Query 023706
Match_columns 278
No_of_seqs 219 out of 1539
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 06:02:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023706.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023706hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2015 NEDD8-activating compl 100.0 6.5E-57 1.4E-61 407.5 15.9 252 1-263 167-421 (422)
2 KOG2013 SMT3/SUMO-activating c 100.0 3.3E-52 7.2E-57 392.4 14.3 247 1-269 131-527 (603)
3 TIGR01408 Ube1 ubiquitin-activ 100.0 4.6E-51 1E-55 424.2 18.4 158 68-236 804-973 (1008)
4 cd01490 Ube1_repeat2 Ubiquitin 100.0 9.4E-51 2E-55 388.7 17.4 205 1-213 126-426 (435)
5 cd01488 Uba3_RUB Ubiquitin act 100.0 1.2E-49 2.5E-54 364.7 15.6 168 1-168 124-291 (291)
6 KOG2012 Ubiquitin activating e 100.0 2.8E-49 6.1E-54 390.4 12.6 223 1-236 557-979 (1013)
7 cd01489 Uba2_SUMO Ubiquitin ac 100.0 5.6E-45 1.2E-49 337.0 12.3 165 1-167 118-312 (312)
8 cd01484 E1-2_like Ubiquitin ac 100.0 2.2E-40 4.7E-45 295.7 10.8 116 1-129 119-234 (234)
9 PF02134 UBACT: Repeat in ubiq 99.9 1.7E-23 3.7E-28 152.1 6.1 67 69-135 1-67 (67)
10 PF10585 UBA_e1_thiolCys: Ubiq 99.7 5.2E-18 1.1E-22 113.6 -1.2 44 19-65 1-44 (45)
11 PF08825 E2_bind: E2 binding d 99.7 1.4E-16 3.1E-21 120.5 6.3 84 173-264 1-84 (84)
12 PRK08762 molybdopterin biosynt 99.4 7.8E-13 1.7E-17 126.0 10.9 101 1-169 253-358 (376)
13 PRK07411 hypothetical protein; 99.4 2.2E-12 4.8E-17 123.5 10.6 101 1-169 156-257 (390)
14 PRK12475 thiamine/molybdopteri 99.4 2.6E-12 5.6E-17 120.9 10.5 100 1-169 144-245 (338)
15 PF05237 MoeZ_MoeB: MoeZ/MoeB 99.3 1.2E-12 2.6E-17 99.2 5.5 58 111-169 24-82 (84)
16 PRK05597 molybdopterin biosynt 99.3 7.6E-12 1.6E-16 118.5 10.1 97 1-165 146-243 (355)
17 TIGR02355 moeB molybdopterin s 99.3 1.3E-11 2.8E-16 111.0 10.4 97 1-167 142-240 (240)
18 PRK05600 thiamine biosynthesis 99.3 2.4E-11 5.1E-16 115.7 12.0 122 1-191 159-285 (370)
19 PRK07688 thiamine/molybdopteri 99.3 1.9E-11 4.2E-16 115.0 10.6 99 1-169 144-245 (339)
20 TIGR03603 cyclo_dehy_ocin bact 99.3 2.7E-11 5.9E-16 113.1 11.3 77 111-189 238-317 (318)
21 PRK05690 molybdopterin biosynt 99.2 7.8E-11 1.7E-15 106.2 10.1 94 1-164 150-245 (245)
22 PRK07878 molybdopterin biosynt 99.2 1.6E-10 3.4E-15 110.9 10.2 97 1-165 160-261 (392)
23 KOG2017 Molybdopterin synthase 99.1 9.7E-11 2.1E-15 108.5 7.5 101 1-169 184-286 (427)
24 PF09358 UBA_e1_C: Ubiquitin-a 99.1 1.2E-10 2.7E-15 94.6 6.9 80 170-265 34-114 (125)
25 PF14732 UAE_UbL: Ubiquitin/SU 99.1 4.8E-10 1.1E-14 85.5 7.4 82 173-267 2-85 (87)
26 PRK08328 hypothetical protein; 99.0 2E-09 4.2E-14 96.3 9.1 77 1-149 146-223 (231)
27 PRK08223 hypothetical protein; 98.9 1.2E-08 2.6E-13 93.8 10.0 97 1-149 147-256 (287)
28 cd00757 ThiF_MoeB_HesA_family 98.8 2.8E-08 6E-13 88.5 10.0 87 1-156 139-226 (228)
29 TIGR02356 adenyl_thiF thiazole 98.8 1E-08 2.2E-13 89.8 6.4 63 1-132 139-202 (202)
30 COG0476 ThiF Dinucleotide-util 98.7 3.5E-08 7.7E-13 89.1 8.4 101 1-168 148-253 (254)
31 KOG2336 Molybdopterin biosynth 98.0 5.3E-06 1.1E-10 75.6 4.5 53 111-165 261-313 (422)
32 cd01491 Ube1_repeat1 Ubiquitin 97.9 1.4E-05 3.1E-10 73.7 5.4 126 1-150 133-281 (286)
33 TIGR01408 Ube1 ubiquitin-activ 97.3 0.00021 4.5E-09 76.2 4.0 108 1-110 546-750 (1008)
34 TIGR03736 PRTRC_ThiF PRTRC sys 96.8 0.0022 4.8E-08 57.9 5.6 43 1-43 137-193 (244)
35 PRK14852 hypothetical protein; 96.4 0.0044 9.5E-08 65.6 5.1 95 1-137 452-546 (989)
36 PRK08644 thiamine biosynthesis 96.3 0.007 1.5E-07 53.4 5.1 27 110-136 184-210 (212)
37 TIGR01381 E1_like_apg7 E1-like 96.2 0.024 5.3E-07 57.6 9.3 24 113-136 540-563 (664)
38 KOG2014 SMT3/SUMO-activating c 96.0 0.011 2.4E-07 54.7 5.0 47 105-151 276-322 (331)
39 TIGR03693 ocin_ThiF_like putat 95.9 0.013 2.9E-07 59.1 5.6 52 115-168 282-335 (637)
40 KOG2012 Ubiquitin activating e 95.7 0.0081 1.8E-07 62.0 3.2 28 69-96 715-742 (1013)
41 cd01485 E1-1_like Ubiquitin ac 94.8 0.051 1.1E-06 47.4 5.0 62 85-148 130-191 (198)
42 cd01492 Aos1_SUMO Ubiquitin ac 94.7 0.046 1E-06 47.7 4.6 37 113-149 155-191 (197)
43 cd01490 Ube1_repeat2 Ubiquitin 94.7 0.045 9.7E-07 53.5 4.9 30 70-99 250-279 (435)
44 PRK14851 hypothetical protein; 93.3 0.2 4.2E-06 51.8 6.7 29 1-30 163-191 (679)
45 cd01493 APPBP1_RUB Ubiquitin a 91.9 0.27 5.9E-06 48.0 5.3 37 114-150 384-420 (425)
46 cd01487 E1_ThiF_like E1_ThiF_l 86.6 0.91 2E-05 38.7 4.0 20 110-129 155-174 (174)
47 PF11543 UN_NPL4: Nuclear pore 84.8 0.67 1.5E-05 34.6 2.0 60 170-240 15-75 (80)
48 TIGR02354 thiF_fam2 thiamine b 83.7 1.6 3.4E-05 38.1 4.2 23 110-132 178-200 (200)
49 KOG2016 NEDD8-activating compl 81.7 1.3 2.8E-05 43.3 3.1 37 113-149 479-515 (523)
50 PRK07877 hypothetical protein; 77.0 5.1 0.00011 41.8 5.9 27 110-136 299-325 (722)
51 PF11976 Rad60-SLD: Ubiquitin- 64.9 19 0.00042 25.3 5.1 56 170-240 12-68 (72)
52 cd01812 BAG1_N Ubiquitin-like 63.9 19 0.0004 25.2 4.9 52 171-236 12-64 (71)
53 cd01763 Sumo Small ubiquitin-r 60.3 24 0.00053 26.3 5.1 55 170-240 23-78 (87)
54 cd01800 SF3a120_C Ubiquitin-li 54.7 25 0.00054 25.4 4.3 59 164-236 3-62 (76)
55 cd01796 DDI1_N DNA damage indu 52.9 23 0.0005 25.3 3.8 52 171-235 12-64 (71)
56 PF11470 TUG-UBL1: GLUT4 regul 47.3 32 0.0007 24.6 3.7 36 170-205 8-43 (65)
57 smart00455 RBD Raf-like Ras-bi 47.2 27 0.00058 25.2 3.3 34 170-203 11-44 (70)
58 smart00213 UBQ Ubiquitin homol 44.6 34 0.00075 22.9 3.5 24 171-194 12-35 (64)
59 PF00240 ubiquitin: Ubiquitin 42.1 48 0.001 22.9 4.0 52 171-236 8-60 (69)
60 cd01798 parkin_N amino-termina 41.5 38 0.00083 23.8 3.4 53 170-236 10-63 (70)
61 PF14560 Ubiquitin_2: Ubiquiti 40.5 38 0.00082 25.1 3.4 68 170-252 15-84 (87)
62 cd00196 UBQ Ubiquitin-like pro 40.5 46 0.001 20.8 3.5 23 171-193 10-32 (69)
63 cd01807 GDX_N ubiquitin-like d 38.8 49 0.0011 23.6 3.7 53 170-236 12-65 (74)
64 cd01793 Fubi Fubi ubiquitin-li 38.4 48 0.0011 23.6 3.6 52 171-236 11-63 (74)
65 cd01493 APPBP1_RUB Ubiquitin a 38.2 26 0.00056 34.3 2.7 27 1-28 140-166 (425)
66 cd01782 AF6_RA_repeat1 Ubiquit 37.7 43 0.00094 26.6 3.3 39 172-212 39-77 (112)
67 PF02196 RBD: Raf-like Ras-bin 37.7 42 0.0009 24.2 3.1 33 170-202 12-44 (71)
68 cd01810 ISG15_repeat2 ISG15 ub 35.8 52 0.0011 23.5 3.4 53 170-236 10-63 (74)
69 cd01794 DC_UbP_C dendritic cel 34.6 63 0.0014 23.1 3.6 24 170-193 10-33 (70)
70 cd01806 Nedd8 Nebb8-like ubiq 33.5 86 0.0019 21.9 4.3 53 170-236 12-65 (76)
71 cd01805 RAD23_N Ubiquitin-like 33.2 76 0.0017 22.4 3.9 53 170-236 12-67 (77)
72 cd01808 hPLIC_N Ubiquitin-like 32.6 68 0.0015 22.6 3.5 51 172-236 13-64 (71)
73 cd01809 Scythe_N Ubiquitin-lik 31.3 78 0.0017 21.9 3.7 52 171-236 13-65 (72)
74 cd01813 UBP_N UBP ubiquitin pr 30.5 88 0.0019 22.6 3.9 54 171-236 12-67 (74)
75 cd01791 Ubl5 UBL5 ubiquitin-li 29.6 81 0.0018 22.8 3.5 53 170-236 13-66 (73)
76 cd01760 RBD Ubiquitin-like dom 29.3 77 0.0017 23.1 3.3 32 170-201 11-42 (72)
77 cd01789 Alp11_N Ubiquitin-like 29.2 71 0.0015 23.6 3.2 64 170-251 14-81 (84)
78 cd01799 Hoil1_N Ubiquitin-like 29.0 1E+02 0.0022 22.3 4.0 27 168-194 12-38 (75)
79 cd01803 Ubiquitin Ubiquitin. U 28.3 85 0.0018 21.9 3.5 53 170-236 12-65 (76)
80 cd01802 AN1_N ubiquitin-like d 27.5 95 0.0021 24.1 3.8 53 170-236 39-92 (103)
81 cd01804 midnolin_N Ubiquitin-l 26.1 81 0.0017 22.9 3.0 51 171-236 14-65 (78)
82 KOG0275 Conserved WD40 repeat- 25.2 42 0.00091 31.9 1.6 48 8-58 367-414 (508)
83 PTZ00044 ubiquitin; Provisiona 23.7 1.2E+02 0.0026 21.4 3.5 51 171-235 13-64 (76)
84 cd01769 UBL Ubiquitin-like dom 23.0 1.1E+02 0.0023 20.6 3.1 23 171-193 10-32 (69)
No 1
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-57 Score=407.55 Aligned_cols=252 Identities=46% Similarity=0.786 Sum_probs=240.1
Q ss_pred CEEeeecCcceEEEEEcCCCCCcccccCCCCCCCCCCCcccccCCCCCcchhhhhhhhhhhcccCCC-CccCCCChHHHH
Q 023706 1 MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSG-KSFDPDDPEHMQ 79 (278)
Q Consensus 1 LIe~Gt~G~~G~v~vi~p~~t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~HcI~wa~~~~~~~~~~~-~~FdkDd~~hi~ 79 (278)
||||||+|||||+++|+|+.|+|++|+.+++|++.++|+|||.|+|+.|||||+|++.+.|+++++. ..+|.||+.||+
T Consensus 167 lIDGGtEG~KG~arvI~Pg~TaCieCtldlyppqvs~P~CTiAntPRlpEHciEyv~liqwpe~~~~g~~~~gdd~~hI~ 246 (422)
T KOG2015|consen 167 LIDGGTEGFKGHARVIYPGITACIECTLDLYPPQVSYPMCTIANTPRLPEHCIEYVKLIQWPELNPFGVPLDGDDPEHIE 246 (422)
T ss_pred eeecCcccccceeEEEecCccHHHHhHHhhcCcccCcccceecCCCCCchHhhhhhhhhcchhhCccCCCCCCCCHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999999999987 789999999999
Q ss_pred HHHHHHHHHHHHhCCCCccchhhhhhhccccccccchhhhHHHHHHHHHHHHHhcCCCCCcceEEEecCCCceeeeeecc
Q 023706 80 WVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFV 159 (278)
Q Consensus 80 fI~aaanlRA~~y~I~~~~~~~~k~iag~IIPAIaTT~AiVagl~~~E~~K~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (278)
||+..++.||..|+|.++++..+.|++.+||||+|||||+||+.+++|++|+++....+++|||+|++..|.+.+++.++
T Consensus 247 wi~er~~eRA~ef~I~gv~~~lvtGvvK~IIPaVasTNA~IAA~Ca~ea~Kl~t~~~~~~~Nym~~n~~eG~ytytf~~e 326 (422)
T KOG2015|consen 247 WIVERSNERANEFNITGVTRRLVTGVVKRIIPAVASTNAVIAAVCATEALKLLTATDDPLDNYMNYNAEEGIYTYTFLLE 326 (422)
T ss_pred HHHHHHHHHhhhcccccchHHhhhhhHHhhcchhhhhhHHHHHHHHHHHHHHHHhcchhhhhheeeecccceeEEEeeec
Confidence 99999999999999999999999999999999999999999999999999999998888899999999999999999999
Q ss_pred cCCCCccCCC-cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeC-CcEEEeeCCCchhhhhccccCCcHHHhhccccc
Q 023706 160 KDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYR-GKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVAK 237 (278)
Q Consensus 160 ~~p~C~vC~~-~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g-~~~lY~~~~~~~~~~~~~~l~~~l~~lv~~~~~ 237 (278)
+.++|++|+. ...+++.+..||+++++++.+.| +|+.|.++.- ...||+++++.+++++|+||.++|.+| .+|
T Consensus 327 r~~nC~vCS~~~~~~~ispt~tl~~vl~~ls~~~--~lk~p~~tt~~~~~ly~~~~~~~e~~t~~nl~~~l~~l-~dg-- 401 (422)
T KOG2015|consen 327 RDKNCPVCSNLVQNYDISPTVTLEDVLNHLSKSF--QLKSPALTTAAGRTLYLSSVPSIEEATRKNLSQSLKEL-SDG-- 401 (422)
T ss_pred cCCCCccccCCCcccccCCcccHHHHHHHhhhhh--ccCCchhhhhhcceEeecCCcHHHHHhhhhhhhhHHHh-cCC--
Confidence 9999999998 77788888899999999999887 8999998754 378999998999999999999999999 888
Q ss_pred ceeeeccccccccCCcceEEEEEEEE
Q 023706 238 DILHVTGVTGQSDKKTSCLRKLRVVF 263 (278)
Q Consensus 238 ~~~~~~~~~~v~d~~~~~~~~l~~~~ 263 (278)
++| +|+|...+..+.|++++
T Consensus 402 ~~l------~vtd~~~~~~l~~~l~~ 421 (422)
T KOG2015|consen 402 QEL------VVTDKTLSTALTLQLRE 421 (422)
T ss_pred ceE------EEecccCCcceeEEEec
Confidence 899 99999999999999987
No 2
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-52 Score=392.38 Aligned_cols=247 Identities=28% Similarity=0.454 Sum_probs=191.2
Q ss_pred CEEeeecCcceEEEEEcCCCCCcccccCCCCCCCCCCCcccccCCCCCcchhhhhhhhhhhcccC---------------
Q 023706 1 MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH--------------- 65 (278)
Q Consensus 1 LIe~Gt~G~~G~v~vi~p~~t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~HcI~wa~~~~~~~~~--------------- 65 (278)
||||||.||.|||++|++|+|+||+|.++ |.++++|+|||||+|++|+|||+|||++.|+++|
T Consensus 131 LIesGt~Gf~GQv~~ii~GkTECyeC~pK--~~~kTypvCTIRstPS~~iHCIVWAK~~lF~qlF~~d~~~q~~~~d~~d 208 (603)
T KOG2013|consen 131 LIESGTGGFLGQVQVIIKGKTECYECIPK--PVPKTYPVCTIRSTPSEPIHCIVWAKHYLFNQLFGEDDDDQYGRHDNAD 208 (603)
T ss_pred ceecCcccccceEEEEecCCcceecccCC--CCCCcCCceEeecCCCCceeeeeehHhHHHHHHhccccccccccccccC
Confidence 79999999999999999999999999986 7788999999999999999999999975444443
Q ss_pred --------------------------------------------------------------------------------
Q 023706 66 -------------------------------------------------------------------------------- 65 (278)
Q Consensus 66 -------------------------------------------------------------------------------- 65 (278)
T Consensus 209 ~d~~e~~t~~~~~~~~et~d~~Er~~~i~~~~~~~~~~~~~i~~klF~~dI~yl~~~e~~wk~r~~p~pl~~~~~i~~~~ 288 (603)
T KOG2013|consen 209 PDNCEDMTEEEAEAFRETEDLKERRESIVEIDKNLDFGPFKIFNKLFIYDIEYLLGMEALWKPRSRPVPLSIAEVISTSL 288 (603)
T ss_pred chhhhccChhhhhhhccchHHHHHHHHHHHHhhccCCChhhhhhHHHHHHHHHHHhhhhhccCCCCCCCcchhhccCCcc
Confidence
Q ss_pred ---------------------------------------------C--CCccCCCChHHHHHHHHHHHHHHHHhCCCCcc
Q 023706 66 ---------------------------------------------S--GKSFDPDDPEHMQWVYSEAVKRAELFGIPGVT 98 (278)
Q Consensus 66 ---------------------------------------------~--~~~FdkDd~~hi~fI~aaanlRA~~y~I~~~~ 98 (278)
. .+.|||||...|+||++|||+||+.|||+..+
T Consensus 289 ~t~ns~~q~~~~a~~~~~~v~~v~~~~~vf~~~i~~l~~~~~~~~~h~~l~fdKdd~~~~~FVaaaaNiRa~if~ipmkS 368 (603)
T KOG2013|consen 289 ETINSIVQSITSAQLNDQNVWTVDEGAVVFRLSIQALDLRCPKESDHWYLIFDKDDASTMEFVAAAANIRAHIFGIPMKS 368 (603)
T ss_pred ccccchhhhccccccCCcceeeeccccHHHHHHHHHhcccCCccCCCceEEEcCCcHHHHHHHHHHhhhhhhhhccchhh
Confidence 1 14699999999999999999999999999999
Q ss_pred chhhhhhhccccccccchhhhHHHHHHHHHHHHHhcCCCCCcceEEEecCCCce----eeeeecccCCCCccCCC-cEEE
Q 023706 99 YSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLH----IKVTEFVKDKDCLVCGP-GVLI 173 (278)
Q Consensus 99 ~~~~k~iag~IIPAIaTT~AiVagl~~~E~~K~l~g~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~C~vC~~-~~~i 173 (278)
.|++|+||||||||||||||+|||+.++|++|+|.|.-...+..+. ....... ..-...+|||+|+||+. ...+
T Consensus 369 ~Fdik~mAgnIipaIAtTNAiIagliv~eaiKvl~~~~~~~~~~f~-~~~~n~r~r~l~~~~~~~PNp~C~vCs~~~~~l 447 (603)
T KOG2013|consen 369 LFDIKQMAGNIIPAIATTNAIIAGLIVTEAIKVLGGDFDDCNMIFL-AKRPNPRKRVLLPWALRPPNPNCPVCSEVPLVL 447 (603)
T ss_pred hhchHhHhcccchhhhhhhhHHHHHHHHHHHHHhccchhcceeeEE-ccCCCccceeecccccCCCCCCCccccccceEE
Confidence 9999999999999999999999999999999999875332233222 2211111 11112479999999998 7777
Q ss_pred EeCC-CCCHHHHHHHHHcCccCcceeeEEEeC-CcEEEeeCCCchhhhhccccCCcHHHh-hcccccceeeecccccccc
Q 023706 174 ELDT-SVTLEKFINLLEEHPKLQLAKASVTYR-GKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDILHVTGVTGQSD 250 (278)
Q Consensus 174 ~i~~-~~TL~~li~~l~~~~~~~l~~~~i~~g-~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~~~~~~~~~~~~v~d 250 (278)
+++. .+|+.+|++.+-+. ++++ .|.++.- ..++|.. +++ .++.|+|+|| +.+|| .+ .+.|
T Consensus 448 ~ln~~~~~~~~L~D~ivk~-r~~~-~pdvsll~~~Li~~~---d~e----~n~~k~lsel~i~ngs--li------~~~~ 510 (603)
T KOG2013|consen 448 ELNTRKSTLRDLVDKIVKT-RLGY-LPDVSLLDDDLIDDM---DFE----DNLDKTLSELGILNGS--LI------NVKD 510 (603)
T ss_pred EeccccchHHHHHHHHHHH-Hhcc-Ccccchhhhhhcccc---cch----hhhhhhHHhhCCCCCc--eE------eeec
Confidence 7774 58999999988776 4566 4444432 3444432 344 4999999999 99995 55 5666
Q ss_pred CCcceEEEEEEEEecCCCc
Q 023706 251 KKTSCLRKLRVVFRGVDGV 269 (278)
Q Consensus 251 ~~~~~~~~l~~~~~~~~~~ 269 (278)
....- -+.++|.+..+.
T Consensus 511 e~~d~--~~~~~~~~~~~~ 527 (603)
T KOG2013|consen 511 EILDP--VLEVHFTESRNT 527 (603)
T ss_pred ccCCc--ceeeeecccccc
Confidence 43332 234788655443
No 3
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=4.6e-51 Score=424.16 Aligned_cols=158 Identities=26% Similarity=0.309 Sum_probs=133.6
Q ss_pred CccCCCChH--HHHHHHHHHHHHHHHhCCCCccchhhhhhhccccccccchhhhHHHHHHHHHHHHHhcCC--CCCcc-e
Q 023706 68 KSFDPDDPE--HMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCS--KTLSN-Y 142 (278)
Q Consensus 68 ~~FdkDd~~--hi~fI~aaanlRA~~y~I~~~~~~~~k~iag~IIPAIaTT~AiVagl~~~E~~K~l~g~~--~~~~~-~ 142 (278)
++|||||+. |||||+|||||||++|+|++.+|+++|+||||||||||||||+||||+++|+||++.|.. +..+| |
T Consensus 804 ~~FeKDDd~n~HidFI~AasNLRA~nY~I~~~d~~~~K~iAG~IIPAiATTTA~vaGLv~lEl~Kv~~~~~~i~~~kn~f 883 (1008)
T TIGR01408 804 LSFEKDDDHNGHIDFITAASNLRAKNYSIEPADRFKTKFIAGKIIPAIATSTATVSGLVCLELIKVTDGGYKFEVYKNCF 883 (1008)
T ss_pred eeeccCCCcchHHHHHHHHHhhHHHhcCCCcccHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHhccccHHHHhHHH
Confidence 569999987 999999999999999999999999999999999999999999999999999999999863 12233 3
Q ss_pred EEEecCCCceeeeeecccCCCCccC-----C-C-cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCc
Q 023706 143 LTYNGVAGLHIKVTEFVKDKDCLVC-----G-P-GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPV 215 (278)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~p~C~vC-----~-~-~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~ 215 (278)
+. .++++..+. +|.|-|..| . + |+||+++.++||++|+++++++| ++++.||+.|.++||..+.++
T Consensus 884 ~n----lalp~~~~s-eP~~~~~~~~~~~~~~t~WDr~~i~~~~Tl~~~i~~~~~~~--~~~v~~is~g~~~lY~~~~~~ 956 (1008)
T TIGR01408 884 LN----LAIPLFVFT-EPTEVRKTKIRNGISFTIWDRWTLHGDFTLLEFINAVKEKY--GLEPTMVSQGVKLLYVPVMPG 956 (1008)
T ss_pred Hh----hcccccccc-CCCCCCceeecCceeccceEEEEecCCCcHHHHHHHHHHHh--CCeeEEEEcCceEEEeccchh
Confidence 33 345555554 355556666 2 4 99999988999999999999998 899999999999999987544
Q ss_pred hhhhhccccCCcHHHhhcccc
Q 023706 216 LEEMTRSNLSLPLYDLMDKVA 236 (278)
Q Consensus 216 ~~~~~~~~l~~~l~~lv~~~~ 236 (278)
++| ||+++|+||++..+
T Consensus 957 ~~e----rl~~~l~el~~~~~ 973 (1008)
T TIGR01408 957 HAE----RLKLKMHKLVKPTT 973 (1008)
T ss_pred hHH----hcCCCHHHHHHHhc
Confidence 443 89999999988875
No 4
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=100.00 E-value=9.4e-51 Score=388.70 Aligned_cols=205 Identities=26% Similarity=0.407 Sum_probs=170.5
Q ss_pred CEEeeecCcceEEEEEcCCCCCcccccCCCCCCCCCCCcccccCCCCCcchhhhhhhhh---------------------
Q 023706 1 MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLI--------------------- 59 (278)
Q Consensus 1 LIe~Gt~G~~G~v~vi~p~~t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~HcI~wa~~~--------------------- 59 (278)
||+|||.|++||+++++|+.|+||+|..+ |+++++|+||||+||++++|||+|||++
T Consensus 126 li~~gt~G~~G~v~v~iP~~te~y~~~~~--p~~~~~P~Ctl~~~P~~~eHcI~wA~~~F~~lF~~~~~~~~~~~~~~c~ 203 (435)
T cd01490 126 LLESGTLGTKGNTQVVIPHLTESYSSSRD--PPEKSIPLCTLKNFPNAIEHTIQWARDEFEGLFKQPPENVNQYLFEDCV 203 (435)
T ss_pred EEEEecccceeEEEEEeCCCCCCccCCCC--CCCCCCCCccccCCCCCchHHHHHHHHHHHHHhccchHHHHHhhHHHHH
Confidence 69999999999999999999999999964 7788999999999999999999999996
Q ss_pred hhcc-----cC----------------------------------------------------------CCCccCCCChH
Q 023706 60 KWDE-----VH----------------------------------------------------------SGKSFDPDDPE 76 (278)
Q Consensus 60 ~~~~-----~~----------------------------------------------------------~~~~FdkDd~~ 76 (278)
.|++ .| +-..|||||+.
T Consensus 204 ~~a~~~f~~~F~~~I~~ll~~~p~d~~~~~g~~fw~~~kr~P~p~~fd~~~~~h~~fv~~~a~l~a~~~~~~~FeKDdd~ 283 (435)
T cd01490 204 RWARLLFEKYFNNNIKQLLHNFPPDAVTSDGAPFWSGPKRCPTPLEFDVNNPLHLDFVLAAANLYAEVYGIPGFEKDDDT 283 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccccccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCch
Confidence 4432 11 11239999976
Q ss_pred --HHHHHHHHHHHHHHHhCCCCccchhhhhhhccccccccchhhhHHHHHHHHHHHHHhcCCC--CCcc-eEEEecCCCc
Q 023706 77 --HMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSK--TLSN-YLTYNGVAGL 151 (278)
Q Consensus 77 --hi~fI~aaanlRA~~y~I~~~~~~~~k~iag~IIPAIaTT~AiVagl~~~E~~K~l~g~~~--~~~~-~~~~~~~~~~ 151 (278)
||+||+|+|||||++|+|++.+++++|+||||||||||||||+||||+++|++|++.|..+ ..+| |+.. .+
T Consensus 284 n~h~~fi~a~snlRa~~y~I~~~~~~~~k~iag~IIPAiaTT~aivagl~~~e~~K~~~~~~~~~~~~n~~~nl----a~ 359 (435)
T cd01490 284 NFHMDFITAASNLRARNYSIPPADRHKTKRIAGKIIPAIATTTAAVTGLVCLELYKVVDGKRPLEAYKNAFLNL----AL 359 (435)
T ss_pred hHHHHHHHHhhhhHHHHcCCCccCHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHhCCccHHHcchHhhhc----cC
Confidence 9999999999999999999999999999999999999999999999999999999998642 1233 3332 23
Q ss_pred eeeeeecccCCCCccC--C---C-cEEEEeCCCCCHHHHH-HHHHcCccCcceeeEEEeCCcEEEeeCC
Q 023706 152 HIKVTEFVKDKDCLVC--G---P-GVLIELDTSVTLEKFI-NLLEEHPKLQLAKASVTYRGKNLYMQAP 213 (278)
Q Consensus 152 ~~~~~~~~~~p~C~vC--~---~-~~~i~i~~~~TL~~li-~~l~~~~~~~l~~~~i~~g~~~lY~~~~ 213 (278)
+...+..+..|.+..| + + |++|+++.++|+++|+ ++++++| ++++.||+.|+++||..+.
T Consensus 360 p~~~~~~p~~~~~~~~~~~~~~t~Wdr~~v~~~~t~~~~~~~~~~~~~--~~~v~~i~~g~~~ly~~~~ 426 (435)
T cd01490 360 PFFAFSEPIPAPKVKYAYDEEWTIWDRFEVKGKQTLQELLIDYFKEKY--GLEVTMLSQGVSMLYSSFM 426 (435)
T ss_pred CccccccCCCCCccccCCCCEEeeEeEEEEcCCCcHHHHHHHHHHHHh--CCeEEEEEeCCeEEEeecC
Confidence 3333333222223344 1 3 9999999999999999 9999998 8999999999999998763
No 5
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=1.2e-49 Score=364.72 Aligned_cols=168 Identities=62% Similarity=1.112 Sum_probs=163.9
Q ss_pred CEEeeecCcceEEEEEcCCCCCcccccCCCCCCCCCCCcccccCCCCCcchhhhhhhhhhhcccCCCCccCCCChHHHHH
Q 023706 1 MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQW 80 (278)
Q Consensus 1 LIe~Gt~G~~G~v~vi~p~~t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~HcI~wa~~~~~~~~~~~~~FdkDd~~hi~f 80 (278)
||+||+.|++||+++++|+.|+||+|.++..|+++++|+||||++|++|+|||+||+.+.|+++++..+||+||++|++|
T Consensus 124 lI~~gt~G~~G~v~vi~P~~t~C~~C~~d~~p~~~~~p~Cti~~~P~~~~hci~~a~~~~~~~~~~~~~~~~d~~~~~~~ 203 (291)
T cd01488 124 LIDGGTEGFKGHARVILPGITACIECSLDLFPPQVTFPLCTIANTPRLPEHCIEYASLIQWPKEFPFVPLDGDDPEHIEW 203 (291)
T ss_pred EEEEEEcccEEEEEEEcCCCCCccccCCCCCCCCCCCCcccccCCCCCcchheeeeeeeecccccCCCcCCCCCHHHHHH
Confidence 68999999999999999999999999998778889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCccchhhhhhhccccccccchhhhHHHHHHHHHHHHHhcCCCCCcceEEEecCCCceeeeeeccc
Q 023706 81 VYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVK 160 (278)
Q Consensus 81 I~aaanlRA~~y~I~~~~~~~~k~iag~IIPAIaTT~AiVagl~~~E~~K~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (278)
|+++|+.||++|||++.+++.++++++||||||+||||||||++++|++|+++++.+.++||++|+|..+++...++++|
T Consensus 204 i~~~a~~ra~~f~i~~~~~~~~~~v~~~iiPai~stnaiia~~~~~~~~k~~~~~~~~~~n~~~~~g~~g~~~~~~~~~~ 283 (291)
T cd01488 204 LYQKALERAAQFNISGVTYSLTQGVVKRIIPAVASTNAIIAAACCLEALKIATDCYENLNNYLMYNGVDGCYTYTFEHER 283 (291)
T ss_pred HHHHHHHHHHHcCCCcccHHHHhhhHheeeCccCchHHHHHHHHHHHHHHHHhccccCCCceEEEecCCceEEEEEEEee
Confidence 99999999999999999999999999999999999999999999999999999988888999999999999999999999
Q ss_pred CCCCccCC
Q 023706 161 DKDCLVCG 168 (278)
Q Consensus 161 ~p~C~vC~ 168 (278)
+|+|++|+
T Consensus 284 ~~~c~~c~ 291 (291)
T cd01488 284 KEDCPVCS 291 (291)
T ss_pred CCCCCCCC
Confidence 99999996
No 6
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-49 Score=390.39 Aligned_cols=223 Identities=28% Similarity=0.413 Sum_probs=184.0
Q ss_pred CEEeeecCcceEEEEEcCCCCCcccccCCCCCCCCCCCcccccCCCCCcchhhhhhhhh---------------------
Q 023706 1 MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLI--------------------- 59 (278)
Q Consensus 1 LIe~Gt~G~~G~v~vi~p~~t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~HcI~wa~~~--------------------- 59 (278)
|+|+||.|++|++|||+|+.|+.|..+. +||++++|+||+||||+.++|||+|||+.
T Consensus 557 LLESGTlGTKGntQVvvPhlTEsY~SS~--DPPEksiP~CTlknFPn~IeHTiqWAR~eFEg~F~~~~e~vN~yls~p~f 634 (1013)
T KOG2012|consen 557 LLESGTLGTKGNTQVVVPHLTESYGSSR--DPPEKSIPVCTLKSFPNAIEHTIQWARDEFEGLFKQSAENVNKYLSDPVF 634 (1013)
T ss_pred hhhccCcCCccceeEEeccccccccccC--CCcccCCceeeeccCchHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCchH
Confidence 7899999999999999999999998886 49999999999999999999999999992
Q ss_pred -----------------------------------hhcccC---------------------------------------
Q 023706 60 -----------------------------------KWDEVH--------------------------------------- 65 (278)
Q Consensus 60 -----------------------------------~~~~~~--------------------------------------- 65 (278)
.|+++.
T Consensus 635 ~e~sl~~~~~~~~~~~l~~v~~~l~~rp~~~~dCv~warl~f~~~f~~~ikqLl~~FP~d~~t~~G~pFWs~pKr~P~pl 714 (1013)
T KOG2012|consen 635 YETSLKLIGEPQSLETLERVVDCLSERPQNWQDCVEWARLHFEKYFHNRIKQLLHNFPPDAKTSDGAPFWSGPKRCPRPL 714 (1013)
T ss_pred HHHHHhhccCcchhHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHhhHHHHHhhcCCCcccccCCCCcCCCCCCCCCCce
Confidence 232221
Q ss_pred --------------------------------------------------------------------------------
Q 023706 66 -------------------------------------------------------------------------------- 65 (278)
Q Consensus 66 -------------------------------------------------------------------------------- 65 (278)
T Consensus 715 ~Fd~n~~~hl~fv~Aaa~l~a~~~gi~~~~d~~~~~~~~~~v~~p~f~P~~~~~i~~~~~~~~~~~~s~d~~~~i~~l~~ 794 (1013)
T KOG2012|consen 715 EFDVNDPLHLNFVQAAANLRAEVYGIPGSQDREALAELLERVIVPEFEPKQKVKIVVEEAELAASSASVDDSAAIDQLNK 794 (1013)
T ss_pred eecCCCchhHHHHHHHHHHHHHhcCCCcccCHHHhhhhHhhcCCCccccccCCeecccccccccccccCCchHHHHHHhh
Confidence
Q ss_pred -------------CCCccCCCChH--HHHHHHHHHHHHHHHhCCCCccchhhhhhhccccccccchhhhHHHHHHHHHHH
Q 023706 66 -------------SGKSFDPDDPE--HMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLK 130 (278)
Q Consensus 66 -------------~~~~FdkDd~~--hi~fI~aaanlRA~~y~I~~~~~~~~k~iag~IIPAIaTT~AiVagl~~~E~~K 130 (278)
.|+.|+|||+. |||||++|||+||+||+|++.+|+.+|+|||+||||||||||+|+||+++|+||
T Consensus 795 ~l~~~~~~~~~~~~p~~FEKDDDsN~H~dfi~aasnlRA~nY~I~~adr~k~K~IaGkIIPAIATtTa~v~Glv~LElyK 874 (1013)
T KOG2012|consen 795 ALPSPSVLPSFKMKPLDFEKDDDSNFHMDFITAASNLRAQNYSIPPADRLKTKRIAGKIIPAIATTTAAVSGLVCLELYK 874 (1013)
T ss_pred cccccccCCCCceeeeeeccccccccchHHHHHHhhhhhhccCCCccchhhhheeeeeEEEEEeehhHHHHHHHHhhhhh
Confidence 25679999976 999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCC---CCcceEEEecCCCceeeeeecccCCCCcc------CCC-cEEEEeCCCCCHHHHHHHHHcCccCcceeeE
Q 023706 131 IASGCSK---TLSNYLTYNGVAGLHIKVTEFVKDKDCLV------CGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKAS 200 (278)
Q Consensus 131 ~l~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~C~v------C~~-~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~ 200 (278)
++.|..+ +.+.|+. ..+++..+.. |-+.|.. -.+ |+||++..+.||++|++++++++ ++++.|
T Consensus 875 v~~G~~~~e~~Kn~fln----LAlp~f~~~e-p~~~pk~~~~~~~~~tlWdR~~v~g~~tL~~~L~~~~~~~--gl~i~m 947 (1013)
T KOG2012|consen 875 VVDGKRPVEAYKNTFLN----LALPFFSFAE-PLAAPKVQYHNDLSWTLWDRWEVKGEPTLREFLDHLEEQH--GLEITM 947 (1013)
T ss_pred hccCCCchHHhhhhhhc----ccccceeecc-cCCCcceeeecccceeeeEEEEecCCCCHHHHHHHHhhhc--CceEEE
Confidence 9999543 1122332 2222222221 2221111 113 99999999999999999999987 899999
Q ss_pred EEeCCcEEEeeCCCchhhhhccccCCcHHHhhcccc
Q 023706 201 VTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVA 236 (278)
Q Consensus 201 i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~lv~~~~ 236 (278)
|++|.++||..+++++.| ||++++.+|++..+
T Consensus 948 ls~G~~lly~~~~~k~~e----rl~~~v~elv~~~~ 979 (1013)
T KOG2012|consen 948 LSQGVSLLYASFMPKHAE----RLPLRVTELVRDVT 979 (1013)
T ss_pred EeccceeehhhhhhHHHH----hcCCcHHHHHHHHh
Confidence 999999999877655544 99999999988663
No 7
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=5.6e-45 Score=336.99 Aligned_cols=165 Identities=35% Similarity=0.621 Sum_probs=139.9
Q ss_pred CEEeeecCcceEEEEEcCCCCCcccccCCCCCCCCCCCcccccCCCCCcchhhhhhhhh--------------------h
Q 023706 1 MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLI--------------------K 60 (278)
Q Consensus 1 LIe~Gt~G~~G~v~vi~p~~t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~HcI~wa~~~--------------------~ 60 (278)
||++|+.|++||+++++|+.|+||+|..+ ++++++|+|||+++|+.++|||+|||++ .
T Consensus 118 ~I~~gt~G~~G~v~vi~p~~t~c~~c~~~--~~~~~~pictI~~~p~~~~hci~~a~~~f~~~~~~f~~~i~~l~~~~~~ 195 (312)
T cd01489 118 LIESGTTGFLGQVQVIKKGKTECYECQPK--ETPKTFPVCTIRSTPSQPIHCIVWAKSLFFLFNKVFKDDIERLLSMEEL 195 (312)
T ss_pred EEEEecCcceeEEEEEcCCCCCccCCCCC--CCCCcCCcceecCCCCCCEeehhHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 68999999999999999999999999976 5668999999999999999999999998 7
Q ss_pred hcccCCC-------CccCCCChHHHHHHHHHHHHHHHHhCCCCccchhhhhhhccccccccchhhhHHHHHHHHHHHHHh
Q 023706 61 WDEVHSG-------KSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIAS 133 (278)
Q Consensus 61 ~~~~~~~-------~~FdkDd~~hi~fI~aaanlRA~~y~I~~~~~~~~k~iag~IIPAIaTT~AiVagl~~~E~~K~l~ 133 (278)
|.....| ++|||||++||+||+++||+||++|||+..+++++|+||||||||||||||||||++++|++|+++
T Consensus 196 w~~~~~p~p~~~~~~~fdkDd~~~~~~v~~~a~lRa~~f~I~~~~~~~~k~i~g~IiPaiatTnaivag~~~~e~~k~~~ 275 (312)
T cd01489 196 WKTRKPPVPLSWKELTFDKDDQDALDFVAAAANLRSHVFGIPMKSRFDIKQMAGNIIPAIATTNAIIAGLIVLEALKVLS 275 (312)
T ss_pred hcCCCCCCCCCCCCcCcCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 8765533 679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcc-eEEE--ecCCCceeeeeecccCCCCccC
Q 023706 134 GCSKTLSN-YLTY--NGVAGLHIKVTEFVKDKDCLVC 167 (278)
Q Consensus 134 g~~~~~~~-~~~~--~~~~~~~~~~~~~~~~p~C~vC 167 (278)
+..+..++ |+.. .+........-..+|||+|.+|
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~c~~c 312 (312)
T cd01489 276 GDKEQCRTVFLNLQPNRRKRLLVPCKLDPPNPNCYVC 312 (312)
T ss_pred hhHHHhhhHhhhcccCCCCcEecCCCCCCcCCCCCCC
Confidence 87544444 3221 1111111111223689999998
No 8
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=100.00 E-value=2.2e-40 Score=295.69 Aligned_cols=116 Identities=53% Similarity=1.123 Sum_probs=111.9
Q ss_pred CEEeeecCcceEEEEEcCCCCCcccccCCCCCCCCCCCcccccCCCCCcchhhhhhhhhhhcccCCCCccCCCChHHHHH
Q 023706 1 MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQW 80 (278)
Q Consensus 1 LIe~Gt~G~~G~v~vi~p~~t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~HcI~wa~~~~~~~~~~~~~FdkDd~~hi~f 80 (278)
||++|+.|++||+++++|+.|+||+|.+. |+++++|+|||+++|++|+|||+||+++.| ||+.||+|
T Consensus 119 lI~~g~~G~~G~v~vi~p~~t~c~~C~~~--~~~~~~p~Cti~~~P~~~~hci~~a~~~~~-----------d~~~~~~~ 185 (234)
T cd01484 119 LIESGTEGFKGNAQVILPGMTECIECTLY--PPQKNFPMCTIASMPRLPEHCIEWARMLQW-----------DDPEHIQF 185 (234)
T ss_pred EEEEcccCCceEEEEEcCCCCCCcccCCC--CCCCCCCccccCCCCCCchHHHHHHHHHHh-----------CCHHHHHH
Confidence 68999999999999999999999999984 777899999999999999999999999988 89999999
Q ss_pred HHHHHHHHHHHhCCCCccchhhhhhhccccccccchhhhHHHHHHHHHH
Q 023706 81 VYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETL 129 (278)
Q Consensus 81 I~aaanlRA~~y~I~~~~~~~~k~iag~IIPAIaTT~AiVagl~~~E~~ 129 (278)
|+++||+||++|||++++++++++|||||||||+||||+|||++++|++
T Consensus 186 i~~~a~~ra~~~~i~~~~~~~~~~i~~~iipai~tTnaiia~~~~~e~~ 234 (234)
T cd01484 186 IFQASNERASQYNIRGVTYFLTKGVAGRIIPAVATTNAVVAGVCALEVF 234 (234)
T ss_pred HHHHHHHHHHHcCCCCcCHHHHHHHhcCeecchhhHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999974
No 9
>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....
Probab=99.89 E-value=1.7e-23 Score=152.14 Aligned_cols=67 Identities=40% Similarity=0.680 Sum_probs=56.4
Q ss_pred ccCCCChHHHHHHHHHHHHHHHHhCCCCccchhhhhhhccccccccchhhhHHHHHHHHHHHHHhcC
Q 023706 69 SFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGC 135 (278)
Q Consensus 69 ~FdkDd~~hi~fI~aaanlRA~~y~I~~~~~~~~k~iag~IIPAIaTT~AiVagl~~~E~~K~l~g~ 135 (278)
+||+||++|++||+++|||||++|||+..+++.+++++|+|||+++||+|+|||++++|++|+++|+
T Consensus 1 ~Fd~dd~~h~~fI~a~anLrA~~f~I~~~~~~~~~~i~~~iIP~~~~t~~iva~~~~~e~~k~~~~~ 67 (67)
T PF02134_consen 1 EFDKDDPLHLDFIYAAANLRAQNFGIPPLDREEIKKIAGNIIPAFAPTNAIVAGIAVNELYKLLQNC 67 (67)
T ss_dssp ---TTSHHHHHHHHHHHHHHHHHTT---S-HHHHHHHHTTEE-B-HHHHHHHHHHHHHHHHHHHTT-
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHhcCcCCCcCCchhHHHHHHHHHHHHHHhcC
Confidence 5999999999999999999999999999999999999999999999999999999999999999874
No 10
>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2) []. This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP []. Not all proteins in this entry contain a functional active site.; PDB: 3CMM_A 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B 2PX9_A 1Z7L_A 3GZN_D 3DBL_F 1R4N_H ....
Probab=99.66 E-value=5.2e-18 Score=113.56 Aligned_cols=44 Identities=43% Similarity=0.962 Sum_probs=35.7
Q ss_pred CCCCcccccCCCCCCCCCCCcccccCCCCCcchhhhhhhhhhhcccC
Q 023706 19 GVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH 65 (278)
Q Consensus 19 ~~t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~HcI~wa~~~~~~~~~ 65 (278)
++|+||+|..+ ++++++|+|||||+|++|+|||+||| .+|+++|
T Consensus 1 ~~Tecy~c~~~--~~~~~~P~CTir~~P~~~~HcI~wAk-~~f~~~F 44 (45)
T PF10585_consen 1 HVTECYECSPD--PPEKSYPVCTIRNFPRTPEHCIEWAK-DLFEELF 44 (45)
T ss_dssp TTS--TTCSGG--GSSSSEEHHHHHTS-SSHHHHHHHHH-HHHHHHH
T ss_pred CccccccCCCC--CCCCCCCcchhhcCCCCchHHHHHHH-HHHHHHh
Confidence 57999999986 66678999999999999999999999 6677654
No 11
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=99.66 E-value=1.4e-16 Score=120.51 Aligned_cols=84 Identities=42% Similarity=0.587 Sum_probs=77.2
Q ss_pred EEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHhhcccccceeeeccccccccCC
Q 023706 173 IELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVAKDILHVTGVTGQSDKK 252 (278)
Q Consensus 173 i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~lv~~~~~~~~~~~~~~~v~d~~ 252 (278)
+++++++||++||+.+.+++++++..|+|+.+++.||+.+|+.+++++|.||.|+|.||+.+| +++ .|+|..
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL~~~g--~ei------~VtD~~ 72 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKELLSDG--EEI------TVTDPT 72 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTTHHSS--EEE------EEEETT
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHHhcCC--CEE------EEECCC
Confidence 567889999999999999988899999999999999999999999999999999999999999 899 999999
Q ss_pred cceEEEEEEEEe
Q 023706 253 TSCLRKLRVVFR 264 (278)
Q Consensus 253 ~~~~~~l~~~~~ 264 (278)
.++.++++|+|+
T Consensus 73 lp~~~~~rl~f~ 84 (84)
T PF08825_consen 73 LPISLRLRLKFK 84 (84)
T ss_dssp ESSEEEEEEEEE
T ss_pred CceeEEEEEEeC
Confidence 999999999995
No 12
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.42 E-value=7.8e-13 Score=126.02 Aligned_cols=101 Identities=27% Similarity=0.524 Sum_probs=80.3
Q ss_pred CEEeeecCcceEEEEEcCCC----CCcccccCCCCCCCCCCCcccccCCCCCcchhhhhhhhhhhcccCCCCccCCCChH
Q 023706 1 MVDGGTEGFKGHARVIIPGV----TPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPE 76 (278)
Q Consensus 1 LIe~Gt~G~~G~v~vi~p~~----t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~HcI~wa~~~~~~~~~~~~~FdkDd~~ 76 (278)
+|.+|+.|+.||+.++.|+. ++||+|.++..|+....|.|.
T Consensus 253 ~i~~~~~g~~g~v~~~~p~~~~~~~~c~~c~~~~~~~~~~~~~~~----------------------------------- 297 (376)
T PRK08762 253 LVYGAVFRFEGQVSVFDAGRQRGQAPCYRCLFPEPPPPELAPSCA----------------------------------- 297 (376)
T ss_pred EEEEEeccCEEEEEEEeCCCCCCCCCCHhhcCCCCCCcccCCCCc-----------------------------------
Confidence 58999999999999999976 899999986434333345563
Q ss_pred HHHHHHHHHHHHHHHhCCCCccchhhhhhhccccccccchhhhHHHHHHHHHHHHHhcCCCCCcc-eEEEecCCCceeee
Q 023706 77 HMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSN-YLTYNGVAGLHIKV 155 (278)
Q Consensus 77 hi~fI~aaanlRA~~y~I~~~~~~~~k~iag~IIPAIaTT~AiVagl~~~E~~K~l~g~~~~~~~-~~~~~~~~~~~~~~ 155 (278)
..+.++++++++|++|++|++|+|+|.++.+.+ ++.++... ..+..
T Consensus 298 --------------------------------~~gv~g~~~~~~~~~~a~e~~k~l~g~~~~~~~~~~~~d~~~-~~~~~ 344 (376)
T PRK08762 298 --------------------------------EAGVLGVLPGVIGLLQATEAIKLLLGIGDPLTGRLLTFDALA-MRFRE 344 (376)
T ss_pred --------------------------------cCCcchhhHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCC-CeEEE
Confidence 123678899999999999999999998776655 55666554 45788
Q ss_pred eecccCCCCccCCC
Q 023706 156 TEFVKDKDCLVCGP 169 (278)
Q Consensus 156 ~~~~~~p~C~vC~~ 169 (278)
+++.++|+|++|+.
T Consensus 345 ~~~~~~~~C~~C~~ 358 (376)
T PRK08762 345 LRLPPDPHCPVCAP 358 (376)
T ss_pred EeccCCCCCCCCCC
Confidence 88899999999985
No 13
>PRK07411 hypothetical protein; Validated
Probab=99.38 E-value=2.2e-12 Score=123.55 Aligned_cols=101 Identities=26% Similarity=0.277 Sum_probs=80.6
Q ss_pred CEEeeecCcceEEEEEcCCCCCcccccCCCCCCCCCCCcccccCCCCCcchhhhhhhhhhhcccCCCCccCCCChHHHHH
Q 023706 1 MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQW 80 (278)
Q Consensus 1 LIe~Gt~G~~G~v~vi~p~~t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~HcI~wa~~~~~~~~~~~~~FdkDd~~hi~f 80 (278)
+|.|++.|+.||+.++.|+.++||+|.++..|++...|.|.
T Consensus 156 ~v~~~~~g~~g~~~v~~~~~~~c~~c~~~~~~~~~~~~~c~--------------------------------------- 196 (390)
T PRK07411 156 NVYGSIFRFEGQATVFNYEGGPNYRDLYPEPPPPGMVPSCA--------------------------------------- 196 (390)
T ss_pred EEEEEEccCEEEEEEECCCCCCChHHhcCCCCCcccCCCCc---------------------------------------
Confidence 58999999999999998888999999997544444556663
Q ss_pred HHHHHHHHHHHhCCCCccchhhhhhhccccccccchhhhHHHHHHHHHHHHHhcCCCCCcc-eEEEecCCCceeeeeecc
Q 023706 81 VYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSN-YLTYNGVAGLHIKVTEFV 159 (278)
Q Consensus 81 I~aaanlRA~~y~I~~~~~~~~k~iag~IIPAIaTT~AiVagl~~~E~~K~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~ 159 (278)
..+.+++++++||++|++|++|+|+|.++.+.+ .+++++.. ..+..+++.
T Consensus 197 ----------------------------~~gvlg~~~~~~g~~~a~eaik~l~g~~~~l~~~l~~~d~~~-~~~~~~~~~ 247 (390)
T PRK07411 197 ----------------------------EGGVLGILPGIIGVIQATETIKIILGAGNTLSGRLLLYNALD-MKFRELKLR 247 (390)
T ss_pred ----------------------------cCCcCcchHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEECCC-CceeEEecc
Confidence 123678899999999999999999998776665 55666544 566888888
Q ss_pred cCCCCccCCC
Q 023706 160 KDKDCLVCGP 169 (278)
Q Consensus 160 ~~p~C~vC~~ 169 (278)
++|+|++|..
T Consensus 248 ~~~~c~~i~~ 257 (390)
T PRK07411 248 PNPERPVIEK 257 (390)
T ss_pred CCCCCCcccc
Confidence 9999998753
No 14
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=99.37 E-value=2.6e-12 Score=120.93 Aligned_cols=100 Identities=26% Similarity=0.348 Sum_probs=75.5
Q ss_pred CEEeeecCcceEEEEEcCCCCCcccccCCCCCCCCCCCcccccCCCCCcchhhhhhhhhhhcccCCCCccCCCChHHHHH
Q 023706 1 MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQW 80 (278)
Q Consensus 1 LIe~Gt~G~~G~v~vi~p~~t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~HcI~wa~~~~~~~~~~~~~FdkDd~~hi~f 80 (278)
+|.+|+.|+.|++.++.|+.|+||+|.++..|.. -+.|.
T Consensus 144 ~i~~~~~g~~G~~~~~~P~~tpC~~Cl~~~~p~~--~~~c~--------------------------------------- 182 (338)
T PRK12475 144 WIYGGCVGSYGVTYTIIPGKTPCLRCLMEHVPVG--GATCD--------------------------------------- 182 (338)
T ss_pred EEEEEecccEEEEEEECCCCCCCHHHhcCCCCCC--CCCCc---------------------------------------
Confidence 5889999999999999999999999998643321 12331
Q ss_pred HHHHHHHHHHHhCCCCccchhhhhhhccccccccchhhhHHHHHHHHHHHHHhcCCCCCcceEEEecCCCceeeeeecc-
Q 023706 81 VYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFV- 159 (278)
Q Consensus 81 I~aaanlRA~~y~I~~~~~~~~k~iag~IIPAIaTT~AiVagl~~~E~~K~l~g~~~~~~~~~~~~~~~~~~~~~~~~~- 159 (278)
..++++++++++|++++.|++|+|+|..+.+.+.++..+.+...+..+.+.
T Consensus 183 ----------------------------~~Gvl~p~v~~iaslqa~EalK~L~g~~~~l~~~Ll~~D~~~~~~~~~~~~~ 234 (338)
T PRK12475 183 ----------------------------TAGIIQPAVQIVVAYQVTEALKILVEDFEALRETFLSFDIWNNQNMSIKVNK 234 (338)
T ss_pred ----------------------------cCCcCchHHHHHHHHHHHHHHHHHhCCCCCCcCeEEEEECCCCeEEEEEecc
Confidence 123566777899999999999999998777766554333444566777774
Q ss_pred -cCCCCccCCC
Q 023706 160 -KDKDCLVCGP 169 (278)
Q Consensus 160 -~~p~C~vC~~ 169 (278)
++|+|++|+.
T Consensus 235 ~k~p~Cp~Cg~ 245 (338)
T PRK12475 235 QKKDTCPSCGL 245 (338)
T ss_pred CCCCCCCcCCC
Confidence 4999999985
No 15
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=99.35 E-value=1.2e-12 Score=99.22 Aligned_cols=58 Identities=29% Similarity=0.499 Sum_probs=37.9
Q ss_pred ccccchhhhHHHHHHHHHHHHHhcCCCCCcc-eEEEecCCCceeeeeecccCCCCccCCC
Q 023706 111 PAIASTNAIISAACALETLKIASGCSKTLSN-YLTYNGVAGLHIKVTEFVKDKDCLVCGP 169 (278)
Q Consensus 111 PAIaTT~AiVagl~~~E~~K~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~C~vC~~ 169 (278)
+.+++++++||++|++|++|+|.|.++.+.+ .+.+++.. ..++.+++.++|+|++|+.
T Consensus 24 GVlg~~~giigslqA~eaik~l~g~~~~l~~~l~~~D~~~-~~~~~i~~~k~~~C~~C~~ 82 (84)
T PF05237_consen 24 GVLGPVVGIIGSLQANEAIKLLLGIGEPLSGKLLTIDLLN-MSFRSIRIKKNPDCPVCGP 82 (84)
T ss_dssp -B-HHHHHHHHHHHHHHHHHHHCT-S---BTEEEEEETTT-TEEEEEE----TT-TTT--
T ss_pred ccccchHHHHHHHHHHHHHHHHHhcCCchhhheeeEECCC-CeEEEEecCCCccCcCcCc
Confidence 4688888999999999999999998776665 45556544 5788999999999999985
No 16
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.31 E-value=7.6e-12 Score=118.49 Aligned_cols=97 Identities=22% Similarity=0.309 Sum_probs=78.6
Q ss_pred CEEeeecCcceEEEEEcCCCCCcccccCCCCCCCCCCCcccccCCCCCcchhhhhhhhhhhcccCCCCccCCCChHHHHH
Q 023706 1 MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQW 80 (278)
Q Consensus 1 LIe~Gt~G~~G~v~vi~p~~t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~HcI~wa~~~~~~~~~~~~~FdkDd~~hi~f 80 (278)
+|.|++.|+.||+.++.|+.++||+|.++..|+....|.|+
T Consensus 146 ~v~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~c~--------------------------------------- 186 (355)
T PRK05597 146 HVWASILGFDAQLSVFHAGHGPIYEDLFPTPPPPGSVPSCS--------------------------------------- 186 (355)
T ss_pred EEEEEEecCeEEEEEEcCCCCCCHHHhCCCCCCccCCCCcc---------------------------------------
Confidence 58999999999999999999999999987544445667774
Q ss_pred HHHHHHHHHHHhCCCCccchhhhhhhccccccccchhhhHHHHHHHHHHHHHhcCCCCCcc-eEEEecCCCceeeeeecc
Q 023706 81 VYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSN-YLTYNGVAGLHIKVTEFV 159 (278)
Q Consensus 81 I~aaanlRA~~y~I~~~~~~~~k~iag~IIPAIaTT~AiVagl~~~E~~K~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~ 159 (278)
..+++++++++||++|++|++|+|+|.++.+.+ .+.++... ..++.+++.
T Consensus 187 ----------------------------~~gv~g~~~~~~g~~~a~e~ik~l~g~~~~l~~~l~~~d~~~-~~~~~~~~~ 237 (355)
T PRK05597 187 ----------------------------QAGVLGPVVGVVGSAMAMEALKLITGVGTPLIGKLGYYDSLD-GTWEYIPVV 237 (355)
T ss_pred ----------------------------ccCcchhHHHHHHHHHHHHHHHHHhCCCCcCcCeEEEEECCC-CeEEEEecc
Confidence 234788999999999999999999998776665 55566544 567788888
Q ss_pred cCCCCc
Q 023706 160 KDKDCL 165 (278)
Q Consensus 160 ~~p~C~ 165 (278)
++|+|.
T Consensus 238 ~~~~~~ 243 (355)
T PRK05597 238 GNPAVL 243 (355)
T ss_pred CCCCCc
Confidence 899885
No 17
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=99.30 E-value=1.3e-11 Score=111.00 Aligned_cols=97 Identities=24% Similarity=0.494 Sum_probs=73.8
Q ss_pred CEEeeecCcceEEEEEc-CCCCCcccccCCCCCCCCCCCcccccCCCCCcchhhhhhhhhhhcccCCCCccCCCChHHHH
Q 023706 1 MVDGGTEGFKGHARVII-PGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQ 79 (278)
Q Consensus 1 LIe~Gt~G~~G~v~vi~-p~~t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~HcI~wa~~~~~~~~~~~~~FdkDd~~hi~ 79 (278)
+|.||+.|+.|++.++. +..++||+|.++..|.. .+.|.
T Consensus 142 ~v~~~~~g~~G~v~~~~~~~~~~c~~C~~~~~~~~--~~~~~-------------------------------------- 181 (240)
T TIGR02355 142 LVSGAAIRMEGQVSVFTYQDGEPCYRCLSRLFGEN--ALSCV-------------------------------------- 181 (240)
T ss_pred EEEEEecccEeEEEEEecCCCCCccccccccCCCC--CCCcc--------------------------------------
Confidence 58899999999999875 44689999987533321 11121
Q ss_pred HHHHHHHHHHHHhCCCCccchhhhhhhccccccccchhhhHHHHHHHHHHHHHhcCCCCCcc-eEEEecCCCceeeeeec
Q 023706 80 WVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSN-YLTYNGVAGLHIKVTEF 158 (278)
Q Consensus 80 fI~aaanlRA~~y~I~~~~~~~~k~iag~IIPAIaTT~AiVagl~~~E~~K~l~g~~~~~~~-~~~~~~~~~~~~~~~~~ 158 (278)
..++++++++++|++|++|++|+|+|.++.+.+ .+.++.. ...+..+++
T Consensus 182 -----------------------------~~gv~~p~~~~~~~~~a~e~ik~l~g~~~~l~g~ll~~d~~-~~~~~~~~~ 231 (240)
T TIGR02355 182 -----------------------------EAGVMAPVVGVVGSLQAMEAIKVLAGIGKPLSGKILMIDAM-TMSFREMKL 231 (240)
T ss_pred -----------------------------ccCccchHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECC-CCEEEEEec
Confidence 234788999999999999999999998776755 4556644 456688888
Q ss_pred ccCCCCccC
Q 023706 159 VKDKDCLVC 167 (278)
Q Consensus 159 ~~~p~C~vC 167 (278)
.++|+|++|
T Consensus 232 ~~~~~C~~C 240 (240)
T TIGR02355 232 PKNPTCPVC 240 (240)
T ss_pred cCCccCCCC
Confidence 999999998
No 18
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.29 E-value=2.4e-11 Score=115.69 Aligned_cols=122 Identities=18% Similarity=0.192 Sum_probs=91.8
Q ss_pred CEEeeecCcceEEEEEcCCC---CCcccccCCCCCCCCCCCcccccCCCCCcchhhhhhhhhhhcccCCCCccCCCChHH
Q 023706 1 MVDGGTEGFKGHARVIIPGV---TPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEH 77 (278)
Q Consensus 1 LIe~Gt~G~~G~v~vi~p~~---t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~HcI~wa~~~~~~~~~~~~~FdkDd~~h 77 (278)
+|.+++.|+.||+.++.|+. ++||+|.++..|+....|.|.
T Consensus 159 ~v~~~~~g~~G~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~c~------------------------------------ 202 (370)
T PRK05600 159 LVWGTVLRFHGELAVFNSGPDHRGVGLRDLFPEQPSGDSIPDCA------------------------------------ 202 (370)
T ss_pred EEEEEEecCEEEEEEEecCCCCCCCCcHhhCCCCCccccCCCCc------------------------------------
Confidence 58999999999999998763 789999987544444456663
Q ss_pred HHHHHHHHHHHHHHhCCCCccchhhhhhhccccccccchhhhHHHHHHHHHHHHHhcCCCCCcc-eEEEecCCCceeeee
Q 023706 78 MQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSN-YLTYNGVAGLHIKVT 156 (278)
Q Consensus 78 i~fI~aaanlRA~~y~I~~~~~~~~k~iag~IIPAIaTT~AiVagl~~~E~~K~l~g~~~~~~~-~~~~~~~~~~~~~~~ 156 (278)
..+++++++++||++|++|++|+|+|.++.+.+ .+.+++.. ..+..+
T Consensus 203 -------------------------------~~gvlg~~~~~ig~~~a~eaik~l~g~g~~l~g~ll~~d~~~-~~~~~~ 250 (370)
T PRK05600 203 -------------------------------TAGVLGATTAVIGALMATEAIKFLTGIGDVQPGTVLSYDALT-ATTRSF 250 (370)
T ss_pred -------------------------------cCCcchhHHHHHHHHHHHHHHHHHhCCCCCCcCcEEEEECCC-CEEEEE
Confidence 235788999999999999999999998776665 56666554 566888
Q ss_pred ecccCCCCccCCC-cEEEEeCCCCCHHHHHHHHHcC
Q 023706 157 EFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEH 191 (278)
Q Consensus 157 ~~~~~p~C~vC~~-~~~i~i~~~~TL~~li~~l~~~ 191 (278)
++.++|+|++|.. ..... ...+|..++.+.+.+.
T Consensus 251 ~~~~~~~c~~~~~~~~~~~-~~~~~~~el~~~l~~~ 285 (370)
T PRK05600 251 RVGADPARPLVTRLRPSYE-AARTDTTSLIDATLNG 285 (370)
T ss_pred EecCCCCCCccccccCcch-hcccCHHHHHHHHhcC
Confidence 8899999998875 11111 1146888888887654
No 19
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=99.28 E-value=1.9e-11 Score=115.02 Aligned_cols=99 Identities=25% Similarity=0.443 Sum_probs=74.8
Q ss_pred CEEeeecCcceEEEEEcCCCCCcccccCCCCCCCCCCCcccccCCCCCcchhhhhhhhhhhcccCCCCccCCCChHHHHH
Q 023706 1 MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQW 80 (278)
Q Consensus 1 LIe~Gt~G~~G~v~vi~p~~t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~HcI~wa~~~~~~~~~~~~~FdkDd~~hi~f 80 (278)
+|.+|+.|+.|++.++.|+.++||+|.++..|.. .+.|.
T Consensus 144 ~i~~~~~g~~G~~~~~~p~~~pC~~Cl~~~~~~~--~~~c~--------------------------------------- 182 (339)
T PRK07688 144 WIYGACVGSYGLSYTIIPGKTPCLRCLLQSIPLG--GATCD--------------------------------------- 182 (339)
T ss_pred EEEEeeeeeeeEEEEECCCCCCCeEeecCCCCCC--CCCCc---------------------------------------
Confidence 5889999999999999999999999998643321 13442
Q ss_pred HHHHHHHHHHHhCCCCccchhhhhhhccccccccchhhhHHHHHHHHHHHHHhcCCCCCcceE-EEecCCCceeeeeec-
Q 023706 81 VYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYL-TYNGVAGLHIKVTEF- 158 (278)
Q Consensus 81 I~aaanlRA~~y~I~~~~~~~~k~iag~IIPAIaTT~AiVagl~~~E~~K~l~g~~~~~~~~~-~~~~~~~~~~~~~~~- 158 (278)
-.+++++++++||++|++|++|+|+|.++.+.+.+ .++... ..+..+++
T Consensus 183 ----------------------------~~gv~~p~~~~i~~~~a~ealk~l~g~~~~l~~~l~~~d~~~-~~~~~~~~~ 233 (339)
T PRK07688 183 ----------------------------TAGIISPAVQIVASYQVTEALKLLVGDYEALRDGLVSFDVWK-NEYSCMNVQ 233 (339)
T ss_pred ----------------------------cCCcccHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCC-CeEEEEEec
Confidence 12367778899999999999999999877676644 555443 45566654
Q ss_pred -ccCCCCccCCC
Q 023706 159 -VKDKDCLVCGP 169 (278)
Q Consensus 159 -~~~p~C~vC~~ 169 (278)
.++|+|++|+.
T Consensus 234 ~~~~~~Cp~Cg~ 245 (339)
T PRK07688 234 KLKKDNCPSCGE 245 (339)
T ss_pred CCCCCCCCCCCC
Confidence 36799999985
No 20
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=99.28 E-value=2.7e-11 Score=113.11 Aligned_cols=77 Identities=17% Similarity=0.251 Sum_probs=54.7
Q ss_pred ccccchhhhHHHHHHHHHHHHHhcCCCC-Ccc-eEEEecCCCceeeeeecccCCCCccCCCcEEEEeCC-CCCHHHHHHH
Q 023706 111 PAIASTNAIISAACALETLKIASGCSKT-LSN-YLTYNGVAGLHIKVTEFVKDKDCLVCGPGVLIELDT-SVTLEKFINL 187 (278)
Q Consensus 111 PAIaTT~AiVagl~~~E~~K~l~g~~~~-~~~-~~~~~~~~~~~~~~~~~~~~p~C~vC~~~~~i~i~~-~~TL~~li~~ 187 (278)
++++++++++++++++|++ ++.|.+.. +.+ .+.++... ..++.+.+.++|+|++|+...++..+. +++=+++++.
T Consensus 238 gv~gp~~giigsl~a~Eai-~i~g~g~~~l~g~ll~id~~t-~~~~~~~l~k~p~Cp~CG~~~~~~~~~~~~~~~~~~~~ 315 (318)
T TIGR03603 238 ELIFPLLNIKKNLVVSEIF-AIGSLGTSKFEGRLLSINLPT-LEIQFQDILKQSCCSTCGTFNKIKFEEQNISTRNIVKE 315 (318)
T ss_pred CeehhHHHHHHHHHHHHHH-HHhCCCCcccCCeEEEEECCC-CeEEEEecCCCCCCcccCCccccchhhhhhhHHHHHHH
Confidence 3577788999999999999 99987664 434 55566544 566788888999999999733344432 4555666665
Q ss_pred HH
Q 023706 188 LE 189 (278)
Q Consensus 188 l~ 189 (278)
+.
T Consensus 316 ~~ 317 (318)
T TIGR03603 316 LL 317 (318)
T ss_pred Hh
Confidence 53
No 21
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=99.20 E-value=7.8e-11 Score=106.20 Aligned_cols=94 Identities=23% Similarity=0.505 Sum_probs=72.3
Q ss_pred CEEeeecCcceEEEEEcCCC-CCcccccCCCCCCCCCCCcccccCCCCCcchhhhhhhhhhhcccCCCCccCCCChHHHH
Q 023706 1 MVDGGTEGFKGHARVIIPGV-TPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQ 79 (278)
Q Consensus 1 LIe~Gt~G~~G~v~vi~p~~-t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~HcI~wa~~~~~~~~~~~~~FdkDd~~hi~ 79 (278)
+|.+|+.|+.|++.++.|+. ++||+|.++..|+. . ..|.
T Consensus 150 ~v~~~~~g~~G~v~~~~~~~~~~c~~c~~~~~~~~-~-~~~~-------------------------------------- 189 (245)
T PRK05690 150 LVSGAAIRMEGQVTVFTYQDDEPCYRCLSRLFGEN-A-LTCV-------------------------------------- 189 (245)
T ss_pred EEEeeeccCCceEEEEecCCCCceeeeccCCCCCC-C-CCcc--------------------------------------
Confidence 58899999999999999875 89999998643321 1 1231
Q ss_pred HHHHHHHHHHHHhCCCCccchhhhhhhccccccccchhhhHHHHHHHHHHHHHhcCCCCCcc-eEEEecCCCceeeeeec
Q 023706 80 WVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSN-YLTYNGVAGLHIKVTEF 158 (278)
Q Consensus 80 fI~aaanlRA~~y~I~~~~~~~~k~iag~IIPAIaTT~AiVagl~~~E~~K~l~g~~~~~~~-~~~~~~~~~~~~~~~~~ 158 (278)
-.++++++++++|+++++|++|+|+|.++.+.+ .+.++... ..+..+.+
T Consensus 190 -----------------------------~~gv~~~~~~~~~~~~a~e~ik~l~g~~~~l~g~l~~~d~~~-~~~~~~~~ 239 (245)
T PRK05690 190 -----------------------------EAGVMAPLVGVIGSLQAMEAIKLLTGYGEPLSGRLLLYDAMT-MQFREMKL 239 (245)
T ss_pred -----------------------------cCCccchHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCC-CEEEEEEc
Confidence 134788999999999999999999998776665 45566544 56688888
Q ss_pred ccCCCC
Q 023706 159 VKDKDC 164 (278)
Q Consensus 159 ~~~p~C 164 (278)
.++|+|
T Consensus 240 ~~~~~C 245 (245)
T PRK05690 240 KRDPGC 245 (245)
T ss_pred CCCcCC
Confidence 899988
No 22
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.16 E-value=1.6e-10 Score=110.91 Aligned_cols=97 Identities=21% Similarity=0.284 Sum_probs=75.2
Q ss_pred CEEeeecCcceEEEEEcC----CCCCcccccCCCCCCCCCCCcccccCCCCCcchhhhhhhhhhhcccCCCCccCCCChH
Q 023706 1 MVDGGTEGFKGHARVIIP----GVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPE 76 (278)
Q Consensus 1 LIe~Gt~G~~G~v~vi~p----~~t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~HcI~wa~~~~~~~~~~~~~FdkDd~~ 76 (278)
+|.||+.|+.||+.++.| +.++||+|.++..|+...+|.|.-
T Consensus 160 ~v~~~~~g~~G~v~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~---------------------------------- 205 (392)
T PRK07878 160 YVWGSIYRFEGQASVFWEDAPDGLGLNYRDLYPEPPPPGMVPSCAE---------------------------------- 205 (392)
T ss_pred EEEEEeccCEEEEEEEecCCCCCCCCeeeeecCCCCCccCCCCCcc----------------------------------
Confidence 589999999999999874 378999999864344344555631
Q ss_pred HHHHHHHHHHHHHHHhCCCCccchhhhhhhccccccccchhhhHHHHHHHHHHHHHhcCCCCCcc-eEEEecCCCceeee
Q 023706 77 HMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSN-YLTYNGVAGLHIKV 155 (278)
Q Consensus 77 hi~fI~aaanlRA~~y~I~~~~~~~~k~iag~IIPAIaTT~AiVagl~~~E~~K~l~g~~~~~~~-~~~~~~~~~~~~~~ 155 (278)
.+++++++++||++|++|++|+|+|.++.+.+ .+.++... ..+..
T Consensus 206 ---------------------------------~gv~g~~~~~~g~~~a~e~ik~l~g~~~~~~~~l~~~d~~~-~~~~~ 251 (392)
T PRK07878 206 ---------------------------------GGVLGVLCASIGSIMGTEAIKLITGIGEPLLGRLMVYDALE-MTYRT 251 (392)
T ss_pred ---------------------------------CCccchHHHHHHHHHHHHHHHHHhCCCCCCcCcEEEEECCC-Cceee
Confidence 23688899999999999999999998776655 55666544 45677
Q ss_pred eecccCCCCc
Q 023706 156 TEFVKDKDCL 165 (278)
Q Consensus 156 ~~~~~~p~C~ 165 (278)
+++.++|+|+
T Consensus 252 ~~~~~~~~C~ 261 (392)
T PRK07878 252 IKIRKDPSTP 261 (392)
T ss_pred EeeccCCCCC
Confidence 8888999997
No 23
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.14 E-value=9.7e-11 Score=108.46 Aligned_cols=101 Identities=27% Similarity=0.555 Sum_probs=78.9
Q ss_pred CEEeeecCcceEEEEEcCCCCCcccccCCCCCCCCCCCcccccCCCCCcchhhhhhhhhhhcccCCCCccCCCChHHHHH
Q 023706 1 MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQW 80 (278)
Q Consensus 1 LIe~Gt~G~~G~v~vi~p~~t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~HcI~wa~~~~~~~~~~~~~FdkDd~~hi~f 80 (278)
||.|...++.||.+++.-...|||+|.|+..|++.....|.-
T Consensus 184 LVSgSaLr~EGQLtvYny~~GPCYRClFP~Ppp~~~vt~C~d-------------------------------------- 225 (427)
T KOG2017|consen 184 LVSGSALRWEGQLTVYNYNNGPCYRCLFPNPPPPEAVTNCAD-------------------------------------- 225 (427)
T ss_pred ccccccccccceeEEeecCCCceeeecCCCCcChHHhccccc--------------------------------------
Confidence 678889999999999987889999999987555455555521
Q ss_pred HHHHHHHHHHHhCCCCccchhhhhhhccccccccchhhhHHHHHHHHHHHHHhcCCCCCcce-EEEecCCCceeeeeec-
Q 023706 81 VYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNY-LTYNGVAGLHIKVTEF- 158 (278)
Q Consensus 81 I~aaanlRA~~y~I~~~~~~~~k~iag~IIPAIaTT~AiVagl~~~E~~K~l~g~~~~~~~~-~~~~~~~~~~~~~~~~- 158 (278)
.| .++..+++|++||++|++|++.|.++.+..+ ++|++..+ .++.+++
T Consensus 226 -------------------------gG----VlGpv~GviG~mQALE~iKli~~~~~~~s~~lllfdg~~~-~~r~irlR 275 (427)
T KOG2017|consen 226 -------------------------GG----VLGPVTGVIGCMQALETIKLIAGIGESLSGRLLLFDGLSG-HFRTIRLR 275 (427)
T ss_pred -------------------------Cc----eeecchhhhhHHHHHHHHHHHHccCccCCcceEEEecccc-eeEEEEec
Confidence 12 3556678999999999999999988877765 56777665 6677776
Q ss_pred ccCCCCccCCC
Q 023706 159 VKDKDCLVCGP 169 (278)
Q Consensus 159 ~~~p~C~vC~~ 169 (278)
.+.++|.+||.
T Consensus 276 ~r~~~C~~Cg~ 286 (427)
T KOG2017|consen 276 SRRPKCAVCGK 286 (427)
T ss_pred cCCCCCcccCC
Confidence 47899999985
No 24
>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised. ; PDB: 3CMM_A.
Probab=99.13 E-value=1.2e-10 Score=94.62 Aligned_cols=80 Identities=23% Similarity=0.348 Sum_probs=57.7
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeC-CCchhhhhccccCCcHHHhhcccccceeeecccccc
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQA-PPVLEEMTRSNLSLPLYDLMDKVAKDILHVTGVTGQ 248 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~-~~~~~~~~~~~l~~~l~~lv~~~~~~~~~~~~~~~v 248 (278)
|+||+++.++||++|+++++++| ++++.||++|+++||..+ +++ .++||+++|++|++..+...+
T Consensus 34 WDr~~v~~~~Tl~~li~~~~~~~--~lev~ml~~g~~~LY~~f~~~~----~~~rl~~~i~elv~~v~k~~~-------- 99 (125)
T PF09358_consen 34 WDRIEVNGDMTLQELIDYFKEKY--GLEVTMLSQGVSLLYSSFPPPK----HKERLKMPISELVEEVTKKPI-------- 99 (125)
T ss_dssp T-EEEEES--BHHHHHHHHHHTT--S-EEEEEEETTEEEEETT-HHH----HHHHTTSBHHHHHHHHTSS----------
T ss_pred eeEEEEcCCCCHHHHHHHHHHHh--CceEEEEEeCCEEEEecCChhh----hHHHhCCcHHHHHHHhcCCCC--------
Confidence 99999999999999999999999 899999999999999877 222 334999999999886531223
Q ss_pred ccCCcceEEEEEEEEec
Q 023706 249 SDKKTSCLRKLRVVFRG 265 (278)
Q Consensus 249 ~d~~~~~~~~l~~~~~~ 265 (278)
.+.+. -+.|.|.+.+
T Consensus 100 ~~~~~--~l~l~v~~~d 114 (125)
T PF09358_consen 100 PPGQK--YLVLEVSCED 114 (125)
T ss_dssp -TT----EEEEEEEEE-
T ss_pred CCCce--EEEEEEEEeC
Confidence 33333 4677888875
No 25
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=99.07 E-value=4.8e-10 Score=85.55 Aligned_cols=82 Identities=23% Similarity=0.283 Sum_probs=61.2
Q ss_pred EEeCC-CCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccccceeeecccccccc
Q 023706 173 IELDT-SVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDILHVTGVTGQSD 250 (278)
Q Consensus 173 i~i~~-~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~~~~~~~~~~~~v~d 250 (278)
+.++. .+||++|++.+.++ ++++..|.+..+.++||.+.. +.+..+++|+|++| +++| ++| .|+|
T Consensus 2 v~~d~~~~TL~~lv~~Vlk~-~Lg~~~P~v~~~~~ilyd~de----~~~~~~l~k~L~elgi~~g--s~L------~v~D 68 (87)
T PF14732_consen 2 VKVDTKKMTLGDLVEKVLKK-KLGMNEPDVSVGGTILYDSDE----EEYDDNLPKKLSELGIVNG--SIL------TVDD 68 (87)
T ss_dssp EEE-TTT-BHHHHHHHCCCC-CS--SSEEEEES-EEEE-SSS----SSSTTCTTSBGGGGT--TT---EE------EEEE
T ss_pred EEEechhCcHHHHHHHHHHh-ccCCCCCEEEeCCCEEEcCCc----chhhhcccCChhHcCCCCC--CEE------EEEE
Confidence 34553 68999999999887 589999999999999997632 33566999999999 9999 799 9999
Q ss_pred CCcceEEEEEEEEecCC
Q 023706 251 KKTSCLRKLRVVFRGVD 267 (278)
Q Consensus 251 ~~~~~~~~l~~~~~~~~ 267 (278)
+.|.+++.|.|.|++..
T Consensus 69 ~~q~~~~~i~i~h~~~~ 85 (87)
T PF14732_consen 69 FDQDFNLEINIKHREEL 85 (87)
T ss_dssp TTTTEEEEEEEEE-SSS
T ss_pred cCCCcEEEEEEEecCcc
Confidence 99999999999998653
No 26
>PRK08328 hypothetical protein; Provisional
Probab=98.98 E-value=2e-09 Score=96.27 Aligned_cols=77 Identities=25% Similarity=0.348 Sum_probs=60.0
Q ss_pred CEEeeecCcceEEEEEcCCCCCcccccCCCCCCCCCCCcccccCCCCCcchhhhhhhhhhhcccCCCCccCCCChHHHHH
Q 023706 1 MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQW 80 (278)
Q Consensus 1 LIe~Gt~G~~G~v~vi~p~~t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~HcI~wa~~~~~~~~~~~~~FdkDd~~hi~f 80 (278)
+|+||+.|+.|+++++.|+.|+||+|.++..++ .|.
T Consensus 146 ~i~g~~~g~~G~v~~~~p~~~~c~~~~~~~~~~-----~~~--------------------------------------- 181 (231)
T PRK08328 146 LVHGAVEGTYGQVTTIVPGKTKRLREIFPKVKK-----KKG--------------------------------------- 181 (231)
T ss_pred EEEEeeccCEEEEEEECCCCCCCHHHhCCCCCC-----ccc---------------------------------------
Confidence 589999999999999999999999999853111 110
Q ss_pred HHHHHHHHHHHhCCCCccchhhhhhhccccccccchhhhHHHHHHHHHHHHHhcCCCCCcce-EEEecCC
Q 023706 81 VYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNY-LTYNGVA 149 (278)
Q Consensus 81 I~aaanlRA~~y~I~~~~~~~~k~iag~IIPAIaTT~AiVagl~~~E~~K~l~g~~~~~~~~-~~~~~~~ 149 (278)
-.|.+++++++||+++++|++|+|+|.++.+.+. +.++...
T Consensus 182 ----------------------------~~~~~~~~~~ii~~~~a~e~~k~l~g~~~~~~~~l~~~d~~~ 223 (231)
T PRK08328 182 ----------------------------KFPILGATAGVIGSIQAMEVIKLITGYGEPLLNKLLIVDLAN 223 (231)
T ss_pred ----------------------------cCCcCchHHHHHHHHHHHHHHHHHhCCCCcccCeEEEEECCC
Confidence 1246789999999999999999999987766554 5555443
No 27
>PRK08223 hypothetical protein; Validated
Probab=98.87 E-value=1.2e-08 Score=93.81 Aligned_cols=97 Identities=14% Similarity=0.115 Sum_probs=70.6
Q ss_pred CEEeeecCcceEEEEEcCCCCCcccccCCC---CCC--------CCCCCcccccCCCCCcchhhhhhhhhhhcccCCCCc
Q 023706 1 MVDGGTEGFKGHARVIIPGVTPCFECTIWL---FPP--------QVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKS 69 (278)
Q Consensus 1 LIe~Gt~G~~G~v~vi~p~~t~Cy~C~~~~---~p~--------~~~~p~CTi~~~P~~~~HcI~wa~~~~~~~~~~~~~ 69 (278)
+|.|++.|+.||++++.|+ ++||+|.++. .|+ ....|.|.-+.....+ ++ |
T Consensus 147 ~V~~~~~g~~gqv~v~~p~-~p~~~~~f~~~~~~~~~~~~~~~~~~~~p~c~~~gvl~~~--~~-~-------------- 208 (287)
T PRK08223 147 ALTAAPLGMGTALLVFDPG-GMSFDDYFDLSDGMNEVEKAVRFLAGLAPSMLHRGYLADP--SR-V-------------- 208 (287)
T ss_pred EEEEeccCCeEEEEEEcCC-CCchhhhcCCCCCCCchhhhcccCCcCCCccccCCccccc--cc-c--------------
Confidence 5899999999999999996 8999999876 333 1467788655544222 00 0
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhCCCCccchhhhhhhccccccccchhhhHHHHHHHHHHHHHhcCCCCC-c-ceEEEec
Q 023706 70 FDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTL-S-NYLTYNG 147 (278)
Q Consensus 70 FdkDd~~hi~fI~aaanlRA~~y~I~~~~~~~~k~iag~IIPAIaTT~AiVagl~~~E~~K~l~g~~~~~-~-~~~~~~~ 147 (278)
.+-++-.|..++++++++++|++|++|+|+|.++.+ . .+++|++
T Consensus 209 ----------------------------------~~~~~~~p~~g~~~g~~g~~~a~E~ik~l~g~g~~~~~~~~~~~d~ 254 (287)
T PRK08223 209 ----------------------------------DLENRTGPSTGLACQLCAGVVATEVLKILLGRGRVYAAPWFHQFDA 254 (287)
T ss_pred ----------------------------------ccccccCCCccchHHHHHHHHHHHHHHHHhCCCCcCCCCeEEEEEc
Confidence 011235688999999999999999999999988764 3 3566665
Q ss_pred CC
Q 023706 148 VA 149 (278)
Q Consensus 148 ~~ 149 (278)
..
T Consensus 255 ~~ 256 (287)
T PRK08223 255 YR 256 (287)
T ss_pred CC
Confidence 44
No 28
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=98.81 E-value=2.8e-08 Score=88.53 Aligned_cols=87 Identities=30% Similarity=0.610 Sum_probs=64.4
Q ss_pred CEEeeecCcceEEEEEcCCCCCcccccCCCCCCCCCCCcccccCCCCCcchhhhhhhhhhhcccCCCCccCCCChHHHHH
Q 023706 1 MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQW 80 (278)
Q Consensus 1 LIe~Gt~G~~G~v~vi~p~~t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~HcI~wa~~~~~~~~~~~~~FdkDd~~hi~f 80 (278)
+|++|+.|+.|++.++.|+.++||+|.+...+.. ..+.|.
T Consensus 139 ~i~~g~~g~~g~v~~~~p~~~~c~~c~~~~~~~~-~~~~~~--------------------------------------- 178 (228)
T cd00757 139 LVSGAVLGFEGQVTVFIPGEGPCYRCLFPEPPPP-GVPSCA--------------------------------------- 178 (228)
T ss_pred EEEEEeccCEEEEEEECCCCCCCccccCCCCCCC-CCCccc---------------------------------------
Confidence 5899999999999999999999999998642221 112221
Q ss_pred HHHHHHHHHHHhCCCCccchhhhhhhccccccccchhhhHHHHHHHHHHHHHhcCCCCCc-ceEEEecCCCceeeee
Q 023706 81 VYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS-NYLTYNGVAGLHIKVT 156 (278)
Q Consensus 81 I~aaanlRA~~y~I~~~~~~~~k~iag~IIPAIaTT~AiVagl~~~E~~K~l~g~~~~~~-~~~~~~~~~~~~~~~~ 156 (278)
..|+++++++++|++++.|++|+|+|.++.+. .++.++... ..+..+
T Consensus 179 ----------------------------~~~~~~~~~~~~a~l~a~e~i~~l~g~~~~~~~~~~~~d~~~-~~~~~~ 226 (228)
T cd00757 179 ----------------------------EAGVLGPLVGVIGSLQALEALKILLGIGEPLAGRLLLFDALS-MSFRTL 226 (228)
T ss_pred ----------------------------cCCcchhHHHHHHHHHHHHHHHHHhCCCCcCcCeEEEEECCC-CEEEEE
Confidence 24688999999999999999999999875554 456666443 333443
No 29
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=98.78 E-value=1e-08 Score=89.76 Aligned_cols=63 Identities=29% Similarity=0.477 Sum_probs=52.4
Q ss_pred CEEeeecCcceEEEEEcCC-CCCcccccCCCCCCCCCCCcccccCCCCCcchhhhhhhhhhhcccCCCCccCCCChHHHH
Q 023706 1 MVDGGTEGFKGHARVIIPG-VTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQ 79 (278)
Q Consensus 1 LIe~Gt~G~~G~v~vi~p~-~t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~HcI~wa~~~~~~~~~~~~~FdkDd~~hi~ 79 (278)
+|++|+.|+.|+++++.|+ .++||+|.++. .+...|.|+
T Consensus 139 ~i~~~~~g~~G~~~~~~p~~~~~c~~c~~~~--~~~~~~~~~-------------------------------------- 178 (202)
T TIGR02356 139 LISAAVVGFGGQLMVFDPGGEGPCLRCLFPD--IADTGPSCA-------------------------------------- 178 (202)
T ss_pred EEEEEeccCeEEEEEEeCCCCCCChhhcCCC--CcccCCCCc--------------------------------------
Confidence 5899999999999999998 79999999863 123345564
Q ss_pred HHHHHHHHHHHHhCCCCccchhhhhhhccccccccchhhhHHHHHHHHHHHHH
Q 023706 80 WVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIA 132 (278)
Q Consensus 80 fI~aaanlRA~~y~I~~~~~~~~k~iag~IIPAIaTT~AiVagl~~~E~~K~l 132 (278)
..+++++++++||+++++|++|+|
T Consensus 179 -----------------------------~~~~~~~~~~~~~~~~a~e~~k~l 202 (202)
T TIGR02356 179 -----------------------------TAGVIGPVVGVIGSLQALEALKLL 202 (202)
T ss_pred -----------------------------cCCccchHHHHHHHHHHHHHHHhC
Confidence 345889999999999999999986
No 30
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=98.73 E-value=3.5e-08 Score=89.05 Aligned_cols=101 Identities=31% Similarity=0.622 Sum_probs=73.4
Q ss_pred CEEeeecCcceEEEEEcCC-CCCcccccCCCCCCCCCCC-cccccCCCCCcchhhhhhhhhhhcccCCCCccCCCChHHH
Q 023706 1 MVDGGTEGFKGHARVIIPG-VTPCFECTIWLFPPQVKFP-LCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHM 78 (278)
Q Consensus 1 LIe~Gt~G~~G~v~vi~p~-~t~Cy~C~~~~~p~~~~~p-~CTi~~~P~~~~HcI~wa~~~~~~~~~~~~~FdkDd~~hi 78 (278)
|+++|+.|++||+++|.|+ .++||+|.++..|++...+ .|.
T Consensus 148 li~~~~~~~~g~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~c~------------------------------------- 190 (254)
T COG0476 148 LVHGGAIGFEGQVTVIIPGDKTPCYRCLFPEKPPPGLVPTSCD------------------------------------- 190 (254)
T ss_pred eEeeeeccceEEEEEEecCCCCCcccccCCCCCCccccccccc-------------------------------------
Confidence 6899999999999999999 5999999998655443333 142
Q ss_pred HHHHHHHHHHHHHhCCCCccchhhhhhhccccccccchhhhHHHHHHHHHHHHHhcCC-CCCc-ceEEEecCCCceeeee
Q 023706 79 QWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCS-KTLS-NYLTYNGVAGLHIKVT 156 (278)
Q Consensus 79 ~fI~aaanlRA~~y~I~~~~~~~~k~iag~IIPAIaTT~AiVagl~~~E~~K~l~g~~-~~~~-~~~~~~~~~~~~~~~~ 156 (278)
. .+.+..+..+++.++++|++|+++|.+ +.+. ..+.++......+...
T Consensus 191 ------------~------------------~gv~~~~~~~~~~~~~~~~~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 240 (254)
T COG0476 191 ------------E------------------AGVLGPLVGVVGSLQALEAIKLLTGIGLEPLIGRLLLYDALDMERFRTL 240 (254)
T ss_pred ------------c------------------CCccccccchhhhHHHHHHHHHhcCCCccccccceeeeechhcccchhh
Confidence 0 123445556999999999999999987 4443 4556565554355666
Q ss_pred ecccCCC-CccCC
Q 023706 157 EFVKDKD-CLVCG 168 (278)
Q Consensus 157 ~~~~~p~-C~vC~ 168 (278)
...+++. |++|+
T Consensus 241 ~~~~~~~~~~~c~ 253 (254)
T COG0476 241 KLRRRPISCPVCG 253 (254)
T ss_pred hcccCCCCCCcCC
Confidence 6666766 99997
No 31
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=98.03 E-value=5.3e-06 Score=75.56 Aligned_cols=53 Identities=17% Similarity=0.327 Sum_probs=40.4
Q ss_pred ccccchhhhHHHHHHHHHHHHHhcCCCCCcceEEEecCCCceeeeeecccCCCCc
Q 023706 111 PAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCL 165 (278)
Q Consensus 111 PAIaTT~AiVagl~~~E~~K~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~C~ 165 (278)
-++.||.++|||+.++..+|+|.+.++ .+.|+-|+... -++.+.++.|||.|-
T Consensus 261 ASLPTTMgvvAG~LVqN~LK~LLNFGe-VS~YlGYNal~-DFFP~msmkPNPqCd 313 (422)
T KOG2336|consen 261 ASLPTTMGVVAGFLVQNSLKFLLNFGE-VSPYLGYNALS-DFFPTMSMKPNPQCD 313 (422)
T ss_pred ecCcchHHHHHHHHHHHHHHHHhhccc-cchhhcchhHH-hhCccccCCCCCCCC
Confidence 367899999999999999999998765 45566665433 345666778999885
No 32
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=97.92 E-value=1.4e-05 Score=73.69 Aligned_cols=126 Identities=17% Similarity=0.239 Sum_probs=79.3
Q ss_pred CEEeeecCcceEEEEEcCCCCCcccccCCCCCCCCCCCcccccCCCCCcchhhhhhhh-------hhhcccC--------
Q 023706 1 MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHL-------IKWDEVH-------- 65 (278)
Q Consensus 1 LIe~Gt~G~~G~v~vi~p~~t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~HcI~wa~~-------~~~~~~~-------- 65 (278)
+|.+++.|+.|++.+.. .+||.|.-+...++++.++|+|.+.+....||+.=.++ +.|.+..
T Consensus 133 fI~a~~~G~~G~vf~df---g~~f~~~d~~ge~p~~~~i~~I~~~~~g~V~~~~~~~h~l~~gd~V~f~ev~gm~~lN~~ 209 (286)
T cd01491 133 FISADTRGLFGSIFCDF---GDEFTVYDPNGEEPKSGMISSISKDNPGVVTCLDETRHGFEDGDYVTFSEVEGMTELNGC 209 (286)
T ss_pred EEEEeccccEEEEEecC---CCeEEEeCCCCCcCCccceeeeecCCceEEEEECCcccCCcCCCEEEEeccCcchhhCCC
Confidence 58999999999999833 38888874432345789999999988899999654333 1111111
Q ss_pred --------CCCccCCCChHHHHHHHHHHHHHHHHhCCCCccchhhhhhhccccccccchhhhHHHHHHHHHHHHHhcCCC
Q 023706 66 --------SGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSK 137 (278)
Q Consensus 66 --------~~~~FdkDd~~hi~fI~aaanlRA~~y~I~~~~~~~~k~iag~IIPAIaTT~AiVagl~~~E~~K~l~g~~~ 137 (278)
+|..|.-+|-.. |+ ....-+++-.+- +++..|+++|+++.|++|.++|+..
T Consensus 210 ~~~~v~~~~~~~f~i~d~~~--------------~~-----~y~~gG~~~qvK--~~~~~~~~g~~~~q~~~~~~~~~~~ 268 (286)
T cd01491 210 EPRKIKVKGPYTFSIGDTSS--------------FS-----EYIRGGIVTQVK--LSPMAAFFGGLAAQEVLKACSGKFT 268 (286)
T ss_pred ccEEEEECCCCeEEECcCcC--------------cC-----ccccCcEEEEEe--cccHHHHhhhHHHHHHHHHcCCCCC
Confidence 122222111110 00 000111111121 7788899999999999999999887
Q ss_pred CCcceEEEecCCC
Q 023706 138 TLSNYLTYNGVAG 150 (278)
Q Consensus 138 ~~~~~~~~~~~~~ 150 (278)
++..|+.++....
T Consensus 269 p~~q~~~~~~~~~ 281 (286)
T cd01491 269 PLKQWLYFDALEC 281 (286)
T ss_pred ceeeEEEecHHHh
Confidence 7888888775543
No 33
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=97.28 E-value=0.00021 Score=76.15 Aligned_cols=108 Identities=27% Similarity=0.568 Sum_probs=92.0
Q ss_pred CEEeeecCcceEEEEEcCCCCCcccccCCCCCCCCCCCcccccCCCCCcchhhhhhhhh---------------------
Q 023706 1 MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLI--------------------- 59 (278)
Q Consensus 1 LIe~Gt~G~~G~v~vi~p~~t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~HcI~wa~~~--------------------- 59 (278)
||+||+.|++||+++++|+.|+||+|..+ |+++++|+||||+||++++|||+|||++
T Consensus 546 li~~gt~G~~G~v~v~ip~~te~y~~~~d--~~~~~~P~Ctl~~~P~~~~h~i~wa~~~f~~~F~~~~~~~~~~~~~~~~ 623 (1008)
T TIGR01408 546 LLESGTLGTKGNTQVVVPHLTESYGSSRD--PPEKEIPFCTLKSFPAAIEHTIQWARDKFEGLFSHKPSLVNKYLSSPSS 623 (1008)
T ss_pred EEEEeccCceeeEEEEeCCCcCCCCCCCC--CCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHhhHHHHHHHhhChHH
Confidence 69999999999999999999999999964 7889999999999999999999999993
Q ss_pred ------------------------------------hhccc-----C-------------------------------CC
Q 023706 60 ------------------------------------KWDEV-----H-------------------------------SG 67 (278)
Q Consensus 60 ------------------------------------~~~~~-----~-------------------------------~~ 67 (278)
.|++. | .|
T Consensus 624 ~~~~~~~~~~~~~~~~l~~i~~~l~~~~p~~~~~cv~~a~~~f~~~F~~~I~qLl~~fP~d~~~~~G~~fWs~~kr~P~p 703 (1008)
T TIGR01408 624 AEEVLQKIQSGHSREGLEQIIKLLSKEKPRNFSQCVEWARLKFEKYFNNKALQLLHCFPLDIRTSTGSPFWSSPKRPPSP 703 (1008)
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCccccCCCCCCCc
Confidence 11111 1 47
Q ss_pred CccCCCChHHHHHHHHHHHHHHHHhCCCCc--cc--hhhhhhhcccc
Q 023706 68 KSFDPDDPEHMQWVYSEAVKRAELFGIPGV--TY--SLTQGVVKNII 110 (278)
Q Consensus 68 ~~FdkDd~~hi~fI~aaanlRA~~y~I~~~--~~--~~~k~iag~II 110 (278)
+.||+||+.|++||+++|||||++|||+.. ++ ...+.++.++.
T Consensus 704 l~Fd~~~~~h~~Fi~aaanL~A~~ygi~~~~~~~~~~~~~~~~~~~~ 750 (1008)
T TIGR01408 704 LKFDLNEPLHLSFIQAAAKLYATVYGIPFAEEDLSADALLNILSEVK 750 (1008)
T ss_pred eeeCCCCHHHHHHHHHHHHHHHHHhCCCCccccchHHHHHHHHhcCC
Confidence 899999999999999999999999999974 33 55556666543
No 34
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=96.81 E-value=0.0022 Score=57.94 Aligned_cols=43 Identities=35% Similarity=0.424 Sum_probs=35.0
Q ss_pred CEEeee--------cCc-----ceEEEEEcCCCCCcccccCCCCC-CCCCCCccccc
Q 023706 1 MVDGGT--------EGF-----KGHARVIIPGVTPCFECTIWLFP-PQVKFPLCTLA 43 (278)
Q Consensus 1 LIe~Gt--------~G~-----~G~v~vi~p~~t~Cy~C~~~~~p-~~~~~p~CTi~ 43 (278)
+||+|+ .|. +|++++++|+.|+||.|.....+ ++.+.|+||++
T Consensus 137 ~ld~Gn~~~~gqv~~g~i~~~~k~~~~~~lP~vte~y~~~~d~~~~~~~~~PsCsla 193 (244)
T TIGR03736 137 WLDLGNRADDGQVILGQVPSRAKGENRLRLPHVGELFPELIDPSVDPDDDRPSCSLA 193 (244)
T ss_pred eecccCCCCCCcEEEEecccccccCCceecCCchhhCcccccCccCCCCCCCCchHH
Confidence 478888 555 89999999999999999986322 56889999975
No 35
>PRK14852 hypothetical protein; Provisional
Probab=96.37 E-value=0.0044 Score=65.56 Aligned_cols=95 Identities=15% Similarity=0.246 Sum_probs=62.2
Q ss_pred CEEeeecCcceEEEEEcCCCCCcccccCCCCCCCCCCCcccccCCCCCcchhhhhhhhhhhcccCCCCccCCCChHHHHH
Q 023706 1 MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQW 80 (278)
Q Consensus 1 LIe~Gt~G~~G~v~vi~p~~t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~HcI~wa~~~~~~~~~~~~~FdkDd~~hi~f 80 (278)
+|.+|+.|++||+++|.|+. .||+|.++..|. -| +.|-+. . | .+.. .+.+.|+.+
T Consensus 452 ~I~ag~~G~~g~v~v~~p~~-~~~~~~f~~~~~---~p----------~~~~~~-----~----~-~l~~-~p~~~~~~~ 506 (989)
T PRK14852 452 VITAGPLGYSCALLVFMPGG-MNFDSYFGIDDD---TP----------PMEGYL-----R----F-GMGL-APRPAHLGY 506 (989)
T ss_pred EEEeeccccCeeEEEEcCCC-CCHHHhCCCCCC---Cc----------hHhhhh-----h----h-hccC-Ccchhhhcc
Confidence 58999999999999999864 999999975332 11 111110 0 0 0000 111345444
Q ss_pred HHHHHHHHHHHhCCCCccchhhhhhhccccccccchhhhHHHHHHHHHHHHHhcCCC
Q 023706 81 VYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSK 137 (278)
Q Consensus 81 I~aaanlRA~~y~I~~~~~~~~k~iag~IIPAIaTT~AiVagl~~~E~~K~l~g~~~ 137 (278)
+ .++++ .+...--|.++.-..+-||+++.|++|++.|.+.
T Consensus 507 ~-~~~~~----------------~l~~~~~Ps~~~~~~l~a~~~~~~~~killg~~~ 546 (989)
T PRK14852 507 M-DRRFV----------------SLHDRRGPSLDIACHLCAGMAATEAVRILLHRRG 546 (989)
T ss_pred c-Ccccc----------------cccccCCCchHHHHHHhHHHHHHHHHHHHhCCCc
Confidence 4 22221 3445677999999999999999999999999754
No 36
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.26 E-value=0.007 Score=53.45 Aligned_cols=27 Identities=26% Similarity=0.208 Sum_probs=24.1
Q ss_pred cccccchhhhHHHHHHHHHHHHHhcCC
Q 023706 110 IPAIASTNAIISAACALETLKIASGCS 136 (278)
Q Consensus 110 IPAIaTT~AiVagl~~~E~~K~l~g~~ 136 (278)
.+++++++++||++|++|++|+|+|..
T Consensus 184 ~gv~~~~~~~i~~~~a~ealk~l~~~~ 210 (212)
T PRK08644 184 NPLMAPRVNIAAAHQANLVLRLILGEE 210 (212)
T ss_pred CCccchHHHHHHHHHHHHHHHHHhCCC
Confidence 457899999999999999999999854
No 37
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=96.23 E-value=0.024 Score=57.64 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=20.1
Q ss_pred ccchhhhHHHHHHHHHHHHHhcCC
Q 023706 113 IASTNAIISAACALETLKIASGCS 136 (278)
Q Consensus 113 IaTT~AiVagl~~~E~~K~l~g~~ 136 (278)
+.+..|+||++++.|+++.|...+
T Consensus 540 trPgv~~ias~~AvEll~~llqhp 563 (664)
T TIGR01381 540 TRPGTAMIASGLAVELLVSVLQHP 563 (664)
T ss_pred ecchHHHHHHHHHHHHHHHHhcCC
Confidence 456677999999999999998753
No 38
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.011 Score=54.66 Aligned_cols=47 Identities=23% Similarity=0.374 Sum_probs=41.3
Q ss_pred hhccccccccchhhhHHHHHHHHHHHHHhcCCCCCcceEEEecCCCc
Q 023706 105 VVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGL 151 (278)
Q Consensus 105 iag~IIPAIaTT~AiVagl~~~E~~K~l~g~~~~~~~~~~~~~~~~~ 151 (278)
..+.+-+-++++.|+|+|.++.|++|.+++...+++||++|+|..+.
T Consensus 276 f~~~~~~ef~Pv~AvVGGivaQevIk~isk~~~Pl~Nff~fdg~~g~ 322 (331)
T KOG2014|consen 276 FLSLIFTEFAPVCAVVGGILAQEVIKAISKKGPPLNNFFIFDGETGK 322 (331)
T ss_pred HHHhcccccCchhhhhhhHhHHHHHHHhhcCCCcccceEEeecccCc
Confidence 44566788999999999999999999999998899999999987653
No 39
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=95.90 E-value=0.013 Score=59.08 Aligned_cols=52 Identities=17% Similarity=0.270 Sum_probs=33.5
Q ss_pred chhhhHHHHHHHHHHHHHhcCCCC-Cc-ceEEEecCCCceeeeeecccCCCCccCC
Q 023706 115 STNAIISAACALETLKIASGCSKT-LS-NYLTYNGVAGLHIKVTEFVKDKDCLVCG 168 (278)
Q Consensus 115 TT~AiVagl~~~E~~K~l~g~~~~-~~-~~~~~~~~~~~~~~~~~~~~~p~C~vC~ 168 (278)
+|.||++++++.|++|++++.... .. .++.++... +........|.|.|. |.
T Consensus 282 at~AmlAnviv~ElfK~ITg~~~~es~gqlv~lDleT-LE~~WH~vvkrPqC~-~~ 335 (637)
T TIGR03693 282 AGKAMLANIIVFELFKAAADDEHLEKKNQFFLLDLAT-LEGGWHAFIKHPDAS-CE 335 (637)
T ss_pred HHHHHHHHHHHHHHHHHHhccCccccCCcEEEEEccc-cccccccCCCCCCCC-CC
Confidence 367999999999999999975332 22 355555332 222222345788887 76
No 40
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.0081 Score=61.95 Aligned_cols=28 Identities=50% Similarity=0.930 Sum_probs=26.8
Q ss_pred ccCCCChHHHHHHHHHHHHHHHHhCCCC
Q 023706 69 SFDPDDPEHMQWVYSEAVKRAELFGIPG 96 (278)
Q Consensus 69 ~FdkDd~~hi~fI~aaanlRA~~y~I~~ 96 (278)
.||..|+.|+.||+|||||||.+|||++
T Consensus 715 ~Fd~n~~~hl~fv~Aaa~l~a~~~gi~~ 742 (1013)
T KOG2012|consen 715 EFDVNDPLHLNFVQAAANLRAEVYGIPG 742 (1013)
T ss_pred eecCCCchhHHHHHHHHHHHHHhcCCCc
Confidence 4999999999999999999999999997
No 41
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=94.77 E-value=0.051 Score=47.39 Aligned_cols=62 Identities=23% Similarity=0.251 Sum_probs=42.4
Q ss_pred HHHHHHHhCCCCccchhhhhhhccccccccchhhhHHHHHHHHHHHHHhcCCCCCcceEEEecC
Q 023706 85 AVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGV 148 (278)
Q Consensus 85 anlRA~~y~I~~~~~~~~k~iag~IIPAIaTT~AiVagl~~~E~~K~l~g~~~~~~~~~~~~~~ 148 (278)
-|..|+..+||...- .+.+..|.+.- .-++++++|++|+.|++|+|+|.++.+++++.|++.
T Consensus 130 ln~~c~~~~ip~i~~-~~~G~~G~v~~-~~p~~~~~~~~~~~e~~k~l~~~~~~~~~~~~~d~~ 191 (198)
T cd01485 130 VNDVCRKHHIPFISC-ATYGLIGYAFF-DFPIAAFLGGVVAQEAIKSISGKFTPLNNLYIYDGF 191 (198)
T ss_pred HHHHHHHcCCCEEEE-EeecCEEEEEE-chhHHHHHHHHHHHHHHHHHhCCCCccCcEEEEECc
Confidence 455677788875442 12333343332 227889999999999999999987777777777754
No 42
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=94.69 E-value=0.046 Score=47.65 Aligned_cols=37 Identities=19% Similarity=0.409 Sum_probs=31.9
Q ss_pred ccchhhhHHHHHHHHHHHHHhcCCCCCcceEEEecCC
Q 023706 113 IASTNAIISAACALETLKIASGCSKTLSNYLTYNGVA 149 (278)
Q Consensus 113 IaTT~AiVagl~~~E~~K~l~g~~~~~~~~~~~~~~~ 149 (278)
++++++++|++++.|++|+++|.+..+.+++.+++..
T Consensus 155 ~~p~~~~~~~~~~~e~~k~~~~~~~~l~~~~~~d~~~ 191 (197)
T cd01492 155 LAPVAAVVGGILAQDVINALSKRESPLNNFFVFDGET 191 (197)
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCCccCcEEEEECCC
Confidence 7888899999999999999999877777777777654
No 43
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=94.68 E-value=0.045 Score=53.49 Aligned_cols=30 Identities=40% Similarity=0.764 Sum_probs=26.7
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhCCCCccc
Q 023706 70 FDPDDPEHMQWVYSEAVKRAELFGIPGVTY 99 (278)
Q Consensus 70 FdkDd~~hi~fI~aaanlRA~~y~I~~~~~ 99 (278)
||.+|+.|++||.++|++||+.|||+.-++
T Consensus 250 fd~~~~~h~~fv~~~a~l~a~~~~~~~FeK 279 (435)
T cd01490 250 FDVNNPLHLDFVLAAANLYAEVYGIPGFEK 279 (435)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 788899999999999999999999986443
No 44
>PRK14851 hypothetical protein; Provisional
Probab=93.34 E-value=0.2 Score=51.78 Aligned_cols=29 Identities=17% Similarity=0.315 Sum_probs=26.4
Q ss_pred CEEeeecCcceEEEEEcCCCCCcccccCCC
Q 023706 1 MVDGGTEGFKGHARVIIPGVTPCFECTIWL 30 (278)
Q Consensus 1 LIe~Gt~G~~G~v~vi~p~~t~Cy~C~~~~ 30 (278)
+|.+|+.|+.|++.++.|+ +.||+|.+..
T Consensus 163 ~i~~g~~G~~g~~~~~~p~-~~~~~~~~~~ 191 (679)
T PRK14851 163 VITAGPLGYSSAMLVFTPQ-GMGFDDYFNI 191 (679)
T ss_pred EEEeecccccceEEEEcCC-CCCHhHhccC
Confidence 5899999999999999997 8999999874
No 45
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=91.93 E-value=0.27 Score=47.97 Aligned_cols=37 Identities=16% Similarity=0.337 Sum_probs=33.4
Q ss_pred cchhhhHHHHHHHHHHHHHhcCCCCCcceEEEecCCC
Q 023706 114 ASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAG 150 (278)
Q Consensus 114 aTT~AiVagl~~~E~~K~l~g~~~~~~~~~~~~~~~~ 150 (278)
-+++|+++|+++.|++|+++....++.|.++|+|...
T Consensus 384 ~~~~~~~gg~~aqE~iK~~t~q~vp~~n~~i~dg~~~ 420 (425)
T cd01493 384 HNISAFMGGIAAQEVIKLITKQYVPIDNTFIFDGIRS 420 (425)
T ss_pred chHHHHHhHHHHHHHHHHHhccccccCCceEEecccc
Confidence 7788999999999999999998888899999998653
No 46
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=86.58 E-value=0.91 Score=38.68 Aligned_cols=20 Identities=25% Similarity=0.109 Sum_probs=17.3
Q ss_pred cccccchhhhHHHHHHHHHH
Q 023706 110 IPAIASTNAIISAACALETL 129 (278)
Q Consensus 110 IPAIaTT~AiVagl~~~E~~ 129 (278)
.++++++.+++|++|+.|++
T Consensus 155 ~g~~~~~~~~~~~~~~~e~~ 174 (174)
T cd01487 155 LGLMAPRVNICAAHQANLVL 174 (174)
T ss_pred cCccccHHHHHHHHHHHhhC
Confidence 35788999999999999974
No 47
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=84.77 E-value=0.67 Score=34.61 Aligned_cols=60 Identities=23% Similarity=0.227 Sum_probs=32.0
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hccccccee
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 240 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~~~~~ 240 (278)
..|++++++.|+.+|.+.+.+++ ++... ...||... ...+.-...-.++|+++ +++| +.+
T Consensus 15 ~~Rie~~~~~t~~~L~~kI~~~l--~~~~~-----~~~L~~~~--~~~~~l~s~~~~tl~~lglkHG--dml 75 (80)
T PF11543_consen 15 MKRIEVSPSSTLSDLKEKISEQL--SIPDS-----SQSLSKDR--NNKEELKSSDSKTLSSLGLKHG--DML 75 (80)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHS-----TT-----T---BSSG--GGGGCSSS-TT-CCCCT---TT---EE
T ss_pred CEEEEcCCcccHHHHHHHHHHHc--CCCCc-----ceEEEecC--CCCcccccCCcCCHHHcCCCCc--cEE
Confidence 46888888899999999999987 43322 33444321 11111111347899999 9999 566
No 48
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=83.72 E-value=1.6 Score=38.14 Aligned_cols=23 Identities=22% Similarity=0.143 Sum_probs=20.2
Q ss_pred cccccchhhhHHHHHHHHHHHHH
Q 023706 110 IPAIASTNAIISAACALETLKIA 132 (278)
Q Consensus 110 IPAIaTT~AiVagl~~~E~~K~l 132 (278)
.|.+++.++++|++|++|++|++
T Consensus 178 ~g~~~p~v~~~a~~qa~~~l~~~ 200 (200)
T TIGR02354 178 LGLMAPRVQICAAHQANLVLELI 200 (200)
T ss_pred CCCchhHHHHHHHHHHHHHHHhC
Confidence 35688999999999999999985
No 49
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=81.74 E-value=1.3 Score=43.28 Aligned_cols=37 Identities=22% Similarity=0.385 Sum_probs=31.7
Q ss_pred ccchhhhHHHHHHHHHHHHHhcCCCCCcceEEEecCC
Q 023706 113 IASTNAIISAACALETLKIASGCSKTLSNYLTYNGVA 149 (278)
Q Consensus 113 IaTT~AiVagl~~~E~~K~l~g~~~~~~~~~~~~~~~ 149 (278)
+-+..|.|+|.++.|++|+++....+++|.++|+|-.
T Consensus 479 lH~VsAfiGGiaaQEvIKLiTkQyvPidNTFIfnGi~ 515 (523)
T KOG2016|consen 479 LHVVSAFIGGIAAQEVIKLITKQYVPIDNTFIFNGIT 515 (523)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhceecccceeEecccc
Confidence 4456689999999999999998877789999998765
No 50
>PRK07877 hypothetical protein; Provisional
Probab=76.95 E-value=5.1 Score=41.83 Aligned_cols=27 Identities=30% Similarity=0.268 Sum_probs=24.0
Q ss_pred cccccchhhhHHHHHHHHHHHHHhcCC
Q 023706 110 IPAIASTNAIISAACALETLKIASGCS 136 (278)
Q Consensus 110 IPAIaTT~AiVagl~~~E~~K~l~g~~ 136 (278)
-|.+++..++-||+++-++.|++.|..
T Consensus 299 ~pql~~~~~~~~~~~~~~~~~i~l~~~ 325 (722)
T PRK07877 299 WPQLASDVVLGAAAVAEAVRRIGLGEP 325 (722)
T ss_pred CCchHHHHHhhHHHHHHHHHHHHcCCc
Confidence 489999999999999999999999864
No 51
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=64.91 E-value=19 Score=25.34 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=34.5
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hccccccee
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 240 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~~~~~ 240 (278)
...+.++++.+++.+++.+.++.++..+ ..-.|++.+ ..+ +.++++.++ +++| +.+
T Consensus 12 ~~~~~v~~~~~~~~l~~~~~~~~~i~~~------~~~~l~fdG-~~L------~~~~T~~~~~ied~--d~I 68 (72)
T PF11976_consen 12 EIKFKVKPTTTVSKLIEKYCEKKGIPPE------ESIRLIFDG-KRL------DPNDTPEDLGIEDG--DTI 68 (72)
T ss_dssp EEEEEEETTSCCHHHHHHHHHHHTTTT-------TTEEEEETT-EEE-------TTSCHHHHT-STT--EEE
T ss_pred EEEEEECCCCcHHHHHHHHHHhhCCCcc------ceEEEEECC-EEc------CCCCCHHHCCCCCC--CEE
Confidence 3566777789999999999998743331 222222211 122 346789999 9999 555
No 52
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=63.94 E-value=19 Score=25.21 Aligned_cols=52 Identities=6% Similarity=0.081 Sum_probs=33.0
Q ss_pred EEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 171 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 171 ~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
..++++++.|+.+|-+.+.++.++..+...+. |. . ..+++ +++|+++ +++|+
T Consensus 12 ~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~------~~-g-~~l~d------~~~L~~~~i~~g~ 64 (71)
T cd01812 12 HDLSISSQATFGDLKKMLAPVTGVEPRDQKLI------FK-G-KERDD------AETLDMSGVKDGS 64 (71)
T ss_pred EEEEECCCCcHHHHHHHHHHhhCCChHHeEEe------eC-C-cccCc------cCcHHHcCCCCCC
Confidence 34667778999999999998874333322232 22 1 22322 4678888 88884
No 53
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=60.31 E-value=24 Score=26.28 Aligned_cols=55 Identities=18% Similarity=0.222 Sum_probs=36.4
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hccccccee
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 240 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~~~~~ 240 (278)
...+++..+.|++.+.+.+.++. ++... ..+.+|.. ..+ ..+.++.++ +++| +.+
T Consensus 23 ~~~~~v~~~~~l~~l~~~y~~~~--gi~~~----~~rf~f~G--~~L------~~~~T~~~l~m~d~--d~I 78 (87)
T cd01763 23 EVFFKIKRSTPLKKLMEAYCQRQ--GLSMN----SVRFLFDG--QRI------RDNQTPDDLGMEDG--DEI 78 (87)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHh--CCCcc----ceEEEECC--eEC------CCCCCHHHcCCCCC--CEE
Confidence 45678888899999999999986 44321 22344421 122 235788999 9999 455
No 54
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=54.71 E-value=25 Score=25.37 Aligned_cols=59 Identities=15% Similarity=0.172 Sum_probs=36.7
Q ss_pred CccCCCcEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 164 CLVCGPGVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 164 C~vC~~~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
|...+....++++++.|+.+|-+.|....++..+...+.++.+ .+++ +++|+++ +++|+
T Consensus 3 ~~l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~--------~L~d------~~tL~~~~i~~g~ 62 (76)
T cd01800 3 WKLNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGI--------FIKD------SNSLAYYNLANGT 62 (76)
T ss_pred cccCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCE--------EcCC------CCcHHHcCCCCCC
Confidence 3334445668888889999999999988643333333333221 2222 3578888 88883
No 55
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=52.93 E-value=23 Score=25.28 Aligned_cols=52 Identities=19% Similarity=0.298 Sum_probs=32.8
Q ss_pred EEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hccc
Q 023706 171 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKV 235 (278)
Q Consensus 171 ~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~ 235 (278)
..+++++++|+.++-+.+.++.++..+...+.++.+ .+++ =.++|++. +++|
T Consensus 12 ~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk--------~L~D-----~~~~L~~~gi~~~ 64 (71)
T cd01796 12 FSLDVDPDLELENFKALCEAESGIPASQQQLIYNGR--------ELVD-----NKRLLALYGVKDG 64 (71)
T ss_pred EEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCe--------EccC-----CcccHHHcCCCCC
Confidence 457888889999999999998744433333333322 2222 12457777 8888
No 56
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=47.35 E-value=32 Score=24.61 Aligned_cols=36 Identities=8% Similarity=0.087 Sum_probs=21.6
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCC
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRG 205 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~ 205 (278)
..++.+.++.||.|+++...+++++.-+...+..++
T Consensus 8 r~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~ 43 (65)
T PF11470_consen 8 RFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNN 43 (65)
T ss_dssp EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETT
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECC
Confidence 456667778999999999999985443434444443
No 57
>smart00455 RBD Raf-like Ras-binding domain.
Probab=47.24 E-value=27 Score=25.25 Aligned_cols=34 Identities=9% Similarity=0.069 Sum_probs=26.8
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEe
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTY 203 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~ 203 (278)
...+.+.+.+|+.|.++.+.++++++.+...+..
T Consensus 11 ~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~ 44 (70)
T smart00455 11 RTVVKVRPGKTVRDALAKALKKRGLNPECCVVRL 44 (70)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEE
Confidence 4567888899999999999999976666555544
No 58
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=44.55 E-value=34 Score=22.88 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=19.7
Q ss_pred EEEEeCCCCCHHHHHHHHHcCccC
Q 023706 171 VLIELDTSVTLEKFINLLEEHPKL 194 (278)
Q Consensus 171 ~~i~i~~~~TL~~li~~l~~~~~~ 194 (278)
..++++++.|+.+|.+.+.+++++
T Consensus 12 ~~~~v~~~~tv~~lk~~i~~~~~~ 35 (64)
T smart00213 12 ITLEVKPSDTVSELKEKIAELTGI 35 (64)
T ss_pred EEEEECCCCcHHHHHHHHHHHHCC
Confidence 456778888999999999988743
No 59
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=42.12 E-value=48 Score=22.92 Aligned_cols=52 Identities=19% Similarity=0.317 Sum_probs=36.8
Q ss_pred EEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 171 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 171 ~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
..++++++.|+.+|-+.+.++.++..+...+.++++.| + -+++|.++ +++|+
T Consensus 8 ~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L--------~------d~~tL~~~~i~~~~ 60 (69)
T PF00240_consen 8 FTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKEL--------D------DDKTLSDYGIKDGS 60 (69)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEE--------S------TTSBTGGGTTSTTE
T ss_pred EEEEECCCCCHHHhhhhcccccccccccceeeeeeecc--------c------CcCcHHHcCCCCCC
Confidence 45677778999999999999886666655555554443 1 24577888 88883
No 60
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=41.54 E-value=38 Score=23.78 Aligned_cols=53 Identities=6% Similarity=0.212 Sum_probs=34.8
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
...++++++.|+.++-+.+.++.++..+... ++|.. ..+++ +++|++. +++||
T Consensus 10 ~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~------Li~~G--~~L~d------~~~l~~~~i~~~s 63 (70)
T cd01798 10 TFPVEVDPDTDIKQLKEVVAKRQGVPPDQLR------VIFAG--KELRN------TTTIQECDLGQQS 63 (70)
T ss_pred EEEEEECCCChHHHHHHHHHHHHCCCHHHeE------EEECC--eECCC------CCcHHHcCCCCCC
Confidence 5567888889999999999998743333322 33321 22333 3678888 88884
No 61
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=40.53 E-value=38 Score=25.08 Aligned_cols=68 Identities=13% Similarity=0.102 Sum_probs=38.7
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEe-eCCCchhhhhccccCCcHHHh-hcccccceeeeccccc
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYM-QAPPVLEEMTRSNLSLPLYDL-MDKVAKDILHVTGVTG 247 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~-~~~~~~~~~~~~~l~~~l~~l-v~~~~~~~~~~~~~~~ 247 (278)
+....++.++|+.+|-..|...+|...+...|.. |. ..+....+ -..=.++|..+ +++| .+| .
T Consensus 15 ~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l-----~~~~~~~~~~~--~~dd~~~L~~y~~~dg--~~i------~ 79 (87)
T PF14560_consen 15 SVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQL-----KSDKDDSKIEE--LDDDDATLGSYGIKDG--MRI------H 79 (87)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEE-----E-TSSSSEEEE--SSGSSSBCCHHT-STT--EEE------E
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEE-----EecCCCccccc--cCCCccEeecCCCCCC--CEE------E
Confidence 5667788899999999999998844333222221 10 11110000 01235788888 9999 677 6
Q ss_pred cccCC
Q 023706 248 QSDKK 252 (278)
Q Consensus 248 v~d~~ 252 (278)
|.|..
T Consensus 80 V~D~~ 84 (87)
T PF14560_consen 80 VVDTN 84 (87)
T ss_dssp EEE-T
T ss_pred EEeCC
Confidence 66643
No 62
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=40.48 E-value=46 Score=20.75 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=18.5
Q ss_pred EEEEeCCCCCHHHHHHHHHcCcc
Q 023706 171 VLIELDTSVTLEKFINLLEEHPK 193 (278)
Q Consensus 171 ~~i~i~~~~TL~~li~~l~~~~~ 193 (278)
..+.++.+.|++++++.+.++++
T Consensus 10 ~~~~~~~~~tv~~l~~~i~~~~~ 32 (69)
T cd00196 10 VELLVPSGTTVADLKEKLAKKLG 32 (69)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHC
Confidence 44566667899999999999973
No 63
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=38.85 E-value=49 Score=23.55 Aligned_cols=53 Identities=15% Similarity=0.233 Sum_probs=34.4
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
...++++++.|+.++-+.+.++.++..+... ++|.. ..+++ +++|++. +++++
T Consensus 12 ~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~------L~~~G--~~L~d------~~~L~~~~i~~~~ 65 (74)
T cd01807 12 ECSLQVSEKESVSTLKKLVSEHLNVPEEQQR------LLFKG--KALAD------DKRLSDYSIGPNA 65 (74)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCCCHHHeE------EEECC--EECCC------CCCHHHCCCCCCC
Confidence 3457888889999999999998743333323 33321 22333 3678888 88884
No 64
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=38.38 E-value=48 Score=23.61 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=33.0
Q ss_pred EEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 171 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 171 ~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
..++++++.|+.++-+.+.++.++..+.. +++|.. +.+++ +++|++. +++++
T Consensus 11 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q------~Li~~G--k~L~D------~~tL~~~~i~~~~ 63 (74)
T cd01793 11 HTLEVTGQETVSDIKAHVAGLEGIDVEDQ------VLLLAG--VPLED------DATLGQCGVEELC 63 (74)
T ss_pred EEEEECCcCcHHHHHHHHHhhhCCCHHHE------EEEECC--eECCC------CCCHHHcCCCCCC
Confidence 45778888999999999998864333322 233321 22333 3677887 77773
No 65
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=38.17 E-value=26 Score=34.35 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=22.2
Q ss_pred CEEeeecCcceEEEEEcCCCCCcccccC
Q 023706 1 MVDGGTEGFKGHARVIIPGVTPCFECTI 28 (278)
Q Consensus 1 LIe~Gt~G~~G~v~vi~p~~t~Cy~C~~ 28 (278)
||.+++.|+.|++++..|. ..+.++.+
T Consensus 140 lI~~~s~G~~G~v~v~~~~-h~i~et~p 166 (425)
T cd01493 140 LLYVRSYGLYGYIRIQLKE-HTIVESHP 166 (425)
T ss_pred EEEEecccCEEEEEEEECC-eEEEECCC
Confidence 6899999999999999984 44777664
No 66
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=37.67 E-value=43 Score=26.59 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=31.0
Q ss_pred EEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeC
Q 023706 172 LIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQA 212 (278)
Q Consensus 172 ~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~ 212 (278)
.+.|+..+|-.|+|+.+.+|| .++..+++.+.--||.-.
T Consensus 39 ~VrVsS~~tt~eVI~~LLeKF--k~d~~~~s~p~FALYevh 77 (112)
T cd01782 39 CIRVSSTATTRDVIDTLSEKF--RPDMRMLSNPTYSLYEVH 77 (112)
T ss_pred EEEEecCCCHHHHHHHHHHHh--cccccccCCcceEEEEEe
Confidence 356666899999999999998 666667777788899753
No 67
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=37.66 E-value=42 Score=24.23 Aligned_cols=33 Identities=9% Similarity=0.144 Sum_probs=23.6
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEE
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVT 202 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~ 202 (278)
...+.+.+.+|++|+++.+.+++++..+...+.
T Consensus 12 ~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~ 44 (71)
T PF02196_consen 12 RTVVQVRPGMTIRDALSKACKKRGLNPECCDVR 44 (71)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEE
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEE
Confidence 566788888999999999999986555544443
No 68
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=35.80 E-value=52 Score=23.46 Aligned_cols=53 Identities=13% Similarity=0.288 Sum_probs=33.8
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
...++++++.|+.++-+.+.++.++..+...+.++. ..++| +++|++. +++++
T Consensus 10 ~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G--------~~L~D------~~tL~~~~i~~~~ 63 (74)
T cd01810 10 SSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEG--------RPMED------EHPLGEYGLKPGC 63 (74)
T ss_pred EEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECC--------EECCC------CCCHHHcCCCCCC
Confidence 345788888999999999998864333333333222 22333 3578888 77773
No 69
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=34.57 E-value=63 Score=23.07 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=20.0
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCcc
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPK 193 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~ 193 (278)
...++++++.|+.++-+.+.++.+
T Consensus 10 ~~~l~v~~~~TV~~lK~~I~~~~g 33 (70)
T cd01794 10 DVKLSVSSKDTVGQLKKQLQAAEG 33 (70)
T ss_pred EEEEEECCcChHHHHHHHHHHHhC
Confidence 556788888999999999988763
No 70
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=33.45 E-value=86 Score=21.90 Aligned_cols=53 Identities=13% Similarity=0.298 Sum_probs=33.5
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
...++++++.|+++|-+.+.++.++..+...+.++. ..+++ +++|+++ +++|+
T Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g--------~~L~d------~~tl~~~~i~~g~ 65 (76)
T cd01806 12 EIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSG--------KQMND------DKTAADYKLEGGS 65 (76)
T ss_pred EEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECC--------eEccC------CCCHHHcCCCCCC
Confidence 445778888999999999998864333322232222 22222 3578888 88883
No 71
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=33.16 E-value=76 Score=22.44 Aligned_cols=53 Identities=21% Similarity=0.298 Sum_probs=33.6
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccC--cceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKL--QLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~--~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
...++++++.|+.+|-+.+.++.+. ..+.. +++|.. ..++| +++|++. +++|+
T Consensus 12 ~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q------~L~~~G--~~L~d------~~~L~~~~i~~~~ 67 (77)
T cd01805 12 TFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQ------KLIYSG--KILKD------DTTLEEYKIDEKD 67 (77)
T ss_pred EEEEEECCCCcHHHHHHHHHHhhCCCCChhHe------EEEECC--EEccC------CCCHHHcCCCCCC
Confidence 3457777889999999999998733 22222 333321 23333 3578888 88884
No 72
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=32.61 E-value=68 Score=22.57 Aligned_cols=51 Identities=12% Similarity=0.184 Sum_probs=32.5
Q ss_pred EEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 172 LIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 172 ~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
.++++++.|+.+|-+.+.++.+...+.. +++|. .+.++| +++|++. +++|+
T Consensus 13 ~l~v~~~~TV~~lK~~I~~~~~i~~~~~------~Li~~--Gk~L~d------~~tL~~~~i~~~s 64 (71)
T cd01808 13 EIEIAEDASVKDFKEAVSKKFKANQEQL------VLIFA--GKILKD------TDTLTQHNIKDGL 64 (71)
T ss_pred EEEECCCChHHHHHHHHHHHhCCCHHHE------EEEEC--CeEcCC------CCcHHHcCCCCCC
Confidence 5788888999999999998863222211 23442 123333 3578888 88874
No 73
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=31.29 E-value=78 Score=21.87 Aligned_cols=52 Identities=12% Similarity=0.250 Sum_probs=32.6
Q ss_pred EEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 171 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 171 ~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
..+.++++.|+.+|-+.+.++.+...+.. +++|. . ..+++ +++|++. +++|+
T Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q------~L~~~-g-~~L~d------~~~L~~~~i~~~~ 65 (72)
T cd01809 13 HTFTVEEEITVLDLKEKIAEEVGIPVEQQ------RLIYS-G-RVLKD------DETLSEYKVEDGH 65 (72)
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCHHHe------EEEEC-C-EECCC------cCcHHHCCCCCCC
Confidence 45777788999999999998863322222 23332 1 12222 3578888 88884
No 74
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=30.52 E-value=88 Score=22.55 Aligned_cols=54 Identities=11% Similarity=0.083 Sum_probs=34.4
Q ss_pred EEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEee-CCCchhhhhccccCCcHHHh-hcccc
Q 023706 171 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQ-APPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 171 ~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~-~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
..++++++.|+.+|-+.+.++.++..+ ..++||.. ....++| +++|+++ +++|+
T Consensus 12 ~~v~v~~~~Tv~~lK~~i~~~tgvp~~------~QKLi~~~~~Gk~l~D------~~~L~~~~i~~g~ 67 (74)
T cd01813 12 YSVTTLSEDTVLDLKQFIKTLTGVLPE------RQKLLGLKVKGKPAED------DVKISALKLKPNT 67 (74)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCHH------HEEEEeecccCCcCCC------CcCHHHcCCCCCC
Confidence 346777889999999999998633322 23566621 1112222 4678888 88884
No 75
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=29.64 E-value=81 Score=22.76 Aligned_cols=53 Identities=11% Similarity=0.132 Sum_probs=33.8
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
...++++++.|+.+|-+.+.++.++..+... ++|. . +-++| +++|.+. +++|+
T Consensus 13 ~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qr------Li~~-G-k~L~D------~~tL~~ygi~~~s 66 (73)
T cd01791 13 KVRVKCNPDDTIGDLKKLIAAQTGTRPEKIV------LKKW-Y-TIFKD------HISLGDYEIHDGM 66 (73)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCChHHEE------EEeC-C-cCCCC------CCCHHHcCCCCCC
Confidence 3455777789999999999888644444333 3332 1 22332 3578888 88884
No 76
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=29.31 E-value=77 Score=23.07 Aligned_cols=32 Identities=6% Similarity=0.120 Sum_probs=24.3
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEE
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASV 201 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i 201 (278)
...+.+.+.+|++|+++.+.++.+++.+...+
T Consensus 11 ~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v 42 (72)
T cd01760 11 RTVVPVRPGMSVRDVLAKACKKRGLNPECCDV 42 (72)
T ss_pred eEEEEECCCCCHHHHHHHHHHHcCCCHHHEEE
Confidence 45677888999999999999998555443333
No 77
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=29.22 E-value=71 Score=23.64 Aligned_cols=64 Identities=14% Similarity=0.065 Sum_probs=37.8
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCC---chhhhhccccCCcHHHh-hcccccceeeeccc
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPP---VLEEMTRSNLSLPLYDL-MDKVAKDILHVTGV 245 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~---~~~~~~~~~l~~~l~~l-v~~~~~~~~~~~~~ 245 (278)
+...++++.+|+.+|-+.+...+ ++.+..... .+|..... .+++ =.++|..+ +++| ..+
T Consensus 14 ~~ekr~~~~~Tv~~lK~kl~~~~--G~~~~~mrL---~l~~~~~~~~~~l~~-----d~~~L~~y~~~dg--~~I----- 76 (84)
T cd01789 14 SFEKKYSRGLTIAELKKKLELVV--GTPASSMRL---QLFDGDDKLVSKLDD-----DDALLGSYPVDDG--CRI----- 76 (84)
T ss_pred eeeEecCCCCcHHHHHHHHHHHH--CCCccceEE---EEEcCCCCeEeecCC-----CccEeeeccCCCC--CEE-----
Confidence 45566778899999999998887 444333211 12322110 1221 23577888 8999 466
Q ss_pred cccccC
Q 023706 246 TGQSDK 251 (278)
Q Consensus 246 ~~v~d~ 251 (278)
.|.|.
T Consensus 77 -hVvD~ 81 (84)
T cd01789 77 -HVIDV 81 (84)
T ss_pred -EEEeC
Confidence 56654
No 78
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=29.00 E-value=1e+02 Score=22.34 Aligned_cols=27 Identities=4% Similarity=0.050 Sum_probs=21.6
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHcCccC
Q 023706 168 GPGVLIELDTSVTLEKFINLLEEHPKL 194 (278)
Q Consensus 168 ~~~~~i~i~~~~TL~~li~~l~~~~~~ 194 (278)
+....+++++++|+.++-+.+.++.+.
T Consensus 12 ~~t~~l~v~~~~TV~~lK~kI~~~~gi 38 (75)
T cd01799 12 TVTIWLTVRPDMTVAQLKDKVFLDYGF 38 (75)
T ss_pred CCeEEEEECCCCcHHHHHHHHHHHHCc
Confidence 334568888899999999999988743
No 79
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=28.30 E-value=85 Score=21.94 Aligned_cols=53 Identities=19% Similarity=0.347 Sum_probs=33.3
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
...++++++.|+.+|-+.+.++.++..+...+.+++ ..++| +++|++. +++|+
T Consensus 12 ~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g--------~~L~d------~~~L~~~~i~~~~ 65 (76)
T cd01803 12 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG--------KQLED------GRTLSDYNIQKES 65 (76)
T ss_pred EEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECC--------EECCC------CCcHHHcCCCCCC
Confidence 345778888999999999999874333333333222 12332 3578888 88873
No 80
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=27.53 E-value=95 Score=24.06 Aligned_cols=53 Identities=11% Similarity=0.132 Sum_probs=33.7
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
...++++++.|+.+|-+.|.++.++..+...+.++. ..++| +++|++. +++++
T Consensus 39 ~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~G--------k~L~D------~~tL~dy~I~~~s 92 (103)
T cd01802 39 CFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNN--------MELED------EYCLNDYNISEGC 92 (103)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECC--------EECCC------CCcHHHcCCCCCC
Confidence 355788888999999999998864333323333222 22333 3577787 77773
No 81
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=26.13 E-value=81 Score=22.87 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=32.2
Q ss_pred EEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 171 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 171 ~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
..++++++.|+.+|-+.+.++.++..+.. +++|. . +.++| . +|.+. +++|+
T Consensus 14 ~~l~v~~~~TV~~LK~~I~~~~~~~~~~q------rL~~~-G-k~L~d------~-~L~~~gi~~~~ 65 (78)
T cd01804 14 FDLSVPPDETVEGLKKRISQRLKVPKERL------ALLHR-E-TRLSS------G-KLQDLGLGDGS 65 (78)
T ss_pred EEEEECCcCHHHHHHHHHHHHhCCChHHE------EEEEC-C-cCCCC------C-cHHHcCCCCCC
Confidence 44788888999999999988864333322 23332 1 23333 2 58888 88884
No 82
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=25.17 E-value=42 Score=31.92 Aligned_cols=48 Identities=19% Similarity=0.326 Sum_probs=36.6
Q ss_pred CcceEEEEEcCCCCCcccccCCCCCCCCCCCcccccCCCCCcchhhhhhhh
Q 023706 8 GFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHL 58 (278)
Q Consensus 8 G~~G~v~vi~p~~t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~HcI~wa~~ 58 (278)
...|.|++..-..|+|..-.- |....+|+-++.-+|.+|+|-|+.-|.
T Consensus 367 SsDgtvkvW~~KtteC~~Tfk---~~~~d~~vnsv~~~PKnpeh~iVCNrs 414 (508)
T KOG0275|consen 367 SSDGTVKVWHGKTTECLSTFK---PLGTDYPVNSVILLPKNPEHFIVCNRS 414 (508)
T ss_pred cCCccEEEecCcchhhhhhcc---CCCCcccceeEEEcCCCCceEEEEcCC
Confidence 356778876656678876543 556789999999999999999887554
No 83
>PTZ00044 ubiquitin; Provisional
Probab=23.74 E-value=1.2e+02 Score=21.41 Aligned_cols=51 Identities=18% Similarity=0.300 Sum_probs=31.6
Q ss_pred EEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hccc
Q 023706 171 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKV 235 (278)
Q Consensus 171 ~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~ 235 (278)
..++++++.|+.++-+.+.++.+...+...+.++.+ .+++ .++|++. ++++
T Consensus 13 ~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~--------~L~d------~~~l~~~~i~~~ 64 (76)
T PTZ00044 13 QSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGK--------QMSD------DLKLSDYKVVPG 64 (76)
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCE--------EccC------CCcHHHcCCCCC
Confidence 456777889999999999998743333223333322 2222 3457777 7777
No 84
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=22.96 E-value=1.1e+02 Score=20.61 Aligned_cols=23 Identities=9% Similarity=0.125 Sum_probs=18.8
Q ss_pred EEEEeCCCCCHHHHHHHHHcCcc
Q 023706 171 VLIELDTSVTLEKFINLLEEHPK 193 (278)
Q Consensus 171 ~~i~i~~~~TL~~li~~l~~~~~ 193 (278)
..+.++++.|+.+|-+.+.++.+
T Consensus 10 ~~~~~~~~~ti~~lK~~i~~~~~ 32 (69)
T cd01769 10 FELEVSPDDTVAELKAKIAAKEG 32 (69)
T ss_pred EEEEECCCChHHHHHHHHHHHHC
Confidence 45667778999999999999873
Done!