BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>023709
MVVLSLQVVRFPTPPYQISLRRQSTDKITRCGIAEPSGEPAPLGQKTKYNDGFFEKAFMT
LFARKMEKFASPAKSKTETKKKRWFDFGYDYESFVDVSKRVMEGRSRQQQQEVVREVLLS
MLPPGAPAQFRKLFPPTKWAAEFNAALTVPFFHWLVGPSEVVEVEINGEKQRSGVHIKKC
SKAEMLIAIFDNRLRYLENSGCVGMCVNMCKFPTQDFFTREFGLPLTMIPNFEDMSCEMV
YGQVPPSFEDDPVSTQPCFTDICSNANPSSPVCPKLQA

High Scoring Gene Products

Symbol, full name Information P value
AT1G64680 protein from Arabidopsis thaliana 2.8e-73
D27
AT1G03055
protein from Arabidopsis thaliana 8.8e-31
AT4G01995 protein from Arabidopsis thaliana 2.1e-22

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  023709
        (278 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2010856 - symbol:AT1G64680 "AT1G64680" species...   740  2.8e-73   1
TAIR|locus:505006097 - symbol:D27 "AT1G03055" species:370...   339  8.8e-31   1
TAIR|locus:504955232 - symbol:AT4G01995 "AT4G01995" speci...   260  2.1e-22   1


>TAIR|locus:2010856 [details] [associations]
            symbol:AT1G64680 "AT1G64680" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009534 "chloroplast
            thylakoid" evidence=IDA] [GO:0009941 "chloroplast envelope"
            evidence=IDA] [GO:0016556 "mRNA modification" evidence=RCA]
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009941 EMBL:AC009519
            GO:GO:0009534 HOGENOM:HOG000242549 InterPro:IPR025114 Pfam:PF13225
            EMBL:BT010194 EMBL:AK226297 IPI:IPI00535028 PIR:H96669
            RefSeq:NP_564838.1 UniGene:At.28247 STRING:Q9SGU7 PaxDb:Q9SGU7
            PRIDE:Q9SGU7 EnsemblPlants:AT1G64680.1 GeneID:842776
            KEGG:ath:AT1G64680 TAIR:At1g64680 eggNOG:NOG29740 InParanoid:Q9SGU7
            OMA:FMGLFAR PhylomeDB:Q9SGU7 ProtClustDB:CLSN2917382
            Genevestigator:Q9SGU7 Uniprot:Q9SGU7
        Length = 250

 Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
 Identities = 139/206 (67%), Positives = 158/206 (76%)

Query:    73 AKSKTETKKKRWFDFGYDYESFVDVSKRVMEGXXXXXXXXXXXXXXXXMLPPGAPAQFRK 132
             +K K +TK+K +++  YDYESFV+VSKRVM+G                MLPPGAP QFRK
Sbjct:    61 SKKKKDTKEKGFWE--YDYESFVEVSKRVMQGRSRVQQQEAVREVLLSMLPPGAPEQFRK 118

Query:   133 LFPPTKWAAEFNAALTVPFFHWLVGPSEVVEVEINGEKQRSGVHIKKCSKAEMLIAIFDN 192
             LFPPTKWAAEFNAALTVPFFHWLVGPS+V+EVE+NG KQRSGV IKKC            
Sbjct:   119 LFPPTKWAAEFNAALTVPFFHWLVGPSQVIEVEVNGVKQRSGVRIKKC------------ 166

Query:   193 RLRYLENSGCVGMCVNMCKFPTQDFFTREFGLPLTMIPNFEDMSCEMVYGQVPPSFEDDP 252
               RYLENSGCVGMCVNMCK PTQDFFT EFGLPLTM PN+EDMSCEM+YGQ PP+FE+D 
Sbjct:   167 --RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNYEDMSCEMIYGQAPPAFEEDV 224

Query:   253 VSTQPCFTDICSNANPSSPVCPKLQA 278
              + QPC  DICS +NPSSP+CPKL+A
Sbjct:   225 ATKQPCLADICSMSNPSSPICPKLEA 250

 Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
 Identities = 109/167 (65%), Positives = 126/167 (75%)

Query:    18 ISLRRQSTDKITRCGIAEPSGEPAPLGQKTKYNDGFFEKAFMTLFARKMEKFASPAKSKT 77
             ++ RR+ST    RCGIAEPSGEPAP+G KT+Y DG  E+ FM LFARKM+KF S  K K 
Sbjct:    12 LTFRRRST----RCGIAEPSGEPAPMGLKTRYEDGLVERVFMGLFARKMDKFGS--KKKK 65

Query:    78 ETKKKRWFDFGYDYESFVDVSKRVMEGXXXXXXXXXXXXXXXXMLPPGAPAQFRKLFPPT 137
             +TK+K +++  YDYESFV+VSKRVM+G                MLPPGAP QFRKLFPPT
Sbjct:    66 DTKEKGFWE--YDYESFVEVSKRVMQGRSRVQQQEAVREVLLSMLPPGAPEQFRKLFPPT 123

Query:   138 KWAAEFNAALTVPFFHWLVGPSEVVEVEINGEKQRSGVHIKKCSKAE 184
             KWAAEFNAALTVPFFHWLVGPS+V+EVE+NG KQRSGV IKKC   E
Sbjct:   124 KWAAEFNAALTVPFFHWLVGPSQVIEVEVNGVKQRSGVRIKKCRYLE 170


>TAIR|locus:505006097 [details] [associations]
            symbol:D27 "AT1G03055" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0009536 "plastid" evidence=IDA]
            [GO:0010223 "secondary shoot formation" evidence=IMP] [GO:1901601
            "strigolactone biosynthetic process" evidence=IGI] EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0009536 GO:GO:0010223
            UniGene:At.42563 UniGene:At.51465 EMBL:BT010155 IPI:IPI00528297
            RefSeq:NP_563673.1 EnsemblPlants:AT1G03055.1 GeneID:838334
            KEGG:ath:AT1G03055 TAIR:At1g03055 eggNOG:NOG327291
            HOGENOM:HOG000242549 InParanoid:Q7XA78 OMA:SNCVGMC PhylomeDB:Q7XA78
            ProtClustDB:CLSN2687636 Genevestigator:Q7XA78 GO:GO:1901601
            InterPro:IPR025114 Pfam:PF13225 Uniprot:Q7XA78
        Length = 264

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 69/176 (39%), Positives = 94/176 (53%)

Query:    90 DYESFVDVSKRVMEGXXXXXXXXXXXXXXXXMLPPGAPAQFRKLFPPTKWAAEFNAALTV 149
             DY+  VD + RV                    LP    +  +  FPP+K + E  A  T 
Sbjct:    96 DYDRLVDTATRVSRNFDTKQQHEFVLSSLDRALPTVISSLIKMAFPPSKVSRELFALFTT 155

Query:   150 PFFHWLVGPSEVVEVEINGEKQRSGVHIKKCSKAEMLIAIFDNRLRYLENSGCVGMCVNM 209
               F WLVGPSEV E E+NG K++S V+I+KC              R+LE S CVGMC ++
Sbjct:   156 ISFAWLVGPSEVRETEVNGRKEKSVVYIEKC--------------RFLEQSNCVGMCTHI 201

Query:   210 CKFPTQDFFTREFGLPLTMIPNFEDMSCEMVYGQVPPSFEDDPVSTQPCFTDICSN 265
             CK P+Q F     G+P+ M P+F D+SC+M++G+ PP  EDDP   QPCF + C +
Sbjct:   202 CKIPSQIFIKNSLGMPIYMEPDFNDLSCKMMFGREPPEIEDDPAMKQPCF-EFCKS 256

 Score = 163 (62.4 bits), Expect = 2.1e-10, P = 2.1e-10
 Identities = 41/130 (31%), Positives = 58/130 (44%)

Query:    51 DGFFEKAFMTLFARKMEKFASPAKSKTETKKKRWFDFGYDYESFVDVSKRVMEGXXXXXX 110
             D FF K  +   ++ ++  A  + S   T          DY+  VD + RV         
Sbjct:    67 DSFFSKIAINYLSKNLQDAAGISSSSKST----------DYDRLVDTATRVSRNFDTKQQ 116

Query:   111 XXXXXXXXXXMLPPGAPAQFRKLFPPTKWAAEFNAALTVPFFHWLVGPSEVVEVEINGEK 170
                        LP    +  +  FPP+K + E  A  T   F WLVGPSEV E E+NG K
Sbjct:   117 HEFVLSSLDRALPTVISSLIKMAFPPSKVSRELFALFTTISFAWLVGPSEVRETEVNGRK 176

Query:   171 QRSGVHIKKC 180
             ++S V+I+KC
Sbjct:   177 EKSVVYIEKC 186


>TAIR|locus:504955232 [details] [associations]
            symbol:AT4G01995 "AT4G01995" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] EMBL:CP002687 GenomeReviews:CT486007_GR
            UniGene:At.43223 InterPro:IPR025114 Pfam:PF13225 EMBL:AY062663
            EMBL:AY093324 IPI:IPI00517905 RefSeq:NP_680560.1 UniGene:At.27269
            PRIDE:Q8W4C4 EnsemblPlants:AT4G01995.1 GeneID:828173
            KEGG:ath:AT4G01995 TAIR:At4g01995 eggNOG:NOG298641
            HOGENOM:HOG000012571 InParanoid:Q8W4C4 OMA:CKLPTQT PhylomeDB:Q8W4C4
            ProtClustDB:CLSN2690274 Genevestigator:Q8W4C4 Uniprot:Q8W4C4
        Length = 258

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 68/192 (35%), Positives = 94/192 (48%)

Query:    91 YESFVDVSKRVM-EGXXXXXXXXXXXXXXXXMLPPGAPAQFRKLFPPT---KWAAEFNAA 146
             Y   +++ K ++ +G                + PP     ++ L  P    K AA   A 
Sbjct:    82 YVGLIELVKLLLLKGRTRSETSDAAVRILKSLFPPLILELYKLLIAPIAQGKLAALMVAR 141

Query:   147 LTVPFFHWLVGPSEVVEVEI-NGEKQRSGVHIKKCSKAEMLIAIFDNRLRYLENSGCVGM 205
             +TV    WL+GPS+V  +++ NGE   SGV ++KC              +YLE S CVG+
Sbjct:   142 VTVLTCQWLMGPSKVNIIDLPNGESWDSGVFVEKC--------------QYLEESKCVGV 187

Query:   206 CVNMCKFPTQDFFTREFGLPLTMIPNFEDMSCEMVYGQVPPSFEDDPVSTQPCFTDICSN 265
             C+N CK PTQ FF    G+PL M PNF+D SC+  +G  PP  EDD    +PCF + CS 
Sbjct:   188 CINTCKLPTQTFFKDYMGVPLVMEPNFKDYSCQFKFGVAPP--EDDGNVNEPCF-ETCSI 244

Query:   266 ANP---SSPVCP 274
             A      S  CP
Sbjct:   245 AGRRKLKSGECP 256


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.428    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      278       262   0.00091  114 3  11 22  0.44    33
                                                     32  0.49    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  212 KB (2118 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.47u 0.11s 21.58t   Elapsed:  00:00:01
  Total cpu time:  21.47u 0.11s 21.58t   Elapsed:  00:00:01
  Start:  Fri May 10 16:33:14 2013   End:  Fri May 10 16:33:15 2013

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