Your job contains 1 sequence.
>023707
MPVTTCTSSLYLPLSLSSSRVRASFDTQQRLSYNPNAPRKIKKPPLNLNTNSNSNKSDVA
IAKPPTSTVTPTSTDQSVFDLLKHPTQGVVANLDESYMGYERWLPNPPKVGKPRSVFNAA
SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD
VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSILVPCFSFISCQIAKCIMIYSGGCT
NGKLIKGRKTLLFSVHQSPLFAYFYLVIASSSLLVLTY
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 023707
(278 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2091586 - symbol:AT3G13740 species:3702 "Arabi... 527 4.8e-58 2
TAIR|locus:2205687 - symbol:AT1G55140 species:3702 "Arabi... 559 4.3e-54 1
UNIPROTKB|O31418 - symbol:mrnC "Mini-ribonuclease 3" spec... 125 8.7e-08 1
UNIPROTKB|Q3A9P2 - symbol:mrnC "Mini-ribonuclease 3" spec... 120 3.2e-07 1
TIGR_CMR|CHY_2337 - symbol:CHY_2337 "conserved hypothetic... 120 3.2e-07 1
UNIPROTKB|Q97S24 - symbol:mrnC "Mini-ribonuclease 3" spec... 115 1.2e-06 1
UNIPROTKB|Q81VV0 - symbol:mrnC "Mini-ribonuclease 3" spec... 112 2.6e-06 1
TIGR_CMR|BA_0090 - symbol:BA_0090 "conserved hypothetical... 112 2.6e-06 1
>TAIR|locus:2091586 [details] [associations]
symbol:AT3G13740 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR000999
Pfam:PF00636 SMART:SM00535 EMBL:CP002686 GO:GO:0003723
GO:GO:0006396 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
KO:K11145 EMBL:AF386979 EMBL:AY072533 IPI:IPI00537124
RefSeq:NP_566463.1 UniGene:At.19293 ProteinModelPortal:Q94F12
SMR:Q94F12 IntAct:Q94F12 STRING:Q94F12 PRIDE:Q94F12
EnsemblPlants:AT3G13740.1 GeneID:820583 KEGG:ath:AT3G13740
TAIR:At3g13740 InParanoid:Q94F12 OMA:YLTNGKR PhylomeDB:Q94F12
ProtClustDB:CLSN2914991 Genevestigator:Q94F12 Uniprot:Q94F12
Length = 247
Score = 527 (190.6 bits), Expect = 4.8e-58, Sum P(2) = 4.8e-58
Identities = 99/142 (69%), Positives = 121/142 (85%)
Query: 77 SVFDLLKHPT-QGVVANLDESYMGYERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYAR 135
SV DLLK P+ + + ++D++YMGYE W P+PPK+ KPRSVFN ASLA+IGD IYELYAR
Sbjct: 54 SVADLLKRPSSKEITVDVDDTYMGYETWSPSPPKLEKPRSVFNPASLAFIGDSIYELYAR 113
Query: 136 RHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRT 195
RHFLFPPLSIE+YN+RV AVVRCE Q ALL KL++D +L+ EERD++RWGKN+GSA TRT
Sbjct: 114 RHFLFPPLSIEDYNDRVRAVVRCEAQYALLNKLVDDDFLTKEERDILRWGKNLGSARTRT 173
Query: 196 KRRAGAAVYNRASSLETLVSIL 217
+RRAG AVYN+ASSLETL+ L
Sbjct: 174 RRRAGNAVYNKASSLETLIGYL 195
Score = 87 (35.7 bits), Expect = 4.8e-58, Sum P(2) = 4.8e-58
Identities = 16/21 (76%), Positives = 18/21 (85%)
Query: 21 VRASFDTQQRLSYNPNAPRKI 41
VRA+ DTQ RL YNPNAPRK+
Sbjct: 10 VRAALDTQPRLPYNPNAPRKV 30
>TAIR|locus:2205687 [details] [associations]
symbol:AT1G55140 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR000999 Pfam:PF00636 SMART:SM00535 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0003723 GO:GO:0006396 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 HOGENOM:HOG000218681 KO:K11145
EMBL:BT010444 EMBL:AK175163 IPI:IPI00522444 RefSeq:NP_175910.2
UniGene:At.43071 ProteinModelPortal:Q6NQK8 PRIDE:Q6NQK8
EnsemblPlants:AT1G55140.1 GeneID:841957 KEGG:ath:AT1G55140
TAIR:At1g55140 InParanoid:Q6NQK8 OMA:IEEYNDR PhylomeDB:Q6NQK8
ProtClustDB:CLSN2918803 Genevestigator:Q6NQK8 Uniprot:Q6NQK8
Length = 237
Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
Identities = 114/198 (57%), Positives = 137/198 (69%)
Query: 21 VRASFDTQQRLSYNPNAPRKIXXXXXXXXXXXXXXXXDVAIAKXXXXXXXXXXXDQSVFD 80
VRA+ DTQ +L YNPNAPR + + A SV D
Sbjct: 11 VRAALDTQPKLRYNPNAPRNVKKNSNLSSFVPPSSPSSSSPATNLSV---------SVSD 61
Query: 81 LLKHPTQGVVAN-LDESYMGYERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFL 139
LLK P + + D++ +GYE+W P+PPKV KPRSVFNAASLAYIGD IYE+YARRHFL
Sbjct: 62 LLKRPASKDIGDGFDDTCVGYEKWFPSPPKVEKPRSVFNAASLAYIGDSIYEIYARRHFL 121
Query: 140 FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRA 199
FPPLSIEEYN+RV AVVRCE Q ALLQKL++D +L+ +ERD++RWGKNVGS TR+ RRA
Sbjct: 122 FPPLSIEEYNDRVRAVVRCEAQYALLQKLVDDDFLTKDERDILRWGKNVGSVKTRSTRRA 181
Query: 200 GAAVYNRASSLETLVSIL 217
G AVYN+ASSLETL+ L
Sbjct: 182 GVAVYNKASSLETLIGYL 199
>UNIPROTKB|O31418 [details] [associations]
symbol:mrnC "Mini-ribonuclease 3" species:224308 "Bacillus
subtilis subsp. subtilis str. 168" [GO:0004540 "ribonuclease
activity" evidence=IDA] [GO:0006364 "rRNA processing" evidence=IDA]
HAMAP:MF_01468 InterPro:IPR000999 Pfam:PF00636 SMART:SM00535
GO:GO:0005737 EMBL:AL009126 GenomeReviews:AL009126_GR GO:GO:0004540
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 PIR:C69742 RefSeq:NP_387976.1
ProteinModelPortal:O31418 SMR:O31418
EnsemblBacteria:EBBACT00000003947 GeneID:936369 KEGG:bsu:BSU00950
PATRIC:18971699 GenoList:BSU00950 eggNOG:COG1939
HOGENOM:HOG000218681 KO:K11145 OMA:DAVYELF ProtClustDB:CLSK886573
BioCyc:BSUB:BSU00950-MONOMER InterPro:IPR008226 PIRSF:PIRSF005520
Uniprot:O31418
Length = 143
Score = 125 (49.1 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 31/107 (28%), Positives = 52/107 (48%)
Query: 112 KPRSVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLN 170
K N +LAYIGD I+E+Y R H L + + + + +V ++Q +L L N
Sbjct: 8 KDSKQLNGLALAYIGDAIFEVYVRHHLLKQGFTKPNDLHKKSSRIVSAKSQAEILFFLQN 67
Query: 171 DSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSIL 217
S+ + EE V++ G+N S T + Y +++ E L+ L
Sbjct: 68 QSFFTEEEEAVLKRGRNAKSGTT--PKNTDVQTYRYSTAFEALLGYL 112
>UNIPROTKB|Q3A9P2 [details] [associations]
symbol:mrnC "Mini-ribonuclease 3" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01468 InterPro:IPR000999 Pfam:PF00636 SMART:SM00535
GO:GO:0005737 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0090305
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG1939 HOGENOM:HOG000218681 KO:K11145
OMA:DAVYELF InterPro:IPR008226 PIRSF:PIRSF005520 RefSeq:YP_361142.1
ProteinModelPortal:Q3A9P2 STRING:Q3A9P2 GeneID:3728486
KEGG:chy:CHY_2337 PATRIC:21277741
BioCyc:CHYD246194:GJCN-2336-MONOMER Uniprot:Q3A9P2
Length = 129
Score = 120 (47.3 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 32/102 (31%), Positives = 55/102 (53%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
++ +LAY+GD +YEL R + L + E + + +++V Q AL +L+ + YL+
Sbjct: 6 YSPLALAYLGDAVYELLTREYVLERYGGKMGEVHKKSVSLVNAR-QQALAGELIEE-YLT 63
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSIL 217
+EER++ R G+N A R VY R++ LE + L
Sbjct: 64 SEEREIFRRGRN---AKGNYPRNVEVVVYRRSTGLEAVFGFL 102
>TIGR_CMR|CHY_2337 [details] [associations]
symbol:CHY_2337 "conserved hypothetical protein"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01468 InterPro:IPR000999 Pfam:PF00636
SMART:SM00535 GO:GO:0005737 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0090305 GO:GO:0019843 GO:GO:0006364 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG1939
HOGENOM:HOG000218681 KO:K11145 OMA:DAVYELF InterPro:IPR008226
PIRSF:PIRSF005520 RefSeq:YP_361142.1 ProteinModelPortal:Q3A9P2
STRING:Q3A9P2 GeneID:3728486 KEGG:chy:CHY_2337 PATRIC:21277741
BioCyc:CHYD246194:GJCN-2336-MONOMER Uniprot:Q3A9P2
Length = 129
Score = 120 (47.3 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 32/102 (31%), Positives = 55/102 (53%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
++ +LAY+GD +YEL R + L + E + + +++V Q AL +L+ + YL+
Sbjct: 6 YSPLALAYLGDAVYELLTREYVLERYGGKMGEVHKKSVSLVNAR-QQALAGELIEE-YLT 63
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSIL 217
+EER++ R G+N A R VY R++ LE + L
Sbjct: 64 SEEREIFRRGRN---AKGNYPRNVEVVVYRRSTGLEAVFGFL 102
>UNIPROTKB|Q97S24 [details] [associations]
symbol:mrnC "Mini-ribonuclease 3" species:170187
"Streptococcus pneumoniae TIGR4" [GO:0005515 "protein binding"
evidence=IPI] HAMAP:MF_01468 InterPro:IPR000999 Pfam:PF00636
SMART:SM00535 GO:GO:0005737 EMBL:AE005672 GenomeReviews:AE005672_GR
GO:GO:0090305 GO:GO:0019843 GO:GO:0006364 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 HOGENOM:HOG000218681 KO:K11145
InterPro:IPR008226 PIRSF:PIRSF005520 PIR:H95068 PIR:H97936
RefSeq:NP_345105.1 ProteinModelPortal:Q97S24 SMR:Q97S24
EnsemblBacteria:EBSTRT00000026883 GeneID:930538 KEGG:spn:SP_0592
PATRIC:19705541 OMA:IYRRGRN ProtClustDB:CLSK877291 Uniprot:Q97S24
Length = 128
Score = 115 (45.5 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 25/104 (24%), Positives = 52/104 (50%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH + ++ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQARLIALMLEEQV 64
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSIL 217
L+ +E ++ + G+N S +T+ K A Y ++ E ++ L
Sbjct: 65 LTEKEEEIYKRGRNTNS-HTKAKN-ADVVTYRMSTGFEAVMGYL 106
>UNIPROTKB|Q81VV0 [details] [associations]
symbol:mrnC "Mini-ribonuclease 3" species:1392 "Bacillus
anthracis" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_01468 InterPro:IPR000999
Pfam:PF00636 SMART:SM00535 GO:GO:0005737 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0090305
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 HOGENOM:HOG000218681 KO:K11145 OMA:DAVYELF
InterPro:IPR008226 PIRSF:PIRSF005520 RefSeq:NP_842658.1
RefSeq:YP_016694.1 RefSeq:YP_026376.1 ProteinModelPortal:Q81VV0
SMR:Q81VV0 DNASU:1088081 EnsemblBacteria:EBBACT00000008421
EnsemblBacteria:EBBACT00000018669 EnsemblBacteria:EBBACT00000021737
GeneID:1088081 GeneID:2814903 GeneID:2851416 KEGG:ban:BA_0090
KEGG:bar:GBAA_0090 KEGG:bat:BAS0090 ProtClustDB:CLSK915703
BioCyc:BANT260799:GJAJ-101-MONOMER
BioCyc:BANT261594:GJ7F-103-MONOMER Uniprot:Q81VV0
Length = 135
Score = 112 (44.5 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 28/98 (28%), Positives = 48/98 (48%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRV-MAVVRCETQDALLQKLLNDSYLSA 176
N+ +LAY+GD +YE Y R H L +R+ + V + Q ++ LL ++L+
Sbjct: 8 NSLALAYMGDAVYEQYIRYHLLQKGKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTE 67
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLV 214
EE V+R G+N S + Y +++ E L+
Sbjct: 68 EEEAVLRRGRNANSGTV--PKNTDVQTYRHSTAFEALI 103
>TIGR_CMR|BA_0090 [details] [associations]
symbol:BA_0090 "conserved hypothetical protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01468 InterPro:IPR000999 Pfam:PF00636 SMART:SM00535
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0090305 GO:GO:0019843 GO:GO:0006364
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
HOGENOM:HOG000218681 KO:K11145 OMA:DAVYELF InterPro:IPR008226
PIRSF:PIRSF005520 RefSeq:NP_842658.1 RefSeq:YP_016694.1
RefSeq:YP_026376.1 ProteinModelPortal:Q81VV0 SMR:Q81VV0
DNASU:1088081 EnsemblBacteria:EBBACT00000008421
EnsemblBacteria:EBBACT00000018669 EnsemblBacteria:EBBACT00000021737
GeneID:1088081 GeneID:2814903 GeneID:2851416 KEGG:ban:BA_0090
KEGG:bar:GBAA_0090 KEGG:bat:BAS0090 ProtClustDB:CLSK915703
BioCyc:BANT260799:GJAJ-101-MONOMER
BioCyc:BANT261594:GJ7F-103-MONOMER Uniprot:Q81VV0
Length = 135
Score = 112 (44.5 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 28/98 (28%), Positives = 48/98 (48%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRV-MAVVRCETQDALLQKLLNDSYLSA 176
N+ +LAY+GD +YE Y R H L +R+ + V + Q ++ LL ++L+
Sbjct: 8 NSLALAYMGDAVYEQYIRYHLLQKGKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTE 67
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLV 214
EE V+R G+N S + Y +++ E L+
Sbjct: 68 EEEAVLRRGRNANSGTV--PKNTDVQTYRHSTAFEALI 103
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.135 0.406 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 278 239 0.00092 113 3 11 22 0.38 33
32 0.44 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 8
No. of states in DFA: 604 (64 KB)
Total size of DFA: 181 KB (2104 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 17.65u 0.11s 17.76t Elapsed: 00:00:01
Total cpu time: 17.65u 0.11s 17.76t Elapsed: 00:00:01
Start: Fri May 10 16:25:45 2013 End: Fri May 10 16:25:46 2013