BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023705
(278 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O13657|YBCC_SCHPO Putative metal ion transporter C27B12.12c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pi066 PE=1 SV=1
Length = 803
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 5 ATSSFSSLQFLPRPKIPQPPFSSPSLLLR-QRRTTYQFSSLVVSAQNDKKSTTTKEVKKK 63
AT S S+ P IP+PP+ S + L ++T QFS + Q KST + +
Sbjct: 280 ATKSCSAAVDCPHTTIPKPPYQSDTDLTELPTKSTAQFSDETFTVQPRLKSTHSSIADNE 339
Query: 64 AEEVEVEVEEELPWIQE 80
EV+ +V+E ++E
Sbjct: 340 DREVDSQVDENTRVVEE 356
>sp|Q819Y5|DPO3_BACCR DNA polymerase III PolC-type OS=Bacillus cereus (strain ATCC 14579 /
DSM 31) GN=polC PE=3 SV=1
Length = 1435
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 109 ILAVPLAYVGVSFVIAFVKTVKKFNSPKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPA 168
++AV +AY V F + F + F + + +A + IDE+ QKG DA P
Sbjct: 1272 LMAVRIAYFKVHFALLFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAA--PK 1329
Query: 169 LKGLVQKTGFSMEDVLRKY 187
K L+ ++E R Y
Sbjct: 1330 EKSLLTVLEMTLEMCERGY 1348
>sp|Q65MP7|GATB_BACLD Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580)
GN=gatB PE=3 SV=1
Length = 476
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 141 KLVNKNAMVCK----TIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKP 196
KL+ K + K EL +KGGDA KGLVQ S E LRK + AL+ P
Sbjct: 375 KLIEKGTISSKIAKKVFKELIEKGGDAEKIVKEKGLVQ---ISDEATLRKLVTEALDNNP 431
>sp|O30509|GATB_BACSU Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
OS=Bacillus subtilis (strain 168) GN=gatB PE=1 SV=2
Length = 476
Score = 32.0 bits (71), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 141 KLVNKNAMVCK----TIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKP 196
KL+ K + K EL +KGGDA KGLVQ S E VL K + AL+ P
Sbjct: 375 KLIEKGTISSKIAKKVFKELIEKGGDAEKIVKEKGLVQ---ISDEGVLLKLVTEALDNNP 431
>sp|Q17X64|LPXK_HELAH Tetraacyldisaccharide 4'-kinase OS=Helicobacter acinonychis (strain
Sheeba) GN=lpxK PE=3 SV=1
Length = 312
Score = 32.0 bits (71), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 8 SFSSLQFLPRPKIP-QPPFSSPSLLLRQRRTTYQFSSLVVSAQNDKKSTTT 57
+F+ L +PK+P PF PS L R+ +Y+ + LV++ D K T+
Sbjct: 156 NFNQFNLLLKPKVPPYYPFCLPSGLYRESIKSYKEAHLVITEDKDYKRITS 206
>sp|Q74H94|MNME_LACJO tRNA modification GTPase MnmE OS=Lactobacillus johnsonii (strain
CNCM I-12250 / La1 / NCC 533) GN=mnmE PE=3 SV=1
Length = 461
Score = 31.6 bits (70), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 51 DKKSTTTKEVKKKAEEVEVEVEEELPWIQEKALDLVEFTGSVTQAIPG-PRVGQSKL 106
D T++E+KKKAEEV ++++ L QE + + AI G P VG+S L
Sbjct: 188 DMDDLTSQEMKKKAEEVSKQIDQLLKTAQEGKI----IRNGLATAIVGRPNVGKSSL 240
>sp|A7Z268|GATB_BACA2 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
OS=Bacillus amyloliquefaciens (strain FZB42) GN=gatB
PE=3 SV=1
Length = 476
Score = 31.6 bits (70), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 141 KLVNKNAMVCK----TIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKP 196
KL+ K + K EL +KGGDA KGLVQ S E VL K + AL+ P
Sbjct: 375 KLIEKGTISSKIAKKVFKELIEKGGDAEKIVKEKGLVQ---ISDESVLLKLVTDALDSNP 431
>sp|P39475|DHE4_SULSH NADP-specific glutamate dehydrogenase (Fragment) OS=Sulfolobus
shibatae GN=gdhA PE=3 SV=1
Length = 390
Score = 31.2 bits (69), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 21/118 (17%)
Query: 81 KALDLVEFTGSVTQAIPGPRVGQSKL---PWILAVPLAYVGVSFVIAFVKTVKKFNSPKF 137
KAL++V+ TGSV G +V +L + +P A V + KFN+PK
Sbjct: 232 KALEVVQSTGSVVNYPEGKKVTNEELLTSDCDILIPAAVENV---------INKFNAPKV 282
Query: 138 KRKKLV-NKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNE 194
K K +V N + DE+ ++ G V P L + V+ Y+ +A N+
Sbjct: 283 KAKLIVEGANGPLAADADEIIKQRGIVVIPDILA--------NAGGVVGSYVEWANNK 332
>sp|B0K5I0|PURA_THEPX Adenylosuccinate synthetase OS=Thermoanaerobacter sp. (strain X514)
GN=purA PE=3 SV=1
Length = 426
Score = 31.2 bits (69), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 169 LKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKAS 212
K L GF E++ +KY+ YA KPF D V L L K+
Sbjct: 171 FKELYGAEGFDFEEMYQKYLEYAEKIKPFVTDTTVLLYDLIKSG 214
>sp|B0K8D7|PURA_THEP3 Adenylosuccinate synthetase OS=Thermoanaerobacter pseudethanolicus
(strain ATCC 33223 / 39E) GN=purA PE=3 SV=1
Length = 426
Score = 31.2 bits (69), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 169 LKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKAS 212
K L GF E++ +KY+ YA KPF D V L L K+
Sbjct: 171 FKELYGAEGFDFEEMYQKYLEYAEKIKPFVTDTTVLLYDLIKSG 214
>sp|Q6MBF0|TIG_PARUW Trigger factor OS=Protochlamydia amoebophila (strain UWE25) GN=tig
PE=3 SV=1
Length = 435
Score = 31.2 bits (69), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 25/141 (17%)
Query: 77 WIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFNSPK 136
WIQEK + L G+ + + P K P + V F + VKT+ + N P
Sbjct: 216 WIQEKVIGL--NAGASAEGMTQPN---EKFP-----DPDFKSVPFRVT-VKTIWQGNMPA 264
Query: 137 FKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMED-VLRKYIRYALNEK 195
+L K + +T+DEL+QK + + A + + ++ +ED ++ KY
Sbjct: 265 ID-DELAKKVGL--QTVDELYQKLNERLEQEAQEDIYKQHIHHLEDQLIEKY-------- 313
Query: 196 PFNPDLVVNLIQLRKASMLDD 216
PF DL ++ I+ K + LDD
Sbjct: 314 PF--DLPLSYIESNKQARLDD 332
>sp|Q040F3|MNME_LACGA tRNA modification GTPase MnmE OS=Lactobacillus gasseri (strain ATCC
33323 / DSM 20243) GN=mnmE PE=3 SV=1
Length = 461
Score = 31.2 bits (69), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 51 DKKSTTTKEVKKKAEEVEVEVEEELPWIQEKALDLVEFTGSVTQAIPG-PRVGQSKL 106
D T++E+KKKA+EV ++E+ L QE + + AI G P VG+S L
Sbjct: 188 DMDDLTSQEMKKKAQEVSKQIEQLLQTAQEGKI----IRNGLATAIVGRPNVGKSSL 240
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,821,761
Number of Sequences: 539616
Number of extensions: 4152544
Number of successful extensions: 16281
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 16267
Number of HSP's gapped (non-prelim): 39
length of query: 278
length of database: 191,569,459
effective HSP length: 116
effective length of query: 162
effective length of database: 128,974,003
effective search space: 20893788486
effective search space used: 20893788486
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)