Query 023709
Match_columns 278
No_of_seqs 93 out of 95
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 11:27:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023709.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023709hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hm3_A Nematocyst outer WALL a 35.0 14 0.00046 24.0 1.1 13 199-211 9-21 (31)
2 2nx7_A Nematocyst outer WALL a 23.9 21 0.0007 22.7 0.4 16 197-212 7-22 (28)
3 3j16_B RLI1P; ribosome recycli 22.4 16 0.00056 36.0 -0.4 13 200-213 56-68 (608)
4 2lyy_A Uncharacterized protein 16.3 1.4E+02 0.0048 23.5 3.8 41 91-153 11-53 (96)
5 3e07_A Protein spaetzle; cysti 15.6 57 0.0019 26.3 1.4 14 167-180 34-47 (114)
6 3e6q_A Putative 5-carboxymethy 15.2 11 0.00036 31.2 -3.0 30 92-121 80-109 (146)
7 3or1_B Sulfite reductase beta; 14.0 68 0.0023 29.8 1.7 12 200-212 259-270 (386)
8 2auv_A Potential NAD-reducing 13.4 56 0.0019 23.5 0.8 13 196-208 47-59 (85)
9 3v53_A RNA-binding protein 25; 13.2 1.8E+02 0.0062 23.6 3.8 70 48-134 37-107 (119)
10 3m92_A Protein YCIN; DUF2498, 12.2 65 0.0022 26.1 0.9 14 167-180 56-69 (107)
No 1
>2hm3_A Nematocyst outer WALL antigen; disulfide, evolution, cysteine rich, structural protein; NMR {Hydra vulgaris} PDB: 2hm4_A 2hm5_A 2hm6_A
Probab=35.04 E-value=14 Score=23.97 Aligned_cols=13 Identities=54% Similarity=1.132 Sum_probs=11.8
Q ss_pred ccCcccccccccc
Q 023709 199 NSGCVGMCVNMCK 211 (278)
Q Consensus 199 eSgC~GmCvN~CK 211 (278)
-|||.|-|-.-||
T Consensus 9 psgcsgdcypeck 21 (31)
T 2hm3_A 9 PSGCSGDCYPECK 21 (31)
T ss_dssp CTTCCGGGTTTTC
T ss_pred CCCcCccccCccC
Confidence 3999999999998
No 2
>2nx7_A Nematocyst outer WALL antigen; cysteine rich, disulfide bonds, rich in turns, structural protein; NMR {Hydra vulgaris}
Probab=23.87 E-value=21 Score=22.67 Aligned_cols=16 Identities=31% Similarity=1.036 Sum_probs=14.2
Q ss_pred ecccCccccccccccC
Q 023709 197 LENSGCVGMCVNMCKF 212 (278)
Q Consensus 197 LEeSgC~GmCvN~CK~ 212 (278)
|++.||.+.|..-|.+
T Consensus 7 lqqpgcssacapacrl 22 (28)
T 2nx7_A 7 LQQPGCSSACAPACRL 22 (28)
T ss_dssp HHSTTCCGGGTTTCCH
T ss_pred ccCCCccccccchhhe
Confidence 7889999999999976
No 3
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=22.40 E-value=16 Score=35.97 Aligned_cols=13 Identities=54% Similarity=1.456 Sum_probs=11.1
Q ss_pred cCccccccccccCC
Q 023709 200 SGCVGMCVNMCKFP 213 (278)
Q Consensus 200 SgC~GmCvN~CK~P 213 (278)
.|| |+||+-|++=
T Consensus 56 ~~~-~~~~~~cp~~ 68 (608)
T 3j16_B 56 IGC-GICVKKCPFD 68 (608)
T ss_dssp CCC-CHHHHHCSSC
T ss_pred ccc-ccccccCCcc
Confidence 677 8999999974
No 4
>2lyy_A Uncharacterized protein; DUF3144, PF11342, structural genomics, unknown function; NMR {Shewanella oneidensis}
Probab=16.26 E-value=1.4e+02 Score=23.46 Aligned_cols=41 Identities=10% Similarity=0.182 Sum_probs=25.6
Q ss_pred hhhHHHHHHHHhcCCC--HHHHHHHHHHHHHhcCCCChHHHHHhhcCCchhHHHHHhhhhhhhhh
Q 023709 91 YESFVDVSKRVMEGRS--RQQQQEVVREVLLSMLPPGAPAQFRKLFPPTKWAAEFNAALTVPFFH 153 (278)
Q Consensus 91 YeglVd~a~~~m~grs--~~~q~~~v~~vL~sl~Pp~~~~~fr~lfpp~k~aae~nA~~T~~~f~ 153 (278)
=|.||++|+....+.. +-+-..+. |+ =++++||+++...|.
T Consensus 11 AD~fI~lAN~q~~~~e~~~g~Vsas~------------------ly----AaARfnAfv~a~~~~ 53 (96)
T 2lyy_A 11 ATELIKLANQQNQNTEIQTGEVSASF------------------MW----ALARYNAWFGSTSFE 53 (96)
T ss_dssp HHHHHHHHHHHHTSTTSCHHHHHHHH------------------HH----HHHHHSGGGGGGTCS
T ss_pred HHHHHHHHHHhhcccCcccchHHHHH------------------HH----HHHHHHHHHHHHhcc
Confidence 4789999998776543 22322222 22 268899998876553
No 5
>3e07_A Protein spaetzle; cystine knot, TOLL ligand, antimicrobial, cytokine, developm protein, fungicide, glycoprotein, secreted; 2.40A {Drosophila melanogaster}
Probab=15.60 E-value=57 Score=26.27 Aligned_cols=14 Identities=21% Similarity=0.762 Sum_probs=9.9
Q ss_pred cCeeeeccEEEeec
Q 023709 167 NGEKQRSGVHIKKC 180 (278)
Q Consensus 167 ~G~~q~sgV~I~KC 180 (278)
|-..-.++|+||+|
T Consensus 34 N~~~y~Q~vriE~C 47 (114)
T 3e07_A 34 NNDEYKQAIQIEEC 47 (114)
T ss_dssp --CCCEEEEEEEEE
T ss_pred eCCCcEEEEEEEEe
Confidence 33445689999999
No 6
>3e6q_A Putative 5-carboxymethyl-2-hydroxymuconate isomer; structural genomics, APC7683, isomerase, PSI-2, protein STRU initiative; HET: GOL IMD; 1.75A {Pseudomonas aeruginosa}
Probab=15.24 E-value=11 Score=31.24 Aligned_cols=30 Identities=10% Similarity=0.323 Sum_probs=24.5
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 023709 92 ESFVDVSKRVMEGRSRQQQQEVVREVLLSM 121 (278)
Q Consensus 92 eglVd~a~~~m~grs~~~q~~~v~~vL~sl 121 (278)
++||-+.-+++.|||.+|-++++..|+..+
T Consensus 80 ~~FVhV~i~ll~GRt~EqK~~L~e~v~~al 109 (146)
T 3e6q_A 80 RAYLHACLSILDGRDAATRQALGESLCEVL 109 (146)
T ss_dssp CCEEEEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 579999989999999999988886665543
No 7
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=13.95 E-value=68 Score=29.81 Aligned_cols=12 Identities=42% Similarity=0.952 Sum_probs=10.0
Q ss_pred cCccccccccccC
Q 023709 200 SGCVGMCVNMCKF 212 (278)
Q Consensus 200 SgC~GmCvN~CK~ 212 (278)
-+| |.|+|.|+.
T Consensus 259 i~C-g~C~~~CP~ 270 (386)
T 3or1_B 259 MYC-GNCYTMCPA 270 (386)
T ss_dssp CCC-CHHHHHCTT
T ss_pred Ccc-ccHHHhCcH
Confidence 677 889999974
No 8
>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin, thiordoxin-like, oxidoreductase; NMR {Desulfovibrio fructosovorans}
Probab=13.37 E-value=56 Score=23.47 Aligned_cols=13 Identities=31% Similarity=0.708 Sum_probs=10.6
Q ss_pred eecccCccccccc
Q 023709 196 YLENSGCVGMCVN 208 (278)
Q Consensus 196 yLEeSgC~GmCvN 208 (278)
-|+.+||.|.|-+
T Consensus 47 ~l~~~~ClG~C~~ 59 (85)
T 2auv_A 47 SIDTLRCVGGCAL 59 (85)
T ss_dssp CCBSSSSSSSCTT
T ss_pred EEEECCccCcCCC
Confidence 3788999999963
No 9
>3v53_A RNA-binding protein 25; PWI, RNA-binding domain; 2.90A {Homo sapiens}
Probab=13.16 E-value=1.8e+02 Score=23.63 Aligned_cols=70 Identities=17% Similarity=0.108 Sum_probs=49.1
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHcCCCCcchhhhhcccccCCCChhhHHHHHHHH-hcCCCHHHHHHHHHHHHHhcCCCCh
Q 023709 48 KYNDGFFEKAFMTLFARKMEKFASPAKSKTETKKKRWFDFGYDYESFVDVSKRV-MEGRSRQQQQEVVREVLLSMLPPGA 126 (278)
Q Consensus 48 ~Y~D~~lD~~~m~lF~rkm~~~~G~~~~~~~~~k~~~~~~~~gYeglVd~a~~~-m~grs~~~q~~~v~~vL~sl~Pp~~ 126 (278)
.|+++.+|+-+--+-.+|+.+.+|.. =+.+||..-.. ....++++-++-+..+|..=-...+
T Consensus 37 ~vd~~~i~~~lkPWI~kKI~E~LG~e-----------------Ed~LVdfI~~~L~~~~~pk~l~~~L~~~LDeeA~~FV 99 (119)
T 3v53_A 37 IVDSILMERRIRPWINKKIIEYIGEE-----------------EATLVDFVCSKVMAHSSPQSILDDVAMVLDEEAEVFI 99 (119)
T ss_dssp TSCHHHHHHTHHHHHHHHHHHHTC--------------------CHHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCc-----------------hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHH
Confidence 45667888888899999999999952 14578876654 4567888888888888877544444
Q ss_pred HHHHHhhc
Q 023709 127 PAQFRKLF 134 (278)
Q Consensus 127 ~~~fr~lf 134 (278)
-.++|.|+
T Consensus 100 ~kLWrlLI 107 (119)
T 3v53_A 100 VKMWRLLI 107 (119)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45555443
No 10
>3m92_A Protein YCIN; DUF2498, structural genomics, PSI-2, protein structure initi midwest center for structural genomics, MCSG, unknown funct; HET: MSE; 2.05A {Shigella flexneri 2A}
Probab=12.25 E-value=65 Score=26.11 Aligned_cols=14 Identities=36% Similarity=0.468 Sum_probs=11.9
Q ss_pred cCeeeeccEEEeec
Q 023709 167 NGEKQRSGVHIKKC 180 (278)
Q Consensus 167 ~G~~q~sgV~I~KC 180 (278)
+++.|+.||.|-|=
T Consensus 56 ~~Veqk~~VLVFkG 69 (107)
T 3m92_A 56 TGVTQRNGVLVFTG 69 (107)
T ss_dssp EEEEESSSCEEEEE
T ss_pred cceeeeCCEEEEec
Confidence 46678999999998
Done!