc
Confidence 8853111 123477888999999988654
No 363
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=89.28 E-value=2.4 Score=36.48 Aligned_cols=95 Identities=17% Similarity=0.142 Sum_probs=56.0
Q ss_pred ccCCCCeEEEEecC-CCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcce-EEEEccccCCccCCCccEEEeC
Q 023703 96 KYLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDDVLDTKLERQFQLVMDK 172 (278)
Q Consensus 96 ~~~~~~~vLDiGcG-~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~-~~~~~d~~~~~~~~~fD~v~~~ 172 (278)
...++.+||-.||| .|..+..+++. |. +|++++.++...+.+++. +...+ .....+.... ..+.+|+++..
T Consensus 159 ~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~-~~~~~d~vi~~ 232 (330)
T cd08245 159 GPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKL----GADEVVDSGAELDEQA-AAGGADVILVT 232 (330)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHh----CCcEEeccCCcchHHh-ccCCCCEEEEC
Confidence 44677889999886 55555555655 65 799999999888777442 21111 1100011000 12457888753
Q ss_pred CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
..- ...+..+.+.|+++|.++...
T Consensus 233 ~~~-------------~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 233 VVS-------------GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred CCc-------------HHHHHHHHHhcccCCEEEEEC
Confidence 110 112367788999999998764
No 364
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.21 E-value=4 Score=35.42 Aligned_cols=109 Identities=11% Similarity=0.223 Sum_probs=64.1
Q ss_pred CeEEEEecCCC--HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhh-------CCCc------ceEEEEccccCCccCCC
Q 023703 101 WSVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLANR-------DGFS------CIKFLVDDVLDTKLERQ 165 (278)
Q Consensus 101 ~~vLDiGcG~G--~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~-------~~~~------~~~~~~~d~~~~~~~~~ 165 (278)
.+|.-||+|+= .++..++..|+ +|+..|.++..++.++..+.. .+.. ++.+. .|+.+ .-..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~--av~~ 83 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEA--CVAD 83 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHH--HhcC
Confidence 47888999843 45556677786 899999999988876654331 1110 11111 11110 1134
Q ss_pred ccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHH
Q 023703 166 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV 221 (278)
Q Consensus 166 fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 221 (278)
.|+|+..- +++..-...+++++.+.++|+.++...+......++...+
T Consensus 84 aDlViEav--------pE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~ 131 (321)
T PRK07066 84 ADFIQESA--------PEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARA 131 (321)
T ss_pred CCEEEECC--------cCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhc
Confidence 67777632 2333345567789999999988555555544445555433
No 365
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=89.14 E-value=2.7 Score=39.94 Aligned_cols=97 Identities=13% Similarity=0.136 Sum_probs=59.8
Q ss_pred CeEEEEecCCCHHHHHHhh----CCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----CCCccEEEe
Q 023703 101 WSVLDIGTGNGLLLQELSK----QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVMD 171 (278)
Q Consensus 101 ~~vLDiGcG~G~~~~~l~~----~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----~~~fD~v~~ 171 (278)
.+|+=+|+ |.++..+++ ++. +++.+|.+++.++.+++ . ....+.+|..+... -++.|.++.
T Consensus 401 ~~vII~G~--Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~----~---g~~v~~GDat~~~~L~~agi~~A~~vv~ 470 (601)
T PRK03659 401 PQVIIVGF--GRFGQVIGRLLMANKM-RITVLERDISAVNLMRK----Y---GYKVYYGDATQLELLRAAGAEKAEAIVI 470 (601)
T ss_pred CCEEEecC--chHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHh----C---CCeEEEeeCCCHHHHHhcCCccCCEEEE
Confidence 35665555 556665554 354 89999999999998875 2 46788999987531 245677665
Q ss_pred CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHH
Q 023703 172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDEL 217 (278)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 217 (278)
.- ++....... ....+.+.|+..++....+..+.+.
T Consensus 471 ~~---------~d~~~n~~i-~~~~r~~~p~~~IiaRa~~~~~~~~ 506 (601)
T PRK03659 471 TC---------NEPEDTMKI-VELCQQHFPHLHILARARGRVEAHE 506 (601)
T ss_pred Ee---------CCHHHHHHH-HHHHHHHCCCCeEEEEeCCHHHHHH
Confidence 21 111222222 3344557788888877665544433
No 366
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.11 E-value=2.5 Score=35.95 Aligned_cols=75 Identities=21% Similarity=0.247 Sum_probs=60.5
Q ss_pred CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-----------cC
Q 023703 98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----------LE 163 (278)
Q Consensus 98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----------~~ 163 (278)
-.+..||-=|.|+| .++..++++|+ ++...|+++...+...+..+..| .+....+|+.+.. .-
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g--~~~~y~cdis~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG--EAKAYTCDISDREEIYRLAKKVKKEV 112 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC--ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 36789999999998 57788888886 89999999999888888877665 6888999998752 13
Q ss_pred CCccEEEeCCcc
Q 023703 164 RQFQLVMDKGTL 175 (278)
Q Consensus 164 ~~fD~v~~~~~~ 175 (278)
+..|+++.|..+
T Consensus 113 G~V~ILVNNAGI 124 (300)
T KOG1201|consen 113 GDVDILVNNAGI 124 (300)
T ss_pred CCceEEEecccc
Confidence 678999988755
No 367
>PRK06181 short chain dehydrogenase; Provisional
Probab=89.10 E-value=11 Score=31.22 Aligned_cols=71 Identities=14% Similarity=0.134 Sum_probs=46.2
Q ss_pred CeEEEEecCCCHHHH----HHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CCC
Q 023703 101 WSVLDIGTGNGLLLQ----ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQ 165 (278)
Q Consensus 101 ~~vLDiGcG~G~~~~----~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~~ 165 (278)
++||-.|+.. .++. .++..|+ +|++++.++...+...+.+...+ .++.+..+|+.+... -++
T Consensus 2 ~~vlVtGasg-~iG~~la~~l~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 78 (263)
T PRK06181 2 KVVIITGASE-GIGRALAVRLARAGA-QLVLAARNETRLASLAQELADHG-GEALVVPTDVSDAEACERLIEAAVARFGG 78 (263)
T ss_pred CEEEEecCCc-HHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 3677777544 4444 3455575 89999999877666655554444 357888999877531 136
Q ss_pred ccEEEeCCc
Q 023703 166 FQLVMDKGT 174 (278)
Q Consensus 166 fD~v~~~~~ 174 (278)
.|+++.+..
T Consensus 79 id~vi~~ag 87 (263)
T PRK06181 79 IDILVNNAG 87 (263)
T ss_pred CCEEEECCC
Confidence 788887653
No 368
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=88.89 E-value=1.1 Score=38.17 Aligned_cols=49 Identities=16% Similarity=0.169 Sum_probs=43.4
Q ss_pred ccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC
Q 023703 96 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD 145 (278)
Q Consensus 96 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~ 145 (278)
...++..|||..+|+|..+......| ...+|+|+++..++.+.+++...
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa~~~~-r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAAKNLG-RRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHHHHcC-CceEEEecCHHHHHHHHHHHHhh
Confidence 34678899999999999999998886 58999999999999999988754
No 369
>PRK09072 short chain dehydrogenase; Provisional
Probab=88.87 E-value=8.9 Score=31.80 Aligned_cols=74 Identities=15% Similarity=0.177 Sum_probs=50.1
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc----------CCC
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------ERQ 165 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~----------~~~ 165 (278)
++.++|=.|++.| .++..++++|+ +|++++.++..++.....+. .+ .++.++.+|+.+... .+.
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-~~-~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 80 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLP-YP-GRHRWVVADLTSEAGREAVLARAREMGG 80 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHh-cC-CceEEEEccCCCHHHHHHHHHHHHhcCC
Confidence 4567888887765 34555666786 79999999887766655442 22 358888999987531 145
Q ss_pred ccEEEeCCcc
Q 023703 166 FQLVMDKGTL 175 (278)
Q Consensus 166 fD~v~~~~~~ 175 (278)
.|.++.+...
T Consensus 81 id~lv~~ag~ 90 (263)
T PRK09072 81 INVLINNAGV 90 (263)
T ss_pred CCEEEECCCC
Confidence 7888876543
No 370
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=88.86 E-value=6.8 Score=34.84 Aligned_cols=99 Identities=15% Similarity=0.036 Sum_probs=64.7
Q ss_pred eEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccceeccC
Q 023703 102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLH 181 (278)
Q Consensus 102 ~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~ 181 (278)
+||-++=.-|.++..++..+.. ...| |-.+-...+.|+..++++.-.+...+..+ .+++.+|+|+.. +
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~--~~~d-s~~~~~~~~~n~~~n~~~~~~~~~~~~~~-~~~~~~d~vl~~-----~--- 114 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPY--SIGD-SYISELATRENLRLNGIDESSVKFLDSTA-DYPQQPGVVLIK-----V--- 114 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCC--eeeh-HHHHHHHHHHHHHHcCCCcccceeecccc-cccCCCCEEEEE-----e---
Confidence 8999999999999999976432 2233 44555567888888887532222333332 234568988863 2
Q ss_pred CCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703 182 PDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 212 (278)
Q Consensus 182 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 212 (278)
|.........+..+..+|.||+.++......
T Consensus 115 PK~~~~l~~~l~~l~~~l~~~~~ii~g~~~k 145 (378)
T PRK15001 115 PKTLALLEQQLRALRKVVTSDTRIIAGAKAR 145 (378)
T ss_pred CCCHHHHHHHHHHHHhhCCCCCEEEEEEecC
Confidence 1222355566788999999999987665443
No 371
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=88.80 E-value=1.4 Score=39.24 Aligned_cols=51 Identities=20% Similarity=0.055 Sum_probs=36.8
Q ss_pred hhccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhh
Q 023703 92 EENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN 143 (278)
Q Consensus 92 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~ 143 (278)
..+.++.++.+||-|.+|.......+.. +.++|++||+||..+...+-+..
T Consensus 28 ~~aL~i~~~d~vl~ItSaG~N~L~yL~~-~P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 28 MEALNIGPDDRVLTITSAGCNALDYLLA-GPKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred HHHhCCCCCCeEEEEccCCchHHHHHhc-CCceEEEEeCCHHHHHHHHHHHH
Confidence 3445667888999998765555555444 45799999999998887765543
No 372
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=88.78 E-value=2.4 Score=37.03 Aligned_cols=44 Identities=18% Similarity=0.327 Sum_probs=32.5
Q ss_pred ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHH
Q 023703 96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS 140 (278)
Q Consensus 96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~ 140 (278)
...++.+||-.|||. |..+..+++. |. +|+++|.++.-++.+++
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence 346788999999844 4455555555 65 79999999998887765
No 373
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=88.69 E-value=1.7 Score=41.71 Aligned_cols=110 Identities=12% Similarity=0.180 Sum_probs=63.1
Q ss_pred CCCeEEEEecCCCHHHHHHhh-------C-C-----CCcEEEEeCCh---HHHHHH-----------HHHhhh-----CC
Q 023703 99 SSWSVLDIGTGNGLLLQELSK-------Q-G-----FSDLTGVDYSE---DAINLA-----------QSLANR-----DG 146 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~-------~-~-----~~~v~~~D~s~---~~i~~a-----------~~~~~~-----~~ 146 (278)
+.-+|+|+|-|+|.......+ . . .-+++++|..| ..+..+ ++..+. .|
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 346899999999976554431 1 1 12789999754 222222 121111 12
Q ss_pred C-------c--ceEEEEccccCCcc--CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703 147 F-------S--CIKFLVDDVLDTKL--ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 212 (278)
Q Consensus 147 ~-------~--~~~~~~~d~~~~~~--~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 212 (278)
+ . .+++..+|+.+... ...+|+++.++- .-......=...+++.+.++++|||++.-.+...
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~F----sP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~a~ 209 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGF----APAKNPDMWSPNLFNALARLARPGATLATFTSAG 209 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCC----CCccChhhccHHHHHHHHHHhCCCCEEEEeehHH
Confidence 1 1 34566788765422 356888886532 1111112233577899999999999988665433
No 374
>PLN02827 Alcohol dehydrogenase-like
Probab=88.63 E-value=2.2 Score=37.84 Aligned_cols=99 Identities=20% Similarity=0.169 Sum_probs=55.2
Q ss_pred cccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEE--ccccCC-c--cCCCc
Q 023703 95 DKYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLV--DDVLDT-K--LERQF 166 (278)
Q Consensus 95 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~--~d~~~~-~--~~~~f 166 (278)
....++.+||-.|+|. |.++..+++. |...|+++|.++...+.+++ .|.+. +.... .+.... . ..+.+
T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~~~g~ 264 (378)
T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMTGGGA 264 (378)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHhCCCC
Confidence 3456788999997632 2233334443 66569999999988777754 34321 11111 011110 0 12358
Q ss_pred cEEEeCCccceeccCCCChhhHHHHHHHHHhcccCC-cEEEEEec
Q 023703 167 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPG-GLLVITSC 210 (278)
Q Consensus 167 D~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 210 (278)
|+++..-.- ...+....+.+++| |++++...
T Consensus 265 d~vid~~G~-------------~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 265 DYSFECVGD-------------TGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred CEEEECCCC-------------hHHHHHHHHhhccCCCEEEEECC
Confidence 888753211 11236678888998 99987543
No 375
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=88.47 E-value=3.4 Score=35.82 Aligned_cols=96 Identities=17% Similarity=0.242 Sum_probs=56.7
Q ss_pred cCCC--CeEEEEec--CCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcce-EEEEccccCC---ccCCCcc
Q 023703 97 YLSS--WSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDDVLDT---KLERQFQ 167 (278)
Q Consensus 97 ~~~~--~~vLDiGc--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~-~~~~~d~~~~---~~~~~fD 167 (278)
..++ .+||=.|+ |.|..+..+++. |..+|++++.++...+.+++. .|.+.+ .....+..+. ..++.+|
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~~~~gvd 226 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLRELCPEGVD 226 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHHCCCCce
Confidence 4444 78998886 455666667766 654799999998877776653 233221 1111111110 0124688
Q ss_pred EEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
+++..-.- . .+..+.++|+++|+++...
T Consensus 227 ~vid~~g~-----------~---~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 227 VYFDNVGG-----------E---ISDTVISQMNENSHIILCG 254 (345)
T ss_pred EEEECCCc-----------H---HHHHHHHHhccCCEEEEEe
Confidence 88753110 1 1267788999999998753
No 376
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=88.44 E-value=1.6 Score=36.41 Aligned_cols=70 Identities=16% Similarity=0.164 Sum_probs=53.8
Q ss_pred cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCc
Q 023703 97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGT 174 (278)
Q Consensus 97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~ 174 (278)
+.++....|+|+-.|.++-.|.+++- .|+++|-.+-+-... .. ..++....|.+.+.+ ..+.|-.+|..+
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~sL~-----dt--g~v~h~r~DGfk~~P~r~~idWmVCDmV 279 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQSLM-----DT--GQVTHLREDGFKFRPTRSNIDWMVCDMV 279 (358)
T ss_pred hcCCceeeecccCCCccchhhhhcce-EEEEeccchhhhhhh-----cc--cceeeeeccCcccccCCCCCceEEeehh
Confidence 46888999999999999999999975 899999765432222 22 358888899988766 577888887644
No 377
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.24 E-value=11 Score=32.17 Aligned_cols=103 Identities=17% Similarity=0.225 Sum_probs=59.3
Q ss_pred CeEEEEecCCC--HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC-------CC----------cceEEEEccccCCc
Q 023703 101 WSVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-------GF----------SCIKFLVDDVLDTK 161 (278)
Q Consensus 101 ~~vLDiGcG~G--~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~-------~~----------~~~~~~~~d~~~~~ 161 (278)
.+|.=||+|.- .++..++..|. +|+..|.+++.++.+.+....+ +. .++.+ ..|...
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~-- 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLED-- 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHHH--
Confidence 46888888854 34555666676 8999999999988765433211 11 11221 122211
Q ss_pred cCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHH
Q 023703 162 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDE 216 (278)
Q Consensus 162 ~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 216 (278)
-...|+|+.. + +.+......+++.+...++|+.+++..+.+.+...
T Consensus 81 -~~~aD~Viea-----v---pe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~ 126 (292)
T PRK07530 81 -LADCDLVIEA-----A---TEDETVKRKIFAQLCPVLKPEAILATNTSSISITR 126 (292)
T ss_pred -hcCCCEEEEc-----C---cCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHH
Confidence 1346777752 1 12222344666888889999887664444444433
No 378
>PRK05872 short chain dehydrogenase; Provisional
Probab=88.23 E-value=10 Score=32.25 Aligned_cols=74 Identities=20% Similarity=0.224 Sum_probs=48.9
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 164 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~ 164 (278)
++++||-.|++.| .++..+++.|+ +|+.++.++..++...+.+.. + ..+..+.+|+.+... .+
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~-~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGG-D-DRVLTVVADVTDLAAMQAAAEEAVERFG 84 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcC-C-CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 5678998887665 34555666676 899999998877665544421 1 235556688876421 25
Q ss_pred CccEEEeCCcc
Q 023703 165 QFQLVMDKGTL 175 (278)
Q Consensus 165 ~fD~v~~~~~~ 175 (278)
+.|+++.+...
T Consensus 85 ~id~vI~nAG~ 95 (296)
T PRK05872 85 GIDVVVANAGI 95 (296)
T ss_pred CCCEEEECCCc
Confidence 78999987654
No 379
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=88.18 E-value=7.7 Score=33.36 Aligned_cols=99 Identities=12% Similarity=0.120 Sum_probs=55.5
Q ss_pred CeEEEEecCC--CHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc-----ceEEEEccccCCccCCCccEEEeCC
Q 023703 101 WSVLDIGTGN--GLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-----CIKFLVDDVLDTKLERQFQLVMDKG 173 (278)
Q Consensus 101 ~~vLDiGcG~--G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-----~~~~~~~d~~~~~~~~~fD~v~~~~ 173 (278)
.+|+-+|+|. |.++..|++.|. +|+.++-++..++..++. .|+. ...............+.||+|+..-
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~---~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~v 78 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQA---GGLTLVEQGQASLYAIPAETADAAEPIHRLLLAC 78 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhc---CCeEEeeCCcceeeccCCCCcccccccCEEEEEC
Confidence 3789999885 345666777675 799999987666655542 1210 0001111111111234688776421
Q ss_pred ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703 174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 213 (278)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 213 (278)
- ..+....++.+...+.++..++..-..-.
T Consensus 79 K----------~~~~~~al~~l~~~l~~~t~vv~lQNGv~ 108 (305)
T PRK05708 79 K----------AYDAEPAVASLAHRLAPGAELLLLQNGLG 108 (305)
T ss_pred C----------HHhHHHHHHHHHhhCCCCCEEEEEeCCCC
Confidence 1 11344566888899999987766543333
No 380
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=87.99 E-value=5.6 Score=35.32 Aligned_cols=113 Identities=17% Similarity=0.166 Sum_probs=65.2
Q ss_pred CeEEEEecCCCH--HHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccC------------Cc--c--
Q 023703 101 WSVLDIGTGNGL--LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD------------TK--L-- 162 (278)
Q Consensus 101 ~~vLDiGcG~G~--~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~------------~~--~-- 162 (278)
.+|--+|-|-=. ++..++..|+ +|+|+|+++..++...+. ...+..-+... .. +
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~-~ViG~DIn~~~Vd~ln~G-------~~~i~e~~~~~~v~~~v~~g~lraTtd~~~ 81 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGF-KVIGVDINQKKVDKLNRG-------ESYIEEPDLDEVVKEAVESGKLRATTDPEE 81 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCC-ceEeEeCCHHHHHHHhCC-------cceeecCcHHHHHHHHHhcCCceEecChhh
Confidence 466677665433 2334455676 899999999999877542 12222222211 00 0
Q ss_pred CCCccEEE-eCCc-cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe--cCCChHHHHHHHhh
Q 023703 163 ERQFQLVM-DKGT-LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS--CNSTKDELVHEVSN 223 (278)
Q Consensus 163 ~~~fD~v~-~~~~-~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~--~~~~~~~~~~~~~~ 223 (278)
-...|+++ +-++ +.. .+.++........+.+.+.|++|-.+++.+ +..+.+++...+.+
T Consensus 82 l~~~dv~iI~VPTPl~~--~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle 144 (436)
T COG0677 82 LKECDVFIICVPTPLKK--YREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLE 144 (436)
T ss_pred cccCCEEEEEecCCcCC--CCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHh
Confidence 01345433 3222 221 144555566677799999999999999975 55555666665543
No 381
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.92 E-value=3.7 Score=34.96 Aligned_cols=108 Identities=16% Similarity=0.238 Sum_probs=65.4
Q ss_pred CeEEEEecCCC--HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC-------CC----------cceEEEEccccCCc
Q 023703 101 WSVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-------GF----------SCIKFLVDDVLDTK 161 (278)
Q Consensus 101 ~~vLDiGcG~G--~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~-------~~----------~~~~~~~~d~~~~~ 161 (278)
.+|-=||+|+= .++..++..|+ +|+..|.++..++.+++++... |. .+++ ...|...
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~-- 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGD-- 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHH--
Confidence 37888999853 45556677786 8999999999999877664321 11 0111 1222211
Q ss_pred cCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcc-cCCcEEEEEecCCChHHHHHHH
Q 023703 162 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLV-APGGLLVITSCNSTKDELVHEV 221 (278)
Q Consensus 162 ~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~~~~~~~~~~~~~ 221 (278)
-...|+|+.. + +++..-...++..+.+++ +|+.++...+...+...+....
T Consensus 82 -~~~~d~ViEa-----v---~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~ 133 (286)
T PRK07819 82 -FADRQLVIEA-----V---VEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAAT 133 (286)
T ss_pred -hCCCCEEEEe-----c---ccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhc
Confidence 1346777753 2 233334556778888888 7777666666666666555543
No 382
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=87.89 E-value=2.3 Score=37.49 Aligned_cols=98 Identities=14% Similarity=0.113 Sum_probs=56.1
Q ss_pred ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEE--ccccC-C--ccCCCcc
Q 023703 96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLV--DDVLD-T--KLERQFQ 167 (278)
Q Consensus 96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~--~d~~~-~--~~~~~fD 167 (278)
...++.+||-.|||. |..+..+++. |..+|+++|.++...+.+++ .|... +.... .+..+ . ...+.+|
T Consensus 182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d 257 (368)
T TIGR02818 182 KVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEITDGGVD 257 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHhCCCCC
Confidence 456788999998743 3344455554 65579999999998888865 23221 11110 01101 0 0123578
Q ss_pred EEEeCCccceeccCCCChhhHHHHHHHHHhcccCC-cEEEEEec
Q 023703 168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPG-GLLVITSC 210 (278)
Q Consensus 168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 210 (278)
+++..-.- ...+..+.+.++++ |++++...
T Consensus 258 ~vid~~G~-------------~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 258 YSFECIGN-------------VNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred EEEECCCC-------------HHHHHHHHHHhhcCCCeEEEEec
Confidence 88753210 11236677888886 98887653
No 383
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=87.84 E-value=0.73 Score=37.27 Aligned_cols=61 Identities=21% Similarity=0.223 Sum_probs=49.4
Q ss_pred CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 160 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~ 160 (278)
...-|.+||.|.|.++..+...+.++...+++++..+.-.+...+... ..+.++.+|+...
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~-~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP-GKLRIHHGDVLRF 110 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC-cceEEecccccee
Confidence 345799999999999999999988899999999988887776655433 3578888888764
No 384
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.76 E-value=15 Score=30.54 Aligned_cols=72 Identities=15% Similarity=0.058 Sum_probs=43.9
Q ss_pred CCCeEEEEecCC-CH----HHHHHhhCCCCcEEEEeCCh---HHHHHHHHHhhhCCCcceEEEEccccCCcc--------
Q 023703 99 SSWSVLDIGTGN-GL----LLQELSKQGFSDLTGVDYSE---DAINLAQSLANRDGFSCIKFLVDDVLDTKL-------- 162 (278)
Q Consensus 99 ~~~~vLDiGcG~-G~----~~~~l~~~~~~~v~~~D~s~---~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-------- 162 (278)
.++++|-.|+++ +. ++..+++.|+ +|+.++.+. ..++...+... + .++.++.+|+.+...
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~-~~~~~~~~Dv~d~~~v~~~~~~~ 81 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAGERLEKEVRELADTLE--G-QESLLLPCDVTSDEEITACFETI 81 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCcccchHHHHHHHHHcC--C-CceEEEecCCCCHHHHHHHHHHH
Confidence 467899999862 33 4445566676 788876543 33333333221 2 357788899987521
Q ss_pred ---CCCccEEEeCCc
Q 023703 163 ---ERQFQLVMDKGT 174 (278)
Q Consensus 163 ---~~~fD~v~~~~~ 174 (278)
-++.|+++.+..
T Consensus 82 ~~~~g~ld~lv~nag 96 (257)
T PRK08594 82 KEEVGVIHGVAHCIA 96 (257)
T ss_pred HHhCCCccEEEECcc
Confidence 267899887654
No 385
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=87.71 E-value=1.2 Score=38.52 Aligned_cols=96 Identities=14% Similarity=0.183 Sum_probs=58.8
Q ss_pred cccCCCCeEEEEec--CCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEc-cccCC---ccCCCc
Q 023703 95 DKYLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVD-DVLDT---KLERQF 166 (278)
Q Consensus 95 ~~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~-d~~~~---~~~~~f 166 (278)
.+..++.+||=.|. |.|..+..+++. |. +|++++.++...+.+++ .|... +..... +..+. ...+.+
T Consensus 134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~~~gv 208 (325)
T TIGR02825 134 CGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKASPDGY 208 (325)
T ss_pred hCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHhCCCCe
Confidence 34567889998884 456677777776 65 79999999888777754 34322 111111 11110 012458
Q ss_pred cEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 167 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 167 D~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
|+++..-. . ..+..+.++|+++|+++...
T Consensus 209 dvv~d~~G------------~--~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 209 DCYFDNVG------------G--EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred EEEEECCC------------H--HHHHHHHHHhCcCcEEEEec
Confidence 88875211 1 12367888999999998764
No 386
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=87.61 E-value=1.1 Score=38.79 Aligned_cols=97 Identities=25% Similarity=0.310 Sum_probs=55.8
Q ss_pred ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEcc---ccCCccCCCccEE
Q 023703 96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDD---VLDTKLERQFQLV 169 (278)
Q Consensus 96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d---~~~~~~~~~fD~v 169 (278)
...++.+||-.|+|. |..+..+++. |...+++++-++...+.+++ .+... +...... +........+|++
T Consensus 156 ~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~----~g~~~~~~~~~~~~~~~~~~~~~~~~d~v 231 (343)
T cd08236 156 GITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE----LGADDTINPKEEDVEKVRELTEGRGADLV 231 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCCEEecCccccHHHHHHHhCCCCCCEE
Confidence 445778899988654 4555556655 65349999988887776643 23211 1111111 0111112458888
Q ss_pred EeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 170 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
+.... ....+..+.++|+++|.++...
T Consensus 232 ld~~g-------------~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 232 IEAAG-------------SPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred EECCC-------------CHHHHHHHHHHhhcCCEEEEEc
Confidence 86311 0112367889999999988764
No 387
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=87.57 E-value=6.9 Score=33.13 Aligned_cols=82 Identities=20% Similarity=0.205 Sum_probs=48.8
Q ss_pred eEEEEecCC--CHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccceec
Q 023703 102 SVLDIGTGN--GLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIG 179 (278)
Q Consensus 102 ~vLDiGcG~--G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~ 179 (278)
+|.=||+|. |.++..+.+.|. +|+++|.++..++.+.+. +. +.....+.. .-...|+|+..-+..
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~----g~--~~~~~~~~~---~~~~aDlVilavp~~--- 68 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIER----GL--VDEASTDLS---LLKDCDLVILALPIG--- 68 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHC----CC--cccccCCHh---HhcCCCEEEEcCCHH---
Confidence 467788875 356666666675 899999999888777642 21 111111111 113468887643322
Q ss_pred cCCCChhhHHHHHHHHHhcccCCc
Q 023703 180 LHPDGPLKRIMYWDSVSKLVAPGG 203 (278)
Q Consensus 180 ~~~~~~~~~~~~l~~~~~~LkpgG 203 (278)
....+++++...++|+.
T Consensus 69 -------~~~~~~~~l~~~l~~~~ 85 (279)
T PRK07417 69 -------LLLPPSEQLIPALPPEA 85 (279)
T ss_pred -------HHHHHHHHHHHhCCCCc
Confidence 33455677878787764
No 388
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=87.38 E-value=4.1 Score=38.27 Aligned_cols=92 Identities=10% Similarity=0.077 Sum_probs=55.5
Q ss_pred CeEEEEecCCCHHHHHHhh----CCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----CCCccEEEe
Q 023703 101 WSVLDIGTGNGLLLQELSK----QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVMD 171 (278)
Q Consensus 101 ~~vLDiGcG~G~~~~~l~~----~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----~~~fD~v~~ 171 (278)
.+|+=+||| .++..+++ +|. +++.+|.+++.++.+++ .+...+.+|..+... -++.|.++.
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~-------~g~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAGI-PLVVIETSRTRVDELRE-------RGIRAVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHH-------CCCeEEEcCCCCHHHHHhcCccccCEEEE
Confidence 467776665 45555544 454 79999999999888875 256789999988531 246776654
Q ss_pred CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703 172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 212 (278)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 212 (278)
.-. + ..+...... ..+...|+..++....+.
T Consensus 488 ~~~--------~-~~~~~~iv~-~~~~~~~~~~iiar~~~~ 518 (558)
T PRK10669 488 TIP--------N-GYEAGEIVA-SAREKRPDIEIIARAHYD 518 (558)
T ss_pred EcC--------C-hHHHHHHHH-HHHHHCCCCeEEEEECCH
Confidence 211 1 111112223 344557877777765443
No 389
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=87.29 E-value=12 Score=33.30 Aligned_cols=116 Identities=17% Similarity=0.196 Sum_probs=62.3
Q ss_pred hhhhccccCCCCeEEEEecCCC----HHHHHHhhC--CC--CcEEEEeC----ChHHHHHHHHHhhh----CCCcceEEE
Q 023703 90 PVEENDKYLSSWSVLDIGTGNG----LLLQELSKQ--GF--SDLTGVDY----SEDAINLAQSLANR----DGFSCIKFL 153 (278)
Q Consensus 90 ~~~~~~~~~~~~~vLDiGcG~G----~~~~~l~~~--~~--~~v~~~D~----s~~~i~~a~~~~~~----~~~~~~~~~ 153 (278)
+++.+.+. +..+|+|+|.|.| .+...|+.+ |. -+||+++. +...++.+.+++.. .|+ ..+|.
T Consensus 102 IleA~~g~-~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv-~fef~ 179 (374)
T PF03514_consen 102 ILEAFEGE-RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGV-PFEFH 179 (374)
T ss_pred HHHHhccC-cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCc-cEEEE
Confidence 33433333 5579999999999 455566665 22 28999999 77777777766543 354 34444
Q ss_pred Ec---cccCCcc---C-CCccEEEeCC--ccceeccCCCChh-hHHHHHHHHHhcccCCcEEEEE
Q 023703 154 VD---DVLDTKL---E-RQFQLVMDKG--TLDAIGLHPDGPL-KRIMYWDSVSKLVAPGGLLVIT 208 (278)
Q Consensus 154 ~~---d~~~~~~---~-~~fD~v~~~~--~~~~~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~ 208 (278)
.. ++.+..+ . .+=+.++.|. .++++.-++.... ....+|+.+ +.|+|.-.++..
T Consensus 180 ~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~i-r~L~P~vvv~~E 243 (374)
T PF03514_consen 180 PVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVI-RSLNPKVVVLVE 243 (374)
T ss_pred ecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHH-HhcCCCEEEEEe
Confidence 42 3332211 1 1112333333 3344432222222 234455544 467998666554
No 390
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=87.24 E-value=1 Score=39.03 Aligned_cols=97 Identities=25% Similarity=0.307 Sum_probs=57.9
Q ss_pred cccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccC----CccCCCcc
Q 023703 95 DKYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLD----TKLERQFQ 167 (278)
Q Consensus 95 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~----~~~~~~fD 167 (278)
....++.+||-.|+|. |..+..+++. |. +|+++..+++..+.+++. +... +.....+..+ ......+|
T Consensus 155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~~----g~~~v~~~~~~~~~~~l~~~~~~~~vd 229 (337)
T cd08261 155 AGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFAREL----GADDTINVGDEDVAARLRELTDGEGAD 229 (337)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHHh----CCCEEecCcccCHHHHHHHHhCCCCCC
Confidence 4456788999998753 5566666666 64 799998888877777542 2222 1111111111 11234588
Q ss_pred EEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
+++..-.- ...+..+.+.|+++|.++...
T Consensus 230 ~vld~~g~-------------~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 230 VVIDATGN-------------PASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred EEEECCCC-------------HHHHHHHHHHHhcCCEEEEEc
Confidence 88863110 112367888999999988654
No 391
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=87.06 E-value=8.4 Score=32.35 Aligned_cols=105 Identities=14% Similarity=0.090 Sum_probs=67.2
Q ss_pred CeEEEEecCCCHHHHHHhhCCCCcEEEEeCC-hHHHHHHHHHhhhCCC---cceEEEEccccCCc---c-CCCc-----c
Q 023703 101 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYS-EDAINLAQSLANRDGF---SCIKFLVDDVLDTK---L-ERQF-----Q 167 (278)
Q Consensus 101 ~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s-~~~i~~a~~~~~~~~~---~~~~~~~~d~~~~~---~-~~~f-----D 167 (278)
..|+.+|||-=.-...+... . .+..+|++ |..++.-++.+...+. .+..++..|+.+.. . ...| -
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~-~-~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~pt 160 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWP-D-GTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPT 160 (260)
T ss_pred cEEEEeCCccccHHHhcCCC-C-CCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCe
Confidence 46999999987777666433 2 34444444 5566666666664332 35788888987211 0 1222 3
Q ss_pred EEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703 168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 212 (278)
Q Consensus 168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 212 (278)
++++-+++..+. ......+++.+.+...||+.+++...+.
T Consensus 161 l~i~EGvl~YL~-----~~~v~~ll~~i~~~~~~gs~l~~d~~~~ 200 (260)
T TIGR00027 161 AWLWEGLLMYLT-----EEAVDALLAFIAELSAPGSRLAFDYVRP 200 (260)
T ss_pred eeeecchhhcCC-----HHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence 566666654443 5577788899988888999999886554
No 392
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.04 E-value=8.3 Score=32.77 Aligned_cols=106 Identities=18% Similarity=0.265 Sum_probs=59.8
Q ss_pred eEEEEecCCC--HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC--------CC----------cceEEEEccccCCc
Q 023703 102 SVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD--------GF----------SCIKFLVDDVLDTK 161 (278)
Q Consensus 102 ~vLDiGcG~G--~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~--------~~----------~~~~~~~~d~~~~~ 161 (278)
+|.=||+|.- .++..++..|. +|+.+|.++..++.++++.... .+ .++. ...|..+.
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~d~~~a- 81 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRIT-LTTDLAEA- 81 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeE-EeCCHHHH-
Confidence 6888888854 34455566675 8999999999988887653211 00 1121 12222211
Q ss_pred cCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHH
Q 023703 162 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH 219 (278)
Q Consensus 162 ~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 219 (278)
-...|+|+..-+ ........+++++...++++.++...+......++..
T Consensus 82 -~~~aDlVieavp--------e~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~ 130 (287)
T PRK08293 82 -VKDADLVIEAVP--------EDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAE 130 (287)
T ss_pred -hcCCCEEEEecc--------CCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHh
Confidence 134577775322 1222345666888888887776544444444444444
No 393
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=86.91 E-value=3 Score=37.46 Aligned_cols=99 Identities=20% Similarity=0.206 Sum_probs=57.1
Q ss_pred ccCCCCeEEEEec-C-CCHHHHHHhhC---CCCcEEEEeCChHHHHHHHHHhhhC----CCcceEEEEc----cccC---
Q 023703 96 KYLSSWSVLDIGT-G-NGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRD----GFSCIKFLVD----DVLD--- 159 (278)
Q Consensus 96 ~~~~~~~vLDiGc-G-~G~~~~~l~~~---~~~~v~~~D~s~~~i~~a~~~~~~~----~~~~~~~~~~----d~~~--- 159 (278)
...++.+||=+|+ | .|..+..+++. |..+|+++|.++.-++.+++.+... |. ...++.. +..+
T Consensus 172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga-~~~~i~~~~~~~~~~~v~ 250 (410)
T cd08238 172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGI-ELLYVNPATIDDLHATLM 250 (410)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCc-eEEEECCCccccHHHHHH
Confidence 3466789998874 3 45666666665 3347999999999999888753211 21 1112211 1111
Q ss_pred -CccCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703 160 -TKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 208 (278)
Q Consensus 160 -~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 208 (278)
......+|+++....- ...+....+.++++|.+++.
T Consensus 251 ~~t~g~g~D~vid~~g~-------------~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 251 ELTGGQGFDDVFVFVPV-------------PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HHhCCCCCCEEEEcCCC-------------HHHHHHHHHHhccCCeEEEE
Confidence 0112358888753110 11236778889988876654
No 394
>PRK08703 short chain dehydrogenase; Provisional
Probab=86.87 E-value=4.9 Score=32.77 Aligned_cols=75 Identities=11% Similarity=0.115 Sum_probs=46.7
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc--------------
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-------------- 161 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-------------- 161 (278)
++++||-.||+.| .++..++++|. +|++++.++...+.....+...+...+.+...|+.+..
T Consensus 5 ~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~ 83 (239)
T PRK08703 5 SDKTILVTGASQGLGEQVAKAYAAAGA-TVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEA 83 (239)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHH
Confidence 4568999997554 34445555676 79999999877666655544333224556667765321
Q ss_pred cCCCccEEEeCCc
Q 023703 162 LERQFQLVMDKGT 174 (278)
Q Consensus 162 ~~~~fD~v~~~~~ 174 (278)
..+..|.++.+..
T Consensus 84 ~~~~id~vi~~ag 96 (239)
T PRK08703 84 TQGKLDGIVHCAG 96 (239)
T ss_pred hCCCCCEEEEecc
Confidence 1146788886654
No 395
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=86.87 E-value=1.1 Score=39.37 Aligned_cols=96 Identities=20% Similarity=0.248 Sum_probs=56.3
Q ss_pred ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc------cCCCcc
Q 023703 96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------LERQFQ 167 (278)
Q Consensus 96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~------~~~~fD 167 (278)
...++.+||-.|+|. |..+..+++. |...++++|.++...+.+++ .+.. .++..+-.+.. ....+|
T Consensus 183 ~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~----~g~~--~~i~~~~~~~~~~v~~~~~~~~d 256 (365)
T cd08278 183 KPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE----LGAT--HVINPKEEDLVAAIREITGGGVD 256 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc--EEecCCCcCHHHHHHHHhCCCCc
Confidence 345678898887643 3444455554 66579999999887776654 2221 12221111100 134688
Q ss_pred EEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
+++..-.. ...+..+.+.|+++|.++....
T Consensus 257 ~vld~~g~-------------~~~~~~~~~~l~~~G~~v~~g~ 286 (365)
T cd08278 257 YALDTTGV-------------PAVIEQAVDALAPRGTLALVGA 286 (365)
T ss_pred EEEECCCC-------------cHHHHHHHHHhccCCEEEEeCc
Confidence 88853210 0123678888999999887653
No 396
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=86.75 E-value=3.5 Score=37.11 Aligned_cols=90 Identities=8% Similarity=0.035 Sum_probs=54.3
Q ss_pred cCCCCeEEEEecCCCHHH-HHHhh-CCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCc
Q 023703 97 YLSSWSVLDIGTGNGLLL-QELSK-QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGT 174 (278)
Q Consensus 97 ~~~~~~vLDiGcG~G~~~-~~l~~-~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~ 174 (278)
..++++|+-+|||.=... ..+++ .|+ +|+.+|.++.-.+.|+. .|. ... +..+ .-...|+|+....
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~----~G~---~~~--~~~e--~v~~aDVVI~atG 266 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM----EGY---EVM--TMEE--AVKEGDIFVTTTG 266 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh----cCC---EEc--cHHH--HHcCCCEEEECCC
Confidence 357899999999873322 22333 366 79999999987777764 332 111 1111 1134688886321
Q ss_pred cceeccCCCChhhHHHHH-HHHHhcccCCcEEEEEecC
Q 023703 175 LDAIGLHPDGPLKRIMYW-DSVSKLVAPGGLLVITSCN 211 (278)
Q Consensus 175 ~~~~~~~~~~~~~~~~~l-~~~~~~LkpgG~l~~~~~~ 211 (278)
- . ..+ ....+.+|+||+++.....
T Consensus 267 ~------------~-~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 267 N------------K-DIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred C------------H-HHHHHHHHhcCCCCcEEEEeCCC
Confidence 1 1 112 3457899999999887643
No 397
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=86.61 E-value=3.5 Score=35.79 Aligned_cols=95 Identities=25% Similarity=0.256 Sum_probs=52.8
Q ss_pred CCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccc---cCCccCCCccEEEe
Q 023703 98 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDV---LDTKLERQFQLVMD 171 (278)
Q Consensus 98 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~---~~~~~~~~fD~v~~ 171 (278)
.++.+||-.|+|. |..+..+++. |..+|++++-++.-.+.+++ .+... +.....+. ......+.+|+++.
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~vd~vld 237 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKK----MGADVVINPREEDVVEVKSVTDGTGVDVVLE 237 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCcceeeCcccccHHHHHHHcCCCCCCEEEE
Confidence 5677888876543 3444455555 64468888877776666554 23211 11111121 11122356888886
Q ss_pred CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
.-.- ...+..+.+.|+++|.++...
T Consensus 238 ~~g~-------------~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 238 MSGN-------------PKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred CCCC-------------HHHHHHHHHHhccCCEEEEEc
Confidence 3210 112267788999999988764
No 398
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.59 E-value=4.8 Score=32.92 Aligned_cols=74 Identities=15% Similarity=0.209 Sum_probs=48.4
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 164 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~ 164 (278)
+++++|-.|++.| .++..++++|. +|+.++.++..++.+.+.....+ .++.++..|+.+... .+
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALG-TEVRGYAANVTDEEDVEATFAQIAEDFG 81 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4668998887544 23334455575 79999999877666655554443 357788899876421 14
Q ss_pred CccEEEeCCc
Q 023703 165 QFQLVMDKGT 174 (278)
Q Consensus 165 ~fD~v~~~~~ 174 (278)
+.|.|+.+..
T Consensus 82 ~id~vi~~ag 91 (253)
T PRK08217 82 QLNGLINNAG 91 (253)
T ss_pred CCCEEEECCC
Confidence 6899987654
No 399
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.50 E-value=18 Score=30.37 Aligned_cols=108 Identities=13% Similarity=0.062 Sum_probs=60.7
Q ss_pred CCCeEEEEecC--CC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------
Q 023703 99 SSWSVLDIGTG--NG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------- 162 (278)
Q Consensus 99 ~~~~vLDiGcG--~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~----------- 162 (278)
.++.+|-.|++ .| .++..+++.|+ +|+.++.++...+.+++.....+. . .++.+|+.+...
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~-~-~~~~~Dv~d~~~v~~~~~~i~~~ 80 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEALKKRVEPIAQELGS-D-YVYELDVSKPEHFKSLAESLKKD 80 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCC-c-eEEEecCCCHHHHHHHHHHHHHH
Confidence 46789999985 23 24555666786 788888885433333333333332 2 567889887521
Q ss_pred CCCccEEEeCCcccee-----ccCCCChhhH-----------HHHHHHHHhcccCCcEEEEEe
Q 023703 163 ERQFQLVMDKGTLDAI-----GLHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 163 ~~~fD~v~~~~~~~~~-----~~~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~ 209 (278)
.++.|+++.+..+..- .+......+. ..+.+.+...|+.+|.++..+
T Consensus 81 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~is 143 (274)
T PRK08415 81 LGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLS 143 (274)
T ss_pred cCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEe
Confidence 2678999987654210 0111111111 233466667777778776654
No 400
>PRK06128 oxidoreductase; Provisional
Probab=86.47 E-value=17 Score=30.96 Aligned_cols=109 Identities=13% Similarity=0.141 Sum_probs=61.4
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChH--HHHHHHHHhhhCCCcceEEEEccccCCcc-----------
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSED--AINLAQSLANRDGFSCIKFLVDDVLDTKL----------- 162 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~--~i~~a~~~~~~~~~~~~~~~~~d~~~~~~----------- 162 (278)
.+++||-.|++.| .++..+++.|+ +|+.+..++. ..+...+.+...+ .++.++.+|+.+...
T Consensus 54 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~ 131 (300)
T PRK06128 54 QGRKALITGADSGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEG-RKAVALPGDLKDEAFCRQLVERAVKE 131 (300)
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcC-CeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 4678999997555 34455666676 6777665432 2333333333333 257788899987421
Q ss_pred CCCccEEEeCCccceec--cCCCChh-----------hHHHHHHHHHhcccCCcEEEEEe
Q 023703 163 ERQFQLVMDKGTLDAIG--LHPDGPL-----------KRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 163 ~~~fD~v~~~~~~~~~~--~~~~~~~-----------~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
-++.|+++.+....... +.....+ ....+++.+.+.|+++|.++..+
T Consensus 132 ~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~s 191 (300)
T PRK06128 132 LGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTG 191 (300)
T ss_pred hCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEEC
Confidence 14689998876532110 1111111 11245566777778888877753
No 401
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=86.46 E-value=6.5 Score=32.23 Aligned_cols=76 Identities=14% Similarity=0.168 Sum_probs=48.6
Q ss_pred CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-------------
Q 023703 98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------------- 161 (278)
Q Consensus 98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~------------- 161 (278)
.++++||-.|+..| .++..+++.|+ +|++++.++...+...+.+...+..++.++..|+....
T Consensus 10 ~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 88 (247)
T PRK08945 10 LKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEE 88 (247)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHH
Confidence 36778999996444 23334555575 89999999877766655555444335667777775321
Q ss_pred cCCCccEEEeCCc
Q 023703 162 LERQFQLVMDKGT 174 (278)
Q Consensus 162 ~~~~fD~v~~~~~ 174 (278)
..++.|.++.+..
T Consensus 89 ~~~~id~vi~~Ag 101 (247)
T PRK08945 89 QFGRLDGVLHNAG 101 (247)
T ss_pred HhCCCCEEEECCc
Confidence 1246898887654
No 402
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.04 E-value=19 Score=30.15 Aligned_cols=74 Identities=22% Similarity=0.124 Sum_probs=46.8
Q ss_pred CCCeEEEEecCC--C---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------
Q 023703 99 SSWSVLDIGTGN--G---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------- 162 (278)
Q Consensus 99 ~~~~vLDiGcG~--G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~----------- 162 (278)
+++.+|-.|++. | .++..|++.|+ +|+.++.++...+..++.....+ ...++.+|+.+...
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~g--~~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEALGKRVKPLAESLG--SDFVLPCDVEDIASVDAVFEALEKK 82 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchHHHHHHHHHHHhcC--CceEEeCCCCCHHHHHHHHHHHHHH
Confidence 467899999875 4 45666777786 78888876544443333333223 23467889887521
Q ss_pred CCCccEEEeCCcc
Q 023703 163 ERQFQLVMDKGTL 175 (278)
Q Consensus 163 ~~~fD~v~~~~~~ 175 (278)
.++.|+++.+..+
T Consensus 83 ~g~iD~lVnnAG~ 95 (271)
T PRK06505 83 WGKLDFVVHAIGF 95 (271)
T ss_pred hCCCCEEEECCcc
Confidence 2678999987654
No 403
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.04 E-value=1.9 Score=36.96 Aligned_cols=46 Identities=26% Similarity=0.288 Sum_probs=36.0
Q ss_pred cccCCCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHH
Q 023703 95 DKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQS 140 (278)
Q Consensus 95 ~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~ 140 (278)
.+..++.+|.-+|+|.=.++...-.+ |+++++|+|+++.-.+.|++
T Consensus 188 Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 188 AKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred cccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence 44578888999988876555554333 78899999999999999886
No 404
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.93 E-value=18 Score=29.80 Aligned_cols=72 Identities=14% Similarity=0.058 Sum_probs=45.5
Q ss_pred CCCeEEEEecCC--C---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------
Q 023703 99 SSWSVLDIGTGN--G---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------- 162 (278)
Q Consensus 99 ~~~~vLDiGcG~--G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~----------- 162 (278)
.++++|-.|.++ | .++..+++.|+ +|+.++.++...+.+++.. + ..+.++.+|+.+...
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~~~~~~~~~~~---~-~~~~~~~~Dl~~~~~v~~~~~~~~~~ 80 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMKKSLQKLV---D-EEDLLVECDVASDESIERAFATIKER 80 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCchHHHHHHHhhc---c-CceeEEeCCCCCHHHHHHHHHHHHHH
Confidence 567899888763 3 34556666676 7888887644333333221 1 247788899987420
Q ss_pred CCCccEEEeCCcc
Q 023703 163 ERQFQLVMDKGTL 175 (278)
Q Consensus 163 ~~~fD~v~~~~~~ 175 (278)
-++.|+++.+..+
T Consensus 81 ~g~iD~lv~nAg~ 93 (252)
T PRK06079 81 VGKIDGIVHAIAY 93 (252)
T ss_pred hCCCCEEEEcccc
Confidence 2578999887654
No 405
>PRK08339 short chain dehydrogenase; Provisional
Probab=85.68 E-value=5.1 Score=33.43 Aligned_cols=75 Identities=12% Similarity=0.153 Sum_probs=51.6
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc----------CCC
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------ERQ 165 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~----------~~~ 165 (278)
+++++|-.|++.| .++..+++.|+ +|+.++.++..++.+.+.+....-.++.++.+|+.+... .++
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~ 85 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGE 85 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence 4678888888766 45566777786 799999998877766655443211357888999987531 146
Q ss_pred ccEEEeCCc
Q 023703 166 FQLVMDKGT 174 (278)
Q Consensus 166 fD~v~~~~~ 174 (278)
.|+++.+..
T Consensus 86 iD~lv~nag 94 (263)
T PRK08339 86 PDIFFFSTG 94 (263)
T ss_pred CcEEEECCC
Confidence 888887654
No 406
>PRK05867 short chain dehydrogenase; Provisional
Probab=85.58 E-value=4.8 Score=33.20 Aligned_cols=75 Identities=12% Similarity=0.087 Sum_probs=53.1
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 164 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~ 164 (278)
.++++|-.|+++| .++..++++|+ +|+.++.++..++...+.+...+ .++.++.+|+.+... .+
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSG-GKVVPVCCDVSQHQQVTSMLDQVTAELG 85 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4678999998766 34556666776 79999999887777766655444 357788899876421 15
Q ss_pred CccEEEeCCcc
Q 023703 165 QFQLVMDKGTL 175 (278)
Q Consensus 165 ~fD~v~~~~~~ 175 (278)
+.|+++.+...
T Consensus 86 ~id~lv~~ag~ 96 (253)
T PRK05867 86 GIDIAVCNAGI 96 (253)
T ss_pred CCCEEEECCCC
Confidence 78998876543
No 407
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=85.31 E-value=11 Score=32.13 Aligned_cols=106 Identities=14% Similarity=0.201 Sum_probs=60.3
Q ss_pred CeEEEEecCCC--HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhh-------hCCC----------cceEEEEccccCCc
Q 023703 101 WSVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLAN-------RDGF----------SCIKFLVDDVLDTK 161 (278)
Q Consensus 101 ~~vLDiGcG~G--~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~-------~~~~----------~~~~~~~~d~~~~~ 161 (278)
++|.=||+|.= .++..++..|. +|+++|.++..++.+++++. ..+. ..+. ...+..
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~--- 79 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNLE--- 79 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCHH---
Confidence 46888888742 45555666675 89999999999887665432 1111 0011 111211
Q ss_pred cCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHH
Q 023703 162 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH 219 (278)
Q Consensus 162 ~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 219 (278)
.-...|+|+.. + ++++.....++.++...++|+.+++..+...+...+.+
T Consensus 80 ~~~~aD~Viea-----v---~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~ 129 (295)
T PLN02545 80 ELRDADFIIEA-----I---VESEDLKKKLFSELDRICKPSAILASNTSSISITRLAS 129 (295)
T ss_pred HhCCCCEEEEc-----C---ccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh
Confidence 11345777752 1 22333455667888888888876654445545444444
No 408
>PRK06139 short chain dehydrogenase; Provisional
Probab=85.30 E-value=6.5 Score=34.25 Aligned_cols=75 Identities=15% Similarity=0.209 Sum_probs=52.8
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-----------cCC
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----------LER 164 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 164 (278)
++++||-.|+++| .++..++++|+ +|+.++.++..++...+.+...+ .++.++..|+.+.. ..+
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 83 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALG-AEVLVVPTDVTDADQVKALATQAASFGG 83 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CcEEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 4568888888655 34455666776 79999999988877766665555 25777888987642 025
Q ss_pred CccEEEeCCcc
Q 023703 165 QFQLVMDKGTL 175 (278)
Q Consensus 165 ~fD~v~~~~~~ 175 (278)
++|+++.+..+
T Consensus 84 ~iD~lVnnAG~ 94 (330)
T PRK06139 84 RIDVWVNNVGV 94 (330)
T ss_pred CCCEEEECCCc
Confidence 78999987654
No 409
>PRK07985 oxidoreductase; Provisional
Probab=85.13 E-value=12 Score=31.72 Aligned_cols=109 Identities=13% Similarity=0.105 Sum_probs=61.3
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCCh--HHHHHHHHHhhhCCCcceEEEEccccCCc-----------c
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSE--DAINLAQSLANRDGFSCIKFLVDDVLDTK-----------L 162 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~--~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----------~ 162 (278)
+++++|-.|++.| .++..|++.|+ +|+.++.+. ...+...+.....+ .++.++.+|+.+.. .
T Consensus 48 ~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~ 125 (294)
T PRK07985 48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLPVEEEDAQDVKKIIEECG-RKAVLLPGDLSDEKFARSLVHEAHKA 125 (294)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCCcchhhHHHHHHHHHHcC-CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 5678999997655 35556666776 788776542 33444444333333 25778889998742 1
Q ss_pred CCCccEEEeCCcccee--ccCCCChhh-----------HHHHHHHHHhcccCCcEEEEEe
Q 023703 163 ERQFQLVMDKGTLDAI--GLHPDGPLK-----------RIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 163 ~~~fD~v~~~~~~~~~--~~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
-++.|+++.+...... .+......+ ...+++.+.+.|+.+|.+++.+
T Consensus 126 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iS 185 (294)
T PRK07985 126 LGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTS 185 (294)
T ss_pred hCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEEC
Confidence 2467888876543110 011111111 1244566666777788877753
No 410
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=85.07 E-value=1.6 Score=38.28 Aligned_cols=86 Identities=13% Similarity=0.089 Sum_probs=64.1
Q ss_pred hhhhccccCCCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccC---C
Q 023703 90 PVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE---R 164 (278)
Q Consensus 90 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~---~ 164 (278)
+...+....+|.+|+|+.|-.|.-+.+++.. .-.++.|+|.++.-.+..++.+...|...++...+|......+ .
T Consensus 204 lpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~~~~~ 283 (413)
T KOG2360|consen 204 LPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTATPEKFR 283 (413)
T ss_pred chhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCCCccccc
Confidence 3344445567799999999999888888775 2237999999999999999999888887788889998874322 2
Q ss_pred CccEEEeCCcc
Q 023703 165 QFQLVMDKGTL 175 (278)
Q Consensus 165 ~fD~v~~~~~~ 175 (278)
....+++.++.
T Consensus 284 ~v~~iL~Dpsc 294 (413)
T KOG2360|consen 284 DVTYILVDPSC 294 (413)
T ss_pred ceeEEEeCCCC
Confidence 33456655544
No 411
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=85.03 E-value=3.6 Score=36.76 Aligned_cols=109 Identities=17% Similarity=0.127 Sum_probs=57.0
Q ss_pred ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEc---cccC----CccCCCc
Q 023703 96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD---DVLD----TKLERQF 166 (278)
Q Consensus 96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~---d~~~----~~~~~~f 166 (278)
...++.+||-.|+|. |..+..+++. |...++.+|.++.-++.+++ .|.. .+... +..+ ......+
T Consensus 182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~----~Ga~--~v~~~~~~~~~~~v~~~~~~~g~ 255 (393)
T TIGR02819 182 GVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARS----FGCE--TVDLSKDATLPEQIEQILGEPEV 255 (393)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH----cCCe--EEecCCcccHHHHHHHHcCCCCC
Confidence 356777888766642 2233344444 66557778888888888775 3332 12111 1111 1112458
Q ss_pred cEEEeCCccceec-cCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 167 QLVMDKGTLDAIG-LHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 167 D~v~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
|+++..-...... .+..........++.+.+++++||++++...
T Consensus 256 Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 256 DCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred cEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 8888532211000 0000001112345788899999999998754
No 412
>PRK07904 short chain dehydrogenase; Provisional
Probab=84.92 E-value=5.2 Score=33.17 Aligned_cols=75 Identities=15% Similarity=0.146 Sum_probs=47.4
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHH-HHHHHHHhhhCCCcceEEEEccccCCcc----------CC
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDA-INLAQSLANRDGFSCIKFLVDDVLDTKL----------ER 164 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~-i~~a~~~~~~~~~~~~~~~~~d~~~~~~----------~~ 164 (278)
.+++||-.|++.| .++..++++|..+|+.++.++.. ++.+.+.++..+..++.++.+|+.+... .+
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~g 86 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAGG 86 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhcC
Confidence 4568999998655 23444455543489999988764 5555444444443368889999876431 14
Q ss_pred CccEEEeCC
Q 023703 165 QFQLVMDKG 173 (278)
Q Consensus 165 ~fD~v~~~~ 173 (278)
..|+++.+.
T Consensus 87 ~id~li~~a 95 (253)
T PRK07904 87 DVDVAIVAF 95 (253)
T ss_pred CCCEEEEee
Confidence 688877643
No 413
>PRK12937 short chain dehydrogenase; Provisional
Probab=84.85 E-value=19 Score=29.17 Aligned_cols=109 Identities=13% Similarity=0.150 Sum_probs=59.5
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCC-hHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------C
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYS-EDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 163 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s-~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~ 163 (278)
++++||-.|++.| .++..++++|+ +++.+..+ +...+...+.+...+ .++.++..|+.+... .
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAADGF-AVAVNYAGSAAAADELVAEIEAAG-GRAIAVQADVADAAAVTRLFDAAETAF 81 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4568888888554 34445566676 56666543 333333333343333 357888999876421 1
Q ss_pred CCccEEEeCCcccee-ccCCCChh-----------hHHHHHHHHHhcccCCcEEEEEe
Q 023703 164 RQFQLVMDKGTLDAI-GLHPDGPL-----------KRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 164 ~~fD~v~~~~~~~~~-~~~~~~~~-----------~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
++.|+++.+...... .+...... ....+++.+.+.++++|.++..+
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 139 (245)
T PRK12937 82 GRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLS 139 (245)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEe
Confidence 467888876543211 01111111 11233456666677788877765
No 414
>PRK07890 short chain dehydrogenase; Provisional
Probab=84.83 E-value=6.5 Score=32.39 Aligned_cols=74 Identities=14% Similarity=0.154 Sum_probs=50.8
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 164 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~ 164 (278)
++++||-.|++.| .++..++.+|+ +|+.++.++...+.........+ .++.++..|+.+... -+
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLG-RRALAVPTDITDEDQCANLVALALERFG 81 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhC-CceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 4568888887655 34455666786 89999999877766665554433 357889999976421 14
Q ss_pred CccEEEeCCc
Q 023703 165 QFQLVMDKGT 174 (278)
Q Consensus 165 ~fD~v~~~~~ 174 (278)
+.|+++.+..
T Consensus 82 ~~d~vi~~ag 91 (258)
T PRK07890 82 RVDALVNNAF 91 (258)
T ss_pred CccEEEECCc
Confidence 6899887654
No 415
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=84.80 E-value=7 Score=32.29 Aligned_cols=73 Identities=15% Similarity=0.110 Sum_probs=49.5
Q ss_pred CCCeEEEEecCCCHHHHH----HhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------C
Q 023703 99 SSWSVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 163 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~----l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~ 163 (278)
+++++|-.|+ +|.++.. ++++|+ +|+.++.++...+...+.....+ .++.++.+|+.+... .
T Consensus 11 ~~k~ilItGa-~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~-~~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 11 SGKTALVTGG-SRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALG-IDALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 5678998885 4544444 444576 89999998877776666554443 257788999987421 1
Q ss_pred CCccEEEeCCc
Q 023703 164 RQFQLVMDKGT 174 (278)
Q Consensus 164 ~~fD~v~~~~~ 174 (278)
++.|.++.+..
T Consensus 88 ~~id~vi~~ag 98 (259)
T PRK08213 88 GHVDILVNNAG 98 (259)
T ss_pred CCCCEEEECCC
Confidence 46898887654
No 416
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=84.56 E-value=3.2 Score=36.04 Aligned_cols=97 Identities=19% Similarity=0.250 Sum_probs=58.9
Q ss_pred cccCCCCeEEEEec--CCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEc-cccCC---ccCCCc
Q 023703 95 DKYLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVD-DVLDT---KLERQF 166 (278)
Q Consensus 95 ~~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~-d~~~~---~~~~~f 166 (278)
.+..++.+||-.|+ |.|..+..+++. |. +|++++.++...+.+++.+ |... +..... +..+. .....+
T Consensus 147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~l---Ga~~vi~~~~~~~~~~~i~~~~~~gv 222 (338)
T cd08295 147 CKPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNKL---GFDDAFNYKEEPDLDAALKRYFPNGI 222 (338)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhc---CCceeEEcCCcccHHHHHHHhCCCCc
Confidence 45578889999886 455666666766 65 7999998888877776532 3222 111111 11110 012467
Q ss_pred cEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 167 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 167 D~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
|+++.. +. . ..+..+.++|+++|+++...
T Consensus 223 d~v~d~-----~g-------~--~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 223 DIYFDN-----VG-------G--KMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred EEEEEC-----CC-------H--HHHHHHHHHhccCcEEEEec
Confidence 888752 11 1 22367889999999998753
No 417
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=84.46 E-value=4.9 Score=35.18 Aligned_cols=93 Identities=19% Similarity=0.112 Sum_probs=52.8
Q ss_pred CCCCeEEEEecCCCHHHH---HHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcce-EEEEccc-------cCCccCCC
Q 023703 98 LSSWSVLDIGTGNGLLLQ---ELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDDV-------LDTKLERQ 165 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~---~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~-~~~~~d~-------~~~~~~~~ 165 (278)
.++.+||-.|+ |.++. .+++. |.++|++++.++.-.+.+++ .|...+ .....+. ........
T Consensus 176 ~~g~~vlI~g~--g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~~~~ 249 (361)
T cd08231 176 GAGDTVVVQGA--GPLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FGADATIDIDELPDPQRRAIVRDITGGRG 249 (361)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCCeEEcCcccccHHHHHHHHHHhCCCC
Confidence 46778888875 44444 34444 65479999988887766643 333221 1111111 11111246
Q ss_pred ccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 166 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 166 fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
+|+++....- ...+....+.|+++|+++...
T Consensus 250 ~d~vid~~g~-------------~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 250 ADVVIEASGH-------------PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred CcEEEECCCC-------------hHHHHHHHHHhccCCEEEEEc
Confidence 8888853210 112367788999999998764
No 418
>PRK07832 short chain dehydrogenase; Provisional
Probab=84.38 E-value=22 Score=29.61 Aligned_cols=72 Identities=19% Similarity=0.180 Sum_probs=44.0
Q ss_pred eEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CCCcc
Q 023703 102 SVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQFQ 167 (278)
Q Consensus 102 ~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~~fD 167 (278)
++|-.|+++| .++..+++.|+ +|+.++.++..++...+.+...+...+.+..+|+.+... .++.|
T Consensus 2 ~vlItGas~giG~~la~~la~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGA-ELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMD 80 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 4666776544 23444566675 799999888777666555444332224557788876321 24579
Q ss_pred EEEeCCc
Q 023703 168 LVMDKGT 174 (278)
Q Consensus 168 ~v~~~~~ 174 (278)
+++.+..
T Consensus 81 ~lv~~ag 87 (272)
T PRK07832 81 VVMNIAG 87 (272)
T ss_pred EEEECCC
Confidence 8887654
No 419
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=84.34 E-value=5.3 Score=37.00 Aligned_cols=42 Identities=21% Similarity=0.168 Sum_probs=30.8
Q ss_pred CCCCeEEEEecCCCH-HHHHHhhC-CCCcEEEEeCChHHHHHHHH
Q 023703 98 LSSWSVLDIGTGNGL-LLQELSKQ-GFSDLTGVDYSEDAINLAQS 140 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~-~~~~l~~~-~~~~v~~~D~s~~~i~~a~~ 140 (278)
.++.+|+-+|||.=. .+..++.. |+ .|+++|.++..++.++.
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 456899999998753 33334443 65 79999999998877765
No 420
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=84.25 E-value=3.6 Score=35.35 Aligned_cols=96 Identities=17% Similarity=0.242 Sum_probs=58.0
Q ss_pred cccCCCCeEEEEec--CCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCC---ccCCCcc
Q 023703 95 DKYLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDT---KLERQFQ 167 (278)
Q Consensus 95 ~~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~---~~~~~fD 167 (278)
.+..++.+||-.|. |.|..+..+++. |. +|++++.++.-.+.+++ .|... +.....|..+. .....+|
T Consensus 139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~~~~gvd 213 (329)
T cd08294 139 CKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEAAPDGID 213 (329)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHCCCCcE
Confidence 34567889988874 455666666766 65 79999999888777765 33322 11111111110 0124588
Q ss_pred EEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
+++.. +. . ..+....+.|+++|.++...
T Consensus 214 ~vld~-----~g-------~--~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 214 CYFDN-----VG-------G--EFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred EEEEC-----CC-------H--HHHHHHHHhhccCCEEEEEc
Confidence 88752 11 1 22377888999999998653
No 421
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=84.13 E-value=6.3 Score=35.59 Aligned_cols=100 Identities=14% Similarity=0.101 Sum_probs=54.1
Q ss_pred CeEEEEecCCCH--HHHHHhhCCCCcEEEEeCChHHHHHHHHHhh---------------hCCCcceEEEEccccCCccC
Q 023703 101 WSVLDIGTGNGL--LLQELSKQGFSDLTGVDYSEDAINLAQSLAN---------------RDGFSCIKFLVDDVLDTKLE 163 (278)
Q Consensus 101 ~~vLDiGcG~G~--~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~---------------~~~~~~~~~~~~d~~~~~~~ 163 (278)
.+|.=||.|.-. ++..|++.|+ +|+++|.++..++..+.... ..| ...+. .+.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g--~l~~~-~~~------ 73 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGG--YLRAT-TTP------ 73 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcC--ceeee-ccc------
Confidence 367888888543 4445666776 89999999998886432100 011 11111 111
Q ss_pred CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 164 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 164 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
+..|+|+..-+-..-.-..++.......++.+.+.|++|.+++..+.
T Consensus 74 ~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~ST 120 (415)
T PRK11064 74 EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILEST 120 (415)
T ss_pred ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 23566664211100000112223555666888899999887777653
No 422
>PRK06172 short chain dehydrogenase; Provisional
Probab=84.10 E-value=6.5 Score=32.32 Aligned_cols=75 Identities=15% Similarity=0.159 Sum_probs=51.3
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 164 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~ 164 (278)
++++||-.|++.| .++..+++.|+ +|+.++.++..++.+.+.+...+ .++.++.+|+.+... .+
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~i~~~~~~~~~~~g 83 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAG-GEALFVACDVTRDAEVKALVEQTIAAYG 83 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 4678999987655 34445566675 79999999887766666555444 358888999976421 14
Q ss_pred CccEEEeCCcc
Q 023703 165 QFQLVMDKGTL 175 (278)
Q Consensus 165 ~fD~v~~~~~~ 175 (278)
+.|+++.+...
T Consensus 84 ~id~li~~ag~ 94 (253)
T PRK06172 84 RLDYAFNNAGI 94 (253)
T ss_pred CCCEEEECCCC
Confidence 67999877543
No 423
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=84.09 E-value=6.6 Score=32.35 Aligned_cols=74 Identities=14% Similarity=0.199 Sum_probs=49.7
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 164 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~ 164 (278)
++++||-.|++.| .++..++++|+ +|+.++.++..++.....++..+ .++.++.+|+.+... -+
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 87 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAG-GAAEALAFDIADEEAVAAAFARIDAEHG 87 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcC-CceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 5678998886554 23444555676 89999999877666655555444 257888999876421 14
Q ss_pred CccEEEeCCc
Q 023703 165 QFQLVMDKGT 174 (278)
Q Consensus 165 ~fD~v~~~~~ 174 (278)
+.|.++.+..
T Consensus 88 ~id~vi~~ag 97 (256)
T PRK06124 88 RLDILVNNVG 97 (256)
T ss_pred CCCEEEECCC
Confidence 6788887654
No 424
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=84.04 E-value=3 Score=36.21 Aligned_cols=103 Identities=20% Similarity=0.291 Sum_probs=62.2
Q ss_pred ccCCCCeEEEEecCCCHHHH-HHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEc----cccCCc---cCCCc
Q 023703 96 KYLSSWSVLDIGTGNGLLLQ-ELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD----DVLDTK---LERQF 166 (278)
Q Consensus 96 ~~~~~~~vLDiGcG~G~~~~-~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~----d~~~~~---~~~~f 166 (278)
+..++.+|.-+|||.=.++. .-+.. |+.+++++|+++.-+++|++. |. .++++. |+.+.. .++..
T Consensus 182 ~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f----GA--T~~vn~~~~~~vv~~i~~~T~gG~ 255 (366)
T COG1062 182 KVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF----GA--THFVNPKEVDDVVEAIVELTDGGA 255 (366)
T ss_pred cCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc----CC--ceeecchhhhhHHHHHHHhcCCCC
Confidence 45788899999997544333 33333 777999999999999999873 32 222322 222111 12345
Q ss_pred cEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHH
Q 023703 167 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDEL 217 (278)
Q Consensus 167 D~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 217 (278)
|.++. ... ....++.....+.++|..++........++
T Consensus 256 d~~~e-----~~G--------~~~~~~~al~~~~~~G~~v~iGv~~~~~~i 293 (366)
T COG1062 256 DYAFE-----CVG--------NVEVMRQALEATHRGGTSVIIGVAGAGQEI 293 (366)
T ss_pred CEEEE-----ccC--------CHHHHHHHHHHHhcCCeEEEEecCCCCcee
Confidence 55542 221 112346777778889999988765554443
No 425
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=84.00 E-value=5 Score=34.75 Aligned_cols=96 Identities=18% Similarity=0.267 Sum_probs=53.9
Q ss_pred CCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcce-EEEEcccc----CCccCCCccEEE
Q 023703 98 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDDVL----DTKLERQFQLVM 170 (278)
Q Consensus 98 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~-~~~~~d~~----~~~~~~~fD~v~ 170 (278)
.++.+||-.|+|. |..+..+++. |..+|++++.++...+.+++ .|...+ .....+.. .......+|+++
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----lg~~~~~~~~~~~~~~~~~~~~~~~~~d~v~ 237 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARK----MGATRAVNVAKEDLRDVMAELGMTEGFDVGL 237 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCcEEecCccccHHHHHHHhcCCCCCCEEE
Confidence 4677888777643 3444555554 65468888888877766654 232211 11111110 111234678887
Q ss_pred eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
..... ...+..+.+.|+++|.++....
T Consensus 238 d~~g~-------------~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 238 EMSGA-------------PSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred ECCCC-------------HHHHHHHHHHHhcCCEEEEEec
Confidence 62111 1123678889999999988754
No 426
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=83.97 E-value=7 Score=37.29 Aligned_cols=92 Identities=17% Similarity=0.188 Sum_probs=55.5
Q ss_pred CeEEEEecCCCHHHHHH----hhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----CCCccEEEe
Q 023703 101 WSVLDIGTGNGLLLQEL----SKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVMD 171 (278)
Q Consensus 101 ~~vLDiGcG~G~~~~~l----~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----~~~fD~v~~ 171 (278)
.+|+=+|||. ++..+ .+.+. +++.+|.++..++.+++ .+...+.+|..+... -++.|++++
T Consensus 401 ~~vII~G~Gr--~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~-------~g~~v~~GDat~~~~L~~agi~~A~~vvv 470 (621)
T PRK03562 401 PRVIIAGFGR--FGQIVGRLLLSSGV-KMTVLDHDPDHIETLRK-------FGMKVFYGDATRMDLLESAGAAKAEVLIN 470 (621)
T ss_pred CcEEEEecCh--HHHHHHHHHHhCCC-CEEEEECCHHHHHHHHh-------cCCeEEEEeCCCHHHHHhcCCCcCCEEEE
Confidence 5788887765 44444 34454 79999999999998875 245789999988641 246777664
Q ss_pred CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703 172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 212 (278)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 212 (278)
.- ++.+..... ....+.+.|+-.++....+.
T Consensus 471 ~~---------~d~~~n~~i-~~~ar~~~p~~~iiaRa~d~ 501 (621)
T PRK03562 471 AI---------DDPQTSLQL-VELVKEHFPHLQIIARARDV 501 (621)
T ss_pred Ee---------CCHHHHHHH-HHHHHHhCCCCeEEEEECCH
Confidence 21 111122222 23344456776666654443
No 427
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=83.96 E-value=5 Score=35.33 Aligned_cols=98 Identities=21% Similarity=0.169 Sum_probs=54.6
Q ss_pred ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcce-EEEEcc--ccC-C--ccCCCcc
Q 023703 96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDD--VLD-T--KLERQFQ 167 (278)
Q Consensus 96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~-~~~~~d--~~~-~--~~~~~fD 167 (278)
...++.+||-+|+|. |..+..+++. |..+|+++|.++.-.+.+++ .|...+ .....+ ..+ . ...+.+|
T Consensus 181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~~g~d 256 (365)
T cd08277 181 KVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMTGGGVD 256 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHhCCCCC
Confidence 456788999887632 1233334444 65579999999988887754 232211 111100 000 0 0124588
Q ss_pred EEEeCCccceeccCCCChhhHHHHHHHHHhcccCC-cEEEEEec
Q 023703 168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPG-GLLVITSC 210 (278)
Q Consensus 168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 210 (278)
+++..-.- ...+..+.+.|+++ |.+++...
T Consensus 257 ~vid~~g~-------------~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 257 YSFECTGN-------------ADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred EEEECCCC-------------hHHHHHHHHhcccCCCEEEEEcC
Confidence 88753110 11236677888885 99887653
No 428
>PRK09291 short chain dehydrogenase; Provisional
Probab=83.74 E-value=8.8 Score=31.56 Aligned_cols=73 Identities=16% Similarity=0.276 Sum_probs=47.7
Q ss_pred CeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-----cCCCccEEEeC
Q 023703 101 WSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----LERQFQLVMDK 172 (278)
Q Consensus 101 ~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----~~~~fD~v~~~ 172 (278)
++||-.|++.| .++..+++.|+ +|++++.++...+..+......+ .++.++.+|+.+.. ...+.|+++.+
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~id~vi~~ 80 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRG-LALRVEKLDLTDAIDRAQAAEWDVDVLLNN 80 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence 47888887554 23334455675 79999988776666555544444 25788889987742 13478998877
Q ss_pred Ccc
Q 023703 173 GTL 175 (278)
Q Consensus 173 ~~~ 175 (278)
..+
T Consensus 81 ag~ 83 (257)
T PRK09291 81 AGI 83 (257)
T ss_pred CCc
Confidence 543
No 429
>PRK07677 short chain dehydrogenase; Provisional
Probab=83.62 E-value=6.7 Score=32.31 Aligned_cols=72 Identities=10% Similarity=0.126 Sum_probs=48.9
Q ss_pred CeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CCCc
Q 023703 101 WSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQF 166 (278)
Q Consensus 101 ~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~~f 166 (278)
+++|-.|++.| .++..+++.|. +|++++.++...+.+.+.+...+ .++.++.+|+.+... -++.
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFP-GQVLTVQMDVRNPEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 57888888665 34455666676 89999998877766665554433 357888999876421 1467
Q ss_pred cEEEeCCc
Q 023703 167 QLVMDKGT 174 (278)
Q Consensus 167 D~v~~~~~ 174 (278)
|+++.+..
T Consensus 80 d~lI~~ag 87 (252)
T PRK07677 80 DALINNAA 87 (252)
T ss_pred cEEEECCC
Confidence 99887643
No 430
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=83.54 E-value=14 Score=36.00 Aligned_cols=109 Identities=16% Similarity=0.185 Sum_probs=71.4
Q ss_pred CeEEEEecCCC--HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC-------C-C---------cceEEEEccccCCc
Q 023703 101 WSVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-------G-F---------SCIKFLVDDVLDTK 161 (278)
Q Consensus 101 ~~vLDiGcG~G--~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~-------~-~---------~~~~~~~~d~~~~~ 161 (278)
.+|.-||+|+= .++..++..|+ +|+.+|.+++.++.+..++... + + .++++. .|...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~-- 389 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAG-- 389 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH--
Confidence 57999999984 45556777787 8999999999998877664321 1 0 112211 22211
Q ss_pred cCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHh
Q 023703 162 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS 222 (278)
Q Consensus 162 ~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 222 (278)
-...|+|+.. + +++.+-...++.++-++++|+.++...+.+-+..++...+.
T Consensus 390 -~~~aDlViEa-----v---~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~ 441 (715)
T PRK11730 390 -FERVDVVVEA-----V---VENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALK 441 (715)
T ss_pred -hcCCCEEEec-----c---cCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcC
Confidence 1346777753 2 23344556788999999999988877777777777766543
No 431
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=83.54 E-value=8.9 Score=32.20 Aligned_cols=63 Identities=17% Similarity=0.150 Sum_probs=38.4
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCC------CCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCc
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQG------FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK 161 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~------~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~ 161 (278)
.++..++|+|||.|.++..++..- ...++.||-...-. .+-........ ..+.=+..|+.++.
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDLD 86 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeeccc
Confidence 456689999999999999988752 24789999855322 22222222210 12444556665543
No 432
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=83.53 E-value=1.3 Score=36.85 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=32.1
Q ss_pred CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhh
Q 023703 99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN 143 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~ 143 (278)
+..+++|+.||+|.++..+...+ .+|+.-|+++..+...+..++
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~~~-~~vi~ND~~~~l~~~~~~~l~ 63 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQPG-KRVIINDINPDLINFWKAVLK 63 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC---S-SEEEEEES-HHHHHHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhcccc-cceeeeechHHHHHHHHHHHh
Confidence 56799999999999999987764 489999999998887774444
No 433
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=83.46 E-value=3.7 Score=36.25 Aligned_cols=110 Identities=15% Similarity=0.178 Sum_probs=72.5
Q ss_pred ccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhh-------hCCC--cceEEEEccccCCcc---
Q 023703 96 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLAN-------RDGF--SCIKFLVDDVLDTKL--- 162 (278)
Q Consensus 96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~-------~~~~--~~~~~~~~d~~~~~~--- 162 (278)
+..++....|+|+|.|.....++.. ++..-+|+++....-+.+..+.+ ..|- ..+..++++..+...
T Consensus 189 ~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~e 268 (419)
T KOG3924|consen 189 KLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTE 268 (419)
T ss_pred ccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHH
Confidence 3467789999999999998888877 55678888887665555543322 2222 237888888877542
Q ss_pred -CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703 163 -ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 213 (278)
Q Consensus 163 -~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 213 (278)
....++|+.+.+. +++ ..... +.++..-+++|-+++-..+-.+
T Consensus 269 I~~eatvi~vNN~~----Fdp---~L~lr-~~eil~~ck~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 269 IQTEATVIFVNNVA----FDP---ELKLR-SKEILQKCKDGTRIISSKPLVP 312 (419)
T ss_pred HhhcceEEEEeccc----CCH---HHHHh-hHHHHhhCCCcceEeccccccc
Confidence 3556788877543 122 12222 2577888899999888765444
No 434
>PRK07102 short chain dehydrogenase; Provisional
Probab=83.41 E-value=6.5 Score=32.13 Aligned_cols=72 Identities=15% Similarity=0.068 Sum_probs=46.0
Q ss_pred CeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc--------CCCccEE
Q 023703 101 WSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--------ERQFQLV 169 (278)
Q Consensus 101 ~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~--------~~~fD~v 169 (278)
++|+-.|+..| .++..+++.|+ +|++++.++...+...+.....+-.++.++.+|+.+... ...+|++
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v 80 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA-RLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIV 80 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence 36887885543 23444555675 799999998766554444433322468899999987531 2357888
Q ss_pred EeCC
Q 023703 170 MDKG 173 (278)
Q Consensus 170 ~~~~ 173 (278)
+.+.
T Consensus 81 v~~a 84 (243)
T PRK07102 81 LIAV 84 (243)
T ss_pred EECC
Confidence 8654
No 435
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=83.30 E-value=15 Score=33.29 Aligned_cols=64 Identities=16% Similarity=0.132 Sum_probs=44.0
Q ss_pred CCeEEEEecCCCHHHHHHhhC----CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----CCCccEEE
Q 023703 100 SWSVLDIGTGNGLLLQELSKQ----GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVM 170 (278)
Q Consensus 100 ~~~vLDiGcG~G~~~~~l~~~----~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----~~~fD~v~ 170 (278)
..+|+=+|+ |.++..+++. |. .|+.+|.++..++.+++.. .++.++.+|..+... -..+|.++
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~-~v~vid~~~~~~~~~~~~~-----~~~~~i~gd~~~~~~L~~~~~~~a~~vi 302 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGY-SVKLIERDPERAEELAEEL-----PNTLVLHGDGTDQELLEEEGIDEADAFI 302 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHC-----CCCeEEECCCCCHHHHHhcCCccCCEEE
Confidence 456777766 6666665553 54 7999999999888777642 246788999876531 24677777
Q ss_pred e
Q 023703 171 D 171 (278)
Q Consensus 171 ~ 171 (278)
+
T Consensus 303 ~ 303 (453)
T PRK09496 303 A 303 (453)
T ss_pred E
Confidence 5
No 436
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=83.23 E-value=4.4 Score=35.29 Aligned_cols=98 Identities=22% Similarity=0.210 Sum_probs=55.4
Q ss_pred ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccC----CccCCCccE
Q 023703 96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLD----TKLERQFQL 168 (278)
Q Consensus 96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~----~~~~~~fD~ 168 (278)
...++.+||-.|+|. |..+..+++. |...|++++.++...+.+++. |.+. +.....+..+ ......+|+
T Consensus 169 ~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~l~~~~~~~~~d~ 244 (351)
T cd08233 169 GFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL----GATIVLDPTEVDVVAEVRKLTGGGGVDV 244 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEECCCccCHHHHHHHHhCCCCCCE
Confidence 446778888887531 2333344444 654799999998888877542 3221 1111111111 111234888
Q ss_pred EEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 169 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 169 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
++..... ...++.+.+.|+++|.++....
T Consensus 245 vid~~g~-------------~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 245 SFDCAGV-------------QATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred EEECCCC-------------HHHHHHHHHhccCCCEEEEEcc
Confidence 8864211 1123678889999999887654
No 437
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=83.09 E-value=5.5 Score=30.26 Aligned_cols=73 Identities=18% Similarity=0.257 Sum_probs=51.0
Q ss_pred eEEEEecCCC---HHHHHHhhCCCCcEEEEeCC--hHHHHHHHHHhhhCCCcceEEEEccccCCc-----------cCCC
Q 023703 102 SVLDIGTGNG---LLLQELSKQGFSDLTGVDYS--EDAINLAQSLANRDGFSCIKFLVDDVLDTK-----------LERQ 165 (278)
Q Consensus 102 ~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s--~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~ 165 (278)
++|=.|+++| .++..++++|...|+.+..+ ....+.....++..+ .++.+..+|+.+.. ..++
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG-AKITFIECDLSDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 5777787766 45566667766688999988 555665555565555 57999999988752 1367
Q ss_pred ccEEEeCCcc
Q 023703 166 FQLVMDKGTL 175 (278)
Q Consensus 166 fD~v~~~~~~ 175 (278)
.|+++.+...
T Consensus 81 ld~li~~ag~ 90 (167)
T PF00106_consen 81 LDILINNAGI 90 (167)
T ss_dssp ESEEEEECSC
T ss_pred cccccccccc
Confidence 9999876543
No 438
>PRK07035 short chain dehydrogenase; Provisional
Probab=83.06 E-value=7.6 Score=31.91 Aligned_cols=74 Identities=12% Similarity=0.158 Sum_probs=51.0
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 164 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~ 164 (278)
++++||-.|+++| .++..+++.|+ +|+.++.++..++...+.+...+ .++.++..|+.+... -+
T Consensus 7 ~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 84 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAG-GKAEALACHIGEMEQIDALFAHIRERHG 84 (252)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4568888888766 34555666776 89999999877776666555443 256778888876421 14
Q ss_pred CccEEEeCCc
Q 023703 165 QFQLVMDKGT 174 (278)
Q Consensus 165 ~fD~v~~~~~ 174 (278)
+.|+++.+..
T Consensus 85 ~id~li~~ag 94 (252)
T PRK07035 85 RLDILVNNAA 94 (252)
T ss_pred CCCEEEECCC
Confidence 6899887654
No 439
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=83.06 E-value=7.1 Score=33.17 Aligned_cols=106 Identities=18% Similarity=0.185 Sum_probs=60.9
Q ss_pred CeEEEEecCC--CHHHHHHhhCCCC-cEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccce
Q 023703 101 WSVLDIGTGN--GLLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA 177 (278)
Q Consensus 101 ~~vLDiGcG~--G~~~~~l~~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~ 177 (278)
.+|+=+|.|- |.++..+...|.. .+++.|.+...++.+.+ .++ .....+..........|+|+..-++.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lgv---~d~~~~~~~~~~~~~aD~VivavPi~- 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LGV---IDELTVAGLAEAAAEADLVIVAVPIE- 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cCc---ccccccchhhhhcccCCEEEEeccHH-
Confidence 3677777653 3555566666653 58999999888877764 222 11111110011223468888654432
Q ss_pred eccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhhhh
Q 023703 178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLS 225 (278)
Q Consensus 178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 225 (278)
....+++++...|++|..+ ++.........+.+..+.
T Consensus 76 ---------~~~~~l~~l~~~l~~g~iv--~Dv~S~K~~v~~a~~~~~ 112 (279)
T COG0287 76 ---------ATEEVLKELAPHLKKGAIV--TDVGSVKSSVVEAMEKYL 112 (279)
T ss_pred ---------HHHHHHHHhcccCCCCCEE--EecccccHHHHHHHHHhc
Confidence 5566778888888998743 444444555555555544
No 440
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=82.98 E-value=8.9 Score=32.93 Aligned_cols=88 Identities=17% Similarity=0.211 Sum_probs=50.7
Q ss_pred CeEEEEecCCC--HHHHHHhhCCC-CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccce
Q 023703 101 WSVLDIGTGNG--LLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA 177 (278)
Q Consensus 101 ~~vLDiGcG~G--~~~~~l~~~~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~ 177 (278)
.+|.=||+|.- .++..+...|. .+|+++|.++..++.+++ .+.. .. ...+..+ .-...|+|+..-+..
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~-~~-~~~~~~~--~~~~aDvViiavp~~- 77 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLG-DR-VTTSAAE--AVKGADLVILCVPVG- 77 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCC-ce-ecCCHHH--HhcCCCEEEECCCHH-
Confidence 47889998862 34445555553 379999999988776653 2321 11 1112111 113468887643321
Q ss_pred eccCCCChhhHHHHHHHHHhcccCCcEEE
Q 023703 178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLV 206 (278)
Q Consensus 178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 206 (278)
....+++.+...+++|+.++
T Consensus 78 ---------~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 78 ---------ASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred ---------HHHHHHHHHHhhCCCCCEEE
Confidence 23345567777888887554
No 441
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=82.95 E-value=18 Score=31.01 Aligned_cols=74 Identities=18% Similarity=0.237 Sum_probs=43.4
Q ss_pred CCCeEEEEecCCCHHHHHHhh----CCCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCcc----CCCccEE
Q 023703 99 SSWSVLDIGTGNGLLLQELSK----QGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL----ERQFQLV 169 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l~~----~~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~~----~~~fD~v 169 (278)
.+++||-.| |+|.++..++. .|+ +|+++..++...+.........+. .++.++.+|+.+... -...|+|
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v 81 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGY-TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETV 81 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCC-EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEE
Confidence 356888887 45665555544 465 787777665543333222211121 357889999987531 1357888
Q ss_pred EeCCc
Q 023703 170 MDKGT 174 (278)
Q Consensus 170 ~~~~~ 174 (278)
+....
T Consensus 82 ih~A~ 86 (325)
T PLN02989 82 FHTAS 86 (325)
T ss_pred EEeCC
Confidence 86654
No 442
>PRK07063 short chain dehydrogenase; Provisional
Probab=82.54 E-value=8.3 Score=31.88 Aligned_cols=74 Identities=15% Similarity=0.227 Sum_probs=51.6
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhh--CCCcceEEEEccccCCcc-----------
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANR--DGFSCIKFLVDDVLDTKL----------- 162 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~--~~~~~~~~~~~d~~~~~~----------- 162 (278)
.++++|-.|++.| .++..++++|+ +|+.++.++..++...+.+.. .+ .++.++.+|+.+...
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAG-ARVLAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCC-ceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4678998888665 34555666776 799999998877776666544 22 357888999977521
Q ss_pred CCCccEEEeCCc
Q 023703 163 ERQFQLVMDKGT 174 (278)
Q Consensus 163 ~~~fD~v~~~~~ 174 (278)
.++.|.++.+..
T Consensus 84 ~g~id~li~~ag 95 (260)
T PRK07063 84 FGPLDVLVNNAG 95 (260)
T ss_pred hCCCcEEEECCC
Confidence 146898887654
No 443
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=82.52 E-value=6.8 Score=33.96 Aligned_cols=97 Identities=22% Similarity=0.276 Sum_probs=53.5
Q ss_pred cCCCCeEEEEecC-CCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccC----CccCCCccEE
Q 023703 97 YLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLD----TKLERQFQLV 169 (278)
Q Consensus 97 ~~~~~~vLDiGcG-~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~----~~~~~~fD~v 169 (278)
..++.+||-.|+| .|..+..+++. |...|++++-++...+.+++. +... +.....+..+ ......+|++
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~l~~~~~~~~~d~v 234 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKM----GATYVVNPFKEDVVKEVADLTDGEGVDVF 234 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCcEEEcccccCHHHHHHHhcCCCCCCEE
Confidence 4567788776653 23344445554 643488898888777766542 3211 1111112111 1123468888
Q ss_pred EeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 170 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
+....- ...+..+.+.|+++|+++....
T Consensus 235 ld~~g~-------------~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 235 LEMSGA-------------PKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred EECCCC-------------HHHHHHHHHhhcCCCEEEEEcc
Confidence 864110 1123678888999999887653
No 444
>PRK06500 short chain dehydrogenase; Provisional
Probab=82.32 E-value=25 Score=28.57 Aligned_cols=72 Identities=13% Similarity=0.111 Sum_probs=45.4
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 164 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~ 164 (278)
++++||-.|++.| .++..+++.|+ +|++++.++..++...+.. + .++.++.+|+.+... .+
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARAEL---G-ESALVIRADAGDVAAQKALAQALAEAFG 79 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHh---C-CceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 4567888887654 34445566676 7999998876655444332 2 256778888876421 24
Q ss_pred CccEEEeCCcc
Q 023703 165 QFQLVMDKGTL 175 (278)
Q Consensus 165 ~fD~v~~~~~~ 175 (278)
+.|+++.+...
T Consensus 80 ~id~vi~~ag~ 90 (249)
T PRK06500 80 RLDAVFINAGV 90 (249)
T ss_pred CCCEEEECCCC
Confidence 68988876543
No 445
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=82.18 E-value=3.3 Score=36.40 Aligned_cols=97 Identities=20% Similarity=0.189 Sum_probs=56.1
Q ss_pred cccCCCCeEEEEecC-CCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEc---ccc----CCccCCC
Q 023703 95 DKYLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD---DVL----DTKLERQ 165 (278)
Q Consensus 95 ~~~~~~~~vLDiGcG-~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~---d~~----~~~~~~~ 165 (278)
....++.+||-.|+| .|..+..+++. |...|++++.++...+.+++ .+.. .++.. +.. .......
T Consensus 178 ~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~----~g~~--~vv~~~~~~~~~~l~~~~~~~~ 251 (363)
T cd08279 178 ARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR----FGAT--HTVNASEDDAVEAVRDLTDGRG 251 (363)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----hCCe--EEeCCCCccHHHHHHHHcCCCC
Confidence 344677888888764 24444555555 65459999988887776643 2321 11111 110 1111345
Q ss_pred ccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703 166 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210 (278)
Q Consensus 166 fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 210 (278)
+|+++....- ...+..+.+.|+++|+++....
T Consensus 252 vd~vld~~~~-------------~~~~~~~~~~l~~~G~~v~~g~ 283 (363)
T cd08279 252 ADYAFEAVGR-------------AATIRQALAMTRKGGTAVVVGM 283 (363)
T ss_pred CCEEEEcCCC-------------hHHHHHHHHHhhcCCeEEEEec
Confidence 8888753210 1223678888999999987643
No 446
>PRK12744 short chain dehydrogenase; Provisional
Probab=82.15 E-value=27 Score=28.75 Aligned_cols=108 Identities=11% Similarity=0.125 Sum_probs=57.3
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCC----hHHHHHHHHHhhhCCCcceEEEEccccCCcc---------
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYS----EDAINLAQSLANRDGFSCIKFLVDDVLDTKL--------- 162 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s----~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~--------- 162 (278)
.++++|-.|++.| .++..+++.|+ +++.++.+ ....+...+.+...+ .++.++..|+.+...
T Consensus 7 ~~k~vlItGa~~gIG~~~a~~l~~~G~-~vv~i~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~ 84 (257)
T PRK12744 7 KGKVVLIAGGAKNLGGLIARDLAAQGA-KAVAIHYNSAASKADAEETVAAVKAAG-AKAVAFQADLTTAAAVEKLFDDAK 84 (257)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-cEEEEecCCccchHHHHHHHHHHHHhC-CcEEEEecCcCCHHHHHHHHHHHH
Confidence 4568998887555 33444555576 56666533 233333333333333 257888999986421
Q ss_pred --CCCccEEEeCCcccee-ccCCCCh-----------hhHHHHHHHHHhcccCCcEEEEE
Q 023703 163 --ERQFQLVMDKGTLDAI-GLHPDGP-----------LKRIMYWDSVSKLVAPGGLLVIT 208 (278)
Q Consensus 163 --~~~fD~v~~~~~~~~~-~~~~~~~-----------~~~~~~l~~~~~~LkpgG~l~~~ 208 (278)
.++.|+++.+...... .+..... .....+++.+.+.++++|.+++.
T Consensus 85 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~ 144 (257)
T PRK12744 85 AAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTL 144 (257)
T ss_pred HhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEE
Confidence 1468998877643211 0111111 11123456666777777776543
No 447
>PLN02702 L-idonate 5-dehydrogenase
Probab=82.11 E-value=9.7 Score=33.39 Aligned_cols=97 Identities=18% Similarity=0.220 Sum_probs=54.7
Q ss_pred ccCCCCeEEEEecC-CCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEE---ccccC----C--ccCC
Q 023703 96 KYLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLV---DDVLD----T--KLER 164 (278)
Q Consensus 96 ~~~~~~~vLDiGcG-~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~---~d~~~----~--~~~~ 164 (278)
+..++.+||-+|+| .|..+..+++. |...++++|.++...+.+++ .+.+.+.... .+..+ . ...+
T Consensus 178 ~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (364)
T PLN02702 178 NIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQ----LGADEIVLVSTNIEDVESEVEEIQKAMGG 253 (364)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEEecCcccccHHHHHHHHhhhcCC
Confidence 44567788888753 23344445554 66568999998877776654 2322221111 11111 0 1124
Q ss_pred CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 165 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 165 ~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
.+|+++.... . ...+..+.+.|+++|+++...
T Consensus 254 ~~d~vid~~g------------~-~~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 254 GIDVSFDCVG------------F-NKTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred CCCEEEECCC------------C-HHHHHHHHHHHhcCCEEEEEc
Confidence 5788875311 0 112377888999999988764
No 448
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=82.10 E-value=19 Score=35.05 Aligned_cols=108 Identities=14% Similarity=0.062 Sum_probs=70.4
Q ss_pred CeEEEEecCCC--HHHHHHh-hCCCCcEEEEeCChHHHHHHHHHhhhC-------C-C---------cceEEEEccccCC
Q 023703 101 WSVLDIGTGNG--LLLQELS-KQGFSDLTGVDYSEDAINLAQSLANRD-------G-F---------SCIKFLVDDVLDT 160 (278)
Q Consensus 101 ~~vLDiGcG~G--~~~~~l~-~~~~~~v~~~D~s~~~i~~a~~~~~~~-------~-~---------~~~~~~~~d~~~~ 160 (278)
.+|.-||+|+= .++..++ ..|. .|+..|.+++.++.+..++... + + .++++. .|..
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~-- 385 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYR-- 385 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChH--
Confidence 57999999983 4555566 5576 8999999999998886655321 1 0 112221 1211
Q ss_pred ccCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHH
Q 023703 161 KLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV 221 (278)
Q Consensus 161 ~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 221 (278)
.-...|+|+.. + +++..-...+++++-++++|+.+|...+..-+..++...+
T Consensus 386 -~~~~aDlViEa-----v---~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~ 437 (708)
T PRK11154 386 -GFKHADVVIEA-----V---FEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAA 437 (708)
T ss_pred -HhccCCEEeec-----c---cccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhc
Confidence 11346777753 2 2333455678899999999999888777777777766654
No 449
>PRK05876 short chain dehydrogenase; Provisional
Probab=82.07 E-value=8.5 Score=32.36 Aligned_cols=75 Identities=13% Similarity=0.148 Sum_probs=51.2
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 164 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~ 164 (278)
.++++|-.|+++| .++..|++.|+ +|+.+|.++..++...+.+...+ .++.++.+|+.+... .+
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 82 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEG-FDVHGVMCDVRHREEVTHLADEAFRLLG 82 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CeEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 4568888887665 34555666676 79999999877776655554444 257788999977421 14
Q ss_pred CccEEEeCCcc
Q 023703 165 QFQLVMDKGTL 175 (278)
Q Consensus 165 ~fD~v~~~~~~ 175 (278)
+.|+++.+..+
T Consensus 83 ~id~li~nAg~ 93 (275)
T PRK05876 83 HVDVVFSNAGI 93 (275)
T ss_pred CCCEEEECCCc
Confidence 67999887654
No 450
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=81.94 E-value=6.8 Score=34.52 Aligned_cols=98 Identities=19% Similarity=0.215 Sum_probs=55.5
Q ss_pred ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEc--cccCC---ccCCCcc
Q 023703 96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVD--DVLDT---KLERQFQ 167 (278)
Q Consensus 96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~--d~~~~---~~~~~fD 167 (278)
...++.+||-+|+|. |..+..+++. |..+|+++|.++.-.+.+++ .|... +..... +..+. ...+.+|
T Consensus 183 ~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~~~g~d 258 (368)
T cd08300 183 KVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMTDGGVD 258 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHhCCCCc
Confidence 456788999998632 2333344444 65479999999998887754 33322 111111 11110 0123688
Q ss_pred EEEeCCccceeccCCCChhhHHHHHHHHHhcccCC-cEEEEEec
Q 023703 168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPG-GLLVITSC 210 (278)
Q Consensus 168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 210 (278)
+|+..-. . ...+..+.+.|+++ |+++....
T Consensus 259 ~vid~~g------------~-~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 259 YTFECIG------------N-VKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred EEEECCC------------C-hHHHHHHHHhhccCCCeEEEEcc
Confidence 8875311 0 11336778889887 98887653
No 451
>PRK08862 short chain dehydrogenase; Provisional
Probab=81.79 E-value=8 Score=31.52 Aligned_cols=73 Identities=10% Similarity=0.007 Sum_probs=52.3
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 164 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~ 164 (278)
+++++|-.|++.| .++..+++.|+ +|+.++.++..++...+.....+ ..+.....|+.+... -+
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALT-DNVYSFQLKDFSQESIRHLFDAIEQQFN 81 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC-CCeEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4678999999887 35666777786 79999999988877766665544 246667778766420 14
Q ss_pred -CccEEEeCC
Q 023703 165 -QFQLVMDKG 173 (278)
Q Consensus 165 -~fD~v~~~~ 173 (278)
..|+++.+.
T Consensus 82 ~~iD~li~na 91 (227)
T PRK08862 82 RAPDVLVNNW 91 (227)
T ss_pred CCCCEEEECC
Confidence 789988875
No 452
>PRK06125 short chain dehydrogenase; Provisional
Probab=81.56 E-value=9.4 Score=31.54 Aligned_cols=75 Identities=13% Similarity=0.132 Sum_probs=49.8
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-------cCCCccE
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-------LERQFQL 168 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-------~~~~fD~ 168 (278)
.++++|-.|++.| .++..+++.|+ +|++++.++...+.+...+....-.++.++..|+.+.. .-++.|+
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~ 84 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDI 84 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence 4678898897655 23444566676 89999999887766655554332135778888987642 1256888
Q ss_pred EEeCCc
Q 023703 169 VMDKGT 174 (278)
Q Consensus 169 v~~~~~ 174 (278)
++.+..
T Consensus 85 lv~~ag 90 (259)
T PRK06125 85 LVNNAG 90 (259)
T ss_pred EEECCC
Confidence 887654
No 453
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=81.43 E-value=9.1 Score=31.78 Aligned_cols=75 Identities=15% Similarity=0.140 Sum_probs=53.0
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 164 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~ 164 (278)
.++++|-.|++.| .++..++.+|+ +|+.++.++..++.+...+...+ .++.++.+|+.+... -+
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 86 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELG-IEAHGYVCDVTDEDGVQAMVSQIEKEVG 86 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 4668999998776 34556677776 79999999887777766665544 257888999986421 14
Q ss_pred CccEEEeCCcc
Q 023703 165 QFQLVMDKGTL 175 (278)
Q Consensus 165 ~fD~v~~~~~~ 175 (278)
+.|+++.+...
T Consensus 87 ~id~li~~ag~ 97 (265)
T PRK07097 87 VIDILVNNAGI 97 (265)
T ss_pred CCCEEEECCCC
Confidence 68998876543
No 454
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=81.38 E-value=5.9 Score=31.47 Aligned_cols=69 Identities=19% Similarity=0.120 Sum_probs=46.7
Q ss_pred CCCCeEEEEecC-CCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccc
Q 023703 98 LSSWSVLDIGTG-NGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD 176 (278)
Q Consensus 98 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~ 176 (278)
..++.||-+|.- +|.+...+... ..+|+.+|+.|.+-.... .+++|...- ..+.+.+|+|+..-.+.
T Consensus 43 ~E~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r~~lp--------~~v~Fr~~~---~~~~G~~DlivDlTGlG 110 (254)
T COG4017 43 EEFKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMRGFLP--------NNVKFRNLL---KFIRGEVDLIVDLTGLG 110 (254)
T ss_pred cCcceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHHhcCC--------CCccHhhhc---CCCCCceeEEEeccccC
Confidence 356789999985 67777777766 358999999998654432 246665551 23467899999765544
Q ss_pred ee
Q 023703 177 AI 178 (278)
Q Consensus 177 ~~ 178 (278)
.+
T Consensus 111 G~ 112 (254)
T COG4017 111 GI 112 (254)
T ss_pred CC
Confidence 33
No 455
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.35 E-value=13 Score=32.02 Aligned_cols=40 Identities=20% Similarity=0.312 Sum_probs=29.9
Q ss_pred CeEEEEecCCC--HHHHHHhhCCCCcEEEEeCChHHHHHHHHH
Q 023703 101 WSVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSL 141 (278)
Q Consensus 101 ~~vLDiGcG~G--~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~ 141 (278)
.+|.=||+|.- .++..++..|+ +|+++|.++..++.+++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~~~~~~~~ 46 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGALERARGV 46 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHH
Confidence 36888888853 34455666675 799999999998888764
No 456
>PRK07791 short chain dehydrogenase; Provisional
Probab=81.35 E-value=13 Score=31.52 Aligned_cols=75 Identities=15% Similarity=0.132 Sum_probs=48.4
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCCh---------HHHHHHHHHhhhCCCcceEEEEccccCCc-----
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSE---------DAINLAQSLANRDGFSCIKFLVDDVLDTK----- 161 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~---------~~i~~a~~~~~~~~~~~~~~~~~d~~~~~----- 161 (278)
+++++|-.|++.| .++..+++.|+ +|+.++.+. ..++.+.+.+...+ .++.++.+|+.+..
T Consensus 5 ~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~Dv~~~~~v~~~ 82 (286)
T PRK07791 5 DGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSASGGSAAQAVVDEIVAAG-GEAVANGDDIADWDGAANL 82 (286)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCccccccccchhHHHHHHHHHHhcC-CceEEEeCCCCCHHHHHHH
Confidence 5678999998776 34455666776 788888764 44444444443333 25777888988742
Q ss_pred ------cCCCccEEEeCCcc
Q 023703 162 ------LERQFQLVMDKGTL 175 (278)
Q Consensus 162 ------~~~~fD~v~~~~~~ 175 (278)
..++.|+++.+..+
T Consensus 83 ~~~~~~~~g~id~lv~nAG~ 102 (286)
T PRK07791 83 VDAAVETFGGLDVLVNNAGI 102 (286)
T ss_pred HHHHHHhcCCCCEEEECCCC
Confidence 12578998887654
No 457
>PRK05854 short chain dehydrogenase; Provisional
Probab=81.12 E-value=13 Score=31.87 Aligned_cols=76 Identities=13% Similarity=0.095 Sum_probs=51.1
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC-CCcceEEEEccccCCc-----------cC
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-GFSCIKFLVDDVLDTK-----------LE 163 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~-~~~~~~~~~~d~~~~~-----------~~ 163 (278)
.++++|-.|+++| .++..|++.|+ +|+.+..++...+.+.+.+... +-.++.++.+|+.+.. ..
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~ 91 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG 91 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 4678888888766 34555666775 8999998877666555544332 1125788899998752 12
Q ss_pred CCccEEEeCCcc
Q 023703 164 RQFQLVMDKGTL 175 (278)
Q Consensus 164 ~~fD~v~~~~~~ 175 (278)
++.|+++.+...
T Consensus 92 ~~iD~li~nAG~ 103 (313)
T PRK05854 92 RPIHLLINNAGV 103 (313)
T ss_pred CCccEEEECCcc
Confidence 568999987644
No 458
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=81.01 E-value=24 Score=28.25 Aligned_cols=33 Identities=27% Similarity=0.404 Sum_probs=25.1
Q ss_pred CCCeEEEEecCC-C-HHHHHHhhCCCCcEEEEeCC
Q 023703 99 SSWSVLDIGTGN-G-LLLQELSKQGFSDLTGVDYS 131 (278)
Q Consensus 99 ~~~~vLDiGcG~-G-~~~~~l~~~~~~~v~~~D~s 131 (278)
...+|+-+|||. | ..+..++..|..+++.+|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 456899999984 2 35556777787789999988
No 459
>PRK06484 short chain dehydrogenase; Validated
Probab=80.97 E-value=27 Score=32.29 Aligned_cols=107 Identities=13% Similarity=0.156 Sum_probs=64.0
Q ss_pred CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------C
Q 023703 98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 163 (278)
Q Consensus 98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~ 163 (278)
..++.+|-.|++.| .++..++++|+ +|+.++.++..++...+.. + ..+..+..|+.+... -
T Consensus 267 ~~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 341 (520)
T PRK06484 267 ESPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAEAL---G-DEHLSVQADITDEAAVESAFAQIQARW 341 (520)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---C-CceeEEEccCCCHHHHHHHHHHHHHHc
Confidence 35678888888766 34555666776 8999999887776655433 2 245667888876521 2
Q ss_pred CCccEEEeCCccce-e-ccCCCChhh-----------HHHHHHHHHhcccCCcEEEEEe
Q 023703 164 RQFQLVMDKGTLDA-I-GLHPDGPLK-----------RIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 164 ~~fD~v~~~~~~~~-~-~~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
++.|+++.+..... . .+....... ...+.+.+...++.+|.+++.+
T Consensus 342 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~is 400 (520)
T PRK06484 342 GRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLG 400 (520)
T ss_pred CCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEEC
Confidence 56899987754321 1 111111111 1233455666667778877654
No 460
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=80.90 E-value=3.9 Score=35.63 Aligned_cols=93 Identities=24% Similarity=0.268 Sum_probs=52.6
Q ss_pred CCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC------ccCCCccEE
Q 023703 98 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT------KLERQFQLV 169 (278)
Q Consensus 98 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~------~~~~~fD~v 169 (278)
.++.+||-.|+|. |..+..+++. |..+|+.++.++...+.+++ .|.. .++..+-... ...+.+|++
T Consensus 174 ~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~~~~~~~~~~d~v 247 (350)
T cd08240 174 VADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA----AGAD--VVVNGSDPDAAKRIIKAAGGGVDAV 247 (350)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc--EEecCCCccHHHHHHHHhCCCCcEE
Confidence 4677888886532 2333344444 66579999988887777744 2321 1111111110 012267888
Q ss_pred EeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 170 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
+..... ...+..+.+.|+++|.++...
T Consensus 248 id~~g~-------------~~~~~~~~~~l~~~g~~v~~g 274 (350)
T cd08240 248 IDFVNN-------------SATASLAFDILAKGGKLVLVG 274 (350)
T ss_pred EECCCC-------------HHHHHHHHHHhhcCCeEEEEC
Confidence 753211 112377889999999988754
No 461
>PRK07814 short chain dehydrogenase; Provisional
Probab=80.89 E-value=10 Score=31.45 Aligned_cols=74 Identities=12% Similarity=0.202 Sum_probs=49.3
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 164 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~ 164 (278)
+++++|-.|++.| .++..++.+|+ +|++++.++..++...+.....+ .++.++.+|+.+... -+
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAG-RRAHVVAADLAHPEATAGLAGQAVEAFG 86 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4678888886544 23444555676 89999999877766655554333 357888899887531 14
Q ss_pred CccEEEeCCc
Q 023703 165 QFQLVMDKGT 174 (278)
Q Consensus 165 ~fD~v~~~~~ 174 (278)
++|+++.+..
T Consensus 87 ~id~vi~~Ag 96 (263)
T PRK07814 87 RLDIVVNNVG 96 (263)
T ss_pred CCCEEEECCC
Confidence 6898887643
No 462
>PRK07478 short chain dehydrogenase; Provisional
Probab=80.83 E-value=11 Score=31.09 Aligned_cols=75 Identities=11% Similarity=0.130 Sum_probs=51.6
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 164 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~ 164 (278)
+++++|-.|++.| .++..+++.|+ +|+.++.++..++.+.+.+...+ .++.++.+|+.+... .+
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEG-GEAVALAGDVRDEAYAKALVALAVERFG 82 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 4568888887665 34555666776 79999999887776666555444 357788899877421 14
Q ss_pred CccEEEeCCcc
Q 023703 165 QFQLVMDKGTL 175 (278)
Q Consensus 165 ~fD~v~~~~~~ 175 (278)
+.|+++.+...
T Consensus 83 ~id~li~~ag~ 93 (254)
T PRK07478 83 GLDIAFNNAGT 93 (254)
T ss_pred CCCEEEECCCC
Confidence 68988877643
No 463
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=80.72 E-value=7.8 Score=35.10 Aligned_cols=110 Identities=15% Similarity=0.041 Sum_probs=64.3
Q ss_pred CCCeEEEEecCCCHHHHHH--hhCC-CCcEEEEeCChHHHHHHHHHhhhC-CCcceEEEEccccCC--c--cCCCccEEE
Q 023703 99 SSWSVLDIGTGNGLLLQEL--SKQG-FSDLTGVDYSEDAINLAQSLANRD-GFSCIKFLVDDVLDT--K--LERQFQLVM 170 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~l--~~~~-~~~v~~~D~s~~~i~~a~~~~~~~-~~~~~~~~~~d~~~~--~--~~~~fD~v~ 170 (278)
.+..+.|+|.|.|.-.-.+ ...+ ...++.||.|..+......+.... ....+.....-.... + ....||+|+
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 3457888888877443333 3333 458999999999999988877641 111111111011111 1 235699999
Q ss_pred eCCccceeccCCCChhhHHHHH-HHHHhcccCCcEEEEEecCC
Q 023703 171 DKGTLDAIGLHPDGPLKRIMYW-DSVSKLVAPGGLLVITSCNS 212 (278)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~l-~~~~~~LkpgG~l~~~~~~~ 212 (278)
+...+..+.-.. .+.... ...++..++|+.+++.....
T Consensus 280 ~ah~l~~~~s~~----~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 280 CAHKLHELGSKF----SRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred eeeeeeccCCch----hhhhhhHHHHHhccCCCceEEEEecCC
Confidence 977665543111 222222 45667889999998886544
No 464
>PRK12747 short chain dehydrogenase; Provisional
Probab=80.57 E-value=30 Score=28.31 Aligned_cols=109 Identities=7% Similarity=0.056 Sum_probs=58.7
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEe-CChHHHHHHHHHhhhCCCcceEEEEccccCCcc------------
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVD-YSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL------------ 162 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D-~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~------------ 162 (278)
.++++|-.|++.| .++..+++.|+ +|+.++ .++...+.........+ ..+.....|+.+...
T Consensus 3 ~~k~~lItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (252)
T PRK12747 3 KGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRKEEAEETVYEIQSNG-GSAFSIGANLESLHGVEALYSSLDNEL 80 (252)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHHHhcC-CceEEEecccCCHHHHHHHHHHHHHHh
Confidence 3568888887766 34555666675 677764 44454444433333333 245667778765310
Q ss_pred -----CCCccEEEeCCccceec-cCCCChhhH-----------HHHHHHHHhcccCCcEEEEEe
Q 023703 163 -----ERQFQLVMDKGTLDAIG-LHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 163 -----~~~fD~v~~~~~~~~~~-~~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~ 209 (278)
..+.|+++.+..+.... +.....+.. ..+++.+.+.++.+|.++..+
T Consensus 81 ~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~is 144 (252)
T PRK12747 81 QNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINIS 144 (252)
T ss_pred hhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEEC
Confidence 02689998776542111 111111111 233455666777778777653
No 465
>PRK05693 short chain dehydrogenase; Provisional
Probab=80.54 E-value=25 Score=29.33 Aligned_cols=66 Identities=14% Similarity=0.233 Sum_probs=41.5
Q ss_pred eEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CCCcc
Q 023703 102 SVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQFQ 167 (278)
Q Consensus 102 ~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~~fD 167 (278)
++|-.|+++| .++..++..|+ +|++++.++..++.... . ++.++.+|+.+... .++.|
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~----~---~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 74 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGY-EVWATARKAEDVEALAA----A---GFTAVQLDVNDGAALARLAEELEAEHGGLD 74 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----C---CCeEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 6777776544 23344555575 89999998876554432 1 35677788876321 24689
Q ss_pred EEEeCCcc
Q 023703 168 LVMDKGTL 175 (278)
Q Consensus 168 ~v~~~~~~ 175 (278)
+++.+...
T Consensus 75 ~vi~~ag~ 82 (274)
T PRK05693 75 VLINNAGY 82 (274)
T ss_pred EEEECCCC
Confidence 99887654
No 466
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=80.50 E-value=35 Score=29.09 Aligned_cols=116 Identities=14% Similarity=0.138 Sum_probs=57.2
Q ss_pred CCCeEEEEecCCCH---HHHHHhhCCCCcEEEEeCChH---HHHHHHHHhhhCCCcceEEEEccccCCc----cCCCccE
Q 023703 99 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSED---AINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQL 168 (278)
Q Consensus 99 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~~D~s~~---~i~~a~~~~~~~~~~~~~~~~~d~~~~~----~~~~fD~ 168 (278)
+++++|-+|+| |. .+..++..|+++|+.++.++. ..+...+.+...+ ..+.+...|+.+.. .-..+|+
T Consensus 125 ~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~-~~~~~~~~d~~~~~~~~~~~~~~Di 202 (289)
T PRK12548 125 KGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEV-PECIVNVYDLNDTEKLKAEIASSDI 202 (289)
T ss_pred CCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcC-CCceeEEechhhhhHHHhhhccCCE
Confidence 46789999997 52 222345568767999999863 2222222222221 13344455554321 1135799
Q ss_pred EEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhh
Q 023703 169 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN 223 (278)
Q Consensus 169 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 223 (278)
++.+-+...-......+.. -...|.++..++=..+++....++...+.
T Consensus 203 lINaTp~Gm~~~~~~~~~~-------~~~~l~~~~~v~D~vY~P~~T~ll~~A~~ 250 (289)
T PRK12548 203 LVNATLVGMKPNDGETNIK-------DTSVFRKDLVVADTVYNPKKTKLLEDAEA 250 (289)
T ss_pred EEEeCCCCCCCCCCCCCCC-------cHHhcCCCCEEEEecCCCCCCHHHHHHHH
Confidence 9876554321100000100 01345666544333455555556665544
No 467
>PRK07774 short chain dehydrogenase; Provisional
Probab=80.00 E-value=15 Score=30.06 Aligned_cols=74 Identities=15% Similarity=0.176 Sum_probs=47.3
Q ss_pred CCCeEEEEecCCCHHHHH----HhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------C
Q 023703 99 SSWSVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 163 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~----l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~ 163 (278)
.++++|=.|+ +|.++.. ++++|. +|+.++.++...+.........+ .++.++..|+.+... .
T Consensus 5 ~~k~vlItGa-sg~iG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (250)
T PRK07774 5 DDKVAIVTGA-AGGIGQAYAEALAREGA-SVVVADINAEGAERVAKQIVADG-GTAIAVQVDVSDPDSAKAMADATVSAF 81 (250)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 4567888885 4444444 445575 89999998776655554443332 246778899887531 1
Q ss_pred CCccEEEeCCcc
Q 023703 164 RQFQLVMDKGTL 175 (278)
Q Consensus 164 ~~fD~v~~~~~~ 175 (278)
++.|+++.+...
T Consensus 82 ~~id~vi~~ag~ 93 (250)
T PRK07774 82 GGIDYLVNNAAI 93 (250)
T ss_pred CCCCEEEECCCC
Confidence 468999976653
No 468
>PRK05866 short chain dehydrogenase; Provisional
Probab=79.98 E-value=11 Score=32.16 Aligned_cols=74 Identities=15% Similarity=0.240 Sum_probs=50.1
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 164 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~ 164 (278)
.+++||-.|++.| .++..++++|+ +|+.++.++..++...+.+...+ ..+.++.+|+.+... -+
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~-~~~~~~~~Dl~d~~~v~~~~~~~~~~~g 116 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAG-GDAMAVPCDLSDLDAVDALVADVEKRIG 116 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4568898887655 34445566675 89999999887776665554433 247788899887421 14
Q ss_pred CccEEEeCCc
Q 023703 165 QFQLVMDKGT 174 (278)
Q Consensus 165 ~fD~v~~~~~ 174 (278)
..|+++.+..
T Consensus 117 ~id~li~~AG 126 (293)
T PRK05866 117 GVDILINNAG 126 (293)
T ss_pred CCCEEEECCC
Confidence 6899887653
No 469
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=79.94 E-value=20 Score=26.93 Aligned_cols=73 Identities=15% Similarity=0.181 Sum_probs=40.3
Q ss_pred CCCeEEEEecCCC--HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccc
Q 023703 99 SSWSVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD 176 (278)
Q Consensus 99 ~~~~vLDiGcG~G--~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~ 176 (278)
++.+|+-+|||.= ..+..++..+..+|+.+|.++...+...+.+.... +.....|..+. -+..|+|++.-+..
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~Dvvi~~~~~~ 92 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG---IAIAYLDLEEL--LAEADLIINTTPVG 92 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc---cceeecchhhc--cccCCEEEeCcCCC
Confidence 4578999998631 23333444444579999999877665544432211 11122222211 25689998765443
No 470
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=79.88 E-value=29 Score=29.48 Aligned_cols=95 Identities=16% Similarity=0.113 Sum_probs=51.4
Q ss_pred eEEEEecCCC--HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcce---EEE-Ecc-ccCCccCCCccEEEeCCc
Q 023703 102 SVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCI---KFL-VDD-VLDTKLERQFQLVMDKGT 174 (278)
Q Consensus 102 ~vLDiGcG~G--~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~---~~~-~~d-~~~~~~~~~fD~v~~~~~ 174 (278)
+|+=+|+|.- .++..|++.|. +|+.++.++..++..++. ++ .+ ... ... ..+......+|+|+..-.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~----g~-~~~~~~~~~~~~~~~~~~~~~~~d~vila~k 75 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNEN----GL-RLEDGEITVPVLAADDPAELGPQDLVILAVK 75 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHc----CC-cccCCceeecccCCCChhHcCCCCEEEEecc
Confidence 5788888754 24444555665 799999877766655542 22 11 000 000 011111156888775322
Q ss_pred cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703 175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 212 (278)
Q Consensus 175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 212 (278)
. .....+++.+...+.++..+++.....
T Consensus 76 ~----------~~~~~~~~~l~~~l~~~~~iv~~~nG~ 103 (304)
T PRK06522 76 A----------YQLPAALPSLAPLLGPDTPVLFLQNGV 103 (304)
T ss_pred c----------ccHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 1 134555677888888877666554433
No 471
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.82 E-value=11 Score=32.52 Aligned_cols=100 Identities=16% Similarity=0.128 Sum_probs=56.4
Q ss_pred cCCCCeEEEEec-CCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEE-EccccCCccCCCccEEEeC
Q 023703 97 YLSSWSVLDIGT-GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFL-VDDVLDTKLERQFQLVMDK 172 (278)
Q Consensus 97 ~~~~~~vLDiGc-G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~-~~d~~~~~~~~~fD~v~~~ 172 (278)
..||++|--+|. |-|.++..++.. |. +|+++|-+...-+.+-++ .|.+. +.+. ..|..+. ..+..|.++..
T Consensus 179 ~~pG~~vgI~GlGGLGh~aVq~AKAMG~-rV~vis~~~~kkeea~~~---LGAd~fv~~~~d~d~~~~-~~~~~dg~~~~ 253 (360)
T KOG0023|consen 179 LGPGKWVGIVGLGGLGHMAVQYAKAMGM-RVTVISTSSKKKEEAIKS---LGADVFVDSTEDPDIMKA-IMKTTDGGIDT 253 (360)
T ss_pred CCCCcEEEEecCcccchHHHHHHHHhCc-EEEEEeCCchhHHHHHHh---cCcceeEEecCCHHHHHH-HHHhhcCccee
Confidence 357777777775 568888888887 75 899999998666655544 33222 1111 1111110 11233333321
Q ss_pred CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703 173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 212 (278)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 212 (278)
-+ .+ ....+..+.+.||++|.+++.....
T Consensus 254 v~--~~---------a~~~~~~~~~~lk~~Gt~V~vg~p~ 282 (360)
T KOG0023|consen 254 VS--NL---------AEHALEPLLGLLKVNGTLVLVGLPE 282 (360)
T ss_pred ee--ec---------cccchHHHHHHhhcCCEEEEEeCcC
Confidence 00 00 0111266888999999999986444
No 472
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=79.79 E-value=37 Score=29.56 Aligned_cols=74 Identities=12% Similarity=0.084 Sum_probs=45.1
Q ss_pred CCCCeEEEEecCCCHHHHHHhh----CCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc----CCCccEE
Q 023703 98 LSSWSVLDIGTGNGLLLQELSK----QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLV 169 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~----~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~----~~~fD~v 169 (278)
..+.+||-.|. +|.++..+++ +|. +|++++.++...+.....+.. + .++.++.+|+.+... -..+|.|
T Consensus 8 ~~~~~vLVtG~-~GfIG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~Dl~~~~~~~~~~~~~d~V 83 (353)
T PLN02896 8 SATGTYCVTGA-TGYIGSWLVKLLLQRGY-TVHATLRDPAKSLHLLSKWKE-G-DRLRLFRADLQEEGSFDEAVKGCDGV 83 (353)
T ss_pred cCCCEEEEECC-CcHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHhhcc-C-CeEEEEECCCCCHHHHHHHHcCCCEE
Confidence 35668888874 6766665555 465 799888776543332222211 1 358889999887531 2357888
Q ss_pred EeCCcc
Q 023703 170 MDKGTL 175 (278)
Q Consensus 170 ~~~~~~ 175 (278)
+-....
T Consensus 84 ih~A~~ 89 (353)
T PLN02896 84 FHVAAS 89 (353)
T ss_pred EECCcc
Confidence 865543
No 473
>PRK06940 short chain dehydrogenase; Provisional
Probab=79.76 E-value=20 Score=30.03 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=44.5
Q ss_pred eEEEEecCCCHHHHHHhh---CCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc----------CCCccE
Q 023703 102 SVLDIGTGNGLLLQELSK---QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------ERQFQL 168 (278)
Q Consensus 102 ~vLDiGcG~G~~~~~l~~---~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~----------~~~fD~ 168 (278)
.+|--|+ |.++..++. .|. +|+.+|.++..++.+.+.+...+ .++.++.+|+.+... .++.|+
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~-~Vv~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~ 79 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGK-KVLLADYNEENLEAAAKTLREAG-FDVSTQEVDVSSRESVKALAATAQTLGPVTG 79 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcC-CeEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence 4555564 345555544 364 89999998876665555554433 257788899877421 146898
Q ss_pred EEeCCcc
Q 023703 169 VMDKGTL 175 (278)
Q Consensus 169 v~~~~~~ 175 (278)
++.+..+
T Consensus 80 li~nAG~ 86 (275)
T PRK06940 80 LVHTAGV 86 (275)
T ss_pred EEECCCc
Confidence 8877643
No 474
>PRK07831 short chain dehydrogenase; Provisional
Probab=79.63 E-value=14 Score=30.62 Aligned_cols=76 Identities=16% Similarity=0.181 Sum_probs=50.7
Q ss_pred CCCeEEEEec-CCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhh-CCCcceEEEEccccCCcc-----------
Q 023703 99 SSWSVLDIGT-GNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANR-DGFSCIKFLVDDVLDTKL----------- 162 (278)
Q Consensus 99 ~~~~vLDiGc-G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~-~~~~~~~~~~~d~~~~~~----------- 162 (278)
+++++|-.|+ |+| .++..++.+|+ +|+.+|.++..++...+.++. .+..++.++.+|+.+...
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 94 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVER 94 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4678888886 344 34555666776 799999988877766665543 232357888999876421
Q ss_pred CCCccEEEeCCcc
Q 023703 163 ERQFQLVMDKGTL 175 (278)
Q Consensus 163 ~~~fD~v~~~~~~ 175 (278)
.++.|+++.+...
T Consensus 95 ~g~id~li~~ag~ 107 (262)
T PRK07831 95 LGRLDVLVNNAGL 107 (262)
T ss_pred cCCCCEEEECCCC
Confidence 1468988877653
No 475
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=79.58 E-value=35 Score=28.53 Aligned_cols=75 Identities=16% Similarity=0.089 Sum_probs=44.8
Q ss_pred CCCCeEEEEecC-CCH----HHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-----------
Q 023703 98 LSSWSVLDIGTG-NGL----LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----------- 161 (278)
Q Consensus 98 ~~~~~vLDiGcG-~G~----~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~----------- 161 (278)
..++++|-.|++ ++. ++..+++.|+ +|+.+..++...+.+++..+..+ ...++.+|+.+..
T Consensus 8 ~~~k~~lItGas~~~GIG~aia~~la~~G~-~V~l~~r~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~ 84 (272)
T PRK08159 8 MAGKRGLILGVANNRSIAWGIAKACRAAGA-ELAFTYQGDALKKRVEPLAAELG--AFVAGHCDVTDEASIDAVFETLEK 84 (272)
T ss_pred ccCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCchHHHHHHHHHHHhcC--CceEEecCCCCHHHHHHHHHHHHH
Confidence 356789999985 233 3445566676 78877655433344443333322 3456788987642
Q ss_pred cCCCccEEEeCCcc
Q 023703 162 LERQFQLVMDKGTL 175 (278)
Q Consensus 162 ~~~~fD~v~~~~~~ 175 (278)
..++.|+++.+..+
T Consensus 85 ~~g~iD~lv~nAG~ 98 (272)
T PRK08159 85 KWGKLDFVVHAIGF 98 (272)
T ss_pred hcCCCcEEEECCcc
Confidence 12568999987644
No 476
>PRK07454 short chain dehydrogenase; Provisional
Probab=79.33 E-value=14 Score=30.11 Aligned_cols=73 Identities=16% Similarity=0.130 Sum_probs=48.0
Q ss_pred CCeEEEEecCCCHHH----HHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703 100 SWSVLDIGTGNGLLL----QELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 164 (278)
Q Consensus 100 ~~~vLDiGcG~G~~~----~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~ 164 (278)
.+++|-.|+ +|.++ ..++++|. +|++++.++...+...+..+..+ .++.++.+|+.+... .+
T Consensus 6 ~k~vlItG~-sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (241)
T PRK07454 6 MPRALITGA-SSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRSTG-VKAAAYSIDLSNPEAIAPGIAELLEQFG 82 (241)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhCC-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 457888885 45444 44555676 89999999876665555444433 357888999987531 14
Q ss_pred CccEEEeCCcc
Q 023703 165 QFQLVMDKGTL 175 (278)
Q Consensus 165 ~fD~v~~~~~~ 175 (278)
+.|+++.+...
T Consensus 83 ~id~lv~~ag~ 93 (241)
T PRK07454 83 CPDVLINNAGM 93 (241)
T ss_pred CCCEEEECCCc
Confidence 57988876543
No 477
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=79.33 E-value=6.2 Score=33.58 Aligned_cols=46 Identities=22% Similarity=0.245 Sum_probs=36.7
Q ss_pred CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhh
Q 023703 98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR 144 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~ 144 (278)
..+.+|.-||+|.-.....++..+ ++|.++|+++..+..-+-++..
T Consensus 62 g~ghrivtigSGGcn~L~ylsr~P-a~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 62 GIGHRIVTIGSGGCNMLAYLSRAP-ARIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred CCCcEEEEecCCcchHHHHhhcCC-ceeEEEeCCHHHHHHHHHHHHH
Confidence 567899999999777777777775 5899999999988877665543
No 478
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=79.28 E-value=8.6 Score=32.19 Aligned_cols=90 Identities=17% Similarity=0.223 Sum_probs=49.5
Q ss_pred HHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccceeccCCCChhhHHHH
Q 023703 113 LLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMY 191 (278)
Q Consensus 113 ~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~ 191 (278)
++..|.+.| ..+|+|+|.++..++.|.+ .|+. .-...+. + .-..+|+|+..-+.. ....+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~----~g~~--~~~~~~~-~--~~~~~DlvvlavP~~----------~~~~~ 61 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALE----LGII--DEASTDI-E--AVEDADLVVLAVPVS----------AIEDV 61 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHH----TTSS--SEEESHH-H--HGGCCSEEEE-S-HH----------HHHHH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHH----CCCe--eeccCCH-h--HhcCCCEEEEcCCHH----------HHHHH
Confidence 356677776 3489999999999988865 2321 1112211 1 113368888755443 55677
Q ss_pred HHHHHhcccCCcEEEEEecCCChHHHHHHHhh
Q 023703 192 WDSVSKLVAPGGLLVITSCNSTKDELVHEVSN 223 (278)
Q Consensus 192 l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 223 (278)
++++...+++|+.+.=. ..........+..
T Consensus 62 l~~~~~~~~~~~iv~Dv--~SvK~~~~~~~~~ 91 (258)
T PF02153_consen 62 LEEIAPYLKPGAIVTDV--GSVKAPIVEAMER 91 (258)
T ss_dssp HHHHHCGS-TTSEEEE----S-CHHHHHHHHH
T ss_pred HHHhhhhcCCCcEEEEe--CCCCHHHHHHHHH
Confidence 78999989988644333 3333344444443
No 479
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=79.00 E-value=8.2 Score=31.00 Aligned_cols=33 Identities=30% Similarity=0.302 Sum_probs=25.7
Q ss_pred CCCeEEEEecCC-C-HHHHHHhhCCCCcEEEEeCC
Q 023703 99 SSWSVLDIGTGN-G-LLLQELSKQGFSDLTGVDYS 131 (278)
Q Consensus 99 ~~~~vLDiGcG~-G-~~~~~l~~~~~~~v~~~D~s 131 (278)
...+||=+|||. | ..+..|+..|..+++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 567999999984 3 35566777787789999987
No 480
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=78.93 E-value=6 Score=35.11 Aligned_cols=99 Identities=18% Similarity=0.253 Sum_probs=50.0
Q ss_pred CCCeEEEEecCC-CHHHHHHhh-CCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-cCCCccEEEeCCcc
Q 023703 99 SSWSVLDIGTGN-GLLLQELSK-QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-LERQFQLVMDKGTL 175 (278)
Q Consensus 99 ~~~~vLDiGcG~-G~~~~~l~~-~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~~ 175 (278)
++.+|+=+|+|. |..+...+. .|. +|+.+|.++...+.+...+ + ..+.....+...+. .-..+|+|+..-..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~---g-~~v~~~~~~~~~l~~~l~~aDvVI~a~~~ 240 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEF---G-GRIHTRYSNAYEIEDAVKRADLLIGAVLI 240 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhc---C-ceeEeccCCHHHHHHHHccCCEEEEcccc
Confidence 456799998873 333333333 375 7999999988766655433 1 11211111111110 11467998864211
Q ss_pred ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
.. ...+ . -+-++..+.++||+.++-..
T Consensus 241 ~g----~~~p-~--lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 241 PG----AKAP-K--LVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CC----CCCC-c--CcCHHHHhcCCCCCEEEEEe
Confidence 00 0000 0 01145556688988776654
No 481
>PRK08643 acetoin reductase; Validated
Probab=78.78 E-value=13 Score=30.58 Aligned_cols=73 Identities=26% Similarity=0.389 Sum_probs=48.6
Q ss_pred CCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CCC
Q 023703 100 SWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQ 165 (278)
Q Consensus 100 ~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~~ 165 (278)
++++|-.|+.+| .++..++++|+ +|+.++.++...+.....+...+ .++.++.+|+.+... .++
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDYNEETAQAAADKLSKDG-GKAIAVKADVSDRDQVFAAVRQVVDTFGD 79 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 346787776555 33445555675 89999998877776666555443 357788999987521 246
Q ss_pred ccEEEeCCc
Q 023703 166 FQLVMDKGT 174 (278)
Q Consensus 166 fD~v~~~~~ 174 (278)
.|+++.+..
T Consensus 80 id~vi~~ag 88 (256)
T PRK08643 80 LNVVVNNAG 88 (256)
T ss_pred CCEEEECCC
Confidence 898887653
No 482
>PRK07024 short chain dehydrogenase; Provisional
Probab=78.59 E-value=10 Score=31.30 Aligned_cols=72 Identities=21% Similarity=0.260 Sum_probs=47.4
Q ss_pred CeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CCCc
Q 023703 101 WSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQF 166 (278)
Q Consensus 101 ~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~~f 166 (278)
++||-.|+.+| .++..+++.|+ +|+.++.++..++...+.+...+ ++.++.+|+.+... .+..
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~i~~~~~~~~~~~g~i 79 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGA-TLGLVARRTDALQAFAARLPKAA--RVSVYAADVRDADALAAAAADFIAAHGLP 79 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcccCC--eeEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 47787887554 34445566676 89999998877765554443222 67888999987421 1457
Q ss_pred cEEEeCCcc
Q 023703 167 QLVMDKGTL 175 (278)
Q Consensus 167 D~v~~~~~~ 175 (278)
|+++.+...
T Consensus 80 d~lv~~ag~ 88 (257)
T PRK07024 80 DVVIANAGI 88 (257)
T ss_pred CEEEECCCc
Confidence 999877543
No 483
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=78.50 E-value=7.8 Score=31.69 Aligned_cols=93 Identities=14% Similarity=0.182 Sum_probs=55.0
Q ss_pred HHHHHhhCCCCcEEEEeCChHHHHHHHHHhh-hCCCcceEEEEccccCCc-----------cC-CCccEEEeCCcccee-
Q 023703 113 LLQELSKQGFSDLTGVDYSEDAINLAQSLAN-RDGFSCIKFLVDDVLDTK-----------LE-RQFQLVMDKGTLDAI- 178 (278)
Q Consensus 113 ~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~-~~~~~~~~~~~~d~~~~~-----------~~-~~fD~v~~~~~~~~~- 178 (278)
.+..+++.|+ +|+.++.++..++..-+.+. ..+ ..++.+|+.+.. .. ++.|+++.+......
T Consensus 12 ia~~l~~~Ga-~V~~~~~~~~~~~~~~~~l~~~~~---~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~~a~~~~~~ 87 (241)
T PF13561_consen 12 IARALAEEGA-NVILTDRNEEKLADALEELAKEYG---AEVIQCDLSDEESVEALFDEAVERFGGRIDILVNNAGISPPS 87 (241)
T ss_dssp HHHHHHHTTE-EEEEEESSHHHHHHHHHHHHHHTT---SEEEESCTTSHHHHHHHHHHHHHHHCSSESEEEEEEESCTGG
T ss_pred HHHHHHHCCC-EEEEEeCChHHHHHHHHHHHHHcC---CceEeecCcchHHHHHHHHHHHhhcCCCeEEEEecccccccc
Confidence 4556666785 89999999987544433333 333 346999997642 13 788988865432211
Q ss_pred ----ccCCCChh-----------hHHHHHHHHHhcccCCcEEEEEe
Q 023703 179 ----GLHPDGPL-----------KRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 179 ----~~~~~~~~-----------~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
.+.....+ ....+.+.+.+.++++|.+++.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~is 133 (241)
T PF13561_consen 88 NVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINIS 133 (241)
T ss_dssp GTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred cCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccc
Confidence 00000111 11345567777888899888764
No 484
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=78.43 E-value=6.1 Score=29.99 Aligned_cols=41 Identities=10% Similarity=0.012 Sum_probs=26.4
Q ss_pred EEecCCC--HHHHHHh--hC-CCCcEEEEeCChHHHHHHHHH--hhhC
Q 023703 105 DIGTGNG--LLLQELS--KQ-GFSDLTGVDYSEDAINLAQSL--ANRD 145 (278)
Q Consensus 105 DiGcG~G--~~~~~l~--~~-~~~~v~~~D~s~~~i~~a~~~--~~~~ 145 (278)
|+|++.| .....+. .. ...+|+++|++|..++..+++ +..+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~ 48 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN 48 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence 8999999 5555543 23 234899999999999999998 5444
No 485
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=78.28 E-value=13 Score=30.51 Aligned_cols=74 Identities=14% Similarity=0.134 Sum_probs=49.6
Q ss_pred CCCeEEEEecCCCHHHHH----HhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------C
Q 023703 99 SSWSVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 163 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~~----l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~ 163 (278)
.+++||-.|+ +|.++.. +++.|+ +|+.++.++..++...+.+...+ .++.++.+|+.+... -
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQG-LSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC-ceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 4678998885 4544444 445576 79999999887766666555444 257788899987421 1
Q ss_pred CCccEEEeCCcc
Q 023703 164 RQFQLVMDKGTL 175 (278)
Q Consensus 164 ~~fD~v~~~~~~ 175 (278)
++.|+++.+...
T Consensus 86 ~~~d~li~~ag~ 97 (255)
T PRK07523 86 GPIDILVNNAGM 97 (255)
T ss_pred CCCCEEEECCCC
Confidence 457888876543
No 486
>PRK06194 hypothetical protein; Provisional
Probab=78.22 E-value=13 Score=31.23 Aligned_cols=75 Identities=17% Similarity=0.191 Sum_probs=48.7
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 164 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~ 164 (278)
++++||=.|++.| .++..++++|+ +|+.+|.++..++...+.+...+ .++.++.+|+.+... .+
T Consensus 5 ~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~~~~~~~g 82 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQG-AEVLGVRTDVSDAAQVEALADAALERFG 82 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 3567887776544 23444555676 79999998877666555444333 257788999987421 13
Q ss_pred CccEEEeCCcc
Q 023703 165 QFQLVMDKGTL 175 (278)
Q Consensus 165 ~fD~v~~~~~~ 175 (278)
+.|+++.+...
T Consensus 83 ~id~vi~~Ag~ 93 (287)
T PRK06194 83 AVHLLFNNAGV 93 (287)
T ss_pred CCCEEEECCCC
Confidence 67999887654
No 487
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=78.19 E-value=16 Score=29.82 Aligned_cols=73 Identities=16% Similarity=0.170 Sum_probs=47.2
Q ss_pred CCCeEEEEecCCCHHHH----HHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------C
Q 023703 99 SSWSVLDIGTGNGLLLQ----ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 163 (278)
Q Consensus 99 ~~~~vLDiGcG~G~~~~----~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~ 163 (278)
.+++||-.|++ |.++. .++++|+ +|++++-++..+......+...+ .++.++.+|+.+... .
T Consensus 5 ~~~~ilItGas-g~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (251)
T PRK12826 5 EGRVALVTGAA-RGIGRAIAVRLAADGA-EVIVVDICGDDAAATAELVEAAG-GKARARQVDVRDRAALKAAVAAGVEDF 81 (251)
T ss_pred CCCEEEEcCCC-CcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 45688877764 44444 4555675 79999998766655555444433 358889999987421 1
Q ss_pred CCccEEEeCCc
Q 023703 164 RQFQLVMDKGT 174 (278)
Q Consensus 164 ~~fD~v~~~~~ 174 (278)
+++|.++.+..
T Consensus 82 ~~~d~vi~~ag 92 (251)
T PRK12826 82 GRLDILVANAG 92 (251)
T ss_pred CCCCEEEECCC
Confidence 36888887653
No 488
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=78.16 E-value=19 Score=31.54 Aligned_cols=95 Identities=23% Similarity=0.282 Sum_probs=53.3
Q ss_pred ccCCCCeEEEEecC-CCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccC-------CccCCCc
Q 023703 96 KYLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD-------TKLERQF 166 (278)
Q Consensus 96 ~~~~~~~vLDiGcG-~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~-------~~~~~~f 166 (278)
...++.+||-.|+| .|..+..+++. |...+++++.++...+.+++ .+.. .++..+-.. ......+
T Consensus 184 ~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~----~g~~--~v~~~~~~~~~~~l~~~~~~~~~ 257 (367)
T cd08263 184 DVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKE----LGAT--HTVNAAKEDAVAAIREITGGRGV 257 (367)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc--eEecCCcccHHHHHHHHhCCCCC
Confidence 33567788866543 23344444544 65449999988887776644 2221 122211111 1123458
Q ss_pred cEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 167 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 167 D~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
|+|+.. +. .. ..+..+.++|+++|.++...
T Consensus 258 d~vld~-----vg-------~~-~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 258 DVVVEA-----LG-------KP-ETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred CEEEEe-----CC-------CH-HHHHHHHHHHhcCCEEEEEc
Confidence 888853 11 10 12367888999999988764
No 489
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=78.12 E-value=14 Score=30.40 Aligned_cols=75 Identities=16% Similarity=0.223 Sum_probs=49.2
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 164 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~ 164 (278)
+++++|-.|+..| .++..|+++|+ +|+.++.++...+.+.+.+...+ .++.++.+|+.+... .+
T Consensus 6 ~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALELARAGA-AVAIADLNQDGANAVADEINKAG-GKAIGVAMDVTNEDAVNAGIDKVAERFG 83 (262)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhcC-ceEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4567886666443 33444555676 79999999877766666655444 357788999987431 14
Q ss_pred CccEEEeCCcc
Q 023703 165 QFQLVMDKGTL 175 (278)
Q Consensus 165 ~fD~v~~~~~~ 175 (278)
+.|+++.+...
T Consensus 84 ~~d~vi~~ag~ 94 (262)
T PRK13394 84 SVDILVSNAGI 94 (262)
T ss_pred CCCEEEECCcc
Confidence 57888876543
No 490
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.62 E-value=39 Score=27.91 Aligned_cols=106 Identities=11% Similarity=0.004 Sum_probs=59.7
Q ss_pred CCCeEEEEecC-CCHHHH----HHhhCCCCcEEEEeCCh--HHHHHHHHHhhhCCCcceEEEEccccCCc----------
Q 023703 99 SSWSVLDIGTG-NGLLLQ----ELSKQGFSDLTGVDYSE--DAINLAQSLANRDGFSCIKFLVDDVLDTK---------- 161 (278)
Q Consensus 99 ~~~~vLDiGcG-~G~~~~----~l~~~~~~~v~~~D~s~--~~i~~a~~~~~~~~~~~~~~~~~d~~~~~---------- 161 (278)
.++++|-.|+| ++.++. .+++.|+ +|+.++.+. ..++...+.. + .++.++.+|+.+..
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~---~-~~~~~~~~Dv~~~~~i~~~~~~~~ 80 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGA-EVVLTGFGRALRLTERIAKRL---P-EPAPVLELDVTNEEHLASLADRVR 80 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCC-EEEEecCccchhHHHHHHHhc---C-CCCcEEeCCCCCHHHHHHHHHHHH
Confidence 46789999984 444444 4555675 788888664 3344333322 2 24667888987752
Q ss_pred -cCCCccEEEeCCcccee-----ccCCCChhhH-----------HHHHHHHHhcccCCcEEEEEe
Q 023703 162 -LERQFQLVMDKGTLDAI-----GLHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 162 -~~~~fD~v~~~~~~~~~-----~~~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~ 209 (278)
..++.|+++.+..+... .+...+.++. ..+.+.+...|+++|.++..+
T Consensus 81 ~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is 145 (256)
T PRK07889 81 EHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLD 145 (256)
T ss_pred HHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEe
Confidence 12678999887654210 0111111111 234456677777888776644
No 491
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=77.47 E-value=15 Score=30.29 Aligned_cols=75 Identities=13% Similarity=0.113 Sum_probs=50.1
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 164 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~ 164 (278)
.+++||-.|+++| .++..++++|. +++.++.++..++.+.......+ .++.++..|+.+... -+
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 87 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLG-GQAFACRCDITSEQELSALADFALSKLG 87 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4678999997666 34445666675 78889988877766555444433 257788899886521 14
Q ss_pred CccEEEeCCcc
Q 023703 165 QFQLVMDKGTL 175 (278)
Q Consensus 165 ~fD~v~~~~~~ 175 (278)
++|.++.+...
T Consensus 88 ~~d~li~~ag~ 98 (255)
T PRK06113 88 KVDILVNNAGG 98 (255)
T ss_pred CCCEEEECCCC
Confidence 67988876543
No 492
>PRK08177 short chain dehydrogenase; Provisional
Probab=77.31 E-value=29 Score=27.85 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=42.0
Q ss_pred eEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc---------cCCCccEE
Q 023703 102 SVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---------LERQFQLV 169 (278)
Q Consensus 102 ~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~---------~~~~fD~v 169 (278)
+||=.|+..| .++..+++.|+ +|++++.++...+.++. . .++.+..+|+.+.. ..+++|++
T Consensus 3 ~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~----~--~~~~~~~~D~~d~~~~~~~~~~~~~~~id~v 75 (225)
T PRK08177 3 TALIIGASRGLGLGLVDRLLERGW-QVTATVRGPQQDTALQA----L--PGVHIEKLDMNDPASLDQLLQRLQGQRFDLL 75 (225)
T ss_pred EEEEeCCCchHHHHHHHHHHhCCC-EEEEEeCCCcchHHHHh----c--cccceEEcCCCCHHHHHHHHHHhhcCCCCEE
Confidence 5777776544 24555666676 89999988765544332 1 24667778887642 12468998
Q ss_pred EeCCc
Q 023703 170 MDKGT 174 (278)
Q Consensus 170 ~~~~~ 174 (278)
+.+..
T Consensus 76 i~~ag 80 (225)
T PRK08177 76 FVNAG 80 (225)
T ss_pred EEcCc
Confidence 87653
No 493
>PRK06484 short chain dehydrogenase; Validated
Probab=77.27 E-value=33 Score=31.73 Aligned_cols=72 Identities=18% Similarity=0.184 Sum_probs=49.0
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 164 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~ 164 (278)
+++++|-.|++.| .++..++++|+ +|+.++.++..++.+.+.. + .++.++..|+.+... .+
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g 78 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGD-QVVVADRNVERARERADSL---G-PDHHALAMDVSDEAQIREGFEQLHREFG 78 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---C-CceeEEEeccCCHHHHHHHHHHHHHHhC
Confidence 4668888888776 45556666776 8999998887766554432 2 246778888876421 25
Q ss_pred CccEEEeCCcc
Q 023703 165 QFQLVMDKGTL 175 (278)
Q Consensus 165 ~fD~v~~~~~~ 175 (278)
+.|+++.+..+
T Consensus 79 ~iD~li~nag~ 89 (520)
T PRK06484 79 RIDVLVNNAGV 89 (520)
T ss_pred CCCEEEECCCc
Confidence 78998877543
No 494
>PRK09242 tropinone reductase; Provisional
Probab=77.04 E-value=15 Score=30.23 Aligned_cols=75 Identities=19% Similarity=0.194 Sum_probs=50.8
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC--CCcceEEEEccccCCcc-----------
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD--GFSCIKFLVDDVLDTKL----------- 162 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~--~~~~~~~~~~d~~~~~~----------- 162 (278)
.++++|-.|++.| .++..+++.|+ +|+.++.++..++.....+... + .++.++.+|+.+...
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPE-REVHGLAADVSDDEDRRAILDWVEDH 85 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCC-CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4678899988655 34455566676 7999999887777666555433 2 257888999876421
Q ss_pred CCCccEEEeCCcc
Q 023703 163 ERQFQLVMDKGTL 175 (278)
Q Consensus 163 ~~~fD~v~~~~~~ 175 (278)
-++.|+++.+...
T Consensus 86 ~g~id~li~~ag~ 98 (257)
T PRK09242 86 WDGLHILVNNAGG 98 (257)
T ss_pred cCCCCEEEECCCC
Confidence 2568988876543
No 495
>PRK07062 short chain dehydrogenase; Provisional
Probab=76.94 E-value=15 Score=30.35 Aligned_cols=76 Identities=13% Similarity=0.074 Sum_probs=51.1
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCC-CcceEEEEccccCCcc-----------C
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVDDVLDTKL-----------E 163 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~-~~~~~~~~~d~~~~~~-----------~ 163 (278)
.++++|-.|++.| .++..+++.|+ +|+.++.++..++.+.+.+.... -.++.++.+|+.+... .
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF 85 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 4678999998766 34555666676 79999999877776655544321 1257778889877521 2
Q ss_pred CCccEEEeCCcc
Q 023703 164 RQFQLVMDKGTL 175 (278)
Q Consensus 164 ~~fD~v~~~~~~ 175 (278)
++.|+++.+...
T Consensus 86 g~id~li~~Ag~ 97 (265)
T PRK07062 86 GGVDMLVNNAGQ 97 (265)
T ss_pred CCCCEEEECCCC
Confidence 568988876543
No 496
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.88 E-value=15 Score=29.91 Aligned_cols=74 Identities=14% Similarity=0.145 Sum_probs=49.4
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 164 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~ 164 (278)
++++||=.|+..| .++..++++|+ +|++++.++...+.+...+.. + .++.++.+|+.+... .+
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGA-RVVVTDRNEEAAERVAAEILA-G-GRAIAVAADVSDEADVEAAVAAALERFG 80 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhc-C-CeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 4568888887554 24445666676 699999998776665554433 2 257889999887531 13
Q ss_pred CccEEEeCCcc
Q 023703 165 QFQLVMDKGTL 175 (278)
Q Consensus 165 ~fD~v~~~~~~ 175 (278)
++|+|+.+...
T Consensus 81 ~~d~vi~~ag~ 91 (251)
T PRK07231 81 SVDILVNNAGT 91 (251)
T ss_pred CCCEEEECCCC
Confidence 68998876543
No 497
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=76.70 E-value=16 Score=29.76 Aligned_cols=74 Identities=12% Similarity=0.214 Sum_probs=48.0
Q ss_pred CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703 99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 164 (278)
Q Consensus 99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~ 164 (278)
+++++|-.|++.| .++..+++.|+ +|+.++.++...+.+.......+ .++.++.+|+.+... .+
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 79 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDLNREAAEKVAADIRAKG-GNAQAFACDITDRDSVDTAVAAAEQALG 79 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 3567888886543 23344555565 79999998877766665554433 358888999876421 13
Q ss_pred CccEEEeCCc
Q 023703 165 QFQLVMDKGT 174 (278)
Q Consensus 165 ~fD~v~~~~~ 174 (278)
+.|+++.+..
T Consensus 80 ~~d~vi~~ag 89 (250)
T TIGR03206 80 PVDVLVNNAG 89 (250)
T ss_pred CCCEEEECCC
Confidence 5788876654
No 498
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=76.63 E-value=9.5 Score=33.53 Aligned_cols=72 Identities=22% Similarity=0.314 Sum_probs=45.9
Q ss_pred ccCCCCeEEEEecCCC--HHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCcc---CCCccE
Q 023703 96 KYLSSWSVLDIGTGNG--LLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKL---ERQFQL 168 (278)
Q Consensus 96 ~~~~~~~vLDiGcG~G--~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~---~~~fD~ 168 (278)
+..++..||=+|.++| .+++.+|.+ + ...+.+.-|.+.++.+++. |.+. +++...|..+... ...||+
T Consensus 154 ~~~~g~~vLv~ggsggVG~~aiQlAk~~~-~~~v~t~~s~e~~~l~k~l----GAd~vvdy~~~~~~e~~kk~~~~~~Dv 228 (347)
T KOG1198|consen 154 KLSKGKSVLVLGGSGGVGTAAIQLAKHAG-AIKVVTACSKEKLELVKKL----GADEVVDYKDENVVELIKKYTGKGVDV 228 (347)
T ss_pred ccCCCCeEEEEeCCcHHHHHHHHHHHhcC-CcEEEEEcccchHHHHHHc----CCcEeecCCCHHHHHHHHhhcCCCccE
Confidence 4467789999888766 667777777 5 3577777788888888764 3222 3333333332211 457999
Q ss_pred EEeC
Q 023703 169 VMDK 172 (278)
Q Consensus 169 v~~~ 172 (278)
|+..
T Consensus 229 VlD~ 232 (347)
T KOG1198|consen 229 VLDC 232 (347)
T ss_pred EEEC
Confidence 9864
No 499
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=76.63 E-value=10 Score=29.99 Aligned_cols=103 Identities=20% Similarity=0.237 Sum_probs=50.9
Q ss_pred eEEEEecCCCH--HHHHHhhCCCCcEEEEeCChHHHHHHHHHhhh---CCC----------cceEEEEccccCCccCCCc
Q 023703 102 SVLDIGTGNGL--LLQELSKQGFSDLTGVDYSEDAINLAQSLANR---DGF----------SCIKFLVDDVLDTKLERQF 166 (278)
Q Consensus 102 ~vLDiGcG~G~--~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~---~~~----------~~~~~~~~d~~~~~~~~~f 166 (278)
+|--+|.|-=. .+..+++.|+ +|+|+|+++.-++..++.... .++ .++.+ ..|.... -...
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~-t~~~~~a--i~~a 77 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRA-TTDIEEA--IKDA 77 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE-ESEHHHH--HHH-
T ss_pred EEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchh-hhhhhhh--hhcc
Confidence 45666666543 3445666786 899999999988877542110 000 01111 1121110 1234
Q ss_pred cEEEe-CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703 167 QLVMD-KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209 (278)
Q Consensus 167 D~v~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 209 (278)
|+++. -++- .-.-..++.......++.+.+.|+++-.+++.+
T Consensus 78 dv~~I~VpTP-~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~S 120 (185)
T PF03721_consen 78 DVVFICVPTP-SDEDGSPDLSYVESAIESIAPVLRPGDLVVIES 120 (185)
T ss_dssp SEEEE----E-BETTTSBETHHHHHHHHHHHHHHCSCEEEEESS
T ss_pred ceEEEecCCC-ccccCCccHHHHHHHHHHHHHHHhhcceEEEcc
Confidence 55543 2211 111122233456777899999999988777764
No 500
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=76.59 E-value=15 Score=34.55 Aligned_cols=74 Identities=12% Similarity=0.011 Sum_probs=45.9
Q ss_pred CCCCeEEEEecCCCHHHHHH----hhCCCCcEEEEeCChHHHHHHHHHhhhC-----C---CcceEEEEccccCCcc---
Q 023703 98 LSSWSVLDIGTGNGLLLQEL----SKQGFSDLTGVDYSEDAINLAQSLANRD-----G---FSCIKFLVDDVLDTKL--- 162 (278)
Q Consensus 98 ~~~~~vLDiGcG~G~~~~~l----~~~~~~~v~~~D~s~~~i~~a~~~~~~~-----~---~~~~~~~~~d~~~~~~--- 162 (278)
+.+++||-.|+ +|.++..+ ++.|+ +|++++.++..++.....+... + ..++.++.+|+.+...
T Consensus 78 ~~gKvVLVTGA-TGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~ 155 (576)
T PLN03209 78 KDEDLAFVAGA-TGKVGSRTVRELLKLGF-RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGP 155 (576)
T ss_pred CCCCEEEEECC-CCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHH
Confidence 45667777765 45555544 44575 7999998887665444333221 1 1247889999987431
Q ss_pred -CCCccEEEeCC
Q 023703 163 -ERQFQLVMDKG 173 (278)
Q Consensus 163 -~~~fD~v~~~~ 173 (278)
-+..|+||++.
T Consensus 156 aLggiDiVVn~A 167 (576)
T PLN03209 156 ALGNASVVICCI 167 (576)
T ss_pred HhcCCCEEEEcc
Confidence 25688888764
Done!