Query 023705
Match_columns 278
No_of_seqs 20 out of 22
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 11:23:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023705.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023705hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aq3_A Apoptosis regulator BCL 89.0 0.18 6.3E-06 42.1 2.3 67 175-241 9-77 (169)
2 3sp7_A BCL-2-like protein 1; a 83.4 1.2 4.1E-05 37.2 4.4 64 177-242 5-72 (172)
3 3ilc_A BCL-2-like protein 1; a 82.4 0.55 1.9E-05 40.8 2.1 62 179-242 5-110 (197)
4 2a19_A EIF-2- alpha, eukaryoti 81.1 1.9 6.5E-05 35.8 4.8 65 165-229 107-174 (175)
5 2w3l_A BCL2-XL, apoptosis regu 77.5 2.4 8.3E-05 33.6 4.2 46 178-234 1-46 (144)
6 2kua_A BCL-2-like protein 10; 76.6 2.3 7.8E-05 35.5 3.9 64 180-256 17-91 (170)
7 3mva_O Transcription terminati 75.1 4 0.00014 35.8 5.3 53 166-223 20-72 (343)
8 1y14_A B32, RPB4, DNA-directed 71.9 8.2 0.00028 33.5 6.3 58 167-224 90-148 (187)
9 2xa0_A BCL-2, apoptosis regula 66.8 3.9 0.00013 35.4 3.3 24 175-198 6-29 (207)
10 2nsz_A Programmed cell death p 65.2 11 0.00037 29.4 5.2 77 150-228 11-89 (129)
11 2k9i_A Plasmid PRN1, complete 63.8 6.6 0.00023 25.4 3.2 27 168-194 23-49 (55)
12 2l2e_A Calcium-binding protein 62.6 25 0.00084 26.1 6.6 47 161-207 5-53 (190)
13 1s1e_A KV channel interacting 62.1 22 0.00075 28.3 6.6 39 153-191 23-61 (224)
14 1r2d_A Apoptosis regulator BCL 62.0 6.6 0.00022 34.4 3.8 37 216-252 83-134 (218)
15 2cpg_A REPA protein, transcrip 60.9 11 0.00038 23.6 3.8 27 168-194 16-42 (45)
16 2d8n_A Recoverin; structural g 60.5 30 0.001 26.2 6.9 62 163-224 15-78 (207)
17 3kw6_A 26S protease regulatory 59.8 13 0.00045 25.8 4.4 51 181-236 9-59 (78)
18 2fji_1 Exocyst complex compone 59.6 33 0.0011 30.8 8.0 80 150-234 283-373 (399)
19 2ion_A PDCD4, programmed cell 55.6 17 0.00057 29.4 4.9 87 150-242 13-101 (152)
20 2rg8_A Programmed cell death p 55.1 8.7 0.0003 31.4 3.2 78 149-229 13-91 (165)
21 2c35_A Human RPB4, DNA-directe 53.2 23 0.0008 28.9 5.5 47 178-224 65-112 (152)
22 1g8i_A Frequenin, neuronal cal 52.7 51 0.0017 24.3 6.9 45 162-206 6-52 (190)
23 3rpp_A Glutathione S-transfera 52.3 29 0.00099 28.6 6.0 94 148-266 117-215 (234)
24 3h87_C Putative uncharacterize 51.3 8.3 0.00028 29.1 2.3 51 166-220 14-68 (73)
25 2krk_A 26S protease regulatory 50.4 15 0.00051 26.7 3.5 51 181-236 17-67 (86)
26 1u78_A TC3 transposase, transp 50.1 58 0.002 23.5 6.7 68 169-236 25-105 (141)
27 3u5i_q A0, L10E, 60S acidic ri 49.0 3.6 0.00012 37.3 0.0 12 65-76 296-307 (312)
28 2xio_A Putative deoxyribonucle 48.2 13 0.00044 31.5 3.3 21 212-232 271-291 (301)
29 3iz5_s 60S acidic ribosomal pr 48.1 3.8 0.00013 37.3 0.0 13 64-76 302-314 (319)
30 1fpw_A Yeast frequenin, calciu 47.9 58 0.002 24.0 6.5 28 163-190 7-34 (190)
31 2jul_A Calsenilin; EF-hand, ca 47.9 47 0.0016 26.8 6.4 36 155-190 65-100 (256)
32 3m66_A Mterf3, mterf domain-co 47.8 47 0.0016 27.7 6.7 54 167-224 113-170 (270)
33 1ngr_A P75 low affinity neurot 47.3 28 0.00094 25.7 4.6 60 149-228 15-75 (85)
34 1s6c_A KV4 potassium channel-i 47.1 50 0.0017 24.2 6.0 14 164-177 36-49 (183)
35 1yz7_A Probable translation in 47.0 21 0.00072 30.4 4.4 60 167-229 18-82 (188)
36 1q06_A Transcriptional regulat 46.9 66 0.0022 24.9 6.9 15 195-209 56-70 (135)
37 2y6w_A BCL-2-like protein 2; a 46.3 14 0.0005 30.5 3.3 24 174-197 17-40 (177)
38 3bos_A Putative DNA replicatio 46.3 83 0.0028 23.8 7.3 60 148-207 178-241 (242)
39 3erp_A Putative oxidoreductase 46.0 59 0.002 28.5 7.2 52 168-222 286-345 (353)
40 2ahq_A Sigma-54, RNA polymeras 45.9 3.9 0.00013 30.6 -0.2 23 214-236 38-64 (76)
41 1bjf_A Neurocalcin delta; calc 44.9 53 0.0018 24.3 5.9 30 162-191 6-35 (193)
42 3pt3_A E3 ubiquitin-protein li 44.9 11 0.00036 30.0 2.1 21 177-197 95-115 (118)
43 1o0l_A Apoptosis regulator BCL 43.6 14 0.00049 30.7 2.8 53 178-237 13-65 (188)
44 3aji_B S6C, proteasome (prosom 43.5 31 0.001 24.0 4.2 51 181-236 7-57 (83)
45 4h6x_A Thiazoline oxidase/subt 43.3 21 0.00071 31.4 3.9 43 212-254 296-345 (357)
46 3o9x_A Uncharacterized HTH-typ 43.3 17 0.00057 27.1 2.9 41 195-239 69-111 (133)
47 3c1d_A Protein ORAA, regulator 42.9 49 0.0017 26.3 5.7 63 176-240 18-86 (159)
48 3ayh_A DNA-directed RNA polyme 42.3 39 0.0013 26.9 5.1 46 180-225 52-100 (136)
49 3fmy_A HTH-type transcriptiona 41.5 20 0.00069 24.3 2.9 58 192-253 6-66 (73)
50 1tc3_C Protein (TC3 transposas 41.0 52 0.0018 19.1 5.2 29 195-224 4-32 (51)
51 2l02_A Uncharacterized protein 40.2 9.9 0.00034 29.3 1.2 36 188-228 13-48 (82)
52 3dfg_A Xcrecx, regulatory prot 39.5 57 0.0019 26.1 5.7 67 168-242 23-90 (162)
53 3vlf_B 26S protease regulatory 39.3 45 0.0016 23.9 4.6 52 181-237 7-58 (88)
54 3n6q_A YGHZ aldo-keto reductas 39.2 66 0.0023 27.8 6.4 57 168-228 269-333 (346)
55 1lva_A Selenocysteine-specific 37.6 48 0.0016 28.1 5.2 77 149-229 142-231 (258)
56 1p94_A Plasmid partition prote 37.4 32 0.0011 25.5 3.6 30 166-195 46-75 (76)
57 2yfv_C SCM3, KLLA0F05115P; cel 36.9 17 0.0006 27.1 2.1 25 213-237 17-48 (63)
58 3qq6_A HTH-type transcriptiona 36.8 31 0.0011 23.6 3.2 29 196-224 6-34 (78)
59 2a5y_A Apoptosis regulator CED 36.1 40 0.0014 29.0 4.5 62 174-242 27-88 (204)
60 1x57_A Endothelial differentia 35.4 38 0.0013 23.2 3.6 24 200-223 13-36 (91)
61 3h0g_D DNA-directed RNA polyme 35.3 66 0.0023 25.9 5.4 47 177-224 48-95 (135)
62 3v0s_A Perakine reductase; AKR 34.5 1E+02 0.0035 26.7 6.9 52 167-222 246-305 (337)
63 3gpv_A Transcriptional regulat 34.4 1.1E+02 0.0036 24.1 6.4 11 213-223 73-83 (148)
64 3u5c_N S27A, YS15, 40S ribosom 34.4 40 0.0014 28.6 4.1 30 197-226 28-57 (151)
65 1jko_C HIN recombinase, DNA-in 34.3 16 0.00054 22.0 1.3 29 195-224 4-32 (52)
66 3j20_Q 30S ribosomal protein S 34.1 40 0.0014 28.7 4.1 29 197-225 28-56 (158)
67 3ln3_A Dihydrodiol dehydrogena 33.9 68 0.0023 27.5 5.6 54 165-222 238-297 (324)
68 2xzm_O RPS13E; ribosome, trans 33.9 43 0.0015 28.5 4.3 31 196-226 29-59 (153)
69 3kz3_A Repressor protein CI; f 33.4 1.1E+02 0.0037 20.5 6.1 49 170-225 29-77 (80)
70 3m66_A Mterf3, mterf domain-co 33.1 50 0.0017 27.5 4.6 13 211-223 85-97 (270)
71 1ohu_A Apoptosis regulator CED 32.7 43 0.0015 27.9 4.1 56 178-240 11-66 (175)
72 3gp4_A Transcriptional regulat 32.2 1E+02 0.0035 24.2 6.0 9 175-183 57-65 (142)
73 1jr3_D DNA polymerase III, del 32.2 63 0.0022 27.2 5.1 62 146-208 144-208 (343)
74 2gzx_A Putative TATD related D 32.1 68 0.0023 25.4 5.0 34 199-232 220-254 (265)
75 2vof_A BCL-2-related protein A 32.1 57 0.0019 26.2 4.6 17 181-197 15-31 (157)
76 4hv0_A AVTR; ribbon-helix-heli 31.4 47 0.0016 26.9 3.9 28 166-193 10-37 (106)
77 3n2t_A Putative oxidoreductase 31.3 54 0.0018 28.7 4.6 59 167-231 267-333 (348)
78 1us0_A Aldose reductase; oxido 31.1 72 0.0025 27.3 5.3 55 164-222 229-289 (316)
79 3eau_A Voltage-gated potassium 31.0 1.1E+02 0.0039 26.0 6.5 53 167-222 256-317 (327)
80 2ofy_A Putative XRE-family tra 30.8 91 0.0031 20.9 4.8 58 151-219 15-74 (86)
81 1uxc_A FRUR (1-57), fructose r 30.8 1E+02 0.0036 21.4 5.2 51 169-224 3-57 (65)
82 3fwt_A Macrophage migration in 30.5 5.7 0.0002 31.1 -1.5 56 208-265 26-85 (133)
83 2dmn_A Homeobox protein TGIF2L 30.2 46 0.0016 23.9 3.4 46 138-183 7-54 (83)
84 3h0g_D DNA-directed RNA polyme 30.0 55 0.0019 26.4 4.1 76 143-228 49-129 (135)
85 3o3r_A Aldo-keto reductase fam 30.0 77 0.0026 27.1 5.3 55 164-222 229-289 (316)
86 3izc_t 60S acidic ribosomal pr 30.0 11 0.00038 29.7 0.0 11 66-76 91-101 (106)
87 4h6w_A N-terminal cyanobactin 29.8 36 0.0012 28.5 3.1 55 201-255 233-296 (306)
88 3h0l_B Aspartyl/glutamyl-tRNA( 29.8 64 0.0022 31.2 5.2 62 192-253 362-433 (478)
89 1xwy_A DNAse TATD, deoxyribonu 29.6 60 0.002 26.1 4.3 23 210-232 239-261 (264)
90 3f2g_A Alkylmercury lyase; MER 29.6 48 0.0016 29.0 4.0 52 181-238 21-72 (220)
91 1ug3_A EIF4GI, eukaryotic prot 29.0 45 0.0015 29.4 3.7 76 150-227 15-91 (339)
92 1r69_A Repressor protein CI; g 29.0 1.1E+02 0.0038 19.2 5.7 48 169-219 6-59 (69)
93 1vma_A Cell division protein F 29.0 1.7E+02 0.0058 25.5 7.4 46 186-235 49-95 (306)
94 1jr3_A DNA polymerase III subu 28.9 2.4E+02 0.0083 23.2 8.1 57 148-206 182-241 (373)
95 3e3v_A Regulatory protein RECX 28.7 1.2E+02 0.0042 24.5 6.1 95 131-236 31-132 (177)
96 2c35_A Human RPB4, DNA-directe 28.6 60 0.002 26.5 4.2 53 174-234 98-150 (152)
97 1paq_A Translation initiation 28.6 1.1E+02 0.0039 25.0 5.9 26 225-250 86-121 (189)
98 3ij6_A Uncharacterized metal-d 28.4 42 0.0014 28.8 3.4 23 211-233 283-305 (312)
99 3cw2_C Translation initiation 28.1 1.8E+02 0.0062 25.3 7.4 66 165-231 103-173 (266)
100 1pyf_A IOLS protein; beta-alph 27.8 96 0.0033 26.3 5.5 52 167-222 246-305 (312)
101 2jml_A DNA binding domain/tran 27.7 21 0.00072 25.1 1.1 58 169-227 8-78 (81)
102 3up8_A Putative 2,5-diketo-D-g 27.7 85 0.0029 27.2 5.2 52 167-222 218-276 (298)
103 3d5l_A Regulatory protein RECX 27.5 91 0.0031 26.1 5.2 83 153-242 35-135 (221)
104 3r20_A Cytidylate kinase; stru 27.5 1.3E+02 0.0045 25.4 6.3 84 167-251 24-145 (233)
105 3izc_v 60S acidic ribosomal pr 27.5 13 0.00044 29.3 0.0 11 66-76 91-101 (106)
106 3t76_A VANU, transcriptional r 27.4 1E+02 0.0036 22.2 4.9 52 165-219 25-82 (88)
107 1j6o_A TATD-related deoxyribon 27.3 48 0.0016 27.2 3.4 23 210-232 242-264 (268)
108 3eus_A DNA-binding protein; st 27.1 1.5E+02 0.0052 20.3 7.3 35 190-228 47-81 (86)
109 2da1_A Alpha-fetoprotein enhan 26.8 56 0.0019 22.3 3.2 40 143-183 12-51 (70)
110 3b7h_A Prophage LP1 protein 11 26.5 1E+02 0.0035 19.9 4.4 12 206-217 54-65 (78)
111 2zc2_A DNAD-like replication p 26.3 1.2E+02 0.0042 21.0 5.0 60 168-227 6-66 (78)
112 1x2n_A Homeobox protein pknox1 26.2 65 0.0022 22.1 3.5 40 144-183 13-54 (73)
113 3al0_B Aspartyl/glutamyl-tRNA( 26.2 69 0.0024 31.0 4.8 49 194-242 368-422 (482)
114 3f7j_A YVGN protein; aldo-keto 26.1 76 0.0026 26.8 4.5 55 164-222 198-258 (276)
115 2ckz_A DNA-directed RNA polyme 25.8 25 0.00087 29.2 1.5 48 181-228 56-129 (161)
116 3eiq_C Programmed cell death p 25.7 1.2E+02 0.004 27.9 6.0 76 149-226 220-297 (358)
117 1ais_B TFB TFIIB, protein (tra 25.5 1.5E+02 0.0052 23.4 6.0 66 166-233 69-139 (200)
118 1qzm_A ATP-dependent protease 25.5 1.2E+02 0.0039 23.3 5.0 74 176-250 1-90 (94)
119 1xkp_A Putative membrane-bound 25.4 1.9E+02 0.0063 25.4 7.0 65 147-216 50-119 (246)
120 2b5a_A C.BCLI; helix-turn-heli 25.2 1.3E+02 0.0043 19.4 4.6 17 203-219 53-69 (77)
121 2o8x_A Probable RNA polymerase 25.2 53 0.0018 21.2 2.7 25 200-224 18-42 (70)
122 3ezq_A Tumor necrosis factor r 25.1 33 0.0011 27.5 1.9 74 152-230 6-95 (115)
123 2wiu_B HTH-type transcriptiona 25.1 69 0.0023 21.4 3.3 20 205-224 17-36 (88)
124 2chq_A Replication factor C sm 25.1 2.6E+02 0.0089 22.2 9.0 59 148-206 165-223 (319)
125 3rgc_A Possible periplasmic pr 24.9 2.2E+02 0.0077 23.2 7.0 39 148-189 56-94 (252)
126 2ppx_A AGR_C_3184P, uncharacte 24.9 39 0.0013 23.9 2.2 36 204-240 34-71 (99)
127 1ng6_A Hypothetical protein YQ 24.8 2.1E+02 0.0071 22.8 6.7 44 193-242 41-98 (148)
128 4gac_A Alcohol dehydrogenase [ 24.8 79 0.0027 26.7 4.4 59 164-227 228-292 (324)
129 3g46_A Globin-1; oxygen transp 24.8 1.1E+02 0.0039 23.2 5.0 56 148-203 72-133 (146)
130 2l01_A Uncharacterized protein 24.7 40 0.0014 25.7 2.2 36 188-228 15-51 (77)
131 1zzm_A Putative deoxyribonucle 24.6 47 0.0016 26.6 2.8 23 210-232 235-257 (259)
132 1vp5_A 2,5-diketo-D-gluconic a 24.6 90 0.0031 27.0 4.8 54 165-222 212-271 (298)
133 1mzr_A 2,5-diketo-D-gluconate 24.6 69 0.0023 27.8 4.0 56 163-222 217-278 (296)
134 1y7y_A C.AHDI; helix-turn-heli 24.5 1.4E+02 0.0048 18.9 5.8 41 170-218 30-71 (74)
135 1mi3_A Xylose reductase, XR; a 24.3 87 0.003 26.8 4.6 55 164-222 240-300 (322)
136 3b3e_A YVGN protein; aldo-keto 24.1 83 0.0028 27.4 4.5 55 164-222 232-292 (310)
137 3dd4_A KV channel-interacting 24.1 1.2E+02 0.0041 24.0 5.1 61 121-191 14-74 (229)
138 2da2_A Alpha-fetoprotein enhan 24.0 68 0.0023 21.8 3.2 39 144-183 13-51 (70)
139 1p4w_A RCSB; solution structur 23.9 87 0.003 23.2 4.0 40 194-235 32-78 (99)
140 1vbj_A Prostaglandin F synthas 23.8 99 0.0034 26.3 4.8 55 164-222 201-261 (281)
141 1akh_A Protein (mating-type pr 23.7 1.2E+02 0.0043 19.8 4.4 38 145-183 12-49 (61)
142 3iz5_t 60S acidic ribosomal pr 23.7 17 0.00057 28.9 0.0 12 66-77 95-106 (110)
143 3hug_A RNA polymerase sigma fa 23.5 55 0.0019 23.0 2.7 37 185-224 28-64 (92)
144 3nrk_A LIC12922; NC domain, pa 23.5 96 0.0033 26.8 4.7 81 137-229 71-155 (325)
145 1ssq_A SAT, serine acetyltrans 23.5 13 0.00044 32.7 -0.7 70 181-254 20-90 (267)
146 3lut_A Voltage-gated potassium 23.4 1.5E+02 0.0053 25.9 6.1 53 167-222 290-351 (367)
147 2wzm_A Aldo-keto reductase; ox 23.4 98 0.0034 26.4 4.7 55 164-222 204-264 (283)
148 3f6w_A XRE-family like protein 23.3 1.7E+02 0.0057 19.3 6.9 44 171-222 32-76 (83)
149 1iqp_A RFCS; clamp loader, ext 23.1 1.4E+02 0.0049 23.9 5.4 35 213-249 284-318 (327)
150 2zu6_B Programmed cell death p 23.0 1E+02 0.0035 27.4 5.0 82 147-230 167-250 (307)
151 2xi8_A Putative transcription 22.9 1.4E+02 0.0048 18.4 6.0 30 187-219 30-60 (66)
152 4afx_A Protein Z dependent pro 22.9 16 0.00055 33.1 -0.3 45 73-118 42-94 (387)
153 3h7u_A Aldo-keto reductase; st 22.8 90 0.0031 27.2 4.5 56 163-222 241-302 (335)
154 1nk2_P Homeobox protein VND; h 22.8 74 0.0025 22.2 3.3 48 135-183 6-53 (77)
155 1qwk_A Aldose reductase, aldo- 22.8 1.1E+02 0.0039 26.1 5.0 53 166-222 231-289 (317)
156 1zug_A Phage 434 CRO protein; 22.8 1.5E+02 0.0051 18.6 5.5 30 187-219 32-61 (71)
157 2x48_A CAG38821; archeal virus 22.3 82 0.0028 19.8 3.1 30 199-230 18-47 (55)
158 3i4o_A Translation initiation 22.2 17 0.00057 27.4 -0.3 19 82-100 10-28 (79)
159 1u78_A TC3 transposase, transp 22.2 66 0.0023 23.1 3.0 25 175-207 20-44 (141)
160 2dzn_B 26S protease regulatory 22.0 35 0.0012 24.0 1.4 50 181-235 4-53 (82)
161 2dmu_A Homeobox protein goosec 22.0 90 0.0031 21.3 3.5 38 145-183 14-51 (70)
162 3mop_A Myeloid differentiation 21.9 2.7E+02 0.0092 21.6 6.6 72 146-228 8-80 (110)
163 2cra_A Homeobox protein HOX-B1 21.9 79 0.0027 21.6 3.2 38 145-183 14-51 (70)
164 2efv_A Hypothetical protein MJ 21.8 56 0.0019 25.8 2.6 39 188-235 26-72 (92)
165 3hi2_B Motility quorum-sensing 21.7 61 0.0021 25.7 2.9 33 151-184 14-46 (101)
166 3hou_D DNA-directed RNA polyme 21.6 2.2E+02 0.0076 25.4 6.8 56 168-223 125-181 (221)
167 2dmq_A LIM/homeobox protein LH 21.6 79 0.0027 22.0 3.2 37 146-183 15-51 (80)
168 1lqa_A TAS protein; TIM barrel 21.6 2.1E+02 0.0073 24.3 6.5 56 168-228 276-339 (346)
169 2chq_A Replication factor C sm 21.5 2.6E+02 0.0088 22.3 6.6 34 213-248 276-309 (319)
170 3ulq_B Transcriptional regulat 21.5 1.1E+02 0.0037 22.1 4.0 31 204-235 36-73 (90)
171 3gtx_A Organophosphorus hydrol 21.5 65 0.0022 28.6 3.3 41 189-232 299-339 (339)
172 3trb_A Virulence-associated pr 21.5 64 0.0022 23.9 2.8 54 161-217 9-71 (104)
173 2dak_A Ubiquitin carboxyl-term 21.4 1.1E+02 0.0036 21.3 3.8 39 197-250 8-46 (63)
174 2r5y_A Homeotic protein sex co 21.3 1.6E+02 0.0055 21.0 4.9 44 139-183 29-72 (88)
175 2jpc_A SSRB; DNA binding prote 21.3 42 0.0014 21.4 1.6 20 204-224 5-24 (61)
176 2da3_A Alpha-fetoprotein enhan 21.2 78 0.0027 21.9 3.1 37 146-183 25-61 (80)
177 3b3d_A YTBE protein, putative 21.2 1.3E+02 0.0044 26.0 5.1 59 164-227 236-300 (314)
178 3pao_A Adenosine deaminase; st 21.2 4.3E+02 0.015 23.3 9.0 25 211-235 106-130 (326)
179 2f6k_A Metal-dependent hydrola 21.1 1.1E+02 0.0036 24.9 4.3 21 212-232 286-306 (307)
180 3bs3_A Putative DNA-binding pr 21.0 1.7E+02 0.0059 18.7 6.0 42 170-219 27-69 (76)
181 2ewt_A BLDD, putative DNA-bind 20.9 1.3E+02 0.0045 19.1 4.0 8 213-220 21-28 (71)
182 3buv_A 3-OXO-5-beta-steroid 4- 20.8 1.2E+02 0.004 26.2 4.7 54 165-222 240-299 (326)
183 2djn_A Homeobox protein DLX-5; 20.8 84 0.0029 21.5 3.1 38 145-183 14-51 (70)
184 2wzn_A TET3, 354AA long hypoth 20.8 69 0.0024 24.8 3.0 43 197-239 10-57 (354)
185 1ku3_A Sigma factor SIGA; heli 20.6 71 0.0024 21.4 2.7 23 202-224 15-41 (73)
186 1s8n_A Putative antiterminator 20.5 1.9E+02 0.0066 21.7 5.4 36 172-208 162-197 (205)
187 2y1h_A Putative deoxyribonucle 20.5 1.2E+02 0.0042 24.4 4.5 24 210-233 242-265 (272)
188 4gie_A Prostaglandin F synthas 20.3 1.4E+02 0.0046 25.5 5.0 58 165-227 209-272 (290)
189 3iz5_v 60S acidic ribosomal pr 20.3 22 0.00074 28.4 0.0 11 66-76 98-108 (113)
190 3l6d_A Putative oxidoreductase 20.2 67 0.0023 27.2 3.0 42 199-240 187-232 (306)
191 1pdn_C Protein (PRD paired); p 20.1 1.5E+02 0.0051 20.5 4.4 29 195-224 16-44 (128)
192 3t5s_A Gilaa.00834.A, macropha 20.1 44 0.0015 26.1 1.8 55 208-265 27-85 (135)
No 1
>4aq3_A Apoptosis regulator BCL-2, BCL-2-like protein 1; chimera; HET: 398; 2.40A {Homo sapiens} PDB: 1g5m_A 1gjh_A 1ysw_A* 2o21_A* 2o22_A*
Probab=89.03 E-value=0.18 Score=42.05 Aligned_cols=67 Identities=19% Similarity=0.317 Sum_probs=39.5
Q ss_pred HhCCChHHHHHHHHHHHhcCCCCChHHHHHHH--HHHhhcCCCcHHHHHHHHHHHHhhhhhcCcccccc
Q 023705 175 KTGFSMEDVLRKYIRYALNEKPFNPDLVVNLI--QLRKASMLDDSQVAEILNEISRRFVREKDEDALDE 241 (278)
Q Consensus 175 KTGFs~~EV~RKYirY~LnEr~F~pd~VaDLi--~Lrkas~L~D~evaEiLnE~srRiv~~~G~vmmn~ 241 (278)
.+||+.-+|+++||.|.|+.+-+.-....+=+ .-....+-..++|.+.|+.++.-+-++|....-|+
T Consensus 9 ~~~~~~r~lv~~yi~~kL~q~g~~~~~~~~~~~~~~~~~~~~~~~~v~~~Lr~igdele~~~~~~f~~~ 77 (169)
T 4aq3_A 9 RTGYDNREIVMKYIHYKLSQRGYEWDAGDDVEENRTEAPEGTESEVVHLALRQAGDDFSRRYRGDFAEM 77 (169)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCCCC-------------------CHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHcCCCcCcccccccccCCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 57999999999999999999976543222111 01112345677899999999988888887655444
No 2
>3sp7_A BCL-2-like protein 1; apoptosis regulator-inhibitor complex; HET: 03B; 1.40A {Homo sapiens} PDB: 2lp8_A* 2lpc_A 1ysg_A* 1ysi_A* 1ysn_A* 2o1y_A* 2yxj_A* 3pl7_A 3qkd_A* 1g5j_A 4ehr_A* 3spf_A* 2pon_B 3r85_A 2p1l_A 4a1u_A* 2yj1_A 2yq7_A 2yq6_A 3fdm_A ...
Probab=83.41 E-value=1.2 Score=37.22 Aligned_cols=64 Identities=16% Similarity=0.180 Sum_probs=44.3
Q ss_pred CCChHHHHHHHHHHHhcCCCCChHHHH--HHHHHHh--hcCCCcHHHHHHHHHHHHhhhhhcCccccccc
Q 023705 177 GFSMEDVLRKYIRYALNEKPFNPDLVV--NLIQLRK--ASMLDDSQVAEILNEISRRFVREKDEDALDEQ 242 (278)
Q Consensus 177 GFs~~EV~RKYirY~LnEr~F~pd~Va--DLi~Lrk--as~L~D~evaEiLnE~srRiv~~~G~vmmn~~ 242 (278)
+++.-|+.+.||.|.|.-+-|...... |. -+. ..+-.-++|...|+.++.-|-++|.+..-|+.
T Consensus 5 ~~~~r~lv~dyI~yrL~~~g~~~~~~~~~~~--~~~~~~~~~~~~~v~~~Lr~~gdelE~~~~~~f~~~~ 72 (172)
T 3sp7_A 5 SQSNRELVVDFLSYKLSQKGYSWSQFSDVEE--NRTEAPEGTESEAVKQALREAGDEFELRYRRAFSDLT 72 (172)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCCGGGTCC--------------CHHHHHHHHHHHHHHHHHHHGGGCSCHH
T ss_pred chhhhHHHHHHHHHHHhhCCCCCcccccccc--ccCCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 456689999999999999988764321 11 121 23345578999999999999999988766654
No 3
>3ilc_A BCL-2-like protein 1; apoptosis, BH3 domain, alternative splicing, cytoplasm, membrane, mitochondrion, transmembrane; 1.64A {Mus musculus} PDB: 3ihd_A 2bzw_A 1pq1_A 1pq0_A 3ihc_A 3iih_A 1af3_A 3ihf_A 3ilb_A 3iig_A 3ihe_A
Probab=82.44 E-value=0.55 Score=40.75 Aligned_cols=62 Identities=16% Similarity=0.225 Sum_probs=41.8
Q ss_pred ChHHHHHHHHHHHhcCCCCChHHHHH--------------------------------------------HHHHHhhcCC
Q 023705 179 SMEDVLRKYIRYALNEKPFNPDLVVN--------------------------------------------LIQLRKASML 214 (278)
Q Consensus 179 s~~EV~RKYirY~LnEr~F~pd~VaD--------------------------------------------Li~Lrkas~L 214 (278)
+--||+-|||.|+|-.|-+.-....| ...++..+.
T Consensus 5 ~~~~~v~~~~~~kls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 83 (197)
T 3ilc_A 5 SNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEETEAERETPSAINGNPSWHLADSPAVNGATGHSSSLDAREVIP- 83 (197)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCTTCC-----------------------------------------------------C-
T ss_pred chHHHHHHHHHHHhhcCCCCccccCccccccccccccccccccccccccCCcccCCCCCCCCCCCCCCCCCCCCCCCCc-
Confidence 44699999999999888776533332 112222222
Q ss_pred CcHHHHHHHHHHHHhhhhhcCccccccc
Q 023705 215 DDSQVAEILNEISRRFVREKDEDALDEQ 242 (278)
Q Consensus 215 ~D~evaEiLnE~srRiv~~~G~vmmn~~ 242 (278)
-++|+..|++++.-+-++|.+..-|+.
T Consensus 84 -~~~V~~~Lr~lGdElE~~~~~~F~~m~ 110 (197)
T 3ilc_A 84 -MAAVKQALREAGDEFELRARRAFSDLT 110 (197)
T ss_dssp -HHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_pred -hHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 358999999999999999988776654
No 4
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=81.06 E-value=1.9 Score=35.77 Aligned_cols=65 Identities=9% Similarity=-0.001 Sum_probs=45.3
Q ss_pred CchHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChHHHHHHHH---HHhhcCCCcHHHHHHHHHHHHh
Q 023705 165 NPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQ---LRKASMLDDSQVAEILNEISRR 229 (278)
Q Consensus 165 ~~gvLk~L~~KTGFs~~EV~RKYirY~LnEr~F~pd~VaDLi~---Lrkas~L~D~evaEiLnE~srR 229 (278)
-.+.++.+..+.|++.+|+..+..|++.++-.=--++....+. .=..++++|++++++|.++++|
T Consensus 107 v~g~V~~i~~~~G~~~e~~~~~~~~~l~~~~g~~~~af~~a~~~~~~l~~~~~~~~~~~~~l~~~~~~ 174 (175)
T 2a19_A 107 VHSILRYCAEKFQIPLEELYKTIAWPLSRKFGHAYEAFKLSIIDETVWEGIEPPSKDVLDELKNYISK 174 (175)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHTHHHHHHHHSSHHHHHHHHHHCGGGGTTCCCSCHHHHHHHHHHHCC
T ss_pred ceEEEEEchhhcCCCHHHHHHHHHHHHHHHhCcHHHHHHHHhCChhhhhhcCCCcHHHHHHHHHHHhc
Confidence 3788899999999999999888888886553221333333331 1223566678999999998876
No 5
>2w3l_A BCL2-XL, apoptosis regulator BCL-2; HET: DRO; 2.10A {Homo sapiens} PDB: 2o2f_A*
Probab=77.51 E-value=2.4 Score=33.64 Aligned_cols=46 Identities=26% Similarity=0.470 Sum_probs=28.4
Q ss_pred CChHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhhc
Q 023705 178 FSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREK 234 (278)
Q Consensus 178 Fs~~EV~RKYirY~LnEr~F~pd~VaDLi~Lrkas~L~D~evaEiLnE~srRiv~~~ 234 (278)
++..++.+.||.|.|+++-+...... ..+++++.|+.++..+-++|
T Consensus 1 ~~~~~L~~dyi~~~l~~~g~~~~~~~-----------~p~~~~~~Lr~~gdele~~~ 46 (144)
T 2w3l_A 1 YDNREIVMKYIHYKLSQRGYEWDAGA-----------DSEVVHKTLREAGDDFSRRY 46 (144)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCCC--------------CHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHhCCCCCCCcCCC-----------cccHHHHHHHHHHHHHHHHh
Confidence 46779999999999998754311110 23456666666665555554
No 6
>2kua_A BCL-2-like protein 10; BOO, DIVA, apoptosis, BH3-only, membrane, mitochondri nucleus, transmembrane; NMR {Mus musculus}
Probab=76.55 E-value=2.3 Score=35.47 Aligned_cols=64 Identities=19% Similarity=0.147 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhhcCccccccc-----------hhhhhh
Q 023705 180 MEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKDEDALDEQ-----------PPMQAL 248 (278)
Q Consensus 180 ~~EV~RKYirY~LnEr~F~pd~VaDLi~Lrkas~L~D~evaEiLnE~srRiv~~~G~vmmn~~-----------~avqal 248 (278)
..++++.||.|.|.++-+.. .-..+.++++|+.++..|-++|-...=++. ..++.|
T Consensus 17 t~~L~~dYi~y~l~~~g~~~-------------~~~~s~~~~~Lr~v~~ele~~~~~~f~~~~~~~~~a~~~f~~Va~el 83 (170)
T 2kua_A 17 TRRLLSDYIFFCAREPDTPE-------------PPPTSVEAALLRSVTRQIQQEHQEFFSSFCESRGNRLELVKQMADKL 83 (170)
T ss_dssp HHHHHHHHHHHHHCCTTSCC-------------CCCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCCCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHH
Confidence 45799999999999864421 123346666666666655554442222211 445678
Q ss_pred cccCCccc
Q 023705 249 FVFDPVHN 256 (278)
Q Consensus 249 f~~~~~~~ 256 (278)
|..|...|
T Consensus 84 F~ddg~iN 91 (170)
T 2kua_A 84 LSKDQDFS 91 (170)
T ss_dssp CCSSSCCC
T ss_pred hccCCCCC
Confidence 87766555
No 7
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=75.10 E-value=4 Score=35.81 Aligned_cols=53 Identities=13% Similarity=0.133 Sum_probs=27.3
Q ss_pred chHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCcHHHHHHH
Q 023705 166 PPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEIL 223 (278)
Q Consensus 166 ~gvLk~L~~KTGFs~~EV~RKYirY~LnEr~F~pd~VaDLi~Lrkas~L~D~evaEiL 223 (278)
..++.-| ..+|++.+.+.+.+=+- +.+-+=++|.|.+++. ..|++++|++.|+
T Consensus 20 ~~~v~~L-~s~Gl~~~~~~~~~p~l-~~~s~~~~~~vl~fL~---~~G~s~~~i~~iv 72 (343)
T 3mva_O 20 EDLLKNL-LTMGVDIDMARKRQPGV-FHRMITNEQDLKMFLL---SKGASKEVIASII 72 (343)
T ss_dssp CCHHHHH-HHHTCCHHHHHHHCGGG-GGCSCCCHHHHHHHHH---HTTCCHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHhCchh-hccCcccHHHHHHHHH---HcCCCHHHHHHHH
Confidence 3444455 55666666655544332 3344445555554442 5666666666554
No 8
>1y14_A B32, RPB4, DNA-directed RNA polymerase II 32 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: a.60.8.2
Probab=71.93 E-value=8.2 Score=33.48 Aligned_cols=58 Identities=24% Similarity=0.281 Sum_probs=48.9
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHhhcCCCcHHHHHHHH
Q 023705 167 PALKGLVQKTGFSMEDVLRKYIRYALNEKPF-NPDLVVNLIQLRKASMLDDSQVAEILN 224 (278)
Q Consensus 167 gvLk~L~~KTGFs~~EV~RKYirY~LnEr~F-~pd~VaDLi~Lrkas~L~D~evaEiLn 224 (278)
+.++.|-.++|-.+.+||+|=+.|+-+=-.| ||+.+..+..+=...+|+..+++.|.|
T Consensus 90 ~~v~~lle~~~~~ls~v~~KTLeYl~rFsk~kn~Esa~elre~L~~~kL~efE~aqLaN 148 (187)
T 1y14_A 90 ESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGS 148 (187)
T ss_dssp HHHHHHHHHHSCSCCHHHHHHHHHHHHHCSCCSHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCCHHHHHHcCc
Confidence 3566677788889999999999999999999 999999888664558898888888776
No 9
>2xa0_A BCL-2, apoptosis regulator BCL-2; cell death; 2.70A {Homo sapiens} PDB: 1gjh_A 1ysw_A* 2o21_A* 2o22_A* 1g5m_A
Probab=66.80 E-value=3.9 Score=35.41 Aligned_cols=24 Identities=29% Similarity=0.808 Sum_probs=18.0
Q ss_pred HhCCChHHHHHHHHHHHhcCCCCC
Q 023705 175 KTGFSMEDVLRKYIRYALNEKPFN 198 (278)
Q Consensus 175 KTGFs~~EV~RKYirY~LnEr~F~ 198 (278)
.+||+.-|+++|||.|.|.-+-+.
T Consensus 6 ~~~~~~r~lv~~~i~ykL~q~g~~ 29 (207)
T 2xa0_A 6 RTGYDNREIVMKYIHYKLSQRGYE 29 (207)
T ss_dssp ----CHHHHHHHHHHHHHHTTTCC
T ss_pred cCCCcHHHHHHHHHHHHHhhcCCC
Confidence 569999999999999999877654
No 10
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=65.23 E-value=11 Score=29.44 Aligned_cols=77 Identities=17% Similarity=0.158 Sum_probs=57.0
Q ss_pred HhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHHHHHHHHHHhcCCC-CChHHHHHHH-HHHhhcCCCcHHHHHHHHHHH
Q 023705 150 CKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKP-FNPDLVVNLI-QLRKASMLDDSQVAEILNEIS 227 (278)
Q Consensus 150 vkSLDeyFp~gRdal~~gvLk~L~~KTGFs~~EV~RKYirY~LnEr~-F~pd~VaDLi-~Lrkas~L~D~evaEiLnE~s 227 (278)
-.-|+|||..+-..--.-.+++|. ..+-.-|++++-|-.+|..+. =+.+.+.+|+ +|-+.-.+|.+|+...+.++-
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~--~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v~ 88 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE--VPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 88 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT--CGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC--CCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 346899998765444444556654 346678999999999998762 4467899988 688888899999988876554
Q ss_pred H
Q 023705 228 R 228 (278)
Q Consensus 228 r 228 (278)
.
T Consensus 89 ~ 89 (129)
T 2nsz_A 89 N 89 (129)
T ss_dssp H
T ss_pred h
Confidence 4
No 11
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=63.77 E-value=6.6 Score=25.39 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcC
Q 023705 168 ALKGLVQKTGFSMEDVLRKYIRYALNE 194 (278)
Q Consensus 168 vLk~L~~KTGFs~~EV~RKYirY~LnE 194 (278)
.|..+..+.|.|..|++|.-|+-.|.+
T Consensus 23 ~l~~~a~~~g~s~s~~ir~ai~~~l~~ 49 (55)
T 2k9i_A 23 RLMEIAKEKNLTLSDVCRLAIKEYLDN 49 (55)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 456778889999999999998877654
No 12
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Probab=62.63 E-value=25 Score=26.11 Aligned_cols=47 Identities=15% Similarity=0.261 Sum_probs=29.4
Q ss_pred CCCCCchHHHHHHHHhCCChHHHHHHHHHHHhc--CCCCChHHHHHHHH
Q 023705 161 GDAVNPPALKGLVQKTGFSMEDVLRKYIRYALN--EKPFNPDLVVNLIQ 207 (278)
Q Consensus 161 Rdal~~gvLk~L~~KTGFs~~EV~RKYirY~Ln--Er~F~pd~VaDLi~ 207 (278)
...++...++.|.+.+||+..||-+-|-.|--+ ....+.+.+..++.
T Consensus 5 ~~~l~~~el~~~~~~~~~~~~el~~~f~~~D~~~~~G~i~~~e~~~~l~ 53 (190)
T 2l2e_A 5 QSKLSQDQLQDLVRSTRFDKKELQQWYKGFFKDCPSGHLNKSEFQKIYK 53 (190)
T ss_dssp SCCSCHHHHHHHHHHHCSCSHHHHHHHHHHHHHSCCCEECHHHHHHHHH
T ss_pred cccCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCcCCHHHHHHHHH
Confidence 345777888888888888888775555555443 34455555554443
No 13
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5
Probab=62.08 E-value=22 Score=28.28 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=16.8
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHhCCChHHHHHHHHHHH
Q 023705 153 IDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYA 191 (278)
Q Consensus 153 LDeyFp~gRdal~~gvLk~L~~KTGFs~~EV~RKYirY~ 191 (278)
+++=+......+++..|+.|.+.+||+..||-+=|-.|.
T Consensus 23 ~~~el~~~~~~l~~~~l~~l~~~~~~s~~ei~~l~~~Fd 61 (224)
T 1s1e_A 23 IEDELEMTMVCHRPEGLEQLEAQTNFTKRELQVLYRGFK 61 (224)
T ss_dssp ---------------CHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred cccccccCccCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 333344444557777888888888888877655444443
No 14
>1r2d_A Apoptosis regulator BCL-X; monomeric, alpha-helical; 1.95A {Homo sapiens} SCOP: f.1.4.1 PDB: 2b48_A 1r2i_A 1r2h_A 1r2g_A 1r2e_A 1bxl_A 1lxl_A 1maz_A 3cva_X 1ysg_A* 1ysi_A* 1ysn_A* 2o1y_A* 2yxj_A* 3pl7_A 3qkd_A* 1g5j_A 2lp8_A* 2lpc_A
Probab=62.04 E-value=6.6 Score=34.42 Aligned_cols=37 Identities=19% Similarity=0.117 Sum_probs=29.0
Q ss_pred cHHHHHHHHHHHHhhhhhcCccccccc---------------hhhhhhcccC
Q 023705 216 DSQVAEILNEISRRFVREKDEDALDEQ---------------PPMQALFVFD 252 (278)
Q Consensus 216 D~evaEiLnE~srRiv~~~G~vmmn~~---------------~avqalf~~~ 252 (278)
-++|++.|+.++..|-++|-..+-|+. ..+.-||...
T Consensus 83 ~~~v~~~Lr~lgdElE~~~~~~f~~m~~qL~it~~~a~~~F~~Va~elF~DG 134 (218)
T 1r2d_A 83 MAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDG 134 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSTTHHHHHHHCCCTTCCHHHHHHHHGGGGTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHhcCC
Confidence 478999999999999999887766654 4567778644
No 15
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=60.86 E-value=11 Score=23.55 Aligned_cols=27 Identities=11% Similarity=0.198 Sum_probs=22.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcC
Q 023705 168 ALKGLVQKTGFSMEDVLRKYIRYALNE 194 (278)
Q Consensus 168 vLk~L~~KTGFs~~EV~RKYirY~LnE 194 (278)
.|..+..++|.|..+++|+-|+..|.+
T Consensus 16 ~Ld~~a~~~g~srS~~ir~ai~~~l~~ 42 (45)
T 2cpg_A 16 NLEKMAREMGLSKSAMISVALENYKKG 42 (45)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 455778899999999999999877654
No 16
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A
Probab=60.53 E-value=30 Score=26.19 Aligned_cols=62 Identities=13% Similarity=0.125 Sum_probs=38.7
Q ss_pred CCCchHHHHHHHHhCCChHHHHHHHHHHHhc--CCCCChHHHHHHHHHHhhcCCCcHHHHHHHH
Q 023705 163 AVNPPALKGLVQKTGFSMEDVLRKYIRYALN--EKPFNPDLVVNLIQLRKASMLDDSQVAEILN 224 (278)
Q Consensus 163 al~~gvLk~L~~KTGFs~~EV~RKYirY~Ln--Er~F~pd~VaDLi~Lrkas~L~D~evaEiLn 224 (278)
.++...|+.+.+++||+..||-+=|-.|-.+ ....+.+.+..++.-....+.++.++.++++
T Consensus 15 ~l~~~el~~~~~~~~~~~~~i~~~f~~~d~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~~~~f~ 78 (207)
T 2d8n_A 15 ALSKEILEELQLNTKFSEEELCSWYQSFLKDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFR 78 (207)
T ss_dssp CCCHHHHHHHHHHSSCCHHHHHHHHHHHHHHCTTSEEEHHHHHHHHHHTCTTSCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 6899999999999999988877665555444 3345555555544322222345555555544
No 17
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=59.76 E-value=13 Score=25.75 Aligned_cols=51 Identities=16% Similarity=0.099 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhhcCc
Q 023705 181 EDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKDE 236 (278)
Q Consensus 181 ~EV~RKYirY~LnEr~F~pd~VaDLi~Lrkas~L~D~evaEiLnE~srRiv~~~G~ 236 (278)
.+||+.|++=.-....+|.+.++ +..-|+|-+|+..+.+|-+..-+++.+.
T Consensus 9 ~~Il~~~l~~~~~~~~~dl~~la-----~~t~G~SGADi~~l~~eA~~~a~~~~~~ 59 (78)
T 3kw6_A 9 LDILKIHSRKMNLTRGINLRKIA-----ELMPGASGAEVKGVCTEAGMYALRERRV 59 (78)
T ss_dssp HHHHHHHHTTSEECTTCCHHHHH-----HTCTTCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhcCCCCCCccCHHHHH-----HHcCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 47888776532222334433333 3567999999999999999998888553
No 18
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=59.63 E-value=33 Score=30.77 Aligned_cols=80 Identities=19% Similarity=0.269 Sum_probs=54.4
Q ss_pred HhhHHHHHhcCCCC-------CC--chHHHHHHHHhCCCh-HHHHHHHHHHHhcCCC-CChHHHHHHHHHHhhcCCCcHH
Q 023705 150 CKTIDELFQKGGDA-------VN--PPALKGLVQKTGFSM-EDVLRKYIRYALNEKP-FNPDLVVNLIQLRKASMLDDSQ 218 (278)
Q Consensus 150 vkSLDeyFp~gRda-------l~--~gvLk~L~~KTGFs~-~EV~RKYirY~LnEr~-F~pd~VaDLi~Lrkas~L~D~e 218 (278)
++.|..||.+-... ++ ..+|..|.. -+-+. ++|..-|=-+ ++.-| .+++.|.-++++|+ .++-++
T Consensus 283 ~~~l~~~f~~~~~~~~~~~~~v~~~~~~l~~l~~-L~~d~~~~i~~~~~~l-~~~ypD~~~~~V~aiL~~R~--D~~~~~ 358 (399)
T 2fji_1 283 FEIFYQLFVKVLDGNESKDTLITQNFTVMEFFMD-LSCEPIDSILDIWQKY-LEVYWDSRIDLLVGILKCRK--DVSSSE 358 (399)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHH-HHHSCGGGHHHHHHHH-HTTCTTCCSHHHHHHHTTCT--TCCHHH
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHH-HHhCCCCCHHHHHHHHHhcc--CCCHHH
Confidence 45667777662222 21 246666666 55566 5555544444 55555 89999999999999 889999
Q ss_pred HHHHHHHHHHhhhhhc
Q 023705 219 VAEILNEISRRFVREK 234 (278)
Q Consensus 219 vaEiLnE~srRiv~~~ 234 (278)
+.++|... ++|.+.|
T Consensus 359 ~k~ll~~~-~~~~~~~ 373 (399)
T 2fji_1 359 RKKIVQQA-TEMLHEY 373 (399)
T ss_dssp HHHHHHHH-HHHHHHH
T ss_pred HHHHHHHH-HHHHHhH
Confidence 99998876 7777555
No 19
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=55.59 E-value=17 Score=29.37 Aligned_cols=87 Identities=17% Similarity=0.155 Sum_probs=60.8
Q ss_pred HhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHHHHHHHHHHhcCC-CCChHHHHHHH-HHHhhcCCCcHHHHHHHHHHH
Q 023705 150 CKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEK-PFNPDLVVNLI-QLRKASMLDDSQVAEILNEIS 227 (278)
Q Consensus 150 vkSLDeyFp~gRdal~~gvLk~L~~KTGFs~~EV~RKYirY~LnEr-~F~pd~VaDLi-~Lrkas~L~D~evaEiLnE~s 227 (278)
-.-|+|||..+-..--.-.+++|. ..+-.-|++++=|-.+|..+ .=+.+.+.+|+ +|-+.-.+|.+|+...+.++-
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~--~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~vl 90 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE--VPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 90 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT--CGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC--CCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 346899998864433344555553 34667899999999999875 34467888988 688888899999988876544
Q ss_pred HhhhhhcCccccccc
Q 023705 228 RRFVREKDEDALDEQ 242 (278)
Q Consensus 228 rRiv~~~G~vmmn~~ 242 (278)
.. ---+.+|.-
T Consensus 91 ~~----ldDl~lDiP 101 (152)
T 2ion_A 91 NE----IPDINLDVP 101 (152)
T ss_dssp HH----HHHHHHHST
T ss_pred Hh----ChHhccCcc
Confidence 43 333445543
No 20
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=55.11 E-value=8.7 Score=31.38 Aligned_cols=78 Identities=17% Similarity=0.253 Sum_probs=55.1
Q ss_pred HHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChHHHHHHHH-HHhhcCCCcHHHHHHHHHHH
Q 023705 149 VCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQ-LRKASMLDDSQVAEILNEIS 227 (278)
Q Consensus 149 LvkSLDeyFp~gRdal~~gvLk~L~~KTGFs~~EV~RKYirY~LnEr~F~pd~VaDLi~-Lrkas~L~D~evaEiLnE~s 227 (278)
+...|+|||..+-...-...+++|... --.-+++++-|..+|..++=.-+++..|+. |. .-.||.+|+.+.+.++-
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~~p--~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~-~~~ls~~~i~~Gf~~ll 89 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLNLG--EMKSGVPVLAVSLALEGKASHREMTSKLLSDLC-GTVMSTTDVEKSFDKLL 89 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCS--GGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHB-TTTBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHH
Confidence 345789999987554444455555422 235688999999999887766788888865 74 48899999987776554
Q ss_pred Hh
Q 023705 228 RR 229 (278)
Q Consensus 228 rR 229 (278)
+.
T Consensus 90 e~ 91 (165)
T 2rg8_A 90 KD 91 (165)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 21
>2c35_A Human RPB4, DNA-directed RNA polymerase II 16 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: a.60.8.2
Probab=53.22 E-value=23 Score=28.92 Aligned_cols=47 Identities=19% Similarity=0.270 Sum_probs=36.2
Q ss_pred CChHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHhhcCCCcHHHHHHHH
Q 023705 178 FSMEDVLRKYIRYALNEKPF-NPDLVVNLIQLRKASMLDDSQVAEILN 224 (278)
Q Consensus 178 Fs~~EV~RKYirY~LnEr~F-~pd~VaDLi~Lrkas~L~D~evaEiLn 224 (278)
-.+.+|++|=+.|+=+=-.| |++.+..++.+=.-.+|++.|++-|.|
T Consensus 65 ~els~v~~kTl~Yl~~F~k~k~~e~~~~l~e~L~~~~L~~~E~a~L~N 112 (152)
T 2c35_A 65 QELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELACLAN 112 (152)
T ss_dssp CCCCHHHHHHHHHHHHTCSCCSHHHHHHHHHHHHTSSCCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCCHHHHHHhcc
Confidence 44567888888888888888 888888887766667777777777765
No 22
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Probab=52.69 E-value=51 Score=24.26 Aligned_cols=45 Identities=16% Similarity=0.289 Sum_probs=28.0
Q ss_pred CCCCchHHHHHHHHhCCChHHHHHHHHHHHhc--CCCCChHHHHHHH
Q 023705 162 DAVNPPALKGLVQKTGFSMEDVLRKYIRYALN--EKPFNPDLVVNLI 206 (278)
Q Consensus 162 dal~~gvLk~L~~KTGFs~~EV~RKYirY~Ln--Er~F~pd~VaDLi 206 (278)
..+++..++.|...|+|+..||-+=|-.|--+ ...-+.+.+..++
T Consensus 6 ~~l~~~~l~~l~~~~~~~~~~i~~~f~~fd~~~~~G~i~~~e~~~~l 52 (190)
T 1g8i_A 6 SKLKPEVVEELTRKTYFTEKEVQQWYKGFIKDCPSGQLDAAGFQKIY 52 (190)
T ss_dssp CSCCHHHHHHHHHTSSSCHHHHHHHHHHHHHHCTTSEEEHHHHHHHH
T ss_pred ccCCHHHHHHHHHccCCCHHHHHHHHHHHHHhCCCCcCCHHHHHHHH
Confidence 45778888888888888887776555444433 2334444444443
No 23
>3rpp_A Glutathione S-transferase kappa 1; glutathione transferase, kappa GST, TRX domain, GSH binding, detoxification, APO form; 1.80A {Homo sapiens} PDB: 3rpn_A 1yzx_A*
Probab=52.34 E-value=29 Score=28.64 Aligned_cols=94 Identities=16% Similarity=0.246 Sum_probs=61.4
Q ss_pred hHHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Q 023705 148 MVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEIS 227 (278)
Q Consensus 148 mLvkSLDeyFp~gRdal~~gvLk~L~~KTGFs~~EV~RKYirY~LnEr~F~pd~VaDLi~Lrkas~L~D~evaEiLnE~s 227 (278)
++-.-...||..+++--+..+|.++..+.|++.+++ ++++. .+++.++++.|++--
T Consensus 117 ~~~al~~A~~~~g~di~d~~~L~~~a~~~GLd~~~~-~~~l~-----------------------~~~s~~~~~~l~~~~ 172 (234)
T 3rpp_A 117 ASRELWMRVWSRNEDITEPQSILAAAEKAGMSAEQA-QGLLE-----------------------KIATPKVKNQLKETT 172 (234)
T ss_dssp HHHHHHHHHHTSCCCCSSHHHHHHHHHHTTCCHHHH-HHHHT-----------------------TTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHcCCCHHHH-HHHHH-----------------------HccCHHHHHHHHHHH
Confidence 344445667888999889999999999999987553 22211 135566666666554
Q ss_pred HhhhhhcC-----ccccccchhhhhhcccCCccchhhhhhhccc
Q 023705 228 RRFVREKD-----EDALDEQPPMQALFVFDPVHNICCFLHMKWC 266 (278)
Q Consensus 228 rRiv~~~G-----~vmmn~~~avqalf~~~~~~~~~~~~~~~~~ 266 (278)
+... ++| ++++|..+=-+.+||.|+.+-+.-+|...|-
T Consensus 173 ~~a~-~~Gv~GvPtfvv~~~g~~~~f~G~drl~~l~~~L~~~~~ 215 (234)
T 3rpp_A 173 EAAC-RYGAFGLPITVAHVDGQTHMLFGSDRMELLAHLLGEKWM 215 (234)
T ss_dssp HHHH-HTTCSSSCEEEEEETTEEEEEESSSCHHHHHHHHTCCCC
T ss_pred HHHH-HcCCCCCCEEEEeCCCCcCceeCccCHHHHHHHhccccC
Confidence 4433 344 3445422212679999999988888877774
No 24
>3h87_C Putative uncharacterized protein; toxin antitoxin complex, vapbc complex, RHH motif, structura genomics; 1.49A {Mycobacterium tuberculosis}
Probab=51.30 E-value=8.3 Score=29.05 Aligned_cols=51 Identities=18% Similarity=0.314 Sum_probs=34.7
Q ss_pred chHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChH---HHHHHHHHH-hhcCCCcHHHH
Q 023705 166 PPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPD---LVVNLIQLR-KASMLDDSQVA 220 (278)
Q Consensus 166 ~gvLk~L~~KTGFs~~EV~RKYirY~LnEr~F~pd---~VaDLi~Lr-kas~L~D~eva 220 (278)
...|+....+-|.|.+|-+|-.|.=. .+.|+ .++||-..- .+.+|+|.||-
T Consensus 14 ~~~L~~rAa~~G~S~~~ylr~~Le~~----a~~~~~~~~~~~l~r~~~~~~dl~D~~~m 68 (73)
T 3h87_C 14 LASLDAIAARLGLSRTEYIRRRLAQD----AQTARVTVTAADLRRLRGAVAGLGDPELM 68 (73)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH----HTSCCCCCCHHHHHHHHHHSGGGGCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH----hcCCcccccHHHHHHHHHHHcccCCHHHH
Confidence 35678888999999998777776432 33334 556655544 45599999874
No 25
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=50.40 E-value=15 Score=26.73 Aligned_cols=51 Identities=16% Similarity=0.099 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhhcCc
Q 023705 181 EDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKDE 236 (278)
Q Consensus 181 ~EV~RKYirY~LnEr~F~pd~VaDLi~Lrkas~L~D~evaEiLnE~srRiv~~~G~ 236 (278)
.+||+.|++=.--...+|.+.+| +..-|+|=+|++.+.+|-+-.-+++...
T Consensus 17 ~~IL~~~l~~~~l~~dvdl~~LA-----~~T~G~SGADL~~l~~eAa~~alr~~~~ 67 (86)
T 2krk_A 17 LDILKIHSRKMNLTRGINLRKIA-----ELMPGASGAEVKGVCTEAGMYALRERRV 67 (86)
T ss_dssp HHHHHHHTTTSEECTTCCCHHHH-----HTCSSCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCCCcccCHHHHH-----HHcCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 57777776532222344444444 2456999999999999998888877643
No 26
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=50.15 E-value=58 Score=23.46 Aligned_cols=68 Identities=12% Similarity=0.023 Sum_probs=44.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhc--------CCCCChHHHHHHHHHHhhcCCCcHHHHHHHH-----HHHHhhhhhcC
Q 023705 169 LKGLVQKTGFSMEDVLRKYIRYALN--------EKPFNPDLVVNLIQLRKASMLDDSQVAEILN-----EISRRFVREKD 235 (278)
Q Consensus 169 Lk~L~~KTGFs~~EV~RKYirY~Ln--------Er~F~pd~VaDLi~Lrkas~L~D~evaEiLn-----E~srRiv~~~G 235 (278)
.+++.+..|.|..-|.|-.-+|.-. -+..+++....++.+...-.++-.++++.|+ .+-.|++++.|
T Consensus 25 ~~~ia~~lgis~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s~~~i~~~lg~~~s~~tV~r~l~~~g 104 (141)
T 1u78_A 25 LHEMSRKISRSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTARDIRNELQLSASKRTILNVIKRSG 104 (141)
T ss_dssp HHHHHHHHTCCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCCHHHHHHHTTCCSCHHHHHHHHHHTC
T ss_pred HHHHHHHHCcCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCccHHHHHHHHHHCC
Confidence 5678888888877664422233211 1357888888888875556688888888775 45567777766
Q ss_pred c
Q 023705 236 E 236 (278)
Q Consensus 236 ~ 236 (278)
-
T Consensus 105 ~ 105 (141)
T 1u78_A 105 V 105 (141)
T ss_dssp -
T ss_pred C
Confidence 3
No 27
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8
Probab=49.00 E-value=3.6 Score=37.33 Aligned_cols=12 Identities=25% Similarity=0.426 Sum_probs=0.0
Q ss_pred hhhhHHHHhcch
Q 023705 65 EEVEVEVEEELP 76 (278)
Q Consensus 65 ~e~e~e~e~e~~ 76 (278)
+|+|||+|++|.
T Consensus 296 ~e~~ee~d~d~g 307 (312)
T 3u5i_q 296 AEEEEESDDDMG 307 (312)
T ss_dssp ------------
T ss_pred ccccccccccCC
Confidence 344445556664
No 28
>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens}
Probab=48.22 E-value=13 Score=31.49 Aligned_cols=21 Identities=14% Similarity=0.028 Sum_probs=19.5
Q ss_pred cCCCcHHHHHHHHHHHHhhhh
Q 023705 212 SMLDDSQVAEILNEISRRFVR 232 (278)
Q Consensus 212 s~L~D~evaEiLnE~srRiv~ 232 (278)
.|++.+++++++.+-++|+|.
T Consensus 271 ~g~~~e~~~~~~~~Na~rlf~ 291 (301)
T 2xio_A 271 RDEDPLELANTLYNNTIKVFF 291 (301)
T ss_dssp HTCCHHHHHHHHHHHHHHHHC
T ss_pred HCcCHHHHHHHHHHHHHHHhC
Confidence 499999999999999999994
No 29
>3iz5_s 60S acidic ribosomal protein P0 (L10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_s
Probab=48.06 E-value=3.8 Score=37.28 Aligned_cols=13 Identities=38% Similarity=0.419 Sum_probs=0.0
Q ss_pred hhhhhHHHHhcch
Q 023705 64 AEEVEVEVEEELP 76 (278)
Q Consensus 64 ~~e~e~e~e~e~~ 76 (278)
++|+|||+|++|.
T Consensus 302 ~~e~~ee~d~d~g 314 (319)
T 3iz5_s 302 KEEPEEESDGDLG 314 (319)
T ss_dssp -------------
T ss_pred cccccccccccCC
Confidence 3344555556664
No 30
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A
Probab=47.89 E-value=58 Score=23.96 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=17.9
Q ss_pred CCCchHHHHHHHHhCCChHHHHHHHHHH
Q 023705 163 AVNPPALKGLVQKTGFSMEDVLRKYIRY 190 (278)
Q Consensus 163 al~~gvLk~L~~KTGFs~~EV~RKYirY 190 (278)
.++...|+.|.+.++|+.+||-+=|-.|
T Consensus 7 ~l~~~~l~~l~~~~~~~~~~i~~~~~~f 34 (190)
T 1fpw_A 7 KLSKDDLTCLKQSTYFDRREIQQWHKGF 34 (190)
T ss_dssp CSTTHHHHHHTTTCCSTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 4667777777777777777654433333
No 31
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=47.88 E-value=47 Score=26.75 Aligned_cols=36 Identities=17% Similarity=0.263 Sum_probs=19.6
Q ss_pred HHHhcCCCCCCchHHHHHHHHhCCChHHHHHHHHHH
Q 023705 155 ELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRY 190 (278)
Q Consensus 155 eyFp~gRdal~~gvLk~L~~KTGFs~~EV~RKYirY 190 (278)
.-+.+.+..+++..|+.+...++|+..||-+=|-.|
T Consensus 65 ~ele~~~~~l~~e~l~~l~~~~~~s~~ei~~l~~~f 100 (256)
T 2jul_A 65 SELELSTVRHQPEGLDQLQAQTKFTKKELQSLYRGF 100 (256)
T ss_dssp -----------CTHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred hhhccccccCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 334566677888899999999999988876544444
No 32
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=47.83 E-value=47 Score=27.70 Aligned_cols=54 Identities=11% Similarity=0.135 Sum_probs=34.9
Q ss_pred hHHHHHHHHhCCChHHHHHHHHH---HHhcCCCCChHHHHHHHH-HHhhcCCCcHHHHHHHH
Q 023705 167 PALKGLVQKTGFSMEDVLRKYIR---YALNEKPFNPDLVVNLIQ-LRKASMLDDSQVAEILN 224 (278)
Q Consensus 167 gvLk~L~~KTGFs~~EV~RKYir---Y~LnEr~F~pd~VaDLi~-Lrkas~L~D~evaEiLn 224 (278)
+.+.-|+.+.|++.++| ++-+. ..|. .++|.+..-+. +++..|++++||..++.
T Consensus 113 ~~v~~L~~~lG~~~~~i-~~ll~~~P~il~---~s~e~~~~~v~~l~~~~G~s~~ei~~~v~ 170 (270)
T 3m66_A 113 NRLGFFQKELELSVKKT-RDLVVRLPRLLT---GSLEPVKENMKVYRLELGFKHNEIQHMIT 170 (270)
T ss_dssp HHHHHHHHHHCCCHHHH-HHHHHHSGGGGT---SCSHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHH-HHHHHhCCccee---echHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 44556666788888887 33333 2232 34566666666 67888888888876554
No 33
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Probab=47.28 E-value=28 Score=25.73 Aligned_cols=60 Identities=20% Similarity=0.192 Sum_probs=37.1
Q ss_pred HHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHhh-cCCCcHHHHHHHHHHH
Q 023705 149 VCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKA-SMLDDSQVAEILNEIS 227 (278)
Q Consensus 149 LvkSLDeyFp~gRdal~~gvLk~L~~KTGFs~~EV~RKYirY~LnEr~F~pd~VaDLi~Lrka-s~L~D~evaEiLnE~s 227 (278)
||+.|| -..=+.|.++-||+..+| +|++. + ++-+..|+.+=.+ -|-|-+...++|+++.
T Consensus 15 l~~lL~-----------g~dW~~LA~~Lg~~~~~I--~~~~~---~----~~pt~~lL~~W~~r~~atv~~L~~aL~~ig 74 (85)
T 1ngr_A 15 VEKLLN-----------GDTWRHLAGELGYQPEHI--DSFTH---E----ACPVRALLASWGAQDSATLDALLAALRRIQ 74 (85)
T ss_dssp HHHHSC-----------TTHHHHHHHHTTCCHHHH--HHHHH---S----SCHHHHHHHHGGGSTTCBHHHHHHHHHHTT
T ss_pred HHHHhC-----------cCCHHHHHHHcCCCHHHH--HHHHc---C----CCHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Confidence 477777 334789999999998766 22322 1 2335555555433 3455666777777765
Q ss_pred H
Q 023705 228 R 228 (278)
Q Consensus 228 r 228 (278)
|
T Consensus 75 R 75 (85)
T 1ngr_A 75 R 75 (85)
T ss_dssp C
T ss_pred c
Confidence 5
No 34
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=47.11 E-value=50 Score=24.24 Aligned_cols=14 Identities=21% Similarity=0.159 Sum_probs=6.9
Q ss_pred CCchHHHHHHHHhC
Q 023705 164 VNPPALKGLVQKTG 177 (278)
Q Consensus 164 l~~gvLk~L~~KTG 177 (278)
++...|+.+....|
T Consensus 36 i~~~e~~~~l~~~~ 49 (183)
T 1s6c_A 36 VNEETFKQIYAQFF 49 (183)
T ss_dssp ECHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHc
Confidence 45555555544444
No 35
>1yz7_A Probable translation initiation factor 2 alpha subunit; helical domain, alpha-beta domain; 2.26A {Pyrococcus abyssi}
Probab=46.96 E-value=21 Score=30.37 Aligned_cols=60 Identities=18% Similarity=0.070 Sum_probs=38.8
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChHHHHHHHH-----HHhhcCCCcHHHHHHHHHHHHh
Q 023705 167 PALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQ-----LRKASMLDDSQVAEILNEISRR 229 (278)
Q Consensus 167 gvLk~L~~KTGFs~~EV~RKYirY~LnEr~F~pd~VaDLi~-----Lrkas~L~D~evaEiLnE~srR 229 (278)
+-|+-..+++|.+.+|..++.-|++.++-.=--|+..+.+. |.. + ++ +++.+.|.++++|
T Consensus 18 sil~~vAek~~~~~Eely~~i~w~L~~kyG~~ydaFk~av~~~~~vl~~-l-ip-~~~~~~L~~~i~~ 82 (188)
T 1yz7_A 18 NLLKLAAEKLGKDFETAWREVWVPLEEEWGEVYAAFEDAAKDGIDVLKG-H-VP-DEWLPVLKEIIDN 82 (188)
T ss_dssp HHHHHHHHHTTCCHHHHHHHTHHHHHHHHSSHHHHHHHHHHHCGGGSBT-T-BC-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHhcChHHHHH-h-CC-HHHHHHHHHHHHH
Confidence 45778899999999999999999987654322233333332 222 2 55 5666666665554
No 36
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=46.91 E-value=66 Score=24.90 Aligned_cols=15 Identities=27% Similarity=0.231 Sum_probs=6.0
Q ss_pred CCCChHHHHHHHHHH
Q 023705 195 KPFNPDLVVNLIQLR 209 (278)
Q Consensus 195 r~F~pd~VaDLi~Lr 209 (278)
--|+.+.+..++.+.
T Consensus 56 ~G~sl~eI~~~l~~~ 70 (135)
T 1q06_A 56 VGFNLEESGELVNLF 70 (135)
T ss_dssp TTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhh
Confidence 334444444444333
No 37
>2y6w_A BCL-2-like protein 2; apoptosis; HET: PGE; 2.00A {Homo sapiens} PDB: 1mk3_A 1zy3_A
Probab=46.35 E-value=14 Score=30.51 Aligned_cols=24 Identities=13% Similarity=0.396 Sum_probs=17.7
Q ss_pred HHhCCChHHHHHHHHHHHhcCCCC
Q 023705 174 QKTGFSMEDVLRKYIRYALNEKPF 197 (278)
Q Consensus 174 ~KTGFs~~EV~RKYirY~LnEr~F 197 (278)
...-.+..++++.||+|.|+++.+
T Consensus 17 ~~~~~~~~~L~~dYi~y~l~~~g~ 40 (177)
T 2y6w_A 17 PASAPDTRALVADFVGYKLRQKGY 40 (177)
T ss_dssp ---CCCHHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCC
Confidence 344556789999999999997655
No 38
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=46.27 E-value=83 Score=23.79 Aligned_cols=60 Identities=7% Similarity=0.122 Sum_probs=40.0
Q ss_pred hHHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHH---HHHHHHHHh-cCCCCChHHHHHHHH
Q 023705 148 MVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDV---LRKYIRYAL-NEKPFNPDLVVNLIQ 207 (278)
Q Consensus 148 mLvkSLDeyFp~gRdal~~gvLk~L~~KTGFs~~EV---~RKYirY~L-nEr~F~pd~VaDLi~ 207 (278)
.+.+-|..++.+.+-.++..+++.|...++-+..++ +++-..|++ +.+.-|.+.|.++++
T Consensus 178 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~~~It~~~v~~~l~ 241 (242)
T 3bos_A 178 EKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQRKLTIPFVKEMLR 241 (242)
T ss_dssp GHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHhh
Confidence 344455555655556788899999998888777654 556666764 455677777666553
No 39
>3erp_A Putative oxidoreductase; funded by the national institute of allergy and infectious D of NIH contract number HHSN272200700058C; 1.55A {Salmonella enterica subsp}
Probab=46.03 E-value=59 Score=28.46 Aligned_cols=52 Identities=15% Similarity=0.330 Sum_probs=41.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCC--------CChHHHHHHHHHHhhcCCCcHHHHHH
Q 023705 168 ALKGLVQKTGFSMEDVLRKYIRYALNEKP--------FNPDLVVNLIQLRKASMLDDSQVAEI 222 (278)
Q Consensus 168 vLk~L~~KTGFs~~EV~RKYirY~LnEr~--------F~pd~VaDLi~Lrkas~L~D~evaEi 222 (278)
.|++|..|.|-|..+|. |+|.|.-.. -+++-+.+-++.-...-||++|+++|
T Consensus 286 ~l~~iA~~~g~t~aqva---L~w~l~~~~v~~vI~G~~~~~~l~enl~a~~~~~Ls~ee~~~i 345 (353)
T 3erp_A 286 RLNELAARRGQKLSQMA---LAWVLRNDNVTSVLIGASKPSQIEDAVGMLANRRFSAAECAEI 345 (353)
T ss_dssp HHHHHHHHTTCCHHHHH---HHHHTTTSCCCEEEECCSSHHHHHHHHHGGGGCCCCHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHH---HHHHHhCCCCcEEEeCCCCHHHHHHHHHHhccCCCCHHHHHHH
Confidence 88999999999999997 667776543 36888888777654568999999876
No 40
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=45.89 E-value=3.9 Score=30.64 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=18.1
Q ss_pred CCcHHHHHHHH----HHHHhhhhhcCc
Q 023705 214 LDDSQVAEILN----EISRRFVREKDE 236 (278)
Q Consensus 214 L~D~evaEiLn----E~srRiv~~~G~ 236 (278)
|||.+++++|+ .+|||-|-||=.
T Consensus 38 lSD~~I~~~L~~~Gi~IaRRTVaKYRe 64 (76)
T 2ahq_A 38 YSDQEIANILKEKGFKVARRTVAKYRE 64 (76)
T ss_dssp CCHHHHHHHHTTTSSCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCccHHHHHHHHH
Confidence 78888888887 478998888843
No 41
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5
Probab=44.89 E-value=53 Score=24.26 Aligned_cols=30 Identities=17% Similarity=0.452 Sum_probs=21.6
Q ss_pred CCCCchHHHHHHHHhCCChHHHHHHHHHHH
Q 023705 162 DAVNPPALKGLVQKTGFSMEDVLRKYIRYA 191 (278)
Q Consensus 162 dal~~gvLk~L~~KTGFs~~EV~RKYirY~ 191 (278)
..+++..|+.|...|+|+..||-+=|-.|-
T Consensus 6 s~l~~~~l~~l~~~~~~~~~~i~~~f~~fd 35 (193)
T 1bjf_A 6 SKLRPEVMQDLLESTDFTEHEIQEWYKGFL 35 (193)
T ss_dssp CCCCHHHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 357788888888888998888755444443
No 42
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}
Probab=44.88 E-value=11 Score=29.98 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=16.2
Q ss_pred CCChHHHHHHHHHHHhcCCCC
Q 023705 177 GFSMEDVLRKYIRYALNEKPF 197 (278)
Q Consensus 177 GFs~~EV~RKYirY~LnEr~F 197 (278)
-|++.|++|+-|.||++|+-|
T Consensus 95 ~Y~s~e~L~~kL~~AI~~~gf 115 (118)
T 3pt3_A 95 LYSSKQILKQKLLLAIKTKNF 115 (118)
T ss_dssp CCSSHHHHHHHHHHHHC----
T ss_pred CCCCHHHHHHHHHHHHHhCCc
Confidence 589999999999999999766
No 43
>1o0l_A Apoptosis regulator BCL-W; helical bundle, binding groove, BH3; NMR {Homo sapiens} SCOP: f.1.4.1
Probab=43.58 E-value=14 Score=30.67 Aligned_cols=53 Identities=8% Similarity=0.116 Sum_probs=35.9
Q ss_pred CChHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhhcCcc
Q 023705 178 FSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKDED 237 (278)
Q Consensus 178 Fs~~EV~RKYirY~LnEr~F~pd~VaDLi~Lrkas~L~D~evaEiLnE~srRiv~~~G~v 237 (278)
.+..++++.||.|.|+.+-+..... ....-+.+++++.|+.++..+-++|-..
T Consensus 13 ~~~~~L~~dYi~yrl~~~g~~~~~~-------~~~~~~~~~v~~~Lr~~gdele~~~~~~ 65 (188)
T 1o0l_A 13 PDTRALVADFVGYKLRQKGYVCGAG-------PGEGPAADPLHQAMRAAGDEFETRFRRT 65 (188)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTTCS-------GGGSCSCSTTHHHHHHHHHHHHHHCSCS
T ss_pred HHHHHHHHHHHHHHHccCCCCCCCC-------CCCCCChhHHHHHHHHHHHHHHHHhHHH
Confidence 4567899999999999765421100 1223455678888888888887777654
No 44
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=43.50 E-value=31 Score=24.04 Aligned_cols=51 Identities=10% Similarity=0.119 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhhcCc
Q 023705 181 EDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKDE 236 (278)
Q Consensus 181 ~EV~RKYirY~LnEr~F~pd~VaDLi~Lrkas~L~D~evaEiLnE~srRiv~~~G~ 236 (278)
.+||+.|++ ..+.++|.=-+-|+ +..-|+|=+|+..+.+|-+..-+++..+
T Consensus 7 ~~Il~~~l~----~~~~~~~vdl~~la-~~t~G~SGADi~~l~~eA~~~a~~~~~~ 57 (83)
T 3aji_B 7 RLIFSTITS----KMNLSEEVDLEDYV-ARPDKISGADINSICQESGMLAVRENRY 57 (83)
T ss_dssp HHHHHHHHT----TSCBCTTCCTHHHH-TSSCCCCHHHHHHHHHHHHHGGGTSCCS
T ss_pred HHHHHHHhC----CCCCCcccCHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHhccC
Confidence 467777664 33333322111122 3456999999999999999888887643
No 45
>4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A
Probab=43.33 E-value=21 Score=31.38 Aligned_cols=43 Identities=16% Similarity=0.061 Sum_probs=31.6
Q ss_pred cCCCcHHHHHHHHHHHHhhh-------hhcCccccccchhhhhhcccCCc
Q 023705 212 SMLDDSQVAEILNEISRRFV-------REKDEDALDEQPPMQALFVFDPV 254 (278)
Q Consensus 212 s~L~D~evaEiLnE~srRiv-------~~~G~vmmn~~~avqalf~~~~~ 254 (278)
-.|+-.||.++|..+|+.+- .+||-=++|...|+|+|.++..+
T Consensus 296 ~~lt~~~v~~~L~~tA~~~~~~~~~~~~~~G~G~vn~~~A~~~~~~~~~~ 345 (357)
T 4h6x_A 296 KPVDAEAVRTALLKTAIPCDPEVVEEPERCLRGFVNIPGAMKVLFGQPSV 345 (357)
T ss_dssp CCCCHHHHHHHHHHC--------------CTTCBCCHHHHHHHHHSCCCG
T ss_pred CCCCHHHHHHHHHhhCccCCCCCCCCcccceeEEecHHHHHHHHhCCCce
Confidence 36899999999999988652 34677789999999999998765
No 46
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=43.27 E-value=17 Score=27.08 Aligned_cols=41 Identities=15% Similarity=0.227 Sum_probs=29.1
Q ss_pred CCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhhc--Ccccc
Q 023705 195 KPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREK--DEDAL 239 (278)
Q Consensus 195 r~F~pd~VaDLi~Lrkas~L~D~evaEiLnE~srRiv~~~--G~vmm 239 (278)
.-++++ +|-++|+..|||-.|+|+.|. +++.-+.+| |....
T Consensus 69 ~~~~~~---~l~~~R~~~glsq~~la~~~g-~s~~~i~~~E~g~~~p 111 (133)
T 3o9x_A 69 ETVAPE---FIVKVRKKLSLTQKEASEIFG-GGVNAFSRYEKGNAQP 111 (133)
T ss_dssp TTCCHH---HHHHHHHHTTCCHHHHHHHHC-SCTTHHHHHHHTSSCC
T ss_pred cCCCHH---HHHHHHHHcCCCHHHHHHHHC-CCHHHHHHHHCCCCCC
Confidence 445554 577889999999999999985 555555554 64433
No 47
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=42.88 E-value=49 Score=26.26 Aligned_cols=63 Identities=14% Similarity=0.148 Sum_probs=32.1
Q ss_pred hCCChHHHHHHHHHHHhcCCC-----CChHHHHHHHH-HHhhcCCCcHHHHHHHHHHHHhhhhhcCccccc
Q 023705 176 TGFSMEDVLRKYIRYALNEKP-----FNPDLVVNLIQ-LRKASMLDDSQVAEILNEISRRFVREKDEDALD 240 (278)
Q Consensus 176 TGFs~~EV~RKYirY~LnEr~-----F~pd~VaDLi~-Lrkas~L~D~evaEiLnE~srRiv~~~G~vmmn 240 (278)
...|..|+-+|=.+...+-+- |+++.|+.+|+ |..---|||+..|+..-..-.+ +.||+..+-
T Consensus 18 r~~S~~EL~~kL~~k~~~~~g~e~~~~~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~--~g~G~~~I~ 86 (159)
T 3c1d_A 18 RDHSEQELRRKLAAPIMGKNGPEEIDATAEDYERVIAWCHEHGYLDDSRFVARFIASRSR--KGYGPARIR 86 (159)
T ss_dssp SCCCHHHHHHHHHCC-----------CCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHH--TTCCHHHHH
T ss_pred ccccHHHHHHHHHHHhhcccCccccCCCHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHh--CCccHHHHH
Confidence 456666655543322111112 77777777665 4444446777777765442222 557766553
No 48
>3ayh_A DNA-directed RNA polymerase III subunit RPC9; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=42.30 E-value=39 Score=26.92 Aligned_cols=46 Identities=13% Similarity=0.270 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHhcCCC---CChHHHHHHHHHHhhcCCCcHHHHHHHHH
Q 023705 180 MEDVLRKYIRYALNEKP---FNPDLVVNLIQLRKASMLDDSQVAEILNE 225 (278)
Q Consensus 180 ~~EV~RKYirY~LnEr~---F~pd~VaDLi~Lrkas~L~D~evaEiLnE 225 (278)
...|+++.++|+-+=-. -+++.+.+++..=+..+|+..|+.-|+|-
T Consensus 52 l~ti~~e~l~YL~~~p~~~~q~~e~i~~l~~~L~~~~Ltk~E~LqivNl 100 (136)
T 3ayh_A 52 LRTIQFEILKYLSSQGNCEGLTKERFLDCIAIFNEFELTKAEILVILNN 100 (136)
T ss_dssp HHHHHHHHHHHHHTTTCCTTCCHHHHHHHHHTTTTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccccCHHHHHHHHHHHHhcCCCHHHHHHHhcc
Confidence 44555666666544321 24666666666556667777776666664
No 49
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=41.51 E-value=20 Score=24.31 Aligned_cols=58 Identities=14% Similarity=0.238 Sum_probs=34.2
Q ss_pred hcCCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhhc--Cccccccc-hhhhhhcccCC
Q 023705 192 LNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREK--DEDALDEQ-PPMQALFVFDP 253 (278)
Q Consensus 192 LnEr~F~pd~VaDLi~Lrkas~L~D~evaEiLnE~srRiv~~~--G~vmmn~~-~avqalf~~~~ 253 (278)
.|+..|+++. |-.+|+..|||-.|+|+.+. +++.-+.+| |....+.+ ...-.+++.+|
T Consensus 6 v~~~~~~g~~---lr~~R~~~gltq~elA~~~g-vs~~tis~~E~G~~~p~~~~~~l~~~l~~~p 66 (73)
T 3fmy_A 6 VNAETVAPEF---IVKVRKKLSLTQKEASEIFG-GGVNAFSRYEKGNAXPHPSTIKLLRVLDKHP 66 (73)
T ss_dssp --CCCCCHHH---HHHHHHHTTCCHHHHHHHHC-SCTTHHHHHHTTSSCCCHHHHHHHHHHHHCG
T ss_pred hccCCCCHHH---HHHHHHHcCCCHHHHHHHhC-cCHHHHHHHHcCCCCCCHHHHHHHHHHCCCH
Confidence 3556676665 55789999999999999985 555555443 54333322 23333444444
No 50
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=40.97 E-value=52 Score=19.05 Aligned_cols=29 Identities=3% Similarity=0.023 Sum_probs=21.8
Q ss_pred CCCChHHHHHHHHHHhhcCCCcHHHHHHHH
Q 023705 195 KPFNPDLVVNLIQLRKASMLDDSQVAEILN 224 (278)
Q Consensus 195 r~F~pd~VaDLi~Lrkas~L~D~evaEiLn 224 (278)
+.++++.-..++.+. ..|++-.|||+.|+
T Consensus 4 ~~l~~~~~~~i~~~~-~~g~s~~~IA~~lg 32 (51)
T 1tc3_C 4 SALSDTERAQLDVMK-LLNVSLHEMSRKIS 32 (51)
T ss_dssp CCCCHHHHHHHHHHH-HTTCCHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHH-HcCCCHHHHHHHHC
Confidence 356777777777665 56899999999885
No 51
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=40.23 E-value=9.9 Score=29.34 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=23.5
Q ss_pred HHHHhcCCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Q 023705 188 IRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISR 228 (278)
Q Consensus 188 irY~LnEr~F~pd~VaDLi~Lrkas~L~D~evaEiLnE~sr 228 (278)
||.+|+|.. + -.+-.|++++||+|.|++-+|-=.+|
T Consensus 13 VW~~L~~~~--~---~s~~el~k~t~l~d~el~lAIGWLaR 48 (82)
T 2l02_A 13 VWHALNEAD--G---ISIPELARKVNLSVESTALAVGWLAR 48 (82)
T ss_dssp HHHHHHHCC--S---BCHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred HHHHHhccC--C---CCHHHHHHHhCCCHHHHHHHHHHHhc
Confidence 566777743 1 12345678888888888877765555
No 52
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=39.48 E-value=57 Score=26.10 Aligned_cols=67 Identities=19% Similarity=0.187 Sum_probs=41.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHhh-cCCCcHHHHHHHHHHHHhhhhhcCccccccc
Q 023705 168 ALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKA-SMLDDSQVAEILNEISRRFVREKDEDALDEQ 242 (278)
Q Consensus 168 vLk~L~~KTGFs~~EV~RKYirY~LnEr~F~pd~VaDLi~Lrka-s~L~D~evaEiLnE~srRiv~~~G~vmmn~~ 242 (278)
+|+-|.. ...|..||-+| |.++-|+++.|+..|.-=+. --|+|...|+..-.. |+-+.||+..+-.+
T Consensus 23 Al~~Ls~-r~~s~~EL~~K-----L~~kg~~~e~Ie~vl~~l~~~g~ldD~rfA~~~v~~--~~~~~~G~~~I~~e 90 (162)
T 3dfg_A 23 ALGLLVH-REHSKKELNRK-----LQARGIEPEAAQAAVERLAGEGWQDDVRFAASVVRN--RASSGYGPLHIRAE 90 (162)
T ss_dssp HHHHHHH-SCCCHHHHHHH-----HHHTTCCHHHHHHHHHHHHHTTSCCHHHHHHHHHHH--HHTTTCCHHHHHHH
T ss_pred HHHHhhc-hhhhHHHHHHH-----HHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH--HHHccccHHHHHHH
Confidence 4444444 36777776555 56778888888887764444 446777778776432 23357888665433
No 53
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=39.31 E-value=45 Score=23.92 Aligned_cols=52 Identities=12% Similarity=0.165 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhhcCcc
Q 023705 181 EDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKDED 237 (278)
Q Consensus 181 ~EV~RKYirY~LnEr~F~pd~VaDLi~Lrkas~L~D~evaEiLnE~srRiv~~~G~v 237 (278)
.+||+.|++ ..+.++|.=-+-|+ +..-|+|=+|++.+.+|-+-.-+++....
T Consensus 7 ~~Il~~~~~----~~~~~~dvdl~~lA-~~t~G~SGADl~~l~~eAa~~a~r~~~~~ 58 (88)
T 3vlf_B 7 ANIFRIHSK----SMSVERGIRWELIS-RLCPNSTGAELRSVCTEAGMFAIRARRKV 58 (88)
T ss_dssp HHHHHHHHT----TSCBCSCCCHHHHH-HTCSSCCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHC----CCCCCCccCHHHHH-HHcCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 578887764 33443332112222 35679999999999999998888886543
No 54
>3n6q_A YGHZ aldo-keto reductase; TIM barrel, oxidoreductase; 1.80A {Escherichia coli} SCOP: c.1.7.0 PDB: 4ast_A 4aub_A*
Probab=39.23 E-value=66 Score=27.81 Aligned_cols=57 Identities=16% Similarity=0.269 Sum_probs=42.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCC--------CCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Q 023705 168 ALKGLVQKTGFSMEDVLRKYIRYALNEK--------PFNPDLVVNLIQLRKASMLDDSQVAEILNEISR 228 (278)
Q Consensus 168 vLk~L~~KTGFs~~EV~RKYirY~LnEr--------~F~pd~VaDLi~Lrkas~L~D~evaEiLnE~sr 228 (278)
.|++|..|.|-|..+|. |+|.|.-. .-+++-+.+-++.-...-||++|+++| +++.+
T Consensus 269 ~l~~iA~~~g~t~aqva---L~w~l~~~~v~~~I~g~~~~~~l~en~~a~~~~~Ls~e~~~~i-~~~~~ 333 (346)
T 3n6q_A 269 LLNEMAQQRGQSMAQMA---LSWLLKDDRVTSVLIGASRAEQLEENVQALNNLTFSTKELAQI-DQHIA 333 (346)
T ss_dssp HHHHHHHHTTCCHHHHH---HHHHTSSTTCSEEEECCSSHHHHHHHHGGGGCCCCCHHHHHHH-HHHHH
T ss_pred HHHHHHHHhCcCHHHHH---HHHHHhCCCCcEEEcCCCCHHHHHHHHhhccCCCCCHHHHHHH-HHHHh
Confidence 78999999999999997 66777643 247888888776533467999999875 44443
No 55
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=37.57 E-value=48 Score=28.09 Aligned_cols=77 Identities=14% Similarity=0.267 Sum_probs=54.0
Q ss_pred HHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHHHHHHHHHHhcCC---------CCChHHHHHHHHHHhhc----CCC
Q 023705 149 VCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEK---------PFNPDLVVNLIQLRKAS----MLD 215 (278)
Q Consensus 149 LvkSLDeyFp~gRdal~~gvLk~L~~KTGFs~~EV~RKYirY~LnEr---------~F~pd~VaDLi~Lrkas----~L~ 215 (278)
+.+.|-+.|.+ +.++++..+.|..+.|.+.. .+|..++|+.++. =|.++.+..++.+=+.. .+|
T Consensus 142 ~~~~i~~~~~~--~g~~pp~~~dl~~~l~~~~~-~~~~~l~~l~~~g~lv~l~~~~~~~~~~~~~~~~~l~~~~~~~~it 218 (258)
T 1lva_A 142 LLKDLEDKYRV--SRWQPPSFKEVAGSFNLDPS-ELEELLHYLVREGVLVKINDEFYWHRQALGEAREVIKNLASTGPFG 218 (258)
T ss_dssp HHHHHHHHHHH--HTTSCCBHHHHHHHTTCCHH-HHHHHHHHHHHTTSEEESSSSBEEEHHHHHHHHHHHHHHHTTSCBC
T ss_pred HHHHHHHHHHH--CCCCCCCHHHHHhHhCCCHH-HHHHHHHHHHHCCCEEEecCCeEEcHHHHHHHHHHHHHHHhcCCcC
Confidence 45566677754 44778889999999999754 4689999999886 36777777766544432 366
Q ss_pred cHHHHHHHHHHHHh
Q 023705 216 DSQVAEILNEISRR 229 (278)
Q Consensus 216 D~evaEiLnE~srR 229 (278)
=+|+.++|+ +||+
T Consensus 219 ~a~~Rd~lg-~SRK 231 (258)
T 1lva_A 219 LAEARDALG-SSRK 231 (258)
T ss_dssp HHHHHHHHT-CCHH
T ss_pred HHHHHHHhC-CcHH
Confidence 677777765 5554
No 56
>1p94_A Plasmid partition protein PArg; ribbon-helix-helix, dimer, DNA binding, cell cycle; NMR {Salmonella enterica} SCOP: a.43.1.3
Probab=37.38 E-value=32 Score=25.51 Aligned_cols=30 Identities=23% Similarity=0.370 Sum_probs=25.8
Q ss_pred chHHHHHHHHhCCChHHHHHHHHHHHhcCC
Q 023705 166 PPALKGLVQKTGFSMEDVLRKYIRYALNEK 195 (278)
Q Consensus 166 ~gvLk~L~~KTGFs~~EV~RKYirY~LnEr 195 (278)
+..||.+.-+.|=|+.||+|.+|+=.|.|.
T Consensus 46 h~rlK~~Aa~~g~Smsdvvreli~~~L~~~ 75 (76)
T 1p94_A 46 HTRFKAACARKGTSITDVVNQLVDNWLKEN 75 (76)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 456889999999999999999998887654
No 57
>2yfv_C SCM3, KLLA0F05115P; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140}
Probab=36.94 E-value=17 Score=27.13 Aligned_cols=25 Identities=16% Similarity=0.301 Sum_probs=20.9
Q ss_pred CCCcHHHHHH-------HHHHHHhhhhhcCcc
Q 023705 213 MLDDSQVAEI-------LNEISRRFVREKDED 237 (278)
Q Consensus 213 ~L~D~evaEi-------LnE~srRiv~~~G~v 237 (278)
.|||+||.|. |..+=+.|+.|||.+
T Consensus 17 ~lsdeevme~hk~adermK~~w~~Ii~KY~~~ 48 (63)
T 2yfv_C 17 KLSDEEVMERHKKADENMKRVWSQIIQKYESI 48 (63)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSG
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4889999877 777888899999973
No 58
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=36.83 E-value=31 Score=23.58 Aligned_cols=29 Identities=21% Similarity=0.087 Sum_probs=23.1
Q ss_pred CCChHHHHHHHHHHhhcCCCcHHHHHHHH
Q 023705 196 PFNPDLVVNLIQLRKASMLDDSQVAEILN 224 (278)
Q Consensus 196 ~F~pd~VaDLi~Lrkas~L~D~evaEiLn 224 (278)
+|+..+=..|-.+|+..|||-.|+|+.+.
T Consensus 6 ~~~~~~~~~ik~~R~~~gltq~elA~~~g 34 (78)
T 3qq6_A 6 HHHHMIGQRIKQYRKEKGYSLSELAEKAG 34 (78)
T ss_dssp --CTTHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred cCCCCccHHHHHHHHHcCCCHHHHHHHHC
Confidence 55666667888999999999999999885
No 59
>2a5y_A Apoptosis regulator CED-9; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: f.1.4.1
Probab=36.14 E-value=40 Score=28.99 Aligned_cols=62 Identities=8% Similarity=0.059 Sum_probs=41.4
Q ss_pred HHhCCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhhcCccccccc
Q 023705 174 QKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKDEDALDEQ 242 (278)
Q Consensus 174 ~KTGFs~~EV~RKYirY~LnEr~F~pd~VaDLi~Lrkas~L~D~evaEiLnE~srRiv~~~G~vmmn~~ 242 (278)
.++-....++++.||.|.|..+-+.... ..+.+=.-+++++.|+.++..+=++|....-|+.
T Consensus 27 e~~~~~~~~Lv~DYI~yrL~q~g~~~~~-------~~~~p~~~~~~~~~Lr~vgdelE~~~~~~f~~m~ 88 (204)
T 2a5y_A 27 EEPRLDIEGFVVDYFTHRIRQNGMEWFG-------APGLPSGVQPEHEMMRVMGTIFEKKHAENFETFS 88 (204)
T ss_dssp GSGGGCHHHHHHHHHHHHHHTTTCCCTT-------CBCCTTCCCHHHHHHHHHHHHHHHHTCTTHHHHH
T ss_pred ccccHhHHHHHHHHHHHHHccCCCCccc-------CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566899999999999987663100 0011113458888898888888888877665543
No 60
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=35.39 E-value=38 Score=23.24 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHH
Q 023705 200 DLVVNLIQLRKASMLDDSQVAEIL 223 (278)
Q Consensus 200 d~VaDLi~Lrkas~L~D~evaEiL 223 (278)
.+-..|-++|+..|||-.|+|+.+
T Consensus 13 ~~~~~l~~~r~~~glsq~~lA~~~ 36 (91)
T 1x57_A 13 EVGKVIQQGRQSKGLTQKDLATKI 36 (91)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 344444555555555555555554
No 61
>3h0g_D DNA-directed RNA polymerase II subunit RPB4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=35.29 E-value=66 Score=25.91 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=28.0
Q ss_pred CCChHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHhhcCCCcHHHHHHHH
Q 023705 177 GFSMEDVLRKYIRYALNEKPF-NPDLVVNLIQLRKASMLDDSQVAEILN 224 (278)
Q Consensus 177 GFs~~EV~RKYirY~LnEr~F-~pd~VaDLi~Lrkas~L~D~evaEiLn 224 (278)
+....+||+|=+.|+=+=..| |++.+..+..+-+. +|++-|++-+.|
T Consensus 48 ~~~~~~v~~kTl~Yl~~Fsk~~~~e~~~~v~~lL~~-~L~~fEia~L~N 95 (135)
T 3h0g_D 48 EIPMTDVMKKTVAYFNVFARFKTAEATYACERILGN-RFHKFERAQLGT 95 (135)
T ss_dssp CCCCTTHHHHHHHHHHTTCTTCSHHHHHHHHHHCCC-CSCHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh-cCCHHHHHHHcc
Confidence 345566777777776666666 36666666554444 666666655544
No 62
>3v0s_A Perakine reductase; AKR superfamily, oxidoreductase; HET: MLZ M3L MLY ATR; 1.77A {Rauvolfia serpentina} PDB: 3v0u_A 3v0t_A* 3uyi_A*
Probab=34.53 E-value=1e+02 Score=26.66 Aligned_cols=52 Identities=19% Similarity=0.217 Sum_probs=41.0
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHHhcCC--------CCChHHHHHHHHHHhhcCCCcHHHHHH
Q 023705 167 PALKGLVQKTGFSMEDVLRKYIRYALNEK--------PFNPDLVVNLIQLRKASMLDDSQVAEI 222 (278)
Q Consensus 167 gvLk~L~~KTGFs~~EV~RKYirY~LnEr--------~F~pd~VaDLi~Lrkas~L~D~evaEi 222 (278)
..|+.|..|.|-|..+|. |+|.|.-. .-+++-+.+-++.-. ..||++|+++|
T Consensus 246 ~~l~~ia~~~g~t~aqva---L~w~l~~~~v~~~I~g~~~~~~l~en~~a~~-~~L~~e~~~~l 305 (337)
T 3v0s_A 246 YRIEALSQKHGCTPVQLA---LAWVLHQGEDVVPIPGTTKIKNLHNNVGALK-VXLTKEDLKEI 305 (337)
T ss_dssp HHHHHHHHHTTSCHHHHH---HHHHHTTCTTBCCCCCCSCHHHHHHHHHGGG-CCCCHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHH---HHHHHhCCCCeEEEcCCCCHHHHHHHHHHhc-cCCCHHHHHHH
Confidence 689999999999999998 66777654 237888888876544 37999999875
No 63
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=34.44 E-value=1.1e+02 Score=24.14 Aligned_cols=11 Identities=0% Similarity=0.144 Sum_probs=4.4
Q ss_pred CCCcHHHHHHH
Q 023705 213 MLDDSQVAEIL 223 (278)
Q Consensus 213 ~L~D~evaEiL 223 (278)
|++=+||+++|
T Consensus 73 G~sL~eIk~~l 83 (148)
T 3gpv_A 73 GMPIQKIKQFI 83 (148)
T ss_dssp TCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 44444444333
No 64
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=34.43 E-value=40 Score=28.63 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=25.2
Q ss_pred CChHHHHHHHHHHhhcCCCcHHHHHHHHHH
Q 023705 197 FNPDLVVNLIQLRKASMLDDSQVAEILNEI 226 (278)
Q Consensus 197 F~pd~VaDLi~Lrkas~L~D~evaEiLnE~ 226 (278)
+++|.|.++|-==.--|++.|||+-||++-
T Consensus 28 ~~~eeVe~~I~klakkG~tpSqIG~iLRD~ 57 (151)
T 3u5c_N 28 LSSESVIEQIVKYARKGLTPSQIGVLLRDA 57 (151)
T ss_dssp SCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCHHHhhhHHhcc
Confidence 688999888755455899999999999985
No 65
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=34.32 E-value=16 Score=22.00 Aligned_cols=29 Identities=17% Similarity=0.127 Sum_probs=20.7
Q ss_pred CCCChHHHHHHHHHHhhcCCCcHHHHHHHH
Q 023705 195 KPFNPDLVVNLIQLRKASMLDDSQVAEILN 224 (278)
Q Consensus 195 r~F~pd~VaDLi~Lrkas~L~D~evaEiLn 224 (278)
+.++++....++.|. ..|++-.|||+.|+
T Consensus 4 ~~~~~~~~~~i~~l~-~~g~s~~~ia~~lg 32 (52)
T 1jko_C 4 RAINKHEQEQISRLL-EKGHPRQQLAIIFG 32 (52)
T ss_dssp CSSCTTHHHHHHHHH-HTTCCHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHH-HcCCCHHHHHHHHC
Confidence 356777777777774 35788888888774
No 66
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=34.13 E-value=40 Score=28.68 Aligned_cols=29 Identities=14% Similarity=0.279 Sum_probs=24.3
Q ss_pred CChHHHHHHHHHHhhcCCCcHHHHHHHHH
Q 023705 197 FNPDLVVNLIQLRKASMLDDSQVAEILNE 225 (278)
Q Consensus 197 F~pd~VaDLi~Lrkas~L~D~evaEiLnE 225 (278)
+++|.|.++|-==.--|++.|||+-||++
T Consensus 28 ~~~eev~~~i~klakkG~~pSqIG~~LRD 56 (158)
T 3j20_Q 28 YTVEEIENLVVKLRKEGYSTAMIGTILRD 56 (158)
T ss_dssp CCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCHHHhhHHHhc
Confidence 68889988875444489999999999987
No 67
>3ln3_A Dihydrodiol dehydrogenase; putative reductase, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MLY MSE NAD; 1.18A {Mus musculus} SCOP: c.1.7.1
Probab=33.93 E-value=68 Score=27.48 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=40.1
Q ss_pred CchHHHHHHHHhCCChHHHHHHHHHHHhcC------CCCChHHHHHHHHHHhhcCCCcHHHHHH
Q 023705 165 NPPALKGLVQKTGFSMEDVLRKYIRYALNE------KPFNPDLVVNLIQLRKASMLDDSQVAEI 222 (278)
Q Consensus 165 ~~gvLk~L~~KTGFs~~EV~RKYirY~LnE------r~F~pd~VaDLi~Lrkas~L~D~evaEi 222 (278)
....|++|..|.|-|..+|. |+|+|.- +.-|++-+.+-++.-. ..||++|+++|
T Consensus 238 ~~~~l~~ia~~~g~t~aqva---L~w~l~~~~~~I~g~~~~~~l~en~~~~~-~~L~~e~~~~l 297 (324)
T 3ln3_A 238 NDPVLCDVAXXNXRSPALIA---LRYLIQRGIVPLAQSFXENEMRENLQVFG-FQLSPEDMXTL 297 (324)
T ss_dssp GCHHHHHHHHHHTSCHHHHH---HHHHHHTTCEEEECCSSHHHHHHHGGGGG-CCCCHHHHHHH
T ss_pred cCHHHHHHHHhhCCCHHHHH---HHHHHhCCCEEEeCCCCHHHHHHHHhhCC-CCcCHHHHHHH
Confidence 44799999999999999998 5666654 2346777777665433 47999998765
No 68
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=33.89 E-value=43 Score=28.47 Aligned_cols=31 Identities=29% Similarity=0.303 Sum_probs=25.2
Q ss_pred CCChHHHHHHHHHHhhcCCCcHHHHHHHHHH
Q 023705 196 PFNPDLVVNLIQLRKASMLDDSQVAEILNEI 226 (278)
Q Consensus 196 ~F~pd~VaDLi~Lrkas~L~D~evaEiLnE~ 226 (278)
.+++|.|.++|-==.--|++.|||+-||++-
T Consensus 29 ~~~~eeVe~~I~klakkG~tpSqIG~iLRD~ 59 (153)
T 2xzm_O 29 HMTPSTVVDLSVKLAKKGLTPSQIGVILRDQ 59 (153)
T ss_dssp CCCHHHHHHHHHHHHHTTCCHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHCCCCHHHhhhHHhhc
Confidence 3688888888765455899999999999973
No 69
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=33.43 E-value=1.1e+02 Score=20.48 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=27.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCcHHHHHHHHH
Q 023705 170 KGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNE 225 (278)
Q Consensus 170 k~L~~KTGFs~~EV~RKYirY~LnEr~F~pd~VaDLi~Lrkas~L~D~evaEiLnE 225 (278)
++|..+.|.|..-| -+|.-..+..+.+ .+..|=+++|.+.+++.+-|-+
T Consensus 29 ~~lA~~~gvs~~~i----s~~e~g~~~~~~~---~~~~ia~~l~v~~~~l~~~l~~ 77 (80)
T 3kz3_A 29 ESVADKMGMGQSAV----AALFNGINALNAY---NAALLAKILKVSVEEFSPSIAR 77 (80)
T ss_dssp HHHHHHTTSCHHHH----HHHHTTSSCCCHH---HHHHHHHHHTSCGGGTCHHHHH
T ss_pred HHHHHHhCcCHHHH----HHHHcCCCCCCHH---HHHHHHHHhCCCHHHHhHHHHh
Confidence 35555566554322 2333345566664 4556667888888876655543
No 70
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=33.13 E-value=50 Score=27.53 Aligned_cols=13 Identities=15% Similarity=0.406 Sum_probs=6.4
Q ss_pred hcCCCcHHHHHHH
Q 023705 211 ASMLDDSQVAEIL 223 (278)
Q Consensus 211 as~L~D~evaEiL 223 (278)
..|+++++|+.++
T Consensus 85 ~~Gls~~~i~~~l 97 (270)
T 3m66_A 85 SKNFSKADVAQMV 97 (270)
T ss_dssp HTTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHH
Confidence 3455555554444
No 71
>1ohu_A Apoptosis regulator CED-9; BCL-2 family; 2.03A {Caenorhabditis elegans} SCOP: f.1.4.1 PDB: 1ty4_A
Probab=32.72 E-value=43 Score=27.91 Aligned_cols=56 Identities=9% Similarity=0.075 Sum_probs=32.7
Q ss_pred CChHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhhcCccccc
Q 023705 178 FSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKDEDALD 240 (278)
Q Consensus 178 Fs~~EV~RKYirY~LnEr~F~pd~VaDLi~Lrkas~L~D~evaEiLnE~srRiv~~~G~vmmn 240 (278)
++..++.+.||.|.|..+-+.-.. ..+++=.-+++++.|+.++..+=++|....-|
T Consensus 11 ~~~~~Lv~DYI~yrL~~~g~~~~~-------~~~~~~~~~~~~~~Lr~vgdelE~~~~~~f~~ 66 (175)
T 1ohu_A 11 LDIEGFVVDYFTHRIRQNGMEWFG-------APGLPSGVQPEHEMMRVMGTIFEKKHAENFET 66 (175)
T ss_dssp GCHHHHHHHHHHHHHHHTTCCCTT-------CCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCCCCccc-------CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999987663100 00111123466777777766666555544433
No 72
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=32.19 E-value=1e+02 Score=24.21 Aligned_cols=9 Identities=33% Similarity=0.803 Sum_probs=4.3
Q ss_pred HhCCChHHH
Q 023705 175 KTGFSMEDV 183 (278)
Q Consensus 175 KTGFs~~EV 183 (278)
+.||+.+||
T Consensus 57 ~~G~sL~eI 65 (142)
T 3gp4_A 57 RAGLSIEAL 65 (142)
T ss_dssp HTTCCHHHH
T ss_pred HcCCCHHHH
Confidence 445555444
No 73
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=32.18 E-value=63 Score=27.15 Aligned_cols=62 Identities=6% Similarity=-0.093 Sum_probs=49.7
Q ss_pred hhhHHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHHHH---HHHHHHhcCCCCChHHHHHHHHH
Q 023705 146 NAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLR---KYIRYALNEKPFNPDLVVNLIQL 208 (278)
Q Consensus 146 NamLvkSLDeyFp~gRdal~~gvLk~L~~KTGFs~~EV~R---KYirY~LnEr~F~pd~VaDLi~L 208 (278)
...+.+-|.+.+.+.+-.++.++++.|...+|-++..+.. |..-|. .++..|.+.|.+++.-
T Consensus 144 ~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~-~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 144 QAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLW-PDGKLTLPRVEQAVND 208 (343)
T ss_dssp TTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHC-TTCEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhc-CCCCCCHHHHHHHHhh
Confidence 4567888889998888889999999999999999887654 666664 4667888888877654
No 74
>2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237, structural GENO PSI, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=32.13 E-value=68 Score=25.39 Aligned_cols=34 Identities=15% Similarity=0.159 Sum_probs=25.2
Q ss_pred hHHHHHHHHH-HhhcCCCcHHHHHHHHHHHHhhhh
Q 023705 199 PDLVVNLIQL-RKASMLDDSQVAEILNEISRRFVR 232 (278)
Q Consensus 199 pd~VaDLi~L-rkas~L~D~evaEiLnE~srRiv~ 232 (278)
|..+...+.. ....|++++++..|+.+-++|+|.
T Consensus 220 ~~~~~~~~~~l~~~~~~~~~~~~~i~~~Na~rl~~ 254 (265)
T 2gzx_A 220 PARVTLVAEQIAELKGLSYEEVCEQTTKNAEKLFN 254 (265)
T ss_dssp GGGHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Confidence 4445444432 334799999999999999999985
No 75
>2vof_A BCL-2-related protein A1; BH3, apoptosis, Pro-surviVal, mitochondrion, protein- complex; 1.8A {Mus musculus} PDB: 2vog_A 2voh_A* 2voi_A 3i1h_A 3mqp_A 2vm6_A
Probab=32.09 E-value=57 Score=26.24 Aligned_cols=17 Identities=24% Similarity=0.628 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhcCCCC
Q 023705 181 EDVLRKYIRYALNEKPF 197 (278)
Q Consensus 181 ~EV~RKYirY~LnEr~F 197 (278)
..+.+.||.|.|++..+
T Consensus 15 ~~L~~Dyi~y~l~~~~~ 31 (157)
T 2vof_A 15 HSLAEHYLQYVLQVPAF 31 (157)
T ss_dssp HHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHCCCCC
Confidence 46889999999998776
No 76
>4hv0_A AVTR; ribbon-helix-helix, DNA, transcription, viral protein; 2.60A {Acidianus filamentous virus 6}
Probab=31.44 E-value=47 Score=26.92 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=25.3
Q ss_pred chHHHHHHHHhCCChHHHHHHHHHHHhc
Q 023705 166 PPALKGLVQKTGFSMEDVLRKYIRYALN 193 (278)
Q Consensus 166 ~gvLk~L~~KTGFs~~EV~RKYirY~Ln 193 (278)
...|+.|+.+-|-|...++||+|+=+|+
T Consensus 10 Y~~LkelAe~EGvSvSav~RkLL~EyL~ 37 (106)
T 4hv0_A 10 YEFLKKKAKEEGTSVPAVIRKILKEYFG 37 (106)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 4679999999999999999999987776
No 77
>3n2t_A Putative oxidoreductase; aldo/keto reductase superfamily, AKR, AKR11B4, TIM barrel; 2.00A {Gluconobacter oxydans} SCOP: c.1.7.0
Probab=31.33 E-value=54 Score=28.65 Aligned_cols=59 Identities=22% Similarity=0.318 Sum_probs=43.7
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHHhcCCCC--------ChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhh
Q 023705 167 PALKGLVQKTGFSMEDVLRKYIRYALNEKPF--------NPDLVVNLIQLRKASMLDDSQVAEILNEISRRFV 231 (278)
Q Consensus 167 gvLk~L~~KTGFs~~EV~RKYirY~LnEr~F--------~pd~VaDLi~Lrkas~L~D~evaEiLnE~srRiv 231 (278)
..|++|..|.|-|..+|. |+|.|.- .. +++-+.+-++.-. .-|+++|+++ |+++.+++.
T Consensus 267 ~~l~~iA~~~g~t~aqva---L~w~l~~-~v~~~I~g~~~~~~l~enl~a~~-~~L~~e~~~~-l~~~~~~~~ 333 (348)
T 3n2t_A 267 DEFEKLAEKRGKSVMAFA---VRWVLDQ-GPVIALWGARKPGQVSGVKDVFG-WSLTDEEKKA-VDDILARHV 333 (348)
T ss_dssp HHHHHHHHHTTCCHHHHH---HHHHHTT-TTEEEEEECSSGGGGTTHHHHSS-CCCCHHHHHH-HHHHHHHHS
T ss_pred HHHHHHHHHhCCCHHHHH---HHHHHHC-CCcEEEeCCCCHHHHHHHHHHhC-CCCCHHHHHH-HHHHHHHhc
Confidence 478899999999999998 5666665 43 7888887776433 3799999876 466666553
No 78
>1us0_A Aldose reductase; oxidoreductase, NADP, IDD594; HET: NDP LDT CIT; 0.66A {Homo sapiens} SCOP: c.1.7.1 PDB: 1pwl_A* 1t41_A* 1pwm_A* 1x96_A* 1x97_A* 1x98_A* 1z89_A* 1z8a_A* 2dux_A* 2duz_A* 2dv0_A* 2fz8_A* 2fz9_A* 2fzb_A* 2fzd_A* 2hv5_A* 2hvn_A* 2hvo_A* 2i16_A* 2i17_A* ...
Probab=31.08 E-value=72 Score=27.30 Aligned_cols=55 Identities=18% Similarity=0.405 Sum_probs=41.2
Q ss_pred CCchHHHHHHHHhCCChHHHHHHHHHHHhcC------CCCChHHHHHHHHHHhhcCCCcHHHHHH
Q 023705 164 VNPPALKGLVQKTGFSMEDVLRKYIRYALNE------KPFNPDLVVNLIQLRKASMLDDSQVAEI 222 (278)
Q Consensus 164 l~~gvLk~L~~KTGFs~~EV~RKYirY~LnE------r~F~pd~VaDLi~Lrkas~L~D~evaEi 222 (278)
+....|+++..|.|-|..+|. |+|+|.- +.-+++-+.+-++.-. ..||++|+++|
T Consensus 229 ~~~~~l~~ia~~~g~s~aqva---L~w~l~~~~~~I~g~~~~~~l~en~~~~~-~~L~~e~~~~l 289 (316)
T 1us0_A 229 LEDPRIKAIAAKHNKTTAQVL---IRFPMQRNLVVIPKSVTPERIAENFKVFD-FELSSQDMTTL 289 (316)
T ss_dssp TTCHHHHHHHHHHTCCHHHHH---HHHHHHTTCEECCBCCCHHHHHHHHCCSS-CCCCHHHHHHH
T ss_pred ccCHHHHHHHHHhCCCHHHHH---HHHHHHCCCEEEeCCCCHHHHHHHhhhcC-CCCCHHHHHHH
Confidence 456899999999999999997 5666765 3356777777765432 46999998866
No 79
>3eau_A Voltage-gated potassium channel subunit beta-2; kvbeta, cortisone, NADPH, cytoplasm, ION transport, ionic channel, NADP, phosphoprotein; HET: NDP PDN; 1.82A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2r9r_A* 2a79_A* 3lnm_A* 1exb_A* 3eb4_A* 3eb3_A* 1qrq_A* 1zsx_A*
Probab=30.96 E-value=1.1e+02 Score=25.97 Aligned_cols=53 Identities=21% Similarity=0.362 Sum_probs=39.3
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHHhcCCCC--------ChHHHHHHHHHHhh-cCCCcHHHHHH
Q 023705 167 PALKGLVQKTGFSMEDVLRKYIRYALNEKPF--------NPDLVVNLIQLRKA-SMLDDSQVAEI 222 (278)
Q Consensus 167 gvLk~L~~KTGFs~~EV~RKYirY~LnEr~F--------~pd~VaDLi~Lrka-s~L~D~evaEi 222 (278)
..|+.|..|.|-|..+|. |+|.|.-... +++-+.+-++.-.. --||++|+++|
T Consensus 256 ~~l~~ia~~~g~s~aqva---L~w~l~~~~v~~vI~g~~~~~~l~en~~a~~~~~~L~~e~~~~i 317 (327)
T 3eau_A 256 KELQAIAERLGCTLPQLA---IAWCLRNEGVSSVLLGASNAEQLMENIGAIQVLPKLSSSIVHEI 317 (327)
T ss_dssp HHHHHHHHHHTSCHHHHH---HHHHHSSTTCCEEEECCSSHHHHHHHHGGGGGGGGCCHHHHHHH
T ss_pred HHHHHHHHHhCcCHHHHH---HHHHHhCCCCceEEeCCCCHHHHHHHHHHhccCCCCCHHHHHHH
Confidence 678899999999999997 6677765333 67777776654322 26999999876
No 80
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=30.84 E-value=91 Score=20.91 Aligned_cols=58 Identities=14% Similarity=0.219 Sum_probs=35.0
Q ss_pred hhHHHHHhcCCCCCCchHHHHHHHHhCCChHHHHHHHHHHHhcCC--CCChHHHHHHHHHHhhcCCCcHHH
Q 023705 151 KTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEK--PFNPDLVVNLIQLRKASMLDDSQV 219 (278)
Q Consensus 151 kSLDeyFp~gRdal~~gvLk~L~~KTGFs~~EV~RKYirY~LnEr--~F~pd~VaDLi~Lrkas~L~D~ev 219 (278)
+.|.+.+..-|... ..++|..++|.+.. ||.-..|-+ ..+ +..|..|=+++|++-+++
T Consensus 15 ~~~g~~l~~~R~~~---sq~~lA~~~gis~~-----~is~~E~g~~~~p~---~~~l~~ia~~l~v~~~~l 74 (86)
T 2ofy_A 15 QRLGELLRSARGDM---SMVTVAFDAGISVE-----TLRKIETGRIATPA---FFTIAAVARVLDLSLDDV 74 (86)
T ss_dssp HHHHHHHHHHHTTS---CHHHHHHHHTCCHH-----HHHHHHTTCCSSCB---HHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHC---CHHHHHHHhCCCHH-----HHHHHHcCCCCCCC---HHHHHHHHHHhCCCHHHH
Confidence 44555555544444 46799999999854 333333433 344 345667778888886654
No 81
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=30.77 E-value=1e+02 Score=21.38 Aligned_cols=51 Identities=20% Similarity=0.269 Sum_probs=32.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCC----CChHHHHHHHHHHhhcCCCcHHHHHHHH
Q 023705 169 LKGLVQKTGFSMEDVLRKYIRYALNEKP----FNPDLVVNLIQLRKASMLDDSQVAEILN 224 (278)
Q Consensus 169 Lk~L~~KTGFs~~EV~RKYirY~LnEr~----F~pd~VaDLi~Lrkas~L~D~evaEiLn 224 (278)
+++|.++.|.|..-|= ..||.++ .++++..-+.+.=+.+|...+.++..|+
T Consensus 3 ~~diA~~aGVS~sTVS-----rvLng~~~~~~vs~et~~rI~~aa~~lgY~pn~~a~~l~ 57 (65)
T 1uxc_A 3 LDEIARLAGVSRTTAS-----YVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLR 57 (65)
T ss_dssp HHHHHHHHTSCHHHHH-----HHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC-------
T ss_pred HHHHHHHHCcCHHHHH-----HHHcCCCCCCCCCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 5789999999966554 4677664 8888887777776777777766665553
No 82
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=30.53 E-value=5.7 Score=31.07 Aligned_cols=56 Identities=11% Similarity=-0.008 Sum_probs=44.0
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhhhhhcCc----cccccchhhhhhcccCCccchhhhhhhcc
Q 023705 208 LRKASMLDDSQVAEILNEISRRFVREKDE----DALDEQPPMQALFVFDPVHNICCFLHMKW 265 (278)
Q Consensus 208 Lrkas~L~D~evaEiLnE~srRiv~~~G~----vmmn~~~avqalf~~~~~~~~~~~~~~~~ 265 (278)
++.-.++++++.++++.++++.+.+-.|- +|+.+....+-.||-.. .-|||++.+.
T Consensus 26 i~tnv~~s~~~~~~l~~~ls~~la~~lgKPe~~v~V~~~~~~~m~fgGs~--dP~a~v~v~s 85 (133)
T 3fwt_A 26 TIVSVSLDDQKRANLSAAYGMICREELGKPEDFVMTAFSDKTPISFQGST--APAAYVRVES 85 (133)
T ss_dssp EEESSCCCHHHHHHHHHHHHHHHHHHHSCTTCCCEEEEECSCCCCBTTBC--SSCEEEEEEE
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHHhCcCcCEEEEEEECCceEEECCCC--CCeEEEEEEE
Confidence 44455788899999999999999988775 78888888888888754 5688877654
No 83
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=30.15 E-value=46 Score=23.91 Aligned_cols=46 Identities=20% Similarity=0.151 Sum_probs=25.6
Q ss_pred hhhhhhcchhhHHhhHHHHHhcC--CCCCCchHHHHHHHHhCCChHHH
Q 023705 138 KRKKLVNKNAMVCKTIDELFQKG--GDAVNPPALKGLVQKTGFSMEDV 183 (278)
Q Consensus 138 KRkR~VNKNamLvkSLDeyFp~g--Rdal~~gvLk~L~~KTGFs~~EV 183 (278)
+|++...-...-++.|.++|... .--.+...-..|..+||.+...|
T Consensus 7 ~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV 54 (83)
T 2dmn_A 7 GKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQI 54 (83)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHh
Confidence 33444444555566666666553 23355556666666666666555
No 84
>3h0g_D DNA-directed RNA polymerase II subunit RPB4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=30.03 E-value=55 Score=26.40 Aligned_cols=76 Identities=21% Similarity=0.195 Sum_probs=51.5
Q ss_pred hcchhhHHhhHHHHHhc---CCCCCCchHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChHHHHHHHH-HH-hhcCCCcH
Q 023705 143 VNKNAMVCKTIDELFQK---GGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQ-LR-KASMLDDS 217 (278)
Q Consensus 143 VNKNamLvkSLDeyFp~---gRdal~~gvLk~L~~KTGFs~~EV~RKYirY~LnEr~F~pd~VaDLi~-Lr-kas~L~D~ 217 (278)
.+-|..+-++++ |+.+ ..+.-+...++.+..+ |++-.||.- +.|=.|=|.|.+--||. |. + ++|+
T Consensus 49 ~~~~~v~~kTl~-Yl~~Fsk~~~~e~~~~v~~lL~~-~L~~fEia~-----L~NL~P~t~dEak~LIpsL~~r---~~de 118 (135)
T 3h0g_D 49 IPMTDVMKKTVA-YFNVFARFKTAEATYACERILGN-RFHKFERAQ-----LGTLCCEDAEEARTLIPSLANK---IDDQ 118 (135)
T ss_dssp CCCTTHHHHHHH-HHHTTCTTCSHHHHHHHHHHCCC-CSCHHHHHH-----HHHHCCCCHHHHHHHCGGGTTT---SCSH
T ss_pred cchhHHHHHHHH-HHHHccCCCCHHHHHHHHHHHHh-cCCHHHHHH-----HccCCCCCHHHHHHHHHHhccc---CCHH
Confidence 444555555554 5444 2233344455665555 888888853 67878888888888887 32 3 7999
Q ss_pred HHHHHHHHHHH
Q 023705 218 QVAEILNEISR 228 (278)
Q Consensus 218 evaEiLnE~sr 228 (278)
++.+||.+++.
T Consensus 119 ~L~~IL~~l~~ 129 (135)
T 3h0g_D 119 NLQGILDELST 129 (135)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 85
>3o3r_A Aldo-keto reductase family 1, member B7; aldose reductase like protein, AKR1B14, oxidoreductase; HET: NAP; 1.86A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 3qkz_A*
Probab=29.96 E-value=77 Score=27.10 Aligned_cols=55 Identities=24% Similarity=0.360 Sum_probs=39.5
Q ss_pred CCchHHHHHHHHhCCChHHHHHHHHHHHhcC------CCCChHHHHHHHHHHhhcCCCcHHHHHH
Q 023705 164 VNPPALKGLVQKTGFSMEDVLRKYIRYALNE------KPFNPDLVVNLIQLRKASMLDDSQVAEI 222 (278)
Q Consensus 164 l~~gvLk~L~~KTGFs~~EV~RKYirY~LnE------r~F~pd~VaDLi~Lrkas~L~D~evaEi 222 (278)
+....|++|..|.|-|..+|. |+|.|.- +.-+++-+.+-++.- ...||++|+++|
T Consensus 229 ~~~~~l~~ia~~~g~t~aqva---L~w~l~~~~~vi~g~~~~~~l~en~~a~-~~~L~~ee~~~l 289 (316)
T 3o3r_A 229 LEIPKIKEIAAKHKKTIAQVL---IRFHVQRNVAVIPKSVTLSHIKENIQVF-DFQLSEEDMAAI 289 (316)
T ss_dssp TTCHHHHHHHHHHTCCHHHHH---HHHHHTTTCEECCBCCSHHHHHHHTCCS-SCCCCHHHHHHH
T ss_pred hcCHHHHHHHHHhCCCHHHHH---HHHHHhCCCEEeCCCCCHHHHHHHHhhC-CCCcCHHHHHHH
Confidence 455799999999999999997 5666653 234666666655432 236899998765
No 86
>3izc_t 60S acidic ribosomal protein RPP11 (P1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_t
Probab=29.95 E-value=11 Score=29.73 Aligned_cols=11 Identities=18% Similarity=0.453 Sum_probs=0.0
Q ss_pred hhhHHHHhcch
Q 023705 66 EVEVEVEEELP 76 (278)
Q Consensus 66 e~e~e~e~e~~ 76 (278)
|++||.+++|.
T Consensus 91 e~~EEsddDmG 101 (106)
T 3izc_t 91 EAKEESDDDMG 101 (106)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 34444555664
No 87
>4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596}
Probab=29.81 E-value=36 Score=28.52 Aligned_cols=55 Identities=13% Similarity=-0.004 Sum_probs=38.3
Q ss_pred HHHHHHHHHh--hcCCCcHHHHHHHHHHHHhhh-------hhcCccccccchhhhhhcccCCcc
Q 023705 201 LVVNLIQLRK--ASMLDDSQVAEILNEISRRFV-------REKDEDALDEQPPMQALFVFDPVH 255 (278)
Q Consensus 201 ~VaDLi~Lrk--as~L~D~evaEiLnE~srRiv-------~~~G~vmmn~~~avqalf~~~~~~ 255 (278)
.+|=|+++.+ --.|+-+||.++|...|+++- ..||-=++|...|+|+|-+..+..
T Consensus 233 ~~All~s~~~~~~p~~t~~~v~~~L~~tA~~~~~~~~~~~~~~G~G~ln~~~Av~~~~~~~~~~ 296 (306)
T 4h6w_A 233 VAALLLSLQIKRGEKPDPQKVKNALLASATPCNPKDTDDQSRCLMGKLNILDAIEHLTGETMSE 296 (306)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCCTTTCSCGGGGTTCBCCHHHHHHHHSSCC---
T ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHhhCccCCCCCCCCCCCcceeecCHHHHHHHHHCCCCCC
Confidence 4444444432 256889999999999998763 246766899999999998876554
No 88
>3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B*
Probab=29.76 E-value=64 Score=31.19 Aligned_cols=62 Identities=21% Similarity=0.460 Sum_probs=39.3
Q ss_pred hcCCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHH------HhhhhhcCcccccc----chhhhhhcccCC
Q 023705 192 LNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEIS------RRFVREKDEDALDE----QPPMQALFVFDP 253 (278)
Q Consensus 192 LnEr~F~pd~VaDLi~Lrkas~L~D~evaEiLnE~s------rRiv~~~G~vmmn~----~~avqalf~~~~ 253 (278)
+.+-+++|+.+++||.|=..=-+|..-+.++|.+.. .-|+++||...+.- +.+|+.....+|
T Consensus 362 i~~~~i~p~~la~li~li~~g~Is~~~ak~vl~~~~~~~~~p~eIVee~gL~qisD~~el~~iV~evI~~np 433 (478)
T 3h0l_B 362 IEESPVKPEHLAELVKLIKEKVISTKIGKEVIKEMVETGKTPSQIVEEKGLKQITDENQIKELVKKIFEKHP 433 (478)
T ss_dssp GGGCSSCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHCCCHHHHHHHHCC---------------------
T ss_pred HhhcCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCCHHHHHHHcCCccCCCHHHHHHHHHHHHHhCh
Confidence 456789999999999999998999999999987664 57999999987752 355665554444
No 89
>1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.1.9.12
Probab=29.59 E-value=60 Score=26.06 Aligned_cols=23 Identities=9% Similarity=-0.032 Sum_probs=20.4
Q ss_pred hhcCCCcHHHHHHHHHHHHhhhh
Q 023705 210 KASMLDDSQVAEILNEISRRFVR 232 (278)
Q Consensus 210 kas~L~D~evaEiLnE~srRiv~ 232 (278)
...|++++++++++.+-++|+|.
T Consensus 239 ~~~g~~~e~~~~~~~~Na~rl~~ 261 (264)
T 1xwy_A 239 HWRGEDAAWLAATTDANVKTLFG 261 (264)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHC
T ss_pred HHHCcCHHHHHHHHHHHHHHHhC
Confidence 34599999999999999999984
No 90
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=29.56 E-value=48 Score=29.03 Aligned_cols=52 Identities=13% Similarity=0.149 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhhcCccc
Q 023705 181 EDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKDEDA 238 (278)
Q Consensus 181 ~EV~RKYirY~LnEr~F~pd~VaDLi~Lrkas~L~D~evaEiLnE~srRiv~~~G~vm 238 (278)
.++++.-+|-+.+=+|-+.+.+| ++.|.+-++|..+|.+..--.|++-|.||
T Consensus 21 ~~~~~~llr~la~Grpv~~~~LA------~~~g~~~~~v~~~L~~l~~~~~D~~G~Iv 72 (220)
T 3f2g_A 21 ADLLVPLLRELAKGRPVSRTTLA------GILDWPAERVAAVLEQATSTEYDKDGNII 72 (220)
T ss_dssp HHHHHHHHHHHTTTSCBCHHHHH------HHHTCCHHHHHHHHHHCTTCEECTTSCEE
T ss_pred hHHHHHHHHHHhcCCCCCHHHHH------HHhCcCHHHHHHHHHhCCcEEECCCCCEE
Confidence 35677777777788888888665 68899999999999999876777777663
No 91
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=28.99 E-value=45 Score=29.35 Aligned_cols=76 Identities=17% Similarity=0.121 Sum_probs=53.9
Q ss_pred HhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChHHHHHHHH-HHhhcCCCcHHHHHHHHHHH
Q 023705 150 CKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQ-LRKASMLDDSQVAEILNEIS 227 (278)
Q Consensus 150 vkSLDeyFp~gRdal~~gvLk~L~~KTGFs~~EV~RKYirY~LnEr~F~pd~VaDLi~-Lrkas~L~D~evaEiLnE~s 227 (278)
-.-|+|||..+--..-...+++|. ..+-.-+++++=|-.+|.-+.=+.+.+++|++ |.+..-+|.+++...+.+..
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~--~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~ 91 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELA--SPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEIL 91 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTC--CGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC--CcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 346889998864433334445553 22237789988889898876656688999886 88888899999988776543
No 92
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=28.98 E-value=1.1e+02 Score=19.20 Aligned_cols=48 Identities=19% Similarity=0.184 Sum_probs=23.3
Q ss_pred HHHHHHHhCCChHHHHH------HHHHHHhcCCCCChHHHHHHHHHHhhcCCCcHHH
Q 023705 169 LKGLVQKTGFSMEDVLR------KYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQV 219 (278)
Q Consensus 169 Lk~L~~KTGFs~~EV~R------KYirY~LnEr~F~pd~VaDLi~Lrkas~L~D~ev 219 (278)
|+.+..+.|+|..|+-+ .+|.-..+-+.-.+.. +..|-+++|.+.+++
T Consensus 6 l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~---l~~la~~l~~~~~~l 59 (69)
T 1r69_A 6 VKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTKRPRF---LPELASALGVSVDWL 59 (69)
T ss_dssp HHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSCSSCTT---HHHHHHHTTCCHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCchH---HHHHHHHHCcCHHHH
Confidence 34444444444444432 2344444444332222 666777777765544
No 93
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=28.98 E-value=1.7e+02 Score=25.51 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=34.1
Q ss_pred HHHHHHhcCCCCChHHHHHHHH-HHhhcCCCcHHHHHHHHHHHHhhhhhcC
Q 023705 186 KYIRYALNEKPFNPDLVVNLIQ-LRKASMLDDSQVAEILNEISRRFVREKD 235 (278)
Q Consensus 186 KYirY~LnEr~F~pd~VaDLi~-Lrkas~L~D~evaEiLnE~srRiv~~~G 235 (278)
+-|+-+|-|.-++++.+.+++. +|. .+.+ +.++|.|.-.+++....
T Consensus 49 ~~l~~~L~~~dv~~~~~~~~~~~~~~---~~~~-~~~~~~~~l~~~l~~~~ 95 (306)
T 1vma_A 49 EELEELLIQADVGVETTEYILERLEE---KDGD-ALESLKEIILEILNFDT 95 (306)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHTT---CCSC-HHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHh---cCHH-HHHHHHHHHHHHhCCCC
Confidence 3456678899999999999985 555 5555 88888888777775433
No 94
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=28.88 E-value=2.4e+02 Score=23.16 Aligned_cols=57 Identities=16% Similarity=0.225 Sum_probs=40.0
Q ss_pred hHHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHH---HHHHHHHHhcCCCCChHHHHHHH
Q 023705 148 MVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDV---LRKYIRYALNEKPFNPDLVVNLI 206 (278)
Q Consensus 148 mLvkSLDeyFp~gRdal~~gvLk~L~~KTGFs~~EV---~RKYirY~LnEr~F~pd~VaDLi 206 (278)
.+.+-|.+++.+.+-.++..+++.|...+|=+.-++ +++.+.|. .+..+.+.|.+++
T Consensus 182 ~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~~--~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG--DGQVSTQAVSAML 241 (373)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHHHT--TTCBCHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhc--CCcccHHHHHHHh
Confidence 455666677776666789999999999998887654 45555554 4567777776554
No 95
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=28.70 E-value=1.2e+02 Score=24.53 Aligned_cols=95 Identities=12% Similarity=0.131 Sum_probs=57.0
Q ss_pred hcCChhhhhhhhhcc--hhhHHhhHHHHHhcCCCCCCc-----hHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChHHHH
Q 023705 131 KFNSPKFKRKKLVNK--NAMVCKTIDELFQKGGDAVNP-----PALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVV 203 (278)
Q Consensus 131 K~~SPraKRkR~VNK--NamLvkSLDeyFp~gRdal~~-----gvLk~L~~KTGFs~~EV~RKYirY~LnEr~F~pd~Va 203 (278)
+-.|-+-=|.|+..| +...++.+=++|...+= +|- .-++.-.++.|++ +..|++.|..|-.+.+.++
T Consensus 31 r~~S~~EL~~KL~~kg~~~~~ie~vl~~L~~~g~-ldD~rfA~~~vr~~~~~~~~G-----~~~I~~eL~~KGI~~~~I~ 104 (177)
T 3e3v_A 31 QLRTRKEVEDKLRSLDIHEDYISEIINKLIDLDL-INDKNYAESYVRTMMNTSDKG-----PKVIKLNLSKKGIDDNIAE 104 (177)
T ss_dssp SCCCHHHHHTTSGGGTCCHHHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHHHCCCC-----HHHHHHHHHTTTCCHHHHH
T ss_pred ccccHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHccccc-----HHHHHHHHHHcCCCHHHHH
Confidence 345555555555554 33445544444443322 332 2233344444565 4678889999999999888
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHhhhhhcCc
Q 023705 204 NLIQLRKASMLDDSQVAEILNEISRRFVREKDE 236 (278)
Q Consensus 204 DLi~Lrkas~L~D~evaEiLnE~srRiv~~~G~ 236 (278)
+.+. .+++++--+.+.+.+++-++.+..
T Consensus 105 ~al~-----~~~~~de~e~a~~l~~Kk~~~~~~ 132 (177)
T 3e3v_A 105 DALI-----LYTDKLQVEKGVTLAEKLANRYSH 132 (177)
T ss_dssp HHHT-----TSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHH-----hCCchhHHHHHHHHHHHHHhhccC
Confidence 8763 356666667778888887777654
No 96
>2c35_A Human RPB4, DNA-directed RNA polymerase II 16 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: a.60.8.2
Probab=28.62 E-value=60 Score=26.48 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=33.8
Q ss_pred HHhCCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhhc
Q 023705 174 QKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREK 234 (278)
Q Consensus 174 ~KTGFs~~EV~RKYirY~LnEr~F~pd~VaDLi~Lrkas~L~D~evaEiLnE~srRiv~~~ 234 (278)
.+.|++-.|+.. ..|=.|=|.|.+--||.-=+ -.++|+|+.+||.+++. |+++
T Consensus 98 ~~~~L~~~E~a~-----L~NL~P~t~dEar~lipsl~-~r~sdEeLe~ILd~l~k--~r~f 150 (152)
T 2c35_A 98 LQKKLHKFELAC-----LANLCPETAEESKALIPSLE-GRFEDEELQQILDDIQT--KRSF 150 (152)
T ss_dssp HTSSCCHHHHHH-----HHHHCCSSHHHHHHHCGGGT-TTSCHHHHHHHHHHHHH--HCCC
T ss_pred HhcCCCHHHHHH-----hccCCCCCHHHHHHHHHhhc-cCCCHHHHHHHHHHHHH--HHhh
Confidence 344555555543 45666666666655554333 25899999999999987 4444
No 97
>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14
Probab=28.61 E-value=1.1e+02 Score=25.04 Aligned_cols=26 Identities=4% Similarity=-0.116 Sum_probs=18.7
Q ss_pred HHHHhhhhhcCccccccc----------hhhhhhcc
Q 023705 225 EISRRFVREKDEDALDEQ----------PPMQALFV 250 (278)
Q Consensus 225 E~srRiv~~~G~vmmn~~----------~avqalf~ 250 (278)
+...+++++|++++-+.- .++|.+.+
T Consensus 86 ~~~~~~l~~~~~ll~~~~~~~~~q~~lL~ale~~~~ 121 (189)
T 1paq_A 86 DAVVKVFNQWGLLFKRQAFDEEEYIDLMNIIMEKIV 121 (189)
T ss_dssp HHHHHHHHHHGGGGGGTCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 455677888888877654 67777776
No 98
>3ij6_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structure initiative; 2.00A {Lactobacillus acidophilus}
Probab=28.42 E-value=42 Score=28.79 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=21.2
Q ss_pred hcCCCcHHHHHHHHHHHHhhhhh
Q 023705 211 ASMLDDSQVAEILNEISRRFVRE 233 (278)
Q Consensus 211 as~L~D~evaEiLnE~srRiv~~ 233 (278)
.++|++++.+.|+.+-++|+|++
T Consensus 283 ~l~l~~~~~~~i~~~NA~rl~~~ 305 (312)
T 3ij6_A 283 DLTISDKDKQKIFHDNYYSLIKE 305 (312)
T ss_dssp TSSSCHHHHHHHHTHHHHHHHCC
T ss_pred HcCCCHHHHHHHHHHHHHHHHhC
Confidence 45999999999999999999986
No 99
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=28.07 E-value=1.8e+02 Score=25.33 Aligned_cols=66 Identities=12% Similarity=-0.037 Sum_probs=40.9
Q ss_pred CchHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChHHHHHHH----HHHhhcCCCcHHHHHHHHH-HHHhhh
Q 023705 165 NPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLI----QLRKASMLDDSQVAEILNE-ISRRFV 231 (278)
Q Consensus 165 ~~gvLk~L~~KTGFs~~EV~RKYirY~LnEr~F~pd~VaDLi----~Lrkas~L~D~evaEiLnE-~srRiv 231 (278)
-.+.++.++.+.||+.+|...+..||+.++-.=--+.....+ ..-..+++++ ++.+.|.+ +.+||-
T Consensus 103 ~~~iv~~lae~~~~~~ee~~~~i~~~l~~~~~~~~~aFk~a~~~~~~~l~~~~i~~-~~~~~l~~~~~~~~~ 173 (266)
T 3cw2_C 103 LDKILELVSQKLKLSEKDAWEQVAWKLEAKYGDPITAIEKAVKEGEKILIDAGVPE-IWVKPLLEEASKHAE 173 (266)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHTHHHHHTTSSCHHHHHHHHHHHCSHHHHTTTCCS-TTHHHHHHHHHHHHH
T ss_pred cceeeeehhhhCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCchhhhhcCCCH-HHHHHHHHHHHHhCC
Confidence 367888888999999999888877887644322233333333 2445567774 45555544 444453
No 100
>1pyf_A IOLS protein; beta-alpha barrel, aldo-keto reductase, TIM barrel, oxidoreductase; 1.80A {Bacillus subtilis} SCOP: c.1.7.1 PDB: 1pz0_A*
Probab=27.79 E-value=96 Score=26.31 Aligned_cols=52 Identities=13% Similarity=0.272 Sum_probs=39.0
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHHhcCC--------CCChHHHHHHHHHHhhcCCCcHHHHHH
Q 023705 167 PALKGLVQKTGFSMEDVLRKYIRYALNEK--------PFNPDLVVNLIQLRKASMLDDSQVAEI 222 (278)
Q Consensus 167 gvLk~L~~KTGFs~~EV~RKYirY~LnEr--------~F~pd~VaDLi~Lrkas~L~D~evaEi 222 (278)
..|+.+..|.|-|..+|. |+|.|.-. .-+++-+.+-++.-. ..||++|+++|
T Consensus 246 ~~l~~ia~~~g~s~aqva---L~w~l~~~~v~~~I~g~~~~~~l~en~~a~~-~~L~~~~~~~l 305 (312)
T 1pyf_A 246 NKLAPIAEKHNVDIPHIV---LAWYLARPEIDILIPGAKRADQLIDNIKTAD-VTLSQEDISFI 305 (312)
T ss_dssp HTTHHHHHHTTSCHHHHH---HHHHHHSTTCCCBCCCCSSHHHHHHHHGGGG-CCCCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHH---HHHHHhCCCCeEEEeCCCCHHHHHHHHhhcc-CCCCHHHHHHH
Confidence 467889999999999998 56666553 236888888776543 37999998865
No 101
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=27.75 E-value=21 Score=25.12 Aligned_cols=58 Identities=17% Similarity=0.272 Sum_probs=40.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHH-Hh-----cC----CCCChHHHHHH---HHHHhhcCCCcHHHHHHHHHHH
Q 023705 169 LKGLVQKTGFSMEDVLRKYIRY-AL-----NE----KPFNPDLVVNL---IQLRKASMLDDSQVAEILNEIS 227 (278)
Q Consensus 169 Lk~L~~KTGFs~~EV~RKYirY-~L-----nE----r~F~pd~VaDL---i~Lrkas~L~D~evaEiLnE~s 227 (278)
..++.+.+|-|. .-+|.|-+- .| ++ |-|+++.|..| ..||+..|++-+||+++|+..+
T Consensus 8 i~e~A~~~gvs~-~tlR~ye~~~gl~~p~r~~~~g~R~Y~~~dl~~l~~I~~l~~~~G~sl~ei~~~l~~~~ 78 (81)
T 2jml_A 8 IRTIARMTGIRE-ATLRAWERRYGFPRPLRSEGNNYRVYSREEVEAVRRVARLIQEEGLSVSEAIAQVKTEP 78 (81)
T ss_dssp HHHHHHTTSTTH-HHHHHHHHHTCCSCCBSSSCSSSCEECHHHHHHHHHHHHHHHHTSTHHHHHHHHHHHSC
T ss_pred HHHHHHHHCcCH-HHHHHHHHhCCCCCCcCCCCCCeeecCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHccC
Confidence 356777778764 456777773 43 22 44888888776 4455578999999999998654
No 102
>3up8_A Putative 2,5-diketo-D-gluconic acid reductase B; nysgrc, PSI-biology, structural genomics; 1.96A {Sinorhizobium meliloti}
Probab=27.66 E-value=85 Score=27.19 Aligned_cols=52 Identities=15% Similarity=0.252 Sum_probs=39.9
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHHhcC-------CCCChHHHHHHHHHHhhcCCCcHHHHHH
Q 023705 167 PALKGLVQKTGFSMEDVLRKYIRYALNE-------KPFNPDLVVNLIQLRKASMLDDSQVAEI 222 (278)
Q Consensus 167 gvLk~L~~KTGFs~~EV~RKYirY~LnE-------r~F~pd~VaDLi~Lrkas~L~D~evaEi 222 (278)
..|+++..|.|-|..+|. |+|.|.- +.-+++-+.+-++.-. ..||++|+++|
T Consensus 218 ~~l~~ia~~~g~s~aqva---L~w~l~~p~v~~I~g~~~~~~l~en~~a~~-~~L~~ee~~~l 276 (298)
T 3up8_A 218 PLLTEIGGRHGKTAAQVA---LRWLVQQQDVIVLSKTATEARLKENFAIFD-FALTREEMAAV 276 (298)
T ss_dssp HHHHHHHHHHTCCHHHHH---HHHHHTSTTEEEEECCCSHHHHHHHHCCSS-CCCCHHHHHHH
T ss_pred chHHHHHHHcCCCHHHHH---HHHHHHCCCcEEEECCCCHHHHHHHHHhCC-CCCCHHHHHHH
Confidence 689999999999999998 6677765 3457777777665432 37999999865
No 103
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=27.54 E-value=91 Score=26.10 Aligned_cols=83 Identities=14% Similarity=0.227 Sum_probs=54.0
Q ss_pred HHHHHhcCCCCCCchHHHHHHHH----------------hCCChHHHHHHHHHHHhcCCCCChHHHHHHHH-HHhhcCCC
Q 023705 153 IDELFQKGGDAVNPPALKGLVQK----------------TGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQ-LRKASMLD 215 (278)
Q Consensus 153 LDeyFp~gRdal~~gvLk~L~~K----------------TGFs~~EV~RKYirY~LnEr~F~pd~VaDLi~-Lrkas~L~ 215 (278)
|-+|=...+..++...++.|... ...|..|+-+| |..+.|+++.|+.+|+ |..-=-||
T Consensus 35 l~~~~L~kg~el~~e~~~~i~~~~~~~~a~~~Al~~Ls~r~~S~~EL~~K-----L~~kg~~~e~i~~vl~~L~~~g~ld 109 (221)
T 3d5l_A 35 LIQFRLMKGTELDEKQIAAIATADQQAKAYSRMLDYLSYQMRTESDIVKK-----LKEIDTPEEFVEPILKKLRGQQLID 109 (221)
T ss_dssp HHHTTCCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHH-----HHHTTCCHHHHHHHHHHHHHTTCCC
T ss_pred HHHcCCcCCCCCCHHHHHHHHHhHHHHHHHHHHHHHhccccccHHHHHHH-----HHhcCCCHHHHHHHHHHHHHcCCCC
Confidence 33443345556777776666532 34566665444 5567899999999887 66666789
Q ss_pred cHHHHHHHHHHHHhh-hhhcCccccccc
Q 023705 216 DSQVAEILNEISRRF-VREKDEDALDEQ 242 (278)
Q Consensus 216 D~evaEiLnE~srRi-v~~~G~vmmn~~ 242 (278)
|+..|+..-.. |+ .+.||+..+-.+
T Consensus 110 D~rfA~~~v~~--~~~~~~~G~~~I~~e 135 (221)
T 3d5l_A 110 DHAYAASYVRT--MINTDLKGPGIIRQH 135 (221)
T ss_dssp HHHHHHHHHHH--HHHHCCCCHHHHHHH
T ss_pred HHHHHHHHHHH--HHHhccccHHHHHHH
Confidence 99999876542 33 367888766443
No 104
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=27.48 E-value=1.3e+02 Score=25.44 Aligned_cols=84 Identities=12% Similarity=0.076 Sum_probs=50.5
Q ss_pred hHHHHHHHHhCC---ChHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCC-----------------------------
Q 023705 167 PALKGLVQKTGF---SMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASML----------------------------- 214 (278)
Q Consensus 167 gvLk~L~~KTGF---s~~EV~RKYirY~LnEr~F~pd~VaDLi~Lrkas~L----------------------------- 214 (278)
-..+.|.++.|| +..+++|..-++++.. .++++..+.+..+-..+.+
T Consensus 24 Tla~~la~~lg~~~~d~g~~~r~~~~~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g~~v~~~ir~~~v~~ 102 (233)
T 3r20_A 24 SVSRGLARALGARYLDTGAMYRIATLAVLRA-GADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAGEDVSSEIRGDAVTG 102 (233)
T ss_dssp HHHHHHHHHHTCEEEEHHHHHHHHHHHHHHH-TCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETTEECTTGGGSHHHHH
T ss_pred HHHHHHHHHhCCCcccCCcHHHHHHHHHHHc-CCCchhhHHHHHHHHhCCEEEeecCCCcEEEECCeehhhhhcchHHHH
Confidence 345667777774 6788888877776654 3444333333333222211
Q ss_pred ------CcHHHHHHHHHHHHhhhhhcCccccccchhhhhhccc
Q 023705 215 ------DDSQVAEILNEISRRFVREKDEDALDEQPPMQALFVF 251 (278)
Q Consensus 215 ------~D~evaEiLnE~srRiv~~~G~vmmn~~~avqalf~~ 251 (278)
.+.+|-+.|.+.-+.+.++.|.+||+=..+--.+|..
T Consensus 103 ~~s~va~~~~vr~~l~~~qr~~a~~~~~~V~~GRd~gt~V~pd 145 (233)
T 3r20_A 103 AVSAVSAVPAVRTRLVDIQRKLATEGGRVVVEGRDIGTVVLPD 145 (233)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTSSSCEEEEESSCCCCCCTT
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHhcCcEEEecccceeEEcCC
Confidence 1345669999999998887577888766444445543
No 105
>3izc_v 60S acidic ribosomal protein (P2); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_v
Probab=27.48 E-value=13 Score=29.33 Aligned_cols=11 Identities=18% Similarity=0.416 Sum_probs=0.0
Q ss_pred hhhHHHHhcch
Q 023705 66 EVEVEVEEELP 76 (278)
Q Consensus 66 e~e~e~e~e~~ 76 (278)
|++||.+++|.
T Consensus 91 e~~EEsdddmG 101 (106)
T 3izc_v 91 EAAEESDDDMG 101 (106)
T ss_dssp -----------
T ss_pred ccccccccccC
Confidence 33444455554
No 106
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=27.44 E-value=1e+02 Score=22.24 Aligned_cols=52 Identities=8% Similarity=0.008 Sum_probs=31.9
Q ss_pred CchHHHHHHHHhCCChHHHHH------HHHHHHhcCCCCChHHHHHHHHHHhhcCCCcHHH
Q 023705 165 NPPALKGLVQKTGFSMEDVLR------KYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQV 219 (278)
Q Consensus 165 ~~gvLk~L~~KTGFs~~EV~R------KYirY~LnEr~F~pd~VaDLi~Lrkas~L~D~ev 219 (278)
+..-|+.+..+.|+|..|+-+ .||.-..+-+..+ +..|..|=++++.+-+|+
T Consensus 25 ~~~rLk~lR~~~glTq~eLA~~~GiS~~tis~iE~G~~~s---~~~l~kIa~~L~v~~~~L 82 (88)
T 3t76_A 25 SYNKLWKLLIDRDMKKGELREAVGVSKSTFAKLGKNENVS---LTVLLAICEYLNCDFGDI 82 (88)
T ss_dssp ECHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCCC---HHHHHHHHHHHTCCGGGT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCcC---HHHHHHHHHHHCcCHHHH
Confidence 344566666666666666554 3566566665544 455666677888876654
No 107
>1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.1.9.12
Probab=27.26 E-value=48 Score=27.23 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=20.5
Q ss_pred hhcCCCcHHHHHHHHHHHHhhhh
Q 023705 210 KASMLDDSQVAEILNEISRRFVR 232 (278)
Q Consensus 210 kas~L~D~evaEiLnE~srRiv~ 232 (278)
...|++++++++|+.+-++|+|.
T Consensus 242 ~~~~~~~e~~~~i~~~Na~rlf~ 264 (268)
T 1j6o_A 242 QVLGVPEAKVDEATTENARRIFL 264 (268)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHhCcCHHHHHHHHHHHHHHHhC
Confidence 33599999999999999999986
No 108
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=27.11 E-value=1.5e+02 Score=20.27 Aligned_cols=35 Identities=20% Similarity=0.229 Sum_probs=21.0
Q ss_pred HHhcCCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Q 023705 190 YALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISR 228 (278)
Q Consensus 190 Y~LnEr~F~pd~VaDLi~Lrkas~L~D~evaEiLnE~sr 228 (278)
|--.++..+. ..|+.|=+++|.+| ++.+.+.+..+
T Consensus 47 ~E~G~~~p~~---~~l~~ia~~l~v~~-~~~~l~~~~~~ 81 (86)
T 3eus_A 47 VETRERRLDV---IEFAKWMAACEGLD-VVSEIVATIAE 81 (86)
T ss_dssp HHTTSSCCBH---HHHHHHHHHTTCGG-GHHHHHHHHHH
T ss_pred HHCCCCCCCH---HHHHHHHHHcCCCc-HHHHHHHHHHh
Confidence 3334444444 55677778999855 56666665543
No 109
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=26.75 E-value=56 Score=22.26 Aligned_cols=40 Identities=10% Similarity=0.230 Sum_probs=23.8
Q ss_pred hcchhhHHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHH
Q 023705 143 VNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDV 183 (278)
Q Consensus 143 VNKNamLvkSLDeyFp~gRdal~~gvLk~L~~KTGFs~~EV 183 (278)
..-...-++.|.++|..+.- .+......|..++|-+...|
T Consensus 12 t~ft~~q~~~Le~~F~~~~y-p~~~~r~~LA~~l~l~~~qV 51 (70)
T 2da1_A 12 TRITDDQLRVLRQYFDINNS-PSEEQIKEMADKSGLPQKVI 51 (70)
T ss_dssp CCCCHHHHHHHHHHHHHCSS-CCTTHHHHHHHHHCCCHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCC-CCHHHHHHHHHHhCCCHHHH
Confidence 34445555666666666543 55556666777777666555
No 110
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=26.50 E-value=1e+02 Score=19.92 Aligned_cols=12 Identities=0% Similarity=-0.197 Sum_probs=5.3
Q ss_pred HHHHhhcCCCcH
Q 023705 206 IQLRKASMLDDS 217 (278)
Q Consensus 206 i~Lrkas~L~D~ 217 (278)
..|-.++|++-+
T Consensus 54 ~~ia~~l~~~~~ 65 (78)
T 3b7h_A 54 RKVCGTLGISVH 65 (78)
T ss_dssp HHHHHHHTCCHH
T ss_pred HHHHHHcCCCHH
Confidence 334445555433
No 111
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=26.30 E-value=1.2e+02 Score=21.04 Aligned_cols=60 Identities=12% Similarity=0.166 Sum_probs=32.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHh-hcCCCcHHHHHHHHHHH
Q 023705 168 ALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRK-ASMLDDSQVAEILNEIS 227 (278)
Q Consensus 168 vLk~L~~KTGFs~~EV~RKYirY~LnEr~F~pd~VaDLi~Lrk-as~L~D~evaEiLnE~s 227 (278)
.++-.++..|=.....-...|.+.+.+-.|++|.|.-+++-=. .-.++-.=|..||+.=.
T Consensus 6 l~~~~e~~~gr~ls~~e~~~i~~w~~~~~~~~elI~~A~~~a~~~~~~s~~Yi~~Il~~W~ 66 (78)
T 2zc2_A 6 LVEDFERELGRMLSPFELEDLQKTVSDDKTDPDLVRSALREAVFNGKTNWNYIQAILRNWR 66 (78)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 4445555556333333356777777777788887765543211 12334444556665543
No 112
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=26.25 E-value=65 Score=22.14 Aligned_cols=40 Identities=8% Similarity=0.027 Sum_probs=23.9
Q ss_pred cchhhHHhhHHHHHhcC--CCCCCchHHHHHHHHhCCChHHH
Q 023705 144 NKNAMVCKTIDELFQKG--GDAVNPPALKGLVQKTGFSMEDV 183 (278)
Q Consensus 144 NKNamLvkSLDeyFp~g--Rdal~~gvLk~L~~KTGFs~~EV 183 (278)
.-...-++.|.++|..+ ---.+...-..|..++|.+...|
T Consensus 13 ~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV 54 (73)
T 1x2n_A 13 VLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQV 54 (73)
T ss_dssp CCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 44555566666667542 22355666667777777666555
No 113
>3al0_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=26.22 E-value=69 Score=30.98 Aligned_cols=49 Identities=20% Similarity=0.357 Sum_probs=40.8
Q ss_pred CCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHH------HhhhhhcCccccccc
Q 023705 194 EKPFNPDLVVNLIQLRKASMLDDSQVAEILNEIS------RRFVREKDEDALDEQ 242 (278)
Q Consensus 194 Er~F~pd~VaDLi~Lrkas~L~D~evaEiLnE~s------rRiv~~~G~vmmn~~ 242 (278)
+-+++|+.+++||+|=..=-+|..-++++|.+.. .-|+++||+..+.-+
T Consensus 368 ~~~i~p~~la~li~li~~g~Is~~~ak~vl~~~~~~~~~p~~IIe~~gl~qiSDe 422 (482)
T 3al0_B 368 ESKLTPQHFADLFKLMDEGKISIKIAKEIFPEVFETGKMPSQIVEEKGLTQINDE 422 (482)
T ss_dssp SSSCCHHHHHHHHHHHTTTSSCTTHHHHSHHHHHHHCCCHHHHHHHHTCCCCCCS
T ss_pred hcCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCCHHHHHHHhCCccCCcH
Confidence 4489999999999998888899999998888764 458999999877543
No 114
>3f7j_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.70A {Bacillus subtilis} PDB: 3d3f_A*
Probab=26.11 E-value=76 Score=26.84 Aligned_cols=55 Identities=16% Similarity=0.324 Sum_probs=39.5
Q ss_pred CCchHHHHHHHHhCCChHHHHHHHHHHHhcC------CCCChHHHHHHHHHHhhcCCCcHHHHHH
Q 023705 164 VNPPALKGLVQKTGFSMEDVLRKYIRYALNE------KPFNPDLVVNLIQLRKASMLDDSQVAEI 222 (278)
Q Consensus 164 l~~gvLk~L~~KTGFs~~EV~RKYirY~LnE------r~F~pd~VaDLi~Lrkas~L~D~evaEi 222 (278)
++.+.|+++..|.|-|..+|. |+|.|.. +.-+++-+.+-++.-. ..||++|+++|
T Consensus 198 ~~~~~l~~ia~~~g~t~aqva---l~w~l~~~~v~i~g~~~~~~l~en~~a~~-~~L~~e~~~~l 258 (276)
T 3f7j_A 198 LDNEVLTQIAEKHNKSVAQVI---LRWDLQHGVVTIPKSIKEHRIIENADIFD-FELSQEDMDKI 258 (276)
T ss_dssp TTCHHHHHHHHHHTCCHHHHH---HHHHHHTTCEECCBCCSHHHHHHHTCCSS-CCCCHHHHHHH
T ss_pred CCCHHHHHHHHHhCCCHHHHH---HHHHHhCCCEEeeCCCCHHHHHHHHhhCC-CCCCHHHHHHH
Confidence 456899999999999999998 5566654 2346666666654322 36999998765
No 115
>2ckz_A DNA-directed RNA polymerase III 18 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=25.82 E-value=25 Score=29.20 Aligned_cols=48 Identities=15% Similarity=0.246 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHhcCCC--------------------------CChHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Q 023705 181 EDVLRKYIRYALNEKP--------------------------FNPDLVVNLIQLRKASMLDDSQVAEILNEISR 228 (278)
Q Consensus 181 ~EV~RKYirY~LnEr~--------------------------F~pd~VaDLi~Lrkas~L~D~evaEiLnE~sr 228 (278)
..|+++.+.|+-+=.. .+++.+.+|+..-+..+|+..|+.-|+|-.=.
T Consensus 56 ~ti~~e~~~YL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~l~~~L~~~~Ltk~E~lqivNl~P~ 129 (161)
T 2ckz_A 56 QGITRNVVNYLSINKNFINQEDEGEERESSGAKDAEKSGISKMSDESFAELMTKLNSFKLFKAEKLQIVNQLPA 129 (161)
T ss_dssp HHHHHHHHHHHTC-------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCCccccccccccccccccccccccccccccCHHHHHHHHHHHHhcCCCHHHHHHHhccCCC
Confidence 3577777777765544 44677777777667778888888777775543
No 116
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=25.72 E-value=1.2e+02 Score=27.87 Aligned_cols=76 Identities=17% Similarity=0.186 Sum_probs=54.9
Q ss_pred HHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHHHHHHHHHHhcCC-CCChHHHHHHH-HHHhhcCCCcHHHHHHHHHH
Q 023705 149 VCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEK-PFNPDLVVNLI-QLRKASMLDDSQVAEILNEI 226 (278)
Q Consensus 149 LvkSLDeyFp~gRdal~~gvLk~L~~KTGFs~~EV~RKYirY~LnEr-~F~pd~VaDLi-~Lrkas~L~D~evaEiLnE~ 226 (278)
+-.-|+|||..+--..-..-+++|. ..+---|++++=|-.+|..+ .=+.+.+.+|+ +|.+...||.+|+...+.++
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~--~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELE--VPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC--CTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHcc--CCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3456889998864444444555554 34556799999999999654 23457788888 59999999999998887654
No 117
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=25.52 E-value=1.5e+02 Score=23.37 Aligned_cols=66 Identities=14% Similarity=0.190 Sum_probs=40.5
Q ss_pred chHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChH-----HHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhh
Q 023705 166 PPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPD-----LVVNLIQLRKASMLDDSQVAEILNEISRRFVRE 233 (278)
Q Consensus 166 ~gvLk~L~~KTGFs~~EV~RKYirY~LnEr~F~pd-----~VaDLi~Lrkas~L~D~evaEiLnE~srRiv~~ 233 (278)
+-.++++...+|.+..||-|-|- +.+++-.|+.. --.=+..+=..+||++ ++.+.-.++.++..++
T Consensus 69 p~~l~di~~~~~v~~~~i~~~~~-~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~-~v~~~A~~i~~~~~~~ 139 (200)
T 1ais_B 69 PRTLDEIADIARVDKKEIGRSYR-FIARNLNLTPKKLFVKPTDYVNKFADELGLSE-KVRRRAIEILDEAYKR 139 (200)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHH-HHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCH-HHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHH-HHHHHhcccCCcCCCCHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHc
Confidence 44677888889999988877654 45555555522 2222344556778875 4555555566555554
No 118
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20
Probab=25.50 E-value=1.2e+02 Score=23.30 Aligned_cols=74 Identities=5% Similarity=0.282 Sum_probs=45.4
Q ss_pred hCCChHH---HHHHHHHHH------hc--CCCCChHHHHHHHHH-HhhcCCC--cHHHHHHHHHHHHhhhh--hcCcccc
Q 023705 176 TGFSMED---VLRKYIRYA------LN--EKPFNPDLVVNLIQL-RKASMLD--DSQVAEILNEISRRFVR--EKDEDAL 239 (278)
Q Consensus 176 TGFs~~E---V~RKYirY~------Ln--Er~F~pd~VaDLi~L-rkas~L~--D~evaEiLnE~srRiv~--~~G~vmm 239 (278)
.||+.+| |.++||.=. |. +=.|+.|++.++|.- -+-+|.- +-+++.|.+-.+++|+. +..++.+
T Consensus 1 sGYt~~EK~~IAk~~LiPkql~~~GL~~~~~~i~d~al~~iI~~YTREaGVRnLer~i~~i~RK~a~~i~~~~~~~~v~v 80 (94)
T 1qzm_A 1 SGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEI 80 (94)
T ss_dssp CCCCHHHHHHHHHHTHHHHHHHHTTCCTTTEEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHTCTTCCCEEE
T ss_pred CCCCHHHHHHHHHHhccHHHHHHhCCChhhceECHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHcCCCCCeeE
Confidence 3777765 777777532 32 334678888888862 1122322 34899999999999995 4445555
Q ss_pred ccchhhhhhcc
Q 023705 240 DEQPPMQALFV 250 (278)
Q Consensus 240 n~~~avqalf~ 250 (278)
+.+ .++-+.|
T Consensus 81 ~~~-~l~~~LG 90 (94)
T 1qzm_A 81 NGD-NLHDYLG 90 (94)
T ss_dssp CTT-TTHHHHC
T ss_pred CHH-HHHHHcC
Confidence 543 3344444
No 119
>1xkp_A Putative membrane-bound YOP targeting protein YOP; YOPN, type III secretion, SYCN, membrane PR chaperon complex; HET: MLY; 1.70A {Yersinia pestis} SCOP: a.243.1.3 PDB: 1xl3_A*
Probab=25.44 E-value=1.9e+02 Score=25.42 Aligned_cols=65 Identities=14% Similarity=0.126 Sum_probs=48.0
Q ss_pred hhHHhhHHHHHhcCCCCCCchHHHHHHHHh--CCCh-HHHHHHHHHHHhcCCCC-Ch-HHHHHHHHHHhhcCCCc
Q 023705 147 AMVCKTIDELFQKGGDAVNPPALKGLVQKT--GFSM-EDVLRKYIRYALNEKPF-NP-DLVVNLIQLRKASMLDD 216 (278)
Q Consensus 147 amLvkSLDeyFp~gRdal~~gvLk~L~~KT--GFs~-~EV~RKYirY~LnEr~F-~p-d~VaDLi~Lrkas~L~D 216 (278)
..+.|.+++|+.+..|.-....++.|...- +-.+ .++++.|+.- -| || |.+.=|-+|+++.+.+.
T Consensus 50 ~~~~e~~~~y~e~~~d~e~~qkl~~l~~~L~~~~~~~~~~L~~~l~~-----f~~DpSd~~laL~~ll~~~~~~p 119 (246)
T 1xkp_A 50 SDVEEQVNQYLSXVPELEQXQNVSELLSLLSNSPNISLSQLXAYLEG-----XSEEPSEQFXMLCGLRDALXGRP 119 (246)
T ss_dssp HHHHHHHHHHHTTSCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHH-----HCSCHHHHHHHHHHHHHHHHSCG
T ss_pred hHHHHHHHHHHHhccchhhHHHHHHHHHHHhcCCcccHHHHHHHHhc-----cCCChHHHHHHHHHHHHHhcCCc
Confidence 348899999999999987888888888864 6545 8999998752 23 33 45555666677777876
No 120
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=25.25 E-value=1.3e+02 Score=19.42 Aligned_cols=17 Identities=18% Similarity=0.210 Sum_probs=9.4
Q ss_pred HHHHHHHhhcCCCcHHH
Q 023705 203 VNLIQLRKASMLDDSQV 219 (278)
Q Consensus 203 aDLi~Lrkas~L~D~ev 219 (278)
..+..|-+++|.+-+++
T Consensus 53 ~~l~~la~~l~~~~~~l 69 (77)
T 2b5a_A 53 INIHKICAALDIPASTF 69 (77)
T ss_dssp HHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHhCcCHHHH
Confidence 34555556666665443
No 121
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=25.18 E-value=53 Score=21.15 Aligned_cols=25 Identities=12% Similarity=0.004 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHHH
Q 023705 200 DLVVNLIQLRKASMLDDSQVAEILN 224 (278)
Q Consensus 200 d~VaDLi~Lrkas~L~D~evaEiLn 224 (278)
+.-.+++.|+-.-|+|..|||+.|+
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~lg 42 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVCG 42 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHC
Confidence 3445677777778888888888875
No 122
>3ezq_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} SCOP: a.77.1.2 PDB: 1ddf_A
Probab=25.09 E-value=33 Score=27.48 Aligned_cols=74 Identities=16% Similarity=0.155 Sum_probs=46.6
Q ss_pred hHHHHHhcCCCCCCchHHHHHHHHhCCChHHHH---HHHH-------------HHHhcCCCCChHHHHHHHHHHhhcCCC
Q 023705 152 TIDELFQKGGDAVNPPALKGLVQKTGFSMEDVL---RKYI-------------RYALNEKPFNPDLVVNLIQLRKASMLD 215 (278)
Q Consensus 152 SLDeyFp~gRdal~~gvLk~L~~KTGFs~~EV~---RKYi-------------rY~LnEr~F~pd~VaDLi~Lrkas~L~ 215 (278)
.|.+||+.=-+.|.....|.++++.|||-.+|= ..|- ||- +.=..++|.+||.==+.++|
T Consensus 6 dl~~~i~~Iae~m~~~~wK~laR~LGlse~~Id~I~~d~~~d~~Eq~~qlLr~W~~---~~G~~aa~~~Li~aLr~~~l- 81 (115)
T 3ezq_A 6 DLSKYITTIAGVMTLSQVKGFVRKNGVNEAKIDEIKNDNVQDTAEQKVQLLRNWHQ---LHGKKEAYDTLIKDLKKANL- 81 (115)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHT---TSCHHHHHHHHHHHHHHHHH-
T ss_pred cHHHHHHHHHHHcCHHHHHHHHHHcCCCHhhHHHHHHcCCCChHHHHHHHHHHHHH---HhCcccHHHHHHHHHHHccc-
Confidence 377889988888999999999999999977653 3331 222 11134578888753333333
Q ss_pred cHHHHHHHHHHHHhh
Q 023705 216 DSQVAEILNEISRRF 230 (278)
Q Consensus 216 D~evaEiLnE~srRi 230 (278)
..+||.+.++-.+.
T Consensus 82 -~~~Ad~Iq~~l~~~ 95 (115)
T 3ezq_A 82 -CTLAEKIQTIILKD 95 (115)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHH
Confidence 23555555544433
No 123
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=25.09 E-value=69 Score=21.37 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=11.6
Q ss_pred HHHHHhhcCCCcHHHHHHHH
Q 023705 205 LIQLRKASMLDDSQVAEILN 224 (278)
Q Consensus 205 Li~Lrkas~L~D~evaEiLn 224 (278)
|-++|+..|||-.|+|+.+.
T Consensus 17 l~~~r~~~glsq~~lA~~~g 36 (88)
T 2wiu_B 17 MKLVRQQNGWTQSELAKKIG 36 (88)
T ss_dssp HHHHHHHTTCCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHhC
Confidence 44556666666666666553
No 124
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=25.08 E-value=2.6e+02 Score=22.24 Aligned_cols=59 Identities=15% Similarity=0.207 Sum_probs=41.6
Q ss_pred hHHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChHHHHHHH
Q 023705 148 MVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLI 206 (278)
Q Consensus 148 mLvkSLDeyFp~gRdal~~gvLk~L~~KTGFs~~EV~RKYirY~LnEr~F~pd~VaDLi 206 (278)
.+.+-|.+++.+.+-.++..+++.|...+|=+..++..--=.+++..+..+.+.|.+++
T Consensus 165 ~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~i~~~~v~~~~ 223 (319)
T 2chq_A 165 AMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQIT 223 (319)
T ss_dssp HHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHSSSCBCHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45566777777767779999999999999988877654333344445667777776543
No 125
>3rgc_A Possible periplasmic protein; ppiase, chaperone; 2.30A {Campylobacter jejuni}
Probab=24.94 E-value=2.2e+02 Score=23.16 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=15.3
Q ss_pred hHHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHHHHHHHH
Q 023705 148 MVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIR 189 (278)
Q Consensus 148 mLvkSLDeyFp~gRdal~~gvLk~L~~KTGFs~~EV~RKYir 189 (278)
.|-+.|+++..+++ ++...++..-.+.|+|.++ ||.+||
T Consensus 56 ev~~~i~~~~~~~~--~s~~~~~~~L~~~g~t~~~-~~~~ir 94 (252)
T 3rgc_A 56 ELDDAINKMLAQNK--TTLNAFKANLKSKNQSYEQ-FRTNFK 94 (252)
T ss_dssp HHHHHHHHHHHHTT--CCHHHHHHHTCC---CHHH-HHHHHH
T ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHHHcCCCHHH-HHHHHH
Confidence 33444444433332 3445555554555555433 344333
No 126
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=24.94 E-value=39 Score=23.89 Aligned_cols=36 Identities=17% Similarity=0.262 Sum_probs=24.5
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHhhhhh--cCccccc
Q 023705 204 NLIQLRKASMLDDSQVAEILNEISRRFVRE--KDEDALD 240 (278)
Q Consensus 204 DLi~Lrkas~L~D~evaEiLnE~srRiv~~--~G~vmmn 240 (278)
.|-.+|+..|||-.|+|+.|. +++.-+.+ .|....+
T Consensus 34 ~lk~~R~~~glsq~elA~~lg-vs~~~is~~E~G~~~p~ 71 (99)
T 2ppx_A 34 RIKIIRRALKLTQEEFSARYH-IPLGTLRDWEQGRSEPD 71 (99)
T ss_dssp HHHHHHHHTTCCHHHHHHHHT-CCHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHcCCCHHHHHHHhC-cCHHHHHHHHcCCCCCC
Confidence 567889999999999999885 44444443 3544333
No 127
>1ng6_A Hypothetical protein YQEY; structural genomics, domain GATB/YQEY, PFAM02637, DUF186, PSI, protein structure initiative; 1.40A {Bacillus subtilis} SCOP: a.182.1.1
Probab=24.82 E-value=2.1e+02 Score=22.85 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=27.3
Q ss_pred cCCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHH---HH-----------hhhhhcCccccccc
Q 023705 193 NEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEI---SR-----------RFVREKDEDALDEQ 242 (278)
Q Consensus 193 nEr~F~pd~VaDLi~Lrkas~L~D~evaEiLnE~---sr-----------Riv~~~G~vmmn~~ 242 (278)
++.+++++.+++||++-. .+-.|++.+. .| -|+++|||-.+.-+
T Consensus 41 ~~~~lt~~~l~~li~~~~------K~~ke~~~~~~~~gr~dl~~~e~~e~~iie~~~~~qlsd~ 98 (148)
T 1ng6_A 41 KKDSLTEDEELTVLSREL------KQRKDSLQEFSNANRLDLVDKVQKELDILEVYLPEQLSEE 98 (148)
T ss_dssp TSSCCCHHHHHHHHHHHH------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHGGGSCCCCCHH
T ss_pred CCCCCCHHHHHHHHHHHH------HHHHHHHHHHHHcCCcccchhhhHHHHHHHHhCcccCCHH
Confidence 346888888888887654 2333333222 21 58889998776543
No 128
>4gac_A Alcohol dehydrogenase [NADP(+)]; TIM barrel, aldheyde reductase AKR1A4, SMAR1, oxidoreductase; HET: FLC; 1.64A {Mus musculus} PDB: 2alr_A 3h4g_A* 3cv7_A* 3fx4_A* 1ae4_A* 1cwn_A* 1hqt_A*
Probab=24.81 E-value=79 Score=26.75 Aligned_cols=59 Identities=20% Similarity=0.442 Sum_probs=39.2
Q ss_pred CCchHHHHHHHHhCCChHHHHHHHHHHHhcCC------CCChHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Q 023705 164 VNPPALKGLVQKTGFSMEDVLRKYIRYALNEK------PFNPDLVVNLIQLRKASMLDDSQVAEILNEIS 227 (278)
Q Consensus 164 l~~gvLk~L~~KTGFs~~EV~RKYirY~LnEr------~F~pd~VaDLi~Lrkas~L~D~evaEiLnE~s 227 (278)
....+|+.|.+|.|-|..+|. |+|.|.-. .-+++-+.+-++.- -.-||++|+++| +++.
T Consensus 228 ~~~~~l~~iA~~~g~t~aqva---L~w~l~~~~v~I~G~~~~~~l~eN~~a~-~~~Ls~ee~~~i-d~l~ 292 (324)
T 4gac_A 228 LEEPVVLALAEKHGRSPAQIL---LRWQVQRKVICIPKSINPSRILQNIQVF-DFTFSPEEMKQL-DALN 292 (324)
T ss_dssp GGCHHHHHHHHHHTCCHHHHH---HHHHHHTTCEECCBCCCHHHHHHHTCCS-SCCCCHHHHHHH-HTTC
T ss_pred hhHHHHHHHHHHhCCCHHHHH---HHHHHHCCCEEEECCCCHHHHHHHHhhC-CCCCCHHHHHHH-hccC
Confidence 445689999999999999997 56666532 23455555544321 135999999776 4443
No 129
>3g46_A Globin-1; oxygen transport, allostery, oxygen affinity, cytoplasm, heme, iron, metal-binding, oxygen storage/transport, oxygen binding; HET: HEM; 0.91A {Scapharca inaequivalvis} SCOP: a.1.1.2 PDB: 1nxf_A* 3g4q_A* 3g4r_A* 3g4u_A* 3g4v_A* 3g4w_A* 3g4y_A* 3g52_A* 3g53_A* 3uhg_A* 3uhs_A* 3uhk_A* 3uhi_A* 3uhn_A* 3ugy_A* 2auo_A* 2aup_A* 3uhr_A* 3uh5_A* 3uh3_A* ...
Probab=24.77 E-value=1.1e+02 Score=23.24 Aligned_cols=56 Identities=9% Similarity=0.078 Sum_probs=36.0
Q ss_pred hHHhhHHHHHhcCCC-CCCchHHHHHHH---HhCCChH--HHHHHHHHHHhcCCCCChHHHH
Q 023705 148 MVCKTIDELFQKGGD-AVNPPALKGLVQ---KTGFSME--DVLRKYIRYALNEKPFNPDLVV 203 (278)
Q Consensus 148 mLvkSLDeyFp~gRd-al~~gvLk~L~~---KTGFs~~--EV~RKYirY~LnEr~F~pd~Va 203 (278)
.|+.+|+++..+=.+ +.-.+.|+.|.. +.|.+.+ +++...|-.+|.|..|||+.-+
T Consensus 72 ~v~~al~~~v~~ldd~~~l~~~l~~l~~~H~~~~V~p~~f~~~~~~ll~~l~~~~~t~e~~~ 133 (146)
T 3g46_A 72 TLMYALQNFIDQLDNPDDLVCVVEKFAVNHITRKISAAEFGKINGPIKKVLASKNFGDKYAN 133 (146)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCCHHHHGGGHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 356677777666322 113356667766 5587776 5677777777777789987543
No 130
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=24.69 E-value=40 Score=25.75 Aligned_cols=36 Identities=31% Similarity=0.180 Sum_probs=22.5
Q ss_pred HHHHhcCCCCChHHHHHHHHHHhhcCC-CcHHHHHHHHHHHH
Q 023705 188 IRYALNEKPFNPDLVVNLIQLRKASML-DDSQVAEILNEISR 228 (278)
Q Consensus 188 irY~LnEr~F~pd~VaDLi~Lrkas~L-~D~evaEiLnE~sr 228 (278)
||.+|+|.. += .+-.|++++|| +|.|+.-+|-=.+|
T Consensus 15 VW~~L~~~~--~~---s~~el~k~t~l~~d~el~lAiGWLaR 51 (77)
T 2l01_A 15 IWEALNGTE--GL---TQKQIKKATKLKADKDFFLGLGWLLR 51 (77)
T ss_dssp HHHHHTTSS--CE---EHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCC--CC---CHHHHHHHHCCCCHHHHHHHHHHHhh
Confidence 466777742 22 23356778888 88887777655554
No 131
>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP: c.1.9.12
Probab=24.63 E-value=47 Score=26.62 Aligned_cols=23 Identities=9% Similarity=0.059 Sum_probs=20.5
Q ss_pred hhcCCCcHHHHHHHHHHHHhhhh
Q 023705 210 KASMLDDSQVAEILNEISRRFVR 232 (278)
Q Consensus 210 kas~L~D~evaEiLnE~srRiv~ 232 (278)
...|++.+++++++.+-++|+|.
T Consensus 235 ~~~g~~~e~~~~~~~~Na~rl~~ 257 (259)
T 1zzm_A 235 ELRREPADEIAQALLNNTYTLFN 257 (259)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHC
T ss_pred HHHCcCHHHHHHHHHHHHHHHhC
Confidence 45699999999999999999984
No 132
>1vp5_A 2,5-diketo-D-gluconic acid reductase; TM1009, structural genomics, joint center for structural genomics, PSI, protein structure initiative; HET: NAP; 2.40A {Thermotoga maritima} SCOP: c.1.7.1
Probab=24.60 E-value=90 Score=27.04 Aligned_cols=54 Identities=17% Similarity=0.305 Sum_probs=40.2
Q ss_pred CchHHHHHHHHhCCChHHHHHHHHHHHhcC------CCCChHHHHHHHHHHhhcCCCcHHHHHH
Q 023705 165 NPPALKGLVQKTGFSMEDVLRKYIRYALNE------KPFNPDLVVNLIQLRKASMLDDSQVAEI 222 (278)
Q Consensus 165 ~~gvLk~L~~KTGFs~~EV~RKYirY~LnE------r~F~pd~VaDLi~Lrkas~L~D~evaEi 222 (278)
+.+.|+.+..|.|-|..+|. |+|+|.- +.-+++-+.+-++.-. ..||++|+++|
T Consensus 212 ~~~~l~~ia~~~g~s~aqva---L~w~l~~~v~vI~g~~~~~~l~enl~a~~-~~Ls~e~~~~l 271 (298)
T 1vp5_A 212 QNGVLRSIAEKYGKTVAQVI---LRWLTQKGIVAIPKTVRRERMKENISIFD-FELTQEDMEKI 271 (298)
T ss_dssp GCHHHHHHHHHHTCCHHHHH---HHHHHHTTCEECCCCSCHHHHHHHHCCSS-CCCCHHHHHHH
T ss_pred CcHHHHHHHHHhCCCHHHHH---HHHHHhCCCEEEeCCCCHHHHHHHHhhcC-CCCCHHHHHHH
Confidence 35789999999999999997 5555654 3456777777765432 47999998866
No 133
>1mzr_A 2,5-diketo-D-gluconate reductase A; alpha/beta-barrel, aldo-ketoreductase, NADPH dependant, BACT targets at IGS-CNRS, france, BIGS; 2.13A {Escherichia coli} SCOP: c.1.7.1
Probab=24.56 E-value=69 Score=27.76 Aligned_cols=56 Identities=21% Similarity=0.423 Sum_probs=40.8
Q ss_pred CCCchHHHHHHHHhCCChHHHHHHHHHHHhcC------CCCChHHHHHHHHHHhhcCCCcHHHHHH
Q 023705 163 AVNPPALKGLVQKTGFSMEDVLRKYIRYALNE------KPFNPDLVVNLIQLRKASMLDDSQVAEI 222 (278)
Q Consensus 163 al~~gvLk~L~~KTGFs~~EV~RKYirY~LnE------r~F~pd~VaDLi~Lrkas~L~D~evaEi 222 (278)
-++.+.|+.+..|.|-|..+|. |+|.|.- +.-+++-+.+-++.-. ..||++|+++|
T Consensus 217 ~l~~~~l~~ia~~~g~s~aqva---L~w~l~~~v~vI~g~~~~~~l~enl~a~~-~~Ls~e~~~~l 278 (296)
T 1mzr_A 217 VFDQKVIRDLADKYGKTPAQIV---IRWHLDSGLVVIPKSVTPSRIAENFDVWD-FRLDKDELGEI 278 (296)
T ss_dssp TTTSHHHHHHHHHHTCCHHHHH---HHHHHHTTCEECCBCCCHHHHHHTTCCSS-CCCCHHHHHHH
T ss_pred hcChHHHHHHHHHhCCCHHHHH---HHHHHhCCCEEEeCCCCHHHHHHHHhhcC-CCCCHHHHHHH
Confidence 3566899999999999999997 6666665 2345666666665322 46999998876
No 134
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=24.48 E-value=1.4e+02 Score=18.94 Aligned_cols=41 Identities=15% Similarity=0.220 Sum_probs=20.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhcC-CCCChHHHHHHHHHHhhcCCCcHH
Q 023705 170 KGLVQKTGFSMEDVLRKYIRYALNE-KPFNPDLVVNLIQLRKASMLDDSQ 218 (278)
Q Consensus 170 k~L~~KTGFs~~EV~RKYirY~LnE-r~F~pd~VaDLi~Lrkas~L~D~e 218 (278)
++|..++|.|. .||.-..+- +..+.+ .+..|-+++|++-++
T Consensus 30 ~~lA~~~gis~-----~~i~~~e~g~~~~~~~---~l~~l~~~l~~~~~~ 71 (74)
T 1y7y_A 30 ETLAFLSGLDR-----SYVGGVERGQRNVSLV---NILKLATALDIEPRE 71 (74)
T ss_dssp HHHHHHHTCCH-----HHHHHHHTTCSCCBHH---HHHHHHHHTTSCGGG
T ss_pred HHHHHHHCcCH-----HHHHHHHCCCCCCCHH---HHHHHHHHhCcCHHH
Confidence 34445555442 234333443 444443 455666777776654
No 135
>1mi3_A Xylose reductase, XR; aldo-keto reductase, beta-alpha barrel, dimer, oxidoreductase; HET: NAD; 1.80A {Candida tenuis} SCOP: c.1.7.1 PDB: 1jez_A* 1k8c_A* 1ye6_A* 1ye4_A* 1sm9_A* 1r38_A* 1z9a_A*
Probab=24.34 E-value=87 Score=26.84 Aligned_cols=55 Identities=22% Similarity=0.277 Sum_probs=40.1
Q ss_pred CCchHHHHHHHHhCCChHHHHHHHHHHHhcC------CCCChHHHHHHHHHHhhcCCCcHHHHHH
Q 023705 164 VNPPALKGLVQKTGFSMEDVLRKYIRYALNE------KPFNPDLVVNLIQLRKASMLDDSQVAEI 222 (278)
Q Consensus 164 l~~gvLk~L~~KTGFs~~EV~RKYirY~LnE------r~F~pd~VaDLi~Lrkas~L~D~evaEi 222 (278)
+....|++|..|.|-|..+|. |+|+|.- +.-+++-+.+-++.-. ..||++|+++|
T Consensus 240 ~~~~~l~~iA~~~g~t~aqva---L~w~l~~~~~vI~g~~~~~~l~en~~~~~-~~L~~e~~~~l 300 (322)
T 1mi3_A 240 FAHDTIKAIAAKYNKTPAEVL---LRWAAQRGIAVIPKSNLPERLVQNRSFNT-FDLTKEDFEEI 300 (322)
T ss_dssp TSCHHHHHHHHHHTCCHHHHH---HHHHHTTTCEECCCCCSHHHHHHTTSCCS-SCCCHHHHHHH
T ss_pred ccCHHHHHHHHHcCCCHHHHH---HHHHHhCCCEEEcCCCCHHHHHHHHhhcC-CCcCHHHHHHH
Confidence 456899999999999999997 5666765 2345666666654322 46999998765
No 136
>3b3e_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.80A {Bacillus subtilis} PDB: 3b3d_A
Probab=24.15 E-value=83 Score=27.41 Aligned_cols=55 Identities=16% Similarity=0.324 Sum_probs=39.5
Q ss_pred CCchHHHHHHHHhCCChHHHHHHHHHHHhcC------CCCChHHHHHHHHHHhhcCCCcHHHHHH
Q 023705 164 VNPPALKGLVQKTGFSMEDVLRKYIRYALNE------KPFNPDLVVNLIQLRKASMLDDSQVAEI 222 (278)
Q Consensus 164 l~~gvLk~L~~KTGFs~~EV~RKYirY~LnE------r~F~pd~VaDLi~Lrkas~L~D~evaEi 222 (278)
++.+.|+++..|.|-|..+|. |+|.|.- +.-+++-+.+-++.-. ..||++|+++|
T Consensus 232 ~~~~~l~~iA~~~g~t~aqva---L~w~l~~~~v~I~gs~~~~~l~en~~a~~-~~Ls~ee~~~l 292 (310)
T 3b3e_A 232 LDNEVLTQIAEKHNKSVAQVI---LRWDLQHGVVTIPKSIKEHRIIENADIFD-FELSQEDMDKI 292 (310)
T ss_dssp TTCHHHHHHHHHHTCCHHHHH---HHHHHHTTCEECCBCCSHHHHHHHTCCSS-CCCCHHHHHHH
T ss_pred CCCHHHHHHHHHhCCCHHHHH---HHHHHcCCCeEEeCCCCHHHHHHHHHhcc-CCCCHHHHHHH
Confidence 456899999999999999998 5556653 2236676766654322 36999998765
No 137
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Probab=24.13 E-value=1.2e+02 Score=23.97 Aligned_cols=61 Identities=16% Similarity=0.330 Sum_probs=39.4
Q ss_pred hhhhhhhhhhhcCChhhhhhhhhcchhhHHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHHHHHHHHHH
Q 023705 121 FVIAFVKTVKKFNSPKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYA 191 (278)
Q Consensus 121 FviA~vRtvrK~~SPraKRkR~VNKNamLvkSLDeyFp~gRdal~~gvLk~L~~KTGFs~~EV~RKYirY~ 191 (278)
.++.++++.+.+.. |+. -.-+++++=+......+++..++.|+++|+|+..||-+=|-.|.
T Consensus 14 ~~~~~~~~~~~~~~--------~~~--~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~s~~ei~~l~~~F~ 74 (229)
T 3dd4_A 14 VIVLFVKLLEQFGL--------IEA--GLEDSVEDELEMATVRHRPEALELLEAQSKFTKKELQILYRGFK 74 (229)
T ss_dssp HHHHHHHHHHHHTC--------CC------CCHHHHHTTSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--------hcc--cccCCcHHHhhhhhccCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 34556666555543 222 12455666566666667789999999999999999877666664
No 138
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=23.99 E-value=68 Score=21.82 Aligned_cols=39 Identities=5% Similarity=0.118 Sum_probs=22.3
Q ss_pred cchhhHHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHH
Q 023705 144 NKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDV 183 (278)
Q Consensus 144 NKNamLvkSLDeyFp~gRdal~~gvLk~L~~KTGFs~~EV 183 (278)
.-...-++.|.++|..+.- .+......|..++|-+...|
T Consensus 13 ~ft~~q~~~Le~~F~~~~y-p~~~~r~~LA~~l~l~~~qV 51 (70)
T 2da2_A 13 RFTDYQLRVLQDFFDANAY-PKDDEFEQLSNLLNLPTRVI 51 (70)
T ss_dssp CCCHHHHHHHHHHHHHCSS-CCHHHHHHHHHHSCCCHHHH
T ss_pred CCCHHHHHHHHHHHHcCCC-cCHHHHHHHHHHhCCCHHHh
Confidence 3344455566666665542 55556666666666665554
No 139
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=23.89 E-value=87 Score=23.23 Aligned_cols=40 Identities=18% Similarity=0.230 Sum_probs=25.4
Q ss_pred CCCCChHHHHHHHHHHhhcCCCcHHHHHHHH-------HHHHhhhhhcC
Q 023705 194 EKPFNPDLVVNLIQLRKASMLDDSQVAEILN-------EISRRFVREKD 235 (278)
Q Consensus 194 Er~F~pd~VaDLi~Lrkas~L~D~evaEiLn-------E~srRiv~~~G 235 (278)
...+++... +++.| -+-|++..|||+.|+ -.-.|++++.|
T Consensus 32 ~~~Lt~re~-~Vl~l-~~~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 32 DKRLSPKES-EVLRL-FAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSSCCHHHH-HHHHH-HHHTCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHH-HHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 355666655 44555 368999999999884 33345555555
No 140
>1vbj_A Prostaglandin F synthase; TIM barrel, oxidoreductase; HET: NAP CIT; 2.10A {Trypanosoma brucei}
Probab=23.78 E-value=99 Score=26.34 Aligned_cols=55 Identities=20% Similarity=0.221 Sum_probs=41.3
Q ss_pred CCchHHHHHHHHhCCChHHHHHHHHHHHhcC------CCCChHHHHHHHHHHhhcCCCcHHHHHH
Q 023705 164 VNPPALKGLVQKTGFSMEDVLRKYIRYALNE------KPFNPDLVVNLIQLRKASMLDDSQVAEI 222 (278)
Q Consensus 164 l~~gvLk~L~~KTGFs~~EV~RKYirY~LnE------r~F~pd~VaDLi~Lrkas~L~D~evaEi 222 (278)
++.+.|+.+..|.|-|..+|. |+|+|.- +.-+++-+.+-++.- ...||++|+++|
T Consensus 201 ~~~~~l~~ia~~~g~s~aqva---L~w~l~~~~~~I~g~~~~~~l~en~~a~-~~~L~~e~~~~l 261 (281)
T 1vbj_A 201 VEDARLKAIGGKYGKTAAQVM---LRWEIQAGVITIPKSGNEARIKENGNIF-DFELTAEDIQVI 261 (281)
T ss_dssp TTCHHHHHHHHTTTCCHHHHH---HHHHHHTTCEECCBCSCHHHHHHHHCCS-SCCCCHHHHHHH
T ss_pred CCCHHHHHHHHHhCCCHHHHH---HHHHHHCCCEEecCCCCHHHHHHHHhhc-CCCCCHHHHHHH
Confidence 456799999999999999997 5666654 234677777776542 247999999876
No 141
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=23.72 E-value=1.2e+02 Score=19.83 Aligned_cols=38 Identities=16% Similarity=0.287 Sum_probs=23.1
Q ss_pred chhhHHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHH
Q 023705 145 KNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDV 183 (278)
Q Consensus 145 KNamLvkSLDeyFp~gRdal~~gvLk~L~~KTGFs~~EV 183 (278)
-...-++.|.++|..+. -.+......|..++|-+...|
T Consensus 12 ft~~q~~~Le~~f~~~~-yp~~~~r~~La~~~~l~~~qV 49 (61)
T 1akh_A 12 ISPQARAFLEEVFRRKQ-SLNSKEKEEVAKKCGITPLQV 49 (61)
T ss_dssp CCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHTSCHHHH
T ss_pred CCHHHHHHHHHHHHhCC-CcCHHHHHHHHHHHCcCHHHH
Confidence 34455566666666653 356666667777777666554
No 142
>3iz5_t 60S acidic ribosomal protein P11 - P1 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_t
Probab=23.70 E-value=17 Score=28.91 Aligned_cols=12 Identities=17% Similarity=0.515 Sum_probs=0.0
Q ss_pred hhhHHHHhcchh
Q 023705 66 EVEVEVEEELPW 77 (278)
Q Consensus 66 e~e~e~e~e~~w 77 (278)
|++||.+++|.+
T Consensus 95 ee~EEsddDmGf 106 (110)
T 3iz5_t 95 EAKEESDDDMGF 106 (110)
T ss_dssp ------------
T ss_pred cccccccccccc
Confidence 344445556653
No 143
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=23.49 E-value=55 Score=22.97 Aligned_cols=37 Identities=24% Similarity=0.126 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHhhcCCCcHHHHHHHH
Q 023705 185 RKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILN 224 (278)
Q Consensus 185 RKYirY~LnEr~F~pd~VaDLi~Lrkas~L~D~evaEiLn 224 (278)
+.-|+-+|.. . ++.-..++.||-.-|++..|||++|+
T Consensus 28 ~~~l~~~l~~--L-~~~~r~vl~l~~~~g~s~~eIA~~lg 64 (92)
T 3hug_A 28 RLLIADALAQ--L-SAEHRAVIQRSYYRGWSTAQIATDLG 64 (92)
T ss_dssp HHHHHHHHHT--S-CHHHHHHHHHHHTSCCCHHHHHHHHT
T ss_pred HHHHHHHHHc--C-CHHHHHHHHHHHHcCCCHHHHHHHHC
Confidence 3344445543 2 34556788999999999999999986
No 144
>3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable chaperon unknown function; 3.10A {Leptospira interrogans serovar copenhaorganism_taxid}
Probab=23.47 E-value=96 Score=26.77 Aligned_cols=81 Identities=11% Similarity=0.215 Sum_probs=45.7
Q ss_pred hhhhhhhcchhhHHhhHHHHHhcCCCCCCchHHHHHHHH-hCCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCC-
Q 023705 137 FKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQK-TGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASML- 214 (278)
Q Consensus 137 aKRkR~VNKNamLvkSLDeyFp~gRdal~~gvLk~L~~K-TGFs~~EV~RKYirY~LnEr~F~pd~VaDLi~Lrkas~L- 214 (278)
++|....--...|-+.|++.+.... .++...++..-.+ .|.|.++ ||.+||.-|.-..+ ++.....
T Consensus 71 A~~~gi~vsd~ev~~~i~~~~~~~~-~~~~~~~~~~L~~~~g~t~~~-~~~~lr~~l~~~~l----------v~~~v~v~ 138 (325)
T 3nrk_A 71 AEEESIQVNEQRVDSEIEKRMEVMG-ITNRKQFEKTMETSSGMPFEL-WVTELPYQIKKGQL----------LQLKIAVP 138 (325)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHCSCHHH-HGGGHHHHHHHHHH----------HHHTCCCC
T ss_pred HHHcCCCcCHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHH----------HHccCCCC
Confidence 3444433344555566666333322 4666777776666 8998654 66666655432222 3444566
Q ss_pred --CcHHHHHHHHHHHHh
Q 023705 215 --DDSQVAEILNEISRR 229 (278)
Q Consensus 215 --~D~evaEiLnE~srR 229 (278)
||+||....++.-.+
T Consensus 139 ~Ptd~ei~~yy~~~~~~ 155 (325)
T 3nrk_A 139 PPNEQEIRSWYNQNKDK 155 (325)
T ss_dssp CCCHHHHHHHHHHCHHH
T ss_pred CCCHHHHHHHHHHhhhh
Confidence 777777776665443
No 145
>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A*
Probab=23.47 E-value=13 Score=32.68 Aligned_cols=70 Identities=17% Similarity=0.122 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCcHHH-HHHHHHHHHhhhhhcCccccccchhhhhhcccCCc
Q 023705 181 EDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQV-AEILNEISRRFVREKDEDALDEQPPMQALFVFDPV 254 (278)
Q Consensus 181 ~EV~RKYirY~LnEr~F~pd~VaDLi~Lrkas~L~D~ev-aEiLnE~srRiv~~~G~vmmn~~~avqalf~~~~~ 254 (278)
+-++..|+.... .+.+..++.++-+.|..|.+.++ +..|+|+...+++..=.+.--+..=.++.|++||-
T Consensus 20 EP~L~~~l~~~I----L~~~~l~~aLa~~la~kl~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~D~~~~~~~DPa 90 (267)
T 1ssq_A 20 EPMLASFFHSTI----LKHQNLGGALSYLLANKLANPIMPAISLREIIEEAYQSNPSIIDCAACDIQAVRHRDPA 90 (267)
T ss_dssp CHHHHHHHHHHT----TTSSSHHHHHHHHHHHHHCBTTBCHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHCTT
T ss_pred CCHHHHHhcccc----cCCCCHHHHHHHHHhccCCCccCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHcCChh
Confidence 445555555443 56677788888888888888766 56778888888876654444444557888888874
No 146
>3lut_A Voltage-gated potassium channel subunit beta-2; voltage gating, potassium channel, KV1.2, gating charges, no analysis, ION transport; HET: NAP; 2.90A {Rattus norvegicus}
Probab=23.45 E-value=1.5e+02 Score=25.87 Aligned_cols=53 Identities=21% Similarity=0.348 Sum_probs=39.5
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHHhcCC--------CCChHHHHHHHHHHh-hcCCCcHHHHHH
Q 023705 167 PALKGLVQKTGFSMEDVLRKYIRYALNEK--------PFNPDLVVNLIQLRK-ASMLDDSQVAEI 222 (278)
Q Consensus 167 gvLk~L~~KTGFs~~EV~RKYirY~LnEr--------~F~pd~VaDLi~Lrk-as~L~D~evaEi 222 (278)
..|+.|..|.|-|..+|. |+|.|.-. .-+++-+.+-++.-. ..-||++|+++|
T Consensus 290 ~~l~~iA~~~g~t~aqva---L~w~l~~~~v~~vI~g~~~~~~l~en~~a~~~~~~Ls~e~~~~i 351 (367)
T 3lut_A 290 KELQAIAERLGCTLPQLA---IAWCLRNEGVSSVLLGASNAEQLMENIGAIQVLPKLSSSIVHEI 351 (367)
T ss_dssp HHHHHHHHHTTSCHHHHH---HHHHHTSTTEEEEEECCSSHHHHHHHHTHHHHGGGCCHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHH---HHHHHhCCCCcEEecCCCCHHHHHHHHHhhcccCCCCHHHHHHH
Confidence 578999999999999997 66677543 346777777765433 246999999875
No 147
>2wzm_A Aldo-keto reductase; oxidoreductase; HET: NA7; 1.64A {Mycobacterium smegmatis} PDB: 2wzt_A
Probab=23.40 E-value=98 Score=26.38 Aligned_cols=55 Identities=16% Similarity=0.398 Sum_probs=40.8
Q ss_pred CCchHHHHHHHHhCCChHHHHHHHHHHHhcC------CCCChHHHHHHHHHHhhcCCCcHHHHHH
Q 023705 164 VNPPALKGLVQKTGFSMEDVLRKYIRYALNE------KPFNPDLVVNLIQLRKASMLDDSQVAEI 222 (278)
Q Consensus 164 l~~gvLk~L~~KTGFs~~EV~RKYirY~LnE------r~F~pd~VaDLi~Lrkas~L~D~evaEi 222 (278)
++.+.|+++.+|.|-|..+|. |+|.|.- +.-+++-+.+-++.-. ..|+++|+++|
T Consensus 204 ~~~~~l~~ia~~~g~s~aqva---L~w~l~~~~~~I~g~~~~~~l~en~~~~~-~~L~~~~~~~l 264 (283)
T 2wzm_A 204 LDHPAVTAIAEAHGRTAAQVL---LRWSIQLGNVVISRSANPERIASNLDVFG-FELTADEMETL 264 (283)
T ss_dssp GGCHHHHHHHHHHTCCHHHHH---HHHHHHTTCEEEECCSSHHHHHHHHCCSS-CCCCHHHHHHH
T ss_pred cchHHHHHHHHHhCCCHHHHH---HHHHHHCCCEEEeCCCCHHHHHHHHHhcC-CCCCHHHHHHH
Confidence 345789999999999999997 5566654 3456777777775432 47999998866
No 148
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=23.33 E-value=1.7e+02 Score=19.35 Aligned_cols=44 Identities=11% Similarity=0.171 Sum_probs=24.5
Q ss_pred HHHHHhCCChHHHHHHHHHHHhc-CCCCChHHHHHHHHHHhhcCCCcHHHHHH
Q 023705 171 GLVQKTGFSMEDVLRKYIRYALN-EKPFNPDLVVNLIQLRKASMLDDSQVAEI 222 (278)
Q Consensus 171 ~L~~KTGFs~~EV~RKYirY~Ln-Er~F~pd~VaDLi~Lrkas~L~D~evaEi 222 (278)
+|..++|.+.. +|.-..+ ++..+.+ .+..|-+++|.+.+++-+-
T Consensus 32 elA~~~gis~~-----~is~~e~g~~~~~~~---~l~~l~~~l~~~~~~l~~~ 76 (83)
T 3f6w_A 32 ELAARLGRPQS-----FVSKTENAERRLDVI---EFMDFCRGIGTDPYALLSK 76 (83)
T ss_dssp HHHHHHTSCHH-----HHHHHHTTSSCCCHH---HHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHCcCHH-----HHHHHHCCCCCCCHH---HHHHHHHHcCCCHHHHHHH
Confidence 44444454432 3433344 4455554 5666778899987766443
No 149
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=23.14 E-value=1.4e+02 Score=23.88 Aligned_cols=35 Identities=14% Similarity=0.223 Sum_probs=20.8
Q ss_pred CCCcHHHHHHHHHHHHhhhhhcCccccccchhhhhhc
Q 023705 213 MLDDSQVAEILNEISRRFVREKDEDALDEQPPMQALF 249 (278)
Q Consensus 213 ~L~D~evaEiLnE~srRiv~~~G~vmmn~~~avqalf 249 (278)
.++++++.+++..+++--++=++. .|...++..++
T Consensus 284 ~~~~~~l~~~~~~l~~~~~~lk~~--~~~~~~le~l~ 318 (327)
T 1iqp_A 284 PIEEPKKVLLADKIGEYNFRLVEG--ANEIIQLEALL 318 (327)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHTT--CCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHH
Confidence 578888888887766655544443 35444444443
No 150
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=23.02 E-value=1e+02 Score=27.43 Aligned_cols=82 Identities=16% Similarity=0.165 Sum_probs=0.0
Q ss_pred hhHHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHHHHHHHHHHhcCC-CCChHHHHHHH-HHHhhcCCCcHHHHHHHH
Q 023705 147 AMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEK-PFNPDLVVNLI-QLRKASMLDDSQVAEILN 224 (278)
Q Consensus 147 amLvkSLDeyFp~gRdal~~gvLk~L~~KTGFs~~EV~RKYirY~LnEr-~F~pd~VaDLi-~Lrkas~L~D~evaEiLn 224 (278)
..+-.-|+|||..+--..-.-.+++|..- +-.-|++++-|-.+|..+ .=+.+.+.+|+ +|-+.--+|.+|+.+-+.
T Consensus 167 kki~~lL~EY~~~~D~~EA~~ci~EL~~p--~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~ 244 (307)
T 2zu6_B 167 KEIDMLLKEYLLSGDISEAEHCLKELEVP--HFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYE 244 (307)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCCG--GGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHcCCC--cchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_pred HHHHhh
Q 023705 225 EISRRF 230 (278)
Q Consensus 225 E~srRi 230 (278)
++-..+
T Consensus 245 ~vl~~l 250 (307)
T 2zu6_B 245 RIYNEI 250 (307)
T ss_dssp HHHHHH
T ss_pred HHHHhc
No 151
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=22.93 E-value=1.4e+02 Score=18.40 Aligned_cols=30 Identities=3% Similarity=-0.203 Sum_probs=15.7
Q ss_pred HHHHHhc-CCCCChHHHHHHHHHHhhcCCCcHHH
Q 023705 187 YIRYALN-EKPFNPDLVVNLIQLRKASMLDDSQV 219 (278)
Q Consensus 187 YirY~Ln-Er~F~pd~VaDLi~Lrkas~L~D~ev 219 (278)
+|.-..+ ++..+.+ .+..+-.++|.+-+++
T Consensus 30 ~i~~~e~g~~~~~~~---~l~~i~~~l~~~~~~l 60 (66)
T 2xi8_A 30 TINGIEKNKYNPSLQ---LALKIAYYLNTPLEDI 60 (66)
T ss_dssp HHHHHHTTSCCCCHH---HHHHHHHHTTSCHHHH
T ss_pred HHHHHHcCCCCCCHH---HHHHHHHHHCcCHHHH
Confidence 3433344 3444444 4556666777765543
No 152
>4afx_A Protein Z dependent protease inhibitor; hydrolase inhibitor, serpin, protein Z dependent inhibitor, coagulation; 2.09A {Homo sapiens} PDB: 4aju_A 3h5c_A* 3f1s_A*
Probab=22.87 E-value=16 Score=33.14 Aligned_cols=45 Identities=27% Similarity=0.338 Sum_probs=28.5
Q ss_pred hcchhhHHhhhhhh----hhcccccccc----CCCcCCCCCchhHHhhhhHhhh
Q 023705 73 EELPWIQEKALDLV----EFTGSVTQAI----PGPRVGQSKLPWILAVPLAYVG 118 (278)
Q Consensus 73 ~e~~wiqekaldlv----eftG~vtQAI----PGPRVg~s~lPwLlAlPLAylG 118 (278)
||=||....-.+|+ +|+-+.-+.+ || =+==||+.--.||.+.|+|
T Consensus 42 ~~~~~~~~~~~~l~~~~~~Fa~~L~~~l~~~~~~-Niv~SP~SI~~aLaml~~G 94 (387)
T 4afx_A 42 EEKAWLMASRQQLAKETSNFGFSLLRKISMRHDG-NMVFSPFGMSLAMTGLMLG 94 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS-CEEECHHHHHHHHHHHHTT
T ss_pred ccCccccchHHHHHHHHHHHHHHHHHHHhhcCCC-CEEEChHHHHHHHHHHHhh
Confidence 44589887555544 3444443443 55 4555778778888888887
No 153
>3h7u_A Aldo-keto reductase; stress response, NADP, drought tolerance, oxidoreductase; HET: NAP; 1.25A {Arabidopsis thaliana}
Probab=22.84 E-value=90 Score=27.21 Aligned_cols=56 Identities=21% Similarity=0.258 Sum_probs=40.3
Q ss_pred CCCchHHHHHHHHhCCChHHHHHHHHHHHhcC------CCCChHHHHHHHHHHhhcCCCcHHHHHH
Q 023705 163 AVNPPALKGLVQKTGFSMEDVLRKYIRYALNE------KPFNPDLVVNLIQLRKASMLDDSQVAEI 222 (278)
Q Consensus 163 al~~gvLk~L~~KTGFs~~EV~RKYirY~LnE------r~F~pd~VaDLi~Lrkas~L~D~evaEi 222 (278)
.+....|+.|..|.|-|..+|. |+|.|.- +.-|++-+.+-++.-. .-|+++|+++|
T Consensus 241 ~~~~~~l~~iA~~~g~t~aqva---L~w~l~~~~~vI~g~~~~~~l~enl~a~~-~~L~~e~~~~i 302 (335)
T 3h7u_A 241 VLKNPILNMVAEKLGKSPAQVA---LRWGLQMGHSVLPKSTNEGRIKENFNVFD-WSIPDYMFAKF 302 (335)
T ss_dssp GGGCHHHHHHHHHHTCCHHHHH---HHHHHHTTCEECCBCSCHHHHHHHHCCSS-CCCCHHHHHHG
T ss_pred ccccHHHHHHHHHHCcCHHHHH---HHHHHHCCCEEEeCCCCHHHHHHHHhhCC-CCcCHHHHHHH
Confidence 3456899999999999999997 4555654 2346777777665332 36899888765
No 154
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=22.81 E-value=74 Score=22.23 Aligned_cols=48 Identities=19% Similarity=0.224 Sum_probs=28.2
Q ss_pred hhhhhhhhhcchhhHHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHH
Q 023705 135 PKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDV 183 (278)
Q Consensus 135 PraKRkR~VNKNamLvkSLDeyFp~gRdal~~gvLk~L~~KTGFs~~EV 183 (278)
|+.+|++...-...-++.|.++|..+.- .+......|..++|-+...|
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~y-p~~~~r~~La~~l~l~~~qV 53 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRY-LSAPEREHLASLIRLTPTQV 53 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSC-CCHHHHHHHHHHTTCCHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCC-CCHHHHHHHHHHhCCCHHHH
Confidence 3334444444555566667777766553 56666666777777666555
No 155
>1qwk_A Aldose reductase, aldo-keto reductase family 1 member C1, XH961; structural genomics, PSI, protein structure initiative; 1.60A {Caenorhabditis elegans} SCOP: c.1.7.1
Probab=22.78 E-value=1.1e+02 Score=26.15 Aligned_cols=53 Identities=23% Similarity=0.357 Sum_probs=39.6
Q ss_pred chHHHHHHHHhCCChHHHHHHHHHHHhcC------CCCChHHHHHHHHHHhhcCCCcHHHHHH
Q 023705 166 PPALKGLVQKTGFSMEDVLRKYIRYALNE------KPFNPDLVVNLIQLRKASMLDDSQVAEI 222 (278)
Q Consensus 166 ~gvLk~L~~KTGFs~~EV~RKYirY~LnE------r~F~pd~VaDLi~Lrkas~L~D~evaEi 222 (278)
...|+++..|.|-|..+|. |+|.|.- +.-+++-+.+-++.-. ..||++|+++|
T Consensus 231 ~~~l~~ia~~~g~s~aqva---L~w~l~~~~~vI~g~~~~~~l~en~~a~~-~~L~~e~~~~l 289 (317)
T 1qwk_A 231 DQNVLALAEKTHKTPAQVL---LRYALDRGCAILPKSIQENRIKENFEVFD-FSLTEEDIAKL 289 (317)
T ss_dssp CHHHHHHHHHHTCCHHHHH---HHHHHHTTCEEECCCCSHHHHHHHHCCSS-CCCCHHHHHHH
T ss_pred cHHHHHHHHHHCcCHHHHH---HHHHHhCCCeEEeCCCCHHHHHHHHhhcC-CCCCHHHHHHH
Confidence 4789999999999999997 5566654 3356777777765322 46999998876
No 156
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=22.77 E-value=1.5e+02 Score=18.64 Aligned_cols=30 Identities=17% Similarity=0.111 Sum_probs=16.0
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHhhcCCCcHHH
Q 023705 187 YIRYALNEKPFNPDLVVNLIQLRKASMLDDSQV 219 (278)
Q Consensus 187 YirY~LnEr~F~pd~VaDLi~Lrkas~L~D~ev 219 (278)
+|.-..+-+.-.++. +..|-.++|.+.+++
T Consensus 32 ~i~~~e~g~~~~~~~---l~~i~~~l~~~~~~l 61 (71)
T 1zug_A 32 SIQLIEAGVTKRPRF---LFEIAMALNCDPVWL 61 (71)
T ss_dssp HHHHHHTTCCSSCST---HHHHHHHTTSCHHHH
T ss_pred HHHHHHcCCCCChHH---HHHHHHHHCCCHHHH
Confidence 344444444333433 666777777775543
No 157
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=22.30 E-value=82 Score=19.80 Aligned_cols=30 Identities=30% Similarity=0.245 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhh
Q 023705 199 PDLVVNLIQLRKASMLDDSQVAEILNEISRRF 230 (278)
Q Consensus 199 pd~VaDLi~Lrkas~L~D~evaEiLnE~srRi 230 (278)
++....++.| ..-|++..|||+.|+ +|+.-
T Consensus 18 ~~~~~~i~~l-~~~g~s~~eIA~~lg-is~~T 47 (55)
T 2x48_A 18 DDLVSVAHEL-AKMGYTVQQIANALG-VSERK 47 (55)
T ss_dssp HHHHHHHHHH-HHTTCCHHHHHHHHT-SCHHH
T ss_pred HHHHHHHHHH-HHcCCCHHHHHHHHC-cCHHH
Confidence 5566666666 467899999999886 34433
No 158
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=22.21 E-value=17 Score=27.41 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=15.3
Q ss_pred hhhhhhhccccccccCCCc
Q 023705 82 ALDLVEFTGSVTQAIPGPR 100 (278)
Q Consensus 82 aldlveftG~vtQAIPGPR 100 (278)
-.|++|++|.|++++|+=+
T Consensus 10 ~~~~ie~~G~Vik~l~n~~ 28 (79)
T 3i4o_A 10 KDGAIEVEGRVVEPLPNAM 28 (79)
T ss_dssp --CCSEEEEEEEEEETTTE
T ss_pred ccceEEEEEEEEEEcCCCE
Confidence 3589999999999999863
No 159
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=22.19 E-value=66 Score=23.13 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=13.9
Q ss_pred HhCCChHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 023705 175 KTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQ 207 (278)
Q Consensus 175 KTGFs~~EV~RKYirY~LnEr~F~pd~VaDLi~ 207 (278)
+.|+|..+|-+.+ ..+..+|-..+.
T Consensus 20 ~~G~s~~~ia~~l--------gis~~Tv~r~~~ 44 (141)
T 1u78_A 20 LLNVSLHEMSRKI--------SRSRHCIRVYLK 44 (141)
T ss_dssp HTTCCHHHHHHHH--------TCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHH--------CcCHHHHHHHHH
Confidence 3566666665554 345556655554
No 160
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=21.98 E-value=35 Score=23.97 Aligned_cols=50 Identities=16% Similarity=0.165 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhhcC
Q 023705 181 EDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKD 235 (278)
Q Consensus 181 ~EV~RKYirY~LnEr~F~pd~VaDLi~Lrkas~L~D~evaEiLnE~srRiv~~~G 235 (278)
.+||+.|++=.--...+|.+.+| +..-|+|=+|+..+.+|-+-.-+++..
T Consensus 4 ~~Il~~~l~~~~~~~~vdl~~lA-----~~t~G~SGADi~~l~~eAa~~ai~~~~ 53 (82)
T 2dzn_B 4 RLIFGTIASKMSLAPEADLDSLI-----IRNDSLSGAVIAAIMQEAGLRAVRKNR 53 (82)
T ss_dssp ----------CEECTTCCSTTTT-----TSSCCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCCCCcCCHHHHH-----HHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 46777666521112234444333 345589999999999988888777754
No 161
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.97 E-value=90 Score=21.26 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=20.9
Q ss_pred chhhHHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHH
Q 023705 145 KNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDV 183 (278)
Q Consensus 145 KNamLvkSLDeyFp~gRdal~~gvLk~L~~KTGFs~~EV 183 (278)
-...-++.|.++|..+.- .+......|..++|-+...|
T Consensus 14 ft~~q~~~Le~~F~~~~y-p~~~~r~~LA~~l~l~~~qV 51 (70)
T 2dmu_A 14 FTDEQLEALENLFQETKY-PDVGTREQLARKVHLREEKV 51 (70)
T ss_dssp CCHHHHHHHHHHHHHCSS-CCHHHHHHHHHHHTCCHHHH
T ss_pred CCHHHHHHHHHHHHccCC-CCHHHHHHHHHHHCCCHHHe
Confidence 344445556666655443 45555566666666655544
No 162
>3mop_A Myeloid differentiation primary response protein; death domain complex, helical symmetry, single-stranded HELI assembly; 3.40A {Homo sapiens}
Probab=21.91 E-value=2.7e+02 Score=21.57 Aligned_cols=72 Identities=15% Similarity=0.249 Sum_probs=41.4
Q ss_pred hhhHHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHhh-cCCCcHHHHHHHH
Q 023705 146 NAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKA-SMLDDSQVAEILN 224 (278)
Q Consensus 146 NamLvkSLDeyFp~gRdal~~gvLk~L~~KTGFs~~EV~RKYirY~LnEr~F~pd~VaDLi~Lrka-s~L~D~evaEiLn 224 (278)
|.-+-+-|-.+|--.+ + ....=|.|..+-||+..+| +|. |+.-+| +..|+.+=.+ .+-|=++..++|.
T Consensus 8 ~~~~R~kL~~~LDp~~-~-~g~dWr~LA~~Lg~~~~~I-----~~f--e~~~sP--T~~lL~~W~~r~~aTVg~L~~~L~ 76 (110)
T 3mop_A 8 NMRVRRRLSLFLNVRT-Q-VAADWTALAEEMDFEYLEI-----RQL--ETQADP--TGRLLDAWQGRPGASVGRLLELLT 76 (110)
T ss_dssp CHHHHHHHHHHHTSCC-S-SSCCHHHHHTTTTCCHHHH-----HHH--TSSSSH--HHHHHHHHHSSSSCSHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCC-C-ccccHHHHHHHcCCCHHHH-----HHH--hCCCCc--HHHHHHHHhcCCCCcHHHHHHHHH
Confidence 3333344444443332 1 2345789999999997665 222 444455 4555554211 5566677778887
Q ss_pred HHHH
Q 023705 225 EISR 228 (278)
Q Consensus 225 E~sr 228 (278)
++.|
T Consensus 77 ~i~R 80 (110)
T 3mop_A 77 KLGR 80 (110)
T ss_dssp HHTC
T ss_pred HcCC
Confidence 7766
No 163
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=21.90 E-value=79 Score=21.62 Aligned_cols=38 Identities=5% Similarity=0.080 Sum_probs=22.0
Q ss_pred chhhHHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHH
Q 023705 145 KNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDV 183 (278)
Q Consensus 145 KNamLvkSLDeyFp~gRdal~~gvLk~L~~KTGFs~~EV 183 (278)
-...-++.|.++|..+.- .+......|..++|-+...|
T Consensus 14 ft~~Q~~~Le~~F~~~~y-p~~~~r~~LA~~l~l~~~qV 51 (70)
T 2cra_A 14 YSKGQLRELEREYAANKF-ITKDKRRKISAATSLSERQI 51 (70)
T ss_dssp SCHHHHHHHHHHHHHCSS-CCHHHHHHHHHHTCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHCCCHHHh
Confidence 344455566666665542 55566666666666665554
No 164
>2efv_A Hypothetical protein MJ0366; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Methanocaldococcus jannaschii DSM2661} SCOP: a.43.1.12
Probab=21.82 E-value=56 Score=25.84 Aligned_cols=39 Identities=18% Similarity=0.340 Sum_probs=30.6
Q ss_pred HHHHh----cCCCCChHHHHHHHHHH----hhcCCCcHHHHHHHHHHHHhhhhhcC
Q 023705 188 IRYAL----NEKPFNPDLVVNLIQLR----KASMLDDSQVAEILNEISRRFVREKD 235 (278)
Q Consensus 188 irY~L----nEr~F~pd~VaDLi~Lr----kas~L~D~evaEiLnE~srRiv~~~G 235 (278)
|||.| |=..-|||.++..+... +..-|||+| ++|+++||
T Consensus 26 lRY~LHKLen~~~IdpeiL~ka~e~~K~ykrtitLsdeE---------e~IieKyG 72 (92)
T 2efv_A 26 LRYLLHKLENVENVDIDTLRRAIEAEKKYKRSITLTEEE---------EVIIQRLG 72 (92)
T ss_dssp HHHHHHHGGGCCCCCHHHHHHHHHSCCCEEEEEECCHHH---------HHHHHHHG
T ss_pred HHHHHHHHccCCCCCHHHHHHHHhcccccceeEEecHHH---------HHHHHHHh
Confidence 45544 45789999999999875 467889887 68999999
No 165
>3hi2_B Motility quorum-sensing regulator MQSR; toxin-antitoxin system, Zn-binding protein, MQSA, YGIU B3022, B3021, stress response; 2.00A {Escherichia coli k-12}
Probab=21.68 E-value=61 Score=25.66 Aligned_cols=33 Identities=15% Similarity=0.259 Sum_probs=18.7
Q ss_pred hhHHHHHhcCCCCCCchHHHHHHHHhCCChHHHH
Q 023705 151 KTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVL 184 (278)
Q Consensus 151 kSLDeyFp~gRdal~~gvLk~L~~KTGFs~~EV~ 184 (278)
+.+.+++..++-.++..++++-. +-||+..||.
T Consensus 14 ~~ik~l~~~g~~~~T~sA~~ga~-~LG~~~~~m~ 46 (101)
T 3hi2_B 14 SQVKKLVNAGQVRTTRSALLNAD-ELGLDFDGMC 46 (101)
T ss_dssp HHHHHHHHTTCEEEEHHHHHHHH-HTTCCHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHhhHH-HhCCCHHHHH
Confidence 34555666666666666666554 5555555544
No 166
>3hou_D DNA-directed RNA polymerase II subunit RPB4; RNA polymerase II, metal-binding, transcription bubble; HET: BRU; 3.20A {Saccharomyces cerevisiae} PDB: 1nt9_D 1y1w_D 1y1y_D 1y77_D* 2b63_D* 2b8k_D 2ja5_D* 2ja6_D* 2ja7_D* 2ja8_D* 2r7z_D 2r92_D 2r93_D 1y1v_D* 3fki_D 3h3v_E 2vum_D* 3hov_D* 3how_D* 3hox_D* ...
Probab=21.65 E-value=2.2e+02 Score=25.39 Aligned_cols=56 Identities=25% Similarity=0.289 Sum_probs=39.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHhhcCCCcHHHHHHH
Q 023705 168 ALKGLVQKTGFSMEDVLRKYIRYALNEKPF-NPDLVVNLIQLRKASMLDDSQVAEIL 223 (278)
Q Consensus 168 vLk~L~~KTGFs~~EV~RKYirY~LnEr~F-~pd~VaDLi~Lrkas~L~D~evaEiL 223 (278)
.|..|-.+|+=+..+||+|=+.|+=+=-.| +++.+..+-.|=.-.||.+.|++-|-
T Consensus 125 ~~~~~~~~~~g~~seVf~KTLdYl~rFSKfkn~EAv~aVrELL~~~gLheFEiAqLA 181 (221)
T 3hou_D 125 SIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLG 181 (221)
T ss_dssp HHHHHHHHHSCSCCHHHHHHHHHHHHSCSCCCHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCChHHhheec
Confidence 344455567778899999999999888888 66676666666555666666666543
No 167
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.63 E-value=79 Score=22.03 Aligned_cols=37 Identities=24% Similarity=0.308 Sum_probs=19.0
Q ss_pred hhhHHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHH
Q 023705 146 NAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDV 183 (278)
Q Consensus 146 NamLvkSLDeyFp~gRdal~~gvLk~L~~KTGFs~~EV 183 (278)
...-++.|.++|..+. -.+......|..++|-+...|
T Consensus 15 t~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~l~~~qV 51 (80)
T 2dmq_A 15 KHHQLRTMKSYFAINH-NPDAKDLKQLAQKTGLTKRVL 51 (80)
T ss_dssp CHHHHHHHHHHHHHCS-SCCHHHHHHHHHHTCCCHHHH
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHhCCCHHHh
Confidence 3344455555555543 245555555555555555444
No 168
>1lqa_A TAS protein; TIM barrel, structure 2 function project, S2F, structural GE oxidoreductase; HET: NDP; 1.60A {Escherichia coli} SCOP: c.1.7.1
Probab=21.57 E-value=2.1e+02 Score=24.31 Aligned_cols=56 Identities=13% Similarity=0.234 Sum_probs=40.9
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCC--------CCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Q 023705 168 ALKGLVQKTGFSMEDVLRKYIRYALNEK--------PFNPDLVVNLIQLRKASMLDDSQVAEILNEISR 228 (278)
Q Consensus 168 vLk~L~~KTGFs~~EV~RKYirY~LnEr--------~F~pd~VaDLi~Lrkas~L~D~evaEiLnE~sr 228 (278)
.|+++..|.|-|..+|. |+|+|.-. .=+++-+.+-++.-. .-||++|+++ |+++.+
T Consensus 276 ~l~~ia~~~g~s~aqva---L~w~l~~~~v~~~I~g~~~~~~l~enl~a~~-~~L~~e~~~~-l~~~~~ 339 (346)
T 1lqa_A 276 AYVDIARRHGLDPAQMA---LAFVRRQPFVASTLLGATTMDQLKTNIESLH-LELSEDVLAE-IEAVHQ 339 (346)
T ss_dssp HHHHHHHHTTCCHHHHH---HHHHHTCTTEEEEEECCSSHHHHHHHHGGGG-CCCCHHHHHH-HHHHHH
T ss_pred HHHHHHHHHCcCHHHHH---HHHHHhCCCCeEEEeCCCCHHHHHHHHHhcc-CCCCHHHHHH-HHHHHh
Confidence 78899999999999987 55666543 246788888776532 4799999887 455544
No 169
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=21.53 E-value=2.6e+02 Score=22.29 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=20.1
Q ss_pred CCCcHHHHHHHHHHHHhhhhhcCccccccchhhhhh
Q 023705 213 MLDDSQVAEILNEISRRFVREKDEDALDEQPPMQAL 248 (278)
Q Consensus 213 ~L~D~evaEiLnE~srRiv~~~G~vmmn~~~avqal 248 (278)
.++.+++.+++..+++--.+=++. .|...++..|
T Consensus 276 ~~~~~~l~~~~~~l~~~~~~lk~~--~~~~~~le~l 309 (319)
T 2chq_A 276 PIKDSLKVQLIDKLGEVDFRLTEG--ANERIQLDAY 309 (319)
T ss_dssp CSCTTHHHHHHHHHHHHHHHHHTT--CCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHH
Confidence 378888888887766655544443 3444444333
No 170
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=21.47 E-value=1.1e+02 Score=22.10 Aligned_cols=31 Identities=10% Similarity=0.139 Sum_probs=20.3
Q ss_pred HHHHHHhhcCCCcHHHHHHHH-------HHHHhhhhhcC
Q 023705 204 NLIQLRKASMLDDSQVAEILN-------EISRRFVREKD 235 (278)
Q Consensus 204 DLi~Lrkas~L~D~evaEiLn-------E~srRiv~~~G 235 (278)
+++.|.. -|++..|||+.|+ -.-+|+++|.|
T Consensus 36 ~Vl~l~~-~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 36 LILQEVE-KGFTNQEIADALHLSKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp HHHHHHH-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 3444543 7899999998885 23455666665
No 171
>3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB: 2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A* 3fdk_A* 3htw_A*
Probab=21.47 E-value=65 Score=28.60 Aligned_cols=41 Identities=12% Similarity=0.037 Sum_probs=30.6
Q ss_pred HHHhcCCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhh
Q 023705 189 RYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVR 232 (278)
Q Consensus 189 rY~LnEr~F~pd~VaDLi~Lrkas~L~D~evaEiLnE~srRiv~ 232 (278)
+|--|+-.|-+..+..++.+| |++++|++.++.+-++|+|.
T Consensus 299 ~~g~n~p~~l~~~~~~~~~~~---Gis~e~i~~~~~~Np~rlf~ 339 (339)
T 3gtx_A 299 AVKDWHPLHISDDILPDLRRR---GITEEQVGQMTVGNPARLFG 339 (339)
T ss_dssp HHHTCSTTHHHHTHHHHHHHT---TCCHHHHHHHHTHHHHHHHC
T ss_pred cCCCCCchhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhC
Confidence 344455555566667777654 89999999999999999873
No 172
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=21.46 E-value=64 Score=23.90 Aligned_cols=54 Identities=17% Similarity=0.162 Sum_probs=28.0
Q ss_pred CCCCCch-HHHH-HHHHhCCChHHHHHH------HHHHHhc-CCCCChHHHHHHHHHHhhcCCCcH
Q 023705 161 GDAVNPP-ALKG-LVQKTGFSMEDVLRK------YIRYALN-EKPFNPDLVVNLIQLRKASMLDDS 217 (278)
Q Consensus 161 Rdal~~g-vLk~-L~~KTGFs~~EV~RK------YirY~Ln-Er~F~pd~VaDLi~Lrkas~L~D~ 217 (278)
....++| .|++ +..+.|.|..|+-++ ||...+| ++..+++. +..|=+++|.+.+
T Consensus 9 ~~~~~pG~~Lk~~lr~~~gltq~eLA~~lGis~~~is~ie~G~~~~s~~~---~~kla~~lgvs~~ 71 (104)
T 3trb_A 9 MRPIHPGEILAEELGFLDKMSANQLAKHLAIPTNRVTAILNGARSITADT---ALRLAKFFGTTPE 71 (104)
T ss_dssp CCCCCHHHHHHHHHHHTTSCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHH---HHHHHHHHTCCHH
T ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHH---HHHHHHHHCcCHH
Confidence 3445555 4453 666666666666543 4444444 33445443 3344455666543
No 173
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.37 E-value=1.1e+02 Score=21.28 Aligned_cols=39 Identities=13% Similarity=0.217 Sum_probs=21.6
Q ss_pred CChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhhcCccccccchhhhhhcc
Q 023705 197 FNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKDEDALDEQPPMQALFV 250 (278)
Q Consensus 197 F~pd~VaDLi~Lrkas~L~D~evaEiLnE~srRiv~~~G~vmmn~~~avqalf~ 250 (278)
++++.|..|+.| |.+.+++..+|+.. .| |++.|+.-||.
T Consensus 8 ~~~~~v~~L~~M----GF~~~~a~~AL~~t-------~~----nve~A~e~L~~ 46 (63)
T 2dak_A 8 PPEDCVTTIVSM----GFSRDQALKALRAT-------NN----SLERAVDWIFS 46 (63)
T ss_dssp CCHHHHHHHHHH----TCCHHHHHHHHHHT-------TS----CSHHHHHHHHH
T ss_pred CCHHHHHHHHHc----CCCHHHHHHHHHHc-------CC----CHHHHHHHHHh
Confidence 455566655553 56666655555432 12 56666666665
No 174
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=21.28 E-value=1.6e+02 Score=20.98 Aligned_cols=44 Identities=2% Similarity=0.062 Sum_probs=27.8
Q ss_pred hhhhhcchhhHHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHH
Q 023705 139 RKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDV 183 (278)
Q Consensus 139 RkR~VNKNamLvkSLDeyFp~gRdal~~gvLk~L~~KTGFs~~EV 183 (278)
|++...-...-++.|.++|..+.- .+......|..++|-+...|
T Consensus 29 rr~Rt~ft~~Ql~~Le~~F~~~~y-p~~~~r~~La~~l~l~~~qV 72 (88)
T 2r5y_A 29 KRQRTSYTRYQTLELEKEFHFNRY-LTRRRRIEIAHALSLTERQI 72 (88)
T ss_dssp --CCCCCCHHHHHHHHHHHTTCSS-CCHHHHHHHHHHTTCCHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHhCcCHHHh
Confidence 333334455666777777876553 66777777788887776655
No 175
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=21.26 E-value=42 Score=21.40 Aligned_cols=20 Identities=15% Similarity=0.285 Sum_probs=14.9
Q ss_pred HHHHHHhhcCCCcHHHHHHHH
Q 023705 204 NLIQLRKASMLDDSQVAEILN 224 (278)
Q Consensus 204 DLi~Lrkas~L~D~evaEiLn 224 (278)
+++.| -+-|++..|||+.|+
T Consensus 5 ~vl~l-~~~g~s~~eIA~~l~ 24 (61)
T 2jpc_A 5 QVLKL-IDEGYTNHGISEKLH 24 (61)
T ss_dssp HHHHH-HHTSCCSHHHHHHTC
T ss_pred HHHHH-HHcCCCHHHHHHHhC
Confidence 34555 578999999998874
No 176
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=21.24 E-value=78 Score=21.90 Aligned_cols=37 Identities=8% Similarity=0.099 Sum_probs=19.0
Q ss_pred hhhHHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHH
Q 023705 146 NAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDV 183 (278)
Q Consensus 146 NamLvkSLDeyFp~gRdal~~gvLk~L~~KTGFs~~EV 183 (278)
...-++.|.++|..+. -.+......|..++|-+-..|
T Consensus 25 t~~Ql~~Le~~f~~~~-yp~~~~r~~La~~l~l~~~qV 61 (80)
T 2da3_A 25 TPEQLEILYQKYLLDS-NPTRKMLDHIAHEVGLKKRVV 61 (80)
T ss_dssp CTTTHHHHHHHHHHCS-SCCHHHHHHHHHHHTSCHHHH
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHCcCHHHh
Confidence 3334455555565543 244555555666666555443
No 177
>3b3d_A YTBE protein, putative morphine dehydrogenase; aldo-keto reductase, oxidoreductase; 2.30A {Bacillus subtilis}
Probab=21.23 E-value=1.3e+02 Score=25.97 Aligned_cols=59 Identities=14% Similarity=0.277 Sum_probs=42.0
Q ss_pred CCchHHHHHHHHhCCChHHHHHHHHHHHhcCC------CCChHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Q 023705 164 VNPPALKGLVQKTGFSMEDVLRKYIRYALNEK------PFNPDLVVNLIQLRKASMLDDSQVAEILNEIS 227 (278)
Q Consensus 164 l~~gvLk~L~~KTGFs~~EV~RKYirY~LnEr------~F~pd~VaDLi~Lrkas~L~D~evaEiLnE~s 227 (278)
.+...++.+.+|.|-|..+|. |+|.|... .-+++-+.+-++.-. ..||++|+++| +++.
T Consensus 236 ~~~~~~~~ia~~~g~t~aqva---L~w~l~~~~v~I~G~~~~~~l~eNl~a~~-~~Ls~ee~~~l-d~l~ 300 (314)
T 3b3d_A 236 LDHPVLADIAQTYNKSVAQII---LRWDLQHGIITIPKSTKEHRIKENASVFD-FELTQDDMNRI-DALN 300 (314)
T ss_dssp TTCHHHHHHHHHTTCCHHHHH---HHHHHHTTCEECCBCCCHHHHHHHHCCSS-CCCCHHHHHHH-HTTC
T ss_pred cCchhhHHHHHHcCCCHHHHH---HHHHHhCCCEEEECCCCHHHHHHHHHhcC-CCCCHHHHHHH-hccC
Confidence 466788999999999999997 66777632 236777777664322 36999999776 4443
No 178
>3pao_A Adenosine deaminase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: ADE; 2.49A {Pseudomonas aeruginosa} PDB: 3pan_A* 3ou8_A* 3pbm_A*
Probab=21.16 E-value=4.3e+02 Score=23.30 Aligned_cols=25 Identities=8% Similarity=-0.191 Sum_probs=19.7
Q ss_pred hcCCCcHHHHHHHHHHHHhhhhhcC
Q 023705 211 ASMLDDSQVAEILNEISRRFVREKD 235 (278)
Q Consensus 211 as~L~D~evaEiLnE~srRiv~~~G 235 (278)
.-|++-+++-+++.+-.++--+++|
T Consensus 106 ~~gl~~~~~v~~v~~~~~~a~~~~g 130 (326)
T 3pao_A 106 DRGIPFEVVLAGIRAALRDGEKLLG 130 (326)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHHHHHHHHHhhCc
Confidence 4688888888877777777777777
No 179
>2f6k_A Metal-dependent hydrolase; metal dependent hydrolyse, aminohydro_2, ACMDS, ACMS, trypto metabolism, quinolinic acid, QUIN; 2.50A {Lactobacillus plantarum} SCOP: c.1.9.15
Probab=21.10 E-value=1.1e+02 Score=24.85 Aligned_cols=21 Identities=19% Similarity=0.398 Sum_probs=19.4
Q ss_pred cCCCcHHHHHHHHHHHHhhhh
Q 023705 212 SMLDDSQVAEILNEISRRFVR 232 (278)
Q Consensus 212 s~L~D~evaEiLnE~srRiv~ 232 (278)
.+|++++++.|+.+-++|+|+
T Consensus 286 ~~l~~~~~~~i~~~Na~rl~~ 306 (307)
T 2f6k_A 286 DLLTNEQKQAIFYDNAHRLLT 306 (307)
T ss_dssp TTSCHHHHHHHHTHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhC
Confidence 499999999999999999985
No 180
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=20.96 E-value=1.7e+02 Score=18.68 Aligned_cols=42 Identities=19% Similarity=0.158 Sum_probs=21.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhc-CCCCChHHHHHHHHHHhhcCCCcHHH
Q 023705 170 KGLVQKTGFSMEDVLRKYIRYALN-EKPFNPDLVVNLIQLRKASMLDDSQV 219 (278)
Q Consensus 170 k~L~~KTGFs~~EV~RKYirY~Ln-Er~F~pd~VaDLi~Lrkas~L~D~ev 219 (278)
++|..++|.|.. +|.-..+ ++..+.+ .+..|-+++|++.+++
T Consensus 27 ~~lA~~~gis~~-----~i~~~e~g~~~~~~~---~l~~ia~~l~~~~~~l 69 (76)
T 3bs3_A 27 RWLAEQMGKSEN-----TISRWCSNKSQPSLD---MLVKVAELLNVDPRQL 69 (76)
T ss_dssp HHHHHHHTCCHH-----HHHHHHTTSSCCCHH---HHHHHHHHHTSCGGGG
T ss_pred HHHHHHHCcCHH-----HHHHHHcCCCCCCHH---HHHHHHHHHCcCHHHH
Confidence 344455554432 3333334 4555544 4566667788776553
No 181
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=20.95 E-value=1.3e+02 Score=19.10 Aligned_cols=8 Identities=25% Similarity=-0.031 Sum_probs=2.9
Q ss_pred CCCcHHHH
Q 023705 213 MLDDSQVA 220 (278)
Q Consensus 213 ~L~D~eva 220 (278)
|||-.|+|
T Consensus 21 glsq~~lA 28 (71)
T 2ewt_A 21 GLSLHGVE 28 (71)
T ss_dssp TCCHHHHH
T ss_pred CCCHHHHH
Confidence 33333333
No 182
>3buv_A 3-OXO-5-beta-steroid 4-dehydrogenase; 5-beta-reductase, catalytic tetrad, hepes, NADP, bIle catabolism, disease mutation, lipid metabolism; HET: NAP EPE; 1.35A {Homo sapiens} PDB: 3bur_A* 3bv7_A* 3caq_A* 3cas_A* 3cav_A* 3g1r_A* 3cot_A* 3dop_A* 3cmf_A* 3uzx_A* 3uzw_A* 3uzy_A* 3uzz_A*
Probab=20.82 E-value=1.2e+02 Score=26.15 Aligned_cols=54 Identities=17% Similarity=0.343 Sum_probs=39.4
Q ss_pred CchHHHHHHHHhCCChHHHHHHHHHHHhcC------CCCChHHHHHHHHHHhhcCCCcHHHHHH
Q 023705 165 NPPALKGLVQKTGFSMEDVLRKYIRYALNE------KPFNPDLVVNLIQLRKASMLDDSQVAEI 222 (278)
Q Consensus 165 ~~gvLk~L~~KTGFs~~EV~RKYirY~LnE------r~F~pd~VaDLi~Lrkas~L~D~evaEi 222 (278)
....|++|..|.|-|..+|. |+|.|.- +.-+++-+.+-++.-. ..||++|+++|
T Consensus 240 ~~~~l~~ia~~~g~s~aqva---L~w~l~~~~~~I~g~~~~~~l~en~~~~~-~~L~~e~~~~l 299 (326)
T 3buv_A 240 KDALLNSLGKRYNKTAAQIV---LRFNIQRGVVVIPKSFNLERIKENFQIFD-FSLTEEEMKDI 299 (326)
T ss_dssp GCHHHHHHHHHHTCCHHHHH---HHHHHHTTCEECCBCCSHHHHHHHHCCSS-CCCCHHHHHHH
T ss_pred ccHHHHHHHHHhCCCHHHHH---HHHHHhCCCEEEeCCCCHHHHHHHHhhcC-CCCCHHHHHHH
Confidence 45789999999999999998 5556654 2346677777665322 46999998866
No 183
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.76 E-value=84 Score=21.48 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=23.5
Q ss_pred chhhHHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHH
Q 023705 145 KNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDV 183 (278)
Q Consensus 145 KNamLvkSLDeyFp~gRdal~~gvLk~L~~KTGFs~~EV 183 (278)
-...-++.|.++|..+.- .+......|..++|-+...|
T Consensus 14 ft~~Q~~~Le~~F~~~~y-p~~~~r~~La~~l~l~~~qV 51 (70)
T 2djn_A 14 YSSFQLAALQRRFQKTQY-LALPERAELAASLGLTQTQV 51 (70)
T ss_dssp SCHHHHHHHHHHHTTCSS-CCHHHHHHHHHHSSCCHHHH
T ss_pred CCHHHHHHHHHHHcCCCC-CCHHHHHHHHHHhCCCHHHH
Confidence 344555666677766543 56666667777777666655
No 184
>2wzn_A TET3, 354AA long hypothetical operon protein FRV; protease, hydrolase, thermophilic, SELF-compartmentalising; 1.90A {Pyrococcus horikoshii} PDB: 2pe3_A
Probab=20.76 E-value=69 Score=24.85 Aligned_cols=43 Identities=12% Similarity=0.164 Sum_probs=29.0
Q ss_pred CChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhh-----hhhcCcccc
Q 023705 197 FNPDLVVNLIQLRKASMLDDSQVAEILNEISRRF-----VREKDEDAL 239 (278)
Q Consensus 197 F~pd~VaDLi~Lrkas~L~D~evaEiLnE~srRi-----v~~~G~vmm 239 (278)
-|-+++.+|++.-.-||-++.+|++.|.+.-+.+ ++++|+|+.
T Consensus 10 ~d~elL~~Lv~ipS~sg~E~~~v~~~l~~~l~~~G~~v~~D~~GNlia 57 (354)
T 2wzn_A 10 VDWKLMQEIIEAPGVSGYEHLGIRDIVVDVLKEVADEVKVDKLGNVIA 57 (354)
T ss_dssp CCHHHHHHHHHSCCBTTCGGGTHHHHHHHHHHTTSSEEEECTTCCEEE
T ss_pred hHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHcCCEEEEeCCCeEEE
Confidence 3457788888888888877777887776655543 235566554
No 185
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=20.62 E-value=71 Score=21.42 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=14.6
Q ss_pred HHHHHHHHhh----cCCCcHHHHHHHH
Q 023705 202 VVNLIQLRKA----SMLDDSQVAEILN 224 (278)
Q Consensus 202 VaDLi~Lrka----s~L~D~evaEiLn 224 (278)
-.++|.||-. -|+|..|||++|+
T Consensus 15 er~il~l~~~l~~~~~~s~~eIA~~l~ 41 (73)
T 1ku3_A 15 EAMVLKMRKGLIDGREHTLEEVGAYFG 41 (73)
T ss_dssp HHHHHHHHHTTTTSSCCCHHHHHHHHT
T ss_pred HHHHHHHHHhcccCCCCCHHHHHHHHC
Confidence 3456666665 5677777777664
No 186
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=20.48 E-value=1.9e+02 Score=21.71 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=20.6
Q ss_pred HHHHhCCChHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 023705 172 LVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQL 208 (278)
Q Consensus 172 L~~KTGFs~~EV~RKYirY~LnEr~F~pd~VaDLi~L 208 (278)
|+...|.+..|+++ ||+..-..+.++-..||+.|.+
T Consensus 162 l~~~~~~~~~~~~~-~l~~~~~~~~~s~~~iA~~l~~ 197 (205)
T 1s8n_A 162 LQTKHGMTEPDAFK-WIQRAAMDRRTTMKRVAEVVLE 197 (205)
T ss_dssp HHHHHCCCHHHHHH-HHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHhhCCCHHHHHH-HHHHHHHhcCCCHHHHHHHHHH
Confidence 34455788777766 5554333344666666665554
No 187
>2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens}
Probab=20.47 E-value=1.2e+02 Score=24.40 Aligned_cols=24 Identities=8% Similarity=0.167 Sum_probs=20.7
Q ss_pred hhcCCCcHHHHHHHHHHHHhhhhh
Q 023705 210 KASMLDDSQVAEILNEISRRFVRE 233 (278)
Q Consensus 210 kas~L~D~evaEiLnE~srRiv~~ 233 (278)
+..|++++++++++.+-++|++.-
T Consensus 242 ~~~g~~~e~~~~~~~~N~~~l~~~ 265 (272)
T 2y1h_A 242 QVKGISVEEVIEVTTQNALKLFPK 265 (272)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHSTT
T ss_pred HHHCcCHHHHHHHHHHHHHHHHHh
Confidence 345999999999999999999853
No 188
>4gie_A Prostaglandin F synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: NAP; 1.25A {Trypanosoma cruzi} PDB: 4fzi_A*
Probab=20.32 E-value=1.4e+02 Score=25.47 Aligned_cols=58 Identities=17% Similarity=0.280 Sum_probs=40.5
Q ss_pred CchHHHHHHHHhCCChHHHHHHHHHHHhcCC------CCChHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Q 023705 165 NPPALKGLVQKTGFSMEDVLRKYIRYALNEK------PFNPDLVVNLIQLRKASMLDDSQVAEILNEIS 227 (278)
Q Consensus 165 ~~gvLk~L~~KTGFs~~EV~RKYirY~LnEr------~F~pd~VaDLi~Lrkas~L~D~evaEiLnE~s 227 (278)
...+|+++..|.|-|..+|. |+|.|.-. .=+++-+.+-++.-. ..||++|+++| +++.
T Consensus 209 ~~~~l~~iA~~~g~t~aqva---L~w~l~~~~v~I~G~~~~~~l~eNl~a~~-~~Ls~ee~~~l-d~l~ 272 (290)
T 4gie_A 209 KNHVLGEIAKKHNKSPAQVV---IRWDIQHGIVTIPKSTNKGRIQENFNVWD-FKLTEEEMRQI-DELN 272 (290)
T ss_dssp GCHHHHHHHHHHTCCHHHHH---HHHHHHTTCEECCBCCSHHHHHHHHCCSS-CCCCHHHHHHH-HTTC
T ss_pred hhHHHHHHHHHhCCCHHHHH---HHHHHhCCCEEEECCCCHHHHHHHHhhcC-CCCCHHHHHHH-hccC
Confidence 45789999999999999997 56667532 235666766664322 46999998775 4443
No 189
>3iz5_v 60S acidic ribosomal protein P21 - P2 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_v
Probab=20.28 E-value=22 Score=28.44 Aligned_cols=11 Identities=9% Similarity=0.226 Sum_probs=0.0
Q ss_pred hhhHHHHhcch
Q 023705 66 EVEVEVEEELP 76 (278)
Q Consensus 66 e~e~e~e~e~~ 76 (278)
|++||.+++|.
T Consensus 98 ee~EEsDdDmG 108 (113)
T 3iz5_v 98 VEKEESDDDMG 108 (113)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 33344455664
No 190
>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}
Probab=20.19 E-value=67 Score=27.22 Aligned_cols=42 Identities=17% Similarity=-0.013 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHhhcCCCcHHHHHHHHHHH----HhhhhhcCccccc
Q 023705 199 PDLVVNLIQLRKASMLDDSQVAEILNEIS----RRFVREKDEDALD 240 (278)
Q Consensus 199 pd~VaDLi~Lrkas~L~D~evaEiLnE~s----rRiv~~~G~vmmn 240 (278)
-..+++.++|=...|++.+++.++++..+ -++++.|++.|.+
T Consensus 187 ~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 232 (306)
T 3l6d_A 187 MVTFFEAVGAGDRFGLPVSKTARLLLETSRFFVADALEEAVRRLET 232 (306)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcccHHHHHHHHHHhc
Confidence 46788888888999999999999999864 4677777765553
No 191
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=20.15 E-value=1.5e+02 Score=20.50 Aligned_cols=29 Identities=7% Similarity=0.345 Sum_probs=18.3
Q ss_pred CCCChHHHHHHHHHHhhcCCCcHHHHHHHH
Q 023705 195 KPFNPDLVVNLIQLRKASMLDDSQVAEILN 224 (278)
Q Consensus 195 r~F~pd~VaDLi~Lrkas~L~D~evaEiLn 224 (278)
++++++.-..++.|.. .|++-.+||+.|+
T Consensus 16 ~~~s~~~r~~i~~~~~-~g~s~~~ia~~lg 44 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMAA-DGIRPCVISRQLR 44 (128)
T ss_dssp SCCCHHHHHHHHHHHH-TTCCHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHH-cCCCHHHHHHHHC
Confidence 4566666666666653 5677777776664
No 192
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=20.11 E-value=44 Score=26.10 Aligned_cols=55 Identities=11% Similarity=0.275 Sum_probs=43.3
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhhhhhcCc----cccccchhhhhhcccCCccchhhhhhhcc
Q 023705 208 LRKASMLDDSQVAEILNEISRRFVREKDE----DALDEQPPMQALFVFDPVHNICCFLHMKW 265 (278)
Q Consensus 208 Lrkas~L~D~evaEiLnE~srRiv~~~G~----vmmn~~~avqalf~~~~~~~~~~~~~~~~ 265 (278)
++.-.++++++.++++.++++.+.+-.|- +|+.+. ..+-.||-. ..-|||++.+.
T Consensus 27 i~tnv~~~~~~~~~l~~~ls~~la~~lgKPe~~vmV~v~-~~~m~fgGs--~dp~a~v~i~s 85 (135)
T 3t5s_A 27 VTTNADFTKDQADAFCLDMGQVLAKETGKPVSYCMAGVR-KADMSFGTS--TDLCCFVDFYC 85 (135)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHHHCSCGGGCEEEEE-ECCCCBTTB--CCSCEEEEEEC
T ss_pred EEecCccchhccchhHHHHHHHHHHhhCCchHHHHhhhh-hhhcccCcc--cceEEEEEEEE
Confidence 44455788899999999999999988775 788888 888888864 36688887664
Done!