Query 023704
Match_columns 278
No_of_seqs 144 out of 165
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 06:01:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023704.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023704hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0933 Structural maintenance 100.0 1.2E-26 2.5E-31 237.9 25.1 210 2-227 620-864 (1174)
2 TIGR02169 SMC_prok_A chromosom 99.5 5.4E-11 1.2E-15 126.7 28.6 33 2-35 618-659 (1164)
3 COG1196 Smc Chromosome segrega 99.4 2.3E-10 5E-15 124.1 26.8 55 2-56 611-681 (1163)
4 KOG0964 Structural maintenance 98.9 4.9E-07 1.1E-11 94.6 23.8 155 2-156 616-822 (1200)
5 KOG0996 Structural maintenance 98.9 4.1E-07 8.9E-12 96.6 23.1 34 3-36 714-759 (1293)
6 TIGR02168 SMC_prok_B chromosom 98.7 1.4E-05 2.9E-10 85.3 28.1 11 20-30 643-653 (1179)
7 KOG0018 Structural maintenance 98.4 8.2E-05 1.8E-09 79.1 23.3 36 2-37 599-646 (1141)
8 TIGR02168 SMC_prok_B chromosom 98.4 0.00014 3E-09 77.7 25.0 57 3-61 621-689 (1179)
9 PF07888 CALCOCO1: Calcium bin 98.3 0.00095 2.1E-08 67.4 26.7 171 47-231 141-323 (546)
10 PF09726 Macoilin: Transmembra 98.3 0.00087 1.9E-08 69.9 27.0 204 44-257 420-677 (697)
11 TIGR02169 SMC_prok_A chromosom 98.1 0.002 4.3E-08 69.3 26.9 101 126-226 392-496 (1164)
12 PRK11637 AmiB activator; Provi 98.0 0.016 3.5E-07 56.8 30.2 73 136-208 173-245 (428)
13 KOG0250 DNA repair protein RAD 97.8 0.007 1.5E-07 65.0 22.9 21 10-30 612-637 (1074)
14 PF00038 Filament: Intermediat 97.8 0.012 2.6E-07 54.9 22.4 103 71-173 48-151 (312)
15 PF08317 Spc7: Spc7 kinetochor 97.7 0.047 1E-06 52.0 25.1 110 119-228 156-266 (325)
16 PRK11637 AmiB activator; Provi 97.7 0.072 1.6E-06 52.3 27.1 54 170-223 193-250 (428)
17 PRK09039 hypothetical protein; 97.6 0.005 1.1E-07 59.2 18.0 81 142-222 111-199 (343)
18 PRK03918 chromosome segregatio 97.6 0.037 8.1E-07 58.5 25.8 97 108-204 601-699 (880)
19 PF08317 Spc7: Spc7 kinetochor 97.6 0.0092 2E-07 56.8 19.3 33 67-99 153-185 (325)
20 KOG0250 DNA repair protein RAD 97.5 0.037 8.1E-07 59.7 24.5 102 119-223 351-453 (1074)
21 PRK02224 chromosome segregatio 97.5 0.062 1.3E-06 57.0 25.9 24 72-95 208-231 (880)
22 PRK03918 chromosome segregatio 97.5 0.076 1.7E-06 56.1 26.2 64 113-176 225-288 (880)
23 PF05701 WEMBL: Weak chloropla 97.4 0.04 8.6E-07 55.8 22.3 116 70-188 235-361 (522)
24 TIGR00606 rad50 rad50. This fa 97.4 0.046 1E-06 60.9 23.9 106 121-226 890-1011(1311)
25 COG1579 Zn-ribbon protein, pos 97.3 0.033 7.1E-07 51.2 18.4 39 57-95 11-49 (239)
26 COG1196 Smc Chromosome segrega 97.3 0.13 2.7E-06 56.8 26.0 37 122-158 379-415 (1163)
27 COG1340 Uncharacterized archae 97.3 0.1 2.3E-06 49.2 21.7 125 81-206 111-242 (294)
28 KOG0977 Nuclear envelope prote 97.3 0.16 3.4E-06 51.8 24.2 58 164-221 169-230 (546)
29 PF14662 CCDC155: Coiled-coil 97.2 0.13 2.8E-06 45.8 20.6 106 121-226 69-185 (193)
30 PF00038 Filament: Intermediat 97.2 0.13 2.9E-06 47.9 21.9 118 46-177 8-137 (312)
31 KOG0971 Microtubule-associated 97.2 0.37 8E-06 51.6 26.3 183 44-226 233-430 (1243)
32 PRK02224 chromosome segregatio 97.2 0.14 3E-06 54.3 24.0 27 67-93 210-236 (880)
33 PF07888 CALCOCO1: Calcium bin 97.2 0.17 3.8E-06 51.5 23.1 158 61-232 281-464 (546)
34 PHA02562 46 endonuclease subun 97.1 0.22 4.7E-06 49.9 23.9 15 103-117 221-235 (562)
35 PF06818 Fez1: Fez1; InterPro 97.1 0.12 2.5E-06 46.4 19.0 57 166-222 133-200 (202)
36 TIGR00606 rad50 rad50. This fa 97.1 0.27 5.7E-06 55.0 25.7 57 175-233 1051-1107(1311)
37 PRK04778 septation ring format 97.1 0.1 2.3E-06 53.2 20.8 154 75-228 254-419 (569)
38 smart00787 Spc7 Spc7 kinetocho 97.1 0.099 2.1E-06 49.8 19.3 30 63-92 165-194 (312)
39 KOG0161 Myosin class II heavy 97.0 0.46 9.9E-06 54.8 26.5 23 203-225 1122-1144(1930)
40 PF10174 Cast: RIM-binding pro 97.0 0.44 9.6E-06 50.6 24.7 168 58-226 366-582 (775)
41 KOG0161 Myosin class II heavy 96.9 0.32 6.9E-06 56.0 24.1 104 127-230 1021-1128(1930)
42 PF07798 DUF1640: Protein of u 96.9 0.27 5.8E-06 42.8 19.1 61 122-182 94-156 (177)
43 KOG1029 Endocytic adaptor prot 96.8 0.095 2.1E-06 55.1 18.2 124 68-191 435-558 (1118)
44 COG1579 Zn-ribbon protein, pos 96.8 0.28 6.1E-06 45.1 19.5 81 105-189 69-149 (239)
45 KOG0977 Nuclear envelope prote 96.8 0.34 7.3E-06 49.4 21.4 111 77-191 134-262 (546)
46 COG4372 Uncharacterized protei 96.8 0.64 1.4E-05 45.6 24.7 156 59-221 112-281 (499)
47 KOG0933 Structural maintenance 96.7 0.38 8.2E-06 52.0 22.0 60 134-193 816-879 (1174)
48 PHA02562 46 endonuclease subun 96.7 0.38 8.2E-06 48.2 21.6 52 167-218 347-398 (562)
49 PF05701 WEMBL: Weak chloropla 96.7 0.56 1.2E-05 47.6 22.8 116 69-185 122-263 (522)
50 KOG0980 Actin-binding protein 96.7 0.83 1.8E-05 48.8 24.3 114 101-214 423-544 (980)
51 COG4942 Membrane-bound metallo 96.7 0.76 1.7E-05 45.5 28.2 45 176-223 204-248 (420)
52 KOG0996 Structural maintenance 96.7 0.62 1.3E-05 51.1 23.2 34 123-156 476-509 (1293)
53 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.7 0.3 6.5E-06 40.6 16.9 76 121-203 54-130 (132)
54 PF10473 CENP-F_leu_zip: Leuci 96.6 0.35 7.7E-06 41.0 19.1 36 64-99 18-53 (140)
55 PRK09039 hypothetical protein; 96.6 0.5 1.1E-05 45.5 20.6 40 121-160 125-164 (343)
56 PF12128 DUF3584: Protein of u 96.6 1.5 3.2E-05 48.8 26.8 125 69-193 255-381 (1201)
57 PF10473 CENP-F_leu_zip: Leuci 96.5 0.25 5.3E-06 42.0 15.7 54 47-100 29-82 (140)
58 PF00261 Tropomyosin: Tropomyo 96.5 0.61 1.3E-05 42.4 21.6 107 119-226 92-217 (237)
59 PRK04863 mukB cell division pr 96.5 1.2 2.6E-05 50.6 25.5 106 121-226 357-476 (1486)
60 KOG0964 Structural maintenance 96.5 1.1 2.3E-05 48.5 23.5 89 131-226 395-487 (1200)
61 KOG0995 Centromere-associated 96.5 0.51 1.1E-05 48.1 20.3 146 73-226 216-366 (581)
62 PF10168 Nup88: Nuclear pore c 96.5 0.6 1.3E-05 49.2 21.8 62 166-227 648-713 (717)
63 TIGR01843 type_I_hlyD type I s 96.5 0.35 7.5E-06 46.3 18.7 27 200-226 247-273 (423)
64 PF13514 AAA_27: AAA domain 96.4 1.6 3.5E-05 48.0 25.6 132 57-188 161-327 (1111)
65 PF06160 EzrA: Septation ring 96.4 0.48 1E-05 48.4 20.1 158 74-232 249-415 (560)
66 PF12128 DUF3584: Protein of u 96.4 1.5 3.2E-05 48.8 25.2 65 165-229 726-794 (1201)
67 PF04849 HAP1_N: HAP1 N-termin 96.4 0.93 2E-05 43.1 21.8 163 57-226 83-268 (306)
68 KOG4674 Uncharacterized conser 96.4 1.9 4E-05 49.6 25.5 87 142-228 800-887 (1822)
69 KOG1853 LIS1-interacting prote 96.3 0.9 2E-05 42.3 20.8 15 212-226 170-184 (333)
70 KOG4809 Rab6 GTPase-interactin 96.3 0.78 1.7E-05 46.7 20.3 154 57-210 332-509 (654)
71 PF05483 SCP-1: Synaptonemal c 96.3 1.7 3.7E-05 45.4 23.6 165 51-224 522-686 (786)
72 smart00787 Spc7 Spc7 kinetocho 96.3 1.1 2.3E-05 42.9 20.6 107 121-227 153-260 (312)
73 PF12325 TMF_TATA_bd: TATA ele 96.3 0.086 1.9E-06 43.6 11.3 72 113-187 20-91 (120)
74 KOG2129 Uncharacterized conser 96.3 1.4 3E-05 43.7 23.2 126 97-222 153-305 (552)
75 PF10174 Cast: RIM-binding pro 96.2 2.1 4.6E-05 45.6 25.7 180 44-223 289-489 (775)
76 PF00261 Tropomyosin: Tropomyo 96.2 0.91 2E-05 41.2 19.9 104 120-223 121-228 (237)
77 PF09726 Macoilin: Transmembra 96.2 0.4 8.7E-06 50.4 18.5 12 214-225 588-599 (697)
78 KOG4674 Uncharacterized conser 96.2 0.63 1.4E-05 53.2 20.7 134 45-188 734-868 (1822)
79 TIGR01000 bacteriocin_acc bact 96.2 1.5 3.3E-05 43.3 22.3 25 165-189 237-261 (457)
80 PF12718 Tropomyosin_1: Tropom 96.1 0.7 1.5E-05 39.2 16.7 28 131-158 33-60 (143)
81 PF15619 Lebercilin: Ciliary p 96.1 0.85 1.8E-05 40.6 17.7 70 119-188 118-188 (194)
82 PF04156 IncA: IncA protein; 96.1 0.5 1.1E-05 41.0 16.0 33 67-99 78-110 (191)
83 PF04111 APG6: Autophagy prote 96.1 0.11 2.3E-06 49.5 12.5 92 125-219 42-133 (314)
84 PF06818 Fez1: Fez1; InterPro 96.0 0.29 6.3E-06 43.9 14.2 19 206-224 131-149 (202)
85 TIGR02680 conserved hypothetic 96.0 3.1 6.7E-05 47.0 25.4 18 44-61 744-761 (1353)
86 KOG0612 Rho-associated, coiled 96.0 2.1 4.5E-05 47.3 22.7 64 163-226 587-650 (1317)
87 PRK01156 chromosome segregatio 96.0 2.6 5.7E-05 45.1 23.8 77 113-189 623-699 (895)
88 KOG0995 Centromere-associated 96.0 0.9 2E-05 46.4 19.0 104 107-219 285-391 (581)
89 COG4372 Uncharacterized protei 96.0 1.8 3.9E-05 42.6 22.2 101 57-157 131-241 (499)
90 PF14662 CCDC155: Coiled-coil 95.9 1.2 2.6E-05 39.7 23.3 155 47-201 20-188 (193)
91 PLN03229 acetyl-coenzyme A car 95.8 1.3 2.9E-05 46.6 19.5 79 145-225 647-731 (762)
92 PRK04863 mukB cell division pr 95.7 5.1 0.00011 45.8 25.6 103 121-223 371-480 (1486)
93 PF12325 TMF_TATA_bd: TATA ele 95.7 0.55 1.2E-05 38.8 13.6 83 119-201 16-98 (120)
94 PF08614 ATG16: Autophagy prot 95.7 0.14 3.1E-06 45.1 10.9 46 167-218 147-192 (194)
95 KOG4603 TBP-1 interacting prot 95.7 0.44 9.5E-06 41.9 13.4 96 126-222 79-178 (201)
96 PF09730 BicD: Microtubule-ass 95.7 1 2.3E-05 47.4 18.6 106 119-224 69-181 (717)
97 PF05911 DUF869: Plant protein 95.7 3 6.5E-05 44.5 22.1 108 106-216 593-718 (769)
98 PF15070 GOLGA2L5: Putative go 95.7 3 6.6E-05 43.4 21.8 29 174-202 163-191 (617)
99 PF09789 DUF2353: Uncharacteri 95.6 0.94 2E-05 43.4 16.7 122 62-183 78-208 (319)
100 TIGR02680 conserved hypothetic 95.6 5.2 0.00011 45.2 25.0 96 65-160 225-324 (1353)
101 PF13851 GAS: Growth-arrest sp 95.6 0.82 1.8E-05 40.8 15.2 58 167-224 103-168 (201)
102 COG5185 HEC1 Protein involved 95.6 1.3 2.9E-05 44.4 17.8 149 72-231 251-407 (622)
103 PRK04778 septation ring format 95.5 3.4 7.3E-05 42.3 24.9 104 122-226 379-503 (569)
104 PF04111 APG6: Autophagy prote 95.5 0.23 5.1E-06 47.2 12.3 30 166-195 108-137 (314)
105 KOG4673 Transcription factor T 95.5 3.5 7.6E-05 43.3 21.0 48 174-227 554-601 (961)
106 PF12718 Tropomyosin_1: Tropom 95.5 1.4 3E-05 37.4 17.5 17 144-160 77-93 (143)
107 TIGR03185 DNA_S_dndD DNA sulfu 95.4 1.3 2.9E-05 45.8 18.3 83 68-162 389-471 (650)
108 PF08614 ATG16: Autophagy prot 95.4 0.13 2.9E-06 45.3 9.6 56 44-99 69-124 (194)
109 TIGR03017 EpsF chain length de 95.4 3 6.6E-05 40.7 20.0 40 143-182 257-300 (444)
110 TIGR01843 type_I_hlyD type I s 95.3 2.8 6E-05 40.0 20.7 28 201-228 241-268 (423)
111 KOG0963 Transcription factor/C 95.3 1.7 3.6E-05 44.9 18.0 36 138-173 290-326 (629)
112 PF15035 Rootletin: Ciliary ro 95.2 2 4.3E-05 37.9 19.0 156 63-225 9-178 (182)
113 PF15619 Lebercilin: Ciliary p 95.2 2.1 4.6E-05 38.1 21.4 25 44-68 14-38 (194)
114 PF09787 Golgin_A5: Golgin sub 95.2 3.9 8.4E-05 41.4 20.5 14 212-225 368-381 (511)
115 PF09755 DUF2046: Uncharacteri 95.2 3 6.6E-05 39.8 26.7 24 208-231 231-254 (310)
116 PF08647 BRE1: BRE1 E3 ubiquit 95.2 0.49 1.1E-05 37.3 11.2 88 123-217 7-94 (96)
117 KOG0612 Rho-associated, coiled 95.2 1 2.2E-05 49.6 16.9 64 137-200 620-685 (1317)
118 KOG0982 Centrosomal protein Nu 95.1 3.9 8.4E-05 40.7 20.2 51 45-95 218-268 (502)
119 KOG4643 Uncharacterized coiled 95.1 6.3 0.00014 43.0 24.5 24 203-226 582-605 (1195)
120 KOG4643 Uncharacterized coiled 95.1 1.9 4.2E-05 46.8 18.4 110 44-153 172-291 (1195)
121 COG0419 SbcC ATPase involved i 95.1 6.1 0.00013 42.6 24.8 76 147-226 274-349 (908)
122 TIGR03007 pepcterm_ChnLen poly 95.1 1.8 3.9E-05 43.0 17.6 55 44-98 170-232 (498)
123 PF08826 DMPK_coil: DMPK coile 95.1 0.34 7.4E-06 35.5 9.2 36 114-149 6-41 (61)
124 COG2433 Uncharacterized conser 95.1 0.42 9.1E-06 49.1 12.9 84 121-205 431-514 (652)
125 PF10498 IFT57: Intra-flagella 95.0 2.8 6.1E-05 40.8 18.0 66 121-186 282-350 (359)
126 COG5185 HEC1 Protein involved 95.0 2.3 5E-05 42.8 17.4 71 118-188 329-399 (622)
127 PF15294 Leu_zip: Leucine zipp 94.9 3.4 7.5E-05 38.9 20.3 118 101-228 85-244 (278)
128 PF10146 zf-C4H2: Zinc finger- 94.8 1.9 4.1E-05 39.5 15.6 56 121-179 48-103 (230)
129 PF09755 DUF2046: Uncharacteri 94.8 3.8 8.3E-05 39.1 19.4 54 137-190 226-280 (310)
130 PF13851 GAS: Growth-arrest sp 94.8 2.8 6.1E-05 37.4 18.9 96 122-217 44-139 (201)
131 PF11932 DUF3450: Protein of u 94.8 1.5 3.3E-05 40.0 14.9 92 132-226 41-144 (251)
132 KOG0999 Microtubule-associated 94.7 4.2 9.2E-05 41.8 18.7 29 68-96 48-76 (772)
133 PF05667 DUF812: Protein of un 94.7 6.3 0.00014 40.9 21.1 22 202-223 487-508 (594)
134 TIGR01000 bacteriocin_acc bact 94.6 5.1 0.00011 39.7 21.5 23 163-185 242-264 (457)
135 PF11559 ADIP: Afadin- and alp 94.6 2.4 5.2E-05 35.6 18.6 29 63-91 52-80 (151)
136 KOG0979 Structural maintenance 94.6 8.7 0.00019 42.0 21.9 105 115-226 251-359 (1072)
137 TIGR01005 eps_transp_fam exopo 94.5 4.2 9E-05 42.8 19.3 27 65-91 196-222 (754)
138 PF04156 IncA: IncA protein; 94.4 2.1 4.5E-05 37.1 14.3 22 163-184 129-150 (191)
139 PF15070 GOLGA2L5: Putative go 94.4 7.4 0.00016 40.5 22.4 95 45-150 90-191 (617)
140 KOG0962 DNA repair protein RAD 94.4 11 0.00024 42.3 22.6 160 44-222 167-334 (1294)
141 KOG1029 Endocytic adaptor prot 94.3 7.4 0.00016 41.6 20.0 42 167-208 482-523 (1118)
142 PF06785 UPF0242: Uncharacteri 94.3 3.1 6.6E-05 40.2 16.0 35 124-158 139-173 (401)
143 PRK09841 cryptic autophosphory 94.3 1.6 3.6E-05 45.8 15.7 36 65-100 262-297 (726)
144 KOG0978 E3 ubiquitin ligase in 94.2 8.6 0.00019 40.6 21.4 167 46-226 465-641 (698)
145 PF05622 HOOK: HOOK protein; 94.2 0.013 2.8E-07 61.3 0.0 115 103-224 302-416 (713)
146 COG4477 EzrA Negative regulato 94.2 6.4 0.00014 40.2 18.7 114 114-227 297-410 (570)
147 COG1340 Uncharacterized archae 94.2 5.3 0.00011 37.9 25.3 74 142-222 133-209 (294)
148 PF13514 AAA_27: AAA domain 94.2 11 0.00024 41.6 24.4 45 147-191 784-828 (1111)
149 PF09730 BicD: Microtubule-ass 94.1 9.2 0.0002 40.5 23.7 29 68-96 284-312 (717)
150 TIGR03007 pepcterm_ChnLen poly 94.1 6.7 0.00015 38.9 20.1 101 124-228 252-377 (498)
151 KOG0018 Structural maintenance 94.0 10 0.00022 41.7 20.8 146 68-222 199-347 (1141)
152 PF10168 Nup88: Nuclear pore c 94.0 3.6 7.8E-05 43.5 17.5 13 3-15 451-464 (717)
153 COG0419 SbcC ATPase involved i 93.9 11 0.00024 40.6 26.1 161 68-229 272-440 (908)
154 PF07111 HCR: Alpha helical co 93.9 9.4 0.0002 40.2 19.6 51 140-190 162-216 (739)
155 KOG4593 Mitotic checkpoint pro 93.8 10 0.00022 39.9 26.1 60 163-222 250-315 (716)
156 KOG4807 F-actin binding protei 93.8 6.2 0.00013 39.1 17.2 108 109-222 439-574 (593)
157 PF09787 Golgin_A5: Golgin sub 93.7 8.7 0.00019 38.9 22.2 109 80-188 158-298 (511)
158 KOG2129 Uncharacterized conser 93.7 8.2 0.00018 38.5 19.0 137 68-220 163-323 (552)
159 PRK10884 SH3 domain-containing 93.7 1.7 3.6E-05 39.1 12.5 26 128-153 141-166 (206)
160 PF05557 MAD: Mitotic checkpoi 93.7 0.019 4.1E-07 60.1 0.0 25 196-220 254-278 (722)
161 PRK10884 SH3 domain-containing 93.7 0.93 2E-05 40.8 10.8 26 73-98 89-114 (206)
162 TIGR00634 recN DNA repair prot 93.6 3.7 8E-05 41.9 16.4 59 163-225 321-379 (563)
163 PRK06569 F0F1 ATP synthase sub 93.6 2.9 6.2E-05 36.1 13.3 91 113-209 45-138 (155)
164 PF05911 DUF869: Plant protein 93.4 13 0.00028 39.8 22.6 58 51-108 4-76 (769)
165 PF11559 ADIP: Afadin- and alp 93.4 4.2 9.2E-05 34.1 16.9 29 61-89 43-71 (151)
166 PRK11519 tyrosine kinase; Prov 93.4 5.1 0.00011 42.2 17.3 33 68-100 265-297 (719)
167 TIGR02977 phageshock_pspA phag 93.4 5.7 0.00012 35.6 21.3 104 47-160 29-133 (219)
168 PF07798 DUF1640: Protein of u 93.3 5 0.00011 34.9 17.1 16 211-226 136-151 (177)
169 TIGR02971 heterocyst_DevB ABC 93.3 6.9 0.00015 36.5 17.4 14 211-224 191-204 (327)
170 PF10186 Atg14: UV radiation r 93.3 6.3 0.00014 35.9 17.5 28 123-150 74-101 (302)
171 PF10234 Cluap1: Clusterin-ass 93.2 2.2 4.9E-05 39.9 12.9 66 120-185 170-239 (267)
172 PF00769 ERM: Ezrin/radixin/mo 93.2 6.7 0.00015 36.0 18.5 110 46-162 9-118 (246)
173 KOG0963 Transcription factor/C 93.2 12 0.00026 38.8 24.3 95 127-224 236-342 (629)
174 PF01576 Myosin_tail_1: Myosin 93.1 0.026 5.6E-07 60.4 0.0 107 125-231 524-634 (859)
175 PF06008 Laminin_I: Laminin Do 93.1 7 0.00015 35.9 20.6 140 44-204 19-168 (264)
176 PF05557 MAD: Mitotic checkpoi 93.1 0.027 5.8E-07 59.0 0.0 101 122-222 195-321 (722)
177 PRK03947 prefoldin subunit alp 93.1 1.8 3.9E-05 35.9 11.0 46 182-227 91-136 (140)
178 PF10234 Cluap1: Clusterin-ass 93.0 5.7 0.00012 37.2 15.2 97 68-178 160-260 (267)
179 PF04626 DEC-1_C: Dec-1 protei 93.0 0.062 1.3E-06 44.2 2.0 29 241-271 74-102 (132)
180 PRK10361 DNA recombination pro 93.0 11 0.00025 38.0 22.9 99 132-233 98-208 (475)
181 PRK10361 DNA recombination pro 93.0 11 0.00024 38.0 18.2 85 110-194 44-129 (475)
182 PF07246 Phlebovirus_NSM: Phle 92.9 3.4 7.4E-05 38.6 13.4 80 10-99 94-190 (264)
183 KOG1937 Uncharacterized conser 92.9 12 0.00025 37.7 20.7 41 118-158 388-428 (521)
184 PF10481 CENP-F_N: Cenp-F N-te 92.8 5.1 0.00011 37.8 14.4 71 121-191 55-129 (307)
185 COG4942 Membrane-bound metallo 92.8 11 0.00024 37.5 24.9 83 144-226 158-244 (420)
186 PF06160 EzrA: Septation ring 92.8 13 0.00028 38.2 25.8 82 145-226 250-333 (560)
187 KOG2991 Splicing regulator [RN 92.8 8.6 0.00019 36.1 24.3 106 122-227 180-299 (330)
188 PF07106 TBPIP: Tat binding pr 92.7 1.4 3.1E-05 37.8 10.2 63 121-185 74-137 (169)
189 PF06810 Phage_GP20: Phage min 92.7 0.88 1.9E-05 39.1 8.9 66 122-187 9-74 (155)
190 PF05667 DUF812: Protein of un 92.7 14 0.00031 38.3 20.0 79 141-219 420-511 (594)
191 PF11932 DUF3450: Protein of u 92.7 5.2 0.00011 36.5 14.4 50 124-173 54-103 (251)
192 TIGR01005 eps_transp_fam exopo 92.7 15 0.00033 38.6 22.6 35 66-100 190-224 (754)
193 PF07926 TPR_MLP1_2: TPR/MLP1/ 92.6 5.1 0.00011 33.1 18.3 63 117-179 57-120 (132)
194 KOG0980 Actin-binding protein 92.6 18 0.00038 39.2 23.5 27 46-72 337-363 (980)
195 KOG0994 Extracellular matrix g 92.6 21 0.00045 40.0 23.9 38 195-232 1706-1743(1758)
196 PLN03229 acetyl-coenzyme A car 92.5 9.2 0.0002 40.6 17.4 79 47-136 460-545 (762)
197 PF15450 DUF4631: Domain of un 92.5 14 0.00029 37.8 22.0 141 44-196 339-480 (531)
198 KOG0976 Rho/Rac1-interacting s 92.4 18 0.00038 39.1 19.1 64 44-107 94-157 (1265)
199 PF14197 Cep57_CLD_2: Centroso 92.4 2.1 4.5E-05 32.0 9.4 62 121-185 7-68 (69)
200 TIGR03319 YmdA_YtgF conserved 92.4 14 0.0003 37.6 21.0 13 205-217 162-174 (514)
201 PF10481 CENP-F_N: Cenp-F N-te 92.3 5.1 0.00011 37.7 13.8 93 127-222 19-118 (307)
202 KOG0999 Microtubule-associated 92.2 16 0.00034 37.8 20.5 27 65-91 52-78 (772)
203 KOG0249 LAR-interacting protei 92.1 7.6 0.00016 41.1 16.0 18 44-61 93-110 (916)
204 PF15294 Leu_zip: Leucine zipp 92.1 11 0.00024 35.6 16.5 81 141-223 191-277 (278)
205 PF08172 CASP_C: CASP C termin 92.0 6.3 0.00014 36.5 14.1 43 188-230 89-131 (248)
206 KOG1853 LIS1-interacting prote 92.0 11 0.00023 35.4 18.1 46 75-120 57-102 (333)
207 KOG2264 Exostosin EXT1L [Signa 92.0 0.94 2E-05 46.5 9.2 61 118-188 78-138 (907)
208 PF15290 Syntaphilin: Golgi-lo 91.9 9.2 0.0002 36.1 15.0 86 78-173 83-168 (305)
209 PF04912 Dynamitin: Dynamitin 91.9 11 0.00024 36.7 16.4 86 74-160 265-356 (388)
210 PF10211 Ax_dynein_light: Axon 91.8 8.8 0.00019 33.9 14.8 66 121-188 122-187 (189)
211 PF08172 CASP_C: CASP C termin 91.7 1.5 3.3E-05 40.5 9.7 41 164-204 93-133 (248)
212 PRK11546 zraP zinc resistance 91.4 1.4 3.1E-05 37.5 8.4 40 148-187 73-112 (143)
213 PRK12704 phosphodiesterase; Pr 91.3 19 0.0004 36.8 19.8 13 205-217 168-180 (520)
214 PF13094 CENP-Q: CENP-Q, a CEN 91.2 8.5 0.00018 32.7 13.9 36 63-98 20-55 (160)
215 KOG0994 Extracellular matrix g 91.1 30 0.00065 38.8 19.7 51 65-115 1452-1505(1758)
216 KOG0946 ER-Golgi vesicle-tethe 91.0 21 0.00045 38.4 17.9 29 189-217 827-855 (970)
217 COG4913 Uncharacterized protei 91.0 25 0.00054 37.6 22.6 28 198-225 775-802 (1104)
218 PF02403 Seryl_tRNA_N: Seryl-t 90.9 2.8 6.1E-05 33.1 9.4 66 114-186 24-89 (108)
219 PRK10869 recombination and rep 90.9 15 0.00032 37.6 16.8 67 154-224 306-373 (553)
220 TIGR03794 NHPM_micro_HlyD NHPM 90.8 17 0.00037 35.5 17.8 23 201-223 229-251 (421)
221 PF05622 HOOK: HOOK protein; 90.7 0.073 1.6E-06 55.7 0.0 125 59-186 280-420 (713)
222 KOG0288 WD40 repeat protein Ti 90.6 11 0.00025 37.3 14.8 48 105-155 44-91 (459)
223 KOG4807 F-actin binding protei 90.6 19 0.00042 35.7 20.1 26 201-226 514-539 (593)
224 PF06705 SF-assemblin: SF-asse 90.6 13 0.00028 33.8 18.0 131 82-224 3-139 (247)
225 PF07139 DUF1387: Protein of u 90.6 8.9 0.00019 36.5 13.7 97 57-175 154-254 (302)
226 KOG0979 Structural maintenance 90.5 31 0.00067 37.9 20.3 18 74-91 192-209 (1072)
227 PF03962 Mnd1: Mnd1 family; I 90.5 6.7 0.00015 34.6 12.3 50 137-186 107-157 (188)
228 PRK03598 putative efflux pump 90.5 7.9 0.00017 36.3 13.6 9 16-24 31-39 (331)
229 PF14362 DUF4407: Domain of un 90.5 15 0.00032 34.3 15.3 62 145-206 187-253 (301)
230 COG1842 PspA Phage shock prote 90.4 14 0.0003 33.8 16.7 111 119-231 31-145 (225)
231 COG1730 GIM5 Predicted prefold 90.4 7.1 0.00015 33.4 11.8 49 183-231 92-140 (145)
232 KOG2391 Vacuolar sorting prote 90.4 1.2 2.6E-05 42.9 7.8 48 166-213 248-295 (365)
233 KOG0971 Microtubule-associated 90.3 31 0.00068 37.7 21.5 35 65-99 377-411 (1243)
234 PRK00106 hypothetical protein; 90.3 24 0.00052 36.3 19.8 25 206-232 184-208 (535)
235 PF03962 Mnd1: Mnd1 family; I 90.3 6.1 0.00013 34.9 11.8 75 124-202 67-141 (188)
236 TIGR01010 BexC_CtrB_KpsE polys 90.3 17 0.00037 34.6 16.9 91 70-187 170-265 (362)
237 COG0497 RecN ATPase involved i 90.2 20 0.00044 37.0 16.9 58 163-224 317-374 (557)
238 KOG0239 Kinesin (KAR3 subfamil 90.1 20 0.00043 37.9 17.1 82 121-209 236-317 (670)
239 PRK10698 phage shock protein P 90.0 14 0.00031 33.3 23.0 88 64-151 46-145 (222)
240 PF14197 Cep57_CLD_2: Centroso 89.9 5.3 0.00011 29.8 9.5 41 67-107 2-42 (69)
241 PF10146 zf-C4H2: Zinc finger- 89.9 12 0.00027 34.2 13.8 60 127-186 33-103 (230)
242 PF14992 TMCO5: TMCO5 family 89.9 13 0.00027 35.2 14.0 25 196-221 158-182 (280)
243 TIGR01069 mutS2 MutS2 family p 89.9 20 0.00044 38.3 17.3 24 49-72 504-527 (771)
244 PF10212 TTKRSYEDQ: Predicted 89.8 17 0.00036 37.1 15.7 93 121-226 422-514 (518)
245 KOG0946 ER-Golgi vesicle-tethe 89.8 20 0.00043 38.6 16.6 41 54-94 735-775 (970)
246 PF07794 DUF1633: Protein of u 89.8 6.9 0.00015 39.8 12.8 116 105-229 593-721 (790)
247 PF09304 Cortex-I_coil: Cortex 89.6 10 0.00022 30.9 11.6 66 122-197 19-84 (107)
248 PRK10476 multidrug resistance 89.5 19 0.00041 34.0 15.4 18 16-33 40-57 (346)
249 PF10186 Atg14: UV radiation r 89.5 16 0.00035 33.2 18.3 20 75-94 25-44 (302)
250 cd07632 BAR_APPL2 The Bin/Amph 89.4 16 0.00036 33.1 14.5 114 46-180 6-121 (215)
251 PF02050 FliJ: Flagellar FliJ 89.3 8.1 0.00018 29.7 10.8 86 121-206 7-94 (123)
252 KOG0243 Kinesin-like protein [ 89.2 28 0.00061 38.4 17.7 94 121-231 457-550 (1041)
253 TIGR03185 DNA_S_dndD DNA sulfu 89.1 31 0.00066 35.9 24.9 35 57-91 217-251 (650)
254 PF12329 TMF_DNA_bd: TATA elem 89.1 7.6 0.00016 29.3 9.9 9 99-107 9-17 (74)
255 KOG0982 Centrosomal protein Nu 88.9 24 0.00053 35.3 15.7 15 187-201 365-379 (502)
256 smart00503 SynN Syntaxin N-ter 88.8 9.9 0.00021 29.8 11.8 64 118-181 7-74 (117)
257 KOG0239 Kinesin (KAR3 subfamil 88.7 35 0.00076 36.0 17.9 63 164-226 248-313 (670)
258 PF01544 CorA: CorA-like Mg2+ 88.7 16 0.00036 32.8 13.8 89 163-251 150-262 (292)
259 PF02403 Seryl_tRNA_N: Seryl-t 88.6 4.3 9.4E-05 32.0 8.8 16 122-137 46-61 (108)
260 PRK15178 Vi polysaccharide exp 88.6 23 0.00051 35.4 15.7 56 162-229 312-367 (434)
261 PRK10476 multidrug resistance 88.6 19 0.00042 34.0 14.7 13 214-226 198-210 (346)
262 COG1842 PspA Phage shock prote 88.6 19 0.00041 32.8 17.1 47 68-114 50-97 (225)
263 PF05266 DUF724: Protein of un 88.5 9.9 0.00022 33.8 11.8 35 197-231 150-184 (190)
264 PRK00409 recombination and DNA 88.3 26 0.00057 37.5 16.9 49 44-92 504-552 (782)
265 KOG3433 Protein involved in me 88.3 4.6 9.9E-05 36.0 9.3 64 163-226 80-143 (203)
266 KOG4687 Uncharacterized coiled 88.3 24 0.00052 33.5 16.5 86 67-162 48-133 (389)
267 PF04012 PspA_IM30: PspA/IM30 88.2 18 0.00039 32.1 22.0 72 46-117 27-99 (221)
268 cd00890 Prefoldin Prefoldin is 88.1 9.5 0.00021 30.6 10.7 27 196-222 98-124 (129)
269 PF09789 DUF2353: Uncharacteri 88.0 26 0.00056 33.7 19.3 19 208-226 191-209 (319)
270 smart00806 AIP3 Actin interact 88.0 31 0.00066 34.5 19.7 154 76-229 154-326 (426)
271 KOG3478 Prefoldin subunit 6, K 88.0 14 0.00029 30.4 12.0 65 108-178 25-90 (120)
272 PF13805 Pil1: Eisosome compon 87.8 24 0.00053 33.1 15.1 63 127-193 132-194 (271)
273 PF03915 AIP3: Actin interacti 87.7 25 0.00055 35.0 15.3 119 76-194 150-276 (424)
274 KOG4677 Golgi integral membran 87.7 33 0.00073 34.6 19.3 132 65-207 201-345 (554)
275 PRK10246 exonuclease subunit S 87.7 49 0.0011 36.5 21.9 97 125-225 776-879 (1047)
276 COG2433 Uncharacterized conser 87.5 19 0.00041 37.5 14.4 8 149-156 497-504 (652)
277 PF07106 TBPIP: Tat binding pr 87.5 5.4 0.00012 34.2 9.3 67 125-192 71-137 (169)
278 KOG0993 Rab5 GTPase effector R 87.5 33 0.00071 34.3 20.2 162 39-219 284-489 (542)
279 KOG4572 Predicted DNA-binding 87.4 34 0.00073 37.1 16.4 18 72-89 963-980 (1424)
280 PF12252 SidE: Dot/Icm substra 87.4 37 0.00081 37.7 17.0 27 196-222 1197-1223(1439)
281 cd00632 Prefoldin_beta Prefold 87.4 13 0.00028 29.4 12.8 11 127-137 71-81 (105)
282 PF08826 DMPK_coil: DMPK coile 87.2 5.9 0.00013 29.0 7.9 32 128-159 27-58 (61)
283 PF06120 Phage_HK97_TLTM: Tail 87.2 12 0.00025 35.8 12.1 24 164-187 81-104 (301)
284 PRK10246 exonuclease subunit S 87.1 53 0.0012 36.3 25.3 11 50-60 531-541 (1047)
285 cd07651 F-BAR_PombeCdc15_like 87.1 15 0.00032 33.1 12.4 103 124-226 58-163 (236)
286 PRK09343 prefoldin subunit bet 87.0 15 0.00033 30.0 13.5 40 121-160 73-112 (121)
287 PRK14001 potassium-transportin 86.9 0.99 2.2E-05 40.2 4.5 37 3-43 50-93 (189)
288 PRK12704 phosphodiesterase; Pr 86.9 39 0.00085 34.5 17.8 61 145-205 91-151 (520)
289 TIGR03017 EpsF chain length de 86.7 33 0.00071 33.4 18.0 53 169-225 309-361 (444)
290 PF14992 TMCO5: TMCO5 family 86.6 29 0.00063 32.8 16.3 31 64-94 12-42 (280)
291 TIGR00414 serS seryl-tRNA synt 86.5 6.6 0.00014 38.8 10.5 34 118-151 29-62 (418)
292 COG1730 GIM5 Predicted prefold 86.5 19 0.00041 30.8 11.9 42 119-160 94-135 (145)
293 KOG1962 B-cell receptor-associ 86.5 13 0.00029 33.7 11.5 29 164-192 186-214 (216)
294 PRK05431 seryl-tRNA synthetase 86.5 4.2 9.2E-05 40.2 9.1 34 118-151 27-60 (425)
295 PF12252 SidE: Dot/Icm substra 86.5 41 0.00088 37.4 16.6 90 134-224 1201-1309(1439)
296 PF08581 Tup_N: Tup N-terminal 86.4 13 0.00028 28.6 9.8 40 121-160 6-45 (79)
297 TIGR03752 conj_TIGR03752 integ 86.3 13 0.00027 37.6 12.3 41 44-84 61-101 (472)
298 PF09728 Taxilin: Myosin-like 86.3 31 0.00068 32.8 23.9 86 134-226 203-292 (309)
299 KOG4360 Uncharacterized coiled 85.9 45 0.00097 34.2 18.4 72 107-184 231-302 (596)
300 PF08647 BRE1: BRE1 E3 ubiquit 85.8 15 0.00033 28.8 11.4 41 166-206 54-94 (96)
301 KOG0804 Cytoplasmic Zn-finger 85.8 42 0.00091 33.8 16.8 11 46-56 325-335 (493)
302 KOG4657 Uncharacterized conser 85.7 16 0.00034 33.6 11.5 81 104-187 43-123 (246)
303 KOG0962 DNA repair protein RAD 85.6 70 0.0015 36.2 21.6 50 113-162 872-921 (1294)
304 PF04012 PspA_IM30: PspA/IM30 85.5 26 0.00056 31.1 18.8 28 73-100 26-53 (221)
305 cd07672 F-BAR_PSTPIP2 The F-BA 85.4 23 0.0005 32.4 12.8 105 123-227 58-168 (240)
306 TIGR02338 gimC_beta prefoldin, 85.4 17 0.00037 29.0 13.0 35 122-156 70-104 (110)
307 COG3206 GumC Uncharacterized p 85.3 29 0.00064 34.3 14.5 47 143-189 345-391 (458)
308 PF14915 CCDC144C: CCDC144C pr 85.3 35 0.00076 32.5 17.4 129 45-187 27-160 (305)
309 PF04728 LPP: Lipoprotein leuc 85.2 7.4 0.00016 28.1 7.4 16 140-155 10-25 (56)
310 PF14182 YgaB: YgaB-like prote 85.0 5.4 0.00012 30.7 7.0 40 149-189 26-65 (79)
311 COG5293 Predicted ATPase [Gene 84.9 48 0.001 33.7 15.8 25 163-187 405-429 (591)
312 PF05266 DUF724: Protein of un 84.9 28 0.0006 30.9 14.9 57 129-188 127-183 (190)
313 TIGR02231 conserved hypothetic 84.6 21 0.00045 36.1 13.2 42 120-161 132-173 (525)
314 PF07439 DUF1515: Protein of u 84.6 15 0.00032 30.1 9.7 72 68-160 6-77 (112)
315 PF10498 IFT57: Intra-flagella 84.5 26 0.00055 34.2 13.2 102 127-228 235-350 (359)
316 TIGR02473 flagell_FliJ flagell 84.4 20 0.00044 29.0 11.8 43 164-206 68-110 (141)
317 KOG2264 Exostosin EXT1L [Signa 84.0 7.8 0.00017 40.1 9.6 63 118-183 85-147 (907)
318 KOG4403 Cell surface glycoprot 84.0 18 0.00039 36.3 11.9 107 109-219 242-374 (575)
319 PF05700 BCAS2: Breast carcino 83.9 32 0.00069 31.0 12.9 69 121-189 145-214 (221)
320 PF00769 ERM: Ezrin/radixin/mo 83.9 35 0.00076 31.4 14.2 13 213-225 103-115 (246)
321 PF08581 Tup_N: Tup N-terminal 83.8 18 0.00038 27.8 11.5 46 51-96 6-51 (79)
322 PF12329 TMF_DNA_bd: TATA elem 83.6 10 0.00023 28.5 8.1 60 163-229 11-70 (74)
323 KOG0243 Kinesin-like protein [ 83.6 78 0.0017 35.1 20.4 51 167-217 535-585 (1041)
324 KOG1937 Uncharacterized conser 83.2 55 0.0012 33.1 17.4 40 143-185 392-431 (521)
325 PRK13729 conjugal transfer pil 83.1 3.9 8.5E-05 41.2 7.2 39 142-180 78-120 (475)
326 KOG1962 B-cell receptor-associ 83.0 22 0.00047 32.4 11.2 57 166-222 153-209 (216)
327 PF13870 DUF4201: Domain of un 82.9 30 0.00064 29.8 19.5 23 206-228 145-167 (177)
328 PRK13997 potassium-transportin 82.7 1.9 4.1E-05 38.5 4.3 35 3-43 54-95 (193)
329 COG3352 FlaC Putative archaeal 82.6 14 0.00031 31.9 9.3 76 107-184 49-128 (157)
330 PRK10929 putative mechanosensi 82.4 90 0.002 35.0 18.7 54 134-190 259-312 (1109)
331 PF14817 HAUS5: HAUS augmin-li 82.3 22 0.00048 37.2 12.5 92 115-206 75-166 (632)
332 cd07657 F-BAR_Fes_Fer The F-BA 82.1 40 0.00088 30.8 18.8 97 122-221 115-230 (237)
333 PF13805 Pil1: Eisosome compon 82.1 46 0.00099 31.4 18.2 91 100-199 122-212 (271)
334 PF05278 PEARLI-4: Arabidopsis 81.9 33 0.00071 32.3 12.3 43 118-160 199-241 (269)
335 TIGR02338 gimC_beta prefoldin, 81.8 24 0.00052 28.2 10.1 25 107-131 22-46 (110)
336 PRK10929 putative mechanosensi 81.8 95 0.0021 34.8 23.1 87 138-224 206-297 (1109)
337 COG3883 Uncharacterized protei 81.8 46 0.001 31.2 25.4 51 44-94 40-90 (265)
338 KOG4687 Uncharacterized coiled 81.8 49 0.0011 31.5 13.7 95 57-157 91-205 (389)
339 PF15290 Syntaphilin: Golgi-lo 81.6 31 0.00067 32.7 11.9 51 166-226 119-169 (305)
340 PRK00315 potassium-transportin 81.5 2.1 4.5E-05 38.3 4.1 38 3-43 50-94 (193)
341 PF01576 Myosin_tail_1: Myosin 81.5 0.46 1E-05 51.0 0.0 35 60-94 339-373 (859)
342 KOG0972 Huntingtin interacting 81.5 51 0.0011 31.6 13.4 80 105-187 276-358 (384)
343 PF09738 DUF2051: Double stran 81.3 51 0.0011 31.4 15.7 87 44-137 79-165 (302)
344 PRK11281 hypothetical protein; 81.3 99 0.0021 34.7 23.4 88 138-225 225-318 (1113)
345 PLN02678 seryl-tRNA synthetase 81.3 7.7 0.00017 38.9 8.5 33 119-151 33-65 (448)
346 PRK13995 potassium-transportin 81.2 2.5 5.3E-05 38.1 4.5 39 3-43 49-103 (203)
347 PF05276 SH3BP5: SH3 domain-bi 81.2 45 0.00098 30.7 17.2 99 48-159 69-168 (239)
348 COG1322 Predicted nuclease of 81.2 64 0.0014 32.5 24.1 107 124-233 82-199 (448)
349 PF13863 DUF4200: Domain of un 81.0 27 0.00058 28.0 13.8 100 125-224 6-106 (126)
350 PF05837 CENP-H: Centromere pr 80.9 27 0.00058 28.0 10.6 69 119-191 10-78 (106)
351 PF05700 BCAS2: Breast carcino 80.9 42 0.00091 30.2 16.9 9 1-9 1-9 (221)
352 PF12592 DUF3763: Protein of u 80.8 9.6 0.00021 27.5 6.6 54 167-220 3-56 (57)
353 KOG4637 Adaptor for phosphoino 80.7 62 0.0013 32.0 17.7 54 44-97 134-187 (464)
354 KOG0976 Rho/Rac1-interacting s 80.6 92 0.002 33.9 19.9 45 166-210 293-341 (1265)
355 PF15450 DUF4631: Domain of un 80.6 72 0.0016 32.7 21.8 79 137-224 384-466 (531)
356 PF04799 Fzo_mitofusin: fzo-li 80.4 11 0.00024 33.1 8.2 40 144-183 124-163 (171)
357 TIGR03495 phage_LysB phage lys 80.4 33 0.00071 29.0 10.7 35 61-95 24-58 (135)
358 PRK00409 recombination and DNA 80.4 86 0.0019 33.7 16.4 16 166-181 579-594 (782)
359 PF15254 CCDC14: Coiled-coil d 80.4 90 0.0019 33.6 18.9 13 57-69 357-369 (861)
360 PF05010 TACC: Transforming ac 80.3 45 0.00097 30.1 21.1 56 118-173 96-152 (207)
361 TIGR02231 conserved hypothetic 80.2 39 0.00084 34.1 13.3 47 166-226 126-172 (525)
362 TIGR02894 DNA_bind_RsfA transc 80.1 28 0.00061 30.3 10.4 64 157-220 90-153 (161)
363 TIGR03545 conserved hypothetic 80.0 21 0.00044 36.9 11.2 28 70-98 178-205 (555)
364 TIGR00681 kdpC K+-transporting 79.9 3 6.4E-05 37.1 4.5 38 3-43 48-92 (187)
365 PF05529 Bap31: B-cell recepto 79.9 23 0.00051 30.8 10.3 16 167-182 157-172 (192)
366 TIGR00383 corA magnesium Mg(2+ 79.6 31 0.00066 32.1 11.5 12 241-252 275-287 (318)
367 TIGR00293 prefoldin, archaeal 79.5 5.9 0.00013 32.1 6.0 38 185-222 86-123 (126)
368 PRK11519 tyrosine kinase; Prov 79.5 37 0.00081 35.8 13.3 52 163-225 338-389 (719)
369 COG0598 CorA Mg2+ and Co2+ tra 79.2 58 0.0013 30.8 14.0 90 165-254 181-293 (322)
370 cd07648 F-BAR_FCHO The F-BAR ( 79.0 46 0.00099 30.3 12.3 103 124-227 58-164 (261)
371 PF01920 Prefoldin_2: Prefoldi 78.9 27 0.00059 26.8 10.9 39 120-158 63-101 (106)
372 PF09304 Cortex-I_coil: Cortex 78.8 34 0.00074 27.9 13.6 28 125-152 43-70 (107)
373 KOG4360 Uncharacterized coiled 78.7 76 0.0017 32.6 14.3 41 122-162 264-304 (596)
374 KOG0978 E3 ubiquitin ligase in 78.7 96 0.0021 33.0 24.1 106 121-226 498-621 (698)
375 PF12072 DUF3552: Domain of un 78.6 47 0.001 29.4 16.9 20 75-94 69-88 (201)
376 PF00804 Syntaxin: Syntaxin; 78.6 26 0.00056 26.4 10.6 60 120-179 8-71 (103)
377 PF07851 TMPIT: TMPIT-like pro 78.4 30 0.00064 33.5 11.1 58 125-186 3-61 (330)
378 PF06637 PV-1: PV-1 protein (P 78.4 74 0.0016 31.5 17.4 147 85-257 264-442 (442)
379 PF06156 DUF972: Protein of un 78.1 18 0.00038 29.3 8.2 52 105-159 4-55 (107)
380 cd07653 F-BAR_CIP4-like The F- 78.0 52 0.0011 29.6 19.2 23 196-218 205-227 (251)
381 TIGR03794 NHPM_micro_HlyD NHPM 77.9 71 0.0015 31.1 17.7 23 205-227 226-248 (421)
382 PF04849 HAP1_N: HAP1 N-termin 77.9 67 0.0015 30.8 17.3 31 44-74 162-192 (306)
383 PRK13169 DNA replication intia 77.9 18 0.00039 29.5 8.1 52 105-159 4-55 (110)
384 PF06005 DUF904: Protein of un 77.8 27 0.00059 26.2 9.8 43 118-160 17-59 (72)
385 KOG4460 Nuclear pore complex, 77.8 93 0.002 32.4 15.7 128 45-189 591-741 (741)
386 cd07598 BAR_FAM92 The Bin/Amph 77.7 53 0.0012 29.5 20.0 67 124-190 95-161 (211)
387 PF13166 AAA_13: AAA domain 77.6 93 0.002 32.3 23.4 22 204-225 436-457 (712)
388 PF12777 MT: Microtubule-bindi 77.3 7.1 0.00015 37.4 6.7 71 119-189 214-288 (344)
389 PRK15422 septal ring assembly 77.3 28 0.00062 26.8 8.5 41 121-161 27-67 (79)
390 TIGR03319 YmdA_YtgF conserved 77.2 90 0.0019 31.9 18.1 56 145-200 85-140 (514)
391 PRK15422 septal ring assembly 77.2 29 0.00062 26.8 8.5 64 169-232 9-72 (79)
392 PF05483 SCP-1: Synaptonemal c 77.2 1.1E+02 0.0023 32.7 25.5 66 163-228 586-651 (786)
393 KOG4302 Microtubule-associated 76.9 1E+02 0.0023 32.5 15.4 105 68-180 59-176 (660)
394 PRK13999 potassium-transportin 76.9 4.2 9.2E-05 36.5 4.6 39 3-43 50-105 (201)
395 PRK13729 conjugal transfer pil 76.9 8.9 0.00019 38.7 7.3 40 147-186 76-119 (475)
396 PRK11085 magnesium/nickel/coba 76.9 62 0.0013 30.9 12.8 59 194-252 209-285 (316)
397 PRK14002 potassium-transportin 76.8 4 8.7E-05 36.3 4.4 35 3-43 48-89 (186)
398 PHA02607 wac fibritin; Provisi 76.7 66 0.0014 32.4 13.2 107 118-224 91-221 (454)
399 PF04582 Reo_sigmaC: Reovirus 76.6 1.8 3.9E-05 41.6 2.4 34 199-232 119-152 (326)
400 PF02183 HALZ: Homeobox associ 76.5 13 0.00029 25.4 6.0 36 121-156 7-42 (45)
401 PF07139 DUF1387: Protein of u 76.5 64 0.0014 30.9 12.6 97 122-225 156-255 (302)
402 PF06632 XRCC4: DNA double-str 76.5 38 0.00083 32.8 11.4 53 126-178 151-208 (342)
403 PF15035 Rootletin: Ciliary ro 76.5 54 0.0012 28.9 11.9 37 183-226 86-122 (182)
404 PRK00578 prfB peptide chain re 76.3 55 0.0012 32.1 12.5 19 208-226 93-112 (367)
405 PRK06008 flgL flagellar hook-a 76.3 73 0.0016 30.4 13.9 114 72-185 12-126 (348)
406 PRK00106 hypothetical protein; 76.3 99 0.0021 31.9 20.1 61 144-204 105-165 (535)
407 PF07889 DUF1664: Protein of u 75.9 45 0.00098 27.8 13.6 38 121-158 84-121 (126)
408 PF10191 COG7: Golgi complex c 75.7 1.2E+02 0.0026 32.5 19.3 131 58-213 58-188 (766)
409 PF11221 Med21: Subunit 21 of 75.4 42 0.00091 28.2 10.2 75 66-154 65-139 (144)
410 PRK13453 F0F1 ATP synthase sub 75.4 52 0.0011 28.3 11.0 19 178-196 114-132 (173)
411 PF04124 Dor1: Dor1-like famil 75.3 70 0.0015 30.5 12.8 37 164-200 53-89 (338)
412 cd00584 Prefoldin_alpha Prefol 75.1 43 0.00092 27.1 10.6 36 187-222 89-124 (129)
413 TIGR00634 recN DNA repair prot 74.8 1E+02 0.0022 31.4 21.5 21 163-183 300-320 (563)
414 PF10153 DUF2361: Uncharacteri 74.7 46 0.001 27.3 11.5 38 52-89 3-40 (114)
415 PF05008 V-SNARE: Vesicle tran 74.6 32 0.00069 25.4 8.7 19 163-181 60-78 (79)
416 KOG2991 Splicing regulator [RN 74.6 78 0.0017 29.9 16.1 55 138-192 255-313 (330)
417 PF14257 DUF4349: Domain of un 74.5 23 0.00049 32.4 9.0 66 65-149 127-192 (262)
418 TIGR03752 conj_TIGR03752 integ 74.3 50 0.0011 33.4 11.8 23 68-90 64-86 (472)
419 PF15463 ECM11: Extracellular 74.3 19 0.0004 30.2 7.7 52 128-179 82-134 (139)
420 PF05008 V-SNARE: Vesicle tran 74.1 17 0.00036 26.9 6.7 44 118-161 31-75 (79)
421 PF12711 Kinesin-relat_1: Kine 74.0 40 0.00086 26.4 8.8 19 119-137 24-42 (86)
422 PF05529 Bap31: B-cell recepto 74.0 51 0.0011 28.6 10.7 19 74-92 122-140 (192)
423 PF04728 LPP: Lipoprotein leuc 73.9 31 0.00067 24.9 7.6 47 50-96 4-50 (56)
424 KOG4673 Transcription factor T 73.8 1.3E+02 0.0029 32.2 23.8 89 144-232 527-631 (961)
425 PF06248 Zw10: Centromere/kine 73.7 1.1E+02 0.0024 31.3 15.1 122 96-224 7-140 (593)
426 TIGR01069 mutS2 MutS2 family p 73.6 88 0.0019 33.5 14.2 13 167-179 575-587 (771)
427 PF06133 DUF964: Protein of un 73.5 41 0.00088 26.2 9.8 83 107-191 2-85 (108)
428 TIGR00020 prfB peptide chain r 73.4 51 0.0011 32.3 11.4 20 208-227 93-113 (364)
429 PRK13676 hypothetical protein; 73.4 41 0.00088 26.9 9.2 82 106-189 4-86 (114)
430 PF10046 BLOC1_2: Biogenesis o 73.4 43 0.00093 26.4 13.2 24 68-91 5-28 (99)
431 KOG1003 Actin filament-coating 73.1 71 0.0015 28.8 20.2 160 63-222 4-195 (205)
432 PF05335 DUF745: Protein of un 73.0 68 0.0015 28.5 15.9 24 166-189 146-169 (188)
433 PRK09866 hypothetical protein; 72.9 89 0.0019 33.3 13.6 98 82-189 419-522 (741)
434 PF10805 DUF2730: Protein of u 72.7 30 0.00066 27.6 8.2 28 125-152 34-61 (106)
435 KOG3647 Predicted coiled-coil 72.7 89 0.0019 29.7 13.9 100 46-159 78-180 (338)
436 PRK09841 cryptic autophosphory 72.6 1.3E+02 0.0028 31.8 15.1 32 65-96 269-300 (726)
437 PRK11281 hypothetical protein; 72.6 1.7E+02 0.0037 32.9 21.6 29 69-97 79-107 (1113)
438 PF03114 BAR: BAR domain; Int 72.5 60 0.0013 27.6 19.3 37 44-80 28-64 (229)
439 KOG3478 Prefoldin subunit 6, K 72.5 53 0.0012 27.0 10.1 100 120-229 6-113 (120)
440 PF15397 DUF4618: Domain of un 72.4 85 0.0018 29.4 21.5 51 57-107 39-93 (258)
441 PF10212 TTKRSYEDQ: Predicted 72.3 93 0.002 31.9 13.2 69 123-191 445-514 (518)
442 KOG1981 SOK1 kinase belonging 72.3 61 0.0013 33.1 11.9 62 146-224 217-278 (513)
443 PF05565 Sipho_Gp157: Siphovir 72.0 56 0.0012 28.0 10.3 42 118-159 46-87 (162)
444 PF10458 Val_tRNA-synt_C: Valy 71.5 30 0.00064 25.2 7.3 55 133-187 4-62 (66)
445 TIGR03495 phage_LysB phage lys 71.3 61 0.0013 27.4 10.0 33 123-155 23-55 (135)
446 COG3879 Uncharacterized protei 70.9 22 0.00049 32.9 7.9 53 130-182 54-107 (247)
447 PF09766 FimP: Fms-interacting 70.7 46 0.001 32.2 10.5 108 121-228 14-137 (355)
448 cd07673 F-BAR_FCHO2 The F-BAR 70.5 91 0.002 28.9 12.2 104 124-228 65-172 (269)
449 PLN02320 seryl-tRNA synthetase 70.2 30 0.00066 35.3 9.4 29 123-151 97-125 (502)
450 KOG3156 Uncharacterized membra 70.0 88 0.0019 28.5 12.7 62 164-226 116-194 (220)
451 TIGR02977 phageshock_pspA phag 70.0 82 0.0018 28.2 14.4 42 121-162 33-74 (219)
452 PLN02939 transferase, transfer 70.0 1.8E+02 0.004 32.2 21.2 15 214-228 436-450 (977)
453 TIGR03545 conserved hypothetic 69.8 36 0.00077 35.1 9.9 11 16-26 99-109 (555)
454 cd07666 BAR_SNX7 The Bin/Amphi 69.8 93 0.002 28.7 18.6 58 127-187 143-200 (243)
455 PRK06231 F0F1 ATP synthase sub 69.8 77 0.0017 28.2 11.0 18 176-193 142-159 (205)
456 PF04350 PilO: Pilus assembly 69.4 7.7 0.00017 31.6 4.2 46 144-189 3-48 (144)
457 PRK00888 ftsB cell division pr 69.3 13 0.00028 29.9 5.4 36 119-154 27-62 (105)
458 PF02050 FliJ: Flagellar FliJ 69.2 49 0.0011 25.2 14.4 48 123-170 49-96 (123)
459 PF14282 FlxA: FlxA-like prote 69.2 16 0.00035 29.3 5.9 16 166-181 53-68 (106)
460 KOG2751 Beclin-like protein [S 69.1 1.1E+02 0.0024 30.7 12.6 9 214-222 261-269 (447)
461 TIGR02449 conserved hypothetic 68.9 45 0.00097 24.7 8.3 63 51-127 2-64 (65)
462 cd00179 SynN Syntaxin N-termin 68.9 63 0.0014 26.4 13.4 62 119-180 6-71 (151)
463 PF07200 Mod_r: Modifier of ru 68.9 66 0.0014 26.7 12.6 35 125-159 54-88 (150)
464 PF05278 PEARLI-4: Arabidopsis 68.7 1.1E+02 0.0023 28.9 13.3 29 113-141 153-181 (269)
465 KOG0240 Kinesin (SMY1 subfamil 68.4 1.6E+02 0.0034 30.8 15.8 9 7-15 303-311 (607)
466 KOG2958 Galactose-1-phosphate 68.4 3.1 6.6E-05 39.6 1.8 19 2-20 104-122 (354)
467 PRK15136 multidrug efflux syst 68.4 1.2E+02 0.0026 29.4 14.6 44 46-89 96-139 (390)
468 PF01920 Prefoldin_2: Prefoldi 68.3 52 0.0011 25.2 10.6 23 121-143 7-29 (106)
469 PF02669 KdpC: K+-transporting 68.2 9.4 0.0002 34.0 4.7 47 3-52 49-103 (188)
470 PRK14474 F0F1 ATP synthase sub 68.2 78 0.0017 29.1 11.0 27 167-196 93-119 (250)
471 COG3206 GumC Uncharacterized p 68.2 1.3E+02 0.0028 29.7 16.8 67 152-229 329-396 (458)
472 COG1566 EmrA Multidrug resista 68.1 60 0.0013 31.6 10.6 21 206-226 176-196 (352)
473 PF04912 Dynamitin: Dynamitin 68.0 1.2E+02 0.0027 29.4 16.0 60 121-180 263-328 (388)
474 COG4487 Uncharacterized protei 67.7 1.4E+02 0.0031 30.0 18.5 49 107-155 95-144 (438)
475 PF05384 DegS: Sensor protein 67.5 83 0.0018 27.3 17.9 57 100-166 75-131 (159)
476 PF02994 Transposase_22: L1 tr 67.5 15 0.00033 35.8 6.4 109 115-230 80-189 (370)
477 PF05103 DivIVA: DivIVA protei 67.5 2.8 6.1E-05 33.9 1.2 44 46-89 22-65 (131)
478 TIGR00293 prefoldin, archaeal 67.4 46 0.00099 26.8 8.4 23 201-223 95-117 (126)
479 PF10267 Tmemb_cc2: Predicted 67.3 1.4E+02 0.003 29.7 17.1 41 50-93 213-253 (395)
480 cd00179 SynN Syntaxin N-termin 67.1 69 0.0015 26.2 13.8 92 118-209 15-112 (151)
481 PF12795 MscS_porin: Mechanose 67.0 98 0.0021 27.9 15.3 150 60-228 28-179 (240)
482 smart00502 BBC B-Box C-termina 67.0 57 0.0012 25.2 13.8 26 165-190 73-98 (127)
483 PF11570 E2R135: Coiled-coil r 66.7 79 0.0017 26.7 11.2 64 121-187 38-114 (136)
484 PF12709 Kinetocho_Slk19: Cent 66.6 45 0.00098 26.2 7.7 21 203-223 53-73 (87)
485 PRK09546 zntB zinc transporter 66.6 1.2E+02 0.0025 28.6 13.7 13 241-253 281-294 (324)
486 KOG0244 Kinesin-like protein [ 66.6 99 0.0021 33.8 12.6 33 74-106 488-520 (913)
487 PRK11546 zraP zinc resistance 66.5 31 0.00068 29.4 7.4 16 172-187 90-105 (143)
488 PRK11020 hypothetical protein; 66.5 61 0.0013 26.7 8.7 64 74-153 2-66 (118)
489 PF02841 GBP_C: Guanylate-bind 66.4 1.1E+02 0.0025 28.5 15.9 118 58-177 178-297 (297)
490 PF13863 DUF4200: Domain of un 66.2 66 0.0014 25.7 16.7 105 46-160 2-108 (126)
491 PF04977 DivIC: Septum formati 65.9 21 0.00046 26.0 5.7 44 118-161 16-59 (80)
492 KOG3856 Uncharacterized conser 65.8 16 0.00035 30.5 5.3 34 128-161 12-45 (135)
493 KOG3647 Predicted coiled-coil 65.8 1.2E+02 0.0027 28.7 15.0 128 70-208 46-177 (338)
494 cd07649 F-BAR_GAS7 The F-BAR ( 65.8 1.1E+02 0.0023 27.9 13.7 104 124-227 58-168 (233)
495 PF02994 Transposase_22: L1 tr 65.8 13 0.00028 36.2 5.6 108 101-208 80-188 (370)
496 PF14182 YgaB: YgaB-like prote 65.7 60 0.0013 25.0 8.9 62 103-169 8-70 (79)
497 PF10805 DUF2730: Protein of u 65.6 68 0.0015 25.6 9.5 71 61-157 26-96 (106)
498 PF11180 DUF2968: Protein of u 65.5 1E+02 0.0022 27.6 11.8 78 50-158 109-186 (192)
499 COG1344 FlgL Flagellin and rel 65.2 74 0.0016 30.6 10.7 76 108-183 46-124 (360)
500 PF04977 DivIC: Septum formati 65.1 25 0.00054 25.6 5.9 43 127-169 18-60 (80)
No 1
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.2e-26 Score=237.95 Aligned_cols=210 Identities=18% Similarity=0.242 Sum_probs=192.9
Q ss_pred cccCceEE---------EeecCC---CcccccCCccCCCCCCCCCCCCCCCCch-----HHHHHHHHHHHHH---HHHHH
Q 023704 2 NIYGNSLH---------TTLHNH---SQFTMSGRRVLREPPLSTRALPPQHSPS-----LHHLEDRIAIQHS---DIQSL 61 (278)
Q Consensus 2 ~ifG~tli---------vtfhp~---~svTleGD~ydpeG~LsGGs~p~~~~~l-----~~~Le~~L~~q~~---eIq~l 61 (278)
+||||||| |||||. |||||+||+|||+|||||||++.+..+| ++.++.+|..++. .+.+.
T Consensus 620 fvFG~tlVc~~~d~AKkVaf~~~i~~rsVTl~GDV~dP~GtlTGGs~~~~a~~L~~l~~l~~~~~~~~~~q~el~~le~e 699 (1174)
T KOG0933|consen 620 FVFGSTLVCDSLDVAKKVAFDPKIRTRSVTLEGDVYDPSGTLTGGSRSKGADLLRQLQKLKQAQKELRAIQKELEALERE 699 (1174)
T ss_pred HHhCceEEecCHHHHHHhhcccccccceeeecCceeCCCCcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999 999999 8899999999999999999999888887 8888888888888 67888
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 62 LQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVI 141 (278)
Q Consensus 62 l~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~ 141 (278)
|...+..+..+..|+++|++..|+|.++..++..++..+ + +..++.++.++..++++|.+....
T Consensus 700 L~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~------~----------~~~~~~~~e~v~e~~~~Ike~~~~ 763 (1174)
T KOG0933|consen 700 LKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHK------L----------LDDLKELLEEVEESEQQIKEKERA 763 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhh------H----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 8 899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhh--------------hhhhhhhhhhchhhHHHHHHHHH
Q 023704 142 KQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKG--------------RAAIECEKKNRASNHEQREIMEK 206 (278)
Q Consensus 142 rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~--------------raa~e~ekk~~~e~~eq~q~mek 206 (278)
.+....+|..|+++|.++.++ ..++++|.++|+.+++.+... ...+|..++....+-.|+..|++
T Consensus 764 ~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~ 843 (1174)
T KOG0933|consen 764 LKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEK 843 (1174)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 999999999998887766544 44556667777778889999999
Q ss_pred hHHHHHHHHHHHHHHHHhHHh
Q 023704 207 NIISVAQQIERLQAELANAEK 227 (278)
Q Consensus 207 nl~~m~~e~eklrael~n~~~ 227 (278)
++-++..|+..|++.+.+++.
T Consensus 844 ~~~~l~~e~~~l~~kv~~~~~ 864 (1174)
T KOG0933|consen 844 QISSLKSELGNLEAKVDKVEK 864 (1174)
T ss_pred HHHHHHHHHHHHHHHHHhHHh
Confidence 999999999999999998873
No 2
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.45 E-value=5.4e-11 Score=126.69 Aligned_cols=33 Identities=12% Similarity=0.275 Sum_probs=27.9
Q ss_pred cccCceEEE---------eecCCCcccccCCccCCCCCCCCCC
Q 023704 2 NIYGNSLHT---------TLHNHSQFTMSGRRVLREPPLSTRA 35 (278)
Q Consensus 2 ~ifG~tliv---------tfhp~~svTleGD~ydpeG~LsGGs 35 (278)
.+||++||| + ++-++||++||+++|.|+++||+
T Consensus 618 ~~lg~~~v~~~l~~a~~~~-~~~~~vTldG~~~~~~G~~tgG~ 659 (1164)
T TIGR02169 618 YVFGDTLVVEDIEAARRLM-GKYRMVTLEGELFEKSGAMTGGS 659 (1164)
T ss_pred HHCCCeEEEcCHHHHHHHh-cCCcEEEeCceeEcCCcCccCCC
Confidence 489999982 2 23399999999999999999997
No 3
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.37 E-value=2.3e-10 Score=124.06 Aligned_cols=55 Identities=18% Similarity=0.209 Sum_probs=39.1
Q ss_pred cccCceEE---------EeecCC---CcccccCCccCCCCCCCCCCCCCCCCch----HHHHHHHHHHHHH
Q 023704 2 NIYGNSLH---------TTLHNH---SQFTMSGRRVLREPPLSTRALPPQHSPS----LHHLEDRIAIQHS 56 (278)
Q Consensus 2 ~ifG~tli---------vtfhp~---~svTleGD~ydpeG~LsGGs~p~~~~~l----~~~Le~~L~~q~~ 56 (278)
++||+|+| ++|... |.|||+||+++|+|+++||++...+++. +..|+.++.....
T Consensus 611 ~~l~~t~Iv~~l~~A~~l~~~~~~~~riVTl~G~~~~~~G~~tGG~~~~~~~~~~~~~l~~l~~~l~~~~~ 681 (1163)
T COG1196 611 FVLGDTLVVDDLEQARRLARKLRIKYRIVTLDGDLVEPSGSITGGSRNKRSSLAQKRELKELEEELAELEA 681 (1163)
T ss_pred HHhCCeEEecCHHHHHHHHHhcCCCceEEecCCcEEeCCeeeecCCccccchhhHHHHHHHHHHHHHHHHH
Confidence 58999999 455552 9999999999999999999765544422 2234455544444
No 4
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.89 E-value=4.9e-07 Score=94.64 Aligned_cols=155 Identities=17% Similarity=0.266 Sum_probs=90.8
Q ss_pred cccCceEEE------ee---cCC-CcccccCCccCCCCCCCCCCCCCCCCch-------------------HHHHHHHHH
Q 023704 2 NIYGNSLHT------TL---HNH-SQFTMSGRRVLREPPLSTRALPPQHSPS-------------------LHHLEDRIA 52 (278)
Q Consensus 2 ~ifG~tliv------tf---hp~-~svTleGD~ydpeG~LsGGs~p~~~~~l-------------------~~~Le~~L~ 52 (278)
.|||+|+|| +. .-. .||||+||..+.-|+|+||-.....+-| ++.++.+|.
T Consensus 616 ~Vfgktivcrdl~qa~~~ak~~~ln~ITl~GDqvskkG~lTgGy~D~krsrLe~~k~~~~~~~~~~~l~~~L~~~r~~i~ 695 (1200)
T KOG0964|consen 616 HVFGKTIVCRDLEQALRLAKKHELNCITLSGDQVSKKGVLTGGYEDQKRSRLELLKNVNESRSELKELQESLDEVRNEIE 695 (1200)
T ss_pred HHhCceEEeccHHHHHHHHHhcCCCeEEeccceecccCCccccchhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999992 11 111 8999999999999999999653222222 444555555
Q ss_pred HHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhH---HHHHHHHHHHhhhhHHH-----
Q 023704 53 IQHSDIQSLLQDNQRL-------AATHVALKQELSLAEQELRHLSSVAASVKAER---DAEVRELYEKSLKLDAE----- 117 (278)
Q Consensus 53 ~q~~eIq~ll~dnqrl-------a~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~---e~~~r~l~~k~~kleae----- 117 (278)
...++|..+..+.|++ -..|..|+++++..+.+.+.++..+.-..-.- ....+.+-+..--+|++
T Consensus 696 ~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~sel 775 (1200)
T KOG0964|consen 696 DIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESELGSEL 775 (1200)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHH
Confidence 5555555555555554 45566666666666666555554443222111 11222233333333444
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 118 --------LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDL 156 (278)
Q Consensus 118 --------lr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL 156 (278)
..++..+..+|.+++.++..+...+.++...+..++..|
T Consensus 776 ~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l 822 (1200)
T KOG0964|consen 776 FSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEANL 822 (1200)
T ss_pred HhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777888888877777777777666555555443
No 5
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.88 E-value=4.1e-07 Score=96.64 Aligned_cols=34 Identities=9% Similarity=0.143 Sum_probs=29.5
Q ss_pred ccCceEE---------EeecCC---CcccccCCccCCCCCCCCCCC
Q 023704 3 IYGNSLH---------TTLHNH---SQFTMSGRRVLREPPLSTRAL 36 (278)
Q Consensus 3 ifG~tli---------vtfhp~---~svTleGD~ydpeG~LsGGs~ 36 (278)
+.+|||| |+|-+. |-|||+|-..+++||||||..
T Consensus 714 aLrdtLV~d~LeQAtRiaygk~rr~RVvTL~G~lIe~SGtmtGGG~ 759 (1293)
T KOG0996|consen 714 ALRDTLVADNLEQATRIAYGKDRRWRVVTLDGSLIEKSGTMTGGGK 759 (1293)
T ss_pred HHhhhhhhcCHHHHHHHhhcCCCceEEEEecceeecccccccCCCC
Confidence 4578888 889887 799999999999999999843
No 6
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.70 E-value=1.4e-05 Score=85.31 Aligned_cols=11 Identities=18% Similarity=-0.100 Sum_probs=6.9
Q ss_pred ccCCccCCCCC
Q 023704 20 MSGRRVLREPP 30 (278)
Q Consensus 20 leGD~ydpeG~ 30 (278)
++|+++.|+|.
T Consensus 643 ~~g~~v~~~G~ 653 (1179)
T TIGR02168 643 PGYRIVTLDGD 653 (1179)
T ss_pred CCceEEecCCE
Confidence 46666666663
No 7
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.40 E-value=8.2e-05 Score=79.09 Aligned_cols=36 Identities=14% Similarity=0.142 Sum_probs=32.4
Q ss_pred cccCceEE---------EeecCC---CcccccCCccCCCCCCCCCCCC
Q 023704 2 NIYGNSLH---------TTLHNH---SQFTMSGRRVLREPPLSTRALP 37 (278)
Q Consensus 2 ~ifG~tli---------vtfhp~---~svTleGD~ydpeG~LsGGs~p 37 (278)
.+|||+|| ++|... +.|||||-.|--+|.+||||..
T Consensus 599 ~a~gn~Lvcds~e~Ar~l~y~~~~r~k~valdGtl~~ksGlmsGG~s~ 646 (1141)
T KOG0018|consen 599 FACGNALVCDSVEDARDLAYGGEIRFKVVALDGTLIHKSGLMSGGSSG 646 (1141)
T ss_pred HHhccceecCCHHHHHHhhhcccccceEEEeeeeEEeccceecCCccC
Confidence 37999999 888777 8999999999999999999955
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.37 E-value=0.00014 Score=77.67 Aligned_cols=57 Identities=16% Similarity=0.101 Sum_probs=33.5
Q ss_pred ccCceEEEee------------cCCCcccccCCccCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 023704 3 IYGNSLHTTL------------HNHSQFTMSGRRVLREPPLSTRALPPQHSPSLHHLEDRIAIQHSDIQSL 61 (278)
Q Consensus 3 ifG~tlivtf------------hp~~svTleGD~ydpeG~LsGGs~p~~~~~l~~~Le~~L~~q~~eIq~l 61 (278)
+||++.|||- ..+..||.+|+...+.|..+||++....... .++.++.....++..+
T Consensus 621 ~~~~~~ivt~l~~a~~~~~~~~~~g~~v~~~G~~~~~gg~~~~~~~~~~~~~~--~l~~e~~~l~~~~~~l 689 (1179)
T TIGR02168 621 LLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSIL--ERRREIEELEEKIEEL 689 (1179)
T ss_pred HhCCceEeCCHHHHHHHHHHcCCCceEEecCCEEEcCCceEecCccccccchh--hHHHHHHHHHHHHHHH
Confidence 5777777771 1348899999988888888766532222222 4444444444433333
No 9
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.27 E-value=0.00095 Score=67.45 Aligned_cols=171 Identities=19% Similarity=0.301 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 023704 47 LEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHA 126 (278)
Q Consensus 47 Le~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~ 126 (278)
|+.++.....+...++..+..|-.....|+.++...+.+|.........+.... -++ ....+.++.
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~----kel----------~~~~e~l~~ 206 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQ----KEL----------TESSEELKE 206 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH----------HHHHHHHHH
Confidence 455666555666667777777777777777777777777766666555444432 123 223444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH----HHHHhhhhhh-------hhhhhhch
Q 023704 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETER----QEIHKGRAAI-------ECEKKNRA 195 (278)
Q Consensus 127 El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~Lr----qEl~~~raa~-------e~ekk~~~ 195 (278)
|...+..+..++.....+|..+|..+++...+......++..+..+.+.++ +.|+..-..+ ..-+.-+.
T Consensus 207 E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e 286 (546)
T PF07888_consen 207 ERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENE 286 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 555555555555555555555555555444333333334444444443333 2222221222 12223334
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHhHH-hhHHH
Q 023704 196 SNHEQREIMEKNIISVAQQIERLQAELANAE-KRARA 231 (278)
Q Consensus 196 e~~eq~q~meknl~~m~~e~eklrael~n~~-~r~~a 231 (278)
.+.+|++.++.-+-+-=++++.|+.||..+- .|.|.
T Consensus 287 ~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt 323 (546)
T PF07888_consen 287 ALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRT 323 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888888889999999987764 44444
No 10
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.26 E-value=0.00087 Score=69.89 Aligned_cols=204 Identities=22% Similarity=0.322 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhhHhH----------HHHHHH
Q 023704 44 LHHLEDRIAIQHSDIQSLLQDNQRLAAT-------HVALKQELSLAEQELRHLSSVAASVKAER----------DAEVRE 106 (278)
Q Consensus 44 ~~~Le~~L~~q~~eIq~ll~dnqrla~~-------~~~L~qEL~laqhEL~~l~~~i~~~~ae~----------e~~~r~ 106 (278)
...||..++.+..||+..-.-.+.|-.+ ...|+.+|...++|...|+.++..+...+ |-++++
T Consensus 420 ~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~e 499 (697)
T PF09726_consen 420 ISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAE 499 (697)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777776655443333333222 45677778888888887777777666554 333444
Q ss_pred HHHHhhhhHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023704 107 LYEKSLKLDAELRV--------------------------IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (278)
Q Consensus 107 l~~k~~kleaelr~--------------------------~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~ 160 (278)
.-++...+|+.|.. .|..|....++..|+++|..+.+....++..+++|+.+++
T Consensus 500 E~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr 579 (697)
T PF09726_consen 500 ERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELR 579 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444411 1335666677777777777777777777888887776554
Q ss_pred h---h-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHH-------HHHHHHHhHHHHHHHHHHHHHHHHhHHhhH
Q 023704 161 D---E-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHE-------QREIMEKNIISVAQQIERLQAELANAEKRA 229 (278)
Q Consensus 161 ~---d-~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~e-------q~q~meknl~~m~~e~eklrael~n~~~r~ 229 (278)
. + ..-...|...|..|+.+-.+++...-.|.+.+.|+.. |+..-+.-+..==+||.-|++.|+-.-
T Consensus 580 ~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~--- 656 (697)
T PF09726_consen 580 KYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL--- 656 (697)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 3 2 3457888999999999999999999999999988864 556666667666779999999885432
Q ss_pred HHHHHhhhcCCCCccccCCCCCCCCCCC
Q 023704 230 RAAAAAAAVNPSTSYAASYGNPDPGFGG 257 (278)
Q Consensus 230 ~a~~~a~~~~~~~~y~~~~gn~~~~~~~ 257 (278)
|. -|+.+|+.+.+.|...|..
T Consensus 657 -av------~p~~~~~~~~~~~~~~~~~ 677 (697)
T PF09726_consen 657 -AV------MPSDSYCSAITPPTPHYSS 677 (697)
T ss_pred -hc------CCccccccCCCCCCccchh
Confidence 22 3566677555544445543
No 11
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.11 E-value=0.002 Score=69.25 Aligned_cols=101 Identities=20% Similarity=0.297 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHH
Q 023704 126 AELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE----SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQR 201 (278)
Q Consensus 126 ~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d----~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~ 201 (278)
.++..+..++..+......+..++..++.++.+++.+ .+++..++.+++.++.++..+...++...+...+.-.+.
T Consensus 392 ~~l~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l 471 (1164)
T TIGR02169 392 EKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQEL 471 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444433322 123344444444444444444444444443334444444
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhHH
Q 023704 202 EIMEKNIISVAQQIERLQAELANAE 226 (278)
Q Consensus 202 q~meknl~~m~~e~eklrael~n~~ 226 (278)
..+...+-.+..++.+++.++...+
T Consensus 472 ~~~~~~l~~l~~~l~~l~~~~~~l~ 496 (1164)
T TIGR02169 472 YDLKEEYDRVEKELSKLQRELAEAE 496 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555554443
No 12
>PRK11637 AmiB activator; Provisional
Probab=98.04 E-value=0.016 Score=56.82 Aligned_cols=73 Identities=14% Similarity=0.186 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhH
Q 023704 136 EKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNI 208 (278)
Q Consensus 136 ~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl 208 (278)
..+...+.+|..+.+.++.++.+.......+..-+++|+..+.+.+.....++-+++.....+.+++.-++.|
T Consensus 173 ~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L 245 (428)
T PRK11637 173 AELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRL 245 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433333334444444444444444444444444444444444444444443
No 13
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.77 E-value=0.007 Score=65.02 Aligned_cols=21 Identities=19% Similarity=0.466 Sum_probs=16.8
Q ss_pred Eeec--CC---CcccccCCccCCCCC
Q 023704 10 TTLH--NH---SQFTMSGRRVLREPP 30 (278)
Q Consensus 10 vtfh--p~---~svTleGD~ydpeG~ 30 (278)
++|+ |. ...|++||.-.-.|+
T Consensus 612 m~s~~~p~n~~~aytldg~~~~~~g~ 637 (1074)
T KOG0250|consen 612 MQSDKPPANVTKAYTLDGRQIFAGGP 637 (1074)
T ss_pred HhcCCCCccceeeeccCccccccCCC
Confidence 7888 66 899999998775666
No 14
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.77 E-value=0.012 Score=54.89 Aligned_cols=103 Identities=17% Similarity=0.320 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 71 THVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLN 150 (278)
Q Consensus 71 ~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq 150 (278)
.+..+..+|..+.+.|..+......+..+.+....++-+=-.|++.+......++.++..++.++......+.+|..+|+
T Consensus 48 ~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~ 127 (312)
T PF00038_consen 48 IKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQ 127 (312)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHH
Confidence 44455666666666666666666666666666666666667788888999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh-hccHHHHHHHH
Q 023704 151 EINGDLAKARDE-SKDMAAIKAEI 173 (278)
Q Consensus 151 ~LekDL~~~~~d-~~kl~~LkaEI 173 (278)
.|..||.-.... .+.+.+|+..+
T Consensus 128 ~L~eEl~fl~~~heeEi~~L~~~~ 151 (312)
T PF00038_consen 128 SLKEELEFLKQNHEEEIEELREQI 151 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTT-
T ss_pred HHHHHHHHHHhhhhhhhhhhhhcc
Confidence 999998866654 45455554433
No 15
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.67 E-value=0.047 Score=51.97 Aligned_cols=110 Identities=25% Similarity=0.360 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHH-HHHHHHHHHHHHHHhhhhhhhhhhhhchhh
Q 023704 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMA-AIKAEIETERQEIHKGRAAIECEKKNRASN 197 (278)
Q Consensus 119 r~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~-~LkaEIe~LrqEl~~~raa~e~ekk~~~e~ 197 (278)
+..+.|+.+...+...+..+.....++...-+.|+.++..++.-...+. .-..+|+.+|++|......|+.-|+.-.++
T Consensus 156 ~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el 235 (325)
T PF08317_consen 156 ENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAEL 235 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777777777777777777777777777777776665432222 335677888888888888888888888888
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhHHhh
Q 023704 198 HEQREIMEKNIISVAQQIERLQAELANAEKR 228 (278)
Q Consensus 198 ~eq~q~meknl~~m~~e~eklrael~n~~~r 228 (278)
-.+++..+..+-.+..+..+|+++|+++++.
T Consensus 236 ~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~ 266 (325)
T PF08317_consen 236 QEELEELEEKIEELEEQKQELLAEIAEAEKI 266 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999998844
No 16
>PRK11637 AmiB activator; Provisional
Probab=97.66 E-value=0.072 Score=52.32 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHH----HHHhHHHHHHHHHHHHHHHH
Q 023704 170 KAEIETERQEIHKGRAAIECEKKNRASNHEQREI----MEKNIISVAQQIERLQAELA 223 (278)
Q Consensus 170 kaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~----meknl~~m~~e~eklrael~ 223 (278)
+++++.+..++......++-+++.+...+.+++. -+.-+..+.++..+|.+.|+
T Consensus 193 ~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~ 250 (428)
T PRK11637 193 QSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIA 250 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444443333333322 22334444445555555544
No 17
>PRK09039 hypothetical protein; Validated
Probab=97.63 E-value=0.005 Score=59.16 Aligned_cols=81 Identities=12% Similarity=0.229 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhh----hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHH----HH
Q 023704 142 KQEMIKDLNEINGDLAKARDE----SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISV----AQ 213 (278)
Q Consensus 142 rqeL~~evq~LekDL~~~~~d----~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m----~~ 213 (278)
..++..++..+..+|...+.. ..++..|+.+|+.||.++..+.++++.-+....+.-.+...+++.|-.. ..
T Consensus 111 ~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~ 190 (343)
T PRK09039 111 GAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQ 190 (343)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566666677777665543 5678999999999999999999999999999999999999999888766 44
Q ss_pred HHHHHHHHH
Q 023704 214 QIERLQAEL 222 (278)
Q Consensus 214 e~eklrael 222 (278)
|++++|.++
T Consensus 191 ~l~~~~~~~ 199 (343)
T PRK09039 191 ELNRYRSEF 199 (343)
T ss_pred HHHHhHHHH
Confidence 778888777
No 18
>PRK03918 chromosome segregation protein; Provisional
Probab=97.61 E-value=0.037 Score=58.47 Aligned_cols=97 Identities=21% Similarity=0.276 Sum_probs=56.9
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhccHHHHHHHHHHHHHHHHhhhh
Q 023704 108 YEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR--DESKDMAAIKAEIETERQEIHKGRA 185 (278)
Q Consensus 108 ~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~--~d~~kl~~LkaEIe~LrqEl~~~ra 185 (278)
+++..+++......+.+..++..++.++..+.....++..++..+...+.+.. -+...+..++.+++.++.++..++.
T Consensus 601 ~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~l~~ 680 (880)
T PRK03918 601 YNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRA 680 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666667777777777777777777777777777777777777777665 2234444455555555444444444
Q ss_pred hhhhhhhhchhhHHHHHHH
Q 023704 186 AIECEKKNRASNHEQREIM 204 (278)
Q Consensus 186 a~e~ekk~~~e~~eq~q~m 204 (278)
.++..++.--++.++.+..
T Consensus 681 ~~~~l~~~i~~l~~~i~~~ 699 (880)
T PRK03918 681 ELEELEKRREEIKKTLEKL 699 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444443333333333333
No 19
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.61 E-value=0.0092 Score=56.77 Aligned_cols=33 Identities=12% Similarity=0.287 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHh
Q 023704 67 RLAATHVALKQELSLAEQELRHLSSVAASVKAE 99 (278)
Q Consensus 67 rla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae 99 (278)
.|...+..|+++.......+..+......+...
T Consensus 153 ~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~ 185 (325)
T PF08317_consen 153 GLEENLELLQEDYAKLDKQLEQLDELLPKLRER 185 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555444433
No 20
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.55 E-value=0.037 Score=59.67 Aligned_cols=102 Identities=15% Similarity=0.272 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhh
Q 023704 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASN 197 (278)
Q Consensus 119 r~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~ 197 (278)
+....++.++..+...++++......|..+|..+.++. ..+ .++++++..+++.|++++.+++..+.-.+....+.
T Consensus 351 re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~---~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~ 427 (1074)
T KOG0250|consen 351 REVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT---NNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEV 427 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555555555555444444 112 45566666666666666666666666555555666
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH
Q 023704 198 HEQREIMEKNIISVAQQIERLQAELA 223 (278)
Q Consensus 198 ~eq~q~meknl~~m~~e~eklrael~ 223 (278)
.+-...++.++-+.-.++-.||--+.
T Consensus 428 ~~~~~~~~ee~~~i~~~i~~l~k~i~ 453 (1074)
T KOG0250|consen 428 KEKAKEEEEEKEHIEGEILQLRKKIE 453 (1074)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 66666666666444444444444433
No 21
>PRK02224 chromosome segregation protein; Provisional
Probab=97.51 E-value=0.062 Score=57.02 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 023704 72 HVALKQELSLAEQELRHLSSVAAS 95 (278)
Q Consensus 72 ~~~L~qEL~laqhEL~~l~~~i~~ 95 (278)
...+++++.....++..+...+..
T Consensus 208 l~~~~~~l~el~~~i~~~~~~~~~ 231 (880)
T PRK02224 208 LNGLESELAELDEEIERYEEQREQ 231 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 22
>PRK03918 chromosome segregation protein; Provisional
Probab=97.49 E-value=0.076 Score=56.14 Aligned_cols=64 Identities=17% Similarity=0.387 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Q 023704 113 KLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETE 176 (278)
Q Consensus 113 kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~L 176 (278)
.++.++...+..+.++..+..+++.+......+..++..+++++.++.....++..+..+++.+
T Consensus 225 ~~~~~l~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~~~~~~l 288 (880)
T PRK03918 225 KLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKEL 288 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555555555555555555554444444444444433333
No 23
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.44 E-value=0.04 Score=55.80 Aligned_cols=116 Identities=22% Similarity=0.321 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 70 ATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDL 149 (278)
Q Consensus 70 ~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~ev 149 (278)
.....|+.+|..+..++..|+..+....... +.... +...+....-..+..++.||.+++..+++.......|...+
T Consensus 235 ~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~-l~~~~--~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~v 311 (522)
T PF05701_consen 235 EAAKDLESKLAEASAELESLQAELEAAKESK-LEEEA--EAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASV 311 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhH--HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555444311 00000 00001111112256666677777777776666666666666
Q ss_pred HHHHHHHHHHhhh-----------hccHHHHHHHHHHHHHHHHhhhhhhh
Q 023704 150 NEINGDLAKARDE-----------SKDMAAIKAEIETERQEIHKGRAAIE 188 (278)
Q Consensus 150 q~LekDL~~~~~d-----------~~kl~~LkaEIe~LrqEl~~~raa~e 188 (278)
.+|..||.+.+.+ ...+..|..++..++.+|.-++....
T Consensus 312 esL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~ 361 (522)
T PF05701_consen 312 ESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEE 361 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 6666666665544 22345556666666666655444443
No 24
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.38 E-value=0.046 Score=60.87 Aligned_cols=106 Identities=8% Similarity=0.119 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhh---hh-hhhhhhch
Q 023704 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRA---AI-ECEKKNRA 195 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~ra---a~-e~ekk~~~ 195 (278)
++.++.++.+++.+++++......|..++..+..+..++... ..+...+..++..++..+..+.. .| +|...+..
T Consensus 890 L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~ 969 (1311)
T TIGR00606 890 LVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKD 969 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 666667777777777777777777777777777777776666 66677777777766665554433 33 34544433
Q ss_pred hhHH-----------HHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023704 196 SNHE-----------QREIMEKNIISVAQQIERLQAELANAE 226 (278)
Q Consensus 196 e~~e-----------q~q~meknl~~m~~e~eklrael~n~~ 226 (278)
+.++ ++..++..+-.+..++..|+.+|.+..
T Consensus 970 ~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~ 1011 (1311)
T TIGR00606 970 DYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQK 1011 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332 233444444555555555555555554
No 25
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.33 E-value=0.033 Score=51.18 Aligned_cols=39 Identities=26% Similarity=0.333 Sum_probs=23.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023704 57 DIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAAS 95 (278)
Q Consensus 57 eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~ 95 (278)
.|+.+-....|+.......+.+|..++-++..++..+..
T Consensus 11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~ 49 (239)
T COG1579 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEA 49 (239)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666666666666666666666555543
No 26
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.31 E-value=0.13 Score=56.84 Aligned_cols=37 Identities=16% Similarity=0.409 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAK 158 (278)
Q Consensus 122 e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~ 158 (278)
+.++.++..+..++.........+..+++.++..+.+
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~ 415 (1163)
T COG1196 379 EALREELAELEAELAEIRNELEELKREIESLEERLER 415 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333444444443333333
No 27
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.30 E-value=0.1 Score=49.19 Aligned_cols=125 Identities=18% Similarity=0.245 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 81 LAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIE---SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLA 157 (278)
Q Consensus 81 laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e---~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~ 157 (278)
..+.+++.|.....+..-.- ..-+.+++++..|+.++.... ....++..+.+++..+.....++..+|+.|..+.+
T Consensus 111 ~ler~i~~Le~~~~T~~L~~-e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaq 189 (294)
T COG1340 111 SLEREIERLEKKQQTSVLTP-EEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQ 189 (294)
T ss_pred HHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555544444333322 122568888888888876554 45566777778888888888888888888888888
Q ss_pred HHhhh----hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHH
Q 023704 158 KARDE----SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEK 206 (278)
Q Consensus 158 ~~~~d----~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~mek 206 (278)
+++.+ -++..+++.+.+.|+.++...+..++..............-.++
T Consensus 190 e~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k 242 (294)
T COG1340 190 EYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEK 242 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 88766 47789999999999999999999999888877776666665554
No 28
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.29 E-value=0.16 Score=51.80 Aligned_cols=58 Identities=17% Similarity=0.288 Sum_probs=48.6
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHH----HHHHHHHH
Q 023704 164 KDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQ----QIERLQAE 221 (278)
Q Consensus 164 ~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~----e~eklrae 221 (278)
..+..|++|+..|+.+|.++|+.++-|.-.+.++.-+.|.+.+.|--|-+ ||.-+|.-
T Consensus 169 ~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~ 230 (546)
T KOG0977|consen 169 DELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRK 230 (546)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 34577888889999999999999999999999999999999999888874 66655543
No 29
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.25 E-value=0.13 Score=45.76 Aligned_cols=106 Identities=15% Similarity=0.191 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHH----HHHHHHHHHHHHHHhhhhhh-hhhh----
Q 023704 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMA----AIKAEIETERQEIHKGRAAI-ECEK---- 191 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~----~LkaEIe~LrqEl~~~raa~-e~ek---- 191 (278)
++.+|..+..+..+-..|.+....+..+.+.|..+|..++..+.|+. -|+..++.|..+-..+...+ +||.
T Consensus 69 ledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~ 148 (193)
T PF14662_consen 69 LEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQ 148 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555556666666666655544432 22222222222222222222 4443
Q ss_pred --hhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023704 192 --KNRASNHEQREIMEKNIISVAQQIERLQAELANAE 226 (278)
Q Consensus 192 --k~~~e~~eq~q~meknl~~m~~e~eklrael~n~~ 226 (278)
..-.+..-+.....+-+.....=.+-||+|+...+
T Consensus 149 ~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LE 185 (193)
T PF14662_consen 149 RDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLE 185 (193)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22234455556666666666666777777776554
No 30
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.23 E-value=0.13 Score=47.90 Aligned_cols=118 Identities=25% Similarity=0.423 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHH
Q 023704 46 HLEDRIAIQHSDIQSLLQDNQRLAATHVALKQEL--------SLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAE 117 (278)
Q Consensus 46 ~Le~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL--------~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleae 117 (278)
.|.++|+..-..++.+=.+|..|-.....++..- .....+|.-+...+..+..++ .+|+.+
T Consensus 8 ~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~ek-----------a~l~~e 76 (312)
T PF00038_consen 8 SLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEK-----------ARLELE 76 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHH-----------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHh-----------hHHhhh
Confidence 5667777776677777777777777776666552 122333444444444333333 455666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---h-hccHHHHHHHHHHHH
Q 023704 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARD---E-SKDMAAIKAEIETER 177 (278)
Q Consensus 118 lr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~---d-~~kl~~LkaEIe~Lr 177 (278)
++.++.++..++..+......++.+..++..+.+++..... + ..++..|+.||+-++
T Consensus 77 ---~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 77 ---IDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLK 137 (312)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 77788888888888888888888888888888888776442 2 344455555444443
No 31
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.20 E-value=0.37 Score=51.59 Aligned_cols=183 Identities=13% Similarity=0.210 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHH----------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhh
Q 023704 44 LHHLEDRIAIQHS----------DIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLK 113 (278)
Q Consensus 44 ~~~Le~~L~~q~~----------eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~k 113 (278)
+.-|.++|+.... |+.+---+++.+-.=...+.+.....+.+|.+...........+|...+++.|-.--
T Consensus 233 vrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~ 312 (1243)
T KOG0971|consen 233 VRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADA 312 (1243)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777766554 222222223322222223333334444444444444444455556666666555444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----ccHHHHHHHHHHHHHHHHhhhhhhh
Q 023704 114 LDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDES-----KDMAAIKAEIETERQEIHKGRAAIE 188 (278)
Q Consensus 114 leaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~-----~kl~~LkaEIe~LrqEl~~~raa~e 188 (278)
||.--=.-|-.+...+.|+.|+..++....+|+.++.-|..||.+-.+|+ -+++.|+..-..||.-+.|+|----
T Consensus 313 iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA 392 (1243)
T KOG0971|consen 313 IEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSA 392 (1243)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 44321111222334455788888888899999999999999999977774 3567788888889999999988888
Q ss_pred hhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023704 189 CEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAE 226 (278)
Q Consensus 189 ~ekk~~~e~~eq~q~meknl~~m~~e~eklrael~n~~ 226 (278)
.||--+......+...-.-+--+-|--|+|..++.++|
T Consensus 393 ~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aE 430 (1243)
T KOG0971|consen 393 SEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAE 430 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 88766666555444433344445556667777777766
No 32
>PRK02224 chromosome segregation protein; Provisional
Probab=97.18 E-value=0.14 Score=54.35 Aligned_cols=27 Identities=15% Similarity=0.190 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023704 67 RLAATHVALKQELSLAEQELRHLSSVA 93 (278)
Q Consensus 67 rla~~~~~L~qEL~laqhEL~~l~~~i 93 (278)
.+-.....++.++...+.++..+...+
T Consensus 210 ~~~~~l~el~~~i~~~~~~~~~l~~~l 236 (880)
T PRK02224 210 GLESELAELDEEIERYEEQREQARETR 236 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443333
No 33
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.16 E-value=0.17 Score=51.46 Aligned_cols=158 Identities=20% Similarity=0.292 Sum_probs=81.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhh--------HH--HH------------
Q 023704 61 LLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKL--------DA--EL------------ 118 (278)
Q Consensus 61 ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kl--------ea--el------------ 118 (278)
+..++..+-.....++..|++.+++...|..-+.++.+-+|.-|.+|+.-.+.. ++ ++
T Consensus 281 ~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qEk~ 360 (546)
T PF07888_consen 281 LQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQEKQ 360 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555566666666666666666666666655555554332211 00 11
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccHHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Q 023704 119 ---RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDES-KDMAAIKAEIETERQEIHKGRAAIECEKKNR 194 (278)
Q Consensus 119 ---r~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~-~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~ 194 (278)
...+..+.+|.+|..+++.+....++=..+-+.|+++|.+.+.-+ -+|.+.+.+|..|+..+.-+-.. .
T Consensus 361 ~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkE-------K 433 (546)
T PF07888_consen 361 ALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKE-------K 433 (546)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence 123444455556666666666555555666666666666544113 24555555555555544433322 2
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHhhHHHH
Q 023704 195 ASNHEQREIMEKNIISVAQQIERLQAELANAEKRARAA 232 (278)
Q Consensus 195 ~e~~eq~q~meknl~~m~~e~eklrael~n~~~r~~a~ 232 (278)
-.+.+..|. +.+.|++|+..|....---|..
T Consensus 434 Eql~~EkQe-------L~~yi~~Le~r~~~~~~~~~~~ 464 (546)
T PF07888_consen 434 EQLQEEKQE-------LLEYIERLEQRLDKVADEKWKE 464 (546)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHhhhhhhhc
Confidence 223333333 4566777777775554334443
No 34
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.15 E-value=0.22 Score=49.94 Aligned_cols=15 Identities=33% Similarity=0.434 Sum_probs=6.7
Q ss_pred HHHHHHHHhhhhHHH
Q 023704 103 EVRELYEKSLKLDAE 117 (278)
Q Consensus 103 ~~r~l~~k~~kleae 117 (278)
++.++..+...++.+
T Consensus 221 e~~~l~~~~~~l~~~ 235 (562)
T PHA02562 221 KYDELVEEAKTIKAE 235 (562)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 35
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=97.11 E-value=0.12 Score=46.42 Aligned_cols=57 Identities=23% Similarity=0.450 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHH-------hhhhhhhhhhhhchhhHHHH----HHHHHhHHHHHHHHHHHHHHH
Q 023704 166 MAAIKAEIETERQEIH-------KGRAAIECEKKNRASNHEQR----EIMEKNIISVAQQIERLQAEL 222 (278)
Q Consensus 166 l~~LkaEIe~LrqEl~-------~~raa~e~ekk~~~e~~eq~----q~meknl~~m~~e~eklrael 222 (278)
+..|+.+++.|+.||. ..+..|+.|+..-.+--+.+ +-+-.|+|-|-+--..|-.+|
T Consensus 133 ~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~l 200 (202)
T PF06818_consen 133 LGSLRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQALEREL 200 (202)
T ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556667777766666 45568999988876665544 556789999987555554443
No 36
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.08 E-value=0.27 Score=54.99 Aligned_cols=57 Identities=21% Similarity=0.263 Sum_probs=42.0
Q ss_pred HHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHhhHHHHH
Q 023704 175 TERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKRARAAA 233 (278)
Q Consensus 175 ~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael~n~~~r~~a~~ 233 (278)
.++++..+++..+..-...++.+..+++.++..+-.+-.|++. .+..|+++|.+-+.
T Consensus 1051 ~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e--~~yk~a~~ryrka~ 1107 (1311)
T TIGR00606 1051 QMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE--PQFRDAEEKYREMM 1107 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--hHHHHHHHHHHHHH
Confidence 4445555555555566677888889999999999999999855 67788887766554
No 37
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.06 E-value=0.1 Score=53.24 Aligned_cols=154 Identities=12% Similarity=0.217 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhH-HHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 75 LKQELSLAEQELRHLSSVAASVKAER-DAEVRELYEKSLK----LDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDL 149 (278)
Q Consensus 75 L~qEL~laqhEL~~l~~~i~~~~ae~-e~~~r~l~~k~~k----leaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~ev 149 (278)
+..+|...+..|......+.+..-+. +..+..+-+++-. ||.+..+...+......+...+..+....++|..++
T Consensus 254 i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei 333 (569)
T PRK04778 254 IEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEI 333 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444444444332 2222223333322 355556666666666666666666666666777777
Q ss_pred HHHHHH-------HHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 023704 150 NEINGD-------LAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAEL 222 (278)
Q Consensus 150 q~LekD-------L~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael 222 (278)
..+.+. +..++.=..++..+...++.+...+......|..-++...++.+++..+++....+...+..||.+.
T Consensus 334 ~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E 413 (569)
T PRK04778 334 DRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDE 413 (569)
T ss_pred HHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666554 3333333455666666666677777777777777778888888888899999999999999999888
Q ss_pred HhHHhh
Q 023704 223 ANAEKR 228 (278)
Q Consensus 223 ~n~~~r 228 (278)
..|.++
T Consensus 414 ~eAr~k 419 (569)
T PRK04778 414 LEAREK 419 (569)
T ss_pred HHHHHH
Confidence 777643
No 38
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=97.06 E-value=0.099 Score=49.80 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=11.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 63 QDNQRLAATHVALKQELSLAEQELRHLSSV 92 (278)
Q Consensus 63 ~dnqrla~~~~~L~qEL~laqhEL~~l~~~ 92 (278)
.+.+.+-.-.-.|++..+..++++..|.+.
T Consensus 165 ~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~ 194 (312)
T smart00787 165 KELELLNSIKPKLRDRKDALEEELRQLKQL 194 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333444444444444444333
No 39
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.98 E-value=0.46 Score=54.83 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=11.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhH
Q 023704 203 IMEKNIISVAQQIERLQAELANA 225 (278)
Q Consensus 203 ~meknl~~m~~e~eklrael~n~ 225 (278)
-+|+..-.+++|++.|+.+|...
T Consensus 1122 K~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1122 KAERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555444
No 40
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.96 E-value=0.44 Score=50.60 Aligned_cols=168 Identities=20% Similarity=0.329 Sum_probs=87.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---HhHHHHHHHHHHHhh-------------hhHHHHHHH
Q 023704 58 IQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVK---AERDAEVRELYEKSL-------------KLDAELRVI 121 (278)
Q Consensus 58 Iq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~---ae~e~~~r~l~~k~~-------------kleaelr~~ 121 (278)
|..+-.+-.++......|+..+.....++..|...|.++. .++|-++.++-++.. +||--+...
T Consensus 366 ~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~ek 445 (775)
T PF10174_consen 366 IEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREK 445 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHH
Confidence 3333344445555556666667777777777777765544 355666666665555 222222112
Q ss_pred HHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------hh----hccHHHHHHHHHH
Q 023704 122 ESMHAELDR--------VRADIEKLCVIKQEMIKDLNEINGDLAKAR--------------DE----SKDMAAIKAEIET 175 (278)
Q Consensus 122 e~lk~El~q--------lr~ei~~l~~~rqeL~~evq~LekDL~~~~--------------~d----~~kl~~LkaEIe~ 175 (278)
+-+...|.. ...++.......+++..++..|+++|.+.. +. .+.|.-|.-+++.
T Consensus 446 er~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk 525 (775)
T PF10174_consen 446 ERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEK 525 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHH
Confidence 111111111 123344444445555555555555555543 22 3445555566666
Q ss_pred HHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHH-------HHHHHHHHHHhHH
Q 023704 176 ERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQ-------QIERLQAELANAE 226 (278)
Q Consensus 176 LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~-------e~eklrael~n~~ 226 (278)
.+.++.++.+.++-. ..+++.....+.+|+-...... |||+|+.-|-+++
T Consensus 526 ~rek~~kl~~ql~k~-~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E 582 (775)
T PF10174_consen 526 KREKHEKLEKQLEKL-RANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAE 582 (775)
T ss_pred hhhHHHHHHHHHHHH-HhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666555541 2224555555566665444432 8888888777776
No 41
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.87 E-value=0.32 Score=56.05 Aligned_cols=104 Identities=21% Similarity=0.349 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHH
Q 023704 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE----SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQRE 202 (278)
Q Consensus 127 El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d----~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q 202 (278)
.|..+...+++-...+.++......++.++..++.. ..+...|..++....-|+.++.+.++.|+..-..+..+++
T Consensus 1021 ~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~ 1100 (1930)
T KOG0161|consen 1021 QLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIK 1100 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 333344444444444455554444555555333322 2344555555556666666666667777666666666666
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhHHhhHH
Q 023704 203 IMEKNIISVAQQIERLQAELANAEKRAR 230 (278)
Q Consensus 203 ~meknl~~m~~e~eklrael~n~~~r~~ 230 (278)
-++.-+.-...++|..|+-.+.+++.-|
T Consensus 1101 eL~~~i~el~e~le~er~~r~K~ek~r~ 1128 (1930)
T KOG0161|consen 1101 ELEARIKELEEELEAERASRAKAERQRR 1128 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666677777777766665443
No 42
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=96.87 E-value=0.27 Score=42.83 Aligned_cols=61 Identities=15% Similarity=0.375 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHh
Q 023704 122 ESMHAELDRVRADIE-KLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHK 182 (278)
Q Consensus 122 e~lk~El~qlr~ei~-~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~ 182 (278)
..++.|+.+++++++ .+.-.+.+...+...++..+.+.+.. ...+..|+.+|+++|-++-+
T Consensus 94 ~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~lr 156 (177)
T PF07798_consen 94 QELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIESLKWDTLR 156 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666665 23344556667777777777777766 66677777777777766544
No 43
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.095 Score=55.07 Aligned_cols=124 Identities=21% Similarity=0.288 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 68 LAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIK 147 (278)
Q Consensus 68 la~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~ 147 (278)
+-+....|++||......++-|..++.+++...--+--+|-.-.-..|-.+-.+..+.++|..++.-+.+|.-++++|..
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~ 514 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNH 514 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 55667788899999999999998888887776522222221111122222333444444444444444444444444444
Q ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 023704 148 DLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEK 191 (278)
Q Consensus 148 evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ek 191 (278)
++.....-...-....+.|.++..+-+.+++.|...--.++-|+
T Consensus 515 qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~ 558 (1118)
T KOG1029|consen 515 QLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKET 558 (1118)
T ss_pred HHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443322211111123344444444555555554444444443
No 44
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.84 E-value=0.28 Score=45.12 Aligned_cols=81 Identities=17% Similarity=0.302 Sum_probs=40.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhh
Q 023704 105 RELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGR 184 (278)
Q Consensus 105 r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~r 184 (278)
+++=+|..+.+-.+.++... .++.+|..+++.+......|..++..+...+.+.. .++..++..+..+...+...+
T Consensus 69 ~~~r~r~~~~e~kl~~v~~~-~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~---~~i~~l~~~~~~~e~~~~e~~ 144 (239)
T COG1579 69 QEIRERIKRAEEKLSAVKDE-RELRALNIEIQIAKERINSLEDELAELMEEIEKLE---KEIEDLKERLERLEKNLAEAE 144 (239)
T ss_pred HHHHHHHHHHHHHHhccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555333333 25555666666666655555555555554444422 233444445555555555555
Q ss_pred hhhhh
Q 023704 185 AAIEC 189 (278)
Q Consensus 185 aa~e~ 189 (278)
..++.
T Consensus 145 ~~~e~ 149 (239)
T COG1579 145 ARLEE 149 (239)
T ss_pred HHHHH
Confidence 54443
No 45
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.79 E-value=0.34 Score=49.44 Aligned_cols=111 Identities=18% Similarity=0.229 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 77 QELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAEL----RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEI 152 (278)
Q Consensus 77 qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleael----r~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~L 152 (278)
+++..+..++.....++..++++... +--++.+||-|+ +.+.-+..+|..++..+..-...+.++..+++.|
T Consensus 134 k~~~~~re~~~~~~~~l~~leAe~~~----~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~L 209 (546)
T KOG0977|consen 134 KERRGAREKLDDYLSRLSELEAEINT----LKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTL 209 (546)
T ss_pred HHHhhhHHHHHHHhhhhhhhhhHHHH----HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33333344444444444444444322 333445555553 2234556666666666666667788888888888
Q ss_pred HHHHHHHhhh-hccHHHHHHHH-------------HHHHHHHHhhhhhhhhhh
Q 023704 153 NGDLAKARDE-SKDMAAIKAEI-------------ETERQEIHKGRAAIECEK 191 (278)
Q Consensus 153 ekDL~~~~~d-~~kl~~LkaEI-------------e~LrqEl~~~raa~e~ek 191 (278)
.++|.=+... .+-|.+++.-. ..|+..|...|+.||---
T Consensus 210 leel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~ 262 (546)
T KOG0977|consen 210 LEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAIS 262 (546)
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877666 55555554433 456667777777666443
No 46
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.76 E-value=0.64 Score=45.61 Aligned_cols=156 Identities=20% Similarity=0.247 Sum_probs=93.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 59 QSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKL 138 (278)
Q Consensus 59 q~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l 138 (278)
+.--.+.+..-.....+++++.-++++|.++..+..+.++.- .-|.+...++++++.+ +-++-.+|+..+..|
T Consensus 112 ~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl----~~l~~qr~ql~aq~qs---l~a~~k~LQ~s~~Ql 184 (499)
T COG4372 112 QKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRL----KTLAEQRRQLEAQAQS---LQASQKQLQASATQL 184 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 333344444555666777888888888888888777766653 3488888899999665 555555666667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHH-------HHHHHHhhhhhhhhhh---hhc----hhhHHHHHHH
Q 023704 139 CVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIET-------ERQEIHKGRAAIECEK---KNR----ASNHEQREIM 204 (278)
Q Consensus 139 ~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~-------LrqEl~~~raa~e~ek---k~~----~e~~eq~q~m 204 (278)
.....+|...-.+|+++-..+..-...+..+..|+-. +.++++..-+.|..-- .++ .+.-+++|..
T Consensus 185 k~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~l 264 (499)
T COG4372 185 KSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRL 264 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 7777777777777776665555443344444444322 3333333333322111 111 2334566777
Q ss_pred HHhHHHHHHHHHHHHHH
Q 023704 205 EKNIISVAQQIERLQAE 221 (278)
Q Consensus 205 eknl~~m~~e~eklrae 221 (278)
|.-...+-+||+.|.+=
T Consensus 265 Et~q~~leqeva~le~y 281 (499)
T COG4372 265 ETAQARLEQEVAQLEAY 281 (499)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777776543
No 47
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.74 E-value=0.38 Score=51.95 Aligned_cols=60 Identities=15% Similarity=0.416 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hccHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 023704 134 DIEKLCVIKQEMIKDLNEINGDLAKARDE----SKDMAAIKAEIETERQEIHKGRAAIECEKKN 193 (278)
Q Consensus 134 ei~~l~~~rqeL~~evq~LekDL~~~~~d----~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~ 193 (278)
+.+.+.....+|..++...++.|...... ..+++.|++.|.+...++..+.+.+..+|+.
T Consensus 816 e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k 879 (1174)
T KOG0933|consen 816 EYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAK 879 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Confidence 33333333444444444444433333222 3445555555555555566666666666544
No 48
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.74 E-value=0.38 Score=48.23 Aligned_cols=52 Identities=19% Similarity=0.173 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHH
Q 023704 167 AAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERL 218 (278)
Q Consensus 167 ~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~ekl 218 (278)
...+..|+.+..++..++..++.-.....+..+.++..+..|..+-.++..+
T Consensus 347 ~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 398 (562)
T PHA02562 347 STNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSEL 398 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444555555544445555555555555555544443333
No 49
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.74 E-value=0.56 Score=47.56 Aligned_cols=116 Identities=19% Similarity=0.276 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 023704 69 AATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVI------- 141 (278)
Q Consensus 69 a~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~------- 141 (278)
-..|...-.+|...++||..+...+.+.-.++..-....-+-...++...+.++.|..||..++..+......
T Consensus 122 ~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee 201 (522)
T PF05701_consen 122 REQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEE 201 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677888888888888888877666644444444445555666677777777777766666554322
Q ss_pred ------------------HHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhh
Q 023704 142 ------------------KQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRA 185 (278)
Q Consensus 142 ------------------rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~ra 185 (278)
..+...++..|..++.. ..+ ..++.....+|..|+.++.....
T Consensus 202 ~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~-~k~Le~kL~~a~~~l~~Lq~El~~~~~ 263 (522)
T PF05701_consen 202 RIEIAAEREQDAEEWEKELEEAEEELEELKEELEA-AKDLESKLAEASAELESLQAELEAAKE 263 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233334444444421 222 45555666666666666655554
No 50
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.74 E-value=0.83 Score=48.79 Aligned_cols=114 Identities=17% Similarity=0.238 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hccHHHHHHH
Q 023704 101 DAEVRELYEKSLKLDAE----LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE----SKDMAAIKAE 172 (278)
Q Consensus 101 e~~~r~l~~k~~kleae----lr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d----~~kl~~LkaE 172 (278)
+.++-.+-++..++..+ ++.++.+-+.+.-.+..+.++.....+|..++..+.....++... ...+..++.|
T Consensus 423 e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~E 502 (980)
T KOG0980|consen 423 ENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQE 502 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34444455555555444 466666666666666666677777777778888887777775432 5667888888
Q ss_pred HHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHH
Q 023704 173 IETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQ 214 (278)
Q Consensus 173 Ie~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e 214 (278)
+..+..++.++...+..---.++..+.|.-..+++=++.+.+
T Consensus 503 l~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~ 544 (980)
T KOG0980|consen 503 LALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAE 544 (980)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 888888888888887777777777888887777776665553
No 51
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.68 E-value=0.76 Score=45.48 Aligned_cols=45 Identities=20% Similarity=0.150 Sum_probs=20.3
Q ss_pred HHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 023704 176 ERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELA 223 (278)
Q Consensus 176 LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael~ 223 (278)
+++|-++..+.++-+..+....++.+++=+. ++..+|.+++++++
T Consensus 204 ~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~---~L~~~Ias~e~~aA 248 (420)
T COG4942 204 LLEERKKTLAQLNSELSADQKKLEELRANES---RLKNEIASAEAAAA 248 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHH
Confidence 3333344444444444444444444444332 34455666665555
No 52
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.67 E-value=0.62 Score=51.09 Aligned_cols=34 Identities=15% Similarity=0.322 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDL 156 (278)
Q Consensus 123 ~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL 156 (278)
.+++|+..++.++..+.....+..++++..+.+|
T Consensus 476 ~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel 509 (1293)
T KOG0996|consen 476 GIREEIEKLEKELMPLLKQVNEARSELDVAESEL 509 (1293)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444433
No 53
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.65 E-value=0.3 Score=40.55 Aligned_cols=76 Identities=17% Similarity=0.222 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHH
Q 023704 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHE 199 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~e 199 (278)
....-+.|..++.++..+.....+|..++......+...... ..+-..|..+|+.++. .|+....-|.=+..
T Consensus 54 Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~-------r~~dL~~QN~lLh~ 126 (132)
T PF07926_consen 54 HAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQ-------RIEDLNEQNKLLHD 126 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 333345777777777777777777777777777777665544 4444555555544444 44444445555555
Q ss_pred HHHH
Q 023704 200 QREI 203 (278)
Q Consensus 200 q~q~ 203 (278)
|++.
T Consensus 127 QlE~ 130 (132)
T PF07926_consen 127 QLES 130 (132)
T ss_pred HHhh
Confidence 5543
No 54
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.64 E-value=0.35 Score=41.03 Aligned_cols=36 Identities=25% Similarity=0.309 Sum_probs=17.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHh
Q 023704 64 DNQRLAATHVALKQELSLAEQELRHLSSVAASVKAE 99 (278)
Q Consensus 64 dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae 99 (278)
....+-+....|.++|...+.++..+.....+.+++
T Consensus 18 e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~e 53 (140)
T PF10473_consen 18 EKDSLEDHVESLERELEMSQENKECLILDAENSKAE 53 (140)
T ss_pred hHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 334444455555555555555555554444444443
No 55
>PRK09039 hypothetical protein; Validated
Probab=96.62 E-value=0.5 Score=45.47 Aligned_cols=40 Identities=18% Similarity=0.212 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023704 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~ 160 (278)
....+.+....+.++..|......|..++..|+..|...+
T Consensus 125 L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae 164 (343)
T PRK09039 125 LDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASE 164 (343)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455555555555555555555555544433
No 56
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.62 E-value=1.5 Score=48.79 Aligned_cols=125 Identities=18% Similarity=0.231 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 69 AATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELR-VIESMHAELDRVRADIEKLCVIKQEMIK 147 (278)
Q Consensus 69 a~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr-~~e~lk~El~qlr~ei~~l~~~rqeL~~ 147 (278)
..+...+.++|....+.|..............+.....+-....+++.+.. ....+..++..+.+++.........+..
T Consensus 255 ~~~l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~ 334 (1201)
T PF12128_consen 255 YRQLQALEQQLCHLHAELNADEQQLEQEQPELKEELNELNEELEKLEDEIKELRDELNKELSALNADLARIKSELDEIEQ 334 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443333333333333333333333221 1233333444444444444444444444
Q ss_pred HHHHHHH-HHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 023704 148 DLNEING-DLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKN 193 (278)
Q Consensus 148 evq~Lek-DL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~ 193 (278)
+-..-++ ||..+..+..++|.++.+++.++.++.-+.+.+..-...
T Consensus 335 ~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~k 381 (1201)
T PF12128_consen 335 QKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESK 381 (1201)
T ss_pred HHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333 455555666777777777777777777666665544433
No 57
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.54 E-value=0.25 Score=41.98 Aligned_cols=54 Identities=22% Similarity=0.350 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhH
Q 023704 47 LEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAER 100 (278)
Q Consensus 47 Le~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~ 100 (278)
|+..|.....+......++.-.-+....|+.+|.....+++.|..-+.+++.++
T Consensus 29 LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk 82 (140)
T PF10473_consen 29 LERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEK 82 (140)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443344444444444444444455555555555555554444444443
No 58
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.52 E-value=0.61 Score=42.38 Aligned_cols=107 Identities=21% Similarity=0.347 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--h--hccHHHHHHHHHHHHHHHHhhhhhhh------
Q 023704 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARD--E--SKDMAAIKAEIETERQEIHKGRAAIE------ 188 (278)
Q Consensus 119 r~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~--d--~~kl~~LkaEIe~LrqEl~~~raa~e------ 188 (278)
.+++.+...+..+...+........+...++..++.+|.+... + .+++..|..+|..+...+..+....+
T Consensus 92 eri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re 171 (237)
T PF00261_consen 92 ERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASERE 171 (237)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Confidence 3455555666666666666666666666666666666655432 2 46666666666666666665555443
Q ss_pred --hhhhhchhhHHH-------HHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023704 189 --CEKKNRASNHEQ-------REIMEKNIISVAQQIERLQAELANAE 226 (278)
Q Consensus 189 --~ekk~~~e~~eq-------~q~meknl~~m~~e~eklrael~n~~ 226 (278)
||.+. ..+.++ ....|++...+-++|++|..+|....
T Consensus 172 ~~~e~~i-~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k 217 (237)
T PF00261_consen 172 DEYEEKI-RDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEK 217 (237)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 111122 22345555555666666666665554
No 59
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.52 E-value=1.2 Score=50.59 Aligned_cols=106 Identities=9% Similarity=0.133 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hccHHHHHHHHHHHHHHHHhh---hhhh------
Q 023704 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE----SKDMAAIKAEIETERQEIHKG---RAAI------ 187 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d----~~kl~~LkaEIe~LrqEl~~~---raa~------ 187 (278)
.+.+..++......+.++.....++..++..++.++..++.. .+.+..++.++..+++.+.++ +.-|
T Consensus 357 LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~S 436 (1486)
T PRK04863 357 LEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLT 436 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 344444444444444444444444444444444444444322 233444444444444444333 3333
Q ss_pred -hhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023704 188 -ECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAE 226 (278)
Q Consensus 188 -e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael~n~~ 226 (278)
+.-+......-++++.++..+-.+-+++.++.+++...+
T Consensus 437 dEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~ 476 (1486)
T PRK04863 437 ADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFE 476 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333333344555555555555555555555554444
No 60
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.52 E-value=1.1 Score=48.55 Aligned_cols=89 Identities=17% Similarity=0.241 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHH
Q 023704 131 VRADIEKLCVIKQEMIKDLNEINGDLAKARDE----SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEK 206 (278)
Q Consensus 131 lr~ei~~l~~~rqeL~~evq~LekDL~~~~~d----~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~mek 206 (278)
+|++|.++.....+.......|.+|+.++.++ ..++.+|...|+..+-.+...-+.+-..|...-+++..++.
T Consensus 395 ir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~--- 471 (1200)
T KOG0964|consen 395 IRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKE--- 471 (1200)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 45556666666666666666666666665554 44567777777777777777777777777777777777776
Q ss_pred hHHHHHHHHHHHHHHHHhHH
Q 023704 207 NIISVAQQIERLQAELANAE 226 (278)
Q Consensus 207 nl~~m~~e~eklrael~n~~ 226 (278)
..||=-+||..|+|.+
T Consensus 472 ----lWREE~~l~~~i~~~~ 487 (1200)
T KOG0964|consen 472 ----LWREEKKLRSLIANLE 487 (1200)
T ss_pred ----HHHHHHHHHHHHHHHH
Confidence 5555555555555443
No 61
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.51 E-value=0.51 Score=48.13 Aligned_cols=146 Identities=18% Similarity=0.239 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 73 VALKQELSLAEQELRH-LSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNE 151 (278)
Q Consensus 73 ~~L~qEL~laqhEL~~-l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~ 151 (278)
..+-+||...-.+.-. ....+.+.+. .-|+|++++.-.|++=.+.+.+++....++.|+.+..+....+..+-+.
T Consensus 216 ~~~~~Elk~~l~~~~~~i~~~ie~l~~----~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~ 291 (581)
T KOG0995|consen 216 SELEDELKHRLEKYFTSIANEIEDLKK----TNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQH 291 (581)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHH
Confidence 3444454433333222 3344444433 3467888877667777778888888888999999999999999999999
Q ss_pred HHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHH----HHHHHhHHHHHHHHHHHHHHHHhHH
Q 023704 152 INGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQR----EIMEKNIISVAQQIERLQAELANAE 226 (278)
Q Consensus 152 LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~----q~meknl~~m~~e~eklrael~n~~ 226 (278)
+++.|...+.+ +.+-..|++.++++...++..|+.- +-..+-+++| +..++++..|..++++|+-++=+.+
T Consensus 292 ~~~~l~~l~~E---ie~kEeE~e~lq~~~d~Lk~~Ie~Q-~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~ 366 (581)
T KOG0995|consen 292 MEKKLEMLKSE---IEEKEEEIEKLQKENDELKKQIELQ-GISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELK 366 (581)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999887766 3344455666666666666666543 3444444443 5677788888888888887776555
No 62
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.50 E-value=0.6 Score=49.24 Aligned_cols=62 Identities=21% Similarity=0.362 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhh----hhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHh
Q 023704 166 MAAIKAEIETERQEIHKGRAAIECEK----KNRASNHEQREIMEKNIISVAQQIERLQAELANAEK 227 (278)
Q Consensus 166 l~~LkaEIe~LrqEl~~~raa~e~ek----k~~~e~~eq~q~meknl~~m~~e~eklrael~n~~~ 227 (278)
+..|+.-|+.++..+.+.+..++..+ +...=--.|++.+...|-.++.+|..|.-++-+-.+
T Consensus 648 l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~ 713 (717)
T PF10168_consen 648 LQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIKK 713 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666665555554222 222223468999999999999999999998876654
No 63
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.50 E-value=0.35 Score=46.26 Aligned_cols=27 Identities=4% Similarity=0.140 Sum_probs=16.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023704 200 QREIMEKNIISVAQQIERLQAELANAE 226 (278)
Q Consensus 200 q~q~meknl~~m~~e~eklrael~n~~ 226 (278)
+....+..+..+..+++.++..+.+..
T Consensus 247 ~l~~~~~~l~~~~~~l~~~~~~l~~~~ 273 (423)
T TIGR01843 247 ELTEAQARLAELRERLNKARDRLQRLI 273 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcE
Confidence 445555556666666677777775544
No 64
>PF13514 AAA_27: AAA domain
Probab=96.44 E-value=1.6 Score=48.01 Aligned_cols=132 Identities=21% Similarity=0.301 Sum_probs=72.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHH-----HHHHHHHHHhhhhHHHHHH-----------
Q 023704 57 DIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERD-----AEVRELYEKSLKLDAELRV----------- 120 (278)
Q Consensus 57 eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e-----~~~r~l~~k~~kleaelr~----------- 120 (278)
++++.+.+......++..+++++..+++++..+...+.....+.. .....++.....+++++..
T Consensus 161 e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~~~~~~~l~~~l~~l~~~~~~p~~~ 240 (1111)
T PF13514_consen 161 ELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRAWPLLAELQQLEAELAELGEVPDFPEDG 240 (1111)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCcCCCChhH
Confidence 445555555666677777777777777777777777776666642 2233345555555555432
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHH
Q 023704 121 ----------IESMHAELDRVRADIEKLCVIKQ---------EMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIH 181 (278)
Q Consensus 121 ----------~e~lk~El~qlr~ei~~l~~~rq---------eL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~ 181 (278)
......++..++.++..+..... .....|..|......+......++.+..++..++.++.
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L~~~~~~~~~~~~dl~~~~~e~~~~~~~~~ 320 (1111)
T PF13514_consen 241 AERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEELLAHAAEIEALEEQRGEYRKARQDLPRLEAELAELEAELR 320 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222233333333333332222 12333444455555555556667777778877777777
Q ss_pred hhhhhhh
Q 023704 182 KGRAAIE 188 (278)
Q Consensus 182 ~~raa~e 188 (278)
.+...+.
T Consensus 321 ~~~~~lg 327 (1111)
T PF13514_consen 321 ALLAQLG 327 (1111)
T ss_pred HHHHhcC
Confidence 7766665
No 65
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.42 E-value=0.48 Score=48.41 Aligned_cols=158 Identities=15% Similarity=0.234 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHhH-HHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 74 ALKQELSLAEQELRHLSSVAASVKAER-DAEVRELYEKSL----KLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKD 148 (278)
Q Consensus 74 ~L~qEL~laqhEL~~l~~~i~~~~ae~-e~~~r~l~~k~~----kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~e 148 (278)
.+..+|...+..|..+...+....-+. +..+..+.+++- .||.|+.+...+.+.+..+...+..+...-+.|..+
T Consensus 249 ~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e 328 (560)
T PF06160_consen 249 DIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEE 328 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554443332 122222222222 347777777888888888888888888777778777
Q ss_pred HHHHHHHHHHHhh-hhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHH-
Q 023704 149 LNEINGDLAKARD-ESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAE- 226 (278)
Q Consensus 149 vq~LekDL~~~~~-d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael~n~~- 226 (278)
+..+.+-- .+.. +......+..+|+.+...+......++..+..+.+..+.++.+.++|..+-.+...+...|.+..
T Consensus 329 ~~~v~~sY-~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~ 407 (560)
T PF06160_consen 329 LERVSQSY-TLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRK 407 (560)
T ss_pred HHHHHHhc-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777654 3333 37788889999999999999999999999999999988888888888888777777776666653
Q ss_pred --hhHHHH
Q 023704 227 --KRARAA 232 (278)
Q Consensus 227 --~r~~a~ 232 (278)
++||-.
T Consensus 408 dE~~Ar~~ 415 (560)
T PF06160_consen 408 DEKEAREK 415 (560)
T ss_pred HHHHHHHH
Confidence 445443
No 66
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.41 E-value=1.5 Score=48.82 Aligned_cols=65 Identities=26% Similarity=0.303 Sum_probs=36.5
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHH---HHHH-HHhHHHHHHHHHHHHHHHHhHHhhH
Q 023704 165 DMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQ---REIM-EKNIISVAQQIERLQAELANAEKRA 229 (278)
Q Consensus 165 kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq---~q~m-eknl~~m~~e~eklrael~n~~~r~ 229 (278)
...++...|+.+++++...+..++-+++..-..+.+ .+.. +.-+....++|+.|..+|...+.+.
T Consensus 726 ~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r 794 (1201)
T PF12128_consen 726 LEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERR 794 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 345555566666666666666666555443332221 0111 2245556678888888887777543
No 67
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.40 E-value=0.93 Score=43.15 Aligned_cols=163 Identities=21% Similarity=0.278 Sum_probs=94.1
Q ss_pred HH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhhHhHHH--------------HHHHHHHHhhhh
Q 023704 57 DI-QSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAA-------SVKAERDA--------------EVRELYEKSLKL 114 (278)
Q Consensus 57 eI-q~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~-------~~~ae~e~--------------~~r~l~~k~~kl 114 (278)
.| +.++..|+.|......|.++|..+...+..|++.+. -.....|. .......+...+
T Consensus 83 ~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~l 162 (306)
T PF04849_consen 83 RIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQL 162 (306)
T ss_pred HHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhH
Confidence 45 888888999988888888888777666666655443 11100000 000001122233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 023704 115 DAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKN 193 (278)
Q Consensus 115 eaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~ 193 (278)
++=-+++..++.|-.++|.++..|......+..+-+.|..|..+--++ ++++..|..||..-..+..+....|
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEI------ 236 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEI------ 236 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHH------
Confidence 444566666777777777777777777777777777777666554444 6666666666644444443333333
Q ss_pred chhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023704 194 RASNHEQREIMEKNIISVAQQIERLQAELANAE 226 (278)
Q Consensus 194 ~~e~~eq~q~meknl~~m~~e~eklrael~n~~ 226 (278)
..++.|+-.+++.+=..+.|-|+|+.-|..+.
T Consensus 237 -t~LlsqivdlQ~r~k~~~~EnEeL~q~L~~sk 268 (306)
T PF04849_consen 237 -TSLLSQIVDLQQRCKQLAAENEELQQHLQASK 268 (306)
T ss_pred -HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34455555555555556666666666655543
No 68
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.38 E-value=1.9 Score=49.62 Aligned_cols=87 Identities=11% Similarity=0.233 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHH
Q 023704 142 KQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQA 220 (278)
Q Consensus 142 rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklra 220 (278)
++.+..+|..|+.+|.++..+ .++...++.-...+...+..+...|+-+++.+...+..+...++|+-.|-.++.-|-.
T Consensus 800 k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k 879 (1822)
T KOG4674|consen 800 KDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEK 879 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444 3333444444444444444455555555555555555555555555555555555555
Q ss_pred HHHhHHhh
Q 023704 221 ELANAEKR 228 (278)
Q Consensus 221 el~n~~~r 228 (278)
.|...+.|
T Consensus 880 ~l~~~~~~ 887 (1822)
T KOG4674|consen 880 RLKSAKTQ 887 (1822)
T ss_pred HHHHhHHH
Confidence 55444433
No 69
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=96.34 E-value=0.9 Score=42.31 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhHH
Q 023704 212 AQQIERLQAELANAE 226 (278)
Q Consensus 212 ~~e~eklrael~n~~ 226 (278)
.-|.--||-||+--.
T Consensus 170 kdEardlrqelavr~ 184 (333)
T KOG1853|consen 170 KDEARDLRQELAVRT 184 (333)
T ss_pred HHHHHHHHHHHHHHH
Confidence 348888888887665
No 70
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=0.78 Score=46.71 Aligned_cols=154 Identities=19% Similarity=0.302 Sum_probs=92.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhH----------HHHHHHHHHHhhhhHHHHHHHH----
Q 023704 57 DIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAER----------DAEVRELYEKSLKLDAELRVIE---- 122 (278)
Q Consensus 57 eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~----------e~~~r~l~~k~~kleaelr~~e---- 122 (278)
+|...-.++++|......|+.+|.-+..-+--++....++.+.- |+-+-.--+++.|||++|....
T Consensus 332 eIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~d 411 (654)
T KOG4809|consen 332 EIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIED 411 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 78888899999999999999998888877777777777666653 3333334478889998874332
Q ss_pred ------HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 023704 123 ------SMHAELDRVRADIEK---LCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKK 192 (278)
Q Consensus 123 ------~lk~El~qlr~ei~~---l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~raa~e~ekk 192 (278)
.+-..|.++..++.. +...-+.+....=.|.++......| ..|+.+|.-.+..-....+.+-----.|||
T Consensus 412 dar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneKnDkdkkiaeler~~kdqnkkvaNlkHk~q~Ekk 491 (654)
T KOG4809|consen 412 DARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKHKQQLEKK 491 (654)
T ss_pred hhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhcCchhhhhhhHHhhHHHHHHHHHH
Confidence 222233333333333 3333333333344466667767777 778877765444333333333333344566
Q ss_pred hchhhHHHHHHHHHhHHH
Q 023704 193 NRASNHEQREIMEKNIIS 210 (278)
Q Consensus 193 ~~~e~~eq~q~meknl~~ 210 (278)
.++-.++....=|-++.+
T Consensus 492 k~aq~lee~rrred~~~d 509 (654)
T KOG4809|consen 492 KNAQLLEEVRRREDSMAD 509 (654)
T ss_pred HHHHHHHHHHHHHhhhcc
Confidence 666666555555555443
No 71
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=96.32 E-value=1.7 Score=45.37 Aligned_cols=165 Identities=15% Similarity=0.257 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 023704 51 IAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDR 130 (278)
Q Consensus 51 L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~q 130 (278)
+......-.+.+..-+.|-.+-..|+++|+..+.++..-...+..---.+|.-.|.+.--..+.+.. +..++..+..
T Consensus 522 i~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq---~k~lenk~~~ 598 (786)
T PF05483_consen 522 INNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQ---MKILENKCNN 598 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHH---HHHHHHHHHH
Confidence 3333333444555555566666667777777777776665554443334444444443333333333 4455556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHH
Q 023704 131 VRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIIS 210 (278)
Q Consensus 131 lr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~ 210 (278)
++..+........+|..+-..|.+.+.- +..|+..+.-.|..|+.|+..+..-++.+...+..-++.-.+-|-||.
T Consensus 599 LrKqvEnk~K~ieeLqqeNk~LKKk~~a---E~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L~- 674 (786)
T PF05483_consen 599 LRKQVENKNKNIEELQQENKALKKKITA---ESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEELL- 674 (786)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHH-
Confidence 6666666666666677777776666543 578888888888999999999999999998888888888888776654
Q ss_pred HHHHHHHHHHHHHh
Q 023704 211 VAQQIERLQAELAN 224 (278)
Q Consensus 211 m~~e~eklrael~n 224 (278)
-||+|+|.-..-
T Consensus 675 --~EveK~k~~a~E 686 (786)
T PF05483_consen 675 --GEVEKAKLTADE 686 (786)
T ss_pred --HHHHHHHHHHHH
Confidence 477777765443
No 72
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.31 E-value=1.1 Score=42.85 Aligned_cols=107 Identities=18% Similarity=0.291 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHH-HHHHHHHHHHHHHhhhhhhhhhhhhchhhHH
Q 023704 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAA-IKAEIETERQEIHKGRAAIECEKKNRASNHE 199 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~-LkaEIe~LrqEl~~~raa~e~ekk~~~e~~e 199 (278)
++.|+.+-..+...++.+....-+|....+.|+.++..++.-...+.. -..+++.+|.+|...-..++.-++.-.+.-+
T Consensus 153 ~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~ 232 (312)
T smart00787 153 LEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEE 232 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444443322111100 0223344444444444444444444445555
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHh
Q 023704 200 QREIMEKNIISVAQQIERLQAELANAEK 227 (278)
Q Consensus 200 q~q~meknl~~m~~e~eklrael~n~~~ 227 (278)
|++..+..+-....+...++.+|+.+++
T Consensus 233 ~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 233 ELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555553
No 73
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=96.29 E-value=0.086 Score=43.58 Aligned_cols=72 Identities=17% Similarity=0.338 Sum_probs=59.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhh
Q 023704 113 KLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAI 187 (278)
Q Consensus 113 kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~ 187 (278)
+|-+.|| .+..|+..++.++..+...|..+..+|-.++.+..++.+..++++.|+.+++.|.+.+..+---+
T Consensus 20 ~L~s~lr---~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~Lell 91 (120)
T PF12325_consen 20 RLQSQLR---RLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELL 91 (120)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455544 44578899999999999999999999999999999988888999999999999988777665444
No 74
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=96.25 E-value=1.4 Score=43.67 Aligned_cols=126 Identities=18% Similarity=0.220 Sum_probs=80.3
Q ss_pred hHhHHHHHHHHHHHhhhhHHH--HHHH--HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh----------
Q 023704 97 KAERDAEVRELYEKSLKLDAE--LRVI--ESMHAELDRVRADIEKLC-VIKQEMIKDLNEINGDLAKARD---------- 161 (278)
Q Consensus 97 ~ae~e~~~r~l~~k~~kleae--lr~~--e~lk~El~qlr~ei~~l~-~~rqeL~~evq~LekDL~~~~~---------- 161 (278)
..++|-++-.|+.|+.|+|++ ++.+ +.++.|..++..-+++-+ +....|-..+++|++|-.-++.
T Consensus 153 eqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~ 232 (552)
T KOG2129|consen 153 EQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPS 232 (552)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence 356677888899999999987 3444 667777766665554322 2244444455555544322221
Q ss_pred ---h--------hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHH-HHHHHHHHHHHH
Q 023704 162 ---E--------SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIIS-VAQQIERLQAEL 222 (278)
Q Consensus 162 ---d--------~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~-m~~e~eklrael 222 (278)
| +.--.+++.-|+.|+.|+.|+|+.+--=.|-+.+.+-|..+=|+++-. -.|+-+||.-|+
T Consensus 233 ~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~ 305 (552)
T KOG2129|consen 233 LPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINEL 305 (552)
T ss_pred chhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 1 122246677788888888888888887778888888777777766543 344555666665
No 75
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.25 E-value=2.1 Score=45.64 Aligned_cols=180 Identities=19% Similarity=0.293 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHH
Q 023704 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIES 123 (278)
Q Consensus 44 ~~~Le~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~ 123 (278)
+..++-+|..-..||..+-..++-+...+..+++.|++.+..|...+.+..-+.++.|.-.-.|=++..-++.-=..++.
T Consensus 289 ~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~ 368 (775)
T PF10174_consen 289 MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEK 368 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444457777888888888888888888888888888888888888887765555554444444333333444
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH-----------Hh--hhhccHHHHHHHHHHHHHHHHhh
Q 023704 124 MHAELDRVRADIEKLCV-------IKQEMIKDLNEINGDLAK-----------AR--DESKDMAAIKAEIETERQEIHKG 183 (278)
Q Consensus 124 lk~El~qlr~ei~~l~~-------~rqeL~~evq~LekDL~~-----------~~--~d~~kl~~LkaEIe~LrqEl~~~ 183 (278)
+..|...+..+|.++.. ....|..+|..|+..+.+ +. .|..+...+...|+..-.+..+.
T Consensus 369 ~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~ 448 (775)
T PF10174_consen 369 LQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERL 448 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHH
Confidence 44444443333333332 233333333333322221 11 22233334445555555666666
Q ss_pred hhhhhhhhhh-chhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 023704 184 RAAIECEKKN-RASNHEQREIMEKNIISVAQQIERLQAELA 223 (278)
Q Consensus 184 raa~e~ekk~-~~e~~eq~q~meknl~~m~~e~eklrael~ 223 (278)
+..++....- ..+..++...+.+-+-..-.+++.|..+|.
T Consensus 449 ~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLs 489 (775)
T PF10174_consen 449 QERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELS 489 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 6555533211 113345555555555555555555555553
No 76
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.23 E-value=0.91 Score=41.24 Aligned_cols=104 Identities=13% Similarity=0.237 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhch
Q 023704 120 VIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE----SKDMAAIKAEIETERQEIHKGRAAIECEKKNRA 195 (278)
Q Consensus 120 ~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d----~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~ 195 (278)
++..+..+|..+...+..+.....+|..++..+...|..+..- ..+...+...|..|...+..+...+++--.--.
T Consensus 121 kl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~ 200 (237)
T PF00261_consen 121 KLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVK 200 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555555555555555554422 455678888889999999988888887776666
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 023704 196 SNHEQREIMEKNIISVAQQIERLQAELA 223 (278)
Q Consensus 196 e~~eq~q~meknl~~m~~e~eklrael~ 223 (278)
.+-.+...+|..|...-....+++.||.
T Consensus 201 ~Le~~id~le~eL~~~k~~~~~~~~eld 228 (237)
T PF00261_consen 201 KLEKEIDRLEDELEKEKEKYKKVQEELD 228 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677777777777777777777774
No 77
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.21 E-value=0.4 Score=50.38 Aligned_cols=12 Identities=25% Similarity=0.282 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhH
Q 023704 214 QIERLQAELANA 225 (278)
Q Consensus 214 e~eklrael~n~ 225 (278)
|+|-|-..|+-+
T Consensus 588 ~~e~L~~aL~am 599 (697)
T PF09726_consen 588 DTEVLMSALSAM 599 (697)
T ss_pred hHHHHHHHHHHH
Confidence 566666666555
No 78
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.19 E-value=0.63 Score=53.23 Aligned_cols=134 Identities=16% Similarity=0.231 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHH
Q 023704 45 HHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESM 124 (278)
Q Consensus 45 ~~Le~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~l 124 (278)
-....+++....++..+=.++.-+..+-..|.+++.....+.+.++..+..+++-....-+...+.-.++|
T Consensus 734 ~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e--------- 804 (1822)
T KOG4674|consen 734 LSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCE--------- 804 (1822)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 35556666667788888888888888888899988888888888888888777777666666644444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhh
Q 023704 125 HAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIE 188 (278)
Q Consensus 125 k~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~raa~e 188 (278)
..|.++..+++.|....++...++..++.++..--.+ ..++..+..+++.+..++..++..|+
T Consensus 805 -~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~ 868 (1822)
T KOG4674|consen 805 -SRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIA 868 (1822)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444432223 34444444444444444444444443
No 79
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=96.17 E-value=1.5 Score=43.33 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=17.1
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhhh
Q 023704 165 DMAAIKAEIETERQEIHKGRAAIEC 189 (278)
Q Consensus 165 kl~~LkaEIe~LrqEl~~~raa~e~ 189 (278)
.+..++.+|..++.++..++..+.-
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~~~~~ 261 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQVQKAG 261 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566677777777777777776654
No 80
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.14 E-value=0.7 Score=39.15 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 131 VRADIEKLCVIKQEMIKDLNEINGDLAK 158 (278)
Q Consensus 131 lr~ei~~l~~~rqeL~~evq~LekDL~~ 158 (278)
+..+|..|....+.|..+|..++..|..
T Consensus 33 ~E~EI~sL~~K~~~lE~eld~~~~~l~~ 60 (143)
T PF12718_consen 33 KEQEITSLQKKNQQLEEELDKLEEQLKE 60 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 81
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.14 E-value=0.85 Score=40.62 Aligned_cols=70 Identities=17% Similarity=0.231 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhccHHHHHHHHHHHHHHHHhhhhhhh
Q 023704 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARD-ESKDMAAIKAEIETERQEIHKGRAAIE 188 (278)
Q Consensus 119 r~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~-d~~kl~~LkaEIe~LrqEl~~~raa~e 188 (278)
-..+.+..+|..+...++......+.|..++.-..+...+--. +..|..++..++..+..|+.++...+.
T Consensus 118 ~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 118 AEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355666666666666666666666666666666665555333 367777777777777777777766553
No 82
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=96.11 E-value=0.5 Score=41.02 Aligned_cols=33 Identities=27% Similarity=0.390 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHh
Q 023704 67 RLAATHVALKQELSLAEQELRHLSSVAASVKAE 99 (278)
Q Consensus 67 rla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae 99 (278)
++..+-..+++.|....+++..+...+.....+
T Consensus 78 ~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~ 110 (191)
T PF04156_consen 78 RLQGELSELQQQLQQLQEELDQLQERIQELESE 110 (191)
T ss_pred hhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555555555443333
No 83
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=96.09 E-value=0.11 Score=49.54 Aligned_cols=92 Identities=16% Similarity=0.311 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHH
Q 023704 125 HAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIM 204 (278)
Q Consensus 125 k~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~m 204 (278)
..++.++..+++.+.....++..++..++++-.++..+ +..|+.+.+.+.++-.+.-..+-.-+....+..+..+.+
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~e---l~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl 118 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQE---LEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSL 118 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555554443322 333444444443333322222222222233334444555
Q ss_pred HHhHHHHHHHHHHHH
Q 023704 205 EKNIISVAQQIERLQ 219 (278)
Q Consensus 205 eknl~~m~~e~eklr 219 (278)
+..+..+..++++||
T Consensus 119 ~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 119 KNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555554
No 84
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=96.04 E-value=0.29 Score=43.94 Aligned_cols=19 Identities=37% Similarity=0.585 Sum_probs=14.5
Q ss_pred HhHHHHHHHHHHHHHHHHh
Q 023704 206 KNIISVAQQIERLQAELAN 224 (278)
Q Consensus 206 knl~~m~~e~eklrael~n 224 (278)
..+-++-+|||.||+||.-
T Consensus 131 ~~~~~l~~e~erL~aeL~~ 149 (202)
T PF06818_consen 131 DELGSLRREVERLRAELQR 149 (202)
T ss_pred ccchhHHHHHHHHHHHHHH
Confidence 4466777888888888874
No 85
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.04 E-value=3.1 Score=47.00 Aligned_cols=18 Identities=22% Similarity=0.497 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023704 44 LHHLEDRIAIQHSDIQSL 61 (278)
Q Consensus 44 ~~~Le~~L~~q~~eIq~l 61 (278)
...|+.+|+....+|..+
T Consensus 744 i~el~~~IaeL~~~i~~l 761 (1353)
T TIGR02680 744 IAELDARLAAVDDELAEL 761 (1353)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555543333
No 86
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.00 E-value=2.1 Score=47.35 Aligned_cols=64 Identities=19% Similarity=0.253 Sum_probs=37.9
Q ss_pred hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023704 163 SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAE 226 (278)
Q Consensus 163 ~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael~n~~ 226 (278)
..++..|+..-..+.++...++...+-++..+.+..+-....+..+-+.-...+.+..++.+++
T Consensus 587 ~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~ 650 (1317)
T KOG0612|consen 587 EDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVE 650 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHH
Confidence 3445555555555555666666666666666666666666666666666555555555555554
No 87
>PRK01156 chromosome segregation protein; Provisional
Probab=96.00 E-value=2.6 Score=45.07 Aligned_cols=77 Identities=16% Similarity=0.251 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhh
Q 023704 113 KLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIEC 189 (278)
Q Consensus 113 kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ 189 (278)
.++..+...+..+.++...+.++.++.....++..++..+.....++.....++..++.+++.+..++..++..++.
T Consensus 623 ~le~~~~~le~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 699 (895)
T PRK01156 623 EIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRAR 699 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666666666666666666666666666665544444333444444444444444444444444433
No 88
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.99 E-value=0.9 Score=46.40 Aligned_cols=104 Identities=18% Similarity=0.268 Sum_probs=54.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhhccHHHHHHHHHHHHHHHHhh
Q 023704 107 LYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEI---NGDLAKARDESKDMAAIKAEIETERQEIHKG 183 (278)
Q Consensus 107 l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~L---ekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~ 183 (278)
+-.|...|+.. ++.++.|+.....+++.+.....+|..+|..- -.|+.+.+. -..+|..+|+.+..++.++
T Consensus 285 ~~~k~~~~~~~---l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~---Er~~l~r~l~~i~~~~d~l 358 (581)
T KOG0995|consen 285 MKSKKQHMEKK---LEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNL---ERNKLKRELNKIQSELDRL 358 (581)
T ss_pred HHhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 44444445444 77888888888888888888888888776532 112222222 2233444444444444444
Q ss_pred hhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHH
Q 023704 184 RAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQ 219 (278)
Q Consensus 184 raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklr 219 (278)
+..+-..+-...+ +-+..|+-++-.+.-+-+|.
T Consensus 359 ~k~vw~~~l~~~~---~f~~le~~~~~~~~l~~~i~ 391 (581)
T KOG0995|consen 359 SKEVWELKLEIED---FFKELEKKFIDLNSLIRRIK 391 (581)
T ss_pred HHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 4444333332222 33344455554444444443
No 89
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.99 E-value=1.8 Score=42.58 Aligned_cols=101 Identities=15% Similarity=0.258 Sum_probs=66.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhH----------HHHHHHHHHHhhhhHHHHHHHHHHHH
Q 023704 57 DIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAER----------DAEVRELYEKSLKLDAELRVIESMHA 126 (278)
Q Consensus 57 eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~----------e~~~r~l~~k~~kleaelr~~e~lk~ 126 (278)
+.-+-..+..++.++...|+.+|.-.-.+-+-+.....++.+++ +.+.++|+-++.++|-+-+....-..
T Consensus 131 n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~ 210 (499)
T COG4372 131 NLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRAN 210 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455667777788888887766666666666666655553 56789999999999888766555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLA 157 (278)
Q Consensus 127 El~qlr~ei~~l~~~rqeL~~evq~LekDL~ 157 (278)
-+++...++....+..+.+..+|+..-+.+.
T Consensus 211 a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~ 241 (499)
T COG4372 211 AAQARTEELARRAAAAQQTAQAIQQRDAQIS 241 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666655554443
No 90
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.89 E-value=1.2 Score=39.71 Aligned_cols=155 Identities=19% Similarity=0.239 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhhH---hHHHHHHHHHHHhhhhHHHH--
Q 023704 47 LEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHL---SSVAASVKA---ERDAEVRELYEKSLKLDAEL-- 118 (278)
Q Consensus 47 Le~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l---~~~i~~~~a---e~e~~~r~l~~k~~kleael-- 118 (278)
|.++-..++..|...--.|.+|+.....|++.+...+|-++.. ..-+.+++. ..|.+-|.|+..+..+|.+-
T Consensus 20 L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~ 99 (193)
T PF14662_consen 20 LADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQS 99 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555567777777777777777777666555 222333332 33667778877777777773
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hccHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 023704 119 --RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE----SKDMAAIKAEIETERQEIHKGRAAIECEKK 192 (278)
Q Consensus 119 --r~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d----~~kl~~LkaEIe~LrqEl~~~raa~e~ekk 192 (278)
..++.+..|-..+..+...+....++|..+...|...+-.|.+= ++-+.+--..|+.|..-|...|+..+.-+-
T Consensus 100 L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~ 179 (193)
T PF14662_consen 100 LVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRL 179 (193)
T ss_pred HHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555566666666666666666666666666555532 333444444556666555555555555554
Q ss_pred hchhhHHHH
Q 023704 193 NRASNHEQR 201 (278)
Q Consensus 193 ~~~e~~eq~ 201 (278)
....+-+|+
T Consensus 180 e~s~LEeql 188 (193)
T PF14662_consen 180 EKSRLEEQL 188 (193)
T ss_pred HHHHHHHHH
Confidence 445555555
No 91
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=95.75 E-value=1.3 Score=46.65 Aligned_cols=79 Identities=23% Similarity=0.381 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHH------HHHHHHH
Q 023704 145 MIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISV------AQQIERL 218 (278)
Q Consensus 145 L~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m------~~e~ekl 218 (278)
+..+|+.|++++++--.+.-..+.|+..++.|+.|+.++...=+-|-|.++|-++|- +.+.|... --=-|.|
T Consensus 647 ~k~KIe~L~~eIkkkIe~av~ss~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~q--ik~~~~~a~~~~~lkek~e~l 724 (762)
T PLN03229 647 LQEKIESLNEEINKKIERVIRSSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQ--IKQKIAEALNSSELKEKFEEL 724 (762)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH--HHHHHHHHhccHhHHHHHHHH
Confidence 356777777777776666555788999999999999888888888888888888762 23333221 2245778
Q ss_pred HHHHHhH
Q 023704 219 QAELANA 225 (278)
Q Consensus 219 rael~n~ 225 (278)
++||+.+
T Consensus 725 ~~e~~~~ 731 (762)
T PLN03229 725 EAELAAA 731 (762)
T ss_pred HHHHHHh
Confidence 8888543
No 92
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.73 E-value=5.1 Score=45.77 Aligned_cols=103 Identities=11% Similarity=0.100 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHH-------Hhhhhhhhhhhhh
Q 023704 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEI-------HKGRAAIECEKKN 193 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl-------~~~raa~e~ekk~ 193 (278)
++..+.++..+..++..+....+++..++..+.+.+..++....+.......++..++-+ ..+...++.-...
T Consensus 371 LeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~ak 450 (1486)
T PRK04863 371 VEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAK 450 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444444444333 2334444444444
Q ss_pred chhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 023704 194 RASNHEQREIMEKNIISVAQQIERLQAELA 223 (278)
Q Consensus 194 ~~e~~eq~q~meknl~~m~~e~eklrael~ 223 (278)
-.+...++..+|..|-.+..+++.++....
T Consensus 451 lee~e~qL~elE~kL~~lea~leql~~~~~ 480 (1486)
T PRK04863 451 EQEATEELLSLEQKLSVAQAAHSQFEQAYQ 480 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666777666666666666553
No 93
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.72 E-value=0.55 Score=38.83 Aligned_cols=83 Identities=17% Similarity=0.302 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhH
Q 023704 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNH 198 (278)
Q Consensus 119 r~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~ 198 (278)
.-++.|...|.++..++..+......|..+-..+..+|.++-..+..+.+...++..|+.++..+...++--=-..-|..
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~ 95 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKS 95 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 44888899999999999999999999999999999999988888888888888888888888887776554433333444
Q ss_pred HHH
Q 023704 199 EQR 201 (278)
Q Consensus 199 eq~ 201 (278)
|+.
T Consensus 96 E~v 98 (120)
T PF12325_consen 96 EEV 98 (120)
T ss_pred HHH
Confidence 433
No 94
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.71 E-value=0.14 Score=45.10 Aligned_cols=46 Identities=13% Similarity=0.176 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHH
Q 023704 167 AAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERL 218 (278)
Q Consensus 167 ~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~ekl 218 (278)
..|..|+..|+-++..+...+.--++-|.++++.. |-.|++|+++|
T Consensus 147 e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw------m~~k~~eAe~m 192 (194)
T PF08614_consen 147 EILQDELQALQLQLNMLEEKLRKLEEENRELVERW------MQRKAQEAERM 192 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHh
Confidence 34566677777777777777777777777777654 23366677765
No 95
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=95.70 E-value=0.44 Score=41.88 Aligned_cols=96 Identities=15% Similarity=0.159 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhc----hhhHHHH
Q 023704 126 AELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNR----ASNHEQR 201 (278)
Q Consensus 126 ~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~----~e~~eq~ 201 (278)
+|+.++..+|..|....++|...+..++.+|..+++.. -++++..+|..|+.+...-|..++.-|.+. .+-.+|.
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~L-t~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v 157 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSAL-TTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQV 157 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 58888999999999999999999999999999887653 367788888888888877777777777654 4667888
Q ss_pred HHHHHhHHHHHHHHHHHHHHH
Q 023704 202 EIMEKNIISVAQQIERLQAEL 222 (278)
Q Consensus 202 q~meknl~~m~~e~eklrael 222 (278)
.-|=...++|-|....+=-||
T Consensus 158 ~~~y~~~~~~wrk~krmf~ei 178 (201)
T KOG4603|consen 158 YREYQKYCKEWRKRKRMFREI 178 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888777665555
No 96
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.68 E-value=1 Score=47.42 Aligned_cols=106 Identities=19% Similarity=0.284 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhH
Q 023704 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNH 198 (278)
Q Consensus 119 r~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~ 198 (278)
...+.+..+..+++.||+++....+.|-.+...|+.|-=.++...+-|+.-..|.++||.||.++.-.+++-+.---|..
T Consensus 69 ~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~ 148 (717)
T PF09730_consen 69 KECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAA 148 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677778888888888888888888888888888887777777888888889999999999999999998876544444
Q ss_pred HHHH----HHHHhHHHHHHHHH---HHHHHHHh
Q 023704 199 EQRE----IMEKNIISVAQQIE---RLQAELAN 224 (278)
Q Consensus 199 eq~q----~meknl~~m~~e~e---klrael~n 224 (278)
.-.. -||-=|-++-.|=| .||-||..
T Consensus 149 rLk~iae~qleEALesl~~EReqk~~LrkEL~~ 181 (717)
T PF09730_consen 149 RLKEIAEKQLEEALESLKSEREQKNALRKELDQ 181 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332 25666667766655 37777743
No 97
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=95.66 E-value=3 Score=44.46 Aligned_cols=108 Identities=21% Similarity=0.281 Sum_probs=80.9
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------------h-hccHH
Q 023704 106 ELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARD-----------------E-SKDMA 167 (278)
Q Consensus 106 ~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~-----------------d-~~kl~ 167 (278)
++.++.-+|+++ .+.+..++..|..+++.+....+++...+..|+.+|..++. + ..+++
T Consensus 593 el~eelE~le~e---K~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~ 669 (769)
T PF05911_consen 593 ELEEELEKLESE---KEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLK 669 (769)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 344444444444 45555556667777777777777777777777777665542 1 34556
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHH
Q 023704 168 AIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIE 216 (278)
Q Consensus 168 ~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~e 216 (278)
.+++|++.++..+..+...|+.||..+.|+...-+.+|-.|-++.++..
T Consensus 670 ~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~ 718 (769)
T PF05911_consen 670 DLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEES 718 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccc
Confidence 7799999999999999999999999999999999999999999988764
No 98
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.65 E-value=3 Score=43.35 Aligned_cols=29 Identities=3% Similarity=-0.028 Sum_probs=18.2
Q ss_pred HHHHHHHHhhhhhhhhhhhhchhhHHHHH
Q 023704 174 ETERQEIHKGRAAIECEKKNRASNHEQRE 202 (278)
Q Consensus 174 e~LrqEl~~~raa~e~ekk~~~e~~eq~q 202 (278)
..||+.|..+...|-.-.+.|+++...+|
T Consensus 163 ~eLK~QL~Elq~~Fv~ltne~~elt~~lq 191 (617)
T PF15070_consen 163 RELKEQLAELQDAFVKLTNENMELTSALQ 191 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhHHHH
Confidence 45666666666666666666666665554
No 99
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.65 E-value=0.94 Score=43.41 Aligned_cols=122 Identities=16% Similarity=0.195 Sum_probs=86.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHH-HHH----HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023704 62 LQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERD-AEV----RELYEKSLKLDAELRVIESMHAELDRVRADIE 136 (278)
Q Consensus 62 l~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e-~~~----r~l~~k~~kleaelr~~e~lk~El~qlr~ei~ 136 (278)
-..|..|..+...|+|.|.-++-|+..|...+...+...+ ... ++=-+-+..||.=-..++.+..++..+--|.+
T Consensus 78 re~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEke 157 (319)
T PF09789_consen 78 REQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKE 157 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568889999999999999999999999998887655430 000 11111223334445667788888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-hcc---HHHHHHHHHHHHHHHHhh
Q 023704 137 KLCVIKQEMIKDLNEINGDLAKARDE-SKD---MAAIKAEIETERQEIHKG 183 (278)
Q Consensus 137 ~l~~~rqeL~~evq~LekDL~~~~~d-~~k---l~~LkaEIe~LrqEl~~~ 183 (278)
++..+|..+..++.+|..+|.-.=+. ..+ |.+|-.|-.=|+..|..+
T Consensus 158 El~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~ 208 (319)
T PF09789_consen 158 ELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQL 208 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999875544 566 566666666665555443
No 100
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.63 E-value=5.2 Score=45.24 Aligned_cols=96 Identities=14% Similarity=0.122 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhH----HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 65 NQRLAATHVALKQELSLAEQELRHLSSVAASVKAER----DAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCV 140 (278)
Q Consensus 65 nqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~----e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~ 140 (278)
.+.-...+..++.+|...+..+..|.........-. .....++...-.+++.-.+.+.....++.+++.++.++..
T Consensus 225 l~e~~~~~~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (1353)
T TIGR02680 225 VADALEQLDEYRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDA 304 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666666666666655554333322 2222233333444444445566666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 023704 141 IKQEMIKDLNEINGDLAKAR 160 (278)
Q Consensus 141 ~rqeL~~evq~LekDL~~~~ 160 (278)
.+..+..+.+.++.++..++
T Consensus 305 ~~~~le~~~~~l~~~~~~l~ 324 (1353)
T TIGR02680 305 RTEALEREADALRTRLEALQ 324 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 66666666666666666655
No 101
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.56 E-value=0.82 Score=40.83 Aligned_cols=58 Identities=21% Similarity=0.250 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHH--------HHHHhHHHHHHHHHHHHHHHHh
Q 023704 167 AAIKAEIETERQEIHKGRAAIECEKKNRASNHEQRE--------IMEKNIISVAQQIERLQAELAN 224 (278)
Q Consensus 167 ~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q--------~meknl~~m~~e~eklrael~n 224 (278)
..|+-|-+.|.+.+.++....+.-...+...+..+| .+|+.|..|...+|+--|+|..
T Consensus 103 ~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~e 168 (201)
T PF13851_consen 103 KDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNE 168 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444433333333333333 4678888888888888888743
No 102
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.55 E-value=1.3 Score=44.44 Aligned_cols=149 Identities=15% Similarity=0.268 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHhhhhhHhHHHHHHHHHHHh---hhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 72 HVALKQELSLAEQE-LRHLSSVAASVKAERDAEVRELYEKS---LKLDAE----LRVIESMHAELDRVRADIEKLCVIKQ 143 (278)
Q Consensus 72 ~~~L~qEL~laqhE-L~~l~~~i~~~~ae~e~~~r~l~~k~---~kleae----lr~~e~lk~El~qlr~ei~~l~~~rq 143 (278)
...+.+||.+.-.+ .+.+...+...+++.| .|++++ +||..- -++-.+|+.+.....+-+..+....+
T Consensus 251 ~~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~----~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~ 326 (622)
T COG5185 251 YEPSEQELKLGFEKFVHIINTDIANLKTQND----NLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQ 326 (622)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 34455666654333 3455555665555542 233332 233222 22233444444445555555555555
Q ss_pred HHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 023704 144 EMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELA 223 (278)
Q Consensus 144 eL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael~ 223 (278)
+....+.+|..++.. ...+|++|++.+++|+..+.+.+-.++.-++-++|. ..+.++|-.|.-+.++|+.++-
T Consensus 327 ~~~g~l~kl~~eie~---kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Er----e~L~reL~~i~~~~~~L~k~V~ 399 (622)
T COG5185 327 EWPGKLEKLKSEIEL---KEEEIKALQSNIDELHKQLRKQGISTEQFELMNQER----EKLTRELDKINIQSDKLTKSVK 399 (622)
T ss_pred hcchHHHHHHHHHHH---HHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHH----HHHHHHHHHhcchHHHHHHHHH
Confidence 555555555555544 356788899999999999998888888777766653 4578899999999999999986
Q ss_pred hHHhhHHH
Q 023704 224 NAEKRARA 231 (278)
Q Consensus 224 n~~~r~~a 231 (278)
..+--+.+
T Consensus 400 ~~~leaq~ 407 (622)
T COG5185 400 SRKLEAQG 407 (622)
T ss_pred hHHHHHHH
Confidence 66544443
No 103
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.54 E-value=3.4 Score=42.34 Aligned_cols=104 Identities=14% Similarity=0.168 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc----HH----------------HHHHHHHHHHHHHH
Q 023704 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKD----MA----------------AIKAEIETERQEIH 181 (278)
Q Consensus 122 e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~k----l~----------------~LkaEIe~LrqEl~ 181 (278)
..++.++..+...+..+...+.++...++.|.++..+++....+ +. ....-+..+..++.
T Consensus 379 sel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~ 458 (569)
T PRK04778 379 SELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIE 458 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555555555444443322111 11 12223355677777
Q ss_pred hhhhhhhhhhhhchhhHH-HHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023704 182 KGRAAIECEKKNRASNHE-QREIMEKNIISVAQQIERLQAELANAE 226 (278)
Q Consensus 182 ~~raa~e~ekk~~~e~~e-q~q~meknl~~m~~e~eklrael~n~~ 226 (278)
++...++. ...|.+-++ +....+..+-.+..+.+-|..-...++
T Consensus 459 ~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE 503 (569)
T PRK04778 459 ALAEELEE-KPINMEAVNRLLEEATEDVETLEEETEELVENATLTE 503 (569)
T ss_pred HHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777 777777777 777766666666666666665555555
No 104
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=95.52 E-value=0.23 Score=47.21 Aligned_cols=30 Identities=7% Similarity=0.190 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhch
Q 023704 166 MAAIKAEIETERQEIHKGRAAIECEKKNRA 195 (278)
Q Consensus 166 l~~LkaEIe~LrqEl~~~raa~e~ekk~~~ 195 (278)
+-.+..+.+.+...+......++--+|.|+
T Consensus 108 l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv 137 (314)
T PF04111_consen 108 LIEFQEERDSLKNQYEYASNQLDRLRKTNV 137 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHT--T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 344556666666666666666666666554
No 105
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=95.47 E-value=3.5 Score=43.30 Aligned_cols=48 Identities=25% Similarity=0.409 Sum_probs=25.3
Q ss_pred HHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHh
Q 023704 174 ETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEK 227 (278)
Q Consensus 174 e~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael~n~~~ 227 (278)
-.+..-+..++.+.-.+.....+-..+.+.| ++..|+-||--|..+|.
T Consensus 554 ~a~qat~d~a~~Dlqk~nrlkQdear~~~~~------lvqqv~dLR~~L~~~Eq 601 (961)
T KOG4673|consen 554 LAEQATNDEARSDLQKENRLKQDEARERESM------LVQQVEDLRQTLSKKEQ 601 (961)
T ss_pred HHHHHhhhhhhhhHHHHhhhhhhHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 3333344444443333333333344444443 67788888888877663
No 106
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.46 E-value=1.4 Score=37.36 Aligned_cols=17 Identities=12% Similarity=0.362 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHh
Q 023704 144 EMIKDLNEINGDLAKAR 160 (278)
Q Consensus 144 eL~~evq~LekDL~~~~ 160 (278)
.|.-.|+.|+.+|.+..
T Consensus 77 ~l~rriq~LEeele~ae 93 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAE 93 (143)
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 45556666666655544
No 107
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.40 E-value=1.3 Score=45.82 Aligned_cols=83 Identities=22% Similarity=0.326 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 68 LAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIK 147 (278)
Q Consensus 68 la~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~ 147 (278)
.......+..++...+.+|..+...+...+.+. .+..+ ....+.++.++..++.++..+......+..
T Consensus 389 ~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e--~i~~l----------~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~ 456 (650)
T TIGR03185 389 LQDAKSQLLKELRELEEELAEVDKKISTIPSEE--QIAQL----------LEELGEAQNELFRSEAEIEELLRQLETLKE 456 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH--HHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677788888888888888888888776542 34444 555677777777777777777777777777
Q ss_pred HHHHHHHHHHHHhhh
Q 023704 148 DLNEINGDLAKARDE 162 (278)
Q Consensus 148 evq~LekDL~~~~~d 162 (278)
++..+++++.+....
T Consensus 457 ~i~~~~~~~~~~~~~ 471 (650)
T TIGR03185 457 AIEALRKTLDEKTKQ 471 (650)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777664433
No 108
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.40 E-value=0.13 Score=45.28 Aligned_cols=56 Identities=29% Similarity=0.386 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHh
Q 023704 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAE 99 (278)
Q Consensus 44 ~~~Le~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae 99 (278)
...++..+..+..|+..+...+..++.....+..+|.....++......+..+..+
T Consensus 69 ~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~ 124 (194)
T PF08614_consen 69 ISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAE 124 (194)
T ss_dssp ---------------------------------------------HHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHH
Confidence 33567777777777777777776666666666666666666666655555544444
No 109
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=95.35 E-value=3 Score=40.65 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHH----hhhhccHHHHHHHHHHHHHHHHh
Q 023704 143 QEMIKDLNEINGDLAKA----RDESKDMAAIKAEIETERQEIHK 182 (278)
Q Consensus 143 qeL~~evq~LekDL~~~----~~d~~kl~~LkaEIe~LrqEl~~ 182 (278)
+.|..++..++.++.++ ..+.-++..++++|+.++..|..
T Consensus 257 ~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~ 300 (444)
T TIGR03017 257 QNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNA 300 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 34455555555555543 33366777888888777777654
No 110
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.32 E-value=2.8 Score=40.05 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=17.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhHHhh
Q 023704 201 REIMEKNIISVAQQIERLQAELANAEKR 228 (278)
Q Consensus 201 ~q~meknl~~m~~e~eklrael~n~~~r 228 (278)
....+..+..+..++.++++++..++.+
T Consensus 241 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 268 (423)
T TIGR01843 241 REEVLEELTEAQARLAELRERLNKARDR 268 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666777777777766643
No 111
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.30 E-value=1.7 Score=44.90 Aligned_cols=36 Identities=14% Similarity=0.337 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHH
Q 023704 138 LCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEI 173 (278)
Q Consensus 138 l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEI 173 (278)
+....+.|+.+|++++.-+.+.... ..+|..|.+++
T Consensus 290 kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l 326 (629)
T KOG0963|consen 290 KDSEIAQLSNDIERLEASLVEEREKHKAQISALEKEL 326 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555544444433 33343333333
No 112
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=95.25 E-value=2 Score=37.94 Aligned_cols=156 Identities=17% Similarity=0.226 Sum_probs=98.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------hHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 023704 63 QDNQRLAATHVALKQELSLAEQELRHLSSVAASV---------KAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRA 133 (278)
Q Consensus 63 ~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~---------~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ 133 (278)
..+++.+.-...|+..+.--+..+.-+..++... ....+...-+|-+-..+||.+-++.+.|.+--.-+|.
T Consensus 9 e~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lLRe 88 (182)
T PF15035_consen 9 EEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNALLRE 88 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3455556666666666666666666666666332 1111122334666788999999999997666666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHH
Q 023704 134 DIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVA 212 (278)
Q Consensus 134 ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~ 212 (278)
.++.....-+.|+.+++.++.|+..+..+ ..|-.. .+.+-.....-+.-|-+.-..+-.++.+.-.++.-|-
T Consensus 89 QLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~-------~~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr 161 (182)
T PF15035_consen 89 QLEQARKANEALQEDLQKLTQDWERLRDELEQKEAE-------WREEEENFNQYLSSEHSRLLSLWREVVALRRQFAELR 161 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777888888888777775544 333333 3334444444555555555666677777777776665
Q ss_pred H----HHHHHHHHHHhH
Q 023704 213 Q----QIERLQAELANA 225 (278)
Q Consensus 213 ~----e~eklrael~n~ 225 (278)
. .+..+|+|++.+
T Consensus 162 ~~TerdL~~~r~e~~r~ 178 (182)
T PF15035_consen 162 TATERDLSDMRAEFART 178 (182)
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 4 666777777544
No 113
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.20 E-value=2.1 Score=38.08 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q 023704 44 LHHLEDRIAIQHSDIQSLLQDNQRL 68 (278)
Q Consensus 44 ~~~Le~~L~~q~~eIq~ll~dnqrl 68 (278)
.+.|...+...+.+++.+..+|+-|
T Consensus 14 i~~L~n~l~elq~~l~~l~~ENk~L 38 (194)
T PF15619_consen 14 IKELQNELAELQRKLQELRKENKTL 38 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555533
No 114
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=95.19 E-value=3.9 Score=41.41 Aligned_cols=14 Identities=21% Similarity=0.510 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhH
Q 023704 212 AQQIERLQAELANA 225 (278)
Q Consensus 212 ~~e~eklrael~n~ 225 (278)
-.|+.+||..|.+-
T Consensus 368 e~E~q~lr~~l~~~ 381 (511)
T PF09787_consen 368 ESEIQKLRNQLSAR 381 (511)
T ss_pred HHHHHHHHHHHHHH
Confidence 45777788777553
No 115
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.19 E-value=3 Score=39.76 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHH
Q 023704 208 IISVAQQIERLQAELANAEKRARA 231 (278)
Q Consensus 208 l~~m~~e~eklrael~n~~~r~~a 231 (278)
+-.+..||..||..|+++.....+
T Consensus 231 I~~Lr~EV~RLR~qL~~sq~e~~~ 254 (310)
T PF09755_consen 231 IRSLRQEVSRLRQQLAASQQEHSE 254 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455888888888877755433
No 116
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=95.17 E-value=0.49 Score=37.32 Aligned_cols=88 Identities=15% Similarity=0.154 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHH
Q 023704 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQRE 202 (278)
Q Consensus 123 ~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q 202 (278)
.+.++-..++..+..+.....-+...+.+++.+..+ ..++.-++....+.|..|+..++..+. .+.+..++++
T Consensus 7 ~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~k---adqkyfa~mr~~d~l~~e~k~L~~~~~----Ks~~~i~~L~ 79 (96)
T PF08647_consen 7 SMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAK---ADQKYFAAMRSKDALDNEMKKLNTQLS----KSSELIEQLK 79 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHH----HhHHHHHHHH
Confidence 333444444444555555555555555555555444 357778888888888888888888775 3567788888
Q ss_pred HHHHhHHHHHHHHHH
Q 023704 203 IMEKNIISVAQQIER 217 (278)
Q Consensus 203 ~meknl~~m~~e~ek 217 (278)
-+|+++++--.+.||
T Consensus 80 ~~E~~~~~~l~~~Ek 94 (96)
T PF08647_consen 80 ETEKEFVRKLKNLEK 94 (96)
T ss_pred HHHHHHHHHHHHhhc
Confidence 899999998887775
No 117
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.17 E-value=1 Score=49.60 Aligned_cols=64 Identities=17% Similarity=0.214 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHh--hhhhhhhhhhhchhhHHH
Q 023704 137 KLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHK--GRAAIECEKKNRASNHEQ 200 (278)
Q Consensus 137 ~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~--~raa~e~ekk~~~e~~eq 200 (278)
.......++..++..++.++.....+.+|+..++.+....-....+ +...++++.+...+.++|
T Consensus 620 ~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq 685 (1317)
T KOG0612|consen 620 EISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKMLQNELEQ 685 (1317)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555555444555555555444444333333 444444444444444443
No 118
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.14 E-value=3.9 Score=40.71 Aligned_cols=51 Identities=18% Similarity=0.165 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023704 45 HHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAAS 95 (278)
Q Consensus 45 ~~Le~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~ 95 (278)
+-++.++...+.+++.+..+.-..-+.+..+++|-....|-.+.|+.....
T Consensus 218 ~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~re 268 (502)
T KOG0982|consen 218 IDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRRE 268 (502)
T ss_pred hhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666666777777777777778999999999999988888777664
No 119
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.13 E-value=6.3 Score=43.05 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=18.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhHH
Q 023704 203 IMEKNIISVAQQIERLQAELANAE 226 (278)
Q Consensus 203 ~meknl~~m~~e~eklrael~n~~ 226 (278)
-|=+.|.++-++-|+|+-++.|-.
T Consensus 582 k~idaL~alrrhke~LE~e~mnQq 605 (1195)
T KOG4643|consen 582 KYIDALNALRRHKEKLEEEIMNQQ 605 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344557788899999999987754
No 120
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.11 E-value=1.9 Score=46.77 Aligned_cols=110 Identities=20% Similarity=0.181 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhH---HHHHHHHHHHhhhhHHH---
Q 023704 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAER---DAEVRELYEKSLKLDAE--- 117 (278)
Q Consensus 44 ~~~Le~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~---e~~~r~l~~k~~kleae--- 117 (278)
-..|+..|+..+..|..+-.+..-.+.....|+++|+..+-++..+.+-+...-.+. +.++-++-.=.-++|+=
T Consensus 172 ~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ 251 (1195)
T KOG4643|consen 172 NLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTT 251 (1195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCc
Confidence 336777777777778777777777778888888888888888888888777666554 22222221111111110
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 118 ----LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEIN 153 (278)
Q Consensus 118 ----lr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~Le 153 (278)
+-..+-+|..+..++.+-+-|....+.|..+++.+.
T Consensus 252 ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lr 291 (1195)
T KOG4643|consen 252 YKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLR 291 (1195)
T ss_pred cchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 111223566666666666666666666666666555
No 121
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.08 E-value=6.1 Score=42.63 Aligned_cols=76 Identities=18% Similarity=0.308 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023704 147 KDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAE 226 (278)
Q Consensus 147 ~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael~n~~ 226 (278)
..+..+...+.+.+...+.|..+..++..+...+...+ -..+-..+.+++.+..+.++..+...+++|..++....
T Consensus 274 ~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~ 349 (908)
T COG0419 274 EELRELERLLEELEEKIERLEELEREIEELEEELEGLR----ALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELA 349 (908)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555666666666666666555522 22233344556666666777777777777777666653
No 122
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.07 E-value=1.8 Score=42.97 Aligned_cols=55 Identities=16% Similarity=0.249 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 023704 44 LHHLEDRIAIQHSDIQSLLQDNQ--------RLAATHVALKQELSLAEQELRHLSSVAASVKA 98 (278)
Q Consensus 44 ~~~Le~~L~~q~~eIq~ll~dnq--------rla~~~~~L~qEL~laqhEL~~l~~~i~~~~a 98 (278)
...+++++...+..+..+...|. .+......+++++..++.++..++..+..++.
T Consensus 170 l~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~ 232 (498)
T TIGR03007 170 IKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKR 232 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888887776654432 24566777888888777777777666665543
No 123
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=95.07 E-value=0.34 Score=35.51 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 114 LDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDL 149 (278)
Q Consensus 114 leaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~ev 149 (278)
|++|||+-..+..||..+++.-..+....++...+.
T Consensus 6 L~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn 41 (61)
T PF08826_consen 6 LEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRN 41 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888888888888888776665555444444333
No 124
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=95.05 E-value=0.42 Score=49.15 Aligned_cols=84 Identities=13% Similarity=0.266 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHH
Q 023704 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQ 200 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq 200 (278)
++.++.|+..|..++.++......|..++.++..++..-.....++.++..+|+.|+.+|......+|..++. ...+.+
T Consensus 431 ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~-l~~l~k 509 (652)
T COG2433 431 VERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERK-LAELRK 509 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3334444444444444444444444444444444433111114445666666667766666666666655443 333445
Q ss_pred HHHHH
Q 023704 201 REIME 205 (278)
Q Consensus 201 ~q~me 205 (278)
++.||
T Consensus 510 ~~~lE 514 (652)
T COG2433 510 MRKLE 514 (652)
T ss_pred HHhhh
Confidence 55554
No 125
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=94.98 E-value=2.8 Score=40.75 Aligned_cols=66 Identities=11% Similarity=0.252 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhccHHHHHHHHHHHHHHHHhhhhh
Q 023704 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR---DESKDMAAIKAEIETERQEIHKGRAA 186 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~---~d~~kl~~LkaEIe~LrqEl~~~raa 186 (278)
...++.+..++...+.++.....+++.++..+.++|.+-. +|++-|-.+|.-|..||+||..+.-.
T Consensus 282 ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvr 350 (359)
T PF10498_consen 282 LSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVR 350 (359)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 4444444445555555555555555555555555555543 44677788888899999998876543
No 126
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=94.96 E-value=2.3 Score=42.79 Aligned_cols=71 Identities=13% Similarity=0.145 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhh
Q 023704 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIE 188 (278)
Q Consensus 118 lr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e 188 (278)
.-.++.++.||...+.+|+-|.+.+.+|..+|..--=-..+|..-++--..|-.|++.+.-+..+++..+.
T Consensus 329 ~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~ 399 (622)
T COG5185 329 PGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVK 399 (622)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 56677888888888888888888888888777543222333333344444555555555555555555553
No 127
>PF15294 Leu_zip: Leucine zipper
Probab=94.90 E-value=3.4 Score=38.87 Aligned_cols=118 Identities=23% Similarity=0.364 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhhhhHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Q 023704 101 DAEVRELYEKSLKLDAELRV----------------------IESMHAELDRVRADIEKLCVIKQ-------EMIKDLNE 151 (278)
Q Consensus 101 e~~~r~l~~k~~kleaelr~----------------------~e~lk~El~qlr~ei~~l~~~rq-------eL~~evq~ 151 (278)
+++=|+|.+.++++|..--. .+-+..||..++.|.++|....+ ....+-..
T Consensus 85 elEn~eLLe~i~~~E~~~~~~~~~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~k 164 (278)
T PF15294_consen 85 ELENRELLEQIAEFEKQEFTSSFKPNQETSKPKLEPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSK 164 (278)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556688887777654211 11144555555555554444333 33333344
Q ss_pred HHHHHHHHhh------------h-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHH
Q 023704 152 INGDLAKARD------------E-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERL 218 (278)
Q Consensus 152 LekDL~~~~~------------d-~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~ekl 218 (278)
|+..|++.+. . .+++..|+..+..++- ++||. -.+..++.++|+-+|.+.-.+|=++
T Consensus 165 l~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~---------e~ek~-~~d~~~~~k~L~e~L~~~KhelL~~ 234 (278)
T PF15294_consen 165 LEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKS---------ELEKA-LQDKESQQKALEETLQSCKHELLRV 234 (278)
T ss_pred HHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHH---------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444443 2 4556666666666653 33443 4455669999999999999999999
Q ss_pred HHHHHhHHhh
Q 023704 219 QAELANAEKR 228 (278)
Q Consensus 219 rael~n~~~r 228 (278)
+..|..+++=
T Consensus 235 QeqL~~aeke 244 (278)
T PF15294_consen 235 QEQLSLAEKE 244 (278)
T ss_pred chhhhcchhh
Confidence 9998887743
No 128
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=94.85 E-value=1.9 Score=39.46 Aligned_cols=56 Identities=21% Similarity=0.286 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHH
Q 023704 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQE 179 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqE 179 (278)
....-++|.+.+.||..|....+++..+-..+...+.++.. .+.-|+.+|+.++.+
T Consensus 48 r~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~e---ey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 48 RMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYE---EYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 33334455555555555555555555555554444444331 233345555555555
No 129
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.84 E-value=3.8 Score=39.11 Aligned_cols=54 Identities=20% Similarity=0.287 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhh
Q 023704 137 KLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECE 190 (278)
Q Consensus 137 ~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~raa~e~e 190 (278)
.+.+..+.|..+|.+|.+.|...+.+ ..++.....+...++.+=.+++-.+.-|
T Consensus 226 ~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~eek~ireEN~rLqr~L~~E 280 (310)
T PF09755_consen 226 RLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQYLQEEKEIREENRRLQRKLQRE 280 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444 4444444444444444444444444333
No 130
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.79 E-value=2.8 Score=37.38 Aligned_cols=96 Identities=11% Similarity=0.210 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHH
Q 023704 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQR 201 (278)
Q Consensus 122 e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~ 201 (278)
+..+..+..+..+...|..-.+.+..++..|.++|..+..|-..+..+++.+..+.+++..++-..+--.-.+......+
T Consensus 44 ~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~Er 123 (201)
T PF13851_consen 44 ERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQER 123 (201)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666677777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhHHHHHHHHHH
Q 023704 202 EIMEKNIISVAQQIER 217 (278)
Q Consensus 202 q~meknl~~m~~e~ek 217 (278)
..+...+.++..||..
T Consensus 124 deL~~kf~~~i~evqQ 139 (201)
T PF13851_consen 124 DELYRKFESAIQEVQQ 139 (201)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777777643
No 131
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=94.77 E-value=1.5 Score=40.00 Aligned_cols=92 Identities=17% Similarity=0.251 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHH
Q 023704 132 RADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISV 211 (278)
Q Consensus 132 r~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m 211 (278)
+..+.++...+++|..++..+++++..++. ....+...++..++++..+...++.-++.+.+..-.+..|-..|-..
T Consensus 41 Q~~id~~~~e~~~L~~e~~~l~~e~e~L~~---~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~ 117 (251)
T PF11932_consen 41 QKRIDQWDDEKQELLAEYRQLEREIENLEV---YNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQF 117 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444333 23334444555555555555555555556666666666666665553
Q ss_pred HH------------HHHHHHHHHHhHH
Q 023704 212 AQ------------QIERLQAELANAE 226 (278)
Q Consensus 212 ~~------------e~eklrael~n~~ 226 (278)
.. -|++||+.+.+++
T Consensus 118 v~~d~Pf~~~eR~~Rl~~L~~~l~~~d 144 (251)
T PF11932_consen 118 VELDLPFLLEERQERLARLRAMLDDAD 144 (251)
T ss_pred HhcCCCCChHHHHHHHHHHHHhhhccC
Confidence 33 3566666665554
No 132
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.70 E-value=4.2 Score=41.76 Aligned_cols=29 Identities=24% Similarity=0.249 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023704 68 LAATHVALKQELSLAEQELRHLSSVAASV 96 (278)
Q Consensus 68 la~~~~~L~qEL~laqhEL~~l~~~i~~~ 96 (278)
|-.....|+-++++++|||..++..++..
T Consensus 48 Lkqq~eEleaeyd~~R~Eldqtkeal~q~ 76 (772)
T KOG0999|consen 48 LKQQLEELEAEYDLARTELDQTKEALGQY 76 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444445554444444433
No 133
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.68 E-value=6.3 Score=40.87 Aligned_cols=22 Identities=14% Similarity=0.424 Sum_probs=10.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHH
Q 023704 202 EIMEKNIISVAQQIERLQAELA 223 (278)
Q Consensus 202 q~meknl~~m~~e~eklrael~ 223 (278)
.+-.+=+.-|..=|.|-++||.
T Consensus 487 s~Yt~RIlEIv~NI~KQk~eI~ 508 (594)
T PF05667_consen 487 SAYTRRILEIVKNIRKQKEEIE 508 (594)
T ss_pred HHHHHHHHHHHHhHHHHHHHHH
Confidence 3333344445555555555553
No 134
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=94.64 E-value=5.1 Score=39.65 Aligned_cols=23 Identities=4% Similarity=0.063 Sum_probs=14.6
Q ss_pred hccHHHHHHHHHHHHHHHHhhhh
Q 023704 163 SKDMAAIKAEIETERQEIHKGRA 185 (278)
Q Consensus 163 ~~kl~~LkaEIe~LrqEl~~~ra 185 (278)
..++..++.+|..++.++..+++
T Consensus 242 ~~~i~~l~~~i~~~~~~~~~~~~ 264 (457)
T TIGR01000 242 QQQIDQLQKSIASYQVQKAGLTK 264 (457)
T ss_pred HHHHHHHHHHHHHHHHHHhhccC
Confidence 45566666677666666666544
No 135
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.60 E-value=2.4 Score=35.64 Aligned_cols=29 Identities=10% Similarity=0.302 Sum_probs=13.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 63 QDNQRLAATHVALKQELSLAEQELRHLSS 91 (278)
Q Consensus 63 ~dnqrla~~~~~L~qEL~laqhEL~~l~~ 91 (278)
...+.+..+...+..++...++.+.+|..
T Consensus 52 ~~~e~l~~~~~~l~~d~~~l~~~~~rL~~ 80 (151)
T PF11559_consen 52 EQREDLSDKLRRLRSDIERLQNDVERLKE 80 (151)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 136
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.56 E-value=8.7 Score=41.95 Aligned_cols=105 Identities=19% Similarity=0.255 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hccHHHHHHHHHHHHHHHHhhhhhhhhh
Q 023704 115 DAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE----SKDMAAIKAEIETERQEIHKGRAAIECE 190 (278)
Q Consensus 115 eaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d----~~kl~~LkaEIe~LrqEl~~~raa~e~e 190 (278)
.+-..+.+-+++++..+..++......+.+|..++..+..++.....+ +.++.+.-..++.+.+++..+-.+.|+-
T Consensus 251 ~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~l 330 (1072)
T KOG0979|consen 251 NAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESL 330 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666677777776666666666666666555555555554433 4556666666666777777777776666
Q ss_pred hhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023704 191 KKNRASNHEQREIMEKNIISVAQQIERLQAELANAE 226 (278)
Q Consensus 191 kk~~~e~~eq~q~meknl~~m~~e~eklrael~n~~ 226 (278)
|+..-.. .+++......+..++++|.+++
T Consensus 331 k~~~~~r-------q~~i~~~~k~i~~~q~el~~~~ 359 (1072)
T KOG0979|consen 331 KKAAEKR-------QKRIEKAKKMILDAQAELQETE 359 (1072)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHhhhhhcC
Confidence 6543222 2344555556666666665554
No 137
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=94.50 E-value=4.2 Score=42.76 Aligned_cols=27 Identities=22% Similarity=0.166 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 65 NQRLAATHVALKQELSLAEQELRHLSS 91 (278)
Q Consensus 65 nqrla~~~~~L~qEL~laqhEL~~l~~ 91 (278)
.+-+..+...++++|..++.+|.....
T Consensus 196 ~~~L~~ql~~l~~~l~~aE~~l~~fk~ 222 (754)
T TIGR01005 196 ADFLAPEIADLSKQSRDAEAEVAAYRA 222 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666655555544
No 138
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=94.42 E-value=2.1 Score=37.14 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=10.7
Q ss_pred hccHHHHHHHHHHHHHHHHhhh
Q 023704 163 SKDMAAIKAEIETERQEIHKGR 184 (278)
Q Consensus 163 ~~kl~~LkaEIe~LrqEl~~~r 184 (278)
..++..+...++.+.+++..++
T Consensus 129 ~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 129 EERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555554444
No 139
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=94.41 E-value=7.4 Score=40.54 Aligned_cols=95 Identities=18% Similarity=0.316 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhhHhHHHHHHHHHHHhhhhHHH
Q 023704 45 HHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAA-------SVKAERDAEVRELYEKSLKLDAE 117 (278)
Q Consensus 45 ~~Le~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~-------~~~ae~e~~~r~l~~k~~kleae 117 (278)
..|..++..+...++..+.+|+.|..-.......|.-....++++..... .+.+++..-.|.
T Consensus 90 ~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRA----------- 158 (617)
T PF15070_consen 90 EHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRA----------- 158 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHH-----------
Confidence 34455555555566666667777765555555555544444555444332 222233222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLN 150 (278)
Q Consensus 118 lr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq 150 (278)
+.-+..+|..|..++.-...|....-+|+..++
T Consensus 159 lsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq 191 (617)
T PF15070_consen 159 LSQNRELKEQLAELQDAFVKLTNENMELTSALQ 191 (617)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHH
Confidence 334566666666666666666655555555444
No 140
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=94.35 E-value=11 Score=42.28 Aligned_cols=160 Identities=19% Similarity=0.239 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHH
Q 023704 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIES 123 (278)
Q Consensus 44 ~~~Le~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~ 123 (278)
|..|..++-.... .-+.......+-.-+....+|+-..+.+|..+...-.....-. + .+.+..+.++.
T Consensus 167 p~~LKkkfD~IF~-~tky~KAld~~kk~rkd~~~evk~~~~~l~~lk~~K~~~e~~~------l-----~i~~~~~ki~~ 234 (1294)
T KOG0962|consen 167 PKNLKKKFDDIFS-ATKYTKALDSLKKLRKDQSQEVKTKKQELEHLKTLKERAEVLR------L-----NIHSGQRKIEK 234 (1294)
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H-----HHHHHHHHHHH
Confidence 5577777766544 2223344444445555555666666666666543333211111 1 33444677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhh--------hhhhhch
Q 023704 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIE--------CEKKNRA 195 (278)
Q Consensus 124 lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e--------~ekk~~~ 195 (278)
.+.++..|..++........++...++.+++.+.++. .|..+...+..++..++..+. ...+.+.
T Consensus 235 ~ke~v~e~e~e~~~~~~~i~ei~~~~~el~k~~~~~~-------~l~~e~~~l~~~~~~l~~~i~~~~~~t~~~l~~~~~ 307 (1294)
T KOG0962|consen 235 SKEEVSELENELGPIEAKIEEIEKSLKELEKLLKQVK-------LLDSEHKNLKKQISRLREKILKIFDGTDEELGELLS 307 (1294)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHH
Confidence 7877777777777777777777766666666655544 444555555555555554444 4445555
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 023704 196 SNHEQREIMEKNIISVAQQIERLQAEL 222 (278)
Q Consensus 196 e~~eq~q~meknl~~m~~e~eklrael 222 (278)
..-+-+..|+..+..+-+++.+|-.+.
T Consensus 308 n~~~~~~~~~~~~~~~e~~~~~l~~e~ 334 (1294)
T KOG0962|consen 308 NFEERLEEMGEKLRELEREISDLNEER 334 (1294)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 555556667777777766666655443
No 141
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.33 E-value=7.4 Score=41.56 Aligned_cols=42 Identities=10% Similarity=0.080 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhH
Q 023704 167 AAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNI 208 (278)
Q Consensus 167 ~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl 208 (278)
.-...||+.|+++|+......-+---.++++-+|++.|..+.
T Consensus 482 e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~ 523 (1118)
T KOG1029|consen 482 ELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAH 523 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhc
Confidence 334445555555555554444444444555555555555444
No 142
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=94.31 E-value=3.1 Score=40.23 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAK 158 (278)
Q Consensus 124 lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~ 158 (278)
+++|-++++..++.+...+.|...+.+.|.+|+.+
T Consensus 139 ~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE 173 (401)
T PF06785_consen 139 LREENQCLQLQLDALQQECGEKEEESQTLNRELAE 173 (401)
T ss_pred HHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 34455555566666666666666666666555554
No 143
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=94.27 E-value=1.6 Score=45.84 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhH
Q 023704 65 NQRLAATHVALKQELSLAEQELRHLSSVAASVKAER 100 (278)
Q Consensus 65 nqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~ 100 (278)
++....+..=|.++|...+.+|...+..+.+.+...
T Consensus 262 ~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 262 AAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444455566677777777777777777777666654
No 144
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=8.6 Score=40.56 Aligned_cols=167 Identities=18% Similarity=0.218 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhH----------HHHHHHHHHHhhhhH
Q 023704 46 HLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAER----------DAEVRELYEKSLKLD 115 (278)
Q Consensus 46 ~Le~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~----------e~~~r~l~~k~~kle 115 (278)
.+++++...-.++......|-.+........|.......+++.|...+....+.. |.|.|.+-....++.
T Consensus 465 d~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~ 544 (698)
T KOG0978|consen 465 DMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLI 544 (698)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhH
Confidence 3333333333355555555666666666666777777777777766666555543 344444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhch
Q 023704 116 AELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRA 195 (278)
Q Consensus 116 aelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~ 195 (278)
+++... ..-+......+.++......|..++...+++|.+++ -++.++..+|+.+++...|+...++-.++.
T Consensus 545 ~el~~~---~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~---~~~~e~~~ele~~~~k~~rleEE~e~L~~k-- 616 (698)
T KOG0978|consen 545 KELTTL---TQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQ---EQYAELELELEIEKFKRKRLEEELERLKRK-- 616 (698)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 443211 111122222222223333333333333333333322 233445555555555555555555444432
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023704 196 SNHEQREIMEKNIISVAQQIERLQAELANAE 226 (278)
Q Consensus 196 e~~eq~q~meknl~~m~~e~eklrael~n~~ 226 (278)
++.++.++. .+.=.+.|..||.+..
T Consensus 617 --le~~k~~~~----~~s~d~~L~EElk~yK 641 (698)
T KOG0978|consen 617 --LERLKKEES----GASADEVLAEELKEYK 641 (698)
T ss_pred --HHHhccccc----cccccHHHHHHHHHHH
Confidence 222222222 2223556667776665
No 145
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.22 E-value=0.013 Score=61.27 Aligned_cols=115 Identities=20% Similarity=0.324 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHh
Q 023704 103 EVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHK 182 (278)
Q Consensus 103 ~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~ 182 (278)
.+|+-.+|..|+|+++.....=-.++..++..++.|......|...+..++.++.++. +++..|+.+++++..
T Consensus 302 ~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~-------~~~~qle~~k~qi~e 374 (713)
T PF05622_consen 302 ELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKAR-------ALKSQLEEYKKQIQE 374 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHH
Confidence 3555667777888885554443345566667777777776777777777776666544 455555555555555
Q ss_pred hhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 023704 183 GRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELAN 224 (278)
Q Consensus 183 ~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael~n 224 (278)
+......+++-.-.+......++.-+.++.+|.+.|..|...
T Consensus 375 Le~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~ 416 (713)
T PF05622_consen 375 LEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDS 416 (713)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555544444445555555555566666666655543
No 146
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=94.19 E-value=6.4 Score=40.24 Aligned_cols=114 Identities=15% Similarity=0.221 Sum_probs=87.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 023704 114 LDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKN 193 (278)
Q Consensus 114 leaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~ 193 (278)
+|-|+.+...+..-+.-+...+.++.....-|..+|..+.+--.=...+.+......++|+.+.+.+...-..++..+.+
T Consensus 297 lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~ 376 (570)
T COG4477 297 LEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVA 376 (570)
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 35555555666666666777777777777788888887776655445567888889999999999999999999999999
Q ss_pred chhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHh
Q 023704 194 RASNHEQREIMEKNIISVAQQIERLQAELANAEK 227 (278)
Q Consensus 194 ~~e~~eq~q~meknl~~m~~e~eklrael~n~~~ 227 (278)
+.+..+-++-.++-|-..-.+.++++..|..-.|
T Consensus 377 yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~Lrk 410 (570)
T COG4477 377 YSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRK 410 (570)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 9988888888888888888777777777655543
No 147
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=94.18 E-value=5.3 Score=37.91 Aligned_cols=74 Identities=16% Similarity=0.379 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhh---hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHH
Q 023704 142 KQEMIKDLNEINGDLAKARDE---SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERL 218 (278)
Q Consensus 142 rqeL~~evq~LekDL~~~~~d---~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~ekl 218 (278)
-.++...|..|.+.+..+..- ..++.+|.++++.++.+....+..|. ++..+.|..-..|+.+-++++.+
T Consensus 133 E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~-------~la~eaqe~he~m~k~~~~~De~ 205 (294)
T COG1340 133 ERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQ-------ELANEAQEYHEEMIKLFEEADEL 205 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666665532 55566666666666666555554443 45556666666666666666666
Q ss_pred HHHH
Q 023704 219 QAEL 222 (278)
Q Consensus 219 rael 222 (278)
|.+.
T Consensus 206 Rkea 209 (294)
T COG1340 206 RKEA 209 (294)
T ss_pred HHHH
Confidence 6554
No 148
>PF13514 AAA_27: AAA domain
Probab=94.17 E-value=11 Score=41.61 Aligned_cols=45 Identities=16% Similarity=0.361 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 023704 147 KDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEK 191 (278)
Q Consensus 147 ~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ek 191 (278)
..+..|...+.+.+....++..+..+++.+++++..+...++.-.
T Consensus 784 ~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 828 (1111)
T PF13514_consen 784 EALEALRARLEEAREAQEERERLQEQLEELEEELEQAEEELEELE 828 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666665555556666666666666555555544333
No 149
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=94.13 E-value=9.2 Score=40.53 Aligned_cols=29 Identities=14% Similarity=0.126 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023704 68 LAATHVALKQELSLAEQELRHLSSVAASV 96 (278)
Q Consensus 68 la~~~~~L~qEL~laqhEL~~l~~~i~~~ 96 (278)
|..+...++..|..++.+|+....++..+
T Consensus 284 L~~~L~e~Q~qLe~a~~als~q~eki~~L 312 (717)
T PF09730_consen 284 LLSNLQESQKQLEHAQGALSEQQEKINRL 312 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666665555554444433
No 150
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.13 E-value=6.7 Score=38.94 Aligned_cols=101 Identities=12% Similarity=0.165 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhh------------------hccHHHHHHHHHHHHH
Q 023704 124 MHAELDRVRADIEKLCV-------IKQEMIKDLNEINGDLAKARDE------------------SKDMAAIKAEIETERQ 178 (278)
Q Consensus 124 lk~El~qlr~ei~~l~~-------~rqeL~~evq~LekDL~~~~~d------------------~~kl~~LkaEIe~Lrq 178 (278)
++.++.+++.++..+.. ..+.+..++..+++.+.+.-.. ..++..++.+++.++.
T Consensus 252 l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~ 331 (498)
T TIGR03007 252 LDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEA 331 (498)
T ss_pred hHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555543 2344555566666655443111 1234444444455544
Q ss_pred HHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHhh
Q 023704 179 EIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKR 228 (278)
Q Consensus 179 El~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael~n~~~r 228 (278)
++..++..++.-+ +.+.+.-.-+..+..+.||++-.+.-....-+|
T Consensus 332 ~~~~l~~~~~~~~----~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r 377 (498)
T TIGR03007 332 RVAELTARIERLE----SLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTR 377 (498)
T ss_pred HHHHHHHHHHHHH----HHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444433322 122233344666777777777777666555444
No 151
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.04 E-value=10 Score=41.74 Aligned_cols=146 Identities=18% Similarity=0.266 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 68 LAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIK 147 (278)
Q Consensus 68 la~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~ 147 (278)
.+..+..|+.+...++-+..+-+.... |..++..-+....+.++ +..++..+.....++.......-....
T Consensus 199 eaeky~~lkde~~~~q~e~~L~qLfhv------E~~i~k~~~els~~~~e---i~~~~~~~d~~e~ei~~~k~e~~ki~r 269 (1141)
T KOG0018|consen 199 EAEKYQRLKDEKGKAQKEQFLWELFHV------EACIEKANDELSRLNAE---IPKLKERMDKKEREIRVRKKERGKIRR 269 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh------hhhHhhhhHHHHHHhhh---hHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 355556666666666655554433333 22222244444444444 222222333333333333333334444
Q ss_pred HHHHHHHHHHHHhhh-hc--cHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 023704 148 DLNEINGDLAKARDE-SK--DMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAEL 222 (278)
Q Consensus 148 evq~LekDL~~~~~d-~~--kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael 222 (278)
+++.+.+.+.+.... .+ .+-.++.+...++..+...+..++-=++.+..+-+.++.++|.++++..=-+-+-.|+
T Consensus 270 e~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei 347 (1141)
T KOG0018|consen 270 ELQKVDKKISEKEEKLAERPELIKVKENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEI 347 (1141)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhhcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554444 22 1223344555566667777777777777777777888888888777655444444444
No 152
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.00 E-value=3.6 Score=43.54 Aligned_cols=13 Identities=31% Similarity=0.317 Sum_probs=8.7
Q ss_pred ccCceEE-EeecCC
Q 023704 3 IYGNSLH-TTLHNH 15 (278)
Q Consensus 3 ifG~tli-vtfhp~ 15 (278)
+||.+|| +|.+.+
T Consensus 451 ~lg~sll~lts~~e 464 (717)
T PF10168_consen 451 VLGYSLLALTSSGE 464 (717)
T ss_pred CCCceEEEEccCCc
Confidence 4899988 555443
No 153
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=93.88 E-value=11 Score=40.63 Aligned_cols=161 Identities=17% Similarity=0.252 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 68 LAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIK 147 (278)
Q Consensus 68 la~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~ 147 (278)
....+..+...+...+..+..|......+.-......+ .......++..+.....+...+..+..++..+.....+|..
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~ 350 (908)
T COG0419 272 REEELRELERLLEELEEKIERLEELEREIEELEEELEG-LRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAE 350 (908)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555544444333322222 11122222222333333333333333333333333333333
Q ss_pred HHHHHHHHHHHHhhh-hccHHHHHHHHH-------HHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHH
Q 023704 148 DLNEINGDLAKARDE-SKDMAAIKAEIE-------TERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQ 219 (278)
Q Consensus 148 evq~LekDL~~~~~d-~~kl~~LkaEIe-------~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklr 219 (278)
......+-+.+.... ..++..+..++. .+...++........-.....+..++....++.+....+++++++
T Consensus 351 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~ 430 (908)
T COG0419 351 EKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELE 430 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333322 222333333333 344445555555555556666677777777778888888888888
Q ss_pred HHHHhHHhhH
Q 023704 220 AELANAEKRA 229 (278)
Q Consensus 220 ael~n~~~r~ 229 (278)
.++.+.+..-
T Consensus 431 ~~~~~~~~~~ 440 (908)
T COG0419 431 EEIKKLEEQI 440 (908)
T ss_pred HHHHHHHHHH
Confidence 8887776443
No 154
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=93.88 E-value=9.4 Score=40.20 Aligned_cols=51 Identities=16% Similarity=0.294 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh----hccHHHHHHHHHHHHHHHHhhhhhhhhh
Q 023704 140 VIKQEMIKDLNEINGDLAKARDE----SKDMAAIKAEIETERQEIHKGRAAIECE 190 (278)
Q Consensus 140 ~~rqeL~~evq~LekDL~~~~~d----~~kl~~LkaEIe~LrqEl~~~raa~e~e 190 (278)
.....|+.+++.|+++|....+. .+.|.....|-+.|++++.+...+++-.
T Consensus 162 ~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q 216 (739)
T PF07111_consen 162 EALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQ 216 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34556777888888877776642 5667777778888888888887777643
No 155
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.82 E-value=10 Score=39.90 Aligned_cols=60 Identities=15% Similarity=0.255 Sum_probs=42.0
Q ss_pred hccHHHHHHHHHHHHHHHHhhhhh------hhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 023704 163 SKDMAAIKAEIETERQEIHKGRAA------IECEKKNRASNHEQREIMEKNIISVAQQIERLQAEL 222 (278)
Q Consensus 163 ~~kl~~LkaEIe~LrqEl~~~raa------~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael 222 (278)
.+-++.|.......+.++.++|.. ...|.+.....+-+...|+-.++..==|.++|.++|
T Consensus 250 lqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL 315 (716)
T KOG4593|consen 250 LQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKL 315 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 555666677777777777655532 345667777777777778877777777888888777
No 156
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=93.79 E-value=6.2 Score=39.07 Aligned_cols=108 Identities=17% Similarity=0.251 Sum_probs=73.4
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------------
Q 023704 109 EKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR---------------------------- 160 (278)
Q Consensus 109 ~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~---------------------------- 160 (278)
+|.+..-+=.++.++-+.-|.+|+.+-++|.+.-|||...+. .+|.++.
T Consensus 439 QKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLa---aEItrLRtlltgdGgGtGsplaqgkdayELEVLLR 515 (593)
T KOG4807|consen 439 QKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLA---AEITRLRTLLTGDGGGTGSPLAQGKDAYELEVLLR 515 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHH---HHHHHHHHHhccCCCCCCCccccCcchhhHHHHHH
Confidence 344444444778888889999999999999999998865432 3333332
Q ss_pred hhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 023704 161 DESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAEL 222 (278)
Q Consensus 161 ~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael 222 (278)
...+.|.-|+.||..||-||+.+-.+-.|=...+.+.+-.+-...- .--.+|+.|...|
T Consensus 516 VKEsEiQYLKqEissLkDELQtalrDKkyaSdKYkDiYtELSiaKa---kadcdIsrLKEqL 574 (593)
T KOG4807|consen 516 VKESEIQYLKQEISSLKDELQTALRDKKYASDKYKDIYTELSIAKA---KADCDISRLKEQL 574 (593)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHH---hhhccHHHHHHHH
Confidence 1134567788999999999998888888877777776654422110 1123888888877
No 157
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=93.75 E-value=8.7 Score=38.89 Aligned_cols=109 Identities=18% Similarity=0.206 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 80 SLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLD-----------------AELRVIESMHAELDRVRADIEKLCVIK 142 (278)
Q Consensus 80 ~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kle-----------------aelr~~e~lk~El~qlr~ei~~l~~~r 142 (278)
.-.+..|..+...+..-...-...+-..+.+..++| ..++....+...+.-++.......++-
T Consensus 158 ~sL~ekl~lld~al~~~~~~~~~~~~~fl~rtl~~e~~~~~L~~~~~A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el 237 (511)
T PF09787_consen 158 RSLQEKLSLLDEALKREDGNAITAVVEFLKRTLKKEIERQELEERPKALRHYIEYLRESGELQEQLELLKAEGESEEAEL 237 (511)
T ss_pred hhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 333444444444443333333333344555666666 334444555555555555555555555
Q ss_pred HHHHHHHHHHHH----HHHHHhh----hh-cc------HHHHHHHHHHHHHHHHhhhhhhh
Q 023704 143 QEMIKDLNEING----DLAKARD----ES-KD------MAAIKAEIETERQEIHKGRAAIE 188 (278)
Q Consensus 143 qeL~~evq~Lek----DL~~~~~----d~-~k------l~~LkaEIe~LrqEl~~~raa~e 188 (278)
.++..+...+-+ =+..++. ++ .. ++.|+.|.+.++.+++.++..|+
T Consensus 238 ~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~ 298 (511)
T PF09787_consen 238 QQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIE 298 (511)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHH
Confidence 555533332222 2222222 11 11 78888888888888888887773
No 158
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=93.70 E-value=8.2 Score=38.46 Aligned_cols=137 Identities=18% Similarity=0.272 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-------------
Q 023704 68 LAATHVALKQELSLAEQELRHLSSVA----ASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDR------------- 130 (278)
Q Consensus 68 la~~~~~L~qEL~laqhEL~~l~~~i----~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~q------------- 130 (278)
+......|+++-...+--|..|.... ..++.|+|.-+-.|..|+.|||+|-|-. ...++|
T Consensus 163 lm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~L---q~KlDqpvs~p~~prdia~ 239 (552)
T KOG2129|consen 163 LMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYL---QKKLDQPVSTPSLPRDIAK 239 (552)
T ss_pred HHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCcccCCCchhhhhc
Confidence 44444455555444444343333222 3455667777888888888888884433 222222
Q ss_pred ---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHH
Q 023704 131 ---VRA-DIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIME 205 (278)
Q Consensus 131 ---lr~-ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~me 205 (278)
.+. +...+....+-|.++|.++.+++.+++.. .-|+-.+.+|=..++.|..++..-+ .+.||
T Consensus 240 ~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL-------------~~e~e 306 (552)
T KOG2129|consen 240 IPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKL-------------INELE 306 (552)
T ss_pred CccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-------------HHHHH
Confidence 111 22344455666778888888888887766 5566666666555555554443222 13455
Q ss_pred Hh--HHHHHHHHHHHHH
Q 023704 206 KN--IISVAQQIERLQA 220 (278)
Q Consensus 206 kn--l~~m~~e~eklra 220 (278)
+- |-.|-.|-|++-.
T Consensus 307 rRealcr~lsEsessle 323 (552)
T KOG2129|consen 307 RREALCRMLSESESSLE 323 (552)
T ss_pred HHHHHHHHhhhhhHHHH
Confidence 55 6667777776643
No 159
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.67 E-value=1.7 Score=39.12 Aligned_cols=26 Identities=4% Similarity=-0.014 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 128 LDRVRADIEKLCVIKQEMIKDLNEIN 153 (278)
Q Consensus 128 l~qlr~ei~~l~~~rqeL~~evq~Le 153 (278)
..+++.++..+......|.++...+.
T Consensus 141 n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 141 NQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 160
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=93.67 E-value=0.019 Score=60.10 Aligned_cols=25 Identities=12% Similarity=0.203 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHH
Q 023704 196 SNHEQREIMEKNIISVAQQIERLQA 220 (278)
Q Consensus 196 e~~eq~q~meknl~~m~~e~eklra 220 (278)
+.+.+...||+-......|+.+||.
T Consensus 254 ~ql~~i~~LE~en~~l~~Elk~Lr~ 278 (722)
T PF05557_consen 254 EQLAHIRELEKENRRLREELKHLRQ 278 (722)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 161
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.67 E-value=0.93 Score=40.76 Aligned_cols=26 Identities=12% Similarity=0.266 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhH
Q 023704 73 VALKQELSLAEQELRHLSSVAASVKA 98 (278)
Q Consensus 73 ~~L~qEL~laqhEL~~l~~~i~~~~a 98 (278)
..++..|...+.+|..+...+.....
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~ 114 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDN 114 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445566666666666655554443
No 162
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=93.62 E-value=3.7 Score=41.87 Aligned_cols=59 Identities=12% Similarity=0.148 Sum_probs=37.1
Q ss_pred hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhH
Q 023704 163 SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANA 225 (278)
Q Consensus 163 ~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael~n~ 225 (278)
+..+..+...++.+++++..+...-+ .-.++-++....++.+...|.++-+.|...+..
T Consensus 321 g~s~e~l~~~~~~l~~eL~~l~~~~~----~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~ 379 (563)
T TIGR00634 321 GASVEEVLEYAEKIKEELDQLDDSDE----SLEALEEEVDKLEEELDKAAVALSLIRRKAAER 379 (563)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777776544433 223344556666777777777777777776543
No 163
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=93.61 E-value=2.9 Score=36.13 Aligned_cols=91 Identities=11% Similarity=0.219 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhh-hccHHHHHHHH-HHHHHHHHhhhhhhhh
Q 023704 113 KLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGD-LAKARDE-SKDMAAIKAEI-ETERQEIHKGRAAIEC 189 (278)
Q Consensus 113 kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekD-L~~~~~d-~~kl~~LkaEI-e~LrqEl~~~raa~e~ 189 (278)
+++.++...+..+.|...++++.++ ...+...+.+.|..| -.+..++ ..+.+++.+++ ..|.++++......+
T Consensus 45 ~I~~~L~~Ae~~k~eAe~l~a~ye~---~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~~~~~~~~~~~~~~~- 120 (155)
T PRK06569 45 NIQDNITQADTLTIEVEKLNKYYNE---EIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKNSINQNIEDINLAAK- 120 (155)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4444455555555555555543333 222333334444444 4444445 55556666665 455666666666666
Q ss_pred hhhhchhhHHHHHHHHHhHH
Q 023704 190 EKKNRASNHEQREIMEKNII 209 (278)
Q Consensus 190 ekk~~~e~~eq~q~meknl~ 209 (278)
+-+.+..+++--|--|++
T Consensus 121 --~~~~~~~~~~i~~~~~i~ 138 (155)
T PRK06569 121 --QFRTNKSEAIIKLAVNII 138 (155)
T ss_pred --HHHHhHHHHHHHHHHHHH
Confidence 344444555555555544
No 164
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=93.39 E-value=13 Score=39.79 Aligned_cols=58 Identities=22% Similarity=0.283 Sum_probs=35.0
Q ss_pred HHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhhhhhHhHHHHHHHHH
Q 023704 51 IAIQHS-DIQSLLQDNQRLAATHVALKQELSLAEQELRHLS--------------SVAASVKAERDAEVRELY 108 (278)
Q Consensus 51 L~~q~~-eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~--------------~~i~~~~ae~e~~~r~l~ 108 (278)
|..||. -.+.-...+.+.-+...+|+++|+.+.+.--.+. +++...+-|+|..|.+.+
T Consensus 4 lvkqh~kvaeeav~gwekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~ 76 (769)
T PF05911_consen 4 LVKQHAKVAEEAVSGWEKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAV 76 (769)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 445555 3344456677777888888888887765544433 344455555666555553
No 165
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=93.36 E-value=4.2 Score=34.11 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=11.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 61 LLQDNQRLAATHVALKQELSLAEQELRHL 89 (278)
Q Consensus 61 ll~dnqrla~~~~~L~qEL~laqhEL~~l 89 (278)
+|...++-......|...+.....++..+
T Consensus 43 Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l 71 (151)
T PF11559_consen 43 LLQQRDRDMEQREDLSDKLRRLRSDIERL 71 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33333444444433333333333333333
No 166
>PRK11519 tyrosine kinase; Provisional
Probab=93.36 E-value=5.1 Score=42.17 Aligned_cols=33 Identities=12% Similarity=0.155 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhH
Q 023704 68 LAATHVALKQELSLAEQELRHLSSVAASVKAER 100 (278)
Q Consensus 68 la~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~ 100 (278)
...+..=|+++|...+.+|...+..+...+...
T Consensus 265 a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~ 297 (719)
T PRK11519 265 ASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDK 297 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334555677777777777777777777666654
No 167
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=93.35 E-value=5.7 Score=35.62 Aligned_cols=104 Identities=14% Similarity=0.187 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHhHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 023704 47 LEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAA-SVKAERDAEVRELYEKSLKLDAELRVIESMH 125 (278)
Q Consensus 47 Le~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~-~~~ae~e~~~r~l~~k~~kleaelr~~e~lk 125 (278)
|+.-+.....+|...-...-++.+....+++++..++..+.....+.. .++...|---|+. +.......
T Consensus 29 l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~A----------l~~k~~~~ 98 (219)
T TIGR02977 29 IRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAA----------LIEKQKAQ 98 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH----------HHHHHHHH
Confidence 333333333333333333444555566666777766666666644433 3444455555555 33333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023704 126 AELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (278)
Q Consensus 126 ~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~ 160 (278)
..+..+...+..+.....+|..++..|+..+.+++
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k 133 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQAKLAEAR 133 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444445555555554444443
No 168
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=93.35 E-value=5 Score=34.87 Aligned_cols=16 Identities=19% Similarity=0.464 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhHH
Q 023704 211 VAQQIERLQAELANAE 226 (278)
Q Consensus 211 m~~e~eklrael~n~~ 226 (278)
+..||..||++|+++.
T Consensus 136 i~~ei~~lr~~iE~~K 151 (177)
T PF07798_consen 136 IDTEIANLRTEIESLK 151 (177)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4557778888887765
No 169
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=93.34 E-value=6.9 Score=36.50 Aligned_cols=14 Identities=14% Similarity=0.188 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHh
Q 023704 211 VAQQIERLQAELAN 224 (278)
Q Consensus 211 m~~e~eklrael~n 224 (278)
.-..++..+..+.+
T Consensus 191 ~~~~l~~a~~~l~~ 204 (327)
T TIGR02971 191 ALEAVQQAEALLEL 204 (327)
T ss_pred HHHHHHHHHHHHhc
Confidence 33334444444433
No 170
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=93.31 E-value=6.3 Score=35.92 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 123 SMHAELDRVRADIEKLCVIKQEMIKDLN 150 (278)
Q Consensus 123 ~lk~El~qlr~ei~~l~~~rqeL~~evq 150 (278)
.++..+.+++.++........++...++
T Consensus 74 ~l~~~i~~~~~~i~~~r~~l~~~~~~l~ 101 (302)
T PF10186_consen 74 RLRERIERLRKRIEQKRERLEELRESLE 101 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 171
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=93.24 E-value=2.2 Score=39.89 Aligned_cols=66 Identities=14% Similarity=0.279 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccH----HHHHHHHHHHHHHHHhhhh
Q 023704 120 VIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDM----AAIKAEIETERQEIHKGRA 185 (278)
Q Consensus 120 ~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl----~~LkaEIe~LrqEl~~~ra 185 (278)
++..+..++.+.+..+..+.+....|.++|++-..||.+.+.-.+.| |+-..|-+.|-.||+++=.
T Consensus 170 ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~ 239 (267)
T PF10234_consen 170 AIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYE 239 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 36777888888888888888888888888888888888877654333 7777888888888776543
No 172
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=93.23 E-value=6.7 Score=36.04 Aligned_cols=110 Identities=21% Similarity=0.299 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 023704 46 HLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMH 125 (278)
Q Consensus 46 ~Le~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk 125 (278)
.|+.+|...+.+..+--......-.+...|..++..++.+-..|.........+ +..|-....+.+ ...+.|.
T Consensus 9 Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~----~~rL~~~~~~~~---eEk~~Le 81 (246)
T PF00769_consen 9 ELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEE----KQRLEEEAEMQE---EEKEQLE 81 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH---------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH---HHHHHHH
Confidence 455666665555555555555555555566666666666666655544332222 222322222222 2244555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023704 126 AELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE 162 (278)
Q Consensus 126 ~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d 162 (278)
.++..+..+|..|....+.-..++..+..++...+.+
T Consensus 82 ~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~ 118 (246)
T PF00769_consen 82 QELREAEAEIARLEEESERKEEEAEELQEELEEARED 118 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666655544
No 173
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=93.15 E-value=12 Score=38.80 Aligned_cols=95 Identities=19% Similarity=0.275 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Q 023704 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE------------SKDMAAIKAEIETERQEIHKGRAAIECEKKNR 194 (278)
Q Consensus 127 El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d------------~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~ 194 (278)
|+.-+-.++...++..-.|..++..|...+...+++ +++|.....+|..|-.++++.+++.-.| .
T Consensus 236 ev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e---~ 312 (629)
T KOG0963|consen 236 EVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEE---R 312 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 333344444444555555555555555555554433 2233444455555555555555554333 3
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 023704 195 ASNHEQREIMEKNIISVAQQIERLQAELAN 224 (278)
Q Consensus 195 ~e~~eq~q~meknl~~m~~e~eklrael~n 224 (278)
..+..|.++.|+-+-+.-.++|+|+..|.+
T Consensus 313 e~~~~qI~~le~~l~~~~~~leel~~kL~~ 342 (629)
T KOG0963|consen 313 EKHKAQISALEKELKAKISELEELKEKLNS 342 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345567888888888888888888877754
No 174
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=93.15 E-value=0.026 Score=60.41 Aligned_cols=107 Identities=15% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHH
Q 023704 125 HAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR----DESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQ 200 (278)
Q Consensus 125 k~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~----~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq 200 (278)
...|..+.+.+..-...+.++....+.|+.||.++. ..+.....+...|..+...|..+...++.....+-+..++
T Consensus 524 qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~ 603 (859)
T PF01576_consen 524 QRQLESLEAELEEERKERAEALREKKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQ 603 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 334444444444434444444444455555555443 1244456777888889999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhHHhhHHH
Q 023704 201 REIMEKNIISVAQQIERLQAELANAEKRARA 231 (278)
Q Consensus 201 ~q~meknl~~m~~e~eklrael~n~~~r~~a 231 (278)
...+|+-+..|..|++-|+..+..+++--+.
T Consensus 604 ~~~~e~r~~~l~~elee~~~~~~~a~r~rk~ 634 (859)
T PF01576_consen 604 LAVSERRLRALQAELEELREALEQAERARKQ 634 (859)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988754433
No 175
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=93.11 E-value=7 Score=35.88 Aligned_cols=140 Identities=18% Similarity=0.172 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHH
Q 023704 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIES 123 (278)
Q Consensus 44 ~~~Le~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~ 123 (278)
|..+.-.++....+++.........-.....+..++.....++..|......+ .+....
T Consensus 19 ~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~---------------------~~~~~~ 77 (264)
T PF06008_consen 19 PYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKV---------------------SRKAQQ 77 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHH
Confidence 34555555555555555555444444444444444554444554444433322 222334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhccHHHHHHHHHHHHHHH-----Hhhhhhhhhhhhh
Q 023704 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARD-----ESKDMAAIKAEIETERQEI-----HKGRAAIECEKKN 193 (278)
Q Consensus 124 lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~-----d~~kl~~LkaEIe~LrqEl-----~~~raa~e~ekk~ 193 (278)
+...........+.|....+.+...|..|-.++..+.. ....++...+|++.|=+++ ...+..-+.|++.
T Consensus 78 l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~ 157 (264)
T PF06008_consen 78 LNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKE 157 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 44444444445555555555555555555555555554 3667777777777776666 4556667778877
Q ss_pred chhhHHHHHHH
Q 023704 194 RASNHEQREIM 204 (278)
Q Consensus 194 ~~e~~eq~q~m 204 (278)
-.+++.+++.-
T Consensus 158 A~~LL~~v~~~ 168 (264)
T PF06008_consen 158 AEDLLSRVQKW 168 (264)
T ss_pred HHHHHHHHHHH
Confidence 77777777664
No 176
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=93.08 E-value=0.027 Score=58.99 Aligned_cols=101 Identities=20% Similarity=0.345 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhhh----------hccHHHHHHHHHHHHHHHH
Q 023704 122 ESMHAELDRVRADIEKLCVIKQEM----------IKDLNEINGDLAKARDE----------SKDMAAIKAEIETERQEIH 181 (278)
Q Consensus 122 e~lk~El~qlr~ei~~l~~~rqeL----------~~evq~LekDL~~~~~d----------~~kl~~LkaEIe~LrqEl~ 181 (278)
+.++.++..++.++++.....++| ..+|+.|+.++.....+ ...++.|.++...++.|+.
T Consensus 195 ~~l~~~le~~~~~~~e~e~~~~~L~~~q~~~~e~e~~i~~Le~el~~~~~~~~i~k~l~~ql~~i~~LE~en~~l~~Elk 274 (722)
T PF05557_consen 195 EELKEQLEELQSELQEAEQQLQELQASQASLAEAEQKIKELEAELKDQESDAEINKELKEQLAHIRELEKENRRLREELK 274 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444554444444444444 44555555544443332 3556777888888888888
Q ss_pred hhhhhh------hhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 023704 182 KGRAAI------ECEKKNRASNHEQREIMEKNIISVAQQIERLQAEL 222 (278)
Q Consensus 182 ~~raa~------e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael 222 (278)
++|... +.|+..-...++.+..++..|..+=-|+++|..|+
T Consensus 275 ~Lr~~~~n~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el 321 (722)
T PF05557_consen 275 HLRQSQENVELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDEL 321 (722)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777643 34555555555556666666666655666666655
No 177
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=93.07 E-value=1.8 Score=35.95 Aligned_cols=46 Identities=24% Similarity=0.291 Sum_probs=32.8
Q ss_pred hhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHh
Q 023704 182 KGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEK 227 (278)
Q Consensus 182 ~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael~n~~~ 227 (278)
....++++-++.-..+-+++..+++++.....+++.++..+.....
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666777777888888888888888888877755443
No 178
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=93.02 E-value=5.7 Score=37.23 Aligned_cols=97 Identities=18% Similarity=0.351 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 68 LAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIK 147 (278)
Q Consensus 68 la~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~ 147 (278)
+..--..|+.-+.....+++.++..+.++.++. - .||+. ++.-+.|++..+..++.|++.|--...
T Consensus 160 ~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de------~-----~Le~K---Iekkk~ELER~qKRL~sLq~vRPAfmd 225 (267)
T PF10234_consen 160 LNEIEKALKEAIKAVQQQLQQTQQQLNNLASDE------A-----NLEAK---IEKKKQELERNQKRLQSLQSVRPAFMD 225 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H-----HHHHH---HHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 334445666666777777777777777666665 1 33444 777789999999999999999999999
Q ss_pred HHHHHHHHHHHHhhh-hcc---HHHHHHHHHHHHH
Q 023704 148 DLNEINGDLAKARDE-SKD---MAAIKAEIETERQ 178 (278)
Q Consensus 148 evq~LekDL~~~~~d-~~k---l~~LkaEIe~Lrq 178 (278)
+-..++.||++.=.. ..| +.-|+.+++....
T Consensus 226 EyEklE~EL~~lY~~Y~~kfRNl~yLe~qle~~~~ 260 (267)
T PF10234_consen 226 EYEKLEEELQKLYEIYVEKFRNLDYLEHQLEEYNR 260 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999987766 555 5677777766543
No 179
>PF04626 DEC-1_C: Dec-1 protein, C terminal region; InterPro: IPR006720 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). Alternative splicing generates different carboxy terminal ends in different protein isoforms. This domain is the most C-terminal region that is present in the main isoforms.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=93.00 E-value=0.062 Score=44.23 Aligned_cols=29 Identities=34% Similarity=0.623 Sum_probs=24.4
Q ss_pred CCccccCCCCCCCCCCCCCCCCCCCccccCC
Q 023704 241 STSYAASYGNPDPGFGGSLYADPYSMHQVQG 271 (278)
Q Consensus 241 ~~~y~~~~gn~~~~~~~~~y~~~y~~~~~~~ 271 (278)
..+||.+|| +.||++|+||.+|+.|-++.
T Consensus 74 ~~sYgtsYg--~ggyGsnaYG~~~~~n~yqs 102 (132)
T PF04626_consen 74 VQSYGTSYG--GGGYGSNAYGVQRSVNSYQS 102 (132)
T ss_pred ecccceeec--CCcccccccCCCcCcccccc
Confidence 368888888 66999999999999997763
No 180
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=92.98 E-value=11 Score=38.00 Aligned_cols=99 Identities=9% Similarity=0.197 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHH
Q 023704 132 RADIEKLCVIKQEMIKDLNEINGDLAKARDE----------SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQR 201 (278)
Q Consensus 132 r~ei~~l~~~rqeL~~evq~LekDL~~~~~d----------~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~ 201 (278)
...+..+...+++|..+-+.|-.++=+-++. .+=|.-|+..|+..++.+. ..+..+.+.+..+.+|.
T Consensus 98 ~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~---~~~~~~~~~~~~L~~qi 174 (475)
T PRK10361 98 DDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQ---DSFGKEAQERHTLAHEI 174 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3334445555556666666665555443322 1113444444454444443 23345778889999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHh-HHhh-HHHHH
Q 023704 202 EIMEKNIISVAQQIERLQAELAN-AEKR-ARAAA 233 (278)
Q Consensus 202 q~meknl~~m~~e~eklrael~n-~~~r-~~a~~ 233 (278)
+.|-.--..|..|..+|--=|-. ...| .||-.
T Consensus 175 ~~L~~~n~~i~~ea~nLt~ALkgd~K~rG~WGE~ 208 (475)
T PRK10361 175 RNLQQLNAQMAQEAINLTRALKGDNKTQGNWGEV 208 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCcCcchHHH
Confidence 88877778888899888777743 3444 45543
No 181
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=92.96 E-value=11 Score=38.05 Aligned_cols=85 Identities=13% Similarity=0.170 Sum_probs=52.6
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhh
Q 023704 110 KSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIE 188 (278)
Q Consensus 110 k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~raa~e 188 (278)
+.....+.+......+.++.+++.++..+.....++..+...++..+..-+.. ..|+..|..--+.|+.+...+-..|=
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~il 123 (475)
T PRK10361 44 ELSAAKQQITQSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIF 123 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555566666666666666666666666777777777666665544 55666666666667777766666665
Q ss_pred hhhhhc
Q 023704 189 CEKKNR 194 (278)
Q Consensus 189 ~ekk~~ 194 (278)
.+|...
T Consensus 124 e~k~~~ 129 (475)
T PRK10361 124 EHSNRR 129 (475)
T ss_pred HHHHHH
Confidence 555443
No 182
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=92.88 E-value=3.4 Score=38.56 Aligned_cols=80 Identities=10% Similarity=0.108 Sum_probs=39.8
Q ss_pred EeecCC-----CcccccCCccCCCCC------------CCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 023704 10 TTLHNH-----SQFTMSGRRVLREPP------------LSTRALPPQHSPSLHHLEDRIAIQHSDIQSLLQDNQRLAATH 72 (278)
Q Consensus 10 vtfhp~-----~svTleGD~ydpeG~------------LsGGs~p~~~~~l~~~Le~~L~~q~~eIq~ll~dnqrla~~~ 72 (278)
+||..+ -+||-+|+.-.|... |+=|.++ +++.++.+........+-|+....+...
T Consensus 94 lTC~~~~~s~Gv~l~fnGlddepG~~IVDC~~~~~isdLgv~vg~--g~v~~~~~~~~~~ekd~~i~~~~~~~e~----- 166 (264)
T PF07246_consen 94 LTCIGSLGSEGVSLDFNGLDDEPGHNIVDCDTFKIISDLGVGVGD--GRVDYEELKKEAEEKDQLIKEKTQEREN----- 166 (264)
T ss_pred eeecCCCCcceeEEecCCCCCCCCCeeEecCCCCEeeeccccccc--ccccHHHHHHHHHHHHHHHHHHhhchhh-----
Confidence 566554 677778875444332 2222222 2344555555543333334433222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHh
Q 023704 73 VALKQELSLAEQELRHLSSVAASVKAE 99 (278)
Q Consensus 73 ~~L~qEL~laqhEL~~l~~~i~~~~ae 99 (278)
..+-+.++|+++.+...+.+.+.+
T Consensus 167 ---d~rnq~l~~~i~~l~~~l~~~~~~ 190 (264)
T PF07246_consen 167 ---DRRNQILSHEISNLTNELSNLRND 190 (264)
T ss_pred ---hhHHHHHHHHHHHhhhhHHHhhch
Confidence 344455567777776666655555
No 183
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.86 E-value=12 Score=37.73 Aligned_cols=41 Identities=20% Similarity=0.273 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAK 158 (278)
Q Consensus 118 lr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~ 158 (278)
.+++.++-..|...+.||.+......+|..++.++..-|++
T Consensus 388 tqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~R 428 (521)
T KOG1937|consen 388 TQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNR 428 (521)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555666666666666666666666666666666666555
No 184
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=92.84 E-value=5.1 Score=37.75 Aligned_cols=71 Identities=17% Similarity=0.277 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhhh--hccHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 023704 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAK--ARDE--SKDMAAIKAEIETERQEIHKGRAAIECEK 191 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~--~~~d--~~kl~~LkaEIe~LrqEl~~~raa~e~ek 191 (278)
++.-+.++..+.-|.+.|...+..|...-+.|..|+.- .+-. ..++...+..|+.|-+++.+++..+|--.
T Consensus 55 ~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ 129 (307)
T PF10481_consen 55 VEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQ 129 (307)
T ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445555555555444555444432 1111 34555666666666666666666555443
No 185
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=92.84 E-value=11 Score=37.49 Aligned_cols=83 Identities=22% Similarity=0.257 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhccHHHHHHHHH----HHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHH
Q 023704 144 EMIKDLNEINGDLAKARDESKDMAAIKAEIE----TERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQ 219 (278)
Q Consensus 144 eL~~evq~LekDL~~~~~d~~kl~~LkaEIe----~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklr 219 (278)
++...+..|.+++..+..-.+.+.+=+++++ ..+.+..++...++.=||+...+--+++.=++.+-.+...-..|+
T Consensus 158 ~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~ 237 (420)
T COG4942 158 ARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLK 237 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3334444444444444333344444444443 444555555556666666666666677777777777888888888
Q ss_pred HHHHhHH
Q 023704 220 AELANAE 226 (278)
Q Consensus 220 ael~n~~ 226 (278)
.+|+.++
T Consensus 238 ~~Ias~e 244 (420)
T COG4942 238 NEIASAE 244 (420)
T ss_pred HHHHHHH
Confidence 8898888
No 186
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=92.81 E-value=13 Score=38.15 Aligned_cols=82 Identities=15% Similarity=0.193 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHhhh--hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 023704 145 MIKDLNEINGDLAKARDE--SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAEL 222 (278)
Q Consensus 145 L~~evq~LekDL~~~~~d--~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael 222 (278)
+..+++.+++.+...... .-.+...+..++.+..+|..+-..+|.|-+++..--+....+..-+-.+......|..|+
T Consensus 250 i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~ 329 (560)
T PF06160_consen 250 IEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEEL 329 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666666655 346788888889999999999999999999998888888888888888888777777777
Q ss_pred HhHH
Q 023704 223 ANAE 226 (278)
Q Consensus 223 ~n~~ 226 (278)
....
T Consensus 330 ~~v~ 333 (560)
T PF06160_consen 330 ERVS 333 (560)
T ss_pred HHHH
Confidence 5443
No 187
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=92.78 E-value=8.6 Score=36.06 Aligned_cols=106 Identities=12% Similarity=0.190 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHhhh--hccHHHHHHHHHHHHHHHHhhhhhh
Q 023704 122 ESMHAELDRVRADIEKLCVI------------KQEMIKDLNEINGDLAKARDE--SKDMAAIKAEIETERQEIHKGRAAI 187 (278)
Q Consensus 122 e~lk~El~qlr~ei~~l~~~------------rqeL~~evq~LekDL~~~~~d--~~kl~~LkaEIe~LrqEl~~~raa~ 187 (278)
.-+|.+|.+-...++++... -+.|.+++..|.++=.++..- ..+|..|..|+---+..-..+++.+
T Consensus 180 ~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq 259 (330)
T KOG2991|consen 180 LRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQ 259 (330)
T ss_pred HHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhH
Confidence 45666666666666665543 467889999999888888766 6789999999977777777788888
Q ss_pred hhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHh
Q 023704 188 ECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEK 227 (278)
Q Consensus 188 e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael~n~~~ 227 (278)
+..-+--.++-+-+..|...++-+-.+++.-|-||...+|
T Consensus 260 ~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k 299 (330)
T KOG2991|consen 260 EELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKK 299 (330)
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888777777765553
No 188
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=92.74 E-value=1.4 Score=37.79 Aligned_cols=63 Identities=17% Similarity=0.393 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhh
Q 023704 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRA 185 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~ra 185 (278)
...+..+|.+++.++..+....+.|.+++..|.+.+.- .+ ..++..|+.|++.|...|..++.
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~--~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTN--EELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555555555555555555555555543322 11 33444555555555555554443
No 189
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=92.74 E-value=0.88 Score=39.07 Aligned_cols=66 Identities=14% Similarity=0.272 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhh
Q 023704 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAI 187 (278)
Q Consensus 122 e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~ 187 (278)
.....++...+.++..+...+..|..++....+.|..|+....-..+|+++|+.|+.+.......+
T Consensus 9 ~~~gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~ 74 (155)
T PF06810_consen 9 AENGKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEY 74 (155)
T ss_pred HHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666777777888888889999999999999998888888899999999988887544443
No 190
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=92.66 E-value=14 Score=38.32 Aligned_cols=79 Identities=22% Similarity=0.345 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh----hccHHHHHHHHHHHHHHHHhhhhhh-----hhhh--h--hchhhHHHHHHHHHh
Q 023704 141 IKQEMIKDLNEINGDLAKARDE----SKDMAAIKAEIETERQEIHKGRAAI-----ECEK--K--NRASNHEQREIMEKN 207 (278)
Q Consensus 141 ~rqeL~~evq~LekDL~~~~~d----~~kl~~LkaEIe~LrqEl~~~raa~-----e~ek--k--~~~e~~eq~q~mekn 207 (278)
.|..|..++..+......-..+ ..+++.++.+++.+..|++.....+ +||+ | -+..-+...-.|-+|
T Consensus 420 ~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~N 499 (594)
T PF05667_consen 420 HRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKN 499 (594)
T ss_pred HHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 3445555555555433322222 2334455555555544444433322 2332 1 123334444555555
Q ss_pred HHHHHHHHHHHH
Q 023704 208 IISVAQQIERLQ 219 (278)
Q Consensus 208 l~~m~~e~eklr 219 (278)
+=-=-.||+|.-
T Consensus 500 I~KQk~eI~KIl 511 (594)
T PF05667_consen 500 IRKQKEEIEKIL 511 (594)
T ss_pred HHHHHHHHHHHH
Confidence 544444444433
No 191
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=92.66 E-value=5.2 Score=36.47 Aligned_cols=50 Identities=18% Similarity=0.363 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHH
Q 023704 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEI 173 (278)
Q Consensus 124 lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEI 173 (278)
+..++.++..++..|....+.+...|...+++|.+++.....+...+.+|
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l 103 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL 103 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444433343333333
No 192
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=92.65 E-value=15 Score=38.59 Aligned_cols=35 Identities=17% Similarity=0.150 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhH
Q 023704 66 QRLAATHVALKQELSLAEQELRHLSSVAASVKAER 100 (278)
Q Consensus 66 qrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~ 100 (278)
+.......-|..+|...+.+|...+..+...+...
T Consensus 190 ~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~ 224 (754)
T TIGR01005 190 ESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQS 224 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33445666788888888888888888888887754
No 193
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=92.65 E-value=5.1 Score=33.15 Aligned_cols=63 Identities=14% Similarity=0.390 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHH
Q 023704 117 ELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQE 179 (278)
Q Consensus 117 elr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqE 179 (278)
+++.+..+|.++..++.++..+..........+...+.....-... ...+..++..++.|..+
T Consensus 57 ~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~Q 120 (132)
T PF07926_consen 57 DIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQ 120 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666666666666666555555544444 44555555555555443
No 194
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=92.60 E-value=18 Score=39.20 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 023704 46 HLEDRIAIQHSDIQSLLQDNQRLAATH 72 (278)
Q Consensus 46 ~Le~~L~~q~~eIq~ll~dnqrla~~~ 72 (278)
.+-.+++.....+.+.....++...++
T Consensus 337 ~~~~e~~~~~~~l~~~~~ear~~~~q~ 363 (980)
T KOG0980|consen 337 QLSREVAQLKAQLENLKEEARRRIEQY 363 (980)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 333333333334444444444444443
No 195
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=92.60 E-value=21 Score=40.01 Aligned_cols=38 Identities=26% Similarity=0.302 Sum_probs=27.3
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHhhHHHH
Q 023704 195 ASNHEQREIMEKNIISVAQQIERLQAELANAEKRARAA 232 (278)
Q Consensus 195 ~e~~eq~q~meknl~~m~~e~eklrael~n~~~r~~a~ 232 (278)
.+.+..++-||-.+.+=-+-++.+-+||+-.++|-+..
T Consensus 1706 ~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~v 1743 (1758)
T KOG0994|consen 1706 NEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESV 1743 (1758)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH
Confidence 44555666666666666678888888998888886654
No 196
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=92.55 E-value=9.2 Score=40.61 Aligned_cols=79 Identities=22% Similarity=0.175 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHH--H--
Q 023704 47 LEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVI--E-- 122 (278)
Q Consensus 47 Le~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~--e-- 122 (278)
|.++|+.+..|+...+. -|..+..|+..|...+.|++..+.... .--..|.||+.||-.|+... +
T Consensus 460 L~e~IeKLk~E~d~e~S----~A~~~~gLk~kL~~Lr~E~sKa~~~~~-------~~~~~L~eK~~kLk~Efnkkl~ea~ 528 (762)
T PLN03229 460 LNEMIEKLKKEIDLEYT----EAVIAMGLQERLENLREEFSKANSQDQ-------LMHPVLMEKIEKLKDEFNKRLSRAP 528 (762)
T ss_pred HHHHHHHHHHHHHHHHH----HhhhhhhHHHHHHHHHHHHHhcccccc-------cccHHHHHHHHHHHHHHHHhhhccc
Confidence 56666666666555443 456777888888888877777532110 11122555566665554221 2
Q ss_pred ---HHHHHHHHHHHHHH
Q 023704 123 ---SMHAELDRVRADIE 136 (278)
Q Consensus 123 ---~lk~El~qlr~ei~ 136 (278)
.++..++-|++..+
T Consensus 529 n~p~lk~Kle~Lk~~~~ 545 (762)
T PLN03229 529 NYLSLKYKLDMLNEFSR 545 (762)
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 45555555555554
No 197
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=92.54 E-value=14 Score=37.76 Aligned_cols=141 Identities=21% Similarity=0.265 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHH
Q 023704 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIES 123 (278)
Q Consensus 44 ~~~Le~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~ 123 (278)
...|.++..+....+..+..+..-|.+...+|+..|..-.+ .|..++.....+.+--+|..++++...-.+
T Consensus 339 ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEq---tL~~rL~e~~~e~~~~~r~~lekl~~~q~e------ 409 (531)
T PF15450_consen 339 LDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQ---TLNLRLSEAKNEWESDERKSLEKLDQWQNE------ 409 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 56778888888888888888888888888999998776555 455667777777777777774544333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchh
Q 023704 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRAS 196 (278)
Q Consensus 124 lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e 196 (278)
+.+.+..++..+..+-....++..++..+..|+.- - ...-++..-+|..+|+||..+-..+-|-|-+++-
T Consensus 410 ~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~---kIdtE~k~R~~eV~~vRqELa~lLssvQ~~~e~~~~ 480 (531)
T PF15450_consen 410 MEKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDT---KIDTEGKAREREVGAVRQELATLLSSVQLLKEDNPG 480 (531)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhh---hccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh
Confidence 33333344444444444455555555555544332 2 4445788899999999999999999998877765
No 198
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=92.45 E-value=18 Score=39.06 Aligned_cols=64 Identities=19% Similarity=0.211 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHH
Q 023704 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVREL 107 (278)
Q Consensus 44 ~~~Le~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l 107 (278)
.+.+|+.+...+..|+-+-..++++-.+..+||.-++.++.++.-.+-.+.+..+.-+..+.+|
T Consensus 94 v~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eL 157 (1265)
T KOG0976|consen 94 VNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDEL 157 (1265)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5678888887777777777777777777777777777777777777777766666654444444
No 199
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=92.44 E-value=2.1 Score=32.03 Aligned_cols=62 Identities=19% Similarity=0.273 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhh
Q 023704 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRA 185 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~ra 185 (278)
+..++..+..+...+.......+.|..+=.....-|... -..+..|+.|++.|++|+.+.+.
T Consensus 7 ~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a---~~e~~~Lk~E~e~L~~el~~~r~ 68 (69)
T PF14197_consen 7 IATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDA---YEENNKLKEENEALRKELEELRA 68 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhc
Confidence 444555555555555544444444444333333333322 23345577777777777766553
No 200
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=92.43 E-value=14 Score=37.64 Aligned_cols=13 Identities=15% Similarity=0.325 Sum_probs=5.8
Q ss_pred HHhHHHHHHHHHH
Q 023704 205 EKNIISVAQQIER 217 (278)
Q Consensus 205 eknl~~m~~e~ek 217 (278)
......|.+++|+
T Consensus 162 ~~~~~~~~~~~~~ 174 (514)
T TIGR03319 162 RHEAAKLIKEIEE 174 (514)
T ss_pred HHHHHHHHHHHHH
Confidence 3344445554443
No 201
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=92.32 E-value=5.1 Score=37.71 Aligned_cols=93 Identities=22% Similarity=0.286 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHH-----
Q 023704 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQR----- 201 (278)
Q Consensus 127 El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~----- 201 (278)
.|+.+...+++|..+++.=.=++..++.-|++ --+|.+.-+.++-.|+.|.+.+...|+..-|.+..+..-+
T Consensus 19 KIqelE~QldkLkKE~qQrQfQleSlEAaLqK---QKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~ 95 (307)
T PF10481_consen 19 KIQELEQQLDKLKKERQQRQFQLESLEAALQK---QKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKES 95 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHH
Confidence 44444555555555555555666666665554 3566777777777788888888888877777776665433
Q ss_pred --HHHHHhHHHHHHHHHHHHHHH
Q 023704 202 --EIMEKNIISVAQQIERLQAEL 222 (278)
Q Consensus 202 --q~meknl~~m~~e~eklrael 222 (278)
.-+|.-|.+--..||+|-.||
T Consensus 96 qv~~lEgQl~s~Kkqie~Leqel 118 (307)
T PF10481_consen 96 QVNFLEGQLNSCKKQIEKLEQEL 118 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344545555555555555544
No 202
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.23 E-value=16 Score=37.80 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 65 NQRLAATHVALKQELSLAEQELRHLSS 91 (278)
Q Consensus 65 nqrla~~~~~L~qEL~laqhEL~~l~~ 91 (278)
+.-+-+.+..++.||+..+.-+.-...
T Consensus 52 ~eEleaeyd~~R~Eldqtkeal~q~~s 78 (772)
T KOG0999|consen 52 LEELEAEYDLARTELDQTKEALGQYRS 78 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666667777777666655433
No 203
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=92.10 E-value=7.6 Score=41.09 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023704 44 LHHLEDRIAIQHSDIQSL 61 (278)
Q Consensus 44 ~~~Le~~L~~q~~eIq~l 61 (278)
...||..|+.+.+++.-.
T Consensus 93 ndklE~~Lankda~lrq~ 110 (916)
T KOG0249|consen 93 NDKLENELANKDADLRQN 110 (916)
T ss_pred hHHHHHHHhCcchhhchh
Confidence 456777777666644433
No 204
>PF15294 Leu_zip: Leucine zipper
Probab=92.07 E-value=11 Score=35.58 Aligned_cols=81 Identities=19% Similarity=0.295 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhh-----hhhhhhchhhHHHHHHHHHhHHHHHHH
Q 023704 141 IKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAI-----ECEKKNRASNHEQREIMEKNIISVAQQ 214 (278)
Q Consensus 141 ~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~raa~-----e~ekk~~~e~~eq~q~meknl~~m~~e 214 (278)
...+|..++..+..++.+.-.| .+..+.|+..|...++++-+..... +.|||.+. .-+-.-|-+=|..=.-+
T Consensus 191 ~l~dLE~k~a~lK~e~ek~~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLekKfqq--T~ay~NMk~~ltkKn~Q 268 (278)
T PF15294_consen 191 DLSDLENKMAALKSELEKALQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEKKFQQ--TAAYRNMKEILTKKNEQ 268 (278)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHHHhCc--cHHHHHhHHHHHhccHH
Confidence 3455677788888888887777 7788999999999998888877664 56676653 45555554444444447
Q ss_pred HHHHHHHHH
Q 023704 215 IERLQAELA 223 (278)
Q Consensus 215 ~eklrael~ 223 (278)
|--||-.|.
T Consensus 269 iKeLRkrl~ 277 (278)
T PF15294_consen 269 IKELRKRLA 277 (278)
T ss_pred HHHHHHHhc
Confidence 777776653
No 205
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=92.05 E-value=6.3 Score=36.45 Aligned_cols=43 Identities=19% Similarity=0.259 Sum_probs=31.8
Q ss_pred hhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHhhHH
Q 023704 188 ECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKRAR 230 (278)
Q Consensus 188 e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael~n~~~r~~ 230 (278)
|--|.-+.|+=+++....+.+..+-+||++||++=.+-=.+-|
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445667777788888888888899999999999655533343
No 206
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=92.02 E-value=11 Score=35.39 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHH
Q 023704 75 LKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRV 120 (278)
Q Consensus 75 L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~ 120 (278)
|+..+-.++-+.++|..-...++--.|.|.-..|...-.||-|+.-
T Consensus 57 ~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsq 102 (333)
T KOG1853|consen 57 LETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQ 102 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444445555566666666666666666433
No 207
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=91.99 E-value=0.94 Score=46.53 Aligned_cols=61 Identities=25% Similarity=0.367 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhh
Q 023704 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIE 188 (278)
Q Consensus 118 lr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e 188 (278)
.|.+.+++.=+..+..|+.++.+.||+|..+|..+. .|+.+|+.+|..-++||..+...||
T Consensus 78 ~r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n----------~kiEelk~~i~~~q~eL~~Lk~~ie 138 (907)
T KOG2264|consen 78 GRILREQKRILASVSLELTELEVKRQELNSEIEEIN----------TKIEELKRLIPQKQLELSALKGEIE 138 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----------HHHHHHHHHHHHhHHHHHHHHhHHH
Confidence 444566666666778888888889999988887765 5666677777777777777666555
No 208
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=91.92 E-value=9.2 Score=36.14 Aligned_cols=86 Identities=19% Similarity=0.281 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 78 ELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLA 157 (278)
Q Consensus 78 EL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~ 157 (278)
.|.--.-||.-|..++...+.+= |-|-.-+.||.|. ..+.++||.||+.-|+.+....-+--.-||+-=.||
T Consensus 83 ~l~dRetEI~eLksQL~RMrEDW------IEEECHRVEAQLA-LKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDI- 154 (305)
T PF15290_consen 83 RLHDRETEIDELKSQLARMREDW------IEEECHRVEAQLA-LKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDI- 154 (305)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhh-
Confidence 33344555556666666555555 6666777788875 445556888888877775554433322233322232
Q ss_pred HHhhhhccHHHHHHHH
Q 023704 158 KARDESKDMAAIKAEI 173 (278)
Q Consensus 158 ~~~~d~~kl~~LkaEI 173 (278)
+-.+.||..|-.-.
T Consensus 155 --NiQN~KLEsLLqsM 168 (305)
T PF15290_consen 155 --NIQNKKLESLLQSM 168 (305)
T ss_pred --hhhHhHHHHHHHHH
Confidence 22355555554433
No 209
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=91.87 E-value=11 Score=36.68 Aligned_cols=86 Identities=19% Similarity=0.307 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh--hHhHHHHHHHHHHHhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 74 ALKQELSLAEQELRHLSSVAASV--KAERDAEVRELYEKSLKLDAELRV----IESMHAELDRVRADIEKLCVIKQEMIK 147 (278)
Q Consensus 74 ~L~qEL~laqhEL~~l~~~i~~~--~ae~e~~~r~l~~k~~kleaelr~----~e~lk~El~qlr~ei~~l~~~rqeL~~ 147 (278)
.+.+.|....+++..+...-... ..+.+..|-+||+..-+++.=.-. ++-|+ -|..+|.++.........|..
T Consensus 265 ~i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~-tL~~lH~~a~~~~~~l~~le~ 343 (388)
T PF04912_consen 265 SIERRLKSLLSELEELAEKRKEAKEDAEQESKIDELYEILPRWDPYAPSLPSLVERLK-TLKSLHEEAAEFSQTLSELES 343 (388)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443322222 345577788888888887765322 23332 444555555555555555555
Q ss_pred HHHHHHHHHHHHh
Q 023704 148 DLNEINGDLAKAR 160 (278)
Q Consensus 148 evq~LekDL~~~~ 160 (278)
....|..+|..|.
T Consensus 344 ~q~~l~~~l~~~~ 356 (388)
T PF04912_consen 344 QQSDLQSQLKKWE 356 (388)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555544443
No 210
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=91.75 E-value=8.8 Score=33.90 Aligned_cols=66 Identities=15% Similarity=0.248 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhh
Q 023704 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIE 188 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e 188 (278)
...+..+|..+..++..|.....++..++..+++...+... ...+....||+.|+...+++++.++
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~--~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQ--EEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666677777777777777777777777777665554332 2334456666666666666665543
No 211
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=91.66 E-value=1.5 Score=40.46 Aligned_cols=41 Identities=17% Similarity=0.251 Sum_probs=35.6
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHH
Q 023704 164 KDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIM 204 (278)
Q Consensus 164 ~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~m 204 (278)
++..+|++|+..+++++..++..++--|+-|..++|..+=+
T Consensus 93 ~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 93 QRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYL 133 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999999999999999999987763
No 212
>PRK11546 zraP zinc resistance protein; Provisional
Probab=91.39 E-value=1.4 Score=37.52 Aligned_cols=40 Identities=25% Similarity=0.267 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhh
Q 023704 148 DLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAI 187 (278)
Q Consensus 148 evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~ 187 (278)
+-..|...+..-..|.++|.+|..||..|+.+|...|..+
T Consensus 73 Kr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~ 112 (143)
T PRK11546 73 KRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKR 112 (143)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455556678899999999999999888777643
No 213
>PRK12704 phosphodiesterase; Provisional
Probab=91.33 E-value=19 Score=36.81 Aligned_cols=13 Identities=15% Similarity=0.296 Sum_probs=5.9
Q ss_pred HHhHHHHHHHHHH
Q 023704 205 EKNIISVAQQIER 217 (278)
Q Consensus 205 eknl~~m~~e~ek 217 (278)
......|.+++|.
T Consensus 168 ~~~~~~~~~~~~~ 180 (520)
T PRK12704 168 RHEAAVLIKEIEE 180 (520)
T ss_pred HHHHHHHHHHHHH
Confidence 3344445555443
No 214
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=91.22 E-value=8.5 Score=32.68 Aligned_cols=36 Identities=22% Similarity=0.236 Sum_probs=24.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 023704 63 QDNQRLAATHVALKQELSLAEQELRHLSSVAASVKA 98 (278)
Q Consensus 63 ~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~a 98 (278)
-+...+...+.+|.+.|....|-|..|+..+....+
T Consensus 20 ~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~ 55 (160)
T PF13094_consen 20 FDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEA 55 (160)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777777777776664433
No 215
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=91.11 E-value=30 Score=38.81 Aligned_cols=51 Identities=22% Similarity=0.290 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhH---HHHHHHHHHHhhhhH
Q 023704 65 NQRLAATHVALKQELSLAEQELRHLSSVAASVKAER---DAEVRELYEKSLKLD 115 (278)
Q Consensus 65 nqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~---e~~~r~l~~k~~kle 115 (278)
.++......+-++..+....+|+.|-..+.++-... -.+|+++.++.++||
T Consensus 1452 Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~ 1505 (1758)
T KOG0994|consen 1452 AQRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALE 1505 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcc
Confidence 344555566667777777777777777666544332 345666666666554
No 216
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.98 E-value=21 Score=38.43 Aligned_cols=29 Identities=24% Similarity=0.196 Sum_probs=22.5
Q ss_pred hhhhhchhhHHHHHHHHHhHHHHHHHHHH
Q 023704 189 CEKKNRASNHEQREIMEKNIISVAQQIER 217 (278)
Q Consensus 189 ~ekk~~~e~~eq~q~meknl~~m~~e~ek 217 (278)
.+.++.++.++.+..-++|+..-+.-|++
T Consensus 827 ~~tsa~a~~le~m~~~~~~la~e~~~ieq 855 (970)
T KOG0946|consen 827 ERTSAAADSLESMGSTEKNLANELKLIEQ 855 (970)
T ss_pred HHHHhhhhhhHHhhccccchhhHHHHHHH
Confidence 35578888888888888888777766666
No 217
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.95 E-value=25 Score=37.63 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=23.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhH
Q 023704 198 HEQREIMEKNIISVAQQIERLQAELANA 225 (278)
Q Consensus 198 ~eq~q~meknl~~m~~e~eklrael~n~ 225 (278)
.++.+-+.|-+.....++-.||.+|..+
T Consensus 775 ~~~r~~LqkrIDa~na~Lrrl~~~Iig~ 802 (1104)
T COG4913 775 IEHRRQLQKRIDAVNARLRRLREEIIGR 802 (1104)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 5677888889999999999999998654
No 218
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=90.92 E-value=2.8 Score=33.13 Aligned_cols=66 Identities=18% Similarity=0.348 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhh
Q 023704 114 LDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAA 186 (278)
Q Consensus 114 leaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa 186 (278)
...++..+-.+-.+..++..+++.+.+.+..++.+|..+.+. +....+|++++..++.++..+...
T Consensus 24 ~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~-------~~~~~~l~~e~~~lk~~i~~le~~ 89 (108)
T PF02403_consen 24 DEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKA-------GEDAEELKAEVKELKEEIKELEEQ 89 (108)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHT-------TCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred CHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhC-------cccHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666666667777777777777777666666542 334445555555555555444433
No 219
>PRK10869 recombination and repair protein; Provisional
Probab=90.88 E-value=15 Score=37.63 Aligned_cols=67 Identities=7% Similarity=-0.007 Sum_probs=45.3
Q ss_pred HHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 023704 154 GDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELAN 224 (278)
Q Consensus 154 kDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael~n 224 (278)
..+.++... +.-+.++.+-.+.+++++..+...-+. ..++-.+....++.|...|.++-+.|-+.|.
T Consensus 306 ~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~----l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~ 373 (553)
T PRK10869 306 SKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDD----LETLALAVEKHHQQALETAQKLHQSRQRYAK 373 (553)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555 667888888888888888776554433 3345566777778888888888777776543
No 220
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=90.85 E-value=17 Score=35.47 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=13.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Q 023704 201 REIMEKNIISVAQQIERLQAELA 223 (278)
Q Consensus 201 ~q~meknl~~m~~e~eklrael~ 223 (278)
....+..+.....++..++.++.
T Consensus 229 ~~~~~~~l~~~~~~l~~~~~~l~ 251 (421)
T TIGR03794 229 LETVEARIKEARYEIEELENKLN 251 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555566666666666664
No 221
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=90.70 E-value=0.073 Score=55.72 Aligned_cols=125 Identities=17% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhH----------------HHHHHHHHHHhhhhHHHHHHHH
Q 023704 59 QSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAER----------------DAEVRELYEKSLKLDAELRVIE 122 (278)
Q Consensus 59 q~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~----------------e~~~r~l~~k~~kleaelr~~e 122 (278)
+....+....+....+|+.||+..+|.-..+...-..+..-+ +.+.+.++++...||.++++..
T Consensus 280 ~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~ 359 (713)
T PF05622_consen 280 RQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKAR 359 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 333445566778889999999998886655433222222211 4455667888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhh
Q 023704 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAA 186 (278)
Q Consensus 123 ~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa 186 (278)
.++.++..++..|.+|.....+...++..+..++..+.. ++..|..+.+.+..+...++..
T Consensus 360 ~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~e---k~~~l~~eke~l~~e~~~L~e~ 420 (713)
T PF05622_consen 360 ALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEE---KLEALEEEKERLQEERDSLRET 420 (713)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888888888888877777666543 3334444444444444444433
No 222
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=90.64 E-value=11 Score=37.33 Aligned_cols=48 Identities=10% Similarity=0.113 Sum_probs=25.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 105 RELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGD 155 (278)
Q Consensus 105 r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekD 155 (278)
+.+..+..+.|.+ +..++.|..|+..+.-...+..+-++.++..++.+
T Consensus 44 ~ai~a~~~~~E~~---l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~ 91 (459)
T KOG0288|consen 44 RAIKAKLQEKELE---LNRLQEENTQLNEERVREEATEKTLTVDVLIAENL 91 (459)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4454555555555 33445556666655555555555555555555544
No 223
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=90.62 E-value=19 Score=35.75 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=17.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023704 201 REIMEKNIISVAQQIERLQAELANAE 226 (278)
Q Consensus 201 ~q~meknl~~m~~e~eklrael~n~~ 226 (278)
+.+-|.-+-=+.+||.-||-||..+-
T Consensus 514 LRVKEsEiQYLKqEissLkDELQtal 539 (593)
T KOG4807|consen 514 LRVKESEIQYLKQEISSLKDELQTAL 539 (593)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556667778888888887663
No 224
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=90.61 E-value=13 Score=33.80 Aligned_cols=131 Identities=14% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 023704 82 AEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAK--- 158 (278)
Q Consensus 82 aqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~--- 158 (278)
....|..+..++.++...- -.++-.+=+.+-.+...++..|..+...|+.-...|.+....++..-...-.
T Consensus 3 ~~~KL~~i~e~~~~f~~~l------e~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~ 76 (247)
T PF06705_consen 3 TKSKLASINERFSGFESDL------ENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQ 76 (247)
T ss_pred hHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --Hhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 023704 159 --ARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELAN 224 (278)
Q Consensus 159 --~~~d-~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael~n 224 (278)
+.+. ..+...+..-++.|-..+..+...+..|+....... |.+..++.++|..|+.-+.+
T Consensus 77 ~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~i------e~~~~~l~~~l~~l~~~~~~ 139 (247)
T PF06705_consen 77 ERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDI------EELNQELVRELNELQEAFEN 139 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH------HHHHHHHHHHHHHHHHHHHH
No 225
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=90.60 E-value=8.9 Score=36.54 Aligned_cols=97 Identities=21% Similarity=0.373 Sum_probs=59.2
Q ss_pred HHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 023704 57 DIQSLLQDNQRLAAT----HVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVR 132 (278)
Q Consensus 57 eIq~ll~dnqrla~~----~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr 132 (278)
-|++.+.|.||.... .+.|+.|++..--.| .+.+..++.- | +.+=.+|-+|++.++
T Consensus 154 nIEKSvKDLqRctvSL~RYr~~lkee~d~S~k~i---k~~F~~l~~c-------L----------~dREvaLl~EmdkVK 213 (302)
T PF07139_consen 154 NIEKSVKDLQRCTVSLTRYRVVLKEEMDSSIKKI---KQTFAELQSC-------L----------MDREVALLAEMDKVK 213 (302)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH---HHHHHHHHHH-------H----------HHHHHHHHHHHHHHH
Confidence 688888888875433 344555554443322 2223322221 3 344456778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHH
Q 023704 133 ADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIET 175 (278)
Q Consensus 133 ~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~ 175 (278)
+|.-++-..||.=..++.+++.-...+. ..||.+|++||+-
T Consensus 214 ~EAmeiL~aRqkkAeeLkrltd~A~~Ms--E~Ql~ELRadIK~ 254 (302)
T PF07139_consen 214 AEAMEILDARQKKAEELKRLTDRASQMS--EEQLAELRADIKH 254 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHH
Confidence 9999999999888888888874433322 4556666666543
No 226
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=90.54 E-value=31 Score=37.94 Aligned_cols=18 Identities=22% Similarity=0.457 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023704 74 ALKQELSLAEQELRHLSS 91 (278)
Q Consensus 74 ~L~qEL~laqhEL~~l~~ 91 (278)
.|.+.+.-.+..|..|..
T Consensus 192 ~Le~~~~~~~~~l~~L~~ 209 (1072)
T KOG0979|consen 192 SLEDKLTTKTEKLNRLED 209 (1072)
T ss_pred HHHHHHHHhHHHHHHHHH
Confidence 333333333333333333
No 227
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=90.53 E-value=6.7 Score=34.64 Aligned_cols=50 Identities=20% Similarity=0.348 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhh
Q 023704 137 KLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAA 186 (278)
Q Consensus 137 ~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~raa 186 (278)
.+....++|..++..|.+++..+... ..++..++.++..++..+.+-.--
T Consensus 107 ~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~anrwTDN 157 (188)
T PF03962_consen 107 ELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAANRWTDN 157 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555566666666655544 667777777777777766654433
No 228
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=90.52 E-value=7.9 Score=36.33 Aligned_cols=9 Identities=22% Similarity=0.379 Sum_probs=6.0
Q ss_pred CcccccCCc
Q 023704 16 SQFTMSGRR 24 (278)
Q Consensus 16 ~svTleGD~ 24 (278)
+.|++.|++
T Consensus 31 ~~~~v~G~v 39 (331)
T PRK03598 31 NGLTLYGNV 39 (331)
T ss_pred cceEEEEEE
Confidence 445777777
No 229
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=90.52 E-value=15 Score=34.26 Aligned_cols=62 Identities=11% Similarity=0.078 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHhhh-hccHHHHH----HHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHH
Q 023704 145 MIKDLNEINGDLAKARDE-SKDMAAIK----AEIETERQEIHKGRAAIECEKKNRASNHEQREIMEK 206 (278)
Q Consensus 145 L~~evq~LekDL~~~~~d-~~kl~~Lk----aEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~mek 206 (278)
...++...+.++...+++ ..+++.+. .++..+.....+..+........+...+.+..+|..
T Consensus 187 ~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~G~l~R~~Al~~ 253 (301)
T PF14362_consen 187 KRAQLDAAQAELDTLQAQIDAAIAALDAQIAARKARLDEARQAKVAEFQAIISANDGFLARLEALWE 253 (301)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHhhccCCCHHHHHHHHHH
Confidence 333444444444444444 44555555 666666666666666666666777777777777653
No 230
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=90.44 E-value=14 Score=33.75 Aligned_cols=111 Identities=20% Similarity=0.266 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH----HHHHhhhhhhhhhhhhc
Q 023704 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETER----QEIHKGRAAIECEKKNR 194 (278)
Q Consensus 119 r~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~Lr----qEl~~~raa~e~ekk~~ 194 (278)
..+..++.++.+++..+-++.+..+.+..++..+..++.++.... ..+|.+.-+.|- .+++.+...++-.+...
T Consensus 31 Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A--~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~ 108 (225)
T COG1842 31 QAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKA--ELALQAGNEDLAREALEEKQSLEDLAKALEAEL 108 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777788888888888888888888888888888888877542 123333333333 33444455555555666
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHhhHHH
Q 023704 195 ASNHEQREIMEKNIISVAQQIERLQAELANAEKRARA 231 (278)
Q Consensus 195 ~e~~eq~q~meknl~~m~~e~eklrael~n~~~r~~a 231 (278)
...-++...|++++..+-.-|..+|+...-..-|..+
T Consensus 109 ~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~ 145 (225)
T COG1842 109 QQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAA 145 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777888888888888888888887666655433
No 231
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=90.41 E-value=7.1 Score=33.36 Aligned_cols=49 Identities=27% Similarity=0.333 Sum_probs=41.6
Q ss_pred hhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHhhHHH
Q 023704 183 GRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKRARA 231 (278)
Q Consensus 183 ~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael~n~~~r~~a 231 (278)
...++|+-||-..++-.-.+.|+.+|-.+++.+..++.++.-.-.+..+
T Consensus 92 ~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~ 140 (145)
T COG1730 92 ADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAA 140 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888999999999999999999999999776666544
No 232
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.37 E-value=1.2 Score=42.92 Aligned_cols=48 Identities=23% Similarity=0.113 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHH
Q 023704 166 MAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQ 213 (278)
Q Consensus 166 l~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~ 213 (278)
...|+++++.|.++++.+.+.||-.|+.-.|.++...-.+-+=|.++.
T Consensus 248 ~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~~~~~D~~~ 295 (365)
T KOG2391|consen 248 KQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENLEALDIDEAI 295 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCcCCCchhhh
Confidence 445566666666666666667776666666655555544444444444
No 233
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.30 E-value=31 Score=37.67 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHh
Q 023704 65 NQRLAATHVALKQELSLAEQELRHLSSVAASVKAE 99 (278)
Q Consensus 65 nqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae 99 (278)
|.||-++.+.|+.=.+-.+|+.+.+..-+...++|
T Consensus 377 N~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE 411 (1243)
T KOG0971|consen 377 NARLKDALVRLRDLSASEKQDHQKLQKELEKKNSE 411 (1243)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhH
Confidence 44444444444444444444444444444433333
No 234
>PRK00106 hypothetical protein; Provisional
Probab=90.30 E-value=24 Score=36.28 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=10.5
Q ss_pred HhHHHHHHHHHHHHHHHHhHHhhHHHH
Q 023704 206 KNIISVAQQIERLQAELANAEKRARAA 232 (278)
Q Consensus 206 knl~~m~~e~eklrael~n~~~r~~a~ 232 (278)
.....+.+++|.-=.+ +|++.|+--
T Consensus 184 ~~~~~~i~~~e~~a~~--~a~~~a~~i 208 (535)
T PRK00106 184 HEIATRIREAEREVKD--RSDKMAKDL 208 (535)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 3344444444432221 445555543
No 235
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=90.29 E-value=6.1 Score=34.91 Aligned_cols=75 Identities=19% Similarity=0.293 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHH
Q 023704 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQRE 202 (278)
Q Consensus 124 lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q 202 (278)
++..+..+..++..+.....+|..++......-. +...=..+.++++.|+.++..+.+.++--++...+.+++++
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~----~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~ 141 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELEEKIEEAKKGRE----ESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKLK 141 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 3334444444444444444444444444322111 12223345555666666666666665544445555554443
No 236
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=90.27 E-value=17 Score=34.64 Aligned_cols=91 Identities=22% Similarity=0.330 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHhH-----HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 70 ATHVALKQELSLAEQELRHLSSVAASVKAER-----DAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQE 144 (278)
Q Consensus 70 ~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~-----e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqe 144 (278)
....-++++|..++.+|...+..+...+... +.+.... ...+..++.++.+++.+
T Consensus 170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~----------~~~i~~L~~~l~~~~~~---------- 229 (362)
T TIGR01010 170 DTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQ----------LSLISTLEGELIRVQAQ---------- 229 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHH----------HHHHHHHHHHHHHHHHH----------
Confidence 4555667777777777777777766666554 1111111 22222222222222222
Q ss_pred HHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhh
Q 023704 145 MIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAI 187 (278)
Q Consensus 145 L~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~ 187 (278)
+..+.. .+..+.-++..++++|+.++..|......+
T Consensus 230 ----l~~l~~---~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i 265 (362)
T TIGR01010 230 ----LAQLRS---ITPEQNPQVPSLQARIKSLRKQIDEQRNQL 265 (362)
T ss_pred ----HHHHHh---hCCCCCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 222111 222336778888888888888887765544
No 237
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=90.21 E-value=20 Score=36.96 Aligned_cols=58 Identities=7% Similarity=0.172 Sum_probs=35.6
Q ss_pred hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 023704 163 SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELAN 224 (278)
Q Consensus 163 ~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael~n 224 (278)
+..++.+-+-.+.++.|+..+...-+-.+. +-.+.+.+...+...|..+-+.|...|+
T Consensus 317 ~~~~~~l~~~~~~~~~el~~L~~~~~~~~~----Le~~~~~l~~~~~~~A~~Ls~~R~~~A~ 374 (557)
T COG0497 317 GVTIEDLLEYLDKIKEELAQLDNSEESLEA----LEKEVKKLKAELLEAAEALSAIRKKAAK 374 (557)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhhhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555777777777777777777665543332 2334555666666666666666665544
No 238
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=90.12 E-value=20 Score=37.85 Aligned_cols=82 Identities=15% Similarity=0.284 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHH
Q 023704 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQ 200 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq 200 (278)
....+++|..++.++..+.....++..++..+.+++++.... +..+..++..+...+.... -|+..+-.+.-+
T Consensus 236 ~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~L~~~~~~l~~~~----~e~~~r~kL~N~ 308 (670)
T KOG0239|consen 236 ESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKE---SNTLQSDLESLEENLVEKK----KEKEERRKLHNE 308 (670)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 344455566666666666666666666666666666653322 2223333333333333222 334445555555
Q ss_pred HHHHHHhHH
Q 023704 201 REIMEKNII 209 (278)
Q Consensus 201 ~q~meknl~ 209 (278)
.+-+.-|+=
T Consensus 309 i~eLkGnIR 317 (670)
T KOG0239|consen 309 ILELKGNIR 317 (670)
T ss_pred HHHhhcCce
Confidence 555555543
No 239
>PRK10698 phage shock protein PspA; Provisional
Probab=89.98 E-value=14 Score=33.33 Aligned_cols=88 Identities=16% Similarity=0.245 Sum_probs=49.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHhHHHHHHH-------HHHHhhhhHHHH----HHHHHHHHHHHHH
Q 023704 64 DNQRLAATHVALKQELSLAEQELRHLSSVAA-SVKAERDAEVRE-------LYEKSLKLDAEL----RVIESMHAELDRV 131 (278)
Q Consensus 64 dnqrla~~~~~L~qEL~laqhEL~~l~~~i~-~~~ae~e~~~r~-------l~~k~~kleael----r~~e~lk~El~ql 131 (278)
..-+..+....+++++..++..+.....+.. .+....|.--|+ ..+++..|+.++ ..++.++..+.++
T Consensus 46 alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L 125 (222)
T PRK10698 46 TSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGEL 125 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666666666666666544433 344445555565 445555555554 2334556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023704 132 RADIEKLCVIKQEMIKDLNE 151 (278)
Q Consensus 132 r~ei~~l~~~rqeL~~evq~ 151 (278)
+..|.++...+..|.+..+.
T Consensus 126 ~~ki~eak~k~~~L~aR~~~ 145 (222)
T PRK10698 126 ENKLSETRARQQALMLRHQA 145 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666555443
No 240
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=89.94 E-value=5.3 Score=29.84 Aligned_cols=41 Identities=22% Similarity=0.279 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHH
Q 023704 67 RLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVREL 107 (278)
Q Consensus 67 rla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l 107 (278)
+|-+....|+..|..+...+......+..+..|+|.-++.|
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l 42 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQL 42 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888888887777777777776555555
No 241
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=89.91 E-value=12 Score=34.18 Aligned_cols=60 Identities=22% Similarity=0.366 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hh----hccHHHHHHHHHHHHHHHHhhhhh
Q 023704 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR-------DE----SKDMAAIKAEIETERQEIHKGRAA 186 (278)
Q Consensus 127 El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~-------~d----~~kl~~LkaEIe~LrqEl~~~raa 186 (278)
=|.+++.++..|..++.....+++.|.+|++.+. ++ ...+..+..|+..|+.++.++|..
T Consensus 33 ~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 33 CLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555544432 22 122333444555555555555555
No 242
>PF14992 TMCO5: TMCO5 family
Probab=89.89 E-value=13 Score=35.19 Aligned_cols=25 Identities=16% Similarity=0.341 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHH
Q 023704 196 SNHEQREIMEKNIISVAQQIERLQAE 221 (278)
Q Consensus 196 e~~eq~q~meknl~~m~~e~eklrae 221 (278)
+.++++.- +|++.-+-+|+.|-.-.
T Consensus 158 E~L~rmE~-ekE~~lLe~el~k~q~~ 182 (280)
T PF14992_consen 158 EKLRRMEE-EKEMLLLEKELSKYQMQ 182 (280)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHhch
Confidence 33466666 66666666666555443
No 243
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=89.87 E-value=20 Score=38.28 Aligned_cols=24 Identities=13% Similarity=0.081 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Q 023704 49 DRIAIQHSDIQSLLQDNQRLAATH 72 (278)
Q Consensus 49 ~~L~~q~~eIq~ll~dnqrla~~~ 72 (278)
+-+.....++..++.+..+.-.+.
T Consensus 504 ~~~~~~~~~~~~li~~L~~~~~~~ 527 (771)
T TIGR01069 504 TFYGEFKEEINVLIEKLSALEKEL 527 (771)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHH
Confidence 333333334555554444333333
No 244
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=89.83 E-value=17 Score=37.14 Aligned_cols=93 Identities=17% Similarity=0.336 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHH
Q 023704 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQ 200 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq 200 (278)
++.+-.+++.+.+...-....++.|...+...+++ ...+..+++.+.+.+.++....+=-++.|- +|
T Consensus 422 I~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~e----------k~~l~eeL~~a~~~i~~LqDEL~TTr~NYE---~Q 488 (518)
T PF10212_consen 422 IEELTSQLQHADSKAVHFYAECRALQKRLESAEKE----------KESLEEELKEANQNISRLQDELETTRRNYE---EQ 488 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HH
Confidence 44444444444444444444444444444433332 233444444444444444433333333322 68
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023704 201 REIMEKNIISVAQQIERLQAELANAE 226 (278)
Q Consensus 201 ~q~meknl~~m~~e~eklrael~n~~ 226 (278)
+.+|.--|++|.-.+.+-+.||.+-+
T Consensus 489 Ls~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 489 LSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999886654
No 245
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.83 E-value=20 Score=38.57 Aligned_cols=41 Identities=17% Similarity=0.386 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023704 54 QHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAA 94 (278)
Q Consensus 54 q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~ 94 (278)
+..++...+.+++++-..-.-|..+|+-....++.++....
T Consensus 735 ~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~ 775 (970)
T KOG0946|consen 735 QNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQR 775 (970)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 33356666666666665555555666555555555544444
No 246
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=89.77 E-value=6.9 Score=39.85 Aligned_cols=116 Identities=25% Similarity=0.290 Sum_probs=73.2
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhh
Q 023704 105 RELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGR 184 (278)
Q Consensus 105 r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~r 184 (278)
|...+|+--||.| ++.++.+++..+..|..|...|++|+.+|-.|+.--+..+.- +-+-+.|+ -.-+.++-
T Consensus 593 kG~Aeki~~me~E---i~glq~DkQ~ar~qIh~Le~~Reelsk~V~DLtssaQgakKA---VhdaK~El---A~~Y~klL 663 (790)
T PF07794_consen 593 KGYAEKIGFMEME---IGGLQADKQTARNQIHRLEQRREELSKRVMDLTSSAQGAKKA---VHDAKVEL---AAAYSKLL 663 (790)
T ss_pred hhhHhhhhhhhhh---hcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH---HHHHHHHH---HHHHHHHH
Confidence 4567788888988 778888999999999999999999999998887544333221 11222222 11112222
Q ss_pred hhhhh---hhhhchh----------hHHHHHHHHHhHHHHHHHHHHHHHHHHhHHhhH
Q 023704 185 AAIEC---EKKNRAS----------NHEQREIMEKNIISVAQQIERLQAELANAEKRA 229 (278)
Q Consensus 185 aa~e~---ekk~~~e----------~~eq~q~meknl~~m~~e~eklrael~n~~~r~ 229 (278)
+-|+. -||.+.- |+.=...|.||-|..+-|-..|.|||-.++.|-
T Consensus 664 agiKEKwv~KKe~t~le~qAaEvesNlaLidqi~kaaIdltvEkprlqAeLdd~ea~c 721 (790)
T PF07794_consen 664 AGIKEKWVAKKEYTVLEGQAAEVESNLALIDQITKAAIDLTVEKPRLQAELDDLEARC 721 (790)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHhhchHHHhhh
Confidence 22211 1222222 223344567777888888899999998888554
No 247
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=89.60 E-value=10 Score=30.90 Aligned_cols=66 Identities=20% Similarity=0.319 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhh
Q 023704 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASN 197 (278)
Q Consensus 122 e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~ 197 (278)
..+..+|........+|...+.+|.+-++.|...-..+ .+++.+|+++ |..++..++.||-++.++
T Consensus 19 a~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~---~qr~~eLqak-------i~ea~~~le~eK~ak~~l 84 (107)
T PF09304_consen 19 ASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASR---NQRIAELQAK-------IDEARRNLEDEKQAKLEL 84 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555555555332221 2334444444 444445555555444433
No 248
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=89.52 E-value=19 Score=34.03 Aligned_cols=18 Identities=6% Similarity=-0.018 Sum_probs=8.3
Q ss_pred CcccccCCccCCCCCCCC
Q 023704 16 SQFTMSGRRVLREPPLST 33 (278)
Q Consensus 16 ~svTleGD~ydpeG~LsG 33 (278)
..-++++|..+-....+|
T Consensus 40 ~~~~v~~~~v~v~~~v~G 57 (346)
T PRK10476 40 DDAYIDADVVHVASEVGG 57 (346)
T ss_pred CCeEEEeeeEEEcccCce
Confidence 334445555554444443
No 249
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=89.51 E-value=16 Score=33.19 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 023704 75 LKQELSLAEQELRHLSSVAA 94 (278)
Q Consensus 75 L~qEL~laqhEL~~l~~~i~ 94 (278)
++.+|...+.+...+..++.
T Consensus 25 ~~~~l~~~~~~~~~l~~~i~ 44 (302)
T PF10186_consen 25 LRSELQQLKEENEELRRRIE 44 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 250
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=89.39 E-value=16 Score=33.12 Aligned_cols=114 Identities=18% Similarity=0.197 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 023704 46 HLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMH 125 (278)
Q Consensus 46 ~Le~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk 125 (278)
.+|+--.....=...++...+|+.. .+++|.+|.|+++.+......-+..- -..-+.+.
T Consensus 6 v~~e~~~~~~~~~~~l~~~~~~~~~----~~~~~~~a~~~~s~~l~~~~~~~~~~-----------------~~~D~~v~ 64 (215)
T cd07632 6 VFEEDAGTLTDYTNQLLQAMQRVYG----AQNEMCLATQQLSKQLLAYEKQNFAL-----------------GKGDEEVI 64 (215)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHhcCCC-----------------CCCcHHHH
Confidence 3344333333334455666666655 45999999999998866555433221 11223334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhh-hccHHHHHHHHHHHHHHH
Q 023704 126 AELDRVRADIEKLCVIKQEMIKDL-NEINGDLAKARDE-SKDMAAIKAEIETERQEI 180 (278)
Q Consensus 126 ~El~qlr~ei~~l~~~rqeL~~ev-q~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl 180 (278)
.-|.+.-.-++++...+.+|..++ ..+..-|..|..+ ..+++++|+..+....++
T Consensus 65 ~sL~kFs~~L~el~~~h~~L~dqaq~sl~~pL~~F~KeDl~~vKe~KK~FdK~Se~~ 121 (215)
T cd07632 65 STLQYFAKVVDELNVLHSELAKQLADTMVLPIIQFREKDLTEVSTLKDLFGIASNEH 121 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 445555566666677777777777 4778888889887 788888888888877764
No 251
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=89.33 E-value=8.1 Score=29.71 Aligned_cols=86 Identities=21% Similarity=0.353 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhH
Q 023704 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEIN--GDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNH 198 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~Le--kDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~ 198 (278)
+.....++..+...+..|...+.++...+.... -.+..+..-..-+..|...|..++.++..++..++.-.+...+..
T Consensus 7 l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~ 86 (123)
T PF02050_consen 7 LAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEAR 86 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666666666666644444333 111333333455666677777777777777777766666666666
Q ss_pred HHHHHHHH
Q 023704 199 EQREIMEK 206 (278)
Q Consensus 199 eq~q~mek 206 (278)
-..++||+
T Consensus 87 ~~~k~~e~ 94 (123)
T PF02050_consen 87 RERKKLEK 94 (123)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
No 252
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=89.16 E-value=28 Score=38.36 Aligned_cols=94 Identities=15% Similarity=0.259 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHH
Q 023704 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQ 200 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq 200 (278)
++.++.+|.+++............|..+...+++.|.... .++..++.+++++...+..+ .+.
T Consensus 457 l~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~----------~el~~~~ee~~~~~~~l~~~----e~i--- 519 (1041)
T KOG0243|consen 457 LENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKN----------KELESLKEELQQAKATLKEE----EEI--- 519 (1041)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH----HHH---
Confidence 5555555555555555444445566666666666555533 23334444444444332211 122
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhHHhhHHH
Q 023704 201 REIMEKNIISVAQQIERLQAELANAEKRARA 231 (278)
Q Consensus 201 ~q~meknl~~m~~e~eklrael~n~~~r~~a 231 (278)
.+.|+++-....+-..+||..+..+.+.-.+
T Consensus 520 i~~~~~se~~l~~~a~~l~~~~~~s~~d~s~ 550 (1041)
T KOG0243|consen 520 ISQQEKSEEKLVDRATKLRRSLEESQDDLSS 550 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444477788888777655443
No 253
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=89.13 E-value=31 Score=35.88 Aligned_cols=35 Identities=23% Similarity=0.341 Sum_probs=18.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 57 DIQSLLQDNQRLAATHVALKQELSLAEQELRHLSS 91 (278)
Q Consensus 57 eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~ 91 (278)
++..+-.+.+.+..+...++.++..++.++..+..
T Consensus 217 el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 217 ELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555666666655555554444
No 254
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=89.12 E-value=7.6 Score=29.27 Aligned_cols=9 Identities=33% Similarity=0.774 Sum_probs=4.6
Q ss_pred hHHHHHHHH
Q 023704 99 ERDAEVREL 107 (278)
Q Consensus 99 e~e~~~r~l 107 (278)
++|.+|..|
T Consensus 9 EKDe~Ia~L 17 (74)
T PF12329_consen 9 EKDEQIAQL 17 (74)
T ss_pred hHHHHHHHH
Confidence 445555555
No 255
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=88.93 E-value=24 Score=35.28 Aligned_cols=15 Identities=20% Similarity=0.116 Sum_probs=10.4
Q ss_pred hhhhhhhchhhHHHH
Q 023704 187 IECEKKNRASNHEQR 201 (278)
Q Consensus 187 ~e~ekk~~~e~~eq~ 201 (278)
|..||++-.|+.|.+
T Consensus 365 fq~ekeatqELieel 379 (502)
T KOG0982|consen 365 FQEEKEATQELIEEL 379 (502)
T ss_pred HHHhhHHHHHHHHHH
Confidence 777777777776654
No 256
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=88.79 E-value=9.9 Score=29.78 Aligned_cols=64 Identities=16% Similarity=0.358 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHH
Q 023704 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDL---NEINGDLAKARDE-SKDMAAIKAEIETERQEIH 181 (278)
Q Consensus 118 lr~~e~lk~El~qlr~ei~~l~~~rqeL~~ev---q~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~ 181 (278)
+..++.++.+|..++..+..+......+.... ..+..+|.....+ ......++..|+.|.....
T Consensus 7 ~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~ 74 (117)
T smart00503 7 FEKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENL 74 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34455555566666655555555555554333 3455555555555 4555666666666655544
No 257
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=88.72 E-value=35 Score=36.02 Aligned_cols=63 Identities=14% Similarity=0.281 Sum_probs=38.3
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHH---HHHHHHHHHHHhHH
Q 023704 164 KDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVA---QQIERLQAELANAE 226 (278)
Q Consensus 164 ~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~---~e~eklrael~n~~ 226 (278)
+++..|++++..++.+.......++.-.+....+..++...+.+|+.-- .+--||+.+|.-.+
T Consensus 248 ~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLk 313 (670)
T KOG0239|consen 248 QELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELK 313 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344555666666666666666666666666666777777777777665 33445555554443
No 258
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=88.71 E-value=16 Score=32.76 Aligned_cols=89 Identities=12% Similarity=0.199 Sum_probs=47.6
Q ss_pred hccHHHHHHHHHHHHHHHHhhhhhh-hhhh-----hhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHhhHHHHH---
Q 023704 163 SKDMAAIKAEIETERQEIHKGRAAI-ECEK-----KNRASNHEQREIMEKNIISVAQQIERLQAELANAEKRARAAA--- 233 (278)
Q Consensus 163 ~~kl~~LkaEIe~LrqEl~~~raa~-e~ek-----k~~~e~~eq~q~meknl~~m~~e~eklrael~n~~~r~~a~~--- 233 (278)
..++-.++.++-.++.-+...+..+ +.-+ ....+..+..+.....+..+...++.++..+.+...--.+..
T Consensus 150 ~~~l~~l~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (292)
T PF01544_consen 150 LRELFDLRRELSRLRRSLSPLREVLQRLLRRDDSPFISDEDKEYLRDLLDRIERLLERAESLRERLESLQDLYQSKLSNR 229 (292)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666666 3332 233334444566666666666666666665554432211111
Q ss_pred ----------HhhhcCC----CCccccCCC-CC
Q 023704 234 ----------AAAAVNP----STSYAASYG-NP 251 (278)
Q Consensus 234 ----------~a~~~~~----~~~y~~~~g-n~ 251 (278)
.+.+.-| .|-||||+. -|
T Consensus 230 ~n~~m~~LT~~t~iflPlt~i~g~fGMN~~~~p 262 (292)
T PF01544_consen 230 QNRVMKVLTIVTAIFLPLTFITGIFGMNFKGMP 262 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSTTS-SS---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCccCCC
Confidence 1344444 579999997 44
No 259
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=88.65 E-value=4.3 Score=32.04 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 023704 122 ESMHAELDRVRADIEK 137 (278)
Q Consensus 122 e~lk~El~qlr~ei~~ 137 (278)
+.++++--.+..+|..
T Consensus 46 e~lr~~rN~~sk~I~~ 61 (108)
T PF02403_consen 46 EELRAERNELSKEIGK 61 (108)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHH
Confidence 3333333333333333
No 260
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=88.64 E-value=23 Score=35.41 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=40.3
Q ss_pred hhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHhhH
Q 023704 162 ESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKRA 229 (278)
Q Consensus 162 d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael~n~~~r~ 229 (278)
+.-+++.|+.+|..|+++|...|..+--.. +. . .+.....|-|.|.-|..-|++.=
T Consensus 312 ~sPqV~~l~~rI~aLe~QIa~er~kl~~~~-g~-~----------~la~~laeYe~L~le~efAe~~y 367 (434)
T PRK15178 312 QNPLIPRLSAKIKVLEKQIGEQRNRLSNKL-GS-Q----------GSSESLSLFEDLRLQSEIAKARW 367 (434)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHhhcCC-CC-C----------chhHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999998888774221 10 0 33456667788887777777653
No 261
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=88.63 E-value=19 Score=34.01 Aligned_cols=13 Identities=8% Similarity=0.171 Sum_probs=5.8
Q ss_pred HHHHHHHHHHhHH
Q 023704 214 QIERLQAELANAE 226 (278)
Q Consensus 214 e~eklrael~n~~ 226 (278)
+++..+..|.++.
T Consensus 198 ~l~~a~~~l~~~~ 210 (346)
T PRK10476 198 ALAIAELHLEDTT 210 (346)
T ss_pred HHHHHHHHhhcCE
Confidence 3444444454443
No 262
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=88.61 E-value=19 Score=32.84 Aligned_cols=47 Identities=23% Similarity=0.266 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHhHHHHHHHHHHHhhhh
Q 023704 68 LAATHVALKQELSLAEQELRHLSSVA-ASVKAERDAEVRELYEKSLKL 114 (278)
Q Consensus 68 la~~~~~L~qEL~laqhEL~~l~~~i-~~~~ae~e~~~r~l~~k~~kl 114 (278)
+...+..|..+++-++.....+..+. ..+....|.--|+.+++...+
T Consensus 50 ~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~l 97 (225)
T COG1842 50 AIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSL 97 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 33444444444444444444443222 223333455555553333333
No 263
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=88.54 E-value=9.9 Score=33.75 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=27.6
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHhHHhhHHH
Q 023704 197 NHEQREIMEKNIISVAQQIERLQAELANAEKRARA 231 (278)
Q Consensus 197 ~~eq~q~meknl~~m~~e~eklrael~n~~~r~~a 231 (278)
..+..+++.+.+.+|..++++|-.++.|++-+=..
T Consensus 150 ~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 150 LKEKKEAKDKEISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677788999999999999999999977444
No 264
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=88.34 E-value=26 Score=37.49 Aligned_cols=49 Identities=12% Similarity=0.131 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSV 92 (278)
Q Consensus 44 ~~~Le~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~ 92 (278)
.+..++.+.....++.+++.+....-.+....++++.....++..+...
T Consensus 504 i~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~ 552 (782)
T PRK00409 504 IEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEE 552 (782)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444666666555544444444444444444444444333
No 265
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=88.26 E-value=4.6 Score=35.95 Aligned_cols=64 Identities=22% Similarity=0.302 Sum_probs=57.0
Q ss_pred hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023704 163 SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAE 226 (278)
Q Consensus 163 ~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael~n~~ 226 (278)
.+.+.+|.++++.+++.+-.++..||.+|.++-+--+.-...++.+-+.-.+++-||.||++..
T Consensus 80 ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~ 143 (203)
T KOG3433|consen 80 KSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQ 143 (203)
T ss_pred HHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678899999999999999999999999999876655555999999999999999999999876
No 266
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=88.26 E-value=24 Score=33.54 Aligned_cols=86 Identities=28% Similarity=0.262 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 67 RLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMI 146 (278)
Q Consensus 67 rla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~ 146 (278)
.++.....|+..|...+.+++++..---+...+---+..+| +..++..+.|-.+++.+.+.|.....+|.
T Consensus 48 ~~a~~aETLeln~ealere~eLlaa~gc~a~~e~gterqdL----------aa~i~etkeeNlkLrTd~eaL~dq~adLh 117 (389)
T KOG4687|consen 48 GLAARAETLELNLEALERELELLAACGCDAKIEFGTERQDL----------AADIEETKEENLKLRTDREALLDQKADLH 117 (389)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHhcCCCchhhccchhhHH----------HHHHHHHHHHhHhhhHHHHHHHHHHHHHh
Confidence 34444455555555555555555443333333222222233 44477777777888888888888888888
Q ss_pred HHHHHHHHHHHHHhhh
Q 023704 147 KDLNEINGDLAKARDE 162 (278)
Q Consensus 147 ~evq~LekDL~~~~~d 162 (278)
.+..-+.+-...|.+.
T Consensus 118 gD~elfReTeAq~ese 133 (389)
T KOG4687|consen 118 GDCELFRETEAQFESE 133 (389)
T ss_pred chHHHHHHHHHHHHHH
Confidence 8877777777777655
No 267
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=88.20 E-value=18 Score=32.07 Aligned_cols=72 Identities=24% Similarity=0.281 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHhHHHHHHHHHHHhhhhHHH
Q 023704 46 HLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAAS-VKAERDAEVRELYEKSLKLDAE 117 (278)
Q Consensus 46 ~Le~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~-~~ae~e~~~r~l~~k~~kleae 117 (278)
.|+..|......+...-....+.......|++++.-+..++.....+... +....|---|..+.+...++..
T Consensus 27 ~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~ 99 (221)
T PF04012_consen 27 MLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQ 99 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555556666666677777777766666554442 3444556666664444444333
No 268
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=88.13 E-value=9.5 Score=30.56 Aligned_cols=27 Identities=37% Similarity=0.448 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 023704 196 SNHEQREIMEKNIISVAQQIERLQAEL 222 (278)
Q Consensus 196 e~~eq~q~meknl~~m~~e~eklrael 222 (278)
..-.++..+++++-.+..++..|+..+
T Consensus 98 ~l~~~~~~l~~~~~~~~~~~~~l~~~l 124 (129)
T cd00890 98 TLEKQIEKLEKQLEKLQDQITELQEEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555544
No 269
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=88.03 E-value=26 Score=33.71 Aligned_cols=19 Identities=16% Similarity=0.169 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHhHH
Q 023704 208 IISVAQQIERLQAELANAE 226 (278)
Q Consensus 208 l~~m~~e~eklrael~n~~ 226 (278)
+.++-.|---|++.|.+++
T Consensus 191 IDaLi~ENRyL~erl~q~q 209 (319)
T PF09789_consen 191 IDALIMENRYLKERLKQLQ 209 (319)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555666665554
No 270
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=87.99 E-value=31 Score=34.48 Aligned_cols=154 Identities=20% Similarity=0.272 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHH-HHH-HHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 023704 76 KQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAE-LRV-IESMHAELD----RVRADIEKLCVIKQEMIKDL 149 (278)
Q Consensus 76 ~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleae-lr~-~e~lk~El~----qlr~ei~~l~~~rqeL~~ev 149 (278)
..||...++||..+.+...++.++-..-|-.|.+|+.++-.= +.. ...-+.=+. .|-.+-+.|.+...+|+.-|
T Consensus 154 ~~el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~v 233 (426)
T smart00806 154 RAELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDII 233 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 488888899999998888888888777777776666665221 100 112222222 24456677888888888888
Q ss_pred HHHHHHHHHHhhh--hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhh-----------HHHHHHHHHhHHHHHHHHH
Q 023704 150 NEINGDLAKARDE--SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASN-----------HEQREIMEKNIISVAQQIE 216 (278)
Q Consensus 150 q~LekDL~~~~~d--~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~-----------~eq~q~meknl~~m~~e~e 216 (278)
..|.+|+..-..- -.||..+..+|+.++++|+++..-|.-||-.--.. -+.+.-+|.=++-+-.-++
T Consensus 234 E~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQedL~~DL~dDL~ 313 (426)
T smart00806 234 EALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQEDLIADLKEDLE 313 (426)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998876666 68899999999999999999999999888432221 1222333333334444555
Q ss_pred HHHHHHHhHHhhH
Q 023704 217 RLQAELANAEKRA 229 (278)
Q Consensus 217 klrael~n~~~r~ 229 (278)
|...=+++.++..
T Consensus 314 ka~eTf~lVeq~~ 326 (426)
T smart00806 314 KAEETFDLVEQCC 326 (426)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 271
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=87.97 E-value=14 Score=30.41 Aligned_cols=65 Identities=25% Similarity=0.296 Sum_probs=35.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHH
Q 023704 108 YEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQ 178 (278)
Q Consensus 108 ~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~Lrq 178 (278)
+.-..|||..|..+.-+..|+..+..|-.--.-.--= -+.+|+.+.+++ +++|.-+.+||..+-.
T Consensus 25 ~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpv------Lvkqel~EAr~nV~kRlefI~~Eikr~e~ 90 (120)
T KOG3478|consen 25 VESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPV------LVKQELEEARTNVGKRLEFISKEIKRLEN 90 (120)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcch------hhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3344578888888888888888877664332211111 123455555555 4444444444444333
No 272
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=87.80 E-value=24 Score=33.14 Aligned_cols=63 Identities=8% Similarity=0.156 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 023704 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKN 193 (278)
Q Consensus 127 El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~ 193 (278)
.|...+..++.....++.|..+|+.|+.. .-+..||..|+.||-.+-.+..-+++.+..-|..
T Consensus 132 ~IR~~E~sl~p~R~~r~~l~d~I~kLk~k----~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~ 194 (271)
T PF13805_consen 132 SIRNREESLQPSRDRRRKLQDEIAKLKYK----DPQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQ 194 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHHHhc----CCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Confidence 34444556666666777777777777542 2337789999999888888888888777766543
No 273
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=87.70 E-value=25 Score=35.03 Aligned_cols=119 Identities=15% Similarity=0.222 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHH-----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 76 KQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDA-----E-LRVIESMHAELDRVRADIEKLCVIKQEMIKDL 149 (278)
Q Consensus 76 ~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~klea-----e-lr~~e~lk~El~qlr~ei~~l~~~rqeL~~ev 149 (278)
..++...++||..|.+....+..+--.-|-.+-+++.++=. . -...--+...-..+..+.+.|.....+|..-|
T Consensus 150 ~~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~V 229 (424)
T PF03915_consen 150 LKEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDLV 229 (424)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777888877777777666655555555444443311 1 01122333444456667777888888888888
Q ss_pred HHHHHHHHHHhhh--hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Q 023704 150 NEINGDLAKARDE--SKDMAAIKAEIETERQEIHKGRAAIECEKKNR 194 (278)
Q Consensus 150 q~LekDL~~~~~d--~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~ 194 (278)
+.|.+|+..-..- ..++..+..+|..+..+|..+..-|.-||-.-
T Consensus 230 E~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~W 276 (424)
T PF03915_consen 230 EDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIW 276 (424)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 8888888776655 68899999999999999999999998888543
No 274
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=87.68 E-value=33 Score=34.58 Aligned_cols=132 Identities=14% Similarity=0.117 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHH-----------HHHHHHHHHHHHHH
Q 023704 65 NQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELR-----------VIESMHAELDRVRA 133 (278)
Q Consensus 65 nqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr-----------~~e~lk~El~qlr~ 133 (278)
+.........|+++|.++...+++=.......... ...|..++|.+.| ..-..++|+...+.
T Consensus 201 ~le~~Sal~~lq~~L~la~~~~~~~~e~~i~~~~~-------f~~r~~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~ 273 (554)
T KOG4677|consen 201 SLERFSALRSLQDKLQLAEEAVSMHDENVITAVLI-------FLKRTLSKEIEFRNELEVRQLALRHLIHFKKEIDEQKL 273 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444556677778777777766644333222111 2334444444433 22333445555444
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHh
Q 023704 134 DIEK--LCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKN 207 (278)
Q Consensus 134 ei~~--l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~mekn 207 (278)
.++. +....++|..-.++-. ..-.+.-|..++++|++.+|.|+.-.+..++.-..-.--+--+++-||-+
T Consensus 274 ~~~l~~~l~~keeL~~s~~~e~----~i~qs~~kstas~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq 345 (554)
T KOG4677|consen 274 LLDLFRFLDRKEELALSHYREH----LIIQSPDKSTASRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQ 345 (554)
T ss_pred HHHHHHHhhhHHHHHHHHHHHh----hccCCCCcchhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 3444444433222111 11112334567778888777777666666554443333333444444443
No 275
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=87.67 E-value=49 Score=36.52 Aligned_cols=97 Identities=12% Similarity=0.125 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhh
Q 023704 125 HAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-------SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASN 197 (278)
Q Consensus 125 k~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-------~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~ 197 (278)
..++..++..|+.+......+...+..+.+.+...... ...+..++..+..+.+++..++..+.--+ ..
T Consensus 776 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~ 851 (1047)
T PRK10246 776 EETLTQLEQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQLAQQLRENTTRQGEIR----QQ 851 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Confidence 34666677777777777777777777776666552111 12455566666666666665555543111 11
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhH
Q 023704 198 HEQREIMEKNIISVAQQIERLQAELANA 225 (278)
Q Consensus 198 ~eq~q~meknl~~m~~e~eklrael~n~ 225 (278)
+.+.+...+.+-.+..+++.++.+....
T Consensus 852 l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (1047)
T PRK10246 852 LKQDADNRQQQQALMQQIAQATQQVEDW 879 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222333333333444555566544433
No 276
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=87.53 E-value=19 Score=37.52 Aligned_cols=8 Identities=25% Similarity=0.563 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 023704 149 LNEINGDL 156 (278)
Q Consensus 149 vq~LekDL 156 (278)
|..|++.|
T Consensus 497 ve~L~~~l 504 (652)
T COG2433 497 VEELERKL 504 (652)
T ss_pred HHHHHHHH
Confidence 33333333
No 277
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=87.51 E-value=5.4 Score=34.15 Aligned_cols=67 Identities=24% Similarity=0.330 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 023704 125 HAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKK 192 (278)
Q Consensus 125 k~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk 192 (278)
..|+..+..+|.+|.....+|..++..++.+|..+.+.- -..+|...|..|++++..+...++.-+.
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~-t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEP-TNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346666677777777777777777777777766655431 1345677777777777777777776555
No 278
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.49 E-value=33 Score=34.29 Aligned_cols=162 Identities=15% Similarity=0.191 Sum_probs=85.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHH
Q 023704 39 QHSPSLHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAEL 118 (278)
Q Consensus 39 ~~~~l~~~Le~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleael 118 (278)
+.-|+ .++..+..+..+.+.+-.|...+..+...|+-=+...+.++......+-.-...+|...+.|
T Consensus 284 ~gy~l--v~dt~w~~lqkegrqlqrdlE~~~~~r~ele~~~~qs~ed~t~q~~~ll~~~q~sE~ll~tl----------- 350 (542)
T KOG0993|consen 284 IGYPL--VLDTLWFILQKEGRQLQRDLEELIETRAELEHTEQQSQEDITVQRAQLLEERQHSEDLLVTL----------- 350 (542)
T ss_pred CCCCc--ChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHH-----------
Confidence 33445 55666666666666666677777777766666666666666555555554444555544444
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhh-----------h---------------ccHHH
Q 023704 119 RVIESMHAELDRVRADIEK----LCVIKQEMIKDLNEINGDLAKARDE-----------S---------------KDMAA 168 (278)
Q Consensus 119 r~~e~lk~El~qlr~ei~~----l~~~rqeL~~evq~LekDL~~~~~d-----------~---------------~kl~~ 168 (278)
..+|-+++.++++ |...+..+..++.+|.++=.-+... . +.-..
T Consensus 351 ------q~~iSqaq~~vq~qma~lv~a~e~i~~e~~rl~q~nd~l~~~~~l~t~~Qq~e~~~lp~ave~l~ql~~~~r~~ 424 (542)
T KOG0993|consen 351 ------QAEISQAQSEVQKQMARLVVASETIADEDSRLRQINDLLTTVGELETQVQQAEVQNLPAAVEQLAQLYKQRRTS 424 (542)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhHhhhhcchhhHHHHHHHHHHHHHH
Confidence 2233333322222 2222333333333333221111100 0 00122
Q ss_pred HHHHH-------HHHHHHHHhhhhhhhhhhhhchhhHHHHH-------HHHHhHHHHHHHHHHHH
Q 023704 169 IKAEI-------ETERQEIHKGRAAIECEKKNRASNHEQRE-------IMEKNIISVAQQIERLQ 219 (278)
Q Consensus 169 LkaEI-------e~LrqEl~~~raa~e~ekk~~~e~~eq~q-------~meknl~~m~~e~eklr 219 (278)
+.+++ +.|+.+|..++-+++.|.-...++-.|++ .-+-.+.|+..|.|.|+
T Consensus 425 ~~~~l~a~ehv~e~l~~ei~~L~eqle~e~~~~~~le~ql~~~ve~c~~~~aS~~slk~e~erl~ 489 (542)
T KOG0993|consen 425 LQQELDASEHVQEDLVKEIQSLQEQLEKERQSEQELEWQLDDDVEQCSNCDASFASLKVEPERLH 489 (542)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 22222 67788888888888888877777655554 45556666666888886
No 279
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=87.43 E-value=34 Score=37.10 Aligned_cols=18 Identities=33% Similarity=0.379 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023704 72 HVALKQELSLAEQELRHL 89 (278)
Q Consensus 72 ~~~L~qEL~laqhEL~~l 89 (278)
|+.+..+|+....++.-+
T Consensus 963 haE~daeLe~~~ael~el 980 (1424)
T KOG4572|consen 963 HAEIDAELEKEFAELIEL 980 (1424)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 444445555555554444
No 280
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=87.41 E-value=37 Score=37.70 Aligned_cols=27 Identities=22% Similarity=0.135 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 023704 196 SNHEQREIMEKNIISVAQQIERLQAEL 222 (278)
Q Consensus 196 e~~eq~q~meknl~~m~~e~eklrael 222 (278)
.++--++.|...+-....+||-||-|-
T Consensus 1197 KnltdvK~missf~d~laeiE~LrnEr 1223 (1439)
T PF12252_consen 1197 KNLTDVKSMISSFNDRLAEIEFLRNER 1223 (1439)
T ss_pred CchhhHHHHHHHHHhhhhHHHHHHHHH
Confidence 334467778888877777888777664
No 281
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=87.38 E-value=13 Score=29.44 Aligned_cols=11 Identities=18% Similarity=0.510 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 023704 127 ELDRVRADIEK 137 (278)
Q Consensus 127 El~qlr~ei~~ 137 (278)
.+..+..++.+
T Consensus 71 ~~e~le~~i~~ 81 (105)
T cd00632 71 RLETIELRIKR 81 (105)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 282
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=87.22 E-value=5.9 Score=29.02 Aligned_cols=32 Identities=3% Similarity=0.150 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 128 LDRVRADIEKLCVIKQEMIKDLNEINGDLAKA 159 (278)
Q Consensus 128 l~qlr~ei~~l~~~rqeL~~evq~LekDL~~~ 159 (278)
-..+...+++......+|..+|..|.++|.++
T Consensus 27 n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 27 NLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444444444444444433
No 283
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=87.16 E-value=12 Score=35.76 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=10.2
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhhh
Q 023704 164 KDMAAIKAEIETERQEIHKGRAAI 187 (278)
Q Consensus 164 ~kl~~LkaEIe~LrqEl~~~raa~ 187 (278)
..|++.+..|+.++.++..++..|
T Consensus 81 ~si~~q~~~i~~l~~~i~~l~~~i 104 (301)
T PF06120_consen 81 ESIAAQKRAIEDLQKKIDSLKDQI 104 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444
No 284
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=87.08 E-value=53 Score=36.28 Aligned_cols=11 Identities=9% Similarity=0.386 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 023704 50 RIAIQHSDIQS 60 (278)
Q Consensus 50 ~L~~q~~eIq~ 60 (278)
.+.....+++.
T Consensus 531 ~l~~~~~~~~~ 541 (1047)
T PRK10246 531 RLDALEKEVKK 541 (1047)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 285
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=87.07 E-value=15 Score=33.07 Aligned_cols=103 Identities=14% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHH
Q 023704 124 MHAELDRVRADIEKLCVIKQEMIKDLN-EINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQR 201 (278)
Q Consensus 124 lk~El~qlr~ei~~l~~~rqeL~~evq-~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~ 201 (278)
++.=...+..+...+......+...+. .+...|..|..+ .++.+.+..+++.+.+........++--|+.+-..-..+
T Consensus 58 l~~a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~ 137 (236)
T cd07651 58 LKNSLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADCSKI 137 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q ss_pred HHHHHhHHHHH-HHHHHHHHHHHhHH
Q 023704 202 EIMEKNIISVA-QQIERLQAELANAE 226 (278)
Q Consensus 202 q~meknl~~m~-~e~eklrael~n~~ 226 (278)
.......-.+. +|++|+.+.+..++
T Consensus 138 e~~~~~~~~~~~ke~eK~~~k~~k~~ 163 (236)
T cd07651 138 NSYTLQSQLTWGKELEKNNAKLNKAQ 163 (236)
T ss_pred HHHHHHHcccCcchHHHHHHHHHHHH
No 286
>PRK09343 prefoldin subunit beta; Provisional
Probab=87.04 E-value=15 Score=30.03 Aligned_cols=40 Identities=8% Similarity=0.147 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023704 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~ 160 (278)
...++..++-+..+|+.+......|..++..+++.|.++-
T Consensus 73 ~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 73 EKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555556666666666666666666665555555543
No 287
>PRK14001 potassium-transporting ATPase subunit C; Provisional
Probab=86.90 E-value=0.99 Score=40.17 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=27.0
Q ss_pred ccCceEE-------EeecCCCcccccCCccCCCCCCCCCCCCCCCCch
Q 023704 3 IYGNSLH-------TTLHNHSQFTMSGRRVLREPPLSTRALPPQHSPS 43 (278)
Q Consensus 3 ifG~tli-------vtfhp~~svTleGD~ydpeG~LsGGs~p~~~~~l 43 (278)
|.|+.|| -+||+.+|-| +|-||+.+ ||||.-.++.|.
T Consensus 50 vvGS~LIgQ~F~~~~yF~~RPSa~--~~~y~~~~--SggSNl~psnp~ 93 (189)
T PRK14001 50 VIGSAHIGQQFTAAKYFHPRPSSA--GDGYDAAA--SSGSNLGPTNEK 93 (189)
T ss_pred EEeeeeecCCCCCCCCccCCCcCC--CCCCCccc--ccccCCCCCCHH
Confidence 5688888 8899998886 56788665 788854445554
No 288
>PRK12704 phosphodiesterase; Provisional
Probab=86.86 E-value=39 Score=34.50 Aligned_cols=61 Identities=13% Similarity=0.243 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHH
Q 023704 145 MIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIME 205 (278)
Q Consensus 145 L~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~me 205 (278)
|..+-+.|++....+.....+|...+.+|+..++++.+.+..++.-+......+++.-.|.
T Consensus 91 L~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt 151 (520)
T PRK12704 91 LLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLT 151 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4555555555555555555566666666666666666666666665555555555554443
No 289
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=86.65 E-value=33 Score=33.42 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhH
Q 023704 169 IKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANA 225 (278)
Q Consensus 169 LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael~n~ 225 (278)
+..++..++..+..+++.++--++. +......+..+..+-||++--+.-....
T Consensus 309 ~~~~~~~~~~~~~~l~~~l~~~~~~----~~~l~~~~~~~~~L~r~~~~~~~~y~~l 361 (444)
T TIGR03017 309 VGTNSRILKQREAELREALENQKAK----VLELNRQRDEMSVLQRDVENAQRAYDAA 361 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555554422111 1122222334455555555555444433
No 290
>PF14992 TMCO5: TMCO5 family
Probab=86.60 E-value=29 Score=32.78 Aligned_cols=31 Identities=26% Similarity=0.349 Sum_probs=14.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023704 64 DNQRLAATHVALKQELSLAEQELRHLSSVAA 94 (278)
Q Consensus 64 dnqrla~~~~~L~qEL~laqhEL~~l~~~i~ 94 (278)
|.|++-.....|=+.++.+...++.|..-|.
T Consensus 12 d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit 42 (280)
T PF14992_consen 12 DEQRLDEANQSLLQKIQEKEGAIQSLEREIT 42 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555555555544443
No 291
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=86.54 E-value=6.6 Score=38.79 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNE 151 (278)
Q Consensus 118 lr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~ 151 (278)
+..+-.+.++..++..+++.|.+.+..++.+|..
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~ 62 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRNELSKQIGK 62 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666677777766666655
No 292
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=86.54 E-value=19 Score=30.80 Aligned_cols=42 Identities=17% Similarity=0.334 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023704 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (278)
Q Consensus 119 r~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~ 160 (278)
.+++-+++.+..+...++++....++|...+..+.+.++...
T Consensus 94 eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~ 135 (145)
T COG1730 94 EAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQ 135 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777777777777777766644
No 293
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=86.49 E-value=13 Score=33.73 Aligned_cols=29 Identities=24% Similarity=0.244 Sum_probs=19.5
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 023704 164 KDMAAIKAEIETERQEIHKGRAAIECEKK 192 (278)
Q Consensus 164 ~kl~~LkaEIe~LrqEl~~~raa~e~ekk 192 (278)
+|...+..|.+.|..+.++++..|+-.-|
T Consensus 186 Kq~e~~~~EydrLlee~~~Lq~~i~~~~~ 214 (216)
T KOG1962|consen 186 KQSEGLQDEYDRLLEEYSKLQEQIESGGK 214 (216)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHhccCC
Confidence 44556667777777777777777765433
No 294
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=86.48 E-value=4.2 Score=40.24 Aligned_cols=34 Identities=12% Similarity=0.324 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNE 151 (278)
Q Consensus 118 lr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~ 151 (278)
+..+-++.++..++..+++.|.+.+++++.+|..
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~ 60 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQ 60 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455556666666666666666666666654
No 295
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=86.46 E-value=41 Score=37.43 Aligned_cols=90 Identities=11% Similarity=0.219 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh------hccHHHHHHHHHHHHHHHH------------hh-hhhhhhhhhhc
Q 023704 134 DIEKLCVIKQEMIKDLNEINGDLAKARDE------SKDMAAIKAEIETERQEIH------------KG-RAAIECEKKNR 194 (278)
Q Consensus 134 ei~~l~~~rqeL~~evq~LekDL~~~~~d------~~kl~~LkaEIe~LrqEl~------------~~-raa~e~ekk~~ 194 (278)
+|+...+...+..++|+.|.++--+-... -+-|..|+..|..+.|-+. .. ...|+.++|.-
T Consensus 1201 dvK~missf~d~laeiE~LrnErIKkHGaSkePLDlSDlDkLk~~LQ~iNQ~LV~~LIn~iR~slnqme~~tf~~q~~ei 1280 (1439)
T PF12252_consen 1201 DVKSMISSFNDRLAEIEFLRNERIKKHGASKEPLDLSDLDKLKGQLQKINQNLVKALINTIRVSLNQMEVKTFEEQEKEI 1280 (1439)
T ss_pred hHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Confidence 55555555556666666665553332211 2223334443333332221 11 45788888888
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 023704 195 ASNHEQREIMEKNIISVAQQIERLQAELAN 224 (278)
Q Consensus 195 ~e~~eq~q~meknl~~m~~e~eklrael~n 224 (278)
..+++++-.+++.|..=- =.+|+|++|..
T Consensus 1281 q~n~~ll~~L~~tlD~S~-~a~Kqk~di~k 1309 (1439)
T PF12252_consen 1281 QQNLQLLDKLEKTLDDSD-TAQKQKEDIVK 1309 (1439)
T ss_pred HHHHHHHHHHHHHhcchH-HHHHHHHHHHH
Confidence 888999988888886532 34556665544
No 296
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=86.42 E-value=13 Score=28.57 Aligned_cols=40 Identities=13% Similarity=0.280 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023704 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~ 160 (278)
.+.+|.|...+-.++......+.++..+|.+--+||+.++
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir 45 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIR 45 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888888888888887777776666654
No 297
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=86.34 E-value=13 Score=37.62 Aligned_cols=41 Identities=20% Similarity=0.282 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 023704 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQ 84 (278)
Q Consensus 44 ~~~Le~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqh 84 (278)
+.-|--++...+.+++.++.+|++|.++...|++......+
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~ 101 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQ 101 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 45566666777778888888888777777666665544443
No 298
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=86.26 E-value=31 Score=32.80 Aligned_cols=86 Identities=21% Similarity=0.294 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHH
Q 023704 134 DIEKLCVIKQEMIKDLNEINGDLAKARDE----SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNII 209 (278)
Q Consensus 134 ei~~l~~~rqeL~~evq~LekDL~~~~~d----~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~ 209 (278)
.+..+.....+|..++..-..--.+|+.- +.--...+.|++.|...+.++......-|. .-...-++||
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~-------k~e~~n~~l~ 275 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKS-------KWEKSNKALI 275 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhHHHH
Confidence 66666677777777777777666666643 333455666666666666665554443332 2233344777
Q ss_pred HHHHHHHHHHHHHHhHH
Q 023704 210 SVAQQIERLQAELANAE 226 (278)
Q Consensus 210 ~m~~e~eklrael~n~~ 226 (278)
.|+-|-..+..++....
T Consensus 276 ~m~eer~~~~~~~~~~~ 292 (309)
T PF09728_consen 276 EMAEERQKLEKELEKLK 292 (309)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77776555555554443
No 299
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=85.86 E-value=45 Score=34.21 Aligned_cols=72 Identities=15% Similarity=0.186 Sum_probs=36.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhh
Q 023704 107 LYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGR 184 (278)
Q Consensus 107 l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~r 184 (278)
.++.+-||.+. +..+++++.-++.+..++....+....-=..++.|+.+.+ -|-.+..+.+.....||+.+|
T Consensus 231 q~Ee~skLlsq---l~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~Ele---DkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 231 QQEENSKLLSQ---LVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELE---DKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhc
Confidence 34444555555 4555555555566555555555555555455555544433 233344444444444555444
No 300
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=85.81 E-value=15 Score=28.81 Aligned_cols=41 Identities=20% Similarity=0.207 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHH
Q 023704 166 MAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEK 206 (278)
Q Consensus 166 l~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~mek 206 (278)
...|..|+..|+..+.+.+..|+--+..-.+.+.++..+||
T Consensus 54 ~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E~~~~~~l~~~Ek 94 (96)
T PF08647_consen 54 KDALDNEMKKLNTQLSKSSELIEQLKETEKEFVRKLKNLEK 94 (96)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455555555555555555555555555555555555554
No 301
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=85.76 E-value=42 Score=33.82 Aligned_cols=11 Identities=18% Similarity=0.256 Sum_probs=6.3
Q ss_pred HHHHHHHHHHH
Q 023704 46 HLEDRIAIQHS 56 (278)
Q Consensus 46 ~Le~~L~~q~~ 56 (278)
+|-.+|..|..
T Consensus 325 ll~sqleSqr~ 335 (493)
T KOG0804|consen 325 LLTSQLESQRK 335 (493)
T ss_pred hhhhhhhHHHH
Confidence 45566666655
No 302
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.74 E-value=16 Score=33.63 Aligned_cols=81 Identities=15% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhh
Q 023704 104 VRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKG 183 (278)
Q Consensus 104 ~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~ 183 (278)
++.+.+...++--.....+.+++.+.+..+++++-....++=.+.--.|++|+..+++ ++..|..-+..++.|+.+.
T Consensus 43 ~nS~~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~---elEvl~~n~Q~lkeE~dd~ 119 (246)
T KOG4657|consen 43 MNSLVEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQS---ELEVLRRNLQLLKEEKDDS 119 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhH
Q ss_pred hhhh
Q 023704 184 RAAI 187 (278)
Q Consensus 184 raa~ 187 (278)
+..|
T Consensus 120 keiI 123 (246)
T KOG4657|consen 120 KEII 123 (246)
T ss_pred HHHH
No 303
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=85.59 E-value=70 Score=36.24 Aligned_cols=50 Identities=16% Similarity=0.427 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023704 113 KLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE 162 (278)
Q Consensus 113 kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d 162 (278)
+++--++....+..++..+..++..+....+++.+.++.+..++.++.++
T Consensus 872 ~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~ 921 (1294)
T KOG0962|consen 872 KIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSE 921 (1294)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHH
Confidence 33444677777788888888888888888888888888888888877765
No 304
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=85.46 E-value=26 Score=31.07 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHhH
Q 023704 73 VALKQELSLAEQELRHLSSVAASVKAER 100 (278)
Q Consensus 73 ~~L~qEL~laqhEL~~l~~~i~~~~ae~ 100 (278)
..|.|-|.-.+..|..+...+....+..
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~ 53 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQ 53 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555544444443
No 305
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=85.43 E-value=23 Score=32.40 Aligned_cols=105 Identities=15% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHH
Q 023704 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQR 201 (278)
Q Consensus 123 ~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~ 201 (278)
.++.-...++.++..+......+...+...-+.+.+|... ...-+.+...++.+.+-....-...+.-|+.+..---+.
T Consensus 58 Tl~~sw~~~~~E~e~~a~~H~~la~~L~~~~~~~~~f~~~qk~~rKk~e~~~ek~~K~~~~~~k~~~ksKk~Ye~~Cke~ 137 (240)
T cd07672 58 TLKRSLDVFKQQIDNVGQSHIQLAQTLRDEAKKMEDFRERQKLARKKIELIMDAIHKQRAMQFKKTMESKKNYEQKCRDK 137 (240)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhH-----HHHHHHHHHHHHHHHhHHh
Q 023704 202 EIMEKNI-----ISVAQQIERLQAELANAEK 227 (278)
Q Consensus 202 q~meknl-----~~m~~e~eklrael~n~~~ 227 (278)
....+.+ ..+.+|++|+++-|..+..
T Consensus 138 ~~a~~~~~~~~~~~~~ke~~K~~~Kl~K~~~ 168 (240)
T cd07672 138 DEAEQAVNRNANLVNVKQQEKLFAKLAQSKQ 168 (240)
T ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHHH
No 306
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=85.43 E-value=17 Score=29.03 Aligned_cols=35 Identities=9% Similarity=0.286 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDL 156 (278)
Q Consensus 122 e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL 156 (278)
..++..+..+...+..+......|..++..+++.|
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLREQLKELQEKI 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444333
No 307
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=85.31 E-value=29 Score=34.27 Aligned_cols=47 Identities=11% Similarity=0.225 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhh
Q 023704 143 QEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIEC 189 (278)
Q Consensus 143 qeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ 189 (278)
+-+..+.+.|.+.++..++...+++.+..++..|..+++-.|..|+-
T Consensus 345 ~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~ 391 (458)
T COG3206 345 ALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYET 391 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHH
Confidence 33555555666666666666666666666666666666666665543
No 308
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=85.31 E-value=35 Score=32.54 Aligned_cols=129 Identities=21% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH---HHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHH
Q 023704 45 HHLEDRIAIQHS---DIQSLLQDN-QRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRV 120 (278)
Q Consensus 45 ~~Le~~L~~q~~---eIq~ll~dn-qrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~ 120 (278)
+..-+.+..... ++++-+.=| ..+..+.-...++|+..+-|..+|...+..-+..+ - +||+|
T Consensus 27 ~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~k------e-----rLEtE--- 92 (305)
T PF14915_consen 27 KKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNK------E-----RLETE--- 92 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHH------H-----HHHHH---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhh
Q 023704 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAI 187 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~raa~ 187 (278)
++.++.-|..+-.+...-.+.+.+|.--.++-..+--.++.. +.-+..|+...+-|.+.|.++++.|
T Consensus 93 iES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~ 160 (305)
T PF14915_consen 93 IESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKF 160 (305)
T ss_pred HHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHH
No 309
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=85.17 E-value=7.4 Score=28.09 Aligned_cols=16 Identities=13% Similarity=0.235 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 023704 140 VIKQEMIKDLNEINGD 155 (278)
Q Consensus 140 ~~rqeL~~evq~LekD 155 (278)
...++|..+|.+|..|
T Consensus 10 ~dVq~L~~kvdqLs~d 25 (56)
T PF04728_consen 10 SDVQTLNSKVDQLSSD 25 (56)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333444444433
No 310
>PF14182 YgaB: YgaB-like protein
Probab=85.04 E-value=5.4 Score=30.71 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhh
Q 023704 149 LNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIEC 189 (278)
Q Consensus 149 vq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ 189 (278)
.+.|+++|.+.. +..++..++.||..++++|......|+-
T Consensus 26 CqeIE~eL~~l~-~ea~l~~i~~EI~~mkk~Lk~Iq~~Fe~ 65 (79)
T PF14182_consen 26 CQEIEKELKELE-REAELHSIQEEISQMKKELKEIQRVFEK 65 (79)
T ss_pred HHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443332 2455666677777777777766666653
No 311
>COG5293 Predicted ATPase [General function prediction only]
Probab=84.90 E-value=48 Score=33.69 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=11.7
Q ss_pred hccHHHHHHHHHHHHHHHHhhhhhh
Q 023704 163 SKDMAAIKAEIETERQEIHKGRAAI 187 (278)
Q Consensus 163 ~~kl~~LkaEIe~LrqEl~~~raa~ 187 (278)
-.|+.++..-|..+++|+-+....+
T Consensus 405 l~k~~~~~~~i~~lkhe~l~~~~r~ 429 (591)
T COG5293 405 LRKLHALDQYIGTLKHECLDLEERI 429 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444455555555544444333
No 312
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=84.85 E-value=28 Score=30.94 Aligned_cols=57 Identities=16% Similarity=0.321 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhh
Q 023704 129 DRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIE 188 (278)
Q Consensus 129 ~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e 188 (278)
..+...|.+|....-+|..+.+.+...+... .+.+..|+.+++.+.+++..++-.|.
T Consensus 127 ~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~---~~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 127 KELESEIKELEMKILELQRQAAKLKEKKEAK---DKEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444433333333322 46667777777777777777776654
No 313
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=84.62 E-value=21 Score=36.05 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023704 120 VIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARD 161 (278)
Q Consensus 120 ~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~ 161 (278)
..+-+..++..++.++.++.....++..+++.++++|..+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 132 AFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 355566666666666666666666666666666666666554
No 314
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=84.58 E-value=15 Score=30.06 Aligned_cols=72 Identities=13% Similarity=0.238 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 68 LAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIK 147 (278)
Q Consensus 68 la~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~ 147 (278)
+..+...|.+++.-.+.++.+.+.+...+++.- -++.+++-..+..++..+..++... +
T Consensus 6 ~~~q~~~l~~~v~~lRed~r~SEdrsa~SRa~m-----------------hrRlDElV~Rv~~lEs~~~~lk~dV----s 64 (112)
T PF07439_consen 6 LHQQLGTLNAEVKELREDIRRSEDRSAASRASM-----------------HRRLDELVERVTTLESSVSTLKADV----S 64 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-----------------HHhHHHHHHHHHHHHHHHHHHHhhH----H
Confidence 445566677777777777777777777766666 3444444444444444433333332 3
Q ss_pred HHHHHHHHHHHHh
Q 023704 148 DLNEINGDLAKAR 160 (278)
Q Consensus 148 evq~LekDL~~~~ 160 (278)
+++..+.|+.+|+
T Consensus 65 emKpVT~dV~rwk 77 (112)
T PF07439_consen 65 EMKPVTDDVKRWK 77 (112)
T ss_pred hccchHHHHHHHH
Confidence 3455555655554
No 315
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=84.49 E-value=26 Score=34.20 Aligned_cols=102 Identities=11% Similarity=0.250 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHH
Q 023704 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIME 205 (278)
Q Consensus 127 El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~me 205 (278)
-+..++..+.++......-..+|.+-++=|+.--.. .++...++.++..++.++..+...+..-...-++..+++..+.
T Consensus 235 ~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK 314 (359)
T PF10498_consen 235 ALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVK 314 (359)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444432222 4445555555555555555555555555544444444443332
Q ss_pred H-------------hHHHHHHHHHHHHHHHHhHHhh
Q 023704 206 K-------------NIISVAQQIERLQAELANAEKR 228 (278)
Q Consensus 206 k-------------nl~~m~~e~eklrael~n~~~r 228 (278)
+ -||.+.+=|-|||.||..++-|
T Consensus 315 ~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvr 350 (359)
T PF10498_consen 315 QEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVR 350 (359)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 2 2556666777777777776644
No 316
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=84.42 E-value=20 Score=29.02 Aligned_cols=43 Identities=14% Similarity=0.273 Sum_probs=30.6
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHH
Q 023704 164 KDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEK 206 (278)
Q Consensus 164 ~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~mek 206 (278)
.-+..|...|...++.+..++..++.-+..-.+-.-..++||+
T Consensus 68 ~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~lek 110 (141)
T TIGR02473 68 RFIRQLDQRIQQQQQELALLQQEVEAKRERLLEARRELKALEK 110 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777777777777776666666666665
No 317
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=84.02 E-value=7.8 Score=40.14 Aligned_cols=63 Identities=19% Similarity=0.336 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhh
Q 023704 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKG 183 (278)
Q Consensus 118 lr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~ 183 (278)
.|-.+.+..||.+++..-|+|+++..++..+++.+.+.+-+.+. .|.+|+.+|+..+..+..+
T Consensus 85 ~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~---eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 85 KRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQL---ELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHH---HHHHHHhHHHHHHHHHHHH
Confidence 56667888899999999999999999999999999988776433 3445556666555544433
No 318
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=83.97 E-value=18 Score=36.26 Aligned_cols=107 Identities=20% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHH--HHHHHHHHhhhhh
Q 023704 109 EKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEI--ETERQEIHKGRAA 186 (278)
Q Consensus 109 ~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEI--e~LrqEl~~~raa 186 (278)
++..||-.||....-++++++.++..+.+...+..-...+...|++-|.+ ...|.+|+..+ +..++||..+|.+
T Consensus 242 ehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~e----a~rl~elreg~e~e~~rkelE~lR~~ 317 (575)
T KOG4403|consen 242 EHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDE----APRLSELREGVENETSRKELEQLRVA 317 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhh----hhhhhhhhcchhHHHHHHHHHHHHHH
Q ss_pred hhhhhhhchhh------------------------HHHHHHHHHhHHHHHHHHHHHH
Q 023704 187 IECEKKNRASN------------------------HEQREIMEKNIISVAQQIERLQ 219 (278)
Q Consensus 187 ~e~ekk~~~e~------------------------~eq~q~meknl~~m~~e~eklr 219 (278)
++.=-|....+ --++|--||-|....-.+|||+
T Consensus 318 L~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklk 374 (575)
T KOG4403|consen 318 LEKAEKELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLK 374 (575)
T ss_pred HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
No 319
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=83.94 E-value=32 Score=30.98 Aligned_cols=69 Identities=17% Similarity=0.197 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhh
Q 023704 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIEC 189 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~raa~e~ 189 (278)
...+.++|..++.+|+.+...|+....++..--+.|.+-..+ .+|.-++...+..|.+|+..++.....
T Consensus 145 ~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~ 214 (221)
T PF05700_consen 145 LKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAE 214 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777778888888877777766666555566655555 677777777777777777766655443
No 320
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=83.93 E-value=35 Score=31.35 Aligned_cols=13 Identities=46% Similarity=0.621 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHhH
Q 023704 213 QQIERLQAELANA 225 (278)
Q Consensus 213 ~e~eklrael~n~ 225 (278)
.|++.|+.++..|
T Consensus 103 ~Ea~~lq~el~~a 115 (246)
T PF00769_consen 103 EEAEELQEELEEA 115 (246)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3555555555444
No 321
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=83.76 E-value=18 Score=27.81 Aligned_cols=46 Identities=9% Similarity=0.190 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023704 51 IAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASV 96 (278)
Q Consensus 51 L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~ 96 (278)
|.....|+..+..+..........+...+...-.|++.+...+-.+
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eL 51 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYEL 51 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444445555544444433
No 322
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=83.59 E-value=10 Score=28.50 Aligned_cols=60 Identities=23% Similarity=0.283 Sum_probs=32.3
Q ss_pred hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHhhH
Q 023704 163 SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKRA 229 (278)
Q Consensus 163 ~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael~n~~~r~ 229 (278)
+.+|..|+.|-+.|...-.+.+..|.--+....+ .|+.+..+...++++..++.+.+.|.
T Consensus 11 De~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e-------~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 11 DEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKE-------LEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566666666666666666666666544443333 33444444455555555555554443
No 323
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=83.58 E-value=78 Score=35.10 Aligned_cols=51 Identities=6% Similarity=0.160 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHH
Q 023704 167 AAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIER 217 (278)
Q Consensus 167 ~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~ek 217 (278)
..|+..++..+..+..+=.-+++.++.+.++..=.+-..++|-.+..-+.+
T Consensus 535 ~~l~~~~~~s~~d~s~l~~kld~~~~~~d~n~~~~~~~~~~l~~~~~~~~~ 585 (1041)
T KOG0243|consen 535 TKLRRSLEESQDDLSSLFEKLDRKDRLDDDNQEVIDDFQSQLSENLSTLHG 585 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHhhhhhHHHHHHHH
Confidence 444555555555555555566666666666655555555555555444433
No 324
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.20 E-value=55 Score=33.08 Aligned_cols=40 Identities=15% Similarity=0.308 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhh
Q 023704 143 QEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRA 185 (278)
Q Consensus 143 qeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~ra 185 (278)
+|+.+-|...+.||.+...| -.+|+.+++.+...++|.=+
T Consensus 392 kEi~gniRKq~~DI~Kil~e---treLqkq~ns~se~L~Rsfa 431 (521)
T KOG1937|consen 392 KEIDGNIRKQEQDIVKILEE---TRELQKQENSESEALNRSFA 431 (521)
T ss_pred HHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHH
Confidence 33444444444444443333 24667777777776665433
No 325
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=83.13 E-value=3.9 Score=41.17 Aligned_cols=39 Identities=18% Similarity=0.361 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHH---HHhhh-hccHHHHHHHHHHHHHHH
Q 023704 142 KQEMIKDLNEINGDLA---KARDE-SKDMAAIKAEIETERQEI 180 (278)
Q Consensus 142 rqeL~~evq~LekDL~---~~~~d-~~kl~~LkaEIe~LrqEl 180 (278)
..+|..++..++++++ ....+ .+||++|+.|++.|+.++
T Consensus 78 asELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 78 AAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444 22222 445555556666665555
No 326
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=82.95 E-value=22 Score=32.41 Aligned_cols=57 Identities=19% Similarity=0.287 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 023704 166 MAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAEL 222 (278)
Q Consensus 166 l~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael 222 (278)
...+++++++|+.++++.....|-..+-...+.-|.+..-+=+.....|-.+||.+|
T Consensus 153 ~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 153 NDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 344445555555555555555554444444444555555555555555666666655
No 327
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=82.93 E-value=30 Score=29.79 Aligned_cols=23 Identities=17% Similarity=0.442 Sum_probs=15.9
Q ss_pred HhHHHHHHHHHHHHHHHHhHHhh
Q 023704 206 KNIISVAQQIERLQAELANAEKR 228 (278)
Q Consensus 206 knl~~m~~e~eklrael~n~~~r 228 (278)
.+|+.-..+++.||.+|.+-+.+
T Consensus 145 ~Dy~~~~~~~~~l~~~i~~l~rk 167 (177)
T PF13870_consen 145 RDYDKTKEEVEELRKEIKELERK 167 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677788888888766644
No 328
>PRK13997 potassium-transporting ATPase subunit C; Provisional
Probab=82.72 E-value=1.9 Score=38.50 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=25.4
Q ss_pred ccCceEE-------EeecCCCcccccCCccCCCCCCCCCCCCCCCCch
Q 023704 3 IYGNSLH-------TTLHNHSQFTMSGRRVLREPPLSTRALPPQHSPS 43 (278)
Q Consensus 3 ifG~tli-------vtfhp~~svTleGD~ydpeG~LsGGs~p~~~~~l 43 (278)
|-|+.|| -+|||.+|.| + |||.+ ||||.-.++.|.
T Consensus 54 vvGS~LIgQ~Ft~~~YF~~RPSa~---~-y~~~~--SggSNl~psnp~ 95 (193)
T PRK13997 54 VIGSKLIGQNFTDPRYFHGRVSSI---E-YKAEA--SGSNNYAPSNPD 95 (193)
T ss_pred EEeeeeecCCCCCCCCccCCCCCC---C-CCccc--ccccCCCCCCHH
Confidence 5688899 8999998876 2 88765 788844445554
No 329
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=82.62 E-value=14 Score=31.88 Aligned_cols=76 Identities=12% Similarity=0.249 Sum_probs=54.9
Q ss_pred HHHHhhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHh
Q 023704 107 LYEKSLKLDAELR----VIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHK 182 (278)
Q Consensus 107 l~~k~~kleaelr----~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~ 182 (278)
++++--++|-++- ..+-.++-+...+.++.+|....+.|...+.-+++|++=|.+...+.-.+ +++.+..++..
T Consensus 49 imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~--~veel~eqV~e 126 (157)
T COG3352 49 IMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRG--IVEELEEQVNE 126 (157)
T ss_pred HHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHH--HHHHHHHHHHH
Confidence 5555556666665 56777888888999999999999999999999999999888774443333 55555544444
Q ss_pred hh
Q 023704 183 GR 184 (278)
Q Consensus 183 ~r 184 (278)
++
T Consensus 127 l~ 128 (157)
T COG3352 127 LK 128 (157)
T ss_pred HH
Confidence 33
No 330
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=82.41 E-value=90 Score=35.00 Aligned_cols=54 Identities=15% Similarity=0.123 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhh
Q 023704 134 DIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECE 190 (278)
Q Consensus 134 ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~e 190 (278)
.+++....-++|+.++...++.|+....+ -...+..++.++|.....+..++--
T Consensus 259 ~i~~~~~~N~~Ls~~L~~~t~~~n~l~~~---~~~~~~~l~~~~q~~~~i~eQi~~l 312 (1109)
T PRK10929 259 SIVAQFKINRELSQALNQQAQRMDLIASQ---QRQAASQTLQVRQALNTLREQSQWL 312 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35555555666666666666666654333 2333444444444444444444433
No 331
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=82.31 E-value=22 Score=37.25 Aligned_cols=92 Identities=17% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Q 023704 115 DAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNR 194 (278)
Q Consensus 115 eaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~ 194 (278)
|.++++...+.++|.+++++|..+....+.+..++..-+..+.+...+-+...-=..=++...+...+....|-.=.+-=
T Consensus 75 e~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl 154 (632)
T PF14817_consen 75 ENEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRL 154 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHHHHHH
Q 023704 195 ASNHEQREIMEK 206 (278)
Q Consensus 195 ~e~~eq~q~mek 206 (278)
...++|.|.|+.
T Consensus 155 ~~~~~~~q~~~R 166 (632)
T PF14817_consen 155 QGQVEQLQDIQR 166 (632)
T ss_pred HHHHHHHHHHHh
No 332
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=82.07 E-value=40 Score=30.75 Aligned_cols=97 Identities=10% Similarity=0.150 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhh---------
Q 023704 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKK--------- 192 (278)
Q Consensus 122 e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk--------- 192 (278)
..+.+++..+..++.+....-..+-.++....+-..+...+.. .-++++++.+..++........=|+
T Consensus 115 ~kl~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar~k~e~a~~~~~---~~~~~~eKak~k~~~~~~k~~~akNeY~l~l~~a 191 (237)
T cd07657 115 QQIDEQYKKLTDEVEKLKSEYQKLLEDYKAAKSKFEEAVVKGG---RGGRKLDKARDKYQKACRKLHLCHNDYVLALLEA 191 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555554444433321 1244444444444444333333222
Q ss_pred ----------hchhhHHHHHHHHHhHHHHHHHHHHHHHH
Q 023704 193 ----------NRASNHEQREIMEKNIISVAQQIERLQAE 221 (278)
Q Consensus 193 ----------~~~e~~eq~q~meknl~~m~~e~eklrae 221 (278)
.=+++++.+|.|+.++|.+.+++=.-=++
T Consensus 192 N~~q~~yY~~~lP~ll~~lQ~l~E~ri~~~k~~l~~~~~ 230 (237)
T cd07657 192 QEHEEDYRTLLLPGLLNSLQSLQEEFITQWKKILQEYLR 230 (237)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23578899999999999998877444333
No 333
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=82.05 E-value=46 Score=31.35 Aligned_cols=91 Identities=14% Similarity=0.153 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHH
Q 023704 100 RDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQE 179 (278)
Q Consensus 100 ~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqE 179 (278)
.-.++|..+.-+...|.. +.+.+.--..|..+|.+|....- -+.++..|+++|.+...+.. ..+++|..++.+
T Consensus 122 ~~d~yR~~LK~IR~~E~s---l~p~R~~r~~l~d~I~kLk~k~P-~s~kl~~LeqELvraEae~l---vaEAqL~n~kR~ 194 (271)
T PF13805_consen 122 RLDQYRIHLKSIRNREES---LQPSRDRRRKLQDEIAKLKYKDP-QSPKLVVLEQELVRAEAENL---VAEAQLSNIKRQ 194 (271)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-T-TTTTHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HhHHHHHhHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHHhh---HHHHHHHHhhHH
Confidence 355667776666667766 44455555556667776655433 25567777777777665532 334556666554
Q ss_pred HHhhhhhhhhhhhhchhhHH
Q 023704 180 IHKGRAAIECEKKNRASNHE 199 (278)
Q Consensus 180 l~~~raa~e~ekk~~~e~~e 199 (278)
+++.+|.+.=.+-.|.-|
T Consensus 195 --~lKEa~~~~f~Al~E~aE 212 (271)
T PF13805_consen 195 --KLKEAYSLKFDALIERAE 212 (271)
T ss_dssp --HHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHH
Confidence 455555555444444443
No 334
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=81.94 E-value=33 Score=32.29 Aligned_cols=43 Identities=19% Similarity=0.313 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023704 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (278)
Q Consensus 118 lr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~ 160 (278)
.|.++..+.|+..+..++.+.....+++..+|..+..-|.++.
T Consensus 199 ~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~ 241 (269)
T PF05278_consen 199 DRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELE 241 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666666655555555555554444444433
No 335
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=81.85 E-value=24 Score=28.16 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=12.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHH
Q 023704 107 LYEKSLKLDAELRVIESMHAELDRV 131 (278)
Q Consensus 107 l~~k~~kleaelr~~e~lk~El~ql 131 (278)
+......+|.+++.++-...+|..+
T Consensus 22 l~~q~~~le~~~~E~~~v~~eL~~l 46 (110)
T TIGR02338 22 VATQKQQVEAQLKEAEKALEELERL 46 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3334445555555555555555544
No 336
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=81.83 E-value=95 Score=34.84 Aligned_cols=87 Identities=10% Similarity=0.036 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh--hccHHHHHHHHHHHHHH---HHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHH
Q 023704 138 LCVIKQEMIKDLNEINGDLAKARDE--SKDMAAIKAEIETERQE---IHKGRAAIECEKKNRASNHEQREIMEKNIISVA 212 (278)
Q Consensus 138 l~~~rqeL~~evq~LekDL~~~~~d--~~kl~~LkaEIe~LrqE---l~~~raa~e~ekk~~~e~~eq~q~meknl~~m~ 212 (278)
+...++.+..+++.+++.++.++.. .++..+.+.-++..... ....-..+..|-..|.++.+.+..-.+++-.+.
T Consensus 206 ~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l~ 285 (1109)
T PRK10929 206 ARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAEQSGDLPKSIVAQFKINRELSQALNQQAQRMDLIA 285 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555666666666665554 34444444444443332 212222344444556666665555555555555
Q ss_pred HHHHHHHHHHHh
Q 023704 213 QQIERLQAELAN 224 (278)
Q Consensus 213 ~e~eklrael~n 224 (278)
++-...+..+.+
T Consensus 286 ~~~~~~~~~l~~ 297 (1109)
T PRK10929 286 SQQRQAASQTLQ 297 (1109)
T ss_pred HHHHHHHHHHHH
Confidence 544443333333
No 337
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.78 E-value=46 Score=31.22 Aligned_cols=51 Identities=20% Similarity=0.289 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023704 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAA 94 (278)
Q Consensus 44 ~~~Le~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~ 94 (278)
+..+.......+.+|+.+..+-..+......++.++.-.+.+|..++..|.
T Consensus 40 l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~ 90 (265)
T COG3883 40 LSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIA 90 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555566666655555555555555555555555554444444
No 338
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=81.77 E-value=49 Score=31.50 Aligned_cols=95 Identities=16% Similarity=0.200 Sum_probs=61.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhH-------------HHHHHHHHHHhhhhHHHHHHHHH
Q 023704 57 DIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAER-------------DAEVRELYEKSLKLDAELRVIES 123 (278)
Q Consensus 57 eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~-------------e~~~r~l~~k~~kleaelr~~e~ 123 (278)
.|+..-.+|..|.....+|.+.++-.+-+..++.+.+.+++++. |+|.|.- ..-+ +...+-
T Consensus 91 ~i~etkeeNlkLrTd~eaL~dq~adLhgD~elfReTeAq~ese~~a~aseNaarneeelqwrrd--eanf----ic~~Eg 164 (389)
T KOG4687|consen 91 DIEETKEENLKLRTDREALLDQKADLHGDCELFRETEAQFESEKMAGASENAARNEEELQWRRD--EANF----ICAHEG 164 (389)
T ss_pred HHHHHHHHhHhhhHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcccccccccchHHHHhhHH--HHHH----HHHHHH
Confidence 56666677999999999999999999999999999999888775 4444421 1111 333455
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 023704 124 MHAELDRVRADIEKL-------CVIKQEMIKDLNEINGDLA 157 (278)
Q Consensus 124 lk~El~qlr~ei~~l-------~~~rqeL~~evq~LekDL~ 157 (278)
+++.-.++..++..+ ..+|.++.-++.+|..+|-
T Consensus 165 Lkak~a~LafDLkamideKEELimERDa~kcKa~RLnhELf 205 (389)
T KOG4687|consen 165 LKAKCAGLAFDLKAMIDEKEELIMERDAMKCKAARLNHELF 205 (389)
T ss_pred HHHHhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHhhhHHH
Confidence 555555555444443 4444444555555555554
No 339
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=81.55 E-value=31 Score=32.71 Aligned_cols=51 Identities=22% Similarity=0.339 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023704 166 MAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAE 226 (278)
Q Consensus 166 l~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael~n~~ 226 (278)
|++.++||+.|||=+...|+.+ .+.=+...|=+|.+.-+=-||..=|.++|
T Consensus 119 LKEARkEIkQLkQvieTmrssL----------~ekDkGiQKYFvDINiQN~KLEsLLqsME 169 (305)
T PF15290_consen 119 LKEARKEIKQLKQVIETMRSSL----------AEKDKGIQKYFVDINIQNKKLESLLQSME 169 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh----------chhhhhHHHHHhhhhhhHhHHHHHHHHHH
Confidence 4666666666666666665544 33355666667777777777777776666
No 340
>PRK00315 potassium-transporting ATPase subunit C; Reviewed
Probab=81.52 E-value=2.1 Score=38.30 Aligned_cols=38 Identities=16% Similarity=0.164 Sum_probs=26.8
Q ss_pred ccCceEE-------EeecCCCcccccCCccCCCCCCCCCCCCCCCCch
Q 023704 3 IYGNSLH-------TTLHNHSQFTMSGRRVLREPPLSTRALPPQHSPS 43 (278)
Q Consensus 3 ifG~tli-------vtfhp~~svTleGD~ydpeG~LsGGs~p~~~~~l 43 (278)
|.|+.|| -+|||.+|-+ +.+-||+.+ ||||.-.++.|.
T Consensus 50 vvGS~LIgQ~F~~~~yF~~RPSa~-~~~~y~~~~--SggSNl~psnp~ 94 (193)
T PRK00315 50 VVGSALIGQNFTGPGYFHGRPSAT-APMPYNPQA--SGGSNLAPSNPA 94 (193)
T ss_pred EeeehhcCCCCCCCCCcCCCCCcC-CCCCCCccc--ccccCCCCCCHH
Confidence 5688888 8899997775 444688765 788854445554
No 341
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=81.50 E-value=0.46 Score=51.03 Aligned_cols=35 Identities=26% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023704 60 SLLQDNQRLAATHVALKQELSLAEQELRHLSSVAA 94 (278)
Q Consensus 60 ~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~ 94 (278)
..-.....+-.+...|..|+..+..+|........
T Consensus 339 ~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~ 373 (859)
T PF01576_consen 339 EANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAA 373 (859)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444555555566666666666666554443
No 342
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=81.47 E-value=51 Score=31.65 Aligned_cols=80 Identities=9% Similarity=0.242 Sum_probs=46.3
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhccHHHHHHHHHHHHHHHH
Q 023704 105 RELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR---DESKDMAAIKAEIETERQEIH 181 (278)
Q Consensus 105 r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~---~d~~kl~~LkaEIe~LrqEl~ 181 (278)
..|+.+-..+-++ ..+++..-.|+...+.+-.....+...++..+.++|.+-. +|++-+-.+++-|-+|++|.+
T Consensus 276 ~~l~q~fr~a~~~---lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk~et~ 352 (384)
T KOG0972|consen 276 ASLMQKFRRATDT---LSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLKEETQ 352 (384)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHH
Confidence 3344444433333 2333444445555555556666666677777777777644 446667777777777777776
Q ss_pred hhhhhh
Q 023704 182 KGRAAI 187 (278)
Q Consensus 182 ~~raa~ 187 (278)
.+.-.|
T Consensus 353 ~mnv~i 358 (384)
T KOG0972|consen 353 TMNVQI 358 (384)
T ss_pred hhhhhe
Confidence 655444
No 343
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=81.32 E-value=51 Score=31.43 Aligned_cols=87 Identities=25% Similarity=0.381 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHH
Q 023704 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIES 123 (278)
Q Consensus 44 ~~~Le~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~ 123 (278)
+..|.+.|...+...++-+..|-.|-..-..|.-++...+..|--++..+...+-+- -+|+.-+|..-+..+.
T Consensus 79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~-------~eK~~elEr~K~~~d~ 151 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREY-------REKIRELERQKRAHDS 151 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 567888888888888888888888888888888899999998888888877555444 2344444555555555
Q ss_pred HHHHHHHHHHHHHH
Q 023704 124 MHAELDRVRADIEK 137 (278)
Q Consensus 124 lk~El~qlr~ei~~ 137 (278)
++.++..|+.++..
T Consensus 152 L~~e~~~Lre~L~~ 165 (302)
T PF09738_consen 152 LREELDELREQLKQ 165 (302)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555543
No 344
>PRK11281 hypothetical protein; Provisional
Probab=81.27 E-value=99 Score=34.70 Aligned_cols=88 Identities=10% Similarity=0.113 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh--hccHHHHHHHHHHHHH-HH-H--hhhhhhhhhhhhchhhHHHHHHHHHhHHHH
Q 023704 138 LCVIKQEMIKDLNEINGDLAKARDE--SKDMAAIKAEIETERQ-EI-H--KGRAAIECEKKNRASNHEQREIMEKNIISV 211 (278)
Q Consensus 138 l~~~rqeL~~evq~LekDL~~~~~d--~~kl~~LkaEIe~Lrq-El-~--~~raa~e~ekk~~~e~~eq~q~meknl~~m 211 (278)
+...+..+..+++.+++.++.++.- .+++.+.++.++.... +. . ....-+-.|-..|..+.+.+..-.+++-++
T Consensus 225 ~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se~~~~~a~~~~~~~~~~~~p~i~~~~~~N~~Ls~~L~~~t~~~~~l 304 (1113)
T PRK11281 225 LQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEKTVQEAQSQDEAARIQANPLVAQELEINLQLSQRLLKATEKLNTL 304 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666666666666655 3344444444433311 10 0 001113334455666655555555555555
Q ss_pred HHHHHHHHHHHHhH
Q 023704 212 AQQIERLQAELANA 225 (278)
Q Consensus 212 ~~e~eklrael~n~ 225 (278)
.++-.+.+..+.+.
T Consensus 305 ~~~~~~~~~~l~~~ 318 (1113)
T PRK11281 305 TQQNLRVKNWLDRL 318 (1113)
T ss_pred HHHHHHHHHHHHHH
Confidence 55444444444443
No 345
>PLN02678 seryl-tRNA synthetase
Probab=81.25 E-value=7.7 Score=38.88 Aligned_cols=33 Identities=9% Similarity=0.167 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNE 151 (278)
Q Consensus 119 r~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~ 151 (278)
..+-.+..+..++..++..|.+.++.++.+|..
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~ 65 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAK 65 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555556666666666666654
No 346
>PRK13995 potassium-transporting ATPase subunit C; Provisional
Probab=81.22 E-value=2.5 Score=38.08 Aligned_cols=39 Identities=10% Similarity=-0.020 Sum_probs=25.4
Q ss_pred ccCceEE-------EeecCCCcccc-c--------CCccCCCCCCCCCCCCCCCCch
Q 023704 3 IYGNSLH-------TTLHNHSQFTM-S--------GRRVLREPPLSTRALPPQHSPS 43 (278)
Q Consensus 3 ifG~tli-------vtfhp~~svTl-e--------GD~ydpeG~LsGGs~p~~~~~l 43 (278)
|.|+.|| =+|||.+|.|- + .+-||+.+ ||||.-.+++|.
T Consensus 49 vvGS~LIgQ~Ft~~~YF~~RPSa~~y~~~~~~~~~~~~y~~~~--SggSNlgpsnp~ 103 (203)
T PRK13995 49 EVGSELIGQSFTDARFFKGRVSAVNYNTYTKEDKGNGNYGGVS--SGSQNYAPTNPE 103 (203)
T ss_pred EEeeeeecCCCCCCCCccCCCcccccccccccccccCCCCccc--ccccCCCCCCHH
Confidence 5788888 88999977762 1 22466554 788854445554
No 347
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=81.20 E-value=45 Score=30.74 Aligned_cols=99 Identities=19% Similarity=0.221 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 023704 48 EDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSS-VAASVKAERDAEVRELYEKSLKLDAELRVIESMHA 126 (278)
Q Consensus 48 e~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~-~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~ 126 (278)
..+-...+.+.|.-....+|....|.+-+.-+.++++.|..-.. .+...-.|. | ... +..+.+...
T Consensus 69 ~~~a~~aq~e~q~Aa~~yerA~~~h~aAKe~v~laEq~l~~~~~~~~D~~wqEm------L-n~A------~~kVneAE~ 135 (239)
T PF05276_consen 69 RRKAKEAQQEAQKAALQYERANSMHAAAKEMVALAEQSLMSDSNWTFDPAWQEM------L-NHA------TQKVNEAEQ 135 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccHHHHHH------H-HHH------HHHHHHHHH
Confidence 33334444477777777777777777777666666665544321 122111111 2 111 233444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAKA 159 (278)
Q Consensus 127 El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~ 159 (278)
+...+..+-+........+...|+.|++++.+.
T Consensus 136 ek~~ae~eH~~~~~~~~~ae~~v~~Lek~lkr~ 168 (239)
T PF05276_consen 136 EKTRAEREHQRRARIYNEAEQRVQQLEKKLKRA 168 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677777788888899999999999988773
No 348
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=81.19 E-value=64 Score=32.48 Aligned_cols=107 Identities=16% Similarity=0.266 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hh-hccH-HHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 023704 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR--------DE-SKDM-AAIKAEIETERQEIHKGRAAIECEKKN 193 (278)
Q Consensus 124 lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~--------~d-~~kl-~~LkaEIe~LrqEl~~~raa~e~ekk~ 193 (278)
+...+.+.+..++.+.....+++.+.+.+-.+|.+-. .+ .++| .-++..++++++.+ ...+..+=+.
T Consensus 82 l~~~~~~~~eq~~~l~~~~~ql~~~~~~~~~~i~e~~~~~~~el~~~~~~~Ll~~~~~~~e~f~e~l---~~~~~~s~~~ 158 (448)
T COG1322 82 LQQQLLQSREQLQLLIESLAQLSSEFQELANEIFEELNRRLAELNQQNLKQLLKPLREVLEKFREQL---EQRIHESAEE 158 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 3344444455555555555555555555555554422 11 2222 22233334444433 3345556677
Q ss_pred chhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHhh-HHHHH
Q 023704 194 RASNHEQREIMEKNIISVAQQIERLQAELANAEKR-ARAAA 233 (278)
Q Consensus 194 ~~e~~eq~q~meknl~~m~~e~eklrael~n~~~r-~~a~~ 233 (278)
+..+++++..|-.++-.|++|+-.|-+=|.+...| .||-.
T Consensus 159 ~~~~~~~i~~~lg~~~~la~e~~~Lt~~Lk~~ktrG~wGEv 199 (448)
T COG1322 159 RSTLLEEIDRLLGEIQQLAQEAGNLTAALKGNKTRGNWGEV 199 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccHHHH
Confidence 88999999999999999999999999999997777 45544
No 349
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=81.05 E-value=27 Score=28.03 Aligned_cols=100 Identities=14% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHH
Q 023704 125 HAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREI 203 (278)
Q Consensus 125 k~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~ 203 (278)
+.|+..++..+.........+...+..=+.+|..-... ...+.....=|..-.....++...++.|++.+.+.......
T Consensus 6 kre~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~ 85 (126)
T PF13863_consen 6 KREMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKK 85 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHHHHHHHHHHHHHHHHh
Q 023704 204 MEKNIISVAQQIERLQAELAN 224 (278)
Q Consensus 204 meknl~~m~~e~eklrael~n 224 (278)
+...+..|-.++.+|...|..
T Consensus 86 l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 86 LKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 350
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=80.93 E-value=27 Score=27.95 Aligned_cols=69 Identities=20% Similarity=0.265 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 023704 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEK 191 (278)
Q Consensus 119 r~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ek 191 (278)
..+-.+..+|..++.+.-.+...-+++..++..+.++...... -+.+..+|+.++.+++..|....--|
T Consensus 10 ~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~----~~~~~~~l~~~~~~lk~~r~~~~v~k 78 (106)
T PF05837_consen 10 QESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE----DEELSEKLEKLEKELKKSRQRWRVMK 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc----chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666777777777777777766555333 35666777777777766665554443
No 351
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=80.88 E-value=42 Score=30.18 Aligned_cols=9 Identities=22% Similarity=0.187 Sum_probs=4.4
Q ss_pred CcccCceEE
Q 023704 1 MNIYGNSLH 9 (278)
Q Consensus 1 ~~ifG~tli 9 (278)
|.+|++++|
T Consensus 1 ~~~~~~~~v 9 (221)
T PF05700_consen 1 MSSINEVLV 9 (221)
T ss_pred CCCCccccc
Confidence 344555554
No 352
>PF12592 DUF3763: Protein of unknown function (DUF3763); InterPro: IPR022547 This domain is found in bacterial regulartory ATPases 3.6.3. from EC, and is approximately 60 amino acids in length. The domain is found C-terminal to PF07728 from PFAM. There is a single completely conserved residue F that may be functionally important. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; PDB: 3NBX_X.
Probab=80.76 E-value=9.6 Score=27.50 Aligned_cols=54 Identities=17% Similarity=0.279 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHH
Q 023704 167 AAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQA 220 (278)
Q Consensus 167 ~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklra 220 (278)
+++.++++.+.++|.+.|..|.---.-+.-.-+=.-.||..|..++..++.+|.
T Consensus 3 ~e~~~qL~~~~~~l~~qR~~F~~~qPhlFI~~~wl~~IE~Sl~~l~eqL~q~~~ 56 (57)
T PF12592_consen 3 EEALAQLDEAEHELRQQRSLFHQHQPHLFIDSEWLAAIEASLQQLAEQLEQLKQ 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT---TTS-HHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcCcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567889999999999999999988888888889999999999999999998874
No 353
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=80.75 E-value=62 Score=32.03 Aligned_cols=54 Identities=13% Similarity=0.216 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023704 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVK 97 (278)
Q Consensus 44 ~~~Le~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ 97 (278)
.+.+-.++..-++.+|..-...++++..+....|||+.++--++-+...+.-++
T Consensus 134 ~~~~~~~~~~~~q~lq~~~~~~er~~~~y~~~~qElq~k~t~~~afn~tikife 187 (464)
T KOG4637|consen 134 INAVGKKLREYHQQLQEKSLEYERLYEEYTRTSQELQMKRTAIEAFNETIKIFE 187 (464)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 556677777777788888888999999999999999988887777766665443
No 354
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=80.62 E-value=92 Score=33.92 Aligned_cols=45 Identities=11% Similarity=0.167 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhh----hhchhhHHHHHHHHHhHHH
Q 023704 166 MAAIKAEIETERQEIHKGRAAIECEK----KNRASNHEQREIMEKNIIS 210 (278)
Q Consensus 166 l~~LkaEIe~LrqEl~~~raa~e~ek----k~~~e~~eq~q~meknl~~ 210 (278)
+++++.+++.++|-..++-..++.-. -.+.++..|.-++-..|.-
T Consensus 293 Vk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlE 341 (1265)
T KOG0976|consen 293 VKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLE 341 (1265)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666555544444332 2344444444444444443
No 355
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=80.60 E-value=72 Score=32.70 Aligned_cols=79 Identities=16% Similarity=0.258 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhh---hhchhhHHHHHHHHHhHHHHH
Q 023704 137 KLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEK---KNRASNHEQREIMEKNIISVA 212 (278)
Q Consensus 137 ~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~raa~e~ek---k~~~e~~eq~q~meknl~~m~ 212 (278)
+|...+.+....+...-.+|..++.+ .+.++.++..|+.|.++|..+...|..=| +++++.-+ ++ --
T Consensus 384 rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kIdtE~--k~-------R~ 454 (531)
T PF15450_consen 384 RLSEAKNEWESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKIDTEG--KA-------RE 454 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhccHHH--HH-------HH
Confidence 34444667788888888999999999 89999999999999999999998887766 33333322 22 22
Q ss_pred HHHHHHHHHHHh
Q 023704 213 QQIERLQAELAN 224 (278)
Q Consensus 213 ~e~eklrael~n 224 (278)
++|.-+|.||+.
T Consensus 455 ~eV~~vRqELa~ 466 (531)
T PF15450_consen 455 REVGAVRQELAT 466 (531)
T ss_pred HHHHHHHHHHHH
Confidence 478888888854
No 356
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=80.44 E-value=11 Score=33.05 Aligned_cols=40 Identities=5% Similarity=0.224 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhh
Q 023704 144 EMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKG 183 (278)
Q Consensus 144 eL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~ 183 (278)
+|..+|..|+++++....--.+.+.|+.+..-|..||...
T Consensus 124 eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F 163 (171)
T PF04799_consen 124 ELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERF 163 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333444444444444444444433
No 357
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=80.38 E-value=33 Score=29.00 Aligned_cols=35 Identities=23% Similarity=0.152 Sum_probs=14.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023704 61 LLQDNQRLAATHVALKQELSLAEQELRHLSSVAAS 95 (278)
Q Consensus 61 ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~ 95 (278)
+-.+...........+.++......|..+......
T Consensus 24 l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~ 58 (135)
T TIGR03495 24 ARADLERANRVLKAQQAELASKANQLIVLLALAKR 58 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33333333333444444444444444444444433
No 358
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=80.37 E-value=86 Score=33.67 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 023704 166 MAAIKAEIETERQEIH 181 (278)
Q Consensus 166 l~~LkaEIe~LrqEl~ 181 (278)
+...+.+++.+-.++.
T Consensus 579 l~~a~~~~~~~i~~lk 594 (782)
T PRK00409 579 IKEAKKEADEIIKELR 594 (782)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 359
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=80.36 E-value=90 Score=33.63 Aligned_cols=13 Identities=15% Similarity=0.370 Sum_probs=9.5
Q ss_pred HHHHHHHHhHHHH
Q 023704 57 DIQSLLQDNQRLA 69 (278)
Q Consensus 57 eIq~ll~dnqrla 69 (278)
||+||+.+-+..+
T Consensus 357 E~qRLitEvE~ci 369 (861)
T PF15254_consen 357 EVQRLITEVEACI 369 (861)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888866543
No 360
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=80.26 E-value=45 Score=30.11 Aligned_cols=56 Identities=13% Similarity=0.144 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHH
Q 023704 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEI 173 (278)
Q Consensus 118 lr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEI 173 (278)
.++.+-+|.-|..++.-=..|....+++...|...++-..-+... ..||.-.-.+|
T Consensus 96 ~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei 152 (207)
T PF05010_consen 96 HKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEI 152 (207)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444443333333 33443333333
No 361
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=80.18 E-value=39 Score=34.09 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023704 166 MAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAE 226 (278)
Q Consensus 166 l~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael~n~~ 226 (278)
+..+.+-++.+.+++..++ .+....+.-+-.+.+++.+|+.+|....
T Consensus 126 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLL--------------TEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4445555555555554444 3334444445556667777777765553
No 362
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=80.13 E-value=28 Score=30.29 Aligned_cols=64 Identities=11% Similarity=0.111 Sum_probs=51.1
Q ss_pred HHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHH
Q 023704 157 AKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQA 220 (278)
Q Consensus 157 ~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklra 220 (278)
+.++...-....++.|.+.|+.++..+...++...+.+.++..+.++++.++=+|..=+++-|-
T Consensus 90 q~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARk 153 (161)
T TIGR02894 90 QNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARK 153 (161)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444556778888888888888888889888888999999999999999888887776553
No 363
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=79.96 E-value=21 Score=36.86 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 023704 70 ATHVALKQELSLAEQELRHLSSVAASVKA 98 (278)
Q Consensus 70 ~~~~~L~qEL~laqhEL~~l~~~i~~~~a 98 (278)
..+.....+|. .+.++.-.++++..+..
T Consensus 178 ~~w~~~~~~Lp-~~~~~~~yk~~v~~i~~ 205 (555)
T TIGR03545 178 QKWKKRKKDLP-NKQDLEEYKKRLEAIKK 205 (555)
T ss_pred HHHHHHHHhcC-CchhHHHHHHHHHHHHh
Confidence 33333333443 23444444444443333
No 364
>TIGR00681 kdpC K+-transporting ATPase, C subunit. This chain has a single predicted transmembrane region near the amino end. It is part of a K+-transport ATPase that contains two other membrane-bound subunits, KdpA and KdpB, and a small subunit KdpF. KdpA is the K+-translocating subunit, KdpB the ATP-hydrolyzing subunit. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilize the complex [PubMed:9858692]. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolyzing (energy providing) subunit [PubMed:9858692].
Probab=79.95 E-value=3 Score=37.12 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=26.6
Q ss_pred ccCceEE-------EeecCCCcccccCCccCCCCCCCCCCCCCCCCch
Q 023704 3 IYGNSLH-------TTLHNHSQFTMSGRRVLREPPLSTRALPPQHSPS 43 (278)
Q Consensus 3 ifG~tli-------vtfhp~~svTleGD~ydpeG~LsGGs~p~~~~~l 43 (278)
|.|+.|| -+|||.+|.| ++.-||+.+ ||||.-.++.|.
T Consensus 48 ~vGS~LIgQ~F~~~~yF~~RpSa~-~~~~y~~~~--SggSNl~psnp~ 92 (187)
T TIGR00681 48 VVGSALIGQTFTEEGYFHSRPSAI-NYSEYPTGA--SGGSNLAPSNPD 92 (187)
T ss_pred EEeeeeecCCCCCCCCcCCCCccc-CCCCCCccc--ccccCCCCCCHH
Confidence 5688888 8899998876 344588665 788854445554
No 365
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=79.89 E-value=23 Score=30.80 Aligned_cols=16 Identities=31% Similarity=0.517 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHh
Q 023704 167 AAIKAEIETERQEIHK 182 (278)
Q Consensus 167 ~~LkaEIe~LrqEl~~ 182 (278)
..+..||+.+++||.+
T Consensus 157 ~~~~~ei~~lk~el~~ 172 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEK 172 (192)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3344444444444444
No 366
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=79.57 E-value=31 Score=32.07 Aligned_cols=12 Identities=17% Similarity=0.523 Sum_probs=9.2
Q ss_pred CCccccCCC-CCC
Q 023704 241 STSYAASYG-NPD 252 (278)
Q Consensus 241 ~~~y~~~~g-n~~ 252 (278)
+|-||||+. -|+
T Consensus 275 aGiyGMNf~~mP~ 287 (318)
T TIGR00383 275 AGIYGMNFKFMPE 287 (318)
T ss_pred HHHHhCCcccCcc
Confidence 578999996 454
No 367
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=79.51 E-value=5.9 Score=32.08 Aligned_cols=38 Identities=24% Similarity=0.284 Sum_probs=22.3
Q ss_pred hhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 023704 185 AAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAEL 222 (278)
Q Consensus 185 aa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael 222 (278)
.++++-++--..+-+++..+++++.....++..+.+.+
T Consensus 86 eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l 123 (126)
T TIGR00293 86 EAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEA 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555666666666666666666666554
No 368
>PRK11519 tyrosine kinase; Provisional
Probab=79.49 E-value=37 Score=35.76 Aligned_cols=52 Identities=10% Similarity=0.061 Sum_probs=29.5
Q ss_pred hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhH
Q 023704 163 SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANA 225 (278)
Q Consensus 163 ~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael~n~ 225 (278)
.-++..|+..+..|++++..++. .+..+...|+.+..+.|+++-.+.-....
T Consensus 338 hP~v~~l~~~~~~L~~~~~~l~~-----------~~~~lp~~e~~~~~L~Re~~~~~~lY~~l 389 (719)
T PRK11519 338 HPAYRTLLEKRKALEDEKAKLNG-----------RVTAMPKTQQEIVRLTRDVESGQQVYMQL 389 (719)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH-----------HHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555444443 23345556777778888877766655443
No 369
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=79.25 E-value=58 Score=30.77 Aligned_cols=90 Identities=10% Similarity=0.172 Sum_probs=42.0
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhhhhhhh-----chhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHhhHHHHH------
Q 023704 165 DMAAIKAEIETERQEIHKGRAAIECEKKN-----RASNHEQREIMEKNIISVAQQIERLQAELANAEKRARAAA------ 233 (278)
Q Consensus 165 kl~~LkaEIe~LrqEl~~~raa~e~ekk~-----~~e~~eq~q~meknl~~m~~e~eklrael~n~~~r~~a~~------ 233 (278)
++-.|+..+=.+|.-+...+..+-.-.+. ..+.-++.+-.--.+.++...++-++..+.+.-.-.-+-.
T Consensus 181 ~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~~~~~~~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~is~~~N~ 260 (322)
T COG0598 181 RLGELRRSLVYLRRALAPLRDVLLRLARRPLDWLSEEDREYLRDVLDHLTQLIEMLEALRERLSSLLDAYLSLINNNQNE 260 (322)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333333 2334444444444555555555555555543321111111
Q ss_pred -------HhhhcCC----CCccccCCCC-CCCC
Q 023704 234 -------AAAAVNP----STSYAASYGN-PDPG 254 (278)
Q Consensus 234 -------~a~~~~~----~~~y~~~~gn-~~~~ 254 (278)
.+.+.-| .|-||||++. |+..
T Consensus 261 imk~LTi~s~iflPpTlIagiyGMNf~~mPel~ 293 (322)
T COG0598 261 IMKILTIVSTIFLPPTLITGFYGMNFKGMPELD 293 (322)
T ss_pred HHHHHHHHHHHHHhhHHHHcccccCCCCCcCCC
Confidence 1333333 5799999985 6543
No 370
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=79.01 E-value=46 Score=30.33 Aligned_cols=103 Identities=23% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHH---HHHHHHHHhhhhhhhhhhhhchhhHH
Q 023704 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEI---ETERQEIHKGRAAIECEKKNRASNHE 199 (278)
Q Consensus 124 lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEI---e~LrqEl~~~raa~e~ekk~~~e~~e 199 (278)
+..=...+..+...+......|...+..+-+++.+|..+ ..+-+.++.+. ....+.++...+.++-.|+.+-..-.
T Consensus 58 ~~~~w~~i~~~~e~~a~~H~~l~~~L~~~~~~l~~~~~~~~k~rK~~k~~~~~~~k~~~~~~~~~~~l~KaK~~Y~~~c~ 137 (261)
T cd07648 58 FAPLWLVLRVSTEKLSELHLQLVQKLQELIKDVQKYGEEQHKKHKKVKEEESGTAEAVQAIQTTTAALQKAKEAYHARCL 137 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHh
Q 023704 200 QREIMEKNIISVAQQIERLQAELANAEK 227 (278)
Q Consensus 200 q~q~meknl~~m~~e~eklrael~n~~~ 227 (278)
.....+++..+ ..+++|++.-+..|+.
T Consensus 138 e~e~~~~~~~s-~k~~eK~~~K~~ka~~ 164 (261)
T cd07648 138 ELERLRRENAS-PKEIEKAEAKLKKAQD 164 (261)
T ss_pred HHHHHHHccCC-HHHHHHHHHHHHHHHH
No 371
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=78.86 E-value=27 Score=26.81 Aligned_cols=39 Identities=23% Similarity=0.385 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 120 VIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAK 158 (278)
Q Consensus 120 ~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~ 158 (278)
..+.++.++..+..++.++......+..++..++..|..
T Consensus 63 ~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 63 AIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777777777777777766654
No 372
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=78.76 E-value=34 Score=27.85 Aligned_cols=28 Identities=14% Similarity=0.134 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 125 HAELDRVRADIEKLCVIKQEMIKDLNEI 152 (278)
Q Consensus 125 k~El~qlr~ei~~l~~~rqeL~~evq~L 152 (278)
+.-+.+++++.........+|.++|..+
T Consensus 43 ~~~l~~L~~q~~s~~qr~~eLqaki~ea 70 (107)
T PF09304_consen 43 RNALQSLQAQNASRNQRIAELQAKIDEA 70 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 373
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=78.74 E-value=76 Score=32.60 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023704 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE 162 (278)
Q Consensus 122 e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d 162 (278)
-+++.--.++.+|..++...-.|+.+....-+.||+.+++-
T Consensus 264 q~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs~ 304 (596)
T KOG4360|consen 264 QAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRSC 304 (596)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 34444455677777777777777777777778888877754
No 374
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=78.70 E-value=96 Score=33.00 Aligned_cols=106 Identities=16% Similarity=0.187 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------------hccHHHHHHHHHHHHHHHHh
Q 023704 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE------------------SKDMAAIKAEIETERQEIHK 182 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d------------------~~kl~~LkaEIe~LrqEl~~ 182 (278)
+..++.+...+...+..+.+...-+...|..++..+....+. ..+..++..+++.|+.++.+
T Consensus 498 ~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek 577 (698)
T KOG0978|consen 498 HKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEK 577 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555444444444444444443333 22234445555566666666
Q ss_pred hhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023704 183 GRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAE 226 (278)
Q Consensus 183 ~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael~n~~ 226 (278)
..+..+.-.--..+.-..+..|-+|.-..=-|+++|+-.+.-..
T Consensus 578 ~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k 621 (698)
T KOG0978|consen 578 SEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLK 621 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66666665666666666666666666666667777777664443
No 375
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=78.65 E-value=47 Score=29.39 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 023704 75 LKQELSLAEQELRHLSSVAA 94 (278)
Q Consensus 75 L~qEL~laqhEL~~l~~~i~ 94 (278)
+.+++...+.+|..+..++.
T Consensus 69 ~E~E~~~~~~el~~~E~rl~ 88 (201)
T PF12072_consen 69 LERELKERRKELQRLEKRLQ 88 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 376
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=78.62 E-value=26 Score=26.38 Aligned_cols=60 Identities=13% Similarity=0.412 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhh-hccHHHHHHHHHHHHHH
Q 023704 120 VIESMHAELDRVRADIEKLCVIKQEMIKDLN---EINGDLAKARDE-SKDMAAIKAEIETERQE 179 (278)
Q Consensus 120 ~~e~lk~El~qlr~ei~~l~~~rqeL~~evq---~LekDL~~~~~d-~~kl~~LkaEIe~LrqE 179 (278)
.++.++..|..++..+.++............ .++++|.....+ .+....++..|+.|+..
T Consensus 8 ~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~ 71 (103)
T PF00804_consen 8 EVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKD 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433332222221 233333333333 33344444444444444
No 377
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=78.43 E-value=30 Score=33.48 Aligned_cols=58 Identities=14% Similarity=0.338 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhh
Q 023704 125 HAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAA 186 (278)
Q Consensus 125 k~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~raa 186 (278)
.+|...++.|.++++........+++.+. +.+.+ .+.|..-+..+..+++.++++...
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~----~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~ 61 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELS----KLQDKCSSSISHQKKRLKELKKSLKRCKKS 61 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 45666666666666666666655555444 33434 555555566667777777776544
No 378
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=78.35 E-value=74 Score=31.53 Aligned_cols=147 Identities=24% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-h
Q 023704 85 ELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-S 163 (278)
Q Consensus 85 EL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~ 163 (278)
||..+.+.....+.-..-.+-+| ...++..|.++..|-.+|....-+++..++.-...=.+...+ .
T Consensus 264 el~siRr~Cd~lP~~m~tKveel-------------ar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAq 330 (442)
T PF06637_consen 264 ELESIRRTCDHLPKIMTTKVEEL-------------ARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQ 330 (442)
T ss_pred hHHHHHHHHhhchHHHHHHHHHH-------------HHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHhhHHHHH----------
Q 023704 164 KDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKRARAAA---------- 233 (278)
Q Consensus 164 ~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael~n~~~r~~a~~---------- 233 (278)
++...|++|-..-.+-.-.-.++..-||+.-...+|..+ ||+|.|+.++ +-+-.+..
T Consensus 331 areaklqaec~rQ~qlaLEEKaaLrkerd~L~keLeekk----------releql~~q~---~v~~saLdtCikaKsq~~ 397 (442)
T PF06637_consen 331 AREAKLQAECARQTQLALEEKAALRKERDSLAKELEEKK----------RELEQLKMQL---AVKTSALDTCIKAKSQPM 397 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHH---HhhhhHHHHHHHhccCCC
Q ss_pred ------HhhhcCCCC---------------ccccCCCCCCCCCCC
Q 023704 234 ------AAAAVNPST---------------SYAASYGNPDPGFGG 257 (278)
Q Consensus 234 ------~a~~~~~~~---------------~y~~~~gn~~~~~~~ 257 (278)
..++.||.+ +|-++.|||-++-+|
T Consensus 398 ~p~~r~~~p~pnp~pidp~~leefkrrilesqr~~~~~~~~~~sg 442 (442)
T PF06637_consen 398 TPGPRPVGPVPNPPPIDPASLEEFKRRILESQRPPVGNPAAPSSG 442 (442)
T ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHhccCCCCCCCCCCCCC
No 379
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=78.15 E-value=18 Score=29.30 Aligned_cols=52 Identities=13% Similarity=0.342 Sum_probs=29.5
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 105 RELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKA 159 (278)
Q Consensus 105 r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~ 159 (278)
++|+++...||.. +..+-+++.+++..+..+..+-..|.-+-+.|..-|.+.
T Consensus 4 ~~l~~~l~~le~~---l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 4 KELFDRLDQLEQQ---LGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666 444555555555555555555555555555555554443
No 380
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=78.03 E-value=52 Score=29.56 Aligned_cols=23 Identities=4% Similarity=0.050 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHH
Q 023704 196 SNHEQREIMEKNIISVAQQIERL 218 (278)
Q Consensus 196 e~~eq~q~meknl~~m~~e~ekl 218 (278)
..+..+|.||...|.+.+++=..
T Consensus 205 ~~~~~~q~le~~ri~~~k~~l~~ 227 (251)
T cd07653 205 QIFDKLQELDEKRINRTVELLLQ 227 (251)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 44566788888888877766554
No 381
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=77.91 E-value=71 Score=31.10 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=14.7
Q ss_pred HHhHHHHHHHHHHHHHHHHhHHh
Q 023704 205 EKNIISVAQQIERLQAELANAEK 227 (278)
Q Consensus 205 eknl~~m~~e~eklrael~n~~~ 227 (278)
+..+-....++..++++++.++.
T Consensus 226 ~~~~~~~~~~l~~~~~~l~~~~~ 248 (421)
T TIGR03794 226 EKELETVEARIKEARYEIEELEN 248 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555677777777777763
No 382
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=77.88 E-value=67 Score=30.77 Aligned_cols=31 Identities=13% Similarity=0.257 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 023704 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVA 74 (278)
Q Consensus 44 ~~~Le~~L~~q~~eIq~ll~dnqrla~~~~~ 74 (278)
+..|.+++...+.|-..+-.+...|...+..
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~ 192 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDT 192 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhh
Confidence 6666666666665555555555555555443
No 383
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=77.85 E-value=18 Score=29.53 Aligned_cols=52 Identities=12% Similarity=0.271 Sum_probs=31.3
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 105 RELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKA 159 (278)
Q Consensus 105 r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~ 159 (278)
++|+++...||.. +..+-+++..++..+.++..+-..|.-+-+.|.+-|.+.
T Consensus 4 ~elfd~l~~le~~---l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 4 KEIFDALDDLEQN---LGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred hHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677777777666 555556666666666666666555555555555555543
No 384
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=77.83 E-value=27 Score=26.25 Aligned_cols=43 Identities=9% Similarity=0.177 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023704 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (278)
Q Consensus 118 lr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~ 160 (278)
+..+..++.|+..++.+...|.....+|..+.+++..|-..|+
T Consensus 17 veti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~ 59 (72)
T PF06005_consen 17 VETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQ 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666666666666666666666665544443
No 385
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.82 E-value=93 Score=32.38 Aligned_cols=128 Identities=13% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHH
Q 023704 45 HHLEDRIAIQHS-------DIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAE 117 (278)
Q Consensus 45 ~~Le~~L~~q~~-------eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleae 117 (278)
+.|..++..|++ ++..+-....+|++.+......-+...+.++.|.....+..--.
T Consensus 591 ~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l----------------- 653 (741)
T KOG4460|consen 591 KLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVL----------------- 653 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcc-----------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc----------------HHHHHHHHHHHHHHHH
Q 023704 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKD----------------MAAIKAEIETERQEIH 181 (278)
Q Consensus 118 lr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~k----------------l~~LkaEIe~LrqEl~ 181 (278)
-++--..++|++-+-.+++.|.+....+.+.+.+-..-|....++.+| |+.|-.+|+.+-+..+
T Consensus 654 ~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~Y~l~~~Q~~~iqsiL~~L~~~i~~~~k~VK 733 (741)
T KOG4460|consen 654 SDAERDFKKELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPTYILSAYQRKCIQSILKELGEHIREMVKQVK 733 (741)
T ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhh
Q 023704 182 KGRAAIEC 189 (278)
Q Consensus 182 ~~raa~e~ 189 (278)
+.+..+..
T Consensus 734 ~i~~~v~~ 741 (741)
T KOG4460|consen 734 DIRNHVNF 741 (741)
T ss_pred HHHHhhcC
No 386
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=77.71 E-value=53 Score=29.54 Aligned_cols=67 Identities=10% Similarity=0.221 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhh
Q 023704 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECE 190 (278)
Q Consensus 124 lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~e 190 (278)
+-.-+.+++.+++.....+..+..+.+++++=-.+..+|.+.|.+.+.++...+.+..+....++.|
T Consensus 95 Y~~l~k~~k~~~K~~~~ar~~~~~~~~~leklk~~~~~d~~~i~eaE~~l~~a~~d~~r~s~~l~ee 161 (211)
T cd07598 95 YGTICKHARDDLKNTFTARNKELKQLKQLEKLRQKNPSDRQIISQAESELQKASVDANRSTKELEEQ 161 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566677776666677777776666665533333355566667777777777666666666554
No 387
>PF13166 AAA_13: AAA domain
Probab=77.60 E-value=93 Score=32.26 Aligned_cols=22 Identities=27% Similarity=0.521 Sum_probs=10.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHhH
Q 023704 204 MEKNIISVAQQIERLQAELANA 225 (278)
Q Consensus 204 meknl~~m~~e~eklrael~n~ 225 (278)
.+..+-....++..|++++.|.
T Consensus 436 ~~~~~~~~~~~i~~l~~~~~~~ 457 (712)
T PF13166_consen 436 AKEEIKKIEKEIKELEAQLKNT 457 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3334444444555555555443
No 388
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=77.26 E-value=7.1 Score=37.41 Aligned_cols=71 Identities=21% Similarity=0.339 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hccHHHHHHHHHHHHHHHHhhhhhhhh
Q 023704 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE----SKDMAAIKAEIETERQEIHKGRAAIEC 189 (278)
Q Consensus 119 r~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d----~~kl~~LkaEIe~LrqEl~~~raa~e~ 189 (278)
+.+++++..+.++..++.......++...+++.++..|..+..+ ..+...|+.+++.....|.++..-+.-
T Consensus 214 ~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~ 288 (344)
T PF12777_consen 214 KEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISG 288 (344)
T ss_dssp CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhh
Confidence 44566666666666666665555555555555555555554443 234556666777777777666655543
No 389
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=77.26 E-value=28 Score=26.80 Aligned_cols=41 Identities=10% Similarity=0.242 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023704 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARD 161 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~ 161 (278)
++++|.+=.++..+++.+.+.+.+|..+.+.+..|-.-|+.
T Consensus 27 ieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wqe 67 (79)
T PRK15422 27 IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQE 67 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 55666666667777777777777777777777777766663
No 390
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=77.21 E-value=90 Score=31.87 Aligned_cols=56 Identities=5% Similarity=0.217 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHH
Q 023704 145 MIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQ 200 (278)
Q Consensus 145 L~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq 200 (278)
|..+-+.|.+....+.....+|...+.+|+...+++......++.........+|.
T Consensus 85 L~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~ 140 (514)
T TIGR03319 85 LLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELER 140 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444443444444444445444444444444444333333333333
No 391
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=77.20 E-value=29 Score=26.78 Aligned_cols=64 Identities=14% Similarity=0.145 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHhhHHHH
Q 023704 169 IKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKRARAA 232 (278)
Q Consensus 169 LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael~n~~~r~~a~ 232 (278)
|.+.|...=..|.=+...||..|-.|..+.+..+..--+=-.+.+|-++|+.|..+-..|-|+.
T Consensus 9 LE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444445555555555555555555555567778888888887777776654
No 392
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=77.20 E-value=1.1e+02 Score=32.69 Aligned_cols=66 Identities=18% Similarity=0.254 Sum_probs=33.0
Q ss_pred hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHhh
Q 023704 163 SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKR 228 (278)
Q Consensus 163 ~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael~n~~~r 228 (278)
.++++.|+..+..||..+......|+.-..-|--+--++-+=-+-+...---|.+|.-|+.|+.+.
T Consensus 586 ~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~ 651 (786)
T PF05483_consen 586 EKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKK 651 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 445556666666666665555555544222222222222222222333334677888888887653
No 393
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=76.95 E-value=1e+02 Score=32.52 Aligned_cols=105 Identities=16% Similarity=0.253 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 68 LAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAE-LRVIESMHAELDRVRADIEKLCVIKQEMI 146 (278)
Q Consensus 68 la~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleae-lr~~e~lk~El~qlr~ei~~l~~~rqeL~ 146 (278)
....-..|.++|+.++-+|.-+-..+....--.+ .+.|.|.. ..-.+.+...+.+++..-.+-.....++.
T Consensus 59 a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~--------~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~ 130 (660)
T KOG4302|consen 59 ASESKARLLQEIAVIEAELNDLCSALGEPSIIGE--------ISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELY 130 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc--------cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556777888888887777666553322211 00111111 12233344444444444444444445555
Q ss_pred HHHHHHHHHHHHH-------h---hh--hccHHHHHHHHHHHHHHH
Q 023704 147 KDLNEINGDLAKA-------R---DE--SKDMAAIKAEIETERQEI 180 (278)
Q Consensus 147 ~evq~LekDL~~~-------~---~d--~~kl~~LkaEIe~LrqEl 180 (278)
.+++.|..+|..- . .| ..+|.+++..|..|++|.
T Consensus 131 ~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek 176 (660)
T KOG4302|consen 131 HQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEK 176 (660)
T ss_pred HHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHH
Confidence 5555555555433 1 22 245566666665555543
No 394
>PRK13999 potassium-transporting ATPase subunit C; Provisional
Probab=76.91 E-value=4.2 Score=36.54 Aligned_cols=39 Identities=15% Similarity=0.082 Sum_probs=26.1
Q ss_pred ccCceEE-------EeecCCCccccc----------CCccCCCCCCCCCCCCCCCCch
Q 023704 3 IYGNSLH-------TTLHNHSQFTMS----------GRRVLREPPLSTRALPPQHSPS 43 (278)
Q Consensus 3 ifG~tli-------vtfhp~~svTle----------GD~ydpeG~LsGGs~p~~~~~l 43 (278)
|-|+.|| -+|||.+|.|-. .+-||+.+ ||||.-.++.|.
T Consensus 50 vvGS~LIgQ~F~~~~YF~~RPSa~~~~~~~~~~~~~~~~y~~~~--SGgSNlgpsnp~ 105 (201)
T PRK13999 50 VIGSALIGQSFTGDRYFHGRPSATTAADPADASKTVPAPYNAAN--SMGSNLGPTSKA 105 (201)
T ss_pred EEeeeeecCCCCCCCCccCCCcccccccccccccccCCCCCccc--ccccCCCCCCHH
Confidence 5688888 889999888632 12477665 788844445554
No 395
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=76.89 E-value=8.9 Score=38.71 Aligned_cols=40 Identities=15% Similarity=0.091 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhhh-h---ccHHHHHHHHHHHHHHHHhhhhh
Q 023704 147 KDLNEINGDLAKARDE-S---KDMAAIKAEIETERQEIHKGRAA 186 (278)
Q Consensus 147 ~evq~LekDL~~~~~d-~---~kl~~LkaEIe~LrqEl~~~raa 186 (278)
.++..|++.|..++.+ . .+...++.+|+.|..|+..++..
T Consensus 76 ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433 2 33444444444444444444333
No 396
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=76.88 E-value=62 Score=30.89 Aligned_cols=59 Identities=19% Similarity=0.233 Sum_probs=36.8
Q ss_pred chhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHhhHHHHH-------------HhhhcCC----CCccccCCC-CCC
Q 023704 194 RASNHEQREIMEKNIISVAQQIERLQAELANAEKRARAAA-------------AAAAVNP----STSYAASYG-NPD 252 (278)
Q Consensus 194 ~~e~~eq~q~meknl~~m~~e~eklrael~n~~~r~~a~~-------------~a~~~~~----~~~y~~~~g-n~~ 252 (278)
..+..++.+.+-+++-+....++-++.-+.+.-.---+.. .+.+.-| .+-||+|+. -|+
T Consensus 209 ~~~~~~~~~~~~~Di~~l~~~~~~~~~~~~~l~d~~~~~i~~~~N~~mk~lTv~s~if~pptliagiyGMNf~~mP~ 285 (316)
T PRK11085 209 PGGQLEQAREILRDIESLLPHNESLFQKVNFLMQAAMGFINIEQNRIIKIFSVVSVVFLPPTLVASSYGMNFEFMPE 285 (316)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCC
Confidence 3445567788888888888888888877765532111111 1333333 478999996 453
No 397
>PRK14002 potassium-transporting ATPase subunit C; Provisional
Probab=76.78 E-value=4 Score=36.26 Aligned_cols=35 Identities=9% Similarity=-0.015 Sum_probs=25.4
Q ss_pred ccCceEE-------EeecCCCcccccCCccCCCCCCCCCCCCCCCCch
Q 023704 3 IYGNSLH-------TTLHNHSQFTMSGRRVLREPPLSTRALPPQHSPS 43 (278)
Q Consensus 3 ifG~tli-------vtfhp~~svTleGD~ydpeG~LsGGs~p~~~~~l 43 (278)
|-|+.|| =+|||.+|.| -||+.+ ||||.-.+++|.
T Consensus 48 vvGS~LIgQ~Ft~~~yF~~RpSa~----~y~~~~--SggSNl~psnp~ 89 (186)
T PRK14002 48 VVGYANIGQSFTQDIYFWGRPSAV----GYNAAG--SGGSNKGPSNPE 89 (186)
T ss_pred EeeeeeecCCCCCCCCccCCCCCC----CCCccc--ccccCCCCCCHH
Confidence 5688899 8899998887 388665 788844445554
No 398
>PHA02607 wac fibritin; Provisional
Probab=76.67 E-value=66 Score=32.44 Aligned_cols=107 Identities=15% Similarity=0.204 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhh-----------
Q 023704 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRA----------- 185 (278)
Q Consensus 118 lr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~ra----------- 185 (278)
+..+...+.+|..|+..+.+.......+...+..++.|+-.|... ...-.-.+.+|-=+|+||-.-..
T Consensus 91 i~qv~~n~~dI~~lk~~~~~~~~~l~~~~~~~~~~~~~iG~~~p~~d~~~rTVr~di~~IK~elG~y~g~diNG~p~p~s 170 (454)
T PHA02607 91 IDQINQNVADIEVLKKDVSDTTDKLAGTTNEVDEIEADIGVFNPEADPVTRTIRNDILWIKTELGAYPGFDINGNPDPGS 170 (454)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhcCCcCcccCCCccchhhhHHHHHHHhccCCCCCCCCCcCCCC
Confidence 555666666677777777777777777777888888888877766 56667788888888888754321
Q ss_pred -------hhhhhhhhchhhHHHHHHHHHhHH-----HHHHHHHHHHHHHHh
Q 023704 186 -------AIECEKKNRASNHEQREIMEKNII-----SVAQQIERLQAELAN 224 (278)
Q Consensus 186 -------a~e~ekk~~~e~~eq~q~meknl~-----~m~~e~eklrael~n 224 (278)
.|.--..+=..+-.....+|.++. ++.+||.+||+||=.
T Consensus 171 ~gtGmK~ri~~n~~~~~~~~~Ri~~LE~~~~~sdVg~Lt~~v~~lR~ElG~ 221 (454)
T PHA02607 171 TGTGMKYRIIDNTTALVDHGQRITELENDWADSDVGQLTREVNDLRAELGP 221 (454)
T ss_pred CCCceeeehhhhHHHHHhhhhHHHHHHhhhhhcCchHHHHHHHHHHHHhCC
Confidence 111122222344455666777775 688999999999943
No 399
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=76.64 E-value=1.8 Score=41.57 Aligned_cols=34 Identities=9% Similarity=0.253 Sum_probs=18.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhHHhhHHHH
Q 023704 199 EQREIMEKNIISVAQQIERLQAELANAEKRARAA 232 (278)
Q Consensus 199 eq~q~meknl~~m~~e~eklrael~n~~~r~~a~ 232 (278)
-.+++|+-++-.|.+-|--+-.-|.+-++|-.+.
T Consensus 119 s~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~L 152 (326)
T PF04582_consen 119 SSVSALSTDVSNLKSDVSTQALNITDLESRVKAL 152 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHH
Confidence 3444555555555555555555555666776544
No 400
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=76.52 E-value=13 Score=25.40 Aligned_cols=36 Identities=17% Similarity=0.389 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDL 156 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL 156 (278)
.+.++..-..+.++-..|....+.|.++|..++.-+
T Consensus 7 y~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 7 YDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 677777777777777777777777777777776544
No 401
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=76.52 E-value=64 Score=30.87 Aligned_cols=97 Identities=19% Similarity=0.280 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHH
Q 023704 122 ESMHAELDRVRADIEKLCVI-KQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHE 199 (278)
Q Consensus 122 e~lk~El~qlr~ei~~l~~~-rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~e 199 (278)
+.--++|+.|-..+..-... ..|+-+-|..|.+-.++++.= ..+.-+|.+|++.+++|-...-. .+...-|
T Consensus 156 EKSvKDLqRctvSL~RYr~~lkee~d~S~k~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAmeiL~-------aRqkkAe 228 (302)
T PF07139_consen 156 EKSVKDLQRCTVSLTRYRVVLKEEMDSSIKKIKQTFAELQSCLMDREVALLAEMDKVKAEAMEILD-------ARQKKAE 228 (302)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 33345777777766655443 445666677777777777766 77889999999999998765432 2444556
Q ss_pred HHHHHHHhHHHHHH-HHHHHHHHHHhH
Q 023704 200 QREIMEKNIISVAQ-QIERLQAELANA 225 (278)
Q Consensus 200 q~q~meknl~~m~~-e~eklrael~n~ 225 (278)
-++.|..--+.|+- ++--|||||--+
T Consensus 229 eLkrltd~A~~MsE~Ql~ELRadIK~f 255 (302)
T PF07139_consen 229 ELKRLTDRASQMSEEQLAELRADIKHF 255 (302)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 67777777788876 899999999655
No 402
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=76.50 E-value=38 Score=32.82 Aligned_cols=53 Identities=13% Similarity=0.265 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H----hhhhccHHHHHHHHHHHHH
Q 023704 126 AELDRVRADIEKLCVIKQEMIKDLNEINGDLAK-A----RDESKDMAAIKAEIETERQ 178 (278)
Q Consensus 126 ~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~-~----~~d~~kl~~LkaEIe~Lrq 178 (278)
.+-+.|+.++.++.....++......++.||.. | +....||..|+..|..++.
T Consensus 151 ~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~ 208 (342)
T PF06632_consen 151 KENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAKE 208 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhc
Confidence 333334444444444444444444445555433 1 2223444444444444443
No 403
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=76.49 E-value=54 Score=28.92 Aligned_cols=37 Identities=30% Similarity=0.365 Sum_probs=18.2
Q ss_pred hhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023704 183 GRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAE 226 (278)
Q Consensus 183 ~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael~n~~ 226 (278)
+|...|..+++|.-+.+-++- +..++++||.||..-+
T Consensus 86 LReQLEq~~~~N~~L~~dl~k-------lt~~~~~l~~eL~~ke 122 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQK-------LTQDWERLRDELEQKE 122 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 444555555555444433333 4555555666665444
No 404
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=76.32 E-value=55 Score=32.06 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=12.2
Q ss_pred HHHHHH-HHHHHHHHHHhHH
Q 023704 208 IISVAQ-QIERLQAELANAE 226 (278)
Q Consensus 208 l~~m~~-e~eklrael~n~~ 226 (278)
|..||. |+..|+.++.+.+
T Consensus 93 l~~~a~~e~~~l~~~l~~le 112 (367)
T PRK00578 93 TLAEAEAELKALEKKLAALE 112 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 555553 7777777776665
No 405
>PRK06008 flgL flagellar hook-associated protein FlgL; Validated
Probab=76.32 E-value=73 Score=30.41 Aligned_cols=114 Identities=13% Similarity=0.141 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHhH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 72 HVALKQELSLAEQELRHLSSVAASVKAER-DAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLN 150 (278)
Q Consensus 72 ~~~L~qEL~laqhEL~~l~~~i~~~~ae~-e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq 150 (278)
+..+.+.|...+.+|..++.++.+-+.-. =...-.-.-+++.|+.++..++.+..-+..++.-+.........+..-++
T Consensus 12 ~~~~~~~l~~~~~~l~~lq~qlsTGk~~d~~s~~~~~~~~~~~l~~~~~~~~qy~~n~~~a~~~l~~~~~aL~~v~~~~~ 91 (348)
T PRK06008 12 QNALRLTIAKLQAELSKAQTEATTGRYADVGLSLGSKTARSVSLRREYDRLASLTDSNSLVTQRLTATQTALGQIIEAAQ 91 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666666666665333221 00000124456778888999999999999999999998888888888888
Q ss_pred HHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhh
Q 023704 151 EINGDLAKARDESKDMAAIKAEIETERQEIHKGRA 185 (278)
Q Consensus 151 ~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~ra 185 (278)
++...+-...........+..|++.+..++...-.
T Consensus 92 ~~~~~l~~~~~~~~~~~aia~e~~~~~~~l~~~~N 126 (348)
T PRK06008 92 SFLNDLLAANSSAQTAATVAQSARSALSSLTSTLN 126 (348)
T ss_pred HHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 88877765333366778888888888888765543
No 406
>PRK00106 hypothetical protein; Provisional
Probab=76.29 E-value=99 Score=31.88 Aligned_cols=61 Identities=7% Similarity=0.183 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHH
Q 023704 144 EMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIM 204 (278)
Q Consensus 144 eL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~m 204 (278)
.|..+-+.|.+....+.....+|...+.+|+..++++.+....++.-.......+++.-.|
T Consensus 105 rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a~l 165 (535)
T PRK00106 105 RLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAAL 165 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3444444444444444444555555566666666666666665555444444444444333
No 407
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=75.94 E-value=45 Score=27.82 Aligned_cols=38 Identities=13% Similarity=0.299 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAK 158 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~ 158 (278)
.+.++.|+..++.++.......+.+..-|..|+..|.+
T Consensus 84 ~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ 121 (126)
T PF07889_consen 84 SKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDE 121 (126)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444443
No 408
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=75.70 E-value=1.2e+02 Score=32.52 Aligned_cols=131 Identities=14% Similarity=0.229 Sum_probs=82.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 58 IQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEK 137 (278)
Q Consensus 58 Iq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~ 137 (278)
++..+..--|+..+...+++|....+..+..++..+...+.+...-| .. |..++.+|..++.++.-+++
T Consensus 58 ~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~~~e~~t~~s~-~~----------L~~ld~vK~rm~~a~~~L~E 126 (766)
T PF10191_consen 58 SQQALQRVPRVLREVDRLRQEAASLQEQMASVQEEIKAVEQDTAQSM-AQ----------LAELDSVKSRMEAARETLQE 126 (766)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHH-HH----------HHHHHHHHHHHHHHHHHHHH
Confidence 33444444567777777777777777777777777776666553222 23 55567777777777766665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHH
Q 023704 138 LCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQ 213 (278)
Q Consensus 138 l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~ 213 (278)
... ...++.++..+-. .+.++.+-..|.+|++.+.-+...-||+- ...++..++.-|=+|++
T Consensus 127 A~~--------w~~l~~~v~~~~~-~~d~~~~a~~l~~m~~sL~~l~~~pd~~~-----r~~~le~l~nrLEa~vs 188 (766)
T PF10191_consen 127 ADN--------WSTLSAEVDDLFE-SGDIAKIADRLAEMQRSLAVLQDVPDYEE-----RRQQLEALKNRLEALVS 188 (766)
T ss_pred HHh--------HHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHcCCCchhH-----HHHHHHHHHHHHHHHhh
Confidence 332 3445555554332 35677888888899998888877767654 33455555555655555
No 409
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=75.44 E-value=42 Score=28.19 Aligned_cols=75 Identities=8% Similarity=0.265 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 66 QRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEM 145 (278)
Q Consensus 66 qrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL 145 (278)
+.+......|-.+|..+-+++..|-..+..+....|.|...| ..|..|+..+..+.++...+..+|
T Consensus 65 ~~~~~~~~elA~dIi~kakqIe~LIdsLPg~~~see~Q~~~i--------------~~L~~E~~~~~~el~~~v~e~e~l 130 (144)
T PF11221_consen 65 EEFEENIKELATDIIRKAKQIEYLIDSLPGIEVSEEEQLKRI--------------KELEEENEEAEEELQEAVKEAEEL 130 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSSS-HHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555667888888999999888887665554444333 333444444444444444444444
Q ss_pred HHHHHHHHH
Q 023704 146 IKDLNEING 154 (278)
Q Consensus 146 ~~evq~Lek 154 (278)
-.+|+.+=.
T Consensus 131 l~~v~~~i~ 139 (144)
T PF11221_consen 131 LKQVQELIR 139 (144)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
No 410
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=75.36 E-value=52 Score=28.34 Aligned_cols=19 Identities=16% Similarity=0.277 Sum_probs=12.1
Q ss_pred HHHHhhhhhhhhhhhhchh
Q 023704 178 QEIHKGRAAIECEKKNRAS 196 (278)
Q Consensus 178 qEl~~~raa~e~ekk~~~e 196 (278)
+.+..++..|+.|+..-..
T Consensus 114 ~~~~~A~~~I~~ek~~a~~ 132 (173)
T PRK13453 114 GMIETAQSEINSQKERAIA 132 (173)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455677778877765544
No 411
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=75.30 E-value=70 Score=30.46 Aligned_cols=37 Identities=5% Similarity=0.118 Sum_probs=18.4
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHH
Q 023704 164 KDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQ 200 (278)
Q Consensus 164 ~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq 200 (278)
+.++.+...++.|...+..+...+..-.+......+.
T Consensus 53 ~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~~~~ 89 (338)
T PF04124_consen 53 QELSSLSDSLDSLLDSLPELDEACQRFSSKAQKISEE 89 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555554444444444444
No 412
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=75.09 E-value=43 Score=27.10 Aligned_cols=36 Identities=33% Similarity=0.391 Sum_probs=18.9
Q ss_pred hhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 023704 187 IECEKKNRASNHEQREIMEKNIISVAQQIERLQAEL 222 (278)
Q Consensus 187 ~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael 222 (278)
+++-++.-..+-+++..+++++..+..++..+...+
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l 124 (129)
T cd00584 89 IEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555555555555555555544
No 413
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=74.84 E-value=1e+02 Score=31.44 Aligned_cols=21 Identities=10% Similarity=0.139 Sum_probs=11.3
Q ss_pred hccHHHHHHHHHHHHHHHHhh
Q 023704 163 SKDMAAIKAEIETERQEIHKG 183 (278)
Q Consensus 163 ~~kl~~LkaEIe~LrqEl~~~ 183 (278)
-..+.++...+..+++-..+-
T Consensus 300 p~~L~ele~RL~~l~~LkrKy 320 (563)
T TIGR00634 300 PERLNEIEERLAQIKRLKRKY 320 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 455666666665555533333
No 414
>PF10153 DUF2361: Uncharacterised conserved protein (DUF2361); InterPro: IPR019310 This entry represents the rRNA-processing protein EFG1 family. EFG1 is involved in rRNA processing.
Probab=74.71 E-value=46 Score=27.30 Aligned_cols=38 Identities=26% Similarity=0.310 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 52 AIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHL 89 (278)
Q Consensus 52 ~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l 89 (278)
..+-.+|+++|....--++-.+.++++|...+.+|..-
T Consensus 3 K~riRdieRLL~r~~Lp~~vR~~~Er~L~~L~~~l~~~ 40 (114)
T PF10153_consen 3 KKRIRDIERLLKRKDLPADVRVEKERELEALKRELEEA 40 (114)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34445788888666545667777788888877777663
No 415
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=74.58 E-value=32 Score=25.40 Aligned_cols=19 Identities=11% Similarity=0.408 Sum_probs=9.5
Q ss_pred hccHHHHHHHHHHHHHHHH
Q 023704 163 SKDMAAIKAEIETERQEIH 181 (278)
Q Consensus 163 ~~kl~~LkaEIe~LrqEl~ 181 (278)
.++|...+.+++.|++++.
T Consensus 60 ~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 60 KSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3445555555555555543
No 416
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=74.58 E-value=78 Score=29.88 Aligned_cols=55 Identities=15% Similarity=0.273 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh----hccHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 023704 138 LCVIKQEMIKDLNEINGDLAKARDE----SKDMAAIKAEIETERQEIHKGRAAIECEKK 192 (278)
Q Consensus 138 l~~~rqeL~~evq~LekDL~~~~~d----~~kl~~LkaEIe~LrqEl~~~raa~e~ekk 192 (278)
|.+...+|-.-++.|..|+...++. -++|++-+.+|+.|++.+..+..++..+|.
T Consensus 255 lkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~d~~~ 313 (330)
T KOG2991|consen 255 LKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVGDKKD 313 (330)
T ss_pred HHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3333344444444444444444443 256677777777777777766666665554
No 417
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=74.51 E-value=23 Score=32.37 Aligned_cols=66 Identities=24% Similarity=0.277 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 65 NQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQE 144 (278)
Q Consensus 65 nqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqe 144 (278)
-+-+..++..++..|...+.+..+|...+. ++.. +..+-.++.+|.+++.+|+.+....+.
T Consensus 127 ~~DvT~~y~D~~arl~~l~~~~~rl~~ll~--ka~~-----------------~~d~l~ie~~L~~v~~eIe~~~~~~~~ 187 (262)
T PF14257_consen 127 SEDVTEQYVDLEARLKNLEAEEERLLELLE--KAKT-----------------VEDLLEIERELSRVRSEIEQLEGQLKY 187 (262)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCC-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666555555444 2222 233344555555555655555555555
Q ss_pred HHHHH
Q 023704 145 MIKDL 149 (278)
Q Consensus 145 L~~ev 149 (278)
|..+|
T Consensus 188 l~~~v 192 (262)
T PF14257_consen 188 LDDRV 192 (262)
T ss_pred HHHhh
Confidence 55444
No 418
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=74.32 E-value=50 Score=33.44 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023704 68 LAATHVALKQELSLAEQELRHLS 90 (278)
Q Consensus 68 la~~~~~L~qEL~laqhEL~~l~ 90 (278)
|..+.+.++.+|+....+...|.
T Consensus 64 lva~~k~~r~~~~~l~~~N~~l~ 86 (472)
T TIGR03752 64 LVAEVKELRKRLAKLISENEALK 86 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445444444444443
No 419
>PF15463 ECM11: Extracellular mutant protein 11
Probab=74.30 E-value=19 Score=30.20 Aligned_cols=52 Identities=10% Similarity=0.254 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHH
Q 023704 128 LDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQE 179 (278)
Q Consensus 128 l~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqE 179 (278)
|.+-..-+++|...|.++...++.++.++++-... ..+...|...++.||+.
T Consensus 82 l~qf~~l~~kl~~~R~~~r~~~~~fe~eI~~R~eav~~~~~~l~~kL~~mk~~ 134 (139)
T PF15463_consen 82 LEQFSELMQKLKEARRKLRKKFAVFEDEINRRAEAVRAQGEQLDRKLEKMKEG 134 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455667889999999999999999999997777 77788888888888765
No 420
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=74.08 E-value=17 Score=26.93 Aligned_cols=44 Identities=14% Similarity=0.239 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh
Q 023704 118 LRVIESMHAELDRVRADIEKLC-VIKQEMIKDLNEINGDLAKARD 161 (278)
Q Consensus 118 lr~~e~lk~El~qlr~ei~~l~-~~rqeL~~evq~LekDL~~~~~ 161 (278)
-+.+++...-|.+...|+..+- +.+..+..+|.....++..+..
T Consensus 31 e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~ 75 (79)
T PF05008_consen 31 ERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKK 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335555555555555555554 4455555555555555555443
No 421
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=74.00 E-value=40 Score=26.41 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023704 119 RVIESMHAELDRVRADIEK 137 (278)
Q Consensus 119 r~~e~lk~El~qlr~ei~~ 137 (278)
..++++++||+.++..+..
T Consensus 24 ~e~~~L~eEI~~Lr~qve~ 42 (86)
T PF12711_consen 24 EENEALKEEIQLLREQVEH 42 (86)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3346666666666665543
No 422
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=73.97 E-value=51 Score=28.65 Aligned_cols=19 Identities=32% Similarity=0.349 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023704 74 ALKQELSLAEQELRHLSSV 92 (278)
Q Consensus 74 ~L~qEL~laqhEL~~l~~~ 92 (278)
.+-.+|...+.++..+..+
T Consensus 122 ~li~~l~~~~~~~~~~~kq 140 (192)
T PF05529_consen 122 SLIKELIKLEEKLEALKKQ 140 (192)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333
No 423
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=73.87 E-value=31 Score=24.92 Aligned_cols=47 Identities=21% Similarity=0.294 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023704 50 RIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASV 96 (278)
Q Consensus 50 ~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~ 96 (278)
++..+..+|+.|-..-..|......|+.++..++.|-.+...+|...
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56666678888888888888999999999999999999988888754
No 424
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=73.75 E-value=1.3e+02 Score=32.16 Aligned_cols=89 Identities=19% Similarity=0.225 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHhhh----hccHHHHHHHHHHHHHHHHhhhhhh-hhhhhhchhhHHHH----HHHHHhHHHHHH-
Q 023704 144 EMIKDLNEINGDLAKARDE----SKDMAAIKAEIETERQEIHKGRAAI-ECEKKNRASNHEQR----EIMEKNIISVAQ- 213 (278)
Q Consensus 144 eL~~evq~LekDL~~~~~d----~~kl~~LkaEIe~LrqEl~~~raa~-e~ekk~~~e~~eq~----q~meknl~~m~~- 213 (278)
.+.+++.+..++..+.+++ ..|..++.+-.+.++..+++....- +.-.--...++-|+ +++-+.=-+.||
T Consensus 527 k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarr 606 (961)
T KOG4673|consen 527 KHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARR 606 (961)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555443333 3566778888888888774433322 22222222333332 233333333344
Q ss_pred ------HHHHHHHHHHhHHhhHHHH
Q 023704 214 ------QIERLQAELANAEKRARAA 232 (278)
Q Consensus 214 ------e~eklrael~n~~~r~~a~ 232 (278)
||+.|.--|.-||.|.--.
T Consensus 607 Ed~~R~Ei~~LqrRlqaaE~R~eel 631 (961)
T KOG4673|consen 607 EDMFRGEIEDLQRRLQAAERRCEEL 631 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666777776544
No 425
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=73.73 E-value=1.1e+02 Score=31.33 Aligned_cols=122 Identities=16% Similarity=0.284 Sum_probs=0.0
Q ss_pred hhHhHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhh-hccHHH
Q 023704 96 VKAERDAEVRELYEKSLKLDAELRVI-ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDL-----AKARDE-SKDMAA 168 (278)
Q Consensus 96 ~~ae~e~~~r~l~~k~~kleaelr~~-e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL-----~~~~~d-~~kl~~ 168 (278)
++.+. +=.++.+|+..+... .++..-|..-..+........++|..++..+.+|| .+.... ..++..
T Consensus 7 l~~ed------l~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~ 80 (593)
T PF06248_consen 7 LSKED------LRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQLRD 80 (593)
T ss_pred CCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHH-----HhHHHHHHHHHHHHHHHHh
Q 023704 169 IKAEIETERQEIHKGRAAIECEKKNRASNHEQREIME-----KNIISVAQQIERLQAELAN 224 (278)
Q Consensus 169 LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~me-----knl~~m~~e~eklrael~n 224 (278)
..+++..|++|+......++.-+.. .+.-++.+..+ ++++.-+.-+++++..|..
T Consensus 81 a~~e~~~L~~eL~~~~~~l~~L~~L-~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~ 140 (593)
T PF06248_consen 81 AAEELQELKRELEENEQLLEVLEQL-QEIDELLEEVEEALKEGNYLDAADLLEELKSLLDD 140 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
No 426
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=73.57 E-value=88 Score=33.55 Aligned_cols=13 Identities=38% Similarity=0.498 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 023704 167 AAIKAEIETERQE 179 (278)
Q Consensus 167 ~~LkaEIe~LrqE 179 (278)
..++.+++.+-.+
T Consensus 575 ~~a~~~~~~~i~~ 587 (771)
T TIGR01069 575 KALKKEVESIIRE 587 (771)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 427
>PF06133 DUF964: Protein of unknown function (DUF964); InterPro: IPR010368 This entry consists of several relatively short bacterial and archaeal hypothetical sequences. It also includes YlbF and YmcA proteins which are involved in the formation of biofilms []. YlbF regulates sporulation prior to stage II, positively controlling the competence regulator ComK at a post-transcriptional level. It may also modulate the translation, stability or activity of ComS and may work together with YmcA to regulate community development [].; PDB: 2IAZ_C 2OEE_A 2OEQ_D 2PIH_A.
Probab=73.54 E-value=41 Score=26.18 Aligned_cols=83 Identities=16% Similarity=0.257 Sum_probs=56.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccH-HHHHHHHHHHHHHHHhhhh
Q 023704 107 LYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDM-AAIKAEIETERQEIHKGRA 185 (278)
Q Consensus 107 l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl-~~LkaEIe~LrqEl~~~ra 185 (278)
+++++..|-..|+..+.++ ...++...+.. ...-+.+-.+.+.+.+++..++..+... .+...++..+..++..-..
T Consensus 2 I~~~a~eL~~~I~~s~ey~-~~~~a~~~l~~-d~e~~~l~~~f~~~q~~~~~~q~~g~~~~~e~~~~l~~~~~~l~~~p~ 79 (108)
T PF06133_consen 2 IYDKANELAEAIKESEEYK-RYKAAEEALEA-DPEAQKLIEEFQKLQQELQNAQMYGKEPPKEEIEELQELQEELMQNPV 79 (108)
T ss_dssp HHHHHHHHHHHHHTSHHHH-HHHHHHHHHHC-SHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTSHH
T ss_pred HHHHHHHHHHHHHcCHHHH-HHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHcCHH
Confidence 4556666666666677665 66666665543 2234456666777788888887777666 7888888888888887777
Q ss_pred hhhhhh
Q 023704 186 AIECEK 191 (278)
Q Consensus 186 a~e~ek 191 (278)
.-+|-.
T Consensus 80 v~~y~~ 85 (108)
T PF06133_consen 80 VKEYLQ 85 (108)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666643
No 428
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=73.45 E-value=51 Score=32.28 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=11.8
Q ss_pred HHHHHH-HHHHHHHHHHhHHh
Q 023704 208 IISVAQ-QIERLQAELANAEK 227 (278)
Q Consensus 208 l~~m~~-e~eklrael~n~~~ 227 (278)
|..|+. |++.|+.++...+-
T Consensus 93 ~~~~a~~e~~~l~~~l~~le~ 113 (364)
T TIGR00020 93 TFNELDAELKALEKKLAELEL 113 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444443 66777777766663
No 429
>PRK13676 hypothetical protein; Provisional
Probab=73.41 E-value=41 Score=26.89 Aligned_cols=82 Identities=9% Similarity=0.195 Sum_probs=59.5
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cHHHHHHHHHHHHHHHHhhh
Q 023704 106 ELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESK-DMAAIKAEIETERQEIHKGR 184 (278)
Q Consensus 106 ~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~-kl~~LkaEIe~LrqEl~~~r 184 (278)
.+||++..|...|+..++++ ++..+...+.. ...-+.|-.+-+.+..++...+..+. -.++...++..+..++..-.
T Consensus 4 ni~d~A~eL~~aI~~s~ey~-~~~~A~~~l~~-d~~a~~li~~F~~~q~~~~~~q~~g~~~~~e~~~~l~~l~~~i~~n~ 81 (114)
T PRK13676 4 NIYDLANELERALRELPEYK-ALKEAKEAVKA-DEEAKKLFDEFRALQLEIQQKQMTGQEITEEEQQKAQELGQKIQQNE 81 (114)
T ss_pred hHHHHHHHHHHHHHcCHHHH-HHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCH
Confidence 58899999999999999986 77777777643 45556677777777778877665544 34677788888888776655
Q ss_pred hhhhh
Q 023704 185 AAIEC 189 (278)
Q Consensus 185 aa~e~ 189 (278)
..-+|
T Consensus 82 ~i~~y 86 (114)
T PRK13676 82 LLSKL 86 (114)
T ss_pred HHHHH
Confidence 55444
No 430
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=73.40 E-value=43 Score=26.36 Aligned_cols=24 Identities=13% Similarity=0.249 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 68 LAATHVALKQELSLAEQELRHLSS 91 (278)
Q Consensus 68 la~~~~~L~qEL~laqhEL~~l~~ 91 (278)
+.....-++.+|.....++.+|+.
T Consensus 5 f~~~~~~v~~el~~t~~d~~LLe~ 28 (99)
T PF10046_consen 5 FSKVSKYVESELEATNEDYNLLEN 28 (99)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 334445566666666666666643
No 431
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=73.13 E-value=71 Score=28.79 Aligned_cols=160 Identities=15% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHH---HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH---
Q 023704 63 QDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERD---AEVRELYEKSLKLDAELRVIESMHAELDRVRADIE--- 136 (278)
Q Consensus 63 ~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e---~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~--- 136 (278)
.+-..+-..+..|+.+|..++..+..+...+.......+ ..+..|--+++|+|-.+...+.-..|..+.-.+..
T Consensus 4 ~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~ 83 (205)
T KOG1003|consen 4 ADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKY 83 (205)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHhhh----hccHHHHHHHHHHHHHHHHhhhhhhhhh
Q 023704 137 ----------------------KLCVIKQEMIKDLNEINGDLAKARDE----SKDMAAIKAEIETERQEIHKGRAAIECE 190 (278)
Q Consensus 137 ----------------------~l~~~rqeL~~evq~LekDL~~~~~d----~~kl~~LkaEIe~LrqEl~~~raa~e~e 190 (278)
-..+.+.+|..++..+...+.-+..- .+++...+.+|..+...|..+..--|+-
T Consensus 84 eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~a 163 (205)
T KOG1003|consen 84 EEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFA 163 (205)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHH
Q ss_pred hhhchhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 023704 191 KKNRASNHEQREIMEKNIISVAQQIERLQAEL 222 (278)
Q Consensus 191 kk~~~e~~eq~q~meknl~~m~~e~eklrael 222 (278)
-+.-+.+-...--||..+..+.-+-..+..+|
T Consensus 164 ERsVakLeke~DdlE~kl~~~k~ky~~~~~eL 195 (205)
T KOG1003|consen 164 ERRVAKLEKERDDLEEKLEEAKEKYEEAKKEL 195 (205)
T ss_pred HHHHHHHcccHHHHHHhhHHHHHHHHHHHHHH
No 432
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=72.97 E-value=68 Score=28.50 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhh
Q 023704 166 MAAIKAEIETERQEIHKGRAAIEC 189 (278)
Q Consensus 166 l~~LkaEIe~LrqEl~~~raa~e~ 189 (278)
|...+.-++.|.+.|...|.+|+-
T Consensus 146 LeaAk~Rve~L~~QL~~Ar~D~~~ 169 (188)
T PF05335_consen 146 LEAAKRRVEELQRQLQAARADYEK 169 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555543
No 433
>PRK09866 hypothetical protein; Provisional
Probab=72.93 E-value=89 Score=33.34 Aligned_cols=98 Identities=12% Similarity=0.131 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023704 82 AEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARD 161 (278)
Q Consensus 82 aqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~ 161 (278)
.+.-++.+.....+.+-.-+...+.+ ..+.+.++.+|.++..|++.+..-.+..+.+|..-...+...-.
T Consensus 419 l~sa~~kl~~~a~~~~d~l~~r~~gl----------~~~~~~L~~~I~~~e~d~~~l~~~q~~~~~~~~~~~~~~~~~~~ 488 (741)
T PRK09866 419 LRSAAHKLLNYAQQAREYLDFRAHGL----------NVACEQLRQNIHQVEESLQLLQLNQAQVSGEIKHEIELALTSAN 488 (741)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555556666667777788 88899999999999999999999988888888776666555443
Q ss_pred h--hccHHHHHHHHHHHHH----HHHhhhhhhhh
Q 023704 162 E--SKDMAAIKAEIETERQ----EIHKGRAAIEC 189 (278)
Q Consensus 162 d--~~kl~~LkaEIe~Lrq----El~~~raa~e~ 189 (278)
. .++-..+.++|..+-+ =+.+.|+.||-
T Consensus 489 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 522 (741)
T PRK09866 489 HFLRQQQDAVNAQLAALFQDDSEPLSEIRTRCET 522 (741)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHhhhhHH
Confidence 3 4555666666655433 35566666664
No 434
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=72.71 E-value=30 Score=27.64 Aligned_cols=28 Identities=7% Similarity=0.240 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 125 HAELDRVRADIEKLCVIKQEMIKDLNEI 152 (278)
Q Consensus 125 k~El~qlr~ei~~l~~~rqeL~~evq~L 152 (278)
+.++.++...+.......+.+..+++.|
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~L 61 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHL 61 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4444444444444444444444444444
No 435
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=72.68 E-value=89 Score=29.68 Aligned_cols=100 Identities=22% Similarity=0.324 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHH
Q 023704 46 HLEDRIAIQHSDIQSLLQDNQR---LAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIE 122 (278)
Q Consensus 46 ~Le~~L~~q~~eIq~ll~dnqr---la~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e 122 (278)
.|.+.|..+.---+.+...-+| |...-+.|+--+...+.+++.+...+.++.++- +-|++. ++
T Consensus 78 ~i~e~ls~~~~~~~~~~~aa~Rplel~e~Ekvlk~aIq~i~~~~q~~~~~Lnnvasde-----------a~L~~K---ie 143 (338)
T KOG3647|consen 78 TICEMLSKELLHKESLMSAAQRPLELLEVEKVLKSAIQAIQVRLQSSRAQLNNVASDE-----------AALGSK---IE 143 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-----------HHHHHH---HH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKA 159 (278)
Q Consensus 123 ~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~ 159 (278)
--|.|+.+.+..+..|.+.|-....+-..-+++|+++
T Consensus 144 rrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkl 180 (338)
T KOG3647|consen 144 RRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKL 180 (338)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
No 436
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=72.64 E-value=1.3e+02 Score=31.81 Aligned_cols=32 Identities=25% Similarity=0.216 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023704 65 NQRLAATHVALKQELSLAEQELRHLSSVAASV 96 (278)
Q Consensus 65 nqrla~~~~~L~qEL~laqhEL~~l~~~i~~~ 96 (278)
.+=+..+...|+++|..++..|+.........
T Consensus 269 ~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~ 300 (726)
T PRK09841 269 LEFLQRQLPEVRSELDQAEEKLNVYRQQRDSV 300 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33455666667777777777777776655433
No 437
>PRK11281 hypothetical protein; Provisional
Probab=72.61 E-value=1.7e+02 Score=32.91 Aligned_cols=29 Identities=28% Similarity=0.324 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023704 69 AATHVALKQELSLAEQELRHLSSVAASVK 97 (278)
Q Consensus 69 a~~~~~L~qEL~laqhEL~~l~~~i~~~~ 97 (278)
-+....|++.|+.+..++....+.+...+
T Consensus 79 ~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk 107 (1113)
T PRK11281 79 KEETEQLKQQLAQAPAKLRQAQAELEALK 107 (1113)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 33344444444444444444444444433
No 438
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=72.51 E-value=60 Score=27.62 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 023704 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELS 80 (278)
Q Consensus 44 ~~~Le~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~ 80 (278)
++.+++++...+..+.++.............+.....
T Consensus 28 f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 64 (229)
T PF03114_consen 28 FEELEEKFKQLEESIKKLQKSLKKYLDSIKKLSASQK 64 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhh
Confidence 6677777777777777777777766665555554443
No 439
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=72.46 E-value=53 Score=27.02 Aligned_cols=100 Identities=15% Similarity=0.287 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhh--hccH--HHHHHHHHHHHHHHHhhhhhhhhhhh
Q 023704 120 VIESMHAELDRVRADIEKLCVIKQEMIKDLNEIN---GDLAKARDE--SKDM--AAIKAEIETERQEIHKGRAAIECEKK 192 (278)
Q Consensus 120 ~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~Le---kDL~~~~~d--~~kl--~~LkaEIe~LrqEl~~~raa~e~ekk 192 (278)
..++.-...++++.++.+....|+.|..+++.=+ .+|.-+..| .=|+ |.| +++++..+|+.++
T Consensus 6 kmee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvL------vkqel~EAr~nV~---- 75 (120)
T KOG3478|consen 6 KMEEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVL------VKQELEEARTNVG---- 75 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchh------hHHHHHHHHhhHH----
Confidence 3444445566677788888888888887776533 344444444 2222 222 3455555555442
Q ss_pred hchhh-HHHHHHHHHhHHHHHHHHHHHHHHHHhHHhhH
Q 023704 193 NRASN-HEQREIMEKNIISVAQQIERLQAELANAEKRA 229 (278)
Q Consensus 193 ~~~e~-~eq~q~meknl~~m~~e~eklrael~n~~~r~ 229 (278)
.+.|. ....+-.|.++-.|-+|.+|.|..+++.-+-+
T Consensus 76 kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~ 113 (120)
T KOG3478|consen 76 KRLEFISKEIKRLENQIRDSQEEFEKQREAVIKLQQAA 113 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12221 23456778888889999999999999887544
No 440
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=72.41 E-value=85 Score=29.36 Aligned_cols=51 Identities=20% Similarity=0.259 Sum_probs=23.1
Q ss_pred HHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhhHhHHHHHHHH
Q 023704 57 DIQSLLQDNQRLAATHVALK----QELSLAEQELRHLSSVAASVKAERDAEVREL 107 (278)
Q Consensus 57 eIq~ll~dnqrla~~~~~L~----qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l 107 (278)
.++.+|...+.+..-...|. ..|..++.||+-.+....+--+.-+.|+..|
T Consensus 39 ~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l 93 (258)
T PF15397_consen 39 KVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQL 93 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45555555444444433332 3455555555555544444433333333333
No 441
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=72.32 E-value=93 Score=31.92 Aligned_cols=69 Identities=14% Similarity=0.316 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 023704 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEK 191 (278)
Q Consensus 123 ~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~raa~e~ek 191 (278)
.+...+.....+.+.+....+++...|..|+.||.--+.+ ..||..|-.-|=.|...|.+.+-.|+--|
T Consensus 445 aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 445 ALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444555555555555555555555 55555555555555555555555555444
No 442
>KOG1981 consensus SOK1 kinase belonging to the STE20/SPS1/GC kinase family [Signal transduction mechanisms]
Probab=72.31 E-value=61 Score=33.14 Aligned_cols=62 Identities=21% Similarity=0.271 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 023704 146 IKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELAN 224 (278)
Q Consensus 146 ~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael~n 224 (278)
-..++.|..||..++ |..+|-.|+ ...+|||||.+.+.+.|--. +|-.--+=+.+.|.|+..
T Consensus 217 lq~l~lMK~DiaN~~------------I~~lrp~L~--~~sveyEkk~Fqk~l~~~~~---~l~~t~~WL~~~~~e~~~ 278 (513)
T KOG1981|consen 217 LQLLELMKLDIANYQ------------IRILRPALQ--ENSVEYEKKKFQKLLGQAPV---SLPFTRQWLDKARSELET 278 (513)
T ss_pred HHHHHHHHHHHHHHH------------HHHhhHHHH--HhhHHHHHHHHHHHHhhCCC---CCcHHHHHHHHHhccccc
Confidence 334555555555543 556666777 78999999999999984321 333344567788888753
No 443
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=72.00 E-value=56 Score=28.01 Aligned_cols=42 Identities=21% Similarity=0.450 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKA 159 (278)
Q Consensus 118 lr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~ 159 (278)
...+..+.+++..+..++++|...++.+..++.+|..=|..+
T Consensus 46 ~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~ 87 (162)
T PF05565_consen 46 AKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDA 87 (162)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777888888888888888888888888887766653
No 444
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=71.47 E-value=30 Score=25.16 Aligned_cols=55 Identities=18% Similarity=0.300 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--Hhhh--hccHHHHHHHHHHHHHHHHhhhhhh
Q 023704 133 ADIEKLCVIKQEMIKDLNEINGDLAK--ARDE--SKDMAAIKAEIETERQEIHKGRAAI 187 (278)
Q Consensus 133 ~ei~~l~~~rqeL~~evq~LekDL~~--~~~d--~~kl~~LkaEIe~LrqEl~~~raa~ 187 (278)
.++.+|......+..++..+.+-|.. |-+. ..-+..-+..+..+..++.+++..+
T Consensus 4 ~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l 62 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEAL 62 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555555544432 2222 2223344444444444444444443
No 445
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=71.35 E-value=61 Score=27.38 Aligned_cols=33 Identities=12% Similarity=0.045 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGD 155 (278)
Q Consensus 123 ~lk~El~qlr~ei~~l~~~rqeL~~evq~LekD 155 (278)
.++.++.+....+.........+..++..+..+
T Consensus 23 ~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~ 55 (135)
T TIGR03495 23 NARADLERANRVLKAQQAELASKANQLIVLLAL 55 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344444444444444444444444444444333
No 446
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.95 E-value=22 Score=32.94 Aligned_cols=53 Identities=15% Similarity=0.226 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHh
Q 023704 130 RVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHK 182 (278)
Q Consensus 130 qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~ 182 (278)
.++.++..++....+|.++|..+++.+..++.. ...-.+++.+++.|+..+-.
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~aG~ 107 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRMLAGS 107 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHhcc
Confidence 466777777777777777777777777777733 45556666778888776644
No 447
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=70.69 E-value=46 Score=32.20 Aligned_cols=108 Identities=19% Similarity=0.248 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhccHH-----HHHH----HHH----HHHHHHHhhh
Q 023704 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLA---KARDESKDMA-----AIKA----EIE----TERQEIHKGR 184 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~---~~~~d~~kl~-----~Lka----EIe----~LrqEl~~~r 184 (278)
.+..|.++...+.++..+.-..|-|.=++.-|++|+. +|++....|+ +-.+ ++. ....+.+..=
T Consensus 14 ~~~~k~~t~e~k~~vD~~~LqLqNl~YE~~hL~kEI~~C~~F~s~~~~i~Lv~~eEF~~~ap~~~~~~~~~~~~~H~lml 93 (355)
T PF09766_consen 14 IKKAKDETAEAKQEVDALHLQLQNLLYEKSHLQKEIKKCLDFKSKYEDIELVPVEEFYAKAPEEISDPELTEDDEHQLML 93 (355)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCCCcCccHHHHHHhChhhccccccCCCChHHHHH
Confidence 3344444555555555555555555555566666665 4555543331 1111 111 1123344445
Q ss_pred hhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHhh
Q 023704 185 AAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKR 228 (278)
Q Consensus 185 aa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael~n~~~r 228 (278)
+-+++|-..+-++.++.+.+++.-..+..|+.+.+..|.+....
T Consensus 94 ~RL~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~ 137 (355)
T PF09766_consen 94 ARLEFELEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQ 137 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 66777888888999999999999999999999999999888754
No 448
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=70.45 E-value=91 Score=28.90 Aligned_cols=104 Identities=20% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHH---HHHHHHHHHHhhhhhhhhhhhhchhhHH
Q 023704 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKA---EIETERQEIHKGRAAIECEKKNRASNHE 199 (278)
Q Consensus 124 lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~Lka---EIe~LrqEl~~~raa~e~ekk~~~e~~e 199 (278)
++.-...++.+++.+.....++...++.+-++|.+|..+ ...-+.++. ..-...+-++.....++--|+.+.-.-.
T Consensus 65 ~~~~~~~~~~e~e~~a~~H~~la~~L~~~~~~l~~~~~~~~k~rK~~ke~~~~~~~~~~~~~~~~~~~~KaK~~Y~~~c~ 144 (269)
T cd07673 65 FAPVWDVFKTSTEKLANCHLELVRKLQELIKEVQKYGEEQVKSHKKTKEEVAGTLEAVQNIQSITQALQKSKENYNAKCL 144 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHhh
Q 023704 200 QREIMEKNIISVAQQIERLQAELANAEKR 228 (278)
Q Consensus 200 q~q~meknl~~m~~e~eklrael~n~~~r 228 (278)
....+.+.=.+ ..+|||+...+..|+..
T Consensus 145 e~e~~~~~~~t-~k~leK~~~k~~ka~~~ 172 (269)
T cd07673 145 EQERLKKEGAT-QREIEKAAVKSKKATES 172 (269)
T ss_pred HHHHHHhcCCC-HHHHHHHHHHHHHHHHH
No 449
>PLN02320 seryl-tRNA synthetase
Probab=70.19 E-value=30 Score=35.27 Aligned_cols=29 Identities=7% Similarity=0.259 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 123 SMHAELDRVRADIEKLCVIKQEMIKDLNE 151 (278)
Q Consensus 123 ~lk~El~qlr~ei~~l~~~rqeL~~evq~ 151 (278)
.+..+..++..+++.|.++++.++.+|..
T Consensus 97 ~ld~~~r~~~~~~~~lr~ern~~sk~i~~ 125 (502)
T PLN02320 97 ELYENMLALQKEVERLRAERNAVANKMKG 125 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444555555555566655555543
No 450
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=70.02 E-value=88 Score=28.54 Aligned_cols=62 Identities=23% Similarity=0.393 Sum_probs=36.1
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhhhhhhh-hhchh-----hHHHHHH-----------HHHhHHHHHHHHHHHHHHHHhHH
Q 023704 164 KDMAAIKAEIETERQEIHKGRAAIECEK-KNRAS-----NHEQREI-----------MEKNIISVAQQIERLQAELANAE 226 (278)
Q Consensus 164 ~kl~~LkaEIe~LrqEl~~~raa~e~ek-k~~~e-----~~eq~q~-----------meknl~~m~~e~eklrael~n~~ 226 (278)
+-...|++|.|+|+-+|.+++..+-.|- |..++ ++|.+.. -|-. --.-+||--||++|+.++
T Consensus 116 sEF~~lr~e~EklkndlEk~ks~lr~ei~~~~a~~rLdLNLEkgr~~d~~~~~~l~~~e~s-~kId~Ev~~lk~qi~s~K 194 (220)
T KOG3156|consen 116 SEFANLRAENEKLKNDLEKLKSSLRHEISKTTAEFRLDLNLEKGRIKDESSSHDLQIKEIS-TKIDQEVTNLKTQIESVK 194 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhceeecchhhccccchhhhcchhHhHHH-HHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777777766654 22222 1222211 1111 234469999999998876
No 451
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=70.00 E-value=82 Score=28.16 Aligned_cols=42 Identities=19% Similarity=0.325 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023704 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE 162 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d 162 (278)
+..++.+|.+++..+-...+..+.+..++..+...+.+|...
T Consensus 33 irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~ 74 (219)
T TIGR02977 33 IQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEK 74 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555777777777777777777777777777777776633
No 452
>PLN02939 transferase, transferring glycosyl groups
Probab=69.98 E-value=1.8e+02 Score=32.20 Aligned_cols=15 Identities=13% Similarity=0.164 Sum_probs=7.7
Q ss_pred HHHHHHHHHHhHHhh
Q 023704 214 QIERLQAELANAEKR 228 (278)
Q Consensus 214 e~eklrael~n~~~r 228 (278)
|.-.||.=+-+-+.|
T Consensus 436 ~a~~lr~~~~~~~~~ 450 (977)
T PLN02939 436 DAKLLREMVWKRDGR 450 (977)
T ss_pred hHHHHHHHHHhhhhh
Confidence 555566555444433
No 453
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=69.83 E-value=36 Score=35.14 Aligned_cols=11 Identities=9% Similarity=0.205 Sum_probs=4.9
Q ss_pred CcccccCCccC
Q 023704 16 SQFTMSGRRVL 26 (278)
Q Consensus 16 ~svTleGD~yd 26 (278)
..|+++|-..+
T Consensus 99 ~~l~l~g~~v~ 109 (555)
T TIGR03545 99 EELAIEGLAFG 109 (555)
T ss_pred eEEEEecCEEE
Confidence 44444444433
No 454
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=69.82 E-value=93 Score=28.74 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhh
Q 023704 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAI 187 (278)
Q Consensus 127 El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~ 187 (278)
|..-+-..++..-..|..+..+...+...+...++| | ..+..||+.+...+..+..++
T Consensus 143 eyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k~~~d--r-~~~~~ev~~~e~kve~a~~~~ 200 (243)
T cd07666 143 EYVLYSETLMGVIKRRDQIQAELDSKVEALANKKAD--R-DLLKEEIEKLEDKVECANNAL 200 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--H-HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555555555666665555554433 2 355556665555555554443
No 455
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=69.75 E-value=77 Score=28.25 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=10.7
Q ss_pred HHHHHHhhhhhhhhhhhh
Q 023704 176 ERQEIHKGRAAIECEKKN 193 (278)
Q Consensus 176 LrqEl~~~raa~e~ekk~ 193 (278)
..+.+..++..|+.|+..
T Consensus 142 ae~ii~~A~~~Ie~Ek~~ 159 (205)
T PRK06231 142 ANLIIFQARQEIEKERRE 159 (205)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334556666777766654
No 456
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=69.40 E-value=7.7 Score=31.61 Aligned_cols=46 Identities=11% Similarity=0.321 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhh
Q 023704 144 EMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIEC 189 (278)
Q Consensus 144 eL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ 189 (278)
.+.+++..+.+++...+....+++.++++++.+++++......+-.
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~lP~ 48 (144)
T PF04350_consen 3 TLQAQIQQLQQELAQLKEKVANLEELKKQLEQLEQQLEELLKKLPA 48 (144)
T ss_dssp ---------HHHHHHTGGG-SSHHHHHHHHHHHHHHHHHHHHCTTG
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4566777778888777766888999999999888888777766643
No 457
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=69.34 E-value=13 Score=29.86 Aligned_cols=36 Identities=8% Similarity=0.199 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEING 154 (278)
Q Consensus 119 r~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~Lek 154 (278)
.....+++++.+++.+++++....+.|..+|..|..
T Consensus 27 ~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 27 LDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 345556666666666666666666666666665553
No 458
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=69.22 E-value=49 Score=25.25 Aligned_cols=48 Identities=15% Similarity=0.275 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHH
Q 023704 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIK 170 (278)
Q Consensus 123 ~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~Lk 170 (278)
.+..-+..+...|..+......+..++....+.+.....+.+++.-|+
T Consensus 49 ~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~ 96 (123)
T PF02050_consen 49 NYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEKLK 96 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555555555555544444444443
No 459
>PF14282 FlxA: FlxA-like protein
Probab=69.17 E-value=16 Score=29.26 Aligned_cols=16 Identities=19% Similarity=0.389 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 023704 166 MAAIKAEIETERQEIH 181 (278)
Q Consensus 166 l~~LkaEIe~LrqEl~ 181 (278)
+..|..+|..|..+|.
T Consensus 53 ~q~Lq~QI~~LqaQI~ 68 (106)
T PF14282_consen 53 IQLLQAQIQQLQAQIA 68 (106)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 460
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=69.09 E-value=1.1e+02 Score=30.72 Aligned_cols=9 Identities=22% Similarity=0.479 Sum_probs=5.9
Q ss_pred HHHHHHHHH
Q 023704 214 QIERLQAEL 222 (278)
Q Consensus 214 e~eklrael 222 (278)
..+|||+..
T Consensus 261 qldkL~ktN 269 (447)
T KOG2751|consen 261 QLDKLRKTN 269 (447)
T ss_pred HHHHHHhhh
Confidence 566777664
No 461
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=68.94 E-value=45 Score=24.75 Aligned_cols=63 Identities=14% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 023704 51 IAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAE 127 (278)
Q Consensus 51 L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~E 127 (278)
|......|..++.-+++|-.+...|++++.....|=..|..... + -..|+||-|.+..+|.++
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne------------~--Ar~rvEamI~RLk~leq~ 64 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNE------------Q--ARQKVEAMITRLKALEQH 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------H--HHHHHHHHHHhhhhhccC
No 462
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=68.92 E-value=63 Score=26.44 Aligned_cols=62 Identities=18% Similarity=0.351 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhh-hccHHHHHHHHHHHHHHH
Q 023704 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDL---NEINGDLAKARDE-SKDMAAIKAEIETERQEI 180 (278)
Q Consensus 119 r~~e~lk~El~qlr~ei~~l~~~rqeL~~ev---q~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl 180 (278)
..+..++..|..++..+..+......+.+.. ..+.++|.....+ ......++..|+.|+...
T Consensus 6 ~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~ 71 (151)
T cd00179 6 EEVEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESN 71 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555544444332 3455566665555 555566666666665543
No 463
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=68.91 E-value=66 Score=26.68 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 125 HAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKA 159 (278)
Q Consensus 125 k~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~ 159 (278)
+.+|..++.++..+....+.|..+...+.+++...
T Consensus 54 ~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 54 EPELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444443
No 464
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=68.67 E-value=1.1e+02 Score=28.93 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 113 KLDAELRVIESMHAELDRVRADIEKLCVI 141 (278)
Q Consensus 113 kleaelr~~e~lk~El~qlr~ei~~l~~~ 141 (278)
+|.+.+..++.++=++.=||.-+.++...
T Consensus 153 e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea 181 (269)
T PF05278_consen 153 EMIATLKDLESAKVKVDWLRSKLEEILEA 181 (269)
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHH
Confidence 34444555555555555566555554433
No 465
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=68.45 E-value=1.6e+02 Score=30.78 Aligned_cols=9 Identities=11% Similarity=-0.020 Sum_probs=7.0
Q ss_pred eEEEeecCC
Q 023704 7 SLHTTLHNH 15 (278)
Q Consensus 7 tlivtfhp~ 15 (278)
++||||.|.
T Consensus 303 tlIi~csPs 311 (607)
T KOG0240|consen 303 TLIICCSPS 311 (607)
T ss_pred EEEEecCCc
Confidence 677888776
No 466
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=68.38 E-value=3.1 Score=39.64 Aligned_cols=19 Identities=11% Similarity=0.197 Sum_probs=16.9
Q ss_pred cccCceEEEeecCCCcccc
Q 023704 2 NIYGNSLHTTLHNHSQFTM 20 (278)
Q Consensus 2 ~ifG~tlivtfhp~~svTl 20 (278)
.|||.++||+|||..++||
T Consensus 104 ~v~G~c~Vicf~Pnh~ltL 122 (354)
T KOG2958|consen 104 SVKGVCKVICFSPNHNLTL 122 (354)
T ss_pred eecceeEEEEeCCcccccc
Confidence 4899999999999988875
No 467
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=68.38 E-value=1.2e+02 Score=29.44 Aligned_cols=44 Identities=9% Similarity=0.206 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 46 HLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHL 89 (278)
Q Consensus 46 ~Le~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l 89 (278)
.++..+...+.++.........+......++.++..++.++...
T Consensus 96 ~~~~~l~~A~a~l~~a~~~~~~~~~~~~~~~a~l~~a~a~l~~a 139 (390)
T PRK15136 96 DAEQAFEKAKTALANSVRQTHQLMINSKQYQANIELQKTALAQA 139 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34444444444443332222222222233344444444444443
No 468
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=68.32 E-value=52 Score=25.22 Aligned_cols=23 Identities=13% Similarity=0.312 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023704 121 IESMHAELDRVRADIEKLCVIKQ 143 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rq 143 (278)
...++.++..+...+..+....+
T Consensus 7 ~~~l~~~l~~~~~q~~~l~~~~~ 29 (106)
T PF01920_consen 7 FQELNQQLQQLEQQIQQLERQLR 29 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 469
>PF02669 KdpC: K+-transporting ATPase, c chain; InterPro: IPR003820 Kdp, the high affinity ATP-driven K+-transport system of Escherichia coli, is a complex of the membrane-bound subunits KdpA, KdpB, KdpC and the small peptide KdpF. KdpC forms strong interactions with the KdpA subunit, serving to assemble and stabilise the Kdp complex []. It has been suggested that KdpC could be one of the connecting links between the energy providing subunit KdpB and the K+- transporting subunit KdpA []. The K+ transport system actively transports K+ ions via ATP hydrolysis.; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0016020 membrane
Probab=68.25 E-value=9.4 Score=33.99 Aligned_cols=47 Identities=19% Similarity=0.199 Sum_probs=28.1
Q ss_pred ccCceEE-------EeecCCCcccccCCccCCCCCCCCCCCCCCCCch-HHHHHHHHH
Q 023704 3 IYGNSLH-------TTLHNHSQFTMSGRRVLREPPLSTRALPPQHSPS-LHHLEDRIA 52 (278)
Q Consensus 3 ifG~tli-------vtfhp~~svTleGD~ydpeG~LsGGs~p~~~~~l-~~~Le~~L~ 52 (278)
|-|+.|| -+|||.+|-+=.++ ||+.+ ||||.-.++.|. ....++++.
T Consensus 49 vvGS~LIgQ~ft~~~yF~~RPSA~~y~~-y~~~~--SggSNl~psn~~l~~~v~~~~~ 103 (188)
T PF02669_consen 49 VVGSALIGQPFTSPRYFHPRPSAVDYNT-YNAAA--SGGSNLGPSNPELRERVEERIA 103 (188)
T ss_pred EEEEEEecccCCCCCeeeCCCCCcCCCC-CCccc--cccccCCCCChHHHHHHHHHHH
Confidence 5688888 89999977752222 66654 578843344443 344444433
No 470
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=68.23 E-value=78 Score=29.10 Aligned_cols=27 Identities=15% Similarity=0.134 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhchh
Q 023704 167 AAIKAEIETERQEIHKGRAAIECEKKNRAS 196 (278)
Q Consensus 167 ~~LkaEIe~LrqEl~~~raa~e~ekk~~~e 196 (278)
...+.+++.+ +.+.+..++.||+.-..
T Consensus 93 ~~A~~ea~~~---~~~a~~~ie~Ek~~a~~ 119 (250)
T PRK14474 93 NEAREDVATA---RDEWLEQLEREKQEFFK 119 (250)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3344444433 45566677777655443
No 471
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=68.21 E-value=1.3e+02 Score=29.75 Aligned_cols=67 Identities=9% Similarity=0.152 Sum_probs=32.4
Q ss_pred HHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHhhH
Q 023704 152 INGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKRA 229 (278)
Q Consensus 152 LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~eklrael~n~~~r~ 229 (278)
+..++.++.+. ...+..+++.+..|.+++..+++.... .-.-+..|..+-||++-.|.=+...=.|-
T Consensus 329 ~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~-----------~~~~~~~l~~L~Re~~~~r~~ye~lL~r~ 396 (458)
T COG3206 329 IAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSK-----------LPKLQVQLRELEREAEAARSLYETLLQRY 396 (458)
T ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhh-----------chHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444333 333445555555555555554444332 22233455566677777766554444443
No 472
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=68.06 E-value=60 Score=31.61 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=9.7
Q ss_pred HhHHHHHHHHHHHHHHHHhHH
Q 023704 206 KNIISVAQQIERLQAELANAE 226 (278)
Q Consensus 206 knl~~m~~e~eklrael~n~~ 226 (278)
+|+.....+...+.+.++.++
T Consensus 176 ~~~~~l~~~~~~~~~~v~~a~ 196 (352)
T COG1566 176 QNLALLESEVSGAQAQVASAE 196 (352)
T ss_pred HHHHHHhhhhccchhHHHHHH
Confidence 444444444444444444443
No 473
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=67.98 E-value=1.2e+02 Score=29.42 Aligned_cols=60 Identities=13% Similarity=0.248 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHH
Q 023704 121 IESMHAELDRVRADIEKLCVIKQE------MIKDLNEINGDLAKARDESKDMAAIKAEIETERQEI 180 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~rqe------L~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl 180 (278)
++.+...+..+..++.++...++. ...+|..|-.=|.+|..=...||.+-.-|..|+.=+
T Consensus 263 Ld~i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~~lH 328 (388)
T PF04912_consen 263 LDSIERRLKSLLSELEELAEKRKEAKEDAEQESKIDELYEILPRWDPYAPSLPSLVERLKTLKSLH 328 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 455555555555555555544443 246677777777777766777777777776665433
No 474
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.66 E-value=1.4e+02 Score=30.00 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=36.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 023704 107 LYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQE-MIKDLNEINGD 155 (278)
Q Consensus 107 l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqe-L~~evq~LekD 155 (278)
+.|++.++++.+..+.+-..++.-+...+.++....++ |..+++.+++.
T Consensus 95 ~q~e~~~~~~~~~~N~e~dke~~~le~~L~~~~~e~~~~lq~~~e~~~kk 144 (438)
T COG4487 95 LQDEIAKLEALELLNLEKDKELELLEKELDELSKELQKQLQNTAEIIEKK 144 (438)
T ss_pred HHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999998887777778888888877777666555 56666655543
No 475
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=67.51 E-value=83 Score=27.26 Aligned_cols=57 Identities=16% Similarity=0.387 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccH
Q 023704 100 RDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDM 166 (278)
Q Consensus 100 ~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl 166 (278)
+|..||+.|+++ ..+.-+|.-++..-..|...|.+|.-.+..+..=+.++..=.+++
T Consensus 75 sE~dik~AYe~A----------~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi 131 (159)
T PF05384_consen 75 SEEDIKEAYEEA----------HELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQI 131 (159)
T ss_pred CHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466667775554 344455556666666777777777777777776666655444444
No 476
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=67.49 E-value=15 Score=35.76 Aligned_cols=109 Identities=17% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 023704 115 DAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKN 193 (278)
Q Consensus 115 eaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~ 193 (278)
|...+.++.++........++.++....++|..++..|.+...+...+ ......+.....+|...+..++..|.
T Consensus 80 E~~~K~~~~~~e~~ek~~k~l~el~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris----- 154 (370)
T PF02994_consen 80 ENIIKNLEVLKEEKEKSIKELNELKKRIKELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERIS----- 154 (370)
T ss_dssp --------------------------------------H-------------------------HHHHHHHHHHH-----
T ss_pred HhhhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHH-----
Q ss_pred chhhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHhhHH
Q 023704 194 RASNHEQREIMEKNIISVAQQIERLQAELANAEKRAR 230 (278)
Q Consensus 194 ~~e~~eq~q~meknl~~m~~e~eklrael~n~~~r~~ 230 (278)
++-+.+..|++.+-.+..++.+|..-|...+.|.|
T Consensus 155 --~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsR 189 (370)
T PF02994_consen 155 --ELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSR 189 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc
No 477
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=67.45 E-value=2.8 Score=33.88 Aligned_cols=44 Identities=18% Similarity=0.269 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 46 HLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHL 89 (278)
Q Consensus 46 ~Le~~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l 89 (278)
.....|..+..++..+..++..|-.....|+.+|...+.....+
T Consensus 22 eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l 65 (131)
T PF05103_consen 22 EVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESL 65 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 45555555555555555555555444444444444444333333
No 478
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=67.43 E-value=46 Score=26.82 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=10.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Q 023704 201 REIMEKNIISVAQQIERLQAELA 223 (278)
Q Consensus 201 ~q~meknl~~m~~e~eklrael~ 223 (278)
...+++++-.+...+.+++.++.
T Consensus 95 ~~~l~~~~~~l~~~l~~l~~~~~ 117 (126)
T TIGR00293 95 IEELEKAIEKLQEALAELASRAQ 117 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 479
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=67.33 E-value=1.4e+02 Score=29.70 Aligned_cols=41 Identities=12% Similarity=0.238 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023704 50 RIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVA 93 (278)
Q Consensus 50 ~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i 93 (278)
.+.....++..+-....+|...+..|+.+ .++|++.+.+.+
T Consensus 213 ~l~~~~~el~eik~~~~~L~~~~e~Lk~~---~~~e~~~~~~~L 253 (395)
T PF10267_consen 213 GLQKILEELREIKESQSRLEESIEKLKEQ---YQREYQFILEAL 253 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 33444444444445555555555555544 344555444433
No 480
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=67.12 E-value=69 Score=26.21 Aligned_cols=92 Identities=10% Similarity=0.091 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHH-----HHHhhhhhhhhhh
Q 023704 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQ-----EIHKGRAAIECEK 191 (278)
Q Consensus 118 lr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~Lrq-----El~~~raa~e~ek 191 (278)
|..+...-..|..++..+.........+..++..+..+..+.-.+ ..+|+.|+........ +....+..++-.+
T Consensus 15 i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~~s~~~r~~~~q~~~L~ 94 (151)
T cd00179 15 IDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALNGSSVDRIRKTQHSGLS 94 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHH
Confidence 333333333444444433332222334555555555555555555 5555666555443321 1222234444444
Q ss_pred hhchhhHHHHHHHHHhHH
Q 023704 192 KNRASNHEQREIMEKNII 209 (278)
Q Consensus 192 k~~~e~~eq~q~meknl~ 209 (278)
+.+.+.+..-|..++++.
T Consensus 95 ~~f~~~m~~fq~~Q~~~~ 112 (151)
T cd00179 95 KKFVEVMTEFNKAQRKYR 112 (151)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555555544
No 481
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=67.03 E-value=98 Score=27.92 Aligned_cols=150 Identities=21% Similarity=0.332 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHH--HHHHHHHHHHHHHHHH
Q 023704 60 SLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVI--ESMHAELDRVRADIEK 137 (278)
Q Consensus 60 ~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~--e~lk~El~qlr~ei~~ 137 (278)
..|.+-+..-.....+++-|+-+-.++..+...+...+.. +...... .... +.+...|.+..+.+..
T Consensus 28 ~~L~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~-~~~~~~~----------~~~~s~~eLeq~l~~~~~~L~~ 96 (240)
T PF12795_consen 28 SFLDEIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQ-DAPSKEI----------LANLSLEELEQRLSQEQAQLQE 96 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcc-ccccccC----------cccCCHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhHHHHHHHHHH
Q 023704 138 LCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIER 217 (278)
Q Consensus 138 l~~~rqeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl~~m~~e~ek 217 (278)
+.....++..++..+..-..++. +.+.+.+..++.+...+......=+ ..-.-.+.-..+-.+...-.++.-
T Consensus 97 ~q~~l~~~~~~l~~~~~~p~~aq---~~l~~~~~~l~ei~~~L~~~~~~~~-----~~l~~a~~~~l~ae~~~l~~~~~~ 168 (240)
T PF12795_consen 97 LQEQLQQENSQLIEIQTRPERAQ---QQLSEARQRLQEIRNQLQNLPPNGE-----SPLSEAQRWLLQAELAALEAQIEM 168 (240)
T ss_pred HHHHHHHHHHHHHHHHccHHHHH---HHHHHHHHHHHHHHHHHhccCCCCc-----chhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhHHhh
Q 023704 218 LQAELANAEKR 228 (278)
Q Consensus 218 lrael~n~~~r 228 (278)
|+.|+.+...|
T Consensus 169 le~el~s~~~r 179 (240)
T PF12795_consen 169 LEQELLSNNNR 179 (240)
T ss_pred HHHHHHCcHHH
No 482
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=66.98 E-value=57 Score=25.25 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=12.3
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhhhh
Q 023704 165 DMAAIKAEIETERQEIHKGRAAIECE 190 (278)
Q Consensus 165 kl~~LkaEIe~LrqEl~~~raa~e~e 190 (278)
++..|...++.+...+..++..|+|=
T Consensus 73 ~~~~l~~q~~~l~~~l~~l~~~~~~~ 98 (127)
T smart00502 73 KLKVLEQQLESLTQKQEKLSHAINFT 98 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555555555443
No 483
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=66.68 E-value=79 Score=26.71 Aligned_cols=64 Identities=14% Similarity=0.308 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhh
Q 023704 121 IESMHAELDRVRADIEKLCVIK-------------QEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAI 187 (278)
Q Consensus 121 ~e~lk~El~qlr~ei~~l~~~r-------------qeL~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~ 187 (278)
+-.-+.+|+++..-+.+....+ --...+|+++.+||+. ...++.+.+.++-.+..+|.+.+.++
T Consensus 38 ~~~r~seldqA~~~~~eae~k~~~~~a~~P~~~~~~~wqlkvr~a~~dv~n---kq~~l~AA~~~l~~~~~el~~~~~al 114 (136)
T PF11570_consen 38 LNGRRSELDQANKKVKEAEIKQDEFFANNPPHEYGRGWQLKVRRAQKDVQN---KQNKLKAAQKELNAADEELNRIQAAL 114 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCTT-TTSSCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-------HHH
T ss_pred HhhHHHHHHHHHHHHHHHHhcccccccCCCccccccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 4445556666665555522221 1123677788888776 35678888888888888888888877
No 484
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=66.61 E-value=45 Score=26.17 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=10.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHH
Q 023704 203 IMEKNIISVAQQIERLQAELA 223 (278)
Q Consensus 203 ~meknl~~m~~e~eklrael~ 223 (278)
.++.-+.+..+|+|.|+.+|.
T Consensus 53 ~L~~e~~~l~~E~e~L~~~l~ 73 (87)
T PF12709_consen 53 ELENENKALKRENEQLKKKLD 73 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555543
No 485
>PRK09546 zntB zinc transporter; Reviewed
Probab=66.61 E-value=1.2e+02 Score=28.60 Aligned_cols=13 Identities=15% Similarity=0.381 Sum_probs=9.6
Q ss_pred CCccccCCC-CCCC
Q 023704 241 STSYAASYG-NPDP 253 (278)
Q Consensus 241 ~~~y~~~~g-n~~~ 253 (278)
.|-||||++ -|+.
T Consensus 281 aGiyGMNf~~mPel 294 (324)
T PRK09546 281 TGLFGVNLGGIPGG 294 (324)
T ss_pred HhhhccccCCCCCc
Confidence 578999996 5543
No 486
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=66.60 E-value=99 Score=33.81 Aligned_cols=33 Identities=15% Similarity=0.078 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHH
Q 023704 74 ALKQELSLAEQELRHLSSVAASVKAERDAEVRE 106 (278)
Q Consensus 74 ~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~ 106 (278)
.|.+...-.+.+.+.+..+..+.....+.++++
T Consensus 488 ~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~ 520 (913)
T KOG0244|consen 488 PLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSP 520 (913)
T ss_pred HHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcc
Confidence 333444444444555544444444444333333
No 487
>PRK11546 zraP zinc resistance protein; Provisional
Probab=66.53 E-value=31 Score=29.42 Aligned_cols=16 Identities=19% Similarity=0.356 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhhhhhh
Q 023704 172 EIETERQEIHKGRAAI 187 (278)
Q Consensus 172 EIe~LrqEl~~~raa~ 187 (278)
.|..|.+||..+|..+
T Consensus 90 kI~aL~kEI~~Lr~kL 105 (143)
T PRK11546 90 KINAVAKEMENLRQSL 105 (143)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555554433
No 488
>PRK11020 hypothetical protein; Provisional
Probab=66.52 E-value=61 Score=26.73 Aligned_cols=64 Identities=16% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 023704 74 ALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVI-KQEMIKDLNEI 152 (278)
Q Consensus 74 ~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~-rqeL~~evq~L 152 (278)
.+++||......|..+++.+.....-- - -..+..+..|+..+..+|..+... ..+|+.+-+.|
T Consensus 2 ~~K~Eiq~L~drLD~~~~Klaaa~~rg------d----------~~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~~~l 65 (118)
T PRK11020 2 VEKNEIKRLSDRLDAIRHKLAAASLRG------D----------AEKYAQFEKEKATLEAEIARLKEVQSQKLSKEAQKL 65 (118)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcC------C----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 023704 153 N 153 (278)
Q Consensus 153 e 153 (278)
.
T Consensus 66 ~ 66 (118)
T PRK11020 66 M 66 (118)
T ss_pred H
No 489
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=66.43 E-value=1.1e+02 Score=28.46 Aligned_cols=118 Identities=17% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 58 IQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEK 137 (278)
Q Consensus 58 Iq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~ 137 (278)
++..|.....+........+.|...+.++............+.+......-.....|+...+..+.-...|.+--..-..
T Consensus 178 L~~fl~~~~~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~~ 257 (297)
T PF02841_consen 178 LQEFLQSKESMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLKEKMEEERE 257 (297)
T ss_dssp HHHHHHHCHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh--hccHHHHHHHHHHHH
Q 023704 138 LCVIKQEMIKDLNEINGDLAKARDE--SKDMAAIKAEIETER 177 (278)
Q Consensus 138 l~~~rqeL~~evq~LekDL~~~~~d--~~kl~~LkaEIe~Lr 177 (278)
...++...-++.-.++-.++-.+ ..++..|+.||+.|+
T Consensus 258 --~~~~e~e~~l~~k~~eq~~~l~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 258 --QLLQEQERLLEQKLQEQEELLKEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 490
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=66.21 E-value=66 Score=25.70 Aligned_cols=105 Identities=16% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHH
Q 023704 46 HLEDRIAIQHS--DIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIES 123 (278)
Q Consensus 46 ~Le~~L~~q~~--eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~ 123 (278)
.|+.+...... .|...-.+.++.-.....=..+|......|..-.......-.+.+.....- ++..+.
T Consensus 2 li~kkre~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA----------~k~a~~ 71 (126)
T PF13863_consen 2 LIEKKREMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERA----------EKRAEE 71 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----------HHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023704 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (278)
Q Consensus 124 lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~ 160 (278)
-.....+...+|..|......|..++..++..+.++.
T Consensus 72 e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 72 EKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=65.85 E-value=21 Score=25.99 Aligned_cols=44 Identities=14% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023704 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARD 161 (278)
Q Consensus 118 lr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~ 161 (278)
+.....++.++.+++.++.++.....+|..+++.+..|-.....
T Consensus 16 ~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~ 59 (80)
T PF04977_consen 16 YSRYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEK 59 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
No 492
>KOG3856 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.81 E-value=16 Score=30.55 Aligned_cols=34 Identities=15% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023704 128 LDRVRADIEKLCVIKQEMIKDLNEINGDLAKARD 161 (278)
Q Consensus 128 l~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~ 161 (278)
..++++|+.++...|+++...+..|+++|..|..
T Consensus 12 ye~~kaEL~elikkrqe~eetl~nLe~qIY~~Eg 45 (135)
T KOG3856|consen 12 YEDTKAELAELIKKRQELEETLANLERQIYAFEG 45 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 493
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=65.81 E-value=1.2e+02 Score=28.71 Aligned_cols=128 Identities=20% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHhH----HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 70 ATHVALKQELSLAEQELRHLSSVAASVKAER----DAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEM 145 (278)
Q Consensus 70 ~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~----e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL 145 (278)
+++...+.-|...-+||+...+-...+..-- |+-.|+++-+-+.|+|--|.++-+..|- .|.+..|..
T Consensus 46 ~~~~q~~~~i~~k~~e~r~~r~lat~l~~~g~~i~e~ls~~~~~~~~~~~aa~Rplel~e~Ek--------vlk~aIq~i 117 (338)
T KOG3647|consen 46 DQRDQYRSLIGDKIEELRKARELATDLTQRGTTICEMLSKELLHKESLMSAAQRPLELLEVEK--------VLKSAIQAI 117 (338)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHcCCccHHHHHH--------HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHhH
Q 023704 146 IKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNI 208 (278)
Q Consensus 146 ~~evq~LekDL~~~~~d~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~q~meknl 208 (278)
..++++...-|+- -.+-..+|.+.|+.=|.|+.+.|.-|+-...-+.-++..-.--|+-|
T Consensus 118 ~~~~q~~~~~Lnn---vasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeL 177 (338)
T KOG3647|consen 118 QVRLQSSRAQLNN---VASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEEL 177 (338)
T ss_pred HHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
No 494
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=65.81 E-value=1.1e+02 Score=27.94 Aligned_cols=104 Identities=16% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHH
Q 023704 124 MHAELDRVRADIEKLCVIKQEMIKDLN-EINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQR 201 (278)
Q Consensus 124 lk~El~qlr~ei~~l~~~rqeL~~evq-~LekDL~~~~~d-~~kl~~LkaEIe~LrqEl~~~raa~e~ekk~~~e~~eq~ 201 (278)
++.=...++.+.+.+...-..|...+. .+.+.|..|..+ -.+.+.+...++.+.+........++--|+.+..-.-..
T Consensus 58 l~~sw~~~~~e~E~~a~~H~~la~~L~~ev~~~l~~f~~~~~k~~k~~e~~~~k~~K~~~~~~~~~~kaKk~y~~~cke~ 137 (233)
T cd07649 58 LGEAWAQVKKSLADEAEVHLKFSSKLQSEVEKPLLNFRENFKKDMKKLDHHIADLRKQLASRYAAVEKARKALLERQKDL 137 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHHHH-----HHHHHHHHHHHhHHh
Q 023704 202 EIMEKNIISVA-----QQIERLQAELANAEK 227 (278)
Q Consensus 202 q~meknl~~m~-----~e~eklrael~n~~~ 227 (278)
..-...+-.-- .+++|||.-+..++.
T Consensus 138 e~~~~~~~~~k~~~s~~~~~K~~~K~~Ka~~ 168 (233)
T cd07649 138 EGKTQQLEIKLSNKTEEDIKKARRKSTQAGD 168 (233)
T ss_pred HHHHHHHHhhcccCCHHHHHHHHHHHHHHHH
No 495
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=65.77 E-value=13 Score=36.23 Aligned_cols=108 Identities=11% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHH
Q 023704 101 DAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQE 179 (278)
Q Consensus 101 e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~LkaEIe~LrqE 179 (278)
|..++.+-.-....+.-++.+..++..+..++.+++.+.....+...++..+.+.+...... .+++.+++..|..+...
T Consensus 80 E~~~K~~~~~~e~~ek~~k~l~el~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~ 159 (370)
T PF02994_consen 80 ENIIKNLEVLKEEKEKSIKELNELKKRIKELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDR 159 (370)
T ss_dssp --------------------------------------H-------------------------HHHHHHHHHHHHHHHH
T ss_pred HhhhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q ss_pred HHhhhhhhhhhhhhchhhHHHHHHHHHhH
Q 023704 180 IHKGRAAIECEKKNRASNHEQREIMEKNI 208 (278)
Q Consensus 180 l~~~raa~e~ekk~~~e~~eq~q~meknl 208 (278)
+.....++....|-...+.+.+.-+|.+.
T Consensus 160 ~~~i~~~~~~~~k~i~~l~~kl~DlEnrs 188 (370)
T PF02994_consen 160 IEEIEQAIKELEKRIKKLEDKLDDLENRS 188 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhc
No 496
>PF14182 YgaB: YgaB-like protein
Probab=65.65 E-value=60 Score=25.02 Aligned_cols=62 Identities=18% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHH
Q 023704 103 EVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAI 169 (278)
Q Consensus 103 ~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d-~~kl~~L 169 (278)
+-..++|+.+.|-++|.+-..+..++..+..+..- ..+..+|.++.++|...+.- .++..++
T Consensus 8 eQm~tMD~LL~LQsElERCqeIE~eL~~l~~ea~l-----~~i~~EI~~mkk~Lk~Iq~~Fe~QTeeV 70 (79)
T PF14182_consen 8 EQMKTMDKLLFLQSELERCQEIEKELKELEREAEL-----HSIQEEISQMKKELKEIQRVFEKQTEEV 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=65.64 E-value=68 Score=25.61 Aligned_cols=71 Identities=13% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 61 LLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCV 140 (278)
Q Consensus 61 ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~ 140 (278)
.+..-......+..|.+.+.....-|+.++..+...|... ++.+++-++.++..
T Consensus 26 ~l~~~~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~--------------------------dv~~L~l~l~el~G 79 (106)
T PF10805_consen 26 WLRRTYAKREDIEKLEERLDEHDRRLQALETKLEHLPTRD--------------------------DVHDLQLELAELRG 79 (106)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--------------------------HHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023704 141 IKQEMIKDLNEINGDLA 157 (278)
Q Consensus 141 ~rqeL~~evq~LekDL~ 157 (278)
..+.+.++++.++.-+.
T Consensus 80 ~~~~l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 80 ELKELSARLQGVSHQLD 96 (106)
T ss_pred HHHHHHHHHHHHHHHHH
No 498
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=65.51 E-value=1e+02 Score=27.61 Aligned_cols=78 Identities=9% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 023704 50 RIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELD 129 (278)
Q Consensus 50 ~L~~q~~eIq~ll~dnqrla~~~~~L~qEL~laqhEL~~l~~~i~~~~ae~e~~~r~l~~k~~kleaelr~~e~lk~El~ 129 (278)
+|+.+..-+++++...+ ..++..+.||++...+-..+-..+ ...+.|..
T Consensus 109 ~LeAQka~~eR~ia~~~----------~ra~~LqaDl~~~~~Q~~~va~~Q---------------------~q~r~ea~ 157 (192)
T PF11180_consen 109 QLEAQKAQLERLIAESE----------ARANRLQADLQIARQQQQQVAARQ---------------------QQARQEAQ 157 (192)
T ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023704 130 RVRADIEKLCVIKQEMIKDLNEINGDLAK 158 (278)
Q Consensus 130 qlr~ei~~l~~~rqeL~~evq~LekDL~~ 158 (278)
.|+.+-..+......|..+|..|++..+.
T Consensus 158 aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~~ 186 (192)
T PF11180_consen 158 ALEAERRAAQAQLRQLQRQVRQLQRQANE 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 499
>COG1344 FlgL Flagellin and related hook-associated proteins [Cell motility and secretion]
Probab=65.23 E-value=74 Score=30.55 Aligned_cols=76 Identities=21% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hccHHHHHHHHHHHHHHHHhh
Q 023704 108 YEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE---SKDMAAIKAEIETERQEIHKG 183 (278)
Q Consensus 108 ~~k~~kleaelr~~e~lk~El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d---~~kl~~LkaEIe~LrqEl~~~ 183 (278)
+..+.+|..+++.+.....-+.....-++.......+...-++++..-+-....+ ......+..||+.|+.||.+.
T Consensus 46 ~~is~~l~~~~~~L~q~~~n~~~g~s~lqtae~aL~~~~~~lqrirelavqaan~t~s~~dr~~iq~Ei~~l~~el~~i 124 (360)
T COG1344 46 LAIALRLRSQIRGLSQAKDNAQDGISKLQTAEGALSEISKILQRIKELAVQAANGTLSDADRAAIQKEIEQLLDELDNI 124 (360)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHH
No 500
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=65.08 E-value=25 Score=25.60 Aligned_cols=43 Identities=12% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHH
Q 023704 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAI 169 (278)
Q Consensus 127 El~qlr~ei~~l~~~rqeL~~evq~LekDL~~~~~d~~kl~~L 169 (278)
.+.+++.++..+.....++..+...|++++..++.|..-+..+
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~ 60 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKV 60 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Done!