BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023709
         (278 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|C0QVC0|GLPK_BRAHW Glycerol kinase OS=Brachyspira hyodysenteriae (strain ATCC 49526 /
           WA1) GN=glpK PE=3 SV=1
          Length = 494

 Score = 35.8 bits (81), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 12/87 (13%)

Query: 178 KKCSKAEMLIAIFDNRLRYLENSGCVG----------MCVNMCKFPTQDFFTREFGLPLT 227
           +K +K E+L    D  L +    G V           M  N+ +    +   +E  +P++
Sbjct: 152 EKANKGELLFGTIDTWLVWKLTGGKVHVTDYTNASRTMIYNIKELKWDETILKELDIPMS 211

Query: 228 MIPNFEDMSCEMVYGQVPPSFEDDPVS 254
           M+P  +D SC  +YG    + ++ P+S
Sbjct: 212 MLPEVKDSSC--IYGYAHINGKEVPIS 236


>sp|Q5HBT2|HTPG_EHRRW Chaperone protein HtpG OS=Ehrlichia ruminantium (strain
           Welgevonden) GN=htpG PE=3 SV=1
          Length = 637

 Score = 33.1 bits (74), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 27/57 (47%)

Query: 32  GIAEPSGEPAPLGQKTKYNDGFFEKAFMTLFARKMEKFASPAKSKTETKKKRWFDFG 88
           GI + S  P  + ++T  N+   EK   +L  R + +    A+S  E   K W +FG
Sbjct: 322 GIIDSSDLPLNISRETLQNNKIIEKIKRSLVKRVLSELKKKAESNIEDYTKFWDNFG 378


>sp|Q5FHC4|HTPG_EHRRG Chaperone protein HtpG OS=Ehrlichia ruminantium (strain Gardel)
           GN=htpG PE=3 SV=1
          Length = 637

 Score = 33.1 bits (74), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 27/57 (47%)

Query: 32  GIAEPSGEPAPLGQKTKYNDGFFEKAFMTLFARKMEKFASPAKSKTETKKKRWFDFG 88
           GI + S  P  + ++T  N+   EK   +L  R + +    A+S  E   K W +FG
Sbjct: 322 GIIDSSDLPLNISRETLQNNKIIEKIKRSLVKRVLSELKKKAESNIEDYTKFWDNFG 378


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.136    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,275,266
Number of Sequences: 539616
Number of extensions: 4516969
Number of successful extensions: 9008
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 9004
Number of HSP's gapped (non-prelim): 7
length of query: 278
length of database: 191,569,459
effective HSP length: 116
effective length of query: 162
effective length of database: 128,974,003
effective search space: 20893788486
effective search space used: 20893788486
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)