Query 023712
Match_columns 278
No_of_seqs 206 out of 1361
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 06:05:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023712.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023712hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 1.4E-81 3.1E-86 605.9 20.6 256 18-276 31-300 (524)
2 PLN02998 beta-glucosidase 100.0 8.5E-78 1.8E-82 589.1 22.7 249 18-269 25-285 (497)
3 PLN02849 beta-glucosidase 100.0 3E-77 6.5E-82 585.9 23.3 249 16-269 22-281 (503)
4 COG2723 BglB Beta-glucosidase/ 100.0 4.7E-77 1E-81 570.3 22.5 243 22-269 2-248 (460)
5 PLN02814 beta-glucosidase 100.0 1.4E-76 2.9E-81 581.4 22.9 250 19-276 23-284 (504)
6 PRK13511 6-phospho-beta-galact 100.0 3.8E-76 8.3E-81 575.2 22.6 242 22-276 3-247 (469)
7 TIGR01233 lacG 6-phospho-beta- 100.0 2.3E-75 5E-80 569.1 22.9 237 22-269 2-241 (467)
8 PRK09593 arb 6-phospho-beta-gl 100.0 1.1E-74 2.4E-79 565.6 23.0 241 21-266 3-261 (478)
9 PRK09589 celA 6-phospho-beta-g 100.0 1.7E-74 3.6E-79 564.1 22.4 242 23-269 3-263 (476)
10 PRK15014 6-phospho-beta-glucos 100.0 9.8E-74 2.1E-78 558.5 23.4 243 19-266 1-262 (477)
11 PF00232 Glyco_hydro_1: Glycos 100.0 1.3E-74 2.9E-79 562.8 15.7 241 22-269 3-247 (455)
12 PRK09852 cryptic 6-phospho-bet 100.0 6.2E-72 1.3E-76 545.2 23.4 233 23-260 3-251 (474)
13 TIGR03356 BGL beta-galactosida 100.0 4.7E-71 1E-75 534.0 22.4 239 24-269 1-241 (427)
14 PF02449 Glyco_hydro_42: Beta- 99.5 1.7E-13 3.6E-18 130.7 8.4 108 77-189 10-140 (374)
15 PF00150 Cellulase: Cellulase 99.4 5.3E-13 1.2E-17 120.2 9.9 109 78-190 22-134 (281)
16 smart00633 Glyco_10 Glycosyl h 98.9 9.4E-09 2E-13 93.2 8.7 84 98-190 1-86 (254)
17 COG1874 LacA Beta-galactosidas 98.8 1.1E-08 2.3E-13 103.9 7.4 119 78-201 31-176 (673)
18 COG2730 BglC Endoglucanase [Ca 98.4 9.1E-07 2E-11 85.7 9.4 110 80-189 76-193 (407)
19 PF00331 Glyco_hydro_10: Glyco 98.1 3.5E-05 7.5E-10 72.4 10.9 123 24-190 6-137 (320)
20 PF01229 Glyco_hydro_39: Glyco 98.0 2.5E-05 5.5E-10 77.3 9.4 107 79-190 41-168 (486)
21 PF01301 Glyco_hydro_35: Glyco 97.8 7.7E-05 1.7E-09 70.2 9.0 110 77-188 24-151 (319)
22 PF07745 Glyco_hydro_53: Glyco 97.4 0.0057 1.2E-07 58.0 14.6 141 80-247 27-177 (332)
23 PLN03059 beta-galactosidase; P 97.2 0.0042 9.2E-08 64.9 12.6 108 77-187 59-187 (840)
24 PF13204 DUF4038: Protein of u 97.0 0.004 8.7E-08 57.8 9.3 103 80-187 33-156 (289)
25 PF01373 Glyco_hydro_14: Glyco 97.0 0.0015 3.3E-08 63.0 6.3 106 76-188 15-151 (402)
26 PF02836 Glyco_hydro_2_C: Glyc 96.8 0.0076 1.6E-07 55.6 9.6 93 76-188 35-133 (298)
27 PLN00197 beta-amylase; Provisi 96.8 0.0047 1E-07 61.5 8.2 107 77-189 127-272 (573)
28 PLN02803 beta-amylase 96.8 0.0046 9.9E-08 61.4 7.9 107 77-189 107-252 (548)
29 PLN02161 beta-amylase 96.8 0.0053 1.2E-07 60.6 8.1 111 73-189 113-262 (531)
30 PF14587 Glyco_hydr_30_2: O-Gl 96.7 0.0038 8.3E-08 59.9 6.8 101 87-189 57-185 (384)
31 PLN02801 beta-amylase 96.7 0.008 1.7E-07 59.4 8.8 99 76-178 36-173 (517)
32 COG3693 XynA Beta-1,4-xylanase 96.7 0.0047 1E-07 57.9 6.9 87 96-189 65-153 (345)
33 PRK10150 beta-D-glucuronidase; 96.4 0.014 3E-07 59.4 8.7 94 77-188 313-419 (604)
34 PF14488 DUF4434: Domain of un 96.3 0.028 6E-07 48.1 8.9 103 77-189 20-132 (166)
35 PLN02905 beta-amylase 96.2 0.021 4.5E-07 57.8 8.9 100 74-177 283-421 (702)
36 PLN02705 beta-amylase 96.2 0.018 3.8E-07 58.1 8.2 98 76-177 267-403 (681)
37 PRK09525 lacZ beta-D-galactosi 94.7 0.11 2.5E-06 56.1 8.6 93 76-188 370-464 (1027)
38 KOG0496 Beta-galactosidase [Ca 94.7 0.2 4.3E-06 51.1 9.5 109 77-188 49-176 (649)
39 PRK10340 ebgA cryptic beta-D-g 93.6 0.27 5.8E-06 53.3 8.7 89 76-187 354-450 (1021)
40 COG3250 LacZ Beta-galactosidas 93.2 0.36 7.9E-06 50.9 8.5 90 73-188 317-408 (808)
41 COG3934 Endo-beta-mannanase [C 90.3 0.13 2.9E-06 50.7 1.4 109 79-189 28-150 (587)
42 PF03198 Glyco_hydro_72: Gluca 89.9 1.8 4E-05 40.7 8.5 90 78-187 54-145 (314)
43 COG3867 Arabinogalactan endo-1 89.8 11 0.00025 35.5 13.5 174 23-247 34-223 (403)
44 smart00642 Aamy Alpha-amylase 89.8 0.8 1.7E-05 39.0 5.7 64 76-139 18-91 (166)
45 KOG2233 Alpha-N-acetylglucosam 89.0 3.4 7.4E-05 41.2 9.9 137 76-235 77-274 (666)
46 COG3664 XynB Beta-xylosidase [ 88.2 1 2.2E-05 43.8 5.7 100 85-190 13-117 (428)
47 PF07488 Glyco_hydro_67M: Glyc 88.1 11 0.00024 35.6 12.2 156 76-276 56-227 (328)
48 PF00128 Alpha-amylase: Alpha 83.5 1.7 3.7E-05 38.9 4.5 58 80-139 7-73 (316)
49 PRK09058 coproporphyrinogen II 81.7 5 0.00011 39.5 7.4 128 79-223 162-292 (449)
50 COG3534 AbfA Alpha-L-arabinofu 80.5 13 0.00028 36.9 9.4 88 79-188 50-175 (501)
51 PF02638 DUF187: Glycosyl hydr 80.3 8.6 0.00019 36.0 8.1 99 77-175 19-154 (311)
52 cd06592 GH31_glucosidase_KIAA1 80.0 10 0.00023 35.2 8.5 105 80-188 33-167 (303)
53 PLN02361 alpha-amylase 79.7 3.3 7.2E-05 40.3 5.2 67 74-140 26-100 (401)
54 PF14871 GHL6: Hypothetical gl 79.6 6.4 0.00014 32.3 6.2 55 81-139 4-65 (132)
55 PLN00196 alpha-amylase; Provis 79.5 2.9 6.2E-05 41.1 4.8 64 75-138 42-112 (428)
56 TIGR03581 EF_0839 conserved hy 79.4 6.6 0.00014 35.2 6.5 78 73-163 131-230 (236)
57 PRK05799 coproporphyrinogen II 79.2 4.6 9.9E-05 38.5 6.0 123 79-222 98-226 (374)
58 PF05089 NAGLU: Alpha-N-acetyl 76.8 9 0.00019 36.5 7.0 110 76-188 18-185 (333)
59 cd07945 DRE_TIM_CMS Leptospira 76.6 7.6 0.00016 35.9 6.4 66 78-144 75-141 (280)
60 PRK12313 glycogen branching en 75.1 14 0.0003 38.1 8.5 92 77-175 170-302 (633)
61 PF10566 Glyco_hydro_97: Glyco 74.0 16 0.00034 33.9 7.8 102 72-173 27-149 (273)
62 COG1523 PulA Type II secretory 73.9 6.3 0.00014 41.2 5.6 57 83-139 206-286 (697)
63 PF12876 Cellulase-like: Sugar 73.9 1.7 3.8E-05 32.8 1.2 19 170-188 1-22 (88)
64 TIGR01210 conserved hypothetic 72.9 21 0.00045 33.5 8.4 108 80-202 117-229 (313)
65 cd06543 GH18_PF-ChiA-like PF-C 71.6 18 0.00039 33.7 7.6 84 84-175 19-104 (294)
66 PRK05402 glycogen branching en 71.3 27 0.00059 36.6 9.7 89 80-175 268-397 (726)
67 PLN02746 hydroxymethylglutaryl 70.9 14 0.0003 35.4 6.9 60 79-139 123-183 (347)
68 cd07948 DRE_TIM_HCS Saccharomy 70.1 8.3 0.00018 35.2 5.0 59 80-139 74-133 (262)
69 cd07939 DRE_TIM_NifV Streptomy 70.0 16 0.00035 33.0 6.8 60 79-139 71-131 (259)
70 PRK09441 cytoplasmic alpha-amy 70.0 7.9 0.00017 38.3 5.2 64 74-138 19-101 (479)
71 TIGR02403 trehalose_treC alpha 69.5 9.3 0.0002 38.6 5.7 63 75-139 25-96 (543)
72 cd02803 OYE_like_FMN_family Ol 69.4 20 0.00044 33.2 7.6 136 102-253 62-222 (327)
73 cd03174 DRE_TIM_metallolyase D 69.2 16 0.00035 32.5 6.6 60 80-140 77-137 (265)
74 PRK07379 coproporphyrinogen II 68.8 24 0.00051 34.2 8.1 125 79-222 114-242 (400)
75 PF12891 Glyco_hydro_44: Glyco 68.3 15 0.00033 33.3 6.2 113 118-248 24-182 (239)
76 PRK05692 hydroxymethylglutaryl 67.6 21 0.00046 33.0 7.2 61 78-139 80-141 (287)
77 TIGR02402 trehalose_TreZ malto 67.3 8.9 0.00019 38.8 5.0 92 76-175 110-237 (542)
78 PLN02784 alpha-amylase 67.3 10 0.00022 40.6 5.5 67 74-140 518-592 (894)
79 PRK10785 maltodextrin glucosid 66.3 13 0.00027 38.1 5.9 59 79-139 181-247 (598)
80 PRK03705 glycogen debranching 65.8 13 0.00027 38.7 5.8 91 83-175 185-329 (658)
81 PRK12858 tagatose 1,6-diphosph 64.5 28 0.0006 33.3 7.4 53 83-139 112-164 (340)
82 PRK10933 trehalose-6-phosphate 63.8 12 0.00025 38.0 5.1 63 75-139 31-102 (551)
83 COG3589 Uncharacterized conser 63.5 29 0.00063 33.2 7.2 71 81-166 20-90 (360)
84 TIGR01515 branching_enzym alph 63.4 57 0.0012 33.5 10.0 95 80-175 159-288 (613)
85 PRK09505 malS alpha-amylase; R 63.4 15 0.00033 38.3 5.9 61 79-139 232-313 (683)
86 PRK06294 coproporphyrinogen II 63.3 34 0.00073 32.7 7.9 94 79-190 102-199 (370)
87 PRK09936 hypothetical protein; 63.1 60 0.0013 30.5 9.1 62 79-149 40-101 (296)
88 cd06600 GH31_MGAM-like This fa 62.9 1.1E+02 0.0024 28.6 11.1 103 83-189 30-163 (317)
89 PRK12399 tagatose 1,6-diphosph 62.3 44 0.00096 31.7 8.2 58 83-144 111-168 (324)
90 TIGR00433 bioB biotin syntheta 62.2 22 0.00047 32.4 6.2 56 79-138 122-178 (296)
91 PRK04161 tagatose 1,6-diphosph 61.6 46 0.001 31.7 8.2 59 82-144 112-170 (329)
92 TIGR00612 ispG_gcpE 1-hydroxy- 60.7 35 0.00075 32.6 7.2 85 71-170 76-160 (346)
93 TIGR02090 LEU1_arch isopropylm 59.6 14 0.00031 35.3 4.6 106 78-189 72-197 (363)
94 TIGR02456 treS_nterm trehalose 59.5 26 0.00056 35.3 6.6 61 76-138 27-96 (539)
95 PRK05628 coproporphyrinogen II 59.4 51 0.0011 31.4 8.4 105 79-201 107-215 (375)
96 cd06593 GH31_xylosidase_YicI Y 59.4 58 0.0013 30.0 8.6 106 79-188 26-161 (308)
97 PRK11858 aksA trans-homoaconit 59.3 33 0.00073 33.0 7.1 105 80-189 78-201 (378)
98 cd07938 DRE_TIM_HMGL 3-hydroxy 59.0 40 0.00087 30.9 7.3 65 79-144 75-141 (274)
99 TIGR02660 nifV_homocitr homoci 58.6 31 0.00068 32.9 6.8 106 79-189 74-198 (365)
100 PRK14041 oxaloacetate decarbox 58.2 36 0.00078 33.9 7.3 52 75-140 88-144 (467)
101 cd07944 DRE_TIM_HOA_like 4-hyd 57.9 37 0.0008 31.0 6.9 47 80-140 85-131 (266)
102 PRK08599 coproporphyrinogen II 57.8 50 0.0011 31.4 8.0 95 79-191 99-197 (377)
103 cd06598 GH31_transferase_CtsZ 57.5 76 0.0017 29.6 9.1 107 81-190 28-168 (317)
104 PRK14705 glycogen branching en 57.4 75 0.0016 35.6 10.1 91 83-175 772-897 (1224)
105 PF07071 DUF1341: Protein of u 56.8 15 0.00032 32.7 3.8 54 76-135 134-206 (218)
106 PLN02447 1,4-alpha-glucan-bran 56.7 20 0.00044 37.8 5.4 94 82-175 256-383 (758)
107 cd02742 GH20_hexosaminidase Be 56.5 31 0.00066 32.0 6.2 63 78-147 17-98 (303)
108 cd07937 DRE_TIM_PC_TC_5S Pyruv 56.4 59 0.0013 29.8 8.0 46 79-138 93-138 (275)
109 PRK14510 putative bifunctional 56.2 18 0.00039 40.3 5.2 63 76-138 184-267 (1221)
110 PRK00366 ispG 4-hydroxy-3-meth 55.7 63 0.0014 31.1 8.1 73 86-170 97-169 (360)
111 cd06603 GH31_GANC_GANAB_alpha 55.2 61 0.0013 30.5 8.1 72 120-191 66-167 (339)
112 TIGR03471 HpnJ hopanoid biosyn 55.1 45 0.00098 32.8 7.4 76 80-169 287-364 (472)
113 cd06604 GH31_glucosidase_II_Ma 54.8 66 0.0014 30.3 8.2 68 120-190 66-163 (339)
114 cd06601 GH31_lyase_GLase GLase 54.7 48 0.001 31.4 7.2 72 120-193 66-140 (332)
115 cd06602 GH31_MGAM_SI_GAA This 53.9 50 0.0011 31.2 7.2 68 121-189 69-168 (339)
116 cd04733 OYE_like_2_FMN Old yel 53.7 90 0.0019 29.3 8.9 137 101-253 63-230 (338)
117 TIGR02401 trehalose_TreY malto 53.7 26 0.00056 37.4 5.7 66 77-142 16-91 (825)
118 cd06568 GH20_SpHex_like A subg 53.6 41 0.0009 31.7 6.6 71 70-147 9-101 (329)
119 PRK14511 maltooligosyl trehalo 53.2 24 0.00053 37.9 5.4 55 77-138 20-89 (879)
120 cd02932 OYE_YqiM_FMN Old yello 53.2 1.1E+02 0.0024 28.7 9.4 39 102-141 62-100 (336)
121 PRK14040 oxaloacetate decarbox 53.1 49 0.0011 34.0 7.4 27 75-101 90-121 (593)
122 PRK12581 oxaloacetate decarbox 52.9 49 0.0011 33.0 7.2 57 74-144 97-158 (468)
123 TIGR03234 OH-pyruv-isom hydrox 52.6 36 0.00078 30.1 5.8 66 76-144 83-150 (254)
124 TIGR00539 hemN_rel putative ox 52.4 35 0.00077 32.3 6.0 93 79-189 99-195 (360)
125 COG0821 gcpE 1-hydroxy-2-methy 52.3 52 0.0011 31.5 6.9 73 85-170 90-162 (361)
126 PRK08446 coproporphyrinogen II 52.2 55 0.0012 31.0 7.3 93 80-189 98-193 (350)
127 TIGR01211 ELP3 histone acetylt 51.8 51 0.0011 33.4 7.2 105 80-201 206-315 (522)
128 TIGR02100 glgX_debranch glycog 51.6 35 0.00075 35.7 6.2 56 83-139 190-266 (688)
129 PRK12568 glycogen branching en 50.6 30 0.00065 36.5 5.5 95 79-175 271-401 (730)
130 cd06591 GH31_xylosidase_XylS X 50.1 1.1E+02 0.0024 28.5 8.9 79 112-191 60-164 (319)
131 KOG1065 Maltase glucoamylase a 49.3 76 0.0016 33.8 8.1 104 82-192 316-454 (805)
132 COG0366 AmyA Glycosidases [Car 49.2 28 0.0006 33.8 4.8 59 81-140 33-101 (505)
133 cd07941 DRE_TIM_LeuA3 Desulfob 48.4 75 0.0016 29.0 7.3 61 80-141 81-142 (273)
134 PRK13523 NADPH dehydrogenase N 47.7 1.2E+02 0.0027 28.7 8.8 126 111-253 74-221 (337)
135 PF10566 Glyco_hydro_97: Glyco 47.7 34 0.00073 31.7 4.9 69 79-159 108-176 (273)
136 PF03659 Glyco_hydro_71: Glyco 47.5 1.1E+02 0.0024 29.7 8.6 51 77-138 17-67 (386)
137 PRK14507 putative bifunctional 47.3 52 0.0011 38.0 7.0 66 77-142 758-833 (1693)
138 cd06565 GH20_GcnA-like Glycosy 47.1 61 0.0013 30.1 6.6 62 79-148 19-87 (301)
139 cd02930 DCR_FMN 2,4-dienoyl-Co 47.1 1.5E+02 0.0033 28.0 9.4 132 103-249 63-214 (353)
140 TIGR02104 pulA_typeI pullulana 46.8 38 0.00082 34.7 5.6 94 82-175 169-312 (605)
141 TIGR01232 lacD tagatose 1,6-di 46.4 1.2E+02 0.0026 28.9 8.3 60 82-145 111-170 (325)
142 PRK12331 oxaloacetate decarbox 45.9 77 0.0017 31.4 7.4 92 80-189 99-210 (448)
143 cd06542 GH18_EndoS-like Endo-b 45.7 69 0.0015 28.5 6.5 55 117-175 50-104 (255)
144 PLN02960 alpha-amylase 45.5 37 0.00081 36.5 5.3 94 75-175 414-549 (897)
145 PRK01060 endonuclease IV; Prov 44.9 1.4E+02 0.003 26.7 8.5 51 79-135 14-64 (281)
146 COG1501 Alpha-glucosidases, fa 44.7 78 0.0017 33.7 7.5 101 89-193 294-422 (772)
147 PF01055 Glyco_hydro_31: Glyco 44.5 1.1E+02 0.0024 29.6 8.2 108 79-190 45-184 (441)
148 TIGR02629 L_rham_iso_rhiz L-rh 43.6 93 0.002 30.6 7.3 88 80-182 73-171 (412)
149 cd06545 GH18_3CO4_chitinase Th 42.8 74 0.0016 28.4 6.3 46 97-144 27-72 (253)
150 cd07943 DRE_TIM_HOA 4-hydroxy- 42.6 1.7E+02 0.0037 26.3 8.7 92 80-189 88-198 (263)
151 TIGR01212 radical SAM protein, 41.9 63 0.0014 30.0 5.8 73 117-202 162-234 (302)
152 PRK12677 xylose isomerase; Pro 41.7 2.3E+02 0.0051 27.3 9.9 90 79-176 33-128 (384)
153 cd00019 AP2Ec AP endonuclease 41.2 1.5E+02 0.0032 26.6 8.0 54 77-136 10-64 (279)
154 PLN02925 4-hydroxy-3-methylbut 41.0 84 0.0018 33.0 6.9 50 120-170 212-261 (733)
155 TIGR03217 4OH_2_O_val_ald 4-hy 40.9 2.1E+02 0.0046 27.1 9.2 94 79-189 89-201 (333)
156 smart00729 Elp3 Elongator prot 40.5 1.9E+02 0.0041 23.7 8.1 58 77-138 97-157 (216)
157 COG3280 TreY Maltooligosyl tre 40.1 58 0.0012 34.5 5.5 65 80-148 22-94 (889)
158 PF00682 HMGL-like: HMGL-like 40.1 87 0.0019 27.5 6.2 60 80-140 66-130 (237)
159 cd06562 GH20_HexA_HexB-like Be 39.8 69 0.0015 30.4 5.8 71 70-147 9-96 (348)
160 cd06599 GH31_glycosidase_Aec37 39.8 2.4E+02 0.0052 26.3 9.4 109 80-189 32-171 (317)
161 cd06570 GH20_chitobiase-like_1 39.2 93 0.002 29.2 6.5 62 78-146 19-93 (311)
162 PF04646 DUF604: Protein of un 38.8 20 0.00043 32.9 1.8 73 126-201 76-148 (255)
163 PLN02389 biotin synthase 38.7 91 0.002 30.2 6.5 58 78-139 176-234 (379)
164 COG1902 NemA NADH:flavin oxido 38.6 2.6E+02 0.0057 26.9 9.6 137 100-251 66-228 (363)
165 TIGR01108 oadA oxaloacetate de 38.4 1.1E+02 0.0024 31.3 7.4 92 80-189 94-205 (582)
166 TIGR00587 nfo apurinic endonuc 38.2 1.1E+02 0.0024 27.7 6.7 56 79-140 13-68 (274)
167 cd07940 DRE_TIM_IPMS 2-isoprop 38.2 1.3E+02 0.0028 27.3 7.1 59 80-139 72-135 (268)
168 PF04914 DltD_C: DltD C-termin 38.0 1E+02 0.0022 25.3 5.7 58 116-177 34-91 (130)
169 PRK05660 HemN family oxidoredu 37.9 1.4E+02 0.0031 28.5 7.7 94 79-189 106-202 (378)
170 PF03511 Fanconi_A: Fanconi an 37.7 25 0.00055 25.2 1.9 39 101-142 19-57 (64)
171 cd02874 GH18_CFLE_spore_hydrol 37.0 1.2E+02 0.0026 27.9 6.8 87 83-175 16-134 (313)
172 PRK14706 glycogen branching en 37.0 69 0.0015 33.2 5.7 91 83-175 174-299 (639)
173 PRK07094 biotin synthase; Prov 36.4 68 0.0015 29.7 5.1 57 78-138 127-185 (323)
174 TIGR00538 hemN oxygen-independ 36.2 66 0.0014 31.6 5.2 61 79-144 150-213 (455)
175 COG2100 Predicted Fe-S oxidore 35.7 1.3E+02 0.0029 28.9 6.8 84 73-171 197-284 (414)
176 cd06564 GH20_DspB_LnbB-like Gl 35.5 3.6E+02 0.0079 25.1 9.9 62 79-147 19-108 (326)
177 PRK09856 fructoselysine 3-epim 35.5 46 0.00099 29.8 3.7 60 76-137 89-148 (275)
178 PRK08255 salicylyl-CoA 5-hydro 35.3 2.5E+02 0.0054 29.6 9.6 153 84-252 438-631 (765)
179 cd07947 DRE_TIM_Re_CS Clostrid 35.0 64 0.0014 29.8 4.6 60 78-138 75-135 (279)
180 PTZ00445 p36-lilke protein; Pr 34.5 73 0.0016 28.6 4.7 57 82-139 34-99 (219)
181 PF01261 AP_endonuc_2: Xylose 34.3 40 0.00087 28.1 3.0 62 76-137 70-131 (213)
182 TIGR00542 hxl6Piso_put hexulos 33.4 64 0.0014 29.1 4.3 61 76-138 93-153 (279)
183 cd06563 GH20_chitobiase-like T 33.3 1E+02 0.0023 29.2 5.9 71 70-147 9-112 (357)
184 PF02057 Glyco_hydro_59: Glyco 33.1 1E+02 0.0022 32.2 6.1 64 122-188 116-184 (669)
185 COG1453 Predicted oxidoreducta 33.0 1.2E+02 0.0026 29.5 6.1 89 85-185 12-118 (391)
186 TIGR02026 BchE magnesium-proto 32.9 1.7E+02 0.0037 29.1 7.6 61 79-144 286-348 (497)
187 PRK13398 3-deoxy-7-phosphohept 32.7 1.3E+02 0.0028 27.6 6.3 72 74-149 38-109 (266)
188 TIGR02102 pullulan_Gpos pullul 32.5 88 0.0019 34.7 5.8 59 117-175 554-635 (1111)
189 cd02933 OYE_like_FMN Old yello 32.5 3.6E+02 0.0078 25.4 9.4 134 102-251 62-230 (338)
190 PRK13347 coproporphyrinogen II 32.3 84 0.0018 30.9 5.3 60 79-144 151-214 (453)
191 PRK06582 coproporphyrinogen II 32.2 2.1E+02 0.0046 27.6 7.9 94 80-190 111-206 (390)
192 cd06525 GH25_Lyc-like Lyc mura 31.3 3.2E+02 0.0069 23.0 9.0 50 82-144 13-62 (184)
193 cd06595 GH31_xylosidase_XylS-l 31.2 1.6E+02 0.0034 27.1 6.6 108 81-190 29-163 (292)
194 PF13812 PPR_3: Pentatricopept 31.1 39 0.00085 19.5 1.8 16 119-134 19-34 (34)
195 PF04055 Radical_SAM: Radical 30.8 1.4E+02 0.0031 23.2 5.6 53 80-136 90-145 (166)
196 cd08576 GDPD_like_SMaseD_PLD G 30.7 4E+02 0.0086 24.6 9.0 104 80-189 10-126 (265)
197 PRK08207 coproporphyrinogen II 30.4 1.2E+02 0.0025 30.5 5.9 60 80-144 269-331 (488)
198 PRK08195 4-hyroxy-2-oxovalerat 30.4 98 0.0021 29.4 5.2 93 80-189 91-202 (337)
199 TIGR03551 F420_cofH 7,8-dideme 30.3 2E+02 0.0043 27.1 7.2 90 79-185 140-234 (343)
200 cd04734 OYE_like_3_FMN Old yel 30.3 3.7E+02 0.0079 25.4 9.1 133 103-251 63-220 (343)
201 TIGR01856 hisJ_fam histidinol 29.8 1.6E+02 0.0034 26.4 6.3 61 118-180 15-78 (253)
202 PRK13210 putative L-xylulose 5 29.8 74 0.0016 28.4 4.1 59 77-138 94-153 (284)
203 cd07938 DRE_TIM_HMGL 3-hydroxy 29.4 4.4E+02 0.0096 24.0 12.5 93 77-189 114-206 (274)
204 PRK09249 coproporphyrinogen II 29.1 1.9E+02 0.0041 28.4 7.1 61 79-144 150-213 (453)
205 PRK06256 biotin synthase; Vali 28.8 1E+02 0.0022 28.8 4.9 57 78-138 150-207 (336)
206 PF04028 DUF374: Domain of unk 28.6 2.1E+02 0.0045 21.1 5.6 40 84-138 27-66 (74)
207 PRK09997 hydroxypyruvate isome 28.4 1.8E+02 0.0038 25.8 6.3 63 79-144 87-151 (258)
208 PRK09057 coproporphyrinogen II 28.4 2.8E+02 0.0061 26.5 8.0 126 79-223 103-231 (380)
209 PLN02411 12-oxophytodienoate r 27.9 4.6E+02 0.01 25.3 9.4 124 111-248 80-240 (391)
210 TIGR00423 radical SAM domain p 27.8 4.4E+02 0.0096 24.2 9.0 54 79-139 106-166 (309)
211 PRK00125 pyrF orotidine 5'-pho 27.7 66 0.0014 29.8 3.4 32 114-145 69-100 (278)
212 cd02871 GH18_chitinase_D-like 27.6 1.8E+02 0.0038 27.1 6.3 50 119-175 61-110 (312)
213 cd01335 Radical_SAM Radical SA 27.5 1.1E+02 0.0024 24.7 4.5 59 79-139 87-146 (204)
214 PLN03153 hypothetical protein; 27.3 85 0.0018 31.8 4.3 66 128-202 328-400 (537)
215 PRK05692 hydroxymethylglutaryl 27.2 5E+02 0.011 23.9 12.2 93 77-189 120-212 (287)
216 cd04735 OYE_like_4_FMN Old yel 26.8 4.8E+02 0.01 24.7 9.2 129 111-251 71-227 (353)
217 TIGR02631 xylA_Arthro xylose i 26.5 4.3E+02 0.0094 25.5 8.9 93 77-177 32-130 (382)
218 PF01624 MutS_I: MutS domain I 26.3 60 0.0013 25.4 2.5 59 74-138 25-84 (113)
219 PRK11572 copper homeostasis pr 26.0 2.3E+02 0.0049 26.0 6.5 42 76-127 72-113 (248)
220 PF13200 DUF4015: Putative gly 25.7 2.1E+02 0.0045 27.1 6.4 95 77-173 13-136 (316)
221 PRK08208 coproporphyrinogen II 25.3 2.7E+02 0.0059 27.1 7.4 61 79-144 140-203 (430)
222 PRK07106 5-aminoimidazole-4-ca 25.2 89 0.0019 30.4 3.9 52 69-137 332-383 (390)
223 PRK09282 pyruvate carboxylase 25.1 2.6E+02 0.0057 28.8 7.5 93 79-189 98-210 (592)
224 cd02929 TMADH_HD_FMN Trimethyl 25.0 4.1E+02 0.0088 25.4 8.4 130 109-253 75-231 (370)
225 PRK05904 coproporphyrinogen II 24.7 4.2E+02 0.0092 25.1 8.4 92 80-189 103-198 (353)
226 PRK13537 nodulation ABC transp 24.7 1E+02 0.0022 28.5 4.1 31 111-141 168-198 (306)
227 PRK00881 purH bifunctional pho 24.5 1.2E+02 0.0026 30.7 4.7 50 71-137 457-506 (513)
228 cd06522 GH25_AtlA-like AtlA is 24.5 1.8E+02 0.004 24.9 5.4 49 81-144 16-66 (192)
229 PRK09389 (R)-citramalate synth 24.4 1.2E+02 0.0026 30.3 4.8 106 79-189 75-199 (488)
230 PRK13209 L-xylulose 5-phosphat 24.3 5.1E+02 0.011 23.0 9.7 54 78-136 22-75 (283)
231 cd00311 TIM Triosephosphate is 23.9 1.9E+02 0.0041 26.2 5.6 48 83-138 77-124 (242)
232 TIGR01166 cbiO cobalt transpor 23.7 1.3E+02 0.0029 25.2 4.4 31 111-141 157-187 (190)
233 PRK10605 N-ethylmaleimide redu 23.6 6.5E+02 0.014 24.0 9.9 125 111-249 72-235 (362)
234 COG0138 PurH AICAR transformyl 23.5 1.1E+02 0.0023 30.9 4.1 52 69-137 457-508 (515)
235 TIGR02630 xylose_isom_A xylose 23.5 7.4E+02 0.016 24.6 12.8 127 83-233 84-220 (434)
236 PRK13505 formate--tetrahydrofo 23.5 1.9E+02 0.0041 29.6 5.9 31 114-144 355-385 (557)
237 TIGR00542 hxl6Piso_put hexulos 23.4 5.3E+02 0.012 23.0 9.2 55 77-136 16-70 (279)
238 cd06569 GH20_Sm-chitobiase-lik 23.2 2.4E+02 0.0051 27.9 6.6 71 70-147 13-123 (445)
239 PRK02048 4-hydroxy-3-methylbut 23.2 2.3E+02 0.005 29.3 6.5 52 118-170 141-192 (611)
240 PRK00694 4-hydroxy-3-methylbut 23.1 2.3E+02 0.005 29.2 6.4 53 118-171 145-197 (606)
241 TIGR02635 RhaI_grampos L-rhamn 23.0 4.1E+02 0.0088 25.8 8.0 86 80-181 43-136 (378)
242 PF05913 DUF871: Bacterial pro 22.8 1.2E+02 0.0026 29.1 4.3 52 80-139 17-68 (357)
243 TIGR02455 TreS_stutzeri trehal 22.6 1.9E+02 0.0041 30.3 5.8 57 82-139 79-151 (688)
244 TIGR02159 PA_CoA_Oxy4 phenylac 22.4 1.1E+02 0.0023 25.7 3.4 55 71-135 36-91 (146)
245 COG3623 SgaU Putative L-xylulo 21.7 1.4E+02 0.0031 27.4 4.2 49 79-134 20-70 (287)
246 COG3916 LasI N-acyl-L-homoseri 21.7 1.4E+02 0.003 26.7 4.1 64 76-140 76-146 (209)
247 PRK09856 fructoselysine 3-epim 21.7 3.9E+02 0.0084 23.7 7.2 52 78-136 14-65 (275)
248 PRK13516 gamma-glutamyl:cystei 21.5 40 0.00086 32.5 0.7 84 87-175 174-265 (373)
249 COG2876 AroA 3-deoxy-D-arabino 21.4 4.2E+02 0.0091 24.7 7.2 80 71-170 53-132 (286)
250 PRK13209 L-xylulose 5-phosphat 21.4 1.2E+02 0.0025 27.2 3.8 57 76-138 98-158 (283)
251 cd04747 OYE_like_5_FMN Old yel 21.3 7.3E+02 0.016 23.7 9.5 126 111-248 71-220 (361)
252 smart00518 AP2Ec AP endonuclea 21.1 5.6E+02 0.012 22.6 8.2 21 115-135 81-101 (273)
253 cd00927 Cyt_c_Oxidase_VIc Cyto 21.1 41 0.00089 24.8 0.6 19 73-91 46-66 (70)
254 TIGR02495 NrdG2 anaerobic ribo 21.0 2.1E+02 0.0046 23.9 5.1 57 80-138 102-160 (191)
255 COG5520 O-Glycosyl hydrolase [ 20.9 4.1E+02 0.0089 26.0 7.3 94 88-190 77-181 (433)
256 PRK12822 phospho-2-dehydro-3-d 20.9 2E+02 0.0043 27.8 5.2 69 80-149 70-155 (356)
257 PTZ00445 p36-lilke protein; Pr 20.8 1.3E+02 0.0028 27.0 3.8 65 118-188 29-103 (219)
258 PF11790 Glyco_hydro_cc: Glyco 20.6 81 0.0018 28.2 2.5 24 165-189 54-77 (239)
259 PRK10658 putative alpha-glucos 20.5 5.7E+02 0.012 26.7 9.0 102 83-188 289-420 (665)
260 PF04551 GcpE: GcpE protein; 20.3 1.7E+02 0.0036 28.3 4.6 51 118-169 118-168 (359)
261 TIGR02127 pyrF_sub2 orotidine 20.1 1.3E+02 0.0027 27.6 3.7 56 84-145 45-100 (261)
262 TIGR03699 mena_SCO4550 menaqui 20.0 3.9E+02 0.0083 24.9 7.1 53 79-138 142-201 (340)
263 PRK09261 phospho-2-dehydro-3-d 20.0 2E+02 0.0044 27.7 5.1 54 95-149 99-155 (349)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-81 Score=605.85 Aligned_cols=256 Identities=58% Similarity=1.058 Sum_probs=243.2
Q ss_pred CCCCCCCCCCceeeeeccccccccccCCCCCCCceeeeecc-cCCccccCCCCCccCCcccCcHHHHHHHHHcCCCeeee
Q 023712 18 NVSKTDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTH-TEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRF 96 (278)
Q Consensus 18 ~~~~~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wD~~~~-~~~~~~~~~~~~~a~d~y~~y~eDi~l~k~lG~~~~R~ 96 (278)
.+.+..||++|+||+||||||+|||++++||++|+||+|++ .++++.+..++|+|||+||+|+|||+|||+||+++|||
T Consensus 31 ~~~r~~FP~~F~FGtAtSAyQ~EGA~~e~gRg~svWD~f~~~~p~~~~~~~ngdva~D~Yh~ykeDv~Lmk~lgv~afRF 110 (524)
T KOG0626|consen 31 KFSRADFPKGFLFGTATSAYQVEGAANEDGRGPSVWDTFTHKYPGKICDGSNGDVAVDFYHRYKEDVKLMKELGVDAFRF 110 (524)
T ss_pred cccccCCCCCceeeccchHHHhhhhhccCCCCCchhhhhhccCCcccccCCCCCeechhhhhhHHHHHHHHHcCCCeEEE
Confidence 44578999999999999999999999999999999999998 45577777889999999999999999999999999999
Q ss_pred cccccccccCCC--CCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhCCCCChHHHHHHHHHHHHHHHHh
Q 023712 97 SISWSRIFPDGL--GTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASF 174 (278)
Q Consensus 97 si~WsRi~P~~~--G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v~~~~ 174 (278)
|||||||+|.|+ + .+|++|++||+++|++|+++||+|+|||+|||+|++|+++||||+|++++++|.+||+.||++|
T Consensus 111 SIsWSRIlP~G~~~~-gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDlPq~LeDeYgGwLn~~ivedF~~yA~~CF~~f 189 (524)
T KOG0626|consen 111 SISWSRILPNGRLTG-GVNEAGIQFYNNLIDELLANGIEPFVTLFHWDLPQALEDEYGGWLNPEIVEDFRDYADLCFQEF 189 (524)
T ss_pred EeehHhhCCCCCcCC-CcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCCHHHHHHhccccCHHHHHHHHHHHHHHHHHh
Confidence 999999999997 5 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEecCcccccccCccccccCCCCC---------CCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEce
Q 023712 175 GDRVKNWITINEPLQTAVNGYCTGIFAPGRH---------QHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLV 245 (278)
Q Consensus 175 gd~V~~w~t~NEP~~~~~~gy~~g~~~P~~~---------~~~~~~~~~~~h~~l~AHa~a~~~~r~~~~~~~~~~iGi~ 245 (278)
||+|+.|+|+|||++++..||..|..|||+. +++.++.|.|+||||+|||+||++||+.++..|+|+|||+
T Consensus 190 GDrVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~ 269 (524)
T KOG0626|consen 190 GDRVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYVGNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIA 269 (524)
T ss_pred cccceeeEEecccceeeeehhccCCCCCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEE
Confidence 9999999999999999999999999999973 5678999999999999999999999999888899999999
Q ss_pred ecCceeeeCCCCc--ccchhhHhhHHhhccccc
Q 023712 246 VDCEWAEARSSVR--RQHPNGFMLFHGAFGRFL 276 (278)
Q Consensus 246 ~~~~~~~p~~~~~--~d~~~~~~~f~~~~g~~~ 276 (278)
++..|++|.++++ .++++|+++|. +|||+
T Consensus 270 ~~~~w~eP~~~s~~D~~Aa~Ra~~F~--~gw~l 300 (524)
T KOG0626|consen 270 LSARWFEPYDDSKEDKEAAERALDFF--LGWFL 300 (524)
T ss_pred EeeeeeccCCCChHHHHHHHHHHHhh--hhhhh
Confidence 9999999999764 48999999999 99997
No 2
>PLN02998 beta-glucosidase
Probab=100.00 E-value=8.5e-78 Score=589.06 Aligned_cols=249 Identities=51% Similarity=0.897 Sum_probs=226.7
Q ss_pred CCCCCCCCCCceeeeeccccccccccCCCCCCCceeeeecccCCccccCCCCCccCCcccCcHHHHHHHHHcCCCeeeec
Q 023712 18 NVSKTDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFS 97 (278)
Q Consensus 18 ~~~~~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wD~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~k~lG~~~~R~s 97 (278)
.+.+.+||++|+||+||||||+||+++++|||+|+||.+.+ ++. .+..++++||||||||+|||+|||+||+++||||
T Consensus 25 ~~~~~~FP~~FlwG~AtSA~QvEGa~~~~Gkg~siwD~~~~-~~~-~~~~~~~~a~D~Yhry~EDi~lmk~lG~~~YRfS 102 (497)
T PLN02998 25 KYSRNDFPPGFVFGSGTSAYQVEGAADEDGRTPSIWDVFAH-AGH-SGVAAGNVACDQYHKYKEDVKLMADMGLEAYRFS 102 (497)
T ss_pred cCccccCCCCCEEeeechHHHhCCCcCCCCCccchhhcccc-cCc-CCCCCCcccccHHHhhHHHHHHHHHcCCCeEEee
Confidence 36677899999999999999999999999999999999987 442 2224788999999999999999999999999999
Q ss_pred ccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhCCCCChHHHHHHHHHHHHHHHHhCCC
Q 023712 98 ISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDR 177 (278)
Q Consensus 98 i~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v~~~~gd~ 177 (278)
|+||||+|+|+| .+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||.|+++++.|++||+.|+++|||+
T Consensus 103 IsWsRI~P~G~g-~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~~yGGW~n~~~v~~F~~YA~~~~~~fgdr 181 (497)
T PLN02998 103 ISWSRLLPSGRG-PINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALEDEYGGWLSQEIVRDFTAYADTCFKEFGDR 181 (497)
T ss_pred ccHHhcCcCCCC-CcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhhCCcCCchHHHHHHHHHHHHHHHhcCc
Confidence 999999999878 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEecCcccccccCccccccCCCCCC----------CCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEceec
Q 023712 178 VKNWITINEPLQTAVNGYCTGIFAPGRHQ----------HSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVD 247 (278)
Q Consensus 178 V~~w~t~NEP~~~~~~gy~~g~~~P~~~~----------~~~~~~~~~~h~~l~AHa~a~~~~r~~~~~~~~~~iGi~~~ 247 (278)
|++|+|+|||++++..||..|.+|||... .+.++.++++||+++|||+||++||+.++..++++|||+++
T Consensus 182 Vk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~~g~IGi~~~ 261 (497)
T PLN02998 182 VSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQQYKYKQHGSVGISVY 261 (497)
T ss_pred CCEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEe
Confidence 99999999999999999999999999521 12345799999999999999999999865457899999999
Q ss_pred CceeeeCCCCcc--cchhhHhhHH
Q 023712 248 CEWAEARSSVRR--QHPNGFMLFH 269 (278)
Q Consensus 248 ~~~~~p~~~~~~--d~~~~~~~f~ 269 (278)
..++||.+++++ +++++.++|.
T Consensus 262 ~~~~~P~~~~~~D~~aa~~~~~~~ 285 (497)
T PLN02998 262 TYGAVPLTNSVKDKQATARVNDFY 285 (497)
T ss_pred CCeeecCCCCHHHHHHHHHHHHHH
Confidence 999999988775 5667777665
No 3
>PLN02849 beta-glucosidase
Probab=100.00 E-value=3e-77 Score=585.91 Aligned_cols=249 Identities=48% Similarity=0.882 Sum_probs=227.8
Q ss_pred cCCCCCCCCCCCceeeeeccccccccccCCCCCCCceeeeecccCCccccCCCCCccCCcccCcHHHHHHHHHcCCCeee
Q 023712 16 PRNVSKTDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYR 95 (278)
Q Consensus 16 ~~~~~~~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wD~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~k~lG~~~~R 95 (278)
...+.+.+||++|+||+||||||+||+++++||++|+||++.+.++ +.++++||||||||+|||+|||+||+++||
T Consensus 22 ~~~~~~~~FP~dFlwG~AtsA~QiEGa~~~~Gkg~SiwD~~~~~~~----~~~~~~a~D~YhrY~eDI~Lm~~lG~~aYR 97 (503)
T PLN02849 22 SSDYSRSDFPEGFVFGAGTSAYQWEGAFDEDGRKPSVWDTFLHSRN----MSNGDIACDGYHKYKEDVKLMVETGLDAFR 97 (503)
T ss_pred cCCCccccCCCCCEEEeechhhhhcCCcCCCCCcCcceeeeeccCC----CCCCCccccHHHhHHHHHHHHHHcCCCeEE
Confidence 4456778899999999999999999999999999999999987542 357889999999999999999999999999
Q ss_pred ecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhCCCCChHHHHHHHHHHHHHHHHhC
Q 023712 96 FSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFG 175 (278)
Q Consensus 96 ~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v~~~~g 175 (278)
|||+|+||+|++.| .+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||.|+++++.|++||+.|+++||
T Consensus 98 fSIsWsRI~P~G~g-~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~nr~~v~~F~~YA~~~f~~fg 176 (503)
T PLN02849 98 FSISWSRLIPNGRG-SVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLEDDYGGWINRRIIKDFTAYADVCFREFG 176 (503)
T ss_pred EeccHHhcCcCCCC-CCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHHHhcCCcCCchHHHHHHHHHHHHHHHhc
Confidence 99999999999878 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEecCcccccccCccccccCCCCCC---------CCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEcee
Q 023712 176 DRVKNWITINEPLQTAVNGYCTGIFAPGRHQ---------HSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVV 246 (278)
Q Consensus 176 d~V~~w~t~NEP~~~~~~gy~~g~~~P~~~~---------~~~~~~~~~~h~~l~AHa~a~~~~r~~~~~~~~~~iGi~~ 246 (278)
|+|++|+|+|||++++..||..|.+|||... ++.++.++++||+++|||+||+++|++++..++++||+++
T Consensus 177 DrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~ 256 (503)
T PLN02849 177 NHVKFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYIVGHNLLLAHASVSRLYKQKYKDMQGGSIGFSL 256 (503)
T ss_pred CcCCEEEEecchhhhhhchhhhccCCCCccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 9999999999999999999999999999632 1124689999999999999999999975444789999999
Q ss_pred cCceeeeCCCCcc--cchhhHhhHH
Q 023712 247 DCEWAEARSSVRR--QHPNGFMLFH 269 (278)
Q Consensus 247 ~~~~~~p~~~~~~--d~~~~~~~f~ 269 (278)
+..++||.+++++ .++++.++|.
T Consensus 257 ~~~~~~P~~~~~~D~~AA~~~~~~~ 281 (503)
T PLN02849 257 FALGFTPSTSSKDDDIATQRAKDFY 281 (503)
T ss_pred ECceeecCCCCHHHHHHHHHHHHHh
Confidence 9999999987765 5677777765
No 4
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.7e-77 Score=570.32 Aligned_cols=243 Identities=42% Similarity=0.783 Sum_probs=225.7
Q ss_pred CCCCCCceeeeeccccccccccCCCCCCCceeeeecc--cCCccccCCCCCccCCcccCcHHHHHHHHHcCCCeeeeccc
Q 023712 22 TDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTH--TEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSIS 99 (278)
Q Consensus 22 ~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wD~~~~--~~~~~~~~~~~~~a~d~y~~y~eDi~l~k~lG~~~~R~si~ 99 (278)
.+||++||||+||||+|+||++++||||+|+||+|.+ .++.+..+..++.|+||||||+|||+|||+||+++|||||+
T Consensus 2 ~~FPkdFlWG~AtAa~Q~EGa~~~dGkg~s~wD~~~~~~~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~ 81 (460)
T COG2723 2 LKFPKDFLWGGATAAFQVEGAWNEDGKGPSDWDVWVHDEIPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIE 81 (460)
T ss_pred CCCCCCCeeecccccccccCCcCCCCCCCeeeeeeeccccCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeee
Confidence 4799999999999999999999999999999999998 46777777899999999999999999999999999999999
Q ss_pred ccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhCCCCChHHHHHHHHHHHHHHHHhCCCcc
Q 023712 100 WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVK 179 (278)
Q Consensus 100 WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v~~~~gd~V~ 179 (278)
||||+|++++..+|++||+||+++||+|+++||+|+|||+|||+|+||+++||||.|+++++.|++||+.||+||||+|+
T Consensus 82 WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk 161 (460)
T COG2723 82 WSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQKPYGGWENRETVDAFARYAATVFERFGDKVK 161 (460)
T ss_pred EEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcce
Confidence 99999998544799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCcccccccCccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEceecCceeeeCCCCcc
Q 023712 180 NWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWAEARSSVRR 259 (278)
Q Consensus 180 ~w~t~NEP~~~~~~gy~~g~~~P~~~~~~~~~~~~~~h~~l~AHa~a~~~~r~~~~~~~~~~iGi~~~~~~~~p~~~~~~ 259 (278)
+|+||||||+++..||+.|.+||+.. +.+.++||+||+++|||+|++++|++.+ +.+|||+++..+.||.+++|+
T Consensus 162 ~W~TFNE~n~~~~~~y~~~~~~p~~~--~~~~~~qa~hh~~lA~A~avk~~~~~~~---~~kIG~~~~~~p~YP~s~~p~ 236 (460)
T COG2723 162 YWFTFNEPNVVVELGYLYGGHPPGIV--DPKAAYQVAHHMLLAHALAVKAIKKINP---KGKVGIILNLTPAYPLSDKPE 236 (460)
T ss_pred EEEEecchhhhhcccccccccCCCcc--CHHHHHHHHHHHHHHHHHHHHHHHhhCC---cCceEEEeccCcCCCCCCCHH
Confidence 99999999999999999999999975 3678999999999999999999999863 349999999999999999885
Q ss_pred --cchhhHhhHH
Q 023712 260 --QHPNGFMLFH 269 (278)
Q Consensus 260 --d~~~~~~~f~ 269 (278)
.+++....|.
T Consensus 237 dv~aA~~~~~~~ 248 (460)
T COG2723 237 DVKAAENADRFH 248 (460)
T ss_pred HHHHHHHHHHHh
Confidence 3444444444
No 5
>PLN02814 beta-glucosidase
Probab=100.00 E-value=1.4e-76 Score=581.40 Aligned_cols=250 Identities=45% Similarity=0.843 Sum_probs=225.5
Q ss_pred CCCCCCCCCceeeeeccccccccccCCCCCCCceeeeecccCCccccCCCCCccCCcccCcHHHHHHHHHcCCCeeeecc
Q 023712 19 VSKTDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSI 98 (278)
Q Consensus 19 ~~~~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wD~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~k~lG~~~~R~si 98 (278)
|.+.+||++|+||+||||||+||+++++|||+|+||++++. .++.++++||||||||+|||+|||+||+++|||||
T Consensus 23 ~~~~~fP~~FlwG~AtaA~QiEGa~~~~gkg~siwD~~~~~----~~~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRfSI 98 (504)
T PLN02814 23 FTRNDFPEDFLFGAATSAYQWEGAVDEDGRTPSVWDTTSHC----YNGGNGDIASDGYHKYKEDVKLMAEMGLESFRFSI 98 (504)
T ss_pred cccccCCCCCEEeeechhhhhcCCcCCCCCccchhheeeec----cCCCCCCccccHHHhhHHHHHHHHHcCCCEEEEec
Confidence 55678999999999999999999999999999999998862 22458899999999999999999999999999999
Q ss_pred cccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhCCCCChHHHHHHHHHHHHHHHHhCCCc
Q 023712 99 SWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRV 178 (278)
Q Consensus 99 ~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v~~~~gd~V 178 (278)
+||||+|+|+| .+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||.|+++++.|++||+.|+++|||+|
T Consensus 99 sWsRI~P~G~g-~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrV 177 (504)
T PLN02814 99 SWSRLIPNGRG-LINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKIIEDFTAFADVCFREFGEDV 177 (504)
T ss_pred cHhhcCcCCCC-CCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCCcC
Confidence 99999999888 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecCcccccccCccccccCCCCCC----------CCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEceecC
Q 023712 179 KNWITINEPLQTAVNGYCTGIFAPGRHQ----------HSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDC 248 (278)
Q Consensus 179 ~~w~t~NEP~~~~~~gy~~g~~~P~~~~----------~~~~~~~~~~h~~l~AHa~a~~~~r~~~~~~~~~~iGi~~~~ 248 (278)
++|+|+|||++++..||..|.. ||... ++.++.++++||+++|||+||++||+.++..++++||++++.
T Consensus 178 k~WiT~NEP~~~~~~gy~~G~~-pg~~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~ 256 (504)
T PLN02814 178 KLWTTINEATIFAIGSYGQGIR-YGHCSPNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFA 256 (504)
T ss_pred CEEEeccccchhhhcccccCcC-CCCCCcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeC
Confidence 9999999999999999999885 76421 112468999999999999999999998655679999999999
Q ss_pred ceeeeCCCCcc--cchhhHhhHHhhccccc
Q 023712 249 EWAEARSSVRR--QHPNGFMLFHGAFGRFL 276 (278)
Q Consensus 249 ~~~~p~~~~~~--d~~~~~~~f~~~~g~~~ 276 (278)
.++||.+++++ +++++.++|. .|+|+
T Consensus 257 ~~~~P~~~~~~D~~Aa~~~~~~~--~~~f~ 284 (504)
T PLN02814 257 FGLSPYTNSKDDEIATQRAKAFL--YGWML 284 (504)
T ss_pred ceeecCCCCHHHHHHHHHHHHHh--hhhhh
Confidence 99999987775 5667777665 34443
No 6
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=3.8e-76 Score=575.21 Aligned_cols=242 Identities=35% Similarity=0.638 Sum_probs=222.4
Q ss_pred CCCCCCceeeeeccccccccccCCCCCCCceeeeecccCCccccCCCCCccCCcccCcHHHHHHHHHcCCCeeeeccccc
Q 023712 22 TDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSISWS 101 (278)
Q Consensus 22 ~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wD~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~k~lG~~~~R~si~Ws 101 (278)
.+||++|+||+||||||+||++++||||+|+||++.+.++++ ++++||||||||+|||+|||+||+++|||||+||
T Consensus 3 ~~fP~~FlwG~Atsa~QiEG~~~~~Gkg~siwD~~~~~~~~~----~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWs 78 (469)
T PRK13511 3 KTLPKDFIFGGATAAYQAEGATKTDGKGPVAWDKYLEENYWF----TPDPASDFYHRYPEDLKLAEEFGVNGIRISIAWS 78 (469)
T ss_pred CCCCCCCEEEeechHhhhcCCcCCCCCccchhhcccccCCCC----CCCcccchhhhhHHHHHHHHHhCCCEEEeeccHh
Confidence 469999999999999999999999999999999998765543 6889999999999999999999999999999999
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhCCCCChHHHHHHHHHHHHHHHHhCCCcceE
Q 023712 102 RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKNW 181 (278)
Q Consensus 102 Ri~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v~~~~gd~V~~w 181 (278)
||+|+++| .+|++||+||+++|++|+++||+|+|||+|||+|+||+++ |||.|+++++.|++||+.|+++||| |++|
T Consensus 79 RI~P~G~g-~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W 155 (469)
T PRK13511 79 RIFPDGYG-EVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSN-GDWLNRENIDHFVRYAEFCFEEFPE-VKYW 155 (469)
T ss_pred hcCcCCCC-CcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEE
Confidence 99999878 8999999999999999999999999999999999999986 9999999999999999999999999 9999
Q ss_pred EEecCcccccccCccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEceecCceeeeCC-CCcc-
Q 023712 182 ITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWAEARS-SVRR- 259 (278)
Q Consensus 182 ~t~NEP~~~~~~gy~~g~~~P~~~~~~~~~~~~~~h~~l~AHa~a~~~~r~~~~~~~~~~iGi~~~~~~~~p~~-~~~~- 259 (278)
+|||||++++..||..|.+|||... +.+..++++||+++|||+||++||+.. ++++||++++..+++|.+ ++++
T Consensus 156 ~T~NEP~~~~~~gy~~G~~~Pg~~~-~~~~~~~~~hn~llAHa~A~~~~~~~~---~~g~IGi~~~~~~~~P~~~~~~~d 231 (469)
T PRK13511 156 TTFNEIGPIGDGQYLVGKFPPGIKY-DLAKVFQSHHNMMVAHARAVKLFKDKG---YKGEIGVVHALPTKYPIDPDNPED 231 (469)
T ss_pred EEccchhhhhhcchhhcccCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCceEeeCCCCCHHH
Confidence 9999999999999999999999742 234689999999999999999999974 689999999999999998 7765
Q ss_pred -cchhhHhhHHhhccccc
Q 023712 260 -QHPNGFMLFHGAFGRFL 276 (278)
Q Consensus 260 -d~~~~~~~f~~~~g~~~ 276 (278)
+++++..+|. .++|+
T Consensus 232 ~~aa~~~~~~~--~~~f~ 247 (469)
T PRK13511 232 VRAAELEDIIH--NKFIL 247 (469)
T ss_pred HHHHHHHHHHh--hhccc
Confidence 5667777775 34443
No 7
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=2.3e-75 Score=569.12 Aligned_cols=237 Identities=33% Similarity=0.614 Sum_probs=218.1
Q ss_pred CCCCCCceeeeeccccccccccCCCCCCCceeeeecccCCccccCCCCCccCCcccCcHHHHHHHHHcCCCeeeeccccc
Q 023712 22 TDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSISWS 101 (278)
Q Consensus 22 ~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wD~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~k~lG~~~~R~si~Ws 101 (278)
.+||++|+||+||||||+||+++++|||+|+||++.+.++. .++++||||||||+|||+|||+||+++|||||+||
T Consensus 2 ~~fP~~FlwG~AtsA~QvEG~~~~~Gkg~siwD~~~~~~~~----~~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWs 77 (467)
T TIGR01233 2 KTLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLEDNYW----YTAEPASDFYHKYPVDLELAEEYGVNGIRISIAWS 77 (467)
T ss_pred CCCCCCCEEeeechhhhcCCCcCCCCCcCchhhccccCCCC----CCCCccCchhhhHHHHHHHHHHcCCCEEEEecchh
Confidence 36999999999999999999999999999999998865443 36789999999999999999999999999999999
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhCCCCChHHHHHHHHHHHHHHHHhCCCcceE
Q 023712 102 RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKNW 181 (278)
Q Consensus 102 Ri~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v~~~~gd~V~~w 181 (278)
||+|++.| .+|++||+||+++|++|+++||+|+|||+|||+|+||+++ |||.|+++++.|++||+.|+++||+ |++|
T Consensus 78 RI~P~g~~-~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~W 154 (467)
T TIGR01233 78 RIFPTGYG-EVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSN-GDFLNRENIEHFIDYAAFCFEEFPE-VNYW 154 (467)
T ss_pred hccCCCCC-CcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEE
Confidence 99999878 8999999999999999999999999999999999999986 9999999999999999999999998 9999
Q ss_pred EEecCcccccccCccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEceecCceeeeCC-CCcc-
Q 023712 182 ITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWAEARS-SVRR- 259 (278)
Q Consensus 182 ~t~NEP~~~~~~gy~~g~~~P~~~~~~~~~~~~~~h~~l~AHa~a~~~~r~~~~~~~~~~iGi~~~~~~~~p~~-~~~~- 259 (278)
+|||||++++..||+.|.+|||... ..++.++++||+++|||+||+++|++. ++++|||+++..++||.+ ++++
T Consensus 155 iT~NEP~~~~~~gy~~G~~~Pg~~~-~~~~~~~a~hn~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~P~~~~~~~D 230 (467)
T TIGR01233 155 TTFNEIGPIGDGQYLVGKFPPGIKY-DLAKVFQSHHNMMVSHARAVKLYKDKG---YKGEIGVVHALPTKYPYDPENPAD 230 (467)
T ss_pred EEecchhhhhhccchhcccCCCccc-hhHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCceeEECCCCCHHH
Confidence 9999999999999999999999631 234789999999999999999999974 689999999999999997 6665
Q ss_pred -cchhhHhhHH
Q 023712 260 -QHPNGFMLFH 269 (278)
Q Consensus 260 -d~~~~~~~f~ 269 (278)
+++++.++|.
T Consensus 231 ~~aA~~~~~~~ 241 (467)
T TIGR01233 231 VRAAELEDIIH 241 (467)
T ss_pred HHHHHHHHHHh
Confidence 4566766664
No 8
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=1.1e-74 Score=565.58 Aligned_cols=241 Identities=33% Similarity=0.564 Sum_probs=214.4
Q ss_pred CCCCCCCceeeeeccccccccccCCCCCCCceeeeecccCCccc--c----------C--CCCCccCCcccCcHHHHHHH
Q 023712 21 KTDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKII--D----------K--SNGDVAVDHYHRYKEDIDLI 86 (278)
Q Consensus 21 ~~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wD~~~~~~~~~~--~----------~--~~~~~a~d~y~~y~eDi~l~ 86 (278)
..+||++|+||+||||||+||++++||||+|+||+|.+.++++. . + .++++||||||||+|||+||
T Consensus 3 ~~~fP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~Yhry~eDi~Lm 82 (478)
T PRK09593 3 KMPFPKGFLWGGATAANQCEGAYNVDGRGLANVDVVPIGEDRFPIITGEKKMFDFEEGYFYPAKEAIDMYHHYKEDIALF 82 (478)
T ss_pred cccCCCCCEEeeechHHHhCCCcCCCCCccchhhccccCcCcccccccccccccccccccCCCCcccchHHhhHHHHHHH
Confidence 34699999999999999999999999999999999887555431 1 1 15788999999999999999
Q ss_pred HHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhCCCCChHHHHHHHHH
Q 023712 87 AKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIY 166 (278)
Q Consensus 87 k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~y 166 (278)
|+||+++|||||+||||+|+|.+..+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||+|+++++.|++|
T Consensus 83 ~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~GGW~n~~~v~~F~~Y 162 (478)
T PRK09593 83 AEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIEEYGGWRNRKMVGFYERL 162 (478)
T ss_pred HHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHhhcCCCCChHHHHHHHHH
Confidence 99999999999999999999743169999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcceEEEecCcccccccCcc-ccc-cCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEc
Q 023712 167 ADTCFASFGDRVKNWITINEPLQTAVNGYC-TGI-FAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGL 244 (278)
Q Consensus 167 a~~v~~~~gd~V~~w~t~NEP~~~~~~gy~-~g~-~~P~~~~~~~~~~~~~~h~~l~AHa~a~~~~r~~~~~~~~~~iGi 244 (278)
|+.|+++|||+|++|+|||||++++..||. .|. +|||.. +.++.++|+||+++|||+||++||+.. |+++||+
T Consensus 163 A~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~--~~~~~~~a~h~~llAHa~A~~~~~~~~---~~g~VGi 237 (478)
T PRK09593 163 CRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGEN--KEQVKYQAAHHELVASAIATKIAHEVD---PENKVGC 237 (478)
T ss_pred HHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCc--hhhhHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEE
Confidence 999999999999999999999999988886 454 477642 345689999999999999999999864 6899999
Q ss_pred eecCceeeeCCCCcc--cchhhHh
Q 023712 245 VVDCEWAEARSSVRR--QHPNGFM 266 (278)
Q Consensus 245 ~~~~~~~~p~~~~~~--d~~~~~~ 266 (278)
+++..++||.+++++ +++++..
T Consensus 238 ~~~~~~~~P~~~~~~D~~aa~~~~ 261 (478)
T PRK09593 238 MLAAGQYYPNTCHPEDVWAAMKED 261 (478)
T ss_pred EEeCCeeEeCCCCHHHHHHHHHHH
Confidence 999999999987775 3444443
No 9
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=1.7e-74 Score=564.07 Aligned_cols=242 Identities=35% Similarity=0.628 Sum_probs=213.8
Q ss_pred CCCCCceeeeeccccccccccCCCCCCCceeeeec---c-cCCccc----cCC--CCCccCCcccCcHHHHHHHHHcCCC
Q 023712 23 DFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFT---H-TEGKII----DKS--NGDVAVDHYHRYKEDIDLIAKLGFD 92 (278)
Q Consensus 23 ~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wD~~~---~-~~~~~~----~~~--~~~~a~d~y~~y~eDi~l~k~lG~~ 92 (278)
+||++|+||+||||||+||+++++|||+|+||+++ + .++++. ++. ++++||||||||+|||+|||+||++
T Consensus 3 ~fP~~FlwG~AtsA~QiEGa~~~~gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~a~D~Yhry~eDi~Lm~~lG~~ 82 (476)
T PRK09589 3 GFKKGFLWGGAVAAHQLEGGWNEGGKGISVADVMTAGAHGVPREITEGVIEGKNYPNHEAIDFYHRYKEDIALFAEMGFK 82 (476)
T ss_pred CCCCCCEEeeechHhhhcCCcCCCCCCCchhcccccccccCccccccCccCCCcCCCcccccHHHhhHHHHHHHHHcCCC
Confidence 69999999999999999999999999999999988 3 244432 222 5788999999999999999999999
Q ss_pred eeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhCCCCChHHHHHHHHHHHHHHH
Q 023712 93 AYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFA 172 (278)
Q Consensus 93 ~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v~~ 172 (278)
+|||||+||||+|+|.+..+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||+|+++++.|++||+.|++
T Consensus 83 ~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~ 162 (476)
T PRK09589 83 CFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEYGGWRNRKLIDFFVRFAEVVFT 162 (476)
T ss_pred EEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhcCCcCChHHHHHHHHHHHHHHH
Confidence 99999999999999743168999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcceEEEecCccccccc-----Ccc-ccc-cCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEce
Q 023712 173 SFGDRVKNWITINEPLQTAVN-----GYC-TGI-FAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLV 245 (278)
Q Consensus 173 ~~gd~V~~w~t~NEP~~~~~~-----gy~-~g~-~~P~~~~~~~~~~~~~~h~~l~AHa~a~~~~r~~~~~~~~~~iGi~ 245 (278)
+|||+|++|+|||||++++.. ||. .|. +|||.. .....++++||+++|||+|++++|++. ++++||++
T Consensus 163 ~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~--~~~~~~~~~h~~llAha~A~~~~~~~~---~~~~iG~~ 237 (476)
T PRK09589 163 RYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGED--REQIMYQAAHYELVASALAVKTGHEIN---PDFQIGCM 237 (476)
T ss_pred HhcCCCCEEEEecchhhhhccccccCCccccccccCCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhC---CCCcEEEE
Confidence 999999999999999998766 555 454 477642 234579999999999999999999975 58899999
Q ss_pred ecCceeeeCCCCcc--cchhhHhhHH
Q 023712 246 VDCEWAEARSSVRR--QHPNGFMLFH 269 (278)
Q Consensus 246 ~~~~~~~p~~~~~~--d~~~~~~~f~ 269 (278)
++..++||.+++++ .++++.++|+
T Consensus 238 ~~~~~~~P~~~~~~d~~aa~~~~~~~ 263 (476)
T PRK09589 238 IAMCPIYPLTCAPNDMMMATKAMHRR 263 (476)
T ss_pred EeCCeeeeCCCCHHHHHHHHHHHHhc
Confidence 99999999987775 4566766554
No 10
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=9.8e-74 Score=558.50 Aligned_cols=243 Identities=35% Similarity=0.639 Sum_probs=214.8
Q ss_pred CCCCCCCCCceeeeeccccccccccCCCCCCCceeeeec---c-cCCccc----cC--CCCCccCCcccCcHHHHHHHHH
Q 023712 19 VSKTDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFT---H-TEGKII----DK--SNGDVAVDHYHRYKEDIDLIAK 88 (278)
Q Consensus 19 ~~~~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wD~~~---~-~~~~~~----~~--~~~~~a~d~y~~y~eDi~l~k~ 88 (278)
|++.+||++|+||+||||||+||+++++|||+|+||+++ + .++++. .+ .++++||||||||+|||+|||+
T Consensus 1 ~~~~~FP~~FlwG~AtsA~QiEGa~~e~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~EDI~Lm~e 80 (477)
T PRK15014 1 MKKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVVPGKYYPNHEAVDFYGHYKEDIKLFAE 80 (477)
T ss_pred CCcCCCCCCCEEeeecHHHHhCCCcCCCCCcccHhhccccccccCccccccccccCCcCCCCcccCcccccHHHHHHHHH
Confidence 456789999999999999999999999999999999988 3 244431 22 2678899999999999999999
Q ss_pred cCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhCCCCChHHHHHHHHHHH
Q 023712 89 LGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYAD 168 (278)
Q Consensus 89 lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~ 168 (278)
||+++|||||+|+||+|+|.+..+|++||++|+++|++|+++||+|+|||+|||+|+||+++||||.|+++++.|++||+
T Consensus 81 lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~~~~F~~Ya~ 160 (477)
T PRK15014 81 MGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAE 160 (477)
T ss_pred cCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChHHHHHHHHHHH
Confidence 99999999999999999975326899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcceEEEecCcccc-----cccCccc-ccc-CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCe
Q 023712 169 TCFASFGDRVKNWITINEPLQT-----AVNGYCT-GIF-APGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGN 241 (278)
Q Consensus 169 ~v~~~~gd~V~~w~t~NEP~~~-----~~~gy~~-g~~-~P~~~~~~~~~~~~~~h~~l~AHa~a~~~~r~~~~~~~~~~ 241 (278)
.||++|||+|++|+|+|||+++ +..||.. |.+ ||+.. ...+.++|+||+++|||+||+++|+.. ++++
T Consensus 161 ~~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~--~~~~~~~~~h~~llAHa~A~~~~~~~~---~~~~ 235 (477)
T PRK15014 161 VVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHEN--PEETMYQVLHHQFVASALAVKAARRIN---PEMK 235 (477)
T ss_pred HHHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhC---CCCe
Confidence 9999999999999999999987 6778884 765 45432 335689999999999999999999975 5899
Q ss_pred EEceecCceeeeCCCCcc--cchhhHh
Q 023712 242 IGLVVDCEWAEARSSVRR--QHPNGFM 266 (278)
Q Consensus 242 iGi~~~~~~~~p~~~~~~--d~~~~~~ 266 (278)
||++++..++||.+++++ +++++.+
T Consensus 236 IGi~~~~~~~~P~~~~~~D~~Aa~~~~ 262 (477)
T PRK15014 236 VGCMLAMVPLYPYSCNPDDVMFAQESM 262 (477)
T ss_pred EEEEEeCceeccCCCCHHHHHHHHHHH
Confidence 999999999999987775 4455544
No 11
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=1.3e-74 Score=562.84 Aligned_cols=241 Identities=54% Similarity=0.943 Sum_probs=217.3
Q ss_pred CCCCCCceeeeeccccccccccCCCCCCCceeeeecccCCccccCCCCCccCCcccCcHHHHHHHHHcCCCeeeeccccc
Q 023712 22 TDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSISWS 101 (278)
Q Consensus 22 ~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wD~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~k~lG~~~~R~si~Ws 101 (278)
.+||++|+||+||||||+||++++|||++|+||.|++.++++.++.+++.||||||||+|||+|||+||+++|||||+|+
T Consensus 3 ~~fp~~F~wG~atsa~Q~EG~~~~dGkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W~ 82 (455)
T PF00232_consen 3 KKFPEDFLWGVATSAYQIEGAWNEDGKGPSIWDTFCHEPGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISWS 82 (455)
T ss_dssp GGS-TT-EEEEE--HHHHSSSTTSTTSTTBHHHHHHHSTTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--HH
T ss_pred CCCCCCCeEEEeceeccccceecCCCCCcccccccccccceeeccccCcccccchhhhhHHHHHHHhhccceeeeecchh
Confidence 47999999999999999999999999999999999998888888888999999999999999999999999999999999
Q ss_pred ccccCC-CCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhCCCCChHHHHHHHHHHHHHHHHhCCCcce
Q 023712 102 RIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKN 180 (278)
Q Consensus 102 Ri~P~~-~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v~~~~gd~V~~ 180 (278)
||+|+| .| .+|++++++|+++|++|+++||+|+|||+|||+|+||++ +|||.|+++++.|++||+.|+++|||+|++
T Consensus 83 Ri~P~g~~g-~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~ 160 (455)
T PF00232_consen 83 RIFPDGFEG-KVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRVKY 160 (455)
T ss_dssp HHSTTSSSS-SS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTBSE
T ss_pred heeeccccc-ccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCcce
Confidence 999998 68 999999999999999999999999999999999999998 799999999999999999999999999999
Q ss_pred EEEecCcccccccCccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEceecCceeeeCCCCccc
Q 023712 181 WITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWAEARSSVRRQ 260 (278)
Q Consensus 181 w~t~NEP~~~~~~gy~~g~~~P~~~~~~~~~~~~~~h~~l~AHa~a~~~~r~~~~~~~~~~iGi~~~~~~~~p~~~~~~d 260 (278)
|+|+|||++++..||+.|.+|||.. +.++.++++||+++||++|++++|+++ ++++|||+++..+++|.++++++
T Consensus 161 w~T~NEp~~~~~~~y~~g~~~p~~~--~~~~~~~~~h~~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~P~~~~~~d 235 (455)
T PF00232_consen 161 WITFNEPNVFALLGYLYGGFPPGRD--SLKAFYQAAHNLLLAHAKAVKAIKEKY---PDGKIGIALNFSPFYPLSPSPED 235 (455)
T ss_dssp EEEEETHHHHHHHHHTSSSSTTCSS--THHHHHHHHHHHHHHHHHHHHHHHHHT---CTSEEEEEEEEEEEEESSSSHHH
T ss_pred EEeccccceeecccccccccccccc--ccchhhHHHhhHHHHHHHHHHHHhhcc---cceEEeccccccccCCCCccchh
Confidence 9999999999999999999999964 567899999999999999999999986 69999999999999999988764
Q ss_pred ---chhhHhhHH
Q 023712 261 ---HPNGFMLFH 269 (278)
Q Consensus 261 ---~~~~~~~f~ 269 (278)
++++..+|.
T Consensus 236 ~~~Aa~~~~~~~ 247 (455)
T PF00232_consen 236 DVAAAERADEFH 247 (455)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHh
Confidence 456666665
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=6.2e-72 Score=545.24 Aligned_cols=233 Identities=36% Similarity=0.665 Sum_probs=212.2
Q ss_pred CCCCCceeeeeccccccccccCCCCCCCceeeeecccCCccc------------cC--CCCCccCCcccCcHHHHHHHHH
Q 023712 23 DFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKII------------DK--SNGDVAVDHYHRYKEDIDLIAK 88 (278)
Q Consensus 23 ~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wD~~~~~~~~~~------------~~--~~~~~a~d~y~~y~eDi~l~k~ 88 (278)
+||++|+||+||||||+||+++++|||+|+||++++.++++. .+ .++++||||||||+|||+||++
T Consensus 3 ~FP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~eDi~l~~~ 82 (474)
T PRK09852 3 VFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEFYPSHEAIDFYHRYKEDIALMAE 82 (474)
T ss_pred CCCCCCEEeccchHhhcCCCcCCCCCCCchhhccccCCCcccccccccccccccccCcCCCCccCchhhhhHHHHHHHHH
Confidence 699999999999999999999999999999999987555442 11 1568899999999999999999
Q ss_pred cCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhCCCCChHHHHHHHHHHH
Q 023712 89 LGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYAD 168 (278)
Q Consensus 89 lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~ 168 (278)
||+++|||||+|+||+|++.+..+|+++|++|+++|++|+++||+|+|||+|||+|+||+++||||+|+++++.|++||+
T Consensus 83 lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~GGW~~~~~~~~F~~ya~ 162 (474)
T PRK09852 83 MGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKMVEFFSRYAR 162 (474)
T ss_pred cCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999975326899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcceEEEecCcccccccCcc-ccc-cCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEcee
Q 023712 169 TCFASFGDRVKNWITINEPLQTAVNGYC-TGI-FAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVV 246 (278)
Q Consensus 169 ~v~~~~gd~V~~w~t~NEP~~~~~~gy~-~g~-~~P~~~~~~~~~~~~~~h~~l~AHa~a~~~~r~~~~~~~~~~iGi~~ 246 (278)
.|+++|||+|++|+|||||++++..||. .|. +||+.. .....++++||+++|||+||+++|++. ++++||+++
T Consensus 163 ~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~--~~~~~~~~~hn~llAHa~A~~~~~~~~---~~~~IGi~~ 237 (474)
T PRK09852 163 TCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGEN--QDQVKYQAAHHELVASALATKIAHEVN---PQNQVGCML 237 (474)
T ss_pred HHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCC--chHhHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEE
Confidence 9999999999999999999999999996 664 588752 335689999999999999999999975 589999999
Q ss_pred cCceeeeCCCCccc
Q 023712 247 DCEWAEARSSVRRQ 260 (278)
Q Consensus 247 ~~~~~~p~~~~~~d 260 (278)
+..++||.+++++|
T Consensus 238 ~~~~~~P~~~~~~d 251 (474)
T PRK09852 238 AGGNFYPYSCKPED 251 (474)
T ss_pred eCCeeeeCCCCHHH
Confidence 99999999887764
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=4.7e-71 Score=533.98 Aligned_cols=239 Identities=47% Similarity=0.893 Sum_probs=222.1
Q ss_pred CCCCceeeeeccccccccccCCCCCCCceeeeecccCCccccCCCCCccCCcccCcHHHHHHHHHcCCCeeeeccccccc
Q 023712 24 FPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSISWSRI 103 (278)
Q Consensus 24 fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wD~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~k~lG~~~~R~si~WsRi 103 (278)
||++|+||+||||||+||+++++|||+|+||++.+.++++.++.++++||||||+|+|||++|++||+++|||||+|+||
T Consensus 1 fp~~FlwG~atsa~Q~EG~~~~~gkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri 80 (427)
T TIGR03356 1 FPKDFLWGVATASYQIEGAVNEDGRGPSIWDTFSHTPGKVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPRI 80 (427)
T ss_pred CCCCCEEeeechHHhhCCCcCCCCCccchhheeccCCCcccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhhc
Confidence 89999999999999999999999999999999987667665666889999999999999999999999999999999999
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhCCCCChHHHHHHHHHHHHHHHHhCCCcceEEE
Q 023712 104 FPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKNWIT 183 (278)
Q Consensus 104 ~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v~~~~gd~V~~w~t 183 (278)
+|+++| .+|++++++|+++|++|+++||+|+|||+|||+|+||+++ |||.++++++.|++||+.|+++|||+|++|+|
T Consensus 81 ~p~g~~-~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t 158 (427)
T TIGR03356 81 FPEGTG-PVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHWIT 158 (427)
T ss_pred ccCCCC-CcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEEEE
Confidence 999768 8999999999999999999999999999999999999988 99999999999999999999999999999999
Q ss_pred ecCcccccccCccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEceecCceeeeCCCCcc--cc
Q 023712 184 INEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWAEARSSVRR--QH 261 (278)
Q Consensus 184 ~NEP~~~~~~gy~~g~~~P~~~~~~~~~~~~~~h~~l~AHa~a~~~~r~~~~~~~~~~iGi~~~~~~~~p~~~~~~--d~ 261 (278)
+|||++++..||..|.+||+.. +....++++||+++|||+|++++|++. ++++||++++..++||.+++++ ++
T Consensus 159 ~NEp~~~~~~~y~~G~~~P~~~--~~~~~~~~~hnll~Aha~A~~~~~~~~---~~~~IGi~~~~~~~~P~~~~~~d~~a 233 (427)
T TIGR03356 159 LNEPWCSAFLGYGLGVHAPGLR--DLRAALQAAHHLLLAHGLAVQALRANG---PGAQVGIVLNLTPVYPASDSPEDVAA 233 (427)
T ss_pred ecCcceecccchhhccCCCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEEeCCeeeeCCCCHHHHHH
Confidence 9999999999999999999853 224579999999999999999999976 5899999999999999987775 45
Q ss_pred hhhHhhHH
Q 023712 262 PNGFMLFH 269 (278)
Q Consensus 262 ~~~~~~f~ 269 (278)
+++.++|.
T Consensus 234 a~~~~~~~ 241 (427)
T TIGR03356 234 ARRADGLL 241 (427)
T ss_pred HHHHHHHH
Confidence 66777665
No 14
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.45 E-value=1.7e-13 Score=130.66 Aligned_cols=108 Identities=23% Similarity=0.460 Sum_probs=87.7
Q ss_pred cCcHHHHHHHHHcCCCeeee-cccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHhhh----
Q 023712 77 HRYKEDIDLIAKLGFDAYRF-SISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESM---- 151 (278)
Q Consensus 77 ~~y~eDi~l~k~lG~~~~R~-si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~---- 151 (278)
+.+++|+++|+++|+|++|+ .++|++|||++ | .+|. ..+|++|+.+.++||++++.+.+...|.||.+++
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~e-G-~ydF---~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~ 84 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEE-G-QYDF---SWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEIL 84 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBT-T-B------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCCC-C-eeec---HHHHHHHHHHHhccCeEEEEecccccccchhhhccccc
Confidence 56899999999999999997 57999999998 9 9995 6799999999999999999999999999998753
Q ss_pred -----------CCC-----CChHHHHHHHHHHHHHHHHhCCC--cceEEEecCccc
Q 023712 152 -----------GGW-----LNKEIVKYFEIYADTCFASFGDR--VKNWITINEPLQ 189 (278)
Q Consensus 152 -----------ggw-----~~~~~~~~F~~ya~~v~~~~gd~--V~~w~t~NEP~~ 189 (278)
|+. .+|...+.+.++++.++++|++. |-.|.+.|||..
T Consensus 85 ~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 85 PVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp -B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred ccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 111 24667888888899999999985 778999999976
No 15
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.43 E-value=5.3e-13 Score=120.17 Aligned_cols=109 Identities=22% Similarity=0.337 Sum_probs=90.7
Q ss_pred CcHHHHHHHHHcCCCeeeecccccccc-cCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhCCC-C
Q 023712 78 RYKEDIDLIAKLGFDAYRFSISWSRIF-PDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGW-L 155 (278)
Q Consensus 78 ~y~eDi~l~k~lG~~~~R~si~WsRi~-P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw-~ 155 (278)
..++|++.|+++|+|++|+.|.|..++ |.+.+ .++...++.++++|+.+.++||.+||+||+. |.|.... ++. .
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~-~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~~~~-~~~~~ 97 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGY-NYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWANGG-DGYGN 97 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTT-SBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCSSST-STTTT
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCc-cccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccccccc-ccccc
Confidence 568999999999999999999998888 55544 6899999999999999999999999999974 7774332 233 3
Q ss_pred ChHHHHHHHHHHHHHHHHhCC--CcceEEEecCcccc
Q 023712 156 NKEIVKYFEIYADTCFASFGD--RVKNWITINEPLQT 190 (278)
Q Consensus 156 ~~~~~~~F~~ya~~v~~~~gd--~V~~w~t~NEP~~~ 190 (278)
.....+.|.++++.++++|++ .|..|.++|||...
T Consensus 98 ~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~ 134 (281)
T PF00150_consen 98 NDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGG 134 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCST
T ss_pred chhhHHHHHhhhhhhccccCCCCcEEEEEecCCcccc
Confidence 445688899999999999955 58899999999974
No 16
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.85 E-value=9.4e-09 Score=93.23 Aligned_cols=84 Identities=18% Similarity=0.384 Sum_probs=71.7
Q ss_pred ccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCcc--EEeeccCCCchhhHhhhCCCCChHHHHHHHHHHHHHHHHhC
Q 023712 98 ISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQP--YVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFG 175 (278)
Q Consensus 98 i~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~p--ivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v~~~~g 175 (278)
+.|++++|++ | .+|. +..|.+++.++++||++ .+.+.|...|.|+... + .++..+.+.+|++.+++||+
T Consensus 1 ~kW~~~ep~~-G-~~n~---~~~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~--~--~~~~~~~~~~~i~~v~~ry~ 71 (254)
T smart00633 1 MKWDSTEPSR-G-QFNF---SGADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL--S--KETLLARLENHIKTVVGRYK 71 (254)
T ss_pred CCcccccCCC-C-ccCh---HHHHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC--C--HHHHHHHHHHHHHHHHHHhC
Confidence 3699999997 9 9996 56789999999999995 4456777899998742 2 45678999999999999999
Q ss_pred CCcceEEEecCcccc
Q 023712 176 DRVKNWITINEPLQT 190 (278)
Q Consensus 176 d~V~~w~t~NEP~~~ 190 (278)
++|..|.++|||...
T Consensus 72 g~i~~wdV~NE~~~~ 86 (254)
T smart00633 72 GKIYAWDVVNEALHD 86 (254)
T ss_pred CcceEEEEeeecccC
Confidence 999999999999863
No 17
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.79 E-value=1.1e-08 Score=103.87 Aligned_cols=119 Identities=20% Similarity=0.386 Sum_probs=93.1
Q ss_pred CcHHHHHHHHHcCCCeeeec-ccccccccCCCCCCCChhHHHHHHHH-HHHHHhcCCccEEee-ccCCCchhhHhhh---
Q 023712 78 RYKEDIDLIAKLGFDAYRFS-ISWSRIFPDGLGTKINMEGITFYNNI-IDALLQKGIQPYVTL-YHWDLPLHLHESM--- 151 (278)
Q Consensus 78 ~y~eDi~l~k~lG~~~~R~s-i~WsRi~P~~~G~~~n~~~l~~y~~~-i~~l~~~GI~pivtL-~H~~~P~wl~~~~--- 151 (278)
-+++|++.||++|+|++|++ ++|++++|+. | .+|.+ +.|.. ++.+.+.||.+|+.. .....|.|+.++|
T Consensus 31 ~w~ddl~~mk~~G~N~V~ig~faW~~~eP~e-G-~fdf~---~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~Pei 105 (673)
T COG1874 31 TWMDDLRKMKALGLNTVRIGYFAWNLHEPEE-G-KFDFT---WLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPEI 105 (673)
T ss_pred HHHHHHHHHHHhCCCeeEeeeEEeeccCccc-c-ccCcc---cchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChhh
Confidence 36789999999999999995 7999999998 9 99965 77888 999999999999998 7889999998865
Q ss_pred ------------CCCCChHH-HHHHHHHHHH----HHHH-hCCC--cceEEEecCccc-ccccCccccccC
Q 023712 152 ------------GGWLNKEI-VKYFEIYADT----CFAS-FGDR--VKNWITINEPLQ-TAVNGYCTGIFA 201 (278)
Q Consensus 152 ------------ggw~~~~~-~~~F~~ya~~----v~~~-~gd~--V~~w~t~NEP~~-~~~~gy~~g~~~ 201 (278)
|+|.+-.. ...|..|++. +.+| ||+. |-.|.+-||-.. .+.+.|+...|+
T Consensus 106 L~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~~~~f~ 176 (673)
T COG1874 106 LAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYCQAAFR 176 (673)
T ss_pred eEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCccccccccHHHHH
Confidence 55643222 2245556655 8888 8875 778999998766 555555544443
No 18
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=98.43 E-value=9.1e-07 Score=85.68 Aligned_cols=110 Identities=21% Similarity=0.204 Sum_probs=81.9
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCC-CCCCCC-hhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHhhh---CCC
Q 023712 80 KEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKIN-MEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESM---GGW 154 (278)
Q Consensus 80 ~eDi~l~k~lG~~~~R~si~WsRi~P~~-~G~~~n-~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~---ggw 154 (278)
++|+..||+.|+|++|+.+.|..+.+.. ..+.+. ...+.+.+++|+.+++.||.++++||+..-+.-=.+.. +.+
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 8999999999999999999866665542 111333 44566999999999999999999999865222111110 112
Q ss_pred C-ChHHHHHHHHHHHHHHHHhCCC--cceEEEecCccc
Q 023712 155 L-NKEIVKYFEIYADTCFASFGDR--VKNWITINEPLQ 189 (278)
Q Consensus 155 ~-~~~~~~~F~~ya~~v~~~~gd~--V~~w~t~NEP~~ 189 (278)
. ..+.++++.+-.+.++.||++. |-...++|||+.
T Consensus 156 ~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 156 KEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred cccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 2 3457799999999999999984 555789999995
No 19
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=98.06 E-value=3.5e-05 Score=72.44 Aligned_cols=123 Identities=21% Similarity=0.322 Sum_probs=87.0
Q ss_pred CCCCceeeeeccccccccccCCCCCCCceeeeecccCCccccCCCCCccCCcccCcHHHHHHHHHcCCCeeee--ccccc
Q 023712 24 FPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRF--SISWS 101 (278)
Q Consensus 24 fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wD~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~k~lG~~~~R~--si~Ws 101 (278)
...+|.+|+|.++.++++.. ....+-.--+|.+-. .+-|.
T Consensus 6 ~~~~f~~G~av~~~~~~~~~--------------------------------------~~~~~~~~~Fn~~t~eN~~Kw~ 47 (320)
T PF00331_consen 6 AKHKFPFGAAVNAQQLEDDP--------------------------------------RYRELFAKHFNSVTPENEMKWG 47 (320)
T ss_dssp HCTTTEEEEEEBGGGHTHHH--------------------------------------HHHHHHHHH-SEEEESSTTSHH
T ss_pred HhccCCEEEEechhHcCCcH--------------------------------------HHHHHHHHhCCeeeeccccchh
Confidence 45678999999998888741 011111123444443 47899
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEE--eeccCCCchhhHhhhCCCCChH---HHHHHHHHHHHHHHHhC-
Q 023712 102 RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYV--TLYHWDLPLHLHESMGGWLNKE---IVKYFEIYADTCFASFG- 175 (278)
Q Consensus 102 Ri~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~piv--tL~H~~~P~wl~~~~ggw~~~~---~~~~F~~ya~~v~~~~g- 175 (278)
.++|.+ | .+|. +..|++++-++++||++-. .+.|--.|.|+... .-+...+ ......+|.+.+++||+
T Consensus 48 ~~e~~~-g-~~~~---~~~D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~-~~~~~~~~~~~~~~l~~~I~~v~~~y~~ 121 (320)
T PF00331_consen 48 SIEPEP-G-RFNF---ESADAILDWARENGIKVRGHTLVWHSQTPDWVFNL-ANGSPDEKEELRARLENHIKTVVTRYKD 121 (320)
T ss_dssp HHESBT-T-BEE----HHHHHHHHHHHHTT-EEEEEEEEESSSS-HHHHTS-TTSSBHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hhcCCC-C-ccCc---cchhHHHHHHHhcCcceeeeeEEEcccccceeeec-cCCCcccHHHHHHHHHHHHHHHHhHhcc
Confidence 999997 8 8996 5679999999999999874 44466789999863 1223333 78888999999999999
Q ss_pred -CCcceEEEecCcccc
Q 023712 176 -DRVKNWITINEPLQT 190 (278)
Q Consensus 176 -d~V~~w~t~NEP~~~ 190 (278)
++|..|-++|||...
T Consensus 122 ~g~i~~WDVvNE~i~~ 137 (320)
T PF00331_consen 122 KGRIYAWDVVNEAIDD 137 (320)
T ss_dssp TTTESEEEEEES-B-T
T ss_pred ccceEEEEEeeecccC
Confidence 489999999999764
No 20
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=98.01 E-value=2.5e-05 Score=77.30 Aligned_cols=107 Identities=24% Similarity=0.401 Sum_probs=62.5
Q ss_pred cHHHHHHH-HHcCCCeeeec--c--ccccccc-CCCCC-CCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHhh-
Q 023712 79 YKEDIDLI-AKLGFDAYRFS--I--SWSRIFP-DGLGT-KINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHES- 150 (278)
Q Consensus 79 y~eDi~l~-k~lG~~~~R~s--i--~WsRi~P-~~~G~-~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~- 150 (278)
+.+.+..+ +++|++.+||- + +..-..+ ++.|. .+| +...|+++|.|+++||+|+|.|-. +|.++...
T Consensus 41 ~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Yn---f~~lD~i~D~l~~~g~~P~vel~f--~p~~~~~~~ 115 (486)
T PF01229_consen 41 WQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYN---FTYLDQILDFLLENGLKPFVELGF--MPMALASGY 115 (486)
T ss_dssp HHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE-----HHHHHHHHHHHHCT-EEEEEE-S--B-GGGBSS-
T ss_pred HHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCC---hHHHHHHHHHHHHcCCEEEEEEEe--chhhhcCCC
Confidence 44555555 59999999986 3 2222222 22231 268 478899999999999999999975 67776532
Q ss_pred -----hCCCC-ChHHHHHHHHHHHHHHHH----hCC-Ccc--eEEEecCcccc
Q 023712 151 -----MGGWL-NKEIVKYFEIYADTCFAS----FGD-RVK--NWITINEPLQT 190 (278)
Q Consensus 151 -----~ggw~-~~~~~~~F~~ya~~v~~~----~gd-~V~--~w~t~NEP~~~ 190 (278)
+.|+. .|...+.+.++++.+++| ||. .|. +|.+||||+..
T Consensus 116 ~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~ 168 (486)
T PF01229_consen 116 QTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLK 168 (486)
T ss_dssp -EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTST
T ss_pred CccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcc
Confidence 12232 345677777777666655 542 355 56899999974
No 21
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=97.84 E-value=7.7e-05 Score=70.16 Aligned_cols=110 Identities=12% Similarity=0.141 Sum_probs=75.9
Q ss_pred cCcHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeec--------cCCCchhhH
Q 023712 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY--------HWDLPLHLH 148 (278)
Q Consensus 77 ~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~--------H~~~P~wl~ 148 (278)
..|++-++.||++|+|++-+-|.|.--||.+ | .+|.++..=.+.+|+.++++||.+|+-.= .-++|.||.
T Consensus 24 ~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~-g-~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~ 101 (319)
T PF01301_consen 24 EYWRDRLQKMKAAGLNTVSTYVPWNLHEPEE-G-QFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLL 101 (319)
T ss_dssp GGHHHHHHHHHHTT-SEEEEE--HHHHSSBT-T-B---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGG
T ss_pred hHHHHHHHHHHhCCcceEEEeccccccCCCC-C-cccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhh
Confidence 3477889999999999999999999999997 9 99999988899999999999999877432 246999998
Q ss_pred hhhCCC---CChHHHHHHHHHHHHHHHHhCC-------CcceEEEecCcc
Q 023712 149 ESMGGW---LNKEIVKYFEIYADTCFASFGD-------RVKNWITINEPL 188 (278)
Q Consensus 149 ~~~ggw---~~~~~~~~F~~ya~~v~~~~gd-------~V~~w~t~NEP~ 188 (278)
.+.+.. .++...+.-.+|.+.+++...+ -|-.-++=||..
T Consensus 102 ~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg 151 (319)
T PF01301_consen 102 RKPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYG 151 (319)
T ss_dssp GSTTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGG
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhC
Confidence 763332 2455666666676776666644 355677888855
No 22
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=97.38 E-value=0.0057 Score=57.96 Aligned_cols=141 Identities=13% Similarity=0.170 Sum_probs=88.0
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhH----hhhCCCC
Q 023712 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLH----ESMGGWL 155 (278)
Q Consensus 80 ~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~----~~~ggw~ 155 (278)
++=+++||+.|+|++|+-+ | +-|...| ..| ++.-.++..+++++||+++|++|-=| .|-. .+-..|.
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~~g-~~~---~~~~~~~akrak~~Gm~vlldfHYSD--~WaDPg~Q~~P~aW~ 97 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYDGG-YND---LEDVIALAKRAKAAGMKVLLDFHYSD--FWADPGKQNKPAAWA 97 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTT-TTS---HHHHHHHHHHHHHTT-EEEEEE-SSS--S--BTTB-B--TTCT
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcccc-cCC---HHHHHHHHHHHHHCCCeEEEeecccC--CCCCCCCCCCCccCC
Confidence 3457999999999999987 3 4554325 455 57888999999999999999998322 2321 1124687
Q ss_pred C---hHHHHHHHHHHHHHHHHhCC---CcceEEEecCcccccccCccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 023712 156 N---KEIVKYFEIYADTCFASFGD---RVKNWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSV 229 (278)
Q Consensus 156 ~---~~~~~~F~~ya~~v~~~~gd---~V~~w~t~NEP~~~~~~gy~~g~~~P~~~~~~~~~~~~~~h~~l~AHa~a~~~ 229 (278)
+ .+..+.-.+|.+.+.+.+++ .++++++=||.+.-.. +|.|.. .-+.-+-.++.|-.+||
T Consensus 98 ~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gml-------wp~g~~-----~~~~~~a~ll~ag~~AV-- 163 (332)
T PF07745_consen 98 NLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGML-------WPDGKP-----SNWDNLAKLLNAGIKAV-- 163 (332)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGEST-------BTTTCT-----T-HHHHHHHHHHHHHHH--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCcccccccc-------CcCCCc-----cCHHHHHHHHHHHHHHH--
Confidence 6 56778888999888877754 5888999999875221 444432 12334445666655554
Q ss_pred HHHHhcCCCCCeEEceec
Q 023712 230 YQRKYKDKQGGNIGLVVD 247 (278)
Q Consensus 230 ~r~~~~~~~~~~iGi~~~ 247 (278)
|+.. +..||.+.+.
T Consensus 164 -r~~~---p~~kV~lH~~ 177 (332)
T PF07745_consen 164 -REVD---PNIKVMLHLA 177 (332)
T ss_dssp -HTHS---STSEEEEEES
T ss_pred -HhcC---CCCcEEEEEC
Confidence 4454 5778876654
No 23
>PLN03059 beta-galactosidase; Provisional
Probab=97.22 E-value=0.0042 Score=64.94 Aligned_cols=108 Identities=14% Similarity=0.135 Sum_probs=86.1
Q ss_pred cCcHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEee--------ccCCCchhhH
Q 023712 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL--------YHWDLPLHLH 148 (278)
Q Consensus 77 ~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL--------~H~~~P~wl~ 148 (278)
..|++=++.||++|+|++-+=+.|.--||.+ | .+|.+|..=..+.|+.+.+.||-+|+-. ..-++|.||.
T Consensus 59 ~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~-G-~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~ 136 (840)
T PLN03059 59 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSP-G-NYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLK 136 (840)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecccccCCCC-C-eeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhh
Confidence 3466678999999999999999999999997 9 9999999999999999999999888753 2468999998
Q ss_pred hhhCCCC----ChHHHHHHHHHHHHHHHHhC---------CCcceEEEecCc
Q 023712 149 ESMGGWL----NKEIVKYFEIYADTCFASFG---------DRVKNWITINEP 187 (278)
Q Consensus 149 ~~~ggw~----~~~~~~~F~~ya~~v~~~~g---------d~V~~w~t~NEP 187 (278)
.. .|.. ++...++-.+|.+.++...+ +-|-..++=||-
T Consensus 137 ~~-~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEY 187 (840)
T PLN03059 137 YV-PGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEY 187 (840)
T ss_pred cC-CCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccc
Confidence 54 4432 56667777777777777663 335566777774
No 24
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.01 E-value=0.004 Score=57.75 Aligned_cols=103 Identities=20% Similarity=0.319 Sum_probs=64.1
Q ss_pred HHHHHHHHHcCCCeeeecc--ccccc--------cc--CCC-C----CCCChhHHHHHHHHHHHHHhcCCccEEeeccCC
Q 023712 80 KEDIDLIAKLGFDAYRFSI--SWSRI--------FP--DGL-G----TKINMEGITFYNNIIDALLQKGIQPYVTLYHWD 142 (278)
Q Consensus 80 ~eDi~l~k~lG~~~~R~si--~WsRi--------~P--~~~-G----~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~ 142 (278)
++-++..++-|+|.+|+.+ .|... .| ..+ + ..+|++-+++.+++|+.|.++||.+.+.+.| +
T Consensus 33 ~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w-g 111 (289)
T PF13204_consen 33 EQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW-G 111 (289)
T ss_dssp HHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS--H
T ss_pred HHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE-C
Confidence 4457889999999999997 45443 11 110 1 1378999999999999999999999877765 2
Q ss_pred CchhhHhhhCCCCC---hHHHHHHHHHHHHHHHHhCCC-cceEEEecCc
Q 023712 143 LPLHLHESMGGWLN---KEIVKYFEIYADTCFASFGDR-VKNWITINEP 187 (278)
Q Consensus 143 ~P~wl~~~~ggw~~---~~~~~~F~~ya~~v~~~~gd~-V~~w~t~NEP 187 (278)
.|. .+ +.|-. .-..+.-.+|.+.|++||+.. -..|++-||-
T Consensus 112 ~~~---~~-~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~ 156 (289)
T PF13204_consen 112 CPY---VP-GTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY 156 (289)
T ss_dssp HHH---H--------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS
T ss_pred Ccc---cc-ccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 221 11 44432 223677789999999999998 5789999997
No 25
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=96.98 E-value=0.0015 Score=62.99 Aligned_cols=106 Identities=17% Similarity=0.332 Sum_probs=78.7
Q ss_pred ccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeec-c-----------CCC
Q 023712 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY-H-----------WDL 143 (278)
Q Consensus 76 y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~-H-----------~~~ 143 (278)
+.-.+..++.+|++|++.+-+.+-|--+|+.+++ .+|+ ..|+++++.+++.|++..+.|. | ..+
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~-~ydW---s~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpL 90 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQ-QYDW---SGYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPL 90 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTT-B------HHHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCCC-ccCc---HHHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcC
Confidence 3367889999999999999999999999999778 9996 5799999999999999888763 2 468
Q ss_pred chhhHhh-----------hCC--------CCChHHHHHHHHHHHHHHHHhCCCcceEEEecCcc
Q 023712 144 PLHLHES-----------MGG--------WLNKEIVKYFEIYADTCFASFGDRVKNWITINEPL 188 (278)
Q Consensus 144 P~wl~~~-----------~gg--------w~~~~~~~~F~~ya~~v~~~~gd~V~~w~t~NEP~ 188 (278)
|.|+.+. .|. |....+++.|.+|-+-..++|.+.. -|+-|..
T Consensus 91 P~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~~~~---~~I~~I~ 151 (402)
T PF01373_consen 91 PSWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFSDYL---STITEIQ 151 (402)
T ss_dssp -HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCHHHH---TGEEEEE
T ss_pred CHHHHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHHHHH---hhheEEE
Confidence 9998753 122 3333448999999999888887764 4555543
No 26
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=96.84 E-value=0.0076 Score=55.62 Aligned_cols=93 Identities=17% Similarity=0.163 Sum_probs=61.9
Q ss_pred ccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhC---
Q 023712 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMG--- 152 (278)
Q Consensus 76 y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~g--- 152 (278)
...++.|+.+||++|+|++|++. .| .+ .++++.|-+.||-++.-+.....-.|-. .+
T Consensus 35 ~~~~~~d~~l~k~~G~N~iR~~h-----~p------~~-------~~~~~~cD~~GilV~~e~~~~~~~~~~~--~~~~~ 94 (298)
T PF02836_consen 35 DEAMERDLELMKEMGFNAIRTHH-----YP------PS-------PRFYDLCDELGILVWQEIPLEGHGSWQD--FGNCN 94 (298)
T ss_dssp HHHHHHHHHHHHHTT-SEEEETT-----S--------S-------HHHHHHHHHHT-EEEEE-S-BSCTSSSS--TSCTS
T ss_pred HHHHHHHHHHHHhcCcceEEccc-----cc------Cc-------HHHHHHHhhcCCEEEEeccccccCcccc--CCccc
Confidence 46788999999999999999843 12 22 3456677889999987764322111110 01
Q ss_pred -CCCChHHHHHHHHHHHHHHHHhCCC--cceEEEecCcc
Q 023712 153 -GWLNKEIVKYFEIYADTCFASFGDR--VKNWITINEPL 188 (278)
Q Consensus 153 -gw~~~~~~~~F~~ya~~v~~~~gd~--V~~w~t~NEP~ 188 (278)
--.++...+.+.+-++.+++++.++ |-.|.+.||+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~~ 133 (298)
T PF02836_consen 95 YDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNESD 133 (298)
T ss_dssp CTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESSH
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccCc
Confidence 0135778888888889999999885 88899999983
No 27
>PLN00197 beta-amylase; Provisional
Probab=96.80 E-value=0.0047 Score=61.48 Aligned_cols=107 Identities=16% Similarity=0.244 Sum_probs=82.0
Q ss_pred cCcHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccC------------CCc
Q 023712 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW------------DLP 144 (278)
Q Consensus 77 ~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~------------~~P 144 (278)
.-.+..++.+|.+|++.+-+.+-|--+|+.+++ .+|+ ..|+++++.+++.|++..+.|... .+|
T Consensus 127 ~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~-~YdW---sgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP 202 (573)
T PLN00197 127 KAMKASLQALKSAGVEGIMMDVWWGLVERESPG-VYNW---GGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLP 202 (573)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCC-cCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCC
Confidence 347788999999999999999999999998878 9997 569999999999999988877532 599
Q ss_pred hhhHhhh-----------CCCC----------------ChHHHHHHHHHHHHHHHHhCCCcceEEEecCccc
Q 023712 145 LHLHESM-----------GGWL----------------NKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (278)
Q Consensus 145 ~wl~~~~-----------ggw~----------------~~~~~~~F~~ya~~v~~~~gd~V~~w~t~NEP~~ 189 (278)
.|+.+.. .|.. .+.-++.|.+|-+-...+|.+... -|+.|..+
T Consensus 203 ~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~--~~I~eI~V 272 (573)
T PLN00197 203 KWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLG--DTIVEIQV 272 (573)
T ss_pred HHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhc--CceeEEEe
Confidence 9987620 1211 122368888888888777777544 35666544
No 28
>PLN02803 beta-amylase
Probab=96.78 E-value=0.0046 Score=61.37 Aligned_cols=107 Identities=17% Similarity=0.247 Sum_probs=81.7
Q ss_pred cCcHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccC------------CCc
Q 023712 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW------------DLP 144 (278)
Q Consensus 77 ~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~------------~~P 144 (278)
.-.+..++.+|.+|++.+-+.+-|--+|+.+++ .+|+ ..|+++++.+++.|++..+.|... .+|
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~-~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP 182 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDGPM-KYNW---EGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLP 182 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCC-cCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCC
Confidence 446778999999999999999999999998878 9997 569999999999999988777532 599
Q ss_pred hhhHhh--------h---CCCC----------------ChHHHHHHHHHHHHHHHHhCCCcceEEEecCccc
Q 023712 145 LHLHES--------M---GGWL----------------NKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (278)
Q Consensus 145 ~wl~~~--------~---ggw~----------------~~~~~~~F~~ya~~v~~~~gd~V~~w~t~NEP~~ 189 (278)
.|+.+. | .|.. .+.-++.|.+|-+-...+|.+... -|+.|..+
T Consensus 183 ~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~--~~I~eI~V 252 (548)
T PLN02803 183 PWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLG--GVIAEIQV 252 (548)
T ss_pred HHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 998762 0 1211 222457788888887777776553 46666544
No 29
>PLN02161 beta-amylase
Probab=96.75 E-value=0.0053 Score=60.63 Aligned_cols=111 Identities=14% Similarity=0.262 Sum_probs=84.1
Q ss_pred CCcccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccC-----------
Q 023712 73 VDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW----------- 141 (278)
Q Consensus 73 ~d~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~----------- 141 (278)
.....-.+..++.+|.+|++.+-+.+-|--+|+.+++ .+|+ ..|+++++.+++.|++..+.|...
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~-~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~ 188 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPL-EFKW---SLYEELFRLISEAGLKLHVALCFHSNMHLFGGKGG 188 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCC-cCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccC
Confidence 4556667889999999999999999999999998878 9997 569999999999999988777532
Q ss_pred -CCchhhHhh--------h---CCCC----------------ChHHHHHHHHHHHHHHHHhCCCcceEEEecCccc
Q 023712 142 -DLPLHLHES--------M---GGWL----------------NKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (278)
Q Consensus 142 -~~P~wl~~~--------~---ggw~----------------~~~~~~~F~~ya~~v~~~~gd~V~~w~t~NEP~~ 189 (278)
.+|.|+.+. | .|.. .+.-++.|.+|-+-...+|.+... -|+.|..+
T Consensus 189 IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~--~~I~eI~V 262 (531)
T PLN02161 189 ISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIG--NVIEEISI 262 (531)
T ss_pred ccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 499998752 0 1211 122457888888888778776553 35555443
No 30
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=96.72 E-value=0.0038 Score=59.94 Aligned_cols=101 Identities=19% Similarity=0.307 Sum_probs=54.0
Q ss_pred HHcCCCeeeecc---c------------ccccc--cCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHh
Q 023712 87 AKLGFDAYRFSI---S------------WSRIF--PDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHE 149 (278)
Q Consensus 87 k~lG~~~~R~si---~------------WsRi~--P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~ 149 (278)
+.+|++.+|+.| + |.|.+ +..+| .+|+.+=+-=+.++..++++|+..++ ++-+..|.|+..
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg-~yDW~~D~gQrwfL~~Ak~rGV~~f~-aFSNSPP~~MT~ 134 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADG-SYDWDADAGQRWFLKAAKERGVNIFE-AFSNSPPWWMTK 134 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS--B-TTSSHHHHHHHHHHHHTT---EE-EE-SSS-GGGSS
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCCCC-CcCCCCCHHHHHHHHHHHHcCCCeEE-EeecCCCHHHhc
Confidence 348999999877 3 33322 22236 67765434445589999999999887 444566666654
Q ss_pred hh---CC-----CCChHHHHHHHHHHHHHHHHhCC---CcceEEEecCccc
Q 023712 150 SM---GG-----WLNKEIVKYFEIYADTCFASFGD---RVKNWITINEPLQ 189 (278)
Q Consensus 150 ~~---gg-----w~~~~~~~~F~~ya~~v~~~~gd---~V~~w~t~NEP~~ 189 (278)
.. |+ =+.++..++|++|-..|+++|.. .+++-.++|||+.
T Consensus 135 NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~ 185 (384)
T PF14587_consen 135 NGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQW 185 (384)
T ss_dssp SSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS
T ss_pred CCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCC
Confidence 21 11 13567899999999999999943 5888999999984
No 31
>PLN02801 beta-amylase
Probab=96.69 E-value=0.008 Score=59.40 Aligned_cols=99 Identities=11% Similarity=0.254 Sum_probs=77.5
Q ss_pred ccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeecc------------CCC
Q 023712 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYH------------WDL 143 (278)
Q Consensus 76 y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H------------~~~ 143 (278)
-.-.+..+..+|.+|+..+-+.+-|--+|..+++ .+|+ ..|+++++.+++.|++..+.|.. ..+
T Consensus 36 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~-~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpL 111 (517)
T PLN02801 36 EEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPK-QYDW---SAYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIPI 111 (517)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCC-ccCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccC
Confidence 3446788999999999999999999999998778 9997 56999999999999998777653 359
Q ss_pred chhhHhhh-----------CCCC----------------ChHHHHHHHHHHHHHHHHhCCCc
Q 023712 144 PLHLHESM-----------GGWL----------------NKEIVKYFEIYADTCFASFGDRV 178 (278)
Q Consensus 144 P~wl~~~~-----------ggw~----------------~~~~~~~F~~ya~~v~~~~gd~V 178 (278)
|.|+.+.. .|.. .+..++.|.+|-+-...+|.+..
T Consensus 112 P~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l 173 (517)
T PLN02801 112 PQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFL 173 (517)
T ss_pred CHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 99987520 1211 12246888888888888887654
No 32
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.69 E-value=0.0047 Score=57.88 Aligned_cols=87 Identities=20% Similarity=0.345 Sum_probs=71.0
Q ss_pred ecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEE--eeccCCCchhhHhhhCCCCChHHHHHHHHHHHHHHHH
Q 023712 96 FSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYV--TLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFAS 173 (278)
Q Consensus 96 ~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~piv--tL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v~~~ 173 (278)
--+-|.-|+|+. | .+|++ .=|.+.+-++++||..-- -+.|--.|.|+.. .-+..+...+...++...|+.|
T Consensus 65 nemKwe~i~p~~-G-~f~Fe---~AD~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~--~e~~~~~~~~~~e~hI~tV~~r 137 (345)
T COG3693 65 NEMKWEAIEPER-G-RFNFE---AADAIANFARKHNMPLHGHTLVWHSQVPDWLFG--DELSKEALAKMVEEHIKTVVGR 137 (345)
T ss_pred cccccccccCCC-C-ccCcc---chHHHHHHHHHcCCeeccceeeecccCCchhhc--cccChHHHHHHHHHHHHHHHHh
Confidence 345799999976 8 89965 458999999999987543 2345578999864 2366778999999999999999
Q ss_pred hCCCcceEEEecCccc
Q 023712 174 FGDRVKNWITINEPLQ 189 (278)
Q Consensus 174 ~gd~V~~w~t~NEP~~ 189 (278)
|++.|..|-+.|||.-
T Consensus 138 Ykg~~~sWDVVNE~vd 153 (345)
T COG3693 138 YKGSVASWDVVNEAVD 153 (345)
T ss_pred ccCceeEEEecccccC
Confidence 9999999999999976
No 33
>PRK10150 beta-D-glucuronidase; Provisional
Probab=96.39 E-value=0.014 Score=59.37 Aligned_cols=94 Identities=20% Similarity=0.214 Sum_probs=65.2
Q ss_pred cCcHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHh-------
Q 023712 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHE------- 149 (278)
Q Consensus 77 ~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~------- 149 (278)
..+..|+++||++|+|++|+|- .| .+ ..+++.|=+.||-++.-+.-+....|...
T Consensus 313 ~~~~~d~~l~K~~G~N~vR~sh-----~p------~~-------~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~ 374 (604)
T PRK10150 313 VLNVHDHNLMKWIGANSFRTSH-----YP------YS-------EEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNK 374 (604)
T ss_pred HHHHHHHHHHHHCCCCEEEecc-----CC------CC-------HHHHHHHHhcCcEEEEeccccccccccccccccccc
Confidence 3468899999999999999952 22 22 34567788999988876543332222210
Q ss_pred hhCCCC----ChHHHHHHHHHHHHHHHHhCCC--cceEEEecCcc
Q 023712 150 SMGGWL----NKEIVKYFEIYADTCFASFGDR--VKNWITINEPL 188 (278)
Q Consensus 150 ~~ggw~----~~~~~~~F~~ya~~v~~~~gd~--V~~w~t~NEP~ 188 (278)
....|. +++..+.+.+-++.+++|++++ |-.|.+-||+.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~ 419 (604)
T PRK10150 375 PKETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPA 419 (604)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCC
Confidence 001222 3567788888899999999986 77899999974
No 34
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.30 E-value=0.028 Score=48.10 Aligned_cols=103 Identities=20% Similarity=0.367 Sum_probs=68.5
Q ss_pred cCcHHHHHHHHHcCCCeeeecccccccc-----cCCC--CCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHh
Q 023712 77 HRYKEDIDLIAKLGFDAYRFSISWSRIF-----PDGL--GTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHE 149 (278)
Q Consensus 77 ~~y~eDi~l~k~lG~~~~R~si~WsRi~-----P~~~--G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~ 149 (278)
.+|+++++.|+++|++++=+- |+... |..- + .+.....+.++.+++++.+.||++++.|+. -|.|..+
T Consensus 20 ~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~-~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~--~~~~w~~ 94 (166)
T PF14488_consen 20 AQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPG-GFYMPPVDLLEMILDAADKYGMKVFVGLYF--DPDYWDQ 94 (166)
T ss_pred HHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCc-cccCCcccHHHHHHHHHHHcCCEEEEeCCC--Cchhhhc
Confidence 468999999999999988432 44332 2210 1 122233478999999999999999999984 4566653
Q ss_pred hhCCCCChH-HHHHHHHHHHHHHHHhCCC--cceEEEecCccc
Q 023712 150 SMGGWLNKE-IVKYFEIYADTCFASFGDR--VKNWITINEPLQ 189 (278)
Q Consensus 150 ~~ggw~~~~-~~~~F~~ya~~v~~~~gd~--V~~w~t~NEP~~ 189 (278)
.+.+ -++.=..-++.+.++||.+ +..|-+-.|+.-
T Consensus 95 -----~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~ 132 (166)
T PF14488_consen 95 -----GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEIDD 132 (166)
T ss_pred -----cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccCC
Confidence 2221 2333344667788899885 555777777653
No 35
>PLN02905 beta-amylase
Probab=96.25 E-value=0.021 Score=57.75 Aligned_cols=100 Identities=11% Similarity=0.203 Sum_probs=77.9
Q ss_pred CcccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccC------------
Q 023712 74 DHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW------------ 141 (278)
Q Consensus 74 d~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~------------ 141 (278)
....-.+..+..+|.+|+..+-+.+-|--+|+.+++ .+|+ ..|+++++.+++.|++..+.|...
T Consensus 283 ~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~-~YdW---sgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~I 358 (702)
T PLN02905 283 ADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQ-EYNW---NGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVCI 358 (702)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCC-cCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccc
Confidence 445567888999999999999999999999998878 9997 569999999999999988777532
Q ss_pred CCchhhHhh--------h---CCCC----------------ChHHHHHHHHHHHHHHHHhCCC
Q 023712 142 DLPLHLHES--------M---GGWL----------------NKEIVKYFEIYADTCFASFGDR 177 (278)
Q Consensus 142 ~~P~wl~~~--------~---ggw~----------------~~~~~~~F~~ya~~v~~~~gd~ 177 (278)
.+|.|+.+. | .|.. .+..++.|.+|-+-...+|.+.
T Consensus 359 PLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 421 (702)
T PLN02905 359 PLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEF 421 (702)
T ss_pred cCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 599998752 0 1211 1234678888887777777654
No 36
>PLN02705 beta-amylase
Probab=96.23 E-value=0.018 Score=58.09 Aligned_cols=98 Identities=12% Similarity=0.166 Sum_probs=76.3
Q ss_pred ccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccC------------CC
Q 023712 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW------------DL 143 (278)
Q Consensus 76 y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~------------~~ 143 (278)
-.-.+..+..+|.+|++.+-+.+-|--+|+.+++ .+|| ..|+++++.+++.|++..+.|... .+
T Consensus 267 ~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~-~YdW---sgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPL 342 (681)
T PLN02705 267 PEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQ-KYVW---SGYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMISL 342 (681)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCC-cCCc---HHHHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccccC
Confidence 3457788999999999999999999999998778 9997 569999999999999987776532 59
Q ss_pred chhhHhh--------h---CCCC----------------ChHHHHHHHHHHHHHHHHhCCC
Q 023712 144 PLHLHES--------M---GGWL----------------NKEIVKYFEIYADTCFASFGDR 177 (278)
Q Consensus 144 P~wl~~~--------~---ggw~----------------~~~~~~~F~~ya~~v~~~~gd~ 177 (278)
|.|+.+. | .|.. .+.-++.|.+|.+-....|.+.
T Consensus 343 P~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 403 (681)
T PLN02705 343 PQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDL 403 (681)
T ss_pred CHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 9998752 0 1211 1234588888888777777664
No 37
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=94.75 E-value=0.11 Score=56.11 Aligned_cols=93 Identities=13% Similarity=0.016 Sum_probs=62.2
Q ss_pred ccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhCCCC
Q 023712 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWL 155 (278)
Q Consensus 76 y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~ 155 (278)
...+++||++||++|+|++|+| -.|. + .++.+.|=+.||-++--..-.....+.... ...
T Consensus 370 ~e~~~~di~lmK~~g~NaVR~s-----HyP~------~-------p~fydlcDe~GilV~dE~~~e~hg~~~~~~--~~~ 429 (1027)
T PRK09525 370 EETMVQDILLMKQHNFNAVRCS-----HYPN------H-------PLWYELCDRYGLYVVDEANIETHGMVPMNR--LSD 429 (1027)
T ss_pred HHHHHHHHHHHHHCCCCEEEec-----CCCC------C-------HHHHHHHHHcCCEEEEecCccccCCccccC--CCC
Confidence 4567899999999999999995 1221 2 233567778999888664211111000000 112
Q ss_pred ChHHHHHHHHHHHHHHHHhCCC--cceEEEecCcc
Q 023712 156 NKEIVKYFEIYADTCFASFGDR--VKNWITINEPL 188 (278)
Q Consensus 156 ~~~~~~~F~~ya~~v~~~~gd~--V~~w~t~NEP~ 188 (278)
+++..+.+.+=++.+++|.+++ |-.|.+.||+.
T Consensus 430 dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 430 DPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 4666777777788999999986 78899999974
No 38
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.67 E-value=0.2 Score=51.10 Aligned_cols=109 Identities=16% Similarity=0.150 Sum_probs=83.5
Q ss_pred cCcHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEee--------ccCCCchhhH
Q 023712 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL--------YHWDLPLHLH 148 (278)
Q Consensus 77 ~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL--------~H~~~P~wl~ 148 (278)
+.|++=|+.+|++|+|++-.=+-|.-.+|.+ | .+|.+|..=..+.|..+.+.|+-+++-+ .+-++|.||.
T Consensus 49 e~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~-g-~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~ 126 (649)
T KOG0496|consen 49 EMWPDLIKKAKAGGLNVIQTYVFWNLHEPSP-G-KYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLR 126 (649)
T ss_pred hhhHHHHHHHHhcCCceeeeeeecccccCCC-C-cccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhh
Confidence 4467779999999999999999999999997 8 8899987777788999999998766543 3678898887
Q ss_pred hhhCCC----CChHHHHHHHHHHHHHHHHhC-------CCcceEEEecCcc
Q 023712 149 ESMGGW----LNKEIVKYFEIYADTCFASFG-------DRVKNWITINEPL 188 (278)
Q Consensus 149 ~~~ggw----~~~~~~~~F~~ya~~v~~~~g-------d~V~~w~t~NEP~ 188 (278)
.. .|- .|+.+-.++.+|.+.++...+ +=|-.-++=||-.
T Consensus 127 ~~-pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 127 NV-PGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG 176 (649)
T ss_pred hC-CceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh
Confidence 65 442 267788888888888877332 2244455666644
No 39
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=93.65 E-value=0.27 Score=53.29 Aligned_cols=89 Identities=13% Similarity=0.156 Sum_probs=61.2
Q ss_pred ccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeec---c-CCCchhhHhhh
Q 023712 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY---H-WDLPLHLHESM 151 (278)
Q Consensus 76 y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~---H-~~~P~wl~~~~ 151 (278)
...+++|+++||++|+|++|+|. .|. + ..+.+.|=+.||-++--.. | |.... .+
T Consensus 354 ~e~~~~dl~lmK~~g~NavR~sH-----yP~------~-------~~fydlcDe~GllV~dE~~~e~~g~~~~~----~~ 411 (1021)
T PRK10340 354 MDRVEKDIQLMKQHNINSVRTAH-----YPN------D-------PRFYELCDIYGLFVMAETDVESHGFANVG----DI 411 (1021)
T ss_pred HHHHHHHHHHHHHCCCCEEEecC-----CCC------C-------HHHHHHHHHCCCEEEECCcccccCccccc----cc
Confidence 46788999999999999999962 332 2 2345677889998776541 1 11100 00
Q ss_pred CCC--CChHHHHHHHHHHHHHHHHhCCC--cceEEEecCc
Q 023712 152 GGW--LNKEIVKYFEIYADTCFASFGDR--VKNWITINEP 187 (278)
Q Consensus 152 ggw--~~~~~~~~F~~ya~~v~~~~gd~--V~~w~t~NEP 187 (278)
.+ ..+...+.|.+=++.+++|.+++ |-.|.+-||.
T Consensus 412 -~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~ 450 (1021)
T PRK10340 412 -SRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNES 450 (1021)
T ss_pred -ccccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 11 23445667777788999999986 7789999996
No 40
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=93.20 E-value=0.36 Score=50.93 Aligned_cols=90 Identities=16% Similarity=0.034 Sum_probs=63.1
Q ss_pred CCcccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhC
Q 023712 73 VDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMG 152 (278)
Q Consensus 73 ~d~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~g 152 (278)
+-.+..+.+|+++||++|+|++|.| = .++. .+..+.|-+.||-++=...... ++
T Consensus 317 ~~~~~~~~~dl~lmk~~n~N~vRts-----H-------yP~~------~~~ydLcDelGllV~~Ea~~~~--------~~ 370 (808)
T COG3250 317 VTDEDAMERDLKLMKEANMNSVRTS-----H-------YPNS------EEFYDLCDELGLLVIDEAMIET--------HG 370 (808)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEec-----C-------CCCC------HHHHHHHHHhCcEEEEecchhh--------cC
Confidence 3345569999999999999999998 2 2332 3445667788998886554311 13
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCC--cceEEEecCcc
Q 023712 153 GWLNKEIVKYFEIYADTCFASFGDR--VKNWITINEPL 188 (278)
Q Consensus 153 gw~~~~~~~~F~~ya~~v~~~~gd~--V~~w~t~NEP~ 188 (278)
....++..+...+=++++++|-+++ |-.|.+-||.+
T Consensus 371 ~~~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~ 408 (808)
T COG3250 371 MPDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESG 408 (808)
T ss_pred CCCCcchhHHHHHHHHHHHHhccCCCcEEEEecccccc
Confidence 3344555555666678889998875 88899999965
No 41
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=90.28 E-value=0.13 Score=50.75 Aligned_cols=109 Identities=16% Similarity=0.127 Sum_probs=77.8
Q ss_pred cHHHHHHHHHcCCCeeeecccc-cccccCCCCCCCChhH-HHHHHHHHHHHHhcCCccEEeec----cCCCchhhHhhhC
Q 023712 79 YKEDIDLIAKLGFDAYRFSISW-SRIFPDGLGTKINMEG-ITFYNNIIDALLQKGIQPYVTLY----HWDLPLHLHESMG 152 (278)
Q Consensus 79 y~eDi~l~k~lG~~~~R~si~W-sRi~P~~~G~~~n~~~-l~~y~~~i~~l~~~GI~pivtL~----H~~~P~wl~~~~g 152 (278)
.+.|++.++.+|++..|++|.= ...-.. .| ..|.+. +.+.+.+++.+...+|++++||. |+.--.|--.=.|
T Consensus 28 i~~dle~a~~vg~k~lR~fiLDgEdc~d~-~G-~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipwag 105 (587)
T COG3934 28 IKADLEPAGFVGVKDLRLFILDGEDCRDK-EG-YRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWAG 105 (587)
T ss_pred hhcccccccCccceeEEEEEecCcchhhh-hc-eecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeecCC
Confidence 3568899999999999999532 222222 36 667664 88999999999999999999986 3221111110001
Q ss_pred C------CCChHHHHHHHHHHHHHHHHhCCC--cceEEEecCccc
Q 023712 153 G------WLNKEIVKYFEIYADTCFASFGDR--VKNWITINEPLQ 189 (278)
Q Consensus 153 g------w~~~~~~~~F~~ya~~v~~~~gd~--V~~w~t~NEP~~ 189 (278)
+ ...+.....|.+|.+.+++.|+-. +..|..-|||-+
T Consensus 106 ~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 106 EQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLV 150 (587)
T ss_pred CCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccc
Confidence 1 234567788999999999999875 566999999776
No 42
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=89.91 E-value=1.8 Score=40.71 Aligned_cols=90 Identities=20% Similarity=0.244 Sum_probs=51.4
Q ss_pred CcHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhCCCCCh
Q 023712 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNK 157 (278)
Q Consensus 78 ~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~ 157 (278)
..+.|+.+|++||+|++|+= -|-|+. =.|+.+..|.++||-++++|.. |.---++...|.+
T Consensus 54 ~C~rDi~~l~~LgiNtIRVY----~vdp~~-----------nHd~CM~~~~~aGIYvi~Dl~~---p~~sI~r~~P~~s- 114 (314)
T PF03198_consen 54 ACKRDIPLLKELGINTIRVY----SVDPSK-----------NHDECMSAFADAGIYVILDLNT---PNGSINRSDPAPS- 114 (314)
T ss_dssp HHHHHHHHHHHHT-SEEEES-------TTS-------------HHHHHHHHHTT-EEEEES-B---TTBS--TTS-----
T ss_pred HHHHhHHHHHHcCCCEEEEE----EeCCCC-----------CHHHHHHHHHhCCCEEEEecCC---CCccccCCCCcCC-
Confidence 57899999999999999973 133332 3588899999999999999963 4211111111111
Q ss_pred HHHHHHHHHHHHHHHHhC--CCcceEEEecCc
Q 023712 158 EIVKYFEIYADTCFASFG--DRVKNWITINEP 187 (278)
Q Consensus 158 ~~~~~F~~ya~~v~~~~g--d~V~~w~t~NEP 187 (278)
=....|.+|... ++.|. +.+-.+..=||-
T Consensus 115 w~~~l~~~~~~v-id~fa~Y~N~LgFf~GNEV 145 (314)
T PF03198_consen 115 WNTDLLDRYFAV-IDAFAKYDNTLGFFAGNEV 145 (314)
T ss_dssp --HHHHHHHHHH-HHHHTT-TTEEEEEEEESS
T ss_pred CCHHHHHHHHHH-HHHhccCCceEEEEeccee
Confidence 124556666554 34444 346667777773
No 43
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=89.82 E-value=11 Score=35.49 Aligned_cols=174 Identities=18% Similarity=0.272 Sum_probs=98.9
Q ss_pred CCCCCceeeeeccc-cccccccCCCCCCCceeeeecccCCccccCCCCCccCCcccCcHHH-HHHHHHcCCCeeeecccc
Q 023712 23 DFPPNFVFGVATSA-YQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKED-IDLIAKLGFDAYRFSISW 100 (278)
Q Consensus 23 ~fp~~FlwG~atsa-~Q~EG~~~~~gk~~s~wD~~~~~~~~~~~~~~~~~a~d~y~~y~eD-i~l~k~lG~~~~R~si~W 100 (278)
..|+||+.|+-.|. +|+|-. ++ .|... +|. ++| ++.+|+.|+|.+|+-|-
T Consensus 34 ~~~~dFikGaDis~l~~lE~~---Gv-------kf~d~--------ng~---------~qD~~~iLK~~GvNyvRlRvw- 85 (403)
T COG3867 34 NSPNDFIKGADISSLIELENS---GV-------KFFDT--------NGV---------RQDALQILKNHGVNYVRLRVW- 85 (403)
T ss_pred CChHHhhccccHHHHHHHHHc---Cc-------eEEcc--------CCh---------HHHHHHHHHHcCcCeEEEEEe-
Confidence 47889998887654 566632 11 12211 221 345 69999999999999762
Q ss_pred cccccCC-CCC----CCChhHHHHHHHHHHHHHhcCCccEEeec---cCCCchhhHhhhCCCCCh---HHHHHHHHHHHH
Q 023712 101 SRIFPDG-LGT----KINMEGITFYNNIIDALLQKGIQPYVTLY---HWDLPLHLHESMGGWLNK---EIVKYFEIYADT 169 (278)
Q Consensus 101 sRi~P~~-~G~----~~n~~~l~~y~~~i~~l~~~GI~pivtL~---H~~~P~wl~~~~ggw~~~---~~~~~F~~ya~~ 169 (278)
.-|.. +|. .-| .++.--++-.++++.||+++++.| ||.=|.- +++-..|.+- ..-.+.-+|.+.
T Consensus 86 --ndP~dsngn~yggGnn--D~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPak-Q~kPkaW~~l~fe~lk~avy~yTk~ 160 (403)
T COG3867 86 --NDPYDSNGNGYGGGNN--DLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAK-QKKPKAWENLNFEQLKKAVYSYTKY 160 (403)
T ss_pred --cCCccCCCCccCCCcc--hHHHHHHHHHHHHhcCcEEEeeccchhhccChhh-cCCcHHhhhcCHHHHHHHHHHHHHH
Confidence 12221 110 223 256677888899999999999987 3444432 1222356542 233444456665
Q ss_pred HHHHh---CCCcceEEEecCcccccccCccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEcee
Q 023712 170 CFASF---GDRVKNWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVV 246 (278)
Q Consensus 170 v~~~~---gd~V~~w~t~NEP~~~~~~gy~~g~~~P~~~~~~~~~~~~~~h~~l~AHa~a~~~~r~~~~~~~~~~iGi~~ 246 (278)
+...+ |-..+.-++=||-+. |++ ||-|... . +.-+-.++.| +++++|+.. |..+|-+.+
T Consensus 161 ~l~~m~~eGi~pdmVQVGNEtn~----gfl---wp~Ge~~-~----f~k~a~L~n~---g~~avrev~---p~ikv~lHl 222 (403)
T COG3867 161 VLTTMKKEGILPDMVQVGNETNG----GFL---WPDGEGR-N----FDKMAALLNA---GIRAVREVS---PTIKVALHL 222 (403)
T ss_pred HHHHHHHcCCCccceEeccccCC----cee---ccCCCCc-C----hHHHHHHHHH---HhhhhhhcC---CCceEEEEe
Confidence 55555 445777789999763 222 5655432 1 2222334444 455566654 466666554
Q ss_pred c
Q 023712 247 D 247 (278)
Q Consensus 247 ~ 247 (278)
+
T Consensus 223 a 223 (403)
T COG3867 223 A 223 (403)
T ss_pred c
Confidence 3
No 44
>smart00642 Aamy Alpha-amylase domain.
Probab=89.79 E-value=0.8 Score=38.97 Aligned_cols=64 Identities=19% Similarity=0.285 Sum_probs=43.4
Q ss_pred ccCcHHHHHHHHHcCCCeeeeccccccccc--CCCC------CCCChh--HHHHHHHHHHHHHhcCCccEEeec
Q 023712 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFP--DGLG------TKINME--GITFYNNIIDALLQKGIQPYVTLY 139 (278)
Q Consensus 76 y~~y~eDi~l~k~lG~~~~R~si~WsRi~P--~~~G------~~~n~~--~l~~y~~~i~~l~~~GI~pivtL~ 139 (278)
+....+-++.+++||++++-++--+..... ...| ..+++. ..+-++++|++|+++||++++++.
T Consensus 18 ~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 18 LQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred HHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 455567788999999999998754443321 1001 012211 246689999999999999999873
No 45
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.03 E-value=3.4 Score=41.21 Aligned_cols=137 Identities=19% Similarity=0.314 Sum_probs=86.2
Q ss_pred ccCcHHHHHHHHHcCCCeeeec----ccccccccCC----------------------------CCCCCChh----HHHH
Q 023712 76 YHRYKEDIDLIAKLGFDAYRFS----ISWSRIFPDG----------------------------LGTKINME----GITF 119 (278)
Q Consensus 76 y~~y~eDi~l~k~lG~~~~R~s----i~WsRi~P~~----------------------------~G~~~n~~----~l~~ 119 (278)
|.+|+..|+-|+=.|+|..=-. +-|.+|+-.- .| ++.+. .+-.
T Consensus 77 w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgG-pLs~aw~~~ql~L 155 (666)
T KOG2233|consen 77 WEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGG-PLSPAWMLNQLLL 155 (666)
T ss_pred hHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCC-CCCHHHHHHHHHH
Confidence 6899999999999999965433 2355554321 02 23221 2334
Q ss_pred HHHHHHHHHhcCCccEEeeccCCCchhhHhhh--------CCCC------------C---hHHHHHHHHHHHHHHHHhCC
Q 023712 120 YNNIIDALLQKGIQPYVTLYHWDLPLHLHESM--------GGWL------------N---KEIVKYFEIYADTCFASFGD 176 (278)
Q Consensus 120 y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~--------ggw~------------~---~~~~~~F~~ya~~v~~~~gd 176 (278)
=.++|+++++-||+|++--+---.|..|..-+ +.|. + |-+.+-=..|-+...+.||+
T Consensus 156 qkrIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~ 235 (666)
T KOG2233|consen 156 QKRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGG 235 (666)
T ss_pred HHHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCC
Confidence 57899999999999999888777888876532 2232 1 23344445566677899996
Q ss_pred CcceE--EEecCcccccccCccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhc
Q 023712 177 RVKNW--ITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYK 235 (278)
Q Consensus 177 ~V~~w--~t~NEP~~~~~~gy~~g~~~P~~~~~~~~~~~~~~h~~l~AHa~a~~~~r~~~~ 235 (278)
.-..+ -||||.. ||-. ..+ .+--+.+.+|+.+++.++
T Consensus 236 ~tniy~~DpFNE~~------------Pp~s----epe------y~~staaAiyesm~kvdk 274 (666)
T KOG2233|consen 236 VTNIYSADPFNEIL------------PPES----EPE------YVKSTAAAIYESMKKVDK 274 (666)
T ss_pred cccccccCcccccC------------CCCC----ChH------HHHHHHHHHHHHHhccCc
Confidence 32223 3899853 5542 122 233345667888888754
No 46
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=88.15 E-value=1 Score=43.76 Aligned_cols=100 Identities=16% Similarity=0.186 Sum_probs=69.8
Q ss_pred HHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhCCCC--ChHHHHH
Q 023712 85 LIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWL--NKEIVKY 162 (278)
Q Consensus 85 l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~--~~~~~~~ 162 (278)
.-+|+|++-+|.---|.-++-.. -++ ..++|+++|.+...|+.-+.+-.||+.+.-....|.+-. .....+.
T Consensus 13 ~~~Ei~v~yi~~~~v~h~~~q~~---~~~---~t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl 86 (428)
T COG3664 13 TDDEIQVNYIRRHGVWHVNAQKL---FYP---FTYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDL 86 (428)
T ss_pred hhhhhceeeehhcceeeeeeccc---cCC---hHHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHH
Confidence 34688999998888888333222 455 379999999999999544445556666654443232322 2347899
Q ss_pred HHHHHHHHHHHhCCC-cc--eEEEecCcccc
Q 023712 163 FEIYADTCFASFGDR-VK--NWITINEPLQT 190 (278)
Q Consensus 163 F~~ya~~v~~~~gd~-V~--~w~t~NEP~~~ 190 (278)
++.++.-|+.+||-+ |. ....+||||..
T Consensus 87 ~~~fl~h~~~~vg~e~v~kw~f~~~~~pn~~ 117 (428)
T COG3664 87 IAAFLKHVIRRVGVEFVRKWPFYSPNEPNLL 117 (428)
T ss_pred HHHHHHHHHHHhChhheeecceeecCCCCcc
Confidence 999999999999964 33 35699999986
No 47
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=88.14 E-value=11 Score=35.57 Aligned_cols=156 Identities=21% Similarity=0.383 Sum_probs=85.2
Q ss_pred ccCcHHHHHHHHHcCCCeeeec-c--cccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhC
Q 023712 76 YHRYKEDIDLIAKLGFDAYRFS-I--SWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMG 152 (278)
Q Consensus 76 y~~y~eDi~l~k~lG~~~~R~s-i--~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~g 152 (278)
..||.+--++++++|+|.+-+. + .-.. +..+-++.+.++-+.++.+||++.+++. |..|.-+ |
T Consensus 56 ~~R~~~YARllASiGINgvvlNNVNa~~~~---------Lt~~~l~~v~~lAdvfRpYGIkv~LSvn-FasP~~l----g 121 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNNVNANPKL---------LTPEYLDKVARLADVFRPYGIKVYLSVN-FASPIEL----G 121 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-SS--CGG---------GSTTTHHHHHHHHHHHHHTT-EEEEEE--TTHHHHT----T
T ss_pred hhHHHHHHHHHhhcCCceEEecccccChhh---------cCHHHHHHHHHHHHHHhhcCCEEEEEee-ccCCccc----C
Confidence 4678888999999999998765 2 2222 2233367788999999999999999997 6778654 5
Q ss_pred CC-----CChHHHHHHHHHHHHHHHHhCCCcceEEEecCcccccccCcccc---ccCCCCCCCCCchHHHHHHHHHHHHH
Q 023712 153 GW-----LNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTG---IFAPGRHQHSSTEPYLVAHHQILAHA 224 (278)
Q Consensus 153 gw-----~~~~~~~~F~~ya~~v~~~~gd~V~~w~t~NEP~~~~~~gy~~g---~~~P~~~~~~~~~~~~~~h~~l~AHa 224 (278)
|- .++++...+.+=++.+.++.-|- .||+.- ..-||.. . | + +.||
T Consensus 122 gL~TaDPld~~V~~WW~~k~~eIY~~IPDf---------------gGflVKAdSEGqPGP~--~----Y----g--RthA 174 (328)
T PF07488_consen 122 GLPTADPLDPEVRQWWKDKADEIYSAIPDF---------------GGFLVKADSEGQPGPF--T----Y----G--RTHA 174 (328)
T ss_dssp S-S---TTSHHHHHHHHHHHHHHHHH-TT-----------------EEEE--SBTTB--GG--G----G----T----HH
T ss_pred CcCcCCCCCHHHHHHHHHHHHHHHHhCCCc---------------cceEEEecCCCCCCCc--c----c----C--CCch
Confidence 53 57889999999999988887552 233211 1124321 1 1 0 3355
Q ss_pred HHHHHHHHHhcCCCCCeEEceecCceeeeC----CCCcccchh-hHhhHHhhccccc
Q 023712 225 AAFSVYQRKYKDKQGGNIGLVVDCEWAEAR----SSVRRQHPN-GFMLFHGAFGRFL 276 (278)
Q Consensus 225 ~a~~~~r~~~~~~~~~~iGi~~~~~~~~p~----~~~~~d~~~-~~~~f~~~~g~~~ 276 (278)
...+.+-+..+ |.+ |+++=-..+|-- .+...|+++ .+-.|..+=|+|.
T Consensus 175 dGANmlA~Al~--P~G--G~V~wRaFVY~~~~dw~d~~~DRakaAy~~F~pLDG~F~ 227 (328)
T PF07488_consen 175 DGANMLARALK--PHG--GIVIWRAFVYNCHQDWRDRKTDRAKAAYDEFKPLDGQFD 227 (328)
T ss_dssp HHHHHHHHHHG--GGT---EEEEE-----TT--TTTTTS-GGGHHHHHHGGGTT-S-
T ss_pred hhHHHHHHHhh--ccC--CEEEEEeEeeccccccccccccHHHHHHhhccCCCCCcc
Confidence 55544444321 344 566655556652 123345555 4558888888874
No 48
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=83.51 E-value=1.7 Score=38.85 Aligned_cols=58 Identities=21% Similarity=0.445 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCC-CC------CCCChh--HHHHHHHHHHHHHhcCCccEEeec
Q 023712 80 KEDIDLIAKLGFDAYRFSISWSRIFPDG-LG------TKINME--GITFYNNIIDALLQKGIQPYVTLY 139 (278)
Q Consensus 80 ~eDi~l~k~lG~~~~R~si~WsRi~P~~-~G------~~~n~~--~l~~y~~~i~~l~~~GI~pivtL~ 139 (278)
.+-++.+++||++++-++=-+. .|.. .| ..+|++ ..+=++++|++|+++||++|+++.
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~--~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFE--SPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EE--SSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccc--cccccccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 4568899999999999884333 1111 11 012222 356789999999999999999864
No 49
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=81.71 E-value=5 Score=39.47 Aligned_cols=128 Identities=13% Similarity=0.096 Sum_probs=72.6
Q ss_pred cHHHHHHHHHcCCCeeeecc-ccc-ccccCCCCCCCChhHHHHHHHHHHHHHhcC-CccEEeeccCCCchhhHhhhCCCC
Q 023712 79 YKEDIDLIAKLGFDAYRFSI-SWS-RIFPDGLGTKINMEGITFYNNIIDALLQKG-IQPYVTLYHWDLPLHLHESMGGWL 155 (278)
Q Consensus 79 y~eDi~l~k~lG~~~~R~si-~Ws-Ri~P~~~G~~~n~~~l~~y~~~i~~l~~~G-I~pivtL~H~~~P~wl~~~~ggw~ 155 (278)
-+|.+++|+++|+|.+-+++ |-+ .+...- |...+ .+-..+.|+.+++.| +.+.++|. +++|. .
T Consensus 162 t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~l-gR~~~---~~~~~~~i~~l~~~g~~~v~~DlI-~GlPg---------q 227 (449)
T PRK09058 162 DDEKADAALDAGANRFSIGVQSFNTQVRRRA-GRKDD---REEVLARLEELVARDRAAVVCDLI-FGLPG---------Q 227 (449)
T ss_pred CHHHHHHHHHcCCCEEEecCCcCCHHHHHHh-CCCCC---HHHHHHHHHHHHhCCCCcEEEEEE-eeCCC---------C
Confidence 36889999999999888877 332 222221 31223 245677899999999 66777775 56662 2
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCcceEEEecCcccccccCccccccCCCCCCCCCchHHHHHHHHHHHH
Q 023712 156 NKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAH 223 (278)
Q Consensus 156 ~~~~~~~F~~ya~~v~~~~gd~V~~w~t~NEP~~~~~~gy~~g~~~P~~~~~~~~~~~~~~h~~l~AH 223 (278)
+ .+.+.+=.+.+.+-=-+.|..+...-+|.......+..|.+++-.......++|+.+...|.++
T Consensus 228 T---~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~ 292 (449)
T PRK09058 228 T---PEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLAKA 292 (449)
T ss_pred C---HHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHC
Confidence 2 3333333444333223678888888888875433344455543201112234555555555544
No 50
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=80.54 E-value=13 Score=36.91 Aligned_cols=88 Identities=19% Similarity=0.372 Sum_probs=59.7
Q ss_pred cHHH-HHHHHHcCCCeeeec-------------------------ccccccccCCCCCCCChhHHHHHHHHHHHHHhcCC
Q 023712 79 YKED-IDLIAKLGFDAYRFS-------------------------ISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGI 132 (278)
Q Consensus 79 y~eD-i~l~k~lG~~~~R~s-------------------------i~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI 132 (278)
++.| ++++|+|.+..+|+. +.|...|+.+.| .+++++.|...|.
T Consensus 50 ~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~G----------t~EF~~~~e~iGa 119 (501)
T COG3534 50 FRKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFG----------THEFMDWCELIGA 119 (501)
T ss_pred hHHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhccccccccccccc----------HHHHHHHHHHhCC
Confidence 4566 699999999999853 333322222212 4789999999999
Q ss_pred ccEEeeccCCCchhhHhhhCCCCChHHHHHHHHHHH--------HHHHHhCC----CcceEEEecCcc
Q 023712 133 QPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYAD--------TCFASFGD----RVKNWITINEPL 188 (278)
Q Consensus 133 ~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~--------~v~~~~gd----~V~~w~t~NEP~ 188 (278)
+|++.++= | =...+....|.+||. .+-+..|. .|++|.+=||..
T Consensus 120 ep~~avN~-----------G-srgvd~ar~~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm~ 175 (501)
T COG3534 120 EPYIAVNL-----------G-SRGVDEARNWVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEMD 175 (501)
T ss_pred ceEEEEec-----------C-CccHHHHHHHHHHccCCCCChhHHHHHhcCCCCCcccceEEeccccC
Confidence 99999962 2 133455677777763 23345554 499999999974
No 51
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=80.35 E-value=8.6 Score=36.03 Aligned_cols=99 Identities=19% Similarity=0.277 Sum_probs=64.1
Q ss_pred cCcHHHHHHHHHcCCCeeeecccc-------cccccCC---CCCCCChhHHHHHHHHHHHHHhcCCccEEee-cc-----
Q 023712 77 HRYKEDIDLIAKLGFDAYRFSISW-------SRIFPDG---LGTKINMEGITFYNNIIDALLQKGIQPYVTL-YH----- 140 (278)
Q Consensus 77 ~~y~eDi~l~k~lG~~~~R~si~W-------sRi~P~~---~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL-~H----- 140 (278)
...++-++.++++|+|++=+.+.+ |.++|.. .|......+.+.+..+|++++++||++..-+ ..
T Consensus 19 ~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~~ 98 (311)
T PF02638_consen 19 EQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNAPD 98 (311)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCCCc
Confidence 345677899999999987654432 3333321 0101111256789999999999999987544 11
Q ss_pred -----CCCchhhHhh-------h----CC--CC---ChHHHHHHHHHHHHHHHHhC
Q 023712 141 -----WDLPLHLHES-------M----GG--WL---NKEIVKYFEIYADTCFASFG 175 (278)
Q Consensus 141 -----~~~P~wl~~~-------~----gg--w~---~~~~~~~F~~ya~~v~~~~g 175 (278)
-..|.|+..+ + ++ |. +|++.+...+-++.|+++|.
T Consensus 99 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 99 VSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred hhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 1246665421 1 22 44 57889999999999999995
No 52
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=80.02 E-value=10 Score=35.15 Aligned_cols=105 Identities=16% Similarity=0.149 Sum_probs=69.7
Q ss_pred HHHHHHHHHcCC--CeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCC---chhh-------
Q 023712 80 KEDIDLIAKLGF--DAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL---PLHL------- 147 (278)
Q Consensus 80 ~eDi~l~k~lG~--~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~---P~wl------- 147 (278)
.+-++.+++.|+ +++=+++.|..-. ++= .+|.+.+---.+++++|+++|+++++.+.=+-. +..-
T Consensus 33 ~~~~~~~~~~~iP~d~i~iD~~w~~~~--g~f-~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g~ 109 (303)
T cd06592 33 LNYAQEIIDNGFPNGQIEIDDNWETCY--GDF-DFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKGY 109 (303)
T ss_pred HHHHHHHHHcCCCCCeEEeCCCccccC--Ccc-ccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCCe
Confidence 455788888885 5777777786432 211 455555555789999999999998887653211 1111
Q ss_pred --HhhhC----------------CCCChHHHHHHHHHHHHHHHHhCCCcceEEEecCcc
Q 023712 148 --HESMG----------------GWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPL 188 (278)
Q Consensus 148 --~~~~g----------------gw~~~~~~~~F~~ya~~v~~~~gd~V~~w~t~NEP~ 188 (278)
.+..| .+.||++.+.+.+..+.+....| ---.|+=+|||.
T Consensus 110 ~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G-vdg~w~D~~E~~ 167 (303)
T cd06592 110 LVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYG-IDSFKFDAGEAS 167 (303)
T ss_pred EEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhC-CcEEEeCCCCcc
Confidence 00001 15689999999998888887775 233478899997
No 53
>PLN02361 alpha-amylase
Probab=79.67 E-value=3.3 Score=40.34 Aligned_cols=67 Identities=15% Similarity=0.293 Sum_probs=47.0
Q ss_pred CcccCcHHHHHHHHHcCCCeeeecccccccccCCCC----CCCChh--HHHHHHHHHHHHHhcCCccEEee--cc
Q 023712 74 DHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLG----TKINME--GITFYNNIIDALLQKGIQPYVTL--YH 140 (278)
Q Consensus 74 d~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G----~~~n~~--~l~~y~~~i~~l~~~GI~pivtL--~H 140 (278)
.+|....+-++.+++||++++-++=...-.-+.|-. ..+|.. ..+=++++|++|+++||++|+++ +|
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH 100 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINH 100 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEcccc
Confidence 478888999999999999999887544333332211 012211 23468999999999999999964 45
No 54
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=79.56 E-value=6.4 Score=32.32 Aligned_cols=55 Identities=11% Similarity=0.272 Sum_probs=38.7
Q ss_pred HHHHHHHHcCCCeeeeccc----ccccccCCCC---CCCChhHHHHHHHHHHHHHhcCCccEEeec
Q 023712 81 EDIDLIAKLGFDAYRFSIS----WSRIFPDGLG---TKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (278)
Q Consensus 81 eDi~l~k~lG~~~~R~si~----WsRi~P~~~G---~~~n~~~l~~y~~~i~~l~~~GI~pivtL~ 139 (278)
+=++.+|++|++++-+... |+ ..|+..| +.+. -+.+.++|+.|+++||++++-+.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~a-yYPt~~~~~hp~L~---~Dllge~v~a~h~~Girv~ay~~ 65 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYA-YYPTKVGPRHPGLK---RDLLGEQVEACHERGIRVPAYFD 65 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEE-EccCCCCcCCCCCC---cCHHHHHHHHHHHCCCEEEEEEe
Confidence 4478999999999998332 21 2333322 0233 37899999999999999998664
No 55
>PLN00196 alpha-amylase; Provisional
Probab=79.45 E-value=2.9 Score=41.09 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=44.2
Q ss_pred cccCcHHHHHHHHHcCCCeeeecccccccccCCCC----CCCCh-h--HHHHHHHHHHHHHhcCCccEEee
Q 023712 75 HYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLG----TKINM-E--GITFYNNIIDALLQKGIQPYVTL 138 (278)
Q Consensus 75 ~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G----~~~n~-~--~l~~y~~~i~~l~~~GI~pivtL 138 (278)
.|....+.++.+++||++++=++=......+.|-. ..+|+ . .-+=++++|++++++||++|+++
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 46667888999999999999998544333222211 01221 0 12458999999999999999974
No 56
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=79.43 E-value=6.6 Score=35.23 Aligned_cols=78 Identities=19% Similarity=0.376 Sum_probs=51.8
Q ss_pred CCcccCcHHHHHHHHHcCCCeeee----------------------cccccccccCCCCCCCChhHHHHHHHHHHHHHhc
Q 023712 73 VDHYHRYKEDIDLIAKLGFDAYRF----------------------SISWSRIFPDGLGTKINMEGITFYNNIIDALLQK 130 (278)
Q Consensus 73 ~d~y~~y~eDi~l~k~lG~~~~R~----------------------si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~ 130 (278)
.+---.-+.-|+++++||.+++.| ++ | +||+| | +| ++.+.+++..+++.
T Consensus 131 ~~~iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~-~--lEPTG-G--Id---l~Nf~~I~~i~lda 201 (236)
T TIGR03581 131 KEAIVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF-Y--LEPTG-G--ID---LDNFEEIVQIALDA 201 (236)
T ss_pred CCceeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC-c--cCCCC-C--cc---HHhHHHHHHHHHHc
Confidence 334455677899999999998874 33 3 68876 4 77 57889999999999
Q ss_pred CCccEEeeccCCCchhhHhhhCCCCChHHHHHH
Q 023712 131 GIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYF 163 (278)
Q Consensus 131 GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F 163 (278)
|++-++ .|- +-.-+ ++--|-+.++.+...
T Consensus 202 Gv~kvi--PHI-YssiI-Dk~tG~TrpedV~~l 230 (236)
T TIGR03581 202 GVEKVI--PHV-YSSII-DKETGNTRVEDVKQL 230 (236)
T ss_pred CCCeec--ccc-ceecc-ccccCCCCHHHHHHH
Confidence 998663 221 11112 232566676655443
No 57
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=79.18 E-value=4.6 Score=38.48 Aligned_cols=123 Identities=14% Similarity=0.192 Sum_probs=67.9
Q ss_pred cHHHHHHHHHcCCCeeeecccccccccCC---CCCCCChhHHHHHHHHHHHHHhcCCccE-EeeccCCCchhhHhhhCCC
Q 023712 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG---LGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLHLHESMGGW 154 (278)
Q Consensus 79 y~eDi~l~k~lG~~~~R~si~WsRi~P~~---~G~~~n~~~l~~y~~~i~~l~~~GI~pi-vtL~H~~~P~wl~~~~ggw 154 (278)
-++.++.|+++|++.+-+++ ..+-++- -|...+ .+-+.+.|+.+++.|+..+ +++. +++|.
T Consensus 98 t~e~l~~l~~~G~~rvsiGv--qS~~d~~L~~l~R~~~---~~~~~~ai~~l~~~g~~~v~~dli-~GlPg--------- 162 (374)
T PRK05799 98 TEEKLKILKSMGVNRLSIGL--QAWQNSLLKYLGRIHT---FEEFLENYKLARKLGFNNINVDLM-FGLPN--------- 162 (374)
T ss_pred CHHHHHHHHHcCCCEEEEEC--ccCCHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCcEEEEee-cCCCC---------
Confidence 35889999999999555554 3333321 131123 4567889999999999744 5553 45552
Q ss_pred CChHHHHHHHHHHHHHHHHhC-CCcceEEEecCcccccccCccccccC-CCCCCCCCchHHHHHHHHHHH
Q 023712 155 LNKEIVKYFEIYADTCFASFG-DRVKNWITINEPLQTAVNGYCTGIFA-PGRHQHSSTEPYLVAHHQILA 222 (278)
Q Consensus 155 ~~~~~~~~F~~ya~~v~~~~g-d~V~~w~t~NEP~~~~~~gy~~g~~~-P~~~~~~~~~~~~~~h~~l~A 222 (278)
.+ .+.|.+-.+.+.+ ++ +.|..+...-+|+.....-+..|.+. |... .....+..+...+.+
T Consensus 163 qt---~e~~~~~l~~~~~-l~~~~is~y~l~~~pgT~l~~~~~~g~~~~~~~~--~~~~~~~~~~~~l~~ 226 (374)
T PRK05799 163 QT---LEDWKETLEKVVE-LNPEHISCYSLIIEEGTPFYNLYENGKLKLPDEE--EEREMYHYTIEFLKE 226 (374)
T ss_pred CC---HHHHHHHHHHHHh-cCCCEEEEeccEecCCCHHHHHHhcCCCCCCChH--HHHHHHHHHHHHHHH
Confidence 23 4445555555443 44 55666665568875433223334333 3221 123445555555554
No 58
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=76.82 E-value=9 Score=36.47 Aligned_cols=110 Identities=19% Similarity=0.381 Sum_probs=59.4
Q ss_pred ccCcHHHHHHHHHcCCCeeeecc----cccccccCC----------------------------CCCCCC----hhHHHH
Q 023712 76 YHRYKEDIDLIAKLGFDAYRFSI----SWSRIFPDG----------------------------LGTKIN----MEGITF 119 (278)
Q Consensus 76 y~~y~eDi~l~k~lG~~~~R~si----~WsRi~P~~----------------------------~G~~~n----~~~l~~ 119 (278)
|.||++.|+.|+=-|+|..=--+ -|.|++-+- .| ++. .+-.+.
T Consensus 18 W~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgG-PLp~~w~~~q~~L 96 (333)
T PF05089_consen 18 WERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGG-PLPQSWIDQQAEL 96 (333)
T ss_dssp HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT-----TTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCC-CCCHHHHHHHHHH
Confidence 57899999999999998542111 133332221 02 222 233566
Q ss_pred HHHHHHHHHhcCCccEEeeccCCCchhhHhhh--------CCC--------CChHHHHHHHHHHH----HHHHHhCCCcc
Q 023712 120 YNNIIDALLQKGIQPYVTLYHWDLPLHLHESM--------GGW--------LNKEIVKYFEIYAD----TCFASFGDRVK 179 (278)
Q Consensus 120 y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~--------ggw--------~~~~~~~~F~~ya~----~v~~~~gd~V~ 179 (278)
=+++++++++.||+|++--+---.|..+.+++ +.| +.| .-+.|.+.++ ..-+.|| .-.
T Consensus 97 q~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P-~dplF~~i~~~F~~~q~~~yG-~~~ 174 (333)
T PF05089_consen 97 QKKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDP-TDPLFAEIAKLFYEEQIKLYG-TDH 174 (333)
T ss_dssp HHHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTEE--EEE-S-S--HHHHHHHHHHHHHHHHH----S
T ss_pred HHHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCC-CCchHHHHHHHHHHHHHHhcC-CCc
Confidence 78999999999999999888777898888776 223 222 3456666664 4557788 444
Q ss_pred eEE--EecCcc
Q 023712 180 NWI--TINEPL 188 (278)
Q Consensus 180 ~w~--t~NEP~ 188 (278)
++. +|||-.
T Consensus 175 ~Y~~D~FnE~~ 185 (333)
T PF05089_consen 175 IYAADPFNEGG 185 (333)
T ss_dssp EEE--TTTTS-
T ss_pred eeCCCccCCCC
Confidence 444 788843
No 59
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=76.56 E-value=7.6 Score=35.87 Aligned_cols=66 Identities=18% Similarity=0.194 Sum_probs=51.4
Q ss_pred CcHHHHHHHHHcCCCeeeecccccccccCC-CCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCc
Q 023712 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (278)
Q Consensus 78 ~y~eDi~l~k~lG~~~~R~si~WsRi~P~~-~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P 144 (278)
+-+.|++.+++.|++.+++.++=|...-.. .+ .--.+.++...+++..+++.|+++.+++-+|+.|
T Consensus 75 ~~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~-~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~ 141 (280)
T cd07945 75 DGDKSVDWIKSAGAKVLNLLTKGSLKHCTEQLR-KTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNG 141 (280)
T ss_pred CcHHHHHHHHHCCCCEEEEEEeCCHHHHHHHHC-cCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCC
Confidence 346799999999999999998655444332 13 2335678999999999999999999999887644
No 60
>PRK12313 glycogen branching enzyme; Provisional
Probab=75.11 E-value=14 Score=38.07 Aligned_cols=92 Identities=17% Similarity=0.297 Sum_probs=58.0
Q ss_pred cCcHHH-HHHHHHcCCCeeeec-c-------cc-------cccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEee--
Q 023712 77 HRYKED-IDLIAKLGFDAYRFS-I-------SW-------SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL-- 138 (278)
Q Consensus 77 ~~y~eD-i~l~k~lG~~~~R~s-i-------~W-------sRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL-- 138 (278)
.-..+. ++.+|+||++++=+. | +| -.|.|.- | ..+=++++|++|+++||++|+++
T Consensus 170 ~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~-G------t~~d~k~lv~~~H~~Gi~VilD~V~ 242 (633)
T PRK12313 170 RELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRY-G------TPEDFMYLVDALHQNGIGVILDWVP 242 (633)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCC-C------CHHHHHHHHHHHHHCCCEEEEEECC
Confidence 334456 499999999999865 2 12 1122211 3 23458999999999999999984
Q ss_pred ccCCCch----hhH--------h---h-hCCC-------CChHHHHHHHHHHHHHHHHhC
Q 023712 139 YHWDLPL----HLH--------E---S-MGGW-------LNKEIVKYFEIYADTCFASFG 175 (278)
Q Consensus 139 ~H~~~P~----wl~--------~---~-~ggw-------~~~~~~~~F~~ya~~v~~~~g 175 (278)
.|..... ++. + . +.+| .++++.+.+.+-++.-+++|+
T Consensus 243 nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~ 302 (633)
T PRK12313 243 GHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH 302 (633)
T ss_pred CCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 4543111 110 0 0 0123 367888888888888888876
No 61
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=73.96 E-value=16 Score=33.86 Aligned_cols=102 Identities=17% Similarity=0.135 Sum_probs=63.6
Q ss_pred cCCcccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCC------Cch
Q 023712 72 AVDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWD------LPL 145 (278)
Q Consensus 72 a~d~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~------~P~ 145 (278)
..--+..+++-|+..+++|+..+=+.--|+.-.+...........-....++++..+++|+.+++-.++-+ +=.
T Consensus 27 ~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~ 106 (273)
T PF10566_consen 27 HGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEK 106 (273)
T ss_dssp BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHH
Confidence 34457889999999999999999999999973322110000111114578999999999999999998754 111
Q ss_pred hhHh---hh---C------CC---CChHHHHHHHHHHHHHHHH
Q 023712 146 HLHE---SM---G------GW---LNKEIVKYFEIYADTCFAS 173 (278)
Q Consensus 146 wl~~---~~---g------gw---~~~~~~~~F~~ya~~v~~~ 173 (278)
-+.+ .| | |+ .+...++.+.+.++.++++
T Consensus 107 ~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 107 QLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp CHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 1111 11 1 12 3566788888888887754
No 62
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=73.91 E-value=6.3 Score=41.16 Aligned_cols=57 Identities=23% Similarity=0.345 Sum_probs=39.7
Q ss_pred HHHHHHcCCCeeee----cccccccccCC-C----C------------CCCCh---hHHHHHHHHHHHHHhcCCccEEee
Q 023712 83 IDLIAKLGFDAYRF----SISWSRIFPDG-L----G------------TKINM---EGITFYNNIIDALLQKGIQPYVTL 138 (278)
Q Consensus 83 i~l~k~lG~~~~R~----si~WsRi~P~~-~----G------------~~~n~---~~l~~y~~~i~~l~~~GI~pivtL 138 (278)
|+-+|+||++++.+ ++...+-.+.. . | ...++ ..+.=++++|++|+++||++|+++
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 99999999999994 33343333211 0 1 01122 257789999999999999999975
Q ss_pred c
Q 023712 139 Y 139 (278)
Q Consensus 139 ~ 139 (278)
.
T Consensus 286 V 286 (697)
T COG1523 286 V 286 (697)
T ss_pred e
Confidence 3
No 63
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=73.90 E-value=1.7 Score=32.75 Aligned_cols=19 Identities=37% Similarity=0.613 Sum_probs=13.8
Q ss_pred HHHHhCC--CcceEEEecC-cc
Q 023712 170 CFASFGD--RVKNWITINE-PL 188 (278)
Q Consensus 170 v~~~~gd--~V~~w~t~NE-P~ 188 (278)
++++||+ +|.+|.++|| |+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~ 22 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPN 22 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-
T ss_pred CchhhcCCCCEEEEEeecCCCC
Confidence 4567776 6999999999 66
No 64
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=72.85 E-value=21 Score=33.46 Aligned_cols=108 Identities=16% Similarity=0.182 Sum_probs=68.7
Q ss_pred HHHHHHHHHcCCC-eeeeccc--ccccc-cC-CCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhCCC
Q 023712 80 KEDIDLIAKLGFD-AYRFSIS--WSRIF-PD-GLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGW 154 (278)
Q Consensus 80 ~eDi~l~k~lG~~-~~R~si~--WsRi~-P~-~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw 154 (278)
++.+++|+++|++ .+=++++ =.++. .. ..| .+ .+-+.+.++.++++||.+.+.+. +++|. .
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg--~t---~~~~~~ai~~~~~~Gi~v~~~~i-~G~P~--------~ 182 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINKG--ST---FEDFIRAAELARKYGAGVKAYLL-FKPPF--------L 182 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCC--CC---HHHHHHHHHHHHHcCCcEEEEEE-ecCCC--------C
Confidence 6889999999988 4666652 12222 11 112 33 45678999999999999777664 34441 1
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCcceEEEecCcccccccCccccccCC
Q 023712 155 LNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIFAP 202 (278)
Q Consensus 155 ~~~~~~~~F~~ya~~v~~~~gd~V~~w~t~NEP~~~~~~gy~~g~~~P 202 (278)
...++++.+.+.++.+.. +++.|....+.=+|+.....-|..|.|.|
T Consensus 183 se~ea~ed~~~ti~~~~~-l~~~vs~~~l~v~~gT~l~~~~~~G~~~p 229 (313)
T TIGR01210 183 SEKEAIADMISSIRKCIP-VTDTVSINPTNVQKGTLVEFLWNRGLYRP 229 (313)
T ss_pred ChhhhHHHHHHHHHHHHh-cCCcEEEECCEEeCCCHHHHHHHcCCCCC
Confidence 223567777777777664 45777776666577654444455666655
No 65
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=71.63 E-value=18 Score=33.72 Aligned_cols=84 Identities=13% Similarity=0.057 Sum_probs=47.4
Q ss_pred HHHHHcCCCeeeeccc--ccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhCCCCChHHHH
Q 023712 84 DLIAKLGFDAYRFSIS--WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVK 161 (278)
Q Consensus 84 ~l~k~lG~~~~R~si~--WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~ 161 (278)
+.+++.|++++-+++- -..-.|.-.| .............|..|+++|++++|.+=-+.-.... .+...++
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~g-~~~~~~~~~~~~~i~~lk~~G~kViiS~GG~~g~~~~-------~~~~~~~ 90 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWGG-SYPLDQGGWIKSDIAALRAAGGDVIVSFGGASGTPLA-------TSCTSAD 90 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCCC-CCCcccchhHHHHHHHHHHcCCeEEEEecCCCCCccc-------cCcccHH
Confidence 6788899999988853 1222222111 1110012355778999999999999998543321100 1234455
Q ss_pred HHHHHHHHHHHHhC
Q 023712 162 YFEIYADTCFASFG 175 (278)
Q Consensus 162 ~F~~ya~~v~~~~g 175 (278)
.|++....+.++|+
T Consensus 91 ~~~~a~~~~i~~y~ 104 (294)
T cd06543 91 QLAAAYQKVIDAYG 104 (294)
T ss_pred HHHHHHHHHHHHhC
Confidence 55555555666665
No 66
>PRK05402 glycogen branching enzyme; Provisional
Probab=71.29 E-value=27 Score=36.59 Aligned_cols=89 Identities=19% Similarity=0.281 Sum_probs=56.5
Q ss_pred HHH-HHHHHHcCCCeeeeccc--------cc-------ccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEee--ccC
Q 023712 80 KED-IDLIAKLGFDAYRFSIS--------WS-------RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL--YHW 141 (278)
Q Consensus 80 ~eD-i~l~k~lG~~~~R~si~--------Ws-------Ri~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL--~H~ 141 (278)
.+. ++.+|+||++++=+.=- |- .|.|.- | ..+=++++|++|+++||++|+++ .|+
T Consensus 268 ~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~-G------t~~dfk~lV~~~H~~Gi~VilD~V~NH~ 340 (726)
T PRK05402 268 ADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRF-G------TPDDFRYFVDACHQAGIGVILDWVPAHF 340 (726)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCccc-C------CHHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence 345 38889999999977621 21 122211 2 23458999999999999999985 454
Q ss_pred CCc-----------hhhHh-----hhCCC-------CChHHHHHHHHHHHHHHHHhC
Q 023712 142 DLP-----------LHLHE-----SMGGW-------LNKEIVKYFEIYADTCFASFG 175 (278)
Q Consensus 142 ~~P-----------~wl~~-----~~ggw-------~~~~~~~~F~~ya~~v~~~~g 175 (278)
... .+... .+..| .++++.+.+.+-++.-+++|+
T Consensus 341 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~ 397 (726)
T PRK05402 341 PKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH 397 (726)
T ss_pred CCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC
Confidence 211 11000 01123 467888888888888888876
No 67
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=70.91 E-value=14 Score=35.37 Aligned_cols=60 Identities=13% Similarity=0.001 Sum_probs=47.7
Q ss_pred cHHHHHHHHHcCCCeeeecccccccccCCC-CCCCChhHHHHHHHHHHHHHhcCCccEEeec
Q 023712 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGL-GTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (278)
Q Consensus 79 y~eDi~l~k~lG~~~~R~si~WsRi~P~~~-G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~ 139 (278)
-.+|++...+.|++.+++.++=|...-... + .=-.+.++.+.++|+.++++|+++.+++.
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~-~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is 183 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNIN-CSIEESLVRYREVALAAKKHSIPVRGYVS 183 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 579999999999999999987665544321 3 23456889999999999999999977764
No 68
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=70.13 E-value=8.3 Score=35.25 Aligned_cols=59 Identities=20% Similarity=0.219 Sum_probs=45.7
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCC-CCCCCChhHHHHHHHHHHHHHhcCCccEEeec
Q 023712 80 KEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (278)
Q Consensus 80 ~eDi~l~k~lG~~~~R~si~WsRi~P~~-~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~ 139 (278)
.+|++...+.|++.+|+.++=|...-.. .+ .=-.+.++...+++..+++.|+++.+++-
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~-~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 74 MDDARIAVETGVDGVDLVFGTSPFLREASHG-KSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 6799999999999999988644433221 12 12245689999999999999999999885
No 69
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=69.99 E-value=16 Score=33.01 Aligned_cols=60 Identities=25% Similarity=0.227 Sum_probs=46.5
Q ss_pred cHHHHHHHHHcCCCeeeecccccccccCC-CCCCCChhHHHHHHHHHHHHHhcCCccEEeec
Q 023712 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (278)
Q Consensus 79 y~eDi~l~k~lG~~~~R~si~WsRi~P~~-~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~ 139 (278)
-.+|++...+.|++.+|+.++.|.+.-.. .+ .-.++.++...++++.+++.|+++.+++.
T Consensus 71 ~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~-~~~~~~~~~~~~~i~~a~~~G~~v~~~~~ 131 (259)
T cd07939 71 VKEDIEAALRCGVTAVHISIPVSDIHLAHKLG-KDRAWVLDQLRRLVGRAKDRGLFVSVGAE 131 (259)
T ss_pred CHHHHHHHHhCCcCEEEEEEecCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHCCCeEEEeec
Confidence 37899999999999999999877664322 12 22346788899999999999998876653
No 70
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=69.99 E-value=7.9 Score=38.30 Aligned_cols=64 Identities=23% Similarity=0.296 Sum_probs=42.3
Q ss_pred CcccCcHHHHHHHHHcCCCeeeecccccc--------cccCCC---------CCCCChh--HHHHHHHHHHHHHhcCCcc
Q 023712 74 DHYHRYKEDIDLIAKLGFDAYRFSISWSR--------IFPDGL---------GTKINME--GITFYNNIIDALLQKGIQP 134 (278)
Q Consensus 74 d~y~~y~eDi~l~k~lG~~~~R~si~WsR--------i~P~~~---------G~~~n~~--~l~~y~~~i~~l~~~GI~p 134 (278)
+.|....+-++.+++||++++=++=...- ..|... | .+|+. ..+=++++|++|+++||++
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~-~id~~fGt~~dl~~Li~~~H~~Gi~v 97 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKG-TVRTKYGTKEELLNAIDALHENGIKV 97 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccC-CcCcCcCCHHHHHHHHHHHHHCCCEE
Confidence 33444567789999999999988743222 111110 0 12221 2355899999999999999
Q ss_pred EEee
Q 023712 135 YVTL 138 (278)
Q Consensus 135 ivtL 138 (278)
|+++
T Consensus 98 i~D~ 101 (479)
T PRK09441 98 YADV 101 (479)
T ss_pred EEEE
Confidence 9974
No 71
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=69.54 E-value=9.3 Score=38.57 Aligned_cols=63 Identities=17% Similarity=0.289 Sum_probs=41.5
Q ss_pred cccCcHHHHHHHHHcCCCeeeecccccccccCCC-C------CCCChh--HHHHHHHHHHHHHhcCCccEEeec
Q 023712 75 HYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGL-G------TKINME--GITFYNNIIDALLQKGIQPYVTLY 139 (278)
Q Consensus 75 ~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~-G------~~~n~~--~l~~y~~~i~~l~~~GI~pivtL~ 139 (278)
-+.-..+-++.+++||++++=++=-... |... | ..+|+. ..+=++++|++|+++||++|+++.
T Consensus 25 ~~~gi~~~l~yl~~lG~~~i~l~Pi~~~--~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 25 DLRGIIEKLDYLKKLGVDYIWLNPFYVS--PQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred CHHHHHHhHHHHHHcCCCEEEECCcccC--CCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 3444567789999999999987632221 1110 1 012221 245689999999999999999853
No 72
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=69.36 E-value=20 Score=33.18 Aligned_cols=136 Identities=17% Similarity=0.214 Sum_probs=75.7
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCC---chh----------hHhhhCCC----C----ChHHH
Q 023712 102 RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL---PLH----------LHESMGGW----L----NKEIV 160 (278)
Q Consensus 102 Ri~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~---P~w----------l~~~~ggw----~----~~~~~ 160 (278)
+..|...| -++.+.+.-++++++.++++|-.+++=|.|-+- |.. .......- . -.+++
T Consensus 62 ~~~~~~~~-~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~~~~~~~~~mt~~ei~~~i 140 (327)
T cd02803 62 KGYPGQLG-IYDDEQIPGLRKLTEAVHAHGAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSPGGGEPPREMTKEEIEQII 140 (327)
T ss_pred cCCCCCcC-cCCHHHHHHHHHHHHHHHhCCCHhhHHhhCCCcCCCCcCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHH
Confidence 34444346 678899999999999999999999999998421 100 00000000 1 13578
Q ss_pred HHHHHHHHHHHHHhC-CCcceEEEecCcccccccCcccccc-CCCC--CCCCCchHHHHHHHHHHHHHHHHHHHHHHhcC
Q 023712 161 KYFEIYADTCFASFG-DRVKNWITINEPLQTAVNGYCTGIF-APGR--HQHSSTEPYLVAHHQILAHAAAFSVYQRKYKD 236 (278)
Q Consensus 161 ~~F~~ya~~v~~~~g-d~V~~w~t~NEP~~~~~~gy~~g~~-~P~~--~~~~~~~~~~~~h~~l~AHa~a~~~~r~~~~~ 236 (278)
+.|++-|+.+.+. | |-|. +-+-.||+...| .|.. +.+..-. .+-|-+.--...++.+|+..
T Consensus 141 ~~~~~aA~~a~~a-GfDgve---------ih~~~gyL~~qFlsp~~n~R~d~yGg---s~enr~r~~~eii~avr~~~-- 205 (327)
T cd02803 141 EDFAAAARRAKEA-GFDGVE---------IHGAHGYLLSQFLSPYTNKRTDEYGG---SLENRARFLLEIVAAVREAV-- 205 (327)
T ss_pred HHHHHHHHHHHHc-CCCEEE---------EcchhhhHHHHhcCccccCCCcccCC---CHHHHHHHHHHHHHHHHHHc--
Confidence 8888888776653 3 2232 334467765433 3421 1111111 12233333345666677653
Q ss_pred CCCCeEEceecCceeee
Q 023712 237 KQGGNIGLVVDCEWAEA 253 (278)
Q Consensus 237 ~~~~~iGi~~~~~~~~p 253 (278)
.++..||+-++.....+
T Consensus 206 g~d~~i~vris~~~~~~ 222 (327)
T cd02803 206 GPDFPVGVRLSADDFVP 222 (327)
T ss_pred CCCceEEEEechhccCC
Confidence 24567888887654443
No 73
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=69.20 E-value=16 Score=32.47 Aligned_cols=60 Identities=22% Similarity=0.189 Sum_probs=45.0
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCC-CCCCCChhHHHHHHHHHHHHHhcCCccEEeecc
Q 023712 80 KEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYH 140 (278)
Q Consensus 80 ~eDi~l~k~lG~~~~R~si~WsRi~P~~-~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H 140 (278)
+++++.+++.|++.+|++++-+.+.-.. .+ .=.+..++...+.++.+++.|+++.+.+..
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~-~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~ 137 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLN-KSREEDLENAEEAIEAAKEAGLEVEGSLED 137 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 8999999999999999999866422111 01 112235678889999999999999999854
No 74
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=68.77 E-value=24 Score=34.18 Aligned_cols=125 Identities=15% Similarity=0.201 Sum_probs=69.6
Q ss_pred cHHHHHHHHHcCCCeeeeccc-c-cccccCCCCCCCChhHHHHHHHHHHHHHhcCCc-cEEeeccCCCchhhHhhhCCCC
Q 023712 79 YKEDIDLIAKLGFDAYRFSIS-W-SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQ-PYVTLYHWDLPLHLHESMGGWL 155 (278)
Q Consensus 79 y~eDi~l~k~lG~~~~R~si~-W-sRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~-pivtL~H~~~P~wl~~~~ggw~ 155 (278)
-++.++.|+++|++.+-++++ - +++...- |...+ .+-..+.++.+++.|+. +-++|. +++|. .
T Consensus 114 t~e~l~~l~~~GvnrislGvQS~~d~~L~~l-~R~~~---~~~~~~ai~~l~~~G~~~v~~dlI-~GlPg---------q 179 (400)
T PRK07379 114 DLEQLQGYRSLGVNRVSLGVQAFQDELLALC-GRSHR---VKDIFAAVDLIHQAGIENFSLDLI-SGLPH---------Q 179 (400)
T ss_pred CHHHHHHHHHCCCCEEEEEcccCCHHHHHHh-CCCCC---HHHHHHHHHHHHHcCCCeEEEEee-cCCCC---------C
Confidence 368899999999996666662 2 2222221 31233 24567889999999998 556665 46662 2
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCcceEEEecCcccccccCccccccC-CCCCCCCCchHHHHHHHHHHH
Q 023712 156 NKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIFA-PGRHQHSSTEPYLVAHHQILA 222 (278)
Q Consensus 156 ~~~~~~~F~~ya~~v~~~~gd~V~~w~t~NEP~~~~~~gy~~g~~~-P~~~~~~~~~~~~~~h~~l~A 222 (278)
+ .+.+.+=.+.+.+-=-+.|..+...-||......-+..|.+. |... ...+++..+...|.+
T Consensus 180 t---~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~--~~~~~~~~~~~~L~~ 242 (400)
T PRK07379 180 T---LEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDE--TTAAMYRLAQEILTQ 242 (400)
T ss_pred C---HHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCCCCCCHH--HHHHHHHHHHHHHHH
Confidence 2 333333333333322256777777778886544444445443 2211 122345555555554
No 75
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=68.28 E-value=15 Score=33.30 Aligned_cols=113 Identities=16% Similarity=0.106 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhcCCccEEeecc--------------CCCchhhHhh----------------hCC----CCChH-----
Q 023712 118 TFYNNIIDALLQKGIQPYVTLYH--------------WDLPLHLHES----------------MGG----WLNKE----- 158 (278)
Q Consensus 118 ~~y~~~i~~l~~~GI~pivtL~H--------------~~~P~wl~~~----------------~gg----w~~~~----- 158 (278)
+.++.+|+.-++.|..+|+||-= ...|.|-..+ .++ -.+|+
T Consensus 24 ~~~~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~~~~~~~P~~~~~~ 103 (239)
T PF12891_consen 24 DVADTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKTALTSNDPDTPDNP 103 (239)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSSS--SSSGGSSSSE
T ss_pred HHHHHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCCCCCCCCCCCCccH
Confidence 68899999999999999999852 1222221110 011 11333
Q ss_pred -HHHHHHHHHHHHHHHhCCC-----cceEEEecCcccccccCccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 023712 159 -IVKYFEIYADTCFASFGDR-----VKNWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQR 232 (278)
Q Consensus 159 -~~~~F~~ya~~v~~~~gd~-----V~~w~t~NEP~~~~~~gy~~g~~~P~~~~~~~~~~~~~~h~~l~AHa~a~~~~r~ 232 (278)
..+.| +..+..+||.. |++|.+-|||.+...- =..+||.+ ..+.=+.....+.|+|+| +
T Consensus 104 ~y~~ew---V~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~T--H~dVHP~~-------~t~~El~~r~i~~AkaiK---~ 168 (239)
T PF12891_consen 104 VYMDEW---VNYLVNKYGNASTNGGVKYYSLDNEPDLWHST--HRDVHPEP-------VTYDELRDRSIEYAKAIK---A 168 (239)
T ss_dssp EEHHHH---HHHHHHHH--TTSTTS--EEEESS-GGGHHHH--TTTT--S----------HHHHHHHHHHHHHHHH---H
T ss_pred hHHHHH---HHHHHHHHhccccCCCceEEEecCchHhhccc--ccccCCCC-------CCHHHHHHHHHHHHHHHH---h
Confidence 34544 66666777764 9999999999975210 00122322 224445566667777754 4
Q ss_pred HhcCCCCCe-EEceecC
Q 023712 233 KYKDKQGGN-IGLVVDC 248 (278)
Q Consensus 233 ~~~~~~~~~-iGi~~~~ 248 (278)
.. |.++ +|-+.-.
T Consensus 169 ~D---P~a~v~GP~~wg 182 (239)
T PF12891_consen 169 AD---PDAKVFGPVEWG 182 (239)
T ss_dssp H----TTSEEEEEEE-S
T ss_pred hC---CCCeEeechhhc
Confidence 44 3554 5666433
No 76
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=67.63 E-value=21 Score=33.01 Aligned_cols=61 Identities=15% Similarity=0.119 Sum_probs=46.5
Q ss_pred CcHHHHHHHHHcCCCeeeecccccccccCC-CCCCCChhHHHHHHHHHHHHHhcCCccEEeec
Q 023712 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (278)
Q Consensus 78 ~y~eDi~l~k~lG~~~~R~si~WsRi~P~~-~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~ 139 (278)
+-.+|+++..+.|++.+|+.++=|...-.. .+ .=.++.++...++|+.++++|+++.+++.
T Consensus 80 ~~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~-~~~~e~l~~~~~~v~~ak~~g~~v~~~i~ 141 (287)
T PRK05692 80 PNLKGLEAALAAGADEVAVFASASEAFSQKNIN-CSIAESLERFEPVAEAAKQAGVRVRGYVS 141 (287)
T ss_pred cCHHHHHHHHHcCCCEEEEEEecCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCEEEEEEE
Confidence 358999999999999999998655442221 13 22345788999999999999999887665
No 77
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=67.35 E-value=8.9 Score=38.76 Aligned_cols=92 Identities=18% Similarity=0.323 Sum_probs=55.5
Q ss_pred ccCcHHHHHHHHHcCCCeeeec-c-c------c-------cccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeec-
Q 023712 76 YHRYKEDIDLIAKLGFDAYRFS-I-S------W-------SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY- 139 (278)
Q Consensus 76 y~~y~eDi~l~k~lG~~~~R~s-i-~------W-------sRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~- 139 (278)
+.-..+-++.+++||++++-+. | + | -.+.|.- | ..+=++++|++|+++||++|+++.
T Consensus 110 ~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~-G------~~~e~k~lV~~aH~~Gi~VilD~V~ 182 (542)
T TIGR02402 110 FDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAY-G------GPDDLKALVDAAHGLGLGVILDVVY 182 (542)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccccc-C------CHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 3444566899999999999876 2 1 1 1111111 2 245689999999999999999853
Q ss_pred -cCC---------CchhhHhh-hCCC------CCh---HHHHHHHHHHHHHHHHhC
Q 023712 140 -HWD---------LPLHLHES-MGGW------LNK---EIVKYFEIYADTCFASFG 175 (278)
Q Consensus 140 -H~~---------~P~wl~~~-~ggw------~~~---~~~~~F~~ya~~v~~~~g 175 (278)
|.. .| |+... ..+| .++ .+.+.+.+-++.-+++||
T Consensus 183 NH~~~~~~~~~~~~~-y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~ 237 (542)
T TIGR02402 183 NHFGPEGNYLPRYAP-YFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYH 237 (542)
T ss_pred CCCCCccccccccCc-cccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhC
Confidence 532 12 22111 1223 234 666666666666666665
No 78
>PLN02784 alpha-amylase
Probab=67.33 E-value=10 Score=40.56 Aligned_cols=67 Identities=19% Similarity=0.320 Sum_probs=47.3
Q ss_pred CcccCcHHHHHHHHHcCCCeeeecccccccccCCCC----CCCChh--HHHHHHHHHHHHHhcCCccEEe--ecc
Q 023712 74 DHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLG----TKINME--GITFYNNIIDALLQKGIQPYVT--LYH 140 (278)
Q Consensus 74 d~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G----~~~n~~--~l~~y~~~i~~l~~~GI~pivt--L~H 140 (278)
.+|....+.++.+++||++++-++=.-....+.|.. ..+|.. ..+=++++|+.|+++||++|++ ++|
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH 592 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNH 592 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECccc
Confidence 467888999999999999999887543333333211 012211 2356899999999999999997 445
No 79
>PRK10785 maltodextrin glucosidase; Provisional
Probab=66.30 E-value=13 Score=38.14 Aligned_cols=59 Identities=17% Similarity=0.227 Sum_probs=38.9
Q ss_pred cHHHHHHHHHcCCCeeeecccccccccCCCC------CCCChh--HHHHHHHHHHHHHhcCCccEEeec
Q 023712 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLG------TKINME--GITFYNNIIDALLQKGIQPYVTLY 139 (278)
Q Consensus 79 y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G------~~~n~~--~l~~y~~~i~~l~~~GI~pivtL~ 139 (278)
..+-++.+++||++++=++=-... |...| ..+|+. ..+=++++|++|+++||++|+++.
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif~s--~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIFTA--PSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccC--CCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 345689999999999988731111 11111 012221 235689999999999999999754
No 80
>PRK03705 glycogen debranching enzyme; Provisional
Probab=65.81 E-value=13 Score=38.71 Aligned_cols=91 Identities=15% Similarity=0.222 Sum_probs=54.9
Q ss_pred HHHHHHcCCCeeeec-c-cc----------------------cccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEee
Q 023712 83 IDLIAKLGFDAYRFS-I-SW----------------------SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (278)
Q Consensus 83 i~l~k~lG~~~~R~s-i-~W----------------------sRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL 138 (278)
|+.+|+||++++-+. | +- -.+.|.- |+..+ ..++=++++|++|+++||++|+++
T Consensus 185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~y-gt~~~-~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAY-ASGPE-TALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred hHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccccc-CCCCc-chHHHHHHHHHHHHHCCCEEEEEE
Confidence 899999999999765 2 11 1122211 21111 235678999999999999999975
Q ss_pred c--cCC-----Cch----------hh--Hh--hhC---C------CCChHHHHHHHHHHHHHHHHhC
Q 023712 139 Y--HWD-----LPL----------HL--HE--SMG---G------WLNKEIVKYFEIYADTCFASFG 175 (278)
Q Consensus 139 ~--H~~-----~P~----------wl--~~--~~g---g------w~~~~~~~~F~~ya~~v~~~~g 175 (278)
. |-. -|. +. .. .|. | +.++.+.+.+.+-++.-+++||
T Consensus 263 V~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~~W~~e~g 329 (658)
T PRK03705 263 VFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLRYWVETCH 329 (658)
T ss_pred cccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHHHHHHHhC
Confidence 3 421 111 11 10 011 1 2367777777777777777775
No 81
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=64.53 E-value=28 Score=33.27 Aligned_cols=53 Identities=19% Similarity=0.244 Sum_probs=44.3
Q ss_pred HHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeec
Q 023712 83 IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (278)
Q Consensus 83 i~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~ 139 (278)
++.++++|.+++-+-+-|. |+... .+|.+.+++..++.++|.+.||..++-+.
T Consensus 112 ve~a~~~GAdAVk~lv~~~---~d~~~-~~~~~~~~~l~rv~~ec~~~giPlllE~l 164 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR---PDEDD-AINDRKHAFVERVGAECRANDIPFFLEPL 164 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC---CCcch-HHHHHHHHHHHHHHHHHHHcCCceEEEEe
Confidence 5779999999999999877 55322 46888899999999999999999888653
No 82
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=63.76 E-value=12 Score=38.01 Aligned_cols=63 Identities=19% Similarity=0.353 Sum_probs=42.1
Q ss_pred cccCcHHHHHHHHHcCCCeeeecccccccccCCC-C------CCCChh--HHHHHHHHHHHHHhcCCccEEeec
Q 023712 75 HYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGL-G------TKINME--GITFYNNIIDALLQKGIQPYVTLY 139 (278)
Q Consensus 75 ~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~-G------~~~n~~--~l~~y~~~i~~l~~~GI~pivtL~ 139 (278)
-+.-..+.++.+++||++++=++=-+.. |... | ..+|+. ..+-++++|++++++||++|+++.
T Consensus 31 dl~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 31 DLRGVTQRLDYLQKLGVDAIWLTPFYVS--PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred CHHHHHHhhHHHHhCCCCEEEECCCCCC--CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 3444567899999999999988633211 2110 1 012221 245689999999999999999754
No 83
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=63.55 E-value=29 Score=33.21 Aligned_cols=71 Identities=18% Similarity=0.221 Sum_probs=52.0
Q ss_pred HHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhCCCCChHHH
Q 023712 81 EDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIV 160 (278)
Q Consensus 81 eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~ 160 (278)
.-|++|.+.|++-+=.|+ +.|++ -+...+..+.++++.+.+.|+++||++. |+-|.+ -||. .+.+
T Consensus 20 ~Yi~~~~~~Gf~~IFtsl----~~~~~----~~~~~~~~~~ell~~Anklg~~vivDvn----Psil~~--l~~S-~~~l 84 (360)
T COG3589 20 AYIDRMHKYGFKRIFTSL----LIPEE----DAELYFHRFKELLKEANKLGLRVIVDVN----PSILKE--LNIS-LDNL 84 (360)
T ss_pred HHHHHHHHcCccceeeec----ccCCc----hHHHHHHHHHHHHHHHHhcCcEEEEEcC----HHHHhh--cCCC-hHHH
Confidence 447899999998877776 34443 2345789999999999999999999994 887765 3433 3445
Q ss_pred HHHHHH
Q 023712 161 KYFEIY 166 (278)
Q Consensus 161 ~~F~~y 166 (278)
+.|...
T Consensus 85 ~~f~e~ 90 (360)
T COG3589 85 SRFQEL 90 (360)
T ss_pred HHHHHh
Confidence 555555
No 84
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=63.42 E-value=57 Score=33.51 Aligned_cols=95 Identities=17% Similarity=0.207 Sum_probs=57.9
Q ss_pred HHHH-HHHHHcCCCeeeec-ccccccccCCCC------CCCChh--HHHHHHHHHHHHHhcCCccEEeec--cCCC----
Q 023712 80 KEDI-DLIAKLGFDAYRFS-ISWSRIFPDGLG------TKINME--GITFYNNIIDALLQKGIQPYVTLY--HWDL---- 143 (278)
Q Consensus 80 ~eDi-~l~k~lG~~~~R~s-i~WsRi~P~~~G------~~~n~~--~l~~y~~~i~~l~~~GI~pivtL~--H~~~---- 143 (278)
.+.+ +.+++||++++=+. |....-... -| ..++.. ..+=+.++|++|+++||++|+++. |...
T Consensus 159 ~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~-wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~~ 237 (613)
T TIGR01515 159 ADQLIPYVKELGFTHIELLPVAEHPFDGS-WGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDDHG 237 (613)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCC-CCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCccch
Confidence 4454 88999999999884 533211000 01 001110 134589999999999999999854 5321
Q ss_pred -------chhhHh-----hhCCC-------CChHHHHHHHHHHHHHHHHhC
Q 023712 144 -------PLHLHE-----SMGGW-------LNKEIVKYFEIYADTCFASFG 175 (278)
Q Consensus 144 -------P~wl~~-----~~ggw-------~~~~~~~~F~~ya~~v~~~~g 175 (278)
|.+... .+..| .++++.+.+.+-++..+++|+
T Consensus 238 ~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~ 288 (613)
T TIGR01515 238 LAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH 288 (613)
T ss_pred hhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 111110 00112 357888899998998888886
No 85
>PRK09505 malS alpha-amylase; Reviewed
Probab=63.38 E-value=15 Score=38.30 Aligned_cols=61 Identities=25% Similarity=0.420 Sum_probs=40.8
Q ss_pred cHHHHHHHHHcCCCeeeecccccccc-----------cC-C-CC------CCCChh--HHHHHHHHHHHHHhcCCccEEe
Q 023712 79 YKEDIDLIAKLGFDAYRFSISWSRIF-----------PD-G-LG------TKINME--GITFYNNIIDALLQKGIQPYVT 137 (278)
Q Consensus 79 y~eDi~l~k~lG~~~~R~si~WsRi~-----------P~-~-~G------~~~n~~--~l~~y~~~i~~l~~~GI~pivt 137 (278)
..+-++.+++||++++=++=-...+. |. . .| ..+|+. ..+=++++|++++++||++|++
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 45568999999999999874333321 10 0 01 012222 3467899999999999999997
Q ss_pred ec
Q 023712 138 LY 139 (278)
Q Consensus 138 L~ 139 (278)
+.
T Consensus 312 ~V 313 (683)
T PRK09505 312 VV 313 (683)
T ss_pred EC
Confidence 43
No 86
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=63.27 E-value=34 Score=32.73 Aligned_cols=94 Identities=12% Similarity=0.128 Sum_probs=58.7
Q ss_pred cHHHHHHHHHcCCCeeeecccccccccCC---CCCCCChhHHHHHHHHHHHHHhcCCc-cEEeeccCCCchhhHhhhCCC
Q 023712 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG---LGTKINMEGITFYNNIIDALLQKGIQ-PYVTLYHWDLPLHLHESMGGW 154 (278)
Q Consensus 79 y~eDi~l~k~lG~~~~R~si~WsRi~P~~---~G~~~n~~~l~~y~~~i~~l~~~GI~-pivtL~H~~~P~wl~~~~ggw 154 (278)
-++.++.|+++|++.+-+++ .-+-++- -|...+ .+-..+.++.+++.|+. +-++|. +++|.
T Consensus 102 ~~~~l~~l~~~G~nrislGv--QS~~~~~L~~l~R~~~---~~~~~~ai~~~~~~g~~~v~~Dli-~GlPg--------- 166 (370)
T PRK06294 102 SESYIRALALTGINRISIGV--QTFDDPLLKLLGRTHS---SSKAIDAVQECSEHGFSNLSIDLI-YGLPT--------- 166 (370)
T ss_pred CHHHHHHHHHCCCCEEEEcc--ccCCHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCeEEEEee-cCCCC---------
Confidence 36889999999999666555 2222221 121222 34567788999999997 456654 45552
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCcceEEEecCcccc
Q 023712 155 LNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQT 190 (278)
Q Consensus 155 ~~~~~~~~F~~ya~~v~~~~gd~V~~w~t~NEP~~~ 190 (278)
++.+.|.+-.+.+.+-=-+.|..+...=||...
T Consensus 167 ---qt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~ 199 (370)
T PRK06294 167 ---QSLSDFIVDLHQAITLPITHISLYNLTIDPHTS 199 (370)
T ss_pred ---CCHHHHHHHHHHHHccCCCeEEEeeeEecCCCh
Confidence 235556565665554323678888888888854
No 87
>PRK09936 hypothetical protein; Provisional
Probab=63.07 E-value=60 Score=30.46 Aligned_cols=62 Identities=23% Similarity=0.381 Sum_probs=46.0
Q ss_pred cHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHh
Q 023712 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHE 149 (278)
Q Consensus 79 y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~ 149 (278)
|++=+..++.+|++++ =+.|++.--+.-| .-+ .+.-+.++.+.+.||+++|.|+ +| |.|++.
T Consensus 40 Wq~~~~~~~~~G~~tL--ivQWt~yG~~~fg-~~~----g~La~~l~~A~~~Gl~v~vGL~-~D-p~y~q~ 101 (296)
T PRK09936 40 WQGLWSQLRLQGFDTL--VVQWTRYGDADFG-GQR----GWLAKRLAAAQQAGLKLVVGLY-AD-PEFFMH 101 (296)
T ss_pred HHHHHHHHHHcCCcEE--EEEeeeccCCCcc-cch----HHHHHHHHHHHHcCCEEEEccc-CC-hHHHHH
Confidence 4555899999999985 4689998221112 122 4789999999999999999997 56 766654
No 88
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=62.93 E-value=1.1e+02 Score=28.57 Aligned_cols=103 Identities=16% Similarity=0.172 Sum_probs=57.9
Q ss_pred HHHHHHcCCC--eeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCC-----chhhHhh-----
Q 023712 83 IDLIAKLGFD--AYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL-----PLHLHES----- 150 (278)
Q Consensus 83 i~l~k~lG~~--~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~-----P~wl~~~----- 150 (278)
++.+++.++. ++=+++.|..- .+ ...+|++-+--..++|+.|+++|+++++.++-+-. |......
T Consensus 30 ~~~~~~~~iP~d~i~lD~~~~~~--~~-~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~~~ 106 (317)
T cd06600 30 VDIMQKEGFPYDVVFLDIHYMDS--YR-LFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKGKF 106 (317)
T ss_pred HHHHHHcCCCcceEEEChhhhCC--CC-ceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCCEE
Confidence 4455555543 34444444321 11 11234433344568999999999998876653311 2211100
Q ss_pred -------------------hCCCCChHHHHHHHHHHHHHHHHhCCCcceEEEecCccc
Q 023712 151 -------------------MGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (278)
Q Consensus 151 -------------------~ggw~~~~~~~~F~~ya~~v~~~~gd~V~~w~t~NEP~~ 189 (278)
+-.|.||+..+.|.+..+.+....| -.-.|+=+|||..
T Consensus 107 v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~g-vdg~w~D~~Ep~~ 163 (317)
T cd06600 107 CEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQG-VDGIWLDMNEPSD 163 (317)
T ss_pred EECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCC-CceEEeeCCCCcc
Confidence 0135789999988887777655444 2335888999964
No 89
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=62.35 E-value=44 Score=31.72 Aligned_cols=58 Identities=19% Similarity=0.292 Sum_probs=49.5
Q ss_pred HHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCc
Q 023712 83 IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (278)
Q Consensus 83 i~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P 144 (278)
++.+|++|.+++.|=+-|. |+++. .+|..-.++.+++.++|++.+|--++-+..++.+
T Consensus 111 ~~rike~GadavK~Llyy~---pD~~~-~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~ 168 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYYD---VDEPD-EINEQKKAYIERIGSECVAEDIPFFLEILTYDEK 168 (324)
T ss_pred HHHHHHhCCCeEEEEEEEC---CCCCH-HHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCc
Confidence 6889999999999988776 55534 6898889999999999999999999988776644
No 90
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=62.21 E-value=22 Score=32.38 Aligned_cols=56 Identities=11% Similarity=0.147 Sum_probs=40.0
Q ss_pred cHHHHHHHHHcCCCeeeeccccc-ccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEee
Q 023712 79 YKEDIDLIAKLGFDAYRFSISWS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (278)
Q Consensus 79 y~eDi~l~k~lG~~~~R~si~Ws-Ri~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL 138 (278)
-+|.++.|+++|++.+-++++-+ ++.+.-.+ .- .++.+.+.++.++++||.+.+.+
T Consensus 122 ~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~-~~---s~~~~~~ai~~l~~~Gi~v~~~~ 178 (296)
T TIGR00433 122 DPEQAKRLKDAGLDYYNHNLDTSQEFYSNIIS-TH---TYDDRVDTLENAKKAGLKVCSGG 178 (296)
T ss_pred CHHHHHHHHHcCCCEEEEcccCCHHHHhhccC-CC---CHHHHHHHHHHHHHcCCEEEEeE
Confidence 47999999999999999998821 13332112 22 35677889999999999865543
No 91
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=61.63 E-value=46 Score=31.66 Aligned_cols=59 Identities=20% Similarity=0.325 Sum_probs=50.3
Q ss_pred HHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCc
Q 023712 82 DIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (278)
Q Consensus 82 Di~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P 144 (278)
+++.+|++|.+++.|=+-|. |+++- .+|..-.++.+++.++|++.+|--++-+..++.+
T Consensus 112 s~~rike~GadavK~Llyy~---pD~~~-ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~ 170 (329)
T PRK04161 112 SVKRLKEAGADAVKFLLYYD---VDGDE-EINDQKQAYIERIGSECTAEDIPFFLELLTYDER 170 (329)
T ss_pred hHHHHHHhCCCeEEEEEEEC---CCCCH-HHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCc
Confidence 57899999999999988776 55433 7888889999999999999999999998877644
No 92
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=60.70 E-value=35 Score=32.64 Aligned_cols=85 Identities=20% Similarity=0.197 Sum_probs=58.6
Q ss_pred ccCCcccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHhh
Q 023712 71 VAVDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHES 150 (278)
Q Consensus 71 ~a~d~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~ 150 (278)
+|.-||+ |+-.+.. .+.|++.+|+ -| | .+-. -+..+.+++.++++|+.+=+..+|-.++.-+.++
T Consensus 76 VADIHFd-~~lAl~a-~~~g~dkiRI-------NP---G-Nig~--~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~k 140 (346)
T TIGR00612 76 VADIHFD-YRLAALA-MAKGVAKVRI-------NP---G-NIGF--RERVRDVVEKARDHGKAMRIGVNHGSLERRLLEK 140 (346)
T ss_pred EEeeCCC-cHHHHHH-HHhccCeEEE-------CC---C-CCCC--HHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHHH
Confidence 3444554 3443333 3457777774 34 4 3332 2588999999999999999999999999999999
Q ss_pred hCCCCChHHHHHHHHHHHHH
Q 023712 151 MGGWLNKEIVKYFEIYADTC 170 (278)
Q Consensus 151 ~ggw~~~~~~~~F~~ya~~v 170 (278)
||+-+....++.-.++++.|
T Consensus 141 yg~~t~eamveSAl~~v~~l 160 (346)
T TIGR00612 141 YGDATAEAMVQSALEEAAIL 160 (346)
T ss_pred cCCCCHHHHHHHHHHHHHHH
Confidence 87644445666666666654
No 93
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=59.60 E-value=14 Score=35.31 Aligned_cols=106 Identities=17% Similarity=0.003 Sum_probs=69.3
Q ss_pred CcHHHHHHHHHcCCCeeeecccccccccCC-CCCCCChhHHHHHHHHHHHHHhcCCccEEeeccC--CCchhhHhh----
Q 023712 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW--DLPLHLHES---- 150 (278)
Q Consensus 78 ~y~eDi~l~k~lG~~~~R~si~WsRi~P~~-~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~--~~P~wl~~~---- 150 (278)
-.++|++.+.+.|++.+|+.++-|.+.-.. -+ .-..+.++...+.+..+++.|+++.+++-.. .-|..+.+-
T Consensus 72 ~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~-~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~ 150 (363)
T TIGR02090 72 ALKKDIDKAIDCGVDSIHTFIATSPIHLKYKLK-KSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRA 150 (363)
T ss_pred cCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHH
Confidence 358999999999999999988776664332 12 2234568889999999999999998887542 112322211
Q ss_pred --h----------CCCCChHHHHHHHHHHHHHHHHhCCCcc-eEEEecCccc
Q 023712 151 --M----------GGWLNKEIVKYFEIYADTCFASFGDRVK-NWITINEPLQ 189 (278)
Q Consensus 151 --~----------ggw~~~~~~~~F~~ya~~v~~~~gd~V~-~w~t~NEP~~ 189 (278)
. -|-.. ++.+.++.+.+.++++ +. -+..-|-..+
T Consensus 151 ~~~g~~~i~l~DT~G~~~---P~~v~~li~~l~~~~~--~~l~~H~Hnd~Gl 197 (363)
T TIGR02090 151 EEAGADRINIADTVGVLT---PQKMEELIKKLKENVK--LPISVHCHNDFGL 197 (363)
T ss_pred HhCCCCEEEEeCCCCccC---HHHHHHHHHHHhcccC--ceEEEEecCCCCh
Confidence 1 23333 4555666666666664 33 3667787765
No 94
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=59.54 E-value=26 Score=35.33 Aligned_cols=61 Identities=21% Similarity=0.342 Sum_probs=39.9
Q ss_pred ccCcHHHHHHHHHcCCCeeeecccccccccC-CCC------CCCChh--HHHHHHHHHHHHHhcCCccEEee
Q 023712 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPD-GLG------TKINME--GITFYNNIIDALLQKGIQPYVTL 138 (278)
Q Consensus 76 y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~-~~G------~~~n~~--~l~~y~~~i~~l~~~GI~pivtL 138 (278)
+.-..+-++.+++||++++=++=-.+. |. ..| ..+|++ ..+=++++|++++++||++|+++
T Consensus 27 l~gi~~~Ldyl~~LGv~~i~L~Pi~~~--~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 27 FPGLTSKLDYLKWLGVDALWLLPFFQS--PLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HHHHHHhHHHHHHCCCCEEEECCCcCC--CCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 333456689999999999987632111 10 001 122222 24568999999999999999974
No 95
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=59.44 E-value=51 Score=31.35 Aligned_cols=105 Identities=13% Similarity=0.089 Sum_probs=60.0
Q ss_pred cHHHHHHHHHcCCCeeeecc-ccc-ccccCCCCCCCChhHHHHHHHHHHHHHhcCCc-cEEeeccCCCchhhHhhhCCCC
Q 023712 79 YKEDIDLIAKLGFDAYRFSI-SWS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQ-PYVTLYHWDLPLHLHESMGGWL 155 (278)
Q Consensus 79 y~eDi~l~k~lG~~~~R~si-~Ws-Ri~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~-pivtL~H~~~P~wl~~~~ggw~ 155 (278)
-++.+++|+++|++.+-+++ +-+ ++...- |...+ .+-..+.++.+++.|+. +.++|. +++|. .
T Consensus 107 ~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l-~R~~s---~~~~~~a~~~l~~~g~~~v~~dli-~GlPg---------q 172 (375)
T PRK05628 107 SPEFFAALRAAGFTRVSLGMQSAAPHVLAVL-DRTHT---PGRAVAAAREARAAGFEHVNLDLI-YGTPG---------E 172 (375)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHc-CCCCC---HHHHHHHHHHHHHcCCCcEEEEEe-ccCCC---------C
Confidence 46889999999999766666 222 222221 21223 35677889999999998 556654 45552 2
Q ss_pred ChHHHHHHHHHHHHHHHHhC-CCcceEEEecCcccccccCccccccC
Q 023712 156 NKEIVKYFEIYADTCFASFG-DRVKNWITINEPLQTAVNGYCTGIFA 201 (278)
Q Consensus 156 ~~~~~~~F~~ya~~v~~~~g-d~V~~w~t~NEP~~~~~~gy~~g~~~ 201 (278)
+ .+.|.+=.+.+.+ ++ +.+..+...=||+.....-+..|.++
T Consensus 173 t---~~~~~~tl~~~~~-l~~~~i~~y~l~~~~gT~l~~~~~~g~~~ 215 (375)
T PRK05628 173 S---DDDWRASLDAALE-AGVDHVSAYALIVEDGTALARRVRRGELP 215 (375)
T ss_pred C---HHHHHHHHHHHHh-cCCCEEEeeeeecCCCChHHHHhhcCCCC
Confidence 2 3444444444333 44 45666665557776443333344443
No 96
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=59.36 E-value=58 Score=30.02 Aligned_cols=106 Identities=15% Similarity=0.205 Sum_probs=66.1
Q ss_pred cHHHHHHHHHcC--CCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccC---CCchhhHhh---
Q 023712 79 YKEDIDLIAKLG--FDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW---DLPLHLHES--- 150 (278)
Q Consensus 79 y~eDi~l~k~lG--~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~---~~P~wl~~~--- 150 (278)
..+-++.+++.| ++++=+++.|.+-.-.+.= .+|++.+--...+|++|+++|+++++.+.-+ +.|..-+.+
T Consensus 26 v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f-~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~g 104 (308)
T cd06593 26 VNEFADGMRERNLPCDVIHLDCFWMKEFQWCDF-EFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEKG 104 (308)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccCCcceee-EECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHCC
Confidence 456789999999 5567777888753321111 4455545556899999999999988876532 222211100
Q ss_pred ----------h--------CC---CCChHHHHHHHHHHHHHHHHhCCCcce-EEEecCcc
Q 023712 151 ----------M--------GG---WLNKEIVKYFEIYADTCFASFGDRVKN-WITINEPL 188 (278)
Q Consensus 151 ----------~--------gg---w~~~~~~~~F~~ya~~v~~~~gd~V~~-w~t~NEP~ 188 (278)
+ ++ +.||++.+.|.+..+.+.+ .| |++ |.=+|||.
T Consensus 105 ~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~G--id~~~~D~~e~~ 161 (308)
T cd06593 105 YLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MG--VDCFKTDFGERI 161 (308)
T ss_pred eEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hC--CcEEecCCCCCC
Confidence 0 11 5688888888777765543 43 554 55688873
No 97
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=59.27 E-value=33 Score=32.95 Aligned_cols=105 Identities=19% Similarity=0.024 Sum_probs=67.8
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCC-CCCCCChhHHHHHHHHHHHHHhcCCccEEeeccC--CCchhhHhh------
Q 023712 80 KEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW--DLPLHLHES------ 150 (278)
Q Consensus 80 ~eDi~l~k~lG~~~~R~si~WsRi~P~~-~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~--~~P~wl~~~------ 150 (278)
++|++.+.+.|++.+|++++-|.+.-.. .+ .--++.++...+.+..+++.|+++.++.-.. .-|..+.+-
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~-~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~ 156 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLK-KTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEE 156 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHh
Confidence 7899999999999999999766653322 13 2235678889999999999999988876431 112222211
Q ss_pred h----------CCCCChHHHHHHHHHHHHHHHHhCCCcceEEEecCccc
Q 023712 151 M----------GGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (278)
Q Consensus 151 ~----------ggw~~~~~~~~F~~ya~~v~~~~gd~V~~w~t~NEP~~ 189 (278)
. .|-.. +..+.++.+.+.+++ +..--+..-|-..+
T Consensus 157 ~Ga~~I~l~DT~G~~~---P~~v~~lv~~l~~~~-~~~l~~H~Hnd~Gl 201 (378)
T PRK11858 157 AGADRVRFCDTVGILD---PFTMYELVKELVEAV-DIPIEVHCHNDFGM 201 (378)
T ss_pred CCCCEEEEeccCCCCC---HHHHHHHHHHHHHhc-CCeEEEEecCCcCH
Confidence 0 23344 345555666666666 33334667777765
No 98
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=59.00 E-value=40 Score=30.93 Aligned_cols=65 Identities=12% Similarity=0.133 Sum_probs=48.5
Q ss_pred cHHHHHHHHHcCCCeeeecccccccccCC-CCCCCChhHHHHHHHHHHHHHhcCCccEEeec-cCCCc
Q 023712 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLY-HWDLP 144 (278)
Q Consensus 79 y~eDi~l~k~lG~~~~R~si~WsRi~P~~-~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~-H~~~P 144 (278)
-.+|++...+.|++.+++.++=|.+.-.. .+ .--.+.++...+.+..+++.|+++.+++. .|+.|
T Consensus 75 ~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~-~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~ 141 (274)
T cd07938 75 NLRGAERALAAGVDEVAVFVSASETFSQKNIN-CSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCP 141 (274)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHcC-CCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCC
Confidence 37899999999999999998655442221 12 22356788999999999999999988776 35444
No 99
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=58.58 E-value=31 Score=32.92 Aligned_cols=106 Identities=18% Similarity=0.023 Sum_probs=68.0
Q ss_pred cHHHHHHHHHcCCCeeeecccccccccCC-CCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCC--CchhhHhh-----
Q 023712 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWD--LPLHLHES----- 150 (278)
Q Consensus 79 y~eDi~l~k~lG~~~~R~si~WsRi~P~~-~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~--~P~wl~~~----- 150 (278)
-.+|++.+.+.|++.+|+.++-|.+.-.. .+ .=..+.++...+.|..+++.|+++.+++-... -|..+.+-
T Consensus 74 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~-~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~ 152 (365)
T TIGR02660 74 RDADIEAAARCGVDAVHISIPVSDLQIEAKLR-KDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAA 152 (365)
T ss_pred CHHHHHHHHcCCcCEEEEEEccCHHHHHHHhC-cCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHH
Confidence 37999999999999999999876543332 12 22345688889999999999999887765421 12222210
Q ss_pred -h----------CCCCChHHHHHHHHHHHHHHHHhCCCcceEEEecCccc
Q 023712 151 -M----------GGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (278)
Q Consensus 151 -~----------ggw~~~~~~~~F~~ya~~v~~~~gd~V~~w~t~NEP~~ 189 (278)
. -|-.. +..+.++.+.+.++++-. --+.+-|-..+
T Consensus 153 ~~Ga~~i~l~DT~G~~~---P~~v~~lv~~l~~~~~v~-l~~H~HNd~Gl 198 (365)
T TIGR02660 153 EAGADRFRFADTVGILD---PFSTYELVRALRQAVDLP-LEMHAHNDLGM 198 (365)
T ss_pred HcCcCEEEEcccCCCCC---HHHHHHHHHHHHHhcCCe-EEEEecCCCCh
Confidence 1 23333 455566666666676422 23677787765
No 100
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=58.22 E-value=36 Score=33.95 Aligned_cols=52 Identities=19% Similarity=0.310 Sum_probs=36.5
Q ss_pred cccCcHHH-----HHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeecc
Q 023712 75 HYHRYKED-----IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYH 140 (278)
Q Consensus 75 ~y~~y~eD-----i~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H 140 (278)
.|..|.+| ++...+.|++.+|+..+-+.+ +-....++.+++.|+.+..++.+
T Consensus 88 G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~ 144 (467)
T PRK14041 88 GYRHYADDVVELFVKKVAEYGLDIIRIFDALNDI--------------RNLEKSIEVAKKHGAHVQGAISY 144 (467)
T ss_pred CcccccchhhHHHHHHHHHCCcCEEEEEEeCCHH--------------HHHHHHHHHHHHCCCEEEEEEEe
Confidence 46678888 899999999999998764432 23455566666777666655544
No 101
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=57.87 E-value=37 Score=30.99 Aligned_cols=47 Identities=15% Similarity=0.144 Sum_probs=38.6
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeecc
Q 023712 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYH 140 (278)
Q Consensus 80 ~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H 140 (278)
.+|++...+.|++.+|+++..+ .++-..++++.++++|+++.+++.+
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~--------------~~~~~~~~i~~ak~~G~~v~~~~~~ 131 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH--------------EFDEALPLIKAIKEKGYEVFFNLMA 131 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc--------------cHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 5889999999999999987322 2566788999999999999988865
No 102
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=57.78 E-value=50 Score=31.42 Aligned_cols=95 Identities=16% Similarity=0.205 Sum_probs=56.0
Q ss_pred cHHHHHHHHHcCCCeeeeccc--ccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccE-EeeccCCCchhhHhhhCCCC
Q 023712 79 YKEDIDLIAKLGFDAYRFSIS--WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLHLHESMGGWL 155 (278)
Q Consensus 79 y~eDi~l~k~lG~~~~R~si~--WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pi-vtL~H~~~P~wl~~~~ggw~ 155 (278)
-++.+++|+++|++.+-++++ -+++...- |...+ .+-..+.++.+++.|+..+ +.+. +++|. .
T Consensus 99 ~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l-~r~~~---~~~~~~~i~~l~~~g~~~v~~dli-~GlPg---------q 164 (377)
T PRK08599 99 TKEKLQVLKDSGVNRISLGVQTFNDELLKKI-GRTHN---EEDVYEAIANAKKAGFDNISIDLI-YALPG---------Q 164 (377)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHc-CCCCC---HHHHHHHHHHHHHcCCCcEEEeee-cCCCC---------C
Confidence 468899999999997777762 22333332 21233 3567889999999999754 3332 45552 3
Q ss_pred ChHHHHHHHHHHHHHHHHhC-CCcceEEEecCccccc
Q 023712 156 NKEIVKYFEIYADTCFASFG-DRVKNWITINEPLQTA 191 (278)
Q Consensus 156 ~~~~~~~F~~ya~~v~~~~g-d~V~~w~t~NEP~~~~ 191 (278)
+. +.+.+=.+.+.+ ++ +.|..+...-+|....
T Consensus 165 t~---~~~~~~l~~~~~-l~~~~i~~y~l~~~pgT~~ 197 (377)
T PRK08599 165 TI---EDFKESLAKALA-LDIPHYSAYSLILEPKTVF 197 (377)
T ss_pred CH---HHHHHHHHHHHc-cCCCEEeeeceeecCCChh
Confidence 33 334444444333 33 3455555556776543
No 103
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=57.54 E-value=76 Score=29.59 Aligned_cols=107 Identities=16% Similarity=0.231 Sum_probs=62.1
Q ss_pred HHHHHHHHcCCC--eeeecccccccccCC--CC-CCCChhHHHHHHHHHHHHHhcCCccEEeeccC---CCchhhH--hh
Q 023712 81 EDIDLIAKLGFD--AYRFSISWSRIFPDG--LG-TKINMEGITFYNNIIDALLQKGIQPYVTLYHW---DLPLHLH--ES 150 (278)
Q Consensus 81 eDi~l~k~lG~~--~~R~si~WsRi~P~~--~G-~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~---~~P~wl~--~~ 150 (278)
+-++-+++.|+. ++=+++.|....... .| ..+|++-+---.++|++|+++|+++++.++-+ +.|..-+ ++
T Consensus 28 ~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~~ 107 (317)
T cd06598 28 DTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVKA 107 (317)
T ss_pred HHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHhC
Confidence 445666666654 555666674332210 01 12344334445789999999999999887643 3333200 00
Q ss_pred -h-------------------C---CCCChHHHHHHHHHHHHHHHHhCCCcc-eEEEecCcccc
Q 023712 151 -M-------------------G---GWLNKEIVKYFEIYADTCFASFGDRVK-NWITINEPLQT 190 (278)
Q Consensus 151 -~-------------------g---gw~~~~~~~~F~~ya~~v~~~~gd~V~-~w~t~NEP~~~ 190 (278)
+ + .++||++.+.|.+..+.+ ... -|+ .|.=+|||...
T Consensus 108 g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~-~~~--Gvdg~w~D~~Ep~~~ 168 (317)
T cd06598 108 GALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL-IDQ--GVTGWWGDLGEPEVH 168 (317)
T ss_pred CCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh-hhC--CccEEEecCCCcccc
Confidence 0 1 256888888887777665 333 344 48889999754
No 104
>PRK14705 glycogen branching enzyme; Provisional
Probab=57.41 E-value=75 Score=35.59 Aligned_cols=91 Identities=19% Similarity=0.274 Sum_probs=55.1
Q ss_pred HHHHHHcCCCeeeec-c-------cccccccCCCCCCCCh--hHHHHHHHHHHHHHhcCCccEEeec--cCCCchhhHhh
Q 023712 83 IDLIAKLGFDAYRFS-I-------SWSRIFPDGLGTKINM--EGITFYNNIIDALLQKGIQPYVTLY--HWDLPLHLHES 150 (278)
Q Consensus 83 i~l~k~lG~~~~R~s-i-------~WsRi~P~~~G~~~n~--~~l~~y~~~i~~l~~~GI~pivtL~--H~~~P~wl~~~ 150 (278)
|+.+|+||++++=+. | +|- ..|...- .++. -..+=++.+|++|+++||.+|+++. |+..=.|....
T Consensus 772 ldYlk~LGvt~IeLmPv~e~p~~~swG-Y~~~~y~-ap~~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~~l~~ 849 (1224)
T PRK14705 772 VDYVKWLGFTHVEFMPVAEHPFGGSWG-YQVTSYF-APTSRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSWALAQ 849 (1224)
T ss_pred HHHHHHhCCCEEEECccccCCCCCCCC-CCccccC-CcCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcchhhhhh
Confidence 689999999999765 2 231 1111100 0110 0234579999999999999999854 54211121100
Q ss_pred h----------------CCC-------CChHHHHHHHHHHHHHHHHhC
Q 023712 151 M----------------GGW-------LNKEIVKYFEIYADTCFASFG 175 (278)
Q Consensus 151 ~----------------ggw-------~~~~~~~~F~~ya~~v~~~~g 175 (278)
+ ..| .++++.+.+.+=+..-+++|+
T Consensus 850 fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 850 FDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred cCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 0 112 356778888888888888886
No 105
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=56.77 E-value=15 Score=32.71 Aligned_cols=54 Identities=19% Similarity=0.443 Sum_probs=31.3
Q ss_pred ccCcHHHHHHHHHcCCCeeeec-cc-cc-----------------ccccCCCCCCCChhHHHHHHHHHHHHHhcCCccE
Q 023712 76 YHRYKEDIDLIAKLGFDAYRFS-IS-WS-----------------RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY 135 (278)
Q Consensus 76 y~~y~eDi~l~k~lG~~~~R~s-i~-Ws-----------------Ri~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pi 135 (278)
.=.-+.-++++++||.+++.|- +. =. ++||+| | +| ++-+.+++..++++|++-+
T Consensus 134 ~V~vetAiaml~dmG~~SiKffPm~Gl~~leE~~avAkA~a~~g~~lEPTG-G--Id---l~N~~~I~~i~l~aGv~~v 206 (218)
T PF07071_consen 134 IVPVETAIAMLKDMGGSSIKFFPMGGLKHLEELKAVAKACARNGFTLEPTG-G--ID---LDNFEEIVKICLDAGVEKV 206 (218)
T ss_dssp EEEHHHHHHHHHHTT--EEEE---TTTTTHHHHHHHHHHHHHCT-EEEEBS-S-------TTTHHHHHHHHHHTT-S-B
T ss_pred cccHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceeCCcC-C--cC---HHHHHHHHHHHHHcCCCee
Confidence 3455677999999999999862 11 00 136665 3 66 4567777777777777654
No 106
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=56.73 E-value=20 Score=37.85 Aligned_cols=94 Identities=15% Similarity=0.230 Sum_probs=54.8
Q ss_pred HHHHHHHcCCCeeeecccccccccCCCC------CCCCh--hHHHHHHHHHHHHHhcCCccEEeecc--CCC--------
Q 023712 82 DIDLIAKLGFDAYRFSISWSRIFPDGLG------TKINM--EGITFYNNIIDALLQKGIQPYVTLYH--WDL-------- 143 (278)
Q Consensus 82 Di~l~k~lG~~~~R~si~WsRi~P~~~G------~~~n~--~~l~~y~~~i~~l~~~GI~pivtL~H--~~~-------- 143 (278)
-++.+|+||++++-+.=-...-.-..-| ..++. -..+-++++|++|+++||.+|+++.+ ..-
T Consensus 256 ~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~~~~~gl~~ 335 (758)
T PLN02447 256 VLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASKNTLDGLNG 335 (758)
T ss_pred HHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEeccccccccccccccc
Confidence 4899999999999876322111000001 00010 01245799999999999999998653 211
Q ss_pred -----chhhHhhhCC----C-------CChHHHHHHHHHHHHHHHHhC
Q 023712 144 -----PLHLHESMGG----W-------LNKEIVKYFEIYADTCFASFG 175 (278)
Q Consensus 144 -----P~wl~~~~gg----w-------~~~~~~~~F~~ya~~v~~~~g 175 (278)
+.++.....| | .++++...+.+-++.-+++|+
T Consensus 336 fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~ 383 (758)
T PLN02447 336 FDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYK 383 (758)
T ss_pred cCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 1222211011 2 246777777777787788775
No 107
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=56.51 E-value=31 Score=32.03 Aligned_cols=63 Identities=21% Similarity=0.445 Sum_probs=45.1
Q ss_pred CcHHHHHHHHHcCCCeeeeccc----c-------cccccC--------CCCCCCChhHHHHHHHHHHHHHhcCCccEEee
Q 023712 78 RYKEDIDLIAKLGFDAYRFSIS----W-------SRIFPD--------GLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (278)
Q Consensus 78 ~y~eDi~l~k~lG~~~~R~si~----W-------sRi~P~--------~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL 138 (278)
..++-|+.|+..++|.+.+-++ | +.+-.. +.| .+.++ =++++++.++++||++|.-+
T Consensus 17 ~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~-~yT~~---di~elv~yA~~rgI~viPEi 92 (303)
T cd02742 17 SIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGG-FYTYA---QLKDIIEYAAARGIEVIPEI 92 (303)
T ss_pred HHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCC-eECHH---HHHHHHHHHHHcCCEEEEec
Confidence 3567799999999999877765 4 222211 114 56664 46999999999999999877
Q ss_pred ccCCCchhh
Q 023712 139 YHWDLPLHL 147 (278)
Q Consensus 139 ~H~~~P~wl 147 (278)
|+|...
T Consensus 93 ---D~PGH~ 98 (303)
T cd02742 93 ---DMPGHS 98 (303)
T ss_pred ---cchHHH
Confidence 566543
No 108
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=56.40 E-value=59 Score=29.76 Aligned_cols=46 Identities=17% Similarity=0.159 Sum_probs=35.6
Q ss_pred cHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEee
Q 023712 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (278)
Q Consensus 79 y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL 138 (278)
-++|++...+.|++.+|+++.-+. ++...+.++.++++|+++.+++
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~--------------~~~~~~~i~~ak~~G~~v~~~i 138 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALND--------------VRNLEVAIKAVKKAGKHVEGAI 138 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCCh--------------HHHHHHHHHHHHHCCCeEEEEE
Confidence 478899999999999999765333 3456777888888888877665
No 109
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=56.24 E-value=18 Score=40.29 Aligned_cols=63 Identities=17% Similarity=0.269 Sum_probs=39.7
Q ss_pred ccCcH--HHHHHHHHcCCCeeeecccccccc-----cCC-C---C------CCCCh----hHHHHHHHHHHHHHhcCCcc
Q 023712 76 YHRYK--EDIDLIAKLGFDAYRFSISWSRIF-----PDG-L---G------TKINM----EGITFYNNIIDALLQKGIQP 134 (278)
Q Consensus 76 y~~y~--eDi~l~k~lG~~~~R~si~WsRi~-----P~~-~---G------~~~n~----~~l~~y~~~i~~l~~~GI~p 134 (278)
|.... +.|+.+|+||++++=+.=-..... +.+ . | ..+++ ...+=++++|++|+++||++
T Consensus 184 ~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~V 263 (1221)
T PRK14510 184 FAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAV 263 (1221)
T ss_pred HhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEE
Confidence 44444 668899999999998762111110 000 0 0 01111 13567899999999999999
Q ss_pred EEee
Q 023712 135 YVTL 138 (278)
Q Consensus 135 ivtL 138 (278)
|+++
T Consensus 264 ILDv 267 (1221)
T PRK14510 264 ILDV 267 (1221)
T ss_pred EEEE
Confidence 9974
No 110
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=55.72 E-value=63 Score=31.11 Aligned_cols=73 Identities=25% Similarity=0.206 Sum_probs=54.1
Q ss_pred HHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhCCCCChHHHHHHHH
Q 023712 86 IAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEI 165 (278)
Q Consensus 86 ~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ 165 (278)
..+.|++.+| |-| | .+... -+..+.+++.++++|+.+=+..+|-.++.-+.++||+-+....++.-.+
T Consensus 97 a~~~G~~~iR-------INP---G-Nig~~-~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~ 164 (360)
T PRK00366 97 AAEAGADALR-------INP---G-NIGKR-DERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALR 164 (360)
T ss_pred HHHhCCCEEE-------ECC---C-CCCch-HHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHH
Confidence 3466888885 555 5 44210 1578999999999999999999999999999999865344446666666
Q ss_pred HHHHH
Q 023712 166 YADTC 170 (278)
Q Consensus 166 ya~~v 170 (278)
+++.|
T Consensus 165 ~~~~l 169 (360)
T PRK00366 165 HAKIL 169 (360)
T ss_pred HHHHH
Confidence 66654
No 111
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=55.21 E-value=61 Score=30.53 Aligned_cols=72 Identities=14% Similarity=0.097 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCCccEEeeccCCC-----chhhHhh------------------------hCCCCChHHHHHHHHHHHHH
Q 023712 120 YNNIIDALLQKGIQPYVTLYHWDL-----PLHLHES------------------------MGGWLNKEIVKYFEIYADTC 170 (278)
Q Consensus 120 y~~~i~~l~~~GI~pivtL~H~~~-----P~wl~~~------------------------~ggw~~~~~~~~F~~ya~~v 170 (278)
-..+|++|+++|+++++.++-+-. |..-+.+ +-.+.||++.+.|.+..+.+
T Consensus 66 p~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~ 145 (339)
T cd06603 66 PEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYD 145 (339)
T ss_pred HHHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHH
Confidence 367899999999998887764422 2211100 01357899999998888876
Q ss_pred HHHhC-CCcceEEEecCccccc
Q 023712 171 FASFG-DRVKNWITINEPLQTA 191 (278)
Q Consensus 171 ~~~~g-d~V~~w~t~NEP~~~~ 191 (278)
....+ +..-.|+=+|||.++.
T Consensus 146 ~~~~~~g~~g~w~D~~Ep~~f~ 167 (339)
T cd06603 146 KYKGSTENLYIWNDMNEPSVFN 167 (339)
T ss_pred hhcccCCCceEEeccCCccccC
Confidence 65433 2346689999998753
No 112
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=55.15 E-value=45 Score=32.81 Aligned_cols=76 Identities=13% Similarity=0.150 Sum_probs=48.4
Q ss_pred HHHHHHHHHcCCCeeeeccc-cc-ccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhCCCCCh
Q 023712 80 KEDIDLIAKLGFDAYRFSIS-WS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNK 157 (278)
Q Consensus 80 ~eDi~l~k~lG~~~~R~si~-Ws-Ri~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~ 157 (278)
+|.+++|+++|++.+-++++ -+ ++...- +...+ ++.+.+.+..++++||.+.+++. +++|. .++
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~~-~K~~~---~~~~~~~i~~~~~~Gi~v~~~~I-iGlPg---------et~ 352 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKNI-KKGLT---VEIARRFTRDCHKLGIKVHGTFI-LGLPG---------ETR 352 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHh-cCCCC---HHHHHHHHHHHHHCCCeEEEEEE-EeCCC---------CCH
Confidence 56789999999998888873 32 222211 11233 35678999999999999887765 24442 444
Q ss_pred HHHHHHHHHHHH
Q 023712 158 EIVKYFEIYADT 169 (278)
Q Consensus 158 ~~~~~F~~ya~~ 169 (278)
+....-.+|+..
T Consensus 353 e~~~~ti~~~~~ 364 (472)
T TIGR03471 353 ETIRKTIDFAKE 364 (472)
T ss_pred HHHHHHHHHHHh
Confidence 445555555443
No 113
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=54.82 E-value=66 Score=30.25 Aligned_cols=68 Identities=13% Similarity=0.208 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCCccEEeeccC-----CCchhhHhh-------------h-----------CCCCChHHHHHHHHHHHHH
Q 023712 120 YNNIIDALLQKGIQPYVTLYHW-----DLPLHLHES-------------M-----------GGWLNKEIVKYFEIYADTC 170 (278)
Q Consensus 120 y~~~i~~l~~~GI~pivtL~H~-----~~P~wl~~~-------------~-----------ggw~~~~~~~~F~~ya~~v 170 (278)
-.++|++|+++|++.++.++-+ +.|..-+.. + -.|.||++.+.|.+.-+.+
T Consensus 66 p~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~ 145 (339)
T cd06604 66 PKELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKF 145 (339)
T ss_pred HHHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHH
Confidence 3688999999998887654322 122221110 0 1367889888887766655
Q ss_pred HHHhCCCcc-eEEEecCcccc
Q 023712 171 FASFGDRVK-NWITINEPLQT 190 (278)
Q Consensus 171 ~~~~gd~V~-~w~t~NEP~~~ 190 (278)
. .. -|+ .|+=+|||..+
T Consensus 146 ~-~~--Gvdg~w~D~~Ep~~~ 163 (339)
T cd06604 146 V-DL--GVDGIWNDMNEPAVF 163 (339)
T ss_pred h-hC--CCceEeecCCCcccc
Confidence 4 23 344 47889999865
No 114
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=54.70 E-value=48 Score=31.43 Aligned_cols=72 Identities=13% Similarity=0.126 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCCccEEeeccC-CCchhhHh--hhCCCCChHHHHHHHHHHHHHHHHhCCCcceEEEecCccccccc
Q 023712 120 YNNIIDALLQKGIQPYVTLYHW-DLPLHLHE--SMGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVN 193 (278)
Q Consensus 120 y~~~i~~l~~~GI~pivtL~H~-~~P~wl~~--~~ggw~~~~~~~~F~~ya~~v~~~~gd~V~~w~t~NEP~~~~~~ 193 (278)
-.+++++|++.|++.++.+.-+ ..-..+.. .+-.|.||++.+.+.+..+.+.+ .| -.-.|+=+|||.++...
T Consensus 66 p~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDftnp~ar~wW~~~~~~l~~-~G-v~~~W~DmnEp~~~~~~ 140 (332)
T cd06601 66 PKEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLGRPDVREWWGNQYKYLFD-IG-LEFVWQDMTTPAIMPSY 140 (332)
T ss_pred HHHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCCCHHHHHHHHHHHHHHHh-CC-CceeecCCCCcccccCC
Confidence 3689999999999987765421 00000000 01236788888877665544332 23 23369999999976543
No 115
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=53.92 E-value=50 Score=31.24 Aligned_cols=68 Identities=16% Similarity=0.115 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCCccEEeeccCCCc--------hhhHh--h-----------h-----------CCCCChHHHHHHHHHHH
Q 023712 121 NNIIDALLQKGIQPYVTLYHWDLP--------LHLHE--S-----------M-----------GGWLNKEIVKYFEIYAD 168 (278)
Q Consensus 121 ~~~i~~l~~~GI~pivtL~H~~~P--------~wl~~--~-----------~-----------ggw~~~~~~~~F~~ya~ 168 (278)
.++|++|+++|+++++.++-+-.+ ..-+. + + -.++||+..+.|.+..+
T Consensus 69 ~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~ 148 (339)
T cd06602 69 PEFVDELHANGQHYVPILDPAISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIK 148 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHH
Confidence 889999999999998887644322 11110 0 0 12568888888877777
Q ss_pred HHHHHhCCCcceEEEecCccc
Q 023712 169 TCFASFGDRVKNWITINEPLQ 189 (278)
Q Consensus 169 ~v~~~~gd~V~~w~t~NEP~~ 189 (278)
.+...+| -.-.|.=+|||..
T Consensus 149 ~~~~~~G-vdg~w~D~~Ep~~ 168 (339)
T cd06602 149 DFHDQVP-FDGLWIDMNEPSN 168 (339)
T ss_pred HHHhcCC-CcEEEecCCCCch
Confidence 6666554 2345888999964
No 116
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=53.71 E-value=90 Score=29.34 Aligned_cols=137 Identities=13% Similarity=0.091 Sum_probs=76.8
Q ss_pred ccccc---CCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCC---chh---------hHhh--h-CCCC-------
Q 023712 101 SRIFP---DGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL---PLH---------LHES--M-GGWL------- 155 (278)
Q Consensus 101 sRi~P---~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~---P~w---------l~~~--~-ggw~------- 155 (278)
.+..| ...+ -++.+-+..++++.+.++++|-+.++=|+|-+- +.+ .... . ....
T Consensus 63 ~~~~~~~~~~~~-~~~d~~i~~~~~l~~~vh~~G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~ 141 (338)
T cd04733 63 HLEEPGIIGNVV-LESGEDLEAFREWAAAAKANGALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTE 141 (338)
T ss_pred cccCCCcCCCcc-cCCHHHHHHHHHHHHHHHhcCCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCH
Confidence 45566 3336 678889999999999999999999999999321 100 0000 0 0011
Q ss_pred --ChHHHHHHHHHHHHHHHHhC-CCcceEEEecCcccccccCcccccc-CCCC--CCCCCchHHHHHHHHHHHHHHHHHH
Q 023712 156 --NKEIVKYFEIYADTCFASFG-DRVKNWITINEPLQTAVNGYCTGIF-APGR--HQHSSTEPYLVAHHQILAHAAAFSV 229 (278)
Q Consensus 156 --~~~~~~~F~~ya~~v~~~~g-d~V~~w~t~NEP~~~~~~gy~~g~~-~P~~--~~~~~~~~~~~~h~~l~AHa~a~~~ 229 (278)
-.++++.|++=|+.+ ++.| |-| .+-+-.||+...| .|.. +.+.. . -.+-|=+.--...++.
T Consensus 142 ~eI~~~i~~~~~aA~ra-~~aGfDgV---------eih~a~gyLl~qFlsp~~N~R~D~y-G--GslenR~rf~~EiI~a 208 (338)
T cd04733 142 EEIEDVIDRFAHAARLA-QEAGFDGV---------QIHAAHGYLLSQFLSPLTNKRTDEY-G--GSLENRARLLLEIYDA 208 (338)
T ss_pred HHHHHHHHHHHHHHHHH-HHcCCCEE---------EEchhhhhHHHHhcCCcCCCCCccC-C--CCHHHHHHHHHHHHHH
Confidence 124677777766554 4444 223 1334567876654 3432 11111 1 1233544545556777
Q ss_pred HHHHhcCCCCCeEEceecCceeee
Q 023712 230 YQRKYKDKQGGNIGLVVDCEWAEA 253 (278)
Q Consensus 230 ~r~~~~~~~~~~iGi~~~~~~~~p 253 (278)
+|+.. .++-.|++-++...+.+
T Consensus 209 IR~av--G~d~~v~vris~~~~~~ 230 (338)
T cd04733 209 IRAAV--GPGFPVGIKLNSADFQR 230 (338)
T ss_pred HHHHc--CCCCeEEEEEcHHHcCC
Confidence 77653 24567888887544333
No 117
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=53.69 E-value=26 Score=37.40 Aligned_cols=66 Identities=18% Similarity=0.201 Sum_probs=43.0
Q ss_pred cCcHHHHHHHHHcCCCeeeecccccccccCCCC------CCCChh--HHHHHHHHHHHHHhcCCccEEee--ccCC
Q 023712 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLG------TKINME--GITFYNNIIDALLQKGIQPYVTL--YHWD 142 (278)
Q Consensus 77 ~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G------~~~n~~--~l~~y~~~i~~l~~~GI~pivtL--~H~~ 142 (278)
....+-++.+++||++++=+|=-+.-.-....| ..+|++ +.+=+++++++++++||.+|+++ +|..
T Consensus 16 ~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a 91 (825)
T TIGR02401 16 DDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMA 91 (825)
T ss_pred HHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 346788999999999999777433211000011 012222 34568999999999999999975 4543
No 118
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=53.59 E-value=41 Score=31.73 Aligned_cols=71 Identities=25% Similarity=0.426 Sum_probs=47.6
Q ss_pred CccCCcc--cCcHHHHHHHHHcCCCeeeeccc-----------ccccccCC---------CCCCCChhHHHHHHHHHHHH
Q 023712 70 DVAVDHY--HRYKEDIDLIAKLGFDAYRFSIS-----------WSRIFPDG---------LGTKINMEGITFYNNIIDAL 127 (278)
Q Consensus 70 ~~a~d~y--~~y~eDi~l~k~lG~~~~R~si~-----------WsRi~P~~---------~G~~~n~~~l~~y~~~i~~l 127 (278)
|++-.|+ ...++-|+.|+..++|.+.+-++ ++.+-..+ .| .+.++ =++++++.+
T Consensus 9 D~aR~f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~-~YT~~---di~elv~yA 84 (329)
T cd06568 9 DVARHFFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGG-YYTQE---DYKDIVAYA 84 (329)
T ss_pred eccCCCcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCC-cCCHH---HHHHHHHHH
Confidence 3444444 34677799999999998776652 33332211 12 45553 468999999
Q ss_pred HhcCCccEEeeccCCCchhh
Q 023712 128 LQKGIQPYVTLYHWDLPLHL 147 (278)
Q Consensus 128 ~~~GI~pivtL~H~~~P~wl 147 (278)
+++||++|.-+ |+|...
T Consensus 85 ~~rgI~vIPEi---D~PGH~ 101 (329)
T cd06568 85 AERHITVVPEI---DMPGHT 101 (329)
T ss_pred HHcCCEEEEec---CCcHHH
Confidence 99999999877 667654
No 119
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=53.21 E-value=24 Score=37.87 Aligned_cols=55 Identities=24% Similarity=0.279 Sum_probs=41.2
Q ss_pred cCcHHHHHHHHHcCCCeeeeccc---------------ccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEee
Q 023712 77 HRYKEDIDLIAKLGFDAYRFSIS---------------WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (278)
Q Consensus 77 ~~y~eDi~l~k~lG~~~~R~si~---------------WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL 138 (278)
....+-+..+++||++++=+|=- +.+|.|.- | +.+=+++++++++++||.+|+++
T Consensus 20 ~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~l-G------t~e~f~~Lv~aah~~Gi~VIlDi 89 (879)
T PRK14511 20 DDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPEL-G------GEEGLRRLAAALRAHGMGLILDI 89 (879)
T ss_pred HHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCC-C------CHHHHHHHHHHHHHCCCEEEEEe
Confidence 44677889999999999876632 33344332 3 24568999999999999999985
No 120
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=53.15 E-value=1.1e+02 Score=28.70 Aligned_cols=39 Identities=33% Similarity=0.405 Sum_probs=32.3
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccC
Q 023712 102 RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW 141 (278)
Q Consensus 102 Ri~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~ 141 (278)
+..|...+ -++.+.+..++++.+.++++|-+.++=|+|.
T Consensus 62 ~~~~~~~~-~~~d~~~~~~~~l~~~vh~~G~~~~~QL~H~ 100 (336)
T cd02932 62 RITPGDLG-LWNDEQIEALKRIVDFIHSQGAKIGIQLAHA 100 (336)
T ss_pred CCCCCcee-ecCHHHHHHHHHHHHHHHhcCCcEEEEccCC
Confidence 44444335 6788899999999999999999999999994
No 121
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=53.11 E-value=49 Score=34.03 Aligned_cols=27 Identities=26% Similarity=0.529 Sum_probs=21.5
Q ss_pred cccCcHHH-----HHHHHHcCCCeeeeccccc
Q 023712 75 HYHRYKED-----IDLIAKLGFDAYRFSISWS 101 (278)
Q Consensus 75 ~y~~y~eD-----i~l~k~lG~~~~R~si~Ws 101 (278)
.|.+|.+| ++..++.|++.+|+..+.+
T Consensus 90 g~~~ypddvv~~~v~~a~~~Gid~~rifd~ln 121 (593)
T PRK14040 90 GYRHYADDVVERFVERAVKNGMDVFRVFDAMN 121 (593)
T ss_pred ccccCcHHHHHHHHHHHHhcCCCEEEEeeeCC
Confidence 46666666 9999999999999986443
No 122
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=52.91 E-value=49 Score=33.01 Aligned_cols=57 Identities=23% Similarity=0.317 Sum_probs=38.0
Q ss_pred CcccCcHHH-----HHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCc
Q 023712 74 DHYHRYKED-----IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (278)
Q Consensus 74 d~y~~y~eD-----i~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P 144 (278)
=.|..|.+| +++.++.|++.+|+.-. +|. ++-....|+.+++.|..+.+++.+=+.|
T Consensus 97 vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~------------lnd--~~n~~~ai~~ak~~G~~~~~~i~yt~sp 158 (468)
T PRK12581 97 LGYRHYADDIVDKFISLSAQNGIDVFRIFDA------------LND--PRNIQQALRAVKKTGKEAQLCIAYTTSP 158 (468)
T ss_pred cCccCCcchHHHHHHHHHHHCCCCEEEEccc------------CCC--HHHHHHHHHHHHHcCCEEEEEEEEEeCC
Confidence 357888889 89999999999997642 221 2344556666666666666666554444
No 123
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=52.61 E-value=36 Score=30.14 Aligned_cols=66 Identities=17% Similarity=0.184 Sum_probs=41.8
Q ss_pred ccCcHHHHHHHHHcCCCeeeecccccccccCCCC-CCCChhHHHHHHHHHHHHHhcCCccEEee-ccCCCc
Q 023712 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLG-TKINMEGITFYNNIIDALLQKGIQPYVTL-YHWDLP 144 (278)
Q Consensus 76 y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G-~~~n~~~l~~y~~~i~~l~~~GI~pivtL-~H~~~P 144 (278)
-+.+++-|++++++|.+.+|+..... |.... .......++..+++.+.+.+.||...+=. ++++.|
T Consensus 83 ~~~~~~~i~~a~~lg~~~i~~~~g~~---~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~ 150 (254)
T TIGR03234 83 REGVALAIAYARALGCPQVNCLAGKR---PAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMP 150 (254)
T ss_pred HHHHHHHHHHHHHhCCCEEEECcCCC---CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCC
Confidence 35567788999999999998654321 11100 01223345667888888999999877743 444444
No 124
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=52.44 E-value=35 Score=32.31 Aligned_cols=93 Identities=14% Similarity=0.178 Sum_probs=54.0
Q ss_pred cHHHHHHHHHcCCCeeeeccc-cc-ccccCCCCCCCChhHHHHHHHHHHHHHhcCCccE-EeeccCCCchhhHhhhCCCC
Q 023712 79 YKEDIDLIAKLGFDAYRFSIS-WS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLHLHESMGGWL 155 (278)
Q Consensus 79 y~eDi~l~k~lG~~~~R~si~-Ws-Ri~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pi-vtL~H~~~P~wl~~~~ggw~ 155 (278)
-++.++.|+++|++.+-++++ -+ ++...- |...+ .+-+.+.|+.+++.|+.++ ++|. +++|. .
T Consensus 99 t~e~l~~l~~~Gv~risiGvqS~~~~~l~~l-gR~~~---~~~~~~ai~~l~~~G~~~v~~dli-~GlPg---------q 164 (360)
T TIGR00539 99 TAEWCKGLKGAGINRLSLGVQSFRDDKLLFL-GRQHS---AKNIAPAIETALKSGIENISLDLM-YGLPL---------Q 164 (360)
T ss_pred CHHHHHHHHHcCCCEEEEecccCChHHHHHh-CCCCC---HHHHHHHHHHHHHcCCCeEEEecc-CCCCC---------C
Confidence 368899999999997666663 32 333222 31123 4567889999999999754 4443 45552 2
Q ss_pred ChHHHHHHHHHHHHHHHHhC-CCcceEEEecCccc
Q 023712 156 NKEIVKYFEIYADTCFASFG-DRVKNWITINEPLQ 189 (278)
Q Consensus 156 ~~~~~~~F~~ya~~v~~~~g-d~V~~w~t~NEP~~ 189 (278)
+ .+.+.+-.+.+.+ ++ +.+..+...=||..
T Consensus 165 t---~~~~~~~l~~~~~-l~~~~is~y~l~~~~gT 195 (360)
T TIGR00539 165 T---LNSLKEELKLAKE-LPINHLSAYALSVEPNT 195 (360)
T ss_pred C---HHHHHHHHHHHHc-cCCCEEEeecceEcCCC
Confidence 3 3344444444333 33 34555554445553
No 125
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=52.29 E-value=52 Score=31.49 Aligned_cols=73 Identities=26% Similarity=0.284 Sum_probs=52.9
Q ss_pred HHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhCCCCChHHHHHHH
Q 023712 85 LIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFE 164 (278)
Q Consensus 85 l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~ 164 (278)
...+.|+..+| |-| | .+-.+ +....+++.++++|+.+=+..+|-.+..-+.++|++-+.+..++--.
T Consensus 90 ~~~~~g~~k~R-------INP---G-Nig~~--~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky~~pt~ealveSAl 156 (361)
T COG0821 90 EAAECGVDKVR-------INP---G-NIGFK--DRVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKYGGPTPEALVESAL 156 (361)
T ss_pred HhhhcCcceEE-------ECC---c-ccCcH--HHHHHHHHHHHHcCCCEEEecccCchhHHHHHHhcCCCHHHHHHHHH
Confidence 33455566665 444 4 33322 37899999999999999999999999999999998765555566555
Q ss_pred HHHHHH
Q 023712 165 IYADTC 170 (278)
Q Consensus 165 ~ya~~v 170 (278)
++++.+
T Consensus 157 ~~a~~~ 162 (361)
T COG0821 157 EHAELL 162 (361)
T ss_pred HHHHHH
Confidence 666543
No 126
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=52.23 E-value=55 Score=30.95 Aligned_cols=93 Identities=16% Similarity=0.135 Sum_probs=55.3
Q ss_pred HHHHHHHHHcCCCeeeecc-ccc-ccccCCCCCCCChhHHHHHHHHHHHHHhcCCccE-EeeccCCCchhhHhhhCCCCC
Q 023712 80 KEDIDLIAKLGFDAYRFSI-SWS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLHLHESMGGWLN 156 (278)
Q Consensus 80 ~eDi~l~k~lG~~~~R~si-~Ws-Ri~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pi-vtL~H~~~P~wl~~~~ggw~~ 156 (278)
++.++.++++|++.+-+++ +-+ .+...- |...+ .+-..+.++.+++.|+..+ ++|. +++|. ++
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~L~~l-gR~~~---~~~~~~ai~~lr~~g~~~v~iDli-~GlPg---------qt 163 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDKLKFL-GRIHS---QKQIIKAIENAKKAGFENISIDLI-YDTPL---------DN 163 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHc-CCCCC---HHHHHHHHHHHHHcCCCEEEEEee-cCCCC---------CC
Confidence 6889999999999777776 332 232222 31223 3567889999999999854 6664 46662 22
Q ss_pred hHHHHHHHHHHHHHHHHhCCCcceEEEecCccc
Q 023712 157 KEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (278)
Q Consensus 157 ~~~~~~F~~ya~~v~~~~gd~V~~w~t~NEP~~ 189 (278)
.+.|.+-.+.+.+-=-+.|..+...=||+.
T Consensus 164 ---~~~~~~~l~~~~~l~~~~is~y~L~~~~gT 193 (350)
T PRK08446 164 ---KKLLKEELKLAKELPINHLSAYSLTIEENT 193 (350)
T ss_pred ---HHHHHHHHHHHHhcCCCEEEeccceecCCC
Confidence 344444444443322244555555556654
No 127
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=51.79 E-value=51 Score=33.38 Aligned_cols=105 Identities=16% Similarity=0.139 Sum_probs=60.1
Q ss_pred HHHHHHHHHcCCCeeeeccc--ccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhCCCCCh
Q 023712 80 KEDIDLIAKLGFDAYRFSIS--WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNK 157 (278)
Q Consensus 80 ~eDi~l~k~lG~~~~R~si~--WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~ 157 (278)
++.+++|+++|++.+-++++ -.++.-.- +...+ ++-..+.++.+++.|+++.+.|. +++|. .
T Consensus 206 ~e~L~~L~~~G~~rVslGVQS~~d~VL~~i-nRght---~~~v~~Ai~~lr~~G~~v~~~LM-~GLPg---------q-- 269 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQTIYNDILERT-KRGHT---VRDVVEATRLLRDAGLKVVYHIM-PGLPG---------S-- 269 (522)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHHHHh-CCCCC---HHHHHHHHHHHHHcCCeEEEEee-cCCCC---------C--
Confidence 68899999999997777763 33333221 10122 35567888899999998776664 45552 2
Q ss_pred HHHHHHHHHHHHHHH--HhC-CCcceEEEecCcccccccCccccccC
Q 023712 158 EIVKYFEIYADTCFA--SFG-DRVKNWITINEPLQTAVNGYCTGIFA 201 (278)
Q Consensus 158 ~~~~~F~~ya~~v~~--~~g-d~V~~w~t~NEP~~~~~~gy~~g~~~ 201 (278)
+.+.+.+=++.++. .++ |.|+.+-+.=.|+.....-|..|.|.
T Consensus 270 -t~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~ 315 (522)
T TIGR01211 270 -SFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYK 315 (522)
T ss_pred -CHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCC
Confidence 23444444455554 343 45666555445554333223344443
No 128
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=51.62 E-value=35 Score=35.71 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=36.6
Q ss_pred HHHHHHcCCCeeeecc--cccc--------------cccCCCCCCCChh-----HHHHHHHHHHHHHhcCCccEEeec
Q 023712 83 IDLIAKLGFDAYRFSI--SWSR--------------IFPDGLGTKINME-----GITFYNNIIDALLQKGIQPYVTLY 139 (278)
Q Consensus 83 i~l~k~lG~~~~R~si--~WsR--------------i~P~~~G~~~n~~-----~l~~y~~~i~~l~~~GI~pivtL~ 139 (278)
|+.+|+||++++-+.= +..- .-|... ..++.. .++=++++|++|+++||++|+++.
T Consensus 190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y-~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV 266 (688)
T TIGR02100 190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGF-FAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVV 266 (688)
T ss_pred hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccc-cccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 8899999999998762 2210 011100 011211 245689999999999999999854
No 129
>PRK12568 glycogen branching enzyme; Provisional
Probab=50.59 E-value=30 Score=36.48 Aligned_cols=95 Identities=23% Similarity=0.315 Sum_probs=55.7
Q ss_pred cHHH-HHHHHHcCCCeeeec-c-------cccccccCCCCCCCCh--hHHHHHHHHHHHHHhcCCccEEeec--cCCCch
Q 023712 79 YKED-IDLIAKLGFDAYRFS-I-------SWSRIFPDGLGTKINM--EGITFYNNIIDALLQKGIQPYVTLY--HWDLPL 145 (278)
Q Consensus 79 y~eD-i~l~k~lG~~~~R~s-i-------~WsRi~P~~~G~~~n~--~~l~~y~~~i~~l~~~GI~pivtL~--H~~~P~ 145 (278)
..+. |+.+|+||++++-+. | +|- ..|.+.- .++. -..+-++.+|++|+++||.+|+++. |+.--.
T Consensus 271 la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wG-Y~~~~~~-a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d~ 348 (730)
T PRK12568 271 LAEQLIPYVQQLGFTHIELLPITEHPFGGSWG-YQPLGLY-APTARHGSPDGFAQFVDACHRAGIGVILDWVSAHFPDDA 348 (730)
T ss_pred HHHHHHHHHHHcCCCEEEECccccCCCCCCCC-CCCCcCC-ccCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCccc
Confidence 3344 699999999999765 2 231 1111100 0110 0235689999999999999999854 432110
Q ss_pred ---------hhHh----h---hCCC-------CChHHHHHHHHHHHHHHHHhC
Q 023712 146 ---------HLHE----S---MGGW-------LNKEIVKYFEIYADTCFASFG 175 (278)
Q Consensus 146 ---------wl~~----~---~ggw-------~~~~~~~~F~~ya~~v~~~~g 175 (278)
.+.. . +..| .++++.+.+.+=+..-+++|+
T Consensus 349 ~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 349 HGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred cccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC
Confidence 0010 0 1123 356777888887787788875
No 130
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=50.12 E-value=1.1e+02 Score=28.51 Aligned_cols=79 Identities=11% Similarity=0.111 Sum_probs=47.5
Q ss_pred CChhHHHHHHHHHHHHHhcCCccEEeeccC---CCchhhHhh-----------------------hCCCCChHHHHHHHH
Q 023712 112 INMEGITFYNNIIDALLQKGIQPYVTLYHW---DLPLHLHES-----------------------MGGWLNKEIVKYFEI 165 (278)
Q Consensus 112 ~n~~~l~~y~~~i~~l~~~GI~pivtL~H~---~~P~wl~~~-----------------------~ggw~~~~~~~~F~~ 165 (278)
+|++.+---.++|++|+++|+++++.++-+ +.+.+-+-+ +-.+.||++.+.|.+
T Consensus 60 ~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~ 139 (319)
T cd06591 60 FDPERFPDPKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWK 139 (319)
T ss_pred EChhhCCCHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHH
Confidence 454444455789999999999988876422 112110000 012568888887766
Q ss_pred HHHHHHHHhCCCcceEEEecCccccc
Q 023712 166 YADTCFASFGDRVKNWITINEPLQTA 191 (278)
Q Consensus 166 ya~~v~~~~gd~V~~w~t~NEP~~~~ 191 (278)
..+..+...| ---.|+=+|||....
T Consensus 140 ~~~~~~~~~G-vdg~w~D~~Ep~~~~ 164 (319)
T cd06591 140 QLKKNYYDKG-VDAWWLDAAEPEYSV 164 (319)
T ss_pred HHHHHhhcCC-CcEEEecCCCCCccC
Confidence 5554444443 244588999998653
No 131
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=49.35 E-value=76 Score=33.79 Aligned_cols=104 Identities=16% Similarity=0.252 Sum_probs=66.7
Q ss_pred HHHHHHHcCCC--eeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeec---cCCCch-----------
Q 023712 82 DIDLIAKLGFD--AYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY---HWDLPL----------- 145 (278)
Q Consensus 82 Di~l~k~lG~~--~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~---H~~~P~----------- 145 (278)
-++.+.++|+. ..=..|.|-.=..+= .+|+...-...++++.|+++|++.++.+. +-+...
T Consensus 316 vv~~~~~agiPld~~~~DiDyMd~ykDF---Tvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g~~~~v 392 (805)
T KOG1065|consen 316 VVENYRAAGIPLDVIVIDIDYMDGYKDF---TVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRGVAKDV 392 (805)
T ss_pred HHHHHHHcCCCcceeeeehhhhhcccce---eeccccCcchHHHHHHHHhCCCeEEEEeCCccccCccchhhhhhhhhce
Confidence 36778888877 666666665433321 46666666788999999999999999886 222220
Q ss_pred hhHhhh----------CC------CCChHHHHHHHHHHHHHHHHhCCCcc---eEEEecCcccccc
Q 023712 146 HLHESM----------GG------WLNKEIVKYFEIYADTCFASFGDRVK---NWITINEPLQTAV 192 (278)
Q Consensus 146 wl~~~~----------gg------w~~~~~~~~F~~ya~~v~~~~gd~V~---~w~t~NEP~~~~~ 192 (278)
++.+.+ .| ++|+++++ ++...+++|.+.+. +|+-+|||.-.+.
T Consensus 393 ~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~----Ww~~~~~~fh~~vp~dg~wiDmnE~snf~~ 454 (805)
T KOG1065|consen 393 LIKNREGSPKMLGEVWPGSTAFPDFTNPAVVE----WWLDELKRFHDEVPFDGFWIDMNEPSNFPS 454 (805)
T ss_pred eeecccCchhhhcccCCCcccccccCCchHHH----HHHHHHHhhcccCCccceEEECCCcccCCC
Confidence 111100 12 45664444 44455668888776 5999999976653
No 132
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=49.18 E-value=28 Score=33.79 Aligned_cols=59 Identities=22% Similarity=0.307 Sum_probs=39.2
Q ss_pred HHHHHHHHcCCCeeeecc---c---ccccccCCCCCCCCh--hHHHHHHHHHHHHHhcCCccEEee--cc
Q 023712 81 EDIDLIAKLGFDAYRFSI---S---WSRIFPDGLGTKINM--EGITFYNNIIDALLQKGIQPYVTL--YH 140 (278)
Q Consensus 81 eDi~l~k~lG~~~~R~si---~---WsRi~P~~~G~~~n~--~~l~~y~~~i~~l~~~GI~pivtL--~H 140 (278)
+-++.+++||++++=++= + +.+.-....- .+|+ -.++-.++++++++++||++++++ +|
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~-~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V~NH 101 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYT-KVDPHFGTEEDFKELVEEAHKRGIKVILDLVFNH 101 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchh-hcCcccCCHHHHHHHHHHHHHCCCEEEEEeccCc
Confidence 668999999999996652 1 1111111000 1221 246778999999999999999987 55
No 133
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=48.41 E-value=75 Score=29.00 Aligned_cols=61 Identities=11% Similarity=0.124 Sum_probs=45.7
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCC-CCCCCChhHHHHHHHHHHHHHhcCCccEEeeccC
Q 023712 80 KEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW 141 (278)
Q Consensus 80 ~eDi~l~k~lG~~~~R~si~WsRi~P~~-~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~ 141 (278)
+.+++.+++.|++.+|+.++=|.+.-.. .| .-.++.++...+.++.+++.|+++.++.-+|
T Consensus 81 ~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~-~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~ 142 (273)
T cd07941 81 DPNLQALLEAGTPVVTIFGKSWDLHVTEALG-TTLEENLAMIRDSVAYLKSHGREVIFDAEHF 142 (273)
T ss_pred hHHHHHHHhCCCCEEEEEEcCCHHHHHHHcC-CCHHHHHHHHHHHHHHHHHcCCeEEEeEEec
Confidence 3689999999999999988654432221 13 2235678899999999999999998866555
No 134
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=47.74 E-value=1.2e+02 Score=28.66 Aligned_cols=126 Identities=13% Similarity=0.095 Sum_probs=72.1
Q ss_pred CCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchh----------hHhhhCC-----CC---ChHHHHHHHHHHHHHHH
Q 023712 111 KINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLH----------LHESMGG-----WL---NKEIVKYFEIYADTCFA 172 (278)
Q Consensus 111 ~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~w----------l~~~~gg-----w~---~~~~~~~F~~ya~~v~~ 172 (278)
-++.+.+..++++.+.++++|-.+++=|+|.+.-.. ......+ .+ -.++++.|++=|+.+.+
T Consensus 74 ~~~d~~i~~~r~l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~ 153 (337)
T PRK13523 74 IWDDEHIEGLHKLVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAKE 153 (337)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 568888999999999999999999999999543110 0000000 01 12678888886666544
Q ss_pred HhC-CCcceEEEecCcccccccCcccccc-CCCC--CCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEceecC
Q 023712 173 SFG-DRVKNWITINEPLQTAVNGYCTGIF-APGR--HQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDC 248 (278)
Q Consensus 173 ~~g-d~V~~w~t~NEP~~~~~~gy~~g~~-~P~~--~~~~~~~~~~~~h~~l~AHa~a~~~~r~~~~~~~~~~iGi~~~~ 248 (278)
-| |-|. +-+-.||+...| .|.. +.+..- -.+-|-++--...++.+|+.. +..||+-++.
T Consensus 154 -aGfDgVe---------ih~ahGyLl~qFlSp~~N~RtD~yG---GslenR~Rf~~eii~~ir~~~----~~~v~vRis~ 216 (337)
T PRK13523 154 -AGFDVIE---------IHGAHGYLINEFLSPLSNKRTDEYG---GSPENRYRFLREIIDAVKEVW----DGPLFVRISA 216 (337)
T ss_pred -cCCCEEE---------EccccchHHHHhcCCccCCcCCCCC---CCHHHHHHHHHHHHHHHHHhc----CCCeEEEecc
Confidence 33 3332 335567876544 3422 111111 123444444555666677642 4568887776
Q ss_pred ceeee
Q 023712 249 EWAEA 253 (278)
Q Consensus 249 ~~~~p 253 (278)
..+.+
T Consensus 217 ~d~~~ 221 (337)
T PRK13523 217 SDYHP 221 (337)
T ss_pred cccCC
Confidence 54333
No 135
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=47.66 E-value=34 Score=31.70 Aligned_cols=69 Identities=17% Similarity=0.297 Sum_probs=47.1
Q ss_pred cHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhCCCCChH
Q 023712 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKE 158 (278)
Q Consensus 79 y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~ 158 (278)
.++-+++++++|++.+.+++- + .-+++.+++|+++++.+.+++| +|++|=-..|.-+...|.-..+.+
T Consensus 108 ~~~~f~~~~~~Gv~GvKidF~---------~-~d~Q~~v~~y~~i~~~AA~~~L--mvnfHg~~kPtG~~RTyPN~mT~E 175 (273)
T PF10566_consen 108 LDEAFKLYAKWGVKGVKIDFM---------D-RDDQEMVNWYEDILEDAAEYKL--MVNFHGATKPTGLRRTYPNLMTRE 175 (273)
T ss_dssp HHHHHHHHHHCTEEEEEEE-----------S-STSHHHHHHHHHHHHHHHHTT---EEEETTS---TTHHHCSTTEEEE-
T ss_pred HHHHHHHHHHcCCCEEeeCcC---------C-CCCHHHHHHHHHHHHHHHHcCc--EEEecCCcCCCcccccCccHHHHH
Confidence 366689999999999999863 2 3478889999999999999975 566665566766665554444444
Q ss_pred H
Q 023712 159 I 159 (278)
Q Consensus 159 ~ 159 (278)
.
T Consensus 176 g 176 (273)
T PF10566_consen 176 G 176 (273)
T ss_dssp -
T ss_pred H
Confidence 3
No 136
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=47.47 E-value=1.1e+02 Score=29.67 Aligned_cols=51 Identities=16% Similarity=0.316 Sum_probs=40.5
Q ss_pred cCcHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEee
Q 023712 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (278)
Q Consensus 77 ~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL 138 (278)
..|++||++.+++|++.|=+.|- .. . ..+. +....+++.+.+.|.+.++.+
T Consensus 17 ~dw~~di~~A~~~GIDgFaLNig------~~-d-~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 17 EDWEADIRLAQAAGIDGFALNIG------SS-D-SWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred HHHHHHHHHHHHcCCCEEEEecc------cC-C-cccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 45899999999999999999886 11 2 3443 567888899999998888877
No 137
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=47.26 E-value=52 Score=37.98 Aligned_cols=66 Identities=20% Similarity=0.192 Sum_probs=42.8
Q ss_pred cCcHHHHHHHHHcCCCeeeecccccccccCCCC------CCCChh--HHHHHHHHHHHHHhcCCccEEee--ccCC
Q 023712 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLG------TKINME--GITFYNNIIDALLQKGIQPYVTL--YHWD 142 (278)
Q Consensus 77 ~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G------~~~n~~--~l~~y~~~i~~l~~~GI~pivtL--~H~~ 142 (278)
....+-++.+++||++++=+|=-+.-.--...| ..+|++ +.+=+++++++|+++||.+|+++ +|..
T Consensus 758 ~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~NH~~ 833 (1693)
T PRK14507 758 ADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVPNHMG 833 (1693)
T ss_pred HHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecccccC
Confidence 345566899999999999777433311000001 112322 34568999999999999999985 4653
No 138
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=47.12 E-value=61 Score=30.09 Aligned_cols=62 Identities=23% Similarity=0.235 Sum_probs=44.5
Q ss_pred cHHHHHHHHHcCCCeeeecc----cccccccCC---CCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhH
Q 023712 79 YKEDIDLIAKLGFDAYRFSI----SWSRIFPDG---LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLH 148 (278)
Q Consensus 79 y~eDi~l~k~lG~~~~R~si----~WsRi~P~~---~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~ 148 (278)
.++-|++|+.+|+|.+-+=+ .++. .|.- .| .+.++. ++++++.++++||++|..+ |+|..+.
T Consensus 19 lk~~id~ma~~k~N~l~lhl~D~f~~~~-~p~~~~~~~-~yT~~e---i~ei~~yA~~~gI~vIPei---d~pGH~~ 87 (301)
T cd06565 19 LKKLLRLLALLGANGLLLYYEDTFPYEG-EPEVGRMRG-AYTKEE---IREIDDYAAELGIEVIPLI---QTLGHLE 87 (301)
T ss_pred HHHHHHHHHHcCCCEEEEEEecceecCC-CcccccCCC-CcCHHH---HHHHHHHHHHcCCEEEecC---CCHHHHH
Confidence 67889999999999887643 2221 1221 25 677654 6899999999999999887 5565443
No 139
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=47.10 E-value=1.5e+02 Score=27.97 Aligned_cols=132 Identities=14% Similarity=0.048 Sum_probs=73.1
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCC---------chhhHhhhCC-----CCC---hHHHHHHHH
Q 023712 103 IFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL---------PLHLHESMGG-----WLN---KEIVKYFEI 165 (278)
Q Consensus 103 i~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~---------P~wl~~~~gg-----w~~---~~~~~~F~~ 165 (278)
..|...+ -.+++.+..++++++.++++|-+.++=|.|.+. |.-......+ ... .++++.|++
T Consensus 63 ~~~~~~~-~~~~~~i~~~~~l~~~vh~~g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~ 141 (353)
T cd02930 63 LGPGGPV-LNSPRQAAGHRLITDAVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFAR 141 (353)
T ss_pred CCCCCcc-cCCHHHHHHHHHHHHHHHHcCCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 3443235 568889999999999999999999999999543 1100000000 111 356777777
Q ss_pred HHHHHHHHhCCCcceEEEecCcccccccCcccccc-CCCC--CCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeE
Q 023712 166 YADTCFASFGDRVKNWITINEPLQTAVNGYCTGIF-APGR--HQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNI 242 (278)
Q Consensus 166 ya~~v~~~~gd~V~~w~t~NEP~~~~~~gy~~g~~-~P~~--~~~~~~~~~~~~h~~l~AHa~a~~~~r~~~~~~~~~~i 242 (278)
=|+.+.+.=-|-|. +..-.||+...| .|.. +.+..- -.+-|-+.--...++.+|+.. ..+..|
T Consensus 142 aA~~a~~aGfDgVe---------ih~ahGyLl~qFlsp~~N~RtD~yG---GslenR~r~~~eiv~aIR~~v--G~d~~v 207 (353)
T cd02930 142 CAALAREAGYDGVE---------IMGSEGYLINQFLAPRTNKRTDEWG---GSFENRMRFPVEIVRAVRAAV--GEDFII 207 (353)
T ss_pred HHHHHHHcCCCEEE---------EecccchHHHHhcCCccCCCcCccC---CCHHHHhHHHHHHHHHHHHHc--CCCceE
Confidence 66655443223342 234567776654 3421 111111 113344444456677777754 245567
Q ss_pred EceecCc
Q 023712 243 GLVVDCE 249 (278)
Q Consensus 243 Gi~~~~~ 249 (278)
++-++..
T Consensus 208 ~iRi~~~ 214 (353)
T cd02930 208 IYRLSML 214 (353)
T ss_pred EEEeccc
Confidence 7776644
No 140
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=46.83 E-value=38 Score=34.68 Aligned_cols=94 Identities=17% Similarity=0.219 Sum_probs=54.0
Q ss_pred HHHHHHHcCCCeeeec-c-ccccc-------------ccCCC----C-CCCCh----hHHHHHHHHHHHHHhcCCccEEe
Q 023712 82 DIDLIAKLGFDAYRFS-I-SWSRI-------------FPDGL----G-TKINM----EGITFYNNIIDALLQKGIQPYVT 137 (278)
Q Consensus 82 Di~l~k~lG~~~~R~s-i-~WsRi-------------~P~~~----G-~~~n~----~~l~~y~~~i~~l~~~GI~pivt 137 (278)
-++-+++||++++-+. | +..-+ -|... + ...|+ ...+=++++|++|+++||++|++
T Consensus 169 ~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilD 248 (605)
T TIGR02104 169 GLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIMD 248 (605)
T ss_pred HHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEE
Confidence 3899999999999876 2 22111 01000 0 00011 11356899999999999999997
Q ss_pred ec--cCC----------CchhhHh--h------hCCC------CChHHHHHHHHHHHHHHHHhC
Q 023712 138 LY--HWD----------LPLHLHE--S------MGGW------LNKEIVKYFEIYADTCFASFG 175 (278)
Q Consensus 138 L~--H~~----------~P~wl~~--~------~ggw------~~~~~~~~F~~ya~~v~~~~g 175 (278)
+. |.. .|.|... . +.|+ .++.+.+.+.+-++.-+++||
T Consensus 249 vV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~~ 312 (605)
T TIGR02104 249 VVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKEYN 312 (605)
T ss_pred EEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHHcC
Confidence 53 532 1322210 0 1122 256666777777776667665
No 141
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=46.37 E-value=1.2e+02 Score=28.86 Aligned_cols=60 Identities=15% Similarity=0.304 Sum_probs=49.8
Q ss_pred HHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCch
Q 023712 82 DIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPL 145 (278)
Q Consensus 82 Di~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~ 145 (278)
+.+.+|++|.+++.|=+-|. |+++- .+|..-.++.+++.++|++.||--++-+..+|.+.
T Consensus 111 s~~rike~GadavK~Llyy~---pD~~~-ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~~ 170 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYYD---VDDAE-EINIQKKAYIERIGSECVAEDIPFFLEVLTYDDNI 170 (325)
T ss_pred cHHHHHHhCCCeEEEEEEeC---CCCCh-HHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCCC
Confidence 47899999999999988765 33323 68888899999999999999999999988776543
No 142
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=45.89 E-value=77 Score=31.40 Aligned_cols=92 Identities=12% Similarity=0.027 Sum_probs=56.4
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCch----hhHh---h--
Q 023712 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPL----HLHE---S-- 150 (278)
Q Consensus 80 ~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~----wl~~---~-- 150 (278)
++|++...+.|++.+|+.++-+.+ .-..+.|+.+++.|+.+.+++..-+-|. .+.+ +
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~--------------~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~ 164 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDALNDV--------------RNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQ 164 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcH--------------HHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHH
Confidence 566799999999999998764433 1245577888888887776665544451 1111 0
Q ss_pred -----------hCCCCChHHHHHHHHHHHHHHHHhCCCcceEEEecCccc
Q 023712 151 -----------MGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (278)
Q Consensus 151 -----------~ggw~~~~~~~~F~~ya~~v~~~~gd~V~~w~t~NEP~~ 189 (278)
-.|..+|..+ .+..+.+-++++ ..-...+.|-..+
T Consensus 165 ~~Gad~I~i~Dt~G~l~P~~v---~~lv~alk~~~~-~pi~~H~Hnt~Gl 210 (448)
T PRK12331 165 EMGADSICIKDMAGILTPYVA---YELVKRIKEAVT-VPLEVHTHATSGI 210 (448)
T ss_pred HcCCCEEEEcCCCCCCCHHHH---HHHHHHHHHhcC-CeEEEEecCCCCc
Confidence 1455665433 445555556664 2234667777665
No 143
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=45.72 E-value=69 Score=28.51 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhCCCCChHHHHHHHHHHHHHHHHhC
Q 023712 117 ITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFG 175 (278)
Q Consensus 117 l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v~~~~g 175 (278)
++...+.|..|+++|+++++++.-+.....+ ....+++..+.|++-...++.+||
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~----~~~~~~~~~~~fa~~l~~~v~~yg 104 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNHLGAGF----ANNLSDAAAKAYAKAIVDTVDKYG 104 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCCCCCCc----cccCCHHHHHHHHHHHHHHHHHhC
Confidence 3566788999999999999999754432211 011445556666666666667775
No 144
>PLN02960 alpha-amylase
Probab=45.55 E-value=37 Score=36.50 Aligned_cols=94 Identities=11% Similarity=0.269 Sum_probs=58.0
Q ss_pred cccCcHHH-HHHHHHcCCCeeeec-cc-------cc-------ccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEee
Q 023712 75 HYHRYKED-IDLIAKLGFDAYRFS-IS-------WS-------RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (278)
Q Consensus 75 ~y~~y~eD-i~l~k~lG~~~~R~s-i~-------Ws-------Ri~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL 138 (278)
-|.-..+. ++.+++||++++-+. |. |- .+.|.- | ..+=++.+|++|+++||.+|+++
T Consensus 414 tf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~y-G------tp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 414 SFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRF-G------TPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCccccc-C------CHHHHHHHHHHHHHCCCEEEEEe
Confidence 34444444 899999999998875 21 11 111110 2 13457999999999999999987
Q ss_pred --ccCCC--c--hhhHh-----------h--hCCC-------CChHHHHHHHHHHHHHHHHhC
Q 023712 139 --YHWDL--P--LHLHE-----------S--MGGW-------LNKEIVKYFEIYADTCFASFG 175 (278)
Q Consensus 139 --~H~~~--P--~wl~~-----------~--~ggw-------~~~~~~~~F~~ya~~v~~~~g 175 (278)
.|+.. + .+..+ . +..| .++++.+.+.+=++.-+++|+
T Consensus 487 V~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Eyh 549 (897)
T PLN02960 487 VHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYR 549 (897)
T ss_pred cccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 34321 1 01000 0 0112 256788888888888888886
No 145
>PRK01060 endonuclease IV; Provisional
Probab=44.88 E-value=1.4e+02 Score=26.71 Aligned_cols=51 Identities=14% Similarity=0.162 Sum_probs=37.0
Q ss_pred cHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccE
Q 023712 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY 135 (278)
Q Consensus 79 y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pi 135 (278)
+++-++.++++|++.+=+.+.-++.... + .++.+. .+++-+.+.++||++.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~--~-~~~~~~---~~~lk~~~~~~gl~~~ 64 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKR--K-PLEELN---IEAFKAACEKYGISPE 64 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcC--C-CCCHHH---HHHHHHHHHHcCCCCC
Confidence 7888999999999999998776655432 2 456543 4555566779999853
No 146
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=44.72 E-value=78 Score=33.66 Aligned_cols=101 Identities=20% Similarity=0.315 Sum_probs=62.3
Q ss_pred cCCCeeeeccc-ccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccC---CCchh--hHhh------------
Q 023712 89 LGFDAYRFSIS-WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW---DLPLH--LHES------------ 150 (278)
Q Consensus 89 lG~~~~R~si~-WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~---~~P~w--l~~~------------ 150 (278)
+=++++++++. |.+ .-+. ..+|+.-+---+.+|+.|+++||+.++.+... |.|.. +.++
T Consensus 294 IP~d~~~lD~~~~~~--~~~~-F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~~ 370 (772)
T COG1501 294 IPLDVFVLDIDFWMD--NWGD-FTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEIY 370 (772)
T ss_pred CcceEEEEeehhhhc--cccc-eEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCEe
Confidence 34678999995 886 2221 13444444445699999999999999987642 33322 1111
Q ss_pred ----------hCCCCChHHHHHHHHHHHHHHHHhCCCcceEEEecCccccccc
Q 023712 151 ----------MGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVN 193 (278)
Q Consensus 151 ----------~ggw~~~~~~~~F~~ya~~v~~~~gd~V~~w~t~NEP~~~~~~ 193 (278)
+-.++||+..+.+.+....-...+| -.-+|.=+|||......
T Consensus 371 ~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~G-v~g~W~D~nEp~~~~~~ 422 (772)
T COG1501 371 QADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLG-VDGFWNDMNEPEPFDGD 422 (772)
T ss_pred eecccCCcccccCCCCHHHHHHHHHHHHhHHHhcC-ccEEEccCCCCcccccc
Confidence 0126789999888863322233332 35568899999986543
No 147
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=44.49 E-value=1.1e+02 Score=29.62 Aligned_cols=108 Identities=19% Similarity=0.242 Sum_probs=63.8
Q ss_pred cHHHHHHHHHcCCC--eeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccC---CCc---hhhHhh
Q 023712 79 YKEDIDLIAKLGFD--AYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW---DLP---LHLHES 150 (278)
Q Consensus 79 y~eDi~l~k~lG~~--~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~---~~P---~wl~~~ 150 (278)
..+-++.+++.|+. ++=++..|..-... - .+|++.+.-.+++++.|+++|+++++.++-+ +.+ ..-..+
T Consensus 45 v~~~i~~~~~~~iP~d~~~iD~~~~~~~~~--f-~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~ 121 (441)
T PF01055_consen 45 VREVIDRYRSNGIPLDVIWIDDDYQDGYGD--F-TWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEAK 121 (441)
T ss_dssp HHHHHHHHHHTT--EEEEEE-GGGSBTTBT--T--B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHHH
T ss_pred HHHHHHHHHHcCCCccceeccccccccccc--c-ccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhHh
Confidence 35567778887766 44455556553321 2 5666555567899999999999988766532 222 111000
Q ss_pred ---h-----CC----------------CCChHHHHHHHHHHHHHHHHhCCCcceEEEecCcccc
Q 023712 151 ---M-----GG----------------WLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQT 190 (278)
Q Consensus 151 ---~-----gg----------------w~~~~~~~~F~~ya~~v~~~~gd~V~~w~t~NEP~~~ 190 (278)
+ .| +.+++..+.|.+..+.+...+| .--+|+=+|||..+
T Consensus 122 ~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G-vdg~w~D~~E~~~~ 184 (441)
T PF01055_consen 122 EKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYG-VDGWWLDFGEPSSF 184 (441)
T ss_dssp HTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST--SEEEEESTTTBSS
T ss_pred hcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccC-CceEEeecCCcccc
Confidence 0 11 6788888888887777766654 23358889999974
No 148
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=43.58 E-value=93 Score=30.58 Aligned_cols=88 Identities=13% Similarity=0.122 Sum_probs=56.4
Q ss_pred HHHHHHHHHcCCCeeeecc--cccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccE-EeeccCCCchh--hHhhhCCC
Q 023712 80 KEDIDLIAKLGFDAYRFSI--SWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLH--LHESMGGW 154 (278)
Q Consensus 80 ~eDi~l~k~lG~~~~R~si--~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pi-vtL~H~~~P~w--l~~~~ggw 154 (278)
.+|++.+.++.--.-|+++ .|. . +|.+.++ +.++++||..- ++...|..|+- -.=++|..
T Consensus 73 i~D~~~v~~Lt~~~~~v~LH~~wd-------~--vD~~elk------~~A~e~GL~lda~Npn~Fs~~~~q~~~yk~GSL 137 (412)
T TIGR02629 73 LEDCAVIQQLTRATPNVSLHIPWD-------K--ADPKELK------ARGSALGLGFDAMNSNTFSDAPGQAHSYKFGSL 137 (412)
T ss_pred HHHHHHHHhhcCCCCCccccCCCC-------c--CCHHHHH------HHHHHcCCccceeccccccCccccccccccccc
Confidence 5788888888877777775 671 2 4655555 88999999998 77777766632 11134667
Q ss_pred CChH--HHHHHHHHHHH---HHHHhCCC-cceEE
Q 023712 155 LNKE--IVKYFEIYADT---CFASFGDR-VKNWI 182 (278)
Q Consensus 155 ~~~~--~~~~F~~ya~~---v~~~~gd~-V~~w~ 182 (278)
.||+ +.+.-.+-+.. +.+..|.. |..|+
T Consensus 138 tnPD~~VR~~AIeh~~~~i~Ig~elGs~~v~IW~ 171 (412)
T TIGR02629 138 SHTDAATRRQAVEHNLECIEIGKALGSKALTVWI 171 (412)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEEC
Confidence 7653 44444455444 45777765 44454
No 149
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=42.79 E-value=74 Score=28.43 Aligned_cols=46 Identities=13% Similarity=0.157 Sum_probs=28.9
Q ss_pred cccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCc
Q 023712 97 SISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (278)
Q Consensus 97 si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P 144 (278)
.+.|..+.++|.- .... .......+++.++++|+++++.+..++..
T Consensus 27 ~~~f~~i~~~G~l-~~~~-~~~~~~~~~~~~~~~~~kvl~sigg~~~~ 72 (253)
T cd06545 27 NLAFANPDANGTL-NANP-VRSELNSVVNAAHAHNVKILISLAGGSPP 72 (253)
T ss_pred EEEEEEECCCCeE-EecC-cHHHHHHHHHHHHhCCCEEEEEEcCCCCC
Confidence 3456666555421 1111 12356788999999999999998766543
No 150
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=42.65 E-value=1.7e+02 Score=26.33 Aligned_cols=92 Identities=16% Similarity=0.125 Sum_probs=56.9
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeecc--CCCchhhHhh------h
Q 023712 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYH--WDLPLHLHES------M 151 (278)
Q Consensus 80 ~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H--~~~P~wl~~~------~ 151 (278)
.+|++...+.|++.+|+.++-+.+ .-..+.++.+++.|+++.+++.. ...|..+.+. .
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~--------------~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEA--------------DVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESY 153 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhH--------------HHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHc
Confidence 699999999999999988765533 12466788888888888877732 2233333210 0
Q ss_pred ----------CCCCChHHHHHHHHHHHHHHHHhCCCcc-eEEEecCccc
Q 023712 152 ----------GGWLNKEIVKYFEIYADTCFASFGDRVK-NWITINEPLQ 189 (278)
Q Consensus 152 ----------ggw~~~~~~~~F~~ya~~v~~~~gd~V~-~w~t~NEP~~ 189 (278)
-|-.. ++.+.++.+.+-++++. ++ .+..-|-..+
T Consensus 154 G~d~i~l~DT~G~~~---P~~v~~lv~~l~~~~~~-~~l~~H~Hn~~Gl 198 (263)
T cd07943 154 GADCVYVTDSAGAML---PDDVRERVRALREALDP-TPVGFHGHNNLGL 198 (263)
T ss_pred CCCEEEEcCCCCCcC---HHHHHHHHHHHHHhCCC-ceEEEEecCCcch
Confidence 23344 44555666666677764 22 2455565553
No 151
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=41.92 E-value=63 Score=29.97 Aligned_cols=73 Identities=14% Similarity=0.001 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhCCCCChHHHHHHHHHHHHHHHHhCCCcceEEEecCcccccccCcc
Q 023712 117 ITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYC 196 (278)
Q Consensus 117 l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v~~~~gd~V~~w~t~NEP~~~~~~gy~ 196 (278)
++-+.+.++.++++||++.+++. +++|. . +.+.+.+=++.+.+-=-+.|......-+|+.....-|.
T Consensus 162 ~~~~~~ai~~l~~~gi~v~~~lI-~GlPg---------e---t~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~ 228 (302)
T TIGR01212 162 FACYVDAVKRARKRGIKVCSHVI-LGLPG---------E---DREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYE 228 (302)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEE-ECCCC---------C---CHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHH
Confidence 45678899999999999777664 35552 2 24555555555544333568888888888876555555
Q ss_pred ccccCC
Q 023712 197 TGIFAP 202 (278)
Q Consensus 197 ~g~~~P 202 (278)
.|.+.|
T Consensus 229 ~g~~~~ 234 (302)
T TIGR01212 229 KGELKT 234 (302)
T ss_pred cCCCCC
Confidence 666654
No 152
>PRK12677 xylose isomerase; Provisional
Probab=41.66 E-value=2.3e+02 Score=27.33 Aligned_cols=90 Identities=20% Similarity=0.213 Sum_probs=53.4
Q ss_pred cHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccE-EeeccCCCchhhHhhhCCCCCh
Q 023712 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLHLHESMGGWLNK 157 (278)
Q Consensus 79 y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pi-vtL~H~~~P~wl~~~~ggw~~~ 157 (278)
..|-++.++++|++.+=+. -..+.|-. ....+--+..+++-..+.+.||++. ++...|..|.+ +.|++.++
T Consensus 33 ~~E~v~~~a~~Gf~gVElh--~~~l~p~~---~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~---~~g~lts~ 104 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFH--DDDLVPFG---ATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVF---KDGAFTSN 104 (384)
T ss_pred HHHHHHHHHHhCCCEEEec--ccccCCCC---CChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccc---cCCcCCCC
Confidence 5788999999999988552 23355542 1111111357788888999999976 55555555543 23778764
Q ss_pred H-HHHHH-HHHHHH---HHHHhCC
Q 023712 158 E-IVKYF-EIYADT---CFASFGD 176 (278)
Q Consensus 158 ~-~~~~F-~~ya~~---v~~~~gd 176 (278)
+ .+..+ .++.+. ++..+|-
T Consensus 105 d~~~R~~Ai~~~~r~IdlA~eLGa 128 (384)
T PRK12677 105 DRDVRRYALRKVLRNIDLAAELGA 128 (384)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3 22222 334433 3556664
No 153
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=41.23 E-value=1.5e+02 Score=26.65 Aligned_cols=54 Identities=11% Similarity=0.111 Sum_probs=32.4
Q ss_pred cCcHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhc-CCccEE
Q 023712 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQK-GIQPYV 136 (278)
Q Consensus 77 ~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~-GI~piv 136 (278)
..+++.+++++++|++.+=+.+......+.. ..+. +..+++.+.+.++ |+...+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~---~~~~---~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSR---PLKK---ERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC---CCCH---HHHHHHHHHHHHcCCCcEEE
Confidence 5678888888888888887777654433322 2233 3445555555566 544433
No 154
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=41.04 E-value=84 Score=33.02 Aligned_cols=50 Identities=14% Similarity=0.208 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcCCccEEeeccCCCchhhHhhhCCCCChHHHHHHHHHHHHH
Q 023712 120 YNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTC 170 (278)
Q Consensus 120 y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v 170 (278)
...+++.|+++|+..=+..+|-.++.-+..+||. +....++.-.+|++.|
T Consensus 212 f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGd-tp~gmVeSAle~~~i~ 261 (733)
T PLN02925 212 FTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARIC 261 (733)
T ss_pred HHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCC-ChHHHHHHHHHHHHHH
Confidence 3459999999999999999999999999999875 4334566555555544
No 155
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=40.87 E-value=2.1e+02 Score=27.07 Aligned_cols=94 Identities=13% Similarity=0.049 Sum_probs=62.4
Q ss_pred cHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEee--ccCCCchhhHhh------
Q 023712 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL--YHWDLPLHLHES------ 150 (278)
Q Consensus 79 y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL--~H~~~P~wl~~~------ 150 (278)
..+|++...+.|++.+|+....+.. +-..+.|+.+++.|+++.+++ .|...|..+.+.
T Consensus 89 ~~~dl~~a~~~gvd~iri~~~~~e~--------------d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~ 154 (333)
T TIGR03217 89 TVHDLKAAYDAGARTVRVATHCTEA--------------DVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMES 154 (333)
T ss_pred CHHHHHHHHHCCCCEEEEEeccchH--------------HHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHh
Confidence 3689999999999999988743322 234688999999999988777 454445544331
Q ss_pred h----------CCCCChHHHHHHHHHHHHHHHHhCCCcce-EEEecCccc
Q 023712 151 M----------GGWLNKEIVKYFEIYADTCFASFGDRVKN-WITINEPLQ 189 (278)
Q Consensus 151 ~----------ggw~~~~~~~~F~~ya~~v~~~~gd~V~~-w~t~NEP~~ 189 (278)
+ .|-.. ++...++.+.+-+++++.++. +..-|-..+
T Consensus 155 ~Ga~~i~i~DT~G~~~---P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGl 201 (333)
T TIGR03217 155 YGADCVYIVDSAGAML---PDDVRDRVRALKAVLKPETQVGFHAHHNLSL 201 (333)
T ss_pred cCCCEEEEccCCCCCC---HHHHHHHHHHHHHhCCCCceEEEEeCCCCch
Confidence 1 34444 455566677777777644433 567776664
No 156
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=40.46 E-value=1.9e+02 Score=23.65 Aligned_cols=58 Identities=12% Similarity=0.128 Sum_probs=39.3
Q ss_pred cCcHHHHHHHHHcCCCeeeeccc-ccc-cccCCCCCCCChhHHHHHHHHHHHHHhcC-CccEEee
Q 023712 77 HRYKEDIDLIAKLGFDAYRFSIS-WSR-IFPDGLGTKINMEGITFYNNIIDALLQKG-IQPYVTL 138 (278)
Q Consensus 77 ~~y~eDi~l~k~lG~~~~R~si~-WsR-i~P~~~G~~~n~~~l~~y~~~i~~l~~~G-I~pivtL 138 (278)
..-++.++.|++.|++.+.+|+. ++. +...-.. ..+ .+.+.+.|..+++.| +.+-+.+
T Consensus 97 ~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~-~~~---~~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 97 TLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINR-GHT---VEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred cCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcC-CCC---HHHHHHHHHHHHHhCCcceEEeE
Confidence 33478899999999999999985 533 2211111 222 478899999999999 5554443
No 157
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=40.08 E-value=58 Score=34.53 Aligned_cols=65 Identities=26% Similarity=0.377 Sum_probs=45.3
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCC------CCCChh--HHHHHHHHHHHHHhcCCccEEeeccCCCchhhH
Q 023712 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLG------TKINME--GITFYNNIIDALLQKGIQPYVTLYHWDLPLHLH 148 (278)
Q Consensus 80 ~eDi~l~k~lG~~~~R~si~WsRi~P~~~G------~~~n~~--~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~ 148 (278)
++-+..+++||+.++=.|--|.-.=-+..| +.+|++ |.+-+.+++.++++.||-.|+++ .|..+.
T Consensus 22 ~~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DI----VPNHMa 94 (889)
T COG3280 22 RALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDI----VPNHMA 94 (889)
T ss_pred HHhhHHHHhcCchheeccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEe----cccchh
Confidence 566789999999998877544332111111 245554 56778999999999999999998 355543
No 158
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=40.05 E-value=87 Score=27.45 Aligned_cols=60 Identities=22% Similarity=0.197 Sum_probs=42.9
Q ss_pred HHHHHH----HHHcCCCeeeecccccccccCC-CCCCCChhHHHHHHHHHHHHHhcCCccEEeecc
Q 023712 80 KEDIDL----IAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYH 140 (278)
Q Consensus 80 ~eDi~l----~k~lG~~~~R~si~WsRi~P~~-~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H 140 (278)
.+|++. +++.|++.+|+.++=+...... .+ .--++.++...++++.+++.|+++.+++-+
T Consensus 66 ~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~-~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~ 130 (237)
T PF00682_consen 66 EEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLN-KSREEALERIEEAVKYAKELGYEVAFGCED 130 (237)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTC-SHHHHHHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred HHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhc-CCHHHHHHHHHHHHHHHHhcCCceEeCccc
Confidence 455554 4569999999998755543332 12 223457888999999999999999887754
No 159
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=39.83 E-value=69 Score=30.41 Aligned_cols=71 Identities=20% Similarity=0.272 Sum_probs=46.8
Q ss_pred CccCCcc--cCcHHHHHHHHHcCCCeeeeccc----cc-------ccccCC----CCCCCChhHHHHHHHHHHHHHhcCC
Q 023712 70 DVAVDHY--HRYKEDIDLIAKLGFDAYRFSIS----WS-------RIFPDG----LGTKINMEGITFYNNIIDALLQKGI 132 (278)
Q Consensus 70 ~~a~d~y--~~y~eDi~l~k~lG~~~~R~si~----Ws-------Ri~P~~----~G~~~n~~~l~~y~~~i~~l~~~GI 132 (278)
|++-.|+ ...++-|+.|+..++|.+.+=++ |. .+-..+ .| .+.++ =++++|+.++++||
T Consensus 9 DvaR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~-~YT~~---di~eiv~yA~~rgI 84 (348)
T cd06562 9 DTSRHFLSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSE-VYTPE---DVKEIVEYARLRGI 84 (348)
T ss_pred eccccCCCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCc-eECHH---HHHHHHHHHHHcCC
Confidence 3444443 33566789999999998876552 22 221111 12 35553 46999999999999
Q ss_pred ccEEeeccCCCchhh
Q 023712 133 QPYVTLYHWDLPLHL 147 (278)
Q Consensus 133 ~pivtL~H~~~P~wl 147 (278)
++|.-+ |+|...
T Consensus 85 ~vIPEI---D~PGH~ 96 (348)
T cd06562 85 RVIPEI---DTPGHT 96 (348)
T ss_pred EEEEec---cCchhh
Confidence 999887 677654
No 160
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=39.78 E-value=2.4e+02 Score=26.26 Aligned_cols=109 Identities=16% Similarity=0.107 Sum_probs=58.8
Q ss_pred HHHHHHHHHcCCC--eeeecccccccccCCCC-CCCChhHHHHHHHHHHHHHhcCCccEEeeccCCC---chhhH--hh-
Q 023712 80 KEDIDLIAKLGFD--AYRFSISWSRIFPDGLG-TKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL---PLHLH--ES- 150 (278)
Q Consensus 80 ~eDi~l~k~lG~~--~~R~si~WsRi~P~~~G-~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~---P~wl~--~~- 150 (278)
.+-++.+++.|+. ++=+.+.|....-.... ..+|.+.+--..++|++|+++|+++++.++-+-. |..-+ ++
T Consensus 32 ~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~g 111 (317)
T cd06599 32 LEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEAG 111 (317)
T ss_pred HHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHCC
Confidence 3445566666654 34444445433110000 1233333333578999999999999887764322 22100 00
Q ss_pred h----------------------CCCCChHHHHHHHHHHHHHHHHhCCCcceEEEecCccc
Q 023712 151 M----------------------GGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (278)
Q Consensus 151 ~----------------------ggw~~~~~~~~F~~ya~~v~~~~gd~V~~w~t~NEP~~ 189 (278)
| -.+.||+..+.|.+..+......| -.-.|+=+|||.+
T Consensus 112 ~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~G-vdg~w~D~~E~~~ 171 (317)
T cd06599 112 AFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLG-IDSTWNDNNEYEI 171 (317)
T ss_pred cEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCC-CcEEEecCCCCcc
Confidence 0 013688888888776655554443 2345788999974
No 161
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=39.18 E-value=93 Score=29.16 Aligned_cols=62 Identities=16% Similarity=0.309 Sum_probs=44.6
Q ss_pred CcHHHHHHHHHcCCCeeeecc----cccc---cccCC------CCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCc
Q 023712 78 RYKEDIDLIAKLGFDAYRFSI----SWSR---IFPDG------LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (278)
Q Consensus 78 ~y~eDi~l~k~lG~~~~R~si----~WsR---i~P~~------~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P 144 (278)
..++-|+.|+..++|.+.+-+ +|.- -.|.- .| .+.++ =++++++.++++||++|.-+ |+|
T Consensus 19 ~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~-~yT~~---di~elv~yA~~rgI~vIPEI---d~P 91 (311)
T cd06570 19 VIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGL-YYTQE---QIREVVAYARDRGIRVVPEI---DVP 91 (311)
T ss_pred HHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCC-ccCHH---HHHHHHHHHHHcCCEEEEee---cCc
Confidence 356678999999999887765 4542 23331 12 46654 46999999999999999887 566
Q ss_pred hh
Q 023712 145 LH 146 (278)
Q Consensus 145 ~w 146 (278)
..
T Consensus 92 GH 93 (311)
T cd06570 92 GH 93 (311)
T ss_pred cc
Confidence 54
No 162
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=38.80 E-value=20 Score=32.88 Aligned_cols=73 Identities=15% Similarity=0.107 Sum_probs=41.4
Q ss_pred HHHhcCCccEEeeccCCCchhhHhhhCCCCChHHHHHHHHHHHHHHHHhCCCcceEEEecCcccccccCccccccC
Q 023712 126 ALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIFA 201 (278)
Q Consensus 126 ~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v~~~~gd~V~~w~t~NEP~~~~~~gy~~g~~~ 201 (278)
-+.+..+.|+++||||+.=.. -+.+....+.++.+.+=++.--.++--+-..|---....+-+..||..-.++
T Consensus 76 ~~~a~~~~pl~SlHH~~~~~P---ifP~~~~~~al~~L~~a~~~d~~~~lqqsicyd~~~~wsvsVSwGYsVqvy~ 148 (255)
T PF04646_consen 76 FLEAHPLAPLVSLHHWDSVDP---IFPNMSRLQALRHLLKAAKVDPARILQQSICYDRRRNWSVSVSWGYSVQVYR 148 (255)
T ss_pred eeecCCCCceeeeeehhhccc---cCCCCCHHHHHHHHHHHHhhChHhhhheeeeccCceEEEEEEEccEEEEEEC
Confidence 344556899999999985222 2355555566776666444433333222112223333345567899876664
No 163
>PLN02389 biotin synthase
Probab=38.73 E-value=91 Score=30.15 Aligned_cols=58 Identities=19% Similarity=0.233 Sum_probs=42.5
Q ss_pred CcHHHHHHHHHcCCCeeeecccccc-cccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeec
Q 023712 78 RYKEDIDLIAKLGFDAYRFSISWSR-IFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (278)
Q Consensus 78 ~y~eDi~l~k~lG~~~~R~si~WsR-i~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~ 139 (278)
.-+|.++.||+.|++.|-.+++=++ ++|.-.. .- .++..-+.++.+++.||++..++.
T Consensus 176 l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~-~~---s~e~rl~ti~~a~~~Gi~v~sg~I 234 (379)
T PLN02389 176 LEKEQAAQLKEAGLTAYNHNLDTSREYYPNVIT-TR---SYDDRLETLEAVREAGISVCSGGI 234 (379)
T ss_pred CCHHHHHHHHHcCCCEEEeeecCChHHhCCcCC-CC---CHHHHHHHHHHHHHcCCeEeEEEE
Confidence 5689999999999999998885222 4444211 12 356778999999999998866653
No 164
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=38.59 E-value=2.6e+02 Score=26.88 Aligned_cols=137 Identities=15% Similarity=0.158 Sum_probs=82.5
Q ss_pred ccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCC-----Cchh---------hHhhhCC-CC---------
Q 023712 100 WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWD-----LPLH---------LHESMGG-WL--------- 155 (278)
Q Consensus 100 WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~-----~P~w---------l~~~~gg-w~--------- 155 (278)
=.++.|...| -++.+-+.-+.++.+.++++|=++++=|.|-+ ...| +... ++ ..
T Consensus 66 ~g~~~~~~~~-l~~d~~i~~~~~vt~avH~~G~~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~-~~~~~~pr~mt~~e 143 (363)
T COG1902 66 GGRGYPGQPG-LWSDAQIPGLKRLTEAVHAHGAKIFIQLWHAGRKARASHPWLPSAVAPSAIPAP-GGRRATPRELTEEE 143 (363)
T ss_pred ccccCCCCCc-cCChhHhHHHHHHHHHHHhcCCeEEEEeccCcccccccccCCCcccCCCccccc-cCCCCCCccCCHHH
Confidence 3345666556 56666699999999999999999999999965 1111 1111 11 11
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCcceEEEecCcccccccCccccc-cCCCCCCCCCchHH-HHHHHHHHHHHHHHHHHHHH
Q 023712 156 NKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGI-FAPGRHQHSSTEPY-LVAHHQILAHAAAFSVYQRK 233 (278)
Q Consensus 156 ~~~~~~~F~~ya~~v~~~~gd~V~~w~t~NEP~~~~~~gy~~g~-~~P~~~~~~~~~~~-~~~h~~l~AHa~a~~~~r~~ 233 (278)
-.+++++|++=|+...+.==|-|. +..-.||+... +.|..- ..+..| =.+-|-++=-..++++.|+.
T Consensus 144 I~~ii~~f~~AA~rA~~AGFDgVE---------IH~AhGYLi~qFlsp~tN--~RtD~YGGSlENR~Rf~~EVv~aVr~~ 212 (363)
T COG1902 144 IEEVIEDFARAARRAKEAGFDGVE---------IHGAHGYLLSQFLSPLTN--KRTDEYGGSLENRARFLLEVVDAVREA 212 (363)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEE---------EeeccchHHHHhcCCccC--CCCCccCCcHHHHHHHHHHHHHHHHHH
Confidence 135777888777765542224342 45778898754 455431 111111 12445555556677778876
Q ss_pred hcCCCCCeEEceecCcee
Q 023712 234 YKDKQGGNIGLVVDCEWA 251 (278)
Q Consensus 234 ~~~~~~~~iGi~~~~~~~ 251 (278)
-. ++..||+-++..-+
T Consensus 213 vg--~~~~vg~Rls~~d~ 228 (363)
T COG1902 213 VG--ADFPVGVRLSPDDF 228 (363)
T ss_pred hC--CCceEEEEECcccc
Confidence 42 34459999988765
No 165
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=38.36 E-value=1.1e+02 Score=31.33 Aligned_cols=92 Identities=14% Similarity=0.059 Sum_probs=55.5
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCc----hhhHhh-----
Q 023712 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP----LHLHES----- 150 (278)
Q Consensus 80 ~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P----~wl~~~----- 150 (278)
++|++...+.|++.+|+..+.+.+ +-....++.++++|+.+.+++..-+.| ..+.+.
T Consensus 94 ~~~v~~a~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~ 159 (582)
T TIGR01108 94 ERFVKKAVENGMDVFRIFDALNDP--------------RNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELL 159 (582)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcH--------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHH
Confidence 455899999999999998665433 234556677777777777766544444 111110
Q ss_pred -----------hCCCCChHHHHHHHHHHHHHHHHhCCCcceEEEecCccc
Q 023712 151 -----------MGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (278)
Q Consensus 151 -----------~ggw~~~~~~~~F~~ya~~v~~~~gd~V~~w~t~NEP~~ 189 (278)
-.|...|. ...+..+.+-++++ .--...+.|-..+
T Consensus 160 ~~Gad~I~i~Dt~G~~~P~---~v~~lv~~lk~~~~-~pi~~H~Hnt~Gl 205 (582)
T TIGR01108 160 EMGVDSICIKDMAGILTPK---AAYELVSALKKRFG-LPVHLHSHATTGM 205 (582)
T ss_pred HcCCCEEEECCCCCCcCHH---HHHHHHHHHHHhCC-CceEEEecCCCCc
Confidence 14555554 34455555556665 2224678887765
No 166
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.21 E-value=1.1e+02 Score=27.73 Aligned_cols=56 Identities=20% Similarity=0.267 Sum_probs=38.9
Q ss_pred cHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeecc
Q 023712 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYH 140 (278)
Q Consensus 79 y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H 140 (278)
..+-++.++++|.+++-+-+..+|....+ .++...++.+ -..+.++++.......|
T Consensus 13 ~~~a~~~~~~~G~~~~qif~~~P~~w~~~---~~~~~~~~~~---~~~~~~~~~~~~~i~~H 68 (274)
T TIGR00587 13 LQAAYNRAAEIGATAFMFFLKSPRWWRRP---MLEEEVIDWF---KAALETNKNLSQIVLVH 68 (274)
T ss_pred HHHHHHHHHHhCCCEEEEEecCccccCCC---CCCHHHHHHH---HHHHHHcCCCCcceecc
Confidence 45678999999999999999988887654 4555444333 34477788764333444
No 167
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=38.19 E-value=1.3e+02 Score=27.26 Aligned_cols=59 Identities=22% Similarity=0.106 Sum_probs=42.7
Q ss_pred HHHHHHHHHcC----CCeeeecccccccccCC-CCCCCChhHHHHHHHHHHHHHhcCCccEEeec
Q 023712 80 KEDIDLIAKLG----FDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (278)
Q Consensus 80 ~eDi~l~k~lG----~~~~R~si~WsRi~P~~-~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~ 139 (278)
.+|++...+.| ++.+|+.++-|.+.-.. .+ .=..+.++-..+.+..+++.|+++.+++.
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~-~~~~~~~~~~~~~i~~a~~~G~~v~~~~~ 135 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLK-KTREEVLERAVEAVEYAKSHGLDVEFSAE 135 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCeEEEeee
Confidence 78999999999 99999987655443221 12 11234578888999999999998776553
No 168
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=37.98 E-value=1e+02 Score=25.31 Aligned_cols=58 Identities=16% Similarity=0.070 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhCCCCChHHHHHHHHHHHHHHHHhCCC
Q 023712 116 GITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDR 177 (278)
Q Consensus 116 ~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v~~~~gd~ 177 (278)
..+=+.-+++.|++.|++|++.+.=. .+.|.. |-| .+++..+.|.+=.+..++++|-.
T Consensus 34 Ey~Dl~l~L~~~k~~g~~~lfVi~Pv-Ng~wyd--ytG-~~~~~r~~~y~kI~~~~~~~gf~ 91 (130)
T PF04914_consen 34 EYDDLQLLLDVCKELGIDVLFVIQPV-NGKWYD--YTG-LSKEMRQEYYKKIKYQLKSQGFN 91 (130)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEE-----HHHHH--HTT---HHHHHHHHHHHHHHHHTTT--
T ss_pred cHHHHHHHHHHHHHcCCceEEEecCC-cHHHHH--HhC-CCHHHHHHHHHHHHHHHHHCCCE
Confidence 34556889999999999999988411 123432 445 46777888888888889999853
No 169
>PRK05660 HemN family oxidoreductase; Provisional
Probab=37.92 E-value=1.4e+02 Score=28.54 Aligned_cols=94 Identities=11% Similarity=0.036 Sum_probs=56.3
Q ss_pred cHHHHHHHHHcCCCeeeeccc-cc-ccccCCCCCCCChhHHHHHHHHHHHHHhcCCccE-EeeccCCCchhhHhhhCCCC
Q 023712 79 YKEDIDLIAKLGFDAYRFSIS-WS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLHLHESMGGWL 155 (278)
Q Consensus 79 y~eDi~l~k~lG~~~~R~si~-Ws-Ri~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pi-vtL~H~~~P~wl~~~~ggw~ 155 (278)
-++.++.|+++|++.+-++++ =+ ++...- |..-+ .+-..+.|+.+++.|+.++ ++|. +++|. .
T Consensus 106 ~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l-~r~~~---~~~~~~ai~~~~~~G~~~v~~dli-~Glpg---------q 171 (378)
T PRK05660 106 EADRFVGYQRAGVNRISIGVQSFSEEKLKRL-GRIHG---PDEAKRAAKLAQGLGLRSFNLDLM-HGLPD---------Q 171 (378)
T ss_pred CHHHHHHHHHcCCCEEEeccCcCCHHHHHHh-CCCCC---HHHHHHHHHHHHHcCCCeEEEEee-cCCCC---------C
Confidence 358999999999997666662 22 222221 20222 3456778999999999875 5554 46662 2
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCcceEEEecCccc
Q 023712 156 NKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (278)
Q Consensus 156 ~~~~~~~F~~ya~~v~~~~gd~V~~w~t~NEP~~ 189 (278)
+ .+.+.+-.+.+.+-=-+.+..+...=||..
T Consensus 172 t---~~~~~~~l~~~~~l~p~~is~y~l~~~~gT 202 (378)
T PRK05660 172 S---LEEALDDLRQAIALNPPHLSWYQLTIEPNT 202 (378)
T ss_pred C---HHHHHHHHHHHHhcCCCeEEeeccEeccCC
Confidence 3 344444444444433356777766666654
No 170
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=37.70 E-value=25 Score=25.24 Aligned_cols=39 Identities=18% Similarity=0.441 Sum_probs=31.7
Q ss_pred cccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCC
Q 023712 101 SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWD 142 (278)
Q Consensus 101 sRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~ 142 (278)
+++.|.. + .-.+++++..-+++..|.++|| +.+.|++-+
T Consensus 19 s~l~p~~-~-~d~~kaldiCaeIL~cLE~R~i-sWl~LFqlt 57 (64)
T PF03511_consen 19 SYLAPKE-G-ADSLKALDICAEILGCLEKRKI-SWLVLFQLT 57 (64)
T ss_pred HhcCccc-c-cccHHHHHHHHHHHHHHHhCCC-cHHHhhhcc
Confidence 5788886 5 4567889999999999999998 888887643
No 171
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=37.03 E-value=1.2e+02 Score=27.92 Aligned_cols=87 Identities=11% Similarity=0.167 Sum_probs=59.8
Q ss_pred HHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCC---C-c----hhhH------
Q 023712 83 IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWD---L-P----LHLH------ 148 (278)
Q Consensus 83 i~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~---~-P----~wl~------ 148 (278)
.+.+++.+-+.=.++..|-.|-|++ .+.. ....++++.++++|+++++.+..++ . + .-+.
T Consensus 16 ~~~~~~~~~~lt~v~p~w~~~~~~g---~~~~---~~~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~ 89 (313)
T cd02874 16 YESLRANAPYLTYIAPFWYGVDADG---TLTG---LPDERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQ 89 (313)
T ss_pred HHHHHHhcCCCCEEEEEEEEEcCCC---CCCC---CCCHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHH
Confidence 6777777777777888999998865 3332 1246899999999999999998654 1 1 0111
Q ss_pred ----------hhh--CC----CC--ChHHHHHHHHHHHHHHHHhC
Q 023712 149 ----------ESM--GG----WL--NKEIVKYFEIYADTCFASFG 175 (278)
Q Consensus 149 ----------~~~--gg----w~--~~~~~~~F~~ya~~v~~~~g 175 (278)
.+| .| |. .++..+.|..+.+.+..++.
T Consensus 90 ~fi~~iv~~l~~~~~DGidiDwE~~~~~d~~~~~~fl~~lr~~l~ 134 (313)
T cd02874 90 RLINNILALAKKYGYDGVNIDFENVPPEDREAYTQFLRELSDRLH 134 (313)
T ss_pred HHHHHHHHHHHHhCCCcEEEecccCCHHHHHHHHHHHHHHHHHhh
Confidence 012 34 43 45667788999888888885
No 172
>PRK14706 glycogen branching enzyme; Provisional
Probab=36.96 E-value=69 Score=33.21 Aligned_cols=91 Identities=15% Similarity=0.202 Sum_probs=52.9
Q ss_pred HHHHHHcCCCeeeecccccccccCC-C-C------CCCChh--HHHHHHHHHHHHHhcCCccEEeec--cCC--------
Q 023712 83 IDLIAKLGFDAYRFSISWSRIFPDG-L-G------TKINME--GITFYNNIIDALLQKGIQPYVTLY--HWD-------- 142 (278)
Q Consensus 83 i~l~k~lG~~~~R~si~WsRi~P~~-~-G------~~~n~~--~l~~y~~~i~~l~~~GI~pivtL~--H~~-------- 142 (278)
++.+|+||++++-+.=-=. .|.. . | ..++.. ..+=++.+|++|+++||++|+++. |+.
T Consensus 174 ~~ylk~lG~t~velmPv~e--~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~ 251 (639)
T PRK14706 174 GEYVTYMGYTHVELLGVME--HPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAH 251 (639)
T ss_pred HHHHHHcCCCEEEccchhc--CCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhc
Confidence 3679999999987652100 1111 0 1 001110 134579999999999999999754 432
Q ss_pred ---Cchh-hHhhhC----CC-------CChHHHHHHHHHHHHHHHHhC
Q 023712 143 ---LPLH-LHESMG----GW-------LNKEIVKYFEIYADTCFASFG 175 (278)
Q Consensus 143 ---~P~w-l~~~~g----gw-------~~~~~~~~F~~ya~~v~~~~g 175 (278)
.|.+ ..+... .| .++++.+.+.+=++.-+++|+
T Consensus 252 ~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 252 FDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred cCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 1211 000001 12 257788888888888888886
No 173
>PRK07094 biotin synthase; Provisional
Probab=36.42 E-value=68 Score=29.67 Aligned_cols=57 Identities=12% Similarity=0.091 Sum_probs=40.3
Q ss_pred CcHHHHHHHHHcCCCeeeeccc-c-cccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEee
Q 023712 78 RYKEDIDLIAKLGFDAYRFSIS-W-SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (278)
Q Consensus 78 ~y~eDi~l~k~lG~~~~R~si~-W-sRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL 138 (278)
.-+|+++.|+++|++.+-++++ - +++...-.. ..+ .+-+.+.++.+++.||.+..++
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~-~~s---~~~~~~~i~~l~~~Gi~v~~~~ 185 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHETADKELYAKLHP-GMS---FENRIACLKDLKELGYEVGSGF 185 (323)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHHhCC-CCC---HHHHHHHHHHHHHcCCeecceE
Confidence 4578999999999999998874 2 344433211 222 4567889999999999765544
No 174
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=36.18 E-value=66 Score=31.56 Aligned_cols=61 Identities=16% Similarity=0.315 Sum_probs=38.7
Q ss_pred cHHHHHHHHHcCCCeeeeccc-cc-ccccCCCCCCCChhHHHHHHHHHHHHHhcCCc-cEEeeccCCCc
Q 023712 79 YKEDIDLIAKLGFDAYRFSIS-WS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQ-PYVTLYHWDLP 144 (278)
Q Consensus 79 y~eDi~l~k~lG~~~~R~si~-Ws-Ri~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~-pivtL~H~~~P 144 (278)
-++.+++|+++|++.+-++++ =+ ++...- +...+ .+.+.+.++.|++.|++ +-++|. +++|
T Consensus 150 ~~e~l~~lk~~G~~risiGvqS~~~~~l~~l-~r~~~---~~~~~~ai~~l~~~G~~~v~~dli-~GlP 213 (455)
T TIGR00538 150 TKDVIDALRDEGFNRLSFGVQDFNKEVQQAV-NRIQP---EEMIFELMNHAREAGFTSINIDLI-YGLP 213 (455)
T ss_pred CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHh-CCCCC---HHHHHHHHHHHHhcCCCcEEEeEE-eeCC
Confidence 368899999999996666652 21 222211 20223 35678999999999997 445543 4555
No 175
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=35.69 E-value=1.3e+02 Score=28.90 Aligned_cols=84 Identities=17% Similarity=0.220 Sum_probs=60.2
Q ss_pred CCcccCcHHHHHHHHHcCCCeeeecccccccccCC----CCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhH
Q 023712 73 VDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDG----LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLH 148 (278)
Q Consensus 73 ~d~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~----~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~ 148 (278)
++.+-.-++=++.+.+.|++-+-+|++ .+-|.. .| ..+=.+++--++.+.+.+.||.++++ |.|+-
T Consensus 197 Tng~~L~~~lv~eLeeAGLdRiNlSv~--aLDpk~Ak~L~G--~~dYdv~kvle~aE~i~~a~idvlIa------Pv~lP 266 (414)
T COG2100 197 TNGVLLSKKLVDELEEAGLDRINLSVD--ALDPKLAKMLAG--RKDYDVKKVLEVAEYIANAGIDVLIA------PVWLP 266 (414)
T ss_pred eCceeccHHHHHHHHHhCCceEEeecc--cCCHHHHHHhcC--ccccCHHHHHHHHHHHHhCCCCEEEe------eeecC
Confidence 445556677789999999998777773 343331 13 22223788899999999999999875 67763
Q ss_pred hhhCCCCChHHHHHHHHHHHHHH
Q 023712 149 ESMGGWLNKEIVKYFEIYADTCF 171 (278)
Q Consensus 149 ~~~ggw~~~~~~~~F~~ya~~v~ 171 (278)
| .|.+-...+..||+.+-
T Consensus 267 ----G-~ND~E~~~iIe~A~~iG 284 (414)
T COG2100 267 ----G-VNDDEMPKIIEWAREIG 284 (414)
T ss_pred ----C-cChHHHHHHHHHHHHhC
Confidence 3 66777888889988754
No 176
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=35.53 E-value=3.6e+02 Score=25.09 Aligned_cols=62 Identities=15% Similarity=0.192 Sum_probs=42.3
Q ss_pred cHHHHHHHHHcCCCeeeecc--cccc---cccC-----------------------CCCCCCChhHHHHHHHHHHHHHhc
Q 023712 79 YKEDIDLIAKLGFDAYRFSI--SWSR---IFPD-----------------------GLGTKINMEGITFYNNIIDALLQK 130 (278)
Q Consensus 79 y~eDi~l~k~lG~~~~R~si--~WsR---i~P~-----------------------~~G~~~n~~~l~~y~~~i~~l~~~ 130 (278)
.++=|+.|+..++|.+.+=+ +|.- ..|. ..| .+.++ =++++++.++++
T Consensus 19 ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~-~YT~~---di~eiv~yA~~r 94 (326)
T cd06564 19 LKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDG-YYTKE---EFKELIAYAKDR 94 (326)
T ss_pred HHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCC-cccHH---HHHHHHHHHHHc
Confidence 56678999999999887633 2211 1111 113 55653 469999999999
Q ss_pred CCccEEeeccCCCchhh
Q 023712 131 GIQPYVTLYHWDLPLHL 147 (278)
Q Consensus 131 GI~pivtL~H~~~P~wl 147 (278)
||++|.-+ |+|...
T Consensus 95 gI~vIPEI---D~PGH~ 108 (326)
T cd06564 95 GVNIIPEI---DSPGHS 108 (326)
T ss_pred CCeEeccC---CCcHHH
Confidence 99998776 677653
No 177
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=35.51 E-value=46 Score=29.75 Aligned_cols=60 Identities=8% Similarity=0.000 Sum_probs=39.5
Q ss_pred ccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEe
Q 023712 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVT 137 (278)
Q Consensus 76 y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivt 137 (278)
...++.-+++.+.+|.+++++........+.. . ..-+..++.++++.+.+.++||+..+=
T Consensus 89 ~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~-~-~~~~~~~~~l~~l~~~a~~~gv~l~iE 148 (275)
T PRK09856 89 LDMIKLAMDMAKEMNAGYTLISAAHAGYLTPP-N-VIWGRLAENLSELCEYAENIGMDLILE 148 (275)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCH-H-HHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 45566678999999999999864322111111 1 111345677888899999999876654
No 178
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=35.30 E-value=2.5e+02 Score=29.63 Aligned_cols=153 Identities=15% Similarity=0.090 Sum_probs=86.4
Q ss_pred HHHHHcCCCeeeec---c-cccccccCCCCCCCChhHHHHHHHHHHHHHhc-CCccEEeeccCCC-----chhhHh----
Q 023712 84 DLIAKLGFDAYRFS---I-SWSRIFPDGLGTKINMEGITFYNNIIDALLQK-GIQPYVTLYHWDL-----PLHLHE---- 149 (278)
Q Consensus 84 ~l~k~lG~~~~R~s---i-~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~-GI~pivtL~H~~~-----P~wl~~---- 149 (278)
...+.-|+-.+=.. + .-.|+.|...| -++.+.+.-++++++.++++ |-++++=|.|-+- +.|...
T Consensus 438 ~~rA~gG~glii~e~~~v~~~g~~~~~~~~-~~~d~~i~~~~~~~~~vh~~gg~~i~~QL~h~Gr~~~~~~~~~~~~~~~ 516 (765)
T PRK08255 438 GARALGGAGLVMTEMTCVSPEGRITPGCPG-LYNDEQEAAWKRIVDFVHANSDAKIGIQLGHSGRKGSTRLGWEGIDEPL 516 (765)
T ss_pred HHHHcCCCcEEEECCeEECCCcCCCCCCCc-cCCHHHHHHHHHHHHHHHhcCCceEEEEccCCccccccccccccccccc
Confidence 33444455554322 2 23456665446 78999999999999999999 6899999998321 111100
Q ss_pred hhCCCC-----------------------ChHHHHHHHHHHHHHHHHhC-CCcceEEEecCcccccccCcccccc-CCCC
Q 023712 150 SMGGWL-----------------------NKEIVKYFEIYADTCFASFG-DRVKNWITINEPLQTAVNGYCTGIF-APGR 204 (278)
Q Consensus 150 ~~ggw~-----------------------~~~~~~~F~~ya~~v~~~~g-d~V~~w~t~NEP~~~~~~gy~~g~~-~P~~ 204 (278)
..++|. -.++++.|++=|+.+.+ -| |-|. +-+-.||+...| .|-.
T Consensus 517 ~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i~~f~~aA~~a~~-aGfDgve---------ih~ahGyLl~qFlsp~~ 586 (765)
T PRK08255 517 EEGNWPLISASPLPYLPGSQVPREMTRADMDRVRDDFVAAARRAAE-AGFDWLE---------LHCAHGYLLSSFISPLT 586 (765)
T ss_pred ccCCCceeCCCCCcCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHH-cCCCEEE---------EecccchHHHHhcCCCC
Confidence 001220 12467888886666544 34 3332 235567876543 3432
Q ss_pred --CCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEceecCceee
Q 023712 205 --HQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWAE 252 (278)
Q Consensus 205 --~~~~~~~~~~~~h~~l~AHa~a~~~~r~~~~~~~~~~iGi~~~~~~~~ 252 (278)
+.+.. --.+-|-++--..+++++|+... .+-.||+-++..-+.
T Consensus 587 N~RtD~y---GGslenR~r~~~eiv~~ir~~~~--~~~~v~~ri~~~~~~ 631 (765)
T PRK08255 587 NQRTDEY---GGSLENRLRYPLEVFRAVRAVWP--AEKPMSVRISAHDWV 631 (765)
T ss_pred CCCCCCC---CCCHHHHhHHHHHHHHHHHHhcC--CCCeeEEEEcccccc
Confidence 11111 11234555556667888888642 356788888865433
No 179
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=35.04 E-value=64 Score=29.81 Aligned_cols=60 Identities=27% Similarity=0.376 Sum_probs=47.4
Q ss_pred CcHHHHHHHHHcCCCeeeecccccccccCC-CCCCCChhHHHHHHHHHHHHHhcCCccEEee
Q 023712 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (278)
Q Consensus 78 ~y~eDi~l~k~lG~~~~R~si~WsRi~P~~-~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL 138 (278)
.-++|++...+.|++.+-+.++=|...-.. .+ .=-++.++.+.+++..++++|+++-+++
T Consensus 75 ~~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~-~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 75 ANKEDLKLVKEMGLKETGILMSVSDYHIFKKLK-MTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred CCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhC-cCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 347999999999999999888665554332 13 2345689999999999999999988888
No 180
>PTZ00445 p36-lilke protein; Provisional
Probab=34.53 E-value=73 Score=28.61 Aligned_cols=57 Identities=16% Similarity=0.163 Sum_probs=39.6
Q ss_pred HHHHHHHcCCCeeeecccccccccCCCCCCCChh---------HHHHHHHHHHHHHhcCCccEEeec
Q 023712 82 DIDLIAKLGFDAYRFSISWSRIFPDGLGTKINME---------GITFYNNIIDALLQKGIQPYVTLY 139 (278)
Q Consensus 82 Di~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~---------~l~~y~~~i~~l~~~GI~pivtL~ 139 (278)
=++++++.|++.+=+.++=.-|--...| -.++. +-.-...++.+|.++||.++|..+
T Consensus 34 ~v~~L~~~GIk~Va~D~DnTlI~~HsgG-~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTf 99 (219)
T PTZ00445 34 FVDLLNECGIKVIASDFDLTMITKHSGG-YIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTF 99 (219)
T ss_pred HHHHHHHcCCeEEEecchhhhhhhhccc-ccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEc
Confidence 3689999999999988765544311112 22222 233477899999999999988776
No 181
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=34.26 E-value=40 Score=28.11 Aligned_cols=62 Identities=13% Similarity=0.039 Sum_probs=40.1
Q ss_pred ccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEe
Q 023712 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVT 137 (278)
Q Consensus 76 y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivt 137 (278)
....++-+++++.+|++.+++...+-...+...-..--....+.++++.+.+.++|+.+.+=
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE 131 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALE 131 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEe
Confidence 45677889999999999999987641111111000011124677888888888999776554
No 182
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=33.39 E-value=64 Score=29.06 Aligned_cols=61 Identities=8% Similarity=0.093 Sum_probs=39.6
Q ss_pred ccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEee
Q 023712 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (278)
Q Consensus 76 y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL 138 (278)
-.++++-+++++++|.+.++++-. +..+.......-...++.++++++.+.+.||.+.+=.
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 93 LEIMEKAIQLARDLGIRTIQLAGY--DVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCc--ccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 345677799999999999998521 1111110001112346777888999999999887754
No 183
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=33.26 E-value=1e+02 Score=29.21 Aligned_cols=71 Identities=21% Similarity=0.376 Sum_probs=46.2
Q ss_pred CccCCcc--cCcHHHHHHHHHcCCCeeeeccc-----------ccccccCC--------------------CCCCCChhH
Q 023712 70 DVAVDHY--HRYKEDIDLIAKLGFDAYRFSIS-----------WSRIFPDG--------------------LGTKINMEG 116 (278)
Q Consensus 70 ~~a~d~y--~~y~eDi~l~k~lG~~~~R~si~-----------WsRi~P~~--------------------~G~~~n~~~ 116 (278)
|++-.|+ ...++-|+.|+..++|.+.+-++ .+.+-..+ .| .+.+
T Consensus 9 D~aR~f~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~-~YT~-- 85 (357)
T cd06563 9 DVSRHFFPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGG-FYTQ-- 85 (357)
T ss_pred eccccCcCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCc-eECH--
Confidence 3444443 33566789999999998876552 22321111 12 3444
Q ss_pred HHHHHHHHHHHHhcCCccEEeeccCCCchhh
Q 023712 117 ITFYNNIIDALLQKGIQPYVTLYHWDLPLHL 147 (278)
Q Consensus 117 l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl 147 (278)
+=++++++.++++||++|.-+ |+|...
T Consensus 86 -~di~eiv~yA~~rgI~VIPEI---D~PGH~ 112 (357)
T cd06563 86 -EEIREIVAYAAERGITVIPEI---DMPGHA 112 (357)
T ss_pred -HHHHHHHHHHHHcCCEEEEec---CCchhH
Confidence 457999999999999999876 666543
No 184
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=33.13 E-value=1e+02 Score=32.21 Aligned_cols=64 Identities=14% Similarity=0.147 Sum_probs=37.4
Q ss_pred HHHHHHHhcCCccEEeeccCCCchhhHhhhCCCC----ChH-HHHHHHHHHHHHHHHhCCCcceEEEecCcc
Q 023712 122 NIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWL----NKE-IVKYFEIYADTCFASFGDRVKNWITINEPL 188 (278)
Q Consensus 122 ~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~----~~~-~~~~F~~ya~~v~~~~gd~V~~w~t~NEP~ 188 (278)
.++.++++++=.+-+....|..|.|+.. ||. ++. +.....++..-+.+.+|=.++|--++||=.
T Consensus 116 ~L~~eAKkrNP~ikl~~L~W~~PgW~~~---g~~~~~~~~~~~a~Y~~~wl~ga~~~~gl~idYvg~~NEr~ 184 (669)
T PF02057_consen 116 WLMAEAKKRNPNIKLYGLPWGFPGWVGN---GWNWPYDNPQLTAYYVVSWLLGAKKTHGLDIDYVGIWNERG 184 (669)
T ss_dssp HHHHHHHHH-TT-EEEEEES-B-GGGGT---TSS-TTSSHHHHHHHHHHHHHHHHHHH-----EE-S-TTS-
T ss_pred hhHHHHHhhCCCCeEEEeccCCCccccC---CCCCcccchhhhhHHHHHHHHHHHHHhCCCceEechhhccC
Confidence 5788999998888888889999999964 443 333 333445666667788888898888899954
No 185
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=32.98 E-value=1.2e+02 Score=29.50 Aligned_cols=89 Identities=19% Similarity=0.310 Sum_probs=60.6
Q ss_pred HHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccC--CCch-----hhHh--------
Q 023712 85 LIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW--DLPL-----HLHE-------- 149 (278)
Q Consensus 85 l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~--~~P~-----wl~~-------- 149 (278)
.|.=+|+.+.|+.+.|. | .+|+ +...++|+...++||.-|=|-+-+ ..-- .|.+
T Consensus 12 ~~s~lgfG~MRlp~~~~-------~-~id~---~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~L 80 (391)
T COG1453 12 ELSILGFGCMRLPLKEQ-------G-SIDE---ENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKL 80 (391)
T ss_pred ccceeccceeecccccC-------C-CccH---HHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceEEE
Confidence 34458999999999998 4 6886 467999999999999988776533 2211 1111
Q ss_pred --hhCCCCChHHHHHHHHHHHHHHHHhC-CCcceEEEec
Q 023712 150 --SMGGWLNKEIVKYFEIYADTCFASFG-DRVKNWITIN 185 (278)
Q Consensus 150 --~~ggw~~~~~~~~F~~ya~~v~~~~g-d~V~~w~t~N 185 (278)
|+..|.- +..++|.++-..=.++++ |.++++.+-|
T Consensus 81 aTKlp~~~~-~~~edm~r~fneqLekl~~Dy~D~yliH~ 118 (391)
T COG1453 81 ATKLPSWPV-KDREDMERIFNEQLEKLGTDYIDYYLIHG 118 (391)
T ss_pred EeecCCccc-cCHHHHHHHHHHHHHHhCCchhhhhhhcc
Confidence 1233332 346778888887788887 4688877543
No 186
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=32.85 E-value=1.7e+02 Score=29.11 Aligned_cols=61 Identities=10% Similarity=0.015 Sum_probs=40.6
Q ss_pred cHHHHHHHHHcCCCeeeeccc--ccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCc
Q 023712 79 YKEDIDLIAKLGFDAYRFSIS--WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (278)
Q Consensus 79 y~eDi~l~k~lG~~~~R~si~--WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P 144 (278)
-++-+++|+++|++.+-++++ =+++...-.. ..+ ++-..+.|..++++||.+.+++. +++|
T Consensus 286 d~ell~~l~~aG~~~v~iGiES~~~~~L~~~~K-~~t---~~~~~~ai~~l~~~Gi~~~~~~I-~G~P 348 (497)
T TIGR02026 286 DADILHLYRRAGLVHISLGTEAAAQATLDHFRK-GTT---TSTNKEAIRLLRQHNILSEAQFI-TGFE 348 (497)
T ss_pred CHHHHHHHHHhCCcEEEEccccCCHHHHHHhcC-CCC---HHHHHHHHHHHHHCCCcEEEEEE-EECC
Confidence 355689999999998888873 2233322111 334 34567899999999999877654 3555
No 187
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=32.65 E-value=1.3e+02 Score=27.58 Aligned_cols=72 Identities=7% Similarity=-0.027 Sum_probs=51.2
Q ss_pred CcccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHh
Q 023712 74 DHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHE 149 (278)
Q Consensus 74 d~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~ 149 (278)
+-.+...+-.+.+|++|++.+|-+..=+|--|...- .+.. +.+..+-+.+.+.||..+.+.+.-..+..+.+
T Consensus 38 e~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~-G~g~---~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~ 109 (266)
T PRK13398 38 ESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQ-GLGE---EGLKILKEVGDKYNLPVVTEVMDTRDVEEVAD 109 (266)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccC-CcHH---HHHHHHHHHHHHcCCCEEEeeCChhhHHHHHH
Confidence 345556677789999999999999755777765421 1334 44566666679999999999987666665543
No 188
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=32.47 E-value=88 Score=34.69 Aligned_cols=59 Identities=19% Similarity=0.250 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhcCCccEEeec--cCC--------CchhhHh---------hhCC----CCChHHHHHHHHHHHHHHHH
Q 023712 117 ITFYNNIIDALLQKGIQPYVTLY--HWD--------LPLHLHE---------SMGG----WLNKEIVKYFEIYADTCFAS 173 (278)
Q Consensus 117 l~~y~~~i~~l~~~GI~pivtL~--H~~--------~P~wl~~---------~~gg----w~~~~~~~~F~~ya~~v~~~ 173 (278)
++=+++||++|+++||++|+.+. |.. .|.|..- .++| -.++.+...+.+-++.-+++
T Consensus 554 i~EfK~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~e 633 (1111)
T TIGR02102 554 IAEFKNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDE 633 (1111)
T ss_pred HHHHHHHHHHHHHCCCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHh
Confidence 46689999999999999999853 421 1322210 0011 12456667777777777777
Q ss_pred hC
Q 023712 174 FG 175 (278)
Q Consensus 174 ~g 175 (278)
|+
T Consensus 634 y~ 635 (1111)
T TIGR02102 634 FK 635 (1111)
T ss_pred cC
Confidence 75
No 189
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=32.46 E-value=3.6e+02 Score=25.43 Aligned_cols=134 Identities=16% Similarity=0.160 Sum_probs=74.8
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCc---hh------------hHhhh------C--CCC---
Q 023712 102 RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP---LH------------LHESM------G--GWL--- 155 (278)
Q Consensus 102 Ri~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P---~w------------l~~~~------g--gw~--- 155 (278)
+..|...+ -++.+.+..++++.+.++++|-.+++=|+|.+.- .+ ....- + +..
T Consensus 62 ~~~~~~~~-l~~d~~i~~lr~la~~vh~~ga~~~~QL~H~G~~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~~p~ 140 (338)
T cd02933 62 QGYPNTPG-IYTDEQVEGWKKVTDAVHAKGGKIFLQLWHVGRVSHPSLLPGGAPPVAPSAIAAEGKVFTPAGKVPYPTPR 140 (338)
T ss_pred cCCCCCCc-cCCHHHHHHHHHHHHHHHhcCCeEEEEcccCccCCCcccccCCCCccCCCCCCCCcccccccccCCCCCCC
Confidence 34443334 5688889999999999999999999999994421 00 00000 0 111
Q ss_pred ------ChHHHHHHHHHHHHHHHHhCCCcceEEEecCcccccccCcccccc-CCCC--CCCCCchHHHHHHHHHHHHHHH
Q 023712 156 ------NKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIF-APGR--HQHSSTEPYLVAHHQILAHAAA 226 (278)
Q Consensus 156 ------~~~~~~~F~~ya~~v~~~~gd~V~~w~t~NEP~~~~~~gy~~g~~-~P~~--~~~~~~~~~~~~h~~l~AHa~a 226 (278)
-.++++.|++=|+.+.+.==|-|. +-+-.||+...| .|-. +.+..- -.+-|-+.--..+
T Consensus 141 ~mt~~eI~~ii~~f~~aA~~a~~aGfDgVe---------ih~ahGyLl~qFlSp~~N~R~D~yG---GslenR~rf~~ei 208 (338)
T cd02933 141 ALTTEEIPGIVADFRQAARNAIEAGFDGVE---------IHGANGYLIDQFLRDGSNKRTDEYG---GSIENRARFLLEV 208 (338)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEE---------EccccchhHHHhcCCccCCCCCcCC---CcHHHhhhHHHHH
Confidence 135678888766655543223332 234567776543 3421 111111 1234444555566
Q ss_pred HHHHHHHhcCCCCCeEEceecCcee
Q 023712 227 FSVYQRKYKDKQGGNIGLVVDCEWA 251 (278)
Q Consensus 227 ~~~~r~~~~~~~~~~iGi~~~~~~~ 251 (278)
++.+|+.-. .+ .||+-++..-+
T Consensus 209 i~air~~vg--~d-~v~vRis~~~~ 230 (338)
T cd02933 209 VDAVAEAIG--AD-RVGIRLSPFGT 230 (338)
T ss_pred HHHHHHHhC--CC-ceEEEECcccc
Confidence 777777532 23 58888876543
No 190
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=32.31 E-value=84 Score=30.88 Aligned_cols=60 Identities=20% Similarity=0.334 Sum_probs=38.6
Q ss_pred cHHHHHHHHHcCCCeeeecccccccccCC---CCCCCChhHHHHHHHHHHHHHhcCCc-cEEeeccCCCc
Q 023712 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG---LGTKINMEGITFYNNIIDALLQKGIQ-PYVTLYHWDLP 144 (278)
Q Consensus 79 y~eDi~l~k~lG~~~~R~si~WsRi~P~~---~G~~~n~~~l~~y~~~i~~l~~~GI~-pivtL~H~~~P 144 (278)
-++.+++|+++|++.+-+++ .-+-|+- -|...+ .+-..+.|+.+++.|+. +-++|. +++|
T Consensus 151 t~e~l~~L~~~G~~rvsiGv--QS~~~~vl~~l~R~~~---~~~~~~ai~~lr~~G~~~v~~dli-~GlP 214 (453)
T PRK13347 151 TAEMLQALAALGFNRASFGV--QDFDPQVQKAINRIQP---EEMVARAVELLRAAGFESINFDLI-YGLP 214 (453)
T ss_pred CHHHHHHHHHcCCCEEEECC--CCCCHHHHHHhCCCCC---HHHHHHHHHHHHhcCCCcEEEeEE-EeCC
Confidence 46889999999999666665 2222221 020222 45678899999999997 445553 4555
No 191
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=32.18 E-value=2.1e+02 Score=27.57 Aligned_cols=94 Identities=10% Similarity=-0.015 Sum_probs=56.1
Q ss_pred HHHHHHHHHcCCCeeeecc-cc-cccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhCCCCCh
Q 023712 80 KEDIDLIAKLGFDAYRFSI-SW-SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNK 157 (278)
Q Consensus 80 ~eDi~l~k~lG~~~~R~si-~W-sRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~ 157 (278)
++.++.|+++|+|.+-+++ |- +.+...- | .... .+-..+.++.+++.+..+-++|. +++|. .+
T Consensus 111 ~e~l~~l~~~GvnRiSiGvQS~~d~~L~~l-g-R~h~--~~~~~~ai~~~~~~~~~v~~DlI-~GlPg---------qt- 175 (390)
T PRK06582 111 TEKFKAFKLAGINRVSIGVQSLKEDDLKKL-G-RTHD--CMQAIKTIEAANTIFPRVSFDLI-YARSG---------QT- 175 (390)
T ss_pred HHHHHHHHHCCCCEEEEECCcCCHHHHHHc-C-CCCC--HHHHHHHHHHHHHhCCcEEEEee-cCCCC---------CC-
Confidence 5899999999999777776 32 2333222 3 2211 24456667888888888888886 56662 12
Q ss_pred HHHHHHHHHHHHHHHHhCCCcceEEEecCcccc
Q 023712 158 EIVKYFEIYADTCFASFGDRVKNWITINEPLQT 190 (278)
Q Consensus 158 ~~~~~F~~ya~~v~~~~gd~V~~w~t~NEP~~~ 190 (278)
.+.+.+=++.+.+-=-++|..+...=||+..
T Consensus 176 --~e~~~~~l~~~~~l~p~his~y~L~i~~gT~ 206 (390)
T PRK06582 176 --LKDWQEELKQAMQLATSHISLYQLTIEKGTP 206 (390)
T ss_pred --HHHHHHHHHHHHhcCCCEEEEecCEEccCCh
Confidence 3333333444443223567777777677654
No 192
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=31.35 E-value=3.2e+02 Score=23.03 Aligned_cols=50 Identities=14% Similarity=0.379 Sum_probs=28.2
Q ss_pred HHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCc
Q 023712 82 DIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (278)
Q Consensus 82 Di~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P 144 (278)
|.+.+|+.|++.+=+=+. +|.+ ..|+ .|..-++.++++|| .+..+||-.|
T Consensus 13 d~~~~k~~gi~fviiKat------eG~~-y~D~----~~~~~~~~a~~aGl--~~G~Yhy~~~ 62 (184)
T cd06525 13 NFNAVKDSGVEVVYIKAT------EGTT-FVDS----YFNENYNGAKAAGL--KVGFYHFLVG 62 (184)
T ss_pred CHHHHHhCCCeEEEEEec------CCCc-ccCH----hHHHHHHHHHHCCC--ceEEEEEeeC
Confidence 556667666553322111 2323 4563 57777777777777 3567776544
No 193
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=31.17 E-value=1.6e+02 Score=27.12 Aligned_cols=108 Identities=13% Similarity=0.171 Sum_probs=56.0
Q ss_pred HHHHHHHHcCCC--eeeecccccccc-----cCCC-CCCCChhHHHHHHHHHHHHHhcCCccEEeeccC-CC-c---hh-
Q 023712 81 EDIDLIAKLGFD--AYRFSISWSRIF-----PDGL-GTKINMEGITFYNNIIDALLQKGIQPYVTLYHW-DL-P---LH- 146 (278)
Q Consensus 81 eDi~l~k~lG~~--~~R~si~WsRi~-----P~~~-G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~-~~-P---~w- 146 (278)
+-++.+++.|+. ++=+.+.|..-- .++- ...+|++-+--..++|++|++.|+++++.++-. .. | ..
T Consensus 29 ~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~~y~ 108 (292)
T cd06595 29 ALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPADGIRAHEDQYP 108 (292)
T ss_pred HHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCcccCCCcHHHH
Confidence 334555555543 555666664310 0110 113444444445789999999999988877532 11 1 01
Q ss_pred -hHhhh-----------CCCCChHHHHHHHHHHHHHHHHhCCCcc-eEEEecCcccc
Q 023712 147 -LHESM-----------GGWLNKEIVKYFEIYADTCFASFGDRVK-NWITINEPLQT 190 (278)
Q Consensus 147 -l~~~~-----------ggw~~~~~~~~F~~ya~~v~~~~gd~V~-~w~t~NEP~~~ 190 (278)
+.... ..+.||+..+.|.+-....+...| |+ .|.=+|||...
T Consensus 109 ~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~G--idg~W~D~~E~~~~ 163 (292)
T cd06595 109 EMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQG--VDFWWLDWQQGNRT 163 (292)
T ss_pred HHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcC--CcEEEecCCCCccc
Confidence 11111 125677766655443333333333 44 57888998754
No 194
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=31.09 E-value=39 Score=19.54 Aligned_cols=16 Identities=19% Similarity=0.509 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhcCCcc
Q 023712 119 FYNNIIDALLQKGIQP 134 (278)
Q Consensus 119 ~y~~~i~~l~~~GI~p 134 (278)
--.++++.+++.||+|
T Consensus 19 ~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 19 AALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 3477888888899987
No 195
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=30.77 E-value=1.4e+02 Score=23.23 Aligned_cols=53 Identities=23% Similarity=0.283 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCCeeeeccc-cccc-ccCCCCCCC-ChhHHHHHHHHHHHHHhcCCccEE
Q 023712 80 KEDIDLIAKLGFDAYRFSIS-WSRI-FPDGLGTKI-NMEGITFYNNIIDALLQKGIQPYV 136 (278)
Q Consensus 80 ~eDi~l~k~lG~~~~R~si~-WsRi-~P~~~G~~~-n~~~l~~y~~~i~~l~~~GI~piv 136 (278)
++.++.+++.|++.+++|++ -+.- ... .+ ....++..-+.++.|+++|+.+++
T Consensus 90 ~~~l~~l~~~~~~~i~~~l~s~~~~~~~~----~~~~~~~~~~~~~~l~~l~~~g~~~~~ 145 (166)
T PF04055_consen 90 EELLDELKKLGVDRIRISLESLDEESVLR----IINRGKSFERVLEALERLKEAGIPRVI 145 (166)
T ss_dssp HHHHHHHHHTTCSEEEEEEBSSSHHHHHH----HHSSTSHHHHHHHHHHHHHHTTSETEE
T ss_pred HHHHHHHHhcCccEEecccccCCHHHhhh----hhcCCCCHHHHHHHHHHHHHcCCCcEE
Confidence 89999999999999999984 2221 111 11 112356778999999999998633
No 196
>cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline
Probab=30.69 E-value=4e+02 Score=24.61 Aligned_cols=104 Identities=12% Similarity=0.083 Sum_probs=69.6
Q ss_pred HHHHHHHHHcCCCeeeeccc-ccccccCC--CCCCC----ChhHHHHHHHHHHHHHhcC---CccEEeeccCCCchhhHh
Q 023712 80 KEDIDLIAKLGFDAYRFSIS-WSRIFPDG--LGTKI----NMEGITFYNNIIDALLQKG---IQPYVTLYHWDLPLHLHE 149 (278)
Q Consensus 80 ~eDi~l~k~lG~~~~R~si~-WsRi~P~~--~G~~~----n~~~l~~y~~~i~~l~~~G---I~pivtL~H~~~P~wl~~ 149 (278)
.+.|+-.-++|.|++=+.|. |+-=.|.- .|.+. +....+..+++++.+++.- -.--++|.-+|+
T Consensus 10 ~~~v~~~l~~GANaiE~Dv~f~~~~~~~~~~Hg~pcdc~r~c~~~~~f~~~l~~~r~~ttpg~~~~l~lv~lDl------ 83 (265)
T cd08576 10 LEGVDDALDHGANAIEIDVTFWSNGTGWWADHDVPCDCFRGCTAREMFDEILDYRRNGTTPGFRENLIFVWLDL------ 83 (265)
T ss_pred HHHHHHHHHcCCCceeEEEEEccCCcEEEeeCCCccccccCCcHHHHHHHHHHHHHhcCCCCccceeEEEEEEc------
Confidence 46788899999999999985 43222221 12111 2334566777777766542 222333332333
Q ss_pred hhCCCCChHHHHHHHHHHHHHHHHhCCC---cceEEEecCccc
Q 023712 150 SMGGWLNKEIVKYFEIYADTCFASFGDR---VKNWITINEPLQ 189 (278)
Q Consensus 150 ~~ggw~~~~~~~~F~~ya~~v~~~~gd~---V~~w~t~NEP~~ 189 (278)
|-++.......+...+.|+.+.++|+.. +..++++..|.+
T Consensus 84 K~~~~~~~~~~~ag~~la~~ll~~~w~~~~~~ra~~~~s~~~~ 126 (265)
T cd08576 84 KNPDLCGECSINAGRDLARKLLEPYWNGGSGARALYGFSIPSI 126 (265)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEeccc
Confidence 4466667788999999999999999955 888999999985
No 197
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=30.42 E-value=1.2e+02 Score=30.46 Aligned_cols=60 Identities=15% Similarity=0.227 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCCeeeecc-ccc-ccccCCCCCCCChhHHHHHHHHHHHHHhcCC-ccEEeeccCCCc
Q 023712 80 KEDIDLIAKLGFDAYRFSI-SWS-RIFPDGLGTKINMEGITFYNNIIDALLQKGI-QPYVTLYHWDLP 144 (278)
Q Consensus 80 ~eDi~l~k~lG~~~~R~si-~Ws-Ri~P~~~G~~~n~~~l~~y~~~i~~l~~~GI-~pivtL~H~~~P 144 (278)
++-++.|+++|++.+-+++ +-+ ++...- |...+ ++-..+.++.+++.|+ .+-++|. +++|
T Consensus 269 ~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~i-gR~ht---~e~v~~ai~~ar~~Gf~~In~DLI-~GLP 331 (488)
T PRK08207 269 EEKLEVLKKYGVDRISINPQTMNDETLKAI-GRHHT---VEDIIEKFHLAREMGFDNINMDLI-IGLP 331 (488)
T ss_pred HHHHHHHHhcCCCeEEEcCCcCCHHHHHHh-CCCCC---HHHHHHHHHHHHhCCCCeEEEEEE-eCCC
Confidence 6779999999999444444 222 222221 31122 4567889999999999 4545664 4666
No 198
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=30.40 E-value=98 Score=29.36 Aligned_cols=93 Identities=14% Similarity=0.070 Sum_probs=61.4
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeecc--CCCchhhHhh------h
Q 023712 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYH--WDLPLHLHES------M 151 (278)
Q Consensus 80 ~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H--~~~P~wl~~~------~ 151 (278)
.+|++...+.|++.+|+....++. +--.+.|+.+++.|+++.+++.. ...|..+.+. +
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~--------------~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~ 156 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA--------------DVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESY 156 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH--------------HHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhC
Confidence 589999999999999998744332 23478889999999998887753 2234333321 1
Q ss_pred ----------CCCCChHHHHHHHHHHHHHHHHhCCCcce-EEEecCccc
Q 023712 152 ----------GGWLNKEIVKYFEIYADTCFASFGDRVKN-WITINEPLQ 189 (278)
Q Consensus 152 ----------ggw~~~~~~~~F~~ya~~v~~~~gd~V~~-w~t~NEP~~ 189 (278)
.|... ++...++.+.+-+++++.++. +..-|-..+
T Consensus 157 Ga~~i~i~DT~G~~~---P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGl 202 (337)
T PRK08195 157 GAQCVYVVDSAGALL---PEDVRDRVRALRAALKPDTQVGFHGHNNLGL 202 (337)
T ss_pred CCCEEEeCCCCCCCC---HHHHHHHHHHHHHhcCCCCeEEEEeCCCcch
Confidence 34444 455566677777778544433 667777665
No 199
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=30.34 E-value=2e+02 Score=27.08 Aligned_cols=90 Identities=12% Similarity=0.127 Sum_probs=53.1
Q ss_pred cHHHHHHHHHcCCCeeeecccccccccCC-----CCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhCC
Q 023712 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG-----LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGG 153 (278)
Q Consensus 79 y~eDi~l~k~lG~~~~R~si~WsRi~P~~-----~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~gg 153 (278)
-+|.++.||++|++.+- +.+.+-+-|+- ++ ... .+-..+.|+.+++.||++-.++. +++|
T Consensus 140 ~~e~l~~LkeAGl~~i~-~~~~E~~~~~v~~~i~~~-~~~---~~~~~~~i~~a~~~Gi~v~s~~i-~G~~--------- 204 (343)
T TIGR03551 140 VEEALKRLKEAGLDSMP-GTAAEILDDEVRKVICPD-KLS---TAEWIEIIKTAHKLGIPTTATIM-YGHV--------- 204 (343)
T ss_pred HHHHHHHHHHhCccccc-CcchhhcCHHHHHhcCCC-CCC---HHHHHHHHHHHHHcCCcccceEE-EecC---------
Confidence 46789999999999885 22222111110 12 222 34457899999999998876653 2322
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCcceEEEec
Q 023712 154 WLNKEIVKYFEIYADTCFASFGDRVKNWITIN 185 (278)
Q Consensus 154 w~~~~~~~~F~~ya~~v~~~~gd~V~~w~t~N 185 (278)
.+.+.......+.+.+-..++ .+.-.+++|
T Consensus 205 -Et~ed~~~~l~~lr~l~~~~~-~~~~~iP~~ 234 (343)
T TIGR03551 205 -ETPEHWVDHLLILREIQEETG-GFTEFVPLP 234 (343)
T ss_pred -CCHHHHHHHHHHHHHhhHHhC-CeeEEEecc
Confidence 334445555666666655664 344566666
No 200
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=30.25 E-value=3.7e+02 Score=25.39 Aligned_cols=133 Identities=17% Similarity=0.131 Sum_probs=71.3
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchh-------------hHhhh-C----CCCC---hHHHH
Q 023712 103 IFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLH-------------LHESM-G----GWLN---KEIVK 161 (278)
Q Consensus 103 i~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~w-------------l~~~~-g----gw~~---~~~~~ 161 (278)
..|...| -.+.+-+.-++++++.++++|-.+++=|+|.+.-.. +.... + ..+. .++++
T Consensus 63 ~~~~~~~-l~~d~~i~~~~~l~~~vh~~g~~~~~Ql~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~mt~~eI~~ii~ 141 (343)
T cd04734 63 PAFGNLN-ASDDEIIPGFRRLAEAVHAHGAVIMIQLTHLGRRGDGDGSWLPPLAPSAVPEPRHRAVPKAMEEEDIEEIIA 141 (343)
T ss_pred CCCCccc-cCCHHHHHHHHHHHHHHHhcCCeEEEeccCCCcCcCcccCCCcccCCCCCCCCCCCCCCCcCCHHHHHHHHH
Confidence 3343335 567788899999999999999999999999542110 00000 0 0111 35778
Q ss_pred HHHHHHHHHHHHhC-CCcceEEEecCcccccccCcccccc-CCCC--CCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 023712 162 YFEIYADTCFASFG-DRVKNWITINEPLQTAVNGYCTGIF-APGR--HQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDK 237 (278)
Q Consensus 162 ~F~~ya~~v~~~~g-d~V~~w~t~NEP~~~~~~gy~~g~~-~P~~--~~~~~~~~~~~~h~~l~AHa~a~~~~r~~~~~~ 237 (278)
.|++=|+.+.+ -| |-|. +-+-.||+...| .|.. +.+..-. .+-|-+.-....++.+|+.. .
T Consensus 142 ~f~~AA~ra~~-aGfDgVe---------ih~ahGyLl~qFlsp~~N~RtD~yGG---slenR~r~~~eiv~~ir~~v--g 206 (343)
T cd04734 142 AFADAARRCQA-GGLDGVE---------LQAAHGHLIDQFLSPLTNRRTDEYGG---SLENRMRFLLEVLAAVRAAV--G 206 (343)
T ss_pred HHHHHHHHHHH-cCCCEEE---------EccccchHHHHhhCCCcCCCCCcCCC---CHHHHhHHHHHHHHHHHHHc--C
Confidence 88876665443 34 3232 334457765443 3321 1000100 12333444455667777653 2
Q ss_pred CCCeEEceecCcee
Q 023712 238 QGGNIGLVVDCEWA 251 (278)
Q Consensus 238 ~~~~iGi~~~~~~~ 251 (278)
.+-.|++-++...+
T Consensus 207 ~~~~v~iRl~~~~~ 220 (343)
T cd04734 207 PDFIVGIRISGDED 220 (343)
T ss_pred CCCeEEEEeehhhc
Confidence 34557777765443
No 201
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=29.84 E-value=1.6e+02 Score=26.37 Aligned_cols=61 Identities=13% Similarity=0.152 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhCCC---CChHHHHHHHHHHHHHHHHhCCCcce
Q 023712 118 TFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGW---LNKEIVKYFEIYADTCFASFGDRVKN 180 (278)
Q Consensus 118 ~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw---~~~~~~~~F~~ya~~v~~~~gd~V~~ 180 (278)
...+++++.+.++|++-+.-.-|..+|..... ..| .+.+..+.|.+-++.+-++|+++++.
T Consensus 15 ~~~ee~v~~A~~~Gl~~i~~TdH~p~~~~~~~--~~~~~~~~~~~~~~Y~~~i~~l~~~y~~~i~I 78 (253)
T TIGR01856 15 DTLEEVVQEAIQLGFEEICFTEHAPLPFEYPE--ETALDKMAFSSLPEYFKEINRLKKEYADKLKI 78 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEecCCCCcccCCCc--cccccchhHHHHHHHHHHHHHHHHHhhCCCeE
Confidence 34689999999999999999999765432211 112 12233445555556677889876644
No 202
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=29.75 E-value=74 Score=28.43 Aligned_cols=59 Identities=12% Similarity=0.100 Sum_probs=37.8
Q ss_pred cCcHHHHHHHHHcCCCeeeeccccccc-ccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEee
Q 023712 77 HRYKEDIDLIAKLGFDAYRFSISWSRI-FPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (278)
Q Consensus 77 ~~y~eDi~l~k~lG~~~~R~si~WsRi-~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL 138 (278)
...++-|+.++.||++.+|+. ..... .|.. . ..-...++.++++.+.+.++||+..+=.
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~-~~~~~~~~~~-~-~~~~~~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLA-GYDVYYEEKS-E-ETRQRFIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEEC-Cccccccccc-H-HHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 345666899999999999974 11111 1111 1 1112346678888899999999877644
No 203
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=29.41 E-value=4.4e+02 Score=24.03 Aligned_cols=93 Identities=16% Similarity=0.134 Sum_probs=63.8
Q ss_pred cCcHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhCCCCC
Q 023712 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLN 156 (278)
Q Consensus 77 ~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~ 156 (278)
.+..+-++.+++.|+. ++.+++.+--.|.. + ..+ .+++.++++.+.+.|..-+ .|- +. .|...
T Consensus 114 ~~~~~~v~~ak~~G~~-v~~~i~~~f~~~~~-~-~~~---~~~~~~~~~~~~~~Ga~~i-~l~---------DT-~G~~~ 176 (274)
T cd07938 114 ERFEPVAELAKAAGLR-VRGYVSTAFGCPYE-G-EVP---PERVAEVAERLLDLGCDEI-SLG---------DT-IGVAT 176 (274)
T ss_pred HHHHHHHHHHHHCCCe-EEEEEEeEecCCCC-C-CCC---HHHHHHHHHHHHHcCCCEE-EEC---------CC-CCccC
Confidence 3344558999999985 77777766555665 5 666 4789999999999997643 442 22 45565
Q ss_pred hHHHHHHHHHHHHHHHHhCCCcceEEEecCccc
Q 023712 157 KEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (278)
Q Consensus 157 ~~~~~~F~~ya~~v~~~~gd~V~~w~t~NEP~~ 189 (278)
| ..+.++.+.+.+++.+.--.+.+-|-..+
T Consensus 177 P---~~v~~lv~~l~~~~~~~~i~~H~Hnd~Gl 206 (274)
T cd07938 177 P---AQVRRLLEAVLERFPDEKLALHFHDTRGQ 206 (274)
T ss_pred H---HHHHHHHHHHHHHCCCCeEEEEECCCCCh
Confidence 5 45556677777778654345778888775
No 204
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=29.10 E-value=1.9e+02 Score=28.39 Aligned_cols=61 Identities=18% Similarity=0.340 Sum_probs=38.9
Q ss_pred cHHHHHHHHHcCCCeeeeccc-cc-ccccCCCCCCCChhHHHHHHHHHHHHHhcCC-ccEEeeccCCCc
Q 023712 79 YKEDIDLIAKLGFDAYRFSIS-WS-RIFPDGLGTKINMEGITFYNNIIDALLQKGI-QPYVTLYHWDLP 144 (278)
Q Consensus 79 y~eDi~l~k~lG~~~~R~si~-Ws-Ri~P~~~G~~~n~~~l~~y~~~i~~l~~~GI-~pivtL~H~~~P 144 (278)
-+|.+++|+++|++.+.++++ =+ ++...- |..-+ .+-..+.++.+++.|+ .+.++|. +++|
T Consensus 150 t~e~l~~l~~aG~~risiGvqS~~~~~L~~l-~r~~~---~~~~~~ai~~l~~~G~~~v~~dli-~GlP 213 (453)
T PRK09249 150 DLEMLDALRELGFNRLSLGVQDFDPEVQKAV-NRIQP---FEFTFALVEAARELGFTSINIDLI-YGLP 213 (453)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCCHHHHHHh-CCCCC---HHHHHHHHHHHHHcCCCcEEEEEE-ccCC
Confidence 468899999999997777763 22 121111 20222 3567788999999999 4555553 4555
No 205
>PRK06256 biotin synthase; Validated
Probab=28.80 E-value=1e+02 Score=28.78 Aligned_cols=57 Identities=16% Similarity=0.239 Sum_probs=39.1
Q ss_pred CcHHHHHHHHHcCCCeeeecc-cccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEee
Q 023712 78 RYKEDIDLIAKLGFDAYRFSI-SWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (278)
Q Consensus 78 ~y~eDi~l~k~lG~~~~R~si-~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL 138 (278)
.-+|.++.|+++|++.+-+++ +=+++.+.-.. .-+ ++.+.+.|+.+++.||++..++
T Consensus 150 l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i~~-~~t---~~~~i~~i~~a~~~Gi~v~~~~ 207 (336)
T PRK06256 150 LTEEQAERLKEAGVDRYNHNLETSRSYFPNVVT-THT---YEDRIDTCEMVKAAGIEPCSGG 207 (336)
T ss_pred CCHHHHHHHHHhCCCEEecCCccCHHHHhhcCC-CCC---HHHHHHHHHHHHHcCCeeccCe
Confidence 457889999999999998876 32334443211 122 4567789999999999765443
No 206
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=28.65 E-value=2.1e+02 Score=21.06 Aligned_cols=40 Identities=25% Similarity=0.408 Sum_probs=31.7
Q ss_pred HHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEee
Q 023712 84 DLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (278)
Q Consensus 84 ~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL 138 (278)
..++.+|+.++|=| .+ .| +.+-+.+++..|+ .|..+.+|.
T Consensus 27 ~~~~~~G~~~iRGS-------s~-rg------g~~Alr~~~~~lk-~G~~~~itp 66 (74)
T PF04028_consen 27 RVLERFGFRTIRGS-------SS-RG------GARALREMLRALK-EGYSIAITP 66 (74)
T ss_pred HHHHHcCCCeEEeC-------CC-Cc------HHHHHHHHHHHHH-CCCeEEEeC
Confidence 78999999999999 22 24 4677899999988 787777776
No 207
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=28.45 E-value=1.8e+02 Score=25.83 Aligned_cols=63 Identities=17% Similarity=0.314 Sum_probs=37.8
Q ss_pred cHHHHHHHHHcCCCeeeecccccccccCCCC-CCCChhHHHHHHHHHHHHHhcCCccEEe-eccCCCc
Q 023712 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLG-TKINMEGITFYNNIIDALLQKGIQPYVT-LYHWDLP 144 (278)
Q Consensus 79 y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G-~~~n~~~l~~y~~~i~~l~~~GI~pivt-L~H~~~P 144 (278)
.++-|++++++|.+.+++...+ . |.+.. ...-....+..+++.+.+.+.||+..+= ++|++.|
T Consensus 87 ~~~~i~~a~~lga~~i~~~~g~--~-~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~ 151 (258)
T PRK09997 87 VAAAIRYARALGNKKINCLVGK--T-PAGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIP 151 (258)
T ss_pred HHHHHHHHHHhCCCEEEECCCC--C-CCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCC
Confidence 5667899999999999864322 1 21100 0111123455677777788999887774 3455444
No 208
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=28.39 E-value=2.8e+02 Score=26.46 Aligned_cols=126 Identities=10% Similarity=0.002 Sum_probs=68.4
Q ss_pred cHHHHHHHHHcCCCeeeecc-cc-cccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhCCCCC
Q 023712 79 YKEDIDLIAKLGFDAYRFSI-SW-SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLN 156 (278)
Q Consensus 79 y~eDi~l~k~lG~~~~R~si-~W-sRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~ 156 (278)
-.+.++.|+++|++.+.+++ |= +++...- |...+ .+-..+.++.+++.++.+.++|. +++|. .+
T Consensus 103 ~~e~L~~l~~~GvnrislGvQS~~d~vL~~l-~R~~~---~~~~~~ai~~~~~~~~~v~~dli-~GlPg---------qt 168 (380)
T PRK09057 103 EAGRFRGYRAAGVNRVSLGVQALNDADLRFL-GRLHS---VAEALAAIDLAREIFPRVSFDLI-YARPG---------QT 168 (380)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHc-CCCCC---HHHHHHHHHHHHHhCccEEEEee-cCCCC---------CC
Confidence 34999999999999777776 22 2333222 31223 23456778888888888888885 45652 22
Q ss_pred hHHHHHHHHHHHHHHHHhCCCcceEEEecCcccccccCccccccC-CCCCCCCCchHHHHHHHHHHHH
Q 023712 157 KEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIFA-PGRHQHSSTEPYLVAHHQILAH 223 (278)
Q Consensus 157 ~~~~~~F~~ya~~v~~~~gd~V~~w~t~NEP~~~~~~gy~~g~~~-P~~~~~~~~~~~~~~h~~l~AH 223 (278)
.+.+.+=.+.+.+-=-++|..+...=||+.....-+..|.+. |... ...+.++.+..++.++
T Consensus 169 ---~~~~~~~l~~~~~l~p~~is~y~L~~~~gT~l~~~~~~g~~~~~~~~--~~~~~~~~~~~~L~~~ 231 (380)
T PRK09057 169 ---LAAWRAELKEALSLAADHLSLYQLTIEEGTAFYGLHAAGKLILPDED--LAADLYELTQEITAAA 231 (380)
T ss_pred ---HHHHHHHHHHHHhcCCCeEEeecceecCCChHHHHHhcCCCCCCChH--HHHHHHHHHHHHHHHc
Confidence 222333233333321246777777778875433223334332 2110 1123455555555443
No 209
>PLN02411 12-oxophytodienoate reductase
Probab=27.92 E-value=4.6e+02 Score=25.31 Aligned_cols=124 Identities=16% Similarity=0.175 Sum_probs=72.4
Q ss_pred CCChhHHHHHHHHHHHHHhcCCccEEeeccCCC---chhh--------------H------hhhC---C------CC---
Q 023712 111 KINMEGITFYNNIIDALLQKGIQPYVTLYHWDL---PLHL--------------H------ESMG---G------WL--- 155 (278)
Q Consensus 111 ~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~---P~wl--------------~------~~~g---g------w~--- 155 (278)
-++.+-+.-++++.+.++++|-++++=|+|-+- |.+. . ...+ . .+
T Consensus 80 i~~d~~i~~~~~l~~avH~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~pr~mt~~e 159 (391)
T PLN02411 80 IYSDEQVEAWKKVVDAVHAKGSIIFCQLWHVGRASHQVYQPGGAAPISSTNKPISERWRILMPDGSYGKYPKPRALETSE 159 (391)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCEEEEeccCCCCCCccccccCCCCccCCccccccCCcccccCCccccCCCCCccCCHHH
Confidence 568888999999999999999999999999331 1000 0 0000 0 01
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCcceEEEecCcccccccCcccccc-CCCCCCCCCchHH-HHHHHHHHHHHHHHHHHHHH
Q 023712 156 NKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIF-APGRHQHSSTEPY-LVAHHQILAHAAAFSVYQRK 233 (278)
Q Consensus 156 ~~~~~~~F~~ya~~v~~~~gd~V~~w~t~NEP~~~~~~gy~~g~~-~P~~~~~~~~~~~-~~~h~~l~AHa~a~~~~r~~ 233 (278)
-.++++.|++=|+.+.+.==|-|. +.+-.||+...| .|..- ..+.-| =.+-|=++--..+++.+|+.
T Consensus 160 I~~ii~~f~~AA~rA~~AGFDGVE---------IH~AhGYLl~QFLSp~tN--~RtDeYGGSlENR~RF~lEIi~aVr~~ 228 (391)
T PLN02411 160 IPEVVEHYRQAALNAIRAGFDGIE---------IHGAHGYLIDQFLKDGIN--DRTDEYGGSIENRCRFLMQVVQAVVSA 228 (391)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEE---------EccccchHHHHhCCCccC--CCCCcCCCCHHHHhHHHHHHHHHHHHH
Confidence 124677888766665542223342 346678887544 45320 001111 12345555566677888876
Q ss_pred hcCCCCCeEEceecC
Q 023712 234 YKDKQGGNIGLVVDC 248 (278)
Q Consensus 234 ~~~~~~~~iGi~~~~ 248 (278)
.. ++ .||+-++.
T Consensus 229 vg--~d-~vgvRiS~ 240 (391)
T PLN02411 229 IG--AD-RVGVRVSP 240 (391)
T ss_pred cC--CC-eEEEEEcc
Confidence 42 34 59988885
No 210
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=27.82 E-value=4.4e+02 Score=24.24 Aligned_cols=54 Identities=20% Similarity=0.334 Sum_probs=37.6
Q ss_pred cHHHHHHHHHcCCCeee-eccc-c-----cccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeec
Q 023712 79 YKEDIDLIAKLGFDAYR-FSIS-W-----SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (278)
Q Consensus 79 y~eDi~l~k~lG~~~~R-~si~-W-----sRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~ 139 (278)
.+|.++.||++|++.+- .+++ - .++.|. ..+ .+-+.+.+..+++.||++..++.
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~----~~t---~~~~l~~i~~a~~~Gi~~~s~~i 166 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPN----KLS---SDEWLEVIKTAHRLGIPTTATMM 166 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCC----CCC---HHHHHHHHHHHHHcCCCceeeEE
Confidence 36889999999999885 2431 1 122232 233 34567999999999999987764
No 211
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=27.74 E-value=66 Score=29.83 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHHhcCCccEEeeccCCCch
Q 023712 114 MEGITFYNNIIDALLQKGIQPYVTLYHWDLPL 145 (278)
Q Consensus 114 ~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~ 145 (278)
.+|++-+.++|+.+++.|+.+|+++=..|+|.
T Consensus 69 ~~G~~~l~~~i~~l~~~g~~VilD~K~~DI~n 100 (278)
T PRK00125 69 AEGLAQLERTIAYLREAGVLVIADAKRGDIGS 100 (278)
T ss_pred chhhhHHHHHHHHHHHCCCcEEEEeecCChHH
Confidence 45688899999999999999999999999985
No 212
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=27.63 E-value=1.8e+02 Score=27.06 Aligned_cols=50 Identities=14% Similarity=0.082 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCCccEEeeccCCCchhhHhhhCCCCChHHHHHHHHHHHHHHHHhC
Q 023712 119 FYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFG 175 (278)
Q Consensus 119 ~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v~~~~g 175 (278)
-..+-|..|+++|+++++++--++-.. ...++...+.|++....+++.|+
T Consensus 61 ~~~~~i~~~q~~G~KVllSiGG~~~~~-------~~~~~~~~~~fa~sl~~~~~~~g 110 (312)
T cd02871 61 EFKADIKALQAKGKKVLISIGGANGHV-------DLNHTAQEDNFVDSIVAIIKEYG 110 (312)
T ss_pred HHHHHHHHHHHCCCEEEEEEeCCCCcc-------ccCCHHHHHHHHHHHHHHHHHhC
Confidence 457778899999999999985433211 01233444445554444445454
No 213
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=27.52 E-value=1.1e+02 Score=24.69 Aligned_cols=59 Identities=19% Similarity=0.176 Sum_probs=39.6
Q ss_pred cHHHHHHHHHcCCCeeeeccc-ccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeec
Q 023712 79 YKEDIDLIAKLGFDAYRFSIS-WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (278)
Q Consensus 79 y~eDi~l~k~lG~~~~R~si~-WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~ 139 (278)
-+++++.|+++|+..+.+|++ .+.-.-.... -....++.+-+.|+.+.+.|+.+.+++.
T Consensus 87 ~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~i 146 (204)
T cd01335 87 TEELLKELKELGLDGVGVSLDSGDEEVADKIR--GSGESFKERLEALKELREAGLGLSTTLL 146 (204)
T ss_pred CHHHHHHHHhCCCceEEEEcccCCHHHHHHHh--cCCcCHHHHHHHHHHHHHcCCCceEEEE
Confidence 478999999999999999985 3222111100 0111256778888889998888777663
No 214
>PLN03153 hypothetical protein; Provisional
Probab=27.29 E-value=85 Score=31.84 Aligned_cols=66 Identities=18% Similarity=0.257 Sum_probs=36.8
Q ss_pred HhcC-CccEEeeccCCCchhhHhhhCCCCChHHHHHHHHHHH----HHHHHh--CCCcceEEEecCcccccccCcccccc
Q 023712 128 LQKG-IQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYAD----TCFASF--GDRVKNWITINEPLQTAVNGYCTGIF 200 (278)
Q Consensus 128 ~~~G-I~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~----~v~~~~--gd~V~~w~t~NEP~~~~~~gy~~g~~ 200 (278)
.+.| +.|+|+||||+.= +.-|.+-...+.++.+..-|+ .++++. +|+..-|..- ...||....+
T Consensus 328 les~p~~P~vSlHH~~~~---~p~fP~~~~~~~~~~l~~a~~~d~~~~lq~siCyd~~~~w~fs------vSwGysV~~y 398 (537)
T PLN03153 328 LSSHPIAPFVSIHHVEAV---DPFYPGLSSLDSLKLFTRAMKVDPRSFLQRSICYDHTHHLTFS------ISLGYVVQVF 398 (537)
T ss_pred hhcCCCCCceeeeecccc---ccccCCcchHHHHHHHHHHhhcCchhHHHHHHhhhcccceeEE------EeccEEEEEe
Confidence 4555 9999999999861 111233344456666665442 223333 4555556544 5567765555
Q ss_pred CC
Q 023712 201 AP 202 (278)
Q Consensus 201 ~P 202 (278)
+-
T Consensus 399 ~~ 400 (537)
T PLN03153 399 PS 400 (537)
T ss_pred cC
Confidence 43
No 215
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=27.20 E-value=5e+02 Score=23.92 Aligned_cols=93 Identities=14% Similarity=0.080 Sum_probs=63.0
Q ss_pred cCcHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhCCCCC
Q 023712 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLN 156 (278)
Q Consensus 77 ~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~ 156 (278)
.+.++-++.+++.|+. ++.+|+=+---|.. | ..+ .+++.++++.+.+.|..- ++|- |. .|..+
T Consensus 120 ~~~~~~v~~ak~~g~~-v~~~i~~~~~~~~~-~-~~~---~~~~~~~~~~~~~~G~d~-i~l~---------DT-~G~~~ 182 (287)
T PRK05692 120 ERFEPVAEAAKQAGVR-VRGYVSCVLGCPYE-G-EVP---PEAVADVAERLFALGCYE-ISLG---------DT-IGVGT 182 (287)
T ss_pred HHHHHHHHHHHHcCCE-EEEEEEEEecCCCC-C-CCC---HHHHHHHHHHHHHcCCcE-EEec---------cc-cCccC
Confidence 3456678999999974 67666654444554 5 666 479999999999999874 3442 22 56666
Q ss_pred hHHHHHHHHHHHHHHHHhCCCcceEEEecCccc
Q 023712 157 KEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (278)
Q Consensus 157 ~~~~~~F~~ya~~v~~~~gd~V~~w~t~NEP~~ 189 (278)
| ....++.+.+.+++++.--....-|-..+
T Consensus 183 P---~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gl 212 (287)
T PRK05692 183 P---GQVRAVLEAVLAEFPAERLAGHFHDTYGQ 212 (287)
T ss_pred H---HHHHHHHHHHHHhCCCCeEEEEecCCCCc
Confidence 5 44556677777888753334678887765
No 216
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=26.84 E-value=4.8e+02 Score=24.67 Aligned_cols=129 Identities=17% Similarity=0.176 Sum_probs=72.2
Q ss_pred CCChhHHHHHHHHHHHHHhcCCccEEeeccCCC---chhh-----------HhhhCCC-----CC----hHHHHHHHHHH
Q 023712 111 KINMEGITFYNNIIDALLQKGIQPYVTLYHWDL---PLHL-----------HESMGGW-----LN----KEIVKYFEIYA 167 (278)
Q Consensus 111 ~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~---P~wl-----------~~~~ggw-----~~----~~~~~~F~~ya 167 (278)
-++.+-+.-++++++.++++|-.+++=|+|-+- +.+. .....+. .+ .++++.|++=|
T Consensus 71 ~~~d~~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA 150 (353)
T cd04735 71 ADDDSDIPGLRKLAQAIKSKGAKAILQIFHAGRMANPALVPGGDVVSPSAIAAFRPGAHTPRELTHEEIEDIIDAFGEAT 150 (353)
T ss_pred ecChhhhHHHHHHHHHHHhCCCeEEEEecCCCCCCCccccCCCceecCCCCcccCCCCCCCccCCHHHHHHHHHHHHHHH
Confidence 567778899999999999999999999999431 1110 0000000 11 35677888766
Q ss_pred HHHHHHhC-CCcceEEEecCcccccccCcccccc-CCCCCC-CCCchHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCeE
Q 023712 168 DTCFASFG-DRVKNWITINEPLQTAVNGYCTGIF-APGRHQ-HSSTEPYLVAHHQILAHAAAFSVYQRKYKD--KQGGNI 242 (278)
Q Consensus 168 ~~v~~~~g-d~V~~w~t~NEP~~~~~~gy~~g~~-~P~~~~-~~~~~~~~~~h~~l~AHa~a~~~~r~~~~~--~~~~~i 242 (278)
+.+.+ -| |-|. +-+-.||+...| .|.... .+. .--.+-|-+.--...++.+|+.... .++-.|
T Consensus 151 ~~a~~-aGfDgVe---------ih~ahGyLl~qFlsp~~N~R~D~--yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v 218 (353)
T cd04735 151 RRAIE-AGFDGVE---------IHGANGYLIQQFFSPHSNRRTDE--WGGSLENRMRFPLAVVKAVQEVIDKHADKDFIL 218 (353)
T ss_pred HHHHH-cCCCEEE---------EccccchHHHHhcCCccCCCCcc--cCCcHHHHHHHHHHHHHHHHHHhccccCCCceE
Confidence 66544 33 3332 234567776544 343210 011 0012345555555667777765310 136678
Q ss_pred EceecCcee
Q 023712 243 GLVVDCEWA 251 (278)
Q Consensus 243 Gi~~~~~~~ 251 (278)
|+-++...+
T Consensus 219 ~~R~s~~~~ 227 (353)
T cd04735 219 GYRFSPEEP 227 (353)
T ss_pred EEEECcccc
Confidence 888876543
No 217
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=26.50 E-value=4.3e+02 Score=25.46 Aligned_cols=93 Identities=16% Similarity=0.190 Sum_probs=53.0
Q ss_pred cCcHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeec-cCCCchhhHhhhCCCC
Q 023712 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY-HWDLPLHLHESMGGWL 155 (278)
Q Consensus 77 ~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~-H~~~P~wl~~~~ggw~ 155 (278)
-...+-++.++++|++.+= +....+.|-+ - ...... ...+++-..|.++||++...+. -+..|.+ +.|+..
T Consensus 32 ~~~~e~i~~la~~GfdgVE--~~~~dl~P~~-~-~~~e~~-~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~---~~g~la 103 (382)
T TIGR02631 32 LDPVEAVHKLAELGAYGVT--FHDDDLIPFG-A-PPQERD-QIVRRFKKALDETGLKVPMVTTNLFSHPVF---KDGGFT 103 (382)
T ss_pred cCHHHHHHHHHHhCCCEEE--ecccccCCCC-C-ChhHHH-HHHHHHHHHHHHhCCeEEEeeccccCCccc---cCCCCC
Confidence 3567889999999999884 3444566653 1 111111 3467788889999999765333 2322333 126776
Q ss_pred ChH--HHHHHHHHHH---HHHHHhCCC
Q 023712 156 NKE--IVKYFEIYAD---TCFASFGDR 177 (278)
Q Consensus 156 ~~~--~~~~F~~ya~---~v~~~~gd~ 177 (278)
+++ +.+.-.++.+ .++..+|-.
T Consensus 104 s~d~~vR~~ai~~~kraId~A~eLGa~ 130 (382)
T TIGR02631 104 SNDRSVRRYALRKVLRNMDLGAELGAE 130 (382)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 642 2222222332 245667654
No 218
>PF01624 MutS_I: MutS domain I C-terminus.; InterPro: IPR007695 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the N-terminal domain of proteins in the MutS family of DNA mismatch repair proteins, as well as closely related proteins. The N-terminal domain of MutS is responsible for mismatch recognition and forms a 6-stranded mixed beta-sheet surrounded by three alpha-helices, which is similar to the structure of tRNA endonuclease. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 3THY_B 3THZ_B 3THW_B 3THX_B 2WTU_A 1OH7_A ....
Probab=26.33 E-value=60 Score=25.40 Aligned_cols=59 Identities=22% Similarity=0.398 Sum_probs=40.2
Q ss_pred CcccCcHHHHHHHHH-cCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEee
Q 023712 74 DHYHRYKEDIDLIAK-LGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (278)
Q Consensus 74 d~y~~y~eDi~l~k~-lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL 138 (278)
+||+-|.+|...+++ +|++..........-.|.- | +.. ..++..+..|.++|.++.|.=
T Consensus 25 ~fYe~y~~DA~~~a~~l~~~~~~~~~~~~~~~~~~-g--fp~---~~l~~~l~~Ll~~G~~V~i~~ 84 (113)
T PF01624_consen 25 DFYEAYGEDAEFVAEILGLKLSKRKTGGGKSVPMA-G--FPK---SQLDKYLKKLLEAGYRVAIYE 84 (113)
T ss_dssp TEEEEECHHHHHHHHHHTSSSEEEECSSSECEEEE-E--EEG---GGHHHHHHHHHHTT-EEEEEE
T ss_pred CEEEEEccCHHHHHHhccceeeeccccccccccEe-c--ccH---HHHHHHHHHHHHcCCEEEEEE
Confidence 699999999775555 8888876654433323443 4 332 457888888999999988754
No 219
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=25.96 E-value=2.3e+02 Score=25.97 Aligned_cols=42 Identities=24% Similarity=0.348 Sum_probs=30.9
Q ss_pred ccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHH
Q 023712 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDAL 127 (278)
Q Consensus 76 y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l 127 (278)
....++||+.++++|++-+=|++. -| +| .+|.+. ..++++.+
T Consensus 72 ~~~M~~di~~~~~~GadGvV~G~L----~~--dg-~vD~~~---~~~Li~~a 113 (248)
T PRK11572 72 FAAMLEDIATVRELGFPGLVTGVL----DV--DG-HVDMPR---MRKIMAAA 113 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeE----CC--CC-CcCHHH---HHHHHHHh
Confidence 355678999999999999999874 23 36 899654 45666655
No 220
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=25.72 E-value=2.1e+02 Score=27.12 Aligned_cols=95 Identities=21% Similarity=0.283 Sum_probs=60.2
Q ss_pred cCcHHHHHHHHHcCCCeeeecc--cccccccC-C------CCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCC-----
Q 023712 77 HRYKEDIDLIAKLGFDAYRFSI--SWSRIFPD-G------LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWD----- 142 (278)
Q Consensus 77 ~~y~eDi~l~k~lG~~~~R~si--~WsRi~P~-~------~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~----- 142 (278)
.+.++=++++++.|+|++=+.+ ++-.|-=. . .| . ....+.=...+++.|+++||.||.-+.-|-
T Consensus 13 ~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~g-a-~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~la 90 (316)
T PF13200_consen 13 ERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIG-A-VKPYIKDLKALVKKLKEHGIYPIARIVVFKDPVLA 90 (316)
T ss_pred HHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcc-c-ccccccCHHHHHHHHHHCCCEEEEEEEEecChHHh
Confidence 3567889999999999999887 34444211 1 02 1 111123468899999999999998766542
Q ss_pred --CchhhHhhhC----------CCCC---hHHHHHHHHHHHHHHHH
Q 023712 143 --LPLHLHESMG----------GWLN---KEIVKYFEIYADTCFAS 173 (278)
Q Consensus 143 --~P~wl~~~~g----------gw~~---~~~~~~F~~ya~~v~~~ 173 (278)
.|.|...+-+ .|.+ +++.+.-.+-|+.+++.
T Consensus 91 ~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~ 136 (316)
T PF13200_consen 91 EAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL 136 (316)
T ss_pred hhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc
Confidence 3444331111 2665 46777777777777644
No 221
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=25.29 E-value=2.7e+02 Score=27.08 Aligned_cols=61 Identities=13% Similarity=0.227 Sum_probs=40.3
Q ss_pred cHHHHHHHHHcCCCeeeecc-cc-cccccCCCCCCCChhHHHHHHHHHHHHHhcCCccE-EeeccCCCc
Q 023712 79 YKEDIDLIAKLGFDAYRFSI-SW-SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLP 144 (278)
Q Consensus 79 y~eDi~l~k~lG~~~~R~si-~W-sRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pi-vtL~H~~~P 144 (278)
-++.+++|+++|++.+.+++ += +++...- |...+ .+-..+.|+.|++.|+..+ ++|. +++|
T Consensus 140 t~e~l~~l~~~G~~rvslGvQS~~~~~L~~l-~R~~~---~~~~~~ai~~l~~~g~~~i~~dlI-~GlP 203 (430)
T PRK08208 140 TAEKLALLAARGVNRLSIGVQSFHDSELHAL-HRPQK---RADVHQALEWIRAAGFPILNIDLI-YGIP 203 (430)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHh-CCCCC---HHHHHHHHHHHHHcCCCeEEEEee-cCCC
Confidence 36889999999999777776 22 2232221 31223 3567889999999999864 5553 4566
No 222
>PRK07106 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; Provisional
Probab=25.17 E-value=89 Score=30.42 Aligned_cols=52 Identities=23% Similarity=0.365 Sum_probs=43.3
Q ss_pred CCccCCcccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEe
Q 023712 69 GDVAVDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVT 137 (278)
Q Consensus 69 ~~~a~d~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivt 137 (278)
.-+++|-+-.+++-|+..++.|++++ |+|- | .++. +++|+.+-++||.-+.|
T Consensus 332 ~vlASDAFFPF~D~Id~Aa~~GV~aI--------iQPG--G-SiRD------~evI~aane~giaMvfT 383 (390)
T PRK07106 332 VALGSDAFFPFGDNIERAAKSGVKYI--------AQPG--G-SIRD------DNVIETCNKYGMTMAFT 383 (390)
T ss_pred eEEEecccCCCCchHHHHHHcCCEEE--------ECCC--C-CCCc------HHHHHHHHHhCCEEEEC
Confidence 34689999999999999999999998 8885 5 5553 68999999999876654
No 223
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=25.07 E-value=2.6e+02 Score=28.76 Aligned_cols=93 Identities=15% Similarity=0.057 Sum_probs=50.5
Q ss_pred cHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchh----hHh-----
Q 023712 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLH----LHE----- 149 (278)
Q Consensus 79 y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~w----l~~----- 149 (278)
-++|++..++.|++.+|+..+-+.+ +-....++.++++|..+.+++..-+.|.+ +.+
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l 163 (592)
T PRK09282 98 VEKFVEKAAENGIDIFRIFDALNDV--------------RNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKEL 163 (592)
T ss_pred hHHHHHHHHHCCCCEEEEEEecChH--------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHH
Confidence 3567889999999999998764443 12234445555555555544432112311 000
Q ss_pred -----------hhCCCCChHHHHHHHHHHHHHHHHhCCCcceEEEecCccc
Q 023712 150 -----------SMGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (278)
Q Consensus 150 -----------~~ggw~~~~~~~~F~~ya~~v~~~~gd~V~~w~t~NEP~~ 189 (278)
.-.|-..|. ...+.++.+-++++ ..-...+.|-..+
T Consensus 164 ~~~Gad~I~i~Dt~G~~~P~---~~~~lv~~lk~~~~-~pi~~H~Hnt~Gl 210 (592)
T PRK09282 164 EEMGCDSICIKDMAGLLTPY---AAYELVKALKEEVD-LPVQLHSHCTSGL 210 (592)
T ss_pred HHcCCCEEEECCcCCCcCHH---HHHHHHHHHHHhCC-CeEEEEEcCCCCc
Confidence 013445554 34555666666774 2234667777665
No 224
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=25.00 E-value=4.1e+02 Score=25.40 Aligned_cols=130 Identities=15% Similarity=0.065 Sum_probs=74.9
Q ss_pred CCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCC-------------chhhHhhh--CCC------C---ChHHHHHHH
Q 023712 109 GTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL-------------PLHLHESM--GGW------L---NKEIVKYFE 164 (278)
Q Consensus 109 G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~-------------P~wl~~~~--ggw------~---~~~~~~~F~ 164 (278)
| -++.+-+.-++++++.++++|-.+++=|+|-+- |.-+.... +.. + -.++++.|+
T Consensus 75 ~-l~~d~~i~~~~~l~~~vh~~G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~ 153 (370)
T cd02929 75 R-LWDDGDIRNLAAMTDAVHKHGALAGIELWHGGAHAPNRESRETPLGPSQLPSEFPTGGPVQAREMDKDDIKRVRRWYV 153 (370)
T ss_pred C-cCCHHHHHHHHHHHHHHHHCCCeEEEecccCCCCCCccCCCCCccCCCCCCCCccccCCCCCccCCHHHHHHHHHHHH
Confidence 5 678889999999999999999999999999532 00000000 000 0 125788888
Q ss_pred HHHHHHHHHhCCCcceEEEecCcccccccCcccccc-CCCC--CCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCe
Q 023712 165 IYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIF-APGR--HQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGN 241 (278)
Q Consensus 165 ~ya~~v~~~~gd~V~~w~t~NEP~~~~~~gy~~g~~-~P~~--~~~~~~~~~~~~h~~l~AHa~a~~~~r~~~~~~~~~~ 241 (278)
+=|+.+.+.=-|-|. +-+-.||+...| .|.. +. + +.--.+-|-+.--..+++.+|+.. .++-.
T Consensus 154 ~AA~ra~~aGfDgVE---------ih~ahGyLl~QFlSp~~N~Rt-D--~yGGslenR~Rf~~eii~aIr~~v--g~~~~ 219 (370)
T cd02929 154 DAALRARDAGFDIVY---------VYAAHGYLPLQFLLPRYNKRT-D--EYGGSLENRARFWRETLEDTKDAV--GDDCA 219 (370)
T ss_pred HHHHHHHHcCCCEEE---------EcccccchHHHhhCccccCCc-c--ccCCChHhhhHHHHHHHHHHHHHc--CCCce
Confidence 866665443213332 234567776543 3431 10 1 000123344555566778888764 24667
Q ss_pred EEceecCceeee
Q 023712 242 IGLVVDCEWAEA 253 (278)
Q Consensus 242 iGi~~~~~~~~p 253 (278)
||+-++.....|
T Consensus 220 v~vRls~~~~~~ 231 (370)
T cd02929 220 VATRFSVDELIG 231 (370)
T ss_pred EEEEecHHHhcC
Confidence 888887654444
No 225
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=24.74 E-value=4.2e+02 Score=25.11 Aligned_cols=92 Identities=15% Similarity=0.195 Sum_probs=54.6
Q ss_pred HHHHHHHHHcCCCeeeecc-cc-cccccCCCCCCCChhHHHHHHHHHHHHHhcCCc-cEEeeccCCCchhhHhhhCCCCC
Q 023712 80 KEDIDLIAKLGFDAYRFSI-SW-SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQ-PYVTLYHWDLPLHLHESMGGWLN 156 (278)
Q Consensus 80 ~eDi~l~k~lG~~~~R~si-~W-sRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~-pivtL~H~~~P~wl~~~~ggw~~ 156 (278)
+|.+++|+++|++.+-+++ += +++...- |...+ .+-+.+.++.+++.|+. +-++|. +++|. .+
T Consensus 103 ~e~l~~lk~~G~nrisiGvQS~~d~vL~~l-~R~~~---~~~~~~ai~~lr~~G~~~v~~dlI-~GlPg---------qt 168 (353)
T PRK05904 103 QSQINLLKKNKVNRISLGVQSMNNNILKQL-NRTHT---IQDSKEAINLLHKNGIYNISCDFL-YCLPI---------LK 168 (353)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHc-CCCCC---HHHHHHHHHHHHHcCCCcEEEEEe-ecCCC---------CC
Confidence 6889999999999666665 22 2333222 31233 35677899999999997 445554 46662 22
Q ss_pred hHHHHHHHHHHHHHHHHhC-CCcceEEEecCccc
Q 023712 157 KEIVKYFEIYADTCFASFG-DRVKNWITINEPLQ 189 (278)
Q Consensus 157 ~~~~~~F~~ya~~v~~~~g-d~V~~w~t~NEP~~ 189 (278)
.+.|.+=.+.+. +++ +.+..+...=||..
T Consensus 169 ---~e~~~~tl~~~~-~l~p~~is~y~L~~~~gT 198 (353)
T PRK05904 169 ---LKDLDEVFNFIL-KHKINHISFYSLEIKEGS 198 (353)
T ss_pred ---HHHHHHHHHHHH-hcCCCEEEEEeeEecCCC
Confidence 344444444433 344 45655555557764
No 226
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=24.66 E-value=1e+02 Score=28.55 Aligned_cols=31 Identities=13% Similarity=0.146 Sum_probs=27.6
Q ss_pred CCChhHHHHHHHHHHHHHhcCCccEEeeccC
Q 023712 111 KINMEGITFYNNIIDALLQKGIQPYVTLYHW 141 (278)
Q Consensus 111 ~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~ 141 (278)
.+|+.+-....++|.++++.|+.++++.|+.
T Consensus 168 gLD~~~~~~l~~~l~~l~~~g~till~sH~l 198 (306)
T PRK13537 168 GLDPQARHLMWERLRSLLARGKTILLTTHFM 198 (306)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 5899999999999999998999999998863
No 227
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=24.52 E-value=1.2e+02 Score=30.74 Aligned_cols=50 Identities=30% Similarity=0.494 Sum_probs=41.4
Q ss_pred ccCCcccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEe
Q 023712 71 VAVDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVT 137 (278)
Q Consensus 71 ~a~d~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivt 137 (278)
+++|.+-.+.+-|+.|++.|++++ ++|. | .++. +++|+.+.++||..+.|
T Consensus 457 ~aSDafFPf~Dtie~aa~~Gv~aI--------iqPg--G-SirD------~evI~aAne~gIamvfT 506 (513)
T PRK00881 457 LASDAFFPFRDGVEAAAKAGITAI--------IQPG--G-SIRD------EEVIAAADEHGIAMVFT 506 (513)
T ss_pred EEeeCCCCchhHHHHHHHcCCeEE--------EeCC--C-CCCh------HHHHHHHHHcCCEEEEC
Confidence 457888888899999999999987 7885 4 5664 68999999999988876
No 228
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=24.51 E-value=1.8e+02 Score=24.86 Aligned_cols=49 Identities=18% Similarity=0.323 Sum_probs=36.8
Q ss_pred HHHHHHHHcCCC--eeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCc
Q 023712 81 EDIDLIAKLGFD--AYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (278)
Q Consensus 81 eDi~l~k~lG~~--~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P 144 (278)
.|.+.+|..|++ .+|.+ +|.+ ..|+ .+..-++.++++|| .+..+||..|
T Consensus 16 ~dw~~vk~~Gi~faiikat--------eG~~-~~D~----~~~~n~~~A~~aGl--~vG~Yhf~~~ 66 (192)
T cd06522 16 ADYNKLKNYGVKAVIVKLT--------EGTT-YRNP----YAASQIANAKAAGL--KVSAYHYAHY 66 (192)
T ss_pred HHHHHHHHcCCCEEEEEEc--------CCCC-ccCh----HHHHHHHHHHHCCC--eeEEEEEEec
Confidence 478899999998 44442 3434 5674 68899999999998 3699998765
No 229
>PRK09389 (R)-citramalate synthase; Provisional
Probab=24.41 E-value=1.2e+02 Score=30.31 Aligned_cols=106 Identities=14% Similarity=-0.049 Sum_probs=68.3
Q ss_pred cHHHHHHHHHcCCCeeeecccccccccCC-CCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCC--CchhhHhh-----
Q 023712 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWD--LPLHLHES----- 150 (278)
Q Consensus 79 y~eDi~l~k~lG~~~~R~si~WsRi~P~~-~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~--~P~wl~~~----- 150 (278)
-++|++.+.+.|++.+++.++-|.+.-.. .+ .--++.++...+.+..+++.|+++.+++-... -|..+.+-
T Consensus 75 ~~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~-~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~ 153 (488)
T PRK09389 75 VKVDIDAALECDVDSVHLVVPTSDLHIEYKLK-KTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGI 153 (488)
T ss_pred CHHHHHHHHhCCcCEEEEEEccCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHH
Confidence 38999999999999999999776664322 13 22345788889999999999999888776422 12322211
Q ss_pred -h----------CCCCChHHHHHHHHHHHHHHHHhCCCcceEEEecCccc
Q 023712 151 -M----------GGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (278)
Q Consensus 151 -~----------ggw~~~~~~~~F~~ya~~v~~~~gd~V~~w~t~NEP~~ 189 (278)
. -|... +..+.++.+.+.++++ ..--...-|-..+
T Consensus 154 ~~Ga~~i~l~DTvG~~~---P~~~~~lv~~l~~~~~-v~l~~H~HND~Gl 199 (488)
T PRK09389 154 EAGADRICFCDTVGILT---PEKTYELFKRLSELVK-GPVSIHCHNDFGL 199 (488)
T ss_pred hCCCCEEEEecCCCCcC---HHHHHHHHHHHHhhcC-CeEEEEecCCccH
Confidence 0 23334 4455555666666654 2223667787775
No 230
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=24.29 E-value=5.1e+02 Score=23.03 Aligned_cols=54 Identities=17% Similarity=0.165 Sum_probs=35.7
Q ss_pred CcHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEE
Q 023712 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYV 136 (278)
Q Consensus 78 ~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~piv 136 (278)
.+++-++.++++|++.+=+++.=....+.. . .++. ...+.+-+.+.++||++..
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~-~-~~~~---~~~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVDESDERLAR-L-DWSR---EQRLALVNALVETGFRVNS 75 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecCccccchhc-c-CCCH---HHHHHHHHHHHHcCCceeE
Confidence 467899999999999998865311111111 1 1233 3467788888899999753
No 231
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=23.85 E-value=1.9e+02 Score=26.18 Aligned_cols=48 Identities=17% Similarity=0.266 Sum_probs=37.4
Q ss_pred HHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEee
Q 023712 83 IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (278)
Q Consensus 83 i~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL 138 (278)
.++++++|++.+=++-|=.|-.= | +=| +...+-+..++++||.|++++
T Consensus 77 ~~mL~d~G~~~viiGHSERR~~f---~-Et~----~~i~~Kv~~a~~~gl~pIvCi 124 (242)
T cd00311 77 AEMLKDAGAKYVIIGHSERRQYF---G-ETD----EDVAKKVKAALEAGLTPILCV 124 (242)
T ss_pred HHHHHHcCCCEEEeCcccccCcC---C-CCc----HHHHHHHHHHHHCCCEEEEEe
Confidence 48999999999988887444321 2 223 567888899999999999999
No 232
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=23.71 E-value=1.3e+02 Score=25.20 Aligned_cols=31 Identities=13% Similarity=0.145 Sum_probs=26.3
Q ss_pred CCChhHHHHHHHHHHHHHhcCCccEEeeccC
Q 023712 111 KINMEGITFYNNIIDALLQKGIQPYVTLYHW 141 (278)
Q Consensus 111 ~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~ 141 (278)
.+|.+..+...++|.++.+.|..++++.|..
T Consensus 157 ~LD~~~~~~~~~~l~~~~~~~~tili~sH~~ 187 (190)
T TIGR01166 157 GLDPAGREQMLAILRRLRAEGMTVVISTHDV 187 (190)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeecc
Confidence 5899988999999999988898888887753
No 233
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=23.56 E-value=6.5e+02 Score=23.99 Aligned_cols=125 Identities=17% Similarity=0.140 Sum_probs=73.5
Q ss_pred CCChhHHHHHHHHHHHHHhcCCccEEeeccCCCch----------hhH-----hh--------------hCCC----C--
Q 023712 111 KINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPL----------HLH-----ES--------------MGGW----L-- 155 (278)
Q Consensus 111 ~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~----------wl~-----~~--------------~ggw----~-- 155 (278)
-+|.+.+.-++++.+.++++|-.+++=|+|-+--. .+. .. ..+- .
T Consensus 72 l~~d~~i~~~~~lad~vH~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~ 151 (362)
T PRK10605 72 LHSPEQIAAWKKITAGVHAEGGHIAVQLWHTGRISHASLQPGGQAPVAPSAINAGTRTSLRDENGQAIRVETSTPRALEL 151 (362)
T ss_pred ccCHHHHHHHHHHHHHHHhCCCEEEEeccCCCCCCCcccCCCCCCeECCCCcCcCcccccccccccccccCCCCCccCCH
Confidence 57888899999999999999999999999943110 000 00 0000 0
Q ss_pred --ChHHHHHHHHHHHHHHHHhCCCcceEEEecCcccccccCcccccc-CCCCCCCCCchHH-HHHHHHHHHHHHHHHHHH
Q 023712 156 --NKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIF-APGRHQHSSTEPY-LVAHHQILAHAAAFSVYQ 231 (278)
Q Consensus 156 --~~~~~~~F~~ya~~v~~~~gd~V~~w~t~NEP~~~~~~gy~~g~~-~P~~~~~~~~~~~-~~~h~~l~AHa~a~~~~r 231 (278)
-.++++.|++=|+.+.+.==|-|. +.+-.||+...| .|..- ..+.-| -.+-|=++--..+++.+|
T Consensus 152 ~eI~~ii~~f~~AA~rA~~AGfDGVE---------Ih~ahGyLl~qFLSp~~N--~RtDeYGGslENR~Rf~~Eiv~aVr 220 (362)
T PRK10605 152 EEIPGIVNDFRQAIANAREAGFDLVE---------LHSAHGYLLHQFLSPSSN--QRTDQYGGSVENRARLVLEVVDAGI 220 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEE---------EcccccchHHHhcCCcCC--CCCCcCCCcHHHHHHHHHHHHHHHH
Confidence 146788888866665542223342 345678887654 45321 011111 124455555667788888
Q ss_pred HHhcCCCCCeEEceecCc
Q 023712 232 RKYKDKQGGNIGLVVDCE 249 (278)
Q Consensus 232 ~~~~~~~~~~iGi~~~~~ 249 (278)
+... ++ .||+-++..
T Consensus 221 ~~vg--~~-~igvRis~~ 235 (362)
T PRK10605 221 AEWG--AD-RIGIRISPL 235 (362)
T ss_pred HHcC--CC-eEEEEECCc
Confidence 7642 23 588888764
No 234
>COG0138 PurH AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) [Nucleotide transport and metabolism]
Probab=23.55 E-value=1.1e+02 Score=30.89 Aligned_cols=52 Identities=33% Similarity=0.459 Sum_probs=43.7
Q ss_pred CCccCCcccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEe
Q 023712 69 GDVAVDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVT 137 (278)
Q Consensus 69 ~~~a~d~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivt 137 (278)
.-.++|-+-.+.+-|+.+++.|++++ |+|- | .++. +++|+.+-++||.-+.|
T Consensus 457 av~ASDAFFPF~D~i~~aA~aGi~aI--------IqPG--G-SirD------~eVI~aAde~giaMvfT 508 (515)
T COG0138 457 AVLASDAFFPFPDGIDAAAKAGIKAI--------IQPG--G-SIRD------QEVIAAADEHGIAMVFT 508 (515)
T ss_pred cEEeecccCCCcchHHHHHHcCCeEE--------ECCC--C-cccc------HHHHHHHHhcCcEEEEc
Confidence 34579999999999999999999998 8996 5 5553 68999999999987665
No 235
>TIGR02630 xylose_isom_A xylose isomerase. Members of this family are the enzyme xylose isomerase (5.3.1.5), which interconverts D-xylose and D-xylulose.
Probab=23.51 E-value=7.4e+02 Score=24.62 Aligned_cols=127 Identities=18% Similarity=0.193 Sum_probs=68.8
Q ss_pred HHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHH----HHHhcCCccE-EeeccCCCchhhHhhhCCCCCh
Q 023712 83 IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIID----ALLQKGIQPY-VTLYHWDLPLHLHESMGGWLNK 157 (278)
Q Consensus 83 i~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~----~l~~~GI~pi-vtL~H~~~P~wl~~~~ggw~~~ 157 (278)
++.|.+||+..|-| -=..|.|++. .+. +-.+-.+++++ .+.+.||++. +|..-|..|.... |+.+||
T Consensus 84 Fef~~kLg~~~~~F--HD~D~~peg~--~~~-E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~---GA~TnP 155 (434)
T TIGR02630 84 FEFFEKLGVPYYCF--HDRDIAPEGA--SLR-ETNANLDEIVDLIKEKQKETGVKLLWGTANLFSHPRYMH---GAATSP 155 (434)
T ss_pred HHHHHHhCCCeecc--CccccCCCCC--CHH-HHHHHHHHHHHHHHHHHHhhCceeeeecCCccCCccccC---CcCCCC
Confidence 56699999988755 3445888762 232 22233444444 4567888865 5677788897743 889887
Q ss_pred HH--HHHHHHHHHH---HHHHhCCCcceEEEecCcccccccCccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 023712 158 EI--VKYFEIYADT---CFASFGDRVKNWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQR 232 (278)
Q Consensus 158 ~~--~~~F~~ya~~---v~~~~gd~V~~w~t~NEP~~~~~~gy~~g~~~P~~~~~~~~~~~~~~h~~l~AHa~a~~~~r~ 232 (278)
+. ...-..-++. +.+++|... .+.|.| .-|.-.+- .+...+..-|+..+=..++..-++
T Consensus 156 d~~Vra~A~~qvk~alD~~~eLGgen----------yV~WgG-REGye~~l-----ntD~~~e~d~~~~~l~~~~dYa~~ 219 (434)
T TIGR02630 156 DADVFAYAAAQVKKALEVTKKLGGEN----------YVFWGG-REGYETLL-----NTDMKRELDHLARFLHMAVDYAKK 219 (434)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCe----------EEECCC-cccccccc-----ccCHHHHHHHHHHHHHHHHHHhhh
Confidence 52 2211122221 456677532 112222 22222221 233455666776666666665555
Q ss_pred H
Q 023712 233 K 233 (278)
Q Consensus 233 ~ 233 (278)
+
T Consensus 220 i 220 (434)
T TIGR02630 220 I 220 (434)
T ss_pred c
Confidence 3
No 236
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=23.49 E-value=1.9e+02 Score=29.64 Aligned_cols=31 Identities=13% Similarity=0.221 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHHhcCCccEEeeccCCCc
Q 023712 114 MEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (278)
Q Consensus 114 ~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P 144 (278)
.+|+.-+.+.|+.+++.|+.++|.+++|+.-
T Consensus 355 ~sGl~NL~RHIenvr~FGvPvVVAINKFd~D 385 (557)
T PRK13505 355 KKGFANLERHIENIRKFGVPVVVAINKFVTD 385 (557)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 4578899999999999999999999999864
No 237
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=23.40 E-value=5.3e+02 Score=22.95 Aligned_cols=55 Identities=15% Similarity=0.163 Sum_probs=38.6
Q ss_pred cCcHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEE
Q 023712 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYV 136 (278)
Q Consensus 77 ~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~piv 136 (278)
..+.|-+++++++|++.+=+++.-....+.. - .++. ....++-+.+.++||++..
T Consensus 16 ~~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~-~-~~~~---~~~~~~~~~l~~~gl~i~~ 70 (279)
T TIGR00542 16 ECWLERLQLAKTCGFDFVEMSVDETDDRLSR-L-DWSR---EQRLALVNAIIETGVRIPS 70 (279)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCccchhhc-c-CCCH---HHHHHHHHHHHHcCCCcee
Confidence 4578999999999999999976543322222 1 2232 4567788889999998753
No 238
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=23.21 E-value=2.4e+02 Score=27.90 Aligned_cols=71 Identities=21% Similarity=0.349 Sum_probs=46.6
Q ss_pred CccCCcc--cCcHHHHHHHHHcCCCeeeecc----ccccc---ccC-------------------------------CCC
Q 023712 70 DVAVDHY--HRYKEDIDLIAKLGFDAYRFSI----SWSRI---FPD-------------------------------GLG 109 (278)
Q Consensus 70 ~~a~d~y--~~y~eDi~l~k~lG~~~~R~si----~WsRi---~P~-------------------------------~~G 109 (278)
|++-.|+ .-.++=|+.|+..++|.+.+=+ +|.-- .|. ..|
T Consensus 13 DvaR~f~~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~~~~~~~~~~~~g 92 (445)
T cd06569 13 DVARNFHSKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQLGSGPDTNNSGSG 92 (445)
T ss_pred eccCCCCCHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccccccccccCcccCcccCC
Confidence 4444554 3355668999999999887665 34210 110 013
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhh
Q 023712 110 TKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHL 147 (278)
Q Consensus 110 ~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl 147 (278)
.+.++ =++++|+.++++||++|.-+ |+|...
T Consensus 93 -~YT~~---di~eiv~yA~~rgI~VIPEI---D~PGH~ 123 (445)
T cd06569 93 -YYSRA---DYIEILKYAKARHIEVIPEI---DMPGHA 123 (445)
T ss_pred -ccCHH---HHHHHHHHHHHcCCEEEEcc---CCchhH
Confidence 45554 46899999999999999877 677653
No 239
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=23.17 E-value=2.3e+02 Score=29.32 Aligned_cols=52 Identities=10% Similarity=0.147 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhCCCCChHHHHHHHHHHHHH
Q 023712 118 TFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTC 170 (278)
Q Consensus 118 ~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v 170 (278)
+....+++.++++|+..=+..+|-.++.-+.++||. +....++.-.+|++.|
T Consensus 141 e~~~~~v~~ak~~~~~iRIGvN~GSL~~~i~~~yg~-tpe~mVeSAle~~~i~ 192 (611)
T PRK02048 141 DRFVPFLNICKENHTAIRIGVNHGSLSDRIMSRYGD-TPEGMVESCMEFLRIC 192 (611)
T ss_pred HHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCC-ChHHHHHHHHHHHHHH
Confidence 466789999999999999999999999999999863 3334566666666554
No 240
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=23.09 E-value=2.3e+02 Score=29.19 Aligned_cols=53 Identities=13% Similarity=0.185 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhCCCCChHHHHHHHHHHHHHH
Q 023712 118 TFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCF 171 (278)
Q Consensus 118 ~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v~ 171 (278)
+....+++.++++|+..=+..+|-.++.-+..+||. +....++.-.+|++.|-
T Consensus 145 e~~~~vV~~ake~~~~IRIGvN~GSL~~~i~~~yG~-tpegmVeSAle~~~i~e 197 (606)
T PRK00694 145 EKFSPLVEKCKRLGKAMRIGVNHGSLSERVMQRYGD-TIEGMVYSALEYIEVCE 197 (606)
T ss_pred HHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 477889999999999999999999999999999863 43446666666666553
No 241
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=22.96 E-value=4.1e+02 Score=25.80 Aligned_cols=86 Identities=15% Similarity=0.175 Sum_probs=54.7
Q ss_pred HHHHHHHHHc-CCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccE-EeeccCCCchhhHhhhCCCCCh
Q 023712 80 KEDIDLIAKL-GFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLHLHESMGGWLNK 157 (278)
Q Consensus 80 ~eDi~l~k~l-G~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pi-vtL~H~~~P~wl~~~~ggw~~~ 157 (278)
-+|++.+.++ ++. .++++- .|.+ . . ..+.++.+.+.++||++. ++...|..|.+ ++|...||
T Consensus 43 ~~d~~~v~~L~~~~-~~v~lH----~~~d-~-~------~d~~~~~~~l~~~GL~v~~i~p~~f~~~~~---~~GSLt~p 106 (378)
T TIGR02635 43 IEDAALVHRLTGIC-PTVALH----IPWD-R-V------EDYEELARYAEELGLKIGAINPNLFQDDDY---KFGSLTHP 106 (378)
T ss_pred HHHHHHHHhhcCCC-Cceeec----cCCc-c-c------cCHHHHHHHHHHcCCceeeeeCCccCCccc---CCCCCCCC
Confidence 5788888887 555 666652 2212 1 2 236777888999999998 78776766654 34777765
Q ss_pred --HHHHHHHHHHHHH---HHHhCCC-cceE
Q 023712 158 --EIVKYFEIYADTC---FASFGDR-VKNW 181 (278)
Q Consensus 158 --~~~~~F~~ya~~v---~~~~gd~-V~~w 181 (278)
++.+.-.+++..| ++.+|.. |..|
T Consensus 107 D~~vR~~AIe~~k~~idiA~eLGa~~I~iW 136 (378)
T TIGR02635 107 DKRIRRKAIDHLLECVDIAKKTGSKDISLW 136 (378)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 4555556666554 5778764 4344
No 242
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=22.84 E-value=1.2e+02 Score=29.11 Aligned_cols=52 Identities=17% Similarity=0.264 Sum_probs=36.0
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeec
Q 023712 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (278)
Q Consensus 80 ~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~ 139 (278)
++-|+.|++.|++.+=.|+- .|+. . ..+-++.+.++++.+++.|+++++++.
T Consensus 17 ~~yi~~a~~~Gf~~iFTSL~----ipe~-~---~~~~~~~~~~l~~~a~~~~~~v~~Dis 68 (357)
T PF05913_consen 17 KAYIEKAAKYGFKRIFTSLH----IPED-D---PEDYLERLKELLKLAKELGMEVIADIS 68 (357)
T ss_dssp HHHHHHHHCTTEEEEEEEE-----------------HHHHHHHHHHHHHHCT-EEEEEE-
T ss_pred HHHHHHHHHCCCCEEECCCC----cCCC-C---HHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 44588999999998877763 5553 1 233578999999999999999999985
No 243
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=22.59 E-value=1.9e+02 Score=30.33 Aligned_cols=57 Identities=5% Similarity=-0.078 Sum_probs=38.6
Q ss_pred HHHHHHHcCCCeeeecccccc-------cccCCCCCCCC-------hh--HHHHHHHHHHHHHhcCCccEEeec
Q 023712 82 DIDLIAKLGFDAYRFSISWSR-------IFPDGLGTKIN-------ME--GITFYNNIIDALLQKGIQPYVTLY 139 (278)
Q Consensus 82 Di~l~k~lG~~~~R~si~WsR-------i~P~~~G~~~n-------~~--~l~~y~~~i~~l~~~GI~pivtL~ 139 (278)
--+.+++||++++-++=.-.. .-|..+| .+| ++ .++=++++++.+.++||++|++|.
T Consensus 79 ~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~-gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 79 LWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDG-NFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred HHHHHHHhCCCEEEeCcceecccccccCCCCCCCC-CCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 358899999999887732111 1133223 232 21 256789999999999999999874
No 244
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=22.37 E-value=1.1e+02 Score=25.68 Aligned_cols=55 Identities=22% Similarity=0.302 Sum_probs=38.5
Q ss_pred ccCCcccCcHHHH-HHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccE
Q 023712 71 VAVDHYHRYKEDI-DLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY 135 (278)
Q Consensus 71 ~a~d~y~~y~eDi-~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pi 135 (278)
.+|......++|| +.++++|+..+++.+.|+--.-. . -+.++| -..|+++||.|=
T Consensus 36 ~gcpa~e~L~~~I~~aL~~~Gv~~V~V~i~~~p~Wt~--d-~it~~g-------r~~l~~~giapp 91 (146)
T TIGR02159 36 SGCPALEVIRQDIRDAVRALGVEVVEVSTSLDPPWTT--D-WITEDA-------REKLREYGIAPP 91 (146)
T ss_pred CCCchHHHHHHHHHHHHHhcCCCeEEEeEeeCCCCCh--H-HCCHHH-------HHHHHhcCccCC
Confidence 3566777788887 44777899999998887654432 3 455444 466889999984
No 245
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=21.71 E-value=1.4e+02 Score=27.42 Aligned_cols=49 Identities=22% Similarity=0.423 Sum_probs=0.0
Q ss_pred cHHHHHHHHHcCCCeeeecc--cccccccCCCCCCCChhHHHHHHHHHHHHHhcCCcc
Q 023712 79 YKEDIDLIAKLGFDAYRFSI--SWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQP 134 (278)
Q Consensus 79 y~eDi~l~k~lG~~~~R~si--~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~p 134 (278)
|+|-+.+.|++|++.+-+|| +=.|+ - .+||.. +---.+++.+.+.|+..
T Consensus 20 W~erl~~AK~~GFDFvEmSvDEsDeRL-----a-RLDWs~-~er~~l~~ai~etgv~i 70 (287)
T COG3623 20 WLERLALAKELGFDFVEMSVDESDERL-----A-RLDWSK-EERLALVNAIQETGVRI 70 (287)
T ss_pred HHHHHHHHHHcCCCeEEEeccchHHHH-----H-hcCCCH-HHHHHHHHHHHHhCCCc
No 246
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.70 E-value=1.4e+02 Score=26.70 Aligned_cols=64 Identities=16% Similarity=0.168 Sum_probs=45.2
Q ss_pred ccCcHHHHHHHHHcCCCeeeecc-ccccc------ccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeecc
Q 023712 76 YHRYKEDIDLIAKLGFDAYRFSI-SWSRI------FPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYH 140 (278)
Q Consensus 76 y~~y~eDi~l~k~lG~~~~R~si-~WsRi------~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H 140 (278)
-+..++-+..+-+.|----.=+| +|||. .+...| .+...+....-.+|+..+++|++-|||..-
T Consensus 76 P~mL~~vF~~Ll~~~~~P~~p~vwEsSRF~vd~~~a~~~~g-~~~~a~~el~~g~ie~a~~~G~~~IvtVt~ 146 (209)
T COG3916 76 PYMLTDVFPALLEGGPPPSSPGVWESSRFAVDKPSARRAAG-GVSPAAYELFAGMIEYALARGITGIVTVTD 146 (209)
T ss_pred cchhhhhhHHHhcCCCCCCCCCeEEEeeeeeccccchhhcC-CccHHHHHHHHHHHHHHHHcCCceEEEEEc
Confidence 45555666666663322222244 78888 555456 677788899999999999999999999964
No 247
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=21.69 E-value=3.9e+02 Score=23.65 Aligned_cols=52 Identities=10% Similarity=0.037 Sum_probs=34.7
Q ss_pred CcHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEE
Q 023712 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYV 136 (278)
Q Consensus 78 ~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~piv 136 (278)
.+++.+++++++|++.+=+........+. .++. ..-+++-+.+.++||++..
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~----~~~~---~~~~~l~~~~~~~gl~v~s 65 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPHAFAP----DLKA---GGIKQIKALAQTYQMPIIG 65 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCcccccc----ccCc---hHHHHHHHHHHHcCCeEEE
Confidence 47899999999999998874432222211 1222 2346677788899998753
No 248
>PRK13516 gamma-glutamyl:cysteine ligase; Provisional
Probab=21.51 E-value=40 Score=32.54 Aligned_cols=84 Identities=17% Similarity=0.208 Sum_probs=54.8
Q ss_pred HHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhCC--------CCChH
Q 023712 87 AKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGG--------WLNKE 158 (278)
Q Consensus 87 k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~gg--------w~~~~ 158 (278)
++.|+.++|..+ |++ .|.. |..+-...++.|++.++.|.+.|+-.-..-.+||+=. ..++|. =.+.+
T Consensus 174 ~dTG~~S~R~~~-~~~-~P~~-G~pp~~~~~~~y~~~~~~l~~~G~i~d~~~~~WdvRp--~~~~~TvEiRv~D~~~~~~ 248 (373)
T PRK13516 174 VDTGFASARLNS-VSA-FPLS-GRAPFVLNWQEFEAYFRKMSYTGVIDSMKDFYWDIRP--KPEFGTVEVRVMDTPLTLE 248 (373)
T ss_pred cCCcchhHHHHH-Hhc-CCCC-CCCCCcCCHHHHHHHHHHHHHcCCcCCCCeeEEEecc--CCCCCCeEEecCCCCCCHH
Confidence 467899999654 444 2332 3122233467899999999999988777776776421 123333 23566
Q ss_pred HHHHHHHHHHHHHHHhC
Q 023712 159 IVKYFEIYADTCFASFG 175 (278)
Q Consensus 159 ~~~~F~~ya~~v~~~~g 175 (278)
..-.++.|++.++..+-
T Consensus 249 ~~~~iaal~~alv~~~~ 265 (373)
T PRK13516 249 RAAAIAAYIQALARWLL 265 (373)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77788888888887774
No 249
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=21.41 E-value=4.2e+02 Score=24.71 Aligned_cols=80 Identities=18% Similarity=0.214 Sum_probs=56.9
Q ss_pred ccCCcccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHhh
Q 023712 71 VAVDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHES 150 (278)
Q Consensus 71 ~a~d~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~ 150 (278)
.+...++.-.+--+.+|+.|.+.+|-+.-=+|--|-..- ...+++|++..+.- .+.|+-++.-+
T Consensus 53 CsvEs~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQ-Glge~gL~~l~~a~---~~~Gl~vvtEv------------ 116 (286)
T COG2876 53 CSVESEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQ-GLGEEGLKLLKRAA---DETGLPVVTEV------------ 116 (286)
T ss_pred cccCCHHHHHHHHHHHHHcchhhccCCcCCCCCCccccc-ccCHHHHHHHHHHH---HHcCCeeEEEe------------
Confidence 345667777888899999999999999988888776532 46777776666543 45675544333
Q ss_pred hCCCCChHHHHHHHHHHHHH
Q 023712 151 MGGWLNKEIVKYFEIYADTC 170 (278)
Q Consensus 151 ~ggw~~~~~~~~F~~ya~~v 170 (278)
.+++.++.+.+|++.+
T Consensus 117 ----m~~~~~e~~~~y~Dil 132 (286)
T COG2876 117 ----MDVRDVEAAAEYADIL 132 (286)
T ss_pred ----cCHHHHHHHHhhhhHH
Confidence 4456677888887653
No 250
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=21.41 E-value=1.2e+02 Score=27.25 Aligned_cols=57 Identities=12% Similarity=0.096 Sum_probs=37.0
Q ss_pred ccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhH----HHHHHHHHHHHHhcCCccEEee
Q 023712 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEG----ITFYNNIIDALLQKGIQPYVTL 138 (278)
Q Consensus 76 y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~----l~~y~~~i~~l~~~GI~pivtL 138 (278)
..++++-|+++++||.+.+++.- .-.+. + .-+.+. ++..+++.+.+.++||.+.+=.
T Consensus 98 ~~~~~~~i~~a~~lG~~~i~~~~---~~~~~--~-~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~ 158 (283)
T PRK13209 98 LEIMRKAIQLAQDLGIRVIQLAG---YDVYY--E-QANNETRRRFIDGLKESVELASRASVTLAFEI 158 (283)
T ss_pred HHHHHHHHHHHHHcCCCEEEECC---ccccc--c-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEee
Confidence 34567778999999999999741 11111 1 112222 4566888888889998766644
No 251
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=21.29 E-value=7.3e+02 Score=23.75 Aligned_cols=126 Identities=12% Similarity=0.032 Sum_probs=73.7
Q ss_pred CCChhHHHHHHHHHHHHHhcCCccEEeeccCCCchh-----hHh-----h----hCCCC---------ChHHHHHHHHHH
Q 023712 111 KINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLH-----LHE-----S----MGGWL---------NKEIVKYFEIYA 167 (278)
Q Consensus 111 ~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~w-----l~~-----~----~ggw~---------~~~~~~~F~~ya 167 (278)
-.+.+.+..++++++.++++|=+.++=|.|-+--.. ... . ..+.. -.++++.|++=|
T Consensus 71 ~~~d~~i~~~~~l~d~vh~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~~~ps~~~~~~~~~p~~mt~~eI~~ii~~f~~AA 150 (361)
T cd04747 71 FHGEDALAGWKKVVDEVHAAGGKIAPQLWHVGAMRKLGTPPFPDVPPLSPSGLVGPGKPVGREMTEADIDDVIAAFARAA 150 (361)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCEEEEeccCCCCCcCcccCccCCCceeCCCCCCcCCCCCCccCCHHHHHHHHHHHHHHH
Confidence 567888999999999999999999999999442100 000 0 00010 135778888866
Q ss_pred HHHHHHhCCCcceEEEecCcccccccCcccccc-CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEcee
Q 023712 168 DTCFASFGDRVKNWITINEPLQTAVNGYCTGIF-APGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVV 246 (278)
Q Consensus 168 ~~v~~~~gd~V~~w~t~NEP~~~~~~gy~~g~~-~P~~~~~~~~~~~~~~h~~l~AHa~a~~~~r~~~~~~~~~~iGi~~ 246 (278)
+.+.+.=-|-|. +-+-.||+...| .|...... .+.--.+-|-++--..+++.+|+.. .++-.||+-+
T Consensus 151 ~~a~~aGfDgVe---------ih~ahGyLl~qFLSp~~N~Rt-DeYGGslenR~Rf~~eii~air~~v--G~d~~v~vRi 218 (361)
T cd04747 151 ADARRLGFDGIE---------LHGAHGYLIDQFFWAGTNRRA-DGYGGSLAARSRFAAEVVKAIRAAV--GPDFPIILRF 218 (361)
T ss_pred HHHHHcCCCEEE---------EecccchHHHHhcCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHc--CCCCeEEEEE
Confidence 666553224342 345678876544 34321000 0111124455555667778888763 2466799888
Q ss_pred cC
Q 023712 247 DC 248 (278)
Q Consensus 247 ~~ 248 (278)
+.
T Consensus 219 s~ 220 (361)
T cd04747 219 SQ 220 (361)
T ss_pred Cc
Confidence 74
No 252
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=21.12 E-value=5.6e+02 Score=22.59 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHhcCCccE
Q 023712 115 EGITFYNNIIDALLQKGIQPY 135 (278)
Q Consensus 115 ~~l~~y~~~i~~l~~~GI~pi 135 (278)
++++++.+.|+.+.+-|...+
T Consensus 81 ~~~~~l~~~i~~A~~lGa~~v 101 (273)
T smart00518 81 KSIERLIDEIKRCEELGIKAL 101 (273)
T ss_pred HHHHHHHHHHHHHHHcCCCEE
Confidence 345566666666666665543
No 253
>cd00927 Cyt_c_Oxidase_VIc Cytochrome c oxidase subunit VIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIc subunit is found only in eukaryotes and its specific function remains unclear. It has been reported that the relative concentrations of some nuclear encoded CcO subunits, including subunit VIc, compared to those of the mitochondrial encoded subunits, are altered significantly during the progression of prostate cancer.
Probab=21.06 E-value=41 Score=24.76 Aligned_cols=19 Identities=32% Similarity=0.721 Sum_probs=15.8
Q ss_pred CCcccCcH--HHHHHHHHcCC
Q 023712 73 VDHYHRYK--EDIDLIAKLGF 91 (278)
Q Consensus 73 ~d~y~~y~--eDi~l~k~lG~ 91 (278)
.|||..|+ +|++.|+++|+
T Consensus 46 adFYknYD~~kdFerM~~~G~ 66 (70)
T cd00927 46 ADFYKTYDAMKDFERMRKAGL 66 (70)
T ss_pred HHHHHccChHHHHHHHHHcCC
Confidence 67887765 78999999996
No 254
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=21.01 E-value=2.1e+02 Score=23.92 Aligned_cols=57 Identities=16% Similarity=0.196 Sum_probs=35.7
Q ss_pred HHHHHHHHHcC-CCeeeeccc-ccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEee
Q 023712 80 KEDIDLIAKLG-FDAYRFSIS-WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (278)
Q Consensus 80 ~eDi~l~k~lG-~~~~R~si~-WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL 138 (278)
.++++.+++.| ++.+.+|+. .+.....-.|..-+.+ +...+.|+.|++.|+.+.+.+
T Consensus 102 ~~~l~~l~~~g~~~~v~isl~~~~~~~~~~~g~~~~~~--~~~~~~i~~l~~~gi~~~i~~ 160 (191)
T TIGR02495 102 PRVLEELLEEGLVDYVAMDVKAPPEKYPELYGLEKNGS--NNILKSLEILLRSGIPFELRT 160 (191)
T ss_pred HHHHHHHHhcCCCcEEEEeccCChHHHHHHHCCCCchH--HHHHHHHHHHHHcCCCEEEEE
Confidence 57788888888 688888885 4332211112011111 356688899999999876654
No 255
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=20.90 E-value=4.1e+02 Score=25.97 Aligned_cols=94 Identities=19% Similarity=0.370 Sum_probs=55.8
Q ss_pred HcCCCeeeecccccccccCCCCCCCChhHHHHHHHHH--HHHHhcCCccEEeeccCCCchhhHhhh---CC---CCChHH
Q 023712 88 KLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNII--DALLQKGIQPYVTLYHWDLPLHLHESM---GG---WLNKEI 159 (278)
Q Consensus 88 ~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i--~~l~~~GI~pivtL~H~~~P~wl~~~~---gg---w~~~~~ 159 (278)
++|+...|+.|.=.+.--. | ..|. +|+++= ...+..|+.++.+- |..|.|+.... || -+.++-
T Consensus 77 ~lg~si~Rv~I~~ndfsl~--g-~~d~----w~kels~Ak~~in~g~ivfASP--WspPa~Mktt~~~ngg~~g~Lk~e~ 147 (433)
T COG5520 77 QLGFSILRVPIDSNDFSLG--G-SADN----WYKELSTAKSAINPGMIVFASP--WSPPASMKTTNNRNGGNAGRLKYEK 147 (433)
T ss_pred ccCceEEEEEecccccccC--C-Ccch----hhhhcccchhhcCCCcEEEecC--CCCchhhhhccCcCCccccccchhH
Confidence 3788888888865554432 4 5553 444432 23567788777776 78999987532 33 344443
Q ss_pred HHHHHHHHHHHHHHhCC---CcceEEEecCcccc
Q 023712 160 VKYFEIYADTCFASFGD---RVKNWITINEPLQT 190 (278)
Q Consensus 160 ~~~F~~ya~~v~~~~gd---~V~~w~t~NEP~~~ 190 (278)
-.++++|-...+..+++ .+.+-.+-|||...
T Consensus 148 Ya~yA~~l~~fv~~m~~nGvnlyalSVQNEPd~~ 181 (433)
T COG5520 148 YADYADYLNDFVLEMKNNGVNLYALSVQNEPDYA 181 (433)
T ss_pred hHHHHHHHHHHHHHHHhCCCceeEEeeccCCccc
Confidence 34444443334444443 46667799999854
No 256
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=20.87 E-value=2e+02 Score=27.75 Aligned_cols=69 Identities=14% Similarity=0.174 Sum_probs=48.5
Q ss_pred HHHHHHHHHcCCCe--------------eeecccccccc--cCCCCCCCC-hhHHHHHHHHHHHHHhcCCccEEeeccCC
Q 023712 80 KEDIDLIAKLGFDA--------------YRFSISWSRIF--PDGLGTKIN-MEGITFYNNIIDALLQKGIQPYVTLYHWD 142 (278)
Q Consensus 80 ~eDi~l~k~lG~~~--------------~R~si~WsRi~--P~~~G~~~n-~~~l~~y~~~i~~l~~~GI~pivtL~H~~ 142 (278)
.+-.+.+++++.+. -|.+..|.-+. |..+| ..| .+||...++++..+.+.|+-..--+..-.
T Consensus 70 leyA~rLk~l~~~~~d~l~ivmR~y~eKPRTs~gwkGl~~DP~ldg-s~~i~~GL~i~R~ll~~~~~~GlPvatE~ld~~ 148 (356)
T PRK12822 70 LEYAKRLAVLQHQYLDQLYIVMRTYFEKPRTRKGWKGLIFDPDLDG-SNDIEKGLRLARQLLLSINTLGLATATEFLDTT 148 (356)
T ss_pred HHHHHHHHHHHHhhcccEEEEEEeccccCCCCCCccccccCCCCCC-CccHHHHHHHHHHHHHHHHHhCCCEEEeecccc
Confidence 34455666666652 36666777775 33346 566 78999999999999999987776666666
Q ss_pred CchhhHh
Q 023712 143 LPLHLHE 149 (278)
Q Consensus 143 ~P~wl~~ 149 (278)
.|+.+.+
T Consensus 149 ~~qy~~D 155 (356)
T PRK12822 149 SFPYIAD 155 (356)
T ss_pred cHHHHHH
Confidence 6776655
No 257
>PTZ00445 p36-lilke protein; Provisional
Probab=20.82 E-value=1.3e+02 Score=27.02 Aligned_cols=65 Identities=17% Similarity=0.318 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhcCCccEEeeccCCCchhhHh-hhCCCCChH---------HHHHHHHHHHHHHHHhCCCcceEEEecCc
Q 023712 118 TFYNNIIDALLQKGIQPYVTLYHWDLPLHLHE-SMGGWLNKE---------IVKYFEIYADTCFASFGDRVKNWITINEP 187 (278)
Q Consensus 118 ~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~-~~ggw~~~~---------~~~~F~~ya~~v~~~~gd~V~~w~t~NEP 187 (278)
+--+.+++.|++.||+.+++=+ | .-|.. .-|||.++. ..+.|......+-+ .|=+| .-+||-..
T Consensus 29 ~~~~~~v~~L~~~GIk~Va~D~--D--nTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~-~~I~v-~VVTfSd~ 102 (219)
T PTZ00445 29 ESADKFVDLLNECGIKVIASDF--D--LTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKN-SNIKI-SVVTFSDK 102 (219)
T ss_pred HHHHHHHHHHHHcCCeEEEecc--h--hhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHH-CCCeE-EEEEccch
Confidence 4567889999999999987532 2 11111 138899887 55667766655443 32222 23455544
Q ss_pred c
Q 023712 188 L 188 (278)
Q Consensus 188 ~ 188 (278)
.
T Consensus 103 ~ 103 (219)
T PTZ00445 103 E 103 (219)
T ss_pred h
Confidence 3
No 258
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=20.59 E-value=81 Score=28.16 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCcceEEEecCccc
Q 023712 165 IYADTCFASFGDRVKNWITINEPLQ 189 (278)
Q Consensus 165 ~ya~~v~~~~gd~V~~w~t~NEP~~ 189 (278)
...+.+... ...+++.++||||+.
T Consensus 54 ~~~~~v~~~-~~~~~~ll~fNEPD~ 77 (239)
T PF11790_consen 54 DWLANVQNA-HPGSKHLLGFNEPDL 77 (239)
T ss_pred HHHHHHHhh-ccCccceeeecCCCC
No 259
>PRK10658 putative alpha-glucosidase; Provisional
Probab=20.52 E-value=5.7e+02 Score=26.71 Aligned_cols=102 Identities=17% Similarity=0.226 Sum_probs=60.6
Q ss_pred HHHHHHcCCC--eeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccC---CCchhhHhh-------
Q 023712 83 IDLIAKLGFD--AYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW---DLPLHLHES------- 150 (278)
Q Consensus 83 i~l~k~lG~~--~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~---~~P~wl~~~------- 150 (278)
++.+++.|+. ++-+++.|.+-.--..= .+|++.+---..+|++|+++|+++++.+.-+ +.|.+-+..
T Consensus 289 ~~~~r~~~iP~d~i~lD~~w~~~~~~~~f-~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~~s~~f~e~~~~gy~vk 367 (665)
T PRK10658 289 IDGMAERDLPLHVFHFDCFWMKEFQWCDF-EWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQKSPLFKEGKEKGYLLK 367 (665)
T ss_pred HHHHHHcCCCceEEEEchhhhcCCceeee-EEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCCCchHHHHHHHCCeEEE
Confidence 4667777764 67777777543211111 3343333334689999999999988876532 122221100
Q ss_pred -----------------hCCCCChHHHHHHHHHHHHHHHHhCCCcc-eEEEecCcc
Q 023712 151 -----------------MGGWLNKEIVKYFEIYADTCFASFGDRVK-NWITINEPL 188 (278)
Q Consensus 151 -----------------~ggw~~~~~~~~F~~ya~~v~~~~gd~V~-~w~t~NEP~ 188 (278)
+-.++||+..+.|.+..+.+.+ .| |+ +|.=+||+.
T Consensus 368 ~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~d-~G--vdgfw~D~gE~~ 420 (665)
T PRK10658 368 RPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLLD-MG--VDCFKTDFGERI 420 (665)
T ss_pred CCCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHHh-cC--CcEEEecCCcee
Confidence 0125789999999888877553 44 44 466678863
No 260
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=20.32 E-value=1.7e+02 Score=28.34 Aligned_cols=51 Identities=14% Similarity=0.103 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhcCCccEEeeccCCCchhhHhhhCCCCChHHHHHHHHHHHH
Q 023712 118 TFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADT 169 (278)
Q Consensus 118 ~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~ 169 (278)
+....+++.++++|+.+=+..+|-.++.-+.++| |-+....++.-.++++.
T Consensus 118 ~~~~~vv~~ake~~ipIRIGvN~GSL~~~~~~ky-~~t~~amvesA~~~~~~ 168 (359)
T PF04551_consen 118 EKVKEVVEAAKERGIPIRIGVNSGSLEKDILEKY-GPTPEAMVESALEHVRI 168 (359)
T ss_dssp HHHHHHHHHHHHHT-EEEEEEEGGGS-HHHHHHH-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEecccccCcHHHHhhc-cchHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999888 33334455555566654
No 261
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=20.14 E-value=1.3e+02 Score=27.61 Aligned_cols=56 Identities=13% Similarity=0.032 Sum_probs=41.0
Q ss_pred HHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEeeccCCCch
Q 023712 84 DLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPL 145 (278)
Q Consensus 84 ~l~k~lG~~~~R~si~WsRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~ 145 (278)
+++.+++=...-+=+.++-++. ...++++-+.++++.+++.|..+|+++=..|+|.
T Consensus 45 ~ii~~l~~~v~~vK~g~~lf~~------~G~~gi~~l~~~~~~~~~~g~~VilD~K~~DIpn 100 (261)
T TIGR02127 45 RIIDATAEYAAVVKPQVAFFER------FGSEGFKALEEVIAHARSLGLPVLADVKRGDIGS 100 (261)
T ss_pred HHHHhcCCcceEEecCHHHHHh------cCHHHHHHHHHHHHHHHHCCCeEEEEeeccChHH
Confidence 5666665433334445554543 3356788999999999999999999999999984
No 262
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=20.04 E-value=3.9e+02 Score=24.92 Aligned_cols=53 Identities=19% Similarity=0.292 Sum_probs=34.9
Q ss_pred cHHHHHHHHHcCCCeeeec----ccc---cccccCCCCCCCChhHHHHHHHHHHHHHhcCCccEEee
Q 023712 79 YKEDIDLIAKLGFDAYRFS----ISW---SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (278)
Q Consensus 79 y~eDi~l~k~lG~~~~R~s----i~W---sRi~P~~~G~~~n~~~l~~y~~~i~~l~~~GI~pivtL 138 (278)
.++.++.||++|++.+-.. ++. .++.|. ..+ .+-+-+.++.+++.||++..++
T Consensus 142 ~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~----~~s---~~~~l~~i~~a~~~Gi~v~~~~ 201 (340)
T TIGR03699 142 LREVLERLKEAGLDSIPGGGAEILSDRVRKIISPK----KIS---SEEWLEVMETAHKLGLPTTATM 201 (340)
T ss_pred HHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCC----CCC---HHHHHHHHHHHHHcCCCcccee
Confidence 3789999999999977421 111 111121 122 3557899999999999876554
No 263
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=20.01 E-value=2e+02 Score=27.66 Aligned_cols=54 Identities=15% Similarity=0.351 Sum_probs=40.8
Q ss_pred eecccccccc--cCCCCCCCC-hhHHHHHHHHHHHHHhcCCccEEeeccCCCchhhHh
Q 023712 95 RFSISWSRIF--PDGLGTKIN-MEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHE 149 (278)
Q Consensus 95 R~si~WsRi~--P~~~G~~~n-~~~l~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~ 149 (278)
|.+..|.-+. |..+| .++ .+||...++++-++.+.|+.+.--+..-..|+.+.+
T Consensus 99 RTs~g~kGl~~DP~ldg-s~~i~~GL~~~R~ll~~~~e~GlpvatE~ld~~~~~y~~d 155 (349)
T PRK09261 99 RTTVGWKGLINDPDLDG-SFDINDGLRIARKLLLDINELGLPAATEFLDPITPQYIAD 155 (349)
T ss_pred CCCCCCcCCCcCcCccc-cccHHHHHHHHHHHHHHHHHhCCCeEEEecccccHHHHHh
Confidence 5666777775 44456 677 789999999998899999887776666666776665
Done!