Query 023707
Match_columns 278
No_of_seqs 134 out of 448
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 11:25:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023707.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023707hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gsl_A Hypothetical protein; a 100.0 4E-38 1.4E-42 262.9 14.1 119 113-235 9-129 (137)
2 1u61_A Hypothetical protein; s 100.0 8.2E-37 2.8E-41 255.0 14.3 124 113-238 6-132 (138)
3 1o0w_A Ribonuclease III, RNAse 99.2 2.7E-11 9.2E-16 106.8 7.8 100 117-232 60-165 (252)
4 2a11_A Ribonuclease III, RNAse 99.2 6.4E-11 2.2E-15 103.2 8.9 102 117-232 40-148 (242)
5 2nug_A Ribonuclease III, RNAse 99.1 1.4E-10 4.8E-15 99.9 9.7 86 118-223 35-122 (221)
6 3o2r_A Ribonuclease III; struc 99.1 4.8E-10 1.6E-14 95.0 9.1 101 118-232 59-163 (170)
7 3n3w_A Ribonuclease III; nucle 99.0 4.2E-10 1.5E-14 99.6 7.5 103 118-234 59-165 (248)
8 3c4b_A Endoribonuclease dicer; 98.9 3.7E-09 1.3E-13 92.9 9.9 106 118-223 49-174 (265)
9 3rv1_A K. polysporus DCR1; RNA 97.8 8.1E-05 2.8E-09 66.9 9.1 91 118-221 128-220 (246)
10 3rv0_A K. polysporus DCR1; RNA 97.6 0.00033 1.1E-08 65.3 9.9 91 118-221 128-220 (341)
11 2qvw_A GLP_546_48378_50642; di 96.5 0.0062 2.1E-07 62.2 8.3 88 120-223 648-737 (756)
12 2qvw_A GLP_546_48378_50642; di 95.8 0.028 9.6E-07 57.5 9.2 84 118-220 333-418 (756)
13 3ygs_P Procaspase 9; apoptosis 41.9 8.3 0.00028 29.3 1.0 67 163-230 25-92 (97)
14 2p1h_A APAF-1, apoptotic prote 33.0 9.7 0.00033 28.1 0.2 65 162-229 25-90 (94)
15 2nz7_A NOD1, caspase recruitme 26.3 53 0.0018 25.4 3.3 26 162-188 30-55 (98)
16 2v6z_M DNA polymerase epsilon 23.8 1E+02 0.0036 24.3 4.6 41 206-246 46-87 (99)
17 2lz1_A Nuclear factor erythroi 22.9 42 0.0014 26.5 2.1 23 168-190 51-77 (90)
18 3e7j_A Heparinase II protein; 21.9 67 0.0023 32.8 4.0 63 117-183 85-154 (749)
19 1b4u_A LIGA, LIGB, protocatech 21.3 1.3E+02 0.0044 25.2 4.9 38 148-185 37-77 (139)
20 4e9m_A Nucleotide-binding olig 20.9 57 0.002 27.6 2.7 22 163-184 45-66 (144)
No 1
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp}
Probab=100.00 E-value=4e-38 Score=262.85 Aligned_cols=119 Identities=24% Similarity=0.263 Sum_probs=108.9
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHhhCCCCChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCC
Q 023707 113 PRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSAN 192 (278)
Q Consensus 113 ~~~~lspLaLAYLGDAVyELyVR~~LL~~g~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~k 192 (278)
+.+++||+.|||||||||||+||++++.+|.++++||+.++++|||++||.+++.|. ++|||+|.+++|||||++++
T Consensus 9 ~~~~~~~~~LefLGDAVleL~vr~~L~~~~~~~g~L~k~~~~~V~a~aqa~~~~~l~--~~Lte~E~~~~rrGrna~~~- 85 (137)
T 2gsl_A 9 DIRDYSGLELAFLGDAIWELEIRKYYLQFGYNIPTLNKYVKAKVNAKYQSLIYKKII--NDLDEEFKVIGKRAKNSNIK- 85 (137)
T ss_dssp TTTSCCHHHHHHHHHHHHHHHHHHHHTTSCBCHHHHHHHHHHHHSHHHHHHHHHHHG--GGSCHHHHHHHHHHHC--CC-
T ss_pred ChhhcCHHHHHHhhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhCHHHHHHHHHHHH--HHhCHHHHHHHHhcccccCC-
Confidence 457899999999999999999999999876699999999999999999999999995 58999999999999999875
Q ss_pred CCCCCCCChHHHhhhhhHHHHHHhHhcCcch--HHHHHHHHHHHh
Q 023707 193 TRTKRRAGAAVYNRASSLETLVSILVPCFSF--ISCQIAKCIMIY 235 (278)
Q Consensus 193 s~~pKnasv~~YR~ATGFEALIGYLYL~g~~--L~ELl~~~i~~i 235 (278)
+.|||+++.+||.|||||||||||||.++. +.+++.++++++
T Consensus 86 -~~~k~~si~~Y~~At~fEALiGaLYLd~~~erl~~ll~~~~~~~ 129 (137)
T 2gsl_A 86 -TFPRSCTVMEYKEATALEAIIGAMYLLKKEEEIKKIINIVIKGE 129 (137)
T ss_dssp -SCCSSSCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred -CCCCCCChHHHHHhhHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 358999999999999999999999999875 999999998765
No 2
>1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1
Probab=100.00 E-value=8.2e-37 Score=254.97 Aligned_cols=124 Identities=23% Similarity=0.394 Sum_probs=114.1
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHhhCCC-CChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCC
Q 023707 113 PRSVFNAASLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSA 191 (278)
Q Consensus 113 ~~~~lspLaLAYLGDAVyELyVR~~LL~~g-~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~ 191 (278)
+.+++||+.|||||||||||+||+||+.++ .++++||+.++++|+|++||.+++.|++++.|||||.+++|||||++++
T Consensus 6 ~~~~~~~erLefLGDAVlel~vr~~L~~~~~~~eg~L~k~r~~~V~a~aqa~~~~~l~~~~~L~eeE~~~~r~Grn~~~~ 85 (138)
T 1u61_A 6 DAKQLNSLALAYMGDAVYEQYIRYHLLQKGKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLRRGRNANSG 85 (138)
T ss_dssp CTTTSCHHHHHHHHHHHHHHHHHHHHHHHCCSCGGGHHHHHHHHHSHHHHHHHHHHHHHTTCSCHHHHHHHHHHTCCCSS
T ss_pred chhhcCHHHHHHhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHcCHHHHHHHHHHhhcccCCChHHHHHhhcCCCcccC
Confidence 457899999999999999999999999765 4899999999999999999999999977789999999999999999874
Q ss_pred CCCCCCCCChHHHhhhhhHHHHHHhHhcCcch--HHHHHHHHHHHhccc
Q 023707 192 NTRTKRRAGAAVYNRASSLETLVSILVPCFSF--ISCQIAKCIMIYSGG 238 (278)
Q Consensus 192 ks~~pKnasv~~YR~ATGFEALIGYLYL~g~~--L~ELl~~~i~~ie~~ 238 (278)
..+||+++.+||.|||||||||||||.+.. +.+++.+++..+++.
T Consensus 86 --~~~k~~si~~Yr~A~~fEALiGalYLd~g~er~~~~i~~~~~~~~~~ 132 (138)
T 1u61_A 86 --TVPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYKAIAVLEEQ 132 (138)
T ss_dssp --CCCTTCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC-
T ss_pred --CCCCCCchhhhhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 358999999999999999999999999886 999999999988765
No 3
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=99.20 E-value=2.7e-11 Score=106.77 Aligned_cols=100 Identities=15% Similarity=0.167 Sum_probs=75.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHhhCC--CCChhHHHHHHHhHhchHHHHHHHHHhhcCCC--CCHHHHHHHHhhcCCCCCC
Q 023707 117 FNAASLAYIGDCIYELYARRHFLFP--PLSIEEYNNRVMAVVRCETQDALLQKLLNDSY--LSAEERDVVRWGKNVGSAN 192 (278)
Q Consensus 117 lspLaLAYLGDAVyELyVR~~LL~~--g~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~--LTEEE~~IvRRGRNaks~k 192 (278)
.+...|+||||||++++|+.+|+.. ..+...|++....+|++++++.+.+.+--+++ +.+.|.. ..|
T Consensus 60 ~~nerLefLGDavL~l~v~~~L~~~~p~~~eg~Ls~~r~~lV~~~~la~~a~~lgL~~~l~~~~~e~~--~~~------- 130 (252)
T 1o0w_A 60 ESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKGEEK--TGG------- 130 (252)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHTSHHHHHHHHHHTTHHHHCBCCHHHHH--TTG-------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCHHHHHHHHHHcCcHHhhccCchhhh--cCC-------
Confidence 3679999999999999999999943 45799999999999999999999888732112 2232221 111
Q ss_pred CCCCCCCChHHHhhhhhHHHHHHhHhcCcch--HHHHHHHHH
Q 023707 193 TRTKRRAGAAVYNRASSLETLVSILVPCFSF--ISCQIAKCI 232 (278)
Q Consensus 193 s~~pKnasv~~YR~ATGFEALIGYLYL~g~~--L~ELl~~~i 232 (278)
...++..|++||||||++||.+.. ..+++...+
T Consensus 131 -------~~~~~~lad~~EAliGAiyld~g~~~~~~~i~~~~ 165 (252)
T 1o0w_A 131 -------RDRDSILADAFEALLAAIYLDQGYEKIKELFEQEF 165 (252)
T ss_dssp -------GGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred -------CCCccHHHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 124789999999999999999766 555555544
No 4
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=99.17 E-value=6.4e-11 Score=103.21 Aligned_cols=102 Identities=13% Similarity=0.134 Sum_probs=75.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHhhCC--CCChhHHHHHHHhHhchHHHHHHHHHh---hcCCCCCHHHHHHHHhhcCCCCC
Q 023707 117 FNAASLAYIGDCIYELYARRHFLFP--PLSIEEYNNRVMAVVRCETQDALLQKL---LNDSYLSAEERDVVRWGKNVGSA 191 (278)
Q Consensus 117 lspLaLAYLGDAVyELyVR~~LL~~--g~~v~~LHk~av~yVsAkAQA~ll~~L---le~~~LTEEE~~IvRRGRNaks~ 191 (278)
.+-..|+||||||++++|+.+++.. ..+...||+....+|+++.++.+.+.+ --+++| ++|++....
T Consensus 40 ~~nerLefLGDavL~~~v~~~L~~~~p~~~~g~Ls~~r~~lV~~~~la~~a~~l~~~gL~~~l--------~~~~~e~~~ 111 (242)
T 2a11_A 40 PTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHV--------LLGRGEANT 111 (242)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHSHHHHHHHHHHHSSSCSGGGC--------BCCHHHHHT
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCHHHHHHHHHHhhhhChHHHh--------hcCchhhhc
Confidence 3568999999999999999999943 457999999999999999999999988 211232 222221000
Q ss_pred CCCCCCCCChHHHhhhhhHHHHHHhHhcCcch--HHHHHHHHH
Q 023707 192 NTRTKRRAGAAVYNRASSLETLVSILVPCFSF--ISCQIAKCI 232 (278)
Q Consensus 192 ks~~pKnasv~~YR~ATGFEALIGYLYL~g~~--L~ELl~~~i 232 (278)
.....++..|++||||||++||.+.. ..+++...+
T Consensus 112 ------~~~~~~~~lad~~EAliGAiyld~g~~~~~~~i~~~~ 148 (242)
T 2a11_A 112 ------GGADKSSILADGMESLLGAIYLQHGMEKAREVILRLF 148 (242)
T ss_dssp ------TGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT
T ss_pred ------CCCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 01123789999999999999999766 556555554
No 5
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=99.15 E-value=1.4e-10 Score=99.86 Aligned_cols=86 Identities=13% Similarity=0.038 Sum_probs=72.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHhhCC--CCChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCC
Q 023707 118 NAASLAYIGDCIYELYARRHFLFP--PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRT 195 (278)
Q Consensus 118 spLaLAYLGDAVyELyVR~~LL~~--g~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~ 195 (278)
+-..|+|+||||++++|+.+++.. ..+...||+....+|++++++.+.+.+--+ +.+++|++..
T Consensus 35 ~nerLefLGDavL~~~v~~~L~~~~p~~~~g~Ls~~r~~lV~~~~la~~a~~l~l~--------~~l~~~~~~~------ 100 (221)
T 2nug_A 35 HYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLAQKLELH--------KFIRIKRGKI------ 100 (221)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHHHHHHHHHTTTGG--------GTCBSCTTCC------
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCHHHHHHHHHHcChH--------HhhccCCCcc------
Confidence 568999999999999999999954 457999999999999999999999888422 3557887662
Q ss_pred CCCCChHHHhhhhhHHHHHHhHhcCcch
Q 023707 196 KRRAGAAVYNRASSLETLVSILVPCFSF 223 (278)
Q Consensus 196 pKnasv~~YR~ATGFEALIGYLYL~g~~ 223 (278)
+ ++..|++||||||++||.+..
T Consensus 101 -~-----~~~lad~~EAliGAiyld~g~ 122 (221)
T 2nug_A 101 -N-----ETIIGDVFEALWAAVYIDSGR 122 (221)
T ss_dssp -C-----HHHHHHHHHHHHHHHHHHTTS
T ss_pred -c-----chHHHHHHHHHHHHHHHhCCC
Confidence 1 889999999999999998643
No 6
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B*
Probab=99.06 E-value=4.8e-10 Score=95.04 Aligned_cols=101 Identities=14% Similarity=0.166 Sum_probs=72.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHhhCC--CCChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCC
Q 023707 118 NAASLAYIGDCIYELYARRHFLFP--PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRT 195 (278)
Q Consensus 118 spLaLAYLGDAVyELyVR~~LL~~--g~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~ 195 (278)
+=-.|+|+||||++++|+.+++.. ..+...|++....+|+.++++.+.+.+-=++++.....+....||
T Consensus 59 ~neRLEfLGDaVL~l~vs~~L~~~~P~~~eg~Lt~~r~~lVs~~~La~ia~~lgL~~~l~~~~~~~~~~~~--------- 129 (170)
T 3o2r_A 59 NNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGK--------- 129 (170)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHSSHHHHHHHHHHTTGGGTCBCCHHHHHTTGG---------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHCHHHHHHHHHHcCcHHhhhcCcchhhcCCC---------
Confidence 346899999999999999999954 458999999999999999999999887433344321111111111
Q ss_pred CCCCChHHHhhhhhHHHHHHhHhcCcch--HHHHHHHHH
Q 023707 196 KRRAGAAVYNRASSLETLVSILVPCFSF--ISCQIAKCI 232 (278)
Q Consensus 196 pKnasv~~YR~ATGFEALIGYLYL~g~~--L~ELl~~~i 232 (278)
......|++||||||.+||.+.. ..+++...+
T Consensus 130 -----~~~~ilad~fEAliGAiylD~G~~~a~~~i~~~~ 163 (170)
T 3o2r_A 130 -----EKPSILSDALEAIIGAIHLEAGFEFAKTIALRLI 163 (170)
T ss_dssp -----GCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred -----CcchHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 12446899999999999998765 445444433
No 7
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=99.02 E-value=4.2e-10 Score=99.61 Aligned_cols=103 Identities=14% Similarity=0.148 Sum_probs=79.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHhhCC--CCChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCC
Q 023707 118 NAASLAYIGDCIYELYARRHFLFP--PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRT 195 (278)
Q Consensus 118 spLaLAYLGDAVyELyVR~~LL~~--g~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~ 195 (278)
+=--|+||||||.+++|..+++.. ..+...|++....+|+.++++.+.+.+--+++|...+.+...+||+.
T Consensus 59 ~neRLefLGDavL~~~v~~~L~~~~p~~~eg~Ls~~r~~lVs~~~La~~a~~lgL~~~l~~~~~e~~~~g~~~------- 131 (248)
T 3n3w_A 59 NNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEK------- 131 (248)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHSHHHHHHHHHHTTGGGTCBCCHHHHHTTGGGC-------
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCHHHHHHHHHHcCcHHHhhcCchhhhcCCCCC-------
Confidence 346899999999999999999853 45788999999999999999999998843456655444444555543
Q ss_pred CCCCChHHHhhhhhHHHHHHhHhcCcch--HHHHHHHHHHH
Q 023707 196 KRRAGAAVYNRASSLETLVSILVPCFSF--ISCQIAKCIMI 234 (278)
Q Consensus 196 pKnasv~~YR~ATGFEALIGYLYL~g~~--L~ELl~~~i~~ 234 (278)
.-..|++|||+||.+||.+.. ..+++...+.-
T Consensus 132 -------~~~lad~fEAliGAiyld~G~~~~~~~i~~~~~~ 165 (248)
T 3n3w_A 132 -------PSILSDALEAIIGAIHLEAGFEFAKTIALRLIEK 165 (248)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred -------ccHHHHHHHHHHHHHHHHCChHHHHHHHHHHHHH
Confidence 126899999999999998765 55666555544
No 8
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=98.93 E-value=3.7e-09 Score=92.88 Aligned_cols=106 Identities=17% Similarity=0.159 Sum_probs=75.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHhhCC--CCChhHHHHHHHhHhchHHHHHHHHHhhcCCCCC---HH----HHHHHH--hhc
Q 023707 118 NAASLAYIGDCIYELYARRHFLFP--PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS---AE----ERDVVR--WGK 186 (278)
Q Consensus 118 spLaLAYLGDAVyELyVR~~LL~~--g~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LT---EE----E~~IvR--RGR 186 (278)
|=.-|+||||||++++|..+|... ..+...|++....+|+.+.+|.+...+--+.+|. ++ +.++++ .||
T Consensus 49 ~neRLEfLGDaVL~l~v~~~L~~~~p~~~~g~Lt~lrs~lV~~~~La~~a~~lgl~~~l~~~~~~l~~~i~~f~~~~~~~ 128 (265)
T 3c4b_A 49 CYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEK 128 (265)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHSSHHHHHHHHHHTTGGGTCBCCCHHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhHHHHHHHHHcChHHHHHhcChhHHHHHHHHHHHHhhh
Confidence 457899999999999999999954 4579999999999999999999998874334443 22 344555 566
Q ss_pred CCCCCCC--------CCCCCCC-hHHHhhhhhHHHHHHhHhcCcch
Q 023707 187 NVGSANT--------RTKRRAG-AAVYNRASSLETLVSILVPCFSF 223 (278)
Q Consensus 187 Naks~ks--------~~pKnas-v~~YR~ATGFEALIGYLYL~g~~ 223 (278)
|...+.. ...++.+ ......|++||||||.+||.+..
T Consensus 129 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~laD~~EAliGAiylD~G~ 174 (265)
T 3c4b_A 129 NEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGM 174 (265)
T ss_dssp HC------------------CCSCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred hhhcchhHHhhhcchhhhhhcccccchHHHHHHHHHhhheeeecCC
Confidence 6421100 0012222 35688999999999999998653
No 9
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora}
Probab=97.78 E-value=8.1e-05 Score=66.90 Aligned_cols=91 Identities=11% Similarity=0.044 Sum_probs=63.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHhhC--CCCChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCC
Q 023707 118 NAASLAYIGDCIYELYARRHFLF--PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRT 195 (278)
Q Consensus 118 spLaLAYLGDAVyELyVR~~LL~--~g~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~ 195 (278)
+=--|+|+||||.++.|-.++.. +......|++.-...|+-+.-+.+.+.+- |. +.+++|......
T Consensus 128 ~nERLEfLGDaVL~l~vs~~L~~~~P~~~eG~Lt~lRs~lVsn~~La~iA~~lg----L~----~~l~~~~g~~~~---- 195 (246)
T 3rv1_A 128 SNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLN----FT----KRLQGNIATPTR---- 195 (246)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHSHHHHHHHHHHTT----SH----HHHCSSCC--------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHhCHHHHHHHHHHCC----cH----HHHhhcCCHhhh----
Confidence 45789999999999999999984 34679999999999999999998887762 21 234433211110
Q ss_pred CCCCChHHHhhhhhHHHHHHhHhcCc
Q 023707 196 KRRAGAAVYNRASSLETLVSILVPCF 221 (278)
Q Consensus 196 pKnasv~~YR~ATGFEALIGYLYL~g 221 (278)
+......=-.|..|||+||-+||.+
T Consensus 196 -~~~~~~~~ilAD~fEAlIGAIylD~ 220 (246)
T 3rv1_A 196 -VVKDKMSKRYADCVQAYIGALVIDR 220 (246)
T ss_dssp --------CHHHHHHHHHHHHHHHHH
T ss_pred -ccCcccccHHHHHHHHHHHHHhHcC
Confidence 0001112236899999999999997
No 10
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=97.55 E-value=0.00033 Score=65.28 Aligned_cols=91 Identities=13% Similarity=0.046 Sum_probs=65.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHhhC--CCCChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCC
Q 023707 118 NAASLAYIGDCIYELYARRHFLF--PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRT 195 (278)
Q Consensus 118 spLaLAYLGDAVyELyVR~~LL~--~g~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~ 195 (278)
+=--|+|+||||.+++|-.++.. +......|++.-..+|+.+.-+.+...+-=+++| ++|.....
T Consensus 128 ~nERLEfLGDavL~l~vs~~L~~~~P~~~eG~Lt~lr~~lVs~~~La~iA~~lgL~~~l--------~~~~g~~~----- 194 (341)
T 3rv0_A 128 SNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRL--------QGNIATPT----- 194 (341)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHSHHHHHHHHHHTTTTTTT--------CCSSCCC------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHhCHHHHHHHHHHcCcHHHh--------hhcCChhh-----
Confidence 44789999999999999999984 4568999999999999999999988887322232 22211100
Q ss_pred CCCCChHHHhhhhhHHHHHHhHhcCc
Q 023707 196 KRRAGAAVYNRASSLETLVSILVPCF 221 (278)
Q Consensus 196 pKnasv~~YR~ATGFEALIGYLYL~g 221 (278)
.+..+...=-.|.+|||+||-+||.+
T Consensus 195 ~~~~~~~~~ilaD~fEAlIGAIylD~ 220 (341)
T 3rv0_A 195 RVVKDKMSKRYADCVEAYIGALVIDR 220 (341)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCccccHHHHHHHHHHHHHhhcC
Confidence 11112334456899999999999986
No 11
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=96.48 E-value=0.0062 Score=62.22 Aligned_cols=88 Identities=10% Similarity=0.111 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhC--CCCChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCCCC
Q 023707 120 ASLAYIGDCIYELYARRHFLF--PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKR 197 (278)
Q Consensus 120 LaLAYLGDAVyELyVR~~LL~--~g~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~pK 197 (278)
--|.|+||||.++.|-.++.. +......|.+.-..+|+-+.-+.+.+++-. .| .+.++.|+.... +
T Consensus 648 eRLEfLGDaVL~l~vs~~L~~~~p~~~eG~Lt~lrs~lV~~~~La~~a~~lg~--~L----~~~l~~~~~e~~------~ 715 (756)
T 2qvw_A 648 QKLELLGDAFLKCSLALHLHALHPTLTEGALTRMRQSAETNSVLGRLTKRFPS--VV----SEVIIESHPKIQ------P 715 (756)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSHHHHHHHHHTSCT--HH----HHHHHHHSTTCC------T
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHhCChHHHHHHHHhcc--cH----HHHHhcCchhhc------C
Confidence 669999999999999999984 345799999999999999999887776610 01 134555543311 1
Q ss_pred CCChHHHhhhhhHHHHHHhHhcCcch
Q 023707 198 RAGAAVYNRASSLETLVSILVPCFSF 223 (278)
Q Consensus 198 nasv~~YR~ATGFEALIGYLYL~g~~ 223 (278)
+. =-.|..|||+||-+||.+..
T Consensus 716 ~~----kilaD~~EAliGAiylD~G~ 737 (756)
T 2qvw_A 716 DS----KVYGDTFEAILAAILLACGE 737 (756)
T ss_dssp TC----SHHHHHHHHHHHHHHHHHCH
T ss_pred Cc----cHHHHHHHHHHHHHHHhCCH
Confidence 11 13799999999999997653
No 12
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=95.81 E-value=0.028 Score=57.45 Aligned_cols=84 Identities=20% Similarity=0.248 Sum_probs=62.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHhhC--CCCChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCC
Q 023707 118 NAASLAYIGDCIYELYARRHFLF--PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRT 195 (278)
Q Consensus 118 spLaLAYLGDAVyELyVR~~LL~--~g~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~ 195 (278)
|=--|.|+||||.++.|=.+|.. +......|.+.-.++|+-+.=+++-+++-=++++ +-|+...
T Consensus 333 nnERLEfLGDavL~~~vs~~L~~~~P~~~eG~Ls~lRs~lVsn~~La~~A~~lgL~~~l--------~~~~~e~------ 398 (756)
T 2qvw_A 333 VFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLGLPQLA--------EFSNNLV------ 398 (756)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHSHHHHHHHHHHTTCTTTC--------BCCSCC-------
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCchHHHHHHHHcChHHHh--------ccCCCCC------
Confidence 45679999999999999999984 4457899999999999999988888877422222 2232221
Q ss_pred CCCCChHHHhhhhhHHHHHHhHhcC
Q 023707 196 KRRAGAAVYNRASSLETLVSILVPC 220 (278)
Q Consensus 196 pKnasv~~YR~ATGFEALIGYLYL~ 220 (278)
.+ .--.|.+|||+||-+||.
T Consensus 399 -~~----~~ilaD~~EAliGAiylD 418 (756)
T 2qvw_A 399 -AK----SKTWADMYEEIVGSIFTG 418 (756)
T ss_dssp --C----CCCHHHHHHHHHHHHHHS
T ss_pred -Cc----ccHHHhHHHHHhCccccc
Confidence 01 113588999999999996
No 13
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=41.93 E-value=8.3 Score=29.29 Aligned_cols=67 Identities=9% Similarity=0.039 Sum_probs=43.8
Q ss_pred HHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCCCCCCChHHHhhhhhHHHHHHhHhcCcch-HHHHHHH
Q 023707 163 ALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSILVPCFSF-ISCQIAK 230 (278)
Q Consensus 163 ~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~pKnasv~~YR~ATGFEALIGYLYL~g~~-L~ELl~~ 230 (278)
.++..|++.+.||++|.+.++.-.|.... .+..+=-+...-|=..||.+++-.|-=+|+. |.++++.
T Consensus 25 ~vld~L~~~~vlt~~~~e~I~~~~~~t~~-~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~lL~~ 92 (97)
T 3ygs_P 25 QLWDVLLSRELFRPHMIEDIQRAGSGSRR-DQARQLIIDLETRGSQALPLFISCLEDTGQDMLASFLRT 92 (97)
T ss_dssp TTHHHHHHTTSSCHHHHHHHHTSTTCCHH-HHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHhccCCChH-HHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHHHcc
Confidence 47888999999999999999986443110 0010112223334467899999888655666 7777654
No 14
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=33.04 E-value=9.7 Score=28.07 Aligned_cols=65 Identities=12% Similarity=0.159 Sum_probs=39.8
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCCCCCCChHHHhhhhhHHHHHHhHhcCcch-HHHHHH
Q 023707 162 DALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSILVPCFSF-ISCQIA 229 (278)
Q Consensus 162 A~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~pKnasv~~YR~ATGFEALIGYLYL~g~~-L~ELl~ 229 (278)
..++..|.+.+.||++|.+.++.. ++... +..+=-+...-|-..||+.++-.|-=++.. |.++++
T Consensus 25 ~~lld~L~~~~vlt~~~~e~I~~~-~t~~~--kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La~~L~ 90 (94)
T 2p1h_A 25 SYIMDHMISDGFLTISEEEKVRNE-PTQQQ--RAAMLIKMILKKDNDSYVSFYNALLHEGYKDLAALLH 90 (94)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHTS-SSHHH--HHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHG
T ss_pred HHHHHHHHHCCCCCHHHHHHHHcC-CChHH--HHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHHHHHh
Confidence 468889998899999999999986 22110 000111223334456777777777666664 555543
No 15
>2nz7_A NOD1, caspase recruitment domain-containing protein 4, CARD4; helix swapped, disulfide bond, apoptosis; 1.90A {Homo sapiens} PDB: 2nsn_A
Probab=26.25 E-value=53 Score=25.37 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=21.4
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHhhcCC
Q 023707 162 DALLQKLLNDSYLSAEERDVVRWGKNV 188 (278)
Q Consensus 162 A~ll~~Lle~~~LTEEE~~IvRRGRNa 188 (278)
..+++.|++.+.||+|| +.++++-++
T Consensus 30 ~~lLD~LL~~~VL~~ee-~~I~~~~~T 55 (98)
T 2nz7_A 30 QCLVDNLLKNDYFSAED-AEIVCACPT 55 (98)
T ss_dssp HHHHHHHHHTTSSCHHH-HHHHHTCCS
T ss_pred HHHHHHHHHcCCCCHHH-HHHHccCCC
Confidence 56788999999999999 888876454
No 16
>2v6z_M DNA polymerase epsilon subunit 2; DNA replication, DPOE2, transferase, AAA protein family; HET: DNA; NMR {Homo sapiens}
Probab=23.77 E-value=1e+02 Score=24.31 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=33.1
Q ss_pred hhhhHHHHHHhHhcCcch-HHHHHHHHHHHhccccCCCceee
Q 023707 206 RASSLETLVSILVPCFSF-ISCQIAKCIMIYSGGCTNGKLIK 246 (278)
Q Consensus 206 ~ATGFEALIGYLYL~g~~-L~ELl~~~i~~ie~~~~~~~~~~ 246 (278)
++-|++.|+++|.=.+.. +++.+..+++.+++...++..+.
T Consensus 46 r~dA~~~L~~~L~~~~~~e~e~~L~~Iid~lqkq~LsS~~Vd 87 (99)
T 2v6z_M 46 RGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSNMIE 87 (99)
T ss_dssp CHHHHHHHHHHTTTSCTTTHHHHHHHHHHHHTTSCCSSSEEC
T ss_pred cHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcCcccccc
Confidence 467888899999776664 99999999999988887776553
No 17
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=22.90 E-value=42 Score=26.53 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=16.1
Q ss_pred hhcCCCCCHHHHHHH----HhhcCCCC
Q 023707 168 LLNDSYLSAEERDVV----RWGKNVGS 190 (278)
Q Consensus 168 Lle~~~LTEEE~~Iv----RRGRNaks 190 (278)
|++...|||++...+ |||+|.-.
T Consensus 51 lL~~~~Lt~~Ql~lIrdiRRRgKNkvA 77 (90)
T 2lz1_A 51 MMSKEQFNEAQLALIRDIRRRGKNKVA 77 (90)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHSCSCCC
T ss_pred HHHHcCCCHHHHHHHHHHHHhhhhHHH
Confidence 444457999997655 89999643
No 18
>3e7j_A Heparinase II protein; alpha and beta lyase, alpha6/alpha6 incomplete toroid, sugar protein, lyase; HET: NAG GCU GCD; 2.10A {Pedobacter heparinus} PDB: 3e80_A* 2fut_A* 2fuq_A*
Probab=21.94 E-value=67 Score=32.76 Aligned_cols=63 Identities=11% Similarity=0.039 Sum_probs=38.4
Q ss_pred CChhHHHHH--HHHHHHHHHHHHhhC----CC-CChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHH
Q 023707 117 FNAASLAYI--GDCIYELYARRHFLF----PP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVR 183 (278)
Q Consensus 117 lspLaLAYL--GDAVyELyVR~~LL~----~g-~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvR 183 (278)
+..++|||+ ||.-|--.+++.|+. .. ..+.++...+.....+- |.++..|- +.||++|++.++
T Consensus 85 l~~LalAylLtgD~ryad~a~~~L~~~~~~~~W~~~~Dl~~~~a~~~~~l--A~aYD~Ly--d~Ls~eeR~~Ir 154 (749)
T 3e7j_A 85 VELMALNYLMTKDPKVGREAITSIIDTLETATFKPAGDISRGIGLFMVTG--AIVYDWCY--DQLKPEEKTRFV 154 (749)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCTTTHHHHHHHHHHH--HHHHHHTG--GGCCHHHHHHHH
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHhhcccCCCcccchHHHHHHHHHH--HHHHHHHh--hhCCHHHHHHHH
Confidence 567888886 898888888887753 11 11233333233333333 34466665 689999987554
No 19
>1b4u_A LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: a.88.1.1 PDB: 1bou_A
Probab=21.31 E-value=1.3e+02 Score=25.20 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=26.2
Q ss_pred HHHHHHhHhchHHHHHHH---HHhhcCCCCCHHHHHHHHhh
Q 023707 148 YNNRVMAVVRCETQDALL---QKLLNDSYLSAEERDVVRWG 185 (278)
Q Consensus 148 LHk~av~yVsAkAQA~ll---~~Lle~~~LTEEE~~IvRRG 185 (278)
+|+...++..++...++. +.++++.-|||||++.++.|
T Consensus 37 LNkf~~sL~~~~~RerF~aDpeA~l~~~gLTeEEr~AV~~r 77 (139)
T 1b4u_A 37 LNQFAMSLMKAENRERFKADESAYLDEWNLTPAAKAAVLAR 77 (139)
T ss_dssp HHHHHHHTTSHHHHHHHHHCHHHHHHTTTCCHHHHHHHHHT
T ss_pred HHHHHHHHCCHHHHHHHHhCHHHHHHHcCCCHHHHHHHHcC
Confidence 455555666666555553 24556678999999999876
No 20
>4e9m_A Nucleotide-binding oligomerization domain-contain protein 1; innate immunity, RIPK2, protein binding; HET: FLC; 2.15A {Homo sapiens} PDB: 2b1w_A 2dbd_A
Probab=20.94 E-value=57 Score=27.62 Aligned_cols=22 Identities=36% Similarity=0.652 Sum_probs=19.8
Q ss_pred HHHHHhhcCCCCCHHHHHHHHh
Q 023707 163 ALLQKLLNDSYLSAEERDVVRW 184 (278)
Q Consensus 163 ~ll~~Lle~~~LTEEE~~IvRR 184 (278)
-+|+.|++.++||.||.++++.
T Consensus 45 ~LLD~LL~~gvLs~EE~EiV~~ 66 (144)
T 4e9m_A 45 CLVDNLLKNDYFSAEDAEIVCA 66 (144)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHT
T ss_pred HHHHHHHHcCCCCHHHHHHHhc
Confidence 6799999999999999999955
Done!