BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023707
         (278 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2GSL|A Chain A, X-Ray Crystal Structure Of Protein Fn1578 From
           Fusobacterium Nucleatum. Northeast Structural Genomics
           Consortium Target Nr1.
 pdb|2GSL|B Chain B, X-Ray Crystal Structure Of Protein Fn1578 From
           Fusobacterium Nucleatum. Northeast Structural Genomics
           Consortium Target Nr1.
 pdb|2GSL|C Chain C, X-Ray Crystal Structure Of Protein Fn1578 From
           Fusobacterium Nucleatum. Northeast Structural Genomics
           Consortium Target Nr1.
 pdb|2GSL|D Chain D, X-Ray Crystal Structure Of Protein Fn1578 From
           Fusobacterium Nucleatum. Northeast Structural Genomics
           Consortium Target Nr1.
 pdb|2GSL|E Chain E, X-Ray Crystal Structure Of Protein Fn1578 From
           Fusobacterium Nucleatum. Northeast Structural Genomics
           Consortium Target Nr1.
 pdb|2GSL|F Chain F, X-Ray Crystal Structure Of Protein Fn1578 From
           Fusobacterium Nucleatum. Northeast Structural Genomics
           Consortium Target Nr1
          Length = 137

 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 6/100 (6%)

Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
           ++   LA++GD I+EL  R+++L    +I   N  V A V  + Q  + +K++ND     
Sbjct: 13  YSGLELAFLGDAIWELEIRKYYLQFGYNIPTLNKYVKAKVNAKYQSLIYKKIIND---LD 69

Query: 177 EERDVVRWGKNVGSANTRT-KRRAGAAVYNRASSLETLVS 215
           EE  V+  GK   ++N +T  R      Y  A++LE ++ 
Sbjct: 70  EEFKVI--GKRAKNSNIKTFPRSCTVXEYKEATALEAIIG 107


>pdb|1U61|A Chain A, Crystal Structure Of Putative Ribonuclease Iii From
           Bacillus Cereus
          Length = 138

 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 3/100 (3%)

Query: 117 FNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
            N+ +LAY GD +YE Y R H L    +   + +    + V  + Q  ++  LL  ++L+
Sbjct: 10  LNSLALAYXGDAVYEQYIRYHLLQKGKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLT 69

Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVS 215
            EE  V+R G+N  S      +      Y  +++ E L+ 
Sbjct: 70  EEEEAVLRRGRNANSGT--VPKNTDVQTYRHSTAFEALIG 107


>pdb|1VLH|A Chain A, Crystal Structure Of Phosphopantetheine
           Adenylyltransferase (Tm0741) From Thermotoga Maritima At
           2.20 A Resolution
 pdb|1VLH|B Chain B, Crystal Structure Of Phosphopantetheine
           Adenylyltransferase (Tm0741) From Thermotoga Maritima At
           2.20 A Resolution
 pdb|1VLH|C Chain C, Crystal Structure Of Phosphopantetheine
           Adenylyltransferase (Tm0741) From Thermotoga Maritima At
           2.20 A Resolution
 pdb|1VLH|D Chain D, Crystal Structure Of Phosphopantetheine
           Adenylyltransferase (Tm0741) From Thermotoga Maritima At
           2.20 A Resolution
 pdb|1VLH|E Chain E, Crystal Structure Of Phosphopantetheine
           Adenylyltransferase (Tm0741) From Thermotoga Maritima At
           2.20 A Resolution
 pdb|1VLH|F Chain F, Crystal Structure Of Phosphopantetheine
           Adenylyltransferase (Tm0741) From Thermotoga Maritima At
           2.20 A Resolution
          Length = 173

 Score = 29.3 bits (64), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 208 SSLETLVSILVPCFSFISCQIAKCIMIYSGGCTN 241
           S LET+  I    FSFIS  + K + +Y G  T 
Sbjct: 121 SDLETVFLIASEKFSFISSSLVKEVALYGGDVTE 154


>pdb|2BVU|A Chain A, D83r Mutant Of Asaris Suum Major Sperm Protein (Msp)
 pdb|2BVU|B Chain B, D83r Mutant Of Asaris Suum Major Sperm Protein (Msp)
 pdb|2BVU|C Chain C, D83r Mutant Of Asaris Suum Major Sperm Protein (Msp)
 pdb|2BVU|D Chain D, D83r Mutant Of Asaris Suum Major Sperm Protein (Msp)
          Length = 126

 Score = 28.9 bits (63), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 24/47 (51%)

Query: 125 IGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLND 171
           IG  I     RR  + PP  + +   +V+  V C+T +A  ++L ND
Sbjct: 41  IGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCDTFNAATERLNND 87


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.135    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,478,142
Number of Sequences: 62578
Number of extensions: 221226
Number of successful extensions: 387
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 383
Number of HSP's gapped (non-prelim): 4
length of query: 278
length of database: 14,973,337
effective HSP length: 98
effective length of query: 180
effective length of database: 8,840,693
effective search space: 1591324740
effective search space used: 1591324740
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)