BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023707
(278 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P74327|MRNC_SYNY3 Mini-ribonuclease 3 OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=mrnC PE=3 SV=1
Length = 143
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 60/97 (61%), Gaps = 5/97 (5%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
+LAY+GD ++ELY R +LFPP I +++ RV+A VR E Q +L LL L+ E++
Sbjct: 29 ALAYLGDAVFELYVRCCYLFPPRRIGDFHRRVVAQVRAEQQAQILTTLL--PQLTDPEKE 86
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSIL 217
VR G+N A T T RRA +Y AS LETL+ L
Sbjct: 87 WVRRGRN---AATSTSRRANPELYQAASGLETLLGYL 120
>sp|Q8DLQ0|MRNC_THEEB Mini-ribonuclease 3 OS=Thermosynechococcus elongatus (strain BP-1)
GN=mrnC PE=3 SV=1
Length = 151
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 57/112 (50%), Gaps = 7/112 (6%)
Query: 106 NPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALL 165
PP + P A+LAY GD +YEL+ R FL PP I Y+ +V+A VR E+Q +
Sbjct: 11 QPPTI--PAHQLPPAALAYFGDAVYELFIRLLFLTPPQRINAYHRQVVAHVRAESQARYM 68
Query: 166 QKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSIL 217
L Y + ER + R G+N + +R A +Y +A+ E L+ L
Sbjct: 69 DFLWE--YCTETERSIFRQGRNAAADG---PKRVAAKIYRQATGFEALLGYL 115
>sp|Q05370|MRNC_SYNP1 Mini-ribonuclease 3 OS=Synechococcus sp. (strain PCC 6716) GN=mrnC
PE=3 SV=1
Length = 146
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
+LAY GD +YEL+ R FL PP I Y+++V+A VR E+Q + L + +A E
Sbjct: 26 ALAYFGDAVYELFIRFIFLTPPQRINAYHHQVVAHVRAESQARYMDILW--PHCTAAELT 83
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSIL 217
+ R G+N + +R A +Y +A+ E L+ L
Sbjct: 84 IFRQGRNAAADG---PKRVPAKIYRQATGFEALLGYL 117
>sp|Q5N0K8|MRNC_SYNP6 Mini-ribonuclease 3 OS=Synechococcus sp. (strain ATCC 27144 / PCC
6301 / SAUG 1402/1) GN=mrnC PE=3 SV=2
Length = 138
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
+LAY+GD +YE + R L P + + V+ VR E Q LL LL +AEE +
Sbjct: 27 ALAYLGDALYEFHVRLRLLLPAQRSHQVHQSVVGAVRAERQAELLVSLLPLL--TAEELE 84
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSILVPC 220
+VR G+N A R RR Y +A+ LETL+ L C
Sbjct: 85 IVRRGRN---AAGRVPRRLTGEYYQQATGLETLLGYLYLC 121
>sp|Q7NDQ2|MRNC_GLOVI Mini-ribonuclease 3 OS=Gloeobacter violaceus (strain PCC 7421)
GN=mrnC PE=3 SV=2
Length = 135
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
+LAY+GD ++EL+ R L PP ++ + +A VR Q L L +L+ EE D
Sbjct: 13 ALAYLGDAVWELHVRTRVLLPPRRLQWLHGDTVACVRASAQAKLATCL--SPHLTVEEAD 70
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSIL 217
+R G+N G RR A Y A++ E L+ L
Sbjct: 71 WLRRGRNAGGT---VPRRLDPATYRLATAFEALLGYL 104
>sp|O31418|MRNC_BACSU Mini-ribonuclease 3 OS=Bacillus subtilis (strain 168) GN=mrnC PE=1
SV=1
Length = 143
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Query: 112 KPRSVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLN 170
K N +LAYIGD I+E+Y R H L + + + + +V ++Q +L L N
Sbjct: 8 KDSKQLNGLALAYIGDAIFEVYVRHHLLKQGFTKPNDLHKKSSRIVSAKSQAEILFFLQN 67
Query: 171 DSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSIL 217
S+ + EE V++ G+N S T + Y +++ E L+ L
Sbjct: 68 QSFFTEEEEAVLKRGRNAKSGT--TPKNTDVQTYRYSTAFEALLGYL 112
>sp|Q2RFM4|MRNC_MOOTA Mini-ribonuclease 3 OS=Moorella thermoacetica (strain ATCC 39073)
GN=mrnC PE=3 SV=1
Length = 127
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 121 SLAYIGDCIYELYARRHFLF-PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
+LAY+GD +YEL R H + P E+ + + VR Q ++ L + YL+ E+
Sbjct: 11 ALAYVGDAVYELLVRAHLVGRGPAKPEQLHREALKYVRATAQARVVPAL--EEYLTPAEK 68
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSIL 217
D++R G+N + R A A Y+ +++LE+L+ L
Sbjct: 69 DILRRGRNARPGH--LPRTAAPAEYHSSTALESLLGYL 104
>sp|Q250Q5|MRNC_DESHY Mini-ribonuclease 3 OS=Desulfitobacterium hafniense (strain Y51)
GN=mrnC PE=3 SV=1
Length = 157
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 113 PRSV--FNAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLL 169
PRS NA +LAY+GD +YEL+ R H L + E + VR TQ LL +L
Sbjct: 2 PRSWQEMNALTLAYLGDVVYELWVRTHLLNNGYEKVNELHRLATQYVRAGTQAKLLHHIL 61
Query: 170 NDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVS 215
+L +E VV G+N + ++ Y A+ E LV
Sbjct: 62 --PHLDEQELSVVHRGRNAKGGHPKS---TDVVTYRYATGFEALVG 102
>sp|A9NEJ0|MRNC_ACHLI Mini-ribonuclease 3 OS=Acholeplasma laidlawii (strain PG-8A)
GN=mrnC PE=3 SV=1
Length = 125
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 8/118 (6%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPL-SIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD YEL R++ + + ++ + + + + E Q +++ L+ LS
Sbjct: 1 MNGLALAYLGDAYYELEIRKYLITQGIRNVGKLHTEKVRLASNEAQASIMNYFLSLEILS 60
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSILVPCFSFISCQIAKCIM 233
EE D + G+N S N+R ++ Y +A+ E+L+ L S I Q AK ++
Sbjct: 61 EEEIDAYKKGRNK-SHNSR--KQMDMVTYQQATGFESLIGYL----SIIDEQRAKDLI 111
>sp|Q8DQS7|MRNC_STRR6 Mini-ribonuclease 3 OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=mrnC PE=3 SV=1
Length = 128
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH + ++ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQARLIALMLEEQV 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLVSIL 217
L+ +E ++ + G+N N+ TK + A Y ++ E ++ L
Sbjct: 65 LTEKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYL 106
>sp|Q8RIL0|MRNCL_FUSNN Mini-ribonuclease 3-like protein OS=Fusobacterium nucleatum subsp.
nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 /
LMG 13131) GN=mrnCL PE=1 SV=1
Length = 129
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 6/102 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
++ LA++GD I+EL R+++L +I N V A V + Q + +K++ND
Sbjct: 13 YSGLELAFLGDAIWELEIRKYYLQFGYNIPTLNKYVKAKVNAKYQSLIYKKIIND---LD 69
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAV-YNRASSLETLVSIL 217
EE V+ GK ++N +T R+ + Y A++LE ++ +
Sbjct: 70 EEFKVI--GKRAKNSNIKTFPRSCTVMEYKEATALEAIIGAM 109
>sp|Q81J58|MRNC_BACCR Mini-ribonuclease 3 OS=Bacillus cereus (strain ATCC 14579 / DSM 31)
GN=mrnC PE=1 SV=1
Length = 135
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N+ +LAY+GD +YE Y R H L + + + + V + Q ++ LL ++L+
Sbjct: 7 LNSLALAYMGDAVYEQYIRYHLLQKGKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVS 215
EE V+R G+N S + Y +++ E L+
Sbjct: 67 EEEEAVLRRGRNANSGT--VPKNTDVQTYRHSTAFEALIG 104
>sp|E3H9T2|MRNCL_ILYPC Mini-ribonuclease 3-like protein OS=Ilyobacter polytropus (strain
DSM 2926 / CuHBu1) GN=mrnCL PE=3 SV=1
Length = 127
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 122 LAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDV 181
LAY+GD ++EL R +F+ I N +V +V + Q + + +L D L + + V
Sbjct: 14 LAYLGDAVWELTVREYFVEKGYKINTMNKKVKKLVNAKAQSVIFKSILED--LDEDYKAV 71
Query: 182 VRWGKNVGSANTRTKRRAGAAV-YNRASSLETLVS 215
R KN +N ++ R+ + + Y A++ E L++
Sbjct: 72 ARRAKN---SNIKSFPRSCSIMEYREATAFEALIA 103
>sp|Q67JQ0|MRNC_SYMTH Mini-ribonuclease 3 OS=Symbiobacterium thermophilum (strain T / IAM
14863) GN=mrnC PE=3 SV=1
Length = 130
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 121 SLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
+LAY+GD +YE + R L + + + + + V+ Q A+L L+ L+ +E+
Sbjct: 13 TLAYLGDALYEAFVRERLLERGYVRVNDLHRHALRYVQATAQAAILHHLM--PALTEQEQ 70
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSIL 217
DVVR G+N + A A Y ++ E LV L
Sbjct: 71 DVVRRGRNAKGHG--APKSADPAEYAASTGFEALVGYL 106
>sp|Q890M5|MRNC_CLOTE Mini-ribonuclease 3 OS=Clostridium tetani (strain Massachusetts /
E88) GN=mrnC PE=3 SV=1
Length = 151
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 122 LAYIGDCIYELYARRHFLFPPLS--IEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
LAYIGD +YE++ R + + + + + + + V+ + Q ++++ YL+ EE
Sbjct: 23 LAYIGDAVYEIFIRTYIISKNKDTCVNKLHKKTIQFVKADAQSYFIREI--QKYLNEEEI 80
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSIL 217
V + G+N S NT K A Y A+ ET++ L
Sbjct: 81 KVFKRGRNTKS-NTSAK-NASIQDYRMATGFETVIGYL 116
>sp|F9UL76|MRNC_LACPL Mini-ribonuclease 3 OS=Lactobacillus plantarum (strain ATCC BAA-793
/ NCIMB 8826 / WCFS1) GN=mrnC PE=3 SV=1
Length = 136
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE + R+H + + + ++ V + Q AL++++ + L+
Sbjct: 8 LNGIALAYLGDAVYEPFIRQHLIESGFTKATKLHHHATHYVSAKAQAALIERMQAEEVLT 67
Query: 176 AEERDVVRWGKNVGS 190
E DV + G+N S
Sbjct: 68 PTEVDVFKRGRNAKS 82
>sp|Q839V4|MRNC_ENTFA Mini-ribonuclease 3 OS=Enterococcus faecalis (strain ATCC 700802 /
V583) GN=mrnC PE=3 SV=1
Length = 132
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA-VVRCETQDALLQKLLNDSYLS 175
N +LAY+GD IYE+Y R + + + +R+ V + Q +L+Q +L L+
Sbjct: 7 LNGLALAYVGDAIYEIYIRDYLVSLGQTKPNVLHRMATHYVSAKAQASLMQAMLAGEMLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSIL 217
EE + + G+N S + A Y A+ E+L+ L
Sbjct: 67 EEEEVMYKRGRNAKSHT--FAKNADVTTYRVATGFESLMGYL 106
>sp|Q2G2M4|MRNC_STAA8 Mini-ribonuclease 3 OS=Staphylococcus aureus (strain NCTC 8325)
GN=mrnC PE=3 SV=1
Length = 134
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLF----PPLSIEEYNNRVMAVVRCETQDALLQKLLND 171
+ N +LAY+GD + + Y R + + P + + + + V ++Q L+ L+
Sbjct: 11 LLNPLTLAYMGDAVLDQYVRTYIVLKLKSKPNKLHQMSKK---YVSAKSQAQTLEYLMEQ 67
Query: 172 SYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSIL 217
+ + EE D+++ G+N S +T+ K Y ++S++E ++ L
Sbjct: 68 EWFTDEEMDILKRGRNAKS-HTKAK-NTDVQTYRKSSAIEAVIGFL 111
>sp|B0K5F7|MRNC_THEPX Mini-ribonuclease 3 OS=Thermoanaerobacter sp. (strain X514) GN=mrnC
PE=3 SV=2
Length = 142
Score = 39.7 bits (91), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Query: 122 LAYIGDCIYELYARRHFLFP---PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEE 178
LA+IGD +Y LY R + P++ + + V+ + Q ++++ + LS EE
Sbjct: 28 LAFIGDAVYSLYIRTKIVAQKNQPVNF--LHKETVKYVKAKAQAESVKRIYD--LLSEEE 83
Query: 179 RDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSILVPCFSF 223
+D+VR G+N+ S NT T + Y A+ E L+ L F
Sbjct: 84 KDIVRRGRNMKS-NT-TPKGVEVQAYRYATGFEALLGYLYLAGEF 126
>sp|C5CF30|MRNC_KOSOT Mini-ribonuclease 3 OS=Kosmotoga olearia (strain TBF 19.5.1)
GN=mrnC PE=3 SV=1
Length = 145
Score = 38.1 bits (87), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEY-NNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
SL+++GD +Y LY R L Y +N + V + Q L+ + + +LS EER
Sbjct: 21 SLSFVGDAVYSLYFRIKTLRSAKRRTGYQHNLTLLYVEAKGQRKALEVI--EKFLSEEER 78
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSIL 217
+VR G N A ++R Y A++LE LV L
Sbjct: 79 IIVRRGYNSRGA----RKRGDDENYKCATALEALVGYL 112
>sp|Q8YAB0|MRNC_LISMO Mini-ribonuclease 3 OS=Listeria monocytogenes serovar 1/2a (strain
ATCC BAA-679 / EGD-e) GN=mrnC PE=3 SV=1
Length = 136
Score = 37.7 bits (86), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 112 KPRSVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLN 170
K N +LAY+GD +YE + R + L + + + V + Q L+ ++
Sbjct: 5 KEYKQLNGLALAYMGDAVYEKFIREYLLAAGKTKPNQLHKTATKFVSAKGQAVALKAMIA 64
Query: 171 DSYLSAEERDVVRWGKNVGS 190
+ +L+ EE + + G+N S
Sbjct: 65 EGFLTEEEDRIAKRGRNAKS 84
>sp|Q9CEJ1|MRNC_LACLA Mini-ribonuclease 3 OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=mrnC PE=3 SV=1
Length = 133
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 3/104 (2%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
+ N +LAYIGD IYE++ R + L L+ V + Q ++ + +
Sbjct: 7 ELLNGIALAYIGDAIYEVFVREYLLDKGLTKPAMLQKNATKFVSAKAQAKIISAMDEVDF 66
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSIL 217
L+ E + G+N S T + Y ++ E +V IL
Sbjct: 67 LTEYELTYFKRGRNAHSKT--TAKNTDVVTYRISTGFEAVVGIL 108
>sp|P20964|OBG_BACSU GTPase ObgE OS=Bacillus subtilis (strain 168) GN=obg PE=1 SV=1
Length = 428
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 55 NKSDVAIAKPPTSTVTPTSTDQSVFDLLKHPTQGVVA 91
N D+ I PP + VT T Q + DL +H + V+A
Sbjct: 81 NADDMVIKVPPGTVVTDDDTKQVIADLTEHGQRAVIA 117
>sp|Q86WK6|AMGO1_HUMAN Amphoterin-induced protein 1 OS=Homo sapiens GN=AMIGO1 PE=1 SV=1
Length = 493
Score = 32.0 bits (71), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEE----YNNRVMAVVRCETQD-ALLQKLLNDSYLS 175
+L Y+ +L FLF L + E YNN +MAV RC D A LQKL YLS
Sbjct: 111 NLRYLDLSSNQLRTLDEFLFSDLQVLEVLLLYNNHIMAVDRCAFDDMAQLQKL----YLS 166
Query: 176 AEE 178
+
Sbjct: 167 QNQ 169
>sp|C0ZIF8|MRNC_BREBN Mini-ribonuclease 3 OS=Brevibacillus brevis (strain 47 / JCM 6285 /
NBRC 100599) GN=mrnC PE=3 SV=1
Length = 134
Score = 30.8 bits (68), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 11/100 (11%)
Query: 122 LAYIGDCIYELYARRHF----LFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAE 177
LA++GD Y R H L P + + NR V + Q +L L+ L E
Sbjct: 18 LAFLGDATYSHCVRYHLIAKGLVKPNQLHKAANR---YVSAKAQANVLLTLM--PTLPEE 72
Query: 178 ERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSIL 217
E +VV+ G+N S + + + A Y A++ E L+ L
Sbjct: 73 ELNVVKRGRNAKSGS--SAKNADIIDYRHATAFEALIGYL 110
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,672,232
Number of Sequences: 539616
Number of extensions: 3991795
Number of successful extensions: 11969
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 11924
Number of HSP's gapped (non-prelim): 60
length of query: 278
length of database: 191,569,459
effective HSP length: 116
effective length of query: 162
effective length of database: 128,974,003
effective search space: 20893788486
effective search space used: 20893788486
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)