Query 023707
Match_columns 278
No_of_seqs 134 out of 448
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 06:03:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023707.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023707hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1939 Ribonuclease III famil 100.0 9.4E-47 2E-51 316.1 11.9 120 113-236 9-131 (132)
2 PF00636 Ribonuclease_3: Ribon 99.4 3.5E-12 7.6E-17 99.2 10.4 99 121-221 2-113 (114)
3 cd00593 RIBOc RIBOc. Ribonucle 99.3 1.1E-11 2.3E-16 97.6 10.1 101 116-230 18-122 (133)
4 smart00535 RIBOc Ribonuclease 99.3 2.2E-11 4.8E-16 96.1 9.9 101 118-232 18-122 (129)
5 PRK00102 rnc ribonuclease III; 98.8 4.6E-08 1E-12 84.9 9.7 100 119-232 41-144 (229)
6 TIGR02191 RNaseIII ribonucleas 98.6 2.3E-07 4.9E-12 79.8 9.7 101 118-232 34-138 (220)
7 PRK12371 ribonuclease III; Rev 98.0 6.7E-05 1.5E-09 67.8 11.0 92 118-223 45-138 (235)
8 PF14622 Ribonucleas_3_3: Ribo 97.9 1.7E-05 3.8E-10 64.5 4.2 90 120-223 23-113 (128)
9 PRK14718 ribonuclease III; Pro 97.8 9.1E-05 2E-09 73.9 9.2 100 119-232 34-137 (467)
10 PRK12372 ribonuclease III; Rev 97.6 0.00021 4.6E-09 70.4 9.0 100 119-232 34-137 (413)
11 COG0571 Rnc dsRNA-specific rib 97.3 0.00067 1.5E-08 62.1 7.3 103 118-234 43-149 (235)
12 KOG1817 Ribonuclease [RNA proc 94.6 0.28 6E-06 49.9 10.1 98 120-232 312-413 (533)
13 KOG1817 Ribonuclease [RNA proc 62.7 49 0.0011 34.3 9.0 97 120-232 133-235 (533)
14 smart00114 CARD Caspase recrui 62.3 13 0.00029 28.3 4.0 72 154-228 15-86 (88)
15 cd08324 CARD_NOD1_CARD4 Caspas 49.4 17 0.00036 29.7 2.7 26 163-188 19-44 (85)
16 cd08788 CARD_NOD2_2_CARD15 Cas 49.3 9.5 0.00021 30.8 1.3 54 162-217 17-70 (81)
17 cd08323 CARD_APAF1 Caspase act 47.6 17 0.00036 28.9 2.5 66 162-230 17-83 (86)
18 cd08329 CARD_BIRC2_BIRC3 Caspa 46.4 23 0.0005 28.3 3.1 60 162-224 26-85 (94)
19 PF08105 Antimicrobial10: Metc 45.9 12 0.00027 27.9 1.3 17 23-40 32-48 (52)
20 PF03754 DUF313: Domain of unk 45.7 20 0.00043 30.1 2.7 23 160-182 36-61 (114)
21 cd08332 CARD_CASP2 Caspase act 42.5 30 0.00065 27.3 3.2 66 162-230 23-89 (90)
22 PF14163 SieB: Superinfection 41.7 47 0.001 27.8 4.4 39 149-189 56-94 (151)
23 cd08325 CARD_CASP1-like Caspas 35.5 31 0.00068 26.8 2.2 59 162-222 19-77 (83)
24 PF09836 DUF2063: Uncharacteri 32.2 19 0.00042 27.7 0.6 35 119-153 53-87 (94)
25 PF04675 DNA_ligase_A_N: DNA l 29.8 2.3E+02 0.0051 23.7 6.7 59 125-185 90-157 (177)
26 PF05436 MF_alpha_N: Mating fa 28.4 21 0.00047 29.0 0.3 13 211-223 36-48 (86)
27 cd08330 CARD_ASC_NALP1 Caspase 26.8 79 0.0017 24.5 3.2 25 162-186 18-42 (82)
28 PF00619 CARD: Caspase recruit 26.1 1.1E+02 0.0025 22.4 3.8 56 161-219 18-73 (85)
29 PF09851 SHOCT: Short C-termin 25.7 1.2E+02 0.0027 19.6 3.5 23 161-183 4-26 (31)
30 cd07922 CarBa CarBa is the A s 23.7 59 0.0013 25.9 2.0 19 168-186 30-48 (81)
31 PF08067 ROKNT: ROKNT (NUC014) 22.2 47 0.001 24.1 1.0 14 176-189 27-40 (43)
32 cd07923 Gallate_dioxygenase_C 20.8 1.9E+02 0.0042 23.8 4.4 39 147-185 7-48 (94)
33 PF09422 WTX: WTX protein; In 20.6 37 0.00081 34.9 0.4 11 123-133 430-440 (471)
No 1
>COG1939 Ribonuclease III family protein [Replication, recombination, and repair]
Probab=100.00 E-value=9.4e-47 Score=316.11 Aligned_cols=120 Identities=28% Similarity=0.471 Sum_probs=114.3
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHhhCCCC-ChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCC
Q 023707 113 PRSVFNAASLAYIGDCIYELYARRHFLFPPL-SIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSA 191 (278)
Q Consensus 113 ~~~~lspLaLAYLGDAVyELyVR~~LL~~g~-~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~ 191 (278)
+.+++||++|||+||||||+|||.|++.+|. ++++||+.|++||||++||.+|+.|++ +|||+|.+|+|||||++++
T Consensus 9 ~~~qln~laLAy~GDAV~e~yVR~~~l~~g~~k~~~lH~~a~~~VsAk~QA~il~~~~~--~Lte~E~~I~KRgRNaks~ 86 (132)
T COG1939 9 DAKQLNGLALAYLGDAVYELYVREYLLLKGKTKPNDLHKRATAYVSAKAQALILKALLE--FLTEEEEEIVKRGRNAKSG 86 (132)
T ss_pred CHHhcCHHHHHHhhhHHHHHHHHHHHHhcccCChHHHHHHHHHHhhHHHHHHHHHHHHH--HhhHHHHHHHHHhcccccC
Confidence 5678999999999999999999999999997 699999999999999999999999995 8999999999999999997
Q ss_pred CCCCCCCCChHHHhhhhhHHHHHHhHhcCcch--HHHHHHHHHHHhc
Q 023707 192 NTRTKRRAGAAVYNRASSLETLVSILVPCFSF--ISCQIAKCIMIYS 236 (278)
Q Consensus 192 ks~~pKnasv~~YR~ATGFEALIGYLYL~g~~--L~ELl~~~i~~ie 236 (278)
+ .|||+|+.+||+|||||||||||||+++. |+||+++|++..+
T Consensus 87 T--~~kn~dv~tYr~sTgfEAliGyLyL~~~~eRL~ell~~~i~~~e 131 (132)
T COG1939 87 T--KPKNTDVETYRMSTGFEALIGYLYLTKQEERLEELLNKVIEIVE 131 (132)
T ss_pred C--CCCCCChHHHHHhhhHHHHHHHHHHcccHHHHHHHHHHHHhhhc
Confidence 3 58999999999999999999999999999 9999999998875
No 2
>PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3.1.26.3 from EC) (gene rnc) [] is an enzyme that digests double-stranded RNA. It is involved in the processing of ribosomal RNA precursors and of some mRNAs. RNase III is evolutionary related to a number of proteins including []: Saccharomyces cerevisiae (Baker's yeast) protein pac1, a ribonuclease that probably inhibits mating and meiosis by degrading a specific mRNA required for sexual development yeast ribonuclease III (gene RNT1), a dsRNA-specific nuclease that cleaves eukaryotic preribosomal RNA at various sites Caenorhabditis elegans hypothetical protein F26E4.13 Paramecium bursaria Chlorella virus 1 (PBCV-1) 1 protein A464R Synechocystis sp. (strain PCC 6803) hypothetical protein slr0346 yeast hypothetical protein SpAC8A4.08c, a protein with a N-terminal helicase domain and a C-terminal RNase III domain C. elegans hypothetical protein K12H4.8, a protein with the same structure as SpAC8A4.08c ; GO: 0003723 RNA binding, 0004525 ribonuclease III activity, 0006396 RNA processing; PDB: 2GSL_A 2NUE_B 1YYO_A 2NUF_A 1YZ9_A 1JFZ_A 1YYW_C 1RC5_B 1YYK_B 1RC7_A ....
Probab=99.39 E-value=3.5e-12 Score=99.21 Aligned_cols=99 Identities=20% Similarity=0.225 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHHHhhC--CCCChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcC-----------
Q 023707 121 SLAYIGDCIYELYARRHFLF--PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKN----------- 187 (278)
Q Consensus 121 aLAYLGDAVyELyVR~~LL~--~g~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRN----------- 187 (278)
.|+||||||++++|+.++.. +..++..||..-..+|+.+.++.+..++-=..++..++.++.+|++|
T Consensus 2 rLefLGDavL~~~v~~~l~~~~p~~~~~~L~~~r~~~vsn~~L~~~a~~~gl~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (114)
T PF00636_consen 2 RLEFLGDAVLKLLVSEYLFEKYPNLNEGQLTKLRSALVSNKFLARLAVKLGLHKYLRQEPFEIQRWIKPFNEDLNNGDSE 81 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHSHHHHHHHHHHTTHGCTCBHHHHHHHHHHHCHHCC-------
T ss_pred cHhHhHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCHHHHHHHHHHhCchHhhhccchhHHHHHHHHHHHHHhcccc
Confidence 48999999999999999995 45689999999999999999999998854347999999999999988
Q ss_pred CCCCCCCCCCCCChHHHhhhhhHHHHHHhHhcCc
Q 023707 188 VGSANTRTKRRAGAAVYNRASSLETLVSILVPCF 221 (278)
Q Consensus 188 aks~ks~~pKnasv~~YR~ATGFEALIGYLYL~g 221 (278)
.... ..+++.....+..|+.||||||.+|+.+
T Consensus 82 ~~~~--~~~~~~~~~~k~laD~~EAliGAiyld~ 113 (114)
T PF00636_consen 82 SSIS--YDPKNQVLPPKVLADVFEALIGAIYLDS 113 (114)
T ss_dssp C-SS--S--SSSSHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccC--CCccccCCccHHHHHHHHHHHHHHHHhc
Confidence 1111 1134677899999999999999999853
No 3
>cd00593 RIBOc RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing.
Probab=99.33 E-value=1.1e-11 Score=97.57 Aligned_cols=101 Identities=24% Similarity=0.232 Sum_probs=82.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhhCCC--CChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCC
Q 023707 116 VFNAASLAYIGDCIYELYARRHFLFPP--LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANT 193 (278)
Q Consensus 116 ~lspLaLAYLGDAVyELyVR~~LL~~g--~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks 193 (278)
..+-..|+|+||+|++++++.+++... .+++.+|.....+|+.+.++.+..++- |- +.++++++..
T Consensus 18 ~~~~e~Le~lGdavl~~~~~~~l~~~~~~~~~~~l~~~~~~~v~n~~l~~~a~~~g----l~----~~i~~~~~~~---- 85 (133)
T cd00593 18 RFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALVSNETLARLARELG----LG----KYLRLGKGEE---- 85 (133)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHCHHHHHHHHHHcC----cH----HHhccCchHh----
Confidence 367889999999999999999999763 479999999999999999999988883 21 5777777653
Q ss_pred CCCCCCChHHHhhhhhHHHHHHhHhcCcch--HHHHHHH
Q 023707 194 RTKRRAGAAVYNRASSLETLVSILVPCFSF--ISCQIAK 230 (278)
Q Consensus 194 ~~pKnasv~~YR~ATGFEALIGYLYL~g~~--L~ELl~~ 230 (278)
.++.....+..|++||||||++||.+.. ..++|..
T Consensus 86 --~~~~~~~~k~~ad~~eAliGAiyld~g~~~~~~~i~~ 122 (133)
T cd00593 86 --KSGGRLRPKILADVFEALIGAIYLDGGFEAARKFLLR 122 (133)
T ss_pred --hcCCcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 2355678899999999999999999875 5555554
No 4
>smart00535 RIBOc Ribonuclease III family.
Probab=99.29 E-value=2.2e-11 Score=96.10 Aligned_cols=101 Identities=21% Similarity=0.219 Sum_probs=80.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHhhCC--CCChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCC
Q 023707 118 NAASLAYIGDCIYELYARRHFLFP--PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRT 195 (278)
Q Consensus 118 spLaLAYLGDAVyELyVR~~LL~~--g~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~ 195 (278)
+-..|+|+||+|++++++.+++.. ..+...+|.....+|+.+.++.+..++- |. +.++++++...
T Consensus 18 ~~e~Le~lGd~vl~~~v~~~l~~~~p~~~~~~l~~~~~~lvsn~~la~~a~~~~----l~----~~i~~~~~~~~----- 84 (129)
T smart00535 18 HNERLEFLGDAVLELVVTEYLYKKYPDLSEGDLSRLRSALVSNETLARLAKKLG----LG----EFIRLGRGEAI----- 84 (129)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHCHHHHHHHHHHCC----cH----HHHccCchHhh-----
Confidence 567899999999999999999965 2468899999999999999999988883 22 57778876532
Q ss_pred CCCCChHHHhhhhhHHHHHHhHhcCcch--HHHHHHHHH
Q 023707 196 KRRAGAAVYNRASSLETLVSILVPCFSF--ISCQIAKCI 232 (278)
Q Consensus 196 pKnasv~~YR~ATGFEALIGYLYL~g~~--L~ELl~~~i 232 (278)
++.....+..|++|||+||++|+.+.. ..+.+...+
T Consensus 85 -~~~~~~~k~~a~~~eAliGAi~ld~g~~~~~~~i~~~~ 122 (129)
T smart00535 85 -SGGRDKPSILADVFEALIGAIYLDSGLEAAREFIRDLL 122 (129)
T ss_pred -cCCcccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 233467899999999999999999764 444444433
No 5
>PRK00102 rnc ribonuclease III; Reviewed
Probab=98.77 E-value=4.6e-08 Score=84.88 Aligned_cols=100 Identities=20% Similarity=0.261 Sum_probs=73.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCC--CCChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCCC
Q 023707 119 AASLAYIGDCIYELYARRHFLFP--PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTK 196 (278)
Q Consensus 119 pLaLAYLGDAVyELyVR~~LL~~--g~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~p 196 (278)
=-.|+|+||+|++++|..+++.. ..+...++.....+|+.+.++.+..++- |. +.+++|++.... ..+
T Consensus 41 nerLefLGDavl~~~v~~~l~~~~p~~~~g~l~~~~~~lvsn~~la~~a~~lg----l~----~~i~~~~~~~~~--~~~ 110 (229)
T PRK00102 41 NERLEFLGDAVLELVVSEYLFKRFPDLDEGDLSKLRAALVREESLAEIARELG----LG----EYLLLGKGEEKS--GGR 110 (229)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCHHHHHHHHHHCC----cH----HHHccCcHHHHc--CCC
Confidence 37899999999999999999843 3578899999999999999999988873 32 466777653211 011
Q ss_pred CCCChHHHhhhhhHHHHHHhHhcCcch--HHHHHHHHH
Q 023707 197 RRAGAAVYNRASSLETLVSILVPCFSF--ISCQIAKCI 232 (278)
Q Consensus 197 Knasv~~YR~ATGFEALIGYLYL~g~~--L~ELl~~~i 232 (278)
++.. -.|+.|||+||.+|+.+.. ..+++...+
T Consensus 111 ~~~k----~~ad~~EA~iGAiyld~g~~~~~~~i~~~~ 144 (229)
T PRK00102 111 RRPS----ILADAFEALIGAIYLDQGLEAARKFILRLF 144 (229)
T ss_pred CCcc----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 1111 2799999999999998765 555554443
No 6
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=98.62 E-value=2.3e-07 Score=79.80 Aligned_cols=101 Identities=21% Similarity=0.226 Sum_probs=73.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHhhCC--CCChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCC
Q 023707 118 NAASLAYIGDCIYELYARRHFLFP--PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRT 195 (278)
Q Consensus 118 spLaLAYLGDAVyELyVR~~LL~~--g~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~ 195 (278)
+=..|+||||+|.++++..++... ..+...++.....+|+.+.++.+...+ + | .+.++++++.... +.
T Consensus 34 ~nerLe~lGd~vl~~~~~~~l~~~~p~~~~~~l~~~~~~lvsn~~la~~a~~~---g-l----~~~i~~~~~~~~~--~~ 103 (220)
T TIGR02191 34 NNERLEFLGDAVLGLVVAEYLFKNFPDLSEGELSKLRAALVSEESLAEVAREL---G-L----GKFLLLGKGEEKS--GG 103 (220)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCHHHHHHHHHHC---C-c----HHHhccCchHhhc--CC
Confidence 457899999999999999999963 357899999999999999999998887 2 2 2455666533210 00
Q ss_pred CCCCChHHHhhhhhHHHHHHhHhcCcch--HHHHHHHHH
Q 023707 196 KRRAGAAVYNRASSLETLVSILVPCFSF--ISCQIAKCI 232 (278)
Q Consensus 196 pKnasv~~YR~ATGFEALIGYLYL~g~~--L~ELl~~~i 232 (278)
. + ..--.|+.|||+||.+|+.+.. ..+++...+
T Consensus 104 ~-~---~~k~~ad~~eAliGAiyld~g~~~~~~~i~~~~ 138 (220)
T TIGR02191 104 R-R---RESILADAFEALIGAIYLDSGLEAARKFILKLL 138 (220)
T ss_pred c-c---cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 0 1 1124799999999999998765 555444443
No 7
>PRK12371 ribonuclease III; Reviewed
Probab=98.00 E-value=6.7e-05 Score=67.78 Aligned_cols=92 Identities=25% Similarity=0.302 Sum_probs=67.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHhhCC--CCChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCC
Q 023707 118 NAASLAYIGDCIYELYARRHFLFP--PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRT 195 (278)
Q Consensus 118 spLaLAYLGDAVyELyVR~~LL~~--g~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~ 195 (278)
|=--|+|+||||.++.|=.++... ..+...|++.-...|+.+.-+.+...+- | .+.++.|.+.... ..
T Consensus 45 ~~eRLEFLGDavL~l~vs~~Lf~~~p~~~eG~Lt~~rs~lV~n~~La~ia~~lg----L----~~~i~~~~~~~~~--~~ 114 (235)
T PRK12371 45 NYERLEFLGDRVLGLCVAEMLFEAFPDASEGELSVRLNQLVNAETCAAIADEIG----L----HDLIRTGSDVKKL--TG 114 (235)
T ss_pred chHhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhChHHHHHHHHHCC----c----HHHhccCcchhhc--CC
Confidence 446799999999999999999864 3578889988889999999888877762 3 2344556543221 01
Q ss_pred CCCCChHHHhhhhhHHHHHHhHhcCcch
Q 023707 196 KRRAGAAVYNRASSLETLVSILVPCFSF 223 (278)
Q Consensus 196 pKnasv~~YR~ATGFEALIGYLYL~g~~ 223 (278)
+++. --.|+.||||||-+||.+..
T Consensus 115 ~~~~----~ilad~~EAliGAiylD~G~ 138 (235)
T PRK12371 115 KRLL----NVRADVVEALIAAIYLDGGL 138 (235)
T ss_pred cccc----hHHHHHHHHHHHHHHHcCCH
Confidence 1222 23499999999999998755
No 8
>PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B.
Probab=97.85 E-value=1.7e-05 Score=64.49 Aligned_cols=90 Identities=20% Similarity=0.301 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCC-CChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCCCCC
Q 023707 120 ASLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRR 198 (278)
Q Consensus 120 LaLAYLGDAVyELyVR~~LL~~g-~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~pKn 198 (278)
--|+||||+|.+++|-++++..+ .....+.+.-.+.|+-+.-+.+.+.+- |. +.++||.+... ..
T Consensus 23 erLefLGd~vL~~~vs~~l~~~~~~~~g~l~~~~~~lv~~~~La~~a~~lg----L~----~~i~~~~~~~~------~~ 88 (128)
T PF14622_consen 23 ERLEFLGDAVLGLVVSEYLFQRPPADEGELTRLRSNLVSNETLAEIAKQLG----LD----KLIRWGPGEEK------SG 88 (128)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHSHHHHHHHHHHTT----CG----GC-B--HHHHH------TT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCccchHHHHHHHHHhChHHHHHHHHHCC----HH----HHHHhCccHhh------cC
Confidence 46999999999999999998654 345667666678999888888887773 32 24444331110 01
Q ss_pred CChHHHhhhhhHHHHHHhHhcCcch
Q 023707 199 AGAAVYNRASSLETLVSILVPCFSF 223 (278)
Q Consensus 199 asv~~YR~ATGFEALIGYLYL~g~~ 223 (278)
....+--.|+.|||+||-+||....
T Consensus 89 ~~~~~~vlad~feAliGAiyld~G~ 113 (128)
T PF14622_consen 89 GSGSDKVLADVFEALIGAIYLDSGF 113 (128)
T ss_dssp GGG-HHHHHHHHHHHHHHHHHHH-H
T ss_pred CCCCccHHHhHHHHHHHHHHHHcCH
Confidence 1222335899999999999997654
No 9
>PRK14718 ribonuclease III; Provisional
Probab=97.81 E-value=9.1e-05 Score=73.88 Aligned_cols=100 Identities=16% Similarity=0.163 Sum_probs=71.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCC--CCChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCCC
Q 023707 119 AASLAYIGDCIYELYARRHFLFP--PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTK 196 (278)
Q Consensus 119 pLaLAYLGDAVyELyVR~~LL~~--g~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~p 196 (278)
=--|.||||+|.+++|=.+|+.. ..+...|.+.-..+|+-+.-+.+-+.|- |. +.++.|++.... ...
T Consensus 34 NERLEFLGDAVL~liVse~Lf~~fPdl~EGeLT~LRS~LVSnetLA~IAr~LG----L~----d~Lrlg~gE~~s--gG~ 103 (467)
T PRK14718 34 NERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYEIAQALN----IS----DGLRLGEGELRS--GGF 103 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhhHHHHHHHHHcC----ch----HHHhhCCccccc--CCC
Confidence 36799999999999999999943 4578999999999999999888877772 33 245556543211 001
Q ss_pred CCCChHHHhhhhhHHHHHHhHhcCcch--HHHHHHHHH
Q 023707 197 RRAGAAVYNRASSLETLVSILVPCFSF--ISCQIAKCI 232 (278)
Q Consensus 197 Knasv~~YR~ATGFEALIGYLYL~g~~--L~ELl~~~i 232 (278)
+ ..--.|..||||||-+||.+.+ ..++|...+
T Consensus 104 ~----~~sILADvFEALIGAIYLDsG~e~a~~fI~~ll 137 (467)
T PRK14718 104 R----RPSILADAFEAIIGAVFLDGGFEAAQGVIKRLY 137 (467)
T ss_pred C----ChhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 1 1223799999999999998766 555544444
No 10
>PRK12372 ribonuclease III; Reviewed
Probab=97.65 E-value=0.00021 Score=70.41 Aligned_cols=100 Identities=15% Similarity=0.157 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCC--CCChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCCC
Q 023707 119 AASLAYIGDCIYELYARRHFLFP--PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTK 196 (278)
Q Consensus 119 pLaLAYLGDAVyELyVR~~LL~~--g~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~p 196 (278)
=--|.|+||+|.+++|=.+|+.. ..+...|++.-..+|+.+.-+.+-+.|- |. +.++-|+..... ...
T Consensus 34 NERLEFLGDAVL~liVse~Lf~~fP~~~EG~LT~lRS~LVsn~tLA~IA~~Lg----L~----~~Lrlg~ge~~s--gg~ 103 (413)
T PRK12372 34 NERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYEIAQALN----IS----EGLRLGEGELRS--GGF 103 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhHHHHHHHHHcC----ch----HhhhcCcchhhc--CCC
Confidence 36799999999999999999943 3578899999999999999998877772 32 234445432110 001
Q ss_pred CCCChHHHhhhhhHHHHHHhHhcCcch--HHHHHHHHH
Q 023707 197 RRAGAAVYNRASSLETLVSILVPCFSF--ISCQIAKCI 232 (278)
Q Consensus 197 Knasv~~YR~ATGFEALIGYLYL~g~~--L~ELl~~~i 232 (278)
. ..--.|..||||||-+||.+.. ..+++...+
T Consensus 104 ~----~~kILADvfEALIGAIYLDsG~e~a~~fV~~ll 137 (413)
T PRK12372 104 R----RPSILADAFEAIIGAVFLDGGFEAAQGVIKRLY 137 (413)
T ss_pred C----CccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 1 1123799999999999999766 444444443
No 11
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=97.32 E-value=0.00067 Score=62.14 Aligned_cols=103 Identities=23% Similarity=0.281 Sum_probs=71.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHhhC--CCCChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCC
Q 023707 118 NAASLAYIGDCIYELYARRHFLF--PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRT 195 (278)
Q Consensus 118 spLaLAYLGDAVyELyVR~~LL~--~g~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~ 195 (278)
|=--|=|+||||-++.|=++|.. +..+..+|++.-..+|+.++=+.+-+.|- |. +.++.|+-... ++.
T Consensus 43 ~nERLEFLGDavL~l~vae~Lf~~yP~~~EG~Ls~~ra~lV~~~~La~ia~~l~----l~----~~l~lg~ge~~--~gg 112 (235)
T COG0571 43 NNERLEFLGDAVLGLVVAEYLFKKYPNLPEGELSKLRAALVSEESLAEIARELG----LG----DYLRLGKGEEK--SGG 112 (235)
T ss_pred chHHHHhhHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhC----cc----chhhccCChhh--cCC
Confidence 44568999999999999999994 44679999999999999998888777763 22 12333432211 111
Q ss_pred CCCCChHHHhhhhhHHHHHHhHhcCcch--HHHHHHHHHHH
Q 023707 196 KRRAGAAVYNRASSLETLVSILVPCFSF--ISCQIAKCIMI 234 (278)
Q Consensus 196 pKnasv~~YR~ATGFEALIGYLYL~g~~--L~ELl~~~i~~ 234 (278)
.++ +=-.|.+|||+||-+||.+.. ..+++...+.-
T Consensus 113 ~~~----~silaD~~EAligAiylD~g~~~~~~~i~~l~~~ 149 (235)
T COG0571 113 RRR----ESILADAFEALIGAIYLDSGLEAARKFILKLFLP 149 (235)
T ss_pred CCc----hhHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 122 223688999999999999875 55554444443
No 12
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=94.56 E-value=0.28 Score=49.92 Aligned_cols=98 Identities=16% Similarity=0.113 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhC--CCCChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCCCC
Q 023707 120 ASLAYIGDCIYELYARRHFLF--PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKR 197 (278)
Q Consensus 120 LaLAYLGDAVyELyVR~~LL~--~g~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~pK 197 (278)
.-|-|+||+|+.|.+-+++.. +...-..|-..-..+|+-+.|+++-+.+ .++|-=.. |-.. ++
T Consensus 312 qRLEFLGDSilqlv~T~ily~kFPdhhEGhLSlLRssLVsNetqakva~~l----gf~e~li~------n~~~-----k~ 376 (533)
T KOG1817|consen 312 QRLEFLGDSILQLVMTEILYRKFPDHHEGHLSLLRSSLVSNETQAKVADDL----GFHEYLIT------NFDL-----KD 376 (533)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhCCccccchHHHHHHHHhccHHHHHHHHHh----CCchhhhh------Ccch-----hh
Confidence 457899999999999999884 3345566777778899999999987666 24443222 2211 11
Q ss_pred CCChHHHhhhhhHHHHHHhHhcCcch--HHHHHHHHH
Q 023707 198 RAGAAVYNRASSLETLVSILVPCFSF--ISCQIAKCI 232 (278)
Q Consensus 198 nasv~~YR~ATGFEALIGYLYL~g~~--L~ELl~~~i 232 (278)
-.+...==+|.-|||.||-||+-++. +.+.+..|+
T Consensus 377 ~~~lk~K~~ADlfEAfiGaLyvD~~le~~~qf~~~l~ 413 (533)
T KOG1817|consen 377 FQNLKLKDYADLFEAFIGALYVDKGLEYCRQFLRVLF 413 (533)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHh
Confidence 12222333588999999999999776 555454443
No 13
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=62.69 E-value=49 Score=34.34 Aligned_cols=97 Identities=19% Similarity=0.224 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhCC-C-CChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCCCC
Q 023707 120 ASLAYIGDCIYELYARRHFLFP-P-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKR 197 (278)
Q Consensus 120 LaLAYLGDAVyELyVR~~LL~~-g-~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~pK 197 (278)
-.|-|+||||=|+-.=.++... + .....|-......|.-.+=+.+.++|. -+|...+--| +-
T Consensus 133 Erle~lgdavve~~ss~hl~~~~~r~~eggLatyrta~vqnr~la~lakklr------kd~fl~yahg----------~d 196 (533)
T KOG1817|consen 133 ERLEFLGDAVVELLSSNHLYFMFPRLEEGGLATYRTAIVQNRHLAKLAKKLR------KDEFLLYAHG----------YD 196 (533)
T ss_pred HHHHHHhhccHHHHHHHHHHHccccccccchhHHHHHHHHhHHHHHHHHHHH------HHHHHHHhcC----------cc
Confidence 4688999999999888877743 2 345556555555666555555666654 3444433322 34
Q ss_pred CCChHHHhhhh--hHHHHHHhHhcCcch--HHHHHHHHH
Q 023707 198 RAGAAVYNRAS--SLETLVSILVPCFSF--ISCQIAKCI 232 (278)
Q Consensus 198 nasv~~YR~AT--GFEALIGYLYL~g~~--L~ELl~~~i 232 (278)
+....+-|+|+ .|||++|-.||.|.. .+++....+
T Consensus 197 l~~~~E~Kha~an~feavi~a~~l~g~~~~~e~lfs~~~ 235 (533)
T KOG1817|consen 197 LCFETELKHAMANCFEAVIGAKYLDGGLVVAEKLFSRAL 235 (533)
T ss_pred hhhHHHHHHHHHHHHHHHhHHHHHhcchHHHHHHHHHHh
Confidence 56677777765 599999999999988 444444433
No 14
>smart00114 CARD Caspase recruitment domain. Motif contained in proteins involved in apoptotic signalling. Mediates homodimerisation. Structure consists of six antiparallel helices arranged in a topology homologue to the DEATH and the DED domain.
Probab=62.28 E-value=13 Score=28.28 Aligned_cols=72 Identities=11% Similarity=0.095 Sum_probs=45.2
Q ss_pred hHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCCCCCCChHHHhhhhhHHHHHHhHhcCcchHHHHH
Q 023707 154 AVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSILVPCFSFISCQI 228 (278)
Q Consensus 154 ~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~pKnasv~~YR~ATGFEALIGYLYL~g~~L~ELl 228 (278)
.+|+--.-..++..|++.+.||++|.+-++...+... +..+--+...=|-..||++++-.|.=..+.|.+++
T Consensus 15 ~l~~~l~~~~vld~L~~~~Vlt~~e~e~i~~~~t~~~---~~~~Lld~l~~kG~~Af~~F~~~L~~~~~~La~~L 86 (88)
T smart00114 15 RLGEELGVDGLLDYLVEKNVLTEKEIEAIKAATTKLR---DKRELVDSLQKRGSQAFDTFLDSLQETDQKLADFL 86 (88)
T ss_pred HHHHHcchhHHHHHHHHcCCCCHHHHHHHHccCChHH---HHHHHHHHHHhHhHHHHHHHHHHHHHccHHHHHHh
Confidence 3433333357999999999999999999998754422 11122344444567888888888853322255443
No 15
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=49.36 E-value=17 Score=29.66 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=22.5
Q ss_pred HHHHHhhcCCCCCHHHHHHHHhhcCC
Q 023707 163 ALLQKLLNDSYLSAEERDVVRWGKNV 188 (278)
Q Consensus 163 ~ll~~Lle~~~LTEEE~~IvRRGRNa 188 (278)
=+++.|++.|+||+||-++++.++-.
T Consensus 19 plLD~Ll~n~~it~E~y~~V~a~~T~ 44 (85)
T cd08324 19 CLVDNLLKNDYFSTEDAEIVCACPTQ 44 (85)
T ss_pred HHHHHHhccCCccHHHHHHHHhCCCC
Confidence 47888998899999999999988644
No 16
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=49.32 E-value=9.5 Score=30.80 Aligned_cols=54 Identities=19% Similarity=0.220 Sum_probs=37.1
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCCCCCCChHHHhhhhhHHHHHHhH
Q 023707 162 DALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSIL 217 (278)
Q Consensus 162 A~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~pKnasv~~YR~ATGFEALIGYL 217 (278)
..+|+.|++.|++|++|.+.+|.--|+.+. +..+=-|..--+-..|+..|++|+
T Consensus 17 ~~~Ld~ll~~G~is~~Ecd~Ir~p~~T~sq--qARrLLD~V~~KG~~A~~~ll~~v 70 (81)
T cd08788 17 DGALELLLTRGFFSSYDCDEIRLPIFTPSQ--QARRLLDLVKAKGEGAAKFLLEYV 70 (81)
T ss_pred HHHHHHHHHcCCccHhhcchhhcCCCChHH--HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 568999999999999999999985555432 112224445555566666666665
No 17
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=47.62 E-value=17 Score=28.89 Aligned_cols=66 Identities=8% Similarity=0.100 Sum_probs=43.5
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCCCCCCChHHHhhhhhHHHHHHhHhcCcch-HHHHHHH
Q 023707 162 DALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSILVPCFSF-ISCQIAK 230 (278)
Q Consensus 162 A~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~pKnasv~~YR~ATGFEALIGYLYL~g~~-L~ELl~~ 230 (278)
..++..|++++.||++|.+.++....... +..+=-+...=|-..||++..--|-=+|.. |.+++..
T Consensus 17 ~~ild~L~~~gvlt~~~~e~I~~~~t~~~---qa~~Lld~L~trG~~Af~~F~~aL~~~~~~~La~lL~~ 83 (86)
T cd08323 17 SYIMDHMISDGVLTLDEEEKVKSKATQKE---KAVMLINMILTKDNHAYVSFYNALLHEGYKDLALLLHD 83 (86)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHcCCChHH---HHHHHHHHHHhcCHHHHHHHHHHHHhcCChHHHHHHhc
Confidence 44899999999999999999987532211 111112344556677888777777655554 7777653
No 18
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=46.37 E-value=23 Score=28.28 Aligned_cols=60 Identities=13% Similarity=0.195 Sum_probs=40.3
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCCCCCCChHHHhhhhhHHHHHHhHhcCcchH
Q 023707 162 DALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSILVPCFSFI 224 (278)
Q Consensus 162 A~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~pKnasv~~YR~ATGFEALIGYLYL~g~~L 224 (278)
..+++.|++.+.||++|.+.+|...+.. . +..+=-+...=|=.+||++++-+|-=.+..|
T Consensus 26 ~~ilD~Ll~~~Vlt~ee~e~I~~~~t~~-~--qAr~Lld~l~~KG~~A~~~F~~~L~e~~~~L 85 (94)
T cd08329 26 LPILDSLLSANVITEQEYDVIKQKTQTP-L--QARELIDTVLVKGNAAAEVFRNCLKKNDPVL 85 (94)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHcCCChH-H--HHHHHHHHHHhhhHHHHHHHHHHHHhcCHhH
Confidence 4589999999999999999999865442 1 1112124445556788888888884333333
No 19
>PF08105 Antimicrobial10: Metchnikowin family; InterPro: IPR012513 This family consists of the metchnikowin family of antimicrobial peptides from Drosophila. metchnikowin is a proline-rich peptide whose expression is immune-inducible. Induction of the metchnikowin gene expression can be mediated either by the TOLL pathway or by the imd gene product. The metchnikowin peptide is unique among the Drosophila antimicrobial peptides in that it is active against both bacteria and fungi [].
Probab=45.90 E-value=12 Score=27.92 Aligned_cols=17 Identities=47% Similarity=0.864 Sum_probs=13.3
Q ss_pred ecccccccccCCCCCCCC
Q 023707 23 ASFDTQQRLSYNPNAPRK 40 (278)
Q Consensus 23 a~~d~~~~l~yn~~~~~~ 40 (278)
--|||.| -|+|||.||-
T Consensus 32 piFDTRP-SPFNPN~Prp 48 (52)
T PF08105_consen 32 PIFDTRP-SPFNPNQPRP 48 (52)
T ss_pred CCCCCCC-CCCCCCCCCC
Confidence 4589866 4899999984
No 20
>PF03754 DUF313: Domain of unknown function (DUF313) ; InterPro: IPR005508 This is a family of proteins from Arabidopsis thaliana (Mouse-ear cress) with uncharacterised function.
Probab=45.65 E-value=20 Score=30.06 Aligned_cols=23 Identities=22% Similarity=0.687 Sum_probs=19.2
Q ss_pred HHHHH---HHHhhcCCCCCHHHHHHH
Q 023707 160 TQDAL---LQKLLNDSYLSAEERDVV 182 (278)
Q Consensus 160 AQA~l---l~~Lle~~~LTEEE~~Iv 182 (278)
.|+++ ++++++.+||||||..++
T Consensus 36 ~qsRLsmP~~qi~~~dFLt~eE~~~i 61 (114)
T PF03754_consen 36 HQSRLSMPFNQIIDNDFLTEEEKRII 61 (114)
T ss_pred CCceeeccHHHhcccccCCHHHHHHH
Confidence 56665 678878899999999999
No 21
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=42.53 E-value=30 Score=27.32 Aligned_cols=66 Identities=14% Similarity=0.059 Sum_probs=45.1
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCCCCCCChHHHhhhhhHHHHHHhHhcCcch-HHHHHHH
Q 023707 162 DALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSILVPCFSF-ISCQIAK 230 (278)
Q Consensus 162 A~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~pKnasv~~YR~ATGFEALIGYLYL~g~~-L~ELl~~ 230 (278)
..++..|..+|.||+++.+.++....... +..|=-+.-.=|=-+||.++.-.|-=+++. |.+++++
T Consensus 23 ~~v~~~L~~~gvlt~~~~~~I~~~~t~~~---k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~~La~lL~~ 89 (90)
T cd08332 23 DELLIHLLQKDILTDSMAESIMAKPTSFS---QNVALLNLLPKRGPRAFSAFCEALRETSQEHLCDLLEK 89 (90)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHcCCCcHH---HHHHHHHHHHHhChhHHHHHHHHHHhcChHHHHHHHhh
Confidence 35888999999999999999987543311 111223334556678899999888665655 7777653
No 22
>PF14163 SieB: Superinfection exclusion protein B
Probab=41.69 E-value=47 Score=27.84 Aligned_cols=39 Identities=21% Similarity=0.169 Sum_probs=23.0
Q ss_pred HHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCC
Q 023707 149 NNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVG 189 (278)
Q Consensus 149 Hk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNak 189 (278)
.+.+.+.-..+...+.+++.+ ..||++|+++++-=-+.+
T Consensus 56 ~~~~~~~~~~k~~~~~~~~~l--~~Lt~~EkavL~~~~~~~ 94 (151)
T PF14163_consen 56 YKEAKDRYQRKRKKKKIEKKL--NSLTPEEKAVLREFYIQG 94 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHCC
Confidence 334444344444444444444 469999999998665554
No 23
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=35.46 E-value=31 Score=26.82 Aligned_cols=59 Identities=15% Similarity=0.168 Sum_probs=37.6
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCCCCCCChHHHhhhhhHHHHHHhHhcCcc
Q 023707 162 DALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSILVPCFS 222 (278)
Q Consensus 162 A~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~pKnasv~~YR~ATGFEALIGYLYL~g~ 222 (278)
..+++.|++.+.||++|.+.++..-++...+ ...=.+...=|-..|++.++.+|.=.++
T Consensus 19 ~~llD~Ll~~~Vl~~~E~e~i~~~~~t~~dk--ar~Lid~v~~KG~~A~~iF~~~L~~~d~ 77 (83)
T cd08325 19 NGLLDDLLEKNVLNEEEMEKIKEENNTIMDK--ARVLVDSVTEKGQEAGQIFIKHLLNRDK 77 (83)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHhccCCHHHH--HHHHHHHHHHHhHHHHHHHHHHHHhcCh
Confidence 5688999999999999999999873332110 0001233444566677777776654443
No 24
>PF09836 DUF2063: Uncharacterized protein conserved in bacteria (DUF2063); InterPro: IPR018640 This entry contains proteins that have no known function. ; PDB: 3DEE_A.
Probab=32.23 E-value=19 Score=27.74 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCCCChhHHHHHHH
Q 023707 119 AASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVM 153 (278)
Q Consensus 119 pLaLAYLGDAVyELyVR~~LL~~g~~v~~LHk~av 153 (278)
|.+-++|||..|+-.+|.++...+-.-..+|+-..
T Consensus 53 P~~~~llG~~~f~~la~~y~~~~p~~s~~l~~~g~ 87 (94)
T PF09836_consen 53 PVVRALLGEEFFDALARAYIRAHPSRSPDLNDYGE 87 (94)
T ss_dssp TTGGGGS-HHHHHHHHHHHHHSGGGG-S-GGGHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHhCCCCCCcHHHHHH
Confidence 34557899999999999998876544444444433
No 25
>PF04675 DNA_ligase_A_N: DNA ligase N terminus; InterPro: IPR012308 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase, one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC), the latter being restricted to eubacteria. Eukaryotic, archaebacterial, viral and some eubacterial DNA ligases are ATP-dependent. The first step in the ligation reaction is the formation of a covalent enzyme-AMP complex. The co-factor ATP is cleaved to pyrophosphate and AMP, with the AMP being covalently joined to a highly conserved lysine residue in the active site of the ligase. The activated AMP residue is then transferred to the 5'phosphate of the nick, before the nick is sealed by phosphodiester-bond formation and AMP elimination [,]. Vertebrate cells encode three well-characterised DNA ligases (DNA ligases I, III and IV), all of which are related in structure and sequence. With the exception of the atypically small PBCV-1 viral enzyme, two regions of primary sequence are common to all members of the family. The catalytic region comprises six conserved sequence motifs (I, III, IIIa, IV, V-VI), motif I includes the lysine residue that is adenylated in the first step of the ligation reaction. The function of the second, less well-conserved region is unknown. When folded, each protein comprises of two distinct sub-domains: a large amino-terminal sub-domain ('domain 1') and a smaller carboxy-terminal sub-domain ('domain 2'). The ATP-binding site of the enzyme lies in the cleft between the two sub-domains. Domain 1 consists of two antiparallel beta sheets flanked by alpha helices, whereas domain 2 consists of a five-stranded beta barrel and a single alpha helix, which form the oligonucleotide-binding fold [, ]. This region is found in many but not all ATP-dependent DNA ligase enzymes (6.5.1.1 from EC). It is thought to be involved in DNA binding and in catalysis. In human DNA ligase I (P18858 from SWISSPROT), and in Saccharomyces cerevisiae (Baker's yeast) (P04819 from SWISSPROT), this region was necessary for catalysis, and separated from the amino terminus by targeting elements. In Vaccinia virus (P16272 from SWISSPROT) this region was not essential for catalysis, but deletion decreases the affinity for nicked DNA and decreased the rate of strand joining at a step subsequent to enzyme-adenylate formation []. ; GO: 0003677 DNA binding, 0003910 DNA ligase (ATP) activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 2CFM_A 3RR5_A 2HIX_A 2HIV_A 3L2P_A 1X9N_A 4EQ5_A 3GDE_A.
Probab=29.76 E-value=2.3e+02 Score=23.67 Aligned_cols=59 Identities=24% Similarity=0.303 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhhC---CCCChhHHHHHHHhHhchH------HHHHHHHHhhcCCCCCHHHHHHHHhh
Q 023707 125 IGDCIYELYARRHFLF---PPLSIEEYNNRVMAVVRCE------TQDALLQKLLNDSYLSAEERDVVRWG 185 (278)
Q Consensus 125 LGDAVyELyVR~~LL~---~g~~v~~LHk~av~yVsAk------AQA~ll~~Lle~~~LTEEE~~IvRRG 185 (278)
+|+.+.++.-++.-.. .+.++.++|..=.+...++ .|..++..|+. .+|++|..++-|=
T Consensus 90 ~g~~~~~~~~~~~~~~~~~~~lTi~~V~~~L~~la~~~g~~s~~~k~~~l~~ll~--~~s~~E~k~i~Ri 157 (177)
T PF04675_consen 90 LGEVAEEVLQKRKSETSKPSPLTISEVNETLDELAAASGKGSQDEKIDILKELLR--RCSPEEAKWIVRI 157 (177)
T ss_dssp HHHHHHHHHHHHTTTS--SS--BHHHHHHHHHHHHH--STTHHHHHHHHHHHHHT--TS-HHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccCCCCCCHHHHHHHHHHHHHhhCccchHHHHHHHHHHHH--hCCHHHHHHHHHH
Confidence 3666777766555332 3457888887766666544 67778888884 5899999988775
No 26
>PF05436 MF_alpha_N: Mating factor alpha precursor N-terminus; InterPro: IPR008675 This entry contains the N-terminal regions of the Saccharomyces mating factor alpha precursor protein. All proteins in this family contain one or more copies of IPR006742 from INTERPRO further toward their C terminus.; GO: 0007618 mating, 0005576 extracellular region
Probab=28.36 E-value=21 Score=28.99 Aligned_cols=13 Identities=15% Similarity=-0.028 Sum_probs=11.9
Q ss_pred HHHHHhHhcCcch
Q 023707 211 ETLVSILVPCFSF 223 (278)
Q Consensus 211 EALIGYLYL~g~~ 223 (278)
||+||||=|.|..
T Consensus 36 EAiiGyLDl~~d~ 48 (86)
T PF05436_consen 36 EAIIGYLDLGGDN 48 (86)
T ss_pred HHHhceeccCCCC
Confidence 9999999999974
No 27
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=26.85 E-value=79 Score=24.53 Aligned_cols=25 Identities=32% Similarity=0.415 Sum_probs=21.9
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHhhc
Q 023707 162 DALLQKLLNDSYLSAEERDVVRWGK 186 (278)
Q Consensus 162 A~ll~~Lle~~~LTEEE~~IvRRGR 186 (278)
..+++.|++.+.||+||.+-++...
T Consensus 18 ~~ilD~L~~~~Vit~e~~~~I~a~~ 42 (82)
T cd08330 18 DPILDKLHGKKVITQEQYSEVRAEK 42 (82)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHcCC
Confidence 5689999998999999999998753
No 28
>PF00619 CARD: Caspase recruitment domain; InterPro: IPR001315 The caspase recruitment domain domain (CARD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. CARD is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the death effector domain (DED, see IPR001875 from INTERPRO), which work in similar pathways and show similar interaction properties []. The CARD domain typically associates with other CARD-containing proteins, forming either dimers or trimers. CARD domains can be found in isolation, or in combination with other domains. Domains associated with CARD include: NACHT (IPR007111 from INTERPRO) (in Nal1 and Bir1), NB-ARC (IPR002182 from INTERPRO) (in Apaf-1), pyrin/dapin domains (IPR004020 from INTERPRO) (in Nal1), leucine-rich repeats () (in Nal1), WD repeats (IPR001680 from INTERPRO) (in Apaf1), Src homology domains (IPR001452 from INTERPRO), PDZ (IPR001478 from INTERPRO), RING, kinase and DD domains []. CARD-containing proteins are involved in apoptosis through their regulation of caspases that contain CARDs in their N-terminal pro-domains, including human caspases 1, 2, 9, 11 and 12 []. CARD-containing proteins are also involved in inflammation through their regulation of NF-kappaB []. The mechanisms by which CARDs activate caspases and NF-kappaB involve the assembly of multi-protein complexes, which can facilitate dimerisation or serve as scaffolds on which proteases and kinases are assembled and activated.; GO: 0005515 protein binding, 0042981 regulation of apoptosis, 0005622 intracellular; PDB: 2NSN_A 2NZ7_B 2DBD_A 4E9M_C 2B1W_A 3YGS_P 2KN6_A 3CRD_A 1DGN_A 3KAT_A ....
Probab=26.14 E-value=1.1e+02 Score=22.39 Aligned_cols=56 Identities=16% Similarity=0.240 Sum_probs=34.7
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCCCCCCChHHHhhhhhHHHHHHhHhc
Q 023707 161 QDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSILVP 219 (278)
Q Consensus 161 QA~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~pKnasv~~YR~ATGFEALIGYLYL 219 (278)
=..++..|.+.+.||++|.+.++....... +..+=-+...-|-..||+.++..|-=
T Consensus 18 ~~~ild~L~~~~vlt~~e~e~I~~~~t~~~---k~~~LLd~l~~kg~~a~~~F~~~L~~ 73 (85)
T PF00619_consen 18 LDDILDHLLSRGVLTEEEYEEIRSEPTRQD---KARKLLDILKRKGPEAFDIFCQALRE 73 (85)
T ss_dssp HHHHHHHHHHTTSSSHHHHHHHHTSSSHHH---HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHccCChHH---HHHHHHHHHHHHCHHHHHHHHHHHHh
Confidence 466899999999999999999998322210 00111233444555666666665544
No 29
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=25.71 E-value=1.2e+02 Score=19.65 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=18.2
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHH
Q 023707 161 QDALLQKLLNDSYLSAEERDVVR 183 (278)
Q Consensus 161 QA~ll~~Lle~~~LTEEE~~IvR 183 (278)
|=..|+.+.+.|.+|+||-.--|
T Consensus 4 ~L~~L~~l~~~G~IseeEy~~~k 26 (31)
T PF09851_consen 4 RLEKLKELYDKGEISEEEYEQKK 26 (31)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH
Confidence 44568888999999999987544
No 30
>cd07922 CarBa CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. 2-aminophenol 1,6-dioxygenase is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, the enzyme has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=23.71 E-value=59 Score=25.92 Aligned_cols=19 Identities=26% Similarity=0.428 Sum_probs=15.3
Q ss_pred hhcCCCCCHHHHHHHHhhc
Q 023707 168 LLNDSYLSAEERDVVRWGK 186 (278)
Q Consensus 168 Lle~~~LTEEE~~IvRRGR 186 (278)
++++--|||||++.++.|.
T Consensus 30 ~~~~~gLt~eE~~aL~~~D 48 (81)
T cd07922 30 VFEEYGLTPAERAALREGT 48 (81)
T ss_pred HHHHcCCCHHHHHHHHccC
Confidence 4445679999999999884
No 31
>PF08067 ROKNT: ROKNT (NUC014) domain; InterPro: IPR012987 This presumed domain is found at the N terminus of RNP K-like proteins that also contain KH domains IPR004088 from INTERPRO [].
Probab=22.20 E-value=47 Score=24.07 Aligned_cols=14 Identities=21% Similarity=0.385 Sum_probs=11.2
Q ss_pred HHHHHHHHhhcCCC
Q 023707 176 AEERDVVRWGKNVG 189 (278)
Q Consensus 176 EEE~~IvRRGRNak 189 (278)
-||...|||.||+-
T Consensus 27 meEe~afKRsrNtD 40 (43)
T PF08067_consen 27 MEEEQAFKRSRNTD 40 (43)
T ss_pred HHHHHHhccccccc
Confidence 36778899999983
No 32
>cd07923 Gallate_dioxygenase_C The C-terminal domain of Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of the PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. This model represents the C-terminal domain, which is similar to the A subunit of PCA 4,5-dioxygenase (or LigAB). The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. Since enzymes in this subfamily have fused A and B subunits, the dimer interface may resemble the tetramer interface of classical LigAB enzymes. This enzyme belongs to the class III extradiol dioxygenase family, composed of enzymes whi
Probab=20.78 E-value=1.9e+02 Score=23.82 Aligned_cols=39 Identities=21% Similarity=0.375 Sum_probs=27.2
Q ss_pred HHHHHHHhHhchHHHHHHH---HHhhcCCCCCHHHHHHHHhh
Q 023707 147 EYNNRVMAVVRCETQDALL---QKLLNDSYLSAEERDVVRWG 185 (278)
Q Consensus 147 ~LHk~av~yVsAkAQA~ll---~~Lle~~~LTEEE~~IvRRG 185 (278)
.|++-..++..|+...++. +.++++--|||||++.++.+
T Consensus 7 ~LN~f~~sL~~a~~RerF~~D~ea~~~e~gLt~Ee~~av~~r 48 (94)
T cd07923 7 RINRFLHRLIEPAHRERFLEDPEALFDEAGLTEEERTLIRNR 48 (94)
T ss_pred HHHHHHHHHCCHHHHHHHHhCHHHHHHHcCCCHHHHHHHHcc
Confidence 4555666667777666654 24556678999999998865
No 33
>PF09422 WTX: WTX protein; InterPro: IPR019003 This entry contains proteins that have no known function. The entry includes the WTX protein, which is an X chromosome gene; Wilms' tumor gene on the X chromosome (WTX) []. WTX protein is a protein encoded by a gene mutated in Wilms tumors and it forms a complex with beta-catenin, AXIN1 and beta-TrCP2 (beta-transducin repeat-containing protein 2) []. The WTX protein is found to be inactivated in one third of Wilms' tumours [].
Probab=20.64 E-value=37 Score=34.92 Aligned_cols=11 Identities=64% Similarity=1.358 Sum_probs=9.8
Q ss_pred HHHHHHHHHHH
Q 023707 123 AYIGDCIYELY 133 (278)
Q Consensus 123 AYLGDAVyELy 133 (278)
.|=|||.||||
T Consensus 430 SySGDALYely 440 (471)
T PF09422_consen 430 SYSGDALYELY 440 (471)
T ss_pred CccchhHHHhh
Confidence 47799999999
Done!