BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023706
(278 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GZN|B Chain B, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
pdb|3GZN|D Chain D, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
Length = 463
Score = 195 bits (496), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 100/239 (41%), Positives = 140/239 (58%), Gaps = 8/239 (3%)
Query: 1 MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIK 60
++DGGTEGFKG+ARVI+PG+T C ECT+ L+PPQV FP+CT+A PR HCIEY +++
Sbjct: 198 LIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQ 257
Query: 61 WDEVH---SGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKXXXXXXXXXX 117
W + G D DDPEH+QW++ ++++RA + I GVTY LTQGVVK
Sbjct: 258 WPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTN 317
Query: 118 XXXXXXCALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGP-GVLIELD 176
CA E KIA+ L+NYL +N V GL+ E + ++C C I+
Sbjct: 318 AVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFS 377
Query: 177 TSVTLEKFINLLEEHPKLQLAKASV--TYRGKN--LYMQAPPVLEEMTRSNLSLPLYDL 231
S L++ ++ L LQ+ ++ T GKN LY+Q+ +EE TR NLS L +L
Sbjct: 378 PSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKEL 436
>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 805
Score = 195 bits (496), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 100/239 (41%), Positives = 140/239 (58%), Gaps = 8/239 (3%)
Query: 1 MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIK 60
++DGGTEGFKG+ARVI+PG+T C ECT+ L+PPQV FP+CT+A PR HCIEY +++
Sbjct: 540 LIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQ 599
Query: 61 WDEVH---SGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKXXXXXXXXXX 117
W + G D DDPEH+QW++ ++++RA + I GVTY LTQGVVK
Sbjct: 600 WPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTN 659
Query: 118 XXXXXXCALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGP-GVLIELD 176
CA E KIA+ L+NYL +N V GL+ E + ++C C I+
Sbjct: 660 AVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFS 719
Query: 177 TSVTLEKFINLLEEHPKLQLAKASV--TYRGKN--LYMQAPPVLEEMTRSNLSLPLYDL 231
S L++ ++ L LQ+ ++ T GKN LY+Q+ +EE TR NLS L +L
Sbjct: 720 PSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKEL 778
>pdb|1TT5|B Chain B, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|1TT5|D Chain D, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
Length = 434
Score = 195 bits (495), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 100/239 (41%), Positives = 140/239 (58%), Gaps = 8/239 (3%)
Query: 1 MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIK 60
++DGGTEGFKG+ARVI+PG+T C ECT+ L+PPQV FP+CT+A PR HCIEY +++
Sbjct: 169 LIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQ 228
Query: 61 WDEVH---SGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKXXXXXXXXXX 117
W + G D DDPEH+QW++ ++++RA + I GVTY LTQGVVK
Sbjct: 229 WPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTN 288
Query: 118 XXXXXXCALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGP-GVLIELD 176
CA E KIA+ L+NYL +N V GL+ E + ++C C I+
Sbjct: 289 AVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFS 348
Query: 177 TSVTLEKFINLLEEHPKLQLAKASV--TYRGKN--LYMQAPPVLEEMTRSNLSLPLYDL 231
S L++ ++ L LQ+ ++ T GKN LY+Q+ +EE TR NLS L +L
Sbjct: 349 PSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKEL 407
>pdb|1YOV|B Chain B, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
pdb|1YOV|D Chain D, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
Length = 444
Score = 195 bits (495), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 100/239 (41%), Positives = 140/239 (58%), Gaps = 8/239 (3%)
Query: 1 MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIK 60
++DGGTEGFKG+ARVI+PG+T C ECT+ L+PPQV FP+CT+A PR HCIEY +++
Sbjct: 179 LIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQ 238
Query: 61 WDEVH---SGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKXXXXXXXXXX 117
W + G D DDPEH+QW++ ++++RA + I GVTY LTQGVVK
Sbjct: 239 WPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTN 298
Query: 118 XXXXXXCALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGP-GVLIELD 176
CA E KIA+ L+NYL +N V GL+ E + ++C C I+
Sbjct: 299 AVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFS 358
Query: 177 TSVTLEKFINLLEEHPKLQLAKASV--TYRGKN--LYMQAPPVLEEMTRSNLSLPLYDL 231
S L++ ++ L LQ+ ++ T GKN LY+Q+ +EE TR NLS L +L
Sbjct: 359 PSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKEL 417
>pdb|1R4M|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
Length = 431
Score = 192 bits (487), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 99/239 (41%), Positives = 139/239 (58%), Gaps = 8/239 (3%)
Query: 1 MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIK 60
++DGGTEGFKG+ARVI+PG+T C ECT+ L+PPQV FP+ T+A PR HCIEY +++
Sbjct: 166 LIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMATIASMPRLPEHCIEYVRMLQ 225
Query: 61 WDEVH---SGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKXXXXXXXXXX 117
W + G D DDPEH+QW++ ++++RA + I GVTY LTQGVVK
Sbjct: 226 WPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTN 285
Query: 118 XXXXXXCALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGP-GVLIELD 176
CA E KIA+ L+NYL +N V GL+ E + ++C C I+
Sbjct: 286 AVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFS 345
Query: 177 TSVTLEKFINLLEEHPKLQLAKASV--TYRGKN--LYMQAPPVLEEMTRSNLSLPLYDL 231
S L++ ++ L LQ+ ++ T GKN LY+Q+ +EE TR NLS L +L
Sbjct: 346 PSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKEL 404
>pdb|3DBL|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
Length = 434
Score = 192 bits (487), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 99/239 (41%), Positives = 139/239 (58%), Gaps = 8/239 (3%)
Query: 1 MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIK 60
++DGGTEGFKG+ARVI+PG+T C ECT+ L+PPQV FP+ T+A PR HCIEY +++
Sbjct: 169 LIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMATIASMPRLPEHCIEYVRMLQ 228
Query: 61 WDEVH---SGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKXXXXXXXXXX 117
W + G D DDPEH+QW++ ++++RA + I GVTY LTQGVVK
Sbjct: 229 WPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTN 288
Query: 118 XXXXXXCALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGP-GVLIELD 176
CA E KIA+ L+NYL +N V GL+ E + ++C C I+
Sbjct: 289 AVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFS 348
Query: 177 TSVTLEKFINLLEEHPKLQLAKASV--TYRGKN--LYMQAPPVLEEMTRSNLSLPLYDL 231
S L++ ++ L LQ+ ++ T GKN LY+Q+ +EE TR NLS L +L
Sbjct: 349 PSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKEL 407
>pdb|3DBR|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 434
Score = 190 bits (482), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 139/239 (58%), Gaps = 8/239 (3%)
Query: 1 MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIK 60
++DGGTEGFKG+A+VI+PG+T C ECT+ L+PPQV FP+ T+A PR HCIEY +++
Sbjct: 169 LIDGGTEGFKGNAQVILPGMTACIECTLELYPPQVNFPMATIASMPRLPEHCIEYVRMLQ 228
Query: 61 WDEVH---SGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKXXXXXXXXXX 117
W + G D DDPEH+QW++ ++++RA + I GVTY LTQGVVK
Sbjct: 229 WPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTN 288
Query: 118 XXXXXXCALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGP-GVLIELD 176
CA E KIA+ L+NYL +N V GL+ E + ++C C I+
Sbjct: 289 AVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFS 348
Query: 177 TSVTLEKFINLLEEHPKLQLAKASV--TYRGKN--LYMQAPPVLEEMTRSNLSLPLYDL 231
S L++ ++ L LQ+ ++ T GKN LY+Q+ +EE TR NLS L +L
Sbjct: 349 PSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKEL 407
>pdb|3DBH|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
Length = 434
Score = 189 bits (479), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 138/239 (57%), Gaps = 8/239 (3%)
Query: 1 MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIK 60
++DGGTEGFKG+A VI+PG+T C ECT+ L+PPQV FP+ T+A PR HCIEY +++
Sbjct: 169 LIDGGTEGFKGNAAVILPGMTACIECTLELYPPQVNFPMATIASMPRLPEHCIEYVRMLQ 228
Query: 61 WDEVH---SGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKXXXXXXXXXX 117
W + G D DDPEH+QW++ ++++RA + I GVTY LTQGVVK
Sbjct: 229 WPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTN 288
Query: 118 XXXXXXCALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGP-GVLIELD 176
CA E KIA+ L+NYL +N V GL+ E + ++C C I+
Sbjct: 289 AVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFS 348
Query: 177 TSVTLEKFINLLEEHPKLQLAKASV--TYRGKN--LYMQAPPVLEEMTRSNLSLPLYDL 231
S L++ ++ L LQ+ ++ T GKN LY+Q+ +EE TR NLS L +L
Sbjct: 349 PSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKEL 407
>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic
Length = 660
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 1 MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLI- 59
+++ GT G+ G I GVT C+EC P Q FP CT+ TP HCI +A +
Sbjct: 156 LIESGTAGYLGQVTTIKKGVTECYECHPK--PTQRTFPGCTIRNTPSEPIHCIVWAKYLF 213
Query: 60 --KWDEVHSGKSFDPD--DPEHMQWVYSEAVKRA 89
+ E + + PD DPE W +EA RA
Sbjct: 214 NQLFGEEDADQEVSPDRADPE-AAWEPTEAEARA 246
>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 551
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 1 MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLI- 59
+++ GT G+ G I GVT C+EC P Q FP CT+ TP HCI +A +
Sbjct: 138 LIESGTAGYLGQVTTIKKGVTECYECHPK--PTQRTFPGCTIRNTPSEPIHCIVWAKYLF 195
Query: 60 --KWDEVHSGKSFDPD--DPEHMQWVYSEAVKRA 89
+ E + + PD DPE W +EA RA
Sbjct: 196 NQLFGEEDADQEVSPDRADPE-AAWEPTEAEARA 228
>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|E Chain E, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
Length = 640
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 1 MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLI- 59
+++ GT G+ G I GVT C+EC P Q FP T+ TP HCI +A +
Sbjct: 136 LIESGTAGYLGQVTTIKKGVTECYECHPK--PTQRTFPGATIRNTPSEPIHCIVWAKYLF 193
Query: 60 --KWDEVHSGKSFDPD--DPEHMQWVYSEAVKRA 89
+ E + + PD DPE W +EA RA
Sbjct: 194 NQLFGEEDADQEVSPDRADPE-AAWEPTEAEARA 226
>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex
pdb|3CMM|C Chain C, Crystal Structure Of The Uba1-Ubiquitin Complex
Length = 1015
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 1 MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYA 56
+++ GT G KG+ +VIIP +T + + PP+ PLCTL P H I +A
Sbjct: 554 LLESGTLGTKGNTQVIIPRLTESYSSS--RDPPEKSIPLCTLRSFPNKIDHTIAWA 607
>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
pdb|4II3|A Chain A, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
pdb|4II3|C Chain C, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
Length = 1001
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 1 MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAH 57
+++ GT G KG+ +V++P +T + + PP+ FP+CTL P H I +A
Sbjct: 545 LLESGTLGTKGNTQVVVPHLTESYGSSQD--PPEKSFPICTLKNFPNRIEHTIAWAR 599
>pdb|2LQ7|A Chain A, E2 Binding Surface On Uba3 Beta-Grasp Domain Undergoes A
Conformational Transition
Length = 97
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 173 IELDTSVTLEKFINLLEEHPKLQLAKASVT--YRGKN--LYMQAPPVLEEMTRSNLSLPL 228
I+ S L++ ++ L LQ+ ++T GKN LY+Q+ +EE TR NLS L
Sbjct: 8 IQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTL 67
Query: 229 YDL 231
+L
Sbjct: 68 KEL 70
>pdb|1Y8X|B Chain B, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
pdb|3FN1|A Chain A, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 98
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 173 IELDTSVTLEKFINLLEEHPKLQLAKASVT--YRGKN--LYMQAPPVLEEMTRSNLSLPL 228
I+ S L++ ++ L LQ ++T GKN LY Q+ +EE TR NLS L
Sbjct: 9 IQFSPSAKLQEVLDYLTNSASLQXKSPAITATLEGKNRTLYXQSVTSIEERTRPNLSKTL 68
Query: 229 YDL 231
+L
Sbjct: 69 KEL 71
>pdb|2PX9|A Chain A, The Intrinsic Affinity Between E2 And The Cys Domain Of
E1 In Ubiquitin-Like Modifications
Length = 217
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 34 QVKFPLCTLAETPRTAAHCIEYAHLI---KWDEVHSGKSFDPD--DPEHMQWVYSEAVKR 88
Q FP CT+ TP HCI +A + + E + + PD DPE W +EA R
Sbjct: 2 QRTFPGCTIRNTPSEPIHCIVWAKYLFNQLFGEEDADQEVSPDRADPEAA-WEPTEAEAR 60
Query: 89 A 89
A
Sbjct: 61 A 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,316,615
Number of Sequences: 62578
Number of extensions: 325991
Number of successful extensions: 690
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 642
Number of HSP's gapped (non-prelim): 23
length of query: 278
length of database: 14,973,337
effective HSP length: 98
effective length of query: 180
effective length of database: 8,840,693
effective search space: 1591324740
effective search space used: 1591324740
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)