Query 023706
Match_columns 278
No_of_seqs 219 out of 1539
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 11:24:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023706.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023706hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y8q_B Anthracycline-, ubiquit 100.0 4.6E-55 1.6E-59 435.2 22.1 250 1-267 136-538 (640)
2 1tt5_B Ubiquitin-activating en 100.0 2.8E-53 9.6E-58 407.9 15.7 256 1-264 169-433 (434)
3 3cmm_A Ubiquitin-activating en 100.0 1.2E-49 4E-54 414.2 17.7 165 67-236 809-981 (1015)
4 2nvu_B Maltose binding protein 100.0 8.6E-49 3E-53 401.7 21.8 256 1-264 540-804 (805)
5 1z7l_A Ubiquitin-activating en 99.9 2E-24 6.9E-29 195.8 3.9 44 67-110 231-276 (276)
6 1y8x_B Ubiquitin-activating en 99.6 7.5E-17 2.5E-21 124.3 4.5 91 166-264 1-97 (98)
7 3h8v_A Ubiquitin-like modifier 99.4 1.1E-13 3.6E-18 126.5 7.9 104 1-169 165-273 (292)
8 1y8q_A Ubiquitin-like 1 activa 99.4 5.1E-13 1.7E-17 124.7 9.7 154 1-158 153-343 (346)
9 1jw9_B Molybdopterin biosynthe 99.2 2.4E-11 8.3E-16 108.2 9.3 98 1-168 149-248 (249)
10 1zud_1 Adenylyltransferase THI 99.2 3.5E-11 1.2E-15 107.3 9.0 99 1-169 146-245 (251)
11 3h5n_A MCCB protein; ubiquitin 99.2 2.9E-11 9.8E-16 113.1 8.7 58 111-169 292-351 (353)
12 3rui_A Ubiquitin-like modifier 99.1 3.8E-10 1.3E-14 104.8 9.7 57 112-169 219-284 (340)
13 4gsl_A Ubiquitin-like modifier 98.9 4.1E-09 1.4E-13 104.3 9.7 57 112-169 511-576 (615)
14 3vh1_A Ubiquitin-like modifier 98.6 7.1E-08 2.4E-12 95.4 9.3 57 112-169 512-577 (598)
15 3cmm_A Ubiquitin-activating en 97.8 2.9E-05 1E-09 81.3 8.1 41 112-152 349-389 (1015)
16 3onh_A Ubiquitin-activating en 97.7 3.7E-05 1.3E-09 61.1 5.3 68 171-254 8-82 (127)
17 1tt5_A APPBP1, amyloid protein 97.5 2.7E-05 9.4E-10 76.3 2.7 48 1-53 152-199 (531)
18 1z7l_A Ubiquitin-activating en 96.9 0.00063 2.2E-08 61.3 4.6 31 66-96 135-165 (276)
19 1tt5_A APPBP1, amyloid protein 95.7 0.029 9.9E-07 54.8 8.6 39 112-150 486-524 (531)
20 2pjh_A Protein NPL4, nuclear p 76.2 0.68 2.3E-05 33.3 0.6 60 170-240 15-75 (80)
21 2kzr_A Ubiquitin thioesterase 69.1 4.4 0.00015 28.9 3.6 62 173-252 14-78 (86)
22 2bwf_A Ubiquitin-like protein 67.4 8.8 0.0003 26.1 4.8 53 170-236 15-68 (77)
23 4b6w_A Tubulin-specific chaper 58.0 12 0.00043 26.8 4.3 57 170-240 16-78 (86)
24 2kj6_A Tubulin folding cofacto 57.5 22 0.00075 26.2 5.6 57 170-240 28-90 (97)
25 1v5o_A 1700011N24RIK protein; 51.5 34 0.0012 24.9 5.9 53 170-235 23-76 (102)
26 3a4r_A Nfatc2-interacting prot 50.5 33 0.0011 24.0 5.4 54 171-240 21-75 (79)
27 2dzj_A Synaptic glycoprotein S 49.3 17 0.00057 26.2 3.7 53 172-236 26-81 (88)
28 1wju_A NEDD8 ultimate buster-1 48.6 28 0.00096 25.9 5.0 53 170-236 31-84 (100)
29 1wf9_A NPL4 family protein; be 46.1 19 0.00066 26.7 3.8 23 171-193 19-42 (107)
30 2hj8_A Interferon-induced 17 k 46.1 30 0.001 24.4 4.7 53 170-236 16-69 (88)
31 2kjr_A CG11242; UBL, ubiquitin 45.4 44 0.0015 24.3 5.6 58 170-240 29-90 (95)
32 1wjn_A Tubulin-folding protein 42.8 60 0.002 23.3 6.0 63 170-251 24-92 (97)
33 2al3_A TUG long isoform; TUG U 42.4 25 0.00087 25.8 3.7 36 170-205 21-56 (90)
34 3b08_A Polyubiquitin-C, ubiqui 42.2 63 0.0022 24.6 6.5 53 170-236 12-65 (152)
35 3a9j_A Ubiquitin; protein comp 41.2 26 0.00087 23.4 3.5 53 170-236 12-65 (76)
36 4dbg_A Ranbp-type and C3HC4-ty 40.8 36 0.0012 25.6 4.5 36 170-205 38-73 (105)
37 3n3k_B Ubiquitin; hydrolase, p 40.3 25 0.00086 24.1 3.4 51 171-235 16-67 (85)
38 1ndd_A NEDD8, protein (ubiquit 39.7 28 0.00095 23.2 3.5 53 170-236 12-65 (76)
39 3goe_A DNA repair protein RAD6 38.6 23 0.00079 25.5 2.9 55 171-240 22-77 (82)
40 2io0_B Small ubiquitin-related 38.6 28 0.00096 25.2 3.5 55 170-240 17-72 (91)
41 2dzi_A Ubiquitin-like protein 38.1 33 0.0011 23.2 3.8 53 170-236 19-72 (81)
42 3mtn_B UBA80, ubcep1, ubiquiti 37.9 31 0.0011 23.6 3.6 53 170-236 15-68 (85)
43 2d07_B Ubiquitin-like protein 37.7 32 0.0011 24.9 3.7 55 170-240 29-84 (93)
44 1v6e_A Cytoskeleton-associated 36.7 29 0.001 25.0 3.4 58 170-240 20-82 (95)
45 2io1_B Small ubiquitin-related 36.6 31 0.001 25.2 3.5 55 170-240 19-74 (94)
46 3u30_A Ubiquitin, linear DI-ub 36.2 94 0.0032 24.6 6.8 53 170-236 32-85 (172)
47 3phx_B Ubiquitin-like protein 36.0 37 0.0013 23.1 3.7 53 170-236 16-69 (79)
48 1wh3_A 59 kDa 2'-5'-oligoadeny 35.4 40 0.0014 23.3 3.9 53 170-236 19-72 (87)
49 3v6c_B Ubiquitin; structural g 34.8 36 0.0012 24.0 3.6 53 170-236 29-82 (91)
50 3dbh_I NEDD8; cell cycle, acti 34.5 32 0.0011 23.8 3.2 53 170-236 24-77 (88)
51 2kan_A Uncharacterized protein 34.2 52 0.0018 23.6 4.4 52 171-236 27-80 (94)
52 1wxv_A BAG-family molecular ch 34.2 1E+02 0.0036 21.5 6.1 53 171-236 19-77 (92)
53 3k9o_B Ubiquitin, UBB+1; E2-25 33.9 36 0.0012 24.1 3.5 52 171-236 14-66 (96)
54 2klc_A Ubiquilin-1; ubiquitin- 33.5 52 0.0018 23.9 4.4 52 171-236 37-89 (101)
55 2k8h_A Small ubiquitin protein 33.5 50 0.0017 24.9 4.3 55 170-240 38-93 (110)
56 1yx5_B Ubiquitin; proteasome, 33.2 43 0.0015 24.0 3.8 52 171-236 13-65 (98)
57 2jxx_A Nfatc2-interacting prot 33.2 76 0.0026 23.4 5.2 54 171-240 39-93 (97)
58 4fbj_B NEDD8; effector-HOST ta 33.0 38 0.0013 23.9 3.4 52 171-236 13-65 (88)
59 2daj_A KIAA0977 protein, COBL- 32.3 43 0.0015 24.5 3.5 53 172-235 24-77 (91)
60 1sif_A Ubiquitin; hydrophobic 32.0 40 0.0014 23.7 3.4 52 171-236 22-74 (88)
61 4hcn_B Polyubiquitin, ubiquiti 31.8 40 0.0014 24.3 3.4 52 171-236 35-87 (98)
62 2fnj_B Transcription elongatio 31.5 1.7E+02 0.0059 22.2 7.3 27 171-197 14-40 (118)
63 2bps_A YUKD protein; ubiquitin 31.5 66 0.0022 23.0 4.4 57 170-240 18-78 (81)
64 1uh6_A Ubiquitin-like 5; beta- 31.0 40 0.0014 25.1 3.3 53 170-236 40-93 (100)
65 1j8c_A Ubiquitin-like protein 30.8 58 0.002 24.9 4.4 52 171-236 44-96 (125)
66 2lqo_A Putative glutaredoxin R 30.7 58 0.002 23.4 4.1 62 160-231 10-82 (92)
67 4dwf_A HLA-B-associated transc 30.7 39 0.0013 23.6 3.2 27 171-197 18-44 (90)
68 1wz0_A Ubiquitin-like protein 30.1 37 0.0013 25.3 3.0 55 170-240 36-91 (104)
69 2eke_C Ubiquitin-like protein 29.9 44 0.0015 25.1 3.4 55 170-240 42-97 (106)
70 2kd0_A LRR repeats and ubiquit 29.7 47 0.0016 23.3 3.4 52 171-236 24-76 (85)
71 2faz_A Ubiquitin-like containi 29.5 55 0.0019 22.0 3.7 51 172-236 17-69 (78)
72 3m62_B UV excision repair prot 28.7 52 0.0018 24.2 3.6 52 171-236 14-66 (106)
73 1wx7_A Ubiquilin 3; ubiquitin- 28.4 41 0.0014 24.6 3.0 50 172-235 30-80 (106)
74 4eew_A Large proline-rich prot 28.2 46 0.0016 23.1 3.2 27 171-197 30-56 (88)
75 2uyz_B Small ubiquitin-related 28.1 47 0.0016 22.5 3.2 52 171-236 16-68 (79)
76 2l7r_A Ubiquitin-like protein 27.7 53 0.0018 23.4 3.5 52 171-236 30-82 (93)
77 1yqb_A Ubiquilin 3; structural 27.0 48 0.0016 24.1 3.2 51 172-236 35-86 (100)
78 2daf_A FLJ35834 protein; hypot 26.5 68 0.0023 24.7 4.0 53 170-236 28-81 (118)
79 2kk8_A Uncharacterized protein 26.3 66 0.0022 22.5 3.7 53 170-236 22-76 (84)
80 3plu_A Ubiquitin-like modifier 26.0 59 0.002 23.9 3.4 53 170-236 33-86 (93)
81 3rt3_B Ubiquitin-like protein 25.7 1.6E+02 0.0053 22.7 6.3 70 171-262 15-87 (159)
82 1wy8_A NP95-like ring finger p 24.8 76 0.0026 21.9 3.8 52 171-236 21-74 (89)
83 3vdz_A Ubiquitin-40S ribosomal 24.1 71 0.0024 23.6 3.7 53 170-236 47-100 (111)
84 1ttn_A DC-UBP, dendritic cell- 22.9 85 0.0029 22.9 3.9 52 171-236 36-88 (106)
85 2dzm_A FAS-associated factor 1 22.9 86 0.0029 23.1 3.9 53 171-236 21-74 (100)
86 1wx8_A Riken cDNA 4931431F19; 22.7 49 0.0017 23.5 2.4 52 171-236 29-81 (96)
87 2wyq_A HHR23A, UV excision rep 22.6 98 0.0034 21.0 4.0 52 171-236 18-73 (85)
88 1t1h_A Gspef-atpub14, armadill 22.1 20 0.00069 24.4 0.2 32 161-192 43-75 (78)
89 1wyw_B Ubiquitin-like protein 21.7 71 0.0024 22.9 3.2 52 171-236 34-86 (97)
90 2ojr_A Ubiquitin; lanthide-bin 21.5 79 0.0027 23.2 3.5 53 170-236 47-100 (111)
91 2kdi_A Ubiquitin, vacuolar pro 20.8 84 0.0029 23.4 3.5 53 170-236 21-74 (114)
92 1wgd_A Homocysteine-responsive 20.5 1E+02 0.0036 21.6 3.9 22 171-192 22-43 (93)
93 1wm3_A Ubiquitin-like protein 20.4 91 0.0031 21.0 3.4 55 170-240 13-68 (72)
No 1
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Probab=100.00 E-value=4.6e-55 Score=435.17 Aligned_cols=250 Identities=27% Similarity=0.410 Sum_probs=208.2
Q ss_pred CEEeeecCcceEEEEEcCCCCCcccccCCCCCCCCCCCcccccCCCCCcchhhhhhhhh---------------------
Q 023706 1 MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLI--------------------- 59 (278)
Q Consensus 1 LIe~Gt~G~~G~v~vi~p~~t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~HcI~wa~~~--------------------- 59 (278)
||+||+.|+.||+++++|+.|+||+|.+. |+++++|+||++++|+.++|||+||+++
T Consensus 136 lI~~g~~G~~G~v~vi~p~~t~Cy~C~~~--p~~~~~p~Cti~~~p~~~~hci~~a~~~f~~lf~~~~~~~~~~~~~~~~ 213 (640)
T 1y8q_B 136 LIESGTAGYLGQVTTIKKGVTECYECHPK--PTQRTFPGATIRNTPSEPIHCIVWAKYLFNQLFGEEDADQEVSPDRADP 213 (640)
T ss_dssp EEEEEEETTEEEEEEECTTTSCCTTSSCC--CCCCCCCTTTTTSCCCSHHHHHHHHHHHHHHHHSCCCGGGCCSCCTTCT
T ss_pred EEEEEEecccceEEEECCCCCCCcccCCC--CCCcccceeeecCCCCchHHHHHHHHHHHHHHhCCcchhhhhcccccch
Confidence 58999999999999999999999999864 6778999999999999999999999985
Q ss_pred ----------------------------h------------------------------hccc-----------------
Q 023706 60 ----------------------------K------------------------------WDEV----------------- 64 (278)
Q Consensus 60 ----------------------------~------------------------------~~~~----------------- 64 (278)
. |..+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~f~k~F~~~I~~Ll~~~~fW~~kr~P~pl~fd~~~~~~~~ 293 (640)
T 1y8q_B 214 EAAWEPTEAEARARASNEDGDIKRISTKEWAKSTGYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQGEE 293 (640)
T ss_dssp TSCCC---------------------CHHHHHHTTSCHHHHHHHHHTHHHHHHTTCGGGCSSSCCCCCCCHHHHHHC---
T ss_pred hhhhhhhhhhhhhhhhhhhhHHHHHhhhhHHHhHhHHHHHHHHHHHhhHHHHHHhCcccccCCCCCCCcccCcccccccc
Confidence 1 2110
Q ss_pred ---------------------------------------------CCCCccCCCChHHHHHHHHHHHHHHHHhCCCCccc
Q 023706 65 ---------------------------------------------HSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTY 99 (278)
Q Consensus 65 ---------------------------------------------~~~~~FdkDd~~hi~fI~aaanlRA~~y~I~~~~~ 99 (278)
..++.|||||++||+||+||||+||++|||+++++
T Consensus 294 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~FdKDDd~h~dFV~aaaNlRA~~y~I~~~~~ 373 (640)
T 1y8q_B 294 TNASDQQNEPQLGLKDQQVLDVKSYARLFSKSIETLRVHLAEKGDGAELIWDKDDPSAMDFVTSAANLRMHIFSMNMKSR 373 (640)
T ss_dssp -----------CCCGGGSCCCHHHHHHHHHHHHHHHHHHHHHTCTTCCCCCCTTCHHHHHHHHHHHHHHHHHTTCCCCCH
T ss_pred ccccccccccccCCChhhhcChhhhhhhHHHHHHHHHHHhhhcccCCCcccCCCCHHHHHHHHHHHHHHHHHcCCCcCCH
Confidence 12457999999999999999999999999999999
Q ss_pred hhhhhhhccccccccchhhhHHHHHHHHHHHHHhcCCCCCc-ceEEEe--cCCCceeeeeecccCCCCccCC-C---cEE
Q 023706 100 SLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS-NYLTYN--GVAGLHIKVTEFVKDKDCLVCG-P---GVL 172 (278)
Q Consensus 100 ~~~k~iag~IIPAIaTT~AiVagl~~~E~~K~l~g~~~~~~-~~~~~~--~~~~~~~~~~~~~~~p~C~vC~-~---~~~ 172 (278)
+++|+||||||||||||||+||||+++|++|++++..+..+ .|+.+. +...+.......+|+|+|++|+ . |++
T Consensus 374 ~~~K~iAG~IIPAIATTnAiVaGl~~lE~~Kvl~~~~~~~kn~f~n~a~~~~~~~~~~~~p~~p~~~c~vc~~~~~~~~~ 453 (640)
T 1y8q_B 374 FDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQCRTIFLNKQPNPRKKLLVPCALDPPNPNCYVCASKPEVTVR 453 (640)
T ss_dssp HHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHTTCGGGCEEEEECSSCCTTSEEEEEEECCCCCTTCTTTSSSCEEEEE
T ss_pred HHHHHHhCCcccchhhHHHHHHHHHHHHHHHHHhccHHhhhhhheeeccCCCCcEEeecccCCCCCCCcccCCccEEEEE
Confidence 99999999999999999999999999999999998654333 455432 2222444555568999999995 3 444
Q ss_pred EEeCCCCCHHHHHHHH-HcCccCcceeeEEEe---CCcEEEeeCCCchhhhhccccCCcHHHh-hcccccceeeeccccc
Q 023706 173 IELDTSVTLEKFINLL-EEHPKLQLAKASVTY---RGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDILHVTGVTG 247 (278)
Q Consensus 173 i~i~~~~TL~~li~~l-~~~~~~~l~~~~i~~---g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~~~~~~~~~~~~ 247 (278)
++++ ++||++|++++ +++| ++++++|+. |.++||.++.++.+ .||+++|++| +++| +++ .
T Consensus 454 ~~~~-~~TL~~li~~~~~~~~--~l~~~~is~~~~~~~~ly~~~~~~~~----~~l~~~l~el~v~~~--~~~------~ 518 (640)
T 1y8q_B 454 LNVH-KVTVLTLQDKIVKEKF--AMVAPDVQIEDGKGTILISSEEGETE----ANNHKKLSEFGIRNG--SRL------Q 518 (640)
T ss_dssp ECTT-TCBHHHHHHCCCCCCT--CCSSCEEEESSSSCCEEECSSSSSST----TGGGSBGGGGTCCTT--CEE------E
T ss_pred EeCC-CCcHHHHHHHHHHHhh--CCCCceEEEEcCCCcEEEeccchhhH----HhhhCcHHHhCccCC--cEE------E
Confidence 4433 79999999996 6555 899999999 88999987644433 4999999997 9999 799 9
Q ss_pred cccCCcceEEEEEEEEecCC
Q 023706 248 QSDKKTSCLRKLRVVFRGVD 267 (278)
Q Consensus 248 v~d~~~~~~~~l~~~~~~~~ 267 (278)
|+|..+++.+.|.+.|+++.
T Consensus 519 v~d~~~~~~~~i~~~~~~~~ 538 (640)
T 1y8q_B 519 ADDFLQDYTLLINILHSEDL 538 (640)
T ss_dssp EEETTTTEEEEEEEEECSCC
T ss_pred ecCCCccEEEEEEEEecCcc
Confidence 99999999999999997544
No 2
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Probab=100.00 E-value=2.8e-53 Score=407.89 Aligned_cols=256 Identities=43% Similarity=0.788 Sum_probs=224.3
Q ss_pred CEEeeecCcceEEEEEcCCCCCcccccCCCCCCCCCCCcccccCCCCCcchhhhhhhhhhhcccCCC---CccCCCChHH
Q 023706 1 MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSG---KSFDPDDPEH 77 (278)
Q Consensus 1 LIe~Gt~G~~G~v~vi~p~~t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~HcI~wa~~~~~~~~~~~---~~FdkDd~~h 77 (278)
||+||+.|+.||++++.|+.|+||+|.++..|+++.+|.||++++|+.|+|||+||+.+.|++.++. ..||+||++|
T Consensus 169 li~~~~~g~~G~v~v~~p~~t~Cy~C~~~~~p~~~~~p~Ct~~~~p~~~~h~i~~a~~i~~~~~~~~~~~~~~d~d~~~~ 248 (434)
T 1tt5_B 169 LIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEH 248 (434)
T ss_dssp EEEEEEETTEEEEEEECTTTSCCGGGGGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHTHHHHSCTTCTTCCCCTTCHHH
T ss_pred EEEeccccceeEEEEECCCCCCCcccccCCCCCcCCCcccccccCCcchhHHHHHHHHHHHhhhcccccccccCCCcHHH
Confidence 5899999999999999999999999998766778899999999999999999999999999988743 5999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCccchhhhhhhccccccccchhhhHHHHHHHHHHHHHhcCCCCCcceEEEecCCCceeeeee
Q 023706 78 MQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTE 157 (278)
Q Consensus 78 i~fI~aaanlRA~~y~I~~~~~~~~k~iag~IIPAIaTT~AiVagl~~~E~~K~l~g~~~~~~~~~~~~~~~~~~~~~~~ 157 (278)
++||+++||+||..|||.+++++.+++++|+|+|||+||+|+|||++++|++|+|+|.++.++++++|++..+..+..+.
T Consensus 249 ~~~v~~~a~~~~~~~gi~~~~~~~~~gv~~~iipaia~t~aiig~l~a~EaiK~l~g~~~~l~~~l~~d~~~~~~~~~~~ 328 (434)
T 1tt5_B 249 IQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFE 328 (434)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTCSCCCCSEEEEECSBSCEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHhHhhccCcccccHHHHHHHHHHHHHHHHHhCCCcccCceEEEEcCCCceeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999998888899999998877677788
Q ss_pred cccCCCCccCCC-cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEe----CCcEEEeeCCCchhhhhccccCCcHHHh-
Q 023706 158 FVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTY----RGKNLYMQAPPVLEEMTRSNLSLPLYDL- 231 (278)
Q Consensus 158 ~~~~p~C~vC~~-~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~----g~~~lY~~~~~~~~~~~~~~l~~~l~~l- 231 (278)
+.++|+|++|+. |.+++++.+.||++|++.|.++++++++.++|+. ++++||+.+++++++.++.||+|+|+||
T Consensus 329 ~~~~~~C~vC~~~~~~~~~~~~~tl~~~~~~l~~~~~~~~~~~~is~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~ 408 (434)
T 1tt5_B 329 AERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELG 408 (434)
T ss_dssp CCCCTTCTTTCSSCBCCCC-----CTTHHHHHHHCSSCCCSSCCCEET----TEECCCCCCTTTTTTSCC-CCC-----C
T ss_pred ccCCCCCCccCCCCceEEECCCccHHHHHHHHhccCccceEccEEEEEccCCCcEEEecCCcchhhhhHhhhcCCHHHcC
Confidence 889999999999 9999999889999999999998777899999988 5899999888888888889999999999
Q ss_pred hcccccceeeeccccccccCCcceEEEEEEEEe
Q 023706 232 MDKVAKDILHVTGVTGQSDKKTSCLRKLRVVFR 264 (278)
Q Consensus 232 v~~~~~~~~~~~~~~~v~d~~~~~~~~l~~~~~ 264 (278)
+++| ++| .|+|.+.+..++++|+|+
T Consensus 409 ~~~g--~~~------~v~d~~~~~~~~~~~~~~ 433 (434)
T 1tt5_B 409 LVDG--QEL------AVADVTTPQTVLFKLHFT 433 (434)
T ss_dssp CCSS--CCE------ECCCTTCSSCCEEC----
T ss_pred CCCC--CEE------EEECCCCcccEEEEEEec
Confidence 9999 799 999988888999999997
No 3
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-49 Score=414.22 Aligned_cols=165 Identities=19% Similarity=0.226 Sum_probs=133.4
Q ss_pred CCccCCCChH--HHHHHHHHHHHHHHHhCCCCccchhhhhhhccccccccchhhhHHHHHHHHHHHHHhcCCC---CCcc
Q 023706 67 GKSFDPDDPE--HMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSK---TLSN 141 (278)
Q Consensus 67 ~~~FdkDd~~--hi~fI~aaanlRA~~y~I~~~~~~~~k~iag~IIPAIaTT~AiVagl~~~E~~K~l~g~~~---~~~~ 141 (278)
|+.|||||+. |||||+|||||||++|+|++.+++++|+||||||||||||||+||||+++|++|+++|..+ +.+.
T Consensus 809 ~~~FeKDDd~n~h~dFi~aasNlRa~ny~I~~~~~~~~k~iaG~IIPAIaTT~AivaGl~~lE~~K~~~~~~~~~~~kn~ 888 (1015)
T 3cmm_A 809 PVDFEKDDDTNHHIEFITACSNCRAQNYFIETADRQKTKFIAGRIIPAIATTTSLVTGLVNLELYKLIDNKTDIEQYKNG 888 (1015)
T ss_dssp CCCCCTTCTTSSHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCEE
T ss_pred ceeeecCCCchhHHHHHHHHHHHHHHHcCCCccCHHHHHHHhCCcCccchhHHHHHHHHHHHHHHHHHhcccchhhhhhH
Confidence 3459999998 9999999999999999999999999999999999999999999999999999999998432 2233
Q ss_pred eEEEecCCCceeeeeecccCCCCccCC--C-cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhh
Q 023706 142 YLTYNGVAGLHIKVTEFVKDKDCLVCG--P-GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEE 218 (278)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~p~C~vC~--~-~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~ 218 (278)
|+.+..+...+...+. ++++.|..|+ + |++++++.++||++|+++++++| +++++||+.|.++||..+++. +
T Consensus 889 f~nla~~~~~~~~p~~-~~~~~~~~~~~~t~wd~~~v~~~~Tl~~li~~~~~~~--~~~~~~i~~~~~~ly~~~~~~--~ 963 (1015)
T 3cmm_A 889 FVNLALPFFGFSEPIA-SPKGEYNNKKYDKIWDRFDIKGDIKLSDLIEHFEKDE--GLEITMLSYGVSLLYASFFPP--K 963 (1015)
T ss_dssp EEETTTTEEEEECCCB-CCEEEETTEEEETTTCEEEEESCCBHHHHHHHHHHTT--CCEEEEEEETTEEEEETTCCH--H
T ss_pred HHhccCCceeecCCCC-CCCCCCCCCCCCeEEEEEEECCCCcHHHHHHHHHHHh--CCcceeeccCCcEEEecCCCc--h
Confidence 5543322211111221 3455577776 6 99999998999999999999987 899999999999999987541 1
Q ss_pred hhccccCCcHHHhhcccc
Q 023706 219 MTRSNLSLPLYDLMDKVA 236 (278)
Q Consensus 219 ~~~~~l~~~l~~lv~~~~ 236 (278)
..++||+++|++|++..+
T Consensus 964 ~~~~~l~~~l~~l~~~~~ 981 (1015)
T 3cmm_A 964 KLKERLNLPITQLVKLVT 981 (1015)
T ss_dssp HHHHHTTSBHHHHHHHHS
T ss_pred hhHHhccCCHHHHHHhhc
Confidence 133489999999988764
No 4
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=100.00 E-value=8.6e-49 Score=401.72 Aligned_cols=256 Identities=44% Similarity=0.803 Sum_probs=239.4
Q ss_pred CEEeeecCcceEEEEEcCCCCCcccccCCCCCCCCCCCcccccCCCCCcchhhhhhhhhhhcccCC---CCccCCCChHH
Q 023706 1 MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHS---GKSFDPDDPEH 77 (278)
Q Consensus 1 LIe~Gt~G~~G~v~vi~p~~t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~HcI~wa~~~~~~~~~~---~~~FdkDd~~h 77 (278)
||+||+.|+.||+++++|+.|+||+|.++..|++..+|.||++++|+.++|||+||+.+.|+++++ ++.||+||++|
T Consensus 540 ~i~~~~~g~~G~~~~~~p~~~~c~~c~~~~~p~~~~~~~c~~~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~ 619 (805)
T 2nvu_B 540 LIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEH 619 (805)
T ss_dssp EEEEEEETTEEEEEEECTTTSCCTTTSGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHTHHHHHCTTSTTCCCCTTCHHH
T ss_pred EEEeccccCceeEEEECCCCCCceeccCCCCCCCCCCCccccCCCCCCccHHHHHHHHhhcccccCCCCcccCCCCCHHH
Confidence 589999999999999999999999999876677788999999999999999999999999998874 45999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCccchhhhhhhccccccccchhhhHHHHHHHHHHHHHhcCCCCCcceEEEecCCCceeeeee
Q 023706 78 MQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTE 157 (278)
Q Consensus 78 i~fI~aaanlRA~~y~I~~~~~~~~k~iag~IIPAIaTT~AiVagl~~~E~~K~l~g~~~~~~~~~~~~~~~~~~~~~~~ 157 (278)
++||++.+|+||..|||.+.+++.+++++++|+|||+||+|+|||++++|++|+|+|.++.++|+++|++..+.....+.
T Consensus 620 ~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~i~p~i~~~~aiig~~~a~e~ik~l~~~~~~l~~~~~~~~~~~~~~~~~~ 699 (805)
T 2nvu_B 620 IQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFE 699 (805)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHCSSCCCCSEEEEECSBSCEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCcCHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHhccccccCceEEecCCCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999998888899999998877667788
Q ss_pred cccCCCCccCCC-cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEe----CCcEEEeeCCCchhhhhccccCCcHHHh-
Q 023706 158 FVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTY----RGKNLYMQAPPVLEEMTRSNLSLPLYDL- 231 (278)
Q Consensus 158 ~~~~p~C~vC~~-~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~----g~~~lY~~~~~~~~~~~~~~l~~~l~~l- 231 (278)
+.|+|+|++|+. |.+++++.++||++|++.|.++++++++.++|++ +.++||+.+++++++.++.||+|+|++|
T Consensus 700 ~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~ 779 (805)
T 2nvu_B 700 AERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELG 779 (805)
T ss_dssp CCCCTTCTTTSCCCEEEEECTTSBHHHHHHHHHHCTTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTT
T ss_pred CCCCCCCCeeCceeEEEEECCcChHHHHHHHHHhhhccCcccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcC
Confidence 889999999999 9999999889999999999998777899999988 5789999888888888889999999999
Q ss_pred hcccccceeeeccccccccCCcceEEEEEEEEe
Q 023706 232 MDKVAKDILHVTGVTGQSDKKTSCLRKLRVVFR 264 (278)
Q Consensus 232 v~~~~~~~~~~~~~~~v~d~~~~~~~~l~~~~~ 264 (278)
+++| ++| .|+|...+..++++|+|+
T Consensus 780 ~~~~--~~~------~~~~~~~~~~~~~~~~~~ 804 (805)
T 2nvu_B 780 LVDG--QEL------AVADVTTPQTVLFKLHFT 804 (805)
T ss_dssp CCTT--CEE------EEECTTSSSCEEEEEEEC
T ss_pred CCCC--CEE------EEEcCCCCeeEEEEEEec
Confidence 9999 799 999999899999999997
No 5
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus}
Probab=99.89 E-value=2e-24 Score=195.77 Aligned_cols=44 Identities=25% Similarity=0.385 Sum_probs=40.4
Q ss_pred CCccCCCChH--HHHHHHHHHHHHHHHhCCCCccchhhhhhhcccc
Q 023706 67 GKSFDPDDPE--HMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNII 110 (278)
Q Consensus 67 ~~~FdkDd~~--hi~fI~aaanlRA~~y~I~~~~~~~~k~iag~II 110 (278)
++.|||||+. |||||+|||||||++|||+++|++++|+||||||
T Consensus 231 pl~FeKDDd~N~hmdFItAaSNLRA~nY~I~~~dr~~~K~IAG~II 276 (276)
T 1z7l_A 231 PIDFEKDDDSNFHMDFIVAASNLRAENYDISPADRHKSKLIAGKII 276 (276)
T ss_dssp CCCCCSSCTTSSHHHHHHHHHHHHHHHTTCCCCCHHHHHHHTTC--
T ss_pred CcceecCCCcccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCcC
Confidence 4569999999 9999999999999999999999999999999997
No 6
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=99.64 E-value=7.5e-17 Score=124.27 Aligned_cols=91 Identities=26% Similarity=0.348 Sum_probs=82.2
Q ss_pred cCCC-cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeC----CcEEEeeCCCchhhhhccccCCcHHHh-hcccccce
Q 023706 166 VCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYR----GKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDI 239 (278)
Q Consensus 166 vC~~-~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g----~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~~~~ 239 (278)
+||. ...+++++++||++||+.|.++.++++..|+|+++ ++.||+.+|+.+++++|.||+|+|.|| +++| ++
T Consensus 1 ~Cg~~~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g--~e 78 (98)
T 1y8x_B 1 GSSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDG--QE 78 (98)
T ss_dssp ----CCCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTT--CE
T ss_pred CCCCCcEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCC--CE
Confidence 4776 67789999999999999999988889999999999 899999999999999999999999999 9999 89
Q ss_pred eeeccccccccCCcceEEEEEEEEe
Q 023706 240 LHVTGVTGQSDKKTSCLRKLRVVFR 264 (278)
Q Consensus 240 ~~~~~~~~v~d~~~~~~~~l~~~~~ 264 (278)
+ .|+|.+.++.++++|+|+
T Consensus 79 i------~VtD~~~p~~~~~rl~f~ 97 (98)
T 1y8x_B 79 L------AVADVTTPQTVLFKLHFT 97 (98)
T ss_dssp E------EEECTTCSSCEEEEEEC-
T ss_pred E------EEECCCCcccEEEEEEec
Confidence 9 999999999999999997
No 7
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*
Probab=99.45 E-value=1.1e-13 Score=126.48 Aligned_cols=104 Identities=20% Similarity=0.346 Sum_probs=77.6
Q ss_pred CEEeeecC--cceEEEEEcCCCCCcccccCCCCCCCC-CCCcccccCCCCCcchhhhhhhhhhhcccCCCCccCCCChHH
Q 023706 1 MVDGGTEG--FKGHARVIIPGVTPCFECTIWLFPPQV-KFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEH 77 (278)
Q Consensus 1 LIe~Gt~G--~~G~v~vi~p~~t~Cy~C~~~~~p~~~-~~p~CTi~~~P~~~~HcI~wa~~~~~~~~~~~~~FdkDd~~h 77 (278)
||++|+.| +.||+++|.|+.|+||+|.++..+++. ..+.|.
T Consensus 165 li~~gv~~~~~~Gqv~~~~pg~t~Cy~Cl~p~~~~~~~~~~~~~------------------------------------ 208 (292)
T 3h8v_A 165 WMESGVSENAVSGHIQLIIPGESACFACAPPLVVAANIDEKTLK------------------------------------ 208 (292)
T ss_dssp EEEEEECTTSSEEEEEEECTTTSCCTTSSSCCCCCCC-------------------------------------------
T ss_pred EEEeeeecceeEEEEEEECCCCCCCHhhcCCccccccccccchh------------------------------------
Confidence 58999986 899999999999999999986432211 112221
Q ss_pred HHHHHHHHHHHHHHhCCCCccchhhhhhhccccccccchhhhHHHHHHHHHHHHHhcCCCCCcceEEEecCCCceeeeee
Q 023706 78 MQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTE 157 (278)
Q Consensus 78 i~fI~aaanlRA~~y~I~~~~~~~~k~iag~IIPAIaTT~AiVagl~~~E~~K~l~g~~~~~~~~~~~~~~~~~~~~~~~ 157 (278)
-+|..-++++++.++||++|++|++|+|+|.++. ...+.|++.. ..++.++
T Consensus 209 ---------------------------~~gvc~~~l~~~~g~vgslqA~EalK~L~g~g~~-~~ll~~D~~~-~~~~~~~ 259 (292)
T 3h8v_A 209 ---------------------------REGVCAASLPTTMGVVAGILVQNVLKFLLNFGTV-SFYLGYNAMQ-DFFPTMS 259 (292)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCC-CSEEEEETTT-TBCCEEC
T ss_pred ---------------------------hcCcccCCcchHHHHHHHHHHHHHHHHHhCCCCC-CeEEEEECCC-CcEEEEe
Confidence 1122224588999999999999999999998764 4567777654 5678888
Q ss_pred cccCCCCc--cCCC
Q 023706 158 FVKDKDCL--VCGP 169 (278)
Q Consensus 158 ~~~~p~C~--vC~~ 169 (278)
+.|+|+|+ +|+.
T Consensus 260 ~~~~p~C~~~~Cg~ 273 (292)
T 3h8v_A 260 MKPNPQCDDRNCRK 273 (292)
T ss_dssp CCCCTTCSCHHHHH
T ss_pred cCCCcCcCccccCC
Confidence 99999999 9985
No 8
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=99.41 E-value=5.1e-13 Score=124.66 Aligned_cols=154 Identities=15% Similarity=0.168 Sum_probs=117.6
Q ss_pred CEEeeecCcceEEEEEcCCCCCcccccCCC--CCC------------------------------C--CCCCcc--ccc-
Q 023706 1 MVDGGTEGFKGHARVIIPGVTPCFECTIWL--FPP------------------------------Q--VKFPLC--TLA- 43 (278)
Q Consensus 1 LIe~Gt~G~~G~v~vi~p~~t~Cy~C~~~~--~p~------------------------------~--~~~p~C--Ti~- 43 (278)
||++|+.|+.|++.+..+ ..+|++|.... .|. + -..|.| +++
T Consensus 153 ~i~~~~~G~~G~v~~d~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~ 231 (346)
T 1y8q_A 153 FFTGDVFGYHGYTFANLG-EHEFVEEKTKVAKVSQGVEDGPDTKRAKLDSSETTMVKKKVVFCPVKEALEVDWSSEKAKA 231 (346)
T ss_dssp EEEEEEEBTEEEEEEECS-EEEEEEECC-----------------------CCCEEEEEEECCCHHHHTSCCSCSHHHHH
T ss_pred EEEEeecccEEEEEEecC-CCCEEEcCCCCcCCCcccccCCCCCcccccCCceEEEeceeeccCHHHHhcCCchhhhhhh
Confidence 589999999999999886 67888886541 110 0 013344 332
Q ss_pred CCCCCcchhhhhhhhhhhcccCCCCccCCCChHHHHHHHHHHHHHHHHhCCCCccchhhhhhhccccccccchhhhHHHH
Q 023706 44 ETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAA 123 (278)
Q Consensus 44 ~~P~~~~HcI~wa~~~~~~~~~~~~~FdkDd~~hi~fI~aaanlRA~~y~I~~~~~~~~k~iag~IIPAIaTT~AiVagl 123 (278)
.+++.+.|++.|.....|.+.++....+.+++++++++++.|+.++..++++... ...++..++.+.+++++|+|||+
T Consensus 232 ~~~r~~~~~~~~~al~~f~~~~~~~P~~~~~~~d~~~l~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~l~pv~AiiGGi 309 (346)
T 1y8q_A 232 ALKRTTSDYFLLQVLLKFRTDKGRDPSSDTYEEDSELLLQIRNDVLDSLGISPDL--LPEDFVRYCFSEMAPVCAVVGGI 309 (346)
T ss_dssp HHTTSCTHHHHHHHHHHHHHHSSSCCCGGGHHHHHHHHHHHHHHHHHTTTCCGGG--SCGGGGGSSCSBCHHHHHHHHHH
T ss_pred hcccccHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccc--CCHHHHHHhcCCccHHHHHHHHH
Confidence 2678899999999988999988766666677889999999999999999976321 22344556678999999999999
Q ss_pred HHHHHHHHHhcCCCCCcceEEEecCCCceeeeeec
Q 023706 124 CALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEF 158 (278)
Q Consensus 124 ~~~E~~K~l~g~~~~~~~~~~~~~~~~~~~~~~~~ 158 (278)
+++|++|+++|+..+++|+++|++.... ...+.+
T Consensus 310 ~aQEviK~it~k~~Pl~n~~~fD~~~~~-~~~~~l 343 (346)
T 1y8q_A 310 LAQEIVKALSQRDPPHNNFFFFDGMKGN-GIVECL 343 (346)
T ss_dssp HHHHHHHHHHTBSCCCCSEEEEETTTTE-EEEECC
T ss_pred HHHHHHHHhcCCCcccccEEEEEccccc-eeEEec
Confidence 9999999999998889999999987653 344444
No 9
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=99.23 E-value=2.4e-11 Score=108.15 Aligned_cols=98 Identities=23% Similarity=0.505 Sum_probs=74.2
Q ss_pred CEEeeecCcceEEEEEcCCC-CCcccccCCCCCCCCCCCcccccCCCCCcchhhhhhhhhhhcccCCCCccCCCChHHHH
Q 023706 1 MVDGGTEGFKGHARVIIPGV-TPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQ 79 (278)
Q Consensus 1 LIe~Gt~G~~G~v~vi~p~~-t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~HcI~wa~~~~~~~~~~~~~FdkDd~~hi~ 79 (278)
+|++|+.|+.|++.++.|+. ++||+|.++..|+ ..+.|.
T Consensus 149 ~i~~~~~g~~g~v~~~~p~~~~~c~~c~~~~~~~--~~~~c~-------------------------------------- 188 (249)
T 1jw9_B 149 LVSGAAIRMEGQITVFTYQDGEPCYRCLSRLFGE--NALTCV-------------------------------------- 188 (249)
T ss_dssp EEEEEEEBTEEEEEEECCCTTCCCTHHHHTTCCC----------------------------------------------
T ss_pred EEEeeeccceEEEEEEeCCCCCCceEEECCCCCc--cccccc--------------------------------------
Confidence 58899999999999999987 7999998753211 112221
Q ss_pred HHHHHHHHHHHHhCCCCccchhhhhhhccccccccchhhhHHHHHHHHHHHHHhcCCCCCc-ceEEEecCCCceeeeeec
Q 023706 80 WVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS-NYLTYNGVAGLHIKVTEF 158 (278)
Q Consensus 80 fI~aaanlRA~~y~I~~~~~~~~k~iag~IIPAIaTT~AiVagl~~~E~~K~l~g~~~~~~-~~~~~~~~~~~~~~~~~~ 158 (278)
..++++++++++|++++.|++|+|.|.++.+. .++.|++.. ..+..+++
T Consensus 189 -----------------------------~~g~~~~~~~~~g~~~a~e~lk~l~g~~~~~~~~~~~~d~~~-~~~~~~~~ 238 (249)
T 1jw9_B 189 -----------------------------EAGVMAPLIGVIGSLQAMEAIKMLAGYGKPASGKIVMYDAMT-CQFREMKL 238 (249)
T ss_dssp ------------------------------CCBCHHHHHHHHHHHHHHHHHHHHTCSCCCBSEEEEEETTT-TEEEEEEC
T ss_pred -----------------------------ccCCcchHHHHHHHHHHHHHHHHHhCCCCCccCeEEEEECCC-CEEEEEec
Confidence 12467788999999999999999999876664 466677655 45677888
Q ss_pred ccCCCCccCC
Q 023706 159 VKDKDCLVCG 168 (278)
Q Consensus 159 ~~~p~C~vC~ 168 (278)
.++|+|++|+
T Consensus 239 ~~~~~C~~C~ 248 (249)
T 1jw9_B 239 MRNPGCEVCG 248 (249)
T ss_dssp CCCTTCTTTC
T ss_pred CCCcCCCCcC
Confidence 8999999997
No 10
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=99.20 E-value=3.5e-11 Score=107.26 Aligned_cols=99 Identities=19% Similarity=0.386 Sum_probs=74.6
Q ss_pred CEEeeecCcceEEEEEcCCC-CCcccccCCCCCCCCCCCcccccCCCCCcchhhhhhhhhhhcccCCCCccCCCChHHHH
Q 023706 1 MVDGGTEGFKGHARVIIPGV-TPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQ 79 (278)
Q Consensus 1 LIe~Gt~G~~G~v~vi~p~~-t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~HcI~wa~~~~~~~~~~~~~FdkDd~~hi~ 79 (278)
+|++|+.|+.|++.++.|+. ++||+|.++..|+. .+.|.
T Consensus 146 ~i~~~~~g~~G~v~~~~p~~~~~c~~cl~~~~~~~--~~~~~-------------------------------------- 185 (251)
T 1zud_1 146 LITASAVGFGGQLMVLTPPWEQGCYRCLWPDNQEP--ERNCR-------------------------------------- 185 (251)
T ss_dssp EEEEEEEBTEEEEEEECTTCTTCCHHHHCC--------------------------------------------------
T ss_pred EEEEeccccceEEEEEccCCCCCcEEEeCCCCCCC--CCccc--------------------------------------
Confidence 58999999999999999987 79999997532211 11221
Q ss_pred HHHHHHHHHHHHhCCCCccchhhhhhhccccccccchhhhHHHHHHHHHHHHHhcCCCCCcceEEEecCCCceeeeeecc
Q 023706 80 WVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFV 159 (278)
Q Consensus 80 fI~aaanlRA~~y~I~~~~~~~~k~iag~IIPAIaTT~AiVagl~~~E~~K~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (278)
..++++++++++|++++.|++|+|.|.+...++++.|++.. ..+..+.+.
T Consensus 186 -----------------------------~~g~~~p~~~~~g~~~A~e~lk~l~g~~~~~~~~~~~d~~~-~~~~~~~~~ 235 (251)
T 1zud_1 186 -----------------------------TAGVVGPVVGVMGTLQALEAIKLLSGIETPAGELRLFDGKS-SQWRSLALR 235 (251)
T ss_dssp ------------------------------CCBCHHHHHHHHHHHHHHHHHHHHTCCCCCSEEEEEETTT-TEEEEEECC
T ss_pred -----------------------------cCCchHHHHHHHHHHHHHHHHHHHhCCCCcCCcEEEEECCC-CEEEEEecC
Confidence 12357788899999999999999999876666677777665 456778888
Q ss_pred cCCCCccCCC
Q 023706 160 KDKDCLVCGP 169 (278)
Q Consensus 160 ~~p~C~vC~~ 169 (278)
++|+|++|+.
T Consensus 236 ~~p~C~~C~~ 245 (251)
T 1zud_1 236 RASGCPVCGG 245 (251)
T ss_dssp CCTTCTTTCC
T ss_pred CCcCCCccCC
Confidence 9999999985
No 11
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Probab=99.20 E-value=2.9e-11 Score=113.06 Aligned_cols=58 Identities=22% Similarity=0.394 Sum_probs=46.4
Q ss_pred ccccchhhhHHHHHHHHHHHHHhcCCCCC-c-ceEEEecCCCceeeeeecccCCCCccCCC
Q 023706 111 PAIASTNAIISAACALETLKIASGCSKTL-S-NYLTYNGVAGLHIKVTEFVKDKDCLVCGP 169 (278)
Q Consensus 111 PAIaTT~AiVagl~~~E~~K~l~g~~~~~-~-~~~~~~~~~~~~~~~~~~~~~p~C~vC~~ 169 (278)
|.+++++++||++|++|++|+|+|.++.. . ..+.++... ..+..+.+.|+|+|++|+.
T Consensus 292 gv~~~~~~iig~l~a~Ealk~l~g~~~~~~~g~l~~~d~~~-~~~~~~~~~~~p~C~~Cg~ 351 (353)
T 3h5n_A 292 ATFAPVNNVAAALCAADVIKFIGKYSEPLSLNKRIGIWSDE-IKIHSQNMGRSPVCSVCGN 351 (353)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHCSSCCTTBTEEEEECSSS-SCEEEEECCCCTTCTTTC-
T ss_pred CchhhHHHHHHHHHHHHHHHHhcCCCCcccCCeEEEEECCC-CEEEEEccCCCcCCCCCCC
Confidence 57889999999999999999999976653 3 456666544 5667888889999999984
No 12
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Probab=99.07 E-value=3.8e-10 Score=104.85 Aligned_cols=57 Identities=12% Similarity=0.192 Sum_probs=43.3
Q ss_pred cccchhhhHHHHHHHHHHHHHhcCCCCC-----cce--EEEecCCCceeeeeecc--cCCCCccCCC
Q 023706 112 AIASTNAIISAACALETLKIASGCSKTL-----SNY--LTYNGVAGLHIKVTEFV--KDKDCLVCGP 169 (278)
Q Consensus 112 AIaTT~AiVagl~~~E~~K~l~g~~~~~-----~~~--~~~~~~~~~~~~~~~~~--~~p~C~vC~~ 169 (278)
.++++.++||++|++|++|+|.|.+... .+. +.|++.. ..++.+++. ++|+|++|+.
T Consensus 219 v~~p~vg~igs~qA~E~lk~l~~~~~~~~~~~~~G~l~~~~d~~~-~~f~~~~l~~~~~~~C~~C~~ 284 (340)
T 3rui_A 219 VTRPGVAMMASSLAVELMTSLLQTKYSGSETTVLGDIPHQIRGFL-HNFSILKLETPAYEHCPACSP 284 (340)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHTSCCCTTSSEETTEECCSEEEEET-TTTEEEEECCBCCTTCTTTCH
T ss_pred eecchHHHHHHHHHHHHHHHHhCCCCCccccCccCcccEEEecCc-CCceEEEecCCCCCCCCCCCH
Confidence 4778999999999999999999976433 122 5677665 345677665 5899999994
No 13
>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A
Probab=98.89 E-value=4.1e-09 Score=104.33 Aligned_cols=57 Identities=12% Similarity=0.192 Sum_probs=43.3
Q ss_pred cccchhhhHHHHHHHHHHHHHhcCCCCC-----cce--EEEecCCCceeeeeecc--cCCCCccCCC
Q 023706 112 AIASTNAIISAACALETLKIASGCSKTL-----SNY--LTYNGVAGLHIKVTEFV--KDKDCLVCGP 169 (278)
Q Consensus 112 AIaTT~AiVagl~~~E~~K~l~g~~~~~-----~~~--~~~~~~~~~~~~~~~~~--~~p~C~vC~~ 169 (278)
.++++.|+||++|++|++|+|.|.+... .+. +.+++.. ..+..+++. ++|+|++|+.
T Consensus 511 Vl~P~vgiigs~qA~EaLk~Ll~~g~~~~~~~~~G~l~~~~dg~~-~~f~~~~l~~~~~p~C~~C~~ 576 (615)
T 4gsl_A 511 VTRPGVAMMASSLAVELMTSLLQTKYSGSETTVLGDIPHQIRGFL-HNFSILKLETPAYEHCPACSP 576 (615)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHSCCCTTSSEETTEECCSEEEEET-TTTEEEEECCCCCTTCTTTCH
T ss_pred eecchHHHHHHHHHHHHHHHHhCCCCcccCcCcCCCCcEEEeccC-CcceEEeccCCCCCCCCCCCH
Confidence 4778999999999999999999976432 122 5667665 345666665 6899999994
No 14
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A
Probab=98.63 E-value=7.1e-08 Score=95.41 Aligned_cols=57 Identities=14% Similarity=0.213 Sum_probs=38.9
Q ss_pred cccchhhhHHHHHHHHHHHHHhcCCC-----CCcce--EEEecCCCceeeeee--cccCCCCccCCC
Q 023706 112 AIASTNAIISAACALETLKIASGCSK-----TLSNY--LTYNGVAGLHIKVTE--FVKDKDCLVCGP 169 (278)
Q Consensus 112 AIaTT~AiVagl~~~E~~K~l~g~~~-----~~~~~--~~~~~~~~~~~~~~~--~~~~p~C~vC~~ 169 (278)
.++++.++||++|++|++|+|.|.++ .+.+. ..+++... .+..++ ..++|+|++|+.
T Consensus 512 Vl~p~vgvigslqA~Ealk~Llg~~~ap~~~~~~g~l~~~l~g~l~-~f~~~~l~~~r~~~C~~Cg~ 577 (598)
T 3vh1_A 512 VTRPGVAMMASSLAVELMTSLLQTKYSGSETTVLGDIPHQIRGFLH-NFSILKLETPAYEHCPACSP 577 (598)
T ss_dssp CSCTHHHHHHHHHHHHHHHHHHSCCCSSSSEETTEECCSEEEEETT-TTEEEEECCBCCTTCTTTSH
T ss_pred ccCcHHHHHHHHHHHHHHHHHhCCCcccccccccccccceeecccc-cceeEeccCCCCCCCCCCch
Confidence 36778899999999999999998764 22222 13344332 234444 448999999994
No 15
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
Probab=97.83 E-value=2.9e-05 Score=81.28 Aligned_cols=41 Identities=24% Similarity=0.364 Sum_probs=35.6
Q ss_pred cccchhhhHHHHHHHHHHHHHhcCCCCCcceEEEecCCCce
Q 023706 112 AIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLH 152 (278)
Q Consensus 112 AIaTT~AiVagl~~~E~~K~l~g~~~~~~~~~~~~~~~~~~ 152 (278)
-+++++|+++|+++.|++|+++|+..++++++.|++.....
T Consensus 349 el~pvaA~iGGivAQEVIKaiT~kf~Pi~~~~~~d~~~~~~ 389 (1015)
T 3cmm_A 349 DIPGVVAFFGGLVAQEVLKACSGKFTPLKQFMYFDSLESLP 389 (1015)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCBSCCCCSEEEEECGGGSC
T ss_pred ccCcHHHHhcchHHHHHHHHhccCCCcccceEEecchhhcc
Confidence 47788899999999999999999988899999998765443
No 16
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=97.72 E-value=3.7e-05 Score=61.08 Aligned_cols=68 Identities=19% Similarity=0.239 Sum_probs=52.4
Q ss_pred EEEEeCC----CCCHHHHHHHHHcCccCcceeeEEEe--CCcEEEeeCCCchhhhhccccCCcHHHh-hcccccceeeec
Q 023706 171 VLIELDT----SVTLEKFINLLEEHPKLQLAKASVTY--RGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDILHVT 243 (278)
Q Consensus 171 ~~i~i~~----~~TL~~li~~l~~~~~~~l~~~~i~~--g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~~~~~~~~ 243 (278)
..+.++. .+||++|++.++++|+++= ..+|.- +.++||.+ +++| ||.|+|++| +++| +.|
T Consensus 8 gvl~v~~~dl~~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~---DfDD----nl~k~L~dLgv~~g--sfL--- 74 (127)
T 3onh_A 8 GVIKLSSDCLNKMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDY---DFED----LNDRTLSEINLGNG--SII--- 74 (127)
T ss_dssp EEEEECHHHHHHCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEET---TBCT----TTTSBTTTTTCCTT--CEE---
T ss_pred EEEEeCcccccccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCC---Cccc----cccCcHHHcCcCCC--cEE---
Confidence 4455653 4899999999999987764 556663 57899975 5666 999999999 9999 578
Q ss_pred cccccccCCcc
Q 023706 244 GVTGQSDKKTS 254 (278)
Q Consensus 244 ~~~~v~d~~~~ 254 (278)
+|+|....
T Consensus 75 ---tv~DEdde 82 (127)
T 3onh_A 75 ---LFSDEEGD 82 (127)
T ss_dssp ---EEEESCCS
T ss_pred ---EEEccccc
Confidence 77776543
No 17
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Probab=97.55 E-value=2.7e-05 Score=76.25 Aligned_cols=48 Identities=25% Similarity=0.259 Sum_probs=40.7
Q ss_pred CEEeeecCcceEEEEEcCCCCCcccccCCCCCCCCCCCcccccCCCCCcchhh
Q 023706 1 MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCI 53 (278)
Q Consensus 1 LIe~Gt~G~~G~v~vi~p~~t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~HcI 53 (278)
||++|+.|+.||++++.| ...|+++. |++...+.|+++.+|..++||-
T Consensus 152 lI~~~~~G~~G~v~~~~p-~~~~~d~~----~~~~~~~lr~~~p~P~~~~~~~ 199 (531)
T 1tt5_A 152 LLICRTYGLVGYMRIIIK-EHPVIESH----PDNALEDLRLDKPFPELREHFQ 199 (531)
T ss_dssp EEEEEEETTEEEEEEECS-CEEESCCC----CSSCCCCCCSSSCCHHHHHHHH
T ss_pred EEEEEecCCeEEEEEEcC-CceeccCC----CCCCCCcccccCCCCCchhhhh
Confidence 589999999999999999 45566664 4467899999999999999993
No 18
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus}
Probab=96.95 E-value=0.00063 Score=61.25 Aligned_cols=31 Identities=26% Similarity=0.498 Sum_probs=29.1
Q ss_pred CCCccCCCChHHHHHHHHHHHHHHHHhCCCC
Q 023706 66 SGKSFDPDDPEHMQWVYSEAVKRAELFGIPG 96 (278)
Q Consensus 66 ~~~~FdkDd~~hi~fI~aaanlRA~~y~I~~ 96 (278)
.|+.||..|+.|++||.++|||||.+|||++
T Consensus 135 ~PL~fd~~~~~h~~fI~aaa~L~A~~~gi~~ 165 (276)
T 1z7l_A 135 HPLTFDVNNTLHLDYVMAAANLFAQTYGLTG 165 (276)
T ss_dssp CCCCCCTTSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCcccCCCchHHHHHHHHHHHHHHHHcCCCC
Confidence 4789999999999999999999999999975
No 19
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Probab=95.70 E-value=0.029 Score=54.78 Aligned_cols=39 Identities=23% Similarity=0.300 Sum_probs=35.1
Q ss_pred cccchhhhHHHHHHHHHHHHHhcCCCCCcceEEEecCCC
Q 023706 112 AIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAG 150 (278)
Q Consensus 112 AIaTT~AiVagl~~~E~~K~l~g~~~~~~~~~~~~~~~~ 150 (278)
-+.+++|+++|+++.|++|++++...+++|+++|++...
T Consensus 486 el~pvaA~~GGi~AQEviK~iT~q~~Pi~n~~~fDg~~~ 524 (531)
T 1tt5_A 486 EPHTIAAFLGGAAAQEVIKIITKQFVIFNNTYIYSGMSQ 524 (531)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTCSBCCCSCEEEETTTT
T ss_pred CcCHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCCc
Confidence 477888999999999999999999888999999998764
No 20
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=76.18 E-value=0.68 Score=33.32 Aligned_cols=60 Identities=20% Similarity=0.211 Sum_probs=37.9
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hccccccee
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 240 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~~~~~ 240 (278)
..+++++++.|+.+|.+.+.++. ++. .....||..+++. ++... .-.++|+++ +++| +.|
T Consensus 15 ~~Ri~v~~~~t~~~L~~~I~~~~--~i~-----~~~~~l~~~~~p~-~~l~~-~~~~~l~~lgl~hG--d~l 75 (80)
T 2pjh_A 15 VKRITATKRETAATFLKKVAKEF--GFQ-----NNGFSVYINRNKT-GEITA-SSSKSLHLLKIKHG--DLL 75 (80)
T ss_dssp EEECCCCSSCCHHHHHHHHHHHT--CCC-----TTTCCCCCSCCGG-GGSSS-CCCCTTTTTCCCTT--CCE
T ss_pred CEEEEcCCcChHHHHHHHHHHHc--CCC-----CCcceEEecCCCC-CcccC-CCCCCHHHcCCCCC--CEE
Confidence 45677777889999999999986 332 1223444444331 11111 246789999 9999 555
No 21
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=69.08 E-value=4.4 Score=28.94 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=38.1
Q ss_pred EE-eCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCC-CchhhhhccccCCcHHHh-hcccccceeeeccccccc
Q 023706 173 IE-LDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAP-PVLEEMTRSNLSLPLYDL-MDKVAKDILHVTGVTGQS 249 (278)
Q Consensus 173 i~-i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~-~~~~~~~~~~l~~~l~~l-v~~~~~~~~~~~~~~~v~ 249 (278)
+. ++.+.|+.+|.+.|.++.++..+ ..+++|. +| +.++- .+-.++|+++ +++| +.| +|.
T Consensus 14 v~~l~~~~Tv~~Lk~~I~~~~gi~~~------~qrL~~~-~p~k~l~l---~~~~~tL~~~gl~~g--~~l------~v~ 75 (86)
T 2kzr_A 14 LQGLSSRTRLRELQGQIAAITGIAPG------SQRILVG-YPPECLDL---SDRDITLGDLPIQSG--DML------IVE 75 (86)
T ss_dssp ECSCCTTCBHHHHHHHHHHHTCCCTT------TCCCEES-SCCCCCCC---CCSSCBTTTSSCCTT--CEE------ECC
T ss_pred eeecCCCCCHHHHHHHHHHHhCCCcc------ceEEEeC-CCCccccc---CCCCCCHHHcCCCCC--CEE------EEE
Confidence 44 66688999999999988632222 2234453 33 22210 0135789999 9999 566 566
Q ss_pred cCC
Q 023706 250 DKK 252 (278)
Q Consensus 250 d~~ 252 (278)
|..
T Consensus 76 ~~~ 78 (86)
T 2kzr_A 76 EDQ 78 (86)
T ss_dssp CCS
T ss_pred eCC
Confidence 554
No 22
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=67.43 E-value=8.8 Score=26.08 Aligned_cols=53 Identities=13% Similarity=0.273 Sum_probs=34.1
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
...++++++.|+.+|-+.+.++.++..+...+.++++ .+++ +++|+++ +++|+
T Consensus 15 ~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk--------~L~d------~~tL~~~~i~~g~ 68 (77)
T 2bwf_A 15 KWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGK--------ILKD------DQTVESYHIQDGH 68 (77)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTE--------ECCT------TSBTGGGTCCTTC
T ss_pred EEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCe--------EcCC------CCCHHHcCCCCCC
Confidence 3457788889999999999988744433333333221 2322 3678888 88883
No 23
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=58.03 E-value=12 Score=26.83 Aligned_cols=57 Identities=7% Similarity=-0.091 Sum_probs=37.1
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCC-----CchhhhhccccCCcHHHh-hccccccee
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAP-----PVLEEMTRSNLSLPLYDL-MDKVAKDIL 240 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~-----~~~~~~~~~~l~~~l~~l-v~~~~~~~~ 240 (278)
+..+.++..+|+.+|-+.|.++.+...+.. +++|.... +.+++ .++|++. +++|+ .|
T Consensus 16 ~~E~r~~~s~TI~~lK~ki~~~~Gip~~~Q------rLi~~~~~~~~~g~~l~d------~~tL~~Y~i~~g~--~i 78 (86)
T 4b6w_A 16 VPEKRYGLAQTIESIKENVFTHFATPPEYM------QLQLIDDRGITIEKNMAN------DKQLGYYQCRDEF--VI 78 (86)
T ss_dssp EEEEEEETTSBHHHHHHHHHTTSCCCGGGE------EEEEECTTSCEEESSCCT------TSBGGGGTCCTTC--EE
T ss_pred EEEEEcCccCcHHHHHHHHHHHHCCCHHHE------EEEEecCCCCceeeEcCC------CCCHHHCCCCCCC--EE
Confidence 556778889999999999999874433322 34443211 12222 4689999 99994 55
No 24
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=57.49 E-value=22 Score=26.19 Aligned_cols=57 Identities=14% Similarity=0.011 Sum_probs=36.9
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeC-CC---ch-hhhhccccCCcHHHh-hccccccee
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQA-PP---VL-EEMTRSNLSLPLYDL-MDKVAKDIL 240 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~-~~---~~-~~~~~~~l~~~l~~l-v~~~~~~~~ 240 (278)
+..+++++++|+.+|-+.|.++.+...+.. +++|... +. .+ +| .++|++. +++|+ .|
T Consensus 28 ~~e~~v~~~~TV~~LK~kIe~~~Gip~~~Q------rLi~~g~~g~~~~~L~~D------~~tL~~Y~I~~g~--~I 90 (97)
T 2kj6_A 28 SADARFSPQMSVEAVKEKLWKKCGTSVNSM------ALELYDDSGSKVAVLSDD------SRPLGFFSPFDGF--RL 90 (97)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHHCCCTTSE------EEEEECSSSCBCCCSSGG------GSCHHHHCCCSCC--EE
T ss_pred EEEEEeCCCChHHHHHHHHHHHHCcCHHHe------EEEEecCCCcccceecCC------cCCHHHCCCCCCC--EE
Confidence 567888899999999999999874333322 2333221 11 12 22 4689999 99994 55
No 25
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=51.46 E-value=34 Score=24.91 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=34.9
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hccc
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKV 235 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~ 235 (278)
...++++.+.|+.+|-+.|.++.++..+...|.++.+ .++| =.++|.++ +++|
T Consensus 23 ~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk--------~L~D-----~~~tL~~ygI~~g 76 (102)
T 1v5o_A 23 TFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQ--------LLTD-----DHCSLGSYGLKDG 76 (102)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTE--------EECC-----SSSBHHHHTCCTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCE--------ECCC-----CcccHHHCCCCCC
Confidence 3457888889999999999998754444333333322 2222 13678999 8888
No 26
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=50.51 E-value=33 Score=23.96 Aligned_cols=54 Identities=19% Similarity=0.159 Sum_probs=36.2
Q ss_pred EEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hccccccee
Q 023706 171 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 240 (278)
Q Consensus 171 ~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~~~~~ 240 (278)
..+.++++.+++.+.+.+.++.++..+ ..+.+|.. ..+ +-+.+..+| +++| +.|
T Consensus 21 i~~~i~~~t~l~kl~~~y~~~~gi~~~------~~rf~fdG--~~l------~~~~Tp~~l~medg--D~I 75 (79)
T 3a4r_A 21 LEISLSPDSPLKVLMSHYEEAMGLSGH------KLSFFFDG--TKL------SGKELPADLGLESG--DLI 75 (79)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTCTTC------CCEEEETT--EEC------CSCCCHHHHTCCTT--CEE
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCcc------cEEEEECC--EEc------CCCCCHHHcCCCCC--CEE
Confidence 567888889999999999998743322 22344421 111 235789999 9999 565
No 27
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.33 E-value=17 Score=26.18 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=32.6
Q ss_pred EE-EeCCCCCHHHHHHHHHcC-ccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 172 LI-ELDTSVTLEKFINLLEEH-PKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 172 ~i-~i~~~~TL~~li~~l~~~-~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
.+ +++++.|+.+|-+.|.++ .++..+ ..+++|....+.++| .++|++. +++|+
T Consensus 26 ~l~~v~~~~TV~~lK~~I~~~~~~i~~~------~QrL~~~~~Gk~L~D------~~tL~~y~i~~~s 81 (88)
T 2dzj_A 26 FLDKVEPHATIAEIKNLFTKTHPQWYPA------RQSLRLDPKGKSLKD------EDVLQKLPVGTTA 81 (88)
T ss_dssp EEEEECSSCBHHHHHHHHHHHCSSSCTT------TCCEESSTTSCCCCT------TCBTTTSSCCSEE
T ss_pred EEeEcCCCCcHHHHHHHHHHHhcCCChH------HeEEEecCCCcCcCC------CCCHHHcCCCCCC
Confidence 46 788889999999999984 322222 223444322233433 3677787 77773
No 28
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=48.64 E-value=28 Score=25.94 Aligned_cols=53 Identities=17% Similarity=0.040 Sum_probs=36.3
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
-..++++++.|+.+|-+.|.++.++..+ ..++||.. +.++| .++|++. |++|+
T Consensus 31 ~~~lev~~~~TV~~lK~kI~~k~gip~~------qQrLI~~G--KiL~D------~~TL~~y~I~~gs 84 (100)
T 1wju_A 31 KNLLETRLHITGRELRSKIAETFGLQEN------YIKIVINK--KQLQL------GKTLEEQGVAHNV 84 (100)
T ss_dssp SEEEEEESSSBHHHHHHHHHHHTTCCST------TCEEEETT--EECCT------TSBHHHHTCCSSE
T ss_pred EEEEEeCCcCHHHHHHHHHHHHHCcCHH------HeEEEeCC--eECCC------CCcHHHcCCCCCC
Confidence 4678888899999999999998743322 23555532 23333 3678888 88884
No 29
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=46.13 E-value=19 Score=26.72 Aligned_cols=23 Identities=13% Similarity=0.388 Sum_probs=19.8
Q ss_pred EEEEeC-CCCCHHHHHHHHHcCcc
Q 023706 171 VLIELD-TSVTLEKFINLLEEHPK 193 (278)
Q Consensus 171 ~~i~i~-~~~TL~~li~~l~~~~~ 193 (278)
.+++++ ++.|+.+|.+.|.++.+
T Consensus 19 ~~v~v~~~~~Tv~~LK~kI~~~~g 42 (107)
T 1wf9_A 19 ERVSVDGPHITVSQLKTLIQDQLQ 42 (107)
T ss_dssp EEEEECCTTSBHHHHHHHHHHHSC
T ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Confidence 378888 88999999999998863
No 30
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=46.13 E-value=30 Score=24.37 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=34.1
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
...++++++.|+.+|-+.+.++.++..+... ++| .. ..+++ +++|+++ +++|+
T Consensus 16 ~~~~~v~~~~TV~~LK~~I~~~~gip~~~qr------L~~-~G-k~L~D------~~tL~~~~I~~g~ 69 (88)
T 2hj8_A 16 SSTYEVRLTQTVAHLKQQVSGLEGVQDDLFW------LTF-EG-KPLED------QLPLGEYGLKPLS 69 (88)
T ss_dssp EEEEEEESSSBHHHHHHHHHHHTCSCTTTEE------EES-SS-SCCCT------TSBHHHHHCSTTC
T ss_pred EEEEEECCCCcHHHHHHHHHHHhCCChhHEE------EEE-CC-EECCC------CCcHHHcCCCCCC
Confidence 3456777889999999999988643333222 222 21 23333 4789999 88884
No 31
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=45.39 E-value=44 Score=24.33 Aligned_cols=58 Identities=12% Similarity=0.019 Sum_probs=36.0
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCC---chhhhhccccCCcHHHh-hccccccee
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPP---VLEEMTRSNLSLPLYDL-MDKVAKDIL 240 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~---~~~~~~~~~l~~~l~~l-v~~~~~~~~ 240 (278)
+..++++++.|+.+|-+.|..+.+...+...+ +|...+. .+.+ =.++|++. +++| ..|
T Consensus 29 ~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL------~~~~~g~~~~~L~~-----D~~tL~~Y~i~~g--sti 90 (95)
T 2kjr_A 29 AFEVKLAKDLTVAQLKTKLEILTGGCAGTMKV------QVFKGDTCVSTMDN-----NDAQLGYYANSDG--LRL 90 (95)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHCSCTTTEEE------EEEETTEEEEECCC-----TTSBHHHHCCSSS--CEE
T ss_pred EEEEEeCccCHHHHHHHHHHHHHCcCHHHeEE------EEecCCcccceeCC-----CCCCHhHCCcCCC--CEE
Confidence 45677778899999999999987433332223 2321111 1211 14689999 9999 455
No 32
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=42.78 E-value=60 Score=23.27 Aligned_cols=63 Identities=25% Similarity=0.207 Sum_probs=39.4
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEee--CCC---chhhhhccccCCcHHHh-hcccccceeeec
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQ--APP---VLEEMTRSNLSLPLYDL-MDKVAKDILHVT 243 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~--~~~---~~~~~~~~~l~~~l~~l-v~~~~~~~~~~~ 243 (278)
.....++.++|+++|-..+.+.++.......+. |.. .+. .++ +=.++|..+ +++| +.|
T Consensus 24 ~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~------~~~~~~~~~~~~L~-----~d~~~L~~y~i~~G--~~I--- 87 (97)
T 1wjn_A 24 ILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLS------YESSKMPGREIELE-----NDLQPLQFYSVENG--DCL--- 87 (97)
T ss_dssp CEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEE------EECTTSCSCEEECC-----CSSSBSGGGTCCTT--CEE---
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCChhHeEEE------EEcCCCCceeeccC-----CCcccHhhcCCCCC--CEE---
Confidence 556677788999999999999984443333332 221 110 111 224678888 9999 566
Q ss_pred cccccccC
Q 023706 244 GVTGQSDK 251 (278)
Q Consensus 244 ~~~~v~d~ 251 (278)
.|.|.
T Consensus 88 ---~V~d~ 92 (97)
T 1wjn_A 88 ---LVRWS 92 (97)
T ss_dssp ---EEECC
T ss_pred ---EEEec
Confidence 66663
No 33
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=42.43 E-value=25 Score=25.83 Aligned_cols=36 Identities=6% Similarity=0.114 Sum_probs=25.3
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCC
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRG 205 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~ 205 (278)
..++.+.+++||.|+++...++++++-+...+.+++
T Consensus 21 r~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~ 56 (90)
T 2al3_A 21 RHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQR 56 (90)
T ss_dssp EEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETT
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCC
Confidence 455666678999999999999986554444444443
No 34
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=42.21 E-value=63 Score=24.57 Aligned_cols=53 Identities=21% Similarity=0.371 Sum_probs=34.0
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
...++++++.|+.+|-+.+.++.++..+...+.++.+ .+++ +++|+++ +++|+
T Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~--------~L~d------~~tL~~~~i~~~~ 65 (152)
T 3b08_A 12 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK--------QLED------GRTLSDYNIQKES 65 (152)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTE--------ECCT------TSBTGGGTCCTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCe--------ECcC------cccHHHhccCCCC
Confidence 3457778889999999999998744333333332221 2222 3678888 88884
No 35
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=41.18 E-value=26 Score=23.36 Aligned_cols=53 Identities=19% Similarity=0.368 Sum_probs=33.5
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
...++++++.|+.+|-+.+.++.++..+...+.++.+ .+++ +++|+++ +++|+
T Consensus 12 ~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~--------~L~d------~~tL~~~~i~~g~ 65 (76)
T 3a9j_A 12 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK--------QLED------GRTLSDYNIQRES 65 (76)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTE--------ECCT------TCBTGGGTCCTTC
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCe--------ECCC------CCcHHHcCCCCCC
Confidence 3457778889999999999988743333333333221 2222 3678888 88883
No 36
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=40.79 E-value=36 Score=25.61 Aligned_cols=36 Identities=3% Similarity=0.007 Sum_probs=27.2
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCC
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRG 205 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~ 205 (278)
...+++.++.|+.+|-+.+.+++++..+...+..|.
T Consensus 38 ~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~gg 73 (105)
T 4dbg_A 38 TIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQ 73 (105)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETT
T ss_pred eEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccC
Confidence 356778889999999999999986666555444443
No 37
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=40.27 E-value=25 Score=24.14 Aligned_cols=51 Identities=16% Similarity=0.309 Sum_probs=32.3
Q ss_pred EEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hccc
Q 023706 171 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKV 235 (278)
Q Consensus 171 ~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~ 235 (278)
..++++++.|+.+|.+.+.++.++..+... ++|.. ..+++ +++|+++ ++++
T Consensus 16 ~~~~v~~~~tV~~lK~~i~~~~~ip~~~qr------L~~~g--~~L~d------~~tL~~~~i~~~ 67 (85)
T 3n3k_B 16 IILEVEPSDTIENVKAKIQDKEGIPPDQQR------LIFAG--KQLED------GRTLSDYNIHNH 67 (85)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEE------EEETB--EECCT------TCBTTTTTCCTT
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCCHHHEE------EEECC--eECCC------CCCHHHCCCCCC
Confidence 456777889999999999998744444332 33321 12222 3567777 7777
No 38
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=39.74 E-value=28 Score=23.17 Aligned_cols=53 Identities=13% Similarity=0.252 Sum_probs=33.5
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
...++++++.|+.+|-+.+.++.++..+...+.++. ..+++ +++|+++ +++|+
T Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g--------~~L~d------~~tL~~~~i~~g~ 65 (76)
T 1ndd_A 12 EIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSG--------KQMND------EKTAADYKILGGS 65 (76)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETT--------EECCT------TSBGGGGTCCTTC
T ss_pred EEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECC--------EECCC------CCcHHHcCCCCCC
Confidence 345777888999999999998874333333333222 12222 3578888 88884
No 39
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=38.63 E-value=23 Score=25.53 Aligned_cols=55 Identities=7% Similarity=0.063 Sum_probs=34.6
Q ss_pred EEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hccccccee
Q 023706 171 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 240 (278)
Q Consensus 171 ~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~~~~~ 240 (278)
.++.++.++|+.+++..+.++. +++.. .....+|.. .|-+=+.++.|+ +++| +.+
T Consensus 22 l~f~I~~~t~v~kLi~ayc~~~--~I~~~---~~IrllFDG--------dRLdp~~tp~DlemeD~--D~I 77 (82)
T 3goe_A 22 LRLSIPVDFTVKDLIKRYCTEV--KISFH---ERIRLEFEG--------EWLDPNDQVQSTELEDE--DQV 77 (82)
T ss_dssp EEEEEETTSBHHHHHHHHHHHH--TCCCC---TTCEEEETT--------EECCTTSBGGGSSCCTT--CEE
T ss_pred eEEEecCCCCHHHHHHHHHHHc--CCCcC---ceEEEEEcC--------cccCccCChhhhCCcCC--cee
Confidence 5677778899999999999986 44322 011233321 122335677888 8888 444
No 40
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=38.57 E-value=28 Score=25.25 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=35.1
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hccccccee
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 240 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~~~~~ 240 (278)
...+.++++.+|+.+.+.+.++. ++... ..+.+|.. ..+ +-+.+..+| +++| +.|
T Consensus 17 ~v~~~vk~~t~l~kl~~~y~~~~--gi~~~----~~rf~FdG--~~l------~~~~Tp~dl~medg--D~I 72 (91)
T 2io0_B 17 VVQFKIKRHTPLSKLMKAYCERQ--GLSMR----QIRFRFDG--QPI------NETDTPAQLEMEDE--DTI 72 (91)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHT--TCCST----TEEEEETT--EEC------CTTCCTTTTTCCTT--EEE
T ss_pred EEEEEECCCChHHHHHHHHHHHh--CCCcc----cEEEEECC--EEc------CCCCCHHHcCCCCC--CEE
Confidence 46678888899999999999987 44321 11333321 111 234677888 8888 455
No 41
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.08 E-value=33 Score=23.23 Aligned_cols=53 Identities=11% Similarity=0.206 Sum_probs=33.6
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
...++++.+.|+.+|-+.+.++.++..+.. +++|. ...+++ +++|+++ +++|+
T Consensus 19 ~~~~~v~~~~tV~~LK~~i~~~~~i~~~~q------rL~~~--gk~L~d------~~tL~~~~i~~g~ 72 (81)
T 2dzi_A 19 ECSLQVPEDELVSTLKQLVSEKLNVPVRQQ------RLLFK--GKALAD------GKRLSDYSIGPNS 72 (81)
T ss_dssp EEEEEECSSCBHHHHHHHHHHHTCCCTTTC------EEEET--TEECCT------TSBGGGGTCCSSB
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHE------EEEEC--CeECCC------CCcHHHcCCCCCC
Confidence 345778888999999999998874333322 23332 122322 3678888 88884
No 42
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=37.94 E-value=31 Score=23.60 Aligned_cols=53 Identities=17% Similarity=0.304 Sum_probs=33.3
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
...++++++.|+.+|-+.+.++.++..+.. +++|.. ..+++ +++|+++ +++++
T Consensus 15 ~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q------rL~~~g--~~L~d------~~tL~~~~i~~~~ 68 (85)
T 3mtn_B 15 TITLEVEPSDTIENVKAKIQDKEGIPPDQQ------RLIFAG--KQLED------GRTLSDYNIQKWS 68 (85)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCGGGC------EEEETT--EECCT------TSBTGGGTCCTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCcChHHE------EEEECC--EECCC------CCCHHHcCCCCCC
Confidence 345778888999999999999874433322 233311 12322 3677788 77773
No 43
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=37.67 E-value=32 Score=24.92 Aligned_cols=55 Identities=16% Similarity=0.179 Sum_probs=34.9
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hccccccee
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 240 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~~~~~ 240 (278)
...+.++++.+|+.|.+.+.++.++..+. .+.+|.. ..+ +-+.+..+| +++| +.|
T Consensus 29 ~i~~~v~~~t~l~kl~~~y~~~~gi~~~~------~rf~fdG--~~l------~~~~Tp~dl~medg--D~I 84 (93)
T 2d07_B 29 VVQFKIKRHTPLSKLMKAYCERQGLSMRQ------IRFRFDG--QPI------NETDTPAQLEMEDE--DTI 84 (93)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHTCCGGG------EEEEETT--EEC------CTTCCTTTTTCCTT--EEE
T ss_pred EEEEEEccCCHHHHHHHHHHHHhCCCccc------eEEEECC--EEc------CCCCCHHHcCCCCC--CEE
Confidence 35677888899999999999987433321 1233321 111 234677888 8888 455
No 44
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=36.70 E-value=29 Score=24.95 Aligned_cols=58 Identities=16% Similarity=-0.016 Sum_probs=35.8
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeC-CC---chhhhhccccCCcHHHh-hccccccee
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQA-PP---VLEEMTRSNLSLPLYDL-MDKVAKDIL 240 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~-~~---~~~~~~~~~l~~~l~~l-v~~~~~~~~ 240 (278)
+..++++++.|+.+|-+.|.++.++..+.. +++|... .. .+.+ =.++|.+. +++| ..|
T Consensus 20 ~~~~~v~~~~TV~~lK~ki~~~~gip~~~q------rL~~~~~~g~~~~~l~~-----D~~tL~~y~i~~g--~~l 82 (95)
T 1v6e_A 20 RSEKRYSRSLTIAEFKCKLELVVGSPASCM------ELELYGADDKFYSKLDQ-----EDALLGSYPVDDG--CRI 82 (95)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHTCSCTTTC------BCEEECSSSCEEEECCC-----SSSBTTSSSCCTT--CEE
T ss_pred eEEEEcCccCHHHHHHHHHHHHHCCCHHHe------EEEEeCCCCccccccCC-----CcCCHhHCCCCCC--CEE
Confidence 466788889999999999999874333322 3333210 01 1111 14678888 8888 456
No 45
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=36.55 E-value=31 Score=25.15 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=35.0
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hccccccee
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 240 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~~~~~ 240 (278)
...++++++.+++.+.+.+.++. ++... ..+.+|.. ..+ +-++++.++ +++| +.|
T Consensus 19 ~i~~~v~~~t~l~kl~~~y~~~~--gi~~~----~~rf~FdG--~~l------~~~~Tp~dl~medg--D~I 74 (94)
T 2io1_B 19 VVQFKIKRHTPLSKLMKAYCERQ--GLSMR----QIRFRFDG--QPI------NETDTPAQLEMEDE--DTI 74 (94)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHH--TCCGG----GEEEEETT--EEC------CTTCCTTTTTCCTT--CEE
T ss_pred EEEEEECCCCHHHHHHHHHHHHh--CCCcc----cEEEEECC--EEc------CCCCCHHHcCCCCC--CEE
Confidence 45677888899999999999987 44321 11333421 112 224677888 8888 455
No 46
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=36.21 E-value=94 Score=24.55 Aligned_cols=53 Identities=19% Similarity=0.347 Sum_probs=34.6
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
...++++++.|+.+|-+.+.++.++..+...+.++. ..++| .++|+++ +++|+
T Consensus 32 ~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g--------~~L~d------~~tL~~~~i~~~~ 85 (172)
T 3u30_A 32 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG--------KQLED------GRTLSDYNIQKES 85 (172)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETT--------EECCT------TCBTGGGTCCTTC
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECC--------ccccc------cCCHhHcCCcccc
Confidence 345778888999999999999874444433333322 12332 4678888 88884
No 47
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=36.02 E-value=37 Score=23.08 Aligned_cols=53 Identities=19% Similarity=0.251 Sum_probs=34.2
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
...++++++.|+.+|-+.+.++.++..+...+.+++ ..++| +++|+++ +++|+
T Consensus 16 ~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G--------~~L~d------~~tL~~~~i~~~~ 69 (79)
T 3phx_B 16 SSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEG--------KPLED------QLPLGEYGLKPLS 69 (79)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETT--------EECCT------TSBGGGGTCCTTC
T ss_pred EEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECC--------EECCC------CCcHHHCCCCCCC
Confidence 345788888999999999998874443433332222 22332 3678888 88884
No 48
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=35.37 E-value=40 Score=23.31 Aligned_cols=53 Identities=11% Similarity=0.117 Sum_probs=33.7
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
...++++++.|+.+|-+.+.++.++..+... ++|. . ..++| +++|+++ +++|+
T Consensus 19 ~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qr------L~~~-G-k~L~d------~~tL~~~~i~~g~ 72 (87)
T 1wh3_A 19 SYAYAINPNSFILGLKQQIEDQQGLPKKQQQ------LEFQ-G-QVLQD------WLGLGIYGIQDSD 72 (87)
T ss_dssp EEEEEECSSSBHHHHHHHHHHHTCCCTTTEE------EEET-T-EECCS------SSBHHHHTCCTTE
T ss_pred EEEEEeCCCChHHHHHHHHHHHhCCChHHEE------EEEC-C-EEccC------CCCHHHCCCCCCC
Confidence 3457788889999999999998643333222 3331 1 12222 3688888 88883
No 49
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=34.81 E-value=36 Score=24.01 Aligned_cols=53 Identities=17% Similarity=0.307 Sum_probs=34.2
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
...++++++.|+.+|-+.+.++.++..+.. +++|.. +.++| +++|.++ +++|+
T Consensus 29 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~q------rL~~~G--k~L~D------~~tL~~~gi~~g~ 82 (91)
T 3v6c_B 29 HITLEVEPSDTIENVKAKIQDKEGIPPDQQ------RLIFAG--KQLED------GRTLSDYNIQKES 82 (91)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCGGGC------EEEETT--EECCT------TCBTGGGTCCTTC
T ss_pred EEEEEECCCCCHHHHHHHHHhhhCCChhhE------EEEECC--eECCC------cCcHHHCCCCCCC
Confidence 345778888999999999999874443332 333321 22332 3678888 88884
No 50
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=34.45 E-value=32 Score=23.77 Aligned_cols=53 Identities=11% Similarity=0.206 Sum_probs=34.4
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
...++++++.|+.+|-+.+.++.++..+.. +++|.. ..++| +++|+++ +++|+
T Consensus 24 ~~~~~v~~~~tV~~lK~~i~~~~gip~~~q------rL~~~G--~~L~d------~~tL~~~~i~~~~ 77 (88)
T 3dbh_I 24 EIEIDIEPTDKVERIKERVEEKEGIPPQQQ------RLIYSG--KQMND------EKTAADYKILGGS 77 (88)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCGGGC------CEEETT--EECCT------TSBGGGGTCCTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCcCHHHE------EEEECC--eECCC------CCcHHHcCCCCCC
Confidence 346788888999999999998874333322 344421 12322 4678888 88883
No 51
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=34.20 E-value=52 Score=23.60 Aligned_cols=52 Identities=13% Similarity=0.273 Sum_probs=33.6
Q ss_pred EEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccC-CcHHHh-hcccc
Q 023706 171 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLS-LPLYDL-MDKVA 236 (278)
Q Consensus 171 ~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~-~~l~~l-v~~~~ 236 (278)
..++++++.|+.+|-+.|.++.++..+...+.++.+ .++| + ++|+++ +++|+
T Consensus 27 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk--------~L~D------~~~tL~~ygI~~gs 80 (94)
T 2kan_A 27 FTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGI--------ELAD------DYRNLNEYGITEFS 80 (94)
T ss_dssp EEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTE--------EECC------TTSBHHHHTCCTTE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCE--------ECCC------CcccHHHCCCCCCC
Confidence 456777889999999999998744433333333222 2322 2 678888 88883
No 52
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=34.16 E-value=1e+02 Score=21.51 Aligned_cols=53 Identities=15% Similarity=0.228 Sum_probs=32.3
Q ss_pred EEEEeCCC-----CCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 171 VLIELDTS-----VTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 171 ~~i~i~~~-----~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
..++++.+ .|+.+|-+.|.++.++..+.. +++|. ...+++ -.++|.++ +++|+
T Consensus 19 ~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~q------rL~~~--Gk~L~D-----~~~~L~~~~i~~g~ 77 (92)
T 1wxv_A 19 HDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQ------KLIFK--GKSLKE-----METPLSALGIQDGC 77 (92)
T ss_dssp EEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTC------EEEET--TEEECC-----SSSBHHHHTCCSSE
T ss_pred EEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHE------EEEEC--CeecCC-----CcccHHHCCCCCCC
Confidence 35677764 899999999998864333322 33332 112222 13578888 88883
No 53
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=33.91 E-value=36 Score=24.07 Aligned_cols=52 Identities=21% Similarity=0.385 Sum_probs=33.2
Q ss_pred EEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 171 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 171 ~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
..++++++.|+.+|-+.+.++.++..+...+.++.+ .++| +++|.++ +++|+
T Consensus 14 ~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~--------~L~d------~~tL~~~~i~~~~ 66 (96)
T 3k9o_B 14 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK--------QLED------GRTLSDYNIQKES 66 (96)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTE--------ECCT------TSBTGGGTCCTTC
T ss_pred EEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCE--------ECCC------CCcHHHcCCCCCC
Confidence 456777889999999999998744444333332221 2322 3578888 77773
No 54
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=33.47 E-value=52 Score=23.92 Aligned_cols=52 Identities=12% Similarity=0.160 Sum_probs=34.0
Q ss_pred EEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 171 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 171 ~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
..++++++.|+.+|-+.|.++.++..+...+.++.+. ++| +++|.++ +++|+
T Consensus 37 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~--------L~D------~~tL~~~gI~~g~ 89 (101)
T 2klc_A 37 EEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKI--------LKD------QDTLSQHGIHDGL 89 (101)
T ss_dssp EEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEE--------ECT------TCCTGGGTCCTTC
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEE--------CCC------cCcHHHcCCCCCC
Confidence 4578888899999999999887444443333333222 222 3577888 88883
No 55
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=33.46 E-value=50 Score=24.88 Aligned_cols=55 Identities=13% Similarity=0.285 Sum_probs=36.5
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hccccccee
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 240 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~~~~~ 240 (278)
...+.++++.+|+.|.+.+.++. ++... ..+.+|.. ..+ +-+++..+| +++| +.|
T Consensus 38 ~i~fkVk~~t~l~kL~~ay~ek~--gi~~~----~~rfiFdG--~~L------~~~~Tp~dl~mEDg--D~I 93 (110)
T 2k8h_A 38 EMFFRIKSRTALKKLIDTYCKKQ--GISRN----SVRFLFDG--TPI------DETKTPEELGMEDD--DVI 93 (110)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHH--TCCSS----SCEEESSS--CBC------CSSSHHHHHHCSSE--EEE
T ss_pred EEEEEECCCChHHHHHHHHHHHh--CCCcc----cEEEEECC--EEc------CCCCCHHHcCCCCC--CEE
Confidence 46788888899999999999987 43321 12333321 122 235789999 9999 455
No 56
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=33.25 E-value=43 Score=23.96 Aligned_cols=52 Identities=19% Similarity=0.361 Sum_probs=33.6
Q ss_pred EEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 171 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 171 ~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
..++++++.|+.+|-+.+.++.++..+...+.++. ..+++ +++|+++ +++|+
T Consensus 13 ~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~G--------k~L~D------~~tL~~~gi~~g~ 65 (98)
T 1yx5_B 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG--------KQLED------GRTLSDYNIQKES 65 (98)
T ss_dssp EEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETT--------EECCT------TSBTGGGTCCTTC
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECC--------EECCC------CCCHHHcCCCCCC
Confidence 45677778999999999999874333333333222 12322 4678888 88884
No 57
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=33.23 E-value=76 Score=23.36 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=35.5
Q ss_pred EEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hccccccee
Q 023706 171 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 240 (278)
Q Consensus 171 ~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~~~~~ 240 (278)
..+.++++.+|+.|++.+.++. ++... ..+.+|.. .+-+-+.+..+| +++| ++|
T Consensus 39 v~fkIk~~t~l~kLm~aY~~~~--g~~~~----~vrF~FDG--------~rI~~~~TP~dLdMEDg--D~I 93 (97)
T 2jxx_A 39 LEVSLSRDSPLKTLMSHYEEAM--GLSGR----KLSFFFDG--------TKLSGRELPADLGMESG--DLI 93 (97)
T ss_dssp EEEEEETTSCHHHHHHHHHHHT--TCSSS----CCEEEETT--------EECCSCSCHHHHTCCTT--EEE
T ss_pred EEEEECCCChHHHHHHHHHHHH--CCCcc----cEEEEECC--------EEcCCCCCHHHcCCCCC--CEE
Confidence 4677788899999999999987 44321 11233321 112345788899 9999 565
No 58
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=32.97 E-value=38 Score=23.87 Aligned_cols=52 Identities=12% Similarity=0.215 Sum_probs=32.8
Q ss_pred EEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 171 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 171 ~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
..++++++.|+.+|-+.+.++.++..+.. +++|.. ..++| +++|+++ +++|+
T Consensus 13 ~~l~v~~~~TV~~LK~~I~~~~gip~~~q------rLi~~G--k~L~D------~~tL~~~~i~~g~ 65 (88)
T 4fbj_B 13 IEIDIEPTDKVERIKERVEEKEGIPPQQQ------RLIYSG--KQMND------EKTAADYKILGGS 65 (88)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGC------EEEETT--EECCT------TSBTTTTTCCTTC
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcChhHE------EEEECC--eECCC------CCcHHHcCCCCCC
Confidence 45677778899999999998874433332 333421 22322 3577777 77773
No 59
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.27 E-value=43 Score=24.48 Aligned_cols=53 Identities=13% Similarity=0.250 Sum_probs=34.0
Q ss_pred EEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hccc
Q 023706 172 LIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKV 235 (278)
Q Consensus 172 ~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~ 235 (278)
-+.+++.++|++++-.|.+|-++..+...+.... .....+ -|+++|.|+ ++.-
T Consensus 24 VvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~-----~~~e~L------dLskSLndlgirEL 77 (91)
T 2daj_A 24 IVRVSPHASLQELAPIICSKCEFDPLHTLLLKDY-----QSQEPL------DLTKSLNDLGLREL 77 (91)
T ss_dssp EEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCS-----SCCCBC------CTTSCHHHHTCSEE
T ss_pred EEEeCCCCcHHHHHHHHhhcccCChhhEEEecCC-----CCCccc------chhcchhhhhhhhh
Confidence 3567778999999999999875555543333321 111112 378899998 6543
No 60
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=31.99 E-value=40 Score=23.70 Aligned_cols=52 Identities=17% Similarity=0.323 Sum_probs=32.6
Q ss_pred EEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 171 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 171 ~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
..++++++.|+.+|-+.+.++.++..+.. +++|.. ..+++ +++|+++ +++|+
T Consensus 22 ~~l~v~~~~TV~~LK~~I~~~~gip~~~q------rL~~~G--k~L~D------~~tL~~~gi~~g~ 74 (88)
T 1sif_A 22 FTVEMEPSDTIENLKAKIQDKEGIPPDQQ------RLIFAG--KQLED------GRTLSDYNIQKES 74 (88)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGC------EEEETT--EECCT------TSBSGGGTCCTTC
T ss_pred EEEEECCCChHHHHHHHHHHHHCcChhhE------EEEECC--EECCC------CCcHHHcCCCCCC
Confidence 45677778999999999999874333322 333321 12222 3677888 77773
No 61
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=31.76 E-value=40 Score=24.29 Aligned_cols=52 Identities=15% Similarity=0.332 Sum_probs=33.2
Q ss_pred EEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 171 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 171 ~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
..++++++.|+.+|-+.|.++.++..+.. +++|.. +.++| +++|+++ +++|+
T Consensus 35 ~~l~v~~~~TV~~LK~~I~~~~gip~~~q------rLi~~G--k~L~D------~~tL~~~~i~~g~ 87 (98)
T 4hcn_B 35 ITLEVESSDTIDNVKSKIQDKEGIPPDQQ------RLIFAG--KQLED------GRTLSDYNIQKES 87 (98)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGC------EEEETT--EECCT------TCBSGGGTCCTTE
T ss_pred EEEEECCCCcHHHHHHHHHHHhCCChhHE------EEEECC--EECCC------CCcHHHCCCCCCC
Confidence 45677778999999999999874333332 333321 22332 3578888 88883
No 62
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=31.52 E-value=1.7e+02 Score=22.24 Aligned_cols=27 Identities=15% Similarity=0.135 Sum_probs=20.0
Q ss_pred EEEEeCCCCCHHHHHHHHHcCccCcce
Q 023706 171 VLIELDTSVTLEKFINLLEEHPKLQLA 197 (278)
Q Consensus 171 ~~i~i~~~~TL~~li~~l~~~~~~~l~ 197 (278)
..++++++.|+.++-..|..+.++..+
T Consensus 14 i~lev~~sdTV~~lK~kI~~~egIP~~ 40 (118)
T 2fnj_B 14 IFTDAKESSTVFELKRIVEGILKRPPE 40 (118)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHCCCGG
T ss_pred EEEEeCCcChHHHHHHHHHHHhCCCHH
Confidence 446777788999999999988643333
No 63
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=31.46 E-value=66 Score=22.98 Aligned_cols=57 Identities=14% Similarity=0.128 Sum_probs=35.7
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcce---eeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hccccccee
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLA---KASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 240 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~---~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~~~~~ 240 (278)
...+.++..+|+++|++.+.+.|++... -+.+...++-+.... +..|+|. +.+| +.|
T Consensus 18 ~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~------------~~~L~d~~ItnG--D~L 78 (81)
T 2bps_A 18 VFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSG------------ECKLSDCGITNG--DRL 78 (81)
T ss_dssp EEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEET------------TSBTGGGTCCTT--CEE
T ss_pred eEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcC------------CCEEeeCCcCCC--CEE
Confidence 3556777789999999999999854432 133444333222221 2456677 8899 455
No 64
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=30.99 E-value=40 Score=25.07 Aligned_cols=53 Identities=13% Similarity=0.140 Sum_probs=36.3
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
..+++++++.|+.+|-+.|.++.++..+...+.++.+. ++| .++|++. +++++
T Consensus 40 ~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~--------L~D------~~TL~dygI~~gs 93 (100)
T 1uh6_A 40 KVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTI--------FKD------HVSLGDYEIHDGM 93 (100)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEE--------CCS------SCBHHHHTCCTTE
T ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEE--------CCC------CCCHHHcCCCCCC
Confidence 46678888899999999999987555554444444322 222 3678888 78873
No 65
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=30.80 E-value=58 Score=24.86 Aligned_cols=52 Identities=13% Similarity=0.225 Sum_probs=33.3
Q ss_pred EEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 171 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 171 ~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
..++++.+.|+.+|-+.|.++.++..+...|.++.+ .++| +++|.++ +++|+
T Consensus 44 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk--------~L~D------~~tL~dygI~~gs 96 (125)
T 1j8c_A 44 EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGK--------ILKD------QDTLIQHGIHDGL 96 (125)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTE--------EEST------TSCGGGTTCSSSE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCE--------EcCC------CCCHHHcCCCCCC
Confidence 456778889999999999998744433333333322 2322 3577888 77773
No 66
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=30.73 E-value=58 Score=23.41 Aligned_cols=62 Identities=8% Similarity=0.086 Sum_probs=33.8
Q ss_pred cCCCCccCC----------C-cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcH
Q 023706 160 KDKDCLVCG----------P-GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPL 228 (278)
Q Consensus 160 ~~p~C~vC~----------~-~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l 228 (278)
-.+.|+.|. . ...+.++.+.. ..+.+.+..+..-.+|.|..+++.+...+ +.++ |..+|
T Consensus 10 s~~~Cp~C~~aK~~L~~~gi~y~~idi~~d~~---~~~~~~~~~~G~~tVP~I~i~Dg~~l~~~--~~~e-----l~~~L 79 (92)
T 2lqo_A 10 TTSWCGYCLRLKTALTANRIAYDEVDIEHNRA---AAEFVGSVNGGNRTVPTVKFADGSTLTNP--SADE-----VKAKL 79 (92)
T ss_dssp ECTTCSSHHHHHHHHHHTTCCCEEEETTTCHH---HHHHHHHHSSSSSCSCEEEETTSCEEESC--CHHH-----HHHHH
T ss_pred cCCCCHhHHHHHHHHHhcCCceEEEEcCCCHH---HHHHHHHHcCCCCEeCEEEEeCCEEEeCC--CHHH-----HHHHH
Confidence 346799994 2 55666665533 33444433222457889988765433321 2232 45567
Q ss_pred HHh
Q 023706 229 YDL 231 (278)
Q Consensus 229 ~~l 231 (278)
.++
T Consensus 80 ~el 82 (92)
T 2lqo_A 80 VKI 82 (92)
T ss_dssp HHH
T ss_pred HHh
Confidence 777
No 67
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=30.67 E-value=39 Score=23.63 Aligned_cols=27 Identities=4% Similarity=0.117 Sum_probs=20.7
Q ss_pred EEEEeCCCCCHHHHHHHHHcCccCcce
Q 023706 171 VLIELDTSVTLEKFINLLEEHPKLQLA 197 (278)
Q Consensus 171 ~~i~i~~~~TL~~li~~l~~~~~~~l~ 197 (278)
..++++.+.|+.+|-+.+.++.++..+
T Consensus 18 ~~~~v~~~~tV~~lK~~i~~~~gip~~ 44 (90)
T 4dwf_A 18 RTFIVGAQMNVKEFKEHIAASVSIPSE 44 (90)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHTCCGG
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCHH
Confidence 456777788999999999988744433
No 68
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=30.05 E-value=37 Score=25.30 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=36.2
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hccccccee
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 240 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~~~~~ 240 (278)
...+.++++.+|+.|.+.+.++. ++... ..+.+|.. ..+ +-+.+..+| +++| +.|
T Consensus 36 ~i~~kVk~~t~l~kL~~~y~ek~--gi~~~----~~rf~FdG--~~l------~~~~Tp~dl~medg--D~I 91 (104)
T 1wz0_A 36 VVQFKIKRHTPLSKLMKAYCERQ--GLSMR----QIRFRFDG--QPI------NETDTPAQLEMEDE--DTI 91 (104)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH--TCCTT----TSCEESSS--SBC------CTTSCTTTTTCCTT--EEE
T ss_pred EEEEEEcCCChHHHHHHHHHHHh--CCCcc----eEEEEECC--EEc------CCCCCHHHcCCCCC--CEE
Confidence 46788888899999999999987 44321 22344422 122 234678888 8999 555
No 69
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=29.86 E-value=44 Score=25.07 Aligned_cols=55 Identities=15% Similarity=0.289 Sum_probs=34.9
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hccccccee
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 240 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~~~~~ 240 (278)
...++++.+.+|+.|.+.+.++.++... ..+.+|.. ..+ +-+++..+| +++| +.|
T Consensus 42 ~i~fkIk~tt~l~kL~~ay~ek~gi~~~------~~rF~FdG--~rl------~~~~Tp~dl~medg--D~I 97 (106)
T 2eke_C 42 EIFFKIKKTTPLRRLMEAFAKRQGKEMD------SLRFLYDG--IRI------QADQTPEDLDMEDN--DII 97 (106)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHTCCGG------GEEEEETT--EEC------CTTCCTTTTTCCTT--EEE
T ss_pred EEEEEeCCCCHHHHHHHHHHHHhCCCcc------cEEEEECC--eEc------CCCCCHHHcCCCCC--CEE
Confidence 4567778889999999999998743322 11233321 111 234678888 8888 455
No 70
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=29.67 E-value=47 Score=23.31 Aligned_cols=52 Identities=15% Similarity=0.172 Sum_probs=32.5
Q ss_pred EEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 171 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 171 ~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
..++++++.|+.+|-+.+.++.++..+.. +++|. .+.++| +++|+++ +++|+
T Consensus 24 ~~l~v~~~~TV~~LK~~I~~~~gip~~~q------rL~~~--Gk~L~D------~~tL~~~gi~~g~ 76 (85)
T 2kd0_A 24 IPLSVSPDCTVKDLKSQLQPITNVLPRGQ------KLIFK--GKVLVE------TSTLKQSDVGSGA 76 (85)
T ss_dssp EEEEECTTSBHHHHHHHHHHHHCCCTTTC------EEEET--TEECCT------TCBTTTTTCCTTE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChHHE------EEEEC--CeECCC------cCCHHHCCCCCCC
Confidence 45677778999999999998863333222 33332 122322 3678888 88883
No 71
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=29.51 E-value=55 Score=22.03 Aligned_cols=51 Identities=18% Similarity=0.316 Sum_probs=32.5
Q ss_pred EEE-eCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 172 LIE-LDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 172 ~i~-i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
.++ ++++.|+.+|-+.+.++.++..+...+.++. ..+++ +++|+++ +++|+
T Consensus 17 ~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g--------~~L~d------~~tL~~~~i~~g~ 69 (78)
T 2faz_A 17 TVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRG--------KQMED------GHTLFDYEVRLND 69 (78)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETT--------EECCT------TCBTTTTTCCTTC
T ss_pred EEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECC--------EECCC------CCCHHHcCCCCCC
Confidence 577 8888999999999998874333333333222 12222 3577777 77773
No 72
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=28.68 E-value=52 Score=24.18 Aligned_cols=52 Identities=19% Similarity=0.223 Sum_probs=33.1
Q ss_pred EEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 171 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 171 ~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
..++++++.|+.+|-+.|.++.++..+.. +++|.. +.++| +++|+++ +++|+
T Consensus 14 ~~l~v~~~~TV~~LK~~I~~~~gip~~~Q------rLi~~G--k~L~D------~~tL~~~~i~~g~ 66 (106)
T 3m62_B 14 VPLDLEPSNTILETKTKLAQSISCEESQI------KLIYSG--KVLQD------SKTVSECGLKDGD 66 (106)
T ss_dssp EEECCCTTSBHHHHHHHHHHTTTSCGGGC------EEEETT--EECCT------TSBTTTTTCCTTC
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCChhhE------EEEECC--EECCC------cCCHHHcCCCCCC
Confidence 44566778899999999999874443333 333321 22332 3578888 88884
No 73
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=28.40 E-value=41 Score=24.57 Aligned_cols=50 Identities=8% Similarity=0.135 Sum_probs=32.0
Q ss_pred EEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hccc
Q 023706 172 LIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKV 235 (278)
Q Consensus 172 ~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~ 235 (278)
.++++.+.|+.+|-+.|.++.++..+... ++|. . ..++| +++|.++ +++|
T Consensus 30 ~l~v~~~~TV~~LK~~I~~~~gip~~~qr------Li~~-G-k~L~D------~~tL~~~gi~~g 80 (106)
T 1wx7_A 30 DFSVTDTCTIQQLKEEISQRFKAHPDQLV------LIFA-G-KILKD------PDSLAQCGVRDG 80 (106)
T ss_dssp EEEEETTCCHHHHHHHHHHHHTCCTTTEE------EEET-T-EECCT------TSCHHHHTCCTT
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhhEE------EEEC-C-EECCC------cCcHHHcCCCCC
Confidence 46777788999999999988743333222 3331 1 12322 3678888 8888
No 74
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=28.17 E-value=46 Score=23.12 Aligned_cols=27 Identities=4% Similarity=0.117 Sum_probs=20.6
Q ss_pred EEEEeCCCCCHHHHHHHHHcCccCcce
Q 023706 171 VLIELDTSVTLEKFINLLEEHPKLQLA 197 (278)
Q Consensus 171 ~~i~i~~~~TL~~li~~l~~~~~~~l~ 197 (278)
..++++++.|+.+|-+.+.++.++..+
T Consensus 30 ~~~~v~~~~tV~~lK~~i~~~~gip~~ 56 (88)
T 4eew_A 30 RTFIVGAQMNVKEFKEHIAASVSIPSE 56 (88)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHTCCGG
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCHH
Confidence 456777788999999999988744433
No 75
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=28.11 E-value=47 Score=22.47 Aligned_cols=52 Identities=10% Similarity=0.209 Sum_probs=33.6
Q ss_pred EEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 171 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 171 ~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
..++++++.|+.+|.+.+.++.++..+.. +++|. . ..+++ +++|+++ +++|+
T Consensus 16 ~~~~v~~~~tv~~lk~~i~~~~gi~~~~q------rL~~~-G-~~L~d------~~tl~~~~i~~~~ 68 (79)
T 2uyz_B 16 IHFKVKMTTHLKKLKESYCQRQGVPMNSL------RFLFE-G-QRIAD------NHTPKELGMEEED 68 (79)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHTCCGGGE------EEEET-T-EECCT------TCCHHHHTCCTTE
T ss_pred EEEEECCCChHHHHHHHHHHHHCCCcccE------EEEEC-C-EEeCC------CCCHHHcCCCCCC
Confidence 45677788999999999999864333322 23332 1 22332 3689999 88883
No 76
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=27.70 E-value=53 Score=23.42 Aligned_cols=52 Identities=12% Similarity=0.105 Sum_probs=33.8
Q ss_pred EEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 171 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 171 ~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
..++++++.|+.+|-+.+.++.++..+... ++|. . +.++| +++|+++ +++|+
T Consensus 30 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qr------Li~~-G-k~L~D------~~tL~~y~I~~gs 82 (93)
T 2l7r_A 30 HTFEVTGQETVAQIKAHVASLEGIAPEDQV------VLLA-G-APLED------EATLGQCGVEALT 82 (93)
T ss_dssp EEEECCSSCBHHHHHHHHHHHHTCCGGGCE------EEET-T-EECCT------TSBHHHHTCCSSC
T ss_pred EEEEeCCCCcHHHHHHHHHHHhCcChhHEE------EEEC-C-EECCC------CCcHHHCCCCCCC
Confidence 457788889999999999988643333333 3332 1 12322 3688898 88884
No 77
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=27.03 E-value=48 Score=24.11 Aligned_cols=51 Identities=8% Similarity=0.125 Sum_probs=32.8
Q ss_pred EEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 172 LIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 172 ~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
.++++++.|+.+|-+.|.++.++..+... ++|. . +.++| +++|+++ +++|+
T Consensus 35 ~l~v~~~~TV~~LK~~I~~~~gip~~~Qr------Li~~-G-k~L~D------~~tL~~ygI~~gs 86 (100)
T 1yqb_A 35 DFSVTDTCTIQQLKEEISQRFKAHPDQLV------LIFA-G-KILKD------PDSLAQCGVRDGL 86 (100)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCGGGEE------EEET-T-EECCT------TSBHHHHTCCTTC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhhEE------EEEC-C-EECCC------cCcHHHCCCCCCC
Confidence 46777788999999999988743333322 3332 1 12322 3688888 88884
No 78
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.52 E-value=68 Score=24.70 Aligned_cols=53 Identities=13% Similarity=0.212 Sum_probs=35.8
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
-..+.++.+.|+++|-+.|.++.+...+...|.+.++. ++| +.+|.++ +++|.
T Consensus 28 k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKi--------LKD------~eTL~~~gIk~g~ 81 (118)
T 2daf_A 28 EIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKI--------LKN------NETLVQHGVKPQE 81 (118)
T ss_dssp EEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEE--------ECS------SCCHHHHSCCSSC
T ss_pred EEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeE--------cCC------cchHHHcCCCCCC
Confidence 35677888999999999999987544444444433332 222 4578888 88883
No 79
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=26.33 E-value=66 Score=22.52 Aligned_cols=53 Identities=19% Similarity=0.187 Sum_probs=34.2
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCc-hhhhhccccCCcHHHh-hcccc
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPV-LEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~-~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
...++++++.|+.+|-+.+.++.++..+... ++|. . +. ++| +++|++. +++|+
T Consensus 22 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~Qr------Li~~-G-k~lL~D------~~tL~~y~I~~gs 76 (84)
T 2kk8_A 22 SFELEVDYRDTLLVVKQKIERSQHIPVSKQT------LIVD-G-IVILRE------DLTVEQCQIVPTS 76 (84)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHHTCCGGGEE------EEET-T-EECCCS------SSBHHHHTCCTTS
T ss_pred EEEEEECCCChHHHHHHHHHHHHCcChHHEE------EEEC-C-EEecCC------cCCHHHcCCCCCC
Confidence 3457788889999999999998743333222 3332 1 12 332 4688898 88884
No 80
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=25.99 E-value=59 Score=23.91 Aligned_cols=53 Identities=17% Similarity=0.168 Sum_probs=35.6
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
-..++++++.|+.+|-+.+.++.+...+...+.++.+. ++| .++|.+. +++|+
T Consensus 33 k~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~--------LkD------~~TL~dY~I~dgs 86 (93)
T 3plu_A 33 KVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSV--------LKD------HISLEDYEVHDQT 86 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEE--------CCT------TSBTGGGTCCTTC
T ss_pred EEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEE--------ccC------cCCHHHcCCCCCC
Confidence 46678888899999999999887555554444443322 333 3567777 78884
No 81
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=25.68 E-value=1.6e+02 Score=22.75 Aligned_cols=70 Identities=11% Similarity=0.147 Sum_probs=0.0
Q ss_pred EEEEeCCCCCHHHHHHHHHcCccCcceeeEEE-e-CCcEEEeeCCCchhhhhccccCCcHHHh-hcccccceeeeccccc
Q 023706 171 VLIELDTSVTLEKFINLLEEHPKLQLAKASVT-Y-RGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDILHVTGVTG 247 (278)
Q Consensus 171 ~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~-~-g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~~~~~~~~~~~~ 247 (278)
..++++++.|+.+|-+.+.++.++..+...+. + .. ..++| .++|++. +++| +.+ .
T Consensus 15 ~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g--------~~L~d------~~tL~~y~i~~~--~~l------~ 72 (159)
T 3rt3_B 15 FQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSG--------VALQD------RVPLASQGLGPG--STV------L 72 (159)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTC--------CBCCT------TSCGGGGTCCTT--CEE------E
T ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCC--------CCCCC------CCCHHHcCCCCC--CEE------E
Q ss_pred cccCCcceEEEEEEE
Q 023706 248 QSDKKTSCLRKLRVV 262 (278)
Q Consensus 248 v~d~~~~~~~~l~~~ 262 (278)
+.-...+-.+.+.|+
T Consensus 73 l~~~~~~~~m~i~vk 87 (159)
T 3rt3_B 73 LVVDKSDEPLSILVR 87 (159)
T ss_dssp EEECCCCCCEEEEEE
T ss_pred EEccCCCCcEEEEEE
No 82
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=24.82 E-value=76 Score=21.94 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=33.1
Q ss_pred EEE-EeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 171 VLI-ELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 171 ~~i-~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
..+ +++++.|+.+|-+.+.++.++..+... ++|. . ..+++ +++|.++ +++|+
T Consensus 21 ~~l~~v~~~~tV~~lK~~i~~~~gip~~~qr------L~~~-g-k~L~d------~~tL~~~~i~~g~ 74 (89)
T 1wy8_A 21 CTIEDVSRKATIEELRERVWALFDVRPECQR------LFYR-G-KQLEN------GYTLFDYDVGLND 74 (89)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHSCCCTTTEE------EEET-T-EECCS------SSBHHHHTCCTTC
T ss_pred EEEEecCCCCCHHHHHHHHHHHHCcChhhEE------EEEC-C-eECCC------CCCHHHCCCCCCC
Confidence 457 488889999999999988643333222 3331 1 12222 4688888 88883
No 83
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=24.13 E-value=71 Score=23.60 Aligned_cols=53 Identities=17% Similarity=0.308 Sum_probs=33.6
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
...++++++.|+.+|-+.|.++.++..+.. +++|.. +.+++ +++|+++ +++|+
T Consensus 47 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~Q------rLi~~G--k~L~D------~~tL~~~gI~~gs 100 (111)
T 3vdz_A 47 TITLEVEPSDTIENVKAKIQDKEGIPPDQQ------RLIFAG--KQLED------GRTLSDYNIQKES 100 (111)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCGGGE------EEEETT--EECCT------TSBTTTTTCCTTC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCChHHE------EEEECC--EECCC------CCcHHHCCCCCCC
Confidence 346778888999999999999874433322 333321 12322 3577777 77773
No 84
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=22.92 E-value=85 Score=22.86 Aligned_cols=52 Identities=10% Similarity=0.142 Sum_probs=33.5
Q ss_pred EEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 171 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 171 ~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
..++++.+.|+.+|-+.|.++.++..+.. +++|. + ..+++ .++|.++ +++|+
T Consensus 36 ~~l~v~~~~TV~~LK~~I~~~~gip~~~q------rLi~~-G-k~L~D------~~tL~~ygI~~g~ 88 (106)
T 1ttn_A 36 LKLVVRSTDTVFHMKRRLHAAEGVEPGSQ------RWFFS-G-RPLTD------KMKFEELKIPKDY 88 (106)
T ss_dssp EEEEECTTSHHHHHHHHHHHTTCCCSTTC------EEEET-T-EECCT------TSHHHHCCCSSSC
T ss_pred EEEEeCCCCcHHHHHHHHHHHHCcCcccE------EEEEC-C-EECCC------CCcHHHcCCCCCC
Confidence 45677888999999999999874333322 33332 1 12322 3678888 88884
No 85
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.85 E-value=86 Score=23.06 Aligned_cols=53 Identities=21% Similarity=0.182 Sum_probs=33.4
Q ss_pred EEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 171 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 171 ~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
..++++++.|+.+|-+.|.++. ++... ..+++|.... .++| .++|+++ ++.|+
T Consensus 21 ~~v~v~~~~TV~~LK~~I~~~t--gIpp~----~QkLi~~~~g-kL~D------~~tLs~~~I~~gs 74 (100)
T 2dzm_A 21 VDVVLEDTCTVGEIKQILENEL--QIPVS----KMLLKGWKTG-DVED------STVLKSLHLPKNN 74 (100)
T ss_dssp EEEEEETTSBHHHHHHHHHHHH--CCCTT----TCCEECCSSS-CCCT------TSBHHHHCCCSEE
T ss_pred EEEEECCCCcHHHHHHHHHHHH--CCChh----HeEEEccCCC-CCCC------cCCHHHcCCCCCC
Confidence 4567778889999999999886 33211 2233332221 2332 4689999 88884
No 86
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=22.70 E-value=49 Score=23.51 Aligned_cols=52 Identities=8% Similarity=0.048 Sum_probs=33.7
Q ss_pred EEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 171 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 171 ~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
..++++.+.|+.+|-+.|.++.++..+.. +++|.. ..++| +++|.++ +++|+
T Consensus 29 ~~~~v~~~~TV~~LK~~I~~~~gip~~~q------rL~~~G--k~L~D------~~tL~~~gi~~g~ 81 (96)
T 1wx8_A 29 HEFFLAENSNVRRFKKQISKYLHCNADRL------VLIFTG--KILRD------QDILSQRGILDGS 81 (96)
T ss_dssp EEEEEETTCCHHHHHHHHHHHTCSCTTTB------CCEETT--EECCT------TSCHHHHTCCTTE
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCHHHE------EEEECC--EECCC------cCCHHHCCCCCCC
Confidence 45677778999999999999864333322 344421 22332 3688999 88883
No 87
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=22.57 E-value=98 Score=21.01 Aligned_cols=52 Identities=17% Similarity=0.376 Sum_probs=32.5
Q ss_pred EEEEeCCCCCHHHHHHHHHcC---ccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 171 VLIELDTSVTLEKFINLLEEH---PKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 171 ~~i~i~~~~TL~~li~~l~~~---~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
..++++++.|+.+|-+.+.++ .++..+... ++|. . ..++| +++|+++ +++|+
T Consensus 18 ~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qr------Li~~-G-k~L~D------~~tL~~~~i~~g~ 73 (85)
T 2wyq_A 18 FKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQK------LIYA-G-KILSD------DVPIRDYRIDEKN 73 (85)
T ss_dssp EEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEE------EEET-T-EECCT------TSBGGGGCCCTTS
T ss_pred EEEEECCCCCHHHHHHHHHhhccccCCCHHHeE------EEEC-C-EECcC------CCCHHHcCCCCCC
Confidence 457788889999999999986 323333222 3332 1 22332 3678888 88884
No 88
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=22.11 E-value=20 Score=24.41 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=21.7
Q ss_pred CCCCccCCC-cEEEEeCCCCCHHHHHHHHHcCc
Q 023706 161 DKDCLVCGP-GVLIELDTSVTLEKFINLLEEHP 192 (278)
Q Consensus 161 ~p~C~vC~~-~~~i~i~~~~TL~~li~~l~~~~ 192 (278)
...||+|+. ...-.+.++..|+++|+.+.++.
T Consensus 43 ~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~ 75 (78)
T 1t1h_A 43 HKTCPKSQETLLHAGLTPNYVLKSLIALWCESN 75 (78)
T ss_dssp CCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHS
T ss_pred cCCCCCCcCCCChhhCccCHHHHHHHHHHHHHc
Confidence 566999986 11112223678999999998775
No 89
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=21.68 E-value=71 Score=22.90 Aligned_cols=52 Identities=10% Similarity=0.209 Sum_probs=33.7
Q ss_pred EEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 171 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 171 ~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
..++++++.|+.+|.+.+.++.++..+.. +++|. . ..+++ .++|+++ +++|+
T Consensus 34 ~~l~v~~~~tv~~lK~~i~~~~gip~~~q------rLif~-G-k~L~d------~~tl~dy~i~~g~ 86 (97)
T 1wyw_B 34 IHFKVKMTTHLKKLKESYCQRQGVPMNSL------RFLFE-G-QRIAD------NHTPKELGMEEED 86 (97)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHTCCGGGE------EEEET-T-EECCT------TCCHHHHTCCTTC
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCChhhE------EEEEC-C-eEcCC------CCCHHHCCCCCCC
Confidence 45777788899999999999874333322 23332 1 22332 3689999 88884
No 90
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=21.50 E-value=79 Score=23.25 Aligned_cols=53 Identities=19% Similarity=0.347 Sum_probs=32.9
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
...++++.+.|+.+|-+.+.++.++..+...+.++. ..+++ +++|+++ +++|+
T Consensus 47 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~G--------k~L~D------~~tL~~~gI~~gs 100 (111)
T 2ojr_A 47 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG--------KQLED------GRTLSDYNIQKES 100 (111)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETT--------EECCS------SCBTTTTTCCTTC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECC--------EECCC------CCcHHHcCCCCCC
Confidence 345778888999999999998874333322222222 12222 3577777 77773
No 91
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=20.82 E-value=84 Score=23.38 Aligned_cols=53 Identities=17% Similarity=0.372 Sum_probs=33.4
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hcccc
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVA 236 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~ 236 (278)
...++++++.|+.+|-+.|.++.++..+...+.++.+ .++| +++|+++ +++|+
T Consensus 21 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk--------~L~D------~~tL~~ygI~~gs 74 (114)
T 2kdi_A 21 TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGK--------QLED------GRTLSDYNIQRES 74 (114)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTE--------ECCT------TCBTTTTTCCSSC
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCE--------ECCC------CCcHHHCCCCCCC
Confidence 3456777789999999999998744434333333322 2222 3577777 77774
No 92
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=20.53 E-value=1e+02 Score=21.60 Aligned_cols=22 Identities=9% Similarity=0.006 Sum_probs=18.0
Q ss_pred EEEEeCCCCCHHHHHHHHHcCc
Q 023706 171 VLIELDTSVTLEKFINLLEEHP 192 (278)
Q Consensus 171 ~~i~i~~~~TL~~li~~l~~~~ 192 (278)
..++++++.|+.+|-+.|.++.
T Consensus 22 ~~v~v~~~~TV~~lK~~I~~~~ 43 (93)
T 1wgd_A 22 LELSGDRGWSVGHLKAHLSRVY 43 (93)
T ss_dssp EEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEecCCCCcHHHHHHHHHHHh
Confidence 4566667899999999999875
No 93
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=20.44 E-value=91 Score=21.02 Aligned_cols=55 Identities=16% Similarity=0.153 Sum_probs=35.3
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeCCcEEEeeCCCchhhhhccccCCcHHHh-hccccccee
Q 023706 170 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 240 (278)
Q Consensus 170 ~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~~~~~ 240 (278)
...+.++++.+++.+.+.+.++. ++.. ...+.+|.. ..+ +-+.+..++ +++| +.|
T Consensus 13 ~v~~~v~~~t~l~kl~~~y~~~~--gi~~----~~~rf~fdG--~~l------~~~~Tp~~l~medg--D~I 68 (72)
T 1wm3_A 13 VVQFKIKRHTPLSKLMKAYCERQ--GLSM----RQIRFRFDG--QPI------NETDTPAQLEMEDE--DTI 68 (72)
T ss_dssp EEEEEECTTSCTHHHHHHHHHHH--TCCT----TTCEEEETT--EEC------CTTCCTTTTTCCTT--EEE
T ss_pred EEEEEECCCChHHHHHHHHHHHh--CCCc----ceEEEEECC--EEc------CCCCCHHHcCCCCC--CEE
Confidence 46678888899999999999987 4432 122344421 112 234677788 8888 455
Done!