Your job contains 1 sequence.
>023713
MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG
GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL
GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT
KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED
LDIRLILVFFSLFLVETHIQLIVWAFMRCIYTFRCYGY
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 023713
(278 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2076259 - symbol:AT3G10330 species:3702 "Arabi... 816 2.5e-81 1
TAIR|locus:2062703 - symbol:TFIIB "transcription factor I... 768 3.1e-76 1
ZFIN|ZDB-GENE-030131-3544 - symbol:gtf2b "general transcr... 420 2.3e-39 1
FB|FBgn0004915 - symbol:TfIIB "Transcription factor IIB" ... 419 2.9e-39 1
UNIPROTKB|F1NXP2 - symbol:GTF2B "Uncharacterized protein"... 418 3.7e-39 1
UNIPROTKB|F2Z4J6 - symbol:LOC786656 "Uncharacterized prot... 403 1.5e-37 1
UNIPROTKB|Q2KIN8 - symbol:GTF2B "Transcription initiation... 403 1.5e-37 1
UNIPROTKB|E2RPG1 - symbol:GTF2B "Uncharacterized protein"... 403 1.5e-37 1
UNIPROTKB|Q00403 - symbol:GTF2B "Transcription initiation... 403 1.5e-37 1
UNIPROTKB|F2Z5J6 - symbol:GTF2B "Uncharacterized protein"... 403 1.5e-37 1
MGI|MGI:2385191 - symbol:Gtf2b "general transcription fac... 403 1.5e-37 1
RGD|619735 - symbol:Gtf2b "general transcription factor I... 403 1.5e-37 1
UNIPROTKB|B1APE2 - symbol:GTF2B "Transcription initiation... 377 8.3e-35 1
UNIPROTKB|B1APE1 - symbol:GTF2B "Transcription initiation... 371 3.6e-34 1
WB|WBGene00006648 - symbol:ttb-1 species:6239 "Caenorhabd... 371 3.6e-34 1
TAIR|locus:2093852 - symbol:pBRP2 "plant-specific TFIIB-r... 370 4.6e-34 1
DICTYBASE|DDB_G0290929 - symbol:gtf2b "transcription init... 344 2.6e-31 1
POMBASE|SPAC16E8.16 - symbol:SPAC16E8.16 "transcription f... 328 1.3e-29 1
CGD|CAL0001439 - symbol:SUA71 species:5476 "Candida albic... 301 9.4e-27 1
CGD|CAL0005818 - symbol:SUA72 species:5476 "Candida albic... 283 7.6e-25 1
UNIPROTKB|Q59K82 - symbol:SUA72 "Likely transcription fac... 283 7.6e-25 1
ASPGD|ASPL0000072123 - symbol:AN4928 species:162425 "Emer... 260 2.1e-22 1
SGD|S000006290 - symbol:SUA7 "Transcription factor TFIIB"... 255 7.0e-22 1
TAIR|locus:2082583 - symbol:AT3G57370 species:3702 "Arabi... 184 1.1e-17 2
GENEDB_PFALCIPARUM|PFA0525w - symbol:PFA0525w "transcript... 196 3.8e-17 2
UNIPROTKB|Q8I237 - symbol:PFA_0525w "Transcription initia... 196 3.8e-17 2
TAIR|locus:2139227 - symbol:AT4G10680 species:3702 "Arabi... 198 7.7e-16 1
TAIR|locus:2157270 - symbol:AT5G39230 species:3702 "Arabi... 118 5.4e-07 1
TAIR|locus:2115255 - symbol:PBRP "plant-specific TFIIB-re... 131 1.4e-06 2
WB|WBGene00000271 - symbol:brf-1 species:6239 "Caenorhabd... 105 6.1e-05 2
>TAIR|locus:2076259 [details] [associations]
symbol:AT3G10330 species:3702 "Arabidopsis thaliana"
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0006413
"translational initiation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=RCA] InterPro:IPR000812
InterPro:IPR013137 InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 GO:GO:0005634 GO:GO:0005737
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0046872
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 EMBL:AC009400 HOGENOM:HOG000108634 KO:K03124
ProtClustDB:CLSN2683788 InterPro:IPR023486 EMBL:AY050421
EMBL:AY060526 EMBL:AY087850 EMBL:Z34661 IPI:IPI00519983
RefSeq:NP_187644.1 UniGene:At.199 ProteinModelPortal:Q9SS44
SMR:Q9SS44 STRING:Q9SS44 PaxDb:Q9SS44 PRIDE:Q9SS44
EnsemblPlants:AT3G10330.1 GeneID:820195 KEGG:ath:AT3G10330
TAIR:At3g10330 InParanoid:Q9SS44 OMA:SNDDQNG PhylomeDB:Q9SS44
Genevestigator:Q9SS44 Uniprot:Q9SS44
Length = 312
Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
Identities = 159/244 (65%), Positives = 182/244 (74%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVX 60
M+D++C+DCKR TEVVFDHSAGDT+CSECGLVLE++S+DETSEWR FANES D+DPVRV
Sbjct: 1 MSDAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 XXXXXXXXXXXXXTVIAKPTAXXXXXXXXXXXXXXQARSSHPDRNLIQAFKSISAMSDRL 120
TVI+KP Q R S+PDR LI AFK+I+ M+DRL
Sbjct: 61 GPTNPLLADGGLTTVISKPNGSSGDFLSSSLGRW-QNRGSNPDRGLIVAFKTIATMADRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYK+VEDQK RGRNQ+A++AACLYIACRQE+KPRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNXXXXXXXXXXXXSED 240
KKEIGRAKE+IVK L E GQ VEMGTIHA D++RRFCSNLGMTN SE+
Sbjct: 180 KKEIGRAKEYIVKQLGLETGQLVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQESVQKSEE 239
Query: 241 LDIR 244
DIR
Sbjct: 240 FDIR 243
>TAIR|locus:2062703 [details] [associations]
symbol:TFIIB "transcription factor IIB" species:3702
"Arabidopsis thaliana" [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0006413 "translational initiation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=RCA] InterPro:IPR000812
InterPro:IPR013137 InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0006352 EMBL:AC002510 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 EMBL:U31096 EMBL:AY093060 EMBL:AY128769
EMBL:AY086647 IPI:IPI00524047 PIR:T00819 RefSeq:NP_181694.1
UniGene:At.10174 ProteinModelPortal:P48512 SMR:P48512 IntAct:P48512
STRING:P48512 PaxDb:P48512 PRIDE:P48512 EnsemblPlants:AT2G41630.1
GeneID:818761 KEGG:ath:AT2G41630 TAIR:At2g41630
HOGENOM:HOG000108634 InParanoid:P48512 KO:K03124 OMA:WRAFDPD
PhylomeDB:P48512 ProtClustDB:CLSN2683788 Genevestigator:P48512
InterPro:IPR023486 Uniprot:P48512
Length = 312
Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
Identities = 148/244 (60%), Positives = 178/244 (72%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVX 60
M+D+YC DCK+ TE+V DHSAGDT+CSECGLVLE++S+DETSEWR FANESS+ DP RV
Sbjct: 1 MSDAYCTDCKKETELVVDHSAGDTLCSECGLVLESHSIDETSEWRTFANESSNSDPNRVG 60
Query: 61 XXXXXXXXXXXXXTVIAKPTAXXXXXXXXXXXXXXQARSSHPDRNLIQAFKSISAMSDRL 120
TVIAKP Q R+S+ DR LIQAFK+I+ MS+RL
Sbjct: 61 GPTNPLLADSALTTVIAKPNGSSGDFLSSSLGRW-QNRNSNSDRGLIQAFKTIATMSERL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANE+YK++EDQK RGRNQ+A+ AACLYIACRQE+KPRT+KE C +ANG T
Sbjct: 120 GLVATIKDRANELYKRLEDQKSSRGRNQDALYAACLYIACRQEDKPRTIKEICVIANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNXXXXXXXXXXXXSED 240
KKEIGRAK++IVK L E GQSV++GTIHA D++RRFCSNL M+N SE+
Sbjct: 180 KKEIGRAKDYIVKTLGLEPGQSVDLGTIHAGDFMRRFCSNLAMSNHAVKAAQEAVQKSEE 239
Query: 241 LDIR 244
DIR
Sbjct: 240 FDIR 243
>ZFIN|ZDB-GENE-030131-3544 [details] [associations]
symbol:gtf2b "general transcription factor IIB"
species:7955 "Danio rerio" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0017025 "TBP-class protein
binding" evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 ZFIN:ZDB-GENE-030131-3544 GO:GO:0006355
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 PROSITE:PS00782
KO:K03124 InterPro:IPR023486 CTD:2959 HOVERGEN:HBG017914
HSSP:Q00403 EMBL:BC055569 IPI:IPI00501186 RefSeq:NP_955991.1
UniGene:Dr.78599 ProteinModelPortal:Q7SX98 SMR:Q7SX98 STRING:Q7SX98
GeneID:324823 KEGG:dre:324823 NextBio:20808979 ArrayExpress:Q7SX98
Uniprot:Q7SX98
Length = 316
Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
Identities = 92/229 (40%), Positives = 127/229 (55%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVXXXXXXXXXXXXXXT 74
+V D+ AGD IC ECGLV+ +D SEWR F+NE + DP RV T
Sbjct: 23 LVEDYRAGDMICPECGLVVRDRVIDVGSEWRTFSNEKATKDPSRVGDAQNPLLNGGDLTT 82
Query: 75 VIAKPTAXXXXXXXXXXXXXXQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I+K T + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MISKGTGAASFDEFGNSKYQNRRTMSSSDRAMLNAFKEITTMADRINLPRNIIDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNXXXXXXXXXXXXSEDLDI 243
LE SV++ I D++ RFCSNLG+ + +LD+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNLGLPKQVQMAATYIARKAVELDL 244
>FB|FBgn0004915 [details] [associations]
symbol:TfIIB "Transcription factor IIB" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=NAS;IDA]
[GO:0001174 "transcriptional start site selection at RNA polymerase
II promoter" evidence=IDA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=NAS;IDA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0051101
"regulation of DNA binding" evidence=IDA] [GO:0005667
"transcription factor complex" evidence=ISS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA]
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS51134
EMBL:AE014134 GO:GO:0046872 GO:GO:0008270 GO:GO:0006357
GO:GO:0005667 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 GO:GO:0051101 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 GO:GO:0001174 KO:K03124 InterPro:IPR023486
GeneTree:ENSGT00390000006671 EMBL:M88164 EMBL:M91081 EMBL:U02879
EMBL:U35148 EMBL:BT011459 EMBL:BT015269 PIR:A42695
RefSeq:NP_476888.1 UniGene:Dm.4476 ProteinModelPortal:P29052
SMR:P29052 DIP:DIP-17603N IntAct:P29052 MINT:MINT-900118
STRING:P29052 PaxDb:P29052 PRIDE:P29052 EnsemblMetazoa:FBtr0080025
EnsemblMetazoa:FBtr0333489 GeneID:34430 KEGG:dme:Dmel_CG5193
CTD:34430 FlyBase:FBgn0004915 InParanoid:P29052 OMA:CNDETER
OrthoDB:EOG4N02WP PhylomeDB:P29052 GenomeRNAi:34430 NextBio:788458
Bgee:P29052 GermOnline:CG5193 Uniprot:P29052
Length = 315
Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
Identities = 94/229 (41%), Positives = 128/229 (55%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVXXXXXXXXXXXXXXT 74
++ D+ AGD ICSECGLV+ +D SEWR F+NE S DP RV T
Sbjct: 22 LIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLST 81
Query: 75 VIAKPTAXXXXXXXXXXXXXXQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I T + S DR+LI AFK IS+M+DR+ L TI DRAN ++
Sbjct: 82 IIGPGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINLPKTIVDRANNLF 141
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V D K L+GR+ +A +ACLYIACRQE PRT KE C+V+ +KKEIGR + +K
Sbjct: 142 KQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLTLKA 200
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNXXXXXXXXXXXXSEDLDI 243
LE SV++ I +D++ RFC+NL + N + ++DI
Sbjct: 201 LET----SVDL--ITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDI 243
>UNIPROTKB|F1NXP2 [details] [associations]
symbol:GTF2B "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 PROSITE:PS00782
InterPro:IPR023486 GeneTree:ENSGT00390000006671 OMA:VLRWRKW
EMBL:AADN02012841 IPI:IPI00571339 Ensembl:ENSGALT00000010015
Uniprot:F1NXP2
Length = 306
Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
Identities = 92/229 (40%), Positives = 127/229 (55%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVXXXXXXXXXXXXXXT 74
+V D+ AGD ICSECGLV+ +D SEWR F+N+ + DP RV T
Sbjct: 13 LVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPLLSDGDLST 72
Query: 75 VIAKPTAXXXXXXXXXXXXXXQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 73 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITNMADRINLPRNIVDRTNNLF 132
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 133 KQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 191
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNXXXXXXXXXXXXSEDLDI 243
LE SV++ I D++ RFCSNLG+ + +LD+
Sbjct: 192 LET----SVDL--ITTGDFMSRFCSNLGLPKQVQMAATHIARKAVELDL 234
>UNIPROTKB|F2Z4J6 [details] [associations]
symbol:LOC786656 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 PROSITE:PS00782
OMA:WRAFDPD InterPro:IPR023486 IPI:IPI00697087 UniGene:Bt.39806
GeneTree:ENSGT00390000006671 EMBL:DAAA02007976
ProteinModelPortal:F2Z4J6 SMR:F2Z4J6 PRIDE:F2Z4J6
Ensembl:ENSBTAT00000044137 Uniprot:F2Z4J6
Length = 316
Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 90/229 (39%), Positives = 124/229 (54%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVXXXXXXXXXXXXXXT 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RV T
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAXXXXXXXXXXXXXXQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNXXXXXXXXXXXXSEDLDI 243
LE SV++ I D++ RFCSNL + + +LD+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>UNIPROTKB|Q2KIN8 [details] [associations]
symbol:GTF2B "Transcription initiation factor IIB"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006352
"DNA-dependent transcription, initiation" evidence=IEA]
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS51134
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782
HOGENOM:HOG000108634 KO:K03124 InterPro:IPR023486 EMBL:BC112570
IPI:IPI00697087 RefSeq:NP_001039607.1 UniGene:Bt.39806
ProteinModelPortal:Q2KIN8 SMR:Q2KIN8 STRING:Q2KIN8 PRIDE:Q2KIN8
GeneID:513231 KEGG:bta:513231 CTD:2959 HOVERGEN:HBG017914
InParanoid:Q2KIN8 OrthoDB:EOG4QRH4F NextBio:20870763 Uniprot:Q2KIN8
Length = 316
Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 90/229 (39%), Positives = 124/229 (54%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVXXXXXXXXXXXXXXT 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RV T
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAXXXXXXXXXXXXXXQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNXXXXXXXXXXXXSEDLDI 243
LE SV++ I D++ RFCSNL + + +LD+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>UNIPROTKB|E2RPG1 [details] [associations]
symbol:GTF2B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 PROSITE:PS00782
KO:K03124 OMA:WRAFDPD InterPro:IPR023486 CTD:2959
GeneTree:ENSGT00390000006671 EMBL:AAEX03004837 RefSeq:XP_537085.1
ProteinModelPortal:E2RPG1 SMR:E2RPG1 PRIDE:E2RPG1
Ensembl:ENSCAFT00000032192 GeneID:479960 KEGG:cfa:479960
NextBio:20855065 Uniprot:E2RPG1
Length = 316
Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 90/229 (39%), Positives = 124/229 (54%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVXXXXXXXXXXXXXXT 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RV T
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAXXXXXXXXXXXXXXQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNXXXXXXXXXXXXSEDLDI 243
LE SV++ I D++ RFCSNL + + +LD+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>UNIPROTKB|Q00403 [details] [associations]
symbol:GTF2B "Transcription initiation factor IIB"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0046966 "thyroid hormone receptor
binding" evidence=IPI] [GO:0008134 "transcription factor binding"
evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=TAS] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000812
InterPro:IPR013137 InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 Reactome:REACT_116125 GO:GO:0019048
GO:GO:0005654 GO:GO:0016032 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006368 GO:GO:0006367
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
Reactome:REACT_1788 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 EMBL:AL445991 PDB:1VOL PDBsum:1VOL PDB:1C9B
PDBsum:1C9B HOGENOM:HOG000108634 KO:K03124 OMA:WRAFDPD
InterPro:IPR023486 CTD:2959 HOVERGEN:HBG017914 OrthoDB:EOG4QRH4F
EMBL:X59268 EMBL:M76766 EMBL:AK289822 EMBL:AB451296 EMBL:BC020597
EMBL:S44184 IPI:IPI00022820 PIR:S17654 RefSeq:NP_001505.1
UniGene:Hs.481852 PDB:1DL6 PDB:1RLY PDB:1RO4 PDB:1TFB PDB:2PHG
PDBsum:1DL6 PDBsum:1RLY PDBsum:1RO4 PDBsum:1TFB PDBsum:2PHG
ProteinModelPortal:Q00403 SMR:Q00403 DIP:DIP-1077N IntAct:Q00403
MINT:MINT-156550 STRING:Q00403 PhosphoSite:Q00403 DMDM:135629
PaxDb:Q00403 PeptideAtlas:Q00403 PRIDE:Q00403 DNASU:2959
Ensembl:ENST00000370500 GeneID:2959 KEGG:hsa:2959 UCSC:uc001dmo.4
GeneCards:GC01M089318 HGNC:HGNC:4648 MIM:189963 neXtProt:NX_Q00403
PharmGKB:PA29035 InParanoid:Q00403 PhylomeDB:Q00403 ChiTaRS:GTF2B
EvolutionaryTrace:Q00403 GenomeRNAi:2959 NextBio:11730
PMAP-CutDB:Q00403 ArrayExpress:Q00403 Bgee:Q00403 CleanEx:HS_GTF2B
Genevestigator:Q00403 GermOnline:ENSG00000137947 Uniprot:Q00403
Length = 316
Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 90/229 (39%), Positives = 124/229 (54%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVXXXXXXXXXXXXXXT 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RV T
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAXXXXXXXXXXXXXXQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNXXXXXXXXXXXXSEDLDI 243
LE SV++ I D++ RFCSNL + + +LD+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>UNIPROTKB|F2Z5J6 [details] [associations]
symbol:GTF2B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 PROSITE:PS00782
InterPro:IPR023486 GeneTree:ENSGT00390000006671 OMA:VLRWRKW
EMBL:CU179630 EMBL:CU151869 Ensembl:ENSSSCT00000007587
Uniprot:F2Z5J6
Length = 316
Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 90/229 (39%), Positives = 124/229 (54%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVXXXXXXXXXXXXXXT 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RV T
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAXXXXXXXXXXXXXXQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNXXXXXXXXXXXXSEDLDI 243
LE SV++ I D++ RFCSNL + + +LD+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>MGI|MGI:2385191 [details] [associations]
symbol:Gtf2b "general transcription factor IIB"
species:10090 "Mus musculus" [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0046966 "thyroid hormone
receptor binding" evidence=ISO] InterPro:IPR000812
InterPro:IPR013137 InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 MGI:MGI:2385191 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0008270 GO:GO:0006352
GO:GO:0001047 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782
HOGENOM:HOG000108634 KO:K03124 OMA:WRAFDPD InterPro:IPR023486
CTD:2959 HOVERGEN:HBG017914 OrthoDB:EOG4QRH4F EMBL:BC016637
IPI:IPI00153874 RefSeq:NP_663521.1 UniGene:Mm.271756
ProteinModelPortal:P62915 SMR:P62915 STRING:P62915
PhosphoSite:P62915 PaxDb:P62915 PRIDE:P62915
Ensembl:ENSMUST00000029938 GeneID:229906 KEGG:mmu:229906
InParanoid:P62915 NextBio:379735 Bgee:P62915 CleanEx:MM_GTF2B
Genevestigator:P62915 GermOnline:ENSMUSG00000028271 Uniprot:P62915
Length = 316
Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 90/229 (39%), Positives = 124/229 (54%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVXXXXXXXXXXXXXXT 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RV T
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAXXXXXXXXXXXXXXQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNXXXXXXXXXXXXSEDLDI 243
LE SV++ I D++ RFCSNL + + +LD+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>RGD|619735 [details] [associations]
symbol:Gtf2b "general transcription factor IIB" species:10116
"Rattus norvegicus" [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA;ISO] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 RGD:619735 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006352
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782
HOGENOM:HOG000108634 KO:K03124 OMA:WRAFDPD InterPro:IPR023486
CTD:2959 HOVERGEN:HBG017914 OrthoDB:EOG4QRH4F
GeneTree:ENSGT00390000006671 EMBL:X65948 EMBL:BC085345
IPI:IPI00200556 PIR:S26299 RefSeq:NP_112303.1 UniGene:Rn.6109
ProteinModelPortal:P62916 SMR:P62916 IntAct:P62916 STRING:P62916
PRIDE:P62916 Ensembl:ENSRNOT00000015032 GeneID:81673 KEGG:rno:81673
InParanoid:P62916 NextBio:615268 Genevestigator:P62916
Uniprot:P62916
Length = 316
Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 90/229 (39%), Positives = 124/229 (54%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVXXXXXXXXXXXXXXT 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RV T
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAXXXXXXXXXXXXXXQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNXXXXXXXXXXXXSEDLDI 243
LE SV++ I D++ RFCSNL + + +LD+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>UNIPROTKB|B1APE2 [details] [associations]
symbol:GTF2B "Transcription initiation factor IIB"
species:9606 "Homo sapiens" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0006355 GO:GO:0008270 GO:GO:0006352
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
PANTHER:PTHR11618 PROSITE:PS00782 EMBL:AL445991
HOGENOM:HOG000108634 InterPro:IPR023486 HOVERGEN:HBG017914
UniGene:Hs.481852 HGNC:HGNC:4648 ChiTaRS:GTF2B IPI:IPI00643006
SMR:B1APE2 STRING:B1APE2 Ensembl:ENST00000418217 Uniprot:B1APE2
Length = 231
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 86/207 (41%), Positives = 115/207 (55%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVXXXXXXXXXXXXXXT 74
+V D+ AGD IC EC V +D SEWR F+N+ + DP RV T
Sbjct: 23 LVEDYRAGDMICPECDRV-----IDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 77
Query: 75 VIAKPTAXXXXXXXXXXXXXXQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 78 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 137
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 138 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 196
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNL 221
LE SV++ I D++ RFCSNL
Sbjct: 197 LET----SVDL--ITTGDFMSRFCSNL 217
>UNIPROTKB|B1APE1 [details] [associations]
symbol:GTF2B "Transcription initiation factor IIB"
species:9606 "Homo sapiens" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0006355 GO:GO:0008270 GO:GO:0006352
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
PANTHER:PTHR11618 PROSITE:PS00782 EMBL:AL445991
HOGENOM:HOG000108634 InterPro:IPR023486 HOVERGEN:HBG017914
UniGene:Hs.481852 HGNC:HGNC:4648 ChiTaRS:GTF2B IPI:IPI00643469
SMR:B1APE1 STRING:B1APE1 Ensembl:ENST00000448623 Uniprot:B1APE1
Length = 224
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 83/202 (41%), Positives = 113/202 (55%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVXXXXXXXXXXXXXXT 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RV T
Sbjct: 22 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 81
Query: 75 VIAKPTAXXXXXXXXXXXXXXQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 82 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 141
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 142 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 200
Query: 195 LEAEMGQSVEMGTIHASDYLRR 216
LE SV++ I D++ R
Sbjct: 201 LET----SVDL--ITTGDFMSR 216
>WB|WBGene00006648 [details] [associations]
symbol:ttb-1 species:6239 "Caenorhabditis elegans"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS51134
GO:GO:0005634 GO:GO:0009792 GO:GO:0006355 GO:GO:0046872
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 HOGENOM:HOG000108634 KO:K03124 OMA:WRAFDPD
InterPro:IPR023486 EMBL:FO081767 RefSeq:NP_503146.1
ProteinModelPortal:O16991 SMR:O16991 STRING:O16991 PaxDb:O16991
EnsemblMetazoa:W03F9.5.1 EnsemblMetazoa:W03F9.5.2
EnsemblMetazoa:W03F9.5.3 GeneID:178544 KEGG:cel:CELE_W03F9.5
UCSC:W03F9.5.1 CTD:178544 WormBase:W03F9.5
GeneTree:ENSGT00390000006671 InParanoid:O16991 NextBio:901568
Uniprot:O16991
Length = 306
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 86/230 (37%), Positives = 120/230 (52%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVXXXXXXXXXXXXXXT 74
++ DH AGD +C CGLV+ VD +EWR F+NE S +DP RV T
Sbjct: 15 LIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPLLSGGDLST 74
Query: 75 VIAKPTAXXXXXXXXXXXXXXQARS-SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEI 133
IA Q +S ++ DR + A I MS+R+ L I+D A+ I
Sbjct: 75 TIA---VGFGGSDSDNSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNIQDSASRI 131
Query: 134 YKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
+K V + K LRG+N EA AACLYIACR++ PRT KE C+V+ +KKEIGR + IV+
Sbjct: 132 FKDVLESKALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSR-VSKKEIGRCFKIIVR 190
Query: 194 HLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNXXXXXXXXXXXXSEDLDI 243
LE + Q I ++D++ RFC NL + N + D+D+
Sbjct: 191 SLETNLEQ------ITSADFMSRFCGNLSLPNSIQAAATRIAKCAVDMDL 234
>TAIR|locus:2093852 [details] [associations]
symbol:pBRP2 "plant-specific TFIIB-related protein 2"
species:3702 "Arabidopsis thaliana" [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0046686 "response to cadmium ion" evidence=IEP]
[GO:0000769 "syncytium formation by mitosis without cytokinesis"
evidence=IMP] [GO:0009960 "endosperm development" evidence=IMP]
[GO:0010440 "stomatal lineage progression" evidence=RCA]
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS51134
GO:GO:0005634 GO:GO:0046686 EMBL:CP002686 GO:GO:0006355
GO:GO:0008270 GO:GO:0006352 GO:GO:0009960 GO:GO:0003743
EMBL:AP001309 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 PANTHER:PTHR11618 KO:K03124 HSSP:Q00403
IPI:IPI00533744 RefSeq:NP_189584.1 UniGene:At.36925
ProteinModelPortal:Q9LIA6 SMR:Q9LIA6 STRING:Q9LIA6
EnsemblPlants:AT3G29380.1 GeneID:822598 KEGG:ath:AT3G29380
TAIR:At3g29380 InParanoid:Q9LIA6 OMA:NSRACEI PhylomeDB:Q9LIA6
ProtClustDB:CLSN2913417 ArrayExpress:Q9LIA6 Genevestigator:Q9LIA6
GO:GO:0000769 Uniprot:Q9LIA6
Length = 336
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 93/255 (36%), Positives = 129/255 (50%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES--SDHDPVR 58
M + C DCKR T +V DHS+GDTICSECGLVLEA+ ++ + EWR FA++ SD DP R
Sbjct: 1 MEEETCLDCKRPTIMVVDHSSGDTICSECGLVLEAHIIEYSQEWRTFASDDNHSDRDPNR 60
Query: 59 VXXXXXXXXXXXXXXTVIAKPTAXXXXXXXXXXXXXX-QARS---SHPDRNLIQAFKSIS 114
V T+I KP +A + +H + + QAF+ I
Sbjct: 61 VGAATNPFLKSGDLVTIIEKPKETASSVLSKDDISTLFRAHNQVKNHEEDLIKQAFEEIQ 120
Query: 115 AMSDRLGLVTTIKDRANEIYKKVE---DQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
M+D L L I RA EI K + + K RG+ AI AA + ACR+ RT+KE
Sbjct: 121 RMTDALDLDIVINSRACEIVSKYDGHANTKLRRGKKLNAICAASVSTACRELQLSRTLKE 180
Query: 172 FCSVANGTTKKEIGRAKEFIVKH-LEA-EMGQSVEMGTIHASDYLRRFCSNLGMTNXXXX 229
VANG KK+I R + ++K LE+ + S I+ + +RRFCS L ++
Sbjct: 181 IAEVANGVDKKDI-RKESLVIKRVLESHQTSVSASQAIINTGELVRRFCSKLDISQREIM 239
Query: 230 XXXXXXXXSEDLDIR 244
+E+ DIR
Sbjct: 240 AIPEAVEKAENFDIR 254
>DICTYBASE|DDB_G0290929 [details] [associations]
symbol:gtf2b "transcription initiation factor IIB"
species:44689 "Dictyostelium discoideum" [GO:0017025 "TBP-class
protein binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0051123 "RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=ISS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0001139 "core RNA polymerase II recruiting
transcription factor activity" evidence=ISS] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS51134
dictyBase:DDB_G0290929 GO:GO:0005654 GO:GO:0006355 GO:GO:0046872
GO:GO:0008270 GenomeReviews:CM000154_GR Gene3D:1.10.472.10
InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405
PANTHER:PTHR11618 PROSITE:PS00782 EMBL:AAFI02000172 GO:GO:0001139
KO:K03124 InterPro:IPR023486 RefSeq:XP_635486.1 HSSP:Q00403
ProteinModelPortal:Q54FD6 SMR:Q54FD6 STRING:Q54FD6
EnsemblProtists:DDB0216283 GeneID:8627902 KEGG:ddi:DDB_G0290929
OMA:VTIRNAY Uniprot:Q54FD6
Length = 325
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 81/223 (36%), Positives = 123/223 (55%)
Query: 5 YCADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFAN-ESSDHDPVRVXXX 62
+C C+ + +++ D++ GD IC CG+V+ VDE SEWR F+N ES+ DP RV
Sbjct: 22 WCMVCRIQDPDIIEDYAKGDLICRGCGVVVGDRIVDEHSEWRTFSNSESTGADPNRVGGP 81
Query: 63 XXXXXXXXXXXTVIAKPTAXXXXXXXXXXXXXXQARSSHPDRNLIQAFKSISAMSDRLGL 122
T + K + ++ DRNL+ AFK I M+D + L
Sbjct: 82 INPLLRDSALSTTVGKGSKDSGTLTRLQN----KSALGTGDRNLLAAFKEIGRMADHMNL 137
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
T++DRANE+++ ++D+K +GR+ + +VAA LYIACRQE+ RT KE ++ N KK
Sbjct: 138 PQTVQDRANELFRFMDDKKSTKGRSVDGMVAAALYIACRQEHLSRTFKEIAALTN-VPKK 196
Query: 183 EIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTN 225
EI R + I+K A + + + TI + D+ RFCS L + N
Sbjct: 197 EISRCYK-IMKETFASV---LNLQTISSEDFTSRFCSTLKLPN 235
>POMBASE|SPAC16E8.16 [details] [associations]
symbol:SPAC16E8.16 "transcription factor TFIIB"
species:4896 "Schizosaccharomyces pombe" [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=IDA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 PomBase:SPAC16E8.16 GO:GO:0005634 EMBL:CU329670
GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0006367 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782
HOGENOM:HOG000108634 KO:K03124 InterPro:IPR023486 PIR:T37796
RefSeq:NP_594229.1 ProteinModelPortal:O13749 SMR:O13749
STRING:O13749 EnsemblFungi:SPAC16E8.16.1 GeneID:2542339
KEGG:spo:SPAC16E8.16 OMA:VLRWRKW OrthoDB:EOG4RZ27R NextBio:20803400
Uniprot:O13749
Length = 340
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 78/229 (34%), Positives = 117/229 (51%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFAN-ESSDHDPVRVXXXX 63
C++C+ +V + S+GDT+C CGLVL +D SEWR F+N + + DP RV
Sbjct: 20 CSECREDPPNLVEEFSSGDTVCGSCGLVLGDRIIDTRSEWRTFSNSDEASGDPSRVGKVA 79
Query: 64 XXXXXXXXXXTVIAKPTAXXXXXXXXXXXXXXQARSSHPDRNLIQAFKSISAMSDRLGLV 123
T I+ Q R ++NL+ A+K I AM D + L
Sbjct: 80 NPLLNGSQLDTTISSYDGAGAMLAKAQGRSV-QVRG---EKNLLTAYKEIGAMCDAISLP 135
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
I D A ++YK+V+D K L+G++ ++I+AAC+YIACRQ PRT E C++ N KKE
Sbjct: 136 KVIADTAKQLYKRVDDHKALKGKSSQSIIAACIYIACRQGKVPRTFMEICTLTN-VPKKE 194
Query: 184 IGRAKEFIVKHL----------EAEMGQS-VEMGTIHASDYLRRFCSNL 221
IGR + + + L +A G ++ + A D + RFC+ L
Sbjct: 195 IGRVYKTLQRMLTEGGALHNSVDALKGHEYIQSSSTSAEDLMVRFCNRL 243
>CGD|CAL0001439 [details] [associations]
symbol:SUA71 species:5476 "Candida albicans" [GO:0001139
"core RNA polymerase II recruiting transcription factor activity"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0001129 "TBP-class protein binding RNA polymerase II
transcription factor activity involved in preinitiation complex
assembly" evidence=IEA] [GO:0000993 "RNA polymerase II core
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:2000679 "positive regulation of transcription regulatory region
DNA binding" evidence=IEA] [GO:0001174 "transcriptional start site
selection at RNA polymerase II promoter" evidence=IEA] [GO:0051123
"RNA polymerase II transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0001113 "transcriptional open complex formation
at RNA polymerase II promoter" evidence=IEA] InterPro:IPR000812
InterPro:IPR013137 InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 CGD:CAL0001439 EMBL:AACQ01000017
EMBL:AACQ01000015 GO:GO:0006355 GO:GO:0008270 GO:GO:0006352
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782 KO:K03124
InterPro:IPR023486 RefSeq:XP_721286.1 RefSeq:XP_721557.1
ProteinModelPortal:Q5AHZ3 STRING:Q5AHZ3 GeneID:3636879
GeneID:3637101 KEGG:cal:CaO19.10577 KEGG:cal:CaO19.3059
Uniprot:Q5AHZ3
Length = 344
Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
Identities = 78/230 (33%), Positives = 113/230 (49%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVXXXX 63
C +CK ++V S GD +C CGLVL VD SEWR F+N+ + DP RV
Sbjct: 23 CPECKIFPPDLVERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 82
Query: 64 XXXXXXXXXXTVIAKPTAXXXXXXXXXXXXXXQARSSHPDRNLIQAFKSISAMSDRLGLV 123
T+I+ ++ D L A+ IS M D L
Sbjct: 83 NPLLDTEDLSTMISY-APDSTKAGRELSRAQSKSLVDKKDNALAAAYIKISQMCDGYQLP 141
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+ D A E+YK V D+KPLRG++QE+I+AA ++I CR+ N R+ KE ++ N +KE
Sbjct: 142 KIVSDGAKEVYKMVYDEKPLRGKSQESIMAASIFIGCRKANVARSFKEIWALTN-VPRKE 200
Query: 184 IGRAKEFIVKHLE---------AEMGQ-SVEMGTIHASDYLRRFCSNLGM 223
IG+ + + K + A GQ S++ A D +RRFCS+LG+
Sbjct: 201 IGKVFKIMDKIIREKNAANPNAAYYGQDSIQTTQTSAEDLIRRFCSHLGV 250
>CGD|CAL0005818 [details] [associations]
symbol:SUA72 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000679
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS50114
PROSITE:PS51134 CGD:CAL0005818 EMBL:AACQ01000315 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.472.10
InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405
PANTHER:PTHR11618 PROSITE:PS00782 HOGENOM:HOG000108634 KO:K03124
InterPro:IPR023486 RefSeq:XP_710164.1 ProteinModelPortal:Q59K82
STRING:Q59K82 GeneID:3648239 KEGG:cal:CaO19.3519 Uniprot:Q59K82
Length = 346
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 72/250 (28%), Positives = 117/250 (46%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVXXXX 63
C DCK+ +++ S GD IC +CGLVL VD SEWR F N+ + DP RV
Sbjct: 22 CPDCKQFPPDLIERFSEGDIICGQCGLVLSDRIVDTRSEWRTFQNDDKNTDDPSRVGDAS 81
Query: 64 XXXXXXXXXXTVIA-KPTAXXXXXXXXXXXXXXQARSSHPDRNLIQAFKSISAMSDRLGL 122
T+I+ P + ++ + L A++ IS + + L
Sbjct: 82 NSLYDTEDLTTMISYAPNSNSGSSKNSLNKIQQKSLVDKKNYALQTAYQKISELCNGYQL 141
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK- 181
+ D A +YK V + + L+G+ Q++I+AA + + CR+ + PRT++E ++ N TK
Sbjct: 142 PKSASDAAKHLYKAVREDRLLKGKTQDSIMAATILLGCRRADVPRTLEEIRALTNVPTKQ 201
Query: 182 --KEIGRAKEFIVKHLEAE------MGQSVEMGTIHASDYLRRFCSNLGMTNXXXXXXXX 233
K G K+ I HL + + ++ + T A D +RRFCS+LG++
Sbjct: 202 IAKVTGLIKKIIRSHLNNDDASTSIVDETSSLTTHSAEDLIRRFCSHLGLSLAITSASEY 261
Query: 234 XXXXSEDLDI 243
DL +
Sbjct: 262 VARKCHDLGV 271
>UNIPROTKB|Q59K82 [details] [associations]
symbol:SUA72 "Likely transcription factor TFIIB"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000679
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS50114
PROSITE:PS51134 CGD:CAL0005818 EMBL:AACQ01000315 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.472.10
InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405
PANTHER:PTHR11618 PROSITE:PS00782 HOGENOM:HOG000108634 KO:K03124
InterPro:IPR023486 RefSeq:XP_710164.1 ProteinModelPortal:Q59K82
STRING:Q59K82 GeneID:3648239 KEGG:cal:CaO19.3519 Uniprot:Q59K82
Length = 346
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 72/250 (28%), Positives = 117/250 (46%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVXXXX 63
C DCK+ +++ S GD IC +CGLVL VD SEWR F N+ + DP RV
Sbjct: 22 CPDCKQFPPDLIERFSEGDIICGQCGLVLSDRIVDTRSEWRTFQNDDKNTDDPSRVGDAS 81
Query: 64 XXXXXXXXXXTVIA-KPTAXXXXXXXXXXXXXXQARSSHPDRNLIQAFKSISAMSDRLGL 122
T+I+ P + ++ + L A++ IS + + L
Sbjct: 82 NSLYDTEDLTTMISYAPNSNSGSSKNSLNKIQQKSLVDKKNYALQTAYQKISELCNGYQL 141
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK- 181
+ D A +YK V + + L+G+ Q++I+AA + + CR+ + PRT++E ++ N TK
Sbjct: 142 PKSASDAAKHLYKAVREDRLLKGKTQDSIMAATILLGCRRADVPRTLEEIRALTNVPTKQ 201
Query: 182 --KEIGRAKEFIVKHLEAE------MGQSVEMGTIHASDYLRRFCSNLGMTNXXXXXXXX 233
K G K+ I HL + + ++ + T A D +RRFCS+LG++
Sbjct: 202 IAKVTGLIKKIIRSHLNNDDASTSIVDETSSLTTHSAEDLIRRFCSHLGLSLAITSASEY 261
Query: 234 XXXXSEDLDI 243
DL +
Sbjct: 262 VARKCHDLGV 271
>ASPGD|ASPL0000072123 [details] [associations]
symbol:AN4928 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0017025 "TBP-class
protein binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0006355 GO:GO:0008270 GO:GO:0006352
EMBL:BN001303 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 EMBL:AACD01000084 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 HOGENOM:HOG000108634 KO:K03124 InterPro:IPR023486
OMA:VLRWRKW OrthoDB:EOG4RZ27R RefSeq:XP_662532.1
ProteinModelPortal:Q5B3F2 STRING:Q5B3F2
EnsemblFungi:CADANIAT00005470 GeneID:2872725 KEGG:ani:AN4928.2
Uniprot:Q5B3F2
Length = 351
Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 58/194 (29%), Positives = 97/194 (50%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVXXXXX 64
C +CK + + + +T+C CGLVL +D SEWR F+N+ ++D P RV
Sbjct: 26 CPECKEMPPNLEFPGSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDATN 85
Query: 65 XXXXXXXXXTVIAKPTAXXXXXXXXXXXXXXQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
T IA + + S +++L+ A+K I A+ D G+
Sbjct: 86 PLLNGDQLETQIA---SGGSGRVRDLYRAQNKQSSDKANKSLLAAYKEIGALCDGFGIPK 142
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACR+ PRT E +V ++KEI
Sbjct: 143 NVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRKCKVPRTFTEIFAVTK-VSRKEI 201
Query: 185 GRAKEFIVKHLEAE 198
GR + + K ++
Sbjct: 202 GRIYKALEKFFTSQ 215
>SGD|S000006290 [details] [associations]
symbol:SUA7 "Transcription factor TFIIB" species:4932
"Saccharomyces cerevisiae" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006352
"DNA-dependent transcription, initiation" evidence=IEA] [GO:0001129
"TBP-class protein binding RNA polymerase II transcription factor
activity involved in preinitiation complex assembly"
evidence=IMP;IDA] [GO:0001139 "core RNA polymerase II recruiting
transcription factor activity" evidence=IMP;IDA] [GO:0017025
"TBP-class protein binding" evidence=IEA;IDA;IPI] [GO:0051123 "RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IMP;IDA] [GO:0000993 "RNA polymerase II core binding"
evidence=IDA;IPI] [GO:2000679 "positive regulation of transcription
regulatory region DNA binding" evidence=IDA] [GO:0001174
"transcriptional start site selection at RNA polymerase II
promoter" evidence=IMP] [GO:0001113 "transcriptional open complex
formation at RNA polymerase II promoter" evidence=IMP]
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS51134
SGD:S000006290 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
EMBL:BK006949 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 EMBL:U51033 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 GO:GO:0017025 GO:GO:0000993 GO:GO:2000679
GO:GO:0001139 GO:GO:0001129 GO:GO:0001113 PDB:3K1F PDB:3K7A
PDB:4BBR PDB:4BBS PDBsum:3K1F PDBsum:3K7A PDBsum:4BBR PDBsum:4BBS
GO:GO:0001174 HOGENOM:HOG000108634 KO:K03124 InterPro:IPR023486
OMA:SNDDQNG GeneTree:ENSGT00390000006671 OrthoDB:EOG4RZ27R
EMBL:M81380 EMBL:AY693232 PIR:S26707 RefSeq:NP_015411.1
ProteinModelPortal:P29055 SMR:P29055 DIP:DIP-701N IntAct:P29055
MINT:MINT-473341 STRING:P29055 PaxDb:P29055 PeptideAtlas:P29055
EnsemblFungi:YPR086W GeneID:856201 KEGG:sce:YPR086W CYGD:YPR086w
EvolutionaryTrace:P29055 NextBio:981402 Genevestigator:P29055
GermOnline:YPR086W Uniprot:P29055
Length = 345
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 71/227 (31%), Positives = 107/227 (47%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVXXXX 63
C +CK ++V S GD +C+ CGLVL VD SEWR F+N+ + DP RV
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEAS 83
Query: 64 XXXXXXXXXXTVIAKPTAXXXXXXXXXXXXXXQARSSHPDRNLIQAFKSISAMSDRLGLV 123
T I K + D + AF I+ + D L
Sbjct: 84 NPLLDGNNLSTRIGKGETTDMRFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAELP 143
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+KD A E YK D+K L+G++ E+I+AA + I CR+ RT KE S+ + TK E
Sbjct: 144 KIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKTK-E 202
Query: 184 IGRAKEFIVKHL---EAEMG-QSVEMGTIHASD---YLRRFCSNLGM 223
G+ I+K++ ++E G ++ + + Y+ RFCS+LG+
Sbjct: 203 FGKTLN-IMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGL 248
>TAIR|locus:2082583 [details] [associations]
symbol:AT3G57370 species:3702 "Arabidopsis thaliana"
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0006413
"translational initiation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0010440 "stomatal lineage progression"
evidence=RCA] InterPro:IPR000812 InterPro:IPR013150 Pfam:PF00382
EMBL:CP002686 GO:GO:0006355 GO:GO:0008270 GO:GO:0006352
EMBL:AL137080 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 PANTHER:PTHR11618 KO:K03124 HSSP:Q00403
EMBL:AY463602 IPI:IPI00522698 PIR:T45815 RefSeq:NP_191296.1
UniGene:At.34838 ProteinModelPortal:Q9M2L0 SMR:Q9M2L0 STRING:Q9M2L0
PRIDE:Q9M2L0 EnsemblPlants:AT3G57370.1 GeneID:824904
KEGG:ath:AT3G57370 TAIR:At3g57370 InParanoid:Q9M2L0
PhylomeDB:Q9M2L0 ArrayExpress:Q9M2L0 Genevestigator:Q9M2L0
Uniprot:Q9M2L0
Length = 360
Score = 184 (69.8 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 45/121 (37%), Positives = 72/121 (59%)
Query: 99 SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYI 158
S+ P++ L + SI A+S+ L L TIK +ANEI+K VE RG+ + + AAC+YI
Sbjct: 152 STKPNKAL--SIVSIEAISNGLKLPATIKGQANEIFKVVESYA--RGKERNVLFAACIYI 207
Query: 159 ACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFC 218
ACR + RT++E AN + +I FI + LE + ++ M +I +++++RFC
Sbjct: 208 ACRDNDMTRTMREISRFANKASISDISETVGFIAEKLE--INKNWYM-SIETANFIKRFC 264
Query: 219 S 219
S
Sbjct: 265 S 265
Score = 55 (24.4 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETS 42
C CK++ VV DH T C CGL + + + S
Sbjct: 9 CRRCKQIN-VVTDHVTRRTRCFGCGLEFKYRPIGDLS 44
>GENEDB_PFALCIPARUM|PFA0525w [details] [associations]
symbol:PFA0525w "transcription initiation factor
TFIIB, putative" species:5833 "Plasmodium falciparum" [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=ISS] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0006355 GO:GO:0008270 GO:GO:0003743
GO:GO:0006367 Gene3D:1.10.472.10 InterPro:IPR013763 SUPFAM:SSF47954
PANTHER:PTHR11618 EMBL:AL844501 KO:K03124 HSSP:Q00403
RefSeq:XP_001351037.1 ProteinModelPortal:Q8I237 PRIDE:Q8I237
EnsemblProtists:PFA0525w:mRNA GeneID:813242 KEGG:pfa:PFA_0525w
HOGENOM:HOG000283789 OMA:YNENISH ProtClustDB:CLSZ2432986
Uniprot:Q8I237
Length = 367
Score = 196 (74.1 bits), Expect = 3.8e-17, Sum P(2) = 3.8e-17
Identities = 50/183 (27%), Positives = 84/183 (45%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANE--SSDHDPVRVXXXX 63
C DCK ++ D S G IC+ CG+V+E+ + E EWR F N+ S + D RV
Sbjct: 50 CPDCKEKGIIICDTSEGTQICNGCGMVVESKILSEEQEWRNFQNDGQSKNTDRNRVGEVS 109
Query: 64 XXXXXXXXXXTVIAKPTAXXXXXXXXXXXXXXQARSSHPDRNLIQAFKSISAMSDRLGLV 123
T K + Q + D+ LI AF + + D L
Sbjct: 110 DIWLENNLTSTTFIKSSKKLQHLNMMT-----QINKN--DQTLISAFNILKLICDTFFLR 162
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+ + +RA EI K+++D + L+ R + A +Y+ACR+ +++KE + +K+
Sbjct: 163 SNVIERAKEITKELQDMEQLKNRINNLNMLAVVYLACREAGHIKSIKELITFDRSYKEKD 222
Query: 184 IGR 186
+G+
Sbjct: 223 LGK 225
Score = 37 (18.1 bits), Expect = 3.8e-17, Sum P(2) = 3.8e-17
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 173 CSVANGTTK---KEIGRAKEFIV-KHLEAEMGQSVEM 205
C V T K KE+ A E+I+ K+ +E + M
Sbjct: 317 CGVTTNTLKTTFKELLNAAEYIIPKYYLSEDNPKLSM 353
>UNIPROTKB|Q8I237 [details] [associations]
symbol:PFA_0525w "Transcription initiation factor TFIIB,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=ISS] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0006355 GO:GO:0008270 GO:GO:0003743
GO:GO:0006367 Gene3D:1.10.472.10 InterPro:IPR013763 SUPFAM:SSF47954
PANTHER:PTHR11618 EMBL:AL844501 KO:K03124 HSSP:Q00403
RefSeq:XP_001351037.1 ProteinModelPortal:Q8I237 PRIDE:Q8I237
EnsemblProtists:PFA0525w:mRNA GeneID:813242 KEGG:pfa:PFA_0525w
HOGENOM:HOG000283789 OMA:YNENISH ProtClustDB:CLSZ2432986
Uniprot:Q8I237
Length = 367
Score = 196 (74.1 bits), Expect = 3.8e-17, Sum P(2) = 3.8e-17
Identities = 50/183 (27%), Positives = 84/183 (45%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANE--SSDHDPVRVXXXX 63
C DCK ++ D S G IC+ CG+V+E+ + E EWR F N+ S + D RV
Sbjct: 50 CPDCKEKGIIICDTSEGTQICNGCGMVVESKILSEEQEWRNFQNDGQSKNTDRNRVGEVS 109
Query: 64 XXXXXXXXXXTVIAKPTAXXXXXXXXXXXXXXQARSSHPDRNLIQAFKSISAMSDRLGLV 123
T K + Q + D+ LI AF + + D L
Sbjct: 110 DIWLENNLTSTTFIKSSKKLQHLNMMT-----QINKN--DQTLISAFNILKLICDTFFLR 162
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+ + +RA EI K+++D + L+ R + A +Y+ACR+ +++KE + +K+
Sbjct: 163 SNVIERAKEITKELQDMEQLKNRINNLNMLAVVYLACREAGHIKSIKELITFDRSYKEKD 222
Query: 184 IGR 186
+G+
Sbjct: 223 LGK 225
Score = 37 (18.1 bits), Expect = 3.8e-17, Sum P(2) = 3.8e-17
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 173 CSVANGTTK---KEIGRAKEFIV-KHLEAEMGQSVEM 205
C V T K KE+ A E+I+ K+ +E + M
Sbjct: 317 CGVTTNTLKTTFKELLNAAEYIIPKYYLSEDNPKLSM 353
>TAIR|locus:2139227 [details] [associations]
symbol:AT4G10680 species:3702 "Arabidopsis thaliana"
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0006413
"translational initiation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0006355 GO:GO:0008270 GO:GO:0006352 GO:GO:0003743
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
eggNOG:COG1405 PANTHER:PTHR11618 EMBL:AL049523 EMBL:AF080119
EMBL:AL161518 KO:K03124 HSSP:P61999 EMBL:AY463604 IPI:IPI00527305
PIR:T01909 RefSeq:NP_192806.1 UniGene:At.33613
ProteinModelPortal:O82494 SMR:O82494 STRING:O82494
EnsemblPlants:AT4G10680.1 GeneID:826661 KEGG:ath:AT4G10680
TAIR:At4g10680 InParanoid:O82494 PhylomeDB:O82494
Genevestigator:O82494 Uniprot:O82494
Length = 182
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 60/191 (31%), Positives = 91/191 (47%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVXXX 62
D C +CKR TE V ++ GDTIC ECG V+E +D+ N S H P
Sbjct: 4 DGICLECKRPTETVVNYKNGDTICIECGHVIENNIIDDLDGASTNPNLKSGHLP------ 57
Query: 63 XXXXXXXXXXXTVIAKPTAXXXXXXXXXXXXXXQARSSHPDRNLIQ-AFKSISAMSDRLG 121
T+I K + + + + ++I+ A+ I M++ LG
Sbjct: 58 -----------TIIFKLSGKSSSLASKLRRTQNEMIKNKQEEDVIKIAYAEIERMTEALG 106
Query: 122 LVTTIKDRANEIYKKVEDQKPLRG-RNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
L I + A +I K+ D+K LRG ++ + AA + ACRQ N P+T+KE +VAN
Sbjct: 107 LTFGISNTACKILSKL-DKKNLRGGKSLRGLCAASVSRACRQVNIPKTLKEISAVAN-VD 164
Query: 181 KKEIGRAKEFI 191
KEI +A + +
Sbjct: 165 MKEINKAVKLL 175
>TAIR|locus:2157270 [details] [associations]
symbol:AT5G39230 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
Pfam:PF08271 PROSITE:PS51134 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006355 GO:GO:0008270 GO:GO:0006352
PANTHER:PTHR11618 EMBL:AB010694 IPI:IPI00525422 RefSeq:NP_198739.1
UniGene:At.55246 ProteinModelPortal:Q3E7U7 SMR:Q3E7U7
EnsemblPlants:AT5G39230.1 GeneID:833919 KEGG:ath:AT5G39230
TAIR:At5g39230 eggNOG:NOG241571 HOGENOM:HOG000131620 OMA:TICTECG
PhylomeDB:Q3E7U7 ProtClustDB:CLSN2916747 Genevestigator:Q3E7U7
Uniprot:Q3E7U7
Length = 119
Score = 118 (46.6 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 20/35 (57%), Positives = 28/35 (80%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEA-YSVD 39
C DCK+ T+ V D+ +GDTIC+ECGL+L++ Y VD
Sbjct: 6 CLDCKKRTDTVIDYRSGDTICTECGLILDSHYIVD 40
>TAIR|locus:2115255 [details] [associations]
symbol:PBRP "plant-specific TFIIB-related protein"
species:3702 "Arabidopsis thaliana" [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009527 "plastid outer membrane" evidence=IDA]
[GO:0000182 "rDNA binding" evidence=IDA] [GO:0010440 "stomatal
lineage progression" evidence=RCA] InterPro:IPR000812
InterPro:IPR013150 Pfam:PF00382 PRINTS:PR00685 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0006355 GO:GO:0008270 GO:GO:0006352
GO:GO:0003743 EMBL:AL161589 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 EMBL:Z99708 PANTHER:PTHR11618
GO:GO:0000182 GO:GO:0009527 KO:K03124 HSSP:Q00403 EMBL:BT006470
EMBL:AY463603 EMBL:AJ295068 IPI:IPI00543098 PIR:G85432
RefSeq:NP_195383.1 UniGene:At.48945 ProteinModelPortal:O23215
SMR:O23215 STRING:O23215 PRIDE:O23215 EnsemblPlants:AT4G36650.1
GeneID:829817 KEGG:ath:AT4G36650 TAIR:At4g36650
HOGENOM:HOG000114088 InParanoid:O23215 OMA:RDCCSAT PhylomeDB:O23215
ProtClustDB:CLSN2685566 Genevestigator:O23215 Uniprot:O23215
Length = 503
Score = 131 (51.2 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 35/115 (30%), Positives = 64/115 (55%)
Query: 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKP 166
++A+ I ++ LGL I + A ++++ LR R+ EA+ ACL A R+ +P
Sbjct: 131 LRAYMQIIDVASILGLDCDISEHAFQLFRDCCSATCLRNRSVEALATACLVQAIREAQEP 190
Query: 167 RTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNL 221
RT++E S+A +KEIG+ + + + L+ + Q + +I S ++ RFC+ L
Sbjct: 191 RTLQEI-SIAANVQQKEIGKYIKILGEALQ--LSQPINSNSI--SVHMPRFCTLL 240
Score = 43 (20.2 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 5 YCADCK-RLTEVVFDHSAGDTICSECGLVLE 34
YC+ + R T S T CS CG V+E
Sbjct: 5 YCSSAQGRCTTTSSGRSI--TECSSCGRVME 33
>WB|WBGene00000271 [details] [associations]
symbol:brf-1 species:6239 "Caenorhabditis elegans"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF07741 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0005634 GO:GO:0006898 GO:GO:0040007
GO:GO:0045893 GO:GO:0002119 GO:GO:0008270 GO:GO:0000003
GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618 EMBL:FO080734
KO:K15196 GeneTree:ENSGT00390000010349 PIR:T16368
RefSeq:NP_495526.1 ProteinModelPortal:Q20429 SMR:Q20429
STRING:Q20429 PaxDb:Q20429 EnsemblMetazoa:F45E12.2.1
EnsemblMetazoa:F45E12.2.2 GeneID:174199 KEGG:cel:CELE_F45E12.2
UCSC:F45E12.2 CTD:174199 WormBase:F45E12.2 InParanoid:Q20429
OMA:CRLENTA NextBio:882969 Uniprot:Q20429
Length = 759
Score = 105 (42.0 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 24/89 (26%), Positives = 42/89 (47%)
Query: 111 KSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVK 170
K I + +L + + + A YK + RGRN+ ++VA C+YI CR EN +
Sbjct: 86 KVIDELGSQLRINSHCMNTAFNFYKMCVSRNLTRGRNRSSVVAVCMYITCRLENTAHLLL 145
Query: 171 EFCSVANGTTKKEIGRAKEFIVKHLEAEM 199
+F V ++GR ++ + L +
Sbjct: 146 DFSDVTQ-INVFDLGRNLNYLSRSLRINL 173
Score = 62 (26.9 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLE 34
C++C +E+ D + GD C+ CG VLE
Sbjct: 5 CSNCGS-SEIDEDAARGDATCTACGTVLE 32
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.134 0.402 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 278 238 0.00091 113 3 11 22 0.37 33
32 0.44 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 30
No. of states in DFA: 612 (65 KB)
Total size of DFA: 197 KB (2111 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 17.44u 0.09s 17.53t Elapsed: 00:00:01
Total cpu time: 17.45u 0.09s 17.54t Elapsed: 00:00:01
Start: Fri May 10 16:39:52 2013 End: Fri May 10 16:39:53 2013