BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023713
(278 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224135681|ref|XP_002322134.1| predicted protein [Populus trichocarpa]
gi|222869130|gb|EEF06261.1| predicted protein [Populus trichocarpa]
Length = 311
Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust.
Identities = 208/244 (85%), Positives = 225/244 (92%), Gaps = 1/244 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M DSYC DCKRLTE+VFDHSAGDTICSECGL+LEA+SVDETSEWR F+NESSDHDP RVG
Sbjct: 1 MEDSYCPDCKRLTEIVFDHSAGDTICSECGLILEAHSVDETSEWRTFSNESSDHDPNRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GPLNPLL+ GGLST I+K T GGS ELLS SLGK Q+R ++PDRN IQAFKSI+AM+DRL
Sbjct: 61 GPLNPLLADGGLSTTISK-TNGGSNELLSCSLGKWQSRGANPDRNRIQAFKSIAAMADRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLVTTIKDRANEIYKKVEDQKPL+GRNQ+AI+AACLYIACRQENK RTVKE CSV NGTT
Sbjct: 120 GLVTTIKDRANEIYKKVEDQKPLKGRNQDAILAACLYIACRQENKARTVKEICSVVNGTT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
KKEIGRAKEFIVKHLE EMG S+EMGTIHA+DYLRRFCSNLGMTNQAVKAA EAVQKSE+
Sbjct: 180 KKEIGRAKEFIVKHLEVEMGHSMEMGTIHAADYLRRFCSNLGMTNQAVKAAHEAVQKSEE 239
Query: 241 LDIR 244
LDIR
Sbjct: 240 LDIR 243
>gi|255544920|ref|XP_002513521.1| transcription initiation factor iib, putative [Ricinus communis]
gi|223547429|gb|EEF48924.1| transcription initiation factor iib, putative [Ricinus communis]
Length = 312
Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust.
Identities = 198/261 (75%), Positives = 229/261 (87%), Gaps = 1/261 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
MAD+YC DCKR TEVVFDHSAGDT+CSECGLVLE++S+DETSEWR FANES+D+DPVRVG
Sbjct: 1 MADTYCPDCKRPTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESADNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVI+KPT G S + L+ SLG+ Q R S+PDR+LIQAFK+I+ MSDRL
Sbjct: 61 GPSNPLLADGGLSTVISKPT-GASGDFLTSSLGRWQNRGSNPDRSLIQAFKTIATMSDRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYKKVEDQKPLRGRNQ+A++AACLYIACRQE+KPRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIYKKVEDQKPLRGRNQDAVLAACLYIACRQEDKPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
KKEIGRAKE+IVK LE E+GQS+EMGTIHA D+LRRFCS+LGM NQAVKAAQEAV+KSE+
Sbjct: 180 KKEIGRAKEYIVKQLEVELGQSMEMGTIHAGDFLRRFCSHLGMNNQAVKAAQEAVKKSEE 239
Query: 241 LDIRLILVFFSLFLVETHIQL 261
LDIR + + ++ QL
Sbjct: 240 LDIRRSPISIAAAIIYMITQL 260
>gi|225436547|ref|XP_002277679.1| PREDICTED: transcription initiation factor IIB [Vitis vinifera]
gi|297734946|emb|CBI17180.3| unnamed protein product [Vitis vinifera]
Length = 314
Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust.
Identities = 194/245 (79%), Positives = 220/245 (89%), Gaps = 1/245 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M D+YC +CKR TEVV DHSAGDT+CSECGLVLEA+S+DE SEWR FANES+D+DPVRVG
Sbjct: 1 MTDTYCPECKRYTEVVLDHSAGDTVCSECGLVLEAHSIDEASEWRTFANESADNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGG-STELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDR 119
GP NPLL+ GGLST+I+KP+ GG S + LS SLG+ Q R S+PDR+LIQAFK+I+ M DR
Sbjct: 61 GPSNPLLADGGLSTLISKPSNGGPSNDFLSSSLGRWQNRGSNPDRSLIQAFKTIATMCDR 120
Query: 120 LGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179
LGLV TIKD ANEIYKKVEDQKPLRGRNQ+AI+AAC+YIACRQE+KPRTVKE CSVANG
Sbjct: 121 LGLVATIKDLANEIYKKVEDQKPLRGRNQDAILAACIYIACRQEDKPRTVKEICSVANGA 180
Query: 180 TKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSE 239
TKKEIGRAKE+IVK LE EMGQS+EMGTIHA D+LRRFCS+LGMTNQAVKAAQEAVQKSE
Sbjct: 181 TKKEIGRAKEYIVKQLEVEMGQSMEMGTIHAGDFLRRFCSHLGMTNQAVKAAQEAVQKSE 240
Query: 240 DLDIR 244
+LDIR
Sbjct: 241 ELDIR 245
>gi|225464249|ref|XP_002269045.1| PREDICTED: transcription initiation factor IIB-2 [Vitis vinifera]
gi|296088031|emb|CBI35314.3| unnamed protein product [Vitis vinifera]
Length = 312
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 197/261 (75%), Positives = 222/261 (85%), Gaps = 1/261 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
MAD++C DCK+ TEVVFDHSAGDT+CSECGLVLE++S+DETSEWR FANES D+DPVRVG
Sbjct: 1 MADAFCTDCKKNTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP G S + LS SLG+ Q R S+PDR LI AFK+I+ MSDRL
Sbjct: 61 GPSNPLLTDGGLSTVIAKPN-GVSGDFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYKKVEDQK RGRNQ+A++AACLYIACRQE+KPRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIYKKVEDQKSTRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
KKEIGRAKE+IVK LEAE GQSVEMGTIHA D++RRFCSNLGMTNQ VKAAQEAVQKSE+
Sbjct: 180 KKEIGRAKEYIVKQLEAEKGQSVEMGTIHAGDFMRRFCSNLGMTNQVVKAAQEAVQKSEE 239
Query: 241 LDIRLILVFFSLFLVETHIQL 261
DIR V + ++ QL
Sbjct: 240 FDIRRSPVSIAAAVIYIITQL 260
>gi|225441886|ref|XP_002284342.1| PREDICTED: transcription initiation factor IIB-2 [Vitis vinifera]
gi|297739630|emb|CBI29812.3| unnamed protein product [Vitis vinifera]
Length = 312
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 197/261 (75%), Positives = 222/261 (85%), Gaps = 1/261 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
MAD++C DCK+ TEVVFDHSAGDT+CSECGLVLE++S+DETSEWR FANES D+DPVRVG
Sbjct: 1 MADAFCTDCKKNTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP G S + LS SLG+ Q R S+PDR LI AFK+I+ MSDRL
Sbjct: 61 GPSNPLLTDGGLSTVIAKPN-GVSGDFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYKKVEDQK RGRNQ+A++AACLYIACRQE+KPRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIYKKVEDQKSTRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
KKEIGRAKE+IVK LEAE GQSVEMGTIHA D++RRFCSNLGMTNQ VKAAQEAVQKSE+
Sbjct: 180 KKEIGRAKEYIVKQLEAEKGQSVEMGTIHAGDFMRRFCSNLGMTNQVVKAAQEAVQKSEE 239
Query: 241 LDIRLILVFFSLFLVETHIQL 261
DIR V + ++ QL
Sbjct: 240 FDIRRSPVSIAAAVIYIITQL 260
>gi|255588003|ref|XP_002534470.1| transcription initiation factor iib, putative [Ricinus communis]
gi|223525233|gb|EEF27913.1| transcription initiation factor iib, putative [Ricinus communis]
Length = 312
Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust.
Identities = 193/244 (79%), Positives = 214/244 (87%), Gaps = 1/244 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M D+YC+DCKR TEVVFDHSAGDT+CSECGLVLE++S+DETSEWR FANES D+DPVRVG
Sbjct: 1 MGDAYCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP G S E LS SLG+ Q R S+PDR LI AFK+I+ MSDRL
Sbjct: 61 GPTNPLLADGGLSTVIAKPN-GASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYKKVEDQK RGRNQ+A++AACLYIACRQE+KPRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
KKEIGRAKE+IVK L E GQSVEMGTIHA D++RRFCSNLGM NQA+KAAQEAVQKSE+
Sbjct: 180 KKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAMKAAQEAVQKSEE 239
Query: 241 LDIR 244
DIR
Sbjct: 240 FDIR 243
>gi|115480363|ref|NP_001063775.1| Os09g0534800 [Oryza sativa Japonica Group]
gi|21362998|sp|Q8W0W3.1|TF2B_ORYSJ RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|18481632|gb|AAL73491.1|AF464908_1 general transcription factor TFIIB [Oryza sativa]
gi|50725809|dbj|BAD33339.1| Transcription initiation factor IIB [Oryza sativa Japonica Group]
gi|50726577|dbj|BAD34211.1| Transcription initiation factor IIB [Oryza sativa Japonica Group]
gi|113632008|dbj|BAF25689.1| Os09g0534800 [Oryza sativa Japonica Group]
gi|125564497|gb|EAZ09877.1| hypothetical protein OsI_32170 [Oryza sativa Indica Group]
gi|125606444|gb|EAZ45480.1| hypothetical protein OsJ_30135 [Oryza sativa Japonica Group]
gi|347737122|gb|AEP20532.1| transcription factor [Oryza sativa Japonica Group]
Length = 312
Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust.
Identities = 194/261 (74%), Positives = 222/261 (85%), Gaps = 1/261 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+DS+C DCK+ TEV FDHSAGDT+C+ECGLVLEA+SVDETSEWR FANESSD+DPVRVG
Sbjct: 1 MSDSFCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESSDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP G E LS SLG+ Q R S+PDR+LI AF++I+ M+DRL
Sbjct: 61 GPTNPLLTDGGLSTVIAKPN-GAQGEFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYKKVED K +RGRNQ+AI+AACLYIACRQE++PRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
KKEIGRAKEFIVK LE EMGQS+EMGTIHA D+LRRFCS LGM NQAVKAAQEAVQ+SE+
Sbjct: 180 KKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNQAVKAAQEAVQRSEE 239
Query: 241 LDIRLILVFFSLFLVETHIQL 261
LDIR + + ++ QL
Sbjct: 240 LDIRRSPISIAAAVIYMITQL 260
>gi|242045402|ref|XP_002460572.1| hypothetical protein SORBIDRAFT_02g031020 [Sorghum bicolor]
gi|241923949|gb|EER97093.1| hypothetical protein SORBIDRAFT_02g031020 [Sorghum bicolor]
Length = 312
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 193/261 (73%), Positives = 222/261 (85%), Gaps = 1/261 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+DS+C DCK+ TEV FDHSAGDT+C+ECGLVLEA+SVDETSEWR FANES+D+DPVRVG
Sbjct: 1 MSDSFCPDCKKQTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP G E LS SLG+ Q R S+PDR+LI AF++I+ M+DRL
Sbjct: 61 GPTNPLLTDGGLSTVIAKPN-GAQGEFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYKKVED K +RGRNQ+AI+AACLYIACRQE++PRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
KKEIGRAKEFIVK LE EMGQS+EMGTIHA D+LRRFCS LGM NQAVKAAQEAVQ+SE+
Sbjct: 180 KKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNQAVKAAQEAVQRSEE 239
Query: 241 LDIRLILVFFSLFLVETHIQL 261
LDIR + + ++ QL
Sbjct: 240 LDIRRSPISIAAAVIYMITQL 260
>gi|317106705|dbj|BAJ53205.1| JHL06B08.6 [Jatropha curcas]
Length = 312
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 192/244 (78%), Positives = 214/244 (87%), Gaps = 1/244 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M D++C+DCKR TEVVFDHSAGDT+CSECGLVLE++S+DETSEWR FANES D+DPVRVG
Sbjct: 1 MGDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP G S E LS SLG+ Q R S+PDR LI AFK+I+ MSDRL
Sbjct: 61 GPTNPLLADGGLSTVIAKPN-GASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYKKVEDQK RGRNQ+A++AACLYIACRQE+KPRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
KKEIGRAKE+IVK L E GQSVEMGTIHA D++RRFCSNLGM NQA+KAAQEAVQKSE+
Sbjct: 180 KKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAMKAAQEAVQKSEE 239
Query: 241 LDIR 244
DIR
Sbjct: 240 FDIR 243
>gi|449465789|ref|XP_004150610.1| PREDICTED: transcription initiation factor IIB-2-like [Cucumis
sativus]
gi|449529834|ref|XP_004171903.1| PREDICTED: transcription initiation factor IIB-2-like [Cucumis
sativus]
Length = 312
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 193/261 (73%), Positives = 221/261 (84%), Gaps = 1/261 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+D++C+DCKR TEVVFDHSAGDT+CSECGLVLE++S+DETSEWR FANES D+DPVRVG
Sbjct: 1 MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP G + E LS SLG+ Q R S+PDR LI AFK+I+ MSDRL
Sbjct: 61 GPTNPLLADGGLSTVIAKPN-GTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYK+VEDQK RGRNQ+A++AACLYIACRQE+KPRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
KKEIGRAKE+IVK L E GQSVEMGTIHA D++RRFCSNLGM NQAVKAAQEAVQKSE+
Sbjct: 180 KKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
Query: 241 LDIRLILVFFSLFLVETHIQL 261
DIR + + ++ QL
Sbjct: 240 FDIRRSPISIAAAVIYIITQL 260
>gi|351724605|ref|NP_001238343.1| transcription initiation factor IIB [Glycine max]
gi|1351222|sp|P48513.1|TF2B_SOYBN RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|945087|gb|AAB09756.1| transcription factor TFIIB [Glycine max]
Length = 313
Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust.
Identities = 191/261 (73%), Positives = 219/261 (83%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+D++C+DCKR TEVVFDHSAGDT+CSECGLVLE++S+DETSEWR FANES D+DP RVG
Sbjct: 1 MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPNRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP GG E LS SLG+ Q R S+PDR LIQAFK+I+ MSDRL
Sbjct: 61 GPSNPLLTDGGLSTVIAKPNGGGGGEFLSSSLGRWQNRGSNPDRALIQAFKTIATMSDRL 120
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYK+VEDQK RGRNQ+A++AACLYIACRQE+KPRTVKE CSVANG T
Sbjct: 121 GLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 180
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
KKEIGRAKE+IVK L E G +VEMGTIHA D++RRFCSNL M NQAVKAAQEAVQKSE+
Sbjct: 181 KKEIGRAKEYIVKQLGLENGNAVEMGTIHAGDFMRRFCSNLCMNNQAVKAAQEAVQKSEE 240
Query: 241 LDIRLILVFFSLFLVETHIQL 261
DIR + + ++ QL
Sbjct: 241 FDIRRSPISIAAAVIYIITQL 261
>gi|226503255|ref|NP_001149721.1| transcription initiation factor IIB [Zea mays]
gi|195629762|gb|ACG36522.1| transcription initiation factor IIB [Zea mays]
gi|414590059|tpg|DAA40630.1| TPA: transcription initiation factor IIB [Zea mays]
Length = 312
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 190/261 (72%), Positives = 222/261 (85%), Gaps = 1/261 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+DSYC DCK+ TEV FDHSAGDT+C+ECGLVLEA+SVDETSEWR FANES+D+DPVRVG
Sbjct: 1 MSDSYCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP G + LS SLG+ Q R S+PDR+LI AF++I+ M+DRL
Sbjct: 61 GPSNPLLTDGGLSTVIAKPN-GAQGDFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEI+KK+ED K +RGRNQ+AI+AACLYIACRQE++PRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIFKKIEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
KKEIGRAKEFIVK LE EMGQS+EMGTIHA D+LRRFCS LGMTNQAV AA+EAVQ+SE+
Sbjct: 180 KKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMTNQAVNAAKEAVQRSEE 239
Query: 241 LDIRLILVFFSLFLVETHIQL 261
LDIR + + ++ QL
Sbjct: 240 LDIRRSPISIAAAVIYMITQL 260
>gi|326531378|dbj|BAK05040.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 312
Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust.
Identities = 191/261 (73%), Positives = 221/261 (84%), Gaps = 1/261 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+D+YC DCK+ TEV FDHSAGDT+C+ECGLVLEA+SVDETSEWR FANES+D+DPVRVG
Sbjct: 1 MSDTYCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP G + LS SLG+ Q R S+PDR+LI AF++I+ M+DRL
Sbjct: 61 GPSNPLLTDGGLSTVIAKPN-GAHGDFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYKKVED K +RGRNQ+AI+AACLYIACRQE++PRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
KKEIGRAKEFIVK LE EMGQS+EMGTIHA D+LRRFCS LGM N AVKAAQEAVQ+SE+
Sbjct: 180 KKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNTAVKAAQEAVQRSEE 239
Query: 241 LDIRLILVFFSLFLVETHIQL 261
LDIR + + ++ QL
Sbjct: 240 LDIRRSPISIAAAVIYMITQL 260
>gi|357159642|ref|XP_003578512.1| PREDICTED: transcription initiation factor IIB-like [Brachypodium
distachyon]
Length = 312
Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust.
Identities = 189/244 (77%), Positives = 215/244 (88%), Gaps = 1/244 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+D++C DCK+ TEV FDHSAGDT+C+ECGLVLEA+SVDETSEWR FANES+D+DPVRVG
Sbjct: 1 MSDTFCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP G E LS SLG+ Q R S+PDR+LI AF++I+ M+DRL
Sbjct: 61 GPSNPLLTDGGLSTVIAKPN-GAHGEFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYKKVED K +RGRNQ+AI+AACLYIACRQE++PRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
KKEIGRAKEFIVK LE EMGQS+EMGTIHA D+LRRFCS LGM N AVKAAQEAVQ+SE+
Sbjct: 180 KKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNTAVKAAQEAVQRSEE 239
Query: 241 LDIR 244
LDIR
Sbjct: 240 LDIR 243
>gi|297829558|ref|XP_002882661.1| transcription initiation factor IIB-2 [Arabidopsis lyrata subsp.
lyrata]
gi|297328501|gb|EFH58920.1| transcription initiation factor IIB-2 [Arabidopsis lyrata subsp.
lyrata]
Length = 312
Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust.
Identities = 189/261 (72%), Positives = 221/261 (84%), Gaps = 1/261 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+D++C+DCKR TEVVFDHSAGDT+CSECGLVLE++S+DETSEWR FANES D+DPVRVG
Sbjct: 1 MSDAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGL+TVI+KP G S + LS SLG+ Q R S+PDR LI AFK+I+ M+DRL
Sbjct: 61 GPTNPLLADGGLTTVISKPN-GSSGDFLSSSLGRWQNRGSNPDRGLIVAFKTIATMADRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYK+VEDQK RGRNQ+A++AACLYIACRQE+KPRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
KKEIGRAKE+IVK L E GQSVEMGTIHA D++RRFCSNLGMTNQ VKAAQE+VQKSE+
Sbjct: 180 KKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQESVQKSEE 239
Query: 241 LDIRLILVFFSLFLVETHIQL 261
DIR + + ++ QL
Sbjct: 240 FDIRRSPISIAAAVIYIITQL 260
>gi|414590060|tpg|DAA40631.1| TPA: hypothetical protein ZEAMMB73_839050 [Zea mays]
Length = 330
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 188/244 (77%), Positives = 216/244 (88%), Gaps = 1/244 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+DSYC DCK+ TEV FDHSAGDT+C+ECGLVLEA+SVDETSEWR FANES+D+DPVRVG
Sbjct: 1 MSDSYCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP G + LS SLG+ Q R S+PDR+LI AF++I+ M+DRL
Sbjct: 61 GPSNPLLTDGGLSTVIAKPN-GAQGDFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEI+KK+ED K +RGRNQ+AI+AACLYIACRQE++PRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIFKKIEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
KKEIGRAKEFIVK LE EMGQS+EMGTIHA D+LRRFCS LGMTNQAV AA+EAVQ+SE+
Sbjct: 180 KKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMTNQAVNAAKEAVQRSEE 239
Query: 241 LDIR 244
LDIR
Sbjct: 240 LDIR 243
>gi|15228267|ref|NP_187644.1| transcription initiation factor IIB-2 [Arabidopsis thaliana]
gi|21363045|sp|Q9SS44.1|TF2B2_ARATH RecName: Full=Transcription initiation factor IIB-2; AltName:
Full=General transcription factor TFIIB-2;
Short=AtTFIIB2
gi|6056193|gb|AAF02810.1|AC009400_6 transcription initiation factor IIB (TFIIB) [Arabidopsis thaliana]
gi|15215784|gb|AAK91437.1| AT3g10330/F14P13_7 [Arabidopsis thaliana]
gi|16974427|gb|AAL31139.1| AT3g10330/F14P13_7 [Arabidopsis thaliana]
gi|21593436|gb|AAM65403.1| transcription initiation factor IIB (TFIIB) [Arabidopsis thaliana]
gi|39545880|gb|AAR28003.1| TFIIB2 [Arabidopsis thaliana]
gi|332641371|gb|AEE74892.1| transcription initiation factor IIB-2 [Arabidopsis thaliana]
Length = 312
Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust.
Identities = 186/244 (76%), Positives = 214/244 (87%), Gaps = 1/244 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+D++C+DCKR TEVVFDHSAGDT+CSECGLVLE++S+DETSEWR FANES D+DPVRVG
Sbjct: 1 MSDAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGL+TVI+KP G S + LS SLG+ Q R S+PDR LI AFK+I+ M+DRL
Sbjct: 61 GPTNPLLADGGLTTVISKPN-GSSGDFLSSSLGRWQNRGSNPDRGLIVAFKTIATMADRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYK+VEDQK RGRNQ+A++AACLYIACRQE+KPRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
KKEIGRAKE+IVK L E GQ VEMGTIHA D++RRFCSNLGMTNQ VKAAQE+VQKSE+
Sbjct: 180 KKEIGRAKEYIVKQLGLETGQLVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQESVQKSEE 239
Query: 241 LDIR 244
DIR
Sbjct: 240 FDIR 243
>gi|224138070|ref|XP_002322722.1| predicted protein [Populus trichocarpa]
gi|222867352|gb|EEF04483.1| predicted protein [Populus trichocarpa]
Length = 312
Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust.
Identities = 190/261 (72%), Positives = 216/261 (82%), Gaps = 1/261 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M D++C+DCKR TEVVFDHSAGDT+CSECGLVLE++S+DETSEWR FANES D+DPVRVG
Sbjct: 1 MGDAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP G S E LS SLG+ Q R S+PDR LI AFK+I+ MSDRL
Sbjct: 61 GPTNPLLTDGGLSTVIAKPN-GASGEFLSSSLGRWQNRGSNPDRGLITAFKTIATMSDRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYKKVEDQK RGRNQ+A++AACLYIACRQE+KPRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
KKEIGRAKE+IVK L E GQSVEMGTIHA D++RRFCSNLGM+N VKAA EAV+ SE
Sbjct: 180 KKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMSNHTVKAATEAVKTSEQ 239
Query: 241 LDIRLILVFFSLFLVETHIQL 261
DIR + + ++ QL
Sbjct: 240 FDIRRSPISIAAAVIYIITQL 260
>gi|194695160|gb|ACF81664.1| unknown [Zea mays]
gi|414886465|tpg|DAA62479.1| TPA: hypothetical protein ZEAMMB73_928076 [Zea mays]
gi|414886466|tpg|DAA62480.1| TPA: hypothetical protein ZEAMMB73_928076 [Zea mays]
Length = 312
Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust.
Identities = 185/244 (75%), Positives = 214/244 (87%), Gaps = 1/244 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+DS+C DCK+ TEV FDHSAGD +C+ECGLVLEA+SVDETSEWR FANES+D+DPVRVG
Sbjct: 1 MSDSFCPDCKKHTEVAFDHSAGDMVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP G + LS SLG+ Q R S+PDR+LI AF++I+ M+DRL
Sbjct: 61 GPTNPLLTDGGLSTVIAKPN-GAQGDFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYKKVED K +RGRNQ+AI+AACLYIACRQE++PRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
KKEIGRAKEFIVK LE EMGQS+EMGTIHA ++LRRFCS LGM NQAV+AAQ+AV+ SE+
Sbjct: 180 KKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGNFLRRFCSTLGMNNQAVRAAQDAVKHSEE 239
Query: 241 LDIR 244
LDIR
Sbjct: 240 LDIR 243
>gi|356504767|ref|XP_003521166.1| PREDICTED: transcription initiation factor IIB-2-like [Glycine max]
Length = 306
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 189/261 (72%), Positives = 219/261 (83%), Gaps = 7/261 (2%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M++++C+DCKR TEVVFDHSAGDT+CSECGLVLE++S+DETSEWR FANES D+DPVRVG
Sbjct: 1 MSETFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP GGS E LS S+G+ Q +R LI AFK+I+ MSDRL
Sbjct: 61 GPTNPLLTDGGLSTVIAKPN-GGSGEFLSSSVGRWQ------NRGLIVAFKTIATMSDRL 113
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYK+VEDQK RGRNQ+A++AACLYIACRQE+KPRTVKE CSVANG T
Sbjct: 114 GLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 173
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
KKEIGRAKE+IVK L E GQSVE+GTIHA D++RRFCSNLGMTNQAVKAAQEAVQKSE+
Sbjct: 174 KKEIGRAKEYIVKQLGLEQGQSVEIGTIHAGDFMRRFCSNLGMTNQAVKAAQEAVQKSEE 233
Query: 241 LDIRLILVFFSLFLVETHIQL 261
DIR + + ++ QL
Sbjct: 234 FDIRRSPISIAAAVIYIITQL 254
>gi|224090077|ref|XP_002308933.1| predicted protein [Populus trichocarpa]
gi|222854909|gb|EEE92456.1| predicted protein [Populus trichocarpa]
Length = 312
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 188/261 (72%), Positives = 216/261 (82%), Gaps = 1/261 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M D++C+DCK+ TEVV DHSAGDT+CSECGLVLE++S+DETSEWRIFANES D+DPVRVG
Sbjct: 1 MGDAFCSDCKKHTEVVCDHSAGDTVCSECGLVLESHSIDETSEWRIFANESGDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP G S + LS SLG+ Q R S+PDR LI AFK+I+ MSDRL
Sbjct: 61 GPTNPLLTDGGLSTVIAKPN-GASGDFLSTSLGRWQNRGSNPDRGLILAFKTIATMSDRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYKKVEDQK RGRNQ+A++AACLYIACRQE+KPRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
KKEIGRAKE+IVK L E GQSVEMGTIHA D++RRFCSNLGM+N VKAA EAV+ SE
Sbjct: 180 KKEIGRAKEYIVKQLGLEAGQSVEMGTIHAGDFMRRFCSNLGMSNHTVKAATEAVKTSEQ 239
Query: 241 LDIRLILVFFSLFLVETHIQL 261
DIR + + ++ QL
Sbjct: 240 FDIRRSPISIAAAVIYIITQL 260
>gi|357509669|ref|XP_003625123.1| Transcription initiation factor IIB [Medicago truncatula]
gi|355500138|gb|AES81341.1| Transcription initiation factor IIB [Medicago truncatula]
Length = 313
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 187/262 (71%), Positives = 219/262 (83%), Gaps = 2/262 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+D++C+DCKR TEVVFDHSAGD +CSECGLVLE++S+DETSEWR FANES D+DPVRVG
Sbjct: 1 MSDAFCSDCKRATEVVFDHSAGDAVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP G S + LS SLG+ Q R S+PDR LI AFK+I M++RL
Sbjct: 61 GPSNPLLTDGGLSTVIAKPN-GASGDFLSSSLGRWQNRGSNPDRGLILAFKTIGTMAERL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYK+VEDQK RGRNQ+A++AACLYIACRQE+KPRTVKE CS+ANG T
Sbjct: 120 GLVPTIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSIANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEM-GQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSE 239
KKEIGRAKE+IVK L E GQSVEMGTIHA D++RRFCSNLGM +QAVKAAQE+VQKSE
Sbjct: 180 KKEIGRAKEYIVKQLGLENGGQSVEMGTIHAGDFMRRFCSNLGMNHQAVKAAQESVQKSE 239
Query: 240 DLDIRLILVFFSLFLVETHIQL 261
+ DIR + + ++ QL
Sbjct: 240 EFDIRRSPISIAAAVIYIITQL 261
>gi|148907440|gb|ABR16853.1| unknown [Picea sitchensis]
Length = 313
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 184/239 (76%), Positives = 210/239 (87%), Gaps = 1/239 (0%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DCK+ TEVVFDHSAGDT+C ECGLVLEA+S+DETSEWR FANE+ D+DPVRVGGP NP
Sbjct: 7 CPDCKKQTEVVFDHSAGDTVCVECGLVLEAHSIDETSEWRTFANETGDNDPVRVGGPSNP 66
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTT 125
LL+ GGLSTVI+KP G S + LS SLG+ Q R S+PDR+LI AFK+I MSDRLGLV T
Sbjct: 67 LLTDGGLSTVISKPN-GASGDFLSSSLGRWQNRGSNPDRSLIMAFKTIGTMSDRLGLVAT 125
Query: 126 IKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIG 185
IKDRANEIYKKVED K +RGRNQ+AI+AACLYIACRQE+KPRTVKE CSVANG +KKE+G
Sbjct: 126 IKDRANEIYKKVEDSKSIRGRNQDAILAACLYIACRQEDKPRTVKEICSVANGASKKEVG 185
Query: 186 RAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDIR 244
RAKEFIVK LE EMG+S+EMGTIHA D+LRRFCS+LGM +QAVKAA EAV+KSE+LDIR
Sbjct: 186 RAKEFIVKQLEEEMGKSMEMGTIHAGDFLRRFCSHLGMGHQAVKAATEAVKKSEELDIR 244
>gi|356500515|ref|XP_003519077.1| PREDICTED: transcription initiation factor IIB-like [Glycine max]
Length = 314
Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust.
Identities = 189/262 (72%), Positives = 217/262 (82%), Gaps = 1/262 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+D++C+DCKR TEVVFDHSAGDT+CSECGLVLE++S+DETSEWR FANES D+DP RVG
Sbjct: 1 MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPNRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGST-ELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDR 119
GP NPLL+ GGLSTVIAKP GG E LS SLG+ Q R S+PDR LI AFK+I+ MSDR
Sbjct: 61 GPSNPLLTDGGLSTVIAKPNGGGGGGEFLSSSLGRWQNRGSNPDRALIIAFKTIATMSDR 120
Query: 120 LGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179
LGLV TIKDRANEIYK+VEDQK RGRNQ+A++AACLYIACRQE+KPRTVKE CSVANG
Sbjct: 121 LGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGA 180
Query: 180 TKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSE 239
TKKEIGRAKE+IVK L E G +VEMGTIHA D++RRFCSNL M NQAVKAAQEAV KSE
Sbjct: 181 TKKEIGRAKEYIVKQLGLENGNAVEMGTIHAGDFMRRFCSNLCMNNQAVKAAQEAVHKSE 240
Query: 240 DLDIRLILVFFSLFLVETHIQL 261
+ DIR + + ++ QL
Sbjct: 241 EFDIRRSPISIAAAVIYIITQL 262
>gi|1841399|emb|CAA84309.1| AtTFIIB2 [Arabidopsis thaliana]
Length = 301
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 179/232 (77%), Positives = 203/232 (87%), Gaps = 1/232 (0%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
TEVVFDHSAGDT+CSECGLVLE++S+DETSEWR FANES D+DPVRVGGP NPLL+ GGL
Sbjct: 2 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL 61
Query: 73 STVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
+TVI+KP G S + LS SLG+ Q R S+PDR LI AFK+I+ M+DRLGLV TIKDRANE
Sbjct: 62 TTVISKPN-GSSGDFLSSSLGRWQNRGSNPDRGLIVAFKTIATMADRLGLVATIKDRANE 120
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
IYK+VEDQK RGRNQ+A++AACLYIACRQE+KPRTVKE CSVANG TKKEIGRAKE+IV
Sbjct: 121 IYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIV 180
Query: 193 KHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDIR 244
K L E GQ VEMGTIHA D++RRFCSNLGMTNQ VKAAQE+VQKSE+ DIR
Sbjct: 181 KQLGLETGQLVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQESVQKSEEFDIR 232
>gi|297827809|ref|XP_002881787.1| hypothetical protein ARALYDRAFT_903484 [Arabidopsis lyrata subsp.
lyrata]
gi|297327626|gb|EFH58046.1| hypothetical protein ARALYDRAFT_903484 [Arabidopsis lyrata subsp.
lyrata]
Length = 312
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 178/261 (68%), Positives = 215/261 (82%), Gaps = 1/261 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+D+YC DCK+ TE+V DHSAGDT+CSECGLVLE++S+DETSEWR FANESS+ DP RVG
Sbjct: 1 MSDAYCTDCKKETELVVDHSAGDTLCSECGLVLESHSIDETSEWRTFANESSNSDPNRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ L+TVIAKP G S + LS SLG+ Q R+S+ DR LIQAFK+I+ MS+RL
Sbjct: 61 GPTNPLLADSALTTVIAKPN-GSSGDFLSSSLGRWQNRNSNSDRGLIQAFKTIATMSERL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYK++EDQK RGRNQ+A+ AACLYIACRQE+KPRT+KE C +ANG T
Sbjct: 120 GLVATIKDRANEIYKRLEDQKTTRGRNQDALYAACLYIACRQEDKPRTIKEICVIANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
KKEIGRAK++IVK L + GQSVE+GTIHA D++RRFCSNLGM+N AVKAAQEAVQKSE+
Sbjct: 180 KKEIGRAKDYIVKTLGLDPGQSVELGTIHAGDFMRRFCSNLGMSNHAVKAAQEAVQKSEE 239
Query: 241 LDIRLILVFFSLFLVETHIQL 261
DIR + + ++ QL
Sbjct: 240 FDIRRSPISIAAVVIYIITQL 260
>gi|356570450|ref|XP_003553400.1| PREDICTED: transcription initiation factor IIB-like [Glycine max]
Length = 296
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 184/261 (70%), Positives = 213/261 (81%), Gaps = 17/261 (6%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+D++C+DCKR TEVVFDHSAGDT+CSECGLVLE++S+DETSEWR FANES D+DPVRVG
Sbjct: 1 MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP+ GGS+E LS SLG+ Q+R ++ F RL
Sbjct: 61 GPTNPLLTDGGLSTVIAKPS-GGSSEFLSSSLGRWQSR--------VKNF--------RL 103
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYK+VEDQK RGRNQ+A++AACLYIACRQE+KPRTVKE CSVANG T
Sbjct: 104 GLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 163
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
KKEIGRAKE+IVK L E GQSVEMGTIHA D++RRFCSNLGMTNQAVKAAQEAVQKSE+
Sbjct: 164 KKEIGRAKEYIVKQLGLEQGQSVEMGTIHAGDFMRRFCSNLGMTNQAVKAAQEAVQKSEE 223
Query: 241 LDIRLILVFFSLFLVETHIQL 261
DIR + + ++ QL
Sbjct: 224 FDIRRSPISIAAAVIYIITQL 244
>gi|15227397|ref|NP_181694.1| transcription initiation factor IIB-1 [Arabidopsis thaliana]
gi|1351221|sp|P48512.1|TF2B1_ARATH RecName: Full=Transcription initiation factor IIB-1; AltName:
Full=General transcription factor TFIIB-1;
Short=AtTFIIB1
gi|945085|gb|AAB09755.1| transcription factor TFIIB [Arabidopsis thaliana]
gi|2618697|gb|AAB84344.1| transcription factor IIB (TFIIB) [Arabidopsis thaliana]
gi|20260322|gb|AAM13059.1| transcription factor IIB [Arabidopsis thaliana]
gi|21554842|gb|AAM63705.1| transcription factor IIB (TFIIB) [Arabidopsis thaliana]
gi|22136182|gb|AAM91169.1| transcription factor IIB [Arabidopsis thaliana]
gi|39545878|gb|AAR28002.1| TFIIB1 [Arabidopsis thaliana]
gi|330254915|gb|AEC10009.1| transcription initiation factor IIB-1 [Arabidopsis thaliana]
Length = 312
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 176/261 (67%), Positives = 214/261 (81%), Gaps = 1/261 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+D+YC DCK+ TE+V DHSAGDT+CSECGLVLE++S+DETSEWR FANESS+ DP RVG
Sbjct: 1 MSDAYCTDCKKETELVVDHSAGDTLCSECGLVLESHSIDETSEWRTFANESSNSDPNRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ L+TVIAKP G S + LS SLG+ Q R+S+ DR LIQAFK+I+ MS+RL
Sbjct: 61 GPTNPLLADSALTTVIAKPN-GSSGDFLSSSLGRWQNRNSNSDRGLIQAFKTIATMSERL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANE+YK++EDQK RGRNQ+A+ AACLYIACRQE+KPRT+KE C +ANG T
Sbjct: 120 GLVATIKDRANELYKRLEDQKSSRGRNQDALYAACLYIACRQEDKPRTIKEICVIANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
KKEIGRAK++IVK L E GQSV++GTIHA D++RRFCSNL M+N AVKAAQEAVQKSE+
Sbjct: 180 KKEIGRAKDYIVKTLGLEPGQSVDLGTIHAGDFMRRFCSNLAMSNHAVKAAQEAVQKSEE 239
Query: 241 LDIRLILVFFSLFLVETHIQL 261
DIR + + ++ QL
Sbjct: 240 FDIRRSPISIAAVVIYIITQL 260
>gi|147790475|emb|CAN74371.1| hypothetical protein VITISV_004775 [Vitis vinifera]
Length = 312
Score = 338 bits (866), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 168/232 (72%), Positives = 188/232 (81%), Gaps = 1/232 (0%)
Query: 30 GLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGSTELLS 89
GL + +TSEWR FANES D+DPVRVGGP NPLL+ GGLSTVIAKP G S + LS
Sbjct: 30 GLCWSLTRLMQTSEWRTFANESGDNDPVRVGGPSNPLLTDGGLSTVIAKPN-GVSGDFLS 88
Query: 90 GSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQE 149
SLG+ Q R S+PDR LI AFK+I+ MSDRLGLV TIKDRANEIYKKVEDQK RGRNQ+
Sbjct: 89 SSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSTRGRNQD 148
Query: 150 AIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIH 209
A++AACLYIACRQE+KPRTVKE CSVANG TKKEIGRAKE+IVK LEAE GQSVEMGTIH
Sbjct: 149 ALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLEAEKGQSVEMGTIH 208
Query: 210 ASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDIRLILVFFSLFLVETHIQL 261
A D++RRFCSNLGMTNQ VKAAQEAVQKSE+ DIR V + ++ QL
Sbjct: 209 AGDFMRRFCSNLGMTNQVVKAAQEAVQKSEEFDIRRSPVSIAAAVIYIITQL 260
>gi|168039347|ref|XP_001772159.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676490|gb|EDQ62972.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 312
Score = 334 bits (856), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 163/245 (66%), Positives = 200/245 (81%), Gaps = 4/245 (1%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M + C +C++ TEVV DH+AGD +C+ECGLVLE +SVDE+SEWR F++ +S DPVRVG
Sbjct: 1 MNKTVCPECRKATEVVVDHAAGDMVCAECGLVLEQHSVDESSEWRTFSDSTS-SDPVRVG 59
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLST+I+KP G + +S SLG+ Q R S+PDR+LI AF+SI M+DRL
Sbjct: 60 GPSNPLLTDGGLSTIISKPN-GAQGDFMS-SLGRWQNRGSNPDRSLIIAFRSIGTMADRL 117
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVK-EFCSVANGT 179
GLV+TIKDRANEIYKKVED K +RGR+Q+AI+AACLYIACRQE+KPRT K E CSVANG
Sbjct: 118 GLVSTIKDRANEIYKKVEDLKSIRGRSQDAILAACLYIACRQEDKPRTFKAEICSVANGA 177
Query: 180 TKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSE 239
+KK+IGRA +FIVK LE +MG S+EMGTIHA D+LRRFCS+L M N V+AA E V+KSE
Sbjct: 178 SKKDIGRATKFIVKQLEEDMGISMEMGTIHAGDFLRRFCSHLNMENNEVRAATETVKKSE 237
Query: 240 DLDIR 244
LDIR
Sbjct: 238 MLDIR 242
>gi|302766794|ref|XP_002966817.1| hypothetical protein SELMODRAFT_87129 [Selaginella moellendorffii]
gi|300164808|gb|EFJ31416.1| hypothetical protein SELMODRAFT_87129 [Selaginella moellendorffii]
Length = 310
Score = 333 bits (855), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 157/244 (64%), Positives = 197/244 (80%), Gaps = 3/244 (1%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M + C DC+R ++V DH+AGDT+C ECGLVLEA+ +DE+SEWR F+++S +DPVRVG
Sbjct: 1 MQKTVCPDCRREVDIVVDHAAGDTVCMECGLVLEAHFIDESSEWRTFSDDSGSNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLST I++ G ++ +LGK Q ++PDR L+ AFK+I M+DRL
Sbjct: 61 GPSNPLLTDGGLSTTISR---GNGSQGDYAALGKWQNHGTNPDRALLLAFKTIGTMADRL 117
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV+TIKDRA+EIYKKVED K +RGR+Q+AI+AACLYIACRQE+KPRT KE SVANG T
Sbjct: 118 GLVSTIKDRADEIYKKVEDMKSIRGRSQDAILAACLYIACRQEDKPRTFKEIHSVANGAT 177
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
KKEIGRA FIVK LE EMG+S+ MG+IHA D+LRRFCS+LGMTNQAV+AA + V+K E+
Sbjct: 178 KKEIGRATNFIVKRLEEEMGKSMSMGSIHAGDFLRRFCSHLGMTNQAVRAATDTVKKVEE 237
Query: 241 LDIR 244
LDIR
Sbjct: 238 LDIR 241
>gi|302755524|ref|XP_002961186.1| hypothetical protein SELMODRAFT_266576 [Selaginella moellendorffii]
gi|300172125|gb|EFJ38725.1| hypothetical protein SELMODRAFT_266576 [Selaginella moellendorffii]
Length = 300
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 147/244 (60%), Positives = 185/244 (75%), Gaps = 13/244 (5%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M + C DC+R ++V DH+AGDT+C ECGL+ F+++S +DPVRVG
Sbjct: 1 MQKTVCPDCRREVDIVVDHAAGDTVCMECGLL----------RMETFSDDSGSNDPVRVG 50
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLST I++ G ++ +LGK Q ++PDR L+ AFK+I M+DRL
Sbjct: 51 GPSNPLLTDGGLSTTISR---GNGSQGDYAALGKWQNHGTNPDRALLLAFKTIGTMADRL 107
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV+TIKDRA+EIYKKVED K +RGR+Q+AI+AACLYIACRQE+KPRT KE SVANG T
Sbjct: 108 GLVSTIKDRADEIYKKVEDMKSIRGRSQDAILAACLYIACRQEDKPRTFKEIHSVANGAT 167
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
KKEIGRA FIVK LE EMG+S+ MG+IHA D+LRRFCS+LGMTNQAV+AA + V+K E+
Sbjct: 168 KKEIGRATNFIVKRLEEEMGKSMSMGSIHAGDFLRRFCSHLGMTNQAVRAATDTVKKVEE 227
Query: 241 LDIR 244
LDIR
Sbjct: 228 LDIR 231
>gi|168012200|ref|XP_001758790.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689927|gb|EDQ76296.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 312
Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 135/244 (55%), Positives = 177/244 (72%), Gaps = 4/244 (1%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M ++ C++C+++T+VV D +AGD +C+ECGLVLE SVDET EWR FA+ SS D R+G
Sbjct: 1 MYETVCSECRKVTQVVEDRAAGDVLCAECGLVLEQRSVDETREWRWFADSSS-IDRERIG 59
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLS+ I+K + G +++S S+ + PD++ I AF+SI M+DRL
Sbjct: 60 GPSNPLLADGGLSSFISK-SNGAQGDVMS-SILRQSKLGLIPDQSRIIAFRSIGNMADRL 117
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVK-EFCSVANGT 179
GLV+TIKDRANEIYK V D K R R+ EAI+A+CLYIACRQE+KPRT K E CSV+NG
Sbjct: 118 GLVSTIKDRANEIYKNVVDLKLTRNRSHEAILASCLYIACRQEDKPRTFKEEICSVSNGA 177
Query: 180 TKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSE 239
+K + GR + +VK +E MG S+EMGTIHA D+ RRFCS+L M V+A E V+KSE
Sbjct: 178 SKTDTGRITKKLVKQIEKGMGISMEMGTIHAGDFSRRFCSHLDMEKNEVRAITETVKKSE 237
Query: 240 DLDI 243
L I
Sbjct: 238 MLVI 241
>gi|242088689|ref|XP_002440177.1| hypothetical protein SORBIDRAFT_09g027310 [Sorghum bicolor]
gi|241945462|gb|EES18607.1| hypothetical protein SORBIDRAFT_09g027310 [Sorghum bicolor]
Length = 311
Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 126/257 (49%), Positives = 167/257 (64%), Gaps = 13/257 (5%)
Query: 1 MADS--YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS--DHDP 56
MAD YC DC R TEVV DH+ GDTIC+EC LVLEA+ +DE SEWR FA++ D DP
Sbjct: 1 MADESVYCPDCHRTTEVVLDHATGDTICTECALVLEAHYIDEGSEWRNFADDGGGEDRDP 60
Query: 57 VRVGGPLNPLLSGGGLSTVIA----KPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKS 112
RVGGP +P LS L T IA + T G L A + ++ L+ AF +
Sbjct: 61 SRVGGPSDPFLSNTPLVTRIAYAGPQKTQGEGGHALPRMRVSAGAGGADHEQALVDAFHA 120
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQK--PLRGRNQEAIVAACLYIACRQENKPRTVK 170
I+ M+DRLGLV TI+DRA ++YK++++ K P RG+ ++ AACLY+ACR E KPRT K
Sbjct: 121 IADMADRLGLVGTIRDRAKDVYKRLDEAKACPTRGKKRDVFYAACLYVACRNEGKPRTYK 180
Query: 171 EFCSV--ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAV 228
E +V A + KKEIG+ I K L E GQ +++G + A+DY+RRFCS LGM NQ +
Sbjct: 181 ELATVTAAGASAKKEIGKMTTLIKKVLGEEAGQVMDIGVVRAADYMRRFCSRLGMGNQEM 240
Query: 229 KAAQEAVQKSED-LDIR 244
+AAQEA ++ E+ LD+R
Sbjct: 241 RAAQEAARRLENGLDVR 257
>gi|194701258|gb|ACF84713.1| unknown [Zea mays]
Length = 198
Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 106/129 (82%), Positives = 119/129 (92%)
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+DRLGLV TIKDRANEI+KK+ED K +RGRNQ+AI+AACLYIACRQE++PRTVKE CSV
Sbjct: 1 MADRLGLVATIKDRANEIFKKIEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSV 60
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
ANG TKKEIGRAKEFIVK LE EMGQS+EMGTIHA D+LRRFCS LGMTNQAV AA+EAV
Sbjct: 61 ANGATKKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMTNQAVNAAKEAV 120
Query: 236 QKSEDLDIR 244
Q+SE+LDIR
Sbjct: 121 QRSEELDIR 129
>gi|413946339|gb|AFW78988.1| hypothetical protein ZEAMMB73_349781 [Zea mays]
Length = 311
Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 120/257 (46%), Positives = 166/257 (64%), Gaps = 13/257 (5%)
Query: 1 MAD---SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS--DHD 55
MAD +YC DC R TEVV DH+ GDTIC+EC LVLEA+ +DE SEWR FA++ D D
Sbjct: 1 MADDEPNYCPDCHRTTEVVLDHATGDTICTECALVLEAHYIDEGSEWRNFADDGGGEDRD 60
Query: 56 PVRVGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSS---HPDRNLIQAFKS 112
P RVGG +P L+ L T IA + +L +L +S ++ L++ F +
Sbjct: 61 PSRVGGSSDPFLANMPLVTQIAYAGPQKAQGEGGHALPRLHVSASGGAGGEQTLVEGFHA 120
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQK--PLRGRNQEAIVAACLYIACRQENKPRTVK 170
I+ M+DRLGLV TI+DRA ++YK++ + + P RG+ ++A AACLY+ACR E KPRT K
Sbjct: 121 IADMADRLGLVATIRDRAKDVYKRLGEARACPGRGKKRDAFYAACLYVACRNEGKPRTYK 180
Query: 171 EFCSVAN--GTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAV 228
E +V + KKEIG+ I K L E GQ +++G + SDY+RRFCS LGM N+ +
Sbjct: 181 ELATVTSDGAAAKKEIGKMTMLIKKVLGEEAGQVMDIGVVRPSDYMRRFCSRLGMGNREM 240
Query: 229 KAAQEAVQKSED-LDIR 244
+AAQEA ++ E+ LD+R
Sbjct: 241 RAAQEAARRLENGLDVR 257
>gi|115465251|ref|NP_001056225.1| Os05g0548200 [Oryza sativa Japonica Group]
gi|57863857|gb|AAW56898.1| putative transcription initiation factor TFIIB [Oryza sativa
Japonica Group]
gi|113579776|dbj|BAF18139.1| Os05g0548200 [Oryza sativa Japonica Group]
gi|215741580|dbj|BAG98075.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 316
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/254 (47%), Positives = 166/254 (65%), Gaps = 15/254 (5%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANE--SSDHDPVRVGG 61
+YC DC+R T VV DH+ GDTIC+EC LVL+A +DETSEWR FAN+ S D DP RVG
Sbjct: 10 AYCPDCRRATAVVLDHTTGDTICTECALVLDARYIDETSEWRTFANDGASDDRDPNRVGD 69
Query: 62 PLNPLL----SGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMS 117
+P L G ++ A P + + LL+ ++ P+ L+ AF+ I+ M+
Sbjct: 70 RADPFLPDHVGGTTIAYSSAPPKSADAAPLLTRR--RVDVVGPSPENALVAAFRGIADMA 127
Query: 118 DRLGLVTTIKDRANEIYKKVED--QKPL-RGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
DRLGLV TI+DRA E++KK+ + K L RGRN++A+ AACL+IACR E PRT KE S
Sbjct: 128 DRLGLVATIRDRAKEVFKKLGEAPTKGLPRGRNRDAVYAACLFIACRNEGMPRTYKELAS 187
Query: 175 VA--NGTTKKEIGRAKEFIVKHL-EAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
V KKEIGR I KHL + G+++++G + ++DYLRRFCS LG+ +Q V+AA
Sbjct: 188 VTAEGAAAKKEIGRLTTLIKKHLGDQGEGRAMDIGVVRSTDYLRRFCSRLGLGHQDVRAA 247
Query: 232 QEAVQKSED-LDIR 244
+AV++ E+ LD+R
Sbjct: 248 GDAVRRLEERLDVR 261
>gi|224141495|ref|XP_002324107.1| predicted protein [Populus trichocarpa]
gi|222867109|gb|EEF04240.1| predicted protein [Populus trichocarpa]
Length = 297
Score = 219 bits (559), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 118/240 (49%), Positives = 160/240 (66%), Gaps = 12/240 (5%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
YC DCK T +V DH GDTICS+CGLVLE+ +DE +EWR F ++++D DP RVG +N
Sbjct: 1 YCKDCKANTYIVLDHCTGDTICSDCGLVLESCYIDEIAEWRTFNDDNNDKDPNRVGYNVN 60
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLLS G L T+I+ ++ + Q S+ DR L+Q F I +++RLGLV
Sbjct: 61 PLLSQGNLKTLISNNKG-------DHAIPRWQDGVSNSDRVLLQGFDIIEIIANRLGLVR 113
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
IKDRA EI+KK+E+QK R +++I AACL+I+ R+ PRT+ E SV G TKKEI
Sbjct: 114 PIKDRAKEIFKKIEEQKTCVMRKRDSICAACLFISSRENKLPRTLNEISSVVYGVTKKEI 173
Query: 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDIR 244
+A + I +H+E E +MGT++ S+ +RRFCSNLGM N AVKA EAV+K +D+DIR
Sbjct: 174 NKAVQSIKRHVELE-----DMGTLNPSELVRRFCSNLGMKNHAVKAVHEAVEKIQDVDIR 228
>gi|24414276|gb|AAN59779.1| Putative transcription initiation factor IIB [Oryza sativa Japonica
Group]
gi|108706635|gb|ABF94430.1| Transcription factor TFIIB repeat family protein [Oryza sativa
Japonica Group]
gi|125542744|gb|EAY88883.1| hypothetical protein OsI_10362 [Oryza sativa Indica Group]
Length = 308
Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 121/245 (49%), Positives = 158/245 (64%), Gaps = 7/245 (2%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS--DHDPVRVGGP 62
YC +C R T VV DH+ GDTIC+EC LVLE +DETSEWR F++ S D DP RVGG
Sbjct: 11 YCPECHRTTVVVVDHATGDTICTECALVLEERYIDETSEWRTFSDAGSGEDRDPNRVGGC 70
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGL 122
+P LS L TV+A P + + S ++ ++S D +L AF++IS M+DRL L
Sbjct: 71 SDPFLSHAELGTVVA-PAKRQAKDTASPPHVRVDSKSGQ-DSSLAVAFRAISDMADRLQL 128
Query: 123 VTTIKDRANEIYKKVEDQKP-LRGRNQEAIVAACLYIACRQENKPRTVKEFCSVA-NGTT 180
V TI+DRA E++KK+E+ K R RN++A AACL+IACR E PRT+KE SV +
Sbjct: 129 VATIRDRAKELFKKMEEAKLCARVRNRDAAYAACLHIACRNEGNPRTLKELASVMRDCQD 188
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
KKEIGR + I +HL E G ++EMG + A+DY+ RF S LGM V+ AQ A Q ED
Sbjct: 189 KKEIGRMERIIRRHLGEEAGTAMEMGVVRAADYMSRFGSRLGMGKPEVREAQRAAQTLED 248
Query: 241 -LDIR 244
LD+R
Sbjct: 249 KLDVR 253
>gi|125553198|gb|EAY98907.1| hypothetical protein OsI_20862 [Oryza sativa Indica Group]
Length = 319
Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 118/255 (46%), Positives = 159/255 (62%), Gaps = 14/255 (5%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANE--SSDHDPVRVGG 61
+YC DC+R T VV DH+ GDTIC+EC LVL+A +DETSEWR FAN+ S D DP RVG
Sbjct: 10 AYCPDCRRATAVVLDHTTGDTICTECALVLDARYIDETSEWRTFANDGASDDRDPNRVGD 69
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR------SSHPDRNLIQAFKSISA 115
+P L T IA A + + L R P+ L+ AF+ I+
Sbjct: 70 RADPFLPDHVGGTTIAYSAAPPKNASAADAAAPLLTRRRVDVVGPSPENALVAAFRGIAD 129
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKP--LRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M+DRLGLV TI+DRA E++KK+ + RGRN++ + AACL+IACR E PRT KE
Sbjct: 130 MADRLGLVATIRDRAKEVFKKLGEAPKGFPRGRNRDTVYAACLFIACRNEGMPRTYKELA 189
Query: 174 SVA--NGTTKKEIGRAKEFIVKHL-EAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKA 230
SV KKEIGR I KHL + G+++++G + ++DYLRRFCS LG+ +Q V+A
Sbjct: 190 SVTAEGAAAKKEIGRLTTLIKKHLGDQGEGRAMDIGVVRSTDYLRRFCSRLGLGHQDVRA 249
Query: 231 AQEAVQKSED-LDIR 244
A +AV++ E+ LD+R
Sbjct: 250 AGDAVRRLEERLDVR 264
>gi|326500524|dbj|BAK06351.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 316
Score = 213 bits (542), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 120/250 (48%), Positives = 160/250 (64%), Gaps = 11/250 (4%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFA--NESSDHDPVRVGGP 62
YC +C R TEV+ DH+ GDTIC+EC LVL+A+ +DE SEWR FA D DP RVG
Sbjct: 14 YCPECHRATEVMLDHATGDTICTECALVLDAHYIDECSEWRNFADDGGGDDRDPSRVGAS 73
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----SSHPDRNLIQAFKSISAMSD 118
+P L+ LSTVI +T + + +L ++ R S+ + L+ F+ I+ M+D
Sbjct: 74 GDPFLN-AKLSTVIVYSNKSSATGVGANALPRMSVRDADASAASENTLVDGFRGIADMAD 132
Query: 119 RLGLVTTIKDRANEIYKKVEDQK-PLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVAN 177
RLGLV TI+D A E +KK+ D K RGR ++A+ AACLYIACR PRT KE SV
Sbjct: 133 RLGLVATIRDLAKETFKKLYDAKGSPRGRKRDAVYAACLYIACRNLGMPRTYKELASVTA 192
Query: 178 G--TTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
G +KK+IG+ I + L E GQ +++G + ASDYLRRFCS LG+ NQ V+ AQEAV
Sbjct: 193 GGAESKKDIGKMTTHIKRLLGEEDGQVMDIGVVSASDYLRRFCSRLGLGNQEVRDAQEAV 252
Query: 236 QKSED-LDIR 244
+K E+ LD+R
Sbjct: 253 RKVEEGLDVR 262
>gi|156546454|ref|XP_001607291.1| PREDICTED: transcription initiation factor IIB-like [Nasonia
vitripennis]
Length = 315
Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 110/229 (48%), Positives = 149/229 (65%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD ICSECGLV+ +D SEWR F+N+ + DP RVGGP NPLL+G LST
Sbjct: 22 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNDKAGTDPSRVGGPENPLLNGSDLST 81
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I T S + S + + + DR LI AF+ I+AM+DR+ L TI DRAN ++
Sbjct: 82 IIGPGTGAASFDAFGVSKYQNRRTMNSSDRTLINAFREINAMADRINLPRTIVDRANNLF 141
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V D K L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 142 KQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLILKA 200
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNLG+ N +AA +K+ D+DI
Sbjct: 201 LET----SVDL--ITTGDFMSRFCSNLGLPNMVQRAATHIARKAVDIDI 243
>gi|357128609|ref|XP_003565964.1| PREDICTED: transcription initiation factor IIB-2-like [Brachypodium
distachyon]
Length = 338
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/257 (44%), Positives = 154/257 (59%), Gaps = 17/257 (6%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS---DHDPVRVGG 61
YC DC R TEVV DH GDTIC++CG+VL+ + +DE EWR+F ++S+ D DP RVG
Sbjct: 11 YCTDCHRATEVVLDHGTGDTICTDCGMVLDEHYIDEGQEWRVFGDDSAGGEDRDPCRVGS 70
Query: 62 PLNPLLSGGG-LSTVIAKPTAGGSTELLSGSLGK--------LQARSSHPDRNLIQAFKS 112
+P L G G LST I S L PD L+ AF+
Sbjct: 71 AGDPFLRGDGLLSTCIVHSAKSKSRSRSGSDPAAALHLPRMMLDVGGPAPDTALVDAFRG 130
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQK--PLRGRNQEAIVAACLYIACRQENKPRTVK 170
I+ M+DRLGLV TI+D A + +K++E+ K P R+++A+ AACLY+ACR+E PRT K
Sbjct: 131 IADMADRLGLVATIRDSAKQTFKRLEEAKGCPRGARSRDAVYAACLYVACRKEGMPRTYK 190
Query: 171 EFCSVA--NGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAV 228
E SV +K+IG+ I K L E GQ +++G + A+ YLRRFCS LG+ NQ +
Sbjct: 191 ELASVTAQGAAARKDIGKMTTHIKKLLGEEDGQVLDIGVVRATSYLRRFCSILGLGNQQM 250
Query: 229 KAAQEAVQKSE-DLDIR 244
AAQEAV + E +LD+R
Sbjct: 251 LAAQEAVSRLEMELDVR 267
>gi|350417950|ref|XP_003491660.1| PREDICTED: transcription initiation factor IIB-like [Bombus
impatiens]
Length = 315
Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 110/229 (48%), Positives = 147/229 (64%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD ICSECGLV+ +D SEWR F+NE + DP RVGGP NPLL+G LST
Sbjct: 22 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGGPENPLLNGSDLST 81
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I T S + S + + S DR LI AF+ I+ M+DR+ L TI DRAN ++
Sbjct: 82 MIGPGTGAASFDAFGASKYQNRRTMSSSDRALINAFREINGMADRINLPKTIVDRANNLF 141
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V D K L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 142 KQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLILKA 200
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNLG+ N +AA +K+ ++DI
Sbjct: 201 LET----SVDL--ITTGDFMSRFCSNLGLPNMVQRAATHIARKAVEIDI 243
>gi|48102797|ref|XP_395432.1| PREDICTED: transcription initiation factor IIB isoform 1 [Apis
mellifera]
gi|380019249|ref|XP_003693523.1| PREDICTED: transcription initiation factor IIB-like [Apis florea]
Length = 315
Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 110/229 (48%), Positives = 147/229 (64%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD ICSECGLV+ +D SEWR F+NE + DP RVGGP NPLL+G LST
Sbjct: 22 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGGPENPLLNGSDLST 81
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I T S + S + + S DR LI AF+ I+ M+DR+ L TI DRAN ++
Sbjct: 82 MIGPGTGAASFDAFGASKYQNRRTMSSSDRALINAFREINGMADRINLPKTIVDRANNLF 141
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V D K L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 142 KQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLILKA 200
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNLG+ N +AA +K+ ++DI
Sbjct: 201 LET----SVDL--ITTGDFMSRFCSNLGLPNMVQRAATHIARKAVEIDI 243
>gi|195118790|ref|XP_002003919.1| GI20422 [Drosophila mojavensis]
gi|195384910|ref|XP_002051155.1| TfIIB [Drosophila virilis]
gi|193914494|gb|EDW13361.1| GI20422 [Drosophila mojavensis]
gi|194147612|gb|EDW63310.1| TfIIB [Drosophila virilis]
Length = 315
Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 110/231 (47%), Positives = 149/231 (64%), Gaps = 7/231 (3%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
+ ++ D+ AGD ICSECGLV+ +D SEWR F+NE S DP RVGGP NPLLSGG L
Sbjct: 20 SPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDL 79
Query: 73 STVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
ST+I T S + + + S DR+LI AFK IS+M+DR+ L TI DRAN
Sbjct: 80 STIIGPGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINLPKTIVDRANN 139
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K+V D K L+GR+ +A +ACLYIACRQE PRT KE C+V+ +KKEIGR + +
Sbjct: 140 LFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLTL 198
Query: 193 KHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
K LE SV++ I +D++ RFC+NL + N +AA +K+ ++DI
Sbjct: 199 KALET----SVDL--ITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDI 243
>gi|195473679|ref|XP_002089120.1| GE18945 [Drosophila yakuba]
gi|194175221|gb|EDW88832.1| GE18945 [Drosophila yakuba]
Length = 315
Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 110/231 (47%), Positives = 149/231 (64%), Gaps = 7/231 (3%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
+ ++ D+ AGD ICSECGLV+ +D SEWR F+NE S DP RVGGP NPLLSGG L
Sbjct: 20 SPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDL 79
Query: 73 STVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
ST+I T S + + + S DR+LI AFK IS+M+DR+ L TI DRAN
Sbjct: 80 STIIGPGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINLPKTIVDRANN 139
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K+V D K L+GR+ +A +ACLYIACRQE PRT KE C+V+ +KKEIGR + +
Sbjct: 140 LFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLTL 198
Query: 193 KHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
K LE SV++ I +D++ RFC+NL + N +AA +K+ ++DI
Sbjct: 199 KALET----SVDL--ITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDI 243
>gi|17136758|ref|NP_476888.1| transcription factor IIB, isoform A [Drosophila melanogaster]
gi|442627311|ref|NP_001260349.1| transcription factor IIB, isoform B [Drosophila melanogaster]
gi|194761835|ref|XP_001963128.1| GF15790 [Drosophila ananassae]
gi|194859971|ref|XP_001969489.1| GG10133 [Drosophila erecta]
gi|195146744|ref|XP_002014344.1| GL19146 [Drosophila persimilis]
gi|195434140|ref|XP_002065061.1| GK14874 [Drosophila willistoni]
gi|195578215|ref|XP_002078961.1| GD23702 [Drosophila simulans]
gi|135628|sp|P29052.1|TF2B_DROME RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|158538|gb|AAA28929.1| RNA polymerase II transcription factor [Drosophila melanogaster]
gi|158540|gb|AAA28930.1| transcription factor IIB [Drosophila melanogaster]
gi|414282|gb|AAA68626.1| transcription factor IIB [Drosophila melanogaster]
gi|1016268|gb|AAA79093.1| transcription factor IIB [Drosophila melanogaster]
gi|7297699|gb|AAF52951.1| transcription factor IIB, isoform A [Drosophila melanogaster]
gi|41058137|gb|AAR99117.1| RE29729p [Drosophila melanogaster]
gi|51092169|gb|AAT94498.1| LD24035p [Drosophila melanogaster]
gi|190616825|gb|EDV32349.1| GF15790 [Drosophila ananassae]
gi|190661356|gb|EDV58548.1| GG10133 [Drosophila erecta]
gi|194106297|gb|EDW28340.1| GL19146 [Drosophila persimilis]
gi|194161146|gb|EDW76047.1| GK14874 [Drosophila willistoni]
gi|194190970|gb|EDX04546.1| GD23702 [Drosophila simulans]
gi|220953484|gb|ACL89285.1| TfIIB-PA [synthetic construct]
gi|440213669|gb|AGB92884.1| transcription factor IIB, isoform B [Drosophila melanogaster]
Length = 315
Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 110/231 (47%), Positives = 149/231 (64%), Gaps = 7/231 (3%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
+ ++ D+ AGD ICSECGLV+ +D SEWR F+NE S DP RVGGP NPLLSGG L
Sbjct: 20 SPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDL 79
Query: 73 STVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
ST+I T S + + + S DR+LI AFK IS+M+DR+ L TI DRAN
Sbjct: 80 STIIGPGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINLPKTIVDRANN 139
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K+V D K L+GR+ +A +ACLYIACRQE PRT KE C+V+ +KKEIGR + +
Sbjct: 140 LFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLTL 198
Query: 193 KHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
K LE SV++ I +D++ RFC+NL + N +AA +K+ ++DI
Sbjct: 199 KALET----SVDL--ITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDI 243
>gi|195339829|ref|XP_002036519.1| GM18405 [Drosophila sechellia]
gi|194130399|gb|EDW52442.1| GM18405 [Drosophila sechellia]
Length = 315
Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 110/231 (47%), Positives = 149/231 (64%), Gaps = 7/231 (3%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
+ ++ D+ AGD ICSECGLV+ +D SEWR F+NE S DP RVGGP NPLLSGG L
Sbjct: 20 SPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDL 79
Query: 73 STVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
ST+I T S + + + S DR+LI AFK IS+M+DR+ L TI DRAN
Sbjct: 80 STIIGPGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINLPKTIVDRANN 139
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K+V D K L+GR+ +A +ACLYIACRQE PRT KE C+V+ +KKEIGR + +
Sbjct: 140 LFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLTL 198
Query: 193 KHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
K LE SV++ I +D++ RFC+NL + N +AA +K+ ++DI
Sbjct: 199 KALET----SVDL--ITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDI 243
>gi|307197188|gb|EFN78510.1| Transcription initiation factor IIB [Harpegnathos saltator]
Length = 373
Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 110/229 (48%), Positives = 147/229 (64%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD ICSECGLV+ +D SEWR F+NE S DP RVGGP NPLLSG LST
Sbjct: 80 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGSDLST 139
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I T S + + + + S DR L+ AF+ I+ M+DR+ L TI DRAN ++
Sbjct: 140 MIGPGTGAASFDGFGTAKYQNRRTMSSSDRALVNAFREINGMADRINLPKTIVDRANTLF 199
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V D K L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 200 KQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLILKA 258
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNLG+ N +AA +K+ ++DI
Sbjct: 259 LET----SVDL--ITTGDFMSRFCSNLGLPNMVQRAATHIARKAVEIDI 301
>gi|222632446|gb|EEE64578.1| hypothetical protein OsJ_19430 [Oryza sativa Japonica Group]
Length = 287
Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 119/250 (47%), Positives = 156/250 (62%), Gaps = 36/250 (14%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANE--SSDHDPVRVGG 61
+YC DC+R T VV DH+ GDTIC+EC LVL+A +DETSEWR FAN+ S D DP RVG
Sbjct: 10 AYCPDCRRATAVVLDHTTGDTICTECALVLDARYIDETSEWRTFANDGASDDRDPNRVGD 69
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLG 121
+P L P G T + A SS P K I+ M+DRLG
Sbjct: 70 RADPFL-----------PDHVGGTTI---------AYSSAPP-------KGIADMADRLG 102
Query: 122 LVTTIKDRANEIYKKVED--QKPL-RGRNQEAIVAACLYIACRQENKPRTVKEFCSVA-- 176
LV TI+DRA E++KK+ + K L RGRN++A+ AACL+IACR E PRT KE SV
Sbjct: 103 LVATIRDRAKEVFKKLGEAPTKGLPRGRNRDAVYAACLFIACRNEGMPRTYKELASVTAE 162
Query: 177 NGTTKKEIGRAKEFIVKHL-EAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
KKEIGR I KHL + G+++++G + ++DYLRRFCS LG+ +Q V+AA +AV
Sbjct: 163 GAAAKKEIGRLTTLIKKHLGDQGEGRAMDIGVVRSTDYLRRFCSRLGLGHQDVRAAGDAV 222
Query: 236 QKSED-LDIR 244
++ E+ LD+R
Sbjct: 223 RRLEERLDVR 232
>gi|322794062|gb|EFZ17278.1| hypothetical protein SINV_13223 [Solenopsis invicta]
Length = 321
Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 110/229 (48%), Positives = 147/229 (64%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD ICSECGLV+ +D SEWR F+NE S DP RVGGP NPLL+G LST
Sbjct: 17 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGADLST 76
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I T S + + + + S DR L+ AF+ I+ M+DR+ L TI DRAN ++
Sbjct: 77 MIGPGTGAASFDGFGTAKYQNRRTMSSSDRALLNAFREINGMADRINLPKTIVDRANALF 136
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V D K L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 137 KQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLILKA 195
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNLG+ N KAA +K+ ++DI
Sbjct: 196 LET----SVDL--ITTGDFMSRFCSNLGLPNMVQKAATHIARKAVEIDI 238
>gi|383862315|ref|XP_003706629.1| PREDICTED: transcription initiation factor IIB-like [Megachile
rotundata]
Length = 315
Score = 206 bits (525), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 110/229 (48%), Positives = 147/229 (64%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD ICSECGLV+ +D SEWR F+NE + DP RVGGP NPLL+G LST
Sbjct: 22 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGGPENPLLNGSDLST 81
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I T S + S + + S DR LI AF+ I+ M+DR+ L TI DRAN ++
Sbjct: 82 MIGPGTGAASFDAFGVSKYQNRRTMSSSDRALINAFREINGMADRINLPKTIVDRANNLF 141
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V D K L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 142 KQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLILKA 200
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNLG+ N +AA +K+ ++DI
Sbjct: 201 LET----SVDL--ITTGDFMSRFCSNLGLPNMVQRAATHIARKAVEIDI 243
>gi|307179392|gb|EFN67722.1| Transcription initiation factor IIB [Camponotus floridanus]
Length = 315
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 110/229 (48%), Positives = 147/229 (64%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD ICSECGLV+ +D SEWR F+NE S DP RVGGP NPLL+G LST
Sbjct: 22 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGIDPSRVGGPENPLLNGADLST 81
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
VI T S + + + + S DR L+ AF+ I+ M+DR+ L TI DRAN ++
Sbjct: 82 VIGPGTGAASFDGFGTAKYQNRRTLSSSDRALLNAFREINGMADRINLPKTIVDRANTLF 141
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V D K L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 142 KQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLILKA 200
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNLG+ N +AA +K+ ++DI
Sbjct: 201 LET----SVDL--ITTGDFMSRFCSNLGLPNMVQRAATHIARKAVEIDI 243
>gi|289740973|gb|ADD19234.1| transcription initiation factor tFIIB [Glossina morsitans
morsitans]
Length = 314
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 115/231 (49%), Positives = 151/231 (65%), Gaps = 11/231 (4%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD IC ECGLV+ +D SEWR F+NE S DP RVGGP NPLLSGG LST
Sbjct: 21 LIEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLST 80
Query: 75 VIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
+I P G ++ SGS K Q R S DR+LI AFK IS M+DR+ L TI DRAN
Sbjct: 81 IIG-PGTGSASFDASGS-PKYQNRRTMSSSDRSLISAFKEISMMADRINLPKTIIDRANN 138
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K+V D K L+GR+ +A +ACLYIACRQE PRT KE C+V+ +KKEIGR + +
Sbjct: 139 LFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLTL 197
Query: 193 KHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
K LE SV++ I +D++ RFC+NL + N +AA +K+ ++DI
Sbjct: 198 KALET----SVDL--ITTADFMSRFCANLDLPNTVQRAATHIAKKAVEMDI 242
>gi|195051163|ref|XP_001993045.1| GH13607 [Drosophila grimshawi]
gi|193900104|gb|EDV98970.1| GH13607 [Drosophila grimshawi]
Length = 315
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 110/231 (47%), Positives = 148/231 (64%), Gaps = 7/231 (3%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
+ ++ D+ AGD ICSECGLV+ +D SEWR F+NE S DP RVGGP NPLLSGG L
Sbjct: 20 SPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDL 79
Query: 73 STVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
ST+I T S + + + S DR+LI AFK IS M+DR+ L TI DRAN
Sbjct: 80 STIIGPGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISLMADRINLPKTIVDRANN 139
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K+V D K L+GR+ +A +ACLYIACRQE PRT KE C+V+ +KKEIGR + +
Sbjct: 140 LFKQVHDGKNLKGRSNDAKSSACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLTL 198
Query: 193 KHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
K LE SV++ I +D++ RFC+NL + N +AA +K+ ++DI
Sbjct: 199 KALET----SVDL--ITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDI 243
>gi|332376975|gb|AEE63627.1| unknown [Dendroctonus ponderosae]
Length = 315
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 110/242 (45%), Positives = 150/242 (61%), Gaps = 7/242 (2%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGG 61
A+ C ++ D+ AGD ICSECGLV+ +D SEWR F+NE S DP RVGG
Sbjct: 9 ANKVCCSSHPEAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGG 68
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLG 121
P NPLL G L+T+I S + + + + + DR LI AFK I+AM+DR+
Sbjct: 69 PENPLLGGSDLTTMIGPGRGDASYDTFGVARYQNRRTMNSSDRALINAFKEINAMADRIN 128
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L TI DRAN ++K+V D + L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +K
Sbjct: 129 LPRTIVDRANNLFKQVHDGRNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISK 187
Query: 182 KEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDL 241
+EIGR + I+K LE SV++ I D++ RFCSNLG+ N +AA +K+ +L
Sbjct: 188 REIGRCFKLILKALET----SVDL--ITTGDFMSRFCSNLGLPNMVQRAATHIARKAVEL 241
Query: 242 DI 243
DI
Sbjct: 242 DI 243
>gi|189236988|ref|XP_970151.2| PREDICTED: similar to Transcription initiation factor IIB (General
transcription factor TFIIB) [Tribolium castaneum]
Length = 313
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 111/240 (46%), Positives = 150/240 (62%), Gaps = 13/240 (5%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C + ++ D+ AGD ICSECGLV+ +D SEWR F+NE S DP RVGGP NP
Sbjct: 13 CCNSHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENP 72
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLV 123
LL+G L+T+I G S + + Q R S DR LI AF+ I+ M+DR+ L
Sbjct: 73 LLNGSDLTTMIGP----GDASFDSFGVARYQNRKTMSSSDRALINAFREINGMADRINLP 128
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI DRAN ++K+V D + L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +K+E
Sbjct: 129 RTIVDRANNLFKQVHDGRNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKRE 187
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
IGR + I+K LE SV++ I D++ RFCSNLG+ N +AA +K+ +LDI
Sbjct: 188 IGRCFKLILKALET----SVDL--ITTGDFMSRFCSNLGLPNMVQRAATHIARKAVELDI 241
>gi|270006604|gb|EFA03052.1| hypothetical protein TcasGA2_TC010900 [Tribolium castaneum]
Length = 315
Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 111/240 (46%), Positives = 150/240 (62%), Gaps = 11/240 (4%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C + ++ D+ AGD ICSECGLV+ +D SEWR F+NE S DP RVGGP NP
Sbjct: 13 CCNSHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENP 72
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLV 123
LL+G L+T+I G S + + Q R S DR LI AF+ I+ M+DR+ L
Sbjct: 73 LLNGSDLTTMIG--PGRGDASFDSFGVARYQNRKTMSSSDRALINAFREINGMADRINLP 130
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI DRAN ++K+V D + L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +K+E
Sbjct: 131 RTIVDRANNLFKQVHDGRNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKRE 189
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
IGR + I+K LE SV++ I D++ RFCSNLG+ N +AA +K+ +LDI
Sbjct: 190 IGRCFKLILKALET----SVDL--ITTGDFMSRFCSNLGLPNMVQRAATHIARKAVELDI 243
>gi|427777857|gb|JAA54380.1| Putative transcription initiation factor tfiib [Rhipicephalus
pulchellus]
Length = 292
Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 111/231 (48%), Positives = 147/231 (63%), Gaps = 11/231 (4%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC +CGLV+ VD +EWR+F+NE S+ DP RVG NPLL+G L+T
Sbjct: 21 LVEDYRAGDMICPQCGLVVGDRIVDVGTEWRVFSNEKSNSDPARVGASENPLLNGSDLAT 80
Query: 75 VIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
+I K T G K Q R S DR L+ AF+ IS M+DR+ L TI DRAN
Sbjct: 81 MIGKGT--GDASFDESGTAKYQNRKTMSSADRALMNAFREISNMADRINLTKTIVDRANL 138
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K+V D K L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+
Sbjct: 139 LFKQVHDGKTLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-VSKKEIGRCFKLIL 197
Query: 193 KHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
K LE SV++ I D++ RFCSNLG+ + KAA +K+ +LDI
Sbjct: 198 KALET----SVDL--ITTGDFMSRFCSNLGLPSSVQKAATHIARKAVELDI 242
>gi|427787821|gb|JAA59362.1| Putative transcription initiation factor tfiib [Rhipicephalus
pulchellus]
Length = 315
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 111/231 (48%), Positives = 147/231 (63%), Gaps = 11/231 (4%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC +CGLV+ VD +EWR+F+NE S+ DP RVG NPLL+G L+T
Sbjct: 22 LVEDYRAGDMICPQCGLVVGDRIVDVGTEWRVFSNEKSNSDPARVGASENPLLNGSDLAT 81
Query: 75 VIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
+I K T G K Q R S DR L+ AF+ IS M+DR+ L TI DRAN
Sbjct: 82 MIGKGT--GDASFDESGTAKYQNRKTMSSADRALMNAFREISNMADRINLTKTIVDRANL 139
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K+V D K L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+
Sbjct: 140 LFKQVHDGKTLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-VSKKEIGRCFKLIL 198
Query: 193 KHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
K LE SV++ I D++ RFCSNLG+ + KAA +K+ +LDI
Sbjct: 199 KALET----SVDL--ITTGDFMSRFCSNLGLPSSVQKAATHIARKAVELDI 243
>gi|147901135|ref|NP_001081115.1| transcription initiation factor IIB [Xenopus laevis]
gi|135632|sp|P29054.1|TF2B_XENLA RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|65129|emb|CAA44668.1| TFIIB [Xenopus laevis]
gi|50603693|gb|AAH77495.1| Gtf2b-A protein [Xenopus laevis]
Length = 316
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 107/229 (46%), Positives = 144/229 (62%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD ICSECGLV+ +D SEWR F+N+ + DP RVG NPLLSGG L+T
Sbjct: 23 LVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKAAADPSRVGDAQNPLLSGGDLTT 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ MSDR+ L I DR N ++
Sbjct: 83 MIGKGTGSASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITNMSDRINLPRNIIDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE + I D++ RFCSNLG+T Q AA +K+ +LD+
Sbjct: 202 LE------TNVDLITTGDFMSRFCSNLGLTKQVQMAATHIARKAVELDL 244
>gi|346465163|gb|AEO32426.1| hypothetical protein [Amblyomma maculatum]
Length = 268
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/231 (47%), Positives = 147/231 (63%), Gaps = 11/231 (4%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC +CGLV+ VD +EWR+F NE S++DP RVG NPLL+G L+T
Sbjct: 22 LVEDYRAGDMICPQCGLVVGDRIVDVGTEWRVFPNEKSNNDPARVGAAENPLLNGSDLAT 81
Query: 75 VIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
+I K T G K Q R S DR L+ AF+ IS M+DR+ L TI DR+N
Sbjct: 82 MIGKGT--GDASFDESGTAKYQNRKTMSSADRALLNAFREISNMADRINLTKTIVDRSNL 139
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K+V D K L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+
Sbjct: 140 LFKQVHDGKTLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-VSKKEIGRCFKLIL 198
Query: 193 KHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
K LE SV++ I D++ RFCSNLG+ + KAA +K+ +LDI
Sbjct: 199 KALET----SVDL--ITTGDFMSRFCSNLGLPSSVQKAATHIARKAVELDI 243
>gi|357624850|gb|EHJ75466.1| hypothetical protein KGM_17256 [Danaus plexippus]
Length = 285
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 111/221 (50%), Positives = 142/221 (64%), Gaps = 11/221 (4%)
Query: 25 ICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGS 84
ICSECGLV+ +D SEWR F+NE S DP RVGGP NPLLSGG LST+I G
Sbjct: 2 ICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLSTIIG--PGRGD 59
Query: 85 TELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKP 142
S + K Q R S DR LI AF+ I+ M+DR+ L TI DRAN ++K+V D K
Sbjct: 60 ASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIVDRANNLFKQVHDGKN 119
Query: 143 LRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQS 202
L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K LE S
Sbjct: 120 LKGRANDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLILKALET----S 174
Query: 203 VEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
V++ I +D++ RFC+NLG+ N +AA +K+ +LDI
Sbjct: 175 VDL--ITTADFMSRFCANLGLPNSVQRAATHIARKAGELDI 213
>gi|312379141|gb|EFR25512.1| hypothetical protein AND_09086 [Anopheles darlingi]
Length = 338
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 109/238 (45%), Positives = 148/238 (62%), Gaps = 7/238 (2%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C + ++ D+ AGD ICSECGLV+ +D SEWR F+NE + DP RVGGP NP
Sbjct: 36 CCNSHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGGPENP 95
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTT 125
LLSGG LST+I T S + + + + S DR LI AFK IS M+DR+ L T
Sbjct: 96 LLSGGDLSTMIGPGTGPASFDAFGTAKYQNRRTMSSSDRALIAAFKEISTMADRINLPKT 155
Query: 126 IKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIG 185
I DRAN ++K+V D K L+GR+ +A +ACLYIACRQE PRT KE C+V+ +KKEIG
Sbjct: 156 ITDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIG 214
Query: 186 RAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
R + +K L SV++ I +D++ RFC+NL + N +AA +K+ ++DI
Sbjct: 215 RCFKLTLKAL----ATSVDL--ITTADFMSRFCANLDLPNVVQRAATHIARKAVEMDI 266
>gi|442754741|gb|JAA69530.1| Putative transcription initiation factor tfiib [Ixodes ricinus]
Length = 315
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 109/231 (47%), Positives = 147/231 (63%), Gaps = 11/231 (4%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC +CGLV+ VD +EWR+F NE S++DP RVG NPLL+G L+T
Sbjct: 22 LVEDYRAGDMICPQCGLVVGDRIVDVGTEWRVFPNEKSNNDPARVGASENPLLNGSDLAT 81
Query: 75 VIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
+I K T G K Q R S DR L+ AF+ IS M+DR+ L TI DR+N
Sbjct: 82 MIGKGT--GDASFDESGTAKYQNRKTMSSSDRALVNAFREISNMADRINLTKTIVDRSNL 139
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K+V D K L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+
Sbjct: 140 LFKQVHDGKTLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-VSKKEIGRCFKLIL 198
Query: 193 KHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
K LE SV++ I D++ RFCSNLG+ + KAA +K+ +LD+
Sbjct: 199 KALET----SVDL--ITTGDFMSRFCSNLGLPSSVQKAATHIARKAVELDV 243
>gi|242013902|ref|XP_002427639.1| transcription initiation factor iib, putative [Pediculus humanus
corporis]
gi|212512060|gb|EEB14901.1| transcription initiation factor iib, putative [Pediculus humanus
corporis]
Length = 313
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/229 (48%), Positives = 146/229 (63%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD ICSECGLV+ +D SEWR F+NE + DP RVGGP NPLL+G L T
Sbjct: 20 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKAGTDPSRVGGPENPLLNGSDLCT 79
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I S + L S + + S DR LI AF+ I+AM+DR+ L TI DRAN ++
Sbjct: 80 MIGPGRGDASFDGLGVSKYQNRRTMSSSDRALINAFREINAMADRINLPKTIVDRANNLF 139
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V D K L+GR +AI +A LYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 140 KQVHDGKNLKGRANDAIASAALYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLILKA 198
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNLG+ N +AA +K+ +LDI
Sbjct: 199 LET----SVDL--ITTGDFMSRFCSNLGLPNMVQRAATHIARKAVELDI 241
>gi|170041267|ref|XP_001848391.1| transcription initiation factor TFIIB [Culex quinquefasciatus]
gi|167864865|gb|EDS28248.1| transcription initiation factor TFIIB [Culex quinquefasciatus]
Length = 316
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 108/229 (47%), Positives = 146/229 (63%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD ICSECGLV+ +D SEWR F+NE + DP RVGGP NPLLSGG LST
Sbjct: 23 LIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGGPENPLLSGGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I T S + + + + S DR LI AFK IS M+DR+ L TI DRAN ++
Sbjct: 83 MIGPGTGPASFDAFGTAKYQNRRTMSSSDRALIAAFKEISTMADRINLPKTIVDRANNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V D K L+GR+ +A +ACLYIACRQE PRT KE C+V+ +KKEIGR + +K
Sbjct: 143 KQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLTLKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
L SV++ I +D++ RFC+NL + N +AA +K+ ++DI
Sbjct: 202 L----ATSVDL--ITTADFMSRFCANLDLPNTVQRAATHIARKAVEMDI 244
>gi|158288246|ref|XP_310128.4| AGAP009558-PA [Anopheles gambiae str. PEST]
gi|157019157|gb|EAA05904.4| AGAP009558-PA [Anopheles gambiae str. PEST]
Length = 316
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 108/229 (47%), Positives = 146/229 (63%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD ICSECGLV+ +D SEWR F+NE + DP RVGGP NPLLSGG LST
Sbjct: 23 LIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGGPENPLLSGGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I T S + + + + S DR LI AFK IS M+DR+ L TI DRAN ++
Sbjct: 83 MIGPGTGPASFDAFGTAKYQNRRTMSSSDRALIAAFKEISTMADRINLPKTITDRANNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V D K L+GR+ +A +ACLYIACRQE PRT KE C+V+ +KKEIGR + +K
Sbjct: 143 KQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLTLKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
L SV++ I +D++ RFC+NL + N +AA +K+ ++DI
Sbjct: 202 L----ATSVDL--ITTADFMSRFCANLDLPNVVQRAATHIARKAVEMDI 244
>gi|157109648|ref|XP_001650764.1| transcription initiation factor TFIIB [Aedes aegypti]
gi|108878948|gb|EAT43173.1| AAEL005368-PA [Aedes aegypti]
Length = 316
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 108/229 (47%), Positives = 146/229 (63%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD ICSECGLV+ +D SEWR F+NE + DP RVGGP NPLLSGG LST
Sbjct: 23 LIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGGPENPLLSGGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I T S + + + + S DR LI AFK IS M+DR+ L TI DRAN ++
Sbjct: 83 MIGPGTGPASFDAFGTAKYQNRRTMSSSDRALIAAFKEISTMADRINLPKTIVDRANNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V D K L+GR+ +A +ACLYIACRQE PRT KE C+V+ +KKEIGR + +K
Sbjct: 143 KQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLTLKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
L SV++ I +D++ RFC+NL + N +AA +K+ ++DI
Sbjct: 202 L----ATSVDL--ITTADFMSRFCANLDLPNTVQRAATHIARKAVEMDI 244
>gi|354801973|gb|AER39748.1| transcription initiation factor IIB [Cyprinus carpio]
Length = 316
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 108/229 (47%), Positives = 146/229 (63%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F NE + +DP RVG NPLL+GG LST
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFTNEKATNDPSRVGDAQNPLLNGGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I+K T S + S + + S DR ++ AFK I+ MSDR+ L I DR N ++
Sbjct: 83 MISKGTGAASFDEFGNSKYQNRRTMSSADRAMLNAFKEITTMSDRINLPRNIIDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNLG+ Q AA +K+ +LD+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNLGLPKQVQIAATYIARKAVELDL 244
>gi|157109646|ref|XP_001650763.1| transcription initiation factor TFIIB [Aedes aegypti]
gi|108878947|gb|EAT43172.1| AAEL005368-PB [Aedes aegypti]
Length = 318
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 108/229 (47%), Positives = 146/229 (63%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD ICSECGLV+ +D SEWR F+NE + DP RVGGP NPLLSGG LST
Sbjct: 23 LIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGGPENPLLSGGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I T S + + + + S DR LI AFK IS M+DR+ L TI DRAN ++
Sbjct: 83 MIGPGTGPASFDAFGTAKYQNRRTMSSSDRALIAAFKEISTMADRINLPKTIVDRANNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V D K L+GR+ +A +ACLYIACRQE PRT KE C+V+ +KKEIGR + +K
Sbjct: 143 KQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLTLKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
L SV++ I +D++ RFC+NL + N +AA +K+ ++DI
Sbjct: 202 L----ATSVDL--ITTADFMSRFCANLDLPNTVQRAATHIARKAVEMDI 244
>gi|62858845|ref|NP_001016277.1| general transcription factor 2B [Xenopus (Silurana) tropicalis]
gi|89266709|emb|CAJ83945.1| general transcription factor IIBgeneral transcription factor IIB
[Xenopus (Silurana) tropicalis]
Length = 316
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 144/229 (62%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD ICSECGLV+ +D SEWR F+N+ + DP RVG NPLLSGG L+T
Sbjct: 23 LVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKAAKDPSRVGDAQNPLLSGGDLTT 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + + + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNNKYQNRRTMSSSDRAMMNAFKEITNMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE + I D++ RFCSNLG+T Q AA +K+ +LD+
Sbjct: 202 LE------TNVDLITTGDFMSRFCSNLGLTKQVQMAATHIARKAVELDL 244
>gi|41054405|ref|NP_955991.1| transcription initiation factor IIB [Danio rerio]
gi|33585882|gb|AAH55569.1| General transcription factor IIB [Danio rerio]
Length = 316
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 106/229 (46%), Positives = 146/229 (63%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+NE + DP RVG NPLL+GG L+T
Sbjct: 23 LVEDYRAGDMICPECGLVVRDRVIDVGSEWRTFSNEKATKDPSRVGDAQNPLLNGGDLTT 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I+K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MISKGTGAASFDEFGNSKYQNRRTMSSSDRAMLNAFKEITTMADRINLPRNIIDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNLG+ Q AA +K+ +LD+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNLGLPKQVQMAATYIARKAVELDL 244
>gi|156372338|ref|XP_001628995.1| predicted protein [Nematostella vectensis]
gi|156215985|gb|EDO36932.1| predicted protein [Nematostella vectensis]
Length = 310
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 110/231 (47%), Positives = 152/231 (65%), Gaps = 11/231 (4%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD ICSECGLV+ VD SEWR F+NE + DP RVG NPLLSGG LST
Sbjct: 17 LIEDYRAGDMICSECGLVVGDRVVDVGSEWRTFSNEKATSDPSRVGAAQNPLLSGGDLST 76
Query: 75 VIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
+I KP+ G + + G +RS S DR+L+ AF+ IS M+DR+ L I DRAN+
Sbjct: 77 LIEKPSGGNAD--IEGFARTHNSRSGMSGADRSLMNAFREISIMADRINLPRKIVDRANQ 134
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K+V +QK L+GR+ + I +ACLYIACRQE PRT+KE C++ +KKEIGR + I+
Sbjct: 135 LFKQVHEQKSLKGRSNDTIASACLYIACRQEGVPRTLKEICAIGK-ISKKEIGRCFKLIL 193
Query: 193 KHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
KHLE SV++ I + D++ RFCSNL + KAA +++ +LD+
Sbjct: 194 KHLET----SVDL--ITSGDFMSRFCSNLTLPLSVQKAATYIARRAVELDL 238
>gi|213515448|ref|NP_001134769.1| Transcription initiation factor IIB [Salmo salar]
gi|209735868|gb|ACI68803.1| Transcription initiation factor IIB [Salmo salar]
gi|303661887|gb|ADM16053.1| Transcription initiation factor IIB [Salmo salar]
Length = 318
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 107/229 (46%), Positives = 144/229 (62%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F NE + DP RVG NPLL+GG LST
Sbjct: 25 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFTNEKATQDPSRVGDAQNPLLNGGDLST 84
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I+K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 85 MISKGTGAASFDEFGNSKYQNRRTMSSSDRAMLNAFKEITTMADRINLPRNIIDRTNNLF 144
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 145 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 203
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNLG+ Q AA +K+ +LD+
Sbjct: 204 LET----SVDL--ITTGDFMSRFCSNLGLPKQVQMAATYIARKAVELDL 246
>gi|321461615|gb|EFX72645.1| hypothetical protein DAPPUDRAFT_325996 [Daphnia pulex]
Length = 318
Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 111/231 (48%), Positives = 148/231 (64%), Gaps = 11/231 (4%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD ICSECGLV+ +D SEWR F+NE ++ DP RVGG N LL+G LST
Sbjct: 23 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKANADPSRVGGSENALLNGTDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
+I T GS + K Q R S DR L+ AFK IS M+DR+ L TI DRAN
Sbjct: 83 MIGPGT--GSASFDEHGVAKYQNRRTMSSSDRALVNAFKEISNMADRINLPRTIVDRANN 140
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K+V D K L+GR+ +AI +ACLYI+CRQE PRT KE C+V+ +KKEIGR + I+
Sbjct: 141 LFKQVHDGKNLKGRSNDAIASACLYISCRQEGVPRTFKEICAVSK-ISKKEIGRCFKLIL 199
Query: 193 KHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
K LE SV++ I +D++ RFCSNLG+ +AA +K+ +LDI
Sbjct: 200 KALET----SVDI--ITTADFMSRFCSNLGLPTMVQRAASHIARKAVELDI 244
>gi|449268065|gb|EMC78935.1| Transcription initiation factor IIB [Columba livia]
Length = 318
Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 107/229 (46%), Positives = 145/229 (63%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD ICSECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 25 LVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPLLSDGDLST 84
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 85 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITNMADRINLPRNIVDRTNNLF 144
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 145 KQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 203
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNLG+ Q AA +K+ +LD+
Sbjct: 204 LET----SVDL--ITTGDFMSRFCSNLGLPKQVQMAATHIARKAVELDL 246
>gi|224057480|ref|XP_002195495.1| PREDICTED: transcription initiation factor IIB isoform 1
[Taeniopygia guttata]
Length = 316
Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 107/229 (46%), Positives = 145/229 (63%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD ICSECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 23 LVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPLLSDGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITNMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNLG+ Q AA +K+ +LD+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNLGLPKQVQMAATHIARKAVELDL 244
>gi|363736712|ref|XP_422356.3| PREDICTED: transcription initiation factor IIB [Gallus gallus]
Length = 316
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 107/229 (46%), Positives = 145/229 (63%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD ICSECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 23 LVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPLLSDGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITNMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNLG+ Q AA +K+ +LD+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNLGLPKQVQMAATHIARKAVELDL 244
>gi|432911722|ref|XP_004078691.1| PREDICTED: transcription initiation factor IIB-like [Oryzias
latipes]
Length = 318
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 107/229 (46%), Positives = 144/229 (62%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+NE + DP RVG NPLL+GG L+T
Sbjct: 25 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNEKAQKDPSRVGDAQNPLLNGGDLTT 84
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK IS M+DR+ L I DR N ++
Sbjct: 85 MIGKGTGSASFDEFGNSKYQNRRTMSSSDRAMLHAFKEISTMADRINLPRNIVDRTNNLF 144
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 145 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 203
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNLG+ Q AA +K+ +LD+
Sbjct: 204 LET----SVDL--ITTGDFMSRFCSNLGLPKQVQMAATFIARKAVELDL 246
>gi|391338244|ref|XP_003743470.1| PREDICTED: transcription initiation factor IIB-like [Metaseiulus
occidentalis]
Length = 314
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 107/239 (44%), Positives = 148/239 (61%), Gaps = 8/239 (3%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
+C D ++ D+ AGD IC +CGLV+ VD +EWR+F NE S +DP RVG N
Sbjct: 12 FCPDHPE-ANLIEDYRAGDMICPQCGLVVGDRIVDVGTEWRVFQNEKSSNDPTRVGAAEN 70
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G LST+I + T S + + + S DR LI AF+ ISAM DR+ L
Sbjct: 71 PLLNGSDLSTIIGRGTGDASFDESGNAKYANRKTMSSSDRALIGAFREISAMGDRINLTR 130
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
I DR+N ++K+V D + L+GR+ +AI +ACLYIACRQE+ PRT KE C+V+ +KKEI
Sbjct: 131 NIIDRSNALFKQVHDGRSLKGRSNDAIASACLYIACRQESVPRTFKEICAVSK-VSKKEI 189
Query: 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
GR + I+K LE SVE+ I D++ RFCSNL ++ KAA +K+ ++DI
Sbjct: 190 GRCFKLILKALET----SVEL--ITTGDFMSRFCSNLALSTAVQKAATHIARKAVEMDI 242
>gi|326925120|ref|XP_003208769.1| PREDICTED: transcription initiation factor IIB-like [Meleagris
gallopavo]
Length = 353
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 107/229 (46%), Positives = 145/229 (63%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD ICSECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 60 LVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPLLSDGDLST 119
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 120 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITNMADRINLPRNIVDRTNNLF 179
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 180 KQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 238
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNLG+ Q AA +K+ +LD+
Sbjct: 239 LET----SVDL--ITTGDFMSRFCSNLGLPKQVQMAATHIARKAVELDL 281
>gi|348500548|ref|XP_003437835.1| PREDICTED: transcription initiation factor IIB-like [Oreochromis
niloticus]
gi|50844459|gb|AAT84346.1| general transcription factor II B [Oreochromis mossambicus]
Length = 318
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 107/229 (46%), Positives = 145/229 (63%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+NE + DP RVG NPLL+GG L+T
Sbjct: 25 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNEKALKDPSRVGDAQNPLLNGGDLTT 84
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I+K T S + S + + S DR ++ AFK IS M+DR+ L I DR N ++
Sbjct: 85 MISKGTGAASFDEFGNSKYQNRRTMSSSDRAMLNAFKEISTMADRINLPRNIVDRTNNLF 144
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 145 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 203
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNLG+ Q AA +K+ +LD+
Sbjct: 204 LET----SVDL--ITTGDFMSRFCSNLGLPKQVQMAATFIARKAVELDL 246
>gi|327270757|ref|XP_003220155.1| PREDICTED: transcription initiation factor IIB-like [Anolis
carolinensis]
Length = 316
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 145/229 (63%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G L+T
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPLLSDGDLTT 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I++M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEIASMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNLG+ Q AA +K+ +LD+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNLGLPKQVQMAATHIARKAVELDL 244
>gi|47215967|emb|CAF96369.1| unnamed protein product [Tetraodon nigroviridis]
Length = 344
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 107/231 (46%), Positives = 145/231 (62%), Gaps = 7/231 (3%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
+ +V D+ AGD IC ECGLV+ +D SEWR F+NE + DP RVG NPLL+GG L
Sbjct: 49 STLVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNEKALKDPSRVGDAQNPLLNGGDL 108
Query: 73 STVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
+T+I K T S + S + + S DR ++ AFK IS M+DR+ L I DR N
Sbjct: 109 TTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMLNAFKEISTMADRINLPRNIIDRTNN 168
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+
Sbjct: 169 LFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLIL 227
Query: 193 KHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
K LE SV++ I D++ RFCSNLG+ Q AA +K+ +LD+
Sbjct: 228 KALET----SVDL--ITTGDFMSRFCSNLGLPKQVQMAATFIARKAVELDL 272
>gi|260797487|ref|XP_002593734.1| hypothetical protein BRAFLDRAFT_117242 [Branchiostoma floridae]
gi|229278962|gb|EEN49745.1| hypothetical protein BRAFLDRAFT_117242 [Branchiostoma floridae]
Length = 319
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 110/230 (47%), Positives = 150/230 (65%), Gaps = 9/230 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD ICSECGLV+ VD +EWR F+NE SD D RVG NPLLSGG LST
Sbjct: 26 LIEDYRAGDQICSECGLVVGDRVVDVGTEWRTFSNEKSDKDRSRVGAAENPLLSGGDLST 85
Query: 75 VIAKPT-AGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEI 133
+I++P+ + G E S ++ SS DR L+ AF+ I+ M+DR+ L I DR +
Sbjct: 86 MISRPSGSAGFNEDGSAKYHNRRSMSSS-DRALVNAFREITGMADRINLPRNIVDRTQML 144
Query: 134 YKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
+K+V DQK L+GR+ +AI AACLYIACRQE PRT KE C+++ +KKEIGR + I+K
Sbjct: 145 FKQVNDQKSLKGRSNDAISAACLYIACRQEGVPRTFKEICAISR-VSKKEIGRVFKLILK 203
Query: 194 HLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SVE+ I D++ RFCSNL + +Q +AA +K+ +LD+
Sbjct: 204 ALET----SVEL--ITTGDFMSRFCSNLNLPSQVQRAATHIARKAVELDL 247
>gi|410924600|ref|XP_003975769.1| PREDICTED: transcription initiation factor IIB-like [Takifugu
rubripes]
Length = 318
Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 106/229 (46%), Positives = 144/229 (62%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC +CGLV+ +D SEWR F+NE + DP RVG NPLL+GG L+T
Sbjct: 25 LVEDYRAGDMICPDCGLVVGDRVIDVGSEWRTFSNEKALKDPSRVGDAQNPLLNGGDLTT 84
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK IS M+DR+ L I DR N ++
Sbjct: 85 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMLNAFKEISTMADRINLPRNIIDRTNNLF 144
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 145 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 203
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNLG+ Q AA +K+ +LD+
Sbjct: 204 LET----SVDL--ITTGDFMSRFCSNLGLPKQVQMAATFIARKAVELDL 246
>gi|387019195|gb|AFJ51715.1| Transcription initiation factor IIB-like [Crotalus adamanteus]
Length = 316
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 105/231 (45%), Positives = 146/231 (63%), Gaps = 7/231 (3%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
+ +V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G L
Sbjct: 21 STLVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPLLSDGDL 80
Query: 73 STVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
+T+I K T S + S + + S DR ++ AFK I++M+DR+ L I DR N
Sbjct: 81 TTMIGKGTGAASFDEFGNSKYQNRRTMSSFDRAMMNAFKEIASMADRINLPRNIVDRTNN 140
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K+V +QK L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+
Sbjct: 141 LFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLIL 199
Query: 193 KHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
K LE SV++ I D++ RFCSNLG+ Q AA +K+ +LD+
Sbjct: 200 KALET----SVDL--ITTGDFMSRFCSNLGLPKQVQMAATHIARKAVELDL 244
>gi|405962690|gb|EKC28341.1| Transcription initiation factor IIB [Crassostrea gigas]
Length = 319
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 112/233 (48%), Positives = 147/233 (63%), Gaps = 13/233 (5%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ VD +EWR F+N+ SD DP RVG NPLL GG LST
Sbjct: 24 LVEDYHAGDMICPECGLVVGDRVVDVGTEWRTFSNDKSDKDPSRVGASENPLLEGGDLST 83
Query: 75 VIAKPTAGGSTELLSGSLGKLQARS----SHPDRNLIQAFKSISAMSDRLGLVTTIKDRA 130
+IA T G +E + GK R+ + DR LI AF+ I M DRL L I DRA
Sbjct: 84 MIA--TGVGGSEGVLDEHGKPMYRNRRTLNSSDRALINAFREIGQMGDRLNLPRMIADRA 141
Query: 131 NEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEF 190
N ++K+V + K L+GR+ +AI +AC+YIACRQE PRT KE C+V+ +KKEIGR +
Sbjct: 142 NTLFKQVHEGKALKGRSNDAIASACMYIACRQEGVPRTFKEICAVSK-ISKKEIGRVFKL 200
Query: 191 IVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
I+K+LE +VE+ I D++ RFCSNL + N KAA +K+ DLD+
Sbjct: 201 ILKNLET----NVEL--ITTGDFMSRFCSNLSLPNSVQKAATHIARKAVDLDL 247
>gi|431897056|gb|ELK06320.1| Transcription initiation factor IIB [Pteropus alecto]
Length = 316
Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 106/229 (46%), Positives = 143/229 (62%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS GGLST
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGGLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNL + Q AA +K+ +LD+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>gi|126305849|ref|XP_001364333.1| PREDICTED: transcription initiation factor IIB-like [Monodelphis
domestica]
Length = 316
Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 143/229 (62%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G L+T
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLTT 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNLG+ Q AA +K+ +LD+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNLGLPKQVQMAATHIARKAVELDL 244
>gi|395530416|ref|XP_003767291.1| PREDICTED: transcription initiation factor IIB, partial
[Sarcophilus harrisii]
Length = 343
Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 142/229 (62%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G L+T
Sbjct: 50 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLTT 109
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 110 MIGKGTGAASFDEFGNSKYQNHRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 169
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 170 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 228
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNLG+ Q AA +K+ +LD+
Sbjct: 229 LET----SVDL--ITTGDFMSRFCSNLGLPKQVQMAATHIARKAVELDL 271
>gi|212721546|ref|NP_001131844.1| uncharacterized protein LOC100193219 [Zea mays]
gi|194692694|gb|ACF80431.1| unknown [Zea mays]
gi|414886464|tpg|DAA62478.1| TPA: hypothetical protein ZEAMMB73_928076 [Zea mays]
Length = 136
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 92/136 (67%), Positives = 110/136 (80%), Gaps = 1/136 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+DS+C DCK+ TEV FDHSAGD +C+ECGLVLEA+SVDETSEWR FANES+D+DPVRVG
Sbjct: 1 MSDSFCPDCKKHTEVAFDHSAGDMVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP G + LS SLG+ Q R S+PDR+LI AF++I+ M+DRL
Sbjct: 61 GPTNPLLTDGGLSTVIAKPN-GAQGDFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRL 119
Query: 121 GLVTTIKDRANEIYKK 136
GLV TIK R I +
Sbjct: 120 GLVATIKTREKVIQNR 135
>gi|148224786|ref|NP_001088125.1| general transcription factor 2B [Xenopus laevis]
gi|52430498|gb|AAH82943.1| LOC494830 protein [Xenopus laevis]
Length = 316
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/229 (46%), Positives = 143/229 (62%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD ICSE GLV+ VD SEWR F+N+ + DP RVG NPLLSGG L+T
Sbjct: 23 LVEDYRAGDMICSESGLVVGDRVVDVGSEWRTFSNDKAAKDPSRVGDAQNPLLSGGDLTT 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRAMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE + I D++ RFCSNLG+T Q AA +K+ +LD+
Sbjct: 202 LE------TNVDLITTGDFMSRFCSNLGLTKQVQMAATHIARKAVELDL 244
>gi|74228747|dbj|BAE21864.1| unnamed protein product [Mus musculus]
Length = 316
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 142/229 (62%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 IIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNL + Q AA +K+ +LD+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>gi|351705451|gb|EHB08370.1| Transcription initiation factor IIB, partial [Heterocephalus
glaber]
Length = 309
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 142/229 (62%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 16 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDAQNPLLSNGDLST 75
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 76 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 135
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 136 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 194
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNL + Q AA +K+ +LD+
Sbjct: 195 LET----SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 237
>gi|354495851|ref|XP_003510042.1| PREDICTED: transcription initiation factor IIB-like [Cricetulus
griseus]
Length = 477
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 142/229 (62%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 184 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 243
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 244 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 303
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 304 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 362
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNL + Q AA +K+ +LD+
Sbjct: 363 LET----SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 405
>gi|410967657|ref|XP_003990334.1| PREDICTED: transcription initiation factor IIB [Felis catus]
Length = 316
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 142/229 (62%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNL + Q AA +K+ +LD+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>gi|119593566|gb|EAW73160.1| general transcription factor IIB, isoform CRA_b [Homo sapiens]
Length = 373
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 142/229 (62%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 80 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 139
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 140 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 199
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 200 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 258
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNL + Q AA +K+ +LD+
Sbjct: 259 LET----SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 301
>gi|355693876|gb|AER99482.1| proteinral transcription factor IIB [Mustela putorius furo]
Length = 289
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 142/229 (62%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 31 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 90
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 91 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 150
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 151 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 209
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNL + Q AA +K+ +LD+
Sbjct: 210 LET----SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 252
>gi|4504193|ref|NP_001505.1| transcription initiation factor IIB [Homo sapiens]
gi|197102490|ref|NP_001126175.1| transcription initiation factor IIB [Pongo abelii]
gi|388453639|ref|NP_001253799.1| transcription initiation factor IIB [Macaca mulatta]
gi|57088257|ref|XP_537085.1| PREDICTED: transcription initiation factor IIB isoform 1 [Canis
lupus familiaris]
gi|296208436|ref|XP_002751091.1| PREDICTED: transcription initiation factor IIB [Callithrix jacchus]
gi|301764575|ref|XP_002917714.1| PREDICTED: transcription initiation factor IIB-like [Ailuropoda
melanoleuca]
gi|332809462|ref|XP_001147170.2| PREDICTED: transcription initiation factor IIB [Pan troglodytes]
gi|335287423|ref|XP_001929441.3| PREDICTED: transcription initiation factor IIB [Sus scrofa]
gi|344278936|ref|XP_003411247.1| PREDICTED: transcription initiation factor IIB [Loxodonta africana]
gi|395821801|ref|XP_003784220.1| PREDICTED: transcription initiation factor IIB [Otolemur garnettii]
gi|397473904|ref|XP_003808436.1| PREDICTED: transcription initiation factor IIB [Pan paniscus]
gi|402855161|ref|XP_003892206.1| PREDICTED: transcription initiation factor IIB [Papio anubis]
gi|403305513|ref|XP_003943308.1| PREDICTED: transcription initiation factor IIB [Saimiri boliviensis
boliviensis]
gi|426215922|ref|XP_004002218.1| PREDICTED: transcription initiation factor IIB [Ovis aries]
gi|426330265|ref|XP_004026141.1| PREDICTED: transcription initiation factor IIB [Gorilla gorilla
gorilla]
gi|135629|sp|Q00403.1|TF2B_HUMAN RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB; AltName:
Full=S300-II
gi|71153595|sp|Q5R886.1|TF2B_PONAB RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|75075384|sp|Q4R3J5.1|TF2B_MACFA RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|37058|emb|CAA41958.1| IIB protein [Homo sapiens]
gi|339490|gb|AAA61149.1| transcription factor [Homo sapiens]
gi|18088837|gb|AAH20597.1| General transcription factor IIB [Homo sapiens]
gi|55730606|emb|CAH92024.1| hypothetical protein [Pongo abelii]
gi|67971960|dbj|BAE02322.1| unnamed protein product [Macaca fascicularis]
gi|158260667|dbj|BAF82511.1| unnamed protein product [Homo sapiens]
gi|167773977|gb|ABZ92423.1| general transcription factor IIB [synthetic construct]
gi|197692293|dbj|BAG70110.1| general transcription factor IIB [Homo sapiens]
gi|296489281|tpg|DAA31394.1| TPA: transcription initiation factor IIB [Bos taurus]
gi|306921489|dbj|BAJ17824.1| general transcription factor IIB [synthetic construct]
gi|349605874|gb|AEQ00964.1| Transcription initiation factor IIB-like protein [Equus caballus]
gi|380812116|gb|AFE77933.1| transcription initiation factor IIB [Macaca mulatta]
gi|383417803|gb|AFH32115.1| transcription initiation factor IIB [Macaca mulatta]
gi|384946652|gb|AFI36931.1| transcription initiation factor IIB [Macaca mulatta]
gi|410208354|gb|JAA01396.1| general transcription factor IIB [Pan troglodytes]
gi|410257026|gb|JAA16480.1| general transcription factor IIB [Pan troglodytes]
gi|410304078|gb|JAA30639.1| general transcription factor IIB [Pan troglodytes]
gi|410349827|gb|JAA41517.1| general transcription factor IIB [Pan troglodytes]
gi|228040|prf||1715332A transcription initiation factor IIB
Length = 316
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 142/229 (62%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNL + Q AA +K+ +LD+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>gi|13591965|ref|NP_112303.1| transcription initiation factor IIB [Rattus norvegicus]
gi|21704076|ref|NP_663521.1| transcription initiation factor IIB [Mus musculus]
gi|51703316|sp|P62916.1|TF2B_RAT RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB; AltName:
Full=RNA polymerase II alpha initiation factor
gi|51703324|sp|P62915.1|TF2B_MOUSE RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB; AltName:
Full=RNA polymerase II alpha initiation factor
gi|55624|emb|CAA46766.1| alpha initiation factor [Rattus norvegicus]
gi|16741677|gb|AAH16637.1| General transcription factor IIB [Mus musculus]
gi|55391522|gb|AAH85345.1| General transcription factor IIB [Rattus norvegicus]
gi|74144729|dbj|BAE27344.1| unnamed protein product [Mus musculus]
gi|74147252|dbj|BAE27522.1| unnamed protein product [Mus musculus]
gi|74195918|dbj|BAE30517.1| unnamed protein product [Mus musculus]
gi|74211309|dbj|BAE26416.1| unnamed protein product [Mus musculus]
gi|74221596|dbj|BAE21509.1| unnamed protein product [Mus musculus]
gi|74226680|dbj|BAE26991.1| unnamed protein product [Mus musculus]
gi|148680097|gb|EDL12044.1| general transcription factor IIB [Mus musculus]
gi|149026117|gb|EDL82360.1| general transcription factor IIB [Rattus norvegicus]
Length = 316
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 142/229 (62%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNL + Q AA +K+ +LD+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>gi|254934|gb|AAB23144.1| S300-II [Homo sapiens]
Length = 311
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 142/229 (62%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 18 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 77
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 78 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 137
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 138 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 196
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNL + Q AA +K+ +LD+
Sbjct: 197 LET----SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 239
>gi|114051409|ref|NP_001039607.1| transcription initiation factor IIB [Bos taurus]
gi|122143863|sp|Q2KIN8.1|TF2B_BOVIN RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|86438483|gb|AAI12571.1| General transcription factor IIB [Bos taurus]
Length = 316
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 142/229 (62%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNL + Q AA +K+ +LD+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>gi|345329183|ref|XP_001508212.2| PREDICTED: transcription initiation factor IIB-like, partial
[Ornithorhynchus anatinus]
Length = 310
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 104/229 (45%), Positives = 143/229 (62%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G L+T
Sbjct: 17 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPLLSDGDLTT 76
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 77 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAIMNAFKEITNMADRINLPRNIVDRTNTLF 136
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 137 KQVYEQKSLKGRCNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 195
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNLG+ Q AA +K+ ++D+
Sbjct: 196 LET----SVDL--ITTGDFMSRFCSNLGLPKQVQMAATHIARKAVEIDL 238
>gi|291398563|ref|XP_002715922.1| PREDICTED: general transcription factor IIB isoform 2 [Oryctolagus
cuniculus]
Length = 316
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 142/229 (62%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRAMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNL + Q AA +K+ +LD+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>gi|291398561|ref|XP_002715921.1| PREDICTED: general transcription factor IIB isoform 1 [Oryctolagus
cuniculus]
Length = 315
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 142/229 (62%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 22 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 81
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 82 MIGKGTGAASFDEFGNSKYQNRRAMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 141
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 142 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 200
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNL + Q AA +K+ +LD+
Sbjct: 201 LET----SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 243
>gi|281338510|gb|EFB14094.1| hypothetical protein PANDA_006057 [Ailuropoda melanoleuca]
gi|355558148|gb|EHH14928.1| hypothetical protein EGK_00940, partial [Macaca mulatta]
Length = 310
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 142/229 (62%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 17 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 76
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 77 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 136
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 137 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 195
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNL + Q AA +K+ +LD+
Sbjct: 196 LET----SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 238
>gi|332221838|ref|XP_003260070.1| PREDICTED: transcription initiation factor IIB [Nomascus
leucogenys]
Length = 316
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 104/229 (45%), Positives = 142/229 (62%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD +C ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 23 LVEDYRAGDMVCPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNL + Q AA +K+ +LD+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>gi|291232704|ref|XP_002736287.1| PREDICTED: general transcription factor IIB-like [Saccoglossus
kowalevskii]
Length = 315
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 109/230 (47%), Positives = 149/230 (64%), Gaps = 9/230 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD ICSECGLV+ VD SEWR F+N+ + DP RVG N LLSG LST
Sbjct: 22 LVEDYHAGDMICSECGLVVGDRVVDVGSEWRTFSNDKAQKDPCRVGESENSLLSGSNLST 81
Query: 75 VIAKPTAGGSTELLSGSLGKLQARS-SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEI 133
+I KPT G + GS R+ + DR L+ AF+ I+ M+DR+ L TI DR N +
Sbjct: 82 IIGKPT-GNAGFNQDGSAKYHNKRTMNSSDRTLLNAFREIAQMADRINLPKTIVDRTNTL 140
Query: 134 YKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
+K+V +Q+ LRGR+ +AI AACLYIACRQE PRT KE C+++ +KKEIGR + I+K
Sbjct: 141 FKQVHEQRTLRGRSNDAIAAACLYIACRQEGVPRTFKEICAISR-VSKKEIGRCFKEILK 199
Query: 194 HLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNLG+ ++ KAA +K+ ++D+
Sbjct: 200 ALET----SVDL--ITTGDFMSRFCSNLGLPSRVQKAATHIAKKAVEMDL 243
>gi|338725267|ref|XP_001495317.2| PREDICTED: transcription initiation factor IIB-like [Equus
caballus]
Length = 415
Score = 193 bits (490), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 142/229 (62%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 122 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 181
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 182 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 241
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 242 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 300
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNL + Q AA +K+ +LD+
Sbjct: 301 LET----SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 343
>gi|440912096|gb|ELR61695.1| Transcription initiation factor IIB, partial [Bos grunniens mutus]
Length = 310
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 104/229 (45%), Positives = 141/229 (61%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ A D IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 17 LVEDYRAADMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 76
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 77 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 136
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 137 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 195
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNL + Q AA +K+ +LD+
Sbjct: 196 LET----SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 238
>gi|74180816|dbj|BAE25617.1| unnamed protein product [Mus musculus]
Length = 316
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 140/229 (61%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIAYACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D + RFCSNL + Q AA +K+ +LD+
Sbjct: 202 LET----SVDL--ITTGDLMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>gi|255089519|ref|XP_002506681.1| predicted protein [Micromonas sp. RCC299]
gi|226521954|gb|ACO67939.1| predicted protein [Micromonas sp. RCC299]
Length = 364
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 108/255 (42%), Positives = 146/255 (57%), Gaps = 17/255 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFAN-ESSDHDPVRVGGPLN 64
C +C + T ++ DH GD +C+ECGLVLE+ VDE+SEWR F++ + + DP R GP N
Sbjct: 19 CRNCAKPTAIIEDHQQGDLVCTECGLVLESRVVDESSEWRTFSDSDKAGVDPNRTAGPTN 78
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
+L+ GGLST I K G + L+ +L R ++PDR L+QAF I M+D LG+ +
Sbjct: 79 RMLANGGLSTSIGKNPDGTYNQTLT----RLHNRGANPDRALLQAFGRIGEMADHLGMTS 134
Query: 125 TIKDRANEIYKKV-EDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+KD A +IY+ V + +PL G++Q A+ AA LYIACRQE RT KE C A TT KE
Sbjct: 135 VVKDGACDIYRTVVKPGQPLLGKSQPAMFAASLYIACRQEGTNRTFKEICGGAPNTTVKE 194
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
IGR ++IVK ++ Q +E I RFC NLG+ N AV
Sbjct: 195 IGRCYKYIVKAIDGLNTQMMEQ-MITPEKLTNRFCGNLGLANLEFLKLATAV-------- 245
Query: 244 RLILVFFSLFLVETH 258
I F SL + E H
Sbjct: 246 --IATFRSLRITEGH 258
>gi|432107068|gb|ELK32500.1| Transcription initiation factor IIB, partial [Myotis davidii]
Length = 310
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 104/229 (45%), Positives = 141/229 (61%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS LST
Sbjct: 17 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDRDLST 76
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 77 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 136
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 137 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 195
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNL + Q AA +K+ +LD+
Sbjct: 196 LET----SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 238
>gi|449508196|ref|XP_004176261.1| PREDICTED: transcription initiation factor IIB isoform 2
[Taeniopygia guttata]
Length = 285
Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 138/219 (63%), Gaps = 7/219 (3%)
Query: 25 ICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGS 84
ICSECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST+I K T S
Sbjct: 2 ICSECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPLLSDGDLSTMIGKGTGAAS 61
Query: 85 TELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLR 144
+ S + + S DR ++ AFK I+ M+DR+ L I DR N ++K+V +QK L+
Sbjct: 62 FDEFGNSKYQNRRTMSSSDRAMMNAFKEITNMADRINLPRNIVDRTNNLFKQVYEQKSLK 121
Query: 145 GRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVE 204
GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K LE SV+
Sbjct: 122 GRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKALET----SVD 176
Query: 205 MGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
+ I D++ RFCSNLG+ Q AA +K+ +LD+
Sbjct: 177 L--ITTGDFMSRFCSNLGLPKQVQMAATHIARKAVELDL 213
>gi|115702419|ref|XP_796335.2| PREDICTED: transcription initiation factor IIB-like
[Strongylocentrotus purpuratus]
Length = 321
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 100/229 (43%), Positives = 139/229 (60%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D AGD IC ECGLV+ +D SEWR F+N+ ++ DP RVG NPLL G LST
Sbjct: 28 LIEDSHAGDLICPECGLVVADRVIDVGSEWRTFSNDKANIDPSRVGAAENPLLEGNDLST 87
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I S + ++ S +R LI AF+ I AM+DR+ L TI DRA+ ++
Sbjct: 88 IIGGVLGNASFNEDGSKKYRSKSNMSSTNRTLINAFREIGAMADRINLPKTIVDRAHTLF 147
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V DQ+ LRGR+ +AI AACLYIACRQE PRT KE C+V+ K+EIGR + I+K
Sbjct: 148 KQVNDQRTLRGRSNDAIAAACLYIACRQEGVPRTFKEICAVSR-VNKREIGRCFKLILKA 206
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE + I D++ RFCSNL + + +AA +K+++LD+
Sbjct: 207 LE------TNVVLITTGDFMSRFCSNLSLPPKVQRAATHIARKADELDL 249
>gi|357155150|ref|XP_003577025.1| PREDICTED: transcription initiation factor IIB-like [Brachypodium
distachyon]
Length = 293
Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 107/247 (43%), Positives = 155/247 (62%), Gaps = 8/247 (3%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSE---WRIFANESSDHDPV 57
M SYC DC T +VFD ++GDTICSECGLVL+++ ++E + + FA++ ++DP
Sbjct: 1 MESSYCKDCNLSTVIVFDRASGDTICSECGLVLDSHYIEEKANPHTFTHFASKDDNYDPF 60
Query: 58 RVGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMS 117
VG + L S + I P + G+L K SH N AF I+ M+
Sbjct: 61 CVGDSTSNLESKH--DSTILWPEVFDNRRSFCGNLQKSVDFYSHQSDN---AFNYIADMA 115
Query: 118 DRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVAN 177
DRLG+V +I+ +A IYKK ++ K R + ++ AACLYIACRQ NK RT+KE C+V +
Sbjct: 116 DRLGIVDSIQTQAKNIYKKAKEHKLFNIRKKHSVCAACLYIACRQANKVRTIKEICTVTD 175
Query: 178 GTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQK 237
G +KKE+ RAK+ +V+H+E G+ +E+ ++ D +RRFCS LGMT QA++AA+EA +
Sbjct: 176 GVSKKEVSRAKDLLVQHIEGHKGKCMEVNSVLPRDLVRRFCSTLGMTIQAIQAAEEAANR 235
Query: 238 SEDLDIR 244
E LDIR
Sbjct: 236 VERLDIR 242
>gi|321478592|gb|EFX89549.1| hypothetical protein DAPPUDRAFT_303055 [Daphnia pulex]
Length = 311
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 111/231 (48%), Positives = 144/231 (62%), Gaps = 9/231 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D AGD ICSECGLV+ VD SEWR F+NE+ + DP RVGG N LL+G L+T
Sbjct: 18 LVDDCHAGDQICSECGLVVGDRVVDVGSEWRTFSNEAGNADPSRVGGAENTLLNGTNLTT 77
Query: 75 VIAKPTAGGSTEL--LSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
+I T+GG T G++ K + S DR L+ AFK IS M+DR+ L TI DRAN
Sbjct: 78 MIGPSTSGGGTSFNETGGAVYKNRQTMSSSDRTLVNAFKEISNMADRINLPRTIVDRANL 137
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K V D K L+G + +A +ACLYIACRQE PRT KE C+V+ KKEIGR + I+
Sbjct: 138 LFKSVHDGKNLKGHSTDASASACLYIACRQEGVPRTFKEICAVSK-IGKKEIGRCFKLIL 196
Query: 193 KHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
K LE SVE+ I SD++ RFCSNLG+ + A K+ +LD+
Sbjct: 197 KALET----SVEI--IKTSDFMPRFCSNLGLPAIVQRNASHIGGKAVELDV 241
>gi|198475810|ref|XP_002132499.1| GA27746 [Drosophila pseudoobscura pseudoobscura]
gi|198137970|gb|EDY69901.1| GA27746 [Drosophila pseudoobscura pseudoobscura]
Length = 314
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 104/231 (45%), Positives = 142/231 (61%), Gaps = 8/231 (3%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
+ ++ D+ AGD ICSECGLV+ +D SEWR F+NE S DP RVGGP NPLL
Sbjct: 20 SPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLXXX-X 78
Query: 73 STVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
I T S + + + S DR+LI AFK IS+M+DR+ L TI DRAN
Sbjct: 79 XXXIGPGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINLPKTIVDRANN 138
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K+V D K L+GR+ +A +ACLYIACRQE PRT KE C+V+ +KKEIGR + +
Sbjct: 139 LFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLTL 197
Query: 193 KHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
K LE SV++ I +D++ RFC+NL + N +AA +K+ ++DI
Sbjct: 198 KALET----SVDL--ITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDI 242
>gi|198428626|ref|XP_002129417.1| PREDICTED: similar to Transcription initiation factor IIB (General
transcription factor TFIIB) (S300-II) [Ciona
intestinalis]
Length = 314
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 146/231 (63%), Gaps = 10/231 (4%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ ++D SEWR F+N+ D RVG NPLLSG LST
Sbjct: 20 LVEDYRAGDMICPECGLVVGDRTIDVGSEWRTFSNDKDSKDMSRVGDSQNPLLSGSDLST 79
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSS--HPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
+I +P+ + +G + R + + DR LI AF+ IS+M+DR+ L I DR+N+
Sbjct: 80 IIERPSGPPGSSNDNG-FSQFSNRKTMNNSDRVLIHAFREISSMADRISLPKNIVDRSNK 138
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K+V D K LRGR +AI AACLYIACRQE PRT KE C+++ +KKEIGR+ + IV
Sbjct: 139 LFKQVYDSKSLRGRANDAISAACLYIACRQEGVPRTFKEICAISR-ISKKEIGRSFKLIV 197
Query: 193 KHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
K+LE +VE+ I + D++ RFCSNL + + A +K+ + D+
Sbjct: 198 KNLET----NVEV--ITSGDFMSRFCSNLNLPPYVQRGATYIARKAVEKDL 242
>gi|338224396|gb|AEI88079.1| transcription initiation factor IIB-like protein [Scylla
paramamosain]
Length = 219
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 98/205 (47%), Positives = 132/205 (64%), Gaps = 7/205 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD ICSECGLV+ +D SEWR F+NE +++DP RVGGP NPLL+G LST
Sbjct: 22 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKANNDPSRVGGPENPLLNGSDLST 81
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I G S + S + + S DR LI AF+ IS M+D++ L TI DRAN ++
Sbjct: 82 IIGPGAGGASFDGFGNSKYQNRRSMSSSDRALINAFREISNMADKINLPKTIVDRANLLF 141
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V D K L+GR+ +AI +A LYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 142 KQVHDGKNLKGRSNDAIASASLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLILKA 200
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCS 219
LE ++ I D++ RFCS
Sbjct: 201 LE------TQVDLITTGDFMSRFCS 219
>gi|281203102|gb|EFA77303.1| transcription initiation factor IIB [Polysphondylium pallidum
PN500]
Length = 344
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 153/243 (62%), Gaps = 13/243 (5%)
Query: 5 YCADCKRL-TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFAN-ESSDHDPVRVGGP 62
+C C+ ++V D++ GD IC ECG+VL VDE SEWR F+N ES+ DP RVGGP
Sbjct: 39 FCHICQNPDPDIVEDYAKGDLICRECGVVLGDRIVDEHSEWRTFSNSESTGSDPNRVGGP 98
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSS--HPDRNLIQAFKSISAMSDRL 120
NPLL GLSTVI K T+ S+ +L ++Q R + + DR+L+ FK I+ M+D +
Sbjct: 99 TNPLLRDSGLSTVIGKGTSKDSS-----ALSRMQNRGALANGDRSLLAGFKEIARMADHM 153
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GL T++D ANE++++++D+K ++GR+ + I+AA LYIACR E RT KE C+++N +
Sbjct: 154 GLPQTVQDTANELFREMDDKKSMKGRSADGILAASLYIACRIEGITRTFKEICALSNNVS 213
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
KK++GR K ++ + + + I D++ RFC+NL + +AA+ + + +
Sbjct: 214 KKDLGRC----YKMMKEALANRINLQAISTEDFMTRFCTNLNLPLDVKRAAEHVSRTAME 269
Query: 241 LDI 243
L I
Sbjct: 270 LGI 272
>gi|195999146|ref|XP_002109441.1| hypothetical protein TRIADDRAFT_53474 [Trichoplax adhaerens]
gi|190587565|gb|EDV27607.1| hypothetical protein TRIADDRAFT_53474 [Trichoplax adhaerens]
Length = 340
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 100/230 (43%), Positives = 147/230 (63%), Gaps = 8/230 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+SAGD +C ECGLV+ +D SEWR F+NE + DP RVG NPLL+G L+T
Sbjct: 46 LIEDYSAGDIVCPECGLVVGDRIIDVGSEWRTFSNEKARSDPSRVGASENPLLNGSDLTT 105
Query: 75 VIAK-PTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEI 133
VI K P+ + ++ +L + ++ + DR+L+ AF+ I+ M+DR+ L TI DRA +
Sbjct: 106 VIGKSPSGSAAYDVDGNALYRNRSAMNGTDRSLVNAFQEIATMADRINLPKTIVDRAKVL 165
Query: 134 YKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
+K+ + K L+GR+ +A+ +A LYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 166 FKQGYELKSLKGRSNDALASASLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKAILK 224
Query: 194 HLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE +VEM I D++ RFCSNL + N KAA ++ +LD+
Sbjct: 225 ALET----NVEM--ISTQDFMSRFCSNLNLPNYVQKAASHIAHRAIELDL 268
>gi|268565685|ref|XP_002647378.1| C. briggsae CBR-TTB-1 protein [Caenorhabditis briggsae]
Length = 306
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/230 (43%), Positives = 141/230 (61%), Gaps = 11/230 (4%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ DH AGD +C CGLV+ VD +EWR F+NE S +DP RVG P NPLL+GG LST
Sbjct: 15 LIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPLLTGGDLST 74
Query: 75 VIAKPTAGGSTELLSGSLGKLQARS-SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEI 133
IA G ++ SL Q +S ++ DR + A I MS+R+ L I+D A+ I
Sbjct: 75 TIAVGFGGSDSD---NSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNIQDNASRI 131
Query: 134 YKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
+K V D + LRG+N EA AACLYIACR++ PRT KE C+V+ +KKEIGR + I++
Sbjct: 132 FKDVLDSRALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSR-VSKKEIGRCFKIIIR 190
Query: 194 HLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
+LE + Q I ++D++ RFC NL + N AA +++ D+D+
Sbjct: 191 NLETNLEQ------ITSADFMSRFCGNLYLPNSIQAAATRIAKRAVDMDL 234
>gi|341885208|gb|EGT41143.1| hypothetical protein CAEBREN_12544 [Caenorhabditis brenneri]
Length = 254
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/230 (43%), Positives = 141/230 (61%), Gaps = 11/230 (4%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ DH AGD +C CGLV+ VD +EWR F+NE S +DP RVG P NPLLSGG LST
Sbjct: 15 LIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPLLSGGDLST 74
Query: 75 VIAKPTAGGSTELLSGSLGKLQARS-SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEI 133
IA G ++ SL Q +S ++ DR + A I MS+R+ L I++ A+ I
Sbjct: 75 TIAVGFGGSDSD---NSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNIQENASRI 131
Query: 134 YKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
+K V D + LRG+N EA AACLYIACR++ PRT KE C+V+ +KKEIGR + I++
Sbjct: 132 FKDVLDSRALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSR-VSKKEIGRCFKIIIR 190
Query: 194 HLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
+LE + Q I ++D++ RFC NL + N AA +++ D+D+
Sbjct: 191 NLETNLEQ------ITSADFMSRFCGNLYLPNSIQAAATRIAKRAVDMDL 234
>gi|443732672|gb|ELU17299.1| hypothetical protein CAPTEDRAFT_167658 [Capitella teleta]
Length = 285
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 140/219 (63%), Gaps = 7/219 (3%)
Query: 25 ICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGS 84
ICS CGLV+ +D SEWR F+NE + D RVG NPLL G LST+I+ T S
Sbjct: 2 ICSVCGLVVGDRVIDVGSEWRTFSNEKNTKDASRVGSAENPLLEGADLSTMISIGTGDAS 61
Query: 85 TELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLR 144
+ + + + + + DR+++ AFK I+ MSDRL L I DRAN ++K+V + K L+
Sbjct: 62 FDDQGKPVYRNRRQMNSSDRSMVNAFKEINQMSDRLNLPRMIMDRANTLFKQVHEGKSLK 121
Query: 145 GRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVE 204
GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGRA + I+K+LE SVE
Sbjct: 122 GRSNDAIASACLYIACRQEQVPRTFKEICAVSK-ISKKEIGRAFKLILKNLET----SVE 176
Query: 205 MGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
+ I D++ RFCSNLG+ + +AA +K+ DLD+
Sbjct: 177 L--ITTGDFMSRFCSNLGLPSVVQRAATHIARKAVDLDL 213
>gi|341901067|gb|EGT57002.1| hypothetical protein CAEBREN_14440 [Caenorhabditis brenneri]
Length = 306
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/230 (43%), Positives = 141/230 (61%), Gaps = 11/230 (4%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ DH AGD +C CGLV+ VD +EWR F+NE S +DP RVG P NPLLSGG LST
Sbjct: 15 LIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPLLSGGDLST 74
Query: 75 VIAKPTAGGSTELLSGSLGKLQARS-SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEI 133
IA G ++ SL Q +S ++ DR + A I MS+R+ L I++ A+ I
Sbjct: 75 TIAVGFGGSDSD---NSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNIQENASRI 131
Query: 134 YKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
+K V D + LRG+N EA AACLYIACR++ PRT KE C+V+ +KKEIGR + I++
Sbjct: 132 FKDVLDSRALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSR-VSKKEIGRCFKIIIR 190
Query: 194 HLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
+LE + Q I ++D++ RFC NL + N AA +++ D+D+
Sbjct: 191 NLETNLEQ------ITSADFMSRFCGNLYLPNSIQAAATRIAKRAVDMDL 234
>gi|348586162|ref|XP_003478838.1| PREDICTED: LOW QUALITY PROTEIN: transcription initiation factor
IIB-like [Cavia porcellus]
Length = 317
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 103/230 (44%), Positives = 141/230 (61%), Gaps = 8/230 (3%)
Query: 15 VVFDHSAGDTICSEC-GLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
+V D+ AGD IC C GL++ +D SEWR F+N+ + DP RVG NPLLS G LS
Sbjct: 23 LVEDYRAGDMICPGCRGLLVGDRVIDVGSEWRTFSNDKATKDPSRVGDAQNPLLSNGDLS 82
Query: 74 TVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEI 133
T+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N +
Sbjct: 83 TMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNL 142
Query: 134 YKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
+K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 FKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILK 201
Query: 194 HLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNL + Q AA +K+ +LD+
Sbjct: 202 ALET----SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 245
>gi|412985634|emb|CCO19080.1| predicted protein [Bathycoccus prasinos]
Length = 396
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/237 (43%), Positives = 142/237 (59%), Gaps = 11/237 (4%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFAN-ESSDHDPVRVGGPLN 64
C+ CK T +V DH+ GD IC+ECGLV+E+ ++DE SEWR F++ + + DP R G N
Sbjct: 18 CSQCKVQTTLVEDHAQGDLICTECGLVVESRTIDECSEWRTFSDSDKAGGDPSRTVGATN 77
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
+LSGGGLST I + G + +L +L R +PD+ L+ AF I M+DR+ +
Sbjct: 78 NMLSGGGLSTTIGRNPDG----TFNQTLTRLHNREGNPDKVLMAAFSQIGDMADRMAMNQ 133
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
TIK A E+YK V +G++ A+ AACLYIACRQE K RT KE C A G+T KEI
Sbjct: 134 TIKSGACELYKVVTSSHSTQGKSSVAMFAACLYIACRQEGKTRTFKEICGAAVGSTVKEI 193
Query: 185 GRAKEFIVK---HLEAEMGQSVEMGTIHASDYLRRFCSNLGMTN-QAVKAAQEAVQK 237
GR FI++ L+ +M + +M I RFC NLG+ N + ++ A+QK
Sbjct: 194 GRCYRFIIRVCEGLDLQMQMNEQM--ITPELLTNRFCGNLGLANSEFIRVCSSAIQK 248
>gi|308507101|ref|XP_003115733.1| CRE-TTB-1 protein [Caenorhabditis remanei]
gi|308256268|gb|EFP00221.1| CRE-TTB-1 protein [Caenorhabditis remanei]
Length = 306
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/230 (43%), Positives = 141/230 (61%), Gaps = 11/230 (4%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ DH AGD +C CGLV+ VD +EWR F+NE S +DP RVG P NPLLSGG LST
Sbjct: 15 LIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPLLSGGDLST 74
Query: 75 VIAKPTAGGSTELLSGSLGKLQARS-SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEI 133
IA G ++ SL Q +S ++ DR + A I MS+R+ L I++ A+ I
Sbjct: 75 TIAVGFGGSDSD---NSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNIQENASRI 131
Query: 134 YKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
+K V D + LRG+N EA AACLYIACR++ PRT KE C+V+ +KKEIGR + I++
Sbjct: 132 FKDVLDSRALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSR-VSKKEIGRCFKIIIR 190
Query: 194 HLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
+LE + Q I ++D++ RFC NL + N AA +++ D+D+
Sbjct: 191 NLETNLEQ------ITSADFMSRFCGNLYLPNSIQAAATRIAKRAVDMDL 234
>gi|17564892|ref|NP_503146.1| Protein TTB-1 [Caenorhabditis elegans]
gi|21362986|sp|O16991.2|TF2B_CAEEL RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|351051072|emb|CCD74279.1| Protein TTB-1 [Caenorhabditis elegans]
Length = 306
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/230 (44%), Positives = 139/230 (60%), Gaps = 11/230 (4%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ DH AGD +C CGLV+ VD +EWR F+NE S +DP RVG P NPLLSGG LST
Sbjct: 15 LIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPLLSGGDLST 74
Query: 75 VIAKPTAGGSTELLSGSLGKLQARS-SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEI 133
IA G ++ SL Q +S ++ DR + A I MS+R+ L I+D A+ I
Sbjct: 75 TIAVGFGGSDSD---NSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNIQDSASRI 131
Query: 134 YKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
+K V + K LRG+N EA AACLYIACR++ PRT KE C+V+ +KKEIGR + IV+
Sbjct: 132 FKDVLESKALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSR-VSKKEIGRCFKIIVR 190
Query: 194 HLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE + Q I ++D++ RFC NL + N AA + + D+D+
Sbjct: 191 SLETNLEQ------ITSADFMSRFCGNLSLPNSIQAAATRIAKCAVDMDL 234
>gi|125585246|gb|EAZ25910.1| hypothetical protein OsJ_09753 [Oryza sativa Japonica Group]
Length = 309
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 109/246 (44%), Positives = 143/246 (58%), Gaps = 8/246 (3%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS--DHDPVRVGGP 62
YC +C R T VV DH+ GDTIC+EC LVLE +DETSEWR F++ S D DP RVGG
Sbjct: 11 YCPECHRTTVVVVDHATGDTICTECALVLEERYIDETSEWRTFSDAGSGEDRDPNRVGGC 70
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGL 122
+P LS L TV+A P + + S ++ ++S D +L AF++IS M+DRL L
Sbjct: 71 SDPFLSHAELGTVVA-PAKRQAKDTASPPHVRVDSKSGQ-DSSLAVAFRAISDMADRLQL 128
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENK--PRTVKEFCSVANG-T 179
V TI+DRA E++KK+E+ K R + PRT+KE SV
Sbjct: 129 VATIRDRAKELFKKMEEAKLCARVRNRRRPRTRPASTSRAATRATPRTLKELASVMRDCQ 188
Query: 180 TKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSE 239
KKEIGR + I +HL E G ++EMG + A+DY+ RF S LGM V+ AQ A Q E
Sbjct: 189 DKKEIGRMERIIRRHLGEEAGTAMEMGVVRAADYMSRFGSRLGMGKPEVREAQRAAQTLE 248
Query: 240 D-LDIR 244
D LD+R
Sbjct: 249 DKLDVR 254
>gi|344249199|gb|EGW05303.1| Transcription initiation factor IIB [Cricetulus griseus]
Length = 285
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/219 (45%), Positives = 135/219 (61%), Gaps = 7/219 (3%)
Query: 25 ICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGS 84
IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST+I K T S
Sbjct: 2 ICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAAS 61
Query: 85 TELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLR 144
+ S + + S DR ++ AFK I+ M+DR+ L I DR N ++K+V +QK L+
Sbjct: 62 FDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLK 121
Query: 145 GRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVE 204
GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K LE SV+
Sbjct: 122 GRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKALET----SVD 176
Query: 205 MGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
+ I D++ RFCSNL + Q AA +K+ +LD+
Sbjct: 177 L--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 213
>gi|119593565|gb|EAW73159.1| general transcription factor IIB, isoform CRA_a [Homo sapiens]
Length = 285
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/219 (45%), Positives = 135/219 (61%), Gaps = 7/219 (3%)
Query: 25 ICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGS 84
IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST+I K T S
Sbjct: 2 ICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAAS 61
Query: 85 TELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLR 144
+ S + + S DR ++ AFK I+ M+DR+ L I DR N ++K+V +QK L+
Sbjct: 62 FDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLK 121
Query: 145 GRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVE 204
GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K LE SV+
Sbjct: 122 GRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKALET----SVD 176
Query: 205 MGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
+ I D++ RFCSNL + Q AA +K+ +LD+
Sbjct: 177 L--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 213
>gi|328703015|ref|XP_001951275.2| PREDICTED: transcription initiation factor IIB-like [Acyrthosiphon
pisum]
Length = 311
Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 100/231 (43%), Positives = 142/231 (61%), Gaps = 9/231 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANE--SSDHDPVRVGGPLNPLLSGGGL 72
++ D+ AGD ICSECGLV+ +D SEWR F+N+ ++ DP RVGG NPLL+G L
Sbjct: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNDKGANSADPSRVGGAENPLLNGSDL 75
Query: 73 STVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
ST++ S + G K + +R+L+ A++ I M+DR+ L I DRAN
Sbjct: 76 STLVGPSRGDASFDEFGGMKYKNKGMVCSTNRSLLNAYREIGLMADRINLPRNIVDRANV 135
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K+V D K L+GR+ +AI +A LYIACRQE PRT KE C+V+ +KKEIGR + I+
Sbjct: 136 LFKQVHDGKNLKGRSNDAIASASLYIACRQEGVPRTFKEICAVSK-VSKKEIGRVFKLIL 194
Query: 193 KHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
K LE SV++ I D++ RFC NLG+ N +AA +K+ + DI
Sbjct: 195 KALET----SVDL--ITTGDFMSRFCCNLGLPNMVQRAATHIAKKAVEYDI 239
>gi|328865397|gb|EGG13783.1| transcription initiation factor IIB [Dictyostelium fasciculatum]
Length = 331
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/242 (42%), Positives = 147/242 (60%), Gaps = 13/242 (5%)
Query: 6 CADCKRL-TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFAN-ESSDHDPVRVGGPL 63
C CK +VV D++ GD IC CG V+ VDE SEWR F+N ES+ DP RVGGP
Sbjct: 27 CPVCKDPDPDVVEDYARGDLICRRCGCVIGDRIVDEHSEWRTFSNSESTGADPNRVGGPN 86
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSS--HPDRNLIQAFKSISAMSDRLG 121
NPLL GGLSTVI K T G +LS ++Q R + DR+L+ AFK I MSD +G
Sbjct: 87 NPLLREGGLSTVIGKGT-GKDASVLS----RMQNRGALGSGDRSLLAAFKEIEKMSDHIG 141
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L T++D A E++++++D+KP++G++ + ++AA LY+ACR + RT KE C+++N +K
Sbjct: 142 LPQTVQDTAKELFRQMDDRKPMKGKSADGMLAASLYMACRIDGIARTFKEVCALSNNVSK 201
Query: 182 KEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDL 241
KE+ + K + +G + I D++ RFCSNL + N KAA + + DL
Sbjct: 202 KELAKC----YKQMREALGDVHSLHAISTDDFMTRFCSNLSLPNDVKKAADHVSRTAIDL 257
Query: 242 DI 243
I
Sbjct: 258 GI 259
>gi|39545936|gb|AAR28031.1| mutant TFIIB3 [Arabidopsis thaliana]
Length = 336
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/254 (41%), Positives = 143/254 (56%), Gaps = 10/254 (3%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES--SDHDPVR 58
M + C DCKR T +V DHS+GDTICSECGLVLEA+ ++ + EWR FA++ SD DP R
Sbjct: 1 MEEETCLDCKRPTIMVVDHSSGDTICSECGLVLEAHIIEYSQEWRTFASDDNHSDRDPNR 60
Query: 59 VGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKL----QARSSHPDRNLIQAFKSIS 114
VG NP L G L T+I KP S+ L + L +H + + QAF+ I
Sbjct: 61 VGAATNPFLKSGDLVTIIEKPKETASSVLSKDDISTLFRAHNQVKNHEEDLIKQAFEEIQ 120
Query: 115 AMSDRLGLVTTIKDRANEIYKKVE---DQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
M+D L L I RA EI K + + K RG+ AI AA + ACR+ RT+KE
Sbjct: 121 RMTDALDLDIVINSRACEIVSKYDGHANTKLRRGKKLNAICAASVSTACRELQLSRTLKE 180
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEA-EMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKA 230
VANG KK+I + I + LE+ + S I+ D +RRFCS L ++ + + A
Sbjct: 181 IAEVANGVDKKDIRKESLVIKRVLESHQTSVSASQAIINTGDLVRRFCSKLDISQREIMA 240
Query: 231 AQEAVQKSEDLDIR 244
EAV+K+E+ DIR
Sbjct: 241 IPEAVEKAENFDIR 254
>gi|393912489|gb|EJD76760.1| hypothetical protein LOAG_16340 [Loa loa]
Length = 453
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/230 (45%), Positives = 138/230 (60%), Gaps = 11/230 (4%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V DH AGD IC ECGLV+ VD +EWR F+NE S DP RVG P NPLL LST
Sbjct: 162 LVEDHRAGDLICPECGLVVGDRLVDVGTEWRSFSNEKSGADPSRVGAPENPLLGSADLST 221
Query: 75 VIAKPTAGGSTELLSGSLGKLQARS-SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEI 133
IA G ++ SL Q ++ ++ DR + Q I MS R+ L +I+D A +I
Sbjct: 222 SIAVGFGGSESDY---SLANAQRKNMNNMDRQMSQGLSVIREMSARIHLPKSIEDGAAKI 278
Query: 134 YKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
+K V D K LRG+N EA AACLYIACR+E PRT KE C+ A+ +KKEIGR + I+K
Sbjct: 279 FKDVLDSKALRGKNNEAQAAACLYIACRKEGVPRTFKEICA-ASRVSKKEIGRCFKLIIK 337
Query: 194 HLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE + Q I ++D++ RFC NLG+ + AA +K+ +LD+
Sbjct: 338 SLETSLEQ------ITSADFMSRFCGNLGLPHSIQAAATRIAKKAVELDL 381
>gi|170594171|ref|XP_001901837.1| Transcription initiation factor IIB [Brugia malayi]
gi|158590781|gb|EDP29396.1| Transcription initiation factor IIB, putative [Brugia malayi]
Length = 309
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 102/229 (44%), Positives = 133/229 (58%), Gaps = 14/229 (6%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V DH AGD IC ECGLV+ VD +EWR F+NE S DP RVG P NPLL LST
Sbjct: 23 LVEDHRAGDLICPECGLVVGDRLVDVGTEWRSFSNEKSGADPSRVGAPENPLLGSADLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
IA G T ++ + DR + Q I MS R+ L +I+D A +I+
Sbjct: 83 SIAVGFGGSETNAQRKNMNNM-------DRQMSQGLSVIREMSARIHLPKSIEDGAAKIF 135
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K V D K LRG+N EA AACLYIACR+E PRT KE C+ A+ +KKEIGR + I+K
Sbjct: 136 KDVLDSKALRGKNNEAQAAACLYIACRKEGVPRTFKEICA-ASRVSKKEIGRCFKLIIKS 194
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE + Q I ++D++ RFC NLG+ + AA +K+ +LD+
Sbjct: 195 LETSLEQ------ITSADFMSRFCGNLGLPHSIQAAATRIAKKAVELDL 237
>gi|312087211|ref|XP_003145382.1| transcription initiation factor IIB [Loa loa]
Length = 312
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 105/235 (44%), Positives = 139/235 (59%), Gaps = 13/235 (5%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V DH AGD IC ECGLV+ VD +EWR F+NE S DP RVG P NPLL LST
Sbjct: 13 LVEDHRAGDLICPECGLVVGDRLVDVGTEWRSFSNEKSGADPSRVGAPENPLLGSADLST 72
Query: 75 VIAKPTAGGSTEL-----LSGSLGKLQARS-SHPDRNLIQAFKSISAMSDRLGLVTTIKD 128
IA G ++ L SL Q ++ ++ DR + Q I MS R+ L +I+D
Sbjct: 73 SIAVGFGGSESDYRQFIDLRCSLANAQRKNMNNMDRQMSQGLSVIREMSARIHLPKSIED 132
Query: 129 RANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAK 188
A +I+K V D K LRG+N EA AACLYIACR+E PRT KE C+ A+ +KKEIGR
Sbjct: 133 GAAKIFKDVLDSKALRGKNNEAQAAACLYIACRKEGVPRTFKEICA-ASRVSKKEIGRCF 191
Query: 189 EFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
+ I+K LE + Q I ++D++ RFC NLG+ + AA +K+ +LD+
Sbjct: 192 KLIIKSLETSLEQ------ITSADFMSRFCGNLGLPHSIQAAATRIAKKAVELDL 240
>gi|340376818|ref|XP_003386928.1| PREDICTED: transcription initiation factor IIB-like [Amphimedon
queenslandica]
Length = 324
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 100/239 (41%), Positives = 143/239 (59%), Gaps = 8/239 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD +C ECGLV+ +D SEWR F+NE + D RVG NPLL G LS+
Sbjct: 30 LIEDYHAGDMVCPECGLVVGDRVIDVGSEWRTFSNERNATDRSRVGAAENPLLDGHELSS 89
Query: 75 VIAKPTAGGSTELLSGSLGKL-QARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEI 133
IA T T S K ++ S D++L+ AFK I+ M+DRL L +I DR N +
Sbjct: 90 FIAPVTGRPGTNDSGKSFPKFSKSGVSAGDKSLMTAFKEIANMADRLNLPRSIVDRGNAL 149
Query: 134 YKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
+K+V D+K L+GR +A+ AACLYIACRQE+ PR+ KE C+V+ +KKEIGR + I
Sbjct: 150 FKQVNDEKTLKGRANDAVAAACLYIACRQEDVPRSFKEICAVSR-HSKKEIGRCFKLI-- 206
Query: 194 HLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDIRLILVFFSL 252
+ M T+ +D++ R+C+NLG+ KAA QK+ +LD+ V+ S+
Sbjct: 207 ----RQAANPAMNTVSTTDFMSRYCTNLGLPLPVQKAASFIAQKAVELDLAPGRVYLSV 261
>gi|15228689|ref|NP_189584.1| transcription initiation factor TFIIB [Arabidopsis thaliana]
gi|11994519|dbj|BAB02583.1| transcription initiation factor IIB (TFIIB)-like protein
[Arabidopsis thaliana]
gi|332644057|gb|AEE77578.1| transcription initiation factor TFIIB [Arabidopsis thaliana]
Length = 336
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 105/254 (41%), Positives = 143/254 (56%), Gaps = 10/254 (3%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES--SDHDPVR 58
M + C DCKR T +V DHS+GDTICSECGLVLEA+ ++ + EWR FA++ SD DP R
Sbjct: 1 MEEETCLDCKRPTIMVVDHSSGDTICSECGLVLEAHIIEYSQEWRTFASDDNHSDRDPNR 60
Query: 59 VGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKL----QARSSHPDRNLIQAFKSIS 114
VG NP L G L T+I KP S+ L + L +H + + QAF+ I
Sbjct: 61 VGAATNPFLKSGDLVTIIEKPKETASSVLSKDDISTLFRAHNQVKNHEEDLIKQAFEEIQ 120
Query: 115 AMSDRLGLVTTIKDRANEIYKKVE---DQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
M+D L L I RA EI K + + K RG+ AI AA + ACR+ RT+KE
Sbjct: 121 RMTDALDLDIVINSRACEIVSKYDGHANTKLRRGKKLNAICAASVSTACRELQLSRTLKE 180
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEA-EMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKA 230
VANG KK+I + I + LE+ + S I+ + +RRFCS L ++ + + A
Sbjct: 181 IAEVANGVDKKDIRKESLVIKRVLESHQTSVSASQAIINTGELVRRFCSKLDISQREIMA 240
Query: 231 AQEAVQKSEDLDIR 244
EAV+K+E+ DIR
Sbjct: 241 IPEAVEKAENFDIR 254
>gi|297818592|ref|XP_002877179.1| transcription factor IIB family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297323017|gb|EFH53438.1| transcription factor IIB family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 336
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 105/254 (41%), Positives = 148/254 (58%), Gaps = 10/254 (3%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES--SDHDPVR 58
M + C DCKR T V DHS+GDTICSECGLVLEA+ ++ + EWR FA++ SD DP R
Sbjct: 1 MEEETCLDCKRPTITVIDHSSGDTICSECGLVLEAHIIEYSEEWRTFASDDNRSDRDPNR 60
Query: 59 VGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKL---QARSSHPDRNLI-QAFKSIS 114
VG P NPLL G L TVI KP S+ + + L Q + + + +LI +AF+ I
Sbjct: 61 VGAPTNPLLKSGNLVTVIEKPKENVSSVVSKDDISTLCRTQNQVKNHEEDLIKKAFEEIQ 120
Query: 115 AMSDRLGLVTTIKDRANEIYKKV---EDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
M+D L L + RA EI K + K RG+ A+ AA + +ACR+ RT+KE
Sbjct: 121 RMTDALYLNIAVNSRACEIVSKFGGHANTKLRRGKKLYAVCAASVSMACRELKLSRTLKE 180
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQ-SVEMGTIHASDYLRRFCSNLGMTNQAVKA 230
VANG K+I ++ I + LE++ S I+ + +RRFCS L ++ + + A
Sbjct: 181 IAMVANGVELKDIRKSSMVIKRVLESDQASVSAAQAIINTGELVRRFCSKLDISQREIMA 240
Query: 231 AQEAVQKSEDLDIR 244
+EAV+K+E+ DIR
Sbjct: 241 IREAVEKAENFDIR 254
>gi|384244800|gb|EIE18298.1| cyclin-like protein [Coccomyxa subellipsoidea C-169]
Length = 337
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 140/225 (62%), Gaps = 9/225 (4%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH-DPVRVGGPLN 64
CADC ++ V DH+ GD +C+ CGLV E++ +DE+SEWR F ++ D DP RVGGP N
Sbjct: 12 CADCGS-SDFVEDHAQGDLVCTGCGLVAESHVIDESSEWRNFGDKDGDTTDPSRVGGPTN 70
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
LL+ G LSTVI PT G S L+ +L + A+ S+PD+ L++AF IS + + LGL
Sbjct: 71 HLLTNG-LSTVIGAPTKGASNATLTRNLQRAHAQGSNPDQALLRAFGHISRLCEALGLNR 129
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
KDR NE++K +++ +RG+ A+ AA IACRQ PRT KE +V + K+I
Sbjct: 130 ACKDRGNELFKNTWEKRGIRGKGIAAVCAAVTLIACRQVGFPRTFKEMEAVIADGSIKDI 189
Query: 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVK 229
R I K L+ +M EM + +D++RRFCS LG+T + +K
Sbjct: 190 KRCYRLITKQLDEKM----EM--VTPADFVRRFCSRLGLTQRDMK 228
>gi|223975949|gb|ACN32162.1| unknown [Zea mays]
gi|414886467|tpg|DAA62481.1| TPA: hypothetical protein ZEAMMB73_928076 [Zea mays]
Length = 144
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 83/119 (69%), Positives = 100/119 (84%), Gaps = 1/119 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+DS+C DCK+ TEV FDHSAGD +C+ECGLVLEA+SVDETSEWR FANES+D+DPVRVG
Sbjct: 1 MSDSFCPDCKKHTEVAFDHSAGDMVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDR 119
GP NPLL+ GGLSTVIAKP G + LS SLG+ Q R S+PDR+LI AF++I+ M+DR
Sbjct: 61 GPTNPLLTDGGLSTVIAKPN-GAQGDFLSSSLGRWQNRGSNPDRSLILAFRTIANMADR 118
>gi|297818608|ref|XP_002877187.1| transcription factor IIB family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297323025|gb|EFH53446.1| transcription factor IIB family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 336
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 105/254 (41%), Positives = 148/254 (58%), Gaps = 10/254 (3%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES--SDHDPVR 58
M + C DCKR T V DHS+GDTICSECGLVLEA+ ++ + EWR FA++ SD DP R
Sbjct: 1 MEEETCLDCKRPTITVIDHSSGDTICSECGLVLEAHIIEYSEEWRTFASDDNRSDRDPNR 60
Query: 59 VGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKL---QARSSHPDRNLI-QAFKSIS 114
VG P NPLL G L TVI KP S+ + L L Q + + + +LI +AF+ I
Sbjct: 61 VGAPTNPLLKSGDLVTVIEKPKENISSVVSKDDLSTLCRAQNQLKNHEEDLIKKAFEEIQ 120
Query: 115 AMSDRLGLVTTIKDRANEIYKKV---EDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
++D L L + RA EI K + K RG+ A+ AA + +ACR+ RT+KE
Sbjct: 121 RITDALYLDIVVHSRACEIVSKFGGHANTKLRRGKTLYAVCAASVSMACRELKLSRTLKE 180
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQ-SVEMGTIHASDYLRRFCSNLGMTNQAVKA 230
VANG K+I ++ I + LE++ S I+ + +RRFCS L ++ + + A
Sbjct: 181 IAMVANGVELKDIRKSSMVIKRVLESDQASVSAAQAIINTGELVRRFCSKLDISQREIMA 240
Query: 231 AQEAVQKSEDLDIR 244
+EAV+K+E+ DIR
Sbjct: 241 IREAVEKAENFDIR 254
>gi|145353789|ref|XP_001421184.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581421|gb|ABO99477.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 390
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 97/227 (42%), Positives = 130/227 (57%), Gaps = 14/227 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH---DPVRVGGP 62
CA C R T +V DH++GD IC+ECGLV+E+ +DE SEWR F + D DP R G
Sbjct: 24 CAKCARHTAIVEDHASGDLICTECGLVIESRIIDECSEWRTFGDGDKDRGGADPSRTVGA 83
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGL 122
N +L+GGGLST I K G + +L +L R +PD+ LI AF SI +D +G+
Sbjct: 84 TNVMLTGGGLSTTIGKNPDG----TYNATLTRLHNRGMNPDKALISAFHSIGEFADAMGM 139
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
++D A ++Y+ V G++ A+ AACLYIA RQE RT KE C A GTT K
Sbjct: 140 NRVVRDGACDLYRMVTSAHSTLGKSNVAMYAACLYIAARQEGMTRTFKEVCGAAQGTTVK 199
Query: 183 EIGRAKEFIVK---HLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQ 226
EIGR +FI+K L +M + + I RFC NLGM++
Sbjct: 200 EIGRCYKFILKVCDGLNMQMNEQM----ITPELLTNRFCGNLGMSDH 242
>gi|66803286|ref|XP_635486.1| transcription initiation factor IIB [Dictyostelium discoideum AX4]
gi|74851622|sp|Q54FD6.1|TF2B_DICDI RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|60463804|gb|EAL61980.1| transcription initiation factor IIB [Dictyostelium discoideum AX4]
Length = 325
Score = 176 bits (447), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 148/243 (60%), Gaps = 15/243 (6%)
Query: 5 YCADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFAN-ESSDHDPVRVGGP 62
+C C+ + +++ D++ GD IC CG+V+ VDE SEWR F+N ES+ DP RVGGP
Sbjct: 22 WCMVCRIQDPDIIEDYAKGDLICRGCGVVVGDRIVDEHSEWRTFSNSESTGADPNRVGGP 81
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSS--HPDRNLIQAFKSISAMSDRL 120
+NPLL LST + K GS + SG+L +LQ +S+ DRNL+ AFK I M+D +
Sbjct: 82 INPLLRDSALSTTVGK----GSKD--SGTLTRLQNKSALGTGDRNLLAAFKEIGRMADHM 135
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
L T++DRANE+++ ++D+K +GR+ + +VAA LYIACRQE+ RT KE ++ N
Sbjct: 136 NLPQTVQDRANELFRFMDDKKSTKGRSVDGMVAAALYIACRQEHLSRTFKEIAALTN-VP 194
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
KKEI R K ++ + + TI + D+ RFCS L + N K A+ + + D
Sbjct: 195 KKEISRC----YKIMKETFASVLNLQTISSEDFTSRFCSTLKLPNDVKKGAEHVSKMAMD 250
Query: 241 LDI 243
+ I
Sbjct: 251 MGI 253
>gi|303284018|ref|XP_003061300.1| transcription initiation factor [Micromonas pusilla CCMP1545]
gi|226457651|gb|EEH54950.1| transcription initiation factor [Micromonas pusilla CCMP1545]
Length = 370
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 133/224 (59%), Gaps = 11/224 (4%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFAN-ESSDHDPVRVGGPLN 64
C +C T ++ DH GD +C+ECGLVLE +DETSEWR F++ + DP R GP N
Sbjct: 19 CKNCNVPTAIIEDHQQGDLVCTECGLVLEQGVIDETSEWRTFSDSDKGGADPSRTAGPTN 78
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
+L+ GGL T I + G + L+ +L R ++PD+ LI AF I+ ++D LG+ +
Sbjct: 79 RMLAHGGLGTSIGRNPDGTYNQTLT----RLHNRGANPDKALIAAFGKINELADHLGVTS 134
Query: 125 TIKDRANEIYKKVEDQKP---LRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
+KD A ++Y+ V KP + G++Q A+ AACLYI+CRQE RT KE C A TT
Sbjct: 135 VVKDGACDVYRMV--VKPGVSIAGKSQNAMFAACLYISCRQEGTNRTFKEICGGAVNTTV 192
Query: 182 KEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTN 225
KEIG+ +FIVK ++ + ++ I RFC NLG+ N
Sbjct: 193 KEIGKCYKFIVKTIDG-LNTTMMEQMITPEKLTNRFCGNLGLAN 235
>gi|330793157|ref|XP_003284652.1| hypothetical protein DICPUDRAFT_53091 [Dictyostelium purpureum]
gi|325085451|gb|EGC38858.1| hypothetical protein DICPUDRAFT_53091 [Dictyostelium purpureum]
Length = 353
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 146/243 (60%), Gaps = 15/243 (6%)
Query: 5 YCADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFAN-ESSDHDPVRVGGP 62
+C C+ +++ D++ GD IC ECG+V+ VDE SEWR F+N ES+ DP RVGGP
Sbjct: 47 WCKICRVNDPDIIEDYAKGDLICRECGVVVGDRIVDEHSEWRTFSNSESTGADPNRVGGP 106
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSS--HPDRNLIQAFKSISAMSDRL 120
+NPLL LST I K GS + S SL +LQ +S+ DRNL+ AFK I M+D +
Sbjct: 107 INPLLRDSALSTTIGK----GSRD--SSSLNRLQNKSALGTGDRNLLAAFKEIGRMADHM 160
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
L T++DRANE+++ ++D+K +GR+ + +VAA LYIACRQE+ RT KE ++ N
Sbjct: 161 NLPQTVQDRANELFRFMDDKKSTKGRSVDGMVAAALYIACRQEHLSRTFKEIAALTN-VP 219
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
KKEI R K ++ + + TI D+ RFCS L + + K ++ + + D
Sbjct: 220 KKEISRC----YKIMKETFSSVLNLQTISTEDFTSRFCSTLKLPIEVKKISEHVSKTAMD 275
Query: 241 LDI 243
+ I
Sbjct: 276 MGI 278
>gi|308811701|ref|XP_003083158.1| Transcription initiation factor IIB [Oryza sativa (ISS)
[Ostreococcus tauri]
gi|116055037|emb|CAL57433.1| Transcription initiation factor IIB [Oryza sativa (ISS)
[Ostreococcus tauri]
Length = 395
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 126/224 (56%), Gaps = 14/224 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH---DPVRVGGP 62
C C T +V DH++GD IC+ECGLV+E+ +DE SEWR F + D DP R G
Sbjct: 27 CPKCATHTAIVEDHASGDLICTECGLVIESRIIDECSEWRTFGDGDKDKNGADPSRTVGA 86
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGL 122
N +L+GGGLST I K G + +L +L R +PD+ LI AF SI +D +G+
Sbjct: 87 TNVMLTGGGLSTTIGKNPDG----TYNATLTRLHNRGMNPDKALIAAFHSIGEFADAMGM 142
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+KD A ++Y+ V G++ A+ AACLYIA RQE RT KE C A GTT K
Sbjct: 143 NRVVKDGACDLYRMVTSAHSTLGKSNAAMYAACLYIAARQEGMTRTFKEVCGAAQGTTVK 202
Query: 183 EIGRAKEFIVK---HLEAEMGQSVEMGTIHASDYLRRFCSNLGM 223
EIGR +FI+K L +M + + I RFC NLG+
Sbjct: 203 EIGRCYKFILKVCDGLNMQMNEQM----ITPELLTNRFCGNLGI 242
>gi|355745435|gb|EHH50060.1| hypothetical protein EGM_00825 [Macaca fascicularis]
Length = 296
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 93/206 (45%), Positives = 127/206 (61%), Gaps = 7/206 (3%)
Query: 38 VDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQA 97
+D SEWR F+N+ + DP RVG NPLLS G LST+I K T S + S + +
Sbjct: 26 IDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRR 85
Query: 98 RSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLY 157
S DR ++ AFK I+ M+DR+ L I DR N ++K+V +QK L+GR +AI +ACLY
Sbjct: 86 TMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLY 145
Query: 158 IACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRF 217
IACRQE PRT KE C+V+ +KKEIGR + I+K LE SV++ I D++ RF
Sbjct: 146 IACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKALET----SVDL--ITTGDFMSRF 198
Query: 218 CSNLGMTNQAVKAAQEAVQKSEDLDI 243
CSNL + Q AA +K+ +LD+
Sbjct: 199 CSNLCLPKQVQMAATHIARKAVELDL 224
>gi|444512968|gb|ELV10226.1| Transcription initiation factor IIB [Tupaia chinensis]
Length = 298
Score = 170 bits (430), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 93/206 (45%), Positives = 127/206 (61%), Gaps = 7/206 (3%)
Query: 38 VDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQA 97
+D SEWR F+N+ + DP RVG NPLLS G LST+I K T S + S + +
Sbjct: 28 IDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRR 87
Query: 98 RSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLY 157
S DR ++ AFK I+ M+DR+ L I DR N ++K+V +QK L+GR +AI +ACLY
Sbjct: 88 TMSSSDRAMMNAFKEITTMADRINLPRNIIDRTNNLFKQVYEQKSLKGRANDAIASACLY 147
Query: 158 IACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRF 217
IACRQE PRT KE C+V+ +KKEIGR + I+K LE SV++ I D++ RF
Sbjct: 148 IACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKALET----SVDL--ITTGDFMSRF 200
Query: 218 CSNLGMTNQAVKAAQEAVQKSEDLDI 243
CSNL + Q AA +K+ +LD+
Sbjct: 201 CSNLCLPKQVQMAATHIARKAVELDL 226
>gi|440491617|gb|ELQ74241.1| Transcription initiation factor TFIIB [Trachipleistophora hominis]
Length = 305
Score = 170 bits (430), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 138/239 (57%), Gaps = 21/239 (8%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
+C DC+ + D G +C+ CG ++E +DE +EWR F + S +DP RVGGP N
Sbjct: 11 FCRDCQSDQYITDDTKTGAVLCTNCGCIIENTLIDEKTEWRTF--DDSANDPSRVGGPNN 68
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSH--PDRNLIQAFKSISAMSDRLGL 122
PLL L T+IA L S +L + Q +S+ P+R LI F ISA DR +
Sbjct: 69 PLLGTEPLDTMIA-----NIGNLHSYTLNRTQMKSTMRGPERQLINGFNLISAYCDRSNI 123
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
TI DRA I+K+V+++K L+G+N E +VAAC+YIACRQE PRT KE SV KK
Sbjct: 124 SKTISDRAKLIFKRVDEKKILKGKNLEGVVAACIYIACRQEQSPRTFKEV-SVLTAVPKK 182
Query: 183 EIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCS--NLGMTNQ--AVKAAQEAVQK 237
EIGR+ + I H+E ++ + D + RFCS NLG+ Q AV+ ++ ++K
Sbjct: 183 EIGRSFKLIFPHIE-------KLQCVTTDDIVARFCSDLNLGIDVQKIAVQISKNVIEK 234
>gi|417409265|gb|JAA51147.1| Putative transcription initiation factor tfiib, partial [Desmodus
rotundus]
Length = 276
Score = 169 bits (429), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 127/206 (61%), Gaps = 7/206 (3%)
Query: 38 VDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQA 97
+D SEWR F+N+ + DP RVG NPLLS G LST+I K T S + S + +
Sbjct: 6 IDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRR 65
Query: 98 RSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLY 157
S DR ++ AF+ I+ M+DR+ L I DR N ++K+V +QK L+GR +AI +ACLY
Sbjct: 66 TMSSSDRAMMNAFREITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLY 125
Query: 158 IACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRF 217
IACRQE PRT KE C+V+ +KKEIGR + I+K LE SV++ I D++ RF
Sbjct: 126 IACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKALET----SVDL--ITTGDFMSRF 178
Query: 218 CSNLGMTNQAVKAAQEAVQKSEDLDI 243
CSNL + Q AA +K+ +LD+
Sbjct: 179 CSNLCLPKQVQMAATHIARKAVELDL 204
>gi|308506715|ref|XP_003115540.1| hypothetical protein CRE_18811 [Caenorhabditis remanei]
gi|308256075|gb|EFP00028.1| hypothetical protein CRE_18811 [Caenorhabditis remanei]
Length = 306
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 137/230 (59%), Gaps = 11/230 (4%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ DH AGD +C CGLV+ VD +EWR F+NE S +DP RVG P +P LSGG LST
Sbjct: 15 LIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNEKSGNDPSRVGAPESPYLSGGDLST 74
Query: 75 VIAKPTAGGSTELLSGSLGKLQARS-SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEI 133
IA G ++ +L Q ++ ++ DR + A I MS+R+ L I++ A +
Sbjct: 75 SIAVGFGGSDSD---NTLANAQRKTMNNTDRQMTTAMNLIREMSERVHLPRNIQESAFRM 131
Query: 134 YKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
+K+V D LRG+N EA AACLYIACRQ+ PRT KE C+++ +KKEIGR + IV+
Sbjct: 132 FKEVLDSGVLRGKNIEAQAAACLYIACRQDGVPRTFKEICAISR-VSKKEIGRCFKIIVR 190
Query: 194 HLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
+ S + + ++D++ RFC NL + N AA +++ D+D+
Sbjct: 191 N------SSTNLEHVTSADFMSRFCGNLYLPNSIQAAATRIAKRAVDMDL 234
>gi|256082789|ref|XP_002577635.1| transcription initiation factor iib [Schistosoma mansoni]
gi|353230219|emb|CCD76390.1| putative transcription initiation factor iib [Schistosoma mansoni]
Length = 308
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 96/233 (41%), Positives = 140/233 (60%), Gaps = 13/233 (5%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D AGD +CS CGLV+ +D SEWR F+N+++ D RVG N LL GG LST
Sbjct: 14 LIEDSHAGDMVCSMCGLVVADRVIDVGSEWRTFSNDANAKDMCRVGATENFLLDGGDLST 73
Query: 75 VIAKPTAGGSTELLSGSLGKLQARS----SHPDRNLIQAFKSISAMSDRLGLVTTIKDRA 130
+I+ P+ S +L GK R+ S PDR L+ AF+ IS M + L L +I D A
Sbjct: 74 MISGPSPSDSRQL--DEHGKPMYRNRRNISAPDRVLLSAFREISQMGEHLNLPKSISDHA 131
Query: 131 NEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEF 190
N ++K+V + K LRGR+ +A+ ACLY+ACRQE PRT KE C+V+ +KKEIG+ +
Sbjct: 132 NLLFKQVHETKNLRGRSNDAVSTACLYMACRQEGVPRTFKEVCAVSR-VSKKEIGKVFKK 190
Query: 191 IVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
I+K LE + QSV + D++ RFC NL + + A +++ +L++
Sbjct: 191 ILKILETNV-QSVTV-----EDFMSRFCGNLNLNIAVQRVANVVARRALNLNL 237
>gi|313221394|emb|CBY32147.1| unnamed protein product [Oikopleura dioica]
gi|313236423|emb|CBY11740.1| unnamed protein product [Oikopleura dioica]
Length = 314
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 97/228 (42%), Positives = 136/228 (59%), Gaps = 11/228 (4%)
Query: 18 DHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGG--LSTV 75
D+ AGD IC+ECGLV+ +D SEWR F+N+S D RVG N LS G LST+
Sbjct: 24 DYRAGDMICTECGLVVGDRVIDVGSEWRTFSNDSGSKDRSRVGDVENRFLSNSGSDLSTM 83
Query: 76 IAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYK 135
IA PT G T +L + + DR L A++ I AM+DR+ ++ DRA +K
Sbjct: 84 IAAPTNGAETAF--SNLSHHRRHMNAADRALSAAYREIGAMADRMNFPGSLVDRAKVNFK 141
Query: 136 KVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHL 195
+ + + L+GR+ +AI AACLYIACRQE PRT KE C+V KKEIGR + I+K L
Sbjct: 142 EAYESRQLKGRSNDAIAAACLYIACRQEGVPRTFKEICAVCT-VPKKEIGRCFKLIIKTL 200
Query: 196 EAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
E +SV + I + D+++RFC++L + Q A+ +KS +LD+
Sbjct: 201 E----KSVNV--ITSEDFMKRFCNSLRLNRQVEAASIHIAKKSVELDL 242
>gi|429964420|gb|ELA46418.1| hypothetical protein VCUG_02096 [Vavraia culicis 'floridensis']
Length = 305
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 137/239 (57%), Gaps = 21/239 (8%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
+C DC+ + D G +C+ CG ++E +DE +EWR F + S +DP RVG P N
Sbjct: 11 FCRDCQSDQYITDDTKTGAVLCTNCGCIIENTLIDEKTEWRTF--DDSANDPSRVGCPNN 68
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSH--PDRNLIQAFKSISAMSDRLGL 122
PLL L T+IA L S +L + Q +S+ P+R LI F ISA DR +
Sbjct: 69 PLLESEPLDTMIA-----NIGNLHSYTLNRTQMKSTMRGPERQLINGFNLISAYCDRSNI 123
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
TI DRA I+K+V+++K L+G+N E +VAAC+YIACRQE PRT KE SV KK
Sbjct: 124 SKTISDRAKLIFKRVDEKKILKGKNLEGVVAACIYIACRQEQSPRTFKEV-SVLTAVPKK 182
Query: 183 EIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCS--NLGMTNQ--AVKAAQEAVQK 237
EIGR+ + I H+E ++ + D + RFCS NLG+ Q AV+ ++ ++K
Sbjct: 183 EIGRSFKLIFPHIE-------KLQCVTTDDIVARFCSDLNLGIDVQKIAVQISKNVIEK 234
>gi|21363041|sp|Q9NHP7.1|TF2B_DROVI RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|8050578|gb|AAF71709.1| transcription factor TFIIB [Drosophila virilis]
Length = 293
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 100/234 (42%), Positives = 138/234 (58%), Gaps = 35/234 (14%)
Query: 13 TEVVFDHSAGDTICSECGLVL-EAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGG 71
+ ++ D+ AGD ICSECGLV+ +A+ GGP NPLLSGG
Sbjct: 20 SPLIEDYRAGDMICSECGLVVGDAF-----------------------GGPENPLLSGGH 56
Query: 72 LSTVIAKPTAGGSTELLSGS--LGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDR 129
LST+I T S + + RSS DR+LI AFK IS+M+DR+ L TI DR
Sbjct: 57 LSTIIGPGTGSASFDAFGAPKYPNRRTMRSS--DRSLISAFKEISSMADRINLPKTIVDR 114
Query: 130 ANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKE 189
AN ++K+V D K L+GR+ +A +ACLYIACRQE PRT KE C+V+ +KKEIGR +
Sbjct: 115 ANTLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFK 173
Query: 190 FIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
+K LE SV++ I +D++ RFC+NL + N +AA +K+ ++DI
Sbjct: 174 LTLKALET----SVDL--ITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDI 221
>gi|357116811|ref|XP_003560170.1| PREDICTED: transcription initiation factor IIB-like [Brachypodium
distachyon]
Length = 332
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 108/270 (40%), Positives = 154/270 (57%), Gaps = 33/270 (12%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES----SDHDPVRVG 60
YC C+R+T V + ++GDT+C+EC LVL+ VDE+ EWR F N +D P +
Sbjct: 11 YCKGCRRVTTVTVNPASGDTVCTECSLVLKERYVDESLEWRNFLNHGPAAPADKSPSHID 70
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGS-TEL---------LSGSLGKLQARSSHPDRNLIQAF 110
+ L+ L T +A P G + T++ + G A ++ P+R L +AF
Sbjct: 71 ---DHFLTNLQLGTAVAGPATGNAETDVALPRKRGGGVPKKRGAAAAAAAAPNRTLAEAF 127
Query: 111 KSISAMSDRLGLVTTIKDRANEIYKKVEDQK--PLRG--RNQEAIVAACLYIACRQENKP 166
+++ M++RLGL T +KDRA E+ +K+ED K P G RN+ A+ AACL++ACR E P
Sbjct: 128 QAMDGMAERLGLATAVKDRAKEVLRKLEDAKAFPKGGKCRNRLALYAACLHVACRAEGTP 187
Query: 167 RTVKEFCSVANGTTK---KEIGRAKEFIVKHLE-----AEMGQ--SVEMGT-IHASDYLR 215
T KE SV + K+IGR + I HLE AE Q ++EMG + A DYL
Sbjct: 188 LTFKELASVTGDSVTAGMKDIGRLVKHIRNHLEDQDQDAEGTQAATLEMGAVVRAGDYLC 247
Query: 216 RFCSNLGMTNQAVKAAQEAVQKSE-DLDIR 244
RF S LGM + + AAQEAV++ E DLD+R
Sbjct: 248 RFGSLLGMGQEELHAAQEAVRRLEKDLDVR 277
>gi|430811796|emb|CCJ30774.1| unnamed protein product [Pneumocystis jirovecii]
Length = 337
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 132/244 (54%), Gaps = 19/244 (7%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C DCK +V + S+GDT+C CGLV+ VD SEWR FAN+ + RVG N
Sbjct: 24 CPDCKEDPPNLVEEFSSGDTVCGSCGLVVGDRIVDTRSEWRTFANDEGGDNQSRVGSSAN 83
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGL 122
PLL+G L T+I+ G L K Q RS +RNL+ A++ ISAM D + L
Sbjct: 84 PLLNGSQLDTIISTQDGGHG-------LSKTQGRSVVQKGERNLMSAYREISAMCDAIHL 136
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+I D A +++K+V+D K L+GR+ E+I++AC++IACRQ PRT KE C++ N KK
Sbjct: 137 PKSISDIAKQVFKRVDDSKALKGRSNESIISACIFIACRQGKAPRTFKEICTLTN-VPKK 195
Query: 183 EIGRAKEFIVKHL--------EAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
EIGR + + K L + S + D + RFC+ L + AA E
Sbjct: 196 EIGRVFKSLQKMLTDNNILDNTGKTDDSYVPSSTSPKDLMVRFCNRLSLPTSVQIAASEL 255
Query: 235 VQKS 238
++
Sbjct: 256 ASRA 259
>gi|256082791|ref|XP_002577636.1| transcription initiation factor IIB (TFIIB) [Schistosoma mansoni]
gi|353230220|emb|CCD76391.1| putative transcription initiation factor IIB (TFIIB) [Schistosoma
mansoni]
Length = 286
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 134/223 (60%), Gaps = 13/223 (5%)
Query: 25 ICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGS 84
+CS CGLV+ +D SEWR F+N+++ D RVG N LL GG LST+I+ P+ S
Sbjct: 2 VCSMCGLVVADRVIDVGSEWRTFSNDANAKDMCRVGATENFLLDGGDLSTMISGPSPSDS 61
Query: 85 TELLSGSLGKLQARS----SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQ 140
+L GK R+ S PDR L+ AF+ IS M + L L +I D AN ++K+V +
Sbjct: 62 RQL--DEHGKPMYRNRRNISAPDRVLLSAFREISQMGEHLNLPKSISDHANLLFKQVHET 119
Query: 141 KPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMG 200
K LRGR+ +A+ ACLY+ACRQE PRT KE C+V+ +KKEIG+ + I+K LE +
Sbjct: 120 KNLRGRSNDAVSTACLYMACRQEGVPRTFKEVCAVSR-VSKKEIGKVFKKILKILETNV- 177
Query: 201 QSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
QSV + D++ RFC NL + + A +++ +L++
Sbjct: 178 QSVTV-----EDFMSRFCGNLNLNIAVQRVANVVARRALNLNL 215
>gi|421975925|gb|AFX72995.1| Transcription factor IIB [Spirometra erinaceieuropaei]
Length = 286
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 130/221 (58%), Gaps = 9/221 (4%)
Query: 25 ICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGS 84
+CS CGLV+ +D SEWR F+N+++ D RVG NPL G LST+I+ P+
Sbjct: 2 VCSLCGLVVADRIIDVGSEWRTFSNDANAKDNSRVGAAENPLFEGKDLSTMISAPSRSDP 61
Query: 85 TEL--LSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKP 142
L L + + S PDR LI AF+ IS M++RL L TI DRAN ++K+V + +
Sbjct: 62 RHLDDQGRPLYRNKRSVSGPDRALITAFREISQMAERLNLPKTISDRANLLFKQVYETRN 121
Query: 143 LRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQS 202
LRGR+ +A+ ACLY+ACRQE PRT KE C+V+ +KKEIG+ + I+ LE
Sbjct: 122 LRGRSNDAVSTACLYMACRQEKVPRTFKEVCAVSK-VSKKEIGKVFKKILNILE------ 174
Query: 203 VEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
+ + D++ RFC+NL + + A +++ +L++
Sbjct: 175 TNVQAVSVDDFMSRFCANLHLNITVQQVANVVARRALNLNL 215
>gi|226482608|emb|CAX73903.1| Transcription factor IIB [Schistosoma japonicum]
Length = 286
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 134/223 (60%), Gaps = 13/223 (5%)
Query: 25 ICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGS 84
+CS CGLV+ +D SEWR F+N+++ D RVG N LL GG LST+I+ P+ S
Sbjct: 2 VCSMCGLVVADRVIDVGSEWRTFSNDANAKDMCRVGAGENFLLDGGDLSTMISGPSPSDS 61
Query: 85 TELLSGSLGKLQARS----SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQ 140
+L GK R+ S PDR L+ AF+ IS M + L L +I D AN ++K+V +
Sbjct: 62 RQLDEN--GKPMYRNRRNMSAPDRVLLSAFREISQMGEHLNLPKSISDHANLLFKQVHET 119
Query: 141 KPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMG 200
K LRGR+ +A+ ACLY+ACRQE PRT KE C+V+ +KKEIG+ + I+K LE +
Sbjct: 120 KNLRGRSNDAVSTACLYMACRQEGVPRTFKEVCAVSR-VSKKEIGKVFKKILKILETNV- 177
Query: 201 QSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
QSV + D++ RFC NL + + A +++ +L++
Sbjct: 178 QSVTV-----EDFMSRFCGNLNLNITVQRVANVVARRALNLNL 215
>gi|307106611|gb|EFN54856.1| hypothetical protein CHLNCDRAFT_24273 [Chlorella variabilis]
Length = 333
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/227 (40%), Positives = 136/227 (59%), Gaps = 9/227 (3%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANE--SSDHDPVRVGGPL 63
C DC + ++ V DH++GD +C CG+V+EA+ +DE SEWR FA++ S DP RVGGP+
Sbjct: 16 CPDCGQ-SDFVEDHASGDLVCRNCGVVVEAHVIDERSEWRTFADKVHSGGSDPNRVGGPV 74
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSS-HPDRNLIQAFKSISAMSDRLGL 122
N LLS GG+ST+I G L+ + G A DR +I AF+ I + + L
Sbjct: 75 NHLLSDGGMSTMIGG-GKGVDHALVREAGGCWPAGDGVTTDRAVIAAFREIGKICAAMKL 133
Query: 123 VTTIKDRANEIYKKVEDQ-KPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
+ T+K +A E YK+ D K ++G++Q A++AA +++ACR PRT KE C+V +
Sbjct: 134 LDTVKKQAEEFYKQAYDNAKSIKGKSQAAVLAAIVFLACRHTGNPRTFKEICAVVPQASV 193
Query: 182 KEIGRAKEFIVKHLEAE--MGQSVEMGTIHASDYLRRFCSNLGMTNQ 226
KEIGR + +V+ L+ E +G G+ H Y+RRF S L MT +
Sbjct: 194 KEIGRIYKSVVRELKLEEALGNKQLEGS-HPHSYMRRFMSQLSMTPK 239
>gi|340728624|ref|XP_003402619.1| PREDICTED: transcription initiation factor IIB-like, partial
[Bombus terrestris]
Length = 176
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/154 (51%), Positives = 101/154 (65%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD ICSECGLV+ +D SEWR F+NE + DP RVGGP NPLL+G LST
Sbjct: 22 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGGPENPLLNGSDLST 81
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I T S + S + + S DR LI AF+ I+ M+DR+ L TI DRAN ++
Sbjct: 82 MIGPGTGAASFDAFGASKYQNRRTMSSSDRALINAFREINGMADRINLPKTIVDRANNLF 141
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT 168
K+V D K L+GR +AI +ACLYIACRQE PRT
Sbjct: 142 KQVHDGKNLKGRANDAIASACLYIACRQEGVPRT 175
>gi|303389676|ref|XP_003073070.1| transcription initiation factor TFIIB subunit Brf1 [Encephalitozoon
intestinalis ATCC 50506]
gi|303302214|gb|ADM11710.1| transcription initiation factor TFIIB subunit Brf1 [Encephalitozoon
intestinalis ATCC 50506]
Length = 312
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 130/238 (54%), Gaps = 16/238 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DC +V D+ G +C CG ++ +DE SEWR F +S+ DP R+G NP
Sbjct: 14 CTDCGETQNIVEDYKNGYHVCGRCGCIVGNRIIDEGSEWRSFG-DSNKVDPCRIGSASNP 72
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSH--PDRNLIQAFKSISAMSDRLGLV 123
L L T+I+ T GG + L K+Q ++S P+R L I+A +R L
Sbjct: 73 YLESEQLDTIIS--TGGGMNSYM---LSKIQMKNSMRGPERALKHGMNLITAFCERSNLS 127
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI DRA+ I+K +E++K L+G+N E IVAAC+YIACRQE PRT KE SV K+E
Sbjct: 128 RTIIDRAHYIFKNIEERKLLKGKNVEGIVAACIYIACRQEECPRTFKEI-SVMTAVQKRE 186
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDL 241
IGR + I HLE M T+ + + RFCS+L + + K A E + + +L
Sbjct: 187 IGRCFKLISPHLE-------RMATMSTENIIARFCSDLNLNIKIQKIATEIAKAAHEL 237
>gi|209735698|gb|ACI68718.1| Transcription initiation factor IIB [Salmo salar]
Length = 224
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/162 (48%), Positives = 103/162 (63%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F NE + DP RVG NPLL+GG LST
Sbjct: 25 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFTNEKATQDPSRVGDAQNPLLNGGDLST 84
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I+K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 85 MISKGTGAASFDEFGNSKYQNRRTMSSSDRAMLNAFKEITTMADRINLPRNIIDRTNNLF 144
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVA 176
K+V +QK L+GR +AI +ACLYIACRQE PRT KE +A
Sbjct: 145 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEIGDIA 186
>gi|337263062|gb|AEI69242.1| transcription initiation factor TFIIB [Encephalitozoon romaleae]
gi|396081581|gb|AFN83197.1| transcription initiation factor TFIIB subunit Brf1 [Encephalitozoon
romaleae SJ-2008]
Length = 312
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/238 (38%), Positives = 132/238 (55%), Gaps = 16/238 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C+DC ++ D+ G +C CG ++ +DE SEWR F +S+ DP R+G NP
Sbjct: 14 CSDCGETQNIIEDYKNGYHVCGRCGCIVGNRIIDEGSEWRSFG-DSNKVDPCRIGSASNP 72
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSH--PDRNLIQAFKSISAMSDRLGLV 123
L L T+I+ T GG + L K+Q ++S P+R L I+A +R L
Sbjct: 73 YLESEQLDTMIS--TGGGVNSYM---LSKIQMKNSMRGPERALKHGMNLITAFCERSNLS 127
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI DRA+ I+K +E++K L+G+N E IVAAC+YIACRQE PRT KE SV K+E
Sbjct: 128 RTIIDRAHYIFKNIEERKLLKGKNVEGIVAACMYIACRQEECPRTFKEI-SVMTAVQKRE 186
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDL 241
IGR + I HLE M T+ + + RFCS+L ++ + K A E + + +L
Sbjct: 187 IGRCFKLISPHLE-------RMATMSTENIIARFCSDLNLSIKIQKIATEIAKAAHEL 237
>gi|401826726|ref|XP_003887456.1| transcription initiation factor TFIIIB subunit Brf1
[Encephalitozoon hellem ATCC 50504]
gi|337263124|gb|AEI69273.1| transcription initiation factor TFIIB [Encephalitozoon hellem]
gi|395459974|gb|AFM98475.1| transcription initiation factor TFIIIB subunit Brf1
[Encephalitozoon hellem ATCC 50504]
Length = 312
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 131/238 (55%), Gaps = 16/238 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C+DC ++ D+ G +C CG V+ +DE SEWR F +S+ DP R+G NP
Sbjct: 14 CSDCGETQNIIEDYKNGYHVCGRCGCVVGNRIIDEGSEWRSFG-DSNKVDPCRIGSASNP 72
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSH--PDRNLIQAFKSISAMSDRLGLV 123
L L T+I+ T GG + L K+Q ++S P+R L I+A +R L
Sbjct: 73 YLESEQLDTMIS--TGGGMNSYM---LSKIQMKNSMRGPERALKHGMNLITAFCERSNLS 127
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI DRA+ I+K +E++K L+G+N E IVAAC+YIACRQE PRT KE SV K+E
Sbjct: 128 RTIIDRAHYIFKNIEERKLLKGKNVEGIVAACIYIACRQEECPRTFKEI-SVMTAVQKRE 186
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDL 241
IGR + I HLE M T+ + + RFCS+L + + K A E + + +L
Sbjct: 187 IGRCFKLISPHLE-------RMATMSTENIIARFCSDLNLNIKIQKIATEIAKAAHEL 237
>gi|19074360|ref|NP_585866.1| TRANSCRIPTION INITIATION FACTOR TFIIB [Encephalitozoon cuniculi
GB-M1]
gi|51702029|sp|Q8SRP3.1|TF2B_ENCCU RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|19069002|emb|CAD25470.1| TRANSCRIPTION INITIATION FACTOR TFIIB [Encephalitozoon cuniculi
GB-M1]
gi|449329432|gb|AGE95704.1| transcription initiation factor TFIIB [Encephalitozoon cuniculi]
Length = 312
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 132/238 (55%), Gaps = 16/238 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C+DC +V D+ G +C CG ++ +DE SEWR F +S+ DP R+G NP
Sbjct: 14 CSDCGETQNIVEDYKNGYHVCGRCGCIVGNRIIDEGSEWRSFG-DSNKVDPCRIGSASNP 72
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSH--PDRNLIQAFKSISAMSDRLGLV 123
L L T+I+ T GG + S L K+Q ++S P+R L I+A +R L
Sbjct: 73 YLESEQLDTMIS--TGGG---MNSYVLSKIQMKNSMRGPERALKHGMNLITAFCERSNLS 127
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI DRA+ I+K +E++K L+G+N E IVAAC+YIACRQE PRT KE SV K+E
Sbjct: 128 RTIIDRAHYIFKNIEERKLLKGKNVEGIVAACIYIACRQEECPRTFKEI-SVMTAVQKRE 186
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDL 241
IGR + I HLE M T+ + + RFCS+L + + K A E + + +L
Sbjct: 187 IGRCFKLISPHLE-------RMATMSTENIIARFCSDLNLNIKIQKIATEIAKAAHEL 237
>gi|159466284|ref|XP_001691339.1| hypothetical protein CHLREDRAFT_115221 [Chlamydomonas reinhardtii]
gi|158279311|gb|EDP05072.1| predicted protein [Chlamydomonas reinhardtii]
Length = 312
Score = 157 bits (396), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 87/188 (46%), Positives = 119/188 (63%), Gaps = 8/188 (4%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH-DPVRV 59
M +C C+ V F S GD +C +CG V E+ +DE SEWR F+++ D DP RV
Sbjct: 1 MDTEFCITCRGDDFVEF-KSEGDLVCRKCGTVKESRLIDERSEWRTFSDKDKDTTDPNRV 59
Query: 60 GGPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDR 119
GGP N LL G L+T I + G LS +L ++ AR+++PDR L+ AFK + M D
Sbjct: 60 GGPTNHLLEG--LTTTIGRERNDGG---LSYALNRIHARTNNPDRLLVNAFKEVGRMCDL 114
Query: 120 LGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS-VANG 178
LG+ +KDRA EIYK+V + K L+GR+ +A+ A+CL+ ACRQE +PRT KE S + N
Sbjct: 115 LGVRGAVKDRACEIYKEVVEAKSLKGRSVKALAASCLFWACRQEKQPRTFKEIVSCLGND 174
Query: 179 TTKKEIGR 186
+KKEIGR
Sbjct: 175 VSKKEIGR 182
>gi|213404006|ref|XP_002172775.1| transcription factor TFIIB [Schizosaccharomyces japonicus yFS275]
gi|212000822|gb|EEB06482.1| transcription factor TFIIB [Schizosaccharomyces japonicus yFS275]
Length = 339
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/233 (39%), Positives = 135/233 (57%), Gaps = 22/233 (9%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFAN-ESSDHDPVRVGGPL 63
C++C+ +V + S+GDT+C CGLVL VD SEWR F+N + ++ DP RVG
Sbjct: 20 CSECREDPPNLVEEFSSGDTVCGSCGLVLGDRIVDTRSEWRTFSNSDEANGDPSRVGKVA 79
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSH--PDRNLIQAFKSISAMSDRLG 121
NPLL+G L T I+ ST+ L K Q RS ++NL+ A+K ISAM D +
Sbjct: 80 NPLLNGSQLDTSIS------STDGTGAMLAKAQGRSVQVRGEKNLLTAYKEISAMCDAIS 133
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L I D A +++K+V+D K L+G++ ++I+AAC+YIACRQ PRT E C++ N K
Sbjct: 134 LPKVIADTAKQLFKRVDDHKALKGKSSQSIIAACIYIACRQGKVPRTFMEICTLTN-VAK 192
Query: 182 KEIGRAKEFIVKHL----------EAEMGQS-VEMGTIHASDYLRRFCSNLGM 223
KEIGR + + + L +A GQ ++ + A D + RFC+ L +
Sbjct: 193 KEIGRVYKTLQRMLTEGGALHNSVDAFKGQEYIQNSSTSAEDLMVRFCNRLQL 245
>gi|358336173|dbj|GAA33522.2| transcription initiation factor TFIIB [Clonorchis sinensis]
Length = 284
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 133/221 (60%), Gaps = 9/221 (4%)
Query: 25 ICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGS 84
+CS CGLV+ +D SEWR F+N+++ D RVG NPLLSG LST+I+ P+ S
Sbjct: 2 VCSMCGLVVADRVIDVGSEWRTFSNDANAKDMCRVGSSENPLLSGSDLSTMISGPSFSDS 61
Query: 85 TEL--LSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKP 142
++ +L K + S DR L AF+ I M++ L L +I D AN ++K+V + K
Sbjct: 62 RQVDDQGKALYKSRRHLSSADRVLTGAFREIGQMAEHLNLPKSISDHANLLFKQVYETKN 121
Query: 143 LRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQS 202
LRGR+ +A+ ACLY+ACRQE PRT KE C+V+ +KKEIG+ + I+K LE + QS
Sbjct: 122 LRGRSNDAVSTACLYMACRQEGVPRTFKEVCAVSR-VSKKEIGKVFKKILKILETNV-QS 179
Query: 203 VEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
V + D++ RFC NL + + A +++ +L++
Sbjct: 180 VTV-----EDFMSRFCGNLNLNIAVQRVANVVARRALNLNL 215
>gi|19115141|ref|NP_594229.1| transcription factor TFIIB [Schizosaccharomyces pombe 972h-]
gi|21362985|sp|O13749.1|TF2B_SCHPO RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|2330704|emb|CAB11044.1| transcription factor TFIIB [Schizosaccharomyces pombe]
Length = 340
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/248 (37%), Positives = 137/248 (55%), Gaps = 22/248 (8%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFAN-ESSDHDPVRVGGPL 63
C++C+ +V + S+GDT+C CGLVL +D SEWR F+N + + DP RVG
Sbjct: 20 CSECREDPPNLVEEFSSGDTVCGSCGLVLGDRIIDTRSEWRTFSNSDEASGDPSRVGKVA 79
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSH--PDRNLIQAFKSISAMSDRLG 121
NPLL+G L T I+ G+ L K Q RS ++NL+ A+K I AM D +
Sbjct: 80 NPLLNGSQLDTTISSYDGAGAM------LAKAQGRSVQVRGEKNLLTAYKEIGAMCDAIS 133
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L I D A ++YK+V+D K L+G++ ++I+AAC+YIACRQ PRT E C++ N K
Sbjct: 134 LPKVIADTAKQLYKRVDDHKALKGKSSQSIIAACIYIACRQGKVPRTFMEICTLTN-VPK 192
Query: 182 KEIGRAKEFIVKHL----------EAEMGQS-VEMGTIHASDYLRRFCSNLGMTNQAVKA 230
KEIGR + + + L +A G ++ + A D + RFC+ L + A
Sbjct: 193 KEIGRVYKTLQRMLTEGGALHNSVDALKGHEYIQSSSTSAEDLMVRFCNRLMLPMSVQSA 252
Query: 231 AQEAVQKS 238
A E +++
Sbjct: 253 AAELARRA 260
>gi|414872963|tpg|DAA51520.1| TPA: hypothetical protein ZEAMMB73_142786, partial [Zea mays]
Length = 98
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 72/98 (73%), Positives = 82/98 (83%), Gaps = 1/98 (1%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+DSYC DCK+ TEV FDHSAGDT+C+ECGLVLEA+SVDETSEWR F NES+D+DPVRVG
Sbjct: 1 MSDSYCPDCKKQTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFTNESNDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR 98
GP NPLL+ GGLSTVIAKP G + LS SLG+ Q R
Sbjct: 61 GPSNPLLTDGGLSTVIAKPN-GAQGDFLSSSLGRWQNR 97
>gi|321470098|gb|EFX81075.1| hypothetical protein DAPPUDRAFT_50412 [Daphnia pulex]
Length = 324
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/211 (41%), Positives = 128/211 (60%), Gaps = 8/211 (3%)
Query: 17 FDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVI 76
+D+ + D IC+ECG+V++ D SEWR F+ E+ + DP ++G N LL G L+T+
Sbjct: 25 YDYRSSDQICTECGVVVKDRVDDVGSEWRTFSYEAGNVDPSQIGEEENTLLDGSNLTTIF 84
Query: 77 AKPTAGGSTEL-LSG-SLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
T+GG + + SG +LG+ + R S D+ L+ A+ IS M+ + L T+ DRAN
Sbjct: 85 GPSTSGGGSLINESGEALGRKKKRQTMSSSDQTLVSAYNEISNMAVNINLPRTVVDRANC 144
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K V D K L+G + +AI + CLYIACRQE PRT KE C++ KKE+GR + I
Sbjct: 145 LFKNVHDGKHLKGHSTKAIASTCLYIACRQEGVPRTFKEICALTK-IDKKELGRCYKLIP 203
Query: 193 KHLEAEMGQSVEMGTIHASDYLRRFCSNLGM 223
K LE + + I SD++ RFCSNLGM
Sbjct: 204 KALETSVDV---IPRITTSDFIPRFCSNLGM 231
>gi|47156969|gb|AAT12348.1| transcription initiation factor TFIIB [Antonospora locustae]
Length = 306
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/240 (39%), Positives = 130/240 (54%), Gaps = 16/240 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DC ++ D+ AG +CS CG V+ +DE SEWR F++ ++ + RVG NP
Sbjct: 8 CKDCGESRNIIEDYKAGYNVCSNCGCVIGNRIIDEGSEWRNFSDANAP-NLSRVGSANNP 66
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSH--PDRNLIQAFKSISAMSDRLGLV 123
LL T+I+ + +L K Q RSS P++ LI F ISA+ DR +
Sbjct: 67 LLDAETYDTIISTERSS-----FGVNLSKTQMRSSMRGPEQALINGFNLISALCDRANMT 121
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI DRA +K VE++K + ++ + VAAC+YIACRQE PRT KE SV +K+
Sbjct: 122 KTICDRAKFNFKAVEEKKIAKSKSHKGTVAACIYIACRQEGCPRTFKEI-SVLTAVPRKD 180
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
IGRA + I HLE + SV+ D + RFCSNL + + A K A Q + LDI
Sbjct: 181 IGRAYKIIYPHLEKFVAVSVK-------DIVSRFCSNLDLGHDAEKLAVAIAQNVQRLDI 233
>gi|387596531|gb|EIJ94152.1| transcription initiation factor TFIIB [Nematocida parisii ERTm1]
Length = 312
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/236 (37%), Positives = 128/236 (54%), Gaps = 17/236 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DCK+ ++ D+ G +C CG ++ + +DE EWR F++ S +P RVGGP NP
Sbjct: 15 CPDCKKEENIIEDYKNGYNVCGSCGCIVGSRIIDERGEWRTFSD--SGENPSRVGGPNNP 72
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSS--HPDRNLIQAFKSISAMSDRLGLV 123
L L T+I+ + L S SL K Q +SS P+R LI I+A +R L
Sbjct: 73 FLDTEQLDTLIS-----SGSGLASYSLAKTQMKSSLRGPERALINGLNLITAFCERKNLS 127
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI D A ++K VE++K L+G+N E I AAC+YIACRQ RT KE S+ KKE
Sbjct: 128 KTISDAAKYVFKTVENKKVLKGKNLEGIAAACIYIACRQAGFVRTFKEV-SILTAVPKKE 186
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSE 239
IGR + I H++ ++ + D + RFCS+L ++ K A Q+++
Sbjct: 187 IGRCYKAIFPHID-------KLAVVSTEDIVARFCSDLTLSIDIQKVALTISQRAQ 235
>gi|387594621|gb|EIJ89645.1| transcription initiation factor TFIIB [Nematocida parisii ERTm3]
Length = 312
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 88/236 (37%), Positives = 127/236 (53%), Gaps = 17/236 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DCK ++ D+ G +C CG ++ + +DE EWR F++ S +P RVGGP NP
Sbjct: 15 CPDCKEEENIIEDYKNGYNVCGSCGCIVGSRIIDERGEWRTFSD--SGENPSRVGGPNNP 72
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSS--HPDRNLIQAFKSISAMSDRLGLV 123
L L T+I+ + L S SL K Q +SS P+R LI I+A +R L
Sbjct: 73 FLDTEQLDTLIS-----SGSGLASYSLAKTQMKSSLRGPERALINGLNLITAFCERKNLS 127
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI D A ++K VE++K L+G+N E I AAC+YIACRQ RT KE S+ KKE
Sbjct: 128 KTISDAAKYVFKTVENKKVLKGKNLEGIAAACIYIACRQAGFVRTFKEV-SILTAVPKKE 186
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSE 239
IGR + I H++ ++ + D + RFCS+L ++ K A Q+++
Sbjct: 187 IGRCYKAIFPHID-------KLAVVSTEDIVARFCSDLTLSIDIQKVALTISQRAQ 235
>gi|345571434|gb|EGX54248.1| hypothetical protein AOL_s00004g281 [Arthrobotrys oligospora ATCC
24927]
Length = 452
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 92/254 (36%), Positives = 139/254 (54%), Gaps = 25/254 (9%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANE-SSDHDPVRVGGPL 63
C DCK +V + S+GD +C CGLVL ++D SEWR F+N+ + DP RVG
Sbjct: 37 CKDCKEFPPNLVEEFSSGDIVCGSCGLVLGDRTIDTRSEWRTFSNDDQGNDDPSRVGDSA 96
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPD--RNLIQAFKSISAMSDRLG 121
NPLL+G L T I+ + GGS + L + Q + +H ++L+ A+K I A D
Sbjct: 97 NPLLNGNQLDTGISF-SDGGSGR--ARDLHRAQNKVTHDKSTKSLLAAYKEIGAFCDSTN 153
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L + D A ++YK V+D K +G+ QE I+A C++IACR+ N PRT +E ++ K
Sbjct: 154 LQKNVADTAKQLYKSVDDAKAFKGKPQEVIIAGCIFIACRKCNVPRTFREIFAITK-VPK 212
Query: 182 KEIGRA----KEFIVKHLEAEMGQSVEMGTI-------------HASDYLRRFCSNLGMT 224
KEIGR ++F + EA + + V G I A D + RFC+NLG+T
Sbjct: 213 KEIGRVFKALEKFFSQQGEATVAEIVSGGGIANENAGYTSTTSTKAHDLMIRFCNNLGLT 272
Query: 225 NQAVKAAQEAVQKS 238
+ + +QE +++
Sbjct: 273 HNLIYISQELAERA 286
>gi|384496466|gb|EIE86957.1| hypothetical protein RO3G_11668 [Rhizopus delemar RA 99-880]
Length = 292
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 142/240 (59%), Gaps = 14/240 (5%)
Query: 5 YCADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
C DCK +V + ++GD +C +CGLVL +D SEWR FAN+ D DP RVG
Sbjct: 32 MCPDCKITPPHIVEEFASGDLVCGDCGLVLGDRIIDTRSEWRTFANDEGD-DPSRVGAAA 90
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSS--HPDRNLIQAFKSISAMSDRLG 121
NPLL G L TVI++ G + L K+ R++ +RNL+QA+K I AM D +
Sbjct: 91 NPLLDGNQLDTVISRRDGGTGA---AKDLNKVHGRATAVKGERNLVQAYKEIGAMCDSIS 147
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L + D A ++YK+VED+K LRG++ +AI+AAC++IACRQE RT +E C++ K
Sbjct: 148 LSKIVSDTAKQLYKRVEDEKLLRGKSSDAIIAACIFIACRQEKVGRTFREICALTR-VPK 206
Query: 182 KEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDL 241
KEIGR + + + L+ +++ D + RFCSNL + N KA + V++ +DL
Sbjct: 207 KEIGRCCKTLQQKLQ------TNTTIMNSEDLMLRFCSNLQLANYVQKAGIDLVRRVKDL 260
>gi|378756507|gb|EHY66531.1| transcription initiation factor IIB [Nematocida sp. 1 ERTm2]
Length = 308
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 89/236 (37%), Positives = 127/236 (53%), Gaps = 17/236 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DCK ++ D+ G +C CG V+ + +DE EWR F++ S +P RVGGP NP
Sbjct: 11 CPDCKEEENIIEDYKNGYNVCGSCGCVVGSRIIDERGEWRTFSD--SGENPSRVGGPNNP 68
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSS--HPDRNLIQAFKSISAMSDRLGLV 123
L L T+I+ + L S SL K Q +SS P+R LI I+A +R L
Sbjct: 69 FLDTEQLDTLIS-----SGSGLASYSLAKTQMKSSLRGPERALINGLNLITAFCERKNLS 123
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI D A ++K VE++K L+G+N E I AAC+YIACRQ RT KE S+ KKE
Sbjct: 124 KTISDAAKYVFKTVENKKVLKGKNLEGIGAACIYIACRQAGFVRTFKEV-SILTAVPKKE 182
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSE 239
IGR + I H++ ++ + D + RFCS+L ++ K A Q+++
Sbjct: 183 IGRCYKAIFPHID-------KLAVVSTEDIVARFCSDLTLSIDIQKVALTISQRAQ 231
>gi|429961945|gb|ELA41489.1| hypothetical protein VICG_01473 [Vittaforma corneae ATCC 50505]
Length = 312
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/238 (38%), Positives = 125/238 (52%), Gaps = 16/238 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DC ++ DH +G +C CG+VL +DETSEWR F +S DP RVG NP
Sbjct: 14 CTDCGETQNIIEDHRSGYNVCGNCGVVLGNRIIDETSEWRNF-EDSHKSDPSRVGSASNP 72
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLV 123
L L T+I +AG + S +L K+Q ++ P R L I A +R +
Sbjct: 73 FLDSEQLDTMI---SAGKG--MNSHTLSKIQMKNYMRGPKRALKNGLNLIQAFCERSNIC 127
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI DRA I+K VE QK L+G+N E V ACLYIAC+ EN PRT KE SV G K+E
Sbjct: 128 KTICDRAQHIFKMVESQKLLKGKNLEGSVGACLYIACKLENAPRTFKEI-SVITGVQKRE 186
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDL 241
IGR + I K ++ D + RFC++L ++ + + A QK+ ++
Sbjct: 187 IGRCYKLIAKDVDTN-------NYAPTGDIVSRFCADLNLSLKIQRVASTISQKTYEI 237
>gi|384485742|gb|EIE77922.1| hypothetical protein RO3G_02626 [Rhizopus delemar RA 99-880]
Length = 340
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 145/239 (60%), Gaps = 14/239 (5%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C DCK + +V + ++GD +C +CGLVL +D SEWR FAN+ D DP RVG N
Sbjct: 33 CPDCKIVPPHIVEEFASGDLVCGDCGLVLGDRIIDTRSEWRTFANDEGD-DPSRVGAAAN 91
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSS--HPDRNLIQAFKSISAMSDRLGL 122
PLL G L TVI++ G + L K+ R++ +RNL+QA+K I AM D + L
Sbjct: 92 PLLDGNQLDTVISRRDGGTGA---AKDLNKVHGRATAIKGERNLVQAYKEIGAMCDSISL 148
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+ D A ++YK+VED+K LRG++ +AI+AAC++IACRQE RT +E C++ KK
Sbjct: 149 SKIVSDTAKQLYKRVEDEKLLRGKSSDAIIAACIFIACRQEKVGRTFREICALTR-VPKK 207
Query: 183 EIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDL 241
EIGR K L+ ++ + + +++ D + RFCSNL + N KA + V++ ++L
Sbjct: 208 EIGRC----CKSLQLKLQTNTTI--MNSEDLMLRFCSNLQLANYVQKAGIDLVKRVKEL 260
>gi|409049636|gb|EKM59113.1| hypothetical protein PHACADRAFT_249341 [Phanerochaete carnosa
HHB-10118-sp]
Length = 350
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 90/250 (36%), Positives = 142/250 (56%), Gaps = 15/250 (6%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C DC+ + +V + S+GD +C CGLVL VD SEWR FAN+ D DP RVG ++
Sbjct: 31 CPDCRDPSPNIVEEFSSGDLVCGTCGLVLGDRVVDTRSEWRTFANDEGD-DPSRVGAAID 89
Query: 65 PLLSG-GGLSTVIAKPTAGGSTELLSGSLGKLQAR--SSHPDRNLIQAFKSISAMSDRLG 121
PL+ G L T I+ G L+ L + +R +S +RNL+QAF+ IS+ D+
Sbjct: 90 PLMEGVEQLDTTISFKDGGSG---LARELQRAASRGSASRSERNLLQAFRDISSWCDQFS 146
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L TI D A ++YK+ +++K LRG+ EA++AAC++IACR+ + PRT +E C++ + +K
Sbjct: 147 LPKTISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRKAHVPRTFREICNLTH-VSK 205
Query: 182 KEIGRAKEFIVKHLEAEMGQSVEMGTIHAS------DYLRRFCSNLGMTNQAVKAAQEAV 235
K +G+ + + + G S + T A+ D L R+C++L + + +
Sbjct: 206 KVLGQCYKQLEQAFNLTPGASADRQTSSATSSTGPEDLLVRYCNHLDLPPNVQPICSDII 265
Query: 236 QKSEDLDIRL 245
K+ DL I L
Sbjct: 266 VKARDLGIAL 275
>gi|50547791|ref|XP_501365.1| YALI0C02563p [Yarrowia lipolytica]
gi|49647232|emb|CAG81664.1| YALI0C02563p [Yarrowia lipolytica CLIB122]
Length = 324
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 86/240 (35%), Positives = 132/240 (55%), Gaps = 8/240 (3%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS-DHDPVRVGGPL 63
C +CK L ++V + GD +C +CGLVL VD SEWR F+N+ DP RVG +
Sbjct: 13 CPECKILPPDIVERFAEGDMVCGQCGLVLSDRVVDTRSEWRTFSNDDQGSDDPSRVGDAM 72
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL G L+T+I+ G S + L + Q+RS D L + IS + D +
Sbjct: 73 NPLLEGSQLNTIISFGAPGSS---VGRDLNRTQSRSLQDKKDAALSAVYAKISQICDGIS 129
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L + D A E+YK V D K LRG+ +AI+A ++IACR N RT +E ++ N +K
Sbjct: 130 LPRVVSDAAKEVYKLVHDDKRLRGKTPDAIIATVIFIACRHANVQRTFQEIGALTN-VSK 188
Query: 182 KEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDL 241
KEI R E + + LE Q+ + + R+CS+LG+ +Q A++ V++++++
Sbjct: 189 KEIRRTLELMKRLLEGTNIQAFRSTQTNPGALMPRYCSHLGLNSQVANLAEDIVKRAKEI 248
>gi|440638525|gb|ELR08444.1| transcription initiation factor TFIIB [Geomyces destructans
20631-21]
Length = 349
Score = 147 bits (370), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 91/250 (36%), Positives = 134/250 (53%), Gaps = 23/250 (9%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES-SDHDPVRVGGPL 63
C +CK +V + S+GD +C CGLVL VD SEWR FAN+ + DP RVG
Sbjct: 25 CKECKEFPPNLVEEFSSGDMVCGSCGLVLGDRIVDTRSEWRTFANDDQGNDDPSRVGDGA 84
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPD--RNLIQAFKSISAMSDRLG 121
NPLL+G LST IA G + L + Q +S+H +NL+ A+K I A D +G
Sbjct: 85 NPLLNGSQLSTTIAFGDGSGRSR----DLQRAQNKSAHDKGTKNLLAAYKEIGAHCDAIG 140
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
+ T D A ++K V+D K +G++QEA++A C++IACRQ PRT +E ++ +K
Sbjct: 141 IPKTGADVAKHLFKMVDDAKAFKGKSQEALIAGCIFIACRQSGVPRTFREIYALTK-VSK 199
Query: 182 KEIGRAKEFIVKHLEAEMGQSV-------------EMGTIHASDYLRRFCSNLGMTNQA- 227
K+IGR + + K ++ ++ + +A D + RFCS LG+ Q
Sbjct: 200 KDIGRTFKALEKFFASDENKAALTNGSLAQTDAYQATTSTNAVDLVVRFCSQLGLHGQQF 259
Query: 228 VKAAQEAVQK 237
VK +Q K
Sbjct: 260 VKVSQGLADK 269
>gi|302830488|ref|XP_002946810.1| hypothetical protein VOLCADRAFT_79408 [Volvox carteri f.
nagariensis]
gi|300267854|gb|EFJ52036.1| hypothetical protein VOLCADRAFT_79408 [Volvox carteri f.
nagariensis]
Length = 303
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 145/256 (56%), Gaps = 37/256 (14%)
Query: 29 CGLVLEAYSVDETSEWRIFANESSDH-DPVRVGGPLNPLLSGGGLSTVIAKPTAGGSTEL 87
CG V E+ +DE SEWR F+++ D DP RVGGP N LL G L+T I + G
Sbjct: 5 CGTVKESRLIDERSEWRTFSDKDKDTTDPNRVGGPTNHLLEG--LTTTIGRERNDGG--- 59
Query: 88 LSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRN 147
LS +L ++ AR+++PDR ++ A K + M + L + T+KDRA EIYK+V + K L+GR+
Sbjct: 60 LSYTLNRIHARTNNPDRVIMAAMKEVGRMCELLKVNGTVKDRALEIYKEVVEAKTLKGRS 119
Query: 148 QEAIVAACLYIACRQENKPRTVKEFCSV-ANGTTKKEIGR--------AKEFIVKH---- 194
+A+ A+CL+ ACRQE + RT K+ +V N +KKEIGR K+ + K
Sbjct: 120 VKALAASCLFWACRQEKQARTFKQIVAVLGNDVSKKEIGRCFKDLQQLKKDELHKQGASA 179
Query: 195 --LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDIRL------- 245
L + M Q+V+ H ++++R +C++L + + K A+E Q ++ D R+
Sbjct: 180 DALASTMNQTVQ----HPAEFVRNYCNHLRLEFKCKKLAEEIAQNAKPQDRRVPWDGRTP 235
Query: 246 -----ILVFFSLFLVE 256
+VF ++ L E
Sbjct: 236 TSIASAIVFIAMMLWE 251
>gi|395329967|gb|EJF62352.1| cyclin-like protein [Dichomitus squalens LYAD-421 SS1]
Length = 351
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/246 (36%), Positives = 136/246 (55%), Gaps = 11/246 (4%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C +C+ +V + S+GD +C CGLVL VD SEWR FAN+ D DP RVG +
Sbjct: 31 CPECRDPNPNIVEEFSSGDLVCGTCGLVLGDRIVDTRSEWRTFANDEGD-DPSRVGAASD 89
Query: 65 PLLSG-GGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
PL+ G L T I+ GGS +A SS +RNL+QAF+ IS D+ L
Sbjct: 90 PLMEGIEQLDTTISF-KDGGSGLARELQRAASRANSSRSERNLLQAFRDISNWCDQFSLP 148
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI D A ++YK+ +++K LRG+ EA++AAC++IACRQ + PRT +E C++ + +KK
Sbjct: 149 KTISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFREICNLTH-VSKKV 207
Query: 184 IGRAKEFIVKHLEAEMGQSVEM------GTIHASDYLRRFCSNLGMTNQAVKAAQEAVQK 237
+G+ + + + G S + GT A D L R+C++L + + + K
Sbjct: 208 LGQCYKALEQAFNLTPGASQDRHAITPSGTTGAEDLLVRYCNHLALPPNFQPICADIIVK 267
Query: 238 SEDLDI 243
+ +L I
Sbjct: 268 ARELGI 273
>gi|255540857|ref|XP_002511493.1| transcription initiation factor iib, putative [Ricinus communis]
gi|223550608|gb|EEF52095.1| transcription initiation factor iib, putative [Ricinus communis]
Length = 89
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/90 (78%), Positives = 77/90 (85%), Gaps = 2/90 (2%)
Query: 137 VEDQK-PLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHL 195
+EDQK PL GRNQ+AI AACLYIACRQENKPRT KE CSV NG TKKEIGRA+ FI+KHL
Sbjct: 1 MEDQKKPLEGRNQDAITAACLYIACRQENKPRTPKEICSVVNGATKKEIGRAEVFILKHL 60
Query: 196 EAEMGQSVEMGTIHASDYLRRFCSNLGMTN 225
E EMG VE GTIHA+DYLRR CSNLG+TN
Sbjct: 61 EVEMGH-VEAGTIHAADYLRRVCSNLGLTN 89
>gi|389746675|gb|EIM87854.1| cyclin-like protein [Stereum hirsutum FP-91666 SS1]
Length = 353
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 131/227 (57%), Gaps = 12/227 (5%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C DC+ ++ + +GD +C CGLVL VD SEWR FAN+ D DP RVGGP +
Sbjct: 30 CPDCRDPNPNIIEEFGSGDLVCGTCGLVLGDRVVDTRSEWRTFANDEGD-DPSRVGGPSD 88
Query: 65 PLLSG-GGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
PLL G G L T+I+ GGS +A+++ +RNL+ AF+ IS+ D+ L
Sbjct: 89 PLLEGIGQLDTIISF-RDGGSGMARELQRAASRAQNTRSERNLLSAFRDISSWCDQFSLP 147
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI D A ++YK+ +++K LRG+ EA++AAC++IACRQ + PRT +E C++ + +KK
Sbjct: 148 KTISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFREICNLTH-VSKKV 206
Query: 184 IGRAKEFIVKHLEAEMG-------QSVEMGTIHASDYLRRFCSNLGM 223
+G+ + + + G ++ + D L R+C++L +
Sbjct: 207 LGQCYKALEQAFNLSPGAQNHNSTNGTQVISTGPEDLLIRYCNHLDL 253
>gi|118780388|ref|XP_310127.3| AGAP009559-PA [Anopheles gambiae str. PEST]
gi|116131050|gb|EAA05855.3| AGAP009559-PA [Anopheles gambiae str. PEST]
Length = 315
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 128/229 (55%), Gaps = 15/229 (6%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ GD ICS+CGL++ +D +SEWR F+++ S DP RVG +P+L LST
Sbjct: 26 LVDDYHTGDMICSDCGLIVGDRMIDPSSEWRTFSDDPSRPDPSRVGS-TDPVLQN--LST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
I +P+A G S K+ + R L+ F I+ M++R+ +I A I+
Sbjct: 83 FI-QPSANGFEPPNHFSFLKMDTTT----RKLMFGFAMIATMAERINAPASIVSHAKTIF 137
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+ + L R+ EA+ ACLYIACRQE PRT KE C+V + +KKEIGR + I K
Sbjct: 138 KQALEPAALTHRSLEAVSVACLYIACRQEGVPRTFKEMCAVCSA-SKKEIGRCFKLITKV 196
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
L + I + D+++RFCS L + ++ KAA QK+ + D+
Sbjct: 197 LATSLDH------ITSEDFMQRFCSKLFLPHEVQKAATHIAQKAFEADL 239
>gi|398404368|ref|XP_003853650.1| hypothetical protein MYCGRDRAFT_103549 [Zymoseptoria tritici
IPO323]
gi|339473533|gb|EGP88626.1| hypothetical protein MYCGRDRAFT_103549 [Zymoseptoria tritici
IPO323]
Length = 361
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/248 (35%), Positives = 134/248 (54%), Gaps = 27/248 (10%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES-SDHDPVRVGGPL 63
C DC+ E+ DH++GD IC CGLVL+ S+D +SEWR F+N+ + DP RVG
Sbjct: 33 CRDCREDPPELREDHASGDLICENCGLVLQQRSIDTSSEWRTFSNDDQGNDDPSRVGDGP 92
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRN--LIQAFKSISAMSDRLG 121
N LL+G L+T IA G + S L + Q +++H N L+QA+K I A+ D
Sbjct: 93 NALLNGAQLNTNIAFGDGG----MRSKELHRAQNKANHDKSNKLLLQAYKQIGALCDGWA 148
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L T+ + A IYK ++ + +G++QEA++A C++IACR+ N PRT +E + + +K
Sbjct: 149 LPYTVSESAKHIYKDADESRLFKGKSQEALIAGCVFIACRRNNVPRTFREAMELTS-VSK 207
Query: 182 KEIGRAKEFIVKHL-EAEMGQSV-----------------EMGTIHASDYLRRFCSNLGM 223
KEIGR + + L + G++ T +D +RFCS LG+
Sbjct: 208 KEIGRTFKLLENFLMNKDKGKNAGSDAAANGAVVYNEAYKGSATADPADLCQRFCSMLGL 267
Query: 224 TNQAVKAA 231
+A A
Sbjct: 268 DQRATNVA 275
>gi|269862954|ref|XP_002651040.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
gi|220065224|gb|EED43015.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
Length = 277
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 126/238 (52%), Gaps = 16/238 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + V+ D+ G +C +CG V VDE EWR F+ +S+ DP RVG +NP
Sbjct: 14 CNECGEVNSVIEDYRNGFNVCGKCGCVFREKIVDEGGEWRNFS-DSTKGDPSRVGSAINP 72
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLV 123
L L TVI+ + S +L ++Q ++ PDR L FK I + +R L
Sbjct: 73 FLDVEQLDTVISAGSGANSY-----NLNRIQMKNYMRGPDRVLKNGFKLIQSFCERGFLT 127
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI D+A I+K VE +K L+G+N E + AC+YIAC+ E PRT KE SV K+E
Sbjct: 128 QTIIDKAQAIFKDVESKKLLKGKNLEGCIGACIYIACKTEGCPRTFKEI-SVITVVPKRE 186
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDL 241
IG+ + I K ++ G + +D + RFCS+L + + A+ +K +D+
Sbjct: 187 IGKCYKLISKEIDT-------TGIMATADIVGRFCSDLNLNAKIQNTARYIAKKVQDI 237
>gi|269862513|ref|XP_002650868.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
gi|220065496|gb|EED43190.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
Length = 311
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 126/238 (52%), Gaps = 16/238 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + V+ D+ G +C +CG V VDE EWR F+ +S+ DP RVG +NP
Sbjct: 14 CNECGEVNSVIEDYRNGFNVCGKCGCVFREKIVDEGGEWRNFS-DSTKGDPSRVGSAINP 72
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLV 123
L L TVI+ + S +L ++Q ++ PDR L FK I + +R L
Sbjct: 73 FLDVEQLDTVISAGSGANSY-----NLNRIQMKNYMRGPDRVLKNGFKLIQSFCERGFLT 127
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI D+A I+K VE +K L+G+N E + AC+YIAC+ E PRT KE SV K+E
Sbjct: 128 QTIIDKAQAIFKDVESKKLLKGKNLEGCIGACIYIACKTEGCPRTFKEI-SVITVVPKRE 186
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDL 241
IG+ + I K ++ G + +D + RFCS+L + + A+ +K +D+
Sbjct: 187 IGKCYKLISKEIDT-------TGIMATADIVGRFCSDLNLNAKIQNTARYIAKKVQDI 237
>gi|385301292|gb|EIF45494.1| transcription initiation factor iib [Dekkera bruxellensis AWRI1499]
Length = 358
Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 95/279 (34%), Positives = 147/279 (52%), Gaps = 27/279 (9%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK E++ HS GD +C+ CGLVL + +D SEWR F N+ + DP RVG
Sbjct: 30 CPECKVYPPELIERHSDGDIVCALCGLVLSDHLIDSRSEWRTFNNDDQNGDDPSRVGEAS 89
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
+L LSTVI+ GG ++ L + Q +S D L A+ IS M D
Sbjct: 90 ASVLDSDQLSTVISNSQEGGR---VARELNRTQGKSVADKKDHALQTAYAKISQMCDGYQ 146
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L ++D A E+YK V D K LRG++QE+I+AA +++ CR+ + PR+ KE ++ N +
Sbjct: 147 LPKVVQDGAKEVYKLVYDDKMLRGKSQESIMAAAIFLGCRKASVPRSFKEIWALTN-VPR 205
Query: 182 KEIGRAKEF---IVKHLEAEMG-----QSVEMGTIHAS--DYLRRFCSNLGMTNQAVKAA 231
KEIG+ + I++ AE G Q+ + T + D + RFCS+LG+T Q +A
Sbjct: 206 KEIGKTFKVINQIIRKKNAEHGGLITYQNDNIATTQTNPEDLVGRFCSHLGLTPQITSSA 265
Query: 232 QEAVQKSEDL---------DIRLILVFFSLFLVETHIQL 261
+ +K ++ I +++F+ L + HI L
Sbjct: 266 RHIARKLREVGVLEGRSPTTIAATVIYFATLLFKQHISL 304
>gi|321470096|gb|EFX81073.1| hypothetical protein DAPPUDRAFT_299541 [Daphnia pulex]
Length = 321
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/231 (37%), Positives = 128/231 (55%), Gaps = 8/231 (3%)
Query: 17 FDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVI 76
+D+ + D IC ECGLV+E D SEWR F+ E+ + DP ++G N LL G L+T+
Sbjct: 25 YDYRSSDQICPECGLVVEDRVDDVGSEWRTFSYEAGNVDPSQIGEEENTLLDGSNLTTMF 84
Query: 77 AKPTAGGSTEL--LSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
+GG + L G++G+ + R S D+ L+ A+ IS M+ + L T+ DRAN
Sbjct: 85 GPSMSGGGSLLNESGGAVGRKKNRQTMSSSDQTLVSAYNEISNMAVNINLPRTVVDRANC 144
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K V D K L+G + +AI + CLYIACRQE PRT KE C++ KKE+GR + I
Sbjct: 145 LFKNVHDGKHLKGHSTKAIASTCLYIACRQEGVPRTFKEICALTK-IDKKELGRCYKLIP 203
Query: 193 KHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
K LE + + I SD++ NL + + A K+ +LD+
Sbjct: 204 KALETSVDV---IPRITTSDFIPLQNLNLELNAMVQREALHIGLKAVELDV 251
>gi|269862581|ref|XP_002650895.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
gi|220065455|gb|EED43163.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
Length = 252
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 126/238 (52%), Gaps = 16/238 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + V+ D+ G +C +CG V VDE EWR F+ +S+ DP RVG +NP
Sbjct: 14 CNECGEVNSVIEDYRNGFNVCGKCGCVFREKIVDEGGEWRNFS-DSTKGDPSRVGSAINP 72
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLV 123
L L TVI+ + S +L ++Q ++ PDR L FK I + +R L
Sbjct: 73 FLDVEQLDTVISAGSGANSY-----NLNRIQMKNYMRGPDRVLKNGFKLIQSFCERGFLT 127
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI D+A I+K VE +K L+G+N E + AC+YIAC+ E PRT KE SV K+E
Sbjct: 128 QTIIDKAQAIFKDVESKKLLKGKNLEGCIGACIYIACKTEGCPRTFKEI-SVITVVPKRE 186
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDL 241
IG+ + I K ++ G + +D + RFCS+L + + A+ +K +D+
Sbjct: 187 IGKCYKLISKEIDT-------TGIMATADIVGRFCSDLNLNAKIQNTARYIAKKVQDI 237
>gi|238879169|gb|EEQ42807.1| transcription initiation factor IIB [Candida albicans WO-1]
Length = 344
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/252 (36%), Positives = 137/252 (54%), Gaps = 18/252 (7%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK ++V S GD +C CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 23 CPECKIFPPDLVERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 82
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL LST+I+ A ST+ L + Q++S D L A+ IS M D
Sbjct: 83 NPLLDTEDLSTMIS--YAPDSTKA-GRELSRAQSKSLVDKKDNALAAAYIKISQMCDGYQ 139
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L + D A E+YK V D+KPLRG++QE+I+AA ++I CR+ N R+ KE ++ N +
Sbjct: 140 LPKIVSDGAKEVYKMVYDEKPLRGKSQESIMAASIFIGCRKANVARSFKEIWALTN-VPR 198
Query: 182 KEIGRAKEFIVKHLE---------AEMGQ-SVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
KEIG+ + + K + A GQ S++ A D +RRFCS+LG+ Q A
Sbjct: 199 KEIGKVFKIMDKIIREKNAANPNAAYYGQDSIQTTQTSAEDLIRRFCSHLGVNTQVTNGA 258
Query: 232 QEAVQKSEDLDI 243
+ ++ +++ +
Sbjct: 259 EYIARRCKEVGV 270
>gi|68468997|ref|XP_721557.1| likely transcription factor TFIIB [Candida albicans SC5314]
gi|68469546|ref|XP_721286.1| likely transcription factor TFIIB [Candida albicans SC5314]
gi|46443195|gb|EAL02479.1| likely transcription factor TFIIB [Candida albicans SC5314]
gi|46443477|gb|EAL02759.1| likely transcription factor TFIIB [Candida albicans SC5314]
Length = 344
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/252 (36%), Positives = 137/252 (54%), Gaps = 18/252 (7%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK ++V S GD +C CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 23 CPECKIFPPDLVERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 82
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL LST+I+ A ST+ L + Q++S D L A+ IS M D
Sbjct: 83 NPLLDTEDLSTMIS--YAPDSTKA-GRELSRAQSKSLVDKKDNALAAAYIKISQMCDGYQ 139
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L + D A E+YK V D+KPLRG++QE+I+AA ++I CR+ N R+ KE ++ N +
Sbjct: 140 LPKIVSDGAKEVYKMVYDEKPLRGKSQESIMAASIFIGCRKANVARSFKEIWALTN-VPR 198
Query: 182 KEIGRAKEFIVKHLE---------AEMGQ-SVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
KEIG+ + + K + A GQ S++ A D +RRFCS+LG+ Q A
Sbjct: 199 KEIGKVFKIMDKIIREKNAANPNAAYYGQDSIQTTQTSAEDLIRRFCSHLGVNTQVTNGA 258
Query: 232 QEAVQKSEDLDI 243
+ ++ +++ +
Sbjct: 259 EYIARRCKEVGV 270
>gi|241948569|ref|XP_002417007.1| general transcription factor TFIIB, putative; transcription factor
E, putative; transcription initiation factor IIB,
putative [Candida dubliniensis CD36]
gi|223640345|emb|CAX44595.1| general transcription factor TFIIB, putative [Candida dubliniensis
CD36]
Length = 344
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/252 (36%), Positives = 137/252 (54%), Gaps = 18/252 (7%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK ++V S GD +C CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 23 CPECKIFPPDLVERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 82
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL LST+I+ A ST+ L + Q++S D L A+ IS M D
Sbjct: 83 NPLLDTEDLSTMIS--YAPDSTKA-GRELNRAQSKSLVDKKDNALAAAYIKISQMCDGYQ 139
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L + D A E+YK V D+KPLRG++QE+I+AA ++I CR+ N R+ KE ++ N +
Sbjct: 140 LPKIVSDGAKEVYKMVYDEKPLRGKSQESIMAASIFIGCRKANVARSFKEIWALTN-VPR 198
Query: 182 KEIGRAKEFIVKHLE---------AEMGQ-SVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
KEIG+ + + K + A GQ S++ A D +RRFCS+LG+ Q A
Sbjct: 199 KEIGKVFKIMDKIIREKNAANPNAAYYGQDSIQTTQTSAEDLIRRFCSHLGVNTQVTNGA 258
Query: 232 QEAVQKSEDLDI 243
+ ++ +++ +
Sbjct: 259 EYIARRCKEVGV 270
>gi|320582171|gb|EFW96389.1| general transcription factor TFIIB [Ogataea parapolymorpha DL-1]
Length = 338
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/279 (34%), Positives = 143/279 (51%), Gaps = 27/279 (9%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK E+V HS GD +C+ CGLVL + +D SEWR FAN+ + DP RVG
Sbjct: 19 CPECKVYPPEIVERHSEGDIVCALCGLVLSSRIIDTRSEWRTFANDDQNGDDPSRVGEAT 78
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
N L LSTVI +AG + L ++Q RS D L A+ IS + D
Sbjct: 79 NGALDSDQLSTVI---SAGVDGNRAAKELNRIQNRSVVDRKDYALQSAYSKISQLCDGYQ 135
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L ++D A E+YK V D K LRG++QEAI+AA ++ CR+ + PRT E ++ N K
Sbjct: 136 LPRVVQDGAKEVYKLVHDDKMLRGKSQEAIMAASIFFGCRKADVPRTYNEIWALTN-VPK 194
Query: 182 KEIGRAKEF---IVKHLEAEM-------GQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
K+IG+ + I++ +AE ++ + D + RFCS+LG++ Q +A
Sbjct: 195 KDIGKVFKIIKQIIQRKDAEQDGLITRRNNNISTTQTNPEDLVGRFCSHLGLSPQITTSA 254
Query: 232 QEAVQKSEDL---------DIRLILVFFSLFLVETHIQL 261
Q + ++L I +++FS + + I L
Sbjct: 255 QHIARTLKELGVLEGRSPTTIAATVIYFSTAIFKQQIPL 293
>gi|300708774|ref|XP_002996560.1| hypothetical protein NCER_100338 [Nosema ceranae BRL01]
gi|239605871|gb|EEQ82889.1| hypothetical protein NCER_100338 [Nosema ceranae BRL01]
Length = 333
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 124/220 (56%), Gaps = 16/220 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DC ++ D+ G +C CG V+ +DE+SEWR F+ +S+ DP R G NP
Sbjct: 35 CTDCGETQNIIEDYRNGYNVCGRCGCVVGNRIIDESSEWRSFS-DSNKADPCRTGSVSNP 93
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSH--PDRNLIQAFKSISAMSDRLGLV 123
L L T+I+ + G++ S +L K+Q +++ P+R+L I+A +R +
Sbjct: 94 FLDTEQLDTMIS--SVPGTS---SYNLQKIQLKTAMRGPERSLKHGINLITAFCERANIT 148
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
T+ DRA I+K V+D+K L+G+N E +V AC+YIACR EN PRT KE S+ KKE
Sbjct: 149 KTVIDRACLIFKIVDDKKLLKGKNIEGVVGACIYIACRLENCPRTFKEV-SLITSVQKKE 207
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGM 223
IG++ + I H+E + + D + RFCS+L +
Sbjct: 208 IGKSFKLISPHVE-------NLTVVSTKDIVARFCSDLRL 240
>gi|296420282|ref|XP_002839704.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295635898|emb|CAZ83895.1| unnamed protein product [Tuber melanosporum]
Length = 346
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 130/252 (51%), Gaps = 23/252 (9%)
Query: 6 CADCKRL-TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES-SDHDPVRVGGPL 63
C DC+ + +V + S+GD +C CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 20 CPDCREVPANIVEEFSSGDMVCGSCGLVLGDRIVDTRSEWRTFSNDDQAGDDPSRVGDAA 79
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
NP L+G L T I+ T GG+ L + K S + L+ A+K I A D + +
Sbjct: 80 NPFLNGAQLETTISY-TPGGAGRELHRAQNKTAGDKST--KGLLAAYKEIGAFCDSINIQ 136
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+ D A +++K V+D K +G+ QEAI+A C++IACRQ PRT +E ++ KKE
Sbjct: 137 KVVSDAAKQLFKIVDDHKAFKGKPQEAIIAGCIFIACRQCQVPRTFREIFALTK-VPKKE 195
Query: 184 IGRA----KEFIVKHLEAEMGQSVEMGTI-------------HASDYLRRFCSNLGMTNQ 226
IGR ++F +M + + G I A++ + R+C+NL +T
Sbjct: 196 IGRVFKALEKFFAAQDSKKMDEITKSGGIVDDSQQYKTTSSTKATELMIRYCNNLNLTQN 255
Query: 227 AVKAAQEAVQKS 238
AQE ++
Sbjct: 256 CTTIAQELADRA 267
>gi|406607062|emb|CCH41577.1| Transcription initiation factor IIB [Wickerhamomyces ciferrii]
Length = 339
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 92/250 (36%), Positives = 132/250 (52%), Gaps = 16/250 (6%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK E+ + GD +C+ CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 19 CPECKVFPPELAERFAEGDVVCALCGLVLSNKIVDTRSEWRTFSNDDQNGDDPSRVGEAG 78
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL G LST+I G L K Q++S D L A+ IS M D
Sbjct: 79 NPLLDGNQLSTMIG---YGQGDSRAGRDLNKAQSKSIVDKKDNALQSAYAKISMMCDAAQ 135
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L ++D A + YK D+K L+G++QE+I+AA + + CR+ RT KE C++ K
Sbjct: 136 LPRIVQDGAKQAYKLSHDEKALKGKSQESIMAAVIVVGCRKAQVDRTFKEICTLTR-VPK 194
Query: 182 KEIGRAKEFIVKHLEAE-------MGQ-SVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
KEIGR I K LE + M Q +++ A D +RRFCS+LG++ Q AA+
Sbjct: 195 KEIGRVFVIIKKILEQKNQTTTTYMAQENIQSSQTSAEDLIRRFCSHLGLSIQLSNAAEH 254
Query: 234 AVQKSEDLDI 243
++ +D+ +
Sbjct: 255 IAKRCKDVGV 264
>gi|393216052|gb|EJD01543.1| cyclin-like protein [Fomitiporia mediterranea MF3/22]
Length = 354
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 139/247 (56%), Gaps = 25/247 (10%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C +C+ ++ + +GD +C CGL+L VD SEWR FAN+ D DP RVG ++
Sbjct: 32 CPECRDPNPNIIEEFGSGDLVCGTCGLILGDRVVDTRSEWRTFANDEGD-DPSRVGAAID 90
Query: 65 PLLSG-GGLSTVIAKPTAGGSTELLSGSLGKLQ-----ARSSHPDRNLIQAFKSISAMSD 118
PL+ G + TVI+ G SG +LQ ++++ +RN++QAF+ IS+ D
Sbjct: 91 PLMEGMEQMDTVISYKDGG------SGVARELQRAASRSQNTRSERNMLQAFRDISSWCD 144
Query: 119 RLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG 178
+ L TI D A ++YK+ +++K LRG++ +A++AAC++IACRQ + PRT +E C++ +
Sbjct: 145 QFSLPKTISDIAKQLYKRADEEKLLRGKSLDAVIAACIFIACRQAHVPRTFREMCTLTH- 203
Query: 179 TTKKEIGRAKEFIVK--HLEAEMGQSVEMG--------TIHASDYLRRFCSNLGMTNQAV 228
KK +G+ + + K +L A + T + D L R+C++LG+ +
Sbjct: 204 VPKKTLGQCYKTLEKAFNLAAAGSNNTTQNSRPDPAATTTNPQDLLARYCNHLGLPHLVQ 263
Query: 229 KAAQEAV 235
A E +
Sbjct: 264 STASEII 270
>gi|402469405|gb|EJW04304.1| hypothetical protein EDEG_01428 [Edhazardia aedis USNM 41457]
Length = 305
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 121/232 (52%), Gaps = 16/232 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D+ G +C+ECG + +DE SEWR F + + DP RVGGP NP
Sbjct: 11 CPNCGEDKNIIEDYKNGYNVCAECGCTIGPRIIDEGSEWRNFGDSQTGGDPSRVGGPNNP 70
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTT 125
L L T+I+ + T++ S G P+R LI F ++ DR G+
Sbjct: 71 FLETDVLDTIISGKDSLARTQMKSTMRG--------PERALINGFNLLTNYCDRNGIAMV 122
Query: 126 IKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIG 185
I+DRA I K V ++K +G+N EA+ AACL++AC+ PRT KE S+ K E+G
Sbjct: 123 IQDRAKTILKTVIEKKLAKGKNAEAVAAACLHLACKHAKCPRTFKEI-SLMCQVPKDEVG 181
Query: 186 RAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQK 237
+ + I KH + VE+ ++ D + RFCS+L + + K A Q+
Sbjct: 182 KCYKLIEKHFD-----KVEI--LNVEDIIERFCSDLSLGIKEQKTALRISQR 226
>gi|344231613|gb|EGV63495.1| hypothetical protein CANTEDRAFT_114798 [Candida tenuis ATCC 10573]
Length = 344
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 133/252 (52%), Gaps = 18/252 (7%)
Query: 6 CADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C DCK +++ S GD +C CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 24 CPDCKIYPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 83
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL LST+I+ + + L + Q++S D L AF IS M D
Sbjct: 84 NPLLDHENLSTMISH---SPDSLRIGRELSRAQSKSLVDKKDNALAAAFAKISQMCDGYQ 140
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L ++D A E+YK V +++PLRG++QE+I+AA ++I CR+ PRT KE ++ N +
Sbjct: 141 LPKIVQDAAKEVYKLVYEERPLRGKSQESIMAASIFIGCRKAKVPRTFKEIWALTN-VPR 199
Query: 182 KEIG----------RAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
EIG R K I + + +++ A D +RR+CS+LG+ Q AA
Sbjct: 200 TEIGKVFKIMDRIIREKNAINPAAFSLVEDNIQTTQTSAEDLIRRYCSHLGLGTQITNAA 259
Query: 232 QEAVQKSEDLDI 243
+ ++ ++L +
Sbjct: 260 EYIARRCKELGV 271
>gi|146422766|ref|XP_001487318.1| hypothetical protein PGUG_00695 [Meyerozyma guilliermondii ATCC
6260]
Length = 339
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 87/249 (34%), Positives = 139/249 (55%), Gaps = 14/249 (5%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK +++ S GD +C CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 25 CPECKTYPPDLIERFSEGDIVCGTCGLVLSDRVVDTRSEWRTFSNDDRNGEDPNRVGDAS 84
Query: 64 NPLLSGGGLSTVIAK-PTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGL 122
NPLL LST+I+ P G + LS + +L++ D +L+ A+ IS M + L
Sbjct: 85 NPLLDSEDLSTMISYVPNDGRAGRDLSRA--QLKSAIDRKDSSLVAAYSKISHMCEGYQL 142
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
++D + EIYK V D+K LRG++QE+I+AA + + CR+ N R+ E ++ N KK
Sbjct: 143 PRVVQDASKEIYKLVHDEKRLRGKSQESIMAASICLGCRKANVGRSFLEIAALTN-VPKK 201
Query: 183 EIGRAKEFIVKHLEAEMGQSVE--------MGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
E+GR + +++ L+ + + + + + A D +RRFCS+LG++ Q AA+
Sbjct: 202 ELGRVFKTMIQLLQEKHSNNPDVMHMTQQPVSSTSAEDLIRRFCSHLGLSTQISNAAEYI 261
Query: 235 VQKSEDLDI 243
++ +D I
Sbjct: 262 ARRCKDEQI 270
>gi|328771004|gb|EGF81045.1| hypothetical protein BATDEDRAFT_35027 [Batrachochytrium
dendrobatidis JAM81]
Length = 335
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 127/228 (55%), Gaps = 10/228 (4%)
Query: 6 CADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFAN-ESSDHDPVRVGGPL 63
C DCK + +V D SAGD IC CGL+L +D SEWR F+N + + DP RVG
Sbjct: 32 CRDCKDAVPNIVEDFSAGDLICGNCGLILGNRIIDTRSEWRTFSNSDDNSGDPSRVGAAS 91
Query: 64 NPLL-SGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGL 122
+P+L S G + + I GG+ L+ + L+QAFK I AM +R+ L
Sbjct: 92 DPILGSKGTIDSTIIGVRDGGTGRSRELHRAHLKVIGQKGEVALLQAFKVIQAMGERISL 151
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+ D A +++KK +D++ L+ + EAI+AACLYIACR+ + RT +E C+++ +KK
Sbjct: 152 SKIVIDSAKQLFKKADDERLLKSKPTEAIIAACLYIACREHSVTRTFREICALSK-VSKK 210
Query: 183 EIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKA 230
EIGR K L+ M V+ ++ A Y+ RF S++ + KA
Sbjct: 211 EIGRC----YKALQPNMEHPVQQISLDA--YISRFSSSIDIKADVRKA 252
>gi|344303899|gb|EGW34148.1| hypothetical protein SPAPADRAFT_59562 [Spathaspora passalidarum
NRRL Y-27907]
Length = 342
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 139/250 (55%), Gaps = 14/250 (5%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C DC++ ++V S GD IC CGLVL VD SEWR F N+ + DP RVG
Sbjct: 21 CPDCRQFPPDLVERFSEGDIICGNCGLVLSDRIVDTRSEWRTFNNDDQNGDDPSRVGDSG 80
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRN--LIQAFKSISAMSDRLG 121
NPLL LST+I+ GG+ + L ++Q +S +N L A+ I + +
Sbjct: 81 NPLLDTEDLSTMISYVPQGGNR--VGRDLTRIQQKSLVDKKNNALNAAYIRIQELCNGYQ 138
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L T+ D A +YK V + K LRG++Q++I+AA + + CR+ + PRT++E ++ N +K
Sbjct: 139 LPKTVTDAAKHLYKAVREDKLLRGKSQDSIMAAVILLGCRRSDVPRTLEEIRALTNVPSK 198
Query: 182 K--EIGR-AKEFIVKHLEAE-----MGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
+ ++ R K+ I HL A + ++ + T A D +RRFCS+LG+T Q AA+
Sbjct: 199 QIAKVARLIKKIIHSHLVANPQSSILEETTSLTTHSAEDLIRRFCSHLGLTPQVTNAAEH 258
Query: 234 AVQKSEDLDI 243
++ +D+ +
Sbjct: 259 IARQCKDIGV 268
>gi|448519650|ref|XP_003868125.1| hypothetical protein CORT_0B09860 [Candida orthopsilosis Co 90-125]
gi|380352464|emb|CCG22690.1| hypothetical protein CORT_0B09860 [Candida orthopsilosis]
Length = 353
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 132/253 (52%), Gaps = 19/253 (7%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK +++ S GD +C CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 31 CPECKIFPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 90
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL LST+I+ L + Q++S D L A+ IS M D
Sbjct: 91 NPLLDTEDLSTMISYVPDNSKA---GRELNRAQSKSLVDKKDNALAAAYAKISQMCDGYQ 147
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L ++D A E+YK V D+K LRG++QE+I+AA ++I CR+ RT KE ++ N K
Sbjct: 148 LPKIVQDGAKEVYKMVYDEKRLRGKSQESIMAASIFIGCRKAKVARTFKEIWALTN-VPK 206
Query: 182 KEIG---RAKEFIVKHLEAEMGQS--------VEMGTIHASDYLRRFCSNLGMTNQAVKA 230
KEIG R I++ QS ++ A D +RRFCS+LG+++Q
Sbjct: 207 KEIGKVFRIMNNIIREKNEANPQSAAYYSQDNIQTTQTSAEDLIRRFCSHLGLSSQVTNG 266
Query: 231 AQEAVQKSEDLDI 243
A+ ++S+D+ +
Sbjct: 267 AEYIARRSKDVGV 279
>gi|156062044|ref|XP_001596944.1| hypothetical protein SS1G_01136 [Sclerotinia sclerotiorum 1980]
gi|154696474|gb|EDN96212.1| hypothetical protein SS1G_01136 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 350
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 137/253 (54%), Gaps = 26/253 (10%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS-DHDPVRVGGPL 63
C DCK + +V + S+GD +C CG+V+ VD SEWR F+N+ + DP RVG
Sbjct: 23 CKDCKEIPPNLVEEFSSGDLVCDTCGVVIGDRIVDTRSEWRTFSNDDQGNDDPSRVGDAA 82
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR--SSHPDRNLIQAFKSISAMSDRLG 121
NPLL+G LST IA G + + S L + Q + + + L+ A+K I A D +
Sbjct: 83 NPLLNGSQLSTTIA----FGDSSVRSRELYRAQGKQGTDKSTKALLAAYKEIGAHCDAVN 138
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
+ + D A ++K V+D K +G++QEAI+A C++IACRQ + PRT +E ++ +K
Sbjct: 139 IPKNVSDTAKHLFKLVDDAKAFKGKSQEAIIAGCIFIACRQCDVPRTFREIYALTK-VSK 197
Query: 182 KEIGRA----KEFIVKHLEAEMGQSVEMG------------TIHASDYLRRFCSNLGMTN 225
K+IGR ++F A+ ++ +G + +A D R+CS LG+ +
Sbjct: 198 KDIGRTFKALEKFFASDSSAKKARAEAVGAPASTESYQTTTSTNAKDLCTRYCSQLGLKS 257
Query: 226 QA-VKAAQEAVQK 237
Q VK +Q +K
Sbjct: 258 QQFVKVSQGLAEK 270
>gi|407927206|gb|EKG20106.1| Transcription factor TFIIB [Macrophomina phaseolina MS6]
Length = 355
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 131/244 (53%), Gaps = 21/244 (8%)
Query: 6 CADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C DCK + ++ + S+GDT+C CGLVL A VD SEWR F+N+ + DP RVG
Sbjct: 31 CPDCKEQPPNLIEEFSSGDTVCGSCGLVLSARVVDTRSEWRTFSNDDQNGDDPSRVGDAA 90
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
NPLL+G L+T I+ S EL + + ++ + +++L+QA+K I DR L
Sbjct: 91 NPLLNGSQLATNISYTDGAKSREL---NRAQNKSGTDKSNKSLMQAYKLIGQWCDRWLLP 147
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
T+ D A +YK +D K +G+ E+IVA CL++ACRQ + R+ +E + G +KKE
Sbjct: 148 HTVSDTAKHMYKMTDDSKGFKGKALESIVAGCLFLACRQAQQGRSFRELHELT-GVSKKE 206
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGT---IHASDYLR------------RFCSNLGMTNQAV 228
IGR + + K A+ +G + A D + R+C+ LG+ N+
Sbjct: 207 IGRIFKSLDKFFNAQNRSGNILGNGGLVMAGDAYKSKEATSPPELCARYCNQLGLDNRVQ 266
Query: 229 KAAQ 232
AQ
Sbjct: 267 MLAQ 270
>gi|169863349|ref|XP_001838296.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
gi|116500589|gb|EAU83484.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
Length = 340
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 134/239 (56%), Gaps = 20/239 (8%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C +CK ++V + ++GD +C CGLVL VD SEWR FAN+ D DP RVG +
Sbjct: 32 CPECKDPNPQIVEEFASGDLVCGNCGLVLGDRVVDTRSEWRTFANDEGD-DPSRVGAASD 90
Query: 65 PLLSG-GGLSTVIAKPTAGG--STELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLG 121
PL+ G L TVI+ G S EL + +A+SS +RNL+ AF+ IS D+
Sbjct: 91 PLMDGMEQLDTVISFRDGGSGISRELQRAAS---RAQSSRTERNLLTAFRDISNWCDQFS 147
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L TI D A ++YK+ +++K LRG+ EA++AAC++IACRQ + PR+ K+ CS+ + +K
Sbjct: 148 LPKTISDIAKQLYKRTDEEKLLRGKPLEAVIAACIFIACRQAHVPRSFKDICSLTH-VSK 206
Query: 182 KEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNL-------GMTNQAVKAAQE 233
K +G+ K LE Q + +L R+C+ L G+ + AA+E
Sbjct: 207 KMLGQC----YKVLERAFTQVGAAPSSGPEGFLVRYCNYLDLPPNVQGICRDVIVAARE 261
>gi|449549470|gb|EMD40435.1| hypothetical protein CERSUDRAFT_111033 [Ceriporiopsis subvermispora
B]
Length = 351
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 135/246 (54%), Gaps = 11/246 (4%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C +C+ +V + S+GD +C CGLVL VD SEWR FAN+ D DP RVG +
Sbjct: 31 CPECRDPNPNIVEEFSSGDLVCGTCGLVLGDRVVDTRSEWRTFANDEGD-DPSRVGAASD 89
Query: 65 PLLSG-GGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
PL+ G L T I+ GGS ++ +S +RNL+QAF+ IS D+ L
Sbjct: 90 PLMDGMEQLDTTISF-RDGGSGLARELQRAASRSSASRSERNLLQAFRDISNWCDQFSLP 148
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI D A ++YK+ +++K LRG+ +A++AAC++IACRQ + PRT +E C++ + +KK
Sbjct: 149 KTISDIAKQLYKRSDEEKLLRGKPLDAVIAACIFIACRQAHVPRTFREICNLTH-VSKKV 207
Query: 184 IGRAKEFIVKHLEAEMG------QSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQK 237
+G+ + + + G S GT D L R+C++L + + ++K
Sbjct: 208 LGQCYKALEQAFNLTPGASQDRHSSTPSGTTGPEDLLIRYCNHLDLPPNVQPICADVIKK 267
Query: 238 SEDLDI 243
+ +L I
Sbjct: 268 ARELGI 273
>gi|354544056|emb|CCE40778.1| hypothetical protein CPAR2_108140 [Candida parapsilosis]
Length = 353
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 134/254 (52%), Gaps = 21/254 (8%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK +++ S GD +C CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 31 CPECKIFPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 90
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSG-SLGKLQARS--SHPDRNLIQAFKSISAMSDRL 120
NPLL LST+I+ +G L + Q++S D L A+ IS M D
Sbjct: 91 NPLLDTEDLSTMISY----VPDNFKAGRELNRAQSKSLVDKKDNALAAAYAKISQMCDGY 146
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
L ++D A E+YK V D+K LRG++QE+I+AA ++I CR+ RT KE ++ N
Sbjct: 147 QLPKIVQDGAKEVYKMVYDEKRLRGKSQESIMAASIFIGCRKAKVARTFKEIWALTN-VP 205
Query: 181 KKEIG---RAKEFIVKHLEAEMGQS--------VEMGTIHASDYLRRFCSNLGMTNQAVK 229
KKEIG R I++ QS ++ A D +RRFCS+LG+++Q
Sbjct: 206 KKEIGKVFRIMNNIIREKNEANPQSAAYYSQDNIQTTQTSAEDLIRRFCSHLGLSSQVTN 265
Query: 230 AAQEAVQKSEDLDI 243
A+ ++S+D+ +
Sbjct: 266 GAEYIARRSKDVGV 279
>gi|190344839|gb|EDK36597.2| hypothetical protein PGUG_00695 [Meyerozyma guilliermondii ATCC
6260]
Length = 339
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 140/251 (55%), Gaps = 18/251 (7%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK +++ S GD +C CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 25 CPECKTYPPDLIERFSEGDIVCGTCGLVLSDRVVDTRSEWRTFSNDDRNGEDPNRVGDAS 84
Query: 64 NPLLSGGGLSTVIAK-PTAGGSTELLSGSLGKLQARSS--HPDRNLIQAFKSISAMSDRL 120
NPLL LST+I+ P G + LS + Q++S+ D +L+ A+ IS M +
Sbjct: 85 NPLLDSEDLSTMISYVPNDGRAGRDLS----RAQSKSAIDRKDSSLVAAYSKISHMCEGY 140
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
L ++D + EIYK V D+K LRG++QE+I+AA + + CR+ N R+ E ++ N
Sbjct: 141 QLPRVVQDASKEIYKLVHDEKRLRGKSQESIMAASICLGCRKANVGRSFLEIAALTN-VP 199
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVE--------MGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
KKE+GR + +++ L+ + + + + + A D +RRFCS+LG++ Q AA+
Sbjct: 200 KKELGRVFKTMIQLLQEKHSNNPDVMHMTQQPVSSTSAEDLIRRFCSHLGLSTQISNAAE 259
Query: 233 EAVQKSEDLDI 243
++ +D I
Sbjct: 260 YIARRCKDEQI 270
>gi|406859255|gb|EKD12323.1| transcription factor TFIIB [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 352
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 131/235 (55%), Gaps = 22/235 (9%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES-SDHDPVRVGGPL 63
C DCK + +V + S+GD +C CGLVL VD SEWR FAN+ + DP RVG
Sbjct: 25 CKDCKEVPPNLVEEFSSGDMVCGSCGLVLGDRIVDTRSEWRTFANDDQGNDDPSRVGDGA 84
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPD--RNLIQAFKSISAMSDRLG 121
NPLL+G L+T I+ G++ S L + Q +SS+ ++L+ A+K I A D +
Sbjct: 85 NPLLNGSQLTTSIS--FQDGNSR--SRDLMRTQNKSSNDKSTKSLLAAYKEIGAHCDAVN 140
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L ++ D A ++KKVED K +G++QEAI+A C++IACRQ PRT +E ++ +K
Sbjct: 141 LSKSVSDCAKLLFKKVEDAKAFKGKSQEAIIAGCIFIACRQCAVPRTFREIYALTK-VSK 199
Query: 182 KEIGRAKEFIVKHLEAEMG--QSVEMG-----------TIHASDYLRRFCSNLGM 223
K+IGR + + K G Q V G + +A D R+CS LG+
Sbjct: 200 KDIGRTFKALEKFFAQNNGGAQKVVAGVSAEDPYQATTSTNAQDLCVRYCSQLGL 254
>gi|367022010|ref|XP_003660290.1| hypothetical protein MYCTH_2132560 [Myceliophthora thermophila ATCC
42464]
gi|347007557|gb|AEO55045.1| hypothetical protein MYCTH_2132560 [Myceliophthora thermophila ATCC
42464]
Length = 356
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 130/240 (54%), Gaps = 32/240 (13%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFA-NESSDHDPVRVGGPL 63
C DCK +V ++S+GD +C+ CGLVL+ +D SEWR F+ +++ + DP RVG
Sbjct: 30 CPDCKEEPPNLVEEYSSGDMVCASCGLVLDRI-IDTRSEWRTFSGDDNGNDDPSRVGDAP 88
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPD--RNLIQAFKSISAMSDRLG 121
N ++ G L T IA G +L LQ + + + L+QA++ I A++D +
Sbjct: 89 NLMIDGDQLQTSIAFDGKGAK------NLAHLQNKVNQDKGTKALLQAYRDIQALTDSIN 142
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
+ + A I+K V+D K L+G++QEAIVA C++IACRQ N PRT +E + +K
Sbjct: 143 AGAQVANTAKHIFKMVDDNKALKGKSQEAIVAGCIFIACRQTNVPRTFREVYGLTK-VSK 201
Query: 182 KEIGRAKEFIVKHLEA---EMG-------------QSVEMGTIHASDYLRRFCSNLGMTN 225
KEIGR + K LEA +MG Q G+ A + R+CSNLG N
Sbjct: 202 KEIGR----VFKQLEAFLQKMGGEDKVAKATGYTQQYQAKGSTTADELCIRYCSNLGFRN 257
>gi|448086815|ref|XP_004196195.1| Piso0_005644 [Millerozyma farinosa CBS 7064]
gi|359377617|emb|CCE86000.1| Piso0_005644 [Millerozyma farinosa CBS 7064]
Length = 350
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 138/252 (54%), Gaps = 18/252 (7%)
Query: 6 CADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK +++ S GD +C CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 29 CPECKIYPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 88
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL LST+I+ +T++ L + Q++S D L A+ IS M D
Sbjct: 89 NPLLDSEDLSTMIS--YVPDNTKV-GRELNRAQSKSLVDKKDNALAAAYSKISQMCDGYQ 145
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L ++D A E+YK V +++PLRG++QE+I+AA ++I CR+ R+ KE ++ N +
Sbjct: 146 LPRIVQDSAKEVYKLVYEERPLRGKSQESIMAAAIFIGCRKAGVARSFKEIWALTN-VPR 204
Query: 182 KEIGRAKEFIVKHLEAE----------MGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
KEIG+ + +++ + + + +++ A D +RRFCS+LG+ Q AA
Sbjct: 205 KEIGKVFKIMIRIVREKNESDPNAHSLIQDNMQTSQTSAEDLIRRFCSHLGLNTQITNAA 264
Query: 232 QEAVQKSEDLDI 243
+ ++ +D+ +
Sbjct: 265 EYIARRCKDVGV 276
>gi|255730671|ref|XP_002550260.1| transcription initiation factor IIB [Candida tropicalis MYA-3404]
gi|240132217|gb|EER31775.1| transcription initiation factor IIB [Candida tropicalis MYA-3404]
Length = 344
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 134/252 (53%), Gaps = 18/252 (7%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK ++V S GD +C CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 23 CPECKIFPPDLVERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 82
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL LST+I+ +T++ L + Q++S D L A+ IS M D
Sbjct: 83 NPLLDTEDLSTMIS--YVPDNTKV-GRELNRAQSKSLVDKKDNALAAAYVKISQMCDGYQ 139
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L + D A E+YK V D+KPLRG++QE+I+AA ++I CR+ N R+ KE ++ N +
Sbjct: 140 LPKIVSDGAKEVYKMVYDEKPLRGKSQESIMAASIFIGCRKANVARSFKEIWALTN-VPR 198
Query: 182 KEIGRAKEFIVKHLEAEMG----------QSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
KEIG+ + + K + + S+ A D +RRFCS+LG+ Q A
Sbjct: 199 KEIGKVFKIMDKIIREKNAANPNAAYYTQDSISTTQTSAEDLIRRFCSHLGVNAQVTNGA 258
Query: 232 QEAVQKSEDLDI 243
+ ++ +++ +
Sbjct: 259 EYIARRCKEVGV 270
>gi|448082287|ref|XP_004195101.1| Piso0_005644 [Millerozyma farinosa CBS 7064]
gi|359376523|emb|CCE87105.1| Piso0_005644 [Millerozyma farinosa CBS 7064]
Length = 350
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 136/255 (53%), Gaps = 24/255 (9%)
Query: 6 CADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK +++ S GD +C CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 29 CPECKIYPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 88
Query: 64 NPLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSD 118
NPLL LST+I+ T G L + Q++S D L A+ IS M D
Sbjct: 89 NPLLDSEDLSTMISYVPDNTKAGR------ELNRAQSKSLVDKKDNALAAAYAKISQMCD 142
Query: 119 RLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG 178
L ++D A E+YK V +++PLRG++QE+I+AA ++I CR+ R+ KE ++ N
Sbjct: 143 GYQLPRIVQDSAKEVYKLVYEERPLRGKSQESIMAAAIFIGCRKAGVARSFKEIWALTN- 201
Query: 179 TTKKEIGRAKEFIVKHLEAE----------MGQSVEMGTIHASDYLRRFCSNLGMTNQAV 228
+KEIG+ + +++ + + + +++ A D +RRFCS+LG+ Q
Sbjct: 202 VPRKEIGKVFKIMIRIVREKNESDPNAHSLIQDNMQTSQTSAEDLIRRFCSHLGLNTQIT 261
Query: 229 KAAQEAVQKSEDLDI 243
AA+ ++ +D+ +
Sbjct: 262 NAAEYIARRCKDVGV 276
>gi|154292104|ref|XP_001546629.1| hypothetical protein BC1G_14861 [Botryotinia fuckeliana B05.10]
Length = 348
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 134/253 (52%), Gaps = 26/253 (10%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES-SDHDPVRVGGPL 63
C DCK + +V + S+GD +C CG+V+ VD SEWR F+N+ + DP RVG
Sbjct: 22 CKDCKEIPPNLVEEFSSGDLVCDTCGVVIGDRIVDTRSEWRTFSNDDQGNDDPSRVGDAA 81
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR--SSHPDRNLIQAFKSISAMSDRLG 121
NPLL+G LST IA G + + S L + Q + + + L+ A+K I A D +
Sbjct: 82 NPLLNGSQLSTTIA----FGDSSVRSRELYRAQGKQGTDKSTKALLAAYKEIGAHCDAVN 137
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
+ + D A ++K V+D K +G++QEAI+A C++IACRQ PRT +E ++ +K
Sbjct: 138 IPKNVSDTAKHLFKLVDDAKAFKGKSQEAIIAGCIFIACRQCGVPRTFREIYALTK-VSK 196
Query: 182 KEIGRA----KEFIVKHLEAEMGQSVEMGTI------------HASDYLRRFCSNLGMTN 225
K+IGR ++F A+ + G + +A D R+CS LG+ +
Sbjct: 197 KDIGRTFKALEKFFASDSSAKKATADATGALAAPDGYQTTTSTNAKDLCTRYCSQLGLKS 256
Query: 226 QA-VKAAQEAVQK 237
Q VK +Q +K
Sbjct: 257 QQFVKISQGLAEK 269
>gi|347835786|emb|CCD50358.1| similar to transcription initiation factor iib [Botryotinia
fuckeliana]
Length = 350
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 134/253 (52%), Gaps = 26/253 (10%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES-SDHDPVRVGGPL 63
C DCK + +V + S+GD +C CG+V+ VD SEWR F+N+ + DP RVG
Sbjct: 23 CKDCKEIPPNLVEEFSSGDLVCDTCGVVIGDRIVDTRSEWRTFSNDDQGNDDPSRVGDAA 82
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR--SSHPDRNLIQAFKSISAMSDRLG 121
NPLL+G LST IA G + + S L + Q + + + L+ A+K I A D +
Sbjct: 83 NPLLNGSQLSTTIA----FGDSSVRSRELYRAQGKQGTDKSTKALLAAYKEIGAHCDAVN 138
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
+ + D A ++K V+D K +G++QEAI+A C++IACRQ PRT +E ++ +K
Sbjct: 139 IPKNVSDTAKHLFKLVDDAKAFKGKSQEAIIAGCIFIACRQCGVPRTFREIYALTK-VSK 197
Query: 182 KEIGRA----KEFIVKHLEAEMGQSVEMGTI------------HASDYLRRFCSNLGMTN 225
K+IGR ++F A+ + G + +A D R+CS LG+ +
Sbjct: 198 KDIGRTFKALEKFFASDSSAKKATADATGALAAPDGYQTTTSTNAKDLCTRYCSQLGLKS 257
Query: 226 QA-VKAAQEAVQK 237
Q VK +Q +K
Sbjct: 258 QQFVKISQGLAEK 270
>gi|356513820|ref|XP_003525607.1| PREDICTED: LOW QUALITY PROTEIN: transcription initiation factor
IIB-2-like [Glycine max]
Length = 347
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 91/268 (33%), Positives = 145/268 (54%), Gaps = 36/268 (13%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSV-DETSEWRIF-------------- 47
+ YC+DCK T +V+DH+AGDTICSECGLVLE+ S+ +E + R++
Sbjct: 5 EEYCSDCKSYTPLVYDHNAGDTICSECGLVLESRSIEEEIPKLRLYGDKHEDDDDGGGDH 64
Query: 48 -ANESSDHDPVRVGGPLNPLL--SGGGLSTVIAKPTA--GGSTELLSGSLGKLQARSSHP 102
+ V P N LL SG GLST++ P+ +++++ + ++S+
Sbjct: 65 EDEDEHQEQGFSVSDPFNTLLLTSGAGLSTLVTHPSLYDNNNSDMVKTRKNQRGIKNSNR 124
Query: 103 DR--------NLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVED--QKPLRGRNQEAIV 152
D +L+ A ++ M++ LGL +IK+ A E+YKK ED R R+ A +
Sbjct: 125 DAKRKLKTDCDLVAALLTMEQMANNLGLAWSIKNHAKELYKKAEDRRVFRGRRRHSRASM 184
Query: 153 AACLYIACRQENKPRTVKEFCSVANGTTK--KEIGRAKEFIVKHLEAEMGQSVEMGTIHA 210
ACLY+AC++E PRTVKE SV+ G + K I +A KH ++G++ + +
Sbjct: 185 VACLYLACQEEGFPRTVKEIQSVSGGAKEKNKHIYKAIGVFKKHF--QVGRNYDKTQV-- 240
Query: 211 SDYLRRFCSNLGMTNQAVKAAQEAVQKS 238
D R C++LG+ N +KA +E +QK+
Sbjct: 241 LDIGERLCTHLGLDNHVIKAVREVLQKA 268
>gi|116195684|ref|XP_001223654.1| hypothetical protein CHGG_04440 [Chaetomium globosum CBS 148.51]
gi|88180353|gb|EAQ87821.1| hypothetical protein CHGG_04440 [Chaetomium globosum CBS 148.51]
Length = 353
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 89/243 (36%), Positives = 131/243 (53%), Gaps = 38/243 (15%)
Query: 6 CADCK----RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFA-NESSDHDPVRVG 60
C +CK RL E ++S+GD +C CGLVL+ +D SEWR F+ +++ + DP RVG
Sbjct: 27 CPECKEDPPRLVE---EYSSGDMVCETCGLVLDRI-IDTRSEWRTFSGDDNGNDDPSRVG 82
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPD--RNLIQAFKSISAMSD 118
N ++ G L T IA G +L LQ + + + L+QA++ I A++D
Sbjct: 83 DAPNLMIDGDQLQTAIAFDGKGAK------NLAHLQNKINQDKGTKVLLQAYRDIQALTD 136
Query: 119 RLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG 178
+ T + + A I+K V+D K L+G++QEAIVA C++IACRQ N PRT +E +
Sbjct: 137 SINAGTQVANTAKHIFKMVDDNKALKGKSQEAIVAGCIFIACRQTNVPRTFREVYGLTK- 195
Query: 179 TTKKEIGRAKEFIVKHLEA---EMG-------------QSVEMGTIHASDYLRRFCSNLG 222
+KKEIGR + K LE+ +MG Q G+ A + R+CSNLG
Sbjct: 196 VSKKEIGR----VFKQLESFLQKMGGEDKVAKATGYSQQYTAKGSTTADELCIRYCSNLG 251
Query: 223 MTN 225
N
Sbjct: 252 FRN 254
>gi|302307436|ref|NP_984103.2| ADR007Cp [Ashbya gossypii ATCC 10895]
gi|299789000|gb|AAS51927.2| ADR007Cp [Ashbya gossypii ATCC 10895]
gi|374107319|gb|AEY96227.1| FADR007Cp [Ashbya gossypii FDAG1]
Length = 354
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 89/250 (35%), Positives = 134/250 (53%), Gaps = 15/250 (6%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK +VV S GD +C+ CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 28 CPECKVYPPKVVERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGDDPSRVGEAS 87
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL G LST I + GS L+ L + Q++S D L A+ I+ M D
Sbjct: 88 NPLLDGNHLSTRIGQ--VQGSDVKLTRELNRAQSKSIVDKKDNELQAAYAKITMMCDAAE 145
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +KD A E YK +++ L+G++QE+I+A+ + + CR+ RT KE S+ N K
Sbjct: 146 LPRIVKDCAKEAYKLCFEERALKGKSQESIMASVILVGCRRAEVGRTFKEILSLTN-VRK 204
Query: 182 KEIGRAKEFIVKHLEAEMGQ--------SVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
KEIG+ I K L + ++ G +A ++ RFCS+LG++ Q AA+
Sbjct: 205 KEIGKTFNIIKKILREKNDSGFANVDTANISTGQTNAETFIPRFCSHLGLSVQVANAAEY 264
Query: 234 AVQKSEDLDI 243
+ ++D+++
Sbjct: 265 IAKHAKDINV 274
>gi|50422739|ref|XP_459946.1| DEHA2E14762p [Debaryomyces hansenii CBS767]
gi|49655614|emb|CAG88192.1| DEHA2E14762p [Debaryomyces hansenii CBS767]
Length = 346
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 136/252 (53%), Gaps = 18/252 (7%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK +++ S GD +C CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 25 CPECKIFPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 84
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL LST+I+ + L + Q++S D L A+ +S M D
Sbjct: 85 NPLLDTEDLSTMISYVPENTK---VGRELNRAQSKSLVDKKDNALAAAYSKLSQMCDGYQ 141
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L ++D A E+YK V +++PL+G++QE+I+AA ++I CR+ R+ KE ++ N +
Sbjct: 142 LPKIVQDGAKEVYKLVYEERPLKGKSQESIMAAAIFIGCRKAKVARSFKEIWALTN-VPR 200
Query: 182 KEIGRAKEFIVKHLEAE----------MGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
KEIG+ + + K ++ + + +++ A D +RRFCS+LG++ Q AA
Sbjct: 201 KEIGKVFKIMNKIIQEKNAANPNAYSLIQDNMQTTQTSAEDLIRRFCSHLGLSTQVTNAA 260
Query: 232 QEAVQKSEDLDI 243
+ ++ +D+ +
Sbjct: 261 EHIARRCKDVGV 272
>gi|392587013|gb|EIW76348.1| transcription initiation factor IIB [Coniophora puteana RWD-64-598
SS2]
Length = 353
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 127/226 (56%), Gaps = 11/226 (4%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C DC+ +V + +GD +C CGLVL VD SEWR FAN+ D DP RVG +
Sbjct: 33 CPDCRDPNPHIVEEFGSGDLVCGNCGLVLGDRVVDTRSEWRTFANDEGD-DPSRVGAASD 91
Query: 65 PLLSG-GGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
PLL G L TVI+ GGS +++SS +RNL+ AF+ I D+ L
Sbjct: 92 PLLEGMEQLDTVISF-RDGGSGIARELQRAASRSQSSRSERNLLTAFRDIGGWCDQFSLP 150
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI D A ++YK+ +++K LRG+ EA++AAC++IACRQ + PRT +E C++ N +KK
Sbjct: 151 KTISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFREICNLTN-VSKKT 209
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHAS------DYLRRFCSNLGM 223
+G+ + + + G +IH S + L R+C++L +
Sbjct: 210 LGQCYKALEQAFNLTPGSGSGGASIHPSPSTGPENLLVRYCNHLDL 255
>gi|310797049|gb|EFQ32510.1| transcription factor TFIIB [Glomerella graminicola M1.001]
Length = 351
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 123/241 (51%), Gaps = 31/241 (12%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES-SDHDPVRVGGPL 63
C DCK +V + S+GD +C CGLV+ +D SEWR FAN+ + DP RVG +
Sbjct: 28 CPDCKEYPPHLVEEFSSGDMVCGSCGLVVGERIIDTRSEWRTFANDDQGNDDPSRVGDAV 87
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSH--PDRNLIQAFKSISAMSDRLG 121
NPLL+G L T IA S +L +LQ +S + ++L+QA+K I A D +
Sbjct: 88 NPLLNGSQLETTIAFGDGRDSKQL-----ARLQNKSQNDKASKSLMQAYKEIGAFCDSIN 142
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L + D A I+K D ++G+ QEA++A C++IACRQ RT +E V + +K
Sbjct: 143 LGKNVSDAAKHIFKLTYDHNFMKGKPQEAVIAGCIFIACRQTGVGRTFREIFQVTH-VSK 201
Query: 182 KEIGRAKEFIVKHLEAEMGQSVE-----------------MGTIHASDYLRRFCSNLGMT 224
KEIGR + K LE+ + + E + A D RFCSNL
Sbjct: 202 KEIGR----VFKQLESFLQKIKEENPRGAGSLSNLDGYKASASTSAEDLCTRFCSNLNFR 257
Query: 225 N 225
N
Sbjct: 258 N 258
>gi|254565175|ref|XP_002489698.1| Transcription factor TFIIB, a general transcription factor
[Komagataella pastoris GS115]
gi|238029494|emb|CAY67417.1| Transcription factor TFIIB, a general transcription factor
[Komagataella pastoris GS115]
gi|328350117|emb|CCA36517.1| Transcription initiation factor IIB [Komagataella pastoris CBS
7435]
Length = 342
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 135/252 (53%), Gaps = 18/252 (7%)
Query: 6 CADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C DCK E++ S GD IC CGLVL + VD SEWR F N+ + DP RVG
Sbjct: 21 CRDCKVDPPELIERFSEGDVICGLCGLVLSEHIVDMRSEWRTFNNDDQNGDDPSRVGEAQ 80
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL G LST+IA T + L + Q + D L AF IS + +
Sbjct: 81 NPLLDGDQLSTIIAYNT---DNTRMGRELSRAQNSTVADRKDSALQAAFAKISQLCEGFQ 137
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +++ A E+YK V +++ L+G++QE+I+AA + +ACR+ N PR+ KE ++ + K
Sbjct: 138 LPNIVQNGAKEVYKLVYNERSLKGKSQESIMAAAIGLACRKANVPRSFKELWALTD-VPK 196
Query: 182 KEIGRAKEFIVKHLEAE----------MGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
EIG+ + I K ++ + +S+ +A + RFCSNLG++ Q AA
Sbjct: 197 NEIGKVFKIIHKLIQQKHALAGGLLNVQNESIATTQTNAEALIGRFCSNLGLSRQITNAA 256
Query: 232 QEAVQKSEDLDI 243
+ ++++++ +
Sbjct: 257 EYIARRTKEVGV 268
>gi|380487909|emb|CCF37735.1| transcription factor TFIIB [Colletotrichum higginsianum]
Length = 351
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 123/241 (51%), Gaps = 31/241 (12%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES-SDHDPVRVGGPL 63
C DCK +V + S+GD +C CGLV+ +D SEWR FAN+ + DP RVG +
Sbjct: 28 CPDCKEYPPHLVEEFSSGDMVCGSCGLVVGERIIDTRSEWRTFANDDQGNDDPSRVGDAV 87
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSH--PDRNLIQAFKSISAMSDRLG 121
NPLL+G L T IA S +L +LQ +S + ++L+QA+K I A D +
Sbjct: 88 NPLLNGSQLETTIAFGDGRDSKQL-----ARLQNKSQNDKASKSLMQAYKEIGAFCDSIN 142
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L + D A I+K D ++G+ QEA++A C++IACRQ RT +E V + +K
Sbjct: 143 LGKNVSDAAKHIFKLTYDHNFMKGKPQEAVIAGCIFIACRQTGVGRTFREIFQVTH-VSK 201
Query: 182 KEIGRAKEFIVKHLEAEMGQSVE-----------------MGTIHASDYLRRFCSNLGMT 224
KEIGR + K LE+ + + E + A D RFCSNL
Sbjct: 202 KEIGR----VFKQLESFLQKIKEENPRGAGSLSNLDGYKASASTSAEDLCTRFCSNLNFR 257
Query: 225 N 225
N
Sbjct: 258 N 258
>gi|260941562|ref|XP_002614947.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238851370|gb|EEQ40834.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 349
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 128/241 (53%), Gaps = 18/241 (7%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK +++ S GD +C CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 25 CPECKIFPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 84
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL LST+I+ L + Q++S D L A+ IS M D
Sbjct: 85 NPLLDTEDLSTMISYVPENVKA---GRELNRAQSKSLVDKKDNALSAAYAKISQMCDGYQ 141
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L ++D A E+YK V D++ LRG++QE+I+AA ++I CR+ RT KE ++ N K
Sbjct: 142 LPKIVQDGAKEVYKLVHDERLLRGKSQESIMAAAIFIGCRKAKVARTFKEIWALTN-VPK 200
Query: 182 KEIGRAKEFIVKHLEAE----------MGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
KEIG+ + I + ++ + + S + A D +RRFCS+LG++N+ AA
Sbjct: 201 KEIGKVFKIIKRVIQEKNETNPGAYSLIKDSEQTTQTSAEDLIRRFCSHLGLSNEVTNAA 260
Query: 232 Q 232
+
Sbjct: 261 E 261
>gi|302692026|ref|XP_003035692.1| hypothetical protein SCHCODRAFT_50631 [Schizophyllum commune H4-8]
gi|300109388|gb|EFJ00790.1| hypothetical protein SCHCODRAFT_50631 [Schizophyllum commune H4-8]
Length = 331
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 109/182 (59%), Gaps = 5/182 (2%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C +C+ T ++ + +GD +C CGLVL +D SEWR FAN+ D DP RVG +
Sbjct: 20 CPECREATPDIREEFGSGDLVCGACGLVLGDRIIDTRSEWRTFANDEGD-DPSRVGAATD 78
Query: 65 PLLSG-GGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
PLL G L TVI+ GGS +A+ S +RN++ AF+ IS D+ L
Sbjct: 79 PLLEGIEQLDTVISF-RDGGSGVARELQRAATRAQGSRSERNILTAFRDISTRCDQFALP 137
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI D A ++YK+V D+ L+G+ QEAI AAC++IACRQ + PRT +EFC + + +KK
Sbjct: 138 KTISDIAKQLYKRVHDEGVLKGKPQEAITAACIFIACRQAHVPRTFREFCDLTH-VSKKL 196
Query: 184 IG 185
+G
Sbjct: 197 LG 198
>gi|452839736|gb|EME41675.1| hypothetical protein DOTSEDRAFT_135117 [Dothistroma septosporum
NZE10]
Length = 358
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 132/246 (53%), Gaps = 26/246 (10%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS-DHDPVRVGGPL 63
C DC+ E+ DH++GD IC+ECGLVL+ +D +SEWR F+N+ + DP RVG
Sbjct: 33 CKDCRTDPPELYEDHASGDLICAECGLVLQERGIDTSSEWRTFSNDDQGNDDPSRVGDGP 92
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSS--HPDRNLIQAFKSISAMSDRLG 121
N LL+G L+T IA + S L + Q +S+ ++ L+ A+K I A+ D
Sbjct: 93 NALLNGAQLNTSIAFGDG-----IRSKELHRAQNKSNLDKGNKTLLVAYKQIGALCDNWD 147
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L + + D A +YK ++ + +G++QEA++A C+++ACR+ N PR+ +E + +K
Sbjct: 148 LPSMVSDTAKHLYKDADESRVFKGKSQEALIAGCVFLACRRNNVPRSFREVMELTK-VSK 206
Query: 182 KEIGRA----KEFIVKHLEAEMGQSVEMGTIHASDYLR------------RFCSNLGMTN 225
KEIGR + F++ + GT+ +D + R+C+ L M+
Sbjct: 207 KEIGRTFKMLETFLMGKEKERQANGTNTGTVVFNDAYKGSTTSDPSEMCARWCNMLSMSQ 266
Query: 226 QAVKAA 231
QA A
Sbjct: 267 QASNVA 272
>gi|429860053|gb|ELA34805.1| transcription initiation protein [Colletotrichum gloeosporioides
Nara gc5]
Length = 555
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 123/241 (51%), Gaps = 31/241 (12%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS-DHDPVRVGGPL 63
C DCK +V + S+GD +C CGLV+ +D SEWR FAN+ + DP RVG +
Sbjct: 232 CPDCKEYPPNLVEEFSSGDMVCGSCGLVVGERIIDTRSEWRTFANDDQGNDDPSRVGDAV 291
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSH--PDRNLIQAFKSISAMSDRLG 121
NPLL+G L T IA S +L +LQ +S + ++L+QA+K I A D +
Sbjct: 292 NPLLNGSQLETTIAFGDGRDSKQL-----ARLQNKSQNDKASKSLMQAYKEIGAFCDSIN 346
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L + D A I+K D ++G+ QEA++A C++IACRQ RT +E V + +K
Sbjct: 347 LGKNVSDAAKHIFKLTYDHNFMKGKPQEAVIAGCIFIACRQTGVGRTFREIFQVTH-VSK 405
Query: 182 KEIGRAKEFIVKHLEAEMGQSVE-----------------MGTIHASDYLRRFCSNLGMT 224
KEIGR + K LE+ + + E + A D RFCSNL
Sbjct: 406 KEIGR----VFKQLESFLQKIKEENPRGAGSLSNLDGYKASASTSAEDLCTRFCSNLNFR 461
Query: 225 N 225
N
Sbjct: 462 N 462
>gi|336270348|ref|XP_003349933.1| hypothetical protein SMAC_00825 [Sordaria macrospora k-hell]
gi|380095322|emb|CCC06795.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 348
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/239 (35%), Positives = 126/239 (52%), Gaps = 27/239 (11%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS-DHDPVRVGGPL 63
C +CK +V + S+GD +C +CGLVL +D SEWR F+N+ + DP RVG
Sbjct: 25 CPECKEDPPHLVEEFSSGDMVCGDCGLVLGERIIDTRSEWRTFSNDDQGNDDPSRVGDGP 84
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRN---LIQAFKSISAMSDRL 120
N L+ G L T IA G +L LQ + + D+N L+QA++ I ++D +
Sbjct: 85 NQLIDGDQLQTTIAFDGKNGK------NLSHLQNKITQ-DKNSKQLMQAYRDIQGLTDSI 137
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
T + + A IYK VED K L+G++QEAI A C++IACRQ PRT +E S+ +
Sbjct: 138 NAGTQVANAAKHIYKLVEDNKALKGKSQEAITAGCIFIACRQTGVPRTFREIYSLTK-VS 196
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEM--------------GTIHASDYLRRFCSNLGMTN 225
KKEIGR + + L+ G+ + G+ A++ R+CSNL N
Sbjct: 197 KKEIGRVFKQLESFLQKIGGEEHAITTSIPTFNQQYQGKGSTTATELCARYCSNLNFRN 255
>gi|363752235|ref|XP_003646334.1| hypothetical protein Ecym_4477 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889969|gb|AET39517.1| hypothetical protein Ecym_4477 [Eremothecium cymbalariae
DBVPG#7215]
Length = 354
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 135/250 (54%), Gaps = 15/250 (6%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK +VV S GD +C+ CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 28 CPECKVYPPKVVERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGDDPSRVGEAS 87
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL G LST I + A GS L+ L + Q++S D L ++ I+ M D
Sbjct: 88 NPLLDGNHLSTRIGQ--AQGSDVKLTRELNRAQSKSIVDKKDNELQASYAKITMMCDAAE 145
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +KD A E YK +++ L+G++QE+I+A+ + + CR+ R+ KE S+ N K
Sbjct: 146 LPKIVKDCAKEAYKLCFEERALKGKSQESIMASVILLGCRRAEVGRSFKEILSLTN-VRK 204
Query: 182 KEIGRAKEFIVKHLEAEMGQ--------SVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
KEIG+ I K L + + ++ G A ++ RFCS+LG++ Q AA+
Sbjct: 205 KEIGKTLNIIKKILREKNDRGFVNIDTANISTGQTSAETFIPRFCSHLGLSVQVANAAEY 264
Query: 234 AVQKSEDLDI 243
+ ++D+++
Sbjct: 265 IAKHAKDINV 274
>gi|392568456|gb|EIW61630.1| transcription initiation factor IIB [Trametes versicolor FP-101664
SS1]
Length = 351
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 135/251 (53%), Gaps = 21/251 (8%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C +C+ +V + S+GD +C CGLVL VD SEWR FAN+ D DP RVG +
Sbjct: 31 CPECRDPNPNIVEEFSSGDLVCGTCGLVLGDRIVDTRSEWRTFANDEGD-DPSRVGAASD 89
Query: 65 PLLSG-GGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDR-----NLIQAFKSISAMSD 118
PL+ G L T I+ G SG +LQ +S NL+QAF+ I+ D
Sbjct: 90 PLMEGMEQLDTTISFRDGG------SGIARELQRAASRSAASRSERNLLQAFRDIAGWCD 143
Query: 119 RLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG 178
+ L TI D A ++YK+ +++K LRG+ EA++AAC++IACRQ + PRT +E C++ +
Sbjct: 144 QFSLPKTISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFREICNLTH- 202
Query: 179 TTKKEIGRAKEFIVKHLEAEMGQSVEM------GTIHASDYLRRFCSNLGMTNQAVKAAQ 232
+KK +G+ + + + G S + GT A D L R+C++L +
Sbjct: 203 VSKKVLGQCYKALEQAFNLTPGASQDRHLNAPSGTTGAEDLLVRYCNHLDLPPNVQPICG 262
Query: 233 EAVQKSEDLDI 243
+ + K+ +L I
Sbjct: 263 DIIVKARELGI 273
>gi|403413738|emb|CCM00438.1| predicted protein [Fibroporia radiculosa]
Length = 353
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/249 (34%), Positives = 138/249 (55%), Gaps = 15/249 (6%)
Query: 6 CADCKRLTE-VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C +C+ +V + S+GD +C CGLVL VD SEWR FAN+ D DP RVG +
Sbjct: 31 CPECRDPNPAIVEEFSSGDLVCGTCGLVLGDRVVDTRSEWRTFANDEGD-DPSRVGAASD 89
Query: 65 PLLSG-GGLSTVIAKPTAG-GSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGL 122
PL+ G L T I+ G G L + + QA S +RNL+QAF+ I++ D+ L
Sbjct: 90 PLMEGMEQLDTTISFRDGGSGIARELQRAASRSQASRS--ERNLLQAFRDIASWCDQFSL 147
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
TI D A ++YK+ +++K LRG+ +A++AAC++IACRQ + PRT +E C++ + +KK
Sbjct: 148 PKTISDIAKQLYKRSDEEKLLRGKPLDAVIAACIFIACRQAHVPRTFREICNLTH-VSKK 206
Query: 183 EIGRAKEFIVKHLEAEMGQSV----EMGTIHAS----DYLRRFCSNLGMTNQAVKAAQEA 234
+G+ + + + G S + T A+ D L R+C++L + +
Sbjct: 207 VLGQCYKALEQAFNLTPGASATTDRHLTTPAAARGPEDLLVRYCNHLDLPPNVQPICSDI 266
Query: 235 VQKSEDLDI 243
+ ++ +L I
Sbjct: 267 IIQARELGI 275
>gi|85068255|ref|XP_962143.1| hypothetical protein NCU07289 [Neurospora crassa OR74A]
gi|28923740|gb|EAA32907.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 348
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/239 (35%), Positives = 125/239 (52%), Gaps = 27/239 (11%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS-DHDPVRVGGPL 63
C +CK +V + S+GD +C CGLVL +D SEWR F+N+ + DP RVG
Sbjct: 25 CPECKEDPPHLVEEFSSGDMVCGSCGLVLGERIIDTRSEWRTFSNDDQGNDDPSRVGDGP 84
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRN---LIQAFKSISAMSDRL 120
N L+ G L T IA G +L LQ + + D+N L+QA++ I ++D +
Sbjct: 85 NQLIDGDQLQTTIAFDGKNGK------NLSHLQNKITQ-DKNSKQLMQAYRDIQGLTDSI 137
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
T + + A IYK VED K L+G++QEAI A C++IACRQ PRT +E S+ +
Sbjct: 138 NAGTQVANAAKHIYKLVEDNKALKGKSQEAITAGCIFIACRQTGVPRTFREIYSLTK-VS 196
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEM--------------GTIHASDYLRRFCSNLGMTN 225
KKEIGR + + L+ G+ + G+ A++ R+CSNL N
Sbjct: 197 KKEIGRVFKQLESFLQKIGGEEHAITTSIPTFNQQYQGKGSTTATELCARYCSNLNFRN 255
>gi|336471507|gb|EGO59668.1| hypothetical protein NEUTE1DRAFT_39488 [Neurospora tetrasperma FGSC
2508]
gi|350292608|gb|EGZ73803.1| cyclin-like protein [Neurospora tetrasperma FGSC 2509]
Length = 348
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/239 (35%), Positives = 125/239 (52%), Gaps = 27/239 (11%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS-DHDPVRVGGPL 63
C +CK +V + S+GD +C CGLVL +D SEWR F+N+ + DP RVG
Sbjct: 25 CPECKEDPPHLVEEFSSGDMVCGSCGLVLGERIIDTRSEWRTFSNDDQGNDDPSRVGDGP 84
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRN---LIQAFKSISAMSDRL 120
N L+ G L T IA G +L LQ + + D+N L+QA++ I ++D +
Sbjct: 85 NQLIDGDQLQTTIAFDGKNGK------NLSHLQNKITQ-DKNSKQLMQAYRDIQGLTDSI 137
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
T + + A IYK VED K L+G++QEAI A C++IACRQ PRT +E S+ +
Sbjct: 138 NAGTQVANAAKHIYKLVEDNKALKGKSQEAITAGCIFIACRQTGVPRTFREIYSLTK-VS 196
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEM--------------GTIHASDYLRRFCSNLGMTN 225
KKEIGR + + L+ G+ + G+ A++ R+CSNL N
Sbjct: 197 KKEIGRVFKQLESFLQKIGGEEHAITTSIPTFNQQYQGKGSTTATELCARYCSNLNFRN 255
>gi|299748194|ref|XP_002911260.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
gi|298407858|gb|EFI27766.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
Length = 346
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 128/225 (56%), Gaps = 12/225 (5%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C +CK +V + +GD +C CGLVL +D SEWR FAN+ D DP RVG +
Sbjct: 30 CPECKDPNPNIVEEFGSGDLVCGNCGLVLGDRVIDTRSEWRTFANDEGD-DPSRVGAASD 88
Query: 65 PLLSG-GGLSTVIAKPTAGGSTELLSGSLGKLQARSSH--PDRNLIQAFKSISAMSDRLG 121
PLL G L TVI+ G ++ L + +RS + +RNL+ AF+ IS D+
Sbjct: 89 PLLEGIEQLDTVISFRDGGSG---IARELQRAASRSQNNRSERNLLTAFRDISNWCDQFS 145
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L TI D A ++YK+ +++K LRG+ EA++AAC++IACR+ + PRT +E C++ +K
Sbjct: 146 LPKTISDIAKQLYKRADEEKLLRGKPVEAVIAACIFIACRKAHVPRTFREICNLTR-VSK 204
Query: 182 KEIGRAKEFIVKHLEAEMGQSVEMG---TIHASDYLRRFCSNLGM 223
K +G+ + + + L +S+ + T L R+C++L +
Sbjct: 205 KMLGQCYKALEQSLNLSGPESMPLANTPTTGPEKLLVRYCNHLDL 249
>gi|402226301|gb|EJU06361.1| TFIIB-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 358
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 87/238 (36%), Positives = 127/238 (53%), Gaps = 28/238 (11%)
Query: 6 CADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C +CK + +V +S+GD +C CG+VL +D SEWR FANE D DP RVG +
Sbjct: 32 CPECKDPVPNIVEQYSSGDLVCGSCGMVLGDRIIDTRSEWRTFANEEGD-DPSRVGAASD 90
Query: 65 PLLSG-GGLSTVIAKPTAG-GSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGL 122
PL+ G L TVI+ G G L + K QA + +++ FK IS D + L
Sbjct: 91 PLMDGMEQLDTVISFQDGGSGLARELQRASAKTQAFKD--GKTMMEGFKKISQFCDSISL 148
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
I D A ++YK+VE+ + L+G+ +AIVAAC++IACRQ + PRT +E C++ KK
Sbjct: 149 PKVISDTAKQLYKRVEEDRILKGKRMDAIVAACIFIACRQGHVPRTFREICNITK-VNKK 207
Query: 183 EIGRAKEFIVKHLEAEMGQSVEMGT--------IH---------ASDYLRRFCSNLGM 223
+G+ K +EA +V G IH A + + RFC++LG+
Sbjct: 208 ALGQC----YKAMEAYFRLNVSGGATSSTNRVDIHLAGSGSKASAEELIPRFCNHLGL 261
>gi|149244370|ref|XP_001526728.1| transcription initiation factor IIB [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449122|gb|EDK43378.1| transcription initiation factor IIB [Lodderomyces elongisporus NRRL
YB-4239]
Length = 349
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 133/256 (51%), Gaps = 25/256 (9%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK +++ S GD +C CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 27 CPECKIFPPDLIERFSEGDIVCGSCGLVLSDRMVDTRSEWRTFSNDDQNGDDPSRVGDAG 86
Query: 64 NPLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSD 118
NPLL LST+I+ T G L + Q +S D L A+ IS M D
Sbjct: 87 NPLLDTEDLSTMISYVPDNTKAGR------ELTRAQQKSLVDKKDNALAAAYVKISQMCD 140
Query: 119 RLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG 178
L ++D A E+YK V ++K LRG++QE+I+AA ++I CR+ R KE ++ N
Sbjct: 141 GYQLPKIVQDGAKEVYKMVYEEKSLRGKSQESIMAASIFIGCRKAKVARLFKEIWALTN- 199
Query: 179 TTKKEIG---RAKEFIVKHLEAEMGQS--------VEMGTIHASDYLRRFCSNLGMTNQA 227
KKEIG R + I++ A Q+ ++ A D +RRFCS+LG+ Q
Sbjct: 200 VPKKEIGKVFRIMDRIIQENHAANPQTAAYYSHENIQTTQTSAEDLIRRFCSHLGLNTQV 259
Query: 228 VKAAQEAVQKSEDLDI 243
AA+ ++++++ +
Sbjct: 260 TNAAEHIARRAKEVGV 275
>gi|452989000|gb|EME88755.1| hypothetical protein MYCFIDRAFT_159927 [Pseudocercospora fijiensis
CIRAD86]
Length = 362
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 87/252 (34%), Positives = 134/252 (53%), Gaps = 29/252 (11%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES-SDHDPVRVGGPL 63
C DC+ ++ DH++GD IC CGLVL+ S+D +SEWR F+N+ + DP RVG
Sbjct: 32 CRDCREDPPDLREDHASGDLICGSCGLVLQERSIDTSSEWRTFSNDDQGNDDPSRVGDGP 91
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
N LL+G L+T IA G ++ L + K A ++ L+QA+K I A+ D L
Sbjct: 92 NALLNGAQLNTSIAFGDGGIRSKELHRAQNK--ANLDKGNKTLLQAYKQIGALCDGWQLP 149
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
++ D A I+K ++ + +G++QEA++A C+++ACR+ N R+ +E + +KKE
Sbjct: 150 NSVSDTAKHIFKDADESRLFKGKSQEALIAGCVFLACRRNNVARSFREVMELTK-VSKKE 208
Query: 184 IGRAKEFIVKHL---EAEMGQS-----VEMGTI------------HASDYLRRFCSNLGM 223
IGR + + L E + G S V GT+ +D +RFCS L M
Sbjct: 209 IGRTFKLLENFLMNKEKDKGASGATSMVAGGTVVYNEQYKGSTSSDPADLCQRFCSQLDM 268
Query: 224 ----TNQAVKAA 231
TN A+ A
Sbjct: 269 DQRTTNMAIALA 280
>gi|115396260|ref|XP_001213769.1| transcription initiation factor IIB [Aspergillus terreus NIH2624]
gi|114193338|gb|EAU35038.1| transcription initiation factor IIB [Aspergillus terreus NIH2624]
Length = 351
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 113/194 (58%), Gaps = 5/194 (2%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +CK + + + +T+C CGLVL +D SEWR F+N+ ++D P RVG +N
Sbjct: 26 CPECKEVPPNLEFPGSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDAVN 85
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T IA +GGS + + + S ++ L+ A+K I A+ D G+
Sbjct: 86 PLLNGDQLETQIA---SGGSGRVRDLYRAQNKQSSEKANKALLAAYKEIGALCDGWGIQK 142
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACRQ N PRT +E +V ++KEI
Sbjct: 143 NVADTAKYLFKTVDDAKAFKGKSQDVIIAGCIFIACRQRNVPRTFQEIFAVTK-VSRKEI 201
Query: 185 GRAKEFIVKHLEAE 198
GR + + K +A+
Sbjct: 202 GRIYKALEKFFQAQ 215
>gi|322708771|gb|EFZ00348.1| transcription initiation protein [Metarhizium anisopliae ARSEF 23]
Length = 347
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 82/254 (32%), Positives = 136/254 (53%), Gaps = 24/254 (9%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH---DPVRVGG 61
C DCK + +V + S+GD +C CG+V+ +D SEWR FAN+ DH DP RVGG
Sbjct: 23 CPDCKEIPPNLVEEFSSGDMVCQSCGVVVGTRIIDTRSEWRTFAND--DHGGDDPSRVGG 80
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLG 121
P + + G L+T +A + L S + A + L+QA+K I ++ + +
Sbjct: 81 PQDEFVEGEQLATTVAFSESKAHKAL---SRTQNNANQDKAQKGLMQAYKEIVSLCEAIN 137
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
+ + + A I+K V+ K ++G+ QEA++A C++IACRQ N PRT +E ++ + +K
Sbjct: 138 MGQNVSNAAKHIFKLVDKHKFMKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTS-VSK 196
Query: 182 KEIGRA----KEFIVKHLEAEMGQSVEMGT--------IHASDYLRRFCSNLGMTNQA-- 227
KE+GR ++F+ K + E + + T + A D R+ S LG NQ
Sbjct: 197 KEVGRVFKQLQKFLQKLQDTEGEGATGLNTVTNYENTSVGAEDLCSRYVSQLGFKNQQKI 256
Query: 228 VKAAQEAVQKSEDL 241
K +++ +K+ D+
Sbjct: 257 SKISRDLAEKANDI 270
Score = 37.4 bits (85), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT---VKEFCSVANGTTK---KEIG 185
++ +K D L GR+ ++ AAC+Y+AC +PR+ + + V++GT K K +
Sbjct: 262 DLAEKANDISALAGRSPLSVAAACIYMACHLVGEPRSSLPIAKQAGVSDGTVKTAYKHLF 321
Query: 186 RAKEFIVKHLEAEMGQSVE 204
A+E ++K E G S++
Sbjct: 322 AAREQLIKKEWLEDGGSMD 340
>gi|50307385|ref|XP_453671.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|464871|sp|Q05959.1|TF2B_KLULA RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|173289|gb|AAA35258.1| human TFIIB homologue protein [Kluyveromyces lactis]
gi|49642805|emb|CAH00767.1| KLLA0D13640p [Kluyveromyces lactis]
Length = 357
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 90/252 (35%), Positives = 137/252 (54%), Gaps = 19/252 (7%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK +VV S GD +C+ CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 28 CPECKVYPPKVVERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGDDPSRVGEAS 87
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL G L+T I + A GS ++ L + Q++S D L A+ I+ M D
Sbjct: 88 NPLLDGNHLTTRIGQ--AQGSDARVTRDLNRAQSKSIVDKKDNELQAAYAKITMMCDAAE 145
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +KD A E YK +++ L+G++QE+I+A+ + + CR+ R+ KE S+ N K
Sbjct: 146 LPKIVKDCAKEAYKLCFEERVLKGKSQESIMASVILVGCRRAEVGRSFKEILSLTN-VRK 204
Query: 182 KEIGRAKEF-IVKHLEAEMGQ---------SVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
KEIG K F I+K++ E ++ G A ++ RFCS+LG++ Q AA
Sbjct: 205 KEIG--KTFTIIKNILREKNDRGFANIDTSNITTGQTSAETFIPRFCSHLGLSVQVANAA 262
Query: 232 QEAVQKSEDLDI 243
+ + S+D+++
Sbjct: 263 EYIAKHSKDVNV 274
>gi|332025651|gb|EGI65813.1| Transcription initiation factor IIB [Acromyrmex echinatior]
Length = 308
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 70/144 (48%), Positives = 96/144 (66%), Gaps = 7/144 (4%)
Query: 100 SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIA 159
S DR L+ AF+ I+ M+DR+ L TI DRAN ++K+V D K L+GR +AI +ACLYIA
Sbjct: 100 SSSDRTLLNAFREINGMADRINLPKTIVDRANTLFKQVHDGKNLKGRANDAIASACLYIA 159
Query: 160 CRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCS 219
CRQE PRT KE C+V+ +KKEIGR + I+K LE SV++ I D++ RFCS
Sbjct: 160 CRQEGVPRTFKEICAVSK-ISKKEIGRCFKLILKALET----SVDL--ITTGDFMSRFCS 212
Query: 220 NLGMTNQAVKAAQEAVQKSEDLDI 243
NLG+ N +AA +K+ ++DI
Sbjct: 213 NLGLPNMVQRAATHIARKAVEIDI 236
>gi|339233058|ref|XP_003381646.1| putative transcription factor TFIIB repeat-containing domain
protein [Trichinella spiralis]
gi|316979508|gb|EFV62300.1| putative transcription factor TFIIB repeat-containing domain
protein [Trichinella spiralis]
Length = 1339
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 102/170 (60%), Gaps = 33/170 (19%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
E++ DH AGD IC ECGLV+ VD +SEWR F+++S+ DP RVG P N L+SGGGL+
Sbjct: 13 ELIEDHRAGDMICMECGLVVGDRIVDVSSEWRSFSSDSNSKDPSRVGSPENNLMSGGGLA 72
Query: 74 TVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEI 133
T IA GGS E S SL LQ R + D+AN +
Sbjct: 73 TSIA---GGGSDE--SRSLSNLQKRQA---------------------------DQANLL 100
Query: 134 YKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+K+V++ K L+G+N +A+ +ACLYIACR++ PRT KE C+V+ +KKE
Sbjct: 101 FKQVQETKALKGKNNDAVASACLYIACRKDGVPRTFKEICAVSK-LSKKE 149
>gi|150866589|ref|XP_001386238.2| hypothetical protein PICST_85155 [Scheffersomyces stipitis CBS
6054]
gi|149387845|gb|ABN68209.2| general RNA polymerase II transcription factor, TFIIB subunit
[Scheffersomyces stipitis CBS 6054]
Length = 350
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/252 (34%), Positives = 132/252 (52%), Gaps = 18/252 (7%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK +++ S GD +C CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 29 CPECKIFPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 88
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL LST+I+ + L + Q++S D L A+ IS M D
Sbjct: 89 NPLLDTEDLSTMISYVP---ENTRVGRELNRAQSKSLVDKKDNALAAAYAKISQMCDGYQ 145
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L ++D A E+YK V D++PLRG++QE+I+AA ++I CR+ R+ KE ++ N +
Sbjct: 146 LPKIVQDGAKEVYKLVYDERPLRGKSQESIMAAAIFIGCRKAKVARSFKEIWALTN-VPR 204
Query: 182 KEIGRAKEFIVKHLE--------AEMGQSVEMGTIH--ASDYLRRFCSNLGMTNQAVKAA 231
KEIG+ + I K ++ A M M T A D +RR CS+LG+ Q A
Sbjct: 205 KEIGKVFKIIDKVIQEKNAANPNALMFNQDNMQTTQTTAEDLIRRNCSHLGLNAQVTNGA 264
Query: 232 QEAVQKSEDLDI 243
+ ++ +++ +
Sbjct: 265 EYIARRCKEVGV 276
>gi|340960457|gb|EGS21638.1| hypothetical protein CTHT_0035020 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 352
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/235 (36%), Positives = 127/235 (54%), Gaps = 28/235 (11%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS-DHDPVRVGGPL 63
C DCK ++ + S+GD +C CGLV+ +D SEWR F+N+ + DP RVG
Sbjct: 29 CKDCKEFPPNLIEEFSSGDMVCGSCGLVVGDRIIDTRSEWRTFSNDDQGNDDPSRVGDAP 88
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKL-QARSSHPDRNLIQAFKSISAMSDRLGL 122
N ++ G L T IA G + LS K+ Q ++S + L+QA++ I +++D +
Sbjct: 89 NLMIDGDQLQTTIAY-GEGKNARNLSHLQNKVNQDKAS---KALLQAYRDIQSLTDSINT 144
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+ + + A IYK VED K L+G++QEAI+A C++IACRQ PRT +E + +KK
Sbjct: 145 GSQVANAAKHIYKLVEDNKALKGKSQEAIIAGCIFIACRQMGVPRTFREIYGLTK-VSKK 203
Query: 183 EIGRAKEFIVKHLEA---EMG-------------QSVEMGTIHASDYLRRFCSNL 221
EIGR + K LEA +MG Q G+ A + R+CSNL
Sbjct: 204 EIGR----VFKQLEAFLQKMGGEEQVAQTSIFTAQYQAKGSTSAPELCARYCSNL 254
>gi|11498897|ref|NP_070128.1| transcription initiation factor IIB [Archaeoglobus fulgidus DSM
4304]
gi|14195234|sp|O28970.1|TF2B_ARCFU RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|2649280|gb|AAB89947.1| transcription initiation factor IIB [Archaeoglobus fulgidus DSM
4304]
Length = 326
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 133/248 (53%), Gaps = 19/248 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D+ G+ IC +CGLV+E +D EWR F +E D RVG P+
Sbjct: 30 CPECGS-PRLIRDYRRGEFICQDCGLVIEDTYIDAGPEWRAFDSEQRDKRS-RVGAPVTY 87
Query: 66 LLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSISA 115
+ GLST+I K G + + + + L K Q R S+ +RNL A +
Sbjct: 88 TIHDKGLSTIIDWSNKDYYGKAISVRNRAQLFRLRKWQRRIRISNATERNLAFALSELDR 147
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL ++++ A IY+K ++ +RGR+ E +VAA LY ACRQ PRT+ E +
Sbjct: 148 MASALGLPKSVRETAAVIYRKAVEKNLIRGRSIEGVVAAALYAACRQAGVPRTLDEIATY 207
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR FI + L +++ +DY+ RFC+ LG++ + K A E +
Sbjct: 208 SR-VDRKEIGRTYRFITREL------GLKLMPTSPADYIPRFCAALGLSGEVQKKAIEII 260
Query: 236 QKSEDLDI 243
+K+E+ ++
Sbjct: 261 KKAEEREL 268
Score = 37.4 bits (85), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%)
Query: 120 LGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179
LGL ++ +A EI KK E+++ GR + AA LY+A + RT +E VA T
Sbjct: 246 LGLSGEVQKKAIEIIKKAEERELTSGRGPTGVAAAALYVASILLGERRTQREVAEVAGVT 305
Query: 180 TKKEIGRAKEFIVK 193
R KE K
Sbjct: 306 EVTIRNRYKELAEK 319
>gi|344304701|gb|EGW34933.1| hypothetical protein SPAPADRAFT_58062 [Spathaspora passalidarum
NRRL Y-27907]
Length = 347
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/252 (32%), Positives = 132/252 (52%), Gaps = 17/252 (6%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK +++ S GD +C CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 25 CPECKIFPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 84
Query: 64 NPLLSGGGLSTVIAK-PTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGL 122
NPLL LST+I+ P + L+ + K D L A++ IS M + L
Sbjct: 85 NPLLDTEDLSTMISYVPENSRAGRELNRAHQKNTV--DKKDNALAAAYQKISQMCEGYQL 142
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
++D A E+YK V D+KPLRG++QE+I+AA ++I CR+ R+ KE ++ N +K
Sbjct: 143 PKIVQDGAKEVYKMVHDEKPLRGKSQESIMAASIFIGCRKAKVARSFKEIWALTN-VPRK 201
Query: 183 EIGRAKEFIVKHLEAEMG-----------QSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
EIG+ + + K + + +++ A D +RRFCS+LG+ Q A
Sbjct: 202 EIGKVFKIMDKVIREKNAANPTNAIYFSQDNIQTTQTSAEDLIRRFCSHLGLHTQVTNGA 261
Query: 232 QEAVQKSEDLDI 243
+ ++ +++ +
Sbjct: 262 EYIARRCKEVGV 273
>gi|255716964|ref|XP_002554763.1| KLTH0F13200p [Lachancea thermotolerans]
gi|238936146|emb|CAR24326.1| KLTH0F13200p [Lachancea thermotolerans CBS 6340]
Length = 359
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 130/250 (52%), Gaps = 15/250 (6%)
Query: 6 CADCKRLTEVVFDH-SAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK V + S GD +C+ CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 28 CPECKIYPPKVAERFSEGDVVCAMCGLVLSDRIVDTRSEWRTFSNDDQNGDDPSRVGEAS 87
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL G LST I + A GS + L + Q++S D L A+ I+ M D
Sbjct: 88 NPLLDGNHLSTRIGQ--AQGSDVKFTRDLNRAQSKSIVDKKDNELQAAYAKITMMCDAAE 145
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +KD A E YK +++ L+G++QE+I+A+ + + CR+ R+ KE S+ N K
Sbjct: 146 LPKIVKDCAKEAYKICYEERALKGKSQESIMASVILVGCRRAEVGRSFKEILSLTN-VKK 204
Query: 182 KEIGRAKEFIVKHLEAEMGQ--------SVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
KEIG+ I L + ++ G A ++ RFCS+LG++ Q AA+
Sbjct: 205 KEIGKTFTIIKSILREKNANGFANIDTATISSGQTSAETFIPRFCSHLGLSVQIANAAEY 264
Query: 234 AVQKSEDLDI 243
+ +D+++
Sbjct: 265 TAKHCKDINV 274
>gi|449297000|gb|EMC93019.1| hypothetical protein BAUCODRAFT_270595 [Baudoinia compniacensis
UAMH 10762]
Length = 360
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 132/242 (54%), Gaps = 24/242 (9%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES-SDHDPVRVGGPL 63
C DC+ E+ DH++GD +C+ CGLVL ++D SEWR F+N+ + DP RVG
Sbjct: 33 CKDCRDDPPELYEDHASGDLMCANCGLVLAQRTIDMGSEWRTFSNDDQGNDDPSRVGEGP 92
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
N LL+G L T IA S EL + ++ ++ L+QA+K I A+ D L
Sbjct: 93 NTLLNGAQLETGIAFGDGIRSREL---HRAQNKSNMDKTNKGLLQAYKQIGALCDGWQLP 149
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+++ D A +YK ++ + RG++QEA++A C+++ACR+ N PR+ +E + +KKE
Sbjct: 150 SSVSDTAKHLYKDADESRLFRGKSQEALIAGCVFLACRRNNVPRSFREVMELTK-VSKKE 208
Query: 184 IGRA----KEFIVKHLE-AEMGQSVEMG-------------TIHASDYLRRFCSNLGMTN 225
IGR ++F +K+ + A+ G S G + ++ RFC+ LGM+
Sbjct: 209 IGRTFKLLEQFYMKNTKLAKNGVSTVAGGQLVSNEAYTGSQNSNPAELCDRFCNALGMSR 268
Query: 226 QA 227
A
Sbjct: 269 TA 270
>gi|453083300|gb|EMF11346.1| cyclin-like protein [Mycosphaerella populorum SO2202]
Length = 358
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 128/239 (53%), Gaps = 19/239 (7%)
Query: 9 CKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS-DHDPVRVGGPLNPLL 67
C+ ++ DH++GD +C CGLVL+ S+D +SEWR F+N+ + DP RVG N LL
Sbjct: 37 CEDPPDLREDHASGDLLCGSCGLVLQERSIDTSSEWRTFSNDDQGNDDPSRVGDGPNALL 96
Query: 68 SGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
+G L+T IA G + L + K A +++L+QA+K I A+ D L +T+
Sbjct: 97 NGAQLNTNIAFGDGGMKAKDLHRAQNK--ANLDKGNKSLLQAYKQIGALCDGWQLPSTVS 154
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
D A +YK E+ + +G+ Q+A++A C+++ACR+ PR+ +E + TKKEIG+
Sbjct: 155 DTAKHLYKDAEESRIFKGKGQDALIAGCVFLACRRNGVPRSFREVMDLTK-VTKKEIGKT 213
Query: 188 ----KEFIVKHLEAEMGQSVEMG-----------TIHASDYLRRFCSNLGMTNQAVKAA 231
++FI + + + + T +D +R+CS L M ++ A
Sbjct: 214 YKMLEDFIRQRDKQKSASKTAVAPDVYNNAYTTTTADPADLCQRYCSMLDMDQRSTNVA 272
>gi|358400578|gb|EHK49904.1| hypothetical protein TRIATDRAFT_297298 [Trichoderma atroviride IMI
206040]
Length = 348
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 125/235 (53%), Gaps = 18/235 (7%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANE-SSDHDPVRVGGPL 63
C DCK ++ + S+GD +C CG+V+ +D SEWR FAN+ DP RVGGP
Sbjct: 24 CPDCKEYPPNLIEEFSSGDMVCQSCGVVVGTRIIDTRSEWRTFANDDQGGDDPSRVGGPQ 83
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
+ + G L+T +A + L S + A + L+QA+K I A+ + + +
Sbjct: 84 DEFVEGQHLATTVAFSESKAHKAL---SRTQNNANQDKAQKGLMQAYKEIVALCETIHMG 140
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+ + A I+K V+ K ++G+ QEA++A C++IACRQ N PRT +E ++ + +KKE
Sbjct: 141 ANVSNAAKHIFKLVDKHKFMKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTS-VSKKE 199
Query: 184 IGRA----KEFI--VKHLEAEMGQSV------EMGTIHASDYLRRFCSNLGMTNQ 226
+GR + F+ ++ E E G + E ++ A D R+ S LG NQ
Sbjct: 200 VGRVFKQLQNFLQKIQDNEGESGSGLNTVTNYENTSVGAEDLCGRYVSQLGFKNQ 254
>gi|302922832|ref|XP_003053548.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256734489|gb|EEU47835.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 347
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 123/234 (52%), Gaps = 17/234 (7%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANE-SSDHDPVRVGGPL 63
C DC+ + ++ + S+GD +C CG+V+ +D SEWR FAN+ DP RVGGP
Sbjct: 24 CPDCREIPPNLIEEFSSGDVVCESCGVVVGTRIIDTRSEWRTFANDDQGGDDPSRVGGPQ 83
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
+ + G L+T +A + L S + + L+QA+K I ++ + + +
Sbjct: 84 DEFVEGQQLATTVAFSESKAHKAL---SRTQNNTNQDKAQKGLMQAYKEIVSLCEAINMG 140
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+ + A I+K V+ K L+G+ QEA++A C++IACRQ N PRT +E ++ + +KKE
Sbjct: 141 QNVSNAAKHIFKLVDKHKFLKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTS-VSKKE 199
Query: 184 IGRAKEFIVKHLEAEMGQ-----------SVEMGTIHASDYLRRFCSNLGMTNQ 226
+GR + + L+ GQ + E ++ A D R+ S LG NQ
Sbjct: 200 VGRVFKQLQSFLQKLQGQDGEATGLNAVTNYENTSVGAEDLCGRYVSQLGFKNQ 253
>gi|374723591|gb|EHR75671.1| transcription initiation factor TFIIB [uncultured marine group II
euryarchaeote]
Length = 308
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 132/248 (53%), Gaps = 19/248 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DC + + D + G+ +C +CGLVLE +D+ +EWR+F+ E D R G P+
Sbjct: 12 CGDCGSRS-LTRDETRGEVVCEDCGLVLEDNVIDQGAEWRVFSPEQGDQ-RARTGAPMTV 69
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARS---SHPDRNLIQAFKSISA 115
+L GLST I S + ++ + K Q RS + +RNL A +
Sbjct: 70 MLHDKGLSTDIDWQNKDYSGKTINSRYRSQFYRMRKWQKRSRVSNATERNLAMALAELDR 129
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ RL L ++++ A YKK D++ +RGR+ E + AA LY ACRQ PRT+ E
Sbjct: 130 MASRLELPKSVREAAAVNYKKAVDKRLIRGRSIEGVAAASLYAACRQCGVPRTLDEIGQ- 188
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
A+ T +KEIGR F+V+ L+ ++ M T DY+ RFCS LG+ + A E +
Sbjct: 189 ASRTGRKEIGRTYRFMVRELKMKI-----MPT-GPEDYISRFCSGLGLDAEVEAKAYELI 242
Query: 236 QKSEDLDI 243
+ +++ ++
Sbjct: 243 KAAQEKEL 250
>gi|327401743|ref|YP_004342582.1| transcription initiation factor IIB [Archaeoglobus veneficus SNP6]
gi|327317251|gb|AEA47867.1| Transcription initiation factor IIB [Archaeoglobus veneficus SNP6]
Length = 329
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 132/248 (53%), Gaps = 19/248 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D+ G+ IC +CGLV+E +D EWR F +E + RVG P+
Sbjct: 33 CPECGS-PRLIRDYRRGEFICQDCGLVIEETYIDAGPEWRAFDSEQKEKRS-RVGAPVTY 90
Query: 66 LLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSISA 115
+ GLST+I K G + + + + L K Q R S+ +RNL A +
Sbjct: 91 TIHDKGLSTIIDWSNKDYYGKAISVRNRAQLFRLRKWQRRIRISNATERNLAFALSELDR 150
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL ++++ A IY+K D+ +RGR+ E +VAA LY ACRQ PRT+ E +
Sbjct: 151 MASALGLPKSVRETAAVIYRKAVDKNLIRGRSIEGVVAAALYAACRQAGVPRTLDEIATY 210
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR FI + L +++ +DY+ RFC+ LG++ K A E +
Sbjct: 211 SR-VDRKEIGRTYRFIAREL------GLKLMPTSPADYVPRFCAALGLSGDVQKKAIEII 263
Query: 236 QKSEDLDI 243
+K+E+ ++
Sbjct: 264 KKAEEKEL 271
>gi|295671166|ref|XP_002796130.1| transcription initiation factor IIB [Paracoccidioides sp. 'lutzii'
Pb01]
gi|225681734|gb|EEH20018.1| transcription initiation factor IIB [Paracoccidioides brasiliensis
Pb03]
gi|226284263|gb|EEH39829.1| transcription initiation factor IIB [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226288886|gb|EEH44398.1| transcription initiation factor IIB [Paracoccidioides brasiliensis
Pb18]
Length = 352
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 124/245 (50%), Gaps = 23/245 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +C+ + + +TIC CGLVL +D+ SEWR F+N+ ++D P RVG +N
Sbjct: 26 CPECRETPPNLVTPDSHETICGTCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAVN 85
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T I+ G + L + K+ + ++ + L+ A+K I A+ D +
Sbjct: 86 PLLNGNQLETQISYGVGGSRSRDLHRAQNKMSSEKTN--KTLLAAYKEIGALCDGFNIPK 143
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACRQ PRT E +V TKKEI
Sbjct: 144 NVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTR-VTKKEI 202
Query: 185 GR-----AKEFIVKHLEAEMGQSVEMGTI-------------HASDYLRRFCSNLGMTNQ 226
GR K F ++LE + V G + SD RFC+ L + Q
Sbjct: 203 GRIYKALEKFFTAQNLE-RINSVVSSGGVPDPNETYTATTSTKPSDLCNRFCNLLDLPFQ 261
Query: 227 AVKAA 231
+
Sbjct: 262 VTNVS 266
>gi|361129570|gb|EHL01473.1| putative Transcription initiation factor IIB [Glarea lozoyensis
74030]
Length = 342
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 113/198 (57%), Gaps = 9/198 (4%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES-SDHDPVRVGGPL 63
C DCK +V + S+GD +C+ CGLVL VD SEWR FAN+ + DP RVG
Sbjct: 25 CKDCKEYPPNLVEEFSSGDMVCASCGLVLGERVVDSRSEWRTFANDDQGNDDPSRVGDGP 84
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
N LL+G L T IA + L + GK S ++L+ A+K I A D + +
Sbjct: 85 NVLLNGSQLQTTIAYGDGNARSRDLLRAQGKTGNDKST--KSLLAAYKEIGAHCDAVNIP 142
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+ D A ++K+V+D K +G++Q+AI+A C++IACRQ N PRT +E ++ +KK+
Sbjct: 143 KNVSDTAKYLFKQVDDGKAFKGKSQDAIIAGCIFIACRQCNVPRTFREIFALTK-VSKKD 201
Query: 184 IGRAKEFIVKHLEAEMGQ 201
IGR + K LEA G+
Sbjct: 202 IGR----VFKSLEAFFGK 215
>gi|322699177|gb|EFY90941.1| transcription initiation protein [Metarhizium acridum CQMa 102]
Length = 347
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 136/254 (53%), Gaps = 24/254 (9%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH---DPVRVGG 61
C DCK + +V + S+GD +C CG+V+ +D SEWR FAN+ DH DP RVGG
Sbjct: 23 CPDCKEIPPNLVEEFSSGDMVCQSCGVVVGTRIIDTRSEWRTFAND--DHGGDDPSRVGG 80
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLG 121
P + + G L+T +A + L S + A + L+QA+K I ++ + +
Sbjct: 81 PQDEFVEGEQLATTVAFSESKAHKAL---SRTQNNASQDKAQKGLMQAYKEIVSLCEAIN 137
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
+ + + A I+K V+ K ++G+ QEA++A C++IACRQ N PRT +E ++ + +K
Sbjct: 138 MGQNVSNAAKHIFKLVDKHKFMKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTS-VSK 196
Query: 182 KEIGRA----KEFIVKHLEAEMGQSVEMGT--------IHASDYLRRFCSNLGMTNQA-- 227
KE+GR ++F+ K + E + + T + A D R+ S LG +Q
Sbjct: 197 KEVGRVFKQLQKFLQKLQDTEGEGATGLNTVTNYENTSVGAEDLCSRYVSQLGFKSQQKI 256
Query: 228 VKAAQEAVQKSEDL 241
K +++ +K+ D+
Sbjct: 257 SKISRDLAEKANDI 270
Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT---VKEFCSVANGTTK---KEIG 185
++ +K D L GR+ ++ AAC+Y+AC +PR+ + + V++GT K K +
Sbjct: 262 DLAEKANDISALAGRSPLSVAAACIYMACHLVGEPRSSLPIAKQAGVSDGTVKTAYKHLF 321
Query: 186 RAKEFIVKHLEAEMGQSVE 204
A+E ++K E G S++
Sbjct: 322 AAREQLIKKEWLEDGGSMD 340
>gi|342879738|gb|EGU80975.1| hypothetical protein FOXB_08534 [Fusarium oxysporum Fo5176]
Length = 345
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 127/235 (54%), Gaps = 19/235 (8%)
Query: 6 CADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANE-SSDHDPVRVGGPL 63
C +C +V + S+GDT+C +CG+V+ + +D SEWR FAN+ DP RVGGP
Sbjct: 21 CPECNISPPHLVEEFSSGDTVCEDCGMVVGSRIIDTRSEWRTFANDDQGGDDPSRVGGPQ 80
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
+ + G L+T +A L Q +S + L+QA+K I + + + +
Sbjct: 81 DEFVEGQQLATTVAFSETKAHKALSRTQNNTNQDKS---QKGLMQAYKEIVSYCEAINMG 137
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
T + + A I+K V+ K L+G+ QEA++A C++IACRQ N PRT +E ++ + +KKE
Sbjct: 138 TNVSNAAKHIFKLVDKHKFLKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTS-VSKKE 196
Query: 184 IGRA----KEFIVKHLEAEMGQSVEMGTIH--------ASDYLRRFCSNLGMTNQ 226
+GR + F+ K L+ + G++ + T+ A D R+ S LG T Q
Sbjct: 197 VGRVFKQLQSFLQK-LQDQDGEATGLNTVTNYENTSVGAEDLCGRYVSQLGFTKQ 250
>gi|357116817|ref|XP_003560173.1| PREDICTED: transcription initiation factor IIB-like [Brachypodium
distachyon]
Length = 331
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 137/273 (50%), Gaps = 39/273 (14%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
YC C+R+T V D T+C+EC LVL VDE+ EWR F N + + ++
Sbjct: 10 YCKGCRRVTAVTVD-----TVCTECSLVLNERYVDESLEWRTFLNHGTPAEAEDSSSRVD 64
Query: 65 P-LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQA-------------- 109
L+ L T ++ P A G+ ++ + +L +++ +
Sbjct: 65 DHFLTNLQLGTGVSGPAASGNAQMKT-ALPRMRGAGAGGSGVATAKTRGAAAAASDRALA 123
Query: 110 --FKSISAMSDRLGLVTTIKDRANEIYKKVEDQK--PLRG--RNQEAIVAACLYIACRQE 163
F ++ M+++LGL T +KDRA E+ +K+E K P G RN+ A+ AACL++ACR E
Sbjct: 124 DAFHAMDGMAEQLGLATAVKDRAKEVLRKLEVAKAFPKGGKCRNRRALYAACLHMACRDE 183
Query: 164 NKPRTVKEFCSVANGTT---KKEIGRAKEFIVKHL-------EAEMGQSVEMGTI-HASD 212
PRT KE SV + K+IGR + I HL E ++E G I A D
Sbjct: 184 GTPRTFKELASVTGDSVTAGTKDIGRLVKHIKNHLGDQDQDAEGMQATALEKGAIVRAGD 243
Query: 213 YLRRFCSNLGMTNQAVKAAQEAVQKSE-DLDIR 244
YL RF LGM + + AAQEA ++ E DLD+R
Sbjct: 244 YLCRFGLQLGMGQEELHAAQEAARRLEKDLDVR 276
>gi|340521242|gb|EGR51477.1| transcription factor [Trichoderma reesei QM6a]
Length = 363
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 125/235 (53%), Gaps = 18/235 (7%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANE-SSDHDPVRVGGPL 63
C DCK +++ + S+GD +C+ CG+V+ +D SEWR FAN+ DP RVGGP
Sbjct: 38 CPDCKEYPPDLIEEFSSGDMVCNSCGVVVGTRIIDTRSEWRTFANDDQGGDDPSRVGGPQ 97
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
+ + G L+T +A + L S + A + L+QA+K I A+ + + +
Sbjct: 98 DEFVEGQHLATTVAFSESKAHKAL---SRTQNNANQDKAQKGLMQAYKEIVALCETIHMG 154
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+ + A I+K V+ K ++G+ QEA++A C++IACRQ N PRT +E ++ + +KKE
Sbjct: 155 ANVSNAAKHIFKLVDKHKFMKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTS-VSKKE 213
Query: 184 IGRA----KEFIVKHLEAEMGQSVEMGTIH--------ASDYLRRFCSNLGMTNQ 226
+GR + F+ K + E + + T+ A D R+ S LG NQ
Sbjct: 214 VGRVFKQLQNFLQKIQDTEGEGATGLNTVTNYENTSVGAEDLCGRYVSQLGFKNQ 268
>gi|358379756|gb|EHK17435.1| hypothetical protein TRIVIDRAFT_182873 [Trichoderma virens Gv29-8]
Length = 356
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 123/235 (52%), Gaps = 18/235 (7%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANE-SSDHDPVRVGGPL 63
C DCK ++ + S+GD +C CG+V+ +D SEWR FAN+ DP RVGGP
Sbjct: 32 CPDCKEYPPNLIEEFSSGDMVCQSCGVVVGTRIIDTRSEWRTFANDDQGGDDPSRVGGPQ 91
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
+ + G L+T +A + L S + A + + L+QA+K I A+ + + +
Sbjct: 92 DEFVEGQHLATTVAFSESKAHKAL---SRTQNNANADKAQKGLMQAYKEIVALCETINMG 148
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+ + A I+K V+ K ++G+ QEA++A C++IACRQ N PRT +E ++ + +KKE
Sbjct: 149 ANVSNAAKHIFKLVDKHKFMKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTS-VSKKE 207
Query: 184 IGRA--------KEFIVKHLEAEMG----QSVEMGTIHASDYLRRFCSNLGMTNQ 226
+GR ++ V E G + E ++ A D R+ S LG NQ
Sbjct: 208 VGRVFKQLQNFLQKIQVTEGEGATGLNTVTNYENTSVGAEDLCGRYVSQLGFKNQ 262
>gi|48478410|ref|YP_024116.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
gi|48431058|gb|AAT43923.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
Length = 310
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 132/248 (53%), Gaps = 19/248 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +++V D+ G+ ICS CGLV++ +DE EWR F +E ++ R G P+
Sbjct: 14 CPECGS-SQLVRDYERGELICSNCGLVIDDSYIDEGPEWRAFDSEQNESR-ARTGSPMTY 71
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSISA 115
+ GLST I+ K + G S + + L K Q R S+ +RNL QA + +
Sbjct: 72 TIHDKGLSTDISWKNKDSYGKSIPTRNRAQLYRLRKWQKRIKVSNAAERNLSQALQELER 131
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ L + +++ A IY+K Q +RGR+ E +VA +Y ACR N PRT+ E SV
Sbjct: 132 MTSNLSIPNDVRETAAVIYRKAVKQNMIRGRSIEGVVAGSIYAACRITNVPRTLDEIASV 191
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
KKEIGR + ++L+ + S DY+ RFCS L ++ +A K A+E +
Sbjct: 192 TR-VKKKEIGRTYRIMARYLKLNIMPS------KPEDYVNRFCSKLRLSMEARKRAEEIL 244
Query: 236 QKSEDLDI 243
+ + D D+
Sbjct: 245 KMAVDNDL 252
>gi|170091576|ref|XP_001877010.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648503|gb|EDR12746.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 349
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 126/230 (54%), Gaps = 21/230 (9%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C +C+ +V +GD +C CGLVL VD SEWR FAN+ D DP RVG +
Sbjct: 32 CPECRDPNPNIVEQFGSGDLVCGNCGLVLGDRIVDTRSEWRTFANDEGD-DPSRVGAASD 90
Query: 65 PLLSG-GGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
PL+ G L TVI+ G ++ L + +RS S +RN++ AF+ I + D+
Sbjct: 91 PLMEGMEQLDTVISFRDGGSG---IARELQRAASRSQNSRSERNIMTAFRDIGSWCDQFS 147
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L TI D A ++YK+ +++K LRG+ EA++AAC++IACRQ + PRT +E C + + +K
Sbjct: 148 LPKTISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFREICDLTH-VSK 206
Query: 182 KEIGRAKEFIVKHLEAEMGQSVEMGTIHAS--------DYLRRFCSNLGM 223
K +G+ K LE + HAS + L R+C++L +
Sbjct: 207 KILGQC----YKALEQAFNLTPGASAAHASNNPATGPENLLVRYCNHLDL 252
>gi|408396047|gb|EKJ75215.1| hypothetical protein FPSE_04606 [Fusarium pseudograminearum CS3096]
Length = 349
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 135/252 (53%), Gaps = 21/252 (8%)
Query: 6 CADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +C +V + S+GDT+CS+CGLV+ + +D SEWR FAN+ DP RVGGP
Sbjct: 22 CPECNINPPNLVDEWSSGDTVCSDCGLVVGSRIIDTRSEWRTFANDDQGGDDPSRVGGPQ 81
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
+ + G L+T +A L Q ++ + L+ A+K I ++ + + +
Sbjct: 82 DEFVEGQQLATTVAFSDLKAHKALSRTQNNTTQDKAQ---KGLMLAYKEIVSLCEAINMG 138
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+ + A I+K V+ K L+G+ QEA++A C++IACRQ N PRT +E ++ + +KKE
Sbjct: 139 QNVSNAAKHIFKLVDKHKFLKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTS-VSKKE 197
Query: 184 IGRA----KEFIVKHLEAEMGQSVEMGTIH--------ASDYLRRFCSNLGMTNQ--AVK 229
+GR + F+ K E E G + + T+ A D R+ S LG+ NQ K
Sbjct: 198 VGRVFKQLQSFLQKLQETE-GDATGLNTVTNYENTSVGAEDLCGRYVSQLGLLNQQKVAK 256
Query: 230 AAQEAVQKSEDL 241
+++ +++ D+
Sbjct: 257 ISRDLAEQANDI 268
>gi|46107428|ref|XP_380773.1| hypothetical protein FG00597.1 [Gibberella zeae PH-1]
Length = 348
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 135/252 (53%), Gaps = 21/252 (8%)
Query: 6 CADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +C +V + S+GDT+CS+CGLV+ + +D SEWR FAN+ DP RVGGP
Sbjct: 22 CPECNINPPNLVDEWSSGDTVCSDCGLVVGSRIIDTRSEWRTFANDDQGGDDPSRVGGPQ 81
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
+ + G L+T +A L Q ++ + L+ A+K I ++ + + +
Sbjct: 82 DEFVEGQQLATTVAFSDLKAHKALSRTQNNTTQDKAQ---KGLMLAYKEIVSLCEAINMG 138
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+ + A I+K V+ K L+G+ QEA++A C++IACRQ N PRT +E ++ + +KKE
Sbjct: 139 QNVSNAAKHIFKLVDKHKFLKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTS-VSKKE 197
Query: 184 IGRA----KEFIVKHLEAEMGQSVEMGTIH--------ASDYLRRFCSNLGMTNQ--AVK 229
+GR + F+ K E E G + + T+ A D R+ S LG+ NQ K
Sbjct: 198 VGRVFKQLQSFLQKLQETE-GDATGLNTVTNYENTSVGAEDLCGRYVSQLGLLNQQKVAK 256
Query: 230 AAQEAVQKSEDL 241
+++ +++ D+
Sbjct: 257 ISRDLAEQANDI 268
>gi|240273589|gb|EER37109.1| transcription initiation protein [Ajellomyces capsulatus H143]
gi|325087490|gb|EGC40800.1| transcription initiation protein [Ajellomyces capsulatus H88]
Length = 352
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 123/245 (50%), Gaps = 23/245 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +C+ + + +TIC CGLVL +D+ SEWR F+N+ ++D P RVG N
Sbjct: 26 CPECRETPPNLVTPDSHETICGSCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAAN 85
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T I+ G + L + K+ + ++ + L+ A+K I A+ D +
Sbjct: 86 PLLNGNQLETQISYGAGGSRSRELHRAQNKMSSEKTN--KALLAAYKEIGALCDGFNIPK 143
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACRQ PRT E +V TKKEI
Sbjct: 144 NVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTR-VTKKEI 202
Query: 185 GR-----AKEFIVKHLEAEMGQSVEMGTI-------------HASDYLRRFCSNLGMTNQ 226
GR K F ++LE + V G + SD RFC+ L + Q
Sbjct: 203 GRIYKALEKFFTAQNLE-RINSVVSSGGVPDPNETYTATTSTKPSDLCNRFCNLLDLPFQ 261
Query: 227 AVKAA 231
+
Sbjct: 262 VTNVS 266
>gi|261193976|ref|XP_002623393.1| transcription initiation factor IIB [Ajellomyces dermatitidis
SLH14081]
gi|239588407|gb|EEQ71050.1| transcription initiation factor IIB [Ajellomyces dermatitidis
SLH14081]
gi|239607027|gb|EEQ84014.1| transcription initiation factor IIB [Ajellomyces dermatitidis ER-3]
gi|327354501|gb|EGE83358.1| transcription initiation factor IIB [Ajellomyces dermatitidis ATCC
18188]
Length = 352
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 136/273 (49%), Gaps = 28/273 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +C+ + + +TIC CGLVL +D+ SEWR F+N+ ++D P RVG N
Sbjct: 26 CPECRETPPNLVTPDSHETICGTCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAAN 85
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T I+ G + L + K+ + ++ + L+ A+K I A+ D +
Sbjct: 86 PLLNGNQLETQISYGAGGSRSRELHRAQNKMSSEKTN--KVLMAAYKEIGALCDGFNIPK 143
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACRQ PRT E +V TKKEI
Sbjct: 144 NVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTR-VTKKEI 202
Query: 185 GR-----AKEFIVKHLEAEMGQSVEMGTI-------------HASDYLRRFCSNLGMTNQ 226
GR K F ++LE + V G + SD RFC+ L + Q
Sbjct: 203 GRIYKALEKFFTAQNLE-RINSVVSSGGVPDPNETYTATTSTKPSDLCNRFCNLLDLPFQ 261
Query: 227 AVK---AAQEAVQKSEDLDIR--LILVFFSLFL 254
A + V + DL R L +V S+++
Sbjct: 262 VTNVSSALADRVTSTGDLAGRSPLSIVAASIYM 294
>gi|225556484|gb|EEH04772.1| transcription initiation protein [Ajellomyces capsulatus G186AR]
Length = 352
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 123/245 (50%), Gaps = 23/245 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +C+ + + +TIC CGLVL +D+ SEWR F+N+ ++D P RVG N
Sbjct: 26 CPECRETPPNLVTPDSHETICGSCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAAN 85
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T I+ G + L + K+ + ++ + L+ A+K I A+ D +
Sbjct: 86 PLLNGNQLETQISYGAGGSRSRELHRAQNKMSSEKTN--KALLAAYKEIGALCDGFNIPK 143
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACRQ PRT E +V TKKEI
Sbjct: 144 NVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTR-VTKKEI 202
Query: 185 GR-----AKEFIVKHLEAEMGQSVEMGTI-------------HASDYLRRFCSNLGMTNQ 226
GR K F ++LE + V G + SD RFC+ L + Q
Sbjct: 203 GRIYKALEKFFTAQNLE-RINSVVSSGGVPDPNETYTATTSTKPSDLCNRFCNLLDLPFQ 261
Query: 227 AVKAA 231
+
Sbjct: 262 VTNVS 266
>gi|154271255|ref|XP_001536481.1| transcription initiation factor IIB [Ajellomyces capsulatus NAm1]
gi|150409704|gb|EDN05148.1| transcription initiation factor IIB [Ajellomyces capsulatus NAm1]
Length = 352
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 123/245 (50%), Gaps = 23/245 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +C+ + + +TIC CGLVL +D+ SEWR F+N+ ++D P RVG N
Sbjct: 26 CPECRETPPNLVTPDSHETICGSCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAAN 85
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T I+ G + L + K+ + ++ + L+ A+K I A+ D +
Sbjct: 86 PLLNGNQLETQISYGAGGSRSRELHRAQNKMSSEKTN--KALLAAYKEIGALCDGFNIPK 143
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACRQ PRT E +V TKKEI
Sbjct: 144 NVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTR-VTKKEI 202
Query: 185 GR-----AKEFIVKHLEAEMGQSVEMGTI-------------HASDYLRRFCSNLGMTNQ 226
GR K F ++LE + V G + SD RFC+ L + Q
Sbjct: 203 GRIYKALEKFFTAQNLE-RINSVVSSGGVPDPNETYTATTSTKPSDLCNRFCNLLDLPFQ 261
Query: 227 AVKAA 231
+
Sbjct: 262 VTNVS 266
>gi|119187159|ref|XP_001244186.1| conserved hypothetical protein [Coccidioides immitis RS]
gi|303317234|ref|XP_003068619.1| transcription initiation factor IIB, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240108300|gb|EER26474.1| transcription initiation factor IIB, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320038548|gb|EFW20483.1| transcription initiation factor IIB [Coccidioides posadasii str.
Silveira]
gi|392870902|gb|EAS32745.2| transcription initiation factor IIB [Coccidioides immitis RS]
Length = 353
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 122/240 (50%), Gaps = 23/240 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +CK + + +TIC CGLVL +D+ SEWR F+N+ ++D P RVG N
Sbjct: 27 CPECKENPPNLRTPDSHETICGSCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAAN 86
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T I+ G T L + K+ + ++ R L+ A+K I A+ D +
Sbjct: 87 PLLNGNQLETQISYGQGGAKTRELHRAQNKMSSEKTN--RALLAAYKEIGALCDGFNIQK 144
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACRQ PRT E ++ +KKEI
Sbjct: 145 NVADTAKYLFKVVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFALTR-VSKKEI 203
Query: 185 GR-----AKEFIVKHLEAEMGQSVEMGTI-------------HASDYLRRFCSNLGMTNQ 226
GR K F ++LE + V G + SD RFC+ L + Q
Sbjct: 204 GRIYKALEKFFTAQNLE-RINSVVSSGGVPDPNETYTATTSTKPSDLCNRFCNLLDLPFQ 262
>gi|257076875|ref|ZP_05571236.1| transcription initiation factor IIB [Ferroplasma acidarmanus fer1]
Length = 311
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 132/248 (53%), Gaps = 19/248 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +++V D+ G+ +CS CGLV++ +DE EWR F +E S+ R G P+
Sbjct: 15 CPECGS-SQLVRDYERGELVCSNCGLVIDDSYIDEGPEWRAFDSEQSESR-ARTGSPMTY 72
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSISA 115
+ GLST I+ K + G S + + L K Q R S+ +RNL QA + +
Sbjct: 73 TIHDKGLSTDISWKNKDSYGKSIPTRNRAQLYRLRKWQKRIKVSNAAERNLSQALQELER 132
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ L + +++ + IY+K Q +RGR+ E +VA +Y ACR N PRT+ E SV
Sbjct: 133 MASNLSIPNDVRETSAVIYRKAVKQNMIRGRSIEGVVAGSIYAACRITNVPRTLDEIASV 192
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
KKEIGR + ++L+ + S DY+ RFCS L ++ +A K A+E +
Sbjct: 193 TR-VKKKEIGRTYRIMARYLKLNILPS------KPDDYVNRFCSKLRLSMEARKRAEEIL 245
Query: 236 QKSEDLDI 243
+ + D D+
Sbjct: 246 KMAIDNDL 253
>gi|288931755|ref|YP_003435815.1| transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
gi|288894003|gb|ADC65540.1| Transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
Length = 328
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 132/248 (53%), Gaps = 19/248 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D G+ IC +CGLV+E +D EWR F +E + RVG P+
Sbjct: 32 CPECGS-PRLIRDFKRGEFICQDCGLVIEDTYIDSGPEWRAFDSEQREKRS-RVGAPITY 89
Query: 66 LLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSISA 115
+ GLST+I K G + + + + L K Q R S+ +RNL A +
Sbjct: 90 TIHDKGLSTIIDWSNKDYYGKAISVRNRAQLFRLRKWQRRIRISNATERNLAFALSELDR 149
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL ++++ A IY+K ++ +RGR+ E +VAA LY ACRQ PRT+ E +
Sbjct: 150 MASALGLPKSVRETAAVIYRKAVEKNLIRGRSIEGVVAAALYAACRQAGVPRTLDEIATY 209
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR FI + L +++ +DY+ RFC+ LG++ + K A E +
Sbjct: 210 SR-VDRKEIGRTYRFIAREL------GLKLLPTSPADYVPRFCAALGLSGEVQKKAIEII 262
Query: 236 QKSEDLDI 243
+K+E+ ++
Sbjct: 263 KKAEEKEL 270
>gi|258563760|ref|XP_002582625.1| transcription initiation factor IIB [Uncinocarpus reesii 1704]
gi|237908132|gb|EEP82533.1| transcription initiation factor IIB [Uncinocarpus reesii 1704]
Length = 353
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 121/239 (50%), Gaps = 21/239 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +CK + + +TIC CGLVL +D+ SEWR F+N+ ++D P RVG N
Sbjct: 27 CPECKENPPNLRTPDSHETICGSCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAAN 86
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T I+ G T L + K+ + + +R L+ A+K I A+ D +
Sbjct: 87 PLLNGNQLETQISYGQGGAKTRELHRAQNKMSSEKT--NRALLAAYKEIGALCDGFNIQK 144
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACRQ PRT E ++ +KKEI
Sbjct: 145 NVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFALTR-VSKKEI 203
Query: 185 GRAKEFIVKHLEAE----MGQSVEMGTI-------------HASDYLRRFCSNLGMTNQ 226
GR + + K A+ + V G + SD RFC+ L + Q
Sbjct: 204 GRIYKTLEKFFTAQNMERINSVVSSGGVPDPNETYTATTSTKPSDLCSRFCNLLDLPFQ 262
>gi|346322890|gb|EGX92488.1| transcription initiation protein [Cordyceps militaris CM01]
Length = 347
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 135/252 (53%), Gaps = 21/252 (8%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C DC+ + +V + S+GD +C CG+V+ +D SEWR FAN+ + DP RVGGP
Sbjct: 24 CPDCREIPPNLVEEFSSGDMVCQSCGVVVGTRIIDTRSEWRTFANDDQNGDDPSRVGGPQ 83
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
+ + G L+T +A + LL Q + R L+QA+K I ++ + + +
Sbjct: 84 DEFVEGQQLATSVAFSESRQHKNLLRVQNNTNQDKQQ---RGLMQAYKEIVSLCEAINMG 140
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+ + A I+K V+ K ++G+ QEA++A C++IACRQ N PRT +E ++ + +KKE
Sbjct: 141 QNVSNAAKHIFKLVDKYKFMKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTS-VSKKE 199
Query: 184 IGRA----KEFIVKHLEAEMGQSVEMGTIH--------ASDYLRRFCSNLGMTNQA--VK 229
+GR + F+ K + E G++ + T+ A D R+ S +G Q K
Sbjct: 200 VGRVFKQLQNFLQKLQDTE-GEATGLNTVTNYENTSVGAEDLCSRYVSQIGFKAQQKISK 258
Query: 230 AAQEAVQKSEDL 241
++E +++ D+
Sbjct: 259 ISRELAEQANDI 270
>gi|328858041|gb|EGG07155.1| hypothetical protein MELLADRAFT_43314 [Melampsora larici-populina
98AG31]
Length = 345
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 123/229 (53%), Gaps = 17/229 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DC R ++V + S+GD +C CGLV+ VD SEWR FA + D DP RVGGP NP
Sbjct: 29 CPDC-RTYKLVEEFSSGDLVCGTCGLVIGDRIVDTRSEWRTFAGDEGD-DPSRVGGPSNP 86
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTT 125
LL+G I G + + +A + ++++ AF SI M D + L T
Sbjct: 87 LLNGVETFETIISFKDGNTGVARDLNRAATRAATKSGEKSVAAAFLSIQDMCDTISLPRT 146
Query: 126 IKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIG 185
+ D A +++++ +++K LRG+ +A++AAC++IACRQ R+ KE ++ KK+IG
Sbjct: 147 VTDIAKQLFRRADEEKLLRGKQIDAVIAACIFIACRQSKVGRSFKEVVALTR-VPKKQIG 205
Query: 186 RAKEFIVKHLE-----------AEMGQSVEMGTIHASDYLRRFCSNLGM 223
+ + + E + G+S G A D + RFCS+LG+
Sbjct: 206 QCFKALSAAFETSAVGGGGALNTDTGESSGAG---AEDLMARFCSHLGL 251
>gi|255721725|ref|XP_002545797.1| transcription initiation factor IIB [Candida tropicalis MYA-3404]
gi|240136286|gb|EER35839.1| transcription initiation factor IIB [Candida tropicalis MYA-3404]
Length = 347
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 135/254 (53%), Gaps = 20/254 (7%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C DCK +++ S GD IC +CGLVL VD SEWR F N+ + DP RVG
Sbjct: 23 CPDCKLFPPDLIERFSEGDIICGQCGLVLSDRIVDTRSEWRTFQNDDKNSDDPSRVGEAS 82
Query: 64 NPLLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQARSSHPDRN--LIQAFKSISAMSD 118
N L L+T+I A P GS +L K+Q +S +N L A++ IS + +
Sbjct: 83 NSLYDTEDLTTMISYTANPGGSGS----KNNLNKIQQKSLVDKKNYALQAAYQRISELCN 138
Query: 119 RLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG 178
L ++ D A +YK V D + L+G++Q+AI+A+ + + CR+ PRT++E ++ N
Sbjct: 139 GYQLPKSVSDAAKHLYKAVRDDRLLKGKSQDAIMASTILLGCRRAEVPRTLEEIRALTNV 198
Query: 179 TTKK--EIGR-AKEFIVKHLEAE------MGQSVEMGTIHASDYLRRFCSNLGMTNQAVK 229
TK+ +I R K+ I HL ++ + ++ + T A D +RRFCS+LG+
Sbjct: 199 PTKQIAKITRLIKKIIHSHLNSDDAAAAIVDETTNLTTHSAEDLIRRFCSHLGLNPIITN 258
Query: 230 AAQEAVQKSEDLDI 243
++ +K +L I
Sbjct: 259 GSEYIARKCNELGI 272
>gi|291333316|gb|ADD93023.1| transcription initiation factor IIB [uncultured archaeon
MedDCM-OCT-S04-C246]
Length = 308
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 129/248 (52%), Gaps = 19/248 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D + G+ IC +CGLVLE +D+ +EWR+F+ E D R G P+
Sbjct: 12 CTECASRN-LVKDENRGELICQDCGLVLEDNVIDQGAEWRVFSPEQGDQR-ARTGAPMTV 69
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARS---SHPDRNLIQAFKSISA 115
+L GLST I S + +S + K Q RS + +RNL A +
Sbjct: 70 MLHDKGLSTDIDWQNKDYSGKSISSRYRSQFYRMRKWQKRSRVSNATERNLAMALAELDR 129
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ RL L +I++ A YKK + + +RGR+ E + AA LY ACRQ + PRT+ E
Sbjct: 130 MASRLDLPKSIREAAAVNYKKAVEARLIRGRSIEGVAAASLYAACRQCSNPRTLDEIGE- 188
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
A+ T +KEIGR F+V+ L+ +++ DY+ RFCS L + + A E +
Sbjct: 189 ASRTGRKEIGRTYRFMVRELK------MKIPPTKPEDYIPRFCSGLDLDAEVQAKAYELI 242
Query: 236 QKSEDLDI 243
+++ ++
Sbjct: 243 AAAQEREL 250
>gi|425768808|gb|EKV07320.1| Transcription initiation protein [Penicillium digitatum Pd1]
gi|425770141|gb|EKV08614.1| Transcription initiation protein [Penicillium digitatum PHI26]
Length = 350
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 123/242 (50%), Gaps = 28/242 (11%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +CK + + +T+C CGLVL +D SEWR F+N+ ++D P RVG N
Sbjct: 25 CPECKEDPPNLEFPDSHETVCGSCGLVLADREIDLHSEWRTFSNDDQNNDDPSRVGDASN 84
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRN--LIQAFKSISAMSDRLGL 122
PLL+G L T IA +G + +L + Q + S N L+ A+K I A+ D +
Sbjct: 85 PLLNGAQLETSIASGGSGRARDLY-----RAQNKQSGEKANKALLAAYKEIGALCDGFNI 139
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
T+ D A ++K V+D K +G++QE I+A C++IACRQ PRT E +V T+K
Sbjct: 140 QKTVADTAKYLFKMVDDAKAFKGKSQEVIIAGCIFIACRQCKVPRTFTEIFAVTK-VTRK 198
Query: 183 EIGR-----AKEFIVKHLEAEMGQSVEMGTIH-------------ASDYLRRFCSNLGMT 224
EIGR K F +++E ++E G H SD RFC+ L +
Sbjct: 199 EIGRIYKALEKFFTTQNVE-RHNAALENGETHDFAGDYNATTSTKPSDLCNRFCNLLDLP 257
Query: 225 NQ 226
Q
Sbjct: 258 YQ 259
>gi|255942455|ref|XP_002561996.1| Pc18g01520 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586729|emb|CAP94376.1| Pc18g01520 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 350
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 123/242 (50%), Gaps = 28/242 (11%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +CK + + +T+C CGLVL +D SEWR F+N+ ++D P RVG N
Sbjct: 25 CPECKEDPPNLEFPDSHETVCGSCGLVLADREIDLHSEWRTFSNDDQNNDDPSRVGDASN 84
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRN--LIQAFKSISAMSDRLGL 122
PLL+G L T IA +G + +L + Q + S N L+ A+K I A+ D +
Sbjct: 85 PLLNGAQLETSIASGGSGRARDLY-----RAQNKQSGEKANKALLAAYKEIGALCDGFNI 139
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
T+ D A ++K V+D K +G++QE I+A C++IACRQ PRT E +V T+K
Sbjct: 140 QKTVADTAKYLFKMVDDAKAFKGKSQEVIIAGCIFIACRQCKVPRTFTEIFAVTK-VTRK 198
Query: 183 EIGR-----AKEFIVKHLEAEMGQSVEMGTIH-------------ASDYLRRFCSNLGMT 224
EIGR K F +++E ++E G H SD RFC+ L +
Sbjct: 199 EIGRIYKALEKFFTTQNVE-RHNAALENGETHDFAGDYNATTSTKPSDLCNRFCNLLDLP 257
Query: 225 NQ 226
Q
Sbjct: 258 YQ 259
>gi|284161172|ref|YP_003399795.1| transcription factor TFIIB cyclin-related protein [Archaeoglobus
profundus DSM 5631]
gi|284011169|gb|ADB57122.1| Transcription factor TFIIB cyclin-related protein [Archaeoglobus
profundus DSM 5631]
Length = 329
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 131/248 (52%), Gaps = 19/248 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D+ G+ IC +CG V+E +D EWR F +E + RVG P+
Sbjct: 33 CPECGS-PRIVRDYKRGELICQDCGYVIEERYIDAGPEWRAFDSEQREKRS-RVGAPITY 90
Query: 66 LLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSISA 115
+ GL+T+I K G + + + + L K Q R S+ +RNL A +
Sbjct: 91 TIHDKGLTTIIDWNNKDYYGKAISVRTRAQLFRLRKWQRRIRISNATERNLAFALSELDR 150
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL ++++ A IY+K ++ +RGR+ E +VAA LY ACRQ PRT+ E
Sbjct: 151 MASALGLPKSVRETAAVIYRKAIEKNLIRGRSIEGVVAAALYAACRQAGVPRTLDEIAQY 210
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR FI + L +++ +DY+ RFC+ LG++ + + A E +
Sbjct: 211 SR-VDRKEIGRTYRFIAREL------GLKLMPTSPADYVPRFCAALGLSGEVQRKAIEII 263
Query: 236 QKSEDLDI 243
+K+E+ ++
Sbjct: 264 KKAEEREL 271
>gi|145232671|ref|XP_001399760.1| transcription initiation factor IIB [Aspergillus niger CBS 513.88]
gi|134056679|emb|CAK37672.1| unnamed protein product [Aspergillus niger]
gi|358365509|dbj|GAA82131.1| transcription initiation protein [Aspergillus kawachii IFO 4308]
Length = 351
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 123/240 (51%), Gaps = 24/240 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +CK + + + +T+C CGLVL +D SEWR F+N+ ++D P RVG +N
Sbjct: 26 CPECKEVPPNLEFPGSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDAMN 85
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T IA +GGS + + + S ++ L+ A+K I A+ D +
Sbjct: 86 PLLNGDQLETQIA---SGGSGRVRDLYRAQNKQSSEKANKALLAAYKEIGALCDGFNIQK 142
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACRQ PRT E +V T+KEI
Sbjct: 143 NVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTK-VTRKEI 201
Query: 185 GR-----AKEFIVKHLEAEMGQSVEMGTI-------------HASDYLRRFCSNLGMTNQ 226
GR K F ++LE + V G + SD RFC+ L + Q
Sbjct: 202 GRIYKALEKFFTAQNLE-RINAVVSSGGVPDPNDTYTATTSTKPSDLCNRFCNLLDLPFQ 260
>gi|350634612|gb|EHA22974.1| hypothetical protein ASPNIDRAFT_206867 [Aspergillus niger ATCC
1015]
Length = 351
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 123/240 (51%), Gaps = 24/240 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +CK + + + +T+C CGLVL +D SEWR F+N+ ++D P RVG +N
Sbjct: 26 CPECKEVPPNLEFPGSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDAMN 85
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T IA +GGS + + + S ++ L+ A+K I A+ D +
Sbjct: 86 PLLNGDQLETQIA---SGGSGRVRDLYRAQNKQSSEKANKALLAAYKEIGALCDGFNIQK 142
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACRQ PRT E +V T+KEI
Sbjct: 143 NVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTK-VTRKEI 201
Query: 185 GR-----AKEFIVKHLEAEMGQSVEMGTI-------------HASDYLRRFCSNLGMTNQ 226
GR K F ++LE + V G + SD RFC+ L + Q
Sbjct: 202 GRIYKALEKFFTAQNLE-RINAVVSSGGVPDPNDTYTATTSTKPSDLCNRFCNLLDLPFQ 260
>gi|347975957|ref|XP_003437308.1| unnamed protein product [Podospora anserina S mat+]
gi|170940166|emb|CAP65393.1| unnamed protein product [Podospora anserina S mat+]
Length = 348
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 123/236 (52%), Gaps = 23/236 (9%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS-DHDPVRVGGPL 63
CA+CK ++ + S+GD +C CGLVL +D SEWR F+N+ + DP RVG
Sbjct: 26 CAECKEFPPNLIEEFSSGDMVCESCGLVLGERIIDTRSEWRTFSNDDQGNDDPSRVGDGP 85
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHP--DRNLIQAFKSISAMSDRLG 121
N ++ G L T IA G +L LQ + ++ + L+ A++ I + +D +
Sbjct: 86 NLMIDGDQLQTTIAFDGKGAK------NLSHLQNKMTNDKGSKQLLNAYRDIQSFTDSIN 139
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
T + + A IYK V+D K L+G++QEAI+A C++IACRQ N RT +E + +K
Sbjct: 140 TGTQVANAAKHIYKLVDDAKALKGKSQEAIIAGCIFIACRQANADRTFREIYRLTK-VSK 198
Query: 182 KEIGRAKEFIVKHLEAEMGQS--VEMGTIHASDYLR----------RFCSNLGMTN 225
KEIGR + + L+ G + G + + + R+CSN+G N
Sbjct: 199 KEIGRVFKQLETFLQKAGGADDITKAGPFNQTYQAKASTTAVGLCARYCSNMGFRN 254
>gi|269862647|ref|XP_002650920.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
gi|220065412|gb|EED43136.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
Length = 310
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 105/192 (54%), Gaps = 9/192 (4%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + V+ D+ G +C +CG V VDE EWR F+ +S+ DP RVG +NP
Sbjct: 14 CNECGEVNSVIEDYRNGFNVCGKCGCVFREKIVDEGGEWRNFS-DSTKGDPSRVGSAINP 72
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLV 123
L L TVI+ + S +L ++Q ++ PDR L FK I + +R L
Sbjct: 73 FLDVEQLDTVISAGSGANSY-----NLNRIQMKNYMRGPDRVLKNGFKLIQSFCERGFLT 127
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI D+A I+K VE +K L+G+N E + AC+YIAC+ E PRT +E SV K+E
Sbjct: 128 QTIIDKAQAIFKDVESKKLLKGKNLEGCIGACIYIACKTEGCPRTFQEI-SVITVVPKRE 186
Query: 184 IGRAKEFIVKHL 195
IG+ + I K +
Sbjct: 187 IGKCYKLISKEM 198
>gi|393246466|gb|EJD53975.1| cyclin-like protein [Auricularia delicata TFB-10046 SS5]
Length = 349
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 83/229 (36%), Positives = 128/229 (55%), Gaps = 16/229 (6%)
Query: 6 CADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C DC+ + ++V + +GD +C+ CGLVL VD SEWR FAN+ D DP RVG +
Sbjct: 30 CPDCRDPVPKIVEEFGSGDLVCATCGLVLGDRIVDTRSEWRTFANDEGD-DPSRVGAAQD 88
Query: 65 PLLS-GGGLSTVIA--KPTAGGSTELL-SGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
PLL L+T I G + EL + S G ARS +R++ AF+ IS M D
Sbjct: 89 PLLDEQDQLATAIGFRDGNTGVARELQRAASRGMNGARS---ERSIQTAFREISNMCDSF 145
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
L +I D A ++YK+ +++K LR ++ +A++AAC++IACRQ PRT +E C +
Sbjct: 146 SLPKSISDIAKQLYKRADEEKLLRAKSLDAVIAACIFIACRQAQVPRTFREICELTR-VP 204
Query: 181 KKEIGRAKEFIVKHLE---AEMGQSVEMGTIHAS---DYLRRFCSNLGM 223
KK IG+ + + + G + + G + + D L R+C++LG+
Sbjct: 205 KKIIGQCYKTLEQAFNLAPGANGSTNDRGIVAGTGPEDLLVRYCNHLGL 253
>gi|119491805|ref|XP_001263397.1| transcription initiation protein [Neosartorya fischeri NRRL 181]
gi|119411557|gb|EAW21500.1| transcription initiation protein [Neosartorya fischeri NRRL 181]
Length = 350
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 122/240 (50%), Gaps = 24/240 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +C+ + + + +T+C CGLVL +D SEWR F+N+ ++D P RVG N
Sbjct: 25 CPECREVPPNLEFPDSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDATN 84
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T IA +G + EL + + S ++ L+ A+K I A+ D +
Sbjct: 85 PLLNGDQLETQIASGGSGRARELYRA---QNKQSSEKANKALLAAYKEIGALCDGFNIQK 141
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++QE I+A C++IACRQ PRT E +V T+KEI
Sbjct: 142 NVADTAKYLFKIVDDAKAFKGKSQEVIIAGCIFIACRQCKVPRTFTEIFAVTK-VTRKEI 200
Query: 185 GR-----AKEFIVKHLEAEMGQSVEMGTI-------------HASDYLRRFCSNLGMTNQ 226
GR K F ++LE + V G + SD RFC+ L + Q
Sbjct: 201 GRIYKALEKFFTAQNLE-RINAVVSSGGVPDPNDTYTATTSTKPSDLCNRFCNLLDLPYQ 259
>gi|70999680|ref|XP_754557.1| transcription initiation protein [Aspergillus fumigatus Af293]
gi|66852194|gb|EAL92519.1| transcription initiation protein [Aspergillus fumigatus Af293]
gi|159127570|gb|EDP52685.1| transcription initiation protein [Aspergillus fumigatus A1163]
Length = 422
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 122/240 (50%), Gaps = 24/240 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +C+ + + + +T+C CGLVL +D SEWR F+N+ ++D P RVG N
Sbjct: 97 CPECREVPPNLEFPDSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDATN 156
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T IA +G + EL + + S ++ L+ A+K I A+ D +
Sbjct: 157 PLLNGDQLETQIASGGSGRARELYRA---QNKQSSEKANKALLAAYKEIGALCDGFNIQK 213
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++QE I+A C++IACRQ PRT E +V T+KEI
Sbjct: 214 NVADTAKYLFKIVDDAKAFKGKSQEVIIAGCIFIACRQCKVPRTFTEIFAVTK-VTRKEI 272
Query: 185 GR-----AKEFIVKHLEAEMGQSVEMGTI-------------HASDYLRRFCSNLGMTNQ 226
GR K F ++LE + V G + SD RFC+ L + Q
Sbjct: 273 GRIYKALEKFFTAQNLE-RINAVVSSGGVPDPNDTYTATTSTKPSDLCNRFCNLLDLPYQ 331
>gi|148642484|ref|YP_001272997.1| transcription initiation factor IIB [Methanobrevibacter smithii
ATCC 35061]
gi|222446016|ref|ZP_03608531.1| hypothetical protein METSMIALI_01665 [Methanobrevibacter smithii
DSM 2375]
gi|261349445|ref|ZP_05974862.1| transcription initiation factor IIB [Methanobrevibacter smithii DSM
2374]
gi|189029858|sp|A5UKA1.1|TF2B_METS3 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|148551501|gb|ABQ86629.1| transcription initiation factor TFIIB (zinc-binding)
[Methanobrevibacter smithii ATCC 35061]
gi|222435581|gb|EEE42746.1| transcription initiation factor IIB [Methanobrevibacter smithii DSM
2375]
gi|288861808|gb|EFC94106.1| transcription initiation factor IIB [Methanobrevibacter smithii DSM
2374]
Length = 310
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 129/245 (52%), Gaps = 19/245 (7%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
+ C +C TE++ D+ + +C+ CGLV++ VD EWR F +E D RVG P+
Sbjct: 12 TVCPECGS-TELIGDYERAEVVCAHCGLVIDENLVDMGPEWRAFDHEQRDKR-TRVGAPI 69
Query: 64 NPLLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSI 113
+ GLST+I K G + + L K Q + S +RNL A +
Sbjct: 70 TYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSEL 129
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
S RLGL ++++ A+ +Y+ D K +RGR+ E +VAA LY ACR+ N PRT+ E
Sbjct: 130 DRDSSRLGLPRSVREAASVVYRSAVDNKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIA 189
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
V+ TKKE+GR F+ + L ++++ DY+ RF S LG++ +A A E
Sbjct: 190 EVSR-VTKKEVGRTYRFLTREL------NIKLPPTSPVDYVPRFASELGLSGEAQSRAIE 242
Query: 234 AVQKS 238
++K+
Sbjct: 243 IIEKA 247
>gi|367045134|ref|XP_003652947.1| hypothetical protein THITE_2170336 [Thielavia terrestris NRRL 8126]
gi|347000209|gb|AEO66611.1| hypothetical protein THITE_2170336 [Thielavia terrestris NRRL 8126]
Length = 349
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 85/239 (35%), Positives = 126/239 (52%), Gaps = 29/239 (12%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS-DHDPVRVGGPL 63
C DCK +V + S+GD +C+ CGLVL +D SEWR F+N+ + DP RVG
Sbjct: 27 CPDCKESPPNLVEETSSGDVVCASCGLVLGERIIDSRSEWRTFSNDDQGNDDPSRVGEGP 86
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKL-QARSSHPDRNLIQAFKSISAMSDRLGL 122
N ++ G L T IA G + + L+ K+ Q + S + L+ A++ I +++D +
Sbjct: 87 NLMIDGDQLQTAIA--YDGKNAKNLAHLQNKINQDKGS---KALMAAYRDIQSLTDSINA 141
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+ + A I+K VED K L+G++QEAI+A C++IACRQ PRT +E + +KK
Sbjct: 142 GAQVANAAKHIFKMVEDNKALKGKSQEAIIAGCIFIACRQTGVPRTFREIYGLTK-VSKK 200
Query: 183 EIGRAKEFIVKHLE--------------AEMGQSVEM--GTIHASDYLRRFCSNLGMTN 225
EIGR + K LE A + V M G+ A + R+CSNL N
Sbjct: 201 EIGR----VFKQLEVFLQKMGGEDAIAQASLFNQVYMAKGSTSAVELCARYCSNLHFRN 255
>gi|409079539|gb|EKM79900.1| hypothetical protein AGABI1DRAFT_113149 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426192509|gb|EKV42445.1| hypothetical protein AGABI2DRAFT_195784 [Agaricus bisporus var.
bisporus H97]
Length = 349
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 129/230 (56%), Gaps = 21/230 (9%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C DC+ ++ + +GD +C CGLVL VD SEWR FAN+ D DP RVG +
Sbjct: 32 CPDCRDPNPNIIEEFGSGDLVCGSCGLVLGDRVVDTRSEWRTFANDEGD-DPSRVGAASD 90
Query: 65 PLLSG-GGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
PL+ G L TVI+ GGS +++SS +RN++ AF+ IS+ D+ L
Sbjct: 91 PLMEGIEQLDTVISF-RDGGSGIARELQRAASRSQSSRSERNILTAFRDISSWCDQFSLP 149
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI D A ++YK+ +++K LRG+ +A++AAC++IACRQ + PRT +E C++ + +KK
Sbjct: 150 KTISDIAKQLYKRSDEEKLLRGKPLDAVIAACIFIACRQAHVPRTFREICTLTH-VSKKV 208
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHAS----------DYLRRFCSNLGM 223
+G+ + + E ++ G H S + L R+C++L +
Sbjct: 209 LGQCYKAL------EQAFNLSPGATHNSNSSSTPTGPENLLVRYCNHLDL 252
>gi|402080319|gb|EJT75464.1| transcription initiation factor IIB [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 348
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 121/231 (52%), Gaps = 15/231 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DC R T + + S+GD +CSECGLV+ VD SEWR FAN+ DP RVG +P
Sbjct: 23 CKDCDRPTALFEESSSGDLVCSECGLVVGDRIVDTRSEWRTFANDEGGDDPSRVGDAGDP 82
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDR---NLIQAFKSISAMSDRLGL 122
+ + G L T I ++ + G L ++ + DR L +F IS D+L
Sbjct: 83 IWNDGSLETKIDTSRGQNASGRIIGRLNNANKKTQN-DRGQAGLQASFAKISEHVDKLQG 141
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+ D A ++K V+D K L+G++ EA++A C++IACR N RT +E ++ + +KK
Sbjct: 142 GKPVLDYARHLFKMVDDAKFLKGKSPEAVIAGCIFIACRANNVGRTFREIHALTS-VSKK 200
Query: 183 EIGRA----KEFIVKHLEAEM------GQSVEMGTIHASDYLRRFCSNLGM 223
EIGR ++F+ ++ EA G A + R+C++LG
Sbjct: 201 EIGRVYKSLEDFVKRNPEATKNGLNAHADEDAKGPTPAEELCIRYCASLGF 251
>gi|254166941|ref|ZP_04873795.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|254168893|ref|ZP_04875733.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289596150|ref|YP_003482846.1| Transcription factor TFIIB cyclin-related protein [Aciduliprofundum
boonei T469]
gi|197622157|gb|EDY34732.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|197624551|gb|EDY37112.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289533937|gb|ADD08284.1| Transcription factor TFIIB cyclin-related protein [Aciduliprofundum
boonei T469]
Length = 312
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 129/248 (52%), Gaps = 19/248 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T +V D+ G+ +C +CGLV++ +D+ EWR F +E D R G P+
Sbjct: 16 CPECGS-THLVRDYERGELVCMDCGLVIDESYIDQGPEWRAFDSEQRDSR-TRTGAPMTY 73
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSISA 115
+ GLST I+ K + G + S + L K Q R S+ +RNL QA + +
Sbjct: 74 TIHDKGLSTEISWKNKDSYGKNIPTRSRAQLYRLRKWQKRIRVSNSAERNLSQALQELER 133
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
MS LGL +++ A IY+K + +RGR+ E +VAA +Y ACR PRT++E +V
Sbjct: 134 MSSNLGLPKDVRETAAVIYRKAVKENMIRGRSIEGVVAASIYAACRMLGIPRTLEEISTV 193
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
K+EIGR + + L+ + + DY+ RFCS L ++ + K A E +
Sbjct: 194 TR-IKKREIGRVYRIMSRTLK------LNIYPTKPEDYIDRFCSKLKLSGEVKKKAYEII 246
Query: 236 QKSEDLDI 243
+ + + DI
Sbjct: 247 KMARERDI 254
>gi|400595996|gb|EJP63780.1| transcription factor TFIIB [Beauveria bassiana ARSEF 2860]
Length = 348
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 125/235 (53%), Gaps = 18/235 (7%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C DC+ + +V + S+GD +C CG+V+ +D SEWR FAN+ + DP RVGGP
Sbjct: 24 CPDCREIPPNLVEEFSSGDMVCQSCGVVVGTRIIDTRSEWRTFANDDQNGDDPSRVGGPQ 83
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
+ + G L+T +A + LL Q + + L+QA+K I ++ + + +
Sbjct: 84 DEFVEGQQLATSVAFSESRQHKNLLRVQNNTNQDKQQ---KGLMQAYKEIVSLCEAINMG 140
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+ + A I+K V+ K ++G+ QEA++A C++IACRQ N PRT +E ++ + +KKE
Sbjct: 141 QNVSNAAKHIFKLVDKYKFMKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTS-VSKKE 199
Query: 184 IGRA----KEFIVKHLEAEMGQSVEMGTIH--------ASDYLRRFCSNLGMTNQ 226
+GR + F+ K + E + + T+ A D R+ S LG +Q
Sbjct: 200 VGRVFKQLQNFLQKLQDTEGEGATGLNTVTNYENTSVGAEDLCSRYVSQLGFKSQ 254
>gi|67537516|ref|XP_662532.1| hypothetical protein AN4928.2 [Aspergillus nidulans FGSC A4]
gi|40741816|gb|EAA61006.1| hypothetical protein AN4928.2 [Aspergillus nidulans FGSC A4]
gi|259482202|tpe|CBF76459.1| TPA: transcription initiation protein (AFU_orthologue;
AFUA_3G10620) [Aspergillus nidulans FGSC A4]
Length = 351
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 122/239 (51%), Gaps = 22/239 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +CK + + + +T+C CGLVL +D SEWR F+N+ ++D P RVG N
Sbjct: 26 CPECKEMPPNLEFPGSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDATN 85
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T IA +GGS + + + S +++L+ A+K I A+ D G+
Sbjct: 86 PLLNGDQLETQIA---SGGSGRVRDLYRAQNKQSSDKANKSLLAAYKEIGALCDGFGIPK 142
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACR+ PRT E +V ++KEI
Sbjct: 143 NVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRKCKVPRTFTEIFAVTK-VSRKEI 201
Query: 185 GR-----AKEFIVKHLEAEMGQSVEMG------------TIHASDYLRRFCSNLGMTNQ 226
GR K F ++LE G + SD RFC+ L + Q
Sbjct: 202 GRIYKALEKFFTSQNLERANAVVSNGGVPDPNDTYTATTSTKPSDLCSRFCNLLDLPFQ 260
>gi|354611426|ref|ZP_09029382.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353196246|gb|EHB61748.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 330
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/251 (32%), Positives = 124/251 (49%), Gaps = 20/251 (7%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D C +C ++V D G+T+C ECGLV+E S+D EWR F N + + RVG P
Sbjct: 31 DIACPECS--GDLVVDEERGETVCGECGLVVEEDSIDRGPEWRAF-NATENDQKSRVGAP 87
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFKS 112
++ GLST I LSG L K R + +RNL QA
Sbjct: 88 TTNMMHDKGLSTNIGWQNKDAYGNSLSGRQRRKMQRLRKWNERFRTRNSKERNLKQALGE 147
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I MS LGL +++ A+ IY++ ++ L GR+ E + + LY A RQ N PR++ E
Sbjct: 148 IERMSSALGLPDNVRETASVIYRRALNEDLLPGRSIEGVATSALYAAARQANTPRSLDEV 207
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
+V+ + EI R ++V+ L +E+ + Y+ RFCS L + ++ + A+
Sbjct: 208 ANVSR-VERDEIARTYRYVVREL------GLEVAPTDPASYVPRFCSELDLPDEVERRAR 260
Query: 233 EAVQKSEDLDI 243
E + +ED I
Sbjct: 261 ELLTAAEDAGI 271
>gi|366998229|ref|XP_003683851.1| hypothetical protein TPHA_0A03400 [Tetrapisispora phaffii CBS 4417]
gi|357522146|emb|CCE61417.1| hypothetical protein TPHA_0A03400 [Tetrapisispora phaffii CBS 4417]
Length = 352
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 141/274 (51%), Gaps = 24/274 (8%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK +VV S GD +C+ CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 24 CPECKVYPPKVVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDQNGDDPSRVGEAA 83
Query: 64 NPLLSGGGLSTVIAKPTAGGSTEL-LSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRL 120
NPLL G LST I + G ST++ + L + Q ++ D + AF I+ + D
Sbjct: 84 NPLLDGNNLSTRIGQ---GESTDMRFTKELNRAQGKNVMDKKDHEVQAAFAKITMLCDAA 140
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
L +KD A E YK D+K LRG++ E+++AA + I CR+ + RT KE S+ + T
Sbjct: 141 ELPKIVKDCAKEAYKLCHDEKSLRGKSSESVMAASILIGCRRASVARTFKEIQSIIHVKT 200
Query: 181 KKEIGRAKEF---IVKHLEAEMGQSVEMGTIHASD---YLRRFCSNLGMTNQAVKAAQEA 234
KE G+ I++ A+ ++ + + Y+ RFCS+LG+ Q +A+
Sbjct: 201 -KEFGKTLAIMKGILREKSADGFIKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYT 259
Query: 235 VQKSEDLD---------IRLILVFFSLFLVETHI 259
K ++++ I ++ ++ ++ L + I
Sbjct: 260 AAKCKEIEEIAGKSPITIAVVSIYLNILLFKIPI 293
>gi|207340326|gb|EDZ68710.1| YPR086Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 331
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 140/276 (50%), Gaps = 28/276 (10%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH---DPVRVGG 61
C +CK ++V S GD +C+ CGLVL VD SEWR F+N+ DH DP RVG
Sbjct: 10 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSND--DHNGDDPSRVGE 67
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTEL-LSGSLGKLQARS--SHPDRNLIQAFKSISAMSD 118
NPLL G LST I K G +T++ + L K Q ++ D + AF I+ + D
Sbjct: 68 ASNPLLDGNNLSTRIGK---GETTDMRFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCD 124
Query: 119 RLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG 178
L +KD A E YK D+K L+G++ E+I+AA + I CR+ RT KE S+ +
Sbjct: 125 AAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHV 184
Query: 179 TTKKEIGRAKEFIVKHL--EAEMG----QSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
T KE G+ + L ++E G + M Y+ RFCS+LG+ Q +A+
Sbjct: 185 KT-KEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAE 243
Query: 233 EAVQKSEDLD---------IRLILVFFSLFLVETHI 259
+K +++ I ++ ++ ++ L + I
Sbjct: 244 YTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPI 279
>gi|241958734|ref|XP_002422086.1| general transcription facto TFIIB, putative; transcription
initiation factor IIB, putative [Candida dubliniensis
CD36]
gi|223645431|emb|CAX40087.1| general transcription facto TFIIB, putative [Candida dubliniensis
CD36]
Length = 346
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 133/251 (52%), Gaps = 14/251 (5%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C DCK+ ++V S GD IC +CGLVL VD SEWR F N+ + DP RVG
Sbjct: 22 CPDCKQFPPDLVERFSEGDIICGQCGLVLSDRIVDTRSEWRTFQNDDKNTDDPSRVGDAS 81
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRN--LIQAFKSISAMSDRLG 121
N L L+T+I+ ++ +L K+Q +S +N L A++ IS + +
Sbjct: 82 NSLYDNEDLTTMISY-APNSNSSGSKNNLNKIQQKSLVDKKNYALQTAYQKISELCNGYQ 140
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L + D A +YK V + + L+G+ Q++I+AA + + CR+ + PRT++E ++ N TK
Sbjct: 141 LPKSASDAAKHLYKAVREDRLLKGKTQDSIMAAAILLGCRRADVPRTLEEIRALTNVPTK 200
Query: 182 ---KEIGRAKEFIVKHLEAE------MGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
K G K+ I HL E + ++ + T A D +RRFCS+LG++ A++
Sbjct: 201 QIAKVTGLIKKIIRSHLNNEDASTSIVDETSSLTTHSAEDLIRRFCSHLGLSLTITSASE 260
Query: 233 EAVQKSEDLDI 243
+K DL +
Sbjct: 261 YVARKCHDLGV 271
>gi|156844090|ref|XP_001645109.1| hypothetical protein Kpol_538p11 [Vanderwaltozyma polyspora DSM
70294]
gi|156115766|gb|EDO17251.1| hypothetical protein Kpol_538p11 [Vanderwaltozyma polyspora DSM
70294]
Length = 357
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 141/274 (51%), Gaps = 24/274 (8%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK +VV S GD +C+ CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 26 CPECKVYPPKVVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDQNGDDPSRVGEAS 85
Query: 64 NPLLSGGGLSTVIAKPTAGGSTEL-LSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRL 120
NPLL G LST I + G ST++ + L + Q ++ D + AF I+ + D
Sbjct: 86 NPLLDGNNLSTRIGQ---GESTDVRFTKELNRAQGKNVVDKKDNEVQAAFAKITMLCDAA 142
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
L +KD A E YK D+K LRG++ E+I+AA + I CR+ + RT KE S+ + T
Sbjct: 143 ELPKIVKDCAKEAYKLCHDEKSLRGKSSESIMAASILIGCRRASVARTFKEIQSIIHVKT 202
Query: 181 KKEIGRAKEF---IVKHLEAEMGQSVEMGTIHASD---YLRRFCSNLGMTNQAVKAAQEA 234
KE G+ I++ A+ ++ + + Y+ RFCS+LG+ Q +A+
Sbjct: 203 -KEFGKTLAIMKGILREKSADGFIKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYT 261
Query: 235 VQKSEDLD---------IRLILVFFSLFLVETHI 259
K ++++ I ++ ++ ++ L + I
Sbjct: 262 AAKCKEIEEIAGKSPITIAVVSIYMNILLFKIPI 295
>gi|51013915|gb|AAT93251.1| YPR086W [Saccharomyces cerevisiae]
Length = 345
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 140/276 (50%), Gaps = 28/276 (10%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH---DPVRVGG 61
C +CK ++V S GD +C+ CGLVL VD SEWR F+N+ DH DP RVG
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSND--DHNGDDPSRVGE 81
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTEL-LSGSLGKLQARS--SHPDRNLIQAFKSISAMSD 118
NPLL G LST I K G +T++ + L K Q ++ D + AF I+ + D
Sbjct: 82 ASNPLLDGNNLSTRIGK---GETTDMRFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCD 138
Query: 119 RLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG 178
L +KD A E YK D+K L+G++ E+I+AA + I CR+ RT KE S+ +
Sbjct: 139 AAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHV 198
Query: 179 TTKKEIGRAKEFIVKHL--EAEMG----QSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
T KE G+ + L ++E G + M Y+ RFCS+LG+ Q +A+
Sbjct: 199 KT-KEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAE 257
Query: 233 EAVQKSEDLD---------IRLILVFFSLFLVETHI 259
+K +++ I ++ ++ ++ L + I
Sbjct: 258 YTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPI 293
>gi|151942867|gb|EDN61213.1| TFIIB [Saccharomyces cerevisiae YJM789]
gi|190408019|gb|EDV11284.1| transcription initiation factor IIB [Saccharomyces cerevisiae
RM11-1a]
gi|256272187|gb|EEU07182.1| Sua7p [Saccharomyces cerevisiae JAY291]
gi|259150239|emb|CAY87042.1| Sua7p [Saccharomyces cerevisiae EC1118]
gi|323306830|gb|EGA60115.1| Sua7p [Saccharomyces cerevisiae FostersO]
gi|323331334|gb|EGA72752.1| Sua7p [Saccharomyces cerevisiae AWRI796]
gi|323335165|gb|EGA76455.1| Sua7p [Saccharomyces cerevisiae Vin13]
gi|323346315|gb|EGA80605.1| Sua7p [Saccharomyces cerevisiae Lalvin QA23]
gi|323350223|gb|EGA84370.1| Sua7p [Saccharomyces cerevisiae VL3]
gi|349581892|dbj|GAA27049.1| K7_Sua7p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365762560|gb|EHN04094.1| Sua7p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 345
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 140/276 (50%), Gaps = 28/276 (10%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH---DPVRVGG 61
C +CK ++V S GD +C+ CGLVL VD SEWR F+N+ DH DP RVG
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSND--DHNGDDPSRVGE 81
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTEL-LSGSLGKLQARS--SHPDRNLIQAFKSISAMSD 118
NPLL G LST I K G +T++ + L K Q ++ D + AF I+ + D
Sbjct: 82 ASNPLLDGNNLSTRIGK---GETTDMRFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCD 138
Query: 119 RLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG 178
L +KD A E YK D+K L+G++ E+I+AA + I CR+ RT KE S+ +
Sbjct: 139 AAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHV 198
Query: 179 TTKKEIGRAKEFIVKHL--EAEMG----QSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
T KE G+ + L ++E G + M Y+ RFCS+LG+ Q +A+
Sbjct: 199 KT-KEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAE 257
Query: 233 EAVQKSEDLD---------IRLILVFFSLFLVETHI 259
+K +++ I ++ ++ ++ L + I
Sbjct: 258 YTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPI 293
>gi|6325343|ref|NP_015411.1| Sua7p [Saccharomyces cerevisiae S288c]
gi|135633|sp|P29055.1|TF2B_YEAST RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB; AltName:
Full=Transcription factor E
gi|269914562|pdb|3K7A|M Chain M, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|414145458|pdb|4BBR|M Chain M, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145471|pdb|4BBS|M Chain M, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|172777|gb|AAA35126.1| Sua7 [Saccharomyces cerevisiae]
gi|1230692|gb|AAB68135.1| Sua7p: Transcription initiation factor IIB (Swiss Prot. accession
number P29055) [Saccharomyces cerevisiae]
gi|285815612|tpg|DAA11504.1| TPA: Sua7p [Saccharomyces cerevisiae S288c]
gi|392296094|gb|EIW07197.1| Sua7p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 345
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 140/276 (50%), Gaps = 28/276 (10%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH---DPVRVGG 61
C +CK ++V S GD +C+ CGLVL VD SEWR F+N+ DH DP RVG
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSND--DHNGDDPSRVGE 81
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTEL-LSGSLGKLQARS--SHPDRNLIQAFKSISAMSD 118
NPLL G LST I K G +T++ + L K Q ++ D + AF I+ + D
Sbjct: 82 ASNPLLDGNNLSTRIGK---GETTDMRFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCD 138
Query: 119 RLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG 178
L +KD A E YK D+K L+G++ E+I+AA + I CR+ RT KE S+ +
Sbjct: 139 AAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHV 198
Query: 179 TTKKEIGRAKEFIVKHL--EAEMG----QSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
T KE G+ + L ++E G + M Y+ RFCS+LG+ Q +A+
Sbjct: 199 KT-KEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAE 257
Query: 233 EAVQKSEDLD---------IRLILVFFSLFLVETHI 259
+K +++ I ++ ++ ++ L + I
Sbjct: 258 YTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPI 293
>gi|121705606|ref|XP_001271066.1| transcription initiation protein [Aspergillus clavatus NRRL 1]
gi|119399212|gb|EAW09640.1| transcription initiation protein [Aspergillus clavatus NRRL 1]
Length = 350
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 122/240 (50%), Gaps = 24/240 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +C+ + + + +T+C CGLVL +D SEWR F+N+ ++D P RVG N
Sbjct: 25 CPECREVPPNLEFPDSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDATN 84
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T IA +G + +L + + S ++ L+ A+K I A+ D +
Sbjct: 85 PLLNGDQLETQIASGGSGRARDLYRA---QNKQSSEKANKALLAAYKEIGALCDGFNIQK 141
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACRQ PRT E +V T+KEI
Sbjct: 142 NVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTK-VTRKEI 200
Query: 185 GR-----AKEFIVKHLEAEMGQSVEMGTI-------------HASDYLRRFCSNLGMTNQ 226
GR K F ++LE + V G + SD RFC+ L + Q
Sbjct: 201 GRIYKALEKFFTAQNLE-RINAVVSSGGVPDPNDTYTATTSTKPSDLCNRFCNLLDLPYQ 259
>gi|346978629|gb|EGY22081.1| transcription initiation factor IIB [Verticillium dahliae VdLs.17]
Length = 352
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 119/233 (51%), Gaps = 24/233 (10%)
Query: 6 CADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES-SDHDPVRVGGPL 63
C DC+ + +V + S+GD +C CGLV+ +D SEWR FAN+ + DP RVG
Sbjct: 30 CPDCREQPPNLVEEFSSGDMVCGSCGLVVGERIIDTRSEWRTFANDDQGNDDPSRVGDAG 89
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRN---LIQAFKSISAMSDRL 120
NPLL G L T IA S +L ++Q +S D+N + AF+ ISA +D +
Sbjct: 90 NPLLDGAQLETSIAF-----SEGRDHKNLARIQNKS-QTDKNTKAIGSAFREISAFTDSI 143
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
L + D A IYK D ++G+ QEA+VA C++IACRQ RT +E V N +
Sbjct: 144 NLGKNVADGAKHIYKLCHDHSFMKGKPQEALVAGCIFIACRQAGVGRTFREIYQVTN-VS 202
Query: 181 KKEIGRA----KEFIVKHLEAEMGQSV--------EMGTIHASDYLRRFCSNL 221
KKEIGR + F+ K E G + + +A D RF S L
Sbjct: 203 KKEIGRVFKALESFLQKIKETNPGGNAIQDLSGYKASTSTNAEDLCTRFTSQL 255
>gi|169770601|ref|XP_001819770.1| transcription initiation factor IIB [Aspergillus oryzae RIB40]
gi|238486960|ref|XP_002374718.1| transcription initiation protein [Aspergillus flavus NRRL3357]
gi|83767629|dbj|BAE57768.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220699597|gb|EED55936.1| transcription initiation protein [Aspergillus flavus NRRL3357]
gi|391867301|gb|EIT76547.1| transcription initiation factor TFIIB [Aspergillus oryzae 3.042]
Length = 350
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 121/239 (50%), Gaps = 22/239 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +CK + + + +T+C CGLVL +D SEWR F+N+ ++D P RVG N
Sbjct: 25 CPECKEVPPNLEFPGSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDASN 84
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T IA +GGS + + + S +++L+ A+K I A+ D +
Sbjct: 85 PLLNGDQLETQIA---SGGSGRVRDLYRAQNKQSSEKANKSLLAAYKEIGALCDGFSIQK 141
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACRQ PRT E +V ++KEI
Sbjct: 142 NVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTK-VSRKEI 200
Query: 185 GR-----AKEFIVKHLEAEMGQSVEMG------------TIHASDYLRRFCSNLGMTNQ 226
GR K F ++LE G + SD RFC+ L + Q
Sbjct: 201 GRIYKALEKFFTAQNLERNNAVVSNGGVPDPNDTYTATTSTKPSDLCNRFCNLLDLPFQ 259
>gi|302412198|ref|XP_003003932.1| transcription initiation factor IIB [Verticillium albo-atrum
VaMs.102]
gi|261357837|gb|EEY20265.1| transcription initiation factor IIB [Verticillium albo-atrum
VaMs.102]
Length = 352
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 119/233 (51%), Gaps = 24/233 (10%)
Query: 6 CADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES-SDHDPVRVGGPL 63
C DC+ + +V + S+GD +C CGLV+ +D SEWR FAN+ + DP RVG
Sbjct: 30 CPDCREQPPNLVEEFSSGDMVCGSCGLVVGERIIDTRSEWRTFANDDQGNDDPSRVGDAG 89
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRN---LIQAFKSISAMSDRL 120
NPLL G L T IA S +L ++Q +S D+N + AF+ ISA +D +
Sbjct: 90 NPLLDGAQLETSIAF-----SEGRDHKNLARIQNKS-QTDKNTKAIGSAFREISAFTDSI 143
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
L + D A IYK D ++G+ QEA+VA C++IACRQ RT +E V N +
Sbjct: 144 NLGKNVADGAKHIYKLCHDHSFMKGKPQEALVAGCIFIACRQAGVGRTFREIYQVTN-VS 202
Query: 181 KKEIGRA----KEFIVKHLEAEMGQSV--------EMGTIHASDYLRRFCSNL 221
KKEIGR + F+ K E G + + +A D RF S L
Sbjct: 203 KKEIGRVFKALESFLQKIKETNPGGNAIQDLSGYKASTSTNAEDLCTRFTSQL 255
>gi|401623146|gb|EJS41253.1| sua7p [Saccharomyces arboricola H-6]
Length = 345
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 140/276 (50%), Gaps = 28/276 (10%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH---DPVRVGG 61
C +CK ++V S GD +C+ CGLVL VD SEWR F+N+ DH DP RVG
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSND--DHNGDDPSRVGE 81
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTEL-LSGSLGKLQARS--SHPDRNLIQAFKSISAMSD 118
NPLL G LST I K G +T++ + L K Q ++ D + AF I+ + D
Sbjct: 82 ASNPLLDGNNLSTRIGK---GETTDMRFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCD 138
Query: 119 RLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG 178
L +KD A E YK D+K L+G++ E+I+AA + I CR+ RT KE S+ +
Sbjct: 139 AAELPKIVKDCAKEAYKLCHDEKALKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHV 198
Query: 179 TTKKEIGRAKEFIVKHL--EAEMG----QSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
T KE G+ + L ++E G + M Y+ RFCS+LG+ Q +A+
Sbjct: 199 KT-KEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAE 257
Query: 233 EAVQKSEDLD---------IRLILVFFSLFLVETHI 259
+K +++ I ++ ++ ++ L + I
Sbjct: 258 YTAKKCKEIKEIAGKSPITIAVVSIYLNVLLFKIPI 293
>gi|443927143|gb|ELU45667.1| transcription initiation factor IIB [Rhizoctonia solani AG-1 IA]
Length = 354
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 129/245 (52%), Gaps = 21/245 (8%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWR---IFANESSDHDPVRVGG 61
C +CK + ++V + +GD +C +CGLVL VD SE FAN+ D DP RVG
Sbjct: 31 CPECKDMNPKIVEEFGSGDLVCGDCGLVLGDRIVDTRSECECPHTFANDEGD-DPSRVGA 89
Query: 62 PLNPLLSG-GGLSTVIAKPTAGGSTELLSGSLGKLQARSS--HPDRNLIQAFKSISAMSD 118
NPLL G L TVI+ G ++ L + AR S +RN++ AF+ ISAM +
Sbjct: 90 ATNPLLEGIEQLDTVISFKDGGSG---MARELQRAAARGSVGKNERNMMTAFRDISAMCE 146
Query: 119 RLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG 178
+ L + D A ++YK+ E++K +RG++ +A+VA C+ IACRQ N PRT KE +
Sbjct: 147 SISLPKNVSDTAKQLYKRAEEEKIVRGKSADAVVACCILIACRQANVPRTFKEIHQLTR- 205
Query: 179 TTKKEIGRAKEFIVKHL--------EAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKA 230
KK +G+ + + + + G GT A + L R+C+ L + V A
Sbjct: 206 VPKKTLGQCFKAFEQAFDLSRPAPADGQDGAGPASGT-SAENLLNRYCNQLHLHASVVTA 264
Query: 231 AQEAV 235
+E V
Sbjct: 265 CEEVV 269
>gi|326482199|gb|EGE06209.1| transcription initiation factor IIB [Trichophyton equinum CBS
127.97]
Length = 352
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 123/245 (50%), Gaps = 24/245 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +CK + S +TIC CGLVL +D SEWR F+N+ ++D P RVG N
Sbjct: 27 CPECKENPPNLVPESH-ETICGSCGLVLADREIDPHSEWRTFSNDDQNNDDPSRVGDASN 85
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T I+ T G + L + K+ +++ + L+ A+K I ++ D +
Sbjct: 86 PLLNGNQLETQISFGTGGARSRELHRAQSKMSTENTN--KALLAAYKEIGSLCDGFNIQK 143
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACRQ PRT E +V +KKEI
Sbjct: 144 NVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTR-VSKKEI 202
Query: 185 GR-----AKEFIVKHLEAEMGQSVEMGTI-------------HASDYLRRFCSNLGMTNQ 226
GR K F ++LE + V G + SD RFC+ L + Q
Sbjct: 203 GRIYKALEKFFTAQNLE-RINSVVSSGGVPDPNDSYTGTTSTKPSDLCNRFCNLLDLPFQ 261
Query: 227 AVKAA 231
+
Sbjct: 262 VTNVS 266
>gi|302508303|ref|XP_003016112.1| hypothetical protein ARB_05509 [Arthroderma benhamiae CBS 112371]
gi|302659336|ref|XP_003021359.1| hypothetical protein TRV_04514 [Trichophyton verrucosum HKI 0517]
gi|291179681|gb|EFE35467.1| hypothetical protein ARB_05509 [Arthroderma benhamiae CBS 112371]
gi|291185255|gb|EFE40741.1| hypothetical protein TRV_04514 [Trichophyton verrucosum HKI 0517]
Length = 338
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 122/245 (49%), Gaps = 24/245 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +CK + S +TIC CGLVL +D SEWR F+N+ ++D P RVG N
Sbjct: 13 CPECKENPPNLVPESH-ETICGSCGLVLADREIDPHSEWRTFSNDDQNNDDPSRVGDASN 71
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T I+ T G + L + K+ ++ + L+ A+K I ++ D +
Sbjct: 72 PLLNGNQLETQISFGTGGARSRELHRAQSKMSTEKTN--KALLAAYKEIGSLCDGFNIQK 129
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACRQ PRT E +V +KKEI
Sbjct: 130 NVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTR-VSKKEI 188
Query: 185 GR-----AKEFIVKHLEAEMGQSVEMGTI-------------HASDYLRRFCSNLGMTNQ 226
GR K F ++LE + V G + SD RFC+ L + Q
Sbjct: 189 GRIYKALEKFFTAQNLE-RINSVVSSGGVPDPNDAYTGTTSTKPSDLCNRFCNLLDLPFQ 247
Query: 227 AVKAA 231
+
Sbjct: 248 VTNVS 252
>gi|401842172|gb|EJT44429.1| SUA7-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 345
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 89/249 (35%), Positives = 130/249 (52%), Gaps = 19/249 (7%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH---DPVRVGG 61
C +CK ++V S GD +C+ CGLVL VD SEWR F+N+ DH DP RVG
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSND--DHNGDDPSRVGE 81
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTEL-LSGSLGKLQARS--SHPDRNLIQAFKSISAMSD 118
NPLL G LST I K G +T++ + L K Q ++ D + AF I+ + D
Sbjct: 82 ASNPLLDGNNLSTRIGK---GETTDMRFTKELNKAQGKNVMDKKDNEVHAAFAKITMLCD 138
Query: 119 RLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG 178
L +KD A E YK D+K L+G++ E+I+AA + I CR+ RT KE S+ +
Sbjct: 139 AAELPKIVKDCAKEAYKLCHDEKALKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHV 198
Query: 179 TTKKEIGRAKEFIVKHL--EAEMG----QSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
T KE G+ + L ++E G + M Y+ RFCS+LG+ Q +A+
Sbjct: 199 KT-KEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAE 257
Query: 233 EAVQKSEDL 241
+K +++
Sbjct: 258 YTAKKCKEI 266
>gi|432328477|ref|YP_007246621.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
gi|432135186|gb|AGB04455.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
Length = 312
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 128/248 (51%), Gaps = 19/248 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T +V D+ G+ +C +CGLV++ +D+ EWR F +E D R G P+
Sbjct: 16 CPECGS-THLVRDYERGELVCMDCGLVIDEAYIDQGPEWRAFDSEQRDSRS-RTGAPMTY 73
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSISA 115
+ GLST I+ K + G S S + L K Q R S+ +RNL QA + +
Sbjct: 74 TIHDKGLSTEISWKNKDSYGKSIPTRSRAQLYRLRKWQKRIRVSNSAERNLSQALQELER 133
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL +++ A IY+K + +RGR+ E +VAA +Y ACR PRT++E +V
Sbjct: 134 MASNLGLPKDVRETAAVIYRKAVKENMIRGRSIEGVVAASIYAACRMLGIPRTLEEISTV 193
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
K+EIGR + + L+ + + DY+ RFCS L ++ + A E +
Sbjct: 194 TR-IKKREIGRVYRIMSRTLK------LNIYPTKPEDYIDRFCSKLKLSGEVKTKAYEII 246
Query: 236 QKSEDLDI 243
+ + + DI
Sbjct: 247 KMARERDI 254
>gi|296824618|ref|XP_002850683.1| transcription initiation factor IIB [Arthroderma otae CBS 113480]
gi|238838237|gb|EEQ27899.1| transcription initiation factor IIB [Arthroderma otae CBS 113480]
Length = 352
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 122/245 (49%), Gaps = 24/245 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +CK + S +TIC CGLVL +D SEWR F+N+ ++D P RVG N
Sbjct: 27 CPECKENPPNLVPESH-ETICGSCGLVLADREIDPHSEWRTFSNDDQNNDDPSRVGDASN 85
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T I+ T G + L + K+ ++ + L+ A+K I ++ D +
Sbjct: 86 PLLNGNQLETQISFGTGGARSRELHRAQNKMSTEKTN--KALLAAYKEIGSLCDGFNIQK 143
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACRQ PRT E +V +KKEI
Sbjct: 144 NVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTR-VSKKEI 202
Query: 185 GR-----AKEFIVKHLEAEMGQSVEMGTI-------------HASDYLRRFCSNLGMTNQ 226
GR K F ++LE + V G + SD RFC+ L + Q
Sbjct: 203 GRIYKALEKFFTAQNLE-RINSVVSNGGVPDPNDAYTGTTSTKPSDLCNRFCNLLDLPFQ 261
Query: 227 AVKAA 231
+
Sbjct: 262 VTNVS 266
>gi|6980707|pdb|1C9B|A Chain A, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980709|pdb|1C9B|E Chain E, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980711|pdb|1C9B|I Chain I, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980713|pdb|1C9B|M Chain M, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980715|pdb|1C9B|Q Chain Q, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
Length = 207
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/141 (46%), Positives = 92/141 (65%), Gaps = 7/141 (4%)
Query: 103 DRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQ 162
DR ++ AFK I+ M+DR+ L I DR N ++K+V +QK L+GR +AI +ACLYIACRQ
Sbjct: 2 DRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQ 61
Query: 163 ENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLG 222
E PRT KE C+V+ +KKEIGR + I+K LE SV++ I D++ RFCSNL
Sbjct: 62 EGVPRTFKEICAVSR-ISKKEIGRCFKLILKALET----SVDL--ITTGDFMSRFCSNLC 114
Query: 223 MTNQAVKAAQEAVQKSEDLDI 243
+ Q AA +K+ +LD+
Sbjct: 115 LPKQVQMAATHIARKAVELDL 135
>gi|327307312|ref|XP_003238347.1| transcription initiation factor IIB [Trichophyton rubrum CBS
118892]
gi|326458603|gb|EGD84056.1| transcription initiation factor IIB [Trichophyton rubrum CBS
118892]
Length = 352
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 121/240 (50%), Gaps = 24/240 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +CK + S +TIC CGLVL +D SEWR F+N+ ++D P RVG N
Sbjct: 27 CPECKENPPNLVPESH-ETICGSCGLVLADREIDPHSEWRTFSNDDQNNDDPSRVGDASN 85
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T I+ T G + L + K+ ++ + L+ A+K I ++ D +
Sbjct: 86 PLLNGNQLETQISFGTGGARSRELHRAQSKMSTEKTN--KALLAAYKEIGSLCDGFNIQK 143
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACRQ PRT E +V +KKEI
Sbjct: 144 NVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTR-VSKKEI 202
Query: 185 GR-----AKEFIVKHLEAEMGQSVEMGTI-------------HASDYLRRFCSNLGMTNQ 226
GR K F ++LE + V G + SD RFC+ L + Q
Sbjct: 203 GRIYKALEKFFTAQNLE-RINSVVSSGGVPDPNDAYTGTTSTKPSDLCNRFCNLLDLPFQ 261
>gi|365757889|gb|EHM99760.1| Sua7p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 352
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 140/276 (50%), Gaps = 28/276 (10%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH---DPVRVGG 61
C +CK ++V S GD +C+ CGLVL VD SEWR F+N+ DH DP RVG
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSND--DHNGDDPSRVGE 81
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTEL-LSGSLGKLQARS--SHPDRNLIQAFKSISAMSD 118
NPLL G LST I K G +T++ + L K Q ++ D + AF I+ + D
Sbjct: 82 ASNPLLDGNNLSTRIGK---GETTDMRFTKELNKAQGKNVMDKKDNEVHAAFAKITMLCD 138
Query: 119 RLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG 178
L +KD A E YK D+K L+G++ E+I+AA + I CR+ RT KE S+ +
Sbjct: 139 AAELPKIVKDCAKEAYKLCHDEKALKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHV 198
Query: 179 TTKKEIGRAKEFIVKHL--EAEMG----QSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
T KE G+ + L ++E G + M Y+ RFCS+LG+ Q +A+
Sbjct: 199 KT-KEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAE 257
Query: 233 EAVQKSEDLD---------IRLILVFFSLFLVETHI 259
+K +++ I ++ ++ ++ L + I
Sbjct: 258 YTAKKCKEIKEIAGKSPITIAVVSIYLNVLLFKIPI 293
>gi|212526306|ref|XP_002143310.1| transcription initiation protein [Talaromyces marneffei ATCC 18224]
gi|210072708|gb|EEA26795.1| transcription initiation protein [Talaromyces marneffei ATCC 18224]
Length = 341
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 88/266 (33%), Positives = 133/266 (50%), Gaps = 20/266 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +CK + + +T+C CGLVL +D SEWR F+N+ ++D P RVG N
Sbjct: 23 CPECKEFPPNLEFPGSHETVCGSCGLVLADREIDIHSEWRTFSNDDQNNDDPSRVGETSN 82
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
LL+G L T IA G + +L KL S ++ L+ A+K I A+ D +
Sbjct: 83 ILLNGNQLETSIAGGATGAARQLYRAQ-NKLS--SEKNNKALMAAYKEIGALCDGFNIQK 139
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACRQ PRT E +V ++KEI
Sbjct: 140 IVADTAKYLFKIVDDHKAFKGKSQDVIIAGCIFIACRQCQAPRTFSEIFAVTK-VSRKEI 198
Query: 185 GR-----AKEFIVKHLEAEMGQSVEMG-----TIHASDYLRRFCSNLGMTNQAVKAA--- 231
GR K F +++E + G + SD RF S LG+ + +A
Sbjct: 199 GRIYKSLEKFFTAQNIERTAVVGADAGFKQTTSTKPSDLCERFGSFLGLDYRTWHSAADL 258
Query: 232 QEAVQKSEDLDIR--LILVFFSLFLV 255
+ V K DL R L +V L++V
Sbjct: 259 SDRVTKDGDLAGRSPLSIVAACLYMV 284
>gi|315055443|ref|XP_003177096.1| transcription initiation factor IIB [Arthroderma gypseum CBS
118893]
gi|311338942|gb|EFQ98144.1| transcription initiation factor IIB [Arthroderma gypseum CBS
118893]
Length = 352
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 121/240 (50%), Gaps = 24/240 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +CK + S +TIC CGLVL +D SEWR F+N+ ++D P RVG N
Sbjct: 27 CPECKENPPNLVPESH-ETICGSCGLVLADREIDPHSEWRTFSNDDQNNDDPSRVGDASN 85
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T I+ T G + L + K+ ++ + L+ A+K I ++ D +
Sbjct: 86 PLLNGNQLETQISFGTGGARSRELHRAQSKMSTEKTN--KALLAAYKEIGSLCDGFNIQK 143
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACRQ PRT E +V +KKEI
Sbjct: 144 NVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTR-VSKKEI 202
Query: 185 GR-----AKEFIVKHLEAEMGQSVEMGTI-------------HASDYLRRFCSNLGMTNQ 226
GR K F ++LE + V G + SD RFC+ L + Q
Sbjct: 203 GRIYKALEKFFTAQNLE-RINSVVSSGGVPDPNDAYTGTTSTKPSDLCNRFCNLLDLPFQ 261
>gi|326470967|gb|EGD94976.1| transcription initiation protein [Trichophyton tonsurans CBS
112818]
Length = 228
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 108/194 (55%), Gaps = 5/194 (2%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +CK + S +TIC CGLVL +D SEWR F+N+ ++D P RVG N
Sbjct: 27 CPECKENPPNLVPESH-ETICGSCGLVLADREIDPHSEWRTFSNDDQNNDDPSRVGDASN 85
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T I+ T G + L + K+ ++ ++ L+ A+K I ++ D +
Sbjct: 86 PLLNGNQLETQISFGTGGARSRELHRAQSKMSTENT--NKALLAAYKEIGSLCDGFNIQK 143
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACRQ PRT E +V +KKEI
Sbjct: 144 NVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTR-VSKKEI 202
Query: 185 GRAKEFIVKHLEAE 198
GR + + K A+
Sbjct: 203 GRIYKALEKFFTAQ 216
>gi|16081986|ref|NP_394398.1| transcription initiation factor IIB [Thermoplasma acidophilum DSM
1728]
gi|14195243|sp|Q9HJM7.1|TF2B1_THEAC RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|10640255|emb|CAC12069.1| transcription initiation factor IIB related protein [Thermoplasma
acidophilum]
Length = 312
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 126/245 (51%), Gaps = 19/245 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T ++ D+ G+ +C ECG V+E +D+ EWR F +E ++ R G P+
Sbjct: 16 CPECGS-TNLIRDYEHGELVCGECGAVIEDAYIDQGPEWRAFDSEQNESR-ARAGSPMTY 73
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSISA 115
+ GLST I+ K + G S + + L K Q R S+ +RNL QA + +
Sbjct: 74 TIHDKGLSTDISWKNKDSYGRSIPTRNRAQLYRLRKWQKRIKVSNAAERNLSQALQELER 133
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ L + +K+ A IY+K Q +RGR+ E +VA LY ACR N PRT+ E SV
Sbjct: 134 MASNLSIPDDVKETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRITNVPRTLGEIASV 193
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
KKEIGR + ++L+ + S A DY+ RFCS L ++ A E +
Sbjct: 194 TR-VKKKEIGRTYRIMSRYLKLNIMPS------KAEDYISRFCSKLKLSMDTRNKALEIL 246
Query: 236 QKSED 240
+ +E+
Sbjct: 247 RSAEN 251
>gi|403214076|emb|CCK68577.1| hypothetical protein KNAG_0B01300 [Kazachstania naganishii CBS
8797]
Length = 369
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 140/274 (51%), Gaps = 24/274 (8%)
Query: 6 CADCKRLTEVVFDHSA-GDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK + + A GD +C+ CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 37 CPECKVYPPKIVERFAEGDVVCALCGLVLSDRLVDTRSEWRTFSNDDQNGDDPSRVGEAS 96
Query: 64 NPLLSGGGLSTVIAKPTAGGSTEL-LSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRL 120
NPLL G LST I + G +T++ + L + Q ++ D + AF I+ +SD
Sbjct: 97 NPLLDGNNLSTRIGQ---GENTDMRFTKELNRAQGKNVVDKKDNEVHAAFAKITMLSDAA 153
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
L +KD A E YK D+K L+G++ E+I+AA + I CR+ RT KE S+ + T
Sbjct: 154 ELPKIVKDCAKEAYKLCHDEKSLKGKSTESIIAASILIGCRRAEVARTFKEIQSIIHVKT 213
Query: 181 KKEIGRAKEFIVKHLEAEMGQS-VEMGTIHAS-----DYLRRFCSNLGMTNQAVKAAQEA 234
KE + + L + +++ T + S Y+ RFCS+LG+ Q AA+
Sbjct: 214 -KEFSKTLSIMKGILREKSSDGFIKINTDNMSGAQNLTYIPRFCSHLGLPMQVTTAAEYT 272
Query: 235 VQKSEDLD---------IRLILVFFSLFLVETHI 259
+K ++++ I ++ ++ ++ L + +
Sbjct: 273 AKKCKEIEEIAGKSPITIAVVSIYLNILLFKIPV 306
>gi|50292269|ref|XP_448567.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527879|emb|CAG61530.1| unnamed protein product [Candida glabrata]
Length = 363
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/274 (31%), Positives = 142/274 (51%), Gaps = 24/274 (8%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK ++V S GD +C+ CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 25 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDQNGDDPSRVGEAS 84
Query: 64 NPLLSGGGLSTVIAKPTAGGSTEL-LSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRL 120
NPLL G LST I + G +T++ + L + Q ++ D + AF I+ + D
Sbjct: 85 NPLLDGNNLSTKIGQ---GETTDMRFTKELNRAQGKNVLDKKDNEIQAAFAKITMLCDAS 141
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
L +KD A E YK D+K L+G++ E+I+AA + + CR+ RT KE S+ + T
Sbjct: 142 ELPKIVKDCAKEAYKLCHDEKALKGKSSESIMAASILLGCRRAEVARTFKEIQSIIHVKT 201
Query: 181 K---KEIGRAKEFIVKHLEAEMGQSVEMGTIHASD---YLRRFCSNLGMTNQAVKAAQEA 234
K K +G K I++ A+ ++ + + Y+ RFCS+LG+ Q +A+
Sbjct: 202 KEFGKTLGIMKN-ILREKSADGFIKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYT 260
Query: 235 VQKSEDLD---------IRLILVFFSLFLVETHI 259
+K ++++ I ++ ++ ++ L + +
Sbjct: 261 AKKCKEIEEIAGKSPITIAVVSIYLNILLFKIPV 294
>gi|68492125|ref|XP_710164.1| likely transcription factor TFIIB [Candida albicans SC5314]
gi|46431308|gb|EAK90894.1| likely transcription factor TFIIB [Candida albicans SC5314]
gi|238879990|gb|EEQ43628.1| transcription initiation factor IIB [Candida albicans WO-1]
Length = 346
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/251 (33%), Positives = 133/251 (52%), Gaps = 14/251 (5%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C DCK+ +++ S GD IC +CGLVL VD SEWR F N+ + DP RVG
Sbjct: 22 CPDCKQFPPDLIERFSEGDIICGQCGLVLSDRIVDTRSEWRTFQNDDKNTDDPSRVGDAS 81
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRN--LIQAFKSISAMSDRLG 121
N L L+T+I+ ++ SL K+Q +S +N L A++ IS + +
Sbjct: 82 NSLYDTEDLTTMISY-APNSNSGSSKNSLNKIQQKSLVDKKNYALQTAYQKISELCNGYQ 140
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L + D A +YK V + + L+G+ Q++I+AA + + CR+ + PRT++E ++ N TK
Sbjct: 141 LPKSASDAAKHLYKAVREDRLLKGKTQDSIMAATILLGCRRADVPRTLEEIRALTNVPTK 200
Query: 182 ---KEIGRAKEFIVKHLEAE------MGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
K G K+ I HL + + ++ + T A D +RRFCS+LG++ A++
Sbjct: 201 QIAKVTGLIKKIIRSHLNNDDASTSIVDETSSLTTHSAEDLIRRFCSHLGLSLAITSASE 260
Query: 233 EAVQKSEDLDI 243
+K DL +
Sbjct: 261 YVARKCHDLGV 271
>gi|449017294|dbj|BAM80696.1| transcription initiation factor IIB [Cyanidioschyzon merolae strain
10D]
Length = 377
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/272 (33%), Positives = 138/272 (50%), Gaps = 32/272 (11%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T++V D GD +C++CG+V +D EWR F N+ S +DP RVGG +NP
Sbjct: 14 CGECGS-TDLVEDTKNGDLVCAQCGVVAAELLIDLGHEWRTFENDDSAYDPNRVGGSINP 72
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLV 123
LL GL+T I++ AG + L+ L + Q+R+ DR + + + IS + +R GL
Sbjct: 73 LLD-SGLATSISQGPAGANA--LNERLARAQSRNVLDANDRYVTECYNRISYLCERSGLP 129
Query: 124 TTIKDRANEIYKKVEDQKPL-------RGRNQE----AIVAACLYIACRQENKPRTVKEF 172
+KDRA E+ + D L R R +E +I++A L+IACR E PRT E
Sbjct: 130 QLVKDRACELLRLYYDHLTLGADGVRARARFREDETASIISAALFIACRNEGFPRTFNEI 189
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHAS-DYLRRFCSNL-------GMT 224
SV K + VK +E +G++ ++ I + D++ RFCS L +
Sbjct: 190 -SVIVSVAKSRVA----AYVKAMEMSIGEAAKISRIRTTDDFVSRFCSYLEIPNIVRSLV 244
Query: 225 NQAVKAAQE--AVQKSEDLDIRLILVFFSLFL 254
NQ +AA E + + I ++F L L
Sbjct: 245 NQVARAAAEKDGIHGRTLVSIAAGAIYFVLLL 276
>gi|351707652|gb|EHB10571.1| Transcription initiation factor IIB [Heterocephalus glaber]
Length = 234
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 91/141 (64%), Gaps = 7/141 (4%)
Query: 103 DRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQ 162
DR ++ AFK + M+DR+ L I DR N ++K+V +QK L+GR +AI +ACLYIACRQ
Sbjct: 29 DRAMMNAFKETTPMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQ 88
Query: 163 ENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLG 222
E PRT KE C+V+ +KKEIGR + I+K LE SV++ I D++ RFCSNL
Sbjct: 89 EGVPRTFKEICAVSR-ISKKEIGRCFKLILKALET----SVDL--ITTGDFMSRFCSNLC 141
Query: 223 MTNQAVKAAQEAVQKSEDLDI 243
+ Q AA +K+ +LD+
Sbjct: 142 LPKQVQMAATHIARKAVELDL 162
>gi|157833927|pdb|1TFB|A Chain A, Nmr Studies Of Human General Transcription Factor Tfiib:
Dynamics And Interaction With Vp16 Activation Domain, 20
Structures
Length = 208
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 91/140 (65%), Gaps = 7/140 (5%)
Query: 104 RNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQE 163
R ++ AFK I+ M+DR+ L I DR N ++K+V +QK L+GR +AI +ACLYIACRQE
Sbjct: 4 RAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQE 63
Query: 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGM 223
PRT KE C+V+ +KKEIGR + I+K LE SV++ I D++ RFCSNL +
Sbjct: 64 GVPRTFKEICAVSR-ISKKEIGRCFKLILKALET----SVDL--ITTGDFMSRFCSNLCL 116
Query: 224 TNQAVKAAQEAVQKSEDLDI 243
Q AA +K+ +LD+
Sbjct: 117 PKQVQMAATHIARKAVELDL 136
>gi|146387163|pdb|2PHG|A Chain A, Model For Vp16 Binding To Tfiib
Length = 206
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 91/140 (65%), Gaps = 7/140 (5%)
Query: 104 RNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQE 163
R ++ AFK I+ M+DR+ L I DR N ++K+V +QK L+GR +AI +ACLYIACRQE
Sbjct: 2 RAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQE 61
Query: 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGM 223
PRT KE C+V+ +KKEIGR + I+K LE SV++ I D++ RFCSNL +
Sbjct: 62 GVPRTFKEICAVSR-ISKKEIGRCFKLILKALET----SVDL--ITTGDFMSRFCSNLCL 114
Query: 224 TNQAVKAAQEAVQKSEDLDI 243
Q AA +K+ +LD+
Sbjct: 115 PKQVQMAATHIARKAVELDL 134
>gi|13541914|ref|NP_111602.1| transcription initiation factor IIB [Thermoplasma volcanium GSS1]
gi|21363020|sp|Q979Q3.1|TF2B1_THEVO RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|14325345|dbj|BAB60249.1| transcription initiation factor B [TFB] [Thermoplasma volcanium
GSS1]
Length = 312
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 128/248 (51%), Gaps = 19/248 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T ++ D+ G+ +C ECG V+E +D+ EWR F +E ++ R G P+
Sbjct: 16 CPECGS-TNLIRDYEHGELVCGECGAVIEDSYIDQGPEWRAFDSEQNESR-ARAGSPMTF 73
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSISA 115
+ GLST I+ K + G S + + L K Q R S+ +RNL QA + +
Sbjct: 74 TIHDKGLSTDISWKNKDSYGRSIPTRNRAQLYRLRKWQKRIKVSNAAERNLSQALQELER 133
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ L + +++ A IY+K Q +RGR+ E +VA LY ACR N PRT+ E SV
Sbjct: 134 MAFNLSIPNDVRETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRITNVPRTLGEIASV 193
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
KKEIGR + ++L+ + S A DY+ RFCS L ++ A E +
Sbjct: 194 TR-VKKKEIGRTYRIMSRYLKLNIMPS------KAEDYISRFCSKLKLSMDTRNKALEIL 246
Query: 236 QKSEDLDI 243
+ +E++ +
Sbjct: 247 RDAENVGL 254
>gi|366996677|ref|XP_003678101.1| hypothetical protein NCAS_0I00880 [Naumovozyma castellii CBS 4309]
gi|342303972|emb|CCC71756.1| hypothetical protein NCAS_0I00880 [Naumovozyma castellii CBS 4309]
Length = 370
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/273 (31%), Positives = 138/273 (50%), Gaps = 22/273 (8%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK ++V S GD +C+ CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 39 CPECKVYPPKIVERFSEGDVVCALCGLVLSDRLVDTRSEWRTFSNDDQNGDDPSRVGEAS 98
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL G LST I + G+ + L + Q ++ D + AF I+ + D
Sbjct: 99 NPLLDGNNLSTRIGQ--GEGTDMRFTKELNRAQGKNVVDKKDNEVQAAFAKITMLCDAAE 156
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +KD A E YK D++ L+G++ E+I+AA + I CR+ RT KE S+ + T
Sbjct: 157 LPKIVKDCAKEAYKLCHDERSLKGKSTESIMAASILIGCRRAEVARTFKEIQSIIHVKT- 215
Query: 182 KEIGRAKEFIVKHLEAEMGQS-VEMGTIHAS-----DYLRRFCSNLGMTNQAVKAAQEAV 235
KE G+ + L + +++ T + S Y+ RFCS+LG+ Q AA+
Sbjct: 216 KEFGKTLGIMKGILREKSSDGFIKINTDNMSGAQNLTYIPRFCSHLGLPMQVTTAAEYTA 275
Query: 236 QKSEDLD---------IRLILVFFSLFLVETHI 259
+K ++++ I ++ ++ ++ L + +
Sbjct: 276 KKCKEIEEIAGKSPITIAVVSIYLNILLFKIPV 308
>gi|448316712|ref|ZP_21506293.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
gi|445607127|gb|ELY61021.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
Length = 318
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 115/224 (51%), Gaps = 18/224 (8%)
Query: 22 GDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTA 81
G+ +C ECGLV+E ++D EWR F N S + RVG P + GL+T I
Sbjct: 40 GELVCEECGLVIETRNIDRGPEWRAF-NHSERNSKSRVGAPTTKTMHDKGLTTQIDWKDK 98
Query: 82 GGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRAN 131
LS L K Q R D RNL A I M+ LG+ ++++ A+
Sbjct: 99 DAYGRSLSSEKRNQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 158
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
+Y++ ++ +RGR+ E + +CLY+ACRQE+ PR+++E V+ KKEIGR +I
Sbjct: 159 VVYRRALNEDLIRGRSIEGVSTSCLYVACRQESIPRSLEEVADVSR-VEKKEIGRTYRYI 217
Query: 192 VKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ L S+EM + +Y+ RFCS L + + A+E +
Sbjct: 218 AQEL------SLEMKPVDPKEYVPRFCSALDSSEEVQAKAREII 255
>gi|432328340|ref|YP_007246484.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
gi|432135049|gb|AGB04318.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
Length = 313
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 131/248 (52%), Gaps = 19/248 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T +++D+ G+ +C +CG V+E +D+ EWR F E D R G PL
Sbjct: 17 CPECGS-THLIWDYERGELVCGDCGAVIEDSFIDQGPEWRAFDAEQ-DEKRARTGAPLTF 74
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFKSISA 115
L GL+T I+ + + + K R S+ +RNL A + ++
Sbjct: 75 LSHDKGLATEISWSNKDSYGKRIPHKNRAQIYRVRKWHQRIRVSNAAERNLSVALQELNN 134
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
+S ++GL +++ A IY+K ++ +RGR+ E+IVAA +Y ACR+ PRT+ E
Sbjct: 135 VSSKMGLPKDVRETAAIIYRKAVEKNLIRGRSIESIVAASIYAACRKVGMPRTLDEVAK- 193
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
A+ KK+IGRA +HL E+ +++ T A+ Y+ +FCS L + V A+E V
Sbjct: 194 ASELNKKKIGRA----YRHLTKELNLNLKPTT--ANSYITQFCSKLRLDKNVVNKAEEIV 247
Query: 236 QKSEDLDI 243
QK+ D+ I
Sbjct: 248 QKATDVGI 255
>gi|125558451|gb|EAZ03987.1| hypothetical protein OsI_26125 [Oryza sativa Indica Group]
Length = 354
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/294 (31%), Positives = 136/294 (46%), Gaps = 61/294 (20%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVL------EAYSVDETSEWRIFANESSDHDPVR 58
YC C+R T +V DH GD IC+EC +VL +V + A+ +D DP+
Sbjct: 10 YCQQCERTTSMVLDHDTGDAICTECAIVLGNGNDPRRPAVASAATKHGGADAPADDDPLL 69
Query: 59 VGG---------------PLNPLLSGGGL-------STVIAKPTAGGSTELLSGSLGKLQ 96
G P G V+A GG ++ +
Sbjct: 70 QGSDVVAAAAAEVACSVAPTKLQAEGAAPAAPPRMRGAVVAPKVRGGGGGAVT------K 123
Query: 97 ARSSHPDRN--LIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKP-LRGRNQEAIVA 153
AR PD N L + F +I M+ RLGL ++DR ++ +KVE+ K RGR+++A+ A
Sbjct: 124 ARGGVPDTNKSLAEGFDAIDNMASRLGLAGNVRDRGKDVLRKVEEAKVCARGRSRDALYA 183
Query: 154 ACLYIACRQENKPRTVKEFCSVAN--GTTKKEIGRAKEFIVKHL-----EAEMGQSVEMG 206
ACL+ ACR E PRT+KE + TK+++G+ I + L EAE GQ + G
Sbjct: 184 ACLHTACRMEGAPRTLKELIAATPDAAATKRDLGKFIHAIKRLLGSNDEEAEAGQD-QAG 242
Query: 207 T---------------IHASDYLRRFCSNLGMTNQAVKAAQEAVQK-SEDLDIR 244
+ + AS+YL R+ S +GM+ Q V AAQ A + E LD+R
Sbjct: 243 SKATNGCGGGGGAGAVVRASNYLLRYGSAVGMSGQEVSAAQRAASRLDESLDVR 296
>gi|365982759|ref|XP_003668213.1| hypothetical protein NDAI_0A08160 [Naumovozyma dairenensis CBS 421]
gi|343766979|emb|CCD22970.1| hypothetical protein NDAI_0A08160 [Naumovozyma dairenensis CBS 421]
Length = 400
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 85/273 (31%), Positives = 138/273 (50%), Gaps = 22/273 (8%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK ++V S GD +C+ CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 39 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDQNGDDPSRVGEAS 98
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL G LST I + G+ + L + Q ++ D + AF ++ + D
Sbjct: 99 NPLLDGNNLSTRIGQ--GEGTDMRFTKELNRAQGKNIVDKKDNEVQAAFAKMTMLCDAAE 156
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +KD A E YK D+K L+G++ E+I+AA + I CR+ RT KE S+ + T
Sbjct: 157 LPKIVKDCAKEAYKLCHDEKSLKGKSSESIMAASILIGCRRAEVARTFKEIQSIIHVKT- 215
Query: 182 KEIGRAKEFIVKHLEAEMGQS-VEMGTIHAS-----DYLRRFCSNLGMTNQAVKAAQEAV 235
KE G+ + L + +++ T + S Y+ RFCS+LG+ Q AA+
Sbjct: 216 KEFGKTLGIMKGILREKSSDGFIKINTDNMSGAQNLTYIPRFCSHLGLPMQVTTAAEYTA 275
Query: 236 QKSEDLD---------IRLILVFFSLFLVETHI 259
+K ++++ I ++ ++ ++ L + +
Sbjct: 276 KKCKEIEEIAGKSPITIAVVSIYLNILLFKIPV 308
>gi|410720379|ref|ZP_11359735.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanobacterium sp. Maddingley
MBC34]
gi|410601161|gb|EKQ55681.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanobacterium sp. Maddingley
MBC34]
Length = 340
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 128/246 (52%), Gaps = 19/246 (7%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
++ C +C+ +++ DH G+ +C CGLV++ VD EWR F +E D RVG P
Sbjct: 41 ETKCPECQS-EKLINDHERGEIVCGSCGLVIDDNLVDMGPEWRAFDHEQRDKR-TRVGAP 98
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKS 112
+ + GLST+I K G + + L K Q + S +RNL A
Sbjct: 99 ITYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSE 158
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
+ S RLGL ++++ A+ +Y+ + K +RGR+ E +VAA LY ACR+ N PRT+ E
Sbjct: 159 LDRDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEI 218
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ +KKE+GR F+ + L ++++ DY+ RF S L ++ + A
Sbjct: 219 AEVSR-VSKKEVGRTYRFLTREL------NIKLPPTSPVDYVPRFASELNLSGEVQSKAI 271
Query: 233 EAVQKS 238
E ++K+
Sbjct: 272 EIIEKA 277
>gi|324528353|gb|ADY48903.1| Transcription initiation factor IIB, partial [Ascaris suum]
Length = 181
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 99/173 (57%), Gaps = 5/173 (2%)
Query: 44 WRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS-SHP 102
WR F+ E S DP RVG P NPLL LST IA GS+E SL Q R+ +
Sbjct: 1 WRSFSGEKSGIDPSRVGAPENPLLGSSDLSTSIA--VYYGSSEC-DQSLASAQRRTLNGV 57
Query: 103 DRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQ 162
DR + +A I MS R+ L +I+D A ++++ V D + L G+N EA AACLYIACR+
Sbjct: 58 DRQMTEALGVIREMSARMQLPKSIEDSAAKVFRDVVDTRALVGKNNEAKAAACLYIACRK 117
Query: 163 ENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLR 215
E PRT KE C+V+ +KKEIGR + ++ LE + Q + S++ R
Sbjct: 118 EGVPRTFKEVCAVSR-VSKKEIGRCFKLAIRSLETNLEQITSADFMEESNFDR 169
>gi|320589326|gb|EFX01788.1| transcription initiation protein [Grosmannia clavigera kw1407]
Length = 343
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/236 (33%), Positives = 117/236 (49%), Gaps = 20/236 (8%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS-DHDPVRVGGPL 63
C DCK +V + S+GD +C CGLV+ +D SEWR FAN+ + DP RVG
Sbjct: 22 CPDCKEYPPNLVEEFSSGDMVCDSCGLVVGPRIIDSRSEWRTFANDDQGNDDPSRVGESA 81
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRN--LIQAFKSISAMSDRLG 121
N L + GL T + A G L+G L + +S N L + +++IS + D +
Sbjct: 82 NALANDEGLRTQVDMRAANGR---LAGKLNSINKKSQSEKLNSDLQEGYRAISTLVDMMQ 138
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
+ A+ IYK + L+G+ +EA++A C++IACRQ PRT +E ++ TK
Sbjct: 139 TAPIVNTTASHIYKLAYENGQLKGKPREAVIAGCIFIACRQCGVPRTFREIYAITR-VTK 197
Query: 182 KEIGRA----KEFIVKHLEAEMGQSVEMG--------TIHASDYLRRFCSNLGMTN 225
KEIGR + F+ K E S G + A + R+CS LG N
Sbjct: 198 KEIGRVFKSLESFLSKIQERNPQASAAQGVKDYKASSSTSAEELCTRYCSLLGFRN 253
>gi|254577986|ref|XP_002494979.1| ZYRO0B00528p [Zygosaccharomyces rouxii]
gi|238937869|emb|CAR26046.1| ZYRO0B00528p [Zygosaccharomyces rouxii]
Length = 357
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 136/273 (49%), Gaps = 22/273 (8%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK ++V S GD +C+ CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 26 CPECKVYPPKIVERFSEGDVVCALCGLVLSDRLVDTRSEWRTFSNDDQNGDDPSRVGEAS 85
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL G LST I +A GS + L + Q ++ D L F ++ + D
Sbjct: 86 NPLLDGNSLSTRIG--SAEGSDARTTRDLNRAQGKNVMDKKDNELQAVFAKLTMLCDAAE 143
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +KD A E YK D+K L+G++ E+I+A+ + I CR+ RT++E S+ + T
Sbjct: 144 LPKIVKDCAKEAYKLCYDEKALKGKSTESIMASAILIGCRRAEVARTLREIQSIIHVKT- 202
Query: 182 KEIGRAKEFIVKHLEAEMGQSV------EMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
KE G++ + L + + M Y+ RFCS+LG+ Q A++
Sbjct: 203 KEFGKSLGIMKGILREKSSDGIIKIDTNNMSGAQNLPYIPRFCSHLGLPMQVTTASEYTA 262
Query: 236 QKSEDLD---------IRLILVFFSLFLVETHI 259
+K ++++ I ++ ++ ++ L + +
Sbjct: 263 RKCKEIEEIAGKSPITIAVVSIYLNILLFKLPV 295
>gi|333986561|ref|YP_004519168.1| Transcription initiation factor IIB [Methanobacterium sp. SWAN-1]
gi|333824705|gb|AEG17367.1| Transcription initiation factor IIB [Methanobacterium sp. SWAN-1]
Length = 340
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 128/246 (52%), Gaps = 19/246 (7%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
++ C +C +++ DH G+ +C CGLV++ VD EWR F +E D RVG P
Sbjct: 41 ETKCPECGS-KKLINDHERGEVVCGACGLVIDDNLVDMGPEWRAFDHEQRDKR-TRVGAP 98
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKS 112
+ + GLST+I K G + + L K Q + S +RNL A
Sbjct: 99 ITYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSE 158
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
+ S RLGL ++++ A+ +Y+ + K +RGR+ E +VAA LY ACR+ N PRT+ E
Sbjct: 159 LDRDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEI 218
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ TKKE+GR F+ + L ++++ DY+ RF S LG++ + A
Sbjct: 219 AEVSR-VTKKEVGRTYRFLTREL------NIKLPPTSPVDYVPRFASELGLSGEVQSKAI 271
Query: 233 EAVQKS 238
+ ++++
Sbjct: 272 DIIEQA 277
>gi|34394691|dbj|BAC83997.1| putative Transcription initiation factor IIB [Oryza sativa Japonica
Group]
Length = 354
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 93/294 (31%), Positives = 135/294 (45%), Gaps = 61/294 (20%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVL------EAYSVDETSEWRIFANESSDHDPVR 58
YC C+R T +V DH GD IC+EC +VL +V + A+ +D DP+
Sbjct: 10 YCQQCERTTSMVLDHDTGDAICTECAIVLGNGNDPRRPAVASAATKHGGADAPADDDPLL 69
Query: 59 VGG---------------PLNPLLSGGGL-------STVIAKPTAGGSTELLSGSLGKLQ 96
G P G V+A GG ++ +
Sbjct: 70 QGSDVVAAAAAEVACSVAPTKLQAEGAAPAAPPRMRGAVVAPKVRGGGGGAVT------K 123
Query: 97 ARSSHPDRN--LIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKP-LRGRNQEAIVA 153
AR PD N L + F +I M+ RLGL ++DR ++ +KVE+ K RGR+++A+ A
Sbjct: 124 ARGGVPDTNKSLAEGFDAIDNMASRLGLAGNVRDRGKDVLRKVEEAKVCARGRSRDALYA 183
Query: 154 ACLYIACRQENKPRTVKEFCSVAN--GTTKKEIGRAKEFIVKHL-----EAEMGQSVEMG 206
ACL+ ACR E PRT+KE + TK+ +G+ I + L EAE GQ + G
Sbjct: 184 ACLHTACRMEGAPRTLKELIAATPDAAATKRNLGKFIHAIKRLLGSNDEEAEAGQD-QAG 242
Query: 207 T---------------IHASDYLRRFCSNLGMTNQAVKAAQEAVQK-SEDLDIR 244
+ + AS+YL R+ S +GM+ Q V AAQ A + E LD+R
Sbjct: 243 SKATNGCGGGGGAGAVVRASNYLLRYGSAVGMSGQEVSAAQRAASRLDESLDVR 296
>gi|444317851|ref|XP_004179583.1| hypothetical protein TBLA_0C02540 [Tetrapisispora blattae CBS 6284]
gi|387512624|emb|CCH60064.1| hypothetical protein TBLA_0C02540 [Tetrapisispora blattae CBS 6284]
Length = 357
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 124/247 (50%), Gaps = 15/247 (6%)
Query: 6 CADCKRLTEVVFDH-SAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK + + S GD +C+ CGLVL +D SEWR F+N+ + DP RVG
Sbjct: 28 CPECKVYPPKIIERFSEGDVVCALCGLVLSDKLIDTRSEWRTFSNDDQNGDDPSRVGEAS 87
Query: 64 NPLLSGGGLSTVIAKPTAGGSTE-LLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRL 120
NPLL G LST I + G +T+ + L + Q ++ D + AF I+ + D
Sbjct: 88 NPLLDGNNLSTRIGQ---GETTDSRFTKELNRAQGKNIVDKKDNEVQSAFAKITMLCDAA 144
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
L +KD A E YK D+K L+G++ E+++AA + I CR+ RT KE S+ + T
Sbjct: 145 ELPKIVKDCAKEAYKLCNDEKSLKGKSTESVMAASILIGCRRAQVARTFKEIQSIIHVKT 204
Query: 181 KKEIGRAKEFIVKHLEAEMGQSV------EMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
KE G+ + L + V M Y+ RFCS+LG+ Q +A+
Sbjct: 205 -KEFGKTLGIMKGILREKSADGVIKIDTDNMSGAQNVTYIPRFCSHLGLPMQVTTSAEYT 263
Query: 235 VQKSEDL 241
+K +++
Sbjct: 264 AKKCKEI 270
>gi|410084090|ref|XP_003959622.1| hypothetical protein KAFR_0K01330 [Kazachstania africana CBS 2517]
gi|372466214|emb|CCF60487.1| hypothetical protein KAFR_0K01330 [Kazachstania africana CBS 2517]
Length = 355
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 138/273 (50%), Gaps = 22/273 (8%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +C+ ++V S GD +C+ CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 24 CPECRVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDQNGDDPSRVGEAS 83
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL G LST I + G+ + L + Q ++ D + AF I+ + D
Sbjct: 84 NPLLDGNNLSTRIGQ--GEGTDMRFTKELNRAQGKNVVDKKDNEVQAAFAKITMLCDAAE 141
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +KD A E YK D+K L+G++ E+I+AA + I CR+ RT KE S+ + T
Sbjct: 142 LPKIVKDCAKEAYKLCHDEKSLKGKSTESIMAASILIGCRRAQVARTFKEIQSIIHVKT- 200
Query: 182 KEIGRAKEFIVKHLEAEMGQS-VEMGTIHAS-----DYLRRFCSNLGMTNQAVKAAQEAV 235
KE G+ + L + +++ T + S Y+ RFCS+LG+ Q A++
Sbjct: 201 KEFGKTLGIMKGILREKSSDGFIKINTDNMSGAQNLTYIPRFCSHLGLPMQVTTASEYTA 260
Query: 236 QKSEDLD---------IRLILVFFSLFLVETHI 259
+K ++++ I ++ ++ ++ L + +
Sbjct: 261 KKCKEIEEIAGKSPITIAVVSIYLNILLFKIPV 293
>gi|336254888|ref|YP_004597995.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338877|gb|AEH38116.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 323
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 118/245 (48%), Gaps = 19/245 (7%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGG 61
A+ C +C + +V + +C +CGLV+E ++D EWR F N S RVG
Sbjct: 26 AERVCPECNSDS-LVRSEDQRELVCDDCGLVVEESNIDRGPEWRAF-NHSERQSKSRVGA 83
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFK 111
P + GL+T I LS L K Q R D RNL A
Sbjct: 84 PTTQAMHDKGLTTQIDWKNTDAYGRSLSADKRSQMRRLRKWQERIRTKDAGERNLQSALS 143
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
I MS LG+ ++++ A+ +Y++ + +RGR+ E + CLY ACRQE PR+++E
Sbjct: 144 EIDRMSSALGIPRSVREVASVVYRRALSEDLIRGRSIEGVATGCLYAACRQEGIPRSLEE 203
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
V+ +KEIGR ++ + L S+E+ + +Y+ RFCS L ++ +
Sbjct: 204 VAEVSR-VERKEIGRTYRYVAQEL------SLELKPVDPQEYVPRFCSELDLSEEVTAKT 256
Query: 232 QEAVQ 236
+E +Q
Sbjct: 257 REIIQ 261
>gi|257388456|ref|YP_003178229.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257170763|gb|ACV48522.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 324
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 128/252 (50%), Gaps = 28/252 (11%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGG 61
+S C +C T++ +H G+T+C ECGLV+E +D EWR F ++S+ D RVG
Sbjct: 28 ESLCPECGGHTQLDAEH--GETVCEECGLVVEEDEIDHGPEWRAF--DASERDSKSRVGA 83
Query: 62 PLNPLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQ 108
P ++ GLST I K G S L S K+Q R S +RNL Q
Sbjct: 84 PTTKMMHDKGLSTNIGWQDKDAYGNS--LSSSQRQKMQRLRTWNERFRTRDSK-ERNLKQ 140
Query: 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT 168
A I M+ LGL +++ A+ IY++ D+ L GR+ E + + LY A RQ N PR+
Sbjct: 141 ALGEIDRMASALGLPKNVRETASVIYRRALDEDLLPGRSIEGVATSALYAAARQANNPRS 200
Query: 169 VKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAV 228
+ E V+ + E+ R +I++ L +E+ Y+ RFCS L ++++
Sbjct: 201 LDEMTHVSR-VERMELTRTYRYIIREL------GLEVAPAKPESYVPRFCSELSLSDETE 253
Query: 229 KAAQEAVQKSED 240
+ A+E ++ + D
Sbjct: 254 RRARELIEAARD 265
>gi|408382816|ref|ZP_11180358.1| transcription initiation factor IIB [Methanobacterium formicicum
DSM 3637]
gi|407814618|gb|EKF85243.1| transcription initiation factor IIB [Methanobacterium formicicum
DSM 3637]
Length = 307
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 127/246 (51%), Gaps = 19/246 (7%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
++ C +C +++ DH G+ +C CGLV++ VD EWR F +E D RVG P
Sbjct: 8 ETKCPECGS-EKLINDHERGEIVCGACGLVIDDNLVDMGPEWRAFDHEQRDKR-TRVGAP 65
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKS 112
+ + GLST+I K G + + L K Q + S +RNL A
Sbjct: 66 ITYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSE 125
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
+ S RLGL ++++ A+ +Y+ + K +RGR+ E +VAA LY ACR+ N PRT+ E
Sbjct: 126 LDRDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEI 185
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ +KKE+GR F+ + L ++++ DY+ RF S L ++ + A
Sbjct: 186 AEVSR-VSKKEVGRTYRFLTREL------NIKLPPTSPVDYVPRFASELNLSGEVQSKAI 238
Query: 233 EAVQKS 238
E ++K+
Sbjct: 239 EIIEKA 244
>gi|325960055|ref|YP_004291521.1| transcription initiation factor iiB [Methanobacterium sp. AL-21]
gi|325331487|gb|ADZ10549.1| Transcription initiation factor IIB [Methanobacterium sp. AL-21]
Length = 331
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 127/246 (51%), Gaps = 19/246 (7%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
++ C +C +++ DH G+ +C CGLV++ VD EWR F +E D RVG P
Sbjct: 32 ETKCPECGS-EKLINDHERGEVVCGACGLVIDDNIVDMGPEWRAFDHEQRDKR-TRVGAP 89
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKS 112
+ + GLST+I K G + + L K Q + S +RNL A
Sbjct: 90 ITYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSE 149
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
+ S RLGL ++++ A+ +Y+ + K +RGR+ E +VAA LY ACR+ N PRT+ E
Sbjct: 150 LDRDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEI 209
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ +KKE+GR F+ + L ++++ DY+ RF S L ++ + A
Sbjct: 210 AEVSR-VSKKEVGRTYRFLTREL------NIKLPPTSPVDYVPRFASELNLSGEVQSKAI 262
Query: 233 EAVQKS 238
E ++K+
Sbjct: 263 EIIEKA 268
>gi|15920551|ref|NP_376220.1| transcription initiation factor IIB [Sulfolobus tokodaii str. 7]
gi|21363017|sp|Q975S1.1|TF2B_SULTO RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|15621334|dbj|BAB65329.1| transcription initiation factor IIB 1 [Sulfolobus tokodaii str. 7]
Length = 308
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 124/237 (52%), Gaps = 18/237 (7%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
++VFD G+ IC+E G V+E ++D+ EWR F E + RVGGPLN + G+S
Sbjct: 18 KIVFDEERGEYICTETGEVIEERAIDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDMGIS 76
Query: 74 TVI--AKPTAGGST-------ELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLV 123
TVI A G T E+L +++AR S DRNL QA + + + L L
Sbjct: 77 TVIDWKDKDAMGRTLDPKRRLEVLRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLP 136
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+KD A IY+K ++ +RGR+ E++VAA +Y ACR+ RT+ E +KE
Sbjct: 137 KAVKDEAALIYRKAVEKGLVRGRSIESVVAASIYAACRRMKMARTLDEIAQFTKA-NRKE 195
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
+ R I++ L+ + + DY+ R S LG++ +K A + ++K+++
Sbjct: 196 VARCYRLILRELD------INVPVSDPKDYVTRIGSLLGLSGSTMKMAIDIIEKAKE 246
>gi|305663777|ref|YP_003860065.1| Transcription initiation factor IIB (TFIIB) [Ignisphaera aggregans
DSM 17230]
gi|304378346|gb|ADM28185.1| Transcription initiation factor IIB (TFIIB) [Ignisphaera aggregans
DSM 17230]
Length = 315
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 126/240 (52%), Gaps = 20/240 (8%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V+D G+ IC++ G V+ + +D EWR F E + R G P+N L GLST
Sbjct: 22 IVYDEVRGEWICADSGEVIAEHVIDRGPEWRAFTAEERERRS-RAGAPINIALHDSGLST 80
Query: 75 VIA---KPTAGGSTELLSGSLGKLQARSSHP--------DRNLIQAFKSISAMSDRLGLV 123
VI + +AG +L L ++ R H DRN++QA + ++D+L L
Sbjct: 81 VIDWYDRDSAGRRLDL-KRRLELIRIRKWHSRTRIQSTIDRNIVQAMNELERIADQLNLP 139
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
I + A IY++ +++ +RGR E++VAA LY ACR PRT+ E S + +KE
Sbjct: 140 RVIVEEATMIYRRAVERELVRGRAIESMVAAALYAACRIHGIPRTLDEI-SKYTKSGRKE 198
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
+ R +V+ L S+ + + A++Y +R S LG++ VK A + ++++ D+ +
Sbjct: 199 VARCYRLLVREL------SLRIPIVDAAEYAQRIASMLGLSGATVKTAIDIIRRARDMGV 252
>gi|254580795|ref|XP_002496383.1| ZYRO0C17116p [Zygosaccharomyces rouxii]
gi|238939274|emb|CAR27450.1| ZYRO0C17116p [Zygosaccharomyces rouxii]
Length = 346
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 141/268 (52%), Gaps = 22/268 (8%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK ++V S GD +C+ CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 23 CPECKVYPPKIVERFSEGDCVCALCGLVLSDRLVDTRSEWRTFSNDDQNGDDPSRVGEAA 82
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDR-NLIQA-FKSISAMSDRLG 121
NPLL G LST I + G + + L + Q+++ + N IQA F I+ + D
Sbjct: 83 NPLLDGNSLSTRIGQGEGGDARA--TRDLNRAQSKNVLDKKDNEIQAIFIKITMLCDVAE 140
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +KD A EIYK D + L+G++ E+++AA + + CR+ RT+ E S+ + +
Sbjct: 141 LPKIVKDSAKEIYKLCYDSRALKGKSMESVIAAAILLGCRRAKVARTLTEVQSMIH-VRR 199
Query: 182 KEIGRAKEF---IVKHLEAEMGQSVEMGTIHAS---DYLRRFCSNLGMTNQAVKAAQEAV 235
KE ++ + I+ A+ ++ G ++ + Y+ RFCS+LG+ Q A++
Sbjct: 200 KEFSKSLKLMSSILMEKSADGIIKIDRGDMNGATNLSYIPRFCSHLGLPMQLTTASEYTA 259
Query: 236 QKSEDLD---------IRLILVFFSLFL 254
K ++++ I ++ +FF++ L
Sbjct: 260 GKCKEIEEIAGKSPITIAVVAIFFNVLL 287
>gi|76803221|ref|YP_331316.1| transcription initiation factor TFB 8 [Natronomonas pharaonis DSM
2160]
gi|76559086|emb|CAI50684.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 325
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 119/241 (49%), Gaps = 19/241 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T++V D G+ +C++CGLV+E +D EWR F N S + RVG P
Sbjct: 31 CPECSS-TDIVKDGDRGELVCNDCGLVVEEDHIDPGPEWRAF-NHSERQEKSRVGAPTTQ 88
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I +S L K Q R D RNL A I
Sbjct: 89 TMHDKGLTTQIDWKDQDAYGRSISSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 148
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
MS LG+ +I++ A+ IY++ D +RGR+ E + A LY ACR+E PR+++E V
Sbjct: 149 MSSALGVPRSIREVASVIYRRALDDDLIRGRSIEGVATAALYAACRKEGIPRSLEEISEV 208
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +EM + Y+ RFCS L ++ + A++ +
Sbjct: 209 SR-VERKEIGRTYRYISQEL------GLEMEPVDPQKYVPRFCSELELSEEVQSKAKDII 261
Query: 236 Q 236
+
Sbjct: 262 E 262
>gi|367012261|ref|XP_003680631.1| hypothetical protein TDEL_0C05310 [Torulaspora delbrueckii]
gi|359748290|emb|CCE91420.1| hypothetical protein TDEL_0C05310 [Torulaspora delbrueckii]
Length = 356
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 138/272 (50%), Gaps = 20/272 (7%)
Query: 6 CADCKRLTEVVFDH-SAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK V + S GD +C+ CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 26 CPECKVYPPKVAERFSEGDIVCALCGLVLSDKLVDTRSEWRTFSNDDQNGDDPSRVGEAS 85
Query: 64 NPLLSGGGLSTVIAKPTAGG--STELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLG 121
NPLL G LST I + G +T L+ + GK D L F I+ + D
Sbjct: 86 NPLLDGNSLSTRIGQGEGGDLRATRDLNRAQGK--NVMDKKDNELQGVFAKITMLCDAAE 143
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +KD A E YK D+K L+G++ E+I+AA +++ CR+ + RT KE S+ + TK
Sbjct: 144 LPKIVKDCAKEAYKLCHDEKALKGKSTESIMAAAIFVGCRRADVARTFKEIQSIIHVKTK 203
Query: 182 K--EIGRAKEFIVKHLEAEMGQSVEMGTIHASD---YLRRFCSNLGMTNQAVKAAQEAVQ 236
+ + + I++ A+ ++ + + Y+ RFCS+LG+ Q AA+ +
Sbjct: 204 EFFKTLSIMKGILREKSADGFIKIDTDNMSGAQNLTYIPRFCSHLGLPMQLTTAAEYTAK 263
Query: 237 KSEDLD---------IRLILVFFSLFLVETHI 259
K ++++ I ++ ++ ++ L + +
Sbjct: 264 KCKEIEEIAGKSPITIAVVSIYLNILLFKLPV 295
>gi|332796366|ref|YP_004457866.1| transcription initiation factor TFIIB [Acidianus hospitalis W1]
gi|332694101|gb|AEE93568.1| transcription initiation factor TFIIB [Acidianus hospitalis W1]
Length = 304
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 129/248 (52%), Gaps = 22/248 (8%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D+ C K +VFD G+ IC+E G V+E +D+ EWR F E + RVGGP
Sbjct: 7 DNICPPDK----IVFDADRGEYICTETGEVIEERIIDQGPEWRAFTPEEKEKRS-RVGGP 61
Query: 63 LNPLLSGGGLSTVIA---KPTAGGST------ELLSGSLGKLQAR-SSHPDRNLIQAFKS 112
LN + GLST+I K G + E+L +++AR S DRNL QA
Sbjct: 62 LNQTIHDRGLSTLIDWKDKDAIGRNLDPKRRLEVLRWRKWQIRARIQSSIDRNLAQAMNE 121
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
+ + + LGL ++KD A IY+K ++ +RGR+ E++VAA +Y +CR+ RT+ E
Sbjct: 122 LERIGNLLGLPKSVKDEAALIYRKAVEKGLVRGRSIESVVAASIYASCRRIKIARTLDEI 181
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
+KE+ R +++ L +VE+ DY+ R S LG++ +K A
Sbjct: 182 AQYTKA-NRKEVARCYRLLLREL------NVEVPVSDPKDYVTRIGSLLGLSGATMKLAA 234
Query: 233 EAVQKSED 240
E ++K+++
Sbjct: 235 EILEKAKN 242
>gi|146304955|ref|YP_001192271.1| transcription initiation factor IIB [Metallosphaera sedula DSM
5348]
gi|145703205|gb|ABP96347.1| Transcription initiation factor IIB (TFIIB) [Metallosphaera sedula
DSM 5348]
Length = 305
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 131/250 (52%), Gaps = 22/250 (8%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGG 61
+D+ C K ++FD G+ ICSE G V+E VD+ EWR F E + RVGG
Sbjct: 7 SDTQCPPDK----IIFDADRGEYICSETGEVIEERIVDQGPEWRAFTPEEKEKRS-RVGG 61
Query: 62 PLNPLLSGGGLSTVIA---KPTAGGST------ELLSGSLGKLQAR-SSHPDRNLIQAFK 111
PLN + GLST+I K G + E+L +++AR S DRNL QA
Sbjct: 62 PLNQTIHDRGLSTLIDWKDKDAIGRNLDPKRRLEVLRWRKWQIRARIQSSIDRNLAQAMN 121
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
+ + + LGL ++KD IY+K ++ +RGR+ E++VAA +Y +CR+ RT+ E
Sbjct: 122 ELERIGNLLGLPKSVKDEGALIYRKAVEKGLVRGRSIESVVAAAIYASCRRMKIARTLDE 181
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
+KE+ R +++ L +V++ DY+ R S LG++ ++K A
Sbjct: 182 IAQYTKA-NRKEVARCYRLLLREL------NVDVPVSDPKDYVTRIGSLLGLSGASMKLA 234
Query: 232 QEAVQKSEDL 241
E ++K++++
Sbjct: 235 AEILEKAKNV 244
>gi|1729909|sp|P50387.1|TF2B_SULSH RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|836952|gb|AAA81380.1| transcription factor TFIIB homolog [Sulfolobus shibatae]
Length = 309
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 122/236 (51%), Gaps = 18/236 (7%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
+++FD G+ ICSE G VLE +D+ EWR F E + RVGGPLN + GLS
Sbjct: 19 KIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKEKRS-RVGGPLNNTIHDRGLS 77
Query: 74 TVI--AKPTAGGST-------ELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLV 123
T+I A G T E L +++AR S DRNL QA + + + L L
Sbjct: 78 TLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLP 137
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
++KD A IY+K ++ +RGR+ E++VAA +Y ACR+ RT+ E +KE
Sbjct: 138 KSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLDEIAQYTKA-NRKE 196
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSE 239
+ R +++ L+ V + DY+ R + LG++ + +K A E + K++
Sbjct: 197 VARCYRLLLRELD------VSVPVSDPKDYVTRIANLLGLSGRVMKTAAEIIDKAK 246
>gi|409095301|ref|ZP_11215325.1| transcription initiation factor IIB [Thermococcus zilligii AN1]
Length = 300
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 122/230 (53%), Gaps = 12/230 (5%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
E ++D S G+ +C++CG V+E VDE EWR F + RVG P + LL GLS
Sbjct: 14 EFIYDPSRGEIVCAKCGYVVEENVVDEGPEWRAF-DPGQREKRARVGAPESILLHDKGLS 72
Query: 74 TVIA--KPTAGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKD 128
T I + G E + L K Q+R S +RNL A + ++ L L +++
Sbjct: 73 TDIGIDRSVTGLMREKMY-RLRKWQSRLRVSDAAERNLAFALSELDRLASHLALPRHVEE 131
Query: 129 RANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAK 188
A +Y++ + +RGR+ E+++AAC+Y ACR PRT+ E V+ KKEIGR+
Sbjct: 132 EAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIAEVSK-VDKKEIGRSF 190
Query: 189 EFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKS 238
FI +HL + + + SDY+ +F LG++ + K A E ++++
Sbjct: 191 RFIARHL----NLTPKKLFVKPSDYVNKFADELGLSEKVRKRAIELLEEA 236
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LGL ++ RA E+ ++ ++ G++ +VAA LYIA
Sbjct: 201 PKKLFVKPSDYVNKFADELGLSEKVRKRAIELLEEAYNRGLTSGKSPAGLVAAALYIAGL 260
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E + RT +E VA T R KE + K
Sbjct: 261 MEEERRTQREVAEVARVTEVTVRNRYKELVEK 292
>gi|336373760|gb|EGO02098.1| hypothetical protein SERLA73DRAFT_177837 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386576|gb|EGO27722.1| hypothetical protein SERLADRAFT_461642 [Serpula lacrymans var.
lacrymans S7.9]
Length = 347
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 122/223 (54%), Gaps = 9/223 (4%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C +C+ +V + +GD +C CGLVL VD SEWR FAN+ D DP RVG +
Sbjct: 31 CPECRDPNPNIVEEFGSGDLVCGSCGLVLGDRIVDTRSEWRTFANDEGD-DPSRVGAASD 89
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
L L T I+ GGS +++SS +RNL+ AF+ I + D+ L
Sbjct: 90 -LEGIEQLDTAISF-RDGGSGIARELQRAASRSQSSRSERNLLAAFRDIGSWCDQFSLPK 147
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
TI D A ++YK+ +++K LRG+ EA++AAC++IACRQ + PRT +E C++ + +KK +
Sbjct: 148 TISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFREICNLTH-VSKKTL 206
Query: 185 GRAKEFIVKHLEAEMGQSVEMGTIHAS----DYLRRFCSNLGM 223
G+ + + + G S S + L R+C++L +
Sbjct: 207 GQCYKALEQAFNLAPGASAHQSATAPSSGPENLLVRYCNHLDL 249
>gi|374633244|ref|ZP_09705611.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Metallosphaera yellowstonensis
MK1]
gi|373524728|gb|EHP69605.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Metallosphaera yellowstonensis
MK1]
Length = 306
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 127/238 (53%), Gaps = 18/238 (7%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
+++FD G+ ICSE G V+E VD+ EWR F E + RVGGPLN + GLS
Sbjct: 16 KIIFDADRGEYICSETGEVIEERIVDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDRGLS 74
Query: 74 TVIA---KPTAGGST------ELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLV 123
T+I K G + E+L +++AR S DRNL QA + + + LGL
Sbjct: 75 TLIDWKDKDAIGRNLDPKRRLEVLRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLGLP 134
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
++KD IY+K ++ +RGR+ E++VAA +Y +CR+ RT+ E +KE
Sbjct: 135 KSVKDEGALIYRKAVEKGLVRGRSIESVVAAAIYASCRRMKIARTLDEIAQYTKA-NRKE 193
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDL 241
+ R +++ L +V++ DY+ R S LG++ ++K A E ++K++++
Sbjct: 194 VARCYRLLLREL------NVDVPVSDPKDYVTRIGSLLGLSGASMKLAAEILEKAKNV 245
>gi|452206957|ref|YP_007487079.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452083057|emb|CCQ36340.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 318
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 118/241 (48%), Gaps = 18/241 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ + V G+ +C +CGLV+E ++D EWR F N S RVG P
Sbjct: 24 CPECESDSLVRSADGGGELVCEDCGLVIEEENIDRGPEWRAF-NHSERQSKSRVGAPTTQ 82
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 83 TMHDKGLTTQIDWKDKDAYGRSISSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 142
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
MS LG+ ++++ A+ IY++ D +RGR+ E + A LY ACRQE PR++ E V
Sbjct: 143 MSSALGVPRSVREVASVIYRRALDDDLIRGRSIEGVATAALYAACRQEGIPRSLDEVAEV 202
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
A +KEIGR +I + L S+ + + Y+ RFCS LG++ + + +E +
Sbjct: 203 AR-VEQKEIGRTYRYIAQEL------SLGLEPVDPVQYVPRFCSELGLSEEVEQKTREII 255
Query: 236 Q 236
+
Sbjct: 256 E 256
>gi|57641215|ref|YP_183693.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
gi|73919861|sp|Q5JGN1.1|TF2B1_PYRKO RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|57159539|dbj|BAD85469.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
Length = 300
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 120/231 (51%), Gaps = 12/231 (5%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
TE ++D S G+ +C CG V+E VDE EWR F + RVG P + LL GL
Sbjct: 13 TEFIYDPSRGEIVCKVCGYVIEENVVDEGPEWRAF-DPGQREKRARVGAPESILLHDKGL 71
Query: 73 STVIA--KPTAGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
ST I + G E + L K Q+R S +RNL A + ++ L L ++
Sbjct: 72 STDIGIDRSLTGLMREKMY-RLRKWQSRLRVSDAAERNLAFALSELDRLASNLSLPKHVE 130
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
+ A +Y++ + +RGR+ EA++AAC+Y ACR PRT+ E V+ KKEIGR+
Sbjct: 131 EEAARLYREAVRKGLIRGRSIEAVIAACVYAACRLLKVPRTLDEIADVSR-VDKKEIGRS 189
Query: 188 KEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKS 238
FI +HL + + +DY+ +F LG++ + + A E ++++
Sbjct: 190 FRFIARHLNLTPKKLF----VKPTDYVNKFADELGLSEKVRRRAIEILEEA 236
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LGL ++ RA EI ++ + G++ +VAA LYIA
Sbjct: 201 PKKLFVKPTDYVNKFADELGLSEKVRRRAIEILEEAYQRGLTSGKSPAGLVAAALYIASL 260
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E + RT +E VA T R KE + K
Sbjct: 261 MEGEKRTQREVAEVARVTEVTVRNRYKELVEK 292
>gi|399578753|ref|ZP_10772498.1| Transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236212|gb|EJN57151.1| Transcription initiation factor IIB [Halogranum salarium B-1]
Length = 327
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 120/248 (48%), Gaps = 19/248 (7%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
+ ++ C +C T +V G+ +C +CGLV++ VD EWR F + S RVG
Sbjct: 21 VVNNQCPECHS-TALVRSTDRGELVCDDCGLVVDDNVVDHGPEWRAF-DHSERQSKSRVG 78
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAF 110
P+ + GL+T I + LLS L K Q R D RNL A
Sbjct: 79 APVTQTMHDKGLTTTIDWKNQDSAGHLLSSEKRNQMHRLRKWQERIRTKDAGERNLQFAL 138
Query: 111 KSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVK 170
I M+ LG+ ++++ A IY++ D +RGR+ E + + LYIACRQE PR+++
Sbjct: 139 SEIDRMASALGVPRSVREVAAVIYRRALDTDLIRGRSIEGVATSALYIACRQEGIPRSLE 198
Query: 171 EFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKA 230
E SVA ++EIGR +I L + M + YL RFCS L ++ +
Sbjct: 199 EVSSVAR-VDRREIGRTYRYIAHEL------GLPMSPVDPKQYLPRFCSELELSEDVQQR 251
Query: 231 AQEAVQKS 238
A ++++
Sbjct: 252 ATTIIERT 259
>gi|315230585|ref|YP_004071021.1| transcription initiation factor B [Thermococcus barophilus MP]
gi|315183613|gb|ADT83798.1| transcription initiation factor B [Thermococcus barophilus MP]
Length = 306
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 120/237 (50%), Gaps = 24/237 (10%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIF-ANESSDHDPVRVGGPLNPLLSGGGLS 73
+++D G+ +C+ CG V+ +D EWR F A++ RVG P+ ++ GLS
Sbjct: 18 LIYDPERGEIVCTACGYVVAQNIIDSGPEWRAFDADQRVKRG--RVGAPMTMMIHDKGLS 75
Query: 74 TVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLV 123
+ I +SG+ L K Q R S +RNL A + M+ +LGL
Sbjct: 76 STIDWKNKDIHGHDISGTMRAKMYRLRKWQRRIRVSDAAERNLAFALSELDRMASQLGLP 135
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
IK+ A +Y+K ++ +RGR+ E + AACLY ACR PRT+ E VA KKE
Sbjct: 136 RNIKEMAAALYRKAVMERLIRGRSIEGVTAACLYAACRMAKVPRTLDEIEEVAR-VDKKE 194
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMT----NQAVKAAQEAVQ 236
IGR+ FI + L + + + DY+ RF LG++ N+AVK Q+A++
Sbjct: 195 IGRSYRFIARELHLRLTPTSPI------DYVSRFADQLGLSERTKNRAVKILQKAIK 245
Score = 40.4 bits (93), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 42/95 (44%)
Query: 97 ARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACL 156
AR H +S +D+LGL K+RA +I +K GR + AA L
Sbjct: 203 ARELHLRLTPTSPIDYVSRFADQLGLSERTKNRAVKILQKAIKLGLTSGRGPMGVAAAAL 262
Query: 157 YIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
YIA E + +T +E VA+ T R KE +
Sbjct: 263 YIASVLEGEKKTQREVAEVAHVTEVTVRNRYKELV 297
>gi|16120252|ref|NP_395840.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169237618|ref|YP_001690821.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195241|sp|Q9HHK5.1|TF2B3_HALSA RecName: Full=Transcription initiation factor IIB 3; Short=TFIIB 3
gi|10584386|gb|AAG20975.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167728395|emb|CAP15204.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 317
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 120/243 (49%), Gaps = 21/243 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C V+ D S + +C +CGLVLE +D EWR F N S RVG P
Sbjct: 25 CPECNSAN-VITDQS--ERVCEDCGLVLEDDQIDHGPEWRAF-NSSERDQKSRVGAPTTK 80
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLS----GSLGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S + L K Q R D RNL A I
Sbjct: 81 TMHDKGLTTQIDWKDKDAYGRSLDAKKRNQMNRLRKWQERIRTKDAGERNLQFALSEIDR 140
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + ACLY ACRQE PRT++E V
Sbjct: 141 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATACLYAACRQEGIPRTLEEVTEV 200
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
A +KEIGR ++ + L S+E+ +YL RF S+L ++ + + A+E +
Sbjct: 201 AR-IDQKEIGRTYRYVAQEL------SLEIQPTDPKEYLPRFASDLELSEEVIAKAREII 253
Query: 236 QKS 238
S
Sbjct: 254 DTS 256
>gi|218199682|gb|EEC82109.1| hypothetical protein OsI_26126 [Oryza sativa Indica Group]
Length = 341
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 133/278 (47%), Gaps = 37/278 (13%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLE--AYSVDETSEWRIFANESSDHDPVRVG- 60
SYC C+R T +V DH+ GD IC+ C L A + E WR A
Sbjct: 9 SYCQHCQRTTPMVLDHATGDAICTGCAFDLGNGANACPEPPRWRAAAGHGDSDGDRSSSS 68
Query: 61 ---------GPLNPLLSGG-GLSTVIAKPTAGG--------STELLSGSLGKLQARSSHP 102
+PLL GG G++ + P ++ +G + R P
Sbjct: 69 SSVGGDVSPAAADPLLQGGEGVACSVGAPPVQPRVRGAVVPPKQMRAGGAVPTKVRCGVP 128
Query: 103 D--RNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPL-RGRNQEAIVAACLYIA 159
D + L + F +I+ M+ RLGL + DRA E+ +K+E+ + +GR+++A+ AACL+ A
Sbjct: 129 DTSKALAEGFDAIAGMASRLGLADKVSDRAKEVLRKLEEARACPKGRSRDALYAACLHAA 188
Query: 160 CRQENKPRTVKEFCSVAN--GTTKKEIGRAKEFIVKHLEAE---MGQSVEM--------G 206
CR E PRT+KE + + TK+++G+ I +HL E Q+ +M
Sbjct: 189 CRVEGAPRTLKELIAATSDAAATKRDLGKFINAIKRHLGMEERGQDQAADMKASGGGVGV 248
Query: 207 TIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDIR 244
+ A DYL R+ S +GM+ Q AA+ A + + LD+R
Sbjct: 249 VVRAGDYLHRYGSAVGMSGQEASAARRAAGRLDSLDVR 286
>gi|312136694|ref|YP_004004031.1| transcription initiation factor iib (tfiib) [Methanothermus
fervidus DSM 2088]
gi|311224413|gb|ADP77269.1| Transcription initiation factor IIB (TFIIB) [Methanothermus
fervidus DSM 2088]
Length = 307
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 126/248 (50%), Gaps = 19/248 (7%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
+ S C +C +++ DH + +C +CGLV++ +D EWR F +E + RVG
Sbjct: 6 LKGSVCPECGS-EDLIEDHERAEIVCRKCGLVIDEKLIDMGPEWRAFDHEQREKR-TRVG 63
Query: 61 GPLNPLLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAF 110
P+ + GLST+I K G S + L K Q + S +RNL A
Sbjct: 64 APVTYTIHDKGLSTMIDWRNKDIYGKDIPAKSRAQWYRLRKWQRKIRISGATERNLAFAL 123
Query: 111 KSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVK 170
+ ++ RL L T+++ A+ IY+ +K +RGR+ E +VAA LY ACR+ N PRT+
Sbjct: 124 SELDRIASRLNLPRTVRETASVIYRDAVKKKLIRGRSIEEVVAAALYAACRKCNVPRTLD 183
Query: 171 EFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKA 230
E V+ G KK +GR F+ + L ++ + DY+ RF S LG++ +
Sbjct: 184 EIAEVS-GVKKKGVGRTYRFLARKL------NIRLPPTSPIDYVPRFASELGLSGKVQSK 236
Query: 231 AQEAVQKS 238
A E ++K+
Sbjct: 237 AIEIIKKA 244
>gi|15897377|ref|NP_341982.1| transcription initiation factor IIB [Sulfolobus solfataricus P2]
gi|284173282|ref|ZP_06387251.1| transcription initiation factor IIB [Sulfolobus solfataricus 98/2]
gi|14195237|sp|P58111.1|TF2B1_SULSO RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|13813602|gb|AAK40772.1| Transcription initiation factor IIB (TFIIB) homolog (TFB-1)
[Sulfolobus solfataricus P2]
Length = 309
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 121/236 (51%), Gaps = 18/236 (7%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
+++FD G+ ICSE G VLE +D+ EWR F E + RVGGPLN + GLS
Sbjct: 19 KIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKEKRS-RVGGPLNNTIHDRGLS 77
Query: 74 TVI--AKPTAGGST-------ELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLV 123
T+I A G T E L +++AR S DRNL QA + + + L L
Sbjct: 78 TLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLP 137
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
++KD A IY+K ++ +RGR+ E++VAA +Y ACR+ RT+ E +KE
Sbjct: 138 KSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLDEIAQYTKA-NRKE 196
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSE 239
+ R +++ L+ V + DY+ R + LG++ +K A E + K++
Sbjct: 197 VARCYRLLLRELD------VSVPVSDPKDYVTRIANLLGLSGAVMKTAAEIIDKAK 246
>gi|76801491|ref|YP_326499.1| transcription initiation factor TFB 1 [Natronomonas pharaonis DSM
2160]
gi|76557356|emb|CAI48933.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 322
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 117/241 (48%), Gaps = 18/241 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + V G+ +C +CGLV+E ++D EWR F N S RVG P
Sbjct: 28 CPECDSDSLVRSGDGGGELVCEDCGLVIEEENIDRGPEWRAF-NHSERQSKSRVGAPTTQ 86
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 87 TMHDKGLTTQIDWKDKDAYGRSISSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 146
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
MS LG+ ++++ A+ IY++ D +RGR+ E + A LY ACRQE PR++ E V
Sbjct: 147 MSSALGVPRSVREVASVIYRRALDDDLIRGRSIEGVATAALYAACRQEGIPRSLDEVADV 206
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
A +KEIGR +I + L S+ + + Y+ RFCS LG++ + + +E +
Sbjct: 207 AR-VEQKEIGRTYRYIAQEL------SLGLEPVDPVQYVPRFCSELGLSEEVEQKTREII 259
Query: 236 Q 236
+
Sbjct: 260 E 260
>gi|227827925|ref|YP_002829705.1| transcription initiation factor IIB [Sulfolobus islandicus M.14.25]
gi|227830647|ref|YP_002832427.1| transcription initiation factor IIB [Sulfolobus islandicus
L.S.2.15]
gi|229579555|ref|YP_002837954.1| transcription initiation factor IIB [Sulfolobus islandicus
Y.G.57.14]
gi|229585192|ref|YP_002843694.1| transcription initiation factor IIB [Sulfolobus islandicus M.16.27]
gi|238620152|ref|YP_002914978.1| transcription initiation factor IIB [Sulfolobus islandicus M.16.4]
gi|284998175|ref|YP_003419942.1| hypothetical protein [Sulfolobus islandicus L.D.8.5]
gi|385773629|ref|YP_005646195.1| transcription factor TFIIB [Sulfolobus islandicus HVE10/4]
gi|385776265|ref|YP_005648833.1| transcription initiation factor TFIIB, cyclin-related protein
[Sulfolobus islandicus REY15A]
gi|227457095|gb|ACP35782.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
L.S.2.15]
gi|227459721|gb|ACP38407.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
M.14.25]
gi|228010270|gb|ACP46032.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
Y.G.57.14]
gi|228020242|gb|ACP55649.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
M.16.27]
gi|238381222|gb|ACR42310.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
M.16.4]
gi|284446070|gb|ADB87572.1| conserved hypothetical protein [Sulfolobus islandicus L.D.8.5]
gi|323475013|gb|ADX85619.1| transcription initiation factor TFIIB, cyclin-related protein
[Sulfolobus islandicus REY15A]
gi|323477743|gb|ADX82981.1| transcription factor TFIIB [Sulfolobus islandicus HVE10/4]
Length = 309
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 121/236 (51%), Gaps = 18/236 (7%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
+++FD G+ ICSE G VLE +D+ EWR F E + RVGGPLN + GLS
Sbjct: 19 KIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKEKRS-RVGGPLNNTIHDRGLS 77
Query: 74 TVI--AKPTAGGST-------ELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLV 123
T+I A G T E L +++AR S DRNL QA + + + L L
Sbjct: 78 TLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLP 137
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
++KD A IY+K ++ +RGR+ E++VAA +Y ACR+ RT+ E +KE
Sbjct: 138 KSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLDEIAQYTKA-NRKE 196
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSE 239
+ R +++ L+ V + DY+ R + LG++ +K A E + K++
Sbjct: 197 VARCYRLLLRELD------VSVPVSDPKDYVTRIANLLGLSGAVMKTAAEIIDKAK 246
>gi|229581781|ref|YP_002840180.1| transcription initiation factor IIB [Sulfolobus islandicus
Y.N.15.51]
gi|228012497|gb|ACP48258.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
Y.N.15.51]
Length = 309
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 121/236 (51%), Gaps = 18/236 (7%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
+++FD G+ ICSE G VLE +D+ EWR F E + RVGGPLN + GLS
Sbjct: 19 KIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKEKRS-RVGGPLNNTIHDRGLS 77
Query: 74 TVI--AKPTAGGST-------ELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLV 123
T+I A G T E L +++AR S DRNL QA + + + L L
Sbjct: 78 TLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLP 137
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
++KD A IY+K ++ +RGR+ E++VAA +Y ACR+ RT+ E +KE
Sbjct: 138 KSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLDEIAQYTKA-NRKE 196
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSE 239
+ R +++ L+ V + DY+ R + LG++ +K A E + K++
Sbjct: 197 VARCYRLLLRELD------VSVPVSDPKDYVTRIANLLGLSGAVMKTAAEIIDKAK 246
>gi|396491116|ref|XP_003843493.1| similar to transcription initiation factor iib [Leptosphaeria
maculans JN3]
gi|312220072|emb|CBY00014.1| similar to transcription initiation factor iib [Leptosphaeria
maculans JN3]
Length = 368
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 126/252 (50%), Gaps = 30/252 (11%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS-DHDPVRVGGPL 63
C DC+ +V + SAGDTIC CG VL +D SEWR F+N+ + DP R+G
Sbjct: 38 CPDCQESPPNLVEEFSAGDTICGSCGRVLADRIIDTRSEWRTFSNDDQGNDDPSRIGDAA 97
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRN--LIQAFKSISAMSDRLG 121
NPLL G L+T I G L L + +S+H N L A+ IS + D
Sbjct: 98 NPLLHGSQLATEIGFGDGG----LRVRELSRAHNKSNHDKANKALQAAYGQISTLCDSQN 153
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
+ T + A ++K +D K +G++Q+AI+A C++IACRQ + R+ +E + N +K
Sbjct: 154 INKTTAETAKYLFKMTDDVKLFKGKSQDAIIAGCIFIACRQHRQQRSFREIFKMTN-VSK 212
Query: 182 KEIGRA----KEFIVKHLEAEMGQSV----------------EMGTIHASDYLRRFCSNL 221
KE+GR + ++ K + + G +V E + A+ + R C+ L
Sbjct: 213 KEVGRTFKALEAYLQKTQKEKTGPTVAGNGAVMDTTNLLSTDENRSTSAAMLMPRACAKL 272
Query: 222 GM-TNQAVKAAQ 232
G+ TN + A Q
Sbjct: 273 GLGTNVQIVAEQ 284
>gi|388857243|emb|CCF49256.1| probable SUA7-TFIIB subunit (transcription initiation factor),
factor E [Ustilago hordei]
Length = 375
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 138/260 (53%), Gaps = 27/260 (10%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C DCK + + +GD +C++CGLV+ +D SEWR FANE D DP RVG N
Sbjct: 47 CRDCKTDPPNLAEEFESGDLVCADCGLVVGENIIDTRSEWRTFANEDGD-DPSRVGAASN 105
Query: 65 PLLSGGG--LSTVIAKPTAG-GSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLG 121
PLL G L + I G G++ L ++ + + DRN++ AF+ I D +
Sbjct: 106 PLLDGINEQLESRIGYRDGGTGASRDLQRTMNRA---TGTRDRNMLDAFEDIQRKCDSIH 162
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L T+ D A + Y++VE++K LRG+ +AI+AA +Y+AC+ + PRT E CS+ + +K
Sbjct: 163 LPRTVSDVAKQAYRRVEEEKILRGKKPDAIIAAAIYVACKMNHVPRTFPEICSLTS-VSK 221
Query: 182 KEIGRAKEFIVKH--LEAEMGQSVE----------------MGTIHASDYLRRFCSNLGM 223
K IG+ + + + L A SV+ +G A+D + R+C++LG+
Sbjct: 222 KHIGQCFKEMQQAFGLNATGTGSVDGSRASANNSGTSTPIGIGPTGAADLVGRYCNHLGL 281
Query: 224 TNQAVKAAQEAVQKSEDLDI 243
+ ++ ++ + +L I
Sbjct: 282 EMRVTRSTEDITARVRELGI 301
>gi|384433900|ref|YP_005643258.1| Transcription factor TFIIB cyclin-related protein [Sulfolobus
solfataricus 98/2]
gi|261602054|gb|ACX91657.1| Transcription factor TFIIB cyclin-related protein [Sulfolobus
solfataricus 98/2]
Length = 306
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 121/236 (51%), Gaps = 18/236 (7%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
+++FD G+ ICSE G VLE +D+ EWR F E + RVGGPLN + GLS
Sbjct: 16 KIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKEKRS-RVGGPLNNTIHDRGLS 74
Query: 74 TVI--AKPTAGGST-------ELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLV 123
T+I A G T E L +++AR S DRNL QA + + + L L
Sbjct: 75 TLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLP 134
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
++KD A IY+K ++ +RGR+ E++VAA +Y ACR+ RT+ E +KE
Sbjct: 135 KSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLDEIAQYTKA-NRKE 193
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSE 239
+ R +++ L+ V + DY+ R + LG++ +K A E + K++
Sbjct: 194 VARCYRLLLRELD------VSVPVSDPKDYVTRIANLLGLSGAVMKTAAEIIDKAK 243
>gi|289582685|ref|YP_003481151.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448281888|ref|ZP_21473181.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|289532238|gb|ADD06589.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445577517|gb|ELY31950.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
Length = 317
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 126/247 (51%), Gaps = 21/247 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T +V D G+ +C ECGLVL +D EWR F + +HD + RVG PL
Sbjct: 21 CPDCETDT-IVHDPDRGERVCGECGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAPLT 77
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G L +L+ R+ + +RNL A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGRSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ +Q +RGR+ E + + LY ACR+E PR+++E S
Sbjct: 138 RMVSALGVPKPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKEGIPRSLEEVTS 197
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ ++EIGR +I L+ + + + ++ RFCS L ++ + A E
Sbjct: 198 VSR-VDQREIGRTYRYIADELD------INLEPTNPRQFVPRFCSELDVSKEVETRAVEI 250
Query: 235 VQKSEDL 241
+ ++ DL
Sbjct: 251 IDQTTDL 257
>gi|448355612|ref|ZP_21544362.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445634733|gb|ELY87908.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
Length = 317
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 126/247 (51%), Gaps = 21/247 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T V+ D G+ +C ECGLVL +D EWR F + +HD + RVG PL
Sbjct: 21 CPDCETDT-VIHDPDRGERVCGECGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAPLT 77
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G L +L+ R+ + +RNL A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ +Q +RGR+ E + + LY ACR+E PR+++E S
Sbjct: 138 RMVSALGVPKPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKEGIPRSLEEVTS 197
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ ++EIGR +I L+ + + + ++ RFCS L ++ + A E
Sbjct: 198 VSR-VDQREIGRTYRYIADELD------INLEPTNPRQFVPRFCSELDVSKEVETRAVEI 250
Query: 235 VQKSEDL 241
+ ++ DL
Sbjct: 251 IDQTTDL 257
>gi|409096766|ref|ZP_11216790.1| transcription initiation factor IIB [Thermococcus zilligii AN1]
Length = 303
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 125/250 (50%), Gaps = 22/250 (8%)
Query: 1 MADS-YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRV 59
MAD+ C +C TE +D S G+ C+ CG VLE VDE EWR F E + R
Sbjct: 1 MADTRVCPNCGS-TEFFYDRSRGEYYCAGCGQVLEWNIVDEEPEWRAFEPEQREKR-ART 58
Query: 60 GGPLNPLLSGGGLSTVI--------AKPTAGGSTELLSGSLGKLQAR---SSHPDRNLIQ 108
G P+ ++ GLST I P G + L Q R + +RNL
Sbjct: 59 GPPMTNMIHDKGLSTDIDWRDKDIHGNPITGVYRNKMR-RLRMWQRRMRINDAAERNLAF 117
Query: 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT 168
A + M+ ++GL +K++A +Y+K +K +RGR+ E +V+A LY ACR E PRT
Sbjct: 118 ALSELDRMAVQMGLPKRVKEQAAVLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRT 177
Query: 169 VKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAV 228
+ E + TKKEIGR+ F+ + G + + DY+ RF LG++ +
Sbjct: 178 LDEIARFSK-VTKKEIGRSYRFMAR------GLGLNLLPTSPIDYVDRFGDALGVSARTK 230
Query: 229 KAAQEAVQKS 238
K A+E +Q++
Sbjct: 231 KRAREILQEA 240
>gi|451847728|gb|EMD61035.1| hypothetical protein COCSADRAFT_39743 [Cochliobolus sativus ND90Pr]
Length = 366
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 109/205 (53%), Gaps = 13/205 (6%)
Query: 6 CADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES-SDHDPVRVGGPL 63
C DCK +V + SAGDTIC CG VL +D SEWR F+N+ + DP R+G
Sbjct: 38 CPDCKENPPNLVEEFSAGDTICGSCGRVLADRIIDTRSEWRTFSNDDQGNDDPSRIGDAA 97
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRN--LIQAFKSISAMSDRLG 121
NPLL G L T I G LS + +S+H N L A+ I+A+ D
Sbjct: 98 NPLLHGSQLQTEIGFGDGGMRVRDLS----RAHNKSNHDKVNKALQAAYGQITALCDSQN 153
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
+ + A +YK +D K +G++Q+AI+A C++IACR+ ++ R+ +E + N +K
Sbjct: 154 ISRPTAETAKMLYKMTDDAKLFKGKSQDAIIAGCIFIACRKHDQQRSFREIFKMTN-VSK 212
Query: 182 KEIGRAKEFIVKHLEAEMGQSVEMG 206
KE+GR K LEA + +S G
Sbjct: 213 KEVGRT----FKVLEAFIQKSQNSG 233
>gi|443900112|dbj|GAC77439.1| transcription initiation factor TFIIB [Pseudozyma antarctica T-34]
Length = 375
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 137/260 (52%), Gaps = 27/260 (10%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C DCK + + +GD +C++CGLV+ +D SEWR FANE D DP RVG N
Sbjct: 47 CRDCKTDPPNLAEEFDSGDLVCADCGLVVGENIIDTRSEWRTFANEDGD-DPSRVGAASN 105
Query: 65 PLLSGGG--LSTVIAKPTAG-GSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLG 121
PLL G L + I G G++ L ++ + DRN++ AF+ I D +
Sbjct: 106 PLLDGINEQLESRIGYRDGGSGASRDLQRTMNRATGTR---DRNMLDAFEDIQRKCDSIH 162
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L T+ D A + Y++VE++K LRG+ +AI+AA +Y+AC+ + PRT E CS+ + +K
Sbjct: 163 LPRTVSDVAKQAYRRVEEEKILRGKKPDAIIAAAIYVACKMNHVPRTFPEICSLTS-VSK 221
Query: 182 KEIGRAKEFIVKH--LEAEMGQSVE----------------MGTIHASDYLRRFCSNLGM 223
K IG+ + + + L A SV+ +G A+D + R+C++LG+
Sbjct: 222 KHIGQCFKEMQQAFGLNATGTGSVDGSRASANNSGTSTPIGIGPTGAADLVGRYCNHLGL 281
Query: 224 TNQAVKAAQEAVQKSEDLDI 243
+ ++ ++ + +L +
Sbjct: 282 EMRVTRSTEDITARVRELGV 301
>gi|452823058|gb|EME30072.1| transcription initiation factor TFIIB [Galdieria sulphuraria]
Length = 332
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 89/251 (35%), Positives = 123/251 (49%), Gaps = 26/251 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++V DH+ GD IC CGLV VD SEWR F N+ S DP RVGGP NP
Sbjct: 25 CKECGS-DDLVEDHAQGDVICRNCGLVAAERIVDLGSEWRNFENDDSGTDPSRVGGPNNP 83
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR--SSHPDRNLIQAFKSISAMSDRLGLV 123
LL G STVI S L+ L + Q R +S DR L+ AF IS ++R L
Sbjct: 84 LLESGP-STVIGGGAVSDSRS-LNARLNRAQNRHNTSKSDRVLLDAFSLISQYAERSYLS 141
Query: 124 TTIKDRANEIYKKVEDQ---KPLRGRNQE-------AIVAACLYIACRQENKPRTVKEFC 173
+ DRA E++K D P GR + ++VAA L+ A + E PRT KE
Sbjct: 142 QRVVDRAQELFKLYFDHLTLNPQGGRTRYLKEHETVSVVAASLHWASQIEGVPRTFKEMS 201
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHAS--DYLRRFCSNLGMTNQAVKAA 231
S+ K + +M QS+++ ++ S D++ RFC L + + + A
Sbjct: 202 SLTQVPKK---------TLSDTYLKMKQSLKLNQLNKSTEDFIGRFCFYLRLPHFFISKA 252
Query: 232 QEAVQKSEDLD 242
+ VQ D+D
Sbjct: 253 LQIVQVCRDVD 263
>gi|448405176|ref|ZP_21572617.1| transcription initiation factor TFB [Haloterrigena limicola JCM
13563]
gi|445662584|gb|ELZ15349.1| transcription initiation factor TFB [Haloterrigena limicola JCM
13563]
Length = 325
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 119/243 (48%), Gaps = 19/243 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V + + + IC ECGLV+E ++D EWR F N + + RVG P
Sbjct: 32 CPECDSGA-LVASNDSNEIICEECGLVIEEQNIDHGPEWRAF-NHAERQNKSRVGAPTTQ 89
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I +S L K Q R D RNL A I
Sbjct: 90 TMHDKGLTTQIDWKNKDAHGRSISSKKRNQLNRLRKWQERIRTKDAGERNLQFALSEIDR 149
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + +CLY CRQE PR+++E V
Sbjct: 150 MASALGVPRSVREVASVIYRQALSEDLIRGRSIEGVATSCLYAGCRQEGIPRSLEEVTEV 209
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ KKEIGR +I K L S+EM +Y+ RFCS+L ++ + A E +
Sbjct: 210 SR-VGKKEIGRTYRYIAKEL------SLEMKPADPKEYVPRFCSDLEVSEEVKMKAIEII 262
Query: 236 QKS 238
+S
Sbjct: 263 DES 265
>gi|71021421|ref|XP_760941.1| hypothetical protein UM04794.1 [Ustilago maydis 521]
gi|46101016|gb|EAK86249.1| hypothetical protein UM04794.1 [Ustilago maydis 521]
Length = 375
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 137/260 (52%), Gaps = 27/260 (10%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C DCK + + +GD +C++CGLV+ +D SEWR FANE D DP RVG N
Sbjct: 47 CRDCKTDPPNLAEEFESGDLVCADCGLVVGENIIDTRSEWRTFANEDGD-DPSRVGAASN 105
Query: 65 PLLSGGG--LSTVIAKPTAG-GSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLG 121
PLL G L + I G G++ L ++ + DRN++ AF+ I D +
Sbjct: 106 PLLDGINEQLESRIGYRDGGTGASRDLQRTMNRATGTR---DRNMLDAFEDIQRKCDSIH 162
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L T+ D A + Y++VE++K LRG+ +AI+AA +Y+AC+ + PRT E CS+ + +K
Sbjct: 163 LPRTVSDVAKQAYRRVEEEKILRGKKPDAIIAAAIYVACKMNHVPRTFPEICSLTS-VSK 221
Query: 182 KEIGRAKEFIVKH--LEAEMGQSVE----------------MGTIHASDYLRRFCSNLGM 223
K IG+ + + + L A SV+ +G A+D + R+C++LG+
Sbjct: 222 KHIGQCFKEMQQAFGLNATGTGSVDGSRASANNSGTSTPIGIGPTGAADLVGRYCNHLGL 281
Query: 224 TNQAVKAAQEAVQKSEDLDI 243
+ ++ ++ + +L I
Sbjct: 282 EMRITRSTEDITARVRELGI 301
>gi|254166565|ref|ZP_04873419.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|254167488|ref|ZP_04874340.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289596282|ref|YP_003482978.1| Zinc finger TFIIB-type domain protein [Aciduliprofundum boonei
T469]
gi|197623751|gb|EDY36314.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|197624175|gb|EDY36736.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289534069|gb|ADD08416.1| Zinc finger TFIIB-type domain protein [Aciduliprofundum boonei
T469]
Length = 313
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 133/248 (53%), Gaps = 19/248 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T +++D+ G+ +C +CG V+E +D+ EWR F E D R G PL
Sbjct: 17 CPECGS-THLIWDYERGELVCGDCGAVIEDSFIDQGPEWRAFDAEQ-DEKRARTGAPLTF 74
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSISA 115
L GL+T I+ K + G + + + K R S+ +RNL A + ++
Sbjct: 75 LSHDKGLATEISWSNKDSYGKRIPHKNRAQIYRVRKWHQRIRVSNAAERNLSVALQELNN 134
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
+S ++GL +++ A IY+K ++ +RGR+ E+IVAA +Y ACR+ PRT+ E
Sbjct: 135 VSSKMGLPKDVRETAAIIYRKAVEKNLIRGRSIESIVAASIYAACRKVGMPRTLDEVAK- 193
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
A+ KK+IGRA +HL E+ +++ T A+ Y+ +FCS L + V A+E V
Sbjct: 194 ASELNKKKIGRA----YRHLTKELNLNLKPTT--ATSYITQFCSKLHLDKNVVNKAEEIV 247
Query: 236 QKSEDLDI 243
Q++ + I
Sbjct: 248 QQATERGI 255
>gi|448411918|ref|ZP_21576274.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
gi|445669852|gb|ELZ22460.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
Length = 326
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 125/251 (49%), Gaps = 26/251 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + +H G+T+C+ECGLV+E +D EWR F N S + RVG P
Sbjct: 33 CPECGGRLDADTEH--GETVCAECGLVVEEDEIDRGPEWRAF-NPSEKDEKSRVGAPTTN 89
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 90 MMHDKGLSTNIGWQNKDAYGNS--LSSNQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 146
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL T+++ A+ IY++ ++ L GR+ E + A LY A RQ N PR++ E
Sbjct: 147 IDRMASALGLPKTVRETASVIYRRALEENLLPGRSIEGVATASLYAAARQANTPRSLDEM 206
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
+V+ K E+ R ++V+ L ++E+ YL RF S+L +++ + A+
Sbjct: 207 TAVSR-VEKMELTRTYRYVVREL------NLEIKPADPESYLPRFVSDLELSDDTERRAR 259
Query: 233 EAVQKSEDLDI 243
E + + D I
Sbjct: 260 ELIVSARDQGI 270
>gi|255540855|ref|XP_002511492.1| transcription initiation factor iib, putative [Ricinus communis]
gi|223550607|gb|EEF52094.1| transcription initiation factor iib, putative [Ricinus communis]
Length = 90
Score = 117 bits (293), Expect = 5e-24, Method: Composition-based stats.
Identities = 60/103 (58%), Positives = 69/103 (66%), Gaps = 15/103 (14%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
MADSYC DC R+TE+V DHSAGDTIC+ECGL R AN+SSDH P RVG
Sbjct: 1 MADSYCTDCMRVTEIVMDHSAGDTICAECGL-------------RTSANQSSDHGPNRVG 47
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPD 103
P+NPLL+ GGL+TVI+K T S L S SLGK R+S PD
Sbjct: 48 APVNPLLANGGLTTVISKTTK--SNALFSASLGKWPNRASDPD 88
>gi|84490148|ref|YP_448380.1| transcription initiation factor IIB [Methanosphaera stadtmanae DSM
3091]
gi|121731831|sp|Q2NEL6.1|TF2B_METST RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|84373467|gb|ABC57737.1| transcription initiation factor IIB (TFIIB) [Methanosphaera
stadtmanae DSM 3091]
Length = 311
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 124/248 (50%), Gaps = 19/248 (7%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
++ C +C T+++ DH G+ +C CGLV++ VD EWR F +E D RVG P
Sbjct: 12 ETKCPECGS-TKLINDHERGEVVCGACGLVIDDNIVDMGPEWRAFDHEQRDKR-TRVGAP 69
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKS 112
+ + GLST+I K G + + L K Q + S +RNL A
Sbjct: 70 ITYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSE 129
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
+ S RLGL ++++ A+ +Y+ + K +RGR+ E +VAA LY ACR+ PRT+ E
Sbjct: 130 LDRDSSRLGLPRSVRESASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCKVPRTLDEI 189
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ +KKE+GR F+ + L + + DY+ RF S L ++ A
Sbjct: 190 ADVSR-VSKKEVGRTYRFLTRELH------IRLPPTSPIDYVPRFASELNLSGVVQSKAI 242
Query: 233 EAVQKSED 240
E + ++ D
Sbjct: 243 EIINQAMD 250
>gi|345005737|ref|YP_004808590.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344321363|gb|AEN06217.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 318
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 116/243 (47%), Gaps = 19/243 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C EV+ D G+ +C +CGLVL+ +D EWR F N S RVG P+
Sbjct: 25 CPECSS-EEVITDDDQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 82
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A +
Sbjct: 83 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEVDR 142
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ ++ +RGR+ E + A LY ACRQE PR++ E V
Sbjct: 143 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEVAEV 202
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +E+ + ++ RF S LG++ + A E +
Sbjct: 203 SR-VPQKEIGRTYRYISQEL------GLELKPVDPKQFVPRFASELGLSEEVQSKATEII 255
Query: 236 QKS 238
S
Sbjct: 256 DVS 258
>gi|379335328|gb|AFD03312.1| transcription factor TFIIB cyclin-related protein [uncultured
archaeon W4-93a]
Length = 307
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 108/207 (52%), Gaps = 20/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C C + ++V D ++G+ C+ CG V+ D +EWR F+NE S RVG +
Sbjct: 14 CPSCGK-RKIVTDDTSGELFCAYCGFVINEKLEDTGAEWRTFSNEESSR--TRVGAGTSL 70
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSL-----------GKLQARSSHPDRNLIQAFKSIS 114
+ GLST+I K + + LSGS+ + QA SS DRNL QA +
Sbjct: 71 TMHDMGLSTIIGKANKDSTGKPLSGSMKSSIERLRTWDSRTQAHSS-ADRNLRQALNEMD 129
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
+ D+L L + ++A IY+K ++K +RGR+ +VAACLY ACR PRT+ +
Sbjct: 130 KLKDKLALADVVVEKAAYIYRKAMEKKLVRGRSIHGLVAACLYAACRNTETPRTLDDM-- 187
Query: 175 VANGTT--KKEIGRAKEFIVKHLEAEM 199
ANG +K++ R I + LE +M
Sbjct: 188 -ANGINIRRKDVARCYRLIFRELELKM 213
>gi|34394694|dbj|BAC84000.1| putative Transcription initiation factor IIB [Oryza sativa Japonica
Group]
gi|222637101|gb|EEE67233.1| hypothetical protein OsJ_24371 [Oryza sativa Japonica Group]
Length = 362
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 132/278 (47%), Gaps = 37/278 (13%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLE--AYSVDETSEWRIFANESSDHDPVRVG- 60
SYC C+R T +V DH+ GD IC+ C L A + E WR A
Sbjct: 9 SYCQHCQRTTPMVLDHATGDAICTGCAFDLGNGANACPEPPRWRAAAGHGDSDGDRSSSS 68
Query: 61 ---------GPLNPLLSGG-GLSTVIAKPTAGG--------STELLSGSLGKLQARSSHP 102
+PLL GG G++ + P ++ +G + R P
Sbjct: 69 SSVGGDVSPAAADPLLQGGEGVACSVGAPPVQPRVRGAVVPPKQMRAGGAVPPKVRCGVP 128
Query: 103 D--RNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPL-RGRNQEAIVAACLYIA 159
D + L + F +I M+ RLGL + DRA E+ +K+E+ + +GR+++A+ AACL+ A
Sbjct: 129 DTSKALAEGFDAIVGMASRLGLADKVSDRAKEVLRKLEEARACPKGRSRDALYAACLHAA 188
Query: 160 CRQENKPRTVKEFCSVAN--GTTKKEIGRAKEFIVKHLEAE---MGQSVEMGT------- 207
CR E PRT+KE + + TK+++G+ I +HL E Q+ +M
Sbjct: 189 CRVEGAPRTLKELIAATSDAAATKRDLGKFINAIKRHLGMEERGQDQAADMKASGGGVGV 248
Query: 208 -IHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDIR 244
+ A DYL R+ S +GM+ Q AA+ A + + LD+R
Sbjct: 249 VVRAGDYLHRYGSAVGMSGQEASAARRAAGRLDSLDVR 286
>gi|55376957|ref|YP_134807.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448634689|ref|ZP_21675087.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|448640892|ref|ZP_21677679.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|448651198|ref|ZP_21680267.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|448678748|ref|ZP_21689755.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|448689160|ref|ZP_21694897.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|55229682|gb|AAV45101.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445749662|gb|EMA01107.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445761417|gb|EMA12665.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445770725|gb|EMA21783.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|445772735|gb|EMA23780.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445779030|gb|EMA29972.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 319
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 117/240 (48%), Gaps = 20/240 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ +E + G+ +C +CGLV+E ++D EWR F N S RVG P
Sbjct: 27 CPECE--SESISSDGGGELVCEDCGLVIEDENIDRGPEWRAF-NHSERQSKSRVGAPTTQ 83
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A I
Sbjct: 84 TMHDKGLTTQIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ ++ +RGR+ E + ACLY ACRQE PR+++E V
Sbjct: 144 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATACLYAACRQEGIPRSLEEVSDV 203
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR ++ + LE ++M + Y+ RF S L ++ + A E +
Sbjct: 204 SR-VEQKEIGRTYRYVAQELE------LKMEPVDPKQYVPRFASELELSEEVQSKANEII 256
>gi|433593418|ref|YP_007296159.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448333396|ref|ZP_21522596.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|433307928|gb|AGB33739.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445622834|gb|ELY76276.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
Length = 320
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 118/245 (48%), Gaps = 19/245 (7%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
+++ C +C + +V G+ +C +CGL++E ++D EWR F N + RVG
Sbjct: 22 VSEQTCDECGS-SSLVTSEDQGELVCEDCGLIIETTNIDRGPEWRAF-NHAERKSKSRVG 79
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAF 110
P + GL+T I LS L K Q R D RNL A
Sbjct: 80 APTTQTMHDKGLTTQIDWKDQDAHGRSLSADKRSRMNRLRKWQERIRAKDAGERNLQFAL 139
Query: 111 KSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVK 170
I M+ LG+ ++++ A+ IY++ D+ +RGR+ E + ACLY ACR+E PR+++
Sbjct: 140 SEIDRMASALGIPRSVREVASVIYRRALDEDLIRGRSIEGVATACLYAACRREGIPRSLE 199
Query: 171 EFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKA 230
E V+ +KEIGR +I + L S+ M + +Y+ RFCS L +
Sbjct: 200 EIADVSR-VERKEIGRTYRYIAQEL------SLAMEPVDPKEYVPRFCSELDSSETVQAK 252
Query: 231 AQEAV 235
A E +
Sbjct: 253 ATEII 257
>gi|344211069|ref|YP_004795389.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|448667562|ref|ZP_21686062.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|343782424|gb|AEM56401.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|445770130|gb|EMA21198.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 319
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 117/240 (48%), Gaps = 20/240 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ +E + G+ +C +CGLV+E ++D EWR F N S RVG P
Sbjct: 27 CPECE--SESISSDGGGELVCEDCGLVIEDENIDRGPEWRAF-NHSERQSKSRVGAPTTQ 83
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A I
Sbjct: 84 TMHDKGLTTQIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ ++ +RGR+ E + ACLY ACRQE PR+++E V
Sbjct: 144 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATACLYAACRQEGIPRSLEEVSDV 203
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR ++ + LE ++M + Y+ RF S L ++ + A E +
Sbjct: 204 SR-VEQKEIGRTYRYVAQELE------LKMEPVDPKQYVPRFASELELSEEVQSKANEII 256
>gi|448409173|ref|ZP_21574555.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
gi|445673121|gb|ELZ25683.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
Length = 313
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 119/240 (49%), Gaps = 19/240 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ + +V G+ +C +CGL+++ ++D EWR F N S + RVG P
Sbjct: 20 CPECES-SALVTSADGGEIVCEDCGLIIDEGNIDRGPEWRAF-NHSERQEKSRVGAPTTQ 77
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A I
Sbjct: 78 TMHDKGLTTQIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 137
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ D+ +RGR+ E + ACLY ACRQE+ PR+++E V
Sbjct: 138 MASALGVPRSVREVASVIYRRALDEDLIRGRSIEGVATACLYAACRQEDIPRSLEEVSEV 197
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR ++ + L S++M + Y+ RF S L ++ + A E +
Sbjct: 198 SR-VEQKEIGRTYRYVAQEL------SLKMEPVDPKQYVPRFVSELELSEEVQAKANEII 250
>gi|448359569|ref|ZP_21548219.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|445642204|gb|ELY95273.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 317
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 125/246 (50%), Gaps = 21/246 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T +V D G+ +C ECGLVL +D EWR F + +HD + RVG PL
Sbjct: 21 CPDCETDT-IVHDPDRGERVCDECGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAPLT 77
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G L +L+ R+ + +RNL A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ +Q +RGR+ E + + LY ACR+E PR+++E S
Sbjct: 138 RMVSALGVPKPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKEGIPRSLEEVTS 197
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ ++EIGR +I L+ + + + ++ RFCS L ++ + A E
Sbjct: 198 VSR-VDQREIGRTYRYIADELD------INLEPTNPRQFVPRFCSELDVSKEVETRAVEI 250
Query: 235 VQKSED 240
+ ++ D
Sbjct: 251 INQTTD 256
>gi|402594223|gb|EJW88149.1| transcription initiation factor IIB [Wuchereria bancrofti]
Length = 210
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 87/141 (61%), Gaps = 7/141 (4%)
Query: 103 DRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQ 162
DR + Q I MS R+ L +I+D A +I+K V D K LRG+N EA AACLYIACR+
Sbjct: 5 DRQMSQGLSVIREMSARIHLPKSIEDGAAKIFKDVLDSKALRGKNNEAQAAACLYIACRK 64
Query: 163 ENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLG 222
E PRT KE C+ A+ +KKEIGR + I+K LE + Q I ++D++ RFC NLG
Sbjct: 65 EGVPRTFKEICA-ASRVSKKEIGRCFKLIIKSLETSLEQ------ITSADFMSRFCGNLG 117
Query: 223 MTNQAVKAAQEAVQKSEDLDI 243
+ + AA +K+ +LD+
Sbjct: 118 LPHSIQAAATRIAKKAVELDL 138
>gi|448417415|ref|ZP_21579351.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445677903|gb|ELZ30399.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 296
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 118/230 (51%), Gaps = 14/230 (6%)
Query: 19 HSAG-DTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA 77
H+ G +T+C +CGLV+ Y++D EWR FA+++SD P R G PL GLST I
Sbjct: 23 HAEGRETVCGDCGLVVSEYAIDHGPEWRSFADDASD--PKRTGAPLTRSRHDRGLSTEIG 80
Query: 78 KPTA-GGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEI 133
+ T G L + R S+ +RN + AF I ++ L L I+D A +
Sbjct: 81 RSTRLKGRKRRQMARLRRQHNRARISTKRERNQVYAFTEIRRLASALSLPERIRDHACSL 140
Query: 134 YKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
++ + + LRGR+ E AAC+Y ACR N RTV E + A T ++
Sbjct: 141 FRSAQKEDLLRGRSLEGFAAACVYAACRAANVSRTVGEVVAEAKATRAEQTA-----AYD 195
Query: 194 HLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
L E+G + +G + ++Y+ RF + L ++ +A + A+E V ++ D I
Sbjct: 196 ALNRELG--LPVGPVDPAEYVPRFATRLDLSREAERRAREYVAQAVDAGI 243
>gi|324511266|gb|ADY44696.1| Transcription initiation factor IIB [Ascaris suum]
Length = 211
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 91/144 (63%), Gaps = 7/144 (4%)
Query: 100 SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIA 159
++ DR + QA I MS R+ L +I+D A ++++ V D K L+G+N EA AACLYIA
Sbjct: 2 NNTDRQMSQAMSVIREMSARIHLSKSIEDNAAKVFRDVLDSKALKGKNNEAQAAACLYIA 61
Query: 160 CRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCS 219
CR+E PRT KE C+ A+ +KKEIGR + I+K LE + Q I ++D++ RFC
Sbjct: 62 CRKEGVPRTFKEICA-ASRVSKKEIGRCFKLIIKSLETNLEQ------ITSADFMSRFCG 114
Query: 220 NLGMTNQAVKAAQEAVQKSEDLDI 243
NLG+++ AA +K+ +LD+
Sbjct: 115 NLGLSHSIQAAATRIAKKAVELDL 138
>gi|330833963|ref|YP_004408691.1| transcription initiation factor IIB [Metallosphaera cuprina Ar-4]
gi|329566102|gb|AEB94207.1| transcription initiation factor IIB [Metallosphaera cuprina Ar-4]
Length = 305
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 129/250 (51%), Gaps = 22/250 (8%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGG 61
+D+ C K ++FD G+ ICSE G V+E VD+ EWR F E + RVGG
Sbjct: 7 SDNECPQDK----IIFDADRGEYICSENGEVIEERIVDQGPEWRAFTPEEKEKRS-RVGG 61
Query: 62 PLNPLLSGGGLSTVIA---KPTAGGST------ELLSGSLGKLQAR-SSHPDRNLIQAFK 111
PLN + GLST+I K G + E+L +++AR S DRNL QA
Sbjct: 62 PLNQTIHDRGLSTLIDWKDKDAIGRNLDPKRRLEVLRWRKWQIRARIQSSIDRNLAQAMN 121
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
+ + + LGL ++KD IY+K ++ +RGR+ E++VAA +Y +CR+ RT+ E
Sbjct: 122 ELERIGNLLGLPKSVKDEGALIYRKAVEKGLVRGRSIESVVAAAIYASCRRMKIARTLDE 181
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
+KE+ R +++ L +V + DY+ R S LG++ ++K A
Sbjct: 182 IAQYTKA-NRKEVARCYRLLLREL------NVGVPVSDPKDYVTRIGSLLGLSGASMKLA 234
Query: 232 QEAVQKSEDL 241
E + K++++
Sbjct: 235 AEILDKAKNV 244
>gi|448611149|ref|ZP_21661783.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445743581|gb|ELZ95062.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 288
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 115/224 (51%), Gaps = 13/224 (5%)
Query: 21 AGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPT 80
AG+T+C++CGLV+ Y +D EWR FA++ D +P R G PL GLST I + T
Sbjct: 21 AGETVCTDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTRSRHDRGLSTEIGRST 78
Query: 81 A-GGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKK 136
G L + R SS +RN + AF I ++ LGL I+D+A +++
Sbjct: 79 RIKGRKRRKFARLRRQHNRARISSKRERNQVYAFTEIRRVTGALGLPNHIRDQACSLFES 138
Query: 137 VEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLE 196
+++ LRGR+ E AAC+Y ACR R+++E C+V+ T + + + L
Sbjct: 139 AQNEDLLRGRSLEGFAAACVYAACRVGGISRSIEEVCTVSKSTESEH-----QAAYRALN 193
Query: 197 AEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
E+G + + ++YL RF + L + + A+E V + D
Sbjct: 194 RELG--LPVAPADPTEYLPRFATKLDLGRDVERRAREYVADARD 235
>gi|390937904|ref|YP_006401642.1| transcription factor TFIIB cyclin-related protein [Desulfurococcus
fermentans DSM 16532]
gi|390191011|gb|AFL66067.1| Transcription factor TFIIB cyclin-related protein [Desulfurococcus
fermentans DSM 16532]
Length = 319
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 120/236 (50%), Gaps = 17/236 (7%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
++V+D + G+ +C + G V+E +DE EWR F +E R GGP+ + G +
Sbjct: 32 KIVYDTAHGEYVCQDTGEVIEEKVIDERPEWRAFTSEERGRR-ARTGGPVTATVHDMGFA 90
Query: 74 TVIAKPTAGGSTELLSGS------LGKLQARS---SHPDRNLIQAFKSISAMSDRLGLVT 124
T I + L+ L K QAR+ + +RNL QA + +SD L L +
Sbjct: 91 TTIDYTDRDAAGRRLTEKKHELVKLRKWQARTRIITSVERNLAQAMNELDRLSDILNLPS 150
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+K+ A IY+ ++ +RGR+ E+I+AA +Y+ACR+ PR++ E +KEI
Sbjct: 151 YVKEEAARIYRNAVEKGIVRGRSIESIIAATIYLACREMKVPRSLDEITRHTR-VNRKEI 209
Query: 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
R +++ L +++ T DY+ R LG+ QAVK A E + K+++
Sbjct: 210 ARCYRLLLREL------RIKVATTDPVDYVPRIVHGLGLPGQAVKIAIEIINKAKE 259
>gi|284176274|ref|YP_003406551.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|284017931|gb|ADB63878.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
Length = 318
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 21/246 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T +V D G+ +C ECGLVL +D EWR F + +HD + RVG PL
Sbjct: 21 CPDCETDT-IVHDPDRGERVCEECGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAPLT 77
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G L +L+ R+ + +RNL A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSADKQGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ +Q +RGR+ E + + LY ACR+E+ PR+++E S
Sbjct: 138 RMVSALGVPKPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTS 197
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ ++EIGR +I L+ + + + ++ RFCS L + A E
Sbjct: 198 VSR-VDQREIGRTYRYIADELD------INLEPTNPRQFVPRFCSELDVGKDVETKAVEI 250
Query: 235 VQKSED 240
+ ++ D
Sbjct: 251 IDRTTD 256
>gi|389845720|ref|YP_006347959.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388243026|gb|AFK17972.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 289
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 115/224 (51%), Gaps = 13/224 (5%)
Query: 21 AGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPT 80
AG+T+C++CGLV+ Y +D EWR FA++ D +P R G PL GLST I + T
Sbjct: 22 AGETVCTDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTRSRHDRGLSTEIGRST 79
Query: 81 A-GGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKK 136
G L + R SS +RN + AF I ++ LGL I+D+A +++
Sbjct: 80 RIKGRKRRKFARLRRQHNRARISSKRERNQVYAFTEIRRVTGALGLPNHIRDQACSLFES 139
Query: 137 VEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLE 196
+++ LRGR+ E AAC+Y ACR R+V+E C V+ T + + + L
Sbjct: 140 AQNEDLLRGRSLEGFAAACVYAACRVAGISRSVEEVCDVSKSTESEH-----QAAYRALN 194
Query: 197 AEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
++G + + ++YL RF + L + + A+E V ++ D
Sbjct: 195 RDLG--LPVAPADPTEYLPRFATKLDLDRDTERRAREYVAEARD 236
>gi|388583858|gb|EIM24159.1| TFIIB-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 336
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/230 (38%), Positives = 135/230 (58%), Gaps = 17/230 (7%)
Query: 6 CADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C +C+ VV + S+GD +C +CGLVL VD SEWR FAN+ D DP RVG N
Sbjct: 20 CPECQIPNPNVVEEFSSGDLVCGDCGLVLGDKVVDTRSEWRTFANDEGD-DPSRVGAANN 78
Query: 65 PLLSG-GGLSTVIAKPTAGGSTELLSGSLGKLQARSSH--PDRNLIQAFKSISAMSDRLG 121
PLL G T+I+ + G+T + S L + A+SSH +R L+ AF+ IS+M+D++
Sbjct: 79 PLLDGVDEFETMIS--SRDGNTGI-SRELQRATAKSSHGRSERGLLNAFRDISSMADQIS 135
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +I D A ++YK+V+++K LRG++ +AI+AAC++IACRQ PRT KE + K
Sbjct: 136 LPRSIADIAKQLYKRVDEEKLLRGKSTDAIIAACIFIACRQAGVPRTFKEVWGLTR-VPK 194
Query: 182 KEIGRAKEFIVKHL---EAEMGQSVEMGTIH-----ASDYLRRFCSNLGM 223
K IG+ + + + M V+ T++ D + R+C++L +
Sbjct: 195 KVIGQCFKVLERAFGSNSPSMTPGVDTPTLNNIQSGPEDLMARYCNHLNL 244
>gi|6578937|gb|AAF18139.1|AF205429_1 archaeal transcription factor B [Sulfolobus acidocaldarius]
Length = 309
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 122/237 (51%), Gaps = 18/237 (7%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
+++FD G+ IC+E G V+E +D+ EWR F E + RVGGPLN + G+S
Sbjct: 17 KIIFDEERGEYICTETGEVIEERIIDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDMGIS 75
Query: 74 TVIA---KPTAGGST------ELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLV 123
TVI K G S E+L +++ R S DRNL QA + + + L L
Sbjct: 76 TVIDWKDKDAMGRSLDPKRRLEVLRWRKWQIRTRIQSSIDRNLAQAMNELERIGNLLNLP 135
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+KD A IY+K ++ +RGR+ E++VAA +Y ACR+ RT+ E +KE
Sbjct: 136 KAVKDEAALIYRKAVEKGLVRGRSIESVVAASIYAACRRMKMARTLDEIAQFTKA-NRKE 194
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
+ R I++ L+ +E+ DY+ R + L ++ +K A E ++K+++
Sbjct: 195 VARCYRLILRELD------IEVPVSDPKDYVTRIGTLLSLSGITMKHAAEIIEKAKN 245
>gi|73920958|sp|Q9UWN6.2|TF2B_SULAC RecName: Full=Transcription initiation factor IIB; Short=TFIIB
Length = 307
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 122/237 (51%), Gaps = 18/237 (7%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
+++FD G+ IC+E G V+E +D+ EWR F E + RVGGPLN + G+S
Sbjct: 17 KIIFDEERGEYICTETGEVIEERIIDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDMGIS 75
Query: 74 TVIA---KPTAGGST------ELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLV 123
TVI K G S E+L +++ R S DRNL QA + + + L L
Sbjct: 76 TVIDWKDKDAMGRSLDPKRRLEVLRWRKWQIRTRIQSSIDRNLAQAMNELERIGNLLNLP 135
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+KD A IY+K ++ +RGR+ E++VAA +Y ACR+ RT+ E +KE
Sbjct: 136 KAVKDEAALIYRKAVEKGLVRGRSIESVVAASIYAACRRMKMARTLDEIAQFTKA-NRKE 194
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
+ R I++ L+ +E+ DY+ R + L ++ +K A E ++K+++
Sbjct: 195 VARCYRLILRELD------IEVPVSDPKDYVTRIGTLLSLSGITMKHAAEIIEKAKN 245
>gi|448420259|ref|ZP_21581021.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445673877|gb|ELZ26432.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 317
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 116/240 (48%), Gaps = 19/240 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ T V+ D G+ +C +CGLVL+ +D EWR F N S RVG P+
Sbjct: 24 CPECES-TNVITDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A I
Sbjct: 82 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ ++ +RGR+ E + + LY ACRQE PR++ E V
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVAEV 201
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +E+ + ++ RF S LG++ + A E +
Sbjct: 202 SR-VPQKEIGRTYRYISQEL------GLELKPVDPKQFVPRFASALGLSEEVQAKATEII 254
>gi|448322503|ref|ZP_21511973.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
gi|445601261|gb|ELY55250.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
Length = 310
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 119/243 (48%), Gaps = 19/243 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ +V D G+ IC +CGLV+E +D EWR F N + RVG P
Sbjct: 16 CPECES-DNLVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 73
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 74 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 133
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 134 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 193
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +EM + Y+ RFCS L ++ + A E +
Sbjct: 194 SR-VERKEIGRTYRYISQEL------GLEMRPVDPKKYVPRFCSELELSEEVQTKANEII 246
Query: 236 QKS 238
+K+
Sbjct: 247 EKT 249
>gi|15678905|ref|NP_276022.1| transcription initiation factor IIB [Methanothermobacter
thermautotrophicus str. Delta H]
gi|14195233|sp|O26971.1|TF2B_METTH RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|2621979|gb|AAB85383.1| transcription initiation factor TFIIB [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 310
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 126/244 (51%), Gaps = 19/244 (7%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
++ C +C ++ D+ + +C +CGLV++ VD EWR F +E D RVG P
Sbjct: 11 ETKCPECGS-DDLRGDYERAEIVCGKCGLVIDDNLVDMGPEWRAFDHEQRDKR-TRVGAP 68
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKS 112
+ + GLST+I K G + + L K Q + S +RNL A
Sbjct: 69 ITYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSE 128
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
+ S RLGL ++++ A+ +Y++ + K +RGR+ E +VAA LY ACR+ N PRT+ E
Sbjct: 129 LDRDSSRLGLPRSVREAASMVYRRAVENKLIRGRSIEGVVAASLYAACRKCNVPRTLDEI 188
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ +KKE+GR F+ + L ++++ DY+ RF S LG++ + A
Sbjct: 189 AEVSR-VSKKEVGRTYRFLTREL------NIKLPPTSPVDYVPRFASELGLSGEVQSKAI 241
Query: 233 EAVQ 236
E ++
Sbjct: 242 EIIE 245
>gi|383619979|ref|ZP_09946385.1| transcription initiation factor TFB [Halobiforma lacisalsi AJ5]
gi|448696408|ref|ZP_21697882.1| transcription initiation factor TFB [Halobiforma lacisalsi AJ5]
gi|445783614|gb|EMA34442.1| transcription initiation factor TFB [Halobiforma lacisalsi AJ5]
Length = 321
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 116/240 (48%), Gaps = 19/240 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++V + + + IC +CGL++E ++D EWR F N S RVG P
Sbjct: 28 CPECDS-ADLVTSNDSNEIICEDCGLIIEERNIDHGPEWRAF-NHSERQSKSRVGAPTTQ 85
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A I
Sbjct: 86 TMHDKGLTTQIDWKDKDAYGRSLSSEKRNQMNRLRKWQERIRTKDAGERNLQFALSEIDR 145
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ ++ IY++ + +RGR+ E + +CLY CRQE PR+++E V
Sbjct: 146 MASALGVPRSVREVSSVIYRRALTEDLIRGRSIEGVATSCLYAGCRQEGIPRSLEEVAEV 205
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ KKEIGR ++ K L +EM + +Y+ RFCS+L + + A E +
Sbjct: 206 SR-VEKKEIGRTYRYVAKEL------GLEMKPVDPKEYVPRFCSDLEASEEVEMKATEII 258
>gi|448616659|ref|ZP_21665369.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445751314|gb|EMA02751.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 288
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 115/224 (51%), Gaps = 13/224 (5%)
Query: 21 AGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPT 80
AG+T+C++CGLV+ Y +D EWR FA++ D +P R G PL GLST I + T
Sbjct: 21 AGETVCTDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTRSRHDRGLSTEIGRST 78
Query: 81 A-GGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKK 136
G L + R SS +RN + AF I ++ LGL I+D+A +++
Sbjct: 79 RIKGRKRRKFARLRRQHNRARISSKRERNQVYAFTEIRRVTGALGLPNHIRDQACSLFES 138
Query: 137 VEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLE 196
+++ LRGR+ E AAC+Y ACR R+V+E C V+ T + + + L
Sbjct: 139 AQNEDLLRGRSLEGFAAACVYAACRVAGISRSVEEVCDVSKSTESEH-----QAAYRALN 193
Query: 197 AEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
++G + + ++YL RF + L + + A+E V ++ D
Sbjct: 194 RDLG--LPVAPADPTEYLPRFATKLDLDRDTERRAREYVAEARD 235
>gi|269986930|gb|EEZ93206.1| transcription factor TFIIB cyclin-related protein [Candidatus
Parvarchaeum acidiphilum ARMAN-4]
Length = 307
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 130/242 (53%), Gaps = 18/242 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C C T V++D + G+ +C CG V+E+ ++D EWR F +E D R+G PL+
Sbjct: 12 CPSCGS-TSVMYDKTTGELVCQNCGYVIESDTIDYGREWRSFEDER-DEGKGRMGSPLSY 69
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS------LGKLQAR-SSHPDRNLIQAFKSISAMSD 118
G STVI K A S +L + + L K Q R S+ +RNL A + S+
Sbjct: 70 AKYDKGTSTVIGK--ASESIKLSNANRRTFYKLRKWQPRISTAYERNLKFALTELRHASN 127
Query: 119 RLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG 178
RL + I++ A ++Y++ ++ +RGR+ E+++A LY A R+ N+P T+ E
Sbjct: 128 RLHVSNIIQEEAAKMYREAITRRLVRGRSMESVIAGALYAAARKHNRPITLDEISETFE- 186
Query: 179 TTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKS 238
+KE+G+A + + L +++ SDY+ +F S LG++N+ V A + ++++
Sbjct: 187 VERKEVGKAYRLLCREL------GIKILPSSPSDYIYKFASELGVSNKTVSDAVKLLKEA 240
Query: 239 ED 240
ED
Sbjct: 241 ED 242
>gi|289579995|ref|YP_003478461.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448281233|ref|ZP_21472540.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448352650|ref|ZP_21541431.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|448358870|ref|ZP_21547544.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|289529548|gb|ADD03899.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445579163|gb|ELY33559.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|445641929|gb|ELY95000.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445644550|gb|ELY97563.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 320
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 119/243 (48%), Gaps = 19/243 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ +V D G+ IC +CGLV+E +D EWR F N + RVG P
Sbjct: 26 CPECE-SDNLVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 203
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +EM + Y+ RFCS L ++ + A E +
Sbjct: 204 SR-VERKEIGRTYRYISQEL------GLEMRPVDPKKYVPRFCSELELSEEVQTKANEII 256
Query: 236 QKS 238
+K+
Sbjct: 257 EKT 259
>gi|433590946|ref|YP_007280442.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448334479|ref|ZP_21523654.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|448385421|ref|ZP_21563927.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|433305726|gb|AGB31538.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445619811|gb|ELY73328.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|445656916|gb|ELZ09748.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 320
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 119/243 (48%), Gaps = 19/243 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ +V D G+ IC +CGLV+E +D EWR F N + RVG P
Sbjct: 26 CPECE-SDNLVKDSDRGELICEDCGLVVEEEQIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 203
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +EM + Y+ RFCS L ++ + A E +
Sbjct: 204 SR-VERKEIGRTYRYISQEL------GLEMRPVDPKKYVPRFCSELELSEEVQTKANEII 256
Query: 236 QKS 238
+K+
Sbjct: 257 EKT 259
>gi|448286652|ref|ZP_21477877.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|445574029|gb|ELY28538.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 304
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 117/243 (48%), Gaps = 19/243 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ T ++ D G+ +C +CGLVL+ +D EWR F N S RVG P+
Sbjct: 11 CPECES-TNIITDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 68
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A I
Sbjct: 69 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 128
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ ++ +RGR+ E + + LY ACRQE PR++ E V
Sbjct: 129 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVAEV 188
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +E+ + ++ RF S LG++ + A E +
Sbjct: 189 SR-VPQKEIGRTYRYISQEL------GLELKPVDPKQFVPRFASALGLSEEVQAKATEII 241
Query: 236 QKS 238
S
Sbjct: 242 DVS 244
>gi|435848097|ref|YP_007310347.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433674365|gb|AGB38557.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 320
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 119/243 (48%), Gaps = 19/243 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ +V D G+ IC +CGLV+E +D EWR F N + RVG P
Sbjct: 26 CPECE-SDNLVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 203
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +EM + Y+ RFCS L ++ + A E +
Sbjct: 204 SR-VERKEIGRTYRYISQEL------GLEMRPVDPKKYVPRFCSELELSEEVQTKANEII 256
Query: 236 QKS 238
+K+
Sbjct: 257 EKT 259
>gi|429192472|ref|YP_007178150.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|448325884|ref|ZP_21515262.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
gi|429136690|gb|AFZ73701.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|445613976|gb|ELY67661.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
Length = 320
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 119/243 (48%), Gaps = 19/243 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ +V D G+ IC +CGLV+E +D EWR F N + RVG P
Sbjct: 26 CPECE-SDNLVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 203
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +EM + Y+ RFCS L ++ + A E +
Sbjct: 204 SR-VERKEIGRTYRYISQEL------GLEMRPVDPKKYVPRFCSELELSEEVQTKANEII 256
Query: 236 QKS 238
+K+
Sbjct: 257 EKT 259
>gi|343426216|emb|CBQ69747.1| probable SUA7-TFIIB subunit (transcription initiation factor),
factor E [Sporisorium reilianum SRZ2]
Length = 370
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 137/260 (52%), Gaps = 27/260 (10%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C DCK + + +GD +C++CGLV+ +D SEWR FANE D DP RVG N
Sbjct: 42 CRDCKTDPPNLAEEFDSGDLVCADCGLVVGENIIDTRSEWRTFANEDGD-DPSRVGAASN 100
Query: 65 PLLSGGG--LSTVIAKPTAG-GSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLG 121
PLL G L + I G G++ L ++ + DR+++ AF+ I D +
Sbjct: 101 PLLDGINEQLESRIGYRDGGTGASRDLQRTMNRATGTR---DRHMLDAFEDIQRKCDSIH 157
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L T+ D A + Y++VE++K LRG+ +AI+AA +Y+AC+ + PRT E CS+ + +K
Sbjct: 158 LPRTVSDVAKQAYRRVEEEKILRGKKPDAIIAAAIYVACKMNHVPRTFPEICSLTS-VSK 216
Query: 182 KEIGRAKEFIVKH--LEAEMGQSVE----------------MGTIHASDYLRRFCSNLGM 223
K IG+ + + + L A SV+ +G A+D + R+C++LG+
Sbjct: 217 KHIGQCFKEMQQAFGLNATGTGSVDGSRASANNSGTSTPIGIGPTGAADLVGRYCNHLGL 276
Query: 224 TNQAVKAAQEAVQKSEDLDI 243
+ ++ ++ + +L I
Sbjct: 277 EMRITRSTEDITARVRELGI 296
>gi|448317588|ref|ZP_21507138.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
gi|445602979|gb|ELY56949.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
Length = 310
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 119/243 (48%), Gaps = 19/243 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ +V D G+ IC +CGLV+E +D EWR F N + RVG P
Sbjct: 16 CPECES-DNLVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 73
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 74 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 133
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 134 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 193
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +EM + Y+ RFCS L ++ + A E +
Sbjct: 194 SR-VERKEIGRTYRYISQEL------GLEMRPVDPKKYVPRFCSELELSEEVQTKANEII 246
Query: 236 QKS 238
+K+
Sbjct: 247 EKT 249
>gi|70606656|ref|YP_255526.1| transcription initiation factor IIB [Sulfolobus acidocaldarius DSM
639]
gi|449066878|ref|YP_007433960.1| transcription initiation factor IIB [Sulfolobus acidocaldarius N8]
gi|449069150|ref|YP_007436231.1| transcription initiation factor IIB [Sulfolobus acidocaldarius
Ron12/I]
gi|68567304|gb|AAY80233.1| transcription initiation factor B [Sulfolobus acidocaldarius DSM
639]
gi|449035386|gb|AGE70812.1| transcription initiation factor IIB [Sulfolobus acidocaldarius N8]
gi|449037658|gb|AGE73083.1| transcription initiation factor IIB [Sulfolobus acidocaldarius
Ron12/I]
Length = 311
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 122/237 (51%), Gaps = 18/237 (7%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
+++FD G+ IC+E G V+E +D+ EWR F E + RVGGPLN + G+S
Sbjct: 21 KIIFDEERGEYICTETGEVIEERIIDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDMGIS 79
Query: 74 TVIA---KPTAGGST------ELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLV 123
TVI K G S E+L +++ R S DRNL QA + + + L L
Sbjct: 80 TVIDWKDKDAMGRSLDPKRRLEVLRWRKWQIRTRIQSSIDRNLAQAMNELERIGNLLNLP 139
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+KD A IY+K ++ +RGR+ E++VAA +Y ACR+ RT+ E +KE
Sbjct: 140 KAVKDEAALIYRKAVEKGLVRGRSIESVVAASIYAACRRMKMARTLDEIAQFTKA-NRKE 198
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
+ R I++ L+ +E+ DY+ R + L ++ +K A E ++K+++
Sbjct: 199 VARCYRLILRELD------IEVPVSDPKDYVTRIGTLLSLSGITMKHAAEIIEKAKN 249
>gi|397772845|ref|YP_006540391.1| transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448337167|ref|ZP_21526249.1| transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|448340531|ref|ZP_21529502.1| transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|448346310|ref|ZP_21535196.1| transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|448400256|ref|ZP_21571323.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|397681938|gb|AFO56315.1| transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445626513|gb|ELY79856.1| transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445629964|gb|ELY83234.1| transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|445632899|gb|ELY86105.1| transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445667796|gb|ELZ20436.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 320
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 119/243 (48%), Gaps = 19/243 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ +V D G+ IC +CGLV+E +D EWR F N + RVG P
Sbjct: 26 CPECE-SDNLVKDSDRGELICEDCGLVVEEEQIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 203
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +EM + Y+ RFCS L ++ + A E +
Sbjct: 204 SR-VERKEIGRTYRYISQEL------GLEMRPVDPKKYVPRFCSELELSEEVQTKANEII 256
Query: 236 QKS 238
+K+
Sbjct: 257 EKT 259
>gi|448336885|ref|ZP_21525972.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445627223|gb|ELY80548.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
Length = 319
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 124/244 (50%), Gaps = 21/244 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T ++ D G+ +C+ECGLVL +D EWR F + +HD + RVG PL
Sbjct: 23 CPDCETDT-IIHDPDRGEQVCAECGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAPLT 79
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G L +L+ R+ + +RNL A I
Sbjct: 80 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 139
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ +Q +RGR+ E + + LY ACR+E+ PR+++E S
Sbjct: 140 RMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTS 199
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
VA ++EIGR +I L+ + + + ++ RFCS L + A E
Sbjct: 200 VAR-VEQREIGRTYRYIADELD------INLEPTNPRQFVPRFCSELDVDTDVETKAIEI 252
Query: 235 VQKS 238
+ ++
Sbjct: 253 IDRT 256
>gi|284165857|ref|YP_003404136.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|336252199|ref|YP_004595306.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|448313767|ref|ZP_21503479.1| transcription initiation factor IIB [Natronolimnobius
innermongolicus JCM 12255]
gi|448350243|ref|ZP_21539062.1| transcription initiation factor IIB [Natrialba taiwanensis DSM
12281]
gi|448362255|ref|ZP_21550866.1| transcription initiation factor IIB [Natrialba asiatica DSM 12278]
gi|448369894|ref|ZP_21556347.1| transcription initiation factor IIB [Natrialba aegyptia DSM 13077]
gi|448391654|ref|ZP_21566749.1| transcription initiation factor IIB [Haloterrigena salina JCM
13891]
gi|284015512|gb|ADB61463.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|335336188|gb|AEH35427.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|445597077|gb|ELY51155.1| transcription initiation factor IIB [Natronolimnobius
innermongolicus JCM 12255]
gi|445637750|gb|ELY90898.1| transcription initiation factor IIB [Natrialba taiwanensis DSM
12281]
gi|445648776|gb|ELZ01724.1| transcription initiation factor IIB [Natrialba asiatica DSM 12278]
gi|445650334|gb|ELZ03258.1| transcription initiation factor IIB [Natrialba aegyptia DSM 13077]
gi|445665066|gb|ELZ17744.1| transcription initiation factor IIB [Haloterrigena salina JCM
13891]
Length = 320
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 119/243 (48%), Gaps = 19/243 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ +V D G+ IC +CGLV+E +D EWR F N + RVG P
Sbjct: 26 CPECE-SDNLVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 203
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +EM + Y+ RFCS L ++ + A E +
Sbjct: 204 SR-VERKEIGRTYRYISQEL------GLEMRPVDPKKYVPRFCSELELSEEVQTKANEII 256
Query: 236 QKS 238
+K+
Sbjct: 257 EKT 259
>gi|448298665|ref|ZP_21488693.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
gi|445591335|gb|ELY45541.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
Length = 320
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 119/243 (48%), Gaps = 19/243 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ +V D G+ IC +CGLV+E +D EWR F N + RVG P
Sbjct: 26 CPECE-SDNLVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 203
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +EM + Y+ RFCS L ++ + A E +
Sbjct: 204 SR-VERKEIGRTYRYISQEL------GLEMRPVDPKKYVPRFCSELELSEEVQTKANEII 256
Query: 236 QKS 238
+K+
Sbjct: 257 EKT 259
>gi|218883370|ref|YP_002427752.1| transcription initiation factor IIB [Desulfurococcus kamchatkensis
1221n]
gi|218764986|gb|ACL10385.1| Transcription initiation factor IIB (TFIIB) [Desulfurococcus
kamchatkensis 1221n]
Length = 319
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 120/236 (50%), Gaps = 17/236 (7%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
++V+D + G+ +C + G V+E +DE EWR F +E R GGP+ + G +
Sbjct: 32 KIVYDTTHGEYVCQDTGEVIEEKVIDERPEWRAFTSEERGRR-ARTGGPVTATVHDMGFA 90
Query: 74 TVIAKPTAGGSTELLSGS------LGKLQARS---SHPDRNLIQAFKSISAMSDRLGLVT 124
T I + L+ L K QAR+ + +RNL QA + +SD L L +
Sbjct: 91 TTIDYTDRDAAGRRLTEKKHELVKLRKWQARTRIITSVERNLAQAMNELDRLSDILNLPS 150
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+K+ A IY+ ++ +RGR+ E+I+AA +Y+ACR+ PR++ E +KEI
Sbjct: 151 YVKEEAARIYRNAVEKGIVRGRSIESIIAATIYLACREMKVPRSLDEITRHTR-VNRKEI 209
Query: 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
R +++ L +++ T DY+ R LG+ QAVK A E + K+++
Sbjct: 210 ARCYRLLLRELH------IKVTTTDPVDYVPRIVHGLGLPGQAVKIAIEIINKAKE 259
>gi|448330825|ref|ZP_21520101.1| transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445610661|gb|ELY64430.1| transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 320
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 119/243 (48%), Gaps = 19/243 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ +V D G+ IC +CGLV+E +D EWR F N + RVG P
Sbjct: 26 CPECE-SDNLVKDSDRGELICEDCGLVVEEEQIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 84 TMHDKGLTTTIDWKDKDDYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 203
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +EM + Y+ RFCS L ++ + A E +
Sbjct: 204 SR-VERKEIGRTYRYISQEL------GLEMRPVDPKKYVPRFCSELELSEEVQTKANEII 256
Query: 236 QKS 238
+K+
Sbjct: 257 EKT 259
>gi|110667646|ref|YP_657457.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109625393|emb|CAJ51817.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 346
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 130/248 (52%), Gaps = 25/248 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ T+++ D G+T+C++CGLV++ S+D EWR F + D RVG P
Sbjct: 50 CPECES-TQLITDDERGETVCADCGLVVDEDSIDRGPEWRAFDSAERDQ-KSRVGAPTTN 107
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
L+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 108 LMHDKGLSTNIGWQDKDAYGNS--LSSTQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 164
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
+ M+ LGL +++ A+ IY++ D++ L GR+ E + A LY A RQ PR++ E
Sbjct: 165 VDRMASALGLPENVRETASVIYRRALDEELLPGRSIEGVATASLYAAARQAGTPRSLDEI 224
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
+V+ + EI R ++V+ L+ +++ Y+ RF S+L ++++A + A+
Sbjct: 225 TNVSR-VGRDEIARTYRYVVRELK------LQIKPADPEQYVPRFASDLDLSDEAERRAR 277
Query: 233 EAVQKSED 240
+ ++ +++
Sbjct: 278 QLLRSAKE 285
>gi|448314502|ref|ZP_21504190.1| Transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
gi|445594820|gb|ELY48961.1| Transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
Length = 316
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 124/246 (50%), Gaps = 21/246 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC T ++ D G+ +C ECGLVL +D EWR F + +HD + RVG PL
Sbjct: 21 CPDCDTAT-IIHDPDRGERVCEECGLVLTEDPIDYGPEWRAF--NAQEHDQLSRVGAPLT 77
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G L +L+ R+ + +RNL A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGRSMSSEKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ +Q +RGR+ E + + LY ACR+E+ PR+++E +
Sbjct: 138 RMVSALGVPKPVKETASVIYRRALEQDLIRGRSIEGVATSSLYTACRKEDIPRSLEEVTA 197
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ ++EIGR +I L+ + + + ++ RFCS L ++ A E
Sbjct: 198 VSR-VDQREIGRTYRYIADELD------INLEPTNPRQFVPRFCSELDVSKDVETKAVEI 250
Query: 235 VQKSED 240
+ ++ D
Sbjct: 251 IDRTTD 256
>gi|448346035|ref|ZP_21534924.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445633968|gb|ELY87155.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 319
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 123/244 (50%), Gaps = 21/244 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T ++ D G+ +C ECGLVL +D EWR F + +HD + RVG PL
Sbjct: 23 CPDCETDT-IIHDPDRGEQVCEECGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAPLT 79
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G L +L+ R+ + +RNL A I
Sbjct: 80 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 139
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ +Q +RGR+ E + + LY ACR+E+ PR+++E S
Sbjct: 140 RMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTS 199
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
VA ++EIGR +I L+ + + + ++ RFCS L + A E
Sbjct: 200 VAR-VEQREIGRTYRYIADELD------INLEPTNPRQFVPRFCSELDVDTDVETKAIEI 252
Query: 235 VQKS 238
+ ++
Sbjct: 253 IDRT 256
>gi|385803088|ref|YP_005839488.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339728580|emb|CCC39735.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 346
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 130/248 (52%), Gaps = 25/248 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ T+++ D G+T+C++CGLV++ S+D EWR F + D RVG P
Sbjct: 50 CPECES-TQLITDDERGETVCADCGLVVDEDSIDRGPEWRAFDSAERDQ-KSRVGAPTTN 107
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
L+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 108 LMHDKGLSTNIGWQDKDAYGNS--LSSTQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 164
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
+ M+ LGL +++ A+ IY++ D++ L GR+ E + A LY A RQ PR++ E
Sbjct: 165 VDRMASALGLPENVRETASVIYRRALDEELLPGRSIEGVATASLYAAARQAGTPRSLDEI 224
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
+V+ + EI R ++V+ L+ +++ Y+ RF S+L ++++A + A+
Sbjct: 225 TNVSR-VGRDEIARTYRYVVRELK------LQIKPADPEQYVPRFASDLDLSDEAERRAR 277
Query: 233 EAVQKSED 240
+ ++ +++
Sbjct: 278 QLLRSAKE 285
>gi|313126498|ref|YP_004036768.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312292863|gb|ADQ67323.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
Length = 317
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 116/240 (48%), Gaps = 19/240 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ T ++ D G+ +C +CGLVL+ +D EWR F N S RVG P+
Sbjct: 24 CPECES-TNIITDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A I
Sbjct: 82 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ ++ +RGR+ E + + LY ACRQE PR++ E V
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVAEV 201
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +E+ + ++ RF S LG++ + A E +
Sbjct: 202 SR-VPQKEIGRTYRYISQEL------GLELKPVDPKQFVPRFASALGLSEEVQAKATEII 254
>gi|433590594|ref|YP_007280090.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448332002|ref|ZP_21521251.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|448384822|ref|ZP_21563557.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|433305374|gb|AGB31186.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445628140|gb|ELY81450.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|445657826|gb|ELZ10650.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 319
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 123/244 (50%), Gaps = 21/244 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T +V D G+ +C ECGLVL A +D EWR F + +HD + RVG PL
Sbjct: 23 CPDCETDT-IVHDPDRGERVCEECGLVLNADPIDYGPEWRAF--NAQEHDELSRVGAPLT 79
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G L +L+ R+ + +RNL A I
Sbjct: 80 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 139
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ +Q +RGR+ E + A LY ACR+E+ PR+++E +
Sbjct: 140 RMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATASLYTACRKEDIPRSLEEVTA 199
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ ++EIGR +I L + + + ++ RFCS L + A E
Sbjct: 200 VSR-VEQREIGRTYRYIADEL------GINLEPTNPRQFVPRFCSELDVGTDVETKAVEI 252
Query: 235 VQKS 238
+ ++
Sbjct: 253 IDRT 256
>gi|448312070|ref|ZP_21501821.1| Transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
gi|445603031|gb|ELY57000.1| Transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
Length = 323
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 116/240 (48%), Gaps = 19/240 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ T +V G+ +C ECGL++E ++D EWR F N S + RVG P
Sbjct: 29 CEECESGT-LVKSQDQGELVCDECGLIVEGSNIDRGPEWRAF-NHSERQNKSRVGAPTTQ 86
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I +S L K Q R D RNL A I
Sbjct: 87 TMHDKGLTTSIDWKNQDAYGRSISSDKRSQMRRLRKWQERIRTKDAGERNLQFALSEIDR 146
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ L + ++++ A IY++ D+ +RGR+ E + + LY ACR E PR+++E +V
Sbjct: 147 MASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEVATV 206
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR ++ + L +EM + Y+ RFCS+L ++ + A E +
Sbjct: 207 SR-VERKEIGRTYRYVAQEL------GLEMAPVDPKKYVPRFCSDLELSEEVTAKANEII 259
>gi|304315034|ref|YP_003850181.1| transcription initiation factor IIB [Methanothermobacter
marburgensis str. Marburg]
gi|302588493|gb|ADL58868.1| transcription initiation factor IIB [Methanothermobacter
marburgensis str. Marburg]
Length = 310
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 125/244 (51%), Gaps = 19/244 (7%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
++ C +C ++ D+ + +C +CGLV++ VD EWR F +E D RVG P
Sbjct: 11 ETKCPECGS-EDLRGDYERAEIVCGKCGLVIDDNLVDMGPEWRAFDHEQRDKR-TRVGAP 68
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKS 112
+ + GLST+I K G + + L K Q + S +RNL A
Sbjct: 69 ITYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSE 128
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
+ S RLGL ++++ A+ +Y++ + K +RGR+ E +VAA LY ACR N PRT+ E
Sbjct: 129 LDRDSSRLGLPRSVREAASMVYRRAVENKLIRGRSIEGVVAASLYAACRSCNVPRTLDEI 188
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ +KKE+GR F+ + L ++++ DY+ RF S LG++ + A
Sbjct: 189 AEVSR-VSKKEVGRTYRFLTREL------NIKLPPTSPVDYVPRFASELGLSGEVQSKAI 241
Query: 233 EAVQ 236
E ++
Sbjct: 242 EIIE 245
>gi|397773185|ref|YP_006540731.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448340837|ref|ZP_21529806.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|397682278|gb|AFO56655.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445629443|gb|ELY82726.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 319
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 124/244 (50%), Gaps = 21/244 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T ++ D G+ +C+ECGLVL +D EWR F + +HD + RVG PL
Sbjct: 23 CPDCETDT-IIHDPDRGEQVCAECGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAPLT 79
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G L +L+ R+ + +RNL A I
Sbjct: 80 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 139
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ +Q +RGR+ E + + LY ACR+E+ PR+++E S
Sbjct: 140 RMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTS 199
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
VA ++EIGR +I L+ + + + ++ RFCS L + A E
Sbjct: 200 VAR-VEQREIGRTYRYIADELD------INLEPTNPRQFVPRFCSELDVGTDVETKAIEI 252
Query: 235 VQKS 238
+ ++
Sbjct: 253 IDRT 256
>gi|448320031|ref|ZP_21509519.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
gi|445606437|gb|ELY60341.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
Length = 326
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/251 (33%), Positives = 124/251 (49%), Gaps = 26/251 (10%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D C +C +V D G+T+C +CGLV+E SVD EWR F + S ++ RVG P
Sbjct: 28 DVVCPEC--TGNLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DASEKNEKSRVGAP 84
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQA 109
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 85 TTNTMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQA 141
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
I M+ LGL T +++ A+ IY++ D+ L GR+ E + AC+Y A RQ PR++
Sbjct: 142 LGEIDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSL 201
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVK 229
E V+ K EI R ++V+ L +E+ Y+ RF S L ++++A
Sbjct: 202 DEIADVSR-VEKNEIARTYRYVVREL------GLEVQPADPESYVPRFASGLELSDEAEH 254
Query: 230 AAQEAVQKSED 240
A+ +Q +++
Sbjct: 255 RARGLLQNAKE 265
>gi|383621854|ref|ZP_09948260.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
gi|448702704|ref|ZP_21700137.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
gi|445777265|gb|EMA28235.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
Length = 320
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 118/243 (48%), Gaps = 19/243 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+ IC +CGLV+E +D EWR F N + RVG P
Sbjct: 26 CPECD-SDNLVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 203
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +EM + Y+ RFCS L ++ + A E +
Sbjct: 204 SR-VERKEIGRTYRYISQEL------GLEMRPVDPKKYVPRFCSELELSEEVQTKANEII 256
Query: 236 QKS 238
+K+
Sbjct: 257 EKT 259
>gi|15789590|ref|NP_279414.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235302|ref|YP_001688502.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195247|sp|Q9HSB3.1|TF2B6_HALSA RecName: Full=Transcription initiation factor IIB 6; Short=TFIIB 6
gi|10579944|gb|AAG18894.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726368|emb|CAP13149.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 319
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 125/248 (50%), Gaps = 26/248 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C L VV D G+++C++CGLV+E +D EWR F ++ D + RVG P
Sbjct: 25 CPECGGL--VVNDEEHGESVCADCGLVVEEDGIDRGPEWRAFDSKEKD-EKSRVGAPTTN 81
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
+ GLST I K G S L S K+Q R + +RNL QA
Sbjct: 82 TMHDKGLSTNIDWRDKDAYGNS--LSSNQRQKMQRLRKWNERFRTRDAK-ERNLKQALGE 138
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ + L GR+ E + +C+Y A RQ PR++ E
Sbjct: 139 IDRMASALGLPDNVRETASVIYRRALEDDLLPGRSIEGVATSCVYAAARQAGVPRSLDEI 198
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ K EI R ++V+ L +E+ Y+ RF S+LG++++A A+
Sbjct: 199 ADVSR-VEKAEIARTYRYVVREL------GLEVAPADPESYVPRFASDLGLSDEASHRAR 251
Query: 233 EAVQKSED 240
E ++ ++D
Sbjct: 252 ELLKTAKD 259
>gi|448300851|ref|ZP_21490848.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445584841|gb|ELY39146.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 316
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 122/241 (50%), Gaps = 21/241 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T ++ D G+ +C ECGLVL +D EWR F + +HD + RVG PL
Sbjct: 21 CPDCETDT-IIHDPDRGERVCEECGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAPLT 77
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G L +L+ R+ + +RNL A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ DQ +RGR+ E + + LY ACR+E+ PR+++E S
Sbjct: 138 RMVSALGVPRPVKETASVIYRQALDQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTS 197
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ ++EIGR +I L+ + + + ++ RFCS L + + A E
Sbjct: 198 VSR-VDQREIGRTYRYIADELD------INLEPTNPRQFVPRFCSELDVGKEVETKAVEI 250
Query: 235 V 235
+
Sbjct: 251 I 251
>gi|448306239|ref|ZP_21496148.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
gi|445598653|gb|ELY52708.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
Length = 320
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 118/243 (48%), Gaps = 19/243 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ +V D G+ IC +CGLV+E +D EWR F N RVG P
Sbjct: 26 CPECE-SENLVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQQKSRVGAPTTQ 83
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 203
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +EM + Y+ RFCS L ++ + A E +
Sbjct: 204 SR-VERKEIGRTYRYISQEL------GLEMRPVDPKKYVPRFCSELELSEEVQTKANEII 256
Query: 236 QKS 238
+K+
Sbjct: 257 EKT 259
>gi|433639225|ref|YP_007284985.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|448377483|ref|ZP_21560179.1| transcription initiation factor IIB [Halovivax asiaticus JCM 14624]
gi|433291029|gb|AGB16852.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|445655427|gb|ELZ08272.1| transcription initiation factor IIB [Halovivax asiaticus JCM 14624]
Length = 320
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 119/243 (48%), Gaps = 19/243 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ +V D G+ +C +CGLV+E +D EWR F N + RVG P
Sbjct: 26 CPECE-SDNLVKDSDRGELVCQDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 203
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +EM + Y+ RFCS L ++ + A E +
Sbjct: 204 SR-VERKEIGRTYRYISQEL------GLEMRPVDPKKYVPRFCSELELSEEVQTKANEII 256
Query: 236 QKS 238
+K+
Sbjct: 257 EKT 259
>gi|440797904|gb|ELR18978.1| transcription factor tfiib repeat domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 303
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 127/241 (52%), Gaps = 18/241 (7%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C DCK E + D + GD IC +CGLV+ VD SEWR FA+ S DP R +N
Sbjct: 2 CPDCKNPNGEFMEDFANGDMICRDCGLVVGDRIVDVRSEWRNFAD--SGDDPSRASR-VN 58
Query: 65 PLLSGGGLSTVIAK-PTAGGSTELLSGSLGKL-----QARSSHPDRNLIQAFKSISAMSD 118
L GGL+T IAK PT G GK+ + + S D+NL+ F I+ +++
Sbjct: 59 DWLPSGGLATEIAKLPTGPNGQNNGQGGGGKMSQWQRRIQLSQGDQNLLSGFDKITHIAE 118
Query: 119 RLGLVTTIKDRANEIYKKVEDQKPLRGR-NQEAIVAACLYIACRQENKPRTVKEFCSVAN 177
L L IK++A E+Y E ++ R +++IVAA +Y+AC++E PRT KE S
Sbjct: 119 ILVLPQKIKNKAKELYSSFESKRNKSMRCKKDSIVAAIIYMACKEEGVPRTFKEI-SKET 177
Query: 178 GTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQK 237
++KEI + + K L G++ ASD + RFCS L ++N+ + A + K
Sbjct: 178 EISEKEIRKYYRALNKILPKGTGRT------SASDLVNRFCSKLKLSNEIMNLATDIANK 231
Query: 238 S 238
+
Sbjct: 232 A 232
>gi|1943468|pdb|1VOL|A Chain A, Tfiib (Human Core Domain)TBP (A.THALIANA)TATA ELEMENT
Ternary Complex
Length = 204
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 88/138 (63%), Gaps = 7/138 (5%)
Query: 106 LIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENK 165
++ AFK I+ M+DR+ L DR N ++++ +QK L+GR +AI +ACLYIACRQE
Sbjct: 2 MMNAFKEITTMADRINLPRNKVDRTNNLFRQAYEQKSLKGRANDAIASACLYIACRQEGV 61
Query: 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTN 225
PRT KE C+V+ +KKEIGR + I+K LE SV++ I D++ RFCSNL +
Sbjct: 62 PRTFKEICAVSR-ISKKEIGRCFKLILKALET----SVDL--ITTGDFMSRFCSNLCLPK 114
Query: 226 QAVKAAQEAVQKSEDLDI 243
Q AA +K+ +LD+
Sbjct: 115 QVQMAATHIARKAVELDL 132
>gi|448302993|ref|ZP_21492943.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
gi|445594000|gb|ELY48167.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
Length = 310
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 118/243 (48%), Gaps = 19/243 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ +V D G+ IC +CGLV+E +D EWR F N RVG P
Sbjct: 16 CPECES-DNLVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQQKSRVGAPTTQ 73
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 74 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 133
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 134 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 193
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +EM + Y+ RFCS L ++ + A E +
Sbjct: 194 SR-VERKEIGRTYRYISQEL------GLEMRPVDPKKYVPRFCSELELSEEVQTKANEII 246
Query: 236 QKS 238
+K+
Sbjct: 247 EKT 249
>gi|385805988|ref|YP_005842386.1| Transcription initiation factor IIB (TFIIB) [Fervidicoccus fontis
Kam940]
gi|383795851|gb|AFH42934.1| Transcription initiation factor IIB (TFIIB) [Fervidicoccus fontis
Kam940]
Length = 316
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 121/232 (52%), Gaps = 18/232 (7%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+VFD G+ IC+E G VLE V++ EWR F E + R+GGPL+P + GL+T
Sbjct: 26 IVFDPERGEYICTETGEVLEQKLVNQGPEWRAFTPEEKEKRS-RIGGPLSPTVHDRGLTT 84
Query: 75 VIAKPTAGGSTELLSGS-------LGKLQARS---SHPDRNLIQAFKSISAMSDRLGLVT 124
+I S + L K Q RS S DRNL QA + +S++L L
Sbjct: 85 LIDWRDRDASGKKLEPKKRLEFLRYRKWQIRSRIQSSIDRNLAQAMNELDRLSNQLHLNR 144
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+++ A IY+K ++ +RGR+ E+++AA +Y+ACR + PRT+ E S+ +KEI
Sbjct: 145 AVREEAAVIYRKAVEKGLVRGRSIESVIAASVYVACRLKKLPRTLDEI-SLHTRANRKEI 203
Query: 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQ 236
R +VK L+ +++ DY+ R S L ++ +A+ A V+
Sbjct: 204 ARCYRLLVKELQ------LKVPIADPIDYIPRMGSLLDLSGKAMNIAARIVK 249
>gi|433421758|ref|ZP_20405837.1| transcription initiation factor TFB [Haloferax sp. BAB2207]
gi|432198809|gb|ELK55052.1| transcription initiation factor TFB [Haloferax sp. BAB2207]
Length = 318
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/251 (32%), Positives = 125/251 (49%), Gaps = 25/251 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + +V D G+T+C +CGLV+E +D EWR F N S + RVG P
Sbjct: 22 CPECGSES-LVSDTEHGETVCDDCGLVVEEDEIDHGPEWRAF-NSSEKDEKSRVGAPTTN 79
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 80 MMHDKGLSTNIGWQNKDAYGRS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 136
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D L GR+ E + + LY A R PR++ E
Sbjct: 137 IDRMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAGTPRSLDEI 196
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
SV+ K EI R ++V+ L S+E+ Y+ RF S LG++++A + A+
Sbjct: 197 TSVSR-VEKDEIARTYRYVVREL------SLEIKPADPEQYVPRFASELGLSDEAERQAR 249
Query: 233 EAVQKSEDLDI 243
+ ++ +++ I
Sbjct: 250 QLLRDAKETGI 260
>gi|240102532|ref|YP_002958841.1| transcription initiation factor IIB [Thermococcus gammatolerans
EJ3]
gi|239910086|gb|ACS32977.1| Transcription initiation factor TFIIB (tfb) [Thermococcus
gammatolerans EJ3]
Length = 303
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 125/249 (50%), Gaps = 20/249 (8%)
Query: 1 MADS-YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRV 59
MAD C C TE FD + G+ +C CG VLE VDE EWR F + R
Sbjct: 1 MADKRVCPVCGS-TEFFFDRTRGELVCRVCGYVLEENVVDEGPEWRAFDPDQRARR-ART 58
Query: 60 GGPLNPLLSGGGLSTVIA---KPTAGGS-TELLSGSLGKL---QAR---SSHPDRNLIQA 109
G P+ ++ GLST I K G T + L +L Q R + +RNL A
Sbjct: 59 GAPMTLMIHDKGLSTDIDWRDKDIHGNQITGMYRSKLRRLRMWQRRMRINDAAERNLAFA 118
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
+ M+ ++ L +K+ A +Y+K +K +RGR+ E +V+A LY ACR E PRT+
Sbjct: 119 LSELDRMAAQMRLPRRVKEAAAALYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTL 178
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVK 229
E V+ TKKEIGR+ F+ + G + + DY+ RF LG++++ +
Sbjct: 179 DEIARVSK-VTKKEIGRSYRFMAR------GLGLNLRPTSPIDYVDRFGDALGVSSKTKQ 231
Query: 230 AAQEAVQKS 238
A+E +Q++
Sbjct: 232 RAKEILQEA 240
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 8/118 (6%)
Query: 76 IAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYK 135
+ K G S ++ LG L R + P + D LG+ + K RA EI +
Sbjct: 187 VTKKEIGRSYRFMARGLG-LNLRPTSP-------IDYVDRFGDALGVSSKTKQRAKEILQ 238
Query: 136 KVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
+ + G+ + AA LY+A E + +T +E VA+ T R KE + K
Sbjct: 239 EAIKRGITSGKGPTGLAAAALYVASLLEGEKKTQREVAEVAHVTEVTVRNRYKELVEK 296
>gi|399578723|ref|ZP_10772468.1| transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236182|gb|EJN57121.1| transcription initiation factor IIB [Halogranum salarium B-1]
Length = 319
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 112/227 (49%), Gaps = 18/227 (7%)
Query: 19 HSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAK 78
HS G+ +C +CGLVL+ ++D EWR F N++ RVG P + GL+T I
Sbjct: 38 HSGGELVCDDCGLVLDEQNIDRGPEWRAF-NQNERDSKSRVGAPTTKTMHDKGLTTQIDW 96
Query: 79 PTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKD 128
LS L K Q R D RNL A + M+ LG + ++
Sbjct: 97 KNKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEMDRMASALGAPRSTRE 156
Query: 129 RANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAK 188
A+ +Y++ ++ +RGR+ EA+ +CLY ACR E PR++ E VA KEIGR
Sbjct: 157 VASVLYRRALNEDLIRGRSIEAVSTSCLYAACRMEGIPRSLDEVTEVAR-VPYKEIGRTY 215
Query: 189 EFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+I + L+ +EM + +Y+ RF S LG++ + + A E +
Sbjct: 216 RYIAQELK------LEMQPVDPKEYVPRFASELGVSEEVKQKANEII 256
>gi|257388719|ref|YP_003178492.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257171026|gb|ACV48785.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 317
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 118/240 (49%), Gaps = 20/240 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + + +G+ IC +CGLV+E ++D EWR F N S RVG P
Sbjct: 25 CPECD--STAISTDGSGELICEDCGLVIEDENIDRGPEWRAF-NHSERQSKSRVGAPTTQ 81
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ D+ +RGR+ E + +CLY ACRQE PR+++E V
Sbjct: 142 MASALGVPRSVREVASVIYRRALDEDLIRGRSIEGVATSCLYAACRQEGIPRSLEEVSDV 201
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR ++ + L+ ++M + Y+ RF S L ++ + A E +
Sbjct: 202 SR-VEQKEIGRTYRYVAQELK------LKMEPVDPKQYVPRFASELELSEEVQSKANEII 254
>gi|448366242|ref|ZP_21554496.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
gi|445654851|gb|ELZ07702.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
Length = 326
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 125/252 (49%), Gaps = 26/252 (10%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGG 61
+D C +C +V D G+T+C +CGLV+E SVD EWR F + + ++ RVG
Sbjct: 27 SDLVCPEC--AGNLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGA 83
Query: 62 PLNPLLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQ 108
P + GLST I K G S L S K+Q R S +RNL Q
Sbjct: 84 PTTNTMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQ 140
Query: 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT 168
A I M+ LGL T +++ A+ IY++ D+ L GR+ E + AC+Y A RQ PR+
Sbjct: 141 ALGEIDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRS 200
Query: 169 VKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAV 228
+ E V+ K EI R ++V+ L +E+ Y+ RF S L ++++A
Sbjct: 201 LDEIADVSR-VEKNEIARTYRYVVREL------GLEVQPADPESYVPRFASGLDLSDEAE 253
Query: 229 KAAQEAVQKSED 240
A+ +Q +++
Sbjct: 254 HRARALLQNAKE 265
>gi|451996801|gb|EMD89267.1| hypothetical protein COCHEDRAFT_1205430 [Cochliobolus
heterostrophus C5]
Length = 375
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 109/214 (50%), Gaps = 22/214 (10%)
Query: 6 CADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES----------SDH 54
C DCK +V + SAGDTIC CG VL +D SEWR F+N+ +
Sbjct: 38 CPDCKENPPNLVEEFSAGDTICGSCGRVLADRIIDTRSEWRTFSNDGKWRPLTCTNQGND 97
Query: 55 DPVRVGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRN--LIQAFKS 112
DP R+G NPLL G L T I G LS + +S+H N L A+
Sbjct: 98 DPSRIGDAANPLLHGSQLQTEIGFGDGGMRVRDLS----RAHNKSNHDKVNKALQAAYGQ 153
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I+A+ D + + A +YK +D K +G++Q+AI+A C++IACR+ ++ R+ +E
Sbjct: 154 ITALCDSQNISRPTAETAKMLYKMTDDAKLFKGKSQDAIIAGCIFIACRKHDQQRSFREI 213
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMG 206
+ N +KKE+GR K LEA + +S G
Sbjct: 214 FKMTN-VSKKEVGR----TFKVLEAFIQKSQNSG 242
>gi|448396906|ref|ZP_21569354.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445673435|gb|ELZ25996.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 326
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 124/248 (50%), Gaps = 26/248 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++V D G+T+C +CGLV+E SVD EWR F + + ++ RVG P
Sbjct: 31 CPEC--AGQLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAPTTN 87
Query: 66 LLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 88 TMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQALGE 144
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL T +++ A+ IY++ D+ L GR+ E + AC+Y A RQ PR++ E
Sbjct: 145 IDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 204
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ K EI R ++V+ L +E+ Y+ RF S L ++++A A+
Sbjct: 205 ADVSR-VEKNEIARTYRYVVREL------GLEVQPADPESYVPRFASGLELSDEAEHRAR 257
Query: 233 EAVQKSED 240
+Q +++
Sbjct: 258 SLLQNAKE 265
>gi|433592506|ref|YP_007282002.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448334943|ref|ZP_21524096.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|448384407|ref|ZP_21563245.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|433307286|gb|AGB33098.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445618184|gb|ELY71763.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|445658473|gb|ELZ11291.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 326
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 124/251 (49%), Gaps = 26/251 (10%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D C +C +V D G+T+C +CGLV+E SVD EWR F + + ++ RVG P
Sbjct: 28 DLVCPEC--AGNLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAP 84
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQA 109
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 85 TTNTMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQA 141
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
I M+ LGL T +++ A+ IY++ D+ L GR+ E + AC+Y A RQ PR++
Sbjct: 142 LGEIDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSL 201
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVK 229
E V+ K EI R ++V+ L +E+ Y+ RF S L ++++A
Sbjct: 202 DEIADVSR-VEKNEIARTYRYVVREL------GLEVQPADPESYVPRFASGLELSDEAEH 254
Query: 230 AAQEAVQKSED 240
A+ +Q +++
Sbjct: 255 RARSLLQNAKE 265
>gi|448327577|ref|ZP_21516901.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445617824|gb|ELY71416.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 327
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 124/251 (49%), Gaps = 26/251 (10%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D C +C +V D G+T+C +CGLV+E SVD EWR F + + ++ RVG P
Sbjct: 29 DLVCPEC--AGNLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAP 85
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQA 109
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 86 TTNTMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQA 142
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
I M+ LGL T +++ A+ IY++ D+ L GR+ E + AC+Y A RQ PR++
Sbjct: 143 LGEIDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSL 202
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVK 229
E V+ K EI R ++V+ L +E+ Y+ RF S L ++++A
Sbjct: 203 DEIADVSR-VEKNEIARTYRYVVREL------GLEVQPADPESYVPRFASGLELSDEAEH 255
Query: 230 AAQEAVQKSED 240
A+ +Q +++
Sbjct: 256 RARSLLQNAKE 266
>gi|448393759|ref|ZP_21567818.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|445663362|gb|ELZ16114.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 318
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 123/244 (50%), Gaps = 21/244 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T +V D G+ +C ECGLVL +D EWR F + +HD + RVG PL
Sbjct: 21 CPDCETDT-IVHDPDRGERVCEECGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAPLT 77
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G L +L+ R+ + +RNL A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSADKQGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ +Q +RGR+ E + + LY ACR+E+ PR+++E S
Sbjct: 138 RMVSALGVPKPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTS 197
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ ++EIGR +I L+ + + + ++ RFCS L + A E
Sbjct: 198 VSR-VDQREIGRTYRYIADELD------INLEPTNPRQFVPRFCSELDVGKDVETKAVEI 250
Query: 235 VQKS 238
+ ++
Sbjct: 251 IDQT 254
>gi|257052295|ref|YP_003130128.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|335441176|ref|ZP_08561897.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|256691058|gb|ACV11395.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|334888347|gb|EGM26646.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 321
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 118/241 (48%), Gaps = 19/241 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + +V D G+ IC +CGLV+E ++D EWR F N + RVG P
Sbjct: 27 CPECGSDS-LVKDADRGELICEDCGLVVEEGNIDPGPEWRAF-NHQERQEKSRVGAPTTQ 84
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 85 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ D +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 145 MASALGVPRSVREVASVIYRRALDDDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 204
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +EM + Y+ RFCS L ++ + A E +
Sbjct: 205 SR-VERKEIGRTYRYISQEL------GLEMEPVDPKKYVPRFCSELELSEEVQSKANEII 257
Query: 236 Q 236
+
Sbjct: 258 E 258
>gi|160331633|ref|XP_001712523.1| tfIIB [Hemiselmis andersenii]
gi|159765972|gb|ABW98198.1| tfIIB [Hemiselmis andersenii]
Length = 344
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 116/232 (50%), Gaps = 24/232 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DC ++ D GD IC ECGLVL ++++D TSEWR FA++ DP R+G P +P
Sbjct: 22 CTDCGS-ENLLEDKKQGDLICFECGLVLTSHNIDFTSEWRCFADDQRGKDPTRIGDPNHP 80
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSS--HPDRNLIQAFKSISAMSDRLGLV 123
LL T+I+K G + L+ L Q +S+ DR L Q+F I+ ++ L
Sbjct: 81 LLESNS-GTLISKGLRGANN--LNERLATTQNQSNLQKTDRFLTQSFSKINLFLEKNFLF 137
Query: 124 TTIKDRANEIYKKVEDQKPLRG---------RNQEAI--VAACLYIACRQENKPRTVKEF 172
IK+R E++K D LR R E + +AA ++I R E PRT +E
Sbjct: 138 KGIKERVEELFKSYFDYLTLRSDGSRTRYSLRKDETLSSIAASIFIVSRNEGIPRTFREI 197
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTI-HASDYLRRFCSNLGM 223
KKEIG I + L + V++ I + D++ RFCS LG+
Sbjct: 198 YETTK-VPKKEIGSRVRAIERSL-----RGVKISKIRNTEDFISRFCSKLGL 243
>gi|223478727|ref|YP_002582898.1| transcription initiation factor iiB [Thermococcus sp. AM4]
gi|214033953|gb|EEB74779.1| Transcription initiation factor iiB [Thermococcus sp. AM4]
Length = 303
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 125/249 (50%), Gaps = 20/249 (8%)
Query: 1 MADS-YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRV 59
MAD C C TE FD + G+ +C CG VLE +DE EWR F + R
Sbjct: 1 MADKRVCPVCGS-TEFFFDRTRGELVCRVCGYVLEENVIDEGPEWRAFDPDQRARR-ART 58
Query: 60 GGPLNPLLSGGGLSTVIA---KPTAGGS-TELLSGSLGKL---QAR---SSHPDRNLIQA 109
G P+ ++ GLST I K G T + L +L Q R + +RNL A
Sbjct: 59 GAPMTLMIHDKGLSTDIDWRDKDIHGNQITGMYRSKLRRLRMWQRRMRINDAAERNLAFA 118
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
+ M+ ++ L +K+ A +Y+K +K +RGR+ E +V+A LY ACR E PRT+
Sbjct: 119 LSELDRMAAQMRLPRRVKEAAAALYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTL 178
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVK 229
E V+ TKKEIGR+ F+ + G + + DY+ RF LG++++ +
Sbjct: 179 DEIARVSK-VTKKEIGRSYRFMAR------GLGLNLRPTSPIDYVDRFGDALGVSSKTKQ 231
Query: 230 AAQEAVQKS 238
A+E +Q++
Sbjct: 232 RAKEILQEA 240
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 8/118 (6%)
Query: 76 IAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYK 135
+ K G S ++ LG L R + P + D LG+ + K RA EI +
Sbjct: 187 VTKKEIGRSYRFMARGLG-LNLRPTSP-------IDYVDRFGDALGVSSKTKQRAKEILQ 238
Query: 136 KVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
+ + G+ + AA LY+A E + +T +E VA+ T R KE + K
Sbjct: 239 EAIKRGITSGKGPTGLAAAALYVASLLEGEKKTQREVAEVAHVTEVTVRNRYKELVEK 296
>gi|448355065|ref|ZP_21543819.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|448360186|ref|ZP_21548828.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|445636409|gb|ELY89571.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445640136|gb|ELY93226.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 326
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 124/251 (49%), Gaps = 26/251 (10%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D C +C +V D G+T+C +CGLV+E SVD EWR F + + ++ RVG P
Sbjct: 28 DLACPEC--AGNLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAP 84
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQA 109
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 85 TTNTMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQA 141
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
I M+ LGL T +++ A+ IY++ D+ L GR+ E + AC+Y A RQ PR++
Sbjct: 142 LGEIDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSL 201
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVK 229
E V+ K EI R ++V+ L +E+ Y+ RF S L ++++A
Sbjct: 202 DEIADVSR-VEKNEIARTYRYVVREL------GLEVQPADPESYVPRFASGLDLSDEAEH 254
Query: 230 AAQEAVQKSED 240
A+ +Q +++
Sbjct: 255 RARALLQNAKE 265
>gi|284163770|ref|YP_003402049.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|448388030|ref|ZP_21564970.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|284013425|gb|ADB59376.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|445670681|gb|ELZ23278.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 319
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 114/240 (47%), Gaps = 19/240 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T +V G+ +C +CGLV+E ++D EWR F N S RVG P
Sbjct: 27 CDECSDGT-LVTSEDQGELVCDQCGLVVEGSNIDHGPEWRAF-NHSERQSKSRVGAPTTQ 84
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I +S L K Q R D RNL A I
Sbjct: 85 TMHDKGLTTSIDWKNQDAYGRSISADKRSQMRRLRKWQERIRTKDAGERNLQFALSEIDR 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A IY++ D+ +RGR+ E + + LY ACR E PR+++E +V
Sbjct: 145 MASSLGIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEVAAV 204
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR ++ + L S+EM + Y RFCS L ++ + A E +
Sbjct: 205 SR-VERKEIGRTYRYVAQEL------SLEMEPVDPKQYTPRFCSELDLSEEVQAKATEII 257
>gi|448292233|ref|ZP_21482893.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448541523|ref|ZP_21624239.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448549791|ref|ZP_21628396.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448555098|ref|ZP_21631138.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445573033|gb|ELY27560.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445707848|gb|ELZ59696.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445712839|gb|ELZ64620.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445717843|gb|ELZ69546.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
Length = 318
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 125/248 (50%), Gaps = 25/248 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + +V D G+T+C +CGLV+E +D EWR F N S + RVG P
Sbjct: 22 CPECGSES-LVSDTEHGETVCDDCGLVVEEDEIDHGPEWRAF-NSSEKDEKSRVGAPTTN 79
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 80 MMHDKGLSTNIGWQNKDAYGRS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 136
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D L GR+ E + + LY A R PR++ E
Sbjct: 137 IDRMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAGTPRSLDEI 196
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
SV+ K EI R ++V+ L S+E+ Y+ RF S+LG+++++ + A+
Sbjct: 197 TSVSR-VEKDEIARTYRYVVREL------SLEIKPADPEQYVPRFASDLGLSDESERRAR 249
Query: 233 EAVQKSED 240
+ ++ +++
Sbjct: 250 QLLKNAKE 257
>gi|292655211|ref|YP_003535108.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448596702|ref|ZP_21653840.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|291371352|gb|ADE03579.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445740583|gb|ELZ92088.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 332
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 125/248 (50%), Gaps = 25/248 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + +V D G+T+C +CGLV+E +D EWR F N S + RVG P
Sbjct: 36 CPECGSES-LVSDTEHGETVCDDCGLVVEEDEIDHGPEWRAF-NSSEKDEKSRVGAPTTN 93
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 94 MMHDKGLSTNIGWQNKDAYGRS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 150
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D L GR+ E + + LY A R PR++ E
Sbjct: 151 IDRMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAGTPRSLDEI 210
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
SV+ K EI R ++V+ L S+E+ Y+ RF S+LG+++++ + A+
Sbjct: 211 TSVSR-VEKDEIARTYRYVVREL------SLEIKPADPEQYVPRFASDLGLSDESERRAR 263
Query: 233 EAVQKSED 240
+ ++ +++
Sbjct: 264 QLLKNAKE 271
>gi|348673371|gb|EGZ13190.1| hypothetical protein PHYSODRAFT_361176 [Phytophthora sojae]
Length = 308
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 128/250 (51%), Gaps = 23/250 (9%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV---RVGG 61
+C +C +VV D SAGD +C CG++L +D++ EWR FAN+ DP RVG
Sbjct: 9 HCRECGS-ADVVTDFSAGDVVCRSCGMILGERIIDDSPEWRTFANDDRGGDPAAKSRVGD 67
Query: 62 PLNPLLSGGGLST--VIAKPTAGGSTELLSGSLGKLQAR-----SSHPDRNLIQAFKSIS 114
+ L+ LST V K + GG+ G G R S R + + I
Sbjct: 68 VADARLNSLSLSTYLVDTKKSGGGA----DGEPGHKHKRPNISSDSAKVRRMQRNMARIQ 123
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQK-PLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
++D L L I + A ++Y + E Q +RG +E++ A L+IACR+ R++KEF
Sbjct: 124 EVADYLSLPKNIVEIALDVYAEAEKQGVNMRGPERESMAVAVLFIACRKAGNARSLKEF- 182
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
A+G K+ IG++ + + L+ E+ Q+ +Y++RFCS LG+ N+ A
Sbjct: 183 EEASGVPKRRIGKSFMSLQRRLDLEVKQA------STEEYVQRFCSRLGLPNKTQMIAHA 236
Query: 234 AVQKSEDLDI 243
+K++ L++
Sbjct: 237 VAKKADSLEL 246
>gi|397775888|ref|YP_006543434.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448342843|ref|ZP_21531788.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|397684981|gb|AFO59358.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445624676|gb|ELY78052.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 326
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 124/251 (49%), Gaps = 26/251 (10%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D C +C +V D G+T+C +CGLV+E SVD EWR F + + ++ RVG P
Sbjct: 28 DLVCPEC--AGNLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAP 84
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQA 109
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 85 TTNTMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQA 141
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
I M+ LGL T +++ A+ IY++ D+ L GR+ E + AC+Y A RQ PR++
Sbjct: 142 LGEIDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSL 201
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVK 229
E V+ K EI R ++V+ L +E+ Y+ RF S L ++++A
Sbjct: 202 DEIADVSR-VEKNEIARTYRYVVREL------GLEVQPADPESYVPRFASGLELSDEAEH 254
Query: 230 AAQEAVQKSED 240
A+ +Q +++
Sbjct: 255 RARSLLQNAKE 265
>gi|289582455|ref|YP_003480921.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448282123|ref|ZP_21473413.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|289532008|gb|ADD06359.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445577053|gb|ELY31498.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
Length = 326
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 124/251 (49%), Gaps = 26/251 (10%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D C +C +V D G+T+C +CGLV+E SVD EWR F + + ++ RVG P
Sbjct: 28 DLACPEC--AGNLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAP 84
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQA 109
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 85 TTNTMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQA 141
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
I M+ LGL T +++ A+ IY++ D+ L GR+ E + AC+Y A RQ PR++
Sbjct: 142 LGEIDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSL 201
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVK 229
E V+ K EI R ++V+ L +E+ Y+ RF S L ++++A
Sbjct: 202 DEIADVSR-VEKNEIARTYRYVVREL------GLEVQPADPESYVPRFASGLDLSDEAEH 254
Query: 230 AAQEAVQKSED 240
A+ +Q +++
Sbjct: 255 RARALLQNAKE 265
>gi|448399559|ref|ZP_21570819.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445668576|gb|ELZ21203.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 319
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 123/246 (50%), Gaps = 21/246 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T +V D G+ +C ECGLVL +D EWR F + +HD + RVG PL
Sbjct: 23 CPDCETET-IVHDPDRGERVCEECGLVLTEDPIDYGPEWRAF--NAQEHDNLSRVGAPLT 79
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G L +L+ R+ + +RNL A I
Sbjct: 80 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 139
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ +Q +RGR+ E + + LY ACR+E PR+++E S
Sbjct: 140 RMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEGIPRSLEEVTS 199
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ ++EIGR +I L+ + + + ++ RFCS L + A E
Sbjct: 200 VSR-VDQREIGRTYRYIADELD------INLEPTNPRQFVPRFCSELDVGKDVETKAIEI 252
Query: 235 VQKSED 240
+ ++ D
Sbjct: 253 IDQTTD 258
>gi|448311268|ref|ZP_21501032.1| transcription factor TFIIB cyclin-like protein [Natronolimnobius
innermongolicus JCM 12255]
gi|445605096|gb|ELY59027.1| transcription factor TFIIB cyclin-like protein [Natronolimnobius
innermongolicus JCM 12255]
Length = 329
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 124/251 (49%), Gaps = 26/251 (10%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D C +C +V D G+T+C +CGLV+E SVD EWR F + + ++ RVG P
Sbjct: 31 DLACPEC--AGNLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DATEKNEKSRVGAP 87
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQA 109
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 88 TTNTMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQA 144
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
I M+ LGL T +++ A+ IY++ D+ L GR+ E + AC+Y A RQ PR++
Sbjct: 145 LGEIDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSL 204
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVK 229
E V+ K EI R ++V+ L +E+ Y+ RF S L ++++A
Sbjct: 205 DEIADVSR-VEKNEIARTYRYVVREL------GLEVQPADPESYVPRFASGLELSDEAEH 257
Query: 230 AAQEAVQKSED 240
A+ +Q +++
Sbjct: 258 RARALLQNAKE 268
>gi|448338899|ref|ZP_21527933.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|448344427|ref|ZP_21533338.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445621222|gb|ELY74700.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445638546|gb|ELY91674.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 326
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 124/251 (49%), Gaps = 26/251 (10%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D C +C +V D G+T+C +CGLV+E SVD EWR F + + ++ RVG P
Sbjct: 28 DLACPEC--AGNLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAP 84
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQA 109
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 85 TTNTMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQA 141
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
I M+ LGL T +++ A+ IY++ D+ L GR+ E + AC+Y A RQ PR++
Sbjct: 142 LGEIDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSL 201
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVK 229
E V+ K EI R ++V+ L +E+ Y+ RF S L ++++A
Sbjct: 202 DEIADVSR-VEKNEIARTYRYVVREL------GLEVQPADPESYVPRFASGLELSDEAEH 254
Query: 230 AAQEAVQKSED 240
A+ +Q +++
Sbjct: 255 RARSLLQNAKE 265
>gi|240103255|ref|YP_002959564.1| transcription initiation factor IIB [Thermococcus gammatolerans
EJ3]
gi|239910809|gb|ACS33700.1| Transcription initiation factor TFIIB (tfb) [Thermococcus
gammatolerans EJ3]
Length = 300
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 119/231 (51%), Gaps = 12/231 (5%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
TE ++D S G+ +C CG V+E VD EWR F + S R G P + LL GL
Sbjct: 13 TEFIYDPSRGEVVCKVCGYVIEENVVDMGPEWRAF-DASQREKRARAGAPESILLHDKGL 71
Query: 73 STVIA--KPTAGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
ST I + G E + L K Q+R S +RNL A + ++ L L ++
Sbjct: 72 STDIGIDRSLTGLMREKMY-RLRKWQSRLRVSDAAERNLAFALSELDRLASNLRLPRHVE 130
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
+ A +Y++ + +RGR+ E+++AAC+Y ACR PRT+ E V+ KKEIGR+
Sbjct: 131 EEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIAEVSR-VDKKEIGRS 189
Query: 188 KEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKS 238
FI +HL + + +DY+ +F LG++ + + A E ++++
Sbjct: 190 FRFIARHLNLTPKKLF----VKPTDYVSKFADELGLSEKVRRRAIELLEEA 236
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ +S +D LGL ++ RA E+ ++ ++ G++ +VAA LYIA
Sbjct: 201 PKKLFVKPTDYVSKFADELGLSEKVRRRAIELLEEAYEKGLTSGKSPAGLVAAALYIAGI 260
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E + RT +E VA T R KE I K
Sbjct: 261 MEGERRTQREVAEVARVTEVTVRNRYKELIEK 292
>gi|315230862|ref|YP_004071298.1| transcription initiation factor B [Thermococcus barophilus MP]
gi|315183890|gb|ADT84075.1| transcription initiation factor B [Thermococcus barophilus MP]
Length = 299
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 122/236 (51%), Gaps = 22/236 (9%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
TE ++D G+ +CS+CG V+E VD EWR F + S R G P + LL GL
Sbjct: 13 TEFIYDPEHGEIVCSKCGFVIEENIVDMGPEWRAF-DASQREKRSRTGAPESILLHDKGL 71
Query: 73 STVIAKPTAGGSTELLSG-------SLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGL 122
ST I GS ++G L K Q+R S +RNL A + ++ +L L
Sbjct: 72 STDI------GSDRNITGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLKL 125
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+++ A +Y++ + +RGR+ E+++AAC+Y ACR PRT+ E +A KK
Sbjct: 126 PKHVEEEAARLYREAVRRGLIRGRSIESVIAACVYAACRLLKIPRTLDEIADIAR-VDKK 184
Query: 183 EIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKS 238
EIGR+ FI ++L + + +DY+ +F LG++ + + A E ++++
Sbjct: 185 EIGRSFRFIARNLNLTPKKLF----VKPTDYVNKFADELGLSEKVRRRAIELLEEA 236
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LGL ++ RA E+ ++ ++ G++ +VAA LYIA
Sbjct: 201 PKKLFVKPTDYVNKFADELGLSEKVRRRAIELLEEAYNRGLTSGKSPAGLVAAALYIASL 260
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E + RT +E VA T R KE + K
Sbjct: 261 LEGEKRTQREVAEVARVTEVTVRNRYKELVEK 292
>gi|284164125|ref|YP_003402404.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|284013780|gb|ADB59731.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
Length = 329
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 123/248 (49%), Gaps = 26/248 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+T+C +CGLV+E SVD EWR F + + ++ RVG P
Sbjct: 34 CPEC--AGNLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DATEKNEKSRVGAPTTN 90
Query: 66 LLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 91 TMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQALGE 147
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL T +++ A+ IY++ D+ L GR+ E + AC+Y A RQ PR++ E
Sbjct: 148 IDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 207
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ K EI R ++V+ L +E+ Y+ RF S L ++++A A+
Sbjct: 208 ADVSR-VEKNEIARTYRYVVREL------GLEVQPADPESYVPRFASGLDLSDEAEHRAR 260
Query: 233 EAVQKSED 240
+Q +++
Sbjct: 261 ALLQNAKE 268
>gi|325959508|ref|YP_004290974.1| transcription initiation factor iiB [Methanobacterium sp. AL-21]
gi|325330940|gb|ADZ10002.1| Transcription initiation factor IIB [Methanobacterium sp. AL-21]
Length = 325
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 122/246 (49%), Gaps = 19/246 (7%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
++ C +C +++ D G+ C CGLV++ +D EWR F NE D RVG P
Sbjct: 26 ETRCPECGS-EQIINDPERGEVACGACGLVIDDNIMDMGPEWRAFDNEQRDKR-TRVGAP 83
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKS 112
+ + GLST+I K G + + L K Q + S +RNL A
Sbjct: 84 MTYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSE 143
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
+ S RLGL ++++ A+ +Y+ + K +RGR+ E +VAA LY ACR+ N PRT+ E
Sbjct: 144 LDRDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRKCNVPRTLDEI 203
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ KKE+GR F+ + L ++++ DY+ RF S L ++ + A
Sbjct: 204 AEVSR-VGKKEVGRTYRFLTREL------NIKLPPTSPVDYIPRFASELNLSGEVQSKAI 256
Query: 233 EAVQKS 238
E + +
Sbjct: 257 EIINNA 262
>gi|448394859|ref|ZP_21568456.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|445661995|gb|ELZ14770.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 329
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 123/248 (49%), Gaps = 26/248 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+T+C +CGLV+E SVD EWR F + + ++ RVG P
Sbjct: 34 CPEC--AGNLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DATEKNEKSRVGAPTTN 90
Query: 66 LLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 91 TMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQALGE 147
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL T +++ A+ IY++ D+ L GR+ E + AC+Y A RQ PR++ E
Sbjct: 148 IDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 207
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ K EI R ++V+ L +E+ Y+ RF S L ++++A A+
Sbjct: 208 ADVSR-VEKNEIARTYRYVVREL------GLEVQPADPESYVPRFASGLDLSDEAEHRAR 260
Query: 233 EAVQKSED 240
+Q +++
Sbjct: 261 ALLQNAKE 268
>gi|399949697|gb|AFP65355.1| TATA binding protein of transcription factor IID [Chroomonas
mesostigmatica CCMP1168]
Length = 343
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 112/220 (50%), Gaps = 23/220 (10%)
Query: 18 DHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA 77
D GD +C ECG+VL + VD TSEWRIF+ ++ DP+R+G PL+ LL T+I+
Sbjct: 32 DMKQGDIVCKECGMVLTGHIVDFTSEWRIFSEDNKKSDPIRIGDPLHELLEKNP-GTLIS 90
Query: 78 KPTAGGSTELLSGSLGKLQARSS--HPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYK 135
K G + +L+ L K Q R + DR L Q F I +++ L IK R E +K
Sbjct: 91 KGLKG--SNILNEKLLKTQNRGTVQKTDRFLTQVFSKIGLFLEKICLFMGIKKRVEEFFK 148
Query: 136 KVEDQKPLRG---------RNQEAI--VAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
D LR R E + +AA ++I R E PRT KE S A G +KK +
Sbjct: 149 LYFDYLTLRTDGTRSRYSLRKNETVSSIAASIFIVSRNEKIPRTFKEI-SEATGVSKKAL 207
Query: 185 GRAKEFIVKHLEAEMGQSVEMGTIHAS-DYLRRFCSNLGM 223
V+ +E + + + +H + D++ RFCS LG+
Sbjct: 208 SAR----VRAIERSL-RGTNISKLHNTDDFVSRFCSKLGL 242
>gi|389860462|ref|YP_006362701.1| transcription initiation factor IIB [Thermogladius cellulolyticus
1633]
gi|388525365|gb|AFK50563.1| transcription initiation factor IIB [Thermogladius cellulolyticus
1633]
Length = 316
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 120/233 (51%), Gaps = 17/233 (7%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
+++FDH G+ +C E G V+E +DE +EWR F E + R GGP+ + G +
Sbjct: 26 KIIFDHGKGEYVCLETGEVIEERVIDERAEWRAFTPEERERR-ARTGGPITGTVHDMGFA 84
Query: 74 TVI--AKPTAGGSTELLSGS----LGKLQARS---SHPDRNLIQAFKSISAMSDRLGLVT 124
T I A A G + + L K QAR+ S DRNL QA + +++ L L T
Sbjct: 85 TSIDYADKDASGRRIIEKKAQLQKLRKWQARTRIQSSVDRNLAQALNELERIAELLNLPT 144
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+++ A IY+ ++ +RGR+ E+++AA +Y+ACR+ PR++ E +KEI
Sbjct: 145 HVREEAARIYRMAVEKGLVRGRSIESVIAAAVYVACREARVPRSLDEITKYTR-IPRKEI 203
Query: 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQK 237
R +++ L +++ + D++ R LG++ + +K A E + K
Sbjct: 204 ARCYRLLLREL------GIKVTAVDPIDFIPRIAHALGLSGEIIKNATEILNK 250
>gi|350525782|ref|YP_004885404.1| transcription initiation factor B [Thermococcus sp. AM4]
gi|345650601|gb|AEO13966.1| Transcription initiation factor B [Thermococcus sp. AM4]
Length = 300
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 119/231 (51%), Gaps = 12/231 (5%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
TE ++D S G+ +C CG V+E VD EWR F + S R G P + LL GL
Sbjct: 13 TEFIYDPSRGEVVCKVCGYVIEENVVDMGPEWRAF-DASQREKRARAGAPESILLHDKGL 71
Query: 73 STVIA--KPTAGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
ST I + G E + L K Q+R S +RNL A + ++ L L ++
Sbjct: 72 STDIGIDRSLTGLMREKMY-RLRKWQSRLRVSDAAERNLAFALSELDRLASNLRLPRHVE 130
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
+ A +Y++ + +RGR+ E+++AAC+Y ACR PRT+ E V+ KKEIGR+
Sbjct: 131 EEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIAEVSR-VDKKEIGRS 189
Query: 188 KEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKS 238
FI +HL + + +DY+ +F LG++ + + A E ++++
Sbjct: 190 FRFIARHLNLTPKKLF----VKPTDYVSKFADELGLSEKVRRRAIELLEEA 236
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ +S +D LGL ++ RA E+ ++ ++ G++ +VAA LYIA
Sbjct: 201 PKKLFVKPTDYVSKFADELGLSEKVRRRAIELLEEAYEKGLTSGKSPAGLVAAALYIAGI 260
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK-HLEAEMG 200
E + RT +E VA T R KE I K +L+ +G
Sbjct: 261 MEGERRTQREVAEVARVTEVTVRNRYKELIEKLNLKVPIG 300
>gi|448439368|ref|ZP_21588009.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445691419|gb|ELZ43610.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 326
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 122/241 (50%), Gaps = 26/241 (10%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
+C +C ++ D G+T+C +CGLV+E +D EWR F ++ D + RVG P
Sbjct: 30 HCPECG--GQLATDTEHGETVCVDCGLVVEEDEIDRGPEWRAFDSKEKD-EKSRVGAPTT 86
Query: 65 PLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFK 111
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 87 NMMHDKGLSTNIGWQDKDAYGKS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALG 143
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
I M+ LGL +++ A+ IY++ D+ L GR+ E + A LY A RQ PR++ E
Sbjct: 144 EIDRMASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDE 203
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
+V+ K EI R ++V+ L+ +E+ Y+ RF S+LG++++A + A
Sbjct: 204 ISAVSR-VEKDEIARTYRYVVRELK------LEIQPADPESYVPRFASDLGLSDEAERRA 256
Query: 232 Q 232
+
Sbjct: 257 R 257
>gi|325187852|emb|CCA22395.1| transcription initiation factor IIB putative [Albugo laibachii
Nc14]
Length = 303
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 126/243 (51%), Gaps = 14/243 (5%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV---RVGGP 62
C DC ++V D+ AGD +C CG+VL VD+T EWR F+N+ D RVG
Sbjct: 8 CVDCGS-DDIVTDYGAGDVVCRSCGIVLGERIVDDTPEWRTFSNDDRGGDATSKSRVGQV 66
Query: 63 LNPLLSGGGLSTVIAKPTA-GGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLG 121
+ + L+TV+ T+ + + + L KL S+H R + I +S+ L
Sbjct: 67 EDQGIEDATLTTVLVDSTSEKNNGKAQTAMLPKLNKESAHV-RRMQNMTNRIREISETLS 125
Query: 122 LVTTIKDRANEIYKKVEDQKPL-RGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
L I + A ++Y++ E + L RG +E++ AA ++IACRQ RT+KE A+G
Sbjct: 126 LPKIILEVAMQVYQEAERKGTLMRGPEKESMAAAVIFIACRQAGHARTLKEL-EGASGVM 184
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
KK+IG++ + K L + Q+ ++Y+ RFCS LG+ + A + +K++
Sbjct: 185 KKKIGKSFLILKKQLNFDFRQAT------TTNYVERFCSRLGLPAKTQVIAHDVAKKAQT 238
Query: 241 LDI 243
L +
Sbjct: 239 LGL 241
>gi|359417747|ref|ZP_09209816.1| transcription initiation factor IIB [Candidatus Haloredivivus sp.
G17]
gi|358031840|gb|EHK00675.1| transcription initiation factor IIB [Candidatus Haloredivivus sp.
G17]
Length = 306
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 127/250 (50%), Gaps = 27/250 (10%)
Query: 6 CADC--KRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
C +C +R E D + G+ IC ECG V++ +DE++EWR F N R G PL
Sbjct: 58 CPECGSQRFEE---DSAKGELICIECGFVMDEDRIDESAEWRAF-NAEEKEKKARAGQPL 113
Query: 64 NPLLSGGGLSTVIAKPTAGGSTEL--LSGS-------LGKLQAR-SSHPDRNLIQAFKSI 113
G+ST I K GS EL +SG+ L K R + DRNL A +
Sbjct: 114 TYTKHDMGVSTEIGK----GSGELYKVSGNKRAQYYRLRKWHKRLTKSKDRNLGFALSEL 169
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
++M L L ++ + +Y+K DQ +RGR+ E+I++A +YI R++ PRT+ E
Sbjct: 170 NSMISNLNLPESVHEETARLYEKAVDQGLVRGRSMESIISALIYIVARKQGTPRTLDEI- 228
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
S A+G K+EIGRA ++ + L + + DY+ RF L ++ + A+
Sbjct: 229 SDASGIEKREIGRAYRYVAREL------GLRILPAKPQDYVPRFAGKLQLSGEVQARARN 282
Query: 234 AVQKSEDLDI 243
++++ + D+
Sbjct: 283 ILKEARERDL 292
>gi|435846022|ref|YP_007308272.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433672290|gb|AGB36482.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 326
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 126/252 (50%), Gaps = 26/252 (10%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGG 61
+D C +C ++V D G+T+C +CGLV+E SVD EWR F + + ++ RVG
Sbjct: 27 SDVVCPEC--AGQLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DATEKNEKSRVGA 83
Query: 62 PLNPLLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQ 108
P + GLST I K G S L S K+Q R S +RNL Q
Sbjct: 84 PTTNTMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQ 140
Query: 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT 168
A I M+ LGL T +++ A+ IY++ ++ L GR+ E + AC+Y A RQ PR+
Sbjct: 141 ALGEIDRMASALGLPTNVRETASVIYRRALEEDLLPGRSIEGVSTACVYAAARQAGVPRS 200
Query: 169 VKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAV 228
+ E V+ K EI R ++V+ L +E+ Y+ RF S L ++++A
Sbjct: 201 LDEIADVSR-VEKNEIARTYRYVVREL------GLEVQPADPESYVPRFASGLELSDEAE 253
Query: 229 KAAQEAVQKSED 240
A+ +Q +++
Sbjct: 254 HRARGLLQNAKE 265
>gi|448363683|ref|ZP_21552280.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
gi|445645786|gb|ELY98783.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
Length = 326
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 125/252 (49%), Gaps = 26/252 (10%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGG 61
+D C +C +V D G+T+C +CGLV+E SVD EWR F + + ++ RVG
Sbjct: 27 SDLVCPEC--AGNLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGA 83
Query: 62 PLNPLLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQ 108
P + GLST I K G S L S K+Q R S +RNL Q
Sbjct: 84 PTTNTMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQ 140
Query: 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT 168
A I M+ +GL T +++ A+ IY++ D+ L GR+ E + AC+Y A RQ PR+
Sbjct: 141 ALGEIDRMASAVGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRS 200
Query: 169 VKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAV 228
+ E V+ K EI R ++V+ L +E+ Y+ RF S L ++++A
Sbjct: 201 LDEIADVSR-VEKNEIARTYRYVVREL------GLEVQPADPESYVPRFASGLDLSDEAE 253
Query: 229 KAAQEAVQKSED 240
A+ +Q +++
Sbjct: 254 HRARALLQNAKE 265
>gi|448586312|ref|ZP_21648386.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445724967|gb|ELZ76593.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
Length = 318
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 124/248 (50%), Gaps = 25/248 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + +V D G+T+C +CGLV+E +D EWR F N S RVG P
Sbjct: 22 CPECDSES-LVADSEHGETVCEDCGLVVEENEIDHGPEWRAF-NSSEKDQKSRVGAPTTN 79
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 80 MMHDKGLSTNIGWQNKDAYGRS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 136
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D L GR+ E + + LY A R + PR++ E
Sbjct: 137 IDRMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMADTPRSLDEI 196
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
SV+ K EI R ++V+ L+ +E+ Y+ RF S LG+++++ + A+
Sbjct: 197 TSVSR-VEKDEIARTYRYVVRELK------LEIKPADPEQYVPRFASELGLSDESERRAR 249
Query: 233 EAVQKSED 240
+ ++ +++
Sbjct: 250 QLLKNAKE 257
>gi|55378612|ref|YP_136462.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448637427|ref|ZP_21675665.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|448652038|ref|ZP_21681051.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|448681127|ref|ZP_21691273.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|448684938|ref|ZP_21693025.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|55231337|gb|AAV46756.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445764274|gb|EMA15429.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445768185|gb|EMA19272.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445769441|gb|EMA20515.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|445782869|gb|EMA33710.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 321
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 120/245 (48%), Gaps = 20/245 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+T+C +CGLV+E+ +D EWR F + D + RVG P
Sbjct: 26 CPECS--GSLVIDDEHGETVCEDCGLVVESDEIDRGPEWRAFDSSEKD-EKSRVGAPTTN 82
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFKSISA 115
++ GLST I LSG L K R +RNL QA I
Sbjct: 83 MMHDKGLSTNIDWRDKDAYGNSLSGKQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 142
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL +++ A+ IY++ D+ L GR+ E + A +Y A RQ PR++ E V
Sbjct: 143 MASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASVYAAARQAGVPRSLDEITEV 202
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ K EI R ++V+ L S+E+ Y+ RF S+L ++++A A++ +
Sbjct: 203 SR-VEKSEIARTYRYVVREL------SLEVRPADPESYVPRFASSLELSDEAEHRARQLL 255
Query: 236 QKSED 240
Q +++
Sbjct: 256 QNAKE 260
>gi|448571794|ref|ZP_21639968.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445721761|gb|ELZ73427.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
Length = 318
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 124/248 (50%), Gaps = 25/248 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + +V D G+T+C +CGLV+E +D EWR F N S + RVG P
Sbjct: 22 CPECGSES-LVSDTEHGETVCDDCGLVVEEDEIDHGPEWRAF-NSSEKDEKSRVGAPTTN 79
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 80 MMHDKGLSTNIGWQNKDAYGRS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 136
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D L GR+ E + + LY A R PR++ E
Sbjct: 137 IDRMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAGTPRSLDEI 196
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
SV+ K EI R ++V+ L S+E+ Y+ RF S LG+++++ + A+
Sbjct: 197 TSVSR-VEKDEIARTYRYVVREL------SLEIKPADPEQYVPRFASELGLSDESERRAR 249
Query: 233 EAVQKSED 240
+ ++ +++
Sbjct: 250 QLLKNAKE 257
>gi|344212646|ref|YP_004796966.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|448631082|ref|ZP_21673537.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|448671125|ref|ZP_21687117.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|343784001|gb|AEM57978.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|445755456|gb|EMA06846.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445766207|gb|EMA17341.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 321
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 120/245 (48%), Gaps = 20/245 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+T+C +CGLV+E+ +D EWR F + D + RVG P
Sbjct: 26 CPECS--GSLVIDDEHGETVCEDCGLVVESDEIDRGPEWRAFDSSEKD-EKSRVGAPTTN 82
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFKSISA 115
++ GLST I LSG L K R +RNL QA I
Sbjct: 83 MMHDKGLSTNIDWRDKDAYGNSLSGKQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 142
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL +++ A+ IY++ D+ L GR+ E + A +Y A RQ PR++ E V
Sbjct: 143 MASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASVYAAARQAGVPRSLDEITEV 202
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ K EI R ++V+ L S+E+ Y+ RF S+L ++++A A++ +
Sbjct: 203 SR-VEKSEIARTYRYVVREL------SLEVRPADPESYVPRFASSLELSDEAEHRARQLL 255
Query: 236 QKSED 240
Q +++
Sbjct: 256 QNAKE 260
>gi|448318045|ref|ZP_21507583.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
gi|445600803|gb|ELY54805.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
Length = 319
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 121/244 (49%), Gaps = 21/244 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T +V D G+ +C ECGLVL +D EWR F + +HD + RVG PL
Sbjct: 23 CPDCETET-IVHDPDRGERVCEECGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAPLT 79
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G L +L+ R+ + +RNL A I
Sbjct: 80 QSMHDRGLTTTIDWRNRDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 139
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ DQ +RGR+ E + + LY ACR+E PR+++E
Sbjct: 140 RMVSALGVPKPVKETASVIYRQALDQDLIRGRSIEGVATSALYTACRKEGIPRSLEEVTG 199
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ ++EIGR +I L+ + + + ++ RFCS L + A E
Sbjct: 200 VSR-VDQREIGRTYRYIADELD------INLEPTNPRQFVPRFCSELDVDKNVESKAIEI 252
Query: 235 VQKS 238
+ ++
Sbjct: 253 IDET 256
>gi|399574686|ref|ZP_10768445.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399240518|gb|EJN61443.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 317
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 117/240 (48%), Gaps = 19/240 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T+++ D G+ +C++CGLV++ S+D EWR F N S RVG P+
Sbjct: 24 CPECDS-TDIITDADQGELVCNDCGLVIDERSIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A I
Sbjct: 82 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ ++ +RGR+ E + + LY ACRQE PR++ E V
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVAEV 201
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +E+ + ++ RF S L ++ + A E +
Sbjct: 202 SR-VPQKEIGRTYRYISQEL------GLELKPVDPKQFVPRFASALELSEEVQAKAVEII 254
>gi|448602605|ref|ZP_21656540.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|448625071|ref|ZP_21670838.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445746957|gb|ELZ98414.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445748833|gb|EMA00279.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 318
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 125/248 (50%), Gaps = 25/248 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + +V D G+T+C +CGLV+E +D EWR F N S RVG P
Sbjct: 22 CPECGSES-LVSDTEHGETVCDDCGLVVEENEIDHGPEWRAF-NSSEKDQKSRVGAPTTN 79
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 80 MMHDKGLSTNIGWQNKDAYGRS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 136
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D L GR+ E + + LY A R + PR++ E
Sbjct: 137 IDRMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMADTPRSLDEI 196
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
SV+ K EI R ++V+ L+ +E+ Y+ RF S+LG+++++ + A+
Sbjct: 197 TSVSR-VEKDEIARTYRYVVRELK------LEIKPADPEQYVPRFASDLGLSDESERRAR 249
Query: 233 EAVQKSED 240
+ ++ +++
Sbjct: 250 QLLKNAKE 257
>gi|335436571|ref|ZP_08559364.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334897534|gb|EGM35665.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 323
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 124/246 (50%), Gaps = 26/246 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++V D G+T+C+ECGLV+E +D EWR F + D RVG P
Sbjct: 28 CPECG--GDLVTDSERGETVCAECGLVVEEDEIDPGPEWRAFDAKEKDQKS-RVGAPTTN 84
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 85 MMHDKGLSTNIGWQNKDAYGNS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 141
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D+ L GR+ E + A LY A RQ PR++ E
Sbjct: 142 IDRMASALGLPENVRETASVIYRRALDENLLPGRSIEGVSTASLYAAARQAGNPRSLDEI 201
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
+V+ K E+ R ++V+ L ++E+ + Y+ RF S+L ++ +A + A+
Sbjct: 202 DNVSR-VEKDEVARTYRYVVREL------NLEVKPADPTSYVPRFASDLDLSEEAERHAR 254
Query: 233 EAVQKS 238
+ ++ +
Sbjct: 255 DLLENA 260
>gi|15790009|ref|NP_279833.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235732|ref|YP_001688932.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195245|sp|Q9HR45.1|TF2B4_HALSA RecName: Full=Transcription initiation factor IIB 4; Short=TFIIB 4
gi|10580433|gb|AAG19313.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726798|emb|CAP13584.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 328
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 111/232 (47%), Gaps = 20/232 (8%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D C +C ++V D G+T C ECGLV+E +D EWR F + D + RVG P
Sbjct: 29 DHGCPECN--GDLVTDEDRGETTCGECGLVVEEDGIDHGPEWRAFNAQEQD-EKSRVGAP 85
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKS 112
++ GLST I LSG + R + +RNL QA
Sbjct: 86 TTNMMHDKGLSTNIGWQDKDAYGNTLSGRQRRKMQRLRKWNERFRTRNSKERNLKQALGE 145
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ GL ++++ A+ IY++ + L GR+ E + + LY A RQ N PR++ E
Sbjct: 146 IERMASAFGLPDSVRETASVIYRRALGEDLLPGRSIEGVATSALYAAARQANTPRSLDEV 205
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMT 224
SV+ + EI R ++ + L S+E+ + Y+ RFCS+L ++
Sbjct: 206 ASVSR-VDRGEIARTYRYVAREL------SLEVAPTDPASYVPRFCSDLELS 250
>gi|448323082|ref|ZP_21512547.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
gi|445600711|gb|ELY54717.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
Length = 319
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 124/246 (50%), Gaps = 21/246 (8%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGP 62
+ C DC+ T +V D G+ +C ECGLVL +D EWR F + +HD + RVG P
Sbjct: 21 ALCPDCETET-IVHDPDRGERVCGECGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAP 77
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKS 112
L + GL+T I + +S G L +L+ R+ + +RNL A
Sbjct: 78 LTQSMHDRGLTTTIDWRNRDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSE 137
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M LG+ +K+ A+ IY++ +Q +RGR+ E + + LY ACR+E+ PR+++E
Sbjct: 138 IDRMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEV 197
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
+V+ ++EIGR +I L+ + + + ++ RFCS L + A
Sbjct: 198 TAVSR-VDQREIGRTYRYIADELD------INLEPTNPRQFVPRFCSELDVDTHVESKAI 250
Query: 233 EAVQKS 238
E + ++
Sbjct: 251 EIIDET 256
>gi|435848670|ref|YP_007310920.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433674938|gb|AGB39130.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 319
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 122/244 (50%), Gaps = 21/244 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T +V D G+ +C ECGLVL +D EWR F + +HD + RVG PL
Sbjct: 23 CPDCETET-IVHDPDRGERVCEECGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAPLT 79
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G L +L+ R+ + +RNL A I
Sbjct: 80 QSMHDRGLTTTIDWRNRDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 139
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ DQ +RGR+ E + + LY ACR+E PR+++E +
Sbjct: 140 RMVSALGVPKPVKETASVIYRQALDQDLIRGRSIEGVATSALYTACRKEGIPRSLEEVTA 199
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ ++EIGR ++ L+ + + + ++ RFCS L + A E
Sbjct: 200 VSR-VDQREIGRTYRYVADELD------INLEPTNPRQFVPRFCSELDVDKDVESKAIEI 252
Query: 235 VQKS 238
+ ++
Sbjct: 253 IDET 256
>gi|448352225|ref|ZP_21541016.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|448365467|ref|ZP_21553847.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
gi|445631605|gb|ELY84834.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|445655006|gb|ELZ07853.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
Length = 317
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 124/244 (50%), Gaps = 21/244 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T ++ D G+ +C ECGLVL +D EWR F + +HD + RVG PL
Sbjct: 21 CPDCETET-IIHDPDRGERVCGECGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAPLT 77
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G L +L+ R+ + +RNL A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ +Q +RGR+ E + + LY ACR+E PR+++E S
Sbjct: 138 RMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEGIPRSLEEVTS 197
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ ++EIGR +I L+ + + + ++ RFCS L ++ A +
Sbjct: 198 VSR-VDQREIGRTYRYIADELD------INLEPTNPRQFVPRFCSELDVSKAVETKAVDI 250
Query: 235 VQKS 238
++++
Sbjct: 251 IEQT 254
>gi|399575166|ref|ZP_10768924.1| hypothetical protein HSB1_09630 [Halogranum salarium B-1]
gi|399239434|gb|EJN60360.1| hypothetical protein HSB1_09630 [Halogranum salarium B-1]
Length = 329
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 127/249 (51%), Gaps = 26/249 (10%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
+C +C ++ D + G+T+CS+CGLV++ +D EWR F ++ D RVG P
Sbjct: 33 HCPECG--GQLNPDTAHGETVCSDCGLVVDEDEIDHGPEWRAFDSKEKDQ-KSRVGAPTT 89
Query: 65 PLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFK 111
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 90 NMMHDKGLSTNIGWQDKDAYGNS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALG 146
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
I M+ LGL +++ A+ IY++ D L GR+ E + + LY A RQ PR++ E
Sbjct: 147 EIDRMASGLGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARQAGTPRSLDE 206
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
SV+ K EI R ++V+ L+ +E+ Y+ RF S+L +++++ + A
Sbjct: 207 IASVSR-VDKDEIARTYRYVVRELK------LEIQPADPEQYVPRFASDLDLSDESERRA 259
Query: 232 QEAVQKSED 240
++ +Q +++
Sbjct: 260 RKLLQNAKE 268
>gi|448329811|ref|ZP_21519107.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445613430|gb|ELY67131.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 319
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 124/244 (50%), Gaps = 21/244 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T +V D G+ +C+ECGLVL +D EWR F + +HD + RVG PL
Sbjct: 23 CPDCETDT-IVHDPDRGEQVCAECGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAPLT 79
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G L +L+ R+ + +RNL A I
Sbjct: 80 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 139
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ +Q +RGR+ E + + LY ACR+E+ PR+++E +
Sbjct: 140 RMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTA 199
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ ++EIGR +I L+ + + + ++ RFCS L + A +
Sbjct: 200 VSR-VDQREIGRTYRYIADELD------INLEPTNPRQFVPRFCSELDVDKDVETKAIDI 252
Query: 235 VQKS 238
+ ++
Sbjct: 253 IDRT 256
>gi|389846515|ref|YP_006348754.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448615811|ref|ZP_21664574.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388243821|gb|AFK18767.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445751942|gb|EMA03373.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 345
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 126/248 (50%), Gaps = 25/248 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T +V D G+T+C ECGLV++ +D EWR F N S RVG P
Sbjct: 49 CPECGSET-LVSDSEHGETVCDECGLVVQENEIDRGPEWRAF-NSSEKDQKSRVGAPTTN 106
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 107 MMHDKGLSTNIGWQNKDAYGRS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 163
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL ++++ A+ IY++ + L GR+ E + A LY + R + PR++ E
Sbjct: 164 IDRMASALGLPESVRETASVIYRRALNDDLLPGRSIEGVATAALYASARMASTPRSLDEI 223
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
SV+ K+EI R ++V+ L+ +E+ Y+ RF S LG+++++ + A+
Sbjct: 224 TSVSR-VEKEEIARTYRYVVRELK------LEIKPADPEQYVPRFASELGLSDESERRAR 276
Query: 233 EAVQKSED 240
+ ++ +++
Sbjct: 277 QLLKNAKE 284
>gi|448363001|ref|ZP_21551605.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
gi|445647623|gb|ELZ00597.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
Length = 317
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 124/244 (50%), Gaps = 21/244 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T ++ D G+ +C ECGLVL +D EWR F + +HD + RVG PL
Sbjct: 21 CPDCETET-IIHDPDRGERVCGECGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAPLT 77
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G L +L+ R+ + +RNL A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ +Q +RGR+ E + + LY ACR+E PR+++E S
Sbjct: 138 RMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEGIPRSLEEVTS 197
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ ++EIGR +I L+ + + + ++ RFCS L ++ A +
Sbjct: 198 VSR-VDQREIGRTYRYIADELD------INLEPTNPRQFVPRFCSELDVSKAVETKAVDI 250
Query: 235 VQKS 238
++++
Sbjct: 251 IEQT 254
>gi|320168443|gb|EFW45342.1| transcription initiation factor IIB [Capsaspora owczarzaki ATCC
30864]
Length = 342
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 129/254 (50%), Gaps = 27/254 (10%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH--DPVRVG 60
++ C +C+R TE++ H GD +C+ CG V+ +D SEWR FAN+ + DP R+G
Sbjct: 23 ETMCPECRRPTEILESHQTGDYVCTACGTVVGDRLIDFNSEWRTFANDKGEEHGDPSRIG 82
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
+NPLL+G L+T +A+ G + E + S + ++ DR L +AF+ I +R+
Sbjct: 83 SAVNPLLNGSDLTTTMAQ---GFNAESKAISRAHAKTTANQIDRQLQKAFRLIGDFGERM 139
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEA--------------IVAACLYIACRQENKP 166
L + I +A +I+K++E+ R RN A + AA L++ACR E
Sbjct: 140 HLPSNITLKAKQIFKQMEEHY-TRERNGAASQFGAIVGGKGAKAVAAASLFLACRLEKVS 198
Query: 167 RTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQ 226
RT KE +V++ ++EI RA I + L + + S+Y+ R +L +
Sbjct: 199 RTYKEITAVSH-VREQEISRASSEIKRIL------GIHSTVVDVSEYVPRLGDHLSLPLN 251
Query: 227 AVKAAQEAVQKSED 240
A + Q++ +
Sbjct: 252 VTMLATQIAQRANE 265
>gi|448299195|ref|ZP_21489208.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
tibetense GA33]
gi|445588729|gb|ELY42971.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
tibetense GA33]
Length = 326
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/251 (32%), Positives = 124/251 (49%), Gaps = 26/251 (10%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D C +C +V D G+T+C +CGLV+E SVD EWR F + + ++ RVG P
Sbjct: 28 DLACPEC--TGHLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAP 84
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQA 109
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 85 TTNTMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQA 141
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
I M+ LGL T +++ A+ IY++ D+ L GR+ E + +C+Y A RQ PR++
Sbjct: 142 LGEIDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARQAGVPRSL 201
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVK 229
E V+ K EI R ++V+ L +E+ Y+ RF S L ++++A
Sbjct: 202 DEIADVSR-VEKNEIARTYRYVVREL------GLEVQPADPESYVPRFASGLDLSDEAEH 254
Query: 230 AAQEAVQKSED 240
A+ +Q +++
Sbjct: 255 RARGLLQNAKE 265
>gi|448302684|ref|ZP_21492657.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445595257|gb|ELY49368.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 316
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 123/244 (50%), Gaps = 21/244 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T +V D G+ +C ECGLVL +D EWR F + +HD + RVG PL
Sbjct: 21 CPDCETDT-IVHDPDRGERVCKECGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAPLT 77
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G L +L+ R+ + +RNL A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ +Q +RGR+ E + + LY ACR+E+ PR+++E +
Sbjct: 138 RMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTA 197
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ ++EIGR +I L+ + + + ++ RFCS L + A E
Sbjct: 198 VSR-VDQREIGRTYRYIADELD------INLEPTNPRQFVPRFCSELDVDKDVETKAVEI 250
Query: 235 VQKS 238
+ ++
Sbjct: 251 IDET 254
>gi|448308488|ref|ZP_21498365.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
gi|445593776|gb|ELY47945.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
Length = 326
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 125/253 (49%), Gaps = 26/253 (10%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
+D C +C +V D G+TIC +CGLV+E SVD EWR F + + ++ RVG
Sbjct: 26 QSDLACPEC--AGNLVVDDEHGETICEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVG 82
Query: 61 GPLNPLLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLI 107
P + GLST I K G S L S K+Q R S +RNL
Sbjct: 83 APTTNTMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLK 139
Query: 108 QAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPR 167
QA I M+ LGL T +++ A+ IY++ ++ L GR+ E + AC+Y A RQ PR
Sbjct: 140 QALGEIDRMASALGLPTNVRETASVIYRRALNEDLLPGRSIEGVSTACVYAAARQAGVPR 199
Query: 168 TVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQA 227
++ E V+ K EI R ++V+ L +E+ Y+ RF S L ++++A
Sbjct: 200 SLDEIADVSR-VEKNEIARTYRYVVREL------GLEVQPADPESYVPRFASGLDLSDEA 252
Query: 228 VKAAQEAVQKSED 240
A+ +Q +++
Sbjct: 253 EHRARGLLQNAKE 265
>gi|344212211|ref|YP_004796531.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|448671788|ref|ZP_21687593.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|343783566|gb|AEM57543.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|445764924|gb|EMA16067.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 324
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 121/246 (49%), Gaps = 26/246 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D G+T+C +CGLV+E +D EWR F ++ D + RVG P
Sbjct: 30 CPECN--GSLLSDSERGETVCEDCGLVVEEDEIDPGPEWRAFDSKEKD-EKSRVGAPTTN 86
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 87 MMHDKGLSTNIGWQDKDAYGNS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 143
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D+ L GR+ E + A LY A RQ PR++ E
Sbjct: 144 IDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEI 203
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ K EI R ++V+ L S+E+ Y+ RF S+L ++ + + A+
Sbjct: 204 AGVSR-VEKDEIARTYRYVVREL------SLEIQPADPESYVPRFASDLDLSEEVERRAR 256
Query: 233 EAVQKS 238
+ +Q +
Sbjct: 257 QLLQNA 262
>gi|448502246|ref|ZP_21612519.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445694402|gb|ELZ46531.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 325
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 120/240 (50%), Gaps = 26/240 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D G+T+C +CGLV+E +D EWR F ++ D+ RVG P
Sbjct: 30 CPECG--GQLATDTEHGETVCVDCGLVVEEDEIDRGPEWRAFDSKEKDN-KSRVGAPTTN 86
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 87 MMHDKGLSTNIGWQDKDAYGKS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 143
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D+ L GR+ E + A LY A RQ PR++ E
Sbjct: 144 IDRMASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEI 203
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ K EI R ++V+ L+ +E+ Y+ RF S+LG++++A + A+
Sbjct: 204 AGVSR-VEKDEIARTYRYVVRELK------LEIQPADPESYVPRFASDLGLSDEAERRAR 256
>gi|448420035|ref|ZP_21580845.1| transcription initiation factor TFB [Halosarcina pallida JCM 14848]
gi|445674203|gb|ELZ26748.1| transcription initiation factor TFB [Halosarcina pallida JCM 14848]
Length = 330
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 128/252 (50%), Gaps = 27/252 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +C T +V D G+T+C ECGLV+E +VD EWR F +SS+ D RVG P
Sbjct: 35 CPECGS-TNLVNDSEHGETVCEECGLVVEEDAVDRGPEWRAF--DSSERDSKSRVGAPTT 91
Query: 65 PLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFK 111
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 92 NMMHDKGLSTNIGWQDKDAYGNS--LSSNQRQKMQRLRTWNERFRTRDSK-ERNLKQALG 148
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
I M+ LGL +++ A+ IY++ D L GR+ E + + LY A R PR++ E
Sbjct: 149 EIDRMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAGTPRSLDE 208
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
+V+ K EI R ++V+ L+ +E+ Y+ RF S+L +++++ + A
Sbjct: 209 ITNVSR-VGKDEISRTYRYVVRELK------LEIEPADPEQYVPRFASDLDLSDESERHA 261
Query: 232 QEAVQKSEDLDI 243
++ ++ +++ I
Sbjct: 262 RQLLKTAKEQGI 273
>gi|448309192|ref|ZP_21499054.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
bangense JCM 10635]
gi|445591113|gb|ELY45322.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
bangense JCM 10635]
Length = 316
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 121/243 (49%), Gaps = 19/243 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DC+ T +V D G+ +C ECGLVL +D EWR F N ++ RVG PL
Sbjct: 21 CPDCETET-IVHDPDRGERVCKECGLVLTEDPIDYGPEWRAF-NAQEHNELSRVGAPLTQ 78
Query: 66 LLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSISA 115
+ GL+T I + +S G L +L+ R+ + +RNL A I
Sbjct: 79 SMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEIDR 138
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M LG+ +K+ A+ IY++ +Q +RGR+ E + + LY ACR+E+ PR+++E +V
Sbjct: 139 MVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTAV 198
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ ++EIGR +I L+ + + + ++ RFCS L + A E +
Sbjct: 199 SR-VDQREIGRTYRYIADELD------INLEPTNPRQFVPRFCSELNVDKDVETKAVEII 251
Query: 236 QKS 238
++
Sbjct: 252 DQT 254
>gi|320100432|ref|YP_004176024.1| transcription initiation factor IIB (TFIIB) [Desulfurococcus
mucosus DSM 2162]
gi|319752784|gb|ADV64542.1| Transcription initiation factor IIB (TFIIB) [Desulfurococcus
mucosus DSM 2162]
Length = 315
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 120/236 (50%), Gaps = 17/236 (7%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
++V+D + G+ +C + G V+E +DE EWR F E R GGP+ + G +
Sbjct: 28 KIVYDAAHGEYVCQDTGEVIEEKVIDERPEWRAFTPEERGRR-ARTGGPVTAAVHDMGFA 86
Query: 74 TVIAKPTAGGSTELLSGS------LGKLQARS---SHPDRNLIQAFKSISAMSDRLGLVT 124
T I + L+ L K QAR+ + +RNL QA + ++D L L +
Sbjct: 87 TSIDYTDRDAAGRRLTEKKHELVKLRKWQARTRILTSVERNLAQAMNELDRLADVLNLPS 146
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+K+ A IY++ D+ +RGR+ E+++AA +Y+ACR+ PR++ E +KEI
Sbjct: 147 YVKEEAARIYREAVDRGLVRGRSIESVIAAAIYLACREMKVPRSLDEITRHTR-IGRKEI 205
Query: 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
R +++ L +++ T +DY+ R LG+ QAVK A E + +++
Sbjct: 206 ARCYRLLLREL------RIKVSTTDPADYVPRIVHGLGLPGQAVKLAIEIINTAKE 255
>gi|448561557|ref|ZP_21634841.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445720739|gb|ELZ72411.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
Length = 318
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 124/248 (50%), Gaps = 25/248 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + +V D G+T+C +CGLV+E +D EWR F N S RVG P
Sbjct: 22 CPECGSES-LVADSEHGETVCEDCGLVVEENEIDHGPEWRAF-NSSEKDQKSRVGAPTTN 79
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 80 MMHDKGLSTNIGWQNKDAYGRS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 136
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D L GR+ E + + LY A R + PR++ E
Sbjct: 137 IDRMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMADTPRSLDEI 196
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
SV+ K EI R ++V+ L+ +E+ Y+ RF S LG+++++ + A+
Sbjct: 197 TSVSR-VEKDEIARTYRYVVRELK------LEIKPADPEQYVPRFASELGLSDESERRAR 249
Query: 233 EAVQKSED 240
+ ++ +++
Sbjct: 250 QLLKNAKE 257
>gi|448681685|ref|ZP_21691776.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445767555|gb|EMA18658.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
Length = 324
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 121/246 (49%), Gaps = 26/246 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D G+T+C +CGLV+E +D EWR F ++ D + RVG P
Sbjct: 30 CPECS--GSLLSDSERGETVCEDCGLVVEEDEIDPGPEWRAFDSKEKD-EKSRVGAPTTN 86
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 87 MMHDKGLSTNIGWQDKDAYGNS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 143
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D+ L GR+ E + A LY A RQ PR++ E
Sbjct: 144 IDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEI 203
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ K EI R ++V+ L S+E+ Y+ RF S+L ++ + + A+
Sbjct: 204 AGVSR-VEKDEIARTYRYVVREL------SLEIQPADPESYVPRFASDLDLSEEVERRAR 256
Query: 233 EAVQKS 238
+ +Q +
Sbjct: 257 QLLQNA 262
>gi|20094294|ref|NP_614141.1| transcription initiation factor IIB [Methanopyrus kandleri AV19]
gi|24212486|sp|Q8TX21.1|TF2B_METKA RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|19887337|gb|AAM02071.1| Transcription initiation factor IIB [Methanopyrus kandleri AV19]
Length = 307
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 116/235 (49%), Gaps = 12/235 (5%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
E+VFD G+ +C+ CGLV E +D EWR F N R G P+ L G+S
Sbjct: 22 EIVFDEERGEYVCANCGLVTEDPVIDPGPEWRHF-NPDQRQRRSRTGEPVKLRLPDKGIS 80
Query: 74 TVIAKP--TAGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKD 128
T+I + +GG + AR S +RN QAF + ++ +L L ++++
Sbjct: 81 TIIDRELRDSGGKKNPRMRRIRTWDARIKVSGSRERNFFQAFLELENLASKLQLPESVRE 140
Query: 129 RANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAK 188
A IY+K + +RGR E+++ A ++ AC++ PRT +E + + EI RA
Sbjct: 141 LAASIYRKAYKEGIVRGRGIESVLGAAVFAACKEARVPRTAREIAEALGVSDENEILRAY 200
Query: 189 EFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
+ + L +++ SD+L RF S LG++ AQE ++K+++ I
Sbjct: 201 RVLQRRL------NLKQKPTEPSDHLPRFASKLGVSENVQAKAQEIIEKAKEKGI 249
>gi|335434083|ref|ZP_08558890.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334898148|gb|EGM36265.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 334
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 120/246 (48%), Gaps = 23/246 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C V D G+ +C +CG+VLE+ ++D EWR F D + RVG P
Sbjct: 31 CPECG--GTVTTDDGHGERVCEQCGVVLESDAIDHGPEWRAFTPSEKD-ERSRVGSPTTK 87
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISA 115
LL GLST I S LS S + +R + DRNL QA I
Sbjct: 88 LLHDEGLSTSIGWSDKDASGRTLSPSQREKMSRLRVWDERFRATDSRDRNLKQALGEIDR 147
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL +++ A+ IY++ D+ L GR+ E + A LY A RQ PR++ EF +
Sbjct: 148 MASALGLPENVRETASVIYRRALDEDLLPGRSIEGMATASLYAAARQAGTPRSLDEFEPI 207
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE-- 233
+ +++ RA ++ + LE + + ++YL RF S L +++ + A+E
Sbjct: 208 SR-VRRQKYARAYRYLARQLE------LGIAPADPAEYLPRFVSELELSDDLERKARELL 260
Query: 234 -AVQKS 238
AV+K+
Sbjct: 261 SAVKKT 266
>gi|55378144|ref|YP_135994.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448636768|ref|ZP_21675216.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|448648512|ref|ZP_21679643.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|448685471|ref|ZP_21693463.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|55230869|gb|AAV46288.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445765074|gb|EMA16213.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445775613|gb|EMA26623.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|445782082|gb|EMA32933.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 324
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 121/246 (49%), Gaps = 26/246 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D G+T+C +CGLV+E +D EWR F ++ D + RVG P
Sbjct: 30 CPECS--GALLSDSERGETVCEDCGLVVEEDEIDPGPEWRAFDSKEKD-EKSRVGAPTTN 86
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 87 MMHDKGLSTNIGWQDKDAYGNS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 143
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D+ L GR+ E + A LY A RQ PR++ E
Sbjct: 144 IDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEI 203
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ K EI R ++V+ L S+E+ Y+ RF S+L ++ + + A+
Sbjct: 204 AGVSR-VEKDEIARTYRYVVREL------SLEIQPADPESYVPRFASDLDLSEEVERRAR 256
Query: 233 EAVQKS 238
+ +Q +
Sbjct: 257 QLLQNA 262
>gi|294953373|ref|XP_002787731.1| Transcription initiation factor IIB, putative [Perkinsus marinus
ATCC 50983]
gi|239902755|gb|EER19527.1| Transcription initiation factor IIB, putative [Perkinsus marinus
ATCC 50983]
Length = 332
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 116/246 (47%), Gaps = 22/246 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +CK T++V D++ G IC CGL+LE +D++ EWR F+ +SS D RVGG N
Sbjct: 13 CPECKGKTQIVVDYAQGSVICRNCGLILEMSCIDDSQEWRTFS-DSSGPDRNRVGGTTNN 71
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTT 125
+L GGL T + G+T L + + S + DR L + K + + D L L
Sbjct: 72 MLHSGGLGTSVGF----GNTRLARTHM--IAVNSDNVDRTLNKGHKILRDIMDALALPDN 125
Query: 126 IKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIG 185
I R +I K+++D L+G+ + A Y+ACRQE R++KE + KE+
Sbjct: 126 IYTRCCQILKQMDDNGLLKGKTNYPWLLAVTYMACRQEGAGRSIKEIRAAQPTVKDKEVA 185
Query: 186 RAKEFIVKHLEAEMGQSVE---------------MGTIHASDYLRRFCSNLGMTNQAVKA 230
+ + K L+ Q +G + ++ R+C+ LG+ A
Sbjct: 186 KNFWRLEKMLQKASVQEARTGVGGGAVLGAKVAGLGAVAGDTFMPRYCNRLGIPECEKAA 245
Query: 231 AQEAVQ 236
A+Q
Sbjct: 246 DHVAMQ 251
>gi|322370876|ref|ZP_08045431.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
gi|320549553|gb|EFW91212.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
Length = 319
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 113/240 (47%), Gaps = 19/240 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V + +C +CGLV+E VD EWR F N S RVG P
Sbjct: 26 CPECGS-KNLVNSADQSELVCDDCGLVVEEDHVDRGPEWRAF-NHSERQSKSRVGAPTTQ 83
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A I
Sbjct: 84 TMHDKGLTTTIDWKNQDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + + LY ACRQE PR+++E V
Sbjct: 144 MASALGVPRSVREVASVIYRRALAEDLIRGRSIEGVATSTLYAACRQEGIPRSLEEVAEV 203
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +EM + Y+ RFCS+LG++ + A E +
Sbjct: 204 SR-VDQKEIGRTYRYISQEL------GLEMKPVDPKQYVPRFCSDLGVSEEVQSKANEII 256
>gi|448629133|ref|ZP_21672532.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445757699|gb|EMA09040.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
Length = 324
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 121/246 (49%), Gaps = 26/246 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D G+T+C +CGLV+E +D EWR F ++ D + RVG P
Sbjct: 30 CPECS--GALLSDSERGETVCEDCGLVVEEDEIDPGPEWRAFDSKEKD-EKSRVGAPTTN 86
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 87 MMHDKGLSTNIGWQDKDAYGNS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 143
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D+ L GR+ E + A LY A RQ PR++ E
Sbjct: 144 IDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEI 203
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ K EI R ++V+ L S+E+ Y+ RF S+L ++ + + A+
Sbjct: 204 AGVSR-VEKDEIARTYRYVVREL------SLEIQPADPESYVPRFASDLDLSEEVERRAR 256
Query: 233 EAVQKS 238
+ +Q +
Sbjct: 257 QLLQNA 262
>gi|448575781|ref|ZP_21642061.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|448591050|ref|ZP_21650815.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445730722|gb|ELZ82310.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445734546|gb|ELZ86105.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 316
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 114/240 (47%), Gaps = 19/240 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +VV D G+ +C +CGLVL+ +D EWR F N S RVG P+
Sbjct: 23 CPECGS-DQVVTDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 80
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A I
Sbjct: 81 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 140
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ ++ +RGR+ E + + LY ACRQE PR++ E V
Sbjct: 141 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVAEV 200
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +E+ + ++ RF S L ++ + A E +
Sbjct: 201 SR-VPQKEIGRTYRYISQEL------GLELKPVDPKQFVPRFASALNLSEEVQSKATEII 253
>gi|257388038|ref|YP_003177811.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257170345|gb|ACV48104.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 322
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 122/246 (49%), Gaps = 26/246 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++V D G+T+C +CGLV+E +D EWR F + S + RVG P
Sbjct: 27 CPECG--GDLVADSERGETVCEDCGLVVEEDEIDPGPEWRAF-DASEKDEKSRVGAPTTN 83
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 84 MMHDKGLSTNIGWQDKDAYGNS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 140
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D+ L GR+ E + + LY A RQ PR++ E
Sbjct: 141 IDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEI 200
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
+V+ K EI R ++V+ L +E+ Y+ RF S+L ++++ + A+
Sbjct: 201 SAVSR-VEKDEIARTYRYVVREL------GLEIQPADPESYVPRFASDLDLSDEVERRAR 253
Query: 233 EAVQKS 238
+ +Q +
Sbjct: 254 QLLQNA 259
>gi|448448980|ref|ZP_21591478.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445814072|gb|EMA64044.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
Length = 325
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 119/240 (49%), Gaps = 26/240 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D G+T+C +CGLV+E +D EWR F ++ D RVG P
Sbjct: 30 CPECG--GQLATDTEHGETVCVDCGLVVEEDEIDRGPEWRAFDSKEKDS-KSRVGAPTTN 86
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 87 MMHDKGLSTNIGWQDKDAYGKS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 143
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D+ L GR+ E + A LY A RQ PR++ E
Sbjct: 144 IDRMASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEI 203
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ K EI R ++V+ L+ +E+ Y+ RF S+LG++++A + A+
Sbjct: 204 AGVSR-VEKDEIARTYRYVVRELK------LEIQPADPESYVPRFASDLGLSDEAERRAR 256
>gi|449680698|ref|XP_002156994.2| PREDICTED: transcription initiation factor IIB-like, partial [Hydra
magnipapillata]
Length = 220
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 90/140 (64%), Gaps = 7/140 (5%)
Query: 104 RNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQE 163
+ + +A + R G V T +DR+N+++K+V DQK L+GR+ +AI +ACLYIACRQE
Sbjct: 16 KQVTEASSRVYTHEKREGFVRTQEDRSNQLFKQVHDQKSLKGRSNDAIASACLYIACRQE 75
Query: 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGM 223
PRT KE C+++ KKEIGR + I+K LEA SV++ I + D++ RFCSNL +
Sbjct: 76 GVPRTFKEICAISK-IPKKEIGRCFKLILKALEA----SVDI--ITSEDFMSRFCSNLSL 128
Query: 224 TNQAVKAAQEAVQKSEDLDI 243
+AA +++ +LD+
Sbjct: 129 PASVQRAATYIARRAMELDL 148
>gi|294893167|ref|XP_002774359.1| Transcription initiation factor IIB, putative [Perkinsus marinus
ATCC 50983]
gi|239879707|gb|EER06175.1| Transcription initiation factor IIB, putative [Perkinsus marinus
ATCC 50983]
Length = 298
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 116/246 (47%), Gaps = 22/246 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +CK T++V D++ G IC CGL+LE +D++ EWR F+ +SS D RVGG N
Sbjct: 13 CPECKGKTQIVVDYAQGSVICRNCGLILEMSCIDDSQEWRTFS-DSSGPDRNRVGGTTNN 71
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTT 125
+L GGL T + G+T L + + S + DR L + K + + D L L
Sbjct: 72 MLHSGGLGTSVGF----GNTRLARTHM--IAVNSENVDRTLNKGHKILRDIMDALALPDN 125
Query: 126 IKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIG 185
I R +I K+++D L+G+ + A Y+ACRQE R++KE + KE+
Sbjct: 126 IYTRCCQILKQMDDNGLLKGKTNYPWLLAVTYMACRQEGAGRSIKEIRAAQPTVKDKEVA 185
Query: 186 RAKEFIVKHLEAEMGQSVE---------------MGTIHASDYLRRFCSNLGMTNQAVKA 230
+ + K L+ Q +G + ++ R+C+ LG+ A
Sbjct: 186 KNFWRLEKMLQKASVQEARTGVGGGAVLGAKVAGLGAVAGDTFMPRYCNRLGIPECEKAA 245
Query: 231 AQEAVQ 236
A+Q
Sbjct: 246 DHVAMQ 251
>gi|110667821|ref|YP_657632.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|385803264|ref|YP_005839664.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|109625568|emb|CAJ51995.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|339728756|emb|CCC39917.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 317
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 117/240 (48%), Gaps = 19/240 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ +VV D G+ +C++CGLVL+ +D EWR F N S RVG P+
Sbjct: 24 CPECES-GDVVTDADQGELVCNDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A +
Sbjct: 82 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEVDR 141
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ ++ +RGR+ E + + LY ACRQE PR++ E V
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVAEV 201
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +E+ + ++ RF S+L ++ + A E +
Sbjct: 202 SR-VPQKEIGRTYRYISQEL------GLELRPVDPKQFVPRFSSSLHLSEEVQSKATEII 254
>gi|332157709|ref|YP_004422988.1| transcription initiation factor IIB [Pyrococcus sp. NA2]
gi|331033172|gb|AEC50984.1| transcription initiation factor IIB [Pyrococcus sp. NA2]
Length = 300
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 118/230 (51%), Gaps = 10/230 (4%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
TE ++D G+ +C+ CG V+E VD EWR F + S R G P + LL GL
Sbjct: 13 TEFIYDPERGEIVCARCGYVIEENIVDMGPEWRAF-DASQREKRSRTGAPESILLHDKGL 71
Query: 73 STVIA-KPTAGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKD 128
ST I T G L K Q+R S +RNL A + ++ +L L +++
Sbjct: 72 STDIGIDRTLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLPKHVEE 131
Query: 129 RANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAK 188
A +Y++ + +RGR+ E+++AAC+Y ACR PRT+ E +A KKEIGR+
Sbjct: 132 EAARLYREAVRRGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIAR-VEKKEIGRSY 190
Query: 189 EFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKS 238
FI ++L + + +DY+ +F LG++ + + A E ++++
Sbjct: 191 RFIARNLNLTPKKLF----VKPTDYVNKFADELGLSERVRRRAIEILEEA 236
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LGL ++ RA EI ++ + G++ +VAA LYIA
Sbjct: 201 PKKLFVKPTDYVNKFADELGLSERVRRRAIEILEEAYKRGLTSGKSPAGLVAAALYIASL 260
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E + RT +E VA T R KE + K
Sbjct: 261 LEGEKRTQREVAEVARVTEVTVRNRYKELVEK 292
>gi|257051172|ref|YP_003129005.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256689935|gb|ACV10272.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 323
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 118/237 (49%), Gaps = 24/237 (10%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D G+T+C ECGLV+E +D EWR F D RVG P ++ GLST
Sbjct: 35 LVTDSERGETVCGECGLVVEEDEIDPGPEWRAFDAAEKDQ-KSRVGAPTTNMMHDKGLST 93
Query: 75 VIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKSISAMSDRLG 121
I K G S L S K+Q R S +RNL QA I M+ LG
Sbjct: 94 NIGWQDKDAYGNS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGEIDRMASALG 150
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +++ A+ IY++ D+ L GR+ E + A LY A RQ PR++ E +V+ K
Sbjct: 151 LPENVRETASVIYRRALDENLLPGRSIEGVATASLYAAARQAGNPRSLDEIDNVSR-VEK 209
Query: 182 KEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKS 238
E+ R ++V+ L+ +E+ + Y+ RF S+L +T +A + A++ ++ +
Sbjct: 210 DEVARTYRYVVRELK------LEVKPADPTSYVPRFASDLELTEEAERHARDLLENA 260
>gi|448529404|ref|ZP_21620542.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445709166|gb|ELZ60999.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 324
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 121/240 (50%), Gaps = 26/240 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D G+T+C +CGLV+E +D EWR F ++ D+ RVG P
Sbjct: 29 CPECG--GQLATDTEHGETVCVDCGLVVEEDEIDRGPEWRAFDSKEKDNKS-RVGAPTTN 85
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 86 MMHDKGLSTNIGWQDKDAYGKS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 142
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D+ L GR+ E + + LY A RQ PR++ E
Sbjct: 143 IDRMASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSSLYAAARQAGTPRSLDEI 202
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
+V+ K EI R ++V+ L+ +E+ Y+ RF S+LG++++A + A+
Sbjct: 203 AAVSR-VEKDEIARTYRYVVRELK------LEIQPADPESYVPRFASDLGLSDEAERRAR 255
>gi|290559596|gb|EFD92924.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Parvarchaeum acidophilus ARMAN-5]
Length = 307
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 124/233 (53%), Gaps = 17/233 (7%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
V +D S G+ +C CG V+E ++D EWR F +E D R+G PL+ G ST
Sbjct: 20 VTYDKSTGELVCQNCGYVIEGDAIDYGREWRSFEDER-DEGKGRMGSPLSYAKYDKGTST 78
Query: 75 VIAKPTAGGSTELLSGS------LGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
VI K A S +L + + L K Q R S+ +RNL A + S+RL + I+
Sbjct: 79 VIGK--ASESIKLSNANRRTFYKLRKWQPRISTAYERNLKFALTELRRASNRLHVSNIIQ 136
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
+ A ++Y++ ++ +RGR+ E+++A LY A R+ N+P T+ E +KE+G+A
Sbjct: 137 EEAAKMYREAITRRLVRGRSMESVIAGALYAAARKHNRPITLDEISDTFE-VERKEVGKA 195
Query: 188 KEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
+ + L +++ SDY+ +F S L ++N+ V A + ++++ED
Sbjct: 196 YRLLCREL------GIKILPTSPSDYIYKFASELKVSNKTVSDAVKLLKEAED 242
>gi|448319021|ref|ZP_21508530.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
gi|445597140|gb|ELY51217.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
Length = 326
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 123/248 (49%), Gaps = 26/248 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+T+C +CGLV+E SVD EWR F + + ++ RVG P
Sbjct: 31 CPEC--AGNLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DATEKNEKSRVGAPTTN 87
Query: 66 LLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 88 TMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQALGE 144
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL T +++ A+ IY++ ++ L GR+ E + AC+Y A RQ PR++ E
Sbjct: 145 IDRMASALGLPTNVRETASVIYRRALEEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 204
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ K EI R ++V+ L +E+ Y+ RF S L ++++A A+
Sbjct: 205 ADVSR-VEKNEIARTYRYVVREL------GLEVQPADPESYVPRFASGLELSDEAEHRAR 257
Query: 233 EAVQKSED 240
+Q +++
Sbjct: 258 ALLQNAKE 265
>gi|222479752|ref|YP_002565989.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222452654|gb|ACM56919.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 326
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 120/240 (50%), Gaps = 26/240 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D G+T+C +CGLV+E +D EWR F + D + RVG P
Sbjct: 31 CPECS--GQLASDTEHGETVCVDCGLVVEEDEIDRGPEWRAFDSSEKD-EKSRVGAPTTN 87
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 88 MMHDKGLSTNIGWQDKDAYGKS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 144
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D+ L GR+ E + + LY A RQ PR++ E
Sbjct: 145 IDRMASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSSLYAAARQAGTPRSLDEI 204
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
+V+ K EI R ++V+ L+ +E+ Y+ RF S+LG++++A + A+
Sbjct: 205 AAVSR-VEKDEIARTYRYVVRELK------LEIQPADPESYVPRFASDLGLSDEAERRAR 257
>gi|341583086|ref|YP_004763578.1| transcription initiation factor IIB [Thermococcus sp. 4557]
gi|340810744|gb|AEK73901.1| transcription initiation factor IIB [Thermococcus sp. 4557]
Length = 299
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 120/238 (50%), Gaps = 22/238 (9%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
TE ++D G+ IC CG V+E VD EWR F + S RVG P + LL GL
Sbjct: 13 TEFIYDPGRGEIICKVCGYVIEENVVDTGPEWRAF-DASQREKRARVGAPESILLHDKGL 71
Query: 73 STVIAKPTAGGSTELLSG-------SLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGL 122
ST I G LSG L K Q+R S +RNL A + ++ +L L
Sbjct: 72 STDI------GIDRNLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLKL 125
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+++ A +Y++ + +RGR+ E+++AAC+Y +CR PRT+ E ++ KK
Sbjct: 126 PRHVEEEAARLYREAVRKGLIRGRSIESVIAACVYASCRLLKVPRTLDEIADISR-VDKK 184
Query: 183 EIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
EIGR+ FI ++L + + +DY+ +F LGM+ + + A ++++ D
Sbjct: 185 EIGRSFRFIARNLNLTPKKLF----VKPTDYVNKFADELGMSERVRRRAIAILEEAYD 238
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LG+ ++ RA I ++ D+ G++ +VAA LYIA
Sbjct: 201 PKKLFVKPTDYVNKFADELGMSERVRRRAIAILEEAYDRGLTSGKSPAGLVAAALYIAGL 260
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E++ RT +E VA T R KE + K
Sbjct: 261 LEDEKRTQREVAEVARVTEVTVRNRYKELVDK 292
>gi|429191039|ref|YP_007176717.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|448327395|ref|ZP_21516723.1| Transcription factor TFIIB cyclin-related protein [Natronobacterium
gregoryi SP2]
gi|429135257|gb|AFZ72268.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|445608493|gb|ELY62332.1| Transcription factor TFIIB cyclin-related protein [Natronobacterium
gregoryi SP2]
Length = 326
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 123/251 (49%), Gaps = 26/251 (10%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D C +C +V D G+T+C +CGLV+E SVD EWR F + + ++ RVG P
Sbjct: 28 DVTCPEC--TGHLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAP 84
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQA 109
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 85 TTNTMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQA 141
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
I M+ LGL +++ A+ IY++ D+ L GR+ E + +C+Y A RQ PR++
Sbjct: 142 LGEIDRMASALGLPNNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARQAGVPRSL 201
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVK 229
E V+ K EI R ++V+ L +E+ Y+ RF S L ++++A
Sbjct: 202 DEIADVSR-VEKNEIARTYRYVVREL------GLEVQPADPESYVPRFASGLELSDEAEH 254
Query: 230 AAQEAVQKSED 240
A+ +Q +++
Sbjct: 255 RARALLQNAKE 265
>gi|399577766|ref|ZP_10771518.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399237208|gb|EJN58140.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 338
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 113/240 (47%), Gaps = 21/240 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C V HS G+ IC +CGLVL+ ++D EWR F N S RVG P
Sbjct: 48 CPECNSENLV---HSEGEVICDDCGLVLDEQNIDRGPEWRAF-NHSERQSKSRVGAPTTK 103
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A +
Sbjct: 104 TMHDKGLTTTIDWQNKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEMDR 163
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ ++ +RGR+ E + + LY ACRQE PR++ E V
Sbjct: 164 MASALGVPDSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVAEV 223
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +E+ + ++ RF S L ++ + A E +
Sbjct: 224 SR-VPQKEIGRTYRYISQEL------GLELKPVDPKQFVPRFASELELSKEVQSKANEII 276
>gi|435851445|ref|YP_007313031.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanomethylovorans hollandica
DSM 15978]
gi|433662075|gb|AGB49501.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanomethylovorans hollandica
DSM 15978]
Length = 337
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 128/252 (50%), Gaps = 27/252 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRVGG 61
C +C +V D+ + +CSECGLV++A VDE EWR F DHD RVG
Sbjct: 41 CPECGSRN-LVQDYERAELVCSECGLVVDAEFVDEGPEWRAF-----DHDQRMKRSRVGA 94
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFK 111
P+ + GLST+I + +S L K Q R S+ +RNL A
Sbjct: 95 PMTYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 154
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
+ M+ LGL T+++ A +Y+K D+ +RGR+ E + AA LY ACRQ + PRT+ E
Sbjct: 155 ELDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 214
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
V+ ++KEIGR FI + L S+++ DY+ RFCS L + +
Sbjct: 215 IGEVSR-VSRKEIGRTYRFISREL------SLKLMPTSPIDYVPRFCSGLNLKGEVQSKG 267
Query: 232 QEAVQKSEDLDI 243
E ++++ + ++
Sbjct: 268 VEILRQASEKEL 279
>gi|448730858|ref|ZP_21713162.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
gi|445793035|gb|EMA43630.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
Length = 334
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 115/243 (47%), Gaps = 19/243 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ + + G+ +C +CGL+LE ++D EWR F N + RVG P
Sbjct: 41 CPECESAS-FIKSADQGELVCEDCGLILEDDNIDRGPEWRAF-NHAERQSKSRVGAPTTQ 98
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I S LS L K Q R D RNL A
Sbjct: 99 TMHDKGLTTNIGWQNKDASGRSLSAEKRTRMNRLRKWQERVRTKDAGERNLQFALSETDR 158
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ +RGR+ EA+ LY ACR+E PR+++E V
Sbjct: 159 MASALGVPRSVREVASVIYRRALSDDLIRGRSIEAVATGALYAACRKEGIPRSLEEVTHV 218
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
A +KEIGR +I + L E+G M Y+ RFCS L ++ + A E +
Sbjct: 219 AR-VEQKEIGRTYRYIAREL--ELG----MRPTDPQKYVPRFCSALDLSEEVQSKANEVI 271
Query: 236 QKS 238
+ S
Sbjct: 272 EAS 274
>gi|335437678|ref|ZP_08560448.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334895047|gb|EGM33228.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 328
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 120/244 (49%), Gaps = 26/244 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++V D G+T+CSECGLV+E +D EWR F + D RVG P
Sbjct: 31 CPECG--GDLVTDSERGETVCSECGLVVEEDEIDPGPEWRAFDSAEKDKKS-RVGAPTTN 87
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 88 MMHDKGLSTNIGWQNKDAYGNS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 144
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D+ L GR+ E + A LY A RQ PR++ E
Sbjct: 145 IDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVATASLYAAARQAGNPRSLDEI 204
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ + E+ R ++V+ L ++E+ Y+ RF S+L ++ + + A+
Sbjct: 205 ERVSR-IDRMELTRTYRYVVREL------NLEVKPADPESYVPRFVSDLDLSEEVSRQAR 257
Query: 233 EAVQ 236
E ++
Sbjct: 258 ELIE 261
>gi|332795784|ref|YP_004457284.1| transcription initiation factor TFIIB [Acidianus hospitalis W1]
gi|332693519|gb|AEE92986.1| transcription initiation factor TFIIB [Acidianus hospitalis W1]
Length = 291
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 124/236 (52%), Gaps = 21/236 (8%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
++VFD + G+ IC+E G VLE VD+ EWR + E + G +N + GLS
Sbjct: 11 KIVFDANRGEYICTETGEVLEDKVVDQGPEWRAYTEEENRERSR--AGTINLAVHDMGLS 68
Query: 74 TVIAKPTAGGSTELLSGSLGKLQARS---SHPDRNLIQAFKSISAMSDRLGLVTTIKDRA 130
T + + + L KLQ RS + RNL++A + + D LGL +K+ A
Sbjct: 69 TYM---DTRAKDRIKAMRLRKLQIRSRVGTSEQRNLVKAMTILERIIDNLGLPKAVKEEA 125
Query: 131 NEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEF 190
IY+K ++K ++GR+ E +VAA +Y ACR+ N P T+ E S A KKEIG+A
Sbjct: 126 AIIYRKALEKKLIKGRSIEEVVAASVYAACRKMNIPTTLDEI-SKATSANKKEIGKAYRL 184
Query: 191 IVKHLEAEMGQSVEMGTIHASD---YLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
+++ ++ + ASD Y+ + S LG++ + + AA E V++++ I
Sbjct: 185 LLRE---------DVTEVPASDPKYYVMKIASLLGLSGKVMTAATEIVERAKKAGI 231
>gi|358060583|dbj|GAA93702.1| hypothetical protein E5Q_00347 [Mixia osmundae IAM 14324]
Length = 362
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 85/261 (32%), Positives = 140/261 (53%), Gaps = 28/261 (10%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C C+ T + ++S+GD +C CGLVL VDE SEWR FA + DP RVGGP +
Sbjct: 33 CPSCQDPTPNLAEEYSSGDLVCRSCGLVLSDRIVDERSEWRTFAGDEKGDDPSRVGGP-S 91
Query: 65 PLLSGGG----LSTVIAK--PTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSD 118
PL GG ST+I+ +G + EL +L + + + ++NL+ ++K ISA+ +
Sbjct: 92 PLAGLGGSADQFSTIISDRDGNSGLAKELQKAAL---RTQRASGEKNLVGSYKEISAVCE 148
Query: 119 RLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG 178
++ L T + D A ++YK+ +D+K L+G++ +AI+AAC++IACRQ RT KE ++
Sbjct: 149 KINLPTMVSDIAKQLYKRQDDEKLLKGKSNDAIIAACIFIACRQAGVSRTFKEIVELSR- 207
Query: 179 TTKKEIGRAKEFIVKHLE----------------AEMGQSVEMGTIHASDYLRRFCSNLG 222
KK +G+ + + + + V +G D + RFC++LG
Sbjct: 208 VPKKVLGQCFKILKSVFDTNDVGTGGITADGTVVTDTTHRVNLGGNGPEDTIVRFCNHLG 267
Query: 223 MTNQAVKAAQEAVQKSEDLDI 243
M+ +E V+K +L +
Sbjct: 268 MSAYIQSRGREVVRKVMNLGV 288
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
+I + LG+ I+ R E+ +KV + L GR+ + +C+Y+ +PR+ ++
Sbjct: 258 TIVRFCNHLGMSAYIQSRGREVVRKVMNLGVLDGRSPVTVAGSCIYLTAHLFGEPRSARD 317
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQS 202
VA G T I A I HL+ + Q+
Sbjct: 318 IGEVA-GVTDGTIRMAYRLIHPHLDEVIDQA 347
>gi|448718282|ref|ZP_21703005.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
gi|445784444|gb|EMA35255.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
Length = 325
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 123/244 (50%), Gaps = 21/244 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T +V D G+ +C +CGLVL +D EWR F + +HD + RVG PL
Sbjct: 29 CPDCETET-IVHDPDRGERVCEQCGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAPLT 85
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G + +L+ R+ + +RNL A I
Sbjct: 86 QSMHDRGLTTTIDWRNKDANGRSMSAEKHGQIHRLRVWQERIRTKNAGERNLKYALSEID 145
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ +Q +RGR+ E + + LY ACR+E+ PR+++E +
Sbjct: 146 RMVSALGVPNPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTA 205
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ ++EIGR +I L+ + + + ++ RFCS L + A E
Sbjct: 206 VSR-VDQREIGRTYRYIADELD------INLEPTNPRQFVPRFCSELDVGKDIETKAVEI 258
Query: 235 VQKS 238
+ ++
Sbjct: 259 IDRT 262
>gi|292654406|ref|YP_003534303.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|433424039|ref|ZP_20406390.1| transcription initiation factor TFB [Haloferax sp. BAB2207]
gi|448293951|ref|ZP_21484053.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448573512|ref|ZP_21640995.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|291370888|gb|ADE03115.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|432198180|gb|ELK54492.1| transcription initiation factor TFB [Haloferax sp. BAB2207]
gi|445569344|gb|ELY23918.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445718418|gb|ELZ70108.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
Length = 288
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 114/224 (50%), Gaps = 13/224 (5%)
Query: 21 AGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPT 80
AG+T+C++CGLV+ Y +D EWR FA++ D +P R G PL GLST I + T
Sbjct: 21 AGETVCTDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTRSRHDRGLSTEIGRST 78
Query: 81 A-GGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKK 136
G + + R S+ +RN + AF I ++ L L I+D+A +++
Sbjct: 79 RIKGRKRRQFARMRRQHNRARISTKRERNQVYAFTEIRRVTSALSLPNHIRDQACSLFES 138
Query: 137 VEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLE 196
+++ LRGR+ E AAC+Y ACR R+V+E C V+ T + + L
Sbjct: 139 AQNEDLLRGRSLEGFAAACVYAACRVAGVSRSVEEVCDVSKATEAEH-----QAAYGALN 193
Query: 197 AEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
++G + + ++YL RF + L + + + A+E V ++ D
Sbjct: 194 RDLG--LPVAPADPTEYLPRFATKLDLDSDTERRAREYVAEARD 235
>gi|448543870|ref|ZP_21625331.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448551030|ref|ZP_21629172.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448558595|ref|ZP_21633152.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445706012|gb|ELZ57899.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445710586|gb|ELZ62384.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445712347|gb|ELZ64129.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
Length = 288
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 114/224 (50%), Gaps = 13/224 (5%)
Query: 21 AGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPT 80
AG+T+C++CGLV+ Y +D EWR FA++ D +P R G PL GLST I + T
Sbjct: 21 AGETVCTDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTRSRHDRGLSTEIGRST 78
Query: 81 A-GGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKK 136
G + + R S+ +RN + AF I ++ L L I+D+A +++
Sbjct: 79 RIKGRKRRQFARMRRQHNRARISTKRERNQVYAFTEIRRVTSALSLPNHIRDQACSLFES 138
Query: 137 VEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLE 196
+++ LRGR+ E AAC+Y ACR R+V+E C V+ T + + L
Sbjct: 139 AQNEDLLRGRSLEGFAAACVYAACRVAGVSRSVEEVCDVSKATEAEH-----QAAYGALN 193
Query: 197 AEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
++G + + ++YL RF + L + + + A+E V ++ D
Sbjct: 194 RDLG--LPVAPADPTEYLPRFATKLDLDSDTERRAREYVAEARD 235
>gi|14520892|ref|NP_126367.1| transcription initiation factor IIB [Pyrococcus abyssi GE5]
gi|13878809|sp|Q9V0V5.1|TF2B_PYRAB RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|5458109|emb|CAB49598.1| TATA box binding protein TFIIB-BBRE complex, chain B [Pyrococcus
abyssi GE5]
gi|380741440|tpe|CCE70074.1| TPA: transcription initiation factor IIB [Pyrococcus abyssi GE5]
Length = 300
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 120/231 (51%), Gaps = 12/231 (5%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
TE ++D G+ +C+ CG V+E VD EWR F + S R G P + LL GL
Sbjct: 13 TEFIYDPERGEIVCARCGYVIEENIVDMGPEWRAF-DASQREKRSRTGAPESILLHDKGL 71
Query: 73 STVIA--KPTAGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
ST I + G E + L K Q+R S +RNL A + ++ +L L ++
Sbjct: 72 STDIGIDRSLTGLMREKMY-RLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLPKHVE 130
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
+ A +Y++ + +RGR+ E+++AAC+Y ACR PRT+ E +A KKEIGR+
Sbjct: 131 EEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIAR-VEKKEIGRS 189
Query: 188 KEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKS 238
FI ++L + + +DY+ +F LG++ + + A E ++++
Sbjct: 190 YRFIARNLNLTPKKLF----VKPTDYVNKFADELGLSEKVRRRAIEILEEA 236
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LGL ++ RA EI ++ + G++ +VAA LYIA
Sbjct: 201 PKKLFVKPTDYVNKFADELGLSEKVRRRAIEILEEAYKRGLTSGKSPAGLVAAALYIASL 260
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E + RT +E VA T R KE + K
Sbjct: 261 LEGEKRTQREVAEVARVTEVTVRNRYKELVEK 292
>gi|292655630|ref|YP_003535527.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448291763|ref|ZP_21482468.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448540907|ref|ZP_21623828.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448549383|ref|ZP_21627988.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448555504|ref|ZP_21631544.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|448571045|ref|ZP_21639556.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|448585553|ref|ZP_21647946.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|448603114|ref|ZP_21656935.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|448623724|ref|ZP_21670081.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|291370098|gb|ADE02325.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445573768|gb|ELY28284.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445709060|gb|ELZ60895.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445712431|gb|ELZ64212.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445718249|gb|ELZ69952.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445722963|gb|ELZ74614.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445726253|gb|ELZ77870.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445746310|gb|ELZ97772.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445752252|gb|EMA03679.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 317
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 114/240 (47%), Gaps = 19/240 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++V D G+ +C +CGLVL+ +D EWR F N S RVG P+
Sbjct: 24 CPECGS-DQIVTDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A I
Sbjct: 82 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ ++ +RGR+ E + + LY ACRQE PR++ E V
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVAEV 201
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +E+ + ++ RF S L ++ + A E +
Sbjct: 202 SR-VPQKEIGRTYRYISQEL------GLELKPVDPKQFVPRFASALDLSEEVQAKATEII 254
>gi|448595941|ref|ZP_21653388.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|445742395|gb|ELZ93890.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 317
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 114/240 (47%), Gaps = 19/240 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++V D G+ +C +CGLVL+ +D EWR F N S RVG P+
Sbjct: 24 CPECGS-DQIVTDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A I
Sbjct: 82 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ ++ +RGR+ E + + LY ACRQE PR++ E V
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVAEV 201
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +E+ + ++ RF S L ++ + A E +
Sbjct: 202 SR-VPQKEIGRTYRYISQEL------GLELKPVDPKQFVPRFASALDLSEEVQAKATEII 254
>gi|448590590|ref|ZP_21650355.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445734086|gb|ELZ85645.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 315
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 125/251 (49%), Gaps = 25/251 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ +V D G+T+C +CGLV+E +D EWR F N S + RVG P
Sbjct: 19 CPECES-DALVSDTEHGETVCDDCGLVVEENEIDHGPEWRAF-NSSEKNQKSRVGAPTTN 76
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 77 MMHDKGLSTNIGWQNKDAYGRS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 133
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ + L GR+ E + + LY A R + PR++ E
Sbjct: 134 IDRMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATSALYAAARMADTPRSLDEI 193
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
SV+ K EI R ++V+ L+ +E+ Y+ RF S LG++++ + A+
Sbjct: 194 TSVSR-VEKDEIARTYRYVVRELK------LEIKPADPEQYVPRFASELGLSDEPERRAR 246
Query: 233 EAVQKSEDLDI 243
+ ++ +++ +
Sbjct: 247 QLLKNAKEQSV 257
>gi|14591268|ref|NP_143345.1| transcription initiation factor IIB [Pyrococcus horikoshii OT3]
gi|6647871|sp|O59151.1|TF2B_PYRHO RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|3257906|dbj|BAA30589.1| 300aa long hypothetical transcription initiation factor IIB
[Pyrococcus horikoshii OT3]
Length = 300
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 120/231 (51%), Gaps = 12/231 (5%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
TE ++D G+ +C+ CG V+E +D EWR F + S R G P + LL GL
Sbjct: 13 TEFIYDPERGEIVCARCGYVIEENIIDMGPEWRAF-DASQREKRSRTGAPESILLHDKGL 71
Query: 73 STVIA--KPTAGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
ST I + G E + L K Q+R S +RNL A + ++ +L L ++
Sbjct: 72 STDIGIDRSLTGLMREKMY-RLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLPKHVE 130
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
+ A +Y++ + +RGR+ E+++AAC+Y ACR PRT+ E +A KKEIGR+
Sbjct: 131 EEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIAR-VEKKEIGRS 189
Query: 188 KEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKS 238
FI ++L + + +DY+ +F LG++ + + A E ++++
Sbjct: 190 YRFIARNLNLTPKKLF----VKPTDYVNKFADELGLSEKVRRRAIEILEEA 236
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LGL ++ RA EI ++ + G++ +VAA LYIA
Sbjct: 201 PKKLFVKPTDYVNKFADELGLSEKVRRRAIEILEEAYRRGLTSGKSPAGLVAAALYIASL 260
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E + RT +E VA T R KE + K
Sbjct: 261 LEGEKRTQREVAEVARVTEVTVRNRYKELVEK 292
>gi|336255382|ref|YP_004598489.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335339371|gb|AEH38610.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 329
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 123/251 (49%), Gaps = 26/251 (10%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D C +C +V D G+T+C +CGLV+E SVD EWR F + + ++ RVG P
Sbjct: 31 DLVCPEC--AGNLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAP 87
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQA 109
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 88 TTNTMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQA 144
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
I M+ LGL +++ A+ IY++ ++ L GR+ E + AC+Y A RQ PR++
Sbjct: 145 LGEIDRMASALGLPNNVRETASVIYRRALEEDLLPGRSIEGVSTACVYAAARQAGVPRSL 204
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVK 229
E V+ K EI R ++V+ L +E+ Y+ RF S L ++++A
Sbjct: 205 DEIADVSR-VEKNEIARTYRYVVREL------GLEVQPADPESYVPRFASGLELSDEAEH 257
Query: 230 AAQEAVQKSED 240
A+ +Q +++
Sbjct: 258 RARSLLQNAKE 268
>gi|126466031|ref|YP_001041140.1| transcription initiation factor IIB [Staphylothermus marinus F1]
gi|126014854|gb|ABN70232.1| Transcription initiation factor IIB (TFIIB) [Staphylothermus
marinus F1]
Length = 309
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 122/240 (50%), Gaps = 18/240 (7%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
++++D G+ IC G V+E +D+ EWR F E + R+GGPL + GL+
Sbjct: 19 QIIYDPEMGEYICLLTGEVIEEKVIDDRPEWRAFTPEERERR-SRIGGPLTSTVHDRGLA 77
Query: 74 TVI---AKPTAGGSTE----LLSGSLGKLQARS---SHPDRNLIQAFKSISAMSDRLGLV 123
T I K G E L L + QARS S +RNL QA + +SD+L L
Sbjct: 78 TAIDYSNKDATGKRLEPRRRLEIQKLRRWQARSRIQSSIERNLAQAMNELDRLSDQLNLP 137
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+K+ A IY++ ++ +RGR+ E+++AA +Y ACR+ PRT+ E +++K+
Sbjct: 138 RNVKEEAARIYRRAVEKGLVRGRSIESVIAAAIYAACRELKIPRTLDEIAK-HTKSSRKD 196
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
I R ++K L+ +++ T D++ R L ++ +K A E + ++ L +
Sbjct: 197 IARCYRLLLKELD------IKVQTSDPIDFIPRIAHALNLSGSVMKKAAEILHRARSLGV 250
>gi|448706184|ref|ZP_21700953.1| transcription factor TFIIB cyclin-like protein [Halobiforma
nitratireducens JCM 10879]
gi|445794734|gb|EMA45273.1| transcription factor TFIIB cyclin-like protein [Halobiforma
nitratireducens JCM 10879]
Length = 328
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 122/248 (49%), Gaps = 26/248 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+T+C +CGLV+E SVD EWR F + + ++ RVG P
Sbjct: 33 CPEC--AGNLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAPTTN 89
Query: 66 LLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 90 TMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQALGE 146
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D+ L GR+ E + +C+Y A RQ PR++ E
Sbjct: 147 IDRMASALGLPNNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARQAGVPRSLDEI 206
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ K EI R ++V+ L +E+ Y+ RF S L ++++A A+
Sbjct: 207 ADVSR-VEKNEIARTYRYVVREL------GLEVQPADPESYVPRFASGLDLSDEAEHRAR 259
Query: 233 EAVQKSED 240
+Q +++
Sbjct: 260 ALLQNAKE 267
>gi|448609114|ref|ZP_21660393.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|448615057|ref|ZP_21664085.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445747491|gb|ELZ98947.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445753144|gb|EMA04563.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 316
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 114/240 (47%), Gaps = 19/240 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++V D G+ +C +CGLVL+ +D EWR F N S RVG P+
Sbjct: 23 CPECGS-DQIVTDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 80
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A I
Sbjct: 81 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 140
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ ++ +RGR+ E + + LY ACRQE PR++ E V
Sbjct: 141 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVAEV 200
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +E+ + ++ RF S L ++ + A E +
Sbjct: 201 SR-VPQKEIGRTYRYISQEL------GLELKPVDPKQFVPRFASALELSEEVQAKATEII 253
>gi|448575069|ref|ZP_21641592.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445732748|gb|ELZ84330.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 315
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/251 (30%), Positives = 126/251 (50%), Gaps = 25/251 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ + +V D G+T+C +CGLV+E +D EWR F N + + RVG P
Sbjct: 19 CPECESES-LVSDTEHGETVCDDCGLVVEENEIDHGPEWRAF-NSTEKNQKSRVGAPTTN 76
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 77 MMHDKGLSTNIGWQNKDAYGRS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 133
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ + L GR+ E + + LY A R + PR++ E
Sbjct: 134 IDRMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATSSLYAAARMADTPRSLDEI 193
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
SV+ K EI R ++V+ L+ +E+ Y+ RF S LG++++ + A+
Sbjct: 194 TSVSR-VEKDEIARTYRYVVRELK------LEIKPADPEQYVPRFASELGLSDEPERRAR 246
Query: 233 EAVQKSEDLDI 243
+ ++ +++ +
Sbjct: 247 QLLKNAKEQSV 257
>gi|330507703|ref|YP_004384131.1| transcription initiation factor IIB [Methanosaeta concilii GP6]
gi|328928511|gb|AEB68313.1| transcription initiation factor IIB [Methanosaeta concilii GP6]
Length = 337
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 128/252 (50%), Gaps = 27/252 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRVGG 61
C +CK T +V D+ + +CS+CGLV++ +D+ EWR F DHD RVG
Sbjct: 41 CPECKSHT-LVRDYERAELVCSDCGLVIDENFIDQGPEWRAF-----DHDQRMKRSRVGA 94
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFK 111
P+ + GLST+I + +S L K Q R S+ +RNL A
Sbjct: 95 PMTYTIHDKGLSTMIDWRNRDSYGKTISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 154
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
+ M+ LGL +++ A +Y+K D+ +RGR+ E + AA LY ACRQ N PRT+ E
Sbjct: 155 ELDRMASALGLSRNVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCNVPRTLDE 214
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
V+ ++KEIGR F+ + L ++++ DY+ RFCS L + +
Sbjct: 215 IAEVSR-VSRKEIGRTYRFVSREL------ALKLMPTSPIDYIPRFCSGLNLKGEVQAKG 267
Query: 232 QEAVQKSEDLDI 243
E ++++ + ++
Sbjct: 268 IEILRQAAEKEL 279
>gi|383620637|ref|ZP_09947043.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
gi|448698233|ref|ZP_21698872.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
gi|445780852|gb|EMA31722.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
Length = 328
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 122/248 (49%), Gaps = 26/248 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+T+C +CGLV+E SVD EWR F + + ++ RVG P
Sbjct: 33 CPEC--AGNLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAPTTN 89
Query: 66 LLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 90 TMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQALGE 146
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D+ L GR+ E + +C+Y A RQ PR++ E
Sbjct: 147 IDRMASALGLPNNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARQAGVPRSLDEI 206
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ K EI R ++V+ L +E+ Y+ RF S L ++++A A+
Sbjct: 207 ADVSR-VEKNEIARTYRYVVREL------GLEVQPADPESYVPRFASGLDLSDEAEHRAR 259
Query: 233 EAVQKSED 240
+Q +++
Sbjct: 260 ALLQNAKE 267
>gi|354612022|ref|ZP_09029974.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353191600|gb|EHB57106.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 317
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 124/248 (50%), Gaps = 26/248 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C L VV D G+++C++CGLV+E +D EWR F ++ D RVG P
Sbjct: 23 CPECDGL--VVQDEEHGESVCADCGLVVEEDGIDRGPEWRAFDSKEKDQ-KSRVGAPTTN 79
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
+ GLST I K G S L S K+Q R + +RNL QA
Sbjct: 80 TMHDKGLSTNIDWRDKDAYGNS--LSSNQRQKMQRLRKWNERFRTRDAK-ERNLKQALGE 136
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ GL ++++ A+ IY++ ++ L GR+ E + +C+Y A RQ PR++ E
Sbjct: 137 IDRMASAQGLPDSVRETASVIYRRALEEDLLPGRSIEGVATSCVYAAARQAGVPRSLDEI 196
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ K EI R ++++ L +E+ Y+ RF S+L ++++A A+
Sbjct: 197 ADVSR-VEKAEIARTYRYVIREL------GLEVAPADPESYVPRFASSLELSDEASHRAR 249
Query: 233 EAVQKSED 240
E ++ ++D
Sbjct: 250 ELLKTAKD 257
>gi|301098814|ref|XP_002898499.1| transcription initiation factor IIB, putative [Phytophthora
infestans T30-4]
gi|262104924|gb|EEY62976.1| transcription initiation factor IIB, putative [Phytophthora
infestans T30-4]
Length = 308
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 127/250 (50%), Gaps = 23/250 (9%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV---RVGG 61
+C +C +VV D SAGD +C +CG++L +D++ EWR FAN+ DP RVG
Sbjct: 9 HCRECGS-KDVVTDFSAGDVVCRDCGMILGERIIDDSPEWRTFANDDRGGDPAAKSRVGD 67
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSG-------SLGKLQARSSHPDRNLIQAFKSIS 114
+ L LST + P GG ++ A+ RN+ + I
Sbjct: 68 VADARLDSLSLSTYLVDPKKGGGGADGEAGRKHKRPNISSDSAKVKRMQRNMAR----IQ 123
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQK-PLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
++D L L I + A ++Y + E Q +RG +E++ A L+IACR+ R++KEF
Sbjct: 124 EVADYLSLPKKIVEIALDVYAEAEKQGVNMRGPERESMAVAVLFIACRKAGNARSLKEF- 182
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
A+G K+ IG++ + + L+ E+ Q+ +Y++RFCS LG+ N+ A
Sbjct: 183 EEASGIPKRRIGKSFMSLQRRLDLEVKQAT------TEEYVQRFCSRLGLPNKTQMIAHT 236
Query: 234 AVQKSEDLDI 243
+K++ L++
Sbjct: 237 VAKKADSLEL 246
>gi|58268740|ref|XP_571526.1| transcription initiation factor iib [Cryptococcus neoformans var.
neoformans JEC21]
gi|57227761|gb|AAW44219.1| transcription initiation factor iib, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 447
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 125/255 (49%), Gaps = 27/255 (10%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C +C+ +V +++ GD +C++CG +L VD SEWR FA + + DP RVG N
Sbjct: 104 CPNCRTDPPNIVEEYAKGDLVCADCGTILGDRIVDTRSEWRTFAGDENGDDPSRVGDAGN 163
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDR---------NLIQAFKSISA 115
PLL L T+I+ G T ++ L + QAR++ L F I
Sbjct: 164 PLLGSNHLDTMISHKD--GRTG-IARDLNRAQARANTLSNGIYGKSSVAQLSAVFSRIGE 220
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
D + L +++RA +YK V++ + ++G+N+ A++AAC+ ACR RT +E C
Sbjct: 221 KCDAMQLPRGVRERAQHVYKIVDEARAIKGKNEPAVIAACIVYACRDAKVHRTFQEVCK- 279
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASD--------YLRRFCSNLGMTNQA 227
A +KKE+G+ + +++ Q M ++H S+ L RF + L + N
Sbjct: 280 ALKISKKELGQVFNHVKSVVQSSSAQG-SMVSVHGSNNAQESAEGLLGRFANYLDLGNAV 338
Query: 228 VKA----AQEAVQKS 238
A EAV KS
Sbjct: 339 FNVSKHIAGEAVAKS 353
>gi|57642222|ref|YP_184700.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
gi|14195235|sp|P58109.1|TF2B2_PYRKO RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|12381905|dbj|BAB21262.1| Tk-TFB [Thermococcus kodakaraensis]
gi|57160546|dbj|BAD86476.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
Length = 306
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 121/236 (51%), Gaps = 18/236 (7%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
TE ++D G+ +C++CG V+E VDE EWR F + R G P+ ++ GL
Sbjct: 16 TEFIYDPRRGEIVCAKCGYVIEENVVDEGPEWRAFEPGQREKR-ARTGAPMTLMIHDKGL 74
Query: 73 STVIA---KPTAGGS-TELLSGSLGKL---QAR---SSHPDRNLIQAFKSISAMSDRLGL 122
ST I K G T + L +L Q R + +RNL A + M+ +L L
Sbjct: 75 STDIDWRDKDIHGNQITGMYRNKLRRLRMWQRRMRINDAAERNLAFALSELDRMAAQLRL 134
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+K+ A +Y+K +K +RGR+ E +V+A LY ACR E PRT+ E SV+ +KK
Sbjct: 135 PRHLKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIASVSK-VSKK 193
Query: 183 EIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKS 238
EIGR+ F+ + G + + +Y+ RF LG++ + K A+E + ++
Sbjct: 194 EIGRSYRFMAR------GLGLNLRPTSPIEYVDRFGDALGVSARTKKRAKEILNEA 243
>gi|336254453|ref|YP_004597560.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338442|gb|AEH37681.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 320
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 122/244 (50%), Gaps = 21/244 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T +V D G+ +C ECGLVL +D EWR F + +HD + RVG PL
Sbjct: 21 CPDCETDT-IVHDPDRGERVCEECGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAPLT 77
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G + +L+ R+ + +RNL A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSAEKQGQIHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ ++ +RGR+ E + + LY ACR+E+ PR+++E S
Sbjct: 138 RMVSALGVPDPVKETASVIYRRALEKDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTS 197
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ ++EIGR +I L + + + ++ RFCS L + A E
Sbjct: 198 VSR-VDQREIGRTYRYIADEL------GINLEPTNPRQFVPRFCSELDVGKDVETKAVEI 250
Query: 235 VQKS 238
+ ++
Sbjct: 251 IDET 254
>gi|212224249|ref|YP_002307485.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
gi|212009206|gb|ACJ16588.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
Length = 299
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 120/239 (50%), Gaps = 26/239 (10%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
TE ++D G+ +C CG V+E +D EWR F + S RVG P + LL GL
Sbjct: 13 TEFIYDPGRGEVVCKVCGYVIEENVIDMGPEWRAF-DASQREKRARVGAPESILLHDKGL 71
Query: 73 STVIAKPTAGGSTELLSG-------SLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGL 122
ST I G LSG L K Q+R S +RNL A + ++ +L L
Sbjct: 72 STDI------GIDRNLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLKL 125
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+++ A +Y++ + +RGR+ E+++AAC+Y ACR PRT+ E ++ KK
Sbjct: 126 PRHVEEEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEIADISR-VDKK 184
Query: 183 EIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQ----AVKAAQEAVQK 237
EIGR+ FI ++L + + +DY+ +F LG++ + A+ +EA +K
Sbjct: 185 EIGRSFRFIARNLNLTPKKLF----VKPTDYVNKFADELGLSEKVRRRAIAILEEAYEK 239
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LGL ++ RA I ++ ++ G++ +VAA LYIA
Sbjct: 201 PKKLFVKPTDYVNKFADELGLSEKVRRRAIAILEEAYEKGLTSGKSPAGLVAAALYIAGL 260
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E++ RT +E VA T R KE + K
Sbjct: 261 LEDEKRTQREVAEVARVTEVTVRNRYKELVEK 292
>gi|452206769|ref|YP_007486891.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452082869|emb|CCQ36145.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 324
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 120/244 (49%), Gaps = 22/244 (9%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
+ C +C E +H G+T+C+ECGLV+E +D EWR F + D RVG P
Sbjct: 28 TTCPECDARLEADSEH--GETVCTECGLVVEEDEIDRGPEWRAFDSAEKDQ-KSRVGAPT 84
Query: 64 NPLLSGGGLSTVIA-KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I + +L + K+Q R S +RNL QA
Sbjct: 85 TNMMHDKGLSTNIGWQDKDAYGRQLSTRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 143
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D L GR+ E + A LY A RQ PR++ E
Sbjct: 144 IERMASALGLPENVRETASVIYRRALDDNLLPGRSIEGVSTAALYTAARQAGIPRSLDEI 203
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ + E+ R +I++ L ++E+ Y+ RF S+LG++++ + A+
Sbjct: 204 ERVSR-VDRMELTRTYRYIIREL------NLEVKPADPESYIPRFVSDLGLSDEVERRAR 256
Query: 233 EAVQ 236
E ++
Sbjct: 257 ELIE 260
>gi|110667127|ref|YP_656938.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|385802543|ref|YP_005838943.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|109624874|emb|CAJ51283.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|339728035|emb|CCC39156.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 366
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 120/248 (48%), Gaps = 26/248 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C VV D G+TIC +CGLV+ SVD EWR F + D RVG P
Sbjct: 71 CPECS--GNVVADDEHGETICDDCGLVITEDSVDRGPEWRAFDAKEKDQKS-RVGAPTTN 127
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
+ GLST I + G S L S K+Q R S +RNL QA
Sbjct: 128 TMHDKGLSTNIDWRDRDAYGNS--LSSNQRQKMQRLRKWNERFRTRDSK-ERNLKQALGE 184
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
+ M+ LGL +++ A+ IY++ D+ L GR+ E + +C+Y A R PR++ E
Sbjct: 185 VDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEI 244
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ K E+ R +I + L S+E+ Y+ RF S LG+++++ A+
Sbjct: 245 AEVSR-VPKSEVARTYRYIAREL------SLEVKPADPEQYVPRFASELGLSDESTLRAR 297
Query: 233 EAVQKSED 240
+ +Q +++
Sbjct: 298 QLLQNAKE 305
>gi|429193443|ref|YP_007179121.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|429137661|gb|AFZ74672.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
Length = 340
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 116/229 (50%), Gaps = 21/229 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T +V D G+ +C ECGLVL +D EWR F + +HD + RVG PL
Sbjct: 44 CPDCETDT-IVHDPDRGERVCDECGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAPLT 100
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G + +L+ R+ + +RNL A I
Sbjct: 101 QSMHDRGLTTTIDWRNKDANGRSMSAEKHGQIHRLRVWQERIRTKNAGERNLKYALSEID 160
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ Q +RGR+ E + + LY ACR+E+ PR+++E +
Sbjct: 161 RMVSALGVPNPVKETASVIYRRALQQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTA 220
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGM 223
V+ ++EIGR +I L + + + ++ RFCS L +
Sbjct: 221 VSR-VDQREIGRTYRYIADEL------GINLEPTNPRQFVPRFCSELDV 262
>gi|448324011|ref|ZP_21513453.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
gi|445619909|gb|ELY73423.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
Length = 323
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 116/229 (50%), Gaps = 21/229 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T +V D G+ +C ECGLVL +D EWR F + +HD + RVG PL
Sbjct: 27 CPDCETDT-IVHDPDRGERVCDECGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAPLT 83
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G + +L+ R+ + +RNL A I
Sbjct: 84 QSMHDRGLTTTIDWRNKDANGRSMSAEKHGQIHRLRVWQERIRTKNAGERNLKYALSEID 143
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ Q +RGR+ E + + LY ACR+E+ PR+++E +
Sbjct: 144 RMVSALGVPNPVKETASVIYRRALQQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTA 203
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGM 223
V+ ++EIGR +I L + + + ++ RFCS L +
Sbjct: 204 VSR-VDQREIGRTYRYIADEL------GINLEPTNPRQFVPRFCSELDV 245
>gi|428169704|gb|EKX38635.1| hypothetical protein GUITHDRAFT_115183 [Guillardia theta CCMP2712]
Length = 449
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 86/265 (32%), Positives = 130/265 (49%), Gaps = 35/265 (13%)
Query: 6 CADC--KRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
CA C + L E+ G +CS C + A + SEWR F ++ + R GGP
Sbjct: 131 CAYCGSESLIEI---QEEGSIVCSNCAMENNARIMSTQSEWRTFQDDDKSQEKGRTGGPE 187
Query: 64 NPLLSGGGLSTVIA-------KPTAGGSTELL--SGSLGKLQAR--SSHPDRNLIQAFKS 112
N LL+ G T I KP + ++L + +L K Q R S DR L A+K
Sbjct: 188 NALLNNDGAQTKIEGNDFLTRKPV---TVDVLGSAANLAKSQHRFGSQSGDRALTDAYKK 244
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKV--EDQKPLRGRNQEAIVAACLYIACRQENKPRTVK 170
I + D + L + I+ +A +K E +K + + ++ +C+YIACR+E PRT+K
Sbjct: 245 IDEICDTMNLSSVIRGQAKHNFKSYDEESKKQKKKIPIDPVLTSCIYIACREEGFPRTMK 304
Query: 171 EFCSVANGTTKKEIGRA--KEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAV 228
E C+ A TKKEIG A E I K ++ + ASD + RFCSNL + +
Sbjct: 305 EMCA-ATTLTKKEIGNAFKHELIKKTVQP----------MKASDIIPRFCSNLNLDGNVI 353
Query: 229 -KAAQEAVQKSEDLDIRLILVFFSL 252
+AA+ Q ++ L+I V+ S+
Sbjct: 354 EEAAKHICQAADALNITEGRVYTSI 378
>gi|300712183|ref|YP_003737997.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
gi|448295872|ref|ZP_21485935.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
gi|299125866|gb|ADJ16205.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
gi|445583301|gb|ELY37633.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
Length = 323
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 115/241 (47%), Gaps = 19/241 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V G+ IC +CGLV+E ++D EWR F N RVG P
Sbjct: 29 CPECA-SDNLVKSSDRGELICDDCGLVVEEGNIDPGPEWRAF-NHQERQSKSRVGAPTTQ 86
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 87 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 146
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + A LY ACR+E PR+++E V
Sbjct: 147 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATAALYAACRKEGIPRSLEEISEV 206
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +EM + Y+ RFCS L ++ + A E +
Sbjct: 207 SR-VERKEIGRTYRYISQEL------GLEMRPVDPKKYVPRFCSELELSEEVQSKANEII 259
Query: 236 Q 236
+
Sbjct: 260 E 260
>gi|410670096|ref|YP_006922467.1| transcription initiation factor IIB [Methanolobus psychrophilus
R15]
gi|409169224|gb|AFV23099.1| transcription initiation factor IIB [Methanolobus psychrophilus
R15]
Length = 337
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 130/256 (50%), Gaps = 27/256 (10%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----V 57
A C +C + +V D+ + +CS+CGLV++A VDE EWR F DHD
Sbjct: 37 AKVQCPECGSRS-LVQDYERAELVCSDCGLVVDAEFVDEGPEWRAF-----DHDQRMKRS 90
Query: 58 RVGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLI 107
RVG P+ + GLST+I + +S L K Q R S+ +RNL
Sbjct: 91 RVGAPMTYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLA 150
Query: 108 QAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPR 167
A + M+ LGL T+++ A +Y+K D+ +RGR+ E + AA LY ACRQ + PR
Sbjct: 151 FALSELDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPR 210
Query: 168 TVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQA 227
T+ E V+ ++KEIGR FI + L S+++ DY+ RFCS L + +
Sbjct: 211 TLDEIGEVSR-VSRKEIGRTYRFISREL------SLKLMPTSPIDYVPRFCSGLNLKGEV 263
Query: 228 VKAAQEAVQKSEDLDI 243
E ++++ + ++
Sbjct: 264 QSRGVEILRQASEKEL 279
>gi|448419798|ref|ZP_21580642.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445674712|gb|ELZ27249.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 352
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 120/248 (48%), Gaps = 26/248 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C VV D G+T+C +CGLV+ SVD EWR F ++ D RVG P
Sbjct: 57 CPEC--AGNVVVDDEHGETVCDDCGLVITEDSVDRGPEWRAFDSQEKDQ-KSRVGAPTTN 113
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
+ GLST I + G S L S K+Q R S +RNL QA
Sbjct: 114 TMHDKGLSTNIDWRDRDAYGNS--LSSNQRQKMQRLRKWNERFRTRDSK-ERNLKQALGE 170
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D L GR+ E + +C+Y A R PR++ E
Sbjct: 171 IDRMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCVYAAARMAGVPRSLDEI 230
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ K E+ R +I + L S+E+ Y+ RF S LG++++A A+
Sbjct: 231 SEVSR-VEKSEVARTYRYIAREL------SLEVKPADPEQYVPRFGSELGLSDEAKMRAR 283
Query: 233 EAVQKSED 240
+ ++ +++
Sbjct: 284 QLLKNAKE 291
>gi|448606561|ref|ZP_21658987.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445738769|gb|ELZ90281.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
Length = 288
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 113/224 (50%), Gaps = 13/224 (5%)
Query: 21 AGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPT 80
AG+T+C++CGLV+ Y +D EWR FA++ D +P R G PL GLST I + T
Sbjct: 21 AGETVCTDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTRSRHDRGLSTEIGRST 78
Query: 81 A-GGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKK 136
G + + R S+ +RN + AF I ++ L L I+D+A +++
Sbjct: 79 RIKGRKRRQLARMRRQHNRARISTKRERNQVYAFTEIRRVTSALSLPNHIRDQACSLFES 138
Query: 137 VEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLE 196
+++ LRGR+ E AAC+Y ACR R+V+E C V+ T + + L
Sbjct: 139 AQNEDLLRGRSLEGFAAACVYAACRVAGVSRSVEEVCDVSKSTEAEH-----QAAYGALN 193
Query: 197 AEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
++G + + ++YL RF + L + + + A+E V + D
Sbjct: 194 RDLG--LPVAPADPTEYLPRFATKLDLDSDTERRAREYVADARD 235
>gi|448439550|ref|ZP_21588114.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445691084|gb|ELZ43279.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 346
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 117/240 (48%), Gaps = 20/240 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C TE+V D + + +C +CGLVL+ ++D EWR F N S RVG P+
Sbjct: 25 CPECDS-TEIVTD-ADQELVCEDCGLVLDERNIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A I
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ ++ +RGR+ E + A LY ACRQE PR++ E V
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEVADV 201
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +E+ + ++ RF S+L ++ + A E +
Sbjct: 202 SR-VPQKEIGRTYRYISQEL------GLELKPVDPKQFVPRFASSLELSEEVQSKATEII 254
>gi|375083122|ref|ZP_09730154.1| transcription initiation factor IIB [Thermococcus litoralis DSM
5473]
gi|374742208|gb|EHR78614.1| transcription initiation factor IIB [Thermococcus litoralis DSM
5473]
Length = 299
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 117/228 (51%), Gaps = 12/228 (5%)
Query: 16 VFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTV 75
V+D G+ IC+ CG V++ +D EWR F + S R G P + LL GLST
Sbjct: 16 VYDPERGEVICANCGFVIQENMIDMGPEWRAF-DASQREKRSRTGAPESILLHDKGLSTD 74
Query: 76 IA--KPTAGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRA 130
I + G E + L K Q+R S +RNL A + + RL L +++ A
Sbjct: 75 IGYDRNVKGLMREKIY-RLRKWQSRLRVSDAAERNLAFALSELDRLGARLNLPKHVEEEA 133
Query: 131 NEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEF 190
+Y++ + +RG++ E+++AAC+Y ACR PRT+ E +A KKEIGR+ F
Sbjct: 134 ARLYREAVRKGLIRGKSIESVIAACVYAACRLLKIPRTLDEIADIAK-VDKKEIGRSFRF 192
Query: 191 IVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKS 238
I ++L + + +DY+ +F LG++ + + A E ++K+
Sbjct: 193 IARNLNLTPKKLF----VKPTDYVNKFADELGLSERTRRRAIELLEKA 236
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LGL + RA E+ +K G++ +VAA LYIA
Sbjct: 201 PKKLFVKPTDYVNKFADELGLSERTRRRAIELLEKAYGMGLTSGKSPAGLVAAALYIAGL 260
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E + RT +E VA T R KE + K
Sbjct: 261 LEGEKRTQREVAEVARVTEVTVRNRYKEMVEK 292
>gi|403350014|gb|EJY74453.1| Transcription initiation factor IIB [Oxytricha trifallax]
Length = 388
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 127/247 (51%), Gaps = 30/247 (12%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD--HDPVRVGGPL 63
C +CKR +V +H G +C CGLV + +D++SEWR F++E+S+ +P RVGG L
Sbjct: 91 CDECKRAM-LVTNHVEGTLVCQGCGLVQLSRIIDDSSEWRTFSSETSNGGSNPSRVGGKL 149
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSS--HPDRNLIQAFKSISAMSDRLG 121
NP LS G+ T + T G++E+ K RSS D+ + Q + I + L
Sbjct: 150 NPYLSNHGIDTQV---TGKGASEI-----QKWSDRSSLTAKDKLITQGLRMIKEQAHLLN 201
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +A+EIYK++ED+ L+G++ + VA ++ A R +P+++K S
Sbjct: 202 LKEAAITKASEIYKEIEDRGILKGKSVKGKVAGAIFFASRLVGQPKSLKHILS------- 254
Query: 182 KEIGRAKEFIVKHLEAEMGQSVEM-----GTIHASDYLRRFCSNLGMTNQAVKAAQEAVQ 236
A E VK L + + + E+ TI + D R+ C+ LG+ V AA+ +
Sbjct: 255 -----ATEVTVKELNSCLKRIRELFPDERVTITSKDIARQACNRLGLAMDVVYAAEMTAE 309
Query: 237 KSEDLDI 243
+L+I
Sbjct: 310 NITNLEI 316
>gi|448739366|ref|ZP_21721381.1| transcription initiation factor TFB 2 [Halococcus thailandensis JCM
13552]
gi|445799961|gb|EMA50330.1| transcription initiation factor TFB 2 [Halococcus thailandensis JCM
13552]
Length = 326
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 125/251 (49%), Gaps = 26/251 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + D G+T+C+ CGLV+EA +D EWR F + D RVG P
Sbjct: 31 CPECG--GRLAADSEHGETVCTNCGLVVEADEIDRGPEWRAFDSAERDQKS-RVGAPTTN 87
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G + L S K+Q R S +RNL QA
Sbjct: 88 MMHDKGLSTNIGWQNKDAYGNA--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 144
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL ++++ A+ IY++ D+ L GR+ E + + LY A RQ PR++ E
Sbjct: 145 IDRMASALGLPDSVRETASVIYRRALDEDLLPGRSIEGVSTSALYAAARQAGTPRSLDEI 204
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
+V+ K E+ R ++V+ L +E+ + Y+ RF S+L ++ +A + A+
Sbjct: 205 ATVSR-VGKMELTRTYRYVVREL------GLEIQPADPASYVPRFASDLELSEEAERRAR 257
Query: 233 EAVQKSEDLDI 243
+ ++ ++D I
Sbjct: 258 QLLETAKDEGI 268
>gi|448414464|ref|ZP_21577533.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445682030|gb|ELZ34454.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 340
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 127/250 (50%), Gaps = 24/250 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +C +V D + G+T+C +CGLV+E +VD EWR F +SS+ D RVG P
Sbjct: 45 CPECG--GSLVSDEARGETVCGDCGLVVEEDAVDHGPEWRAF--DSSERDSKSRVGAPTT 100
Query: 65 PLLSGGGLSTVIA---KPTAGGS--------TELLSGSLGKLQARSSHPDRNLIQAFKSI 113
++ GLST I K G S + L + + R+S +RNL QA I
Sbjct: 101 RMMHDKGLSTNIGWQNKDAYGNSLSARQREQMQRLRTWNERFRTRNSK-ERNLKQALGEI 159
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M+ LGL +++ A+ IY++ L GR+ E + A LY A RQ PR++ E
Sbjct: 160 DRMASALGLPENVRETASVIYRRALGDDLLPGRSIEGVATASLYAAARQAGTPRSLDELE 219
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
+V+ K E+ R +IV+ L+ +E+ Y+ RF S LG++++A + A
Sbjct: 220 TVSR-VDKMELTRTYRYIVRELK------LEIEPADPEQYVPRFASELGISDEAERQAHT 272
Query: 234 AVQKSEDLDI 243
++ ++++ I
Sbjct: 273 LLRGAKEVGI 282
>gi|448727279|ref|ZP_21709645.1| transcription initiation factor TFB 2 [Halococcus morrhuae DSM
1307]
gi|445791493|gb|EMA42133.1| transcription initiation factor TFB 2 [Halococcus morrhuae DSM
1307]
Length = 326
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 125/251 (49%), Gaps = 26/251 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + D G+T+C+ CGLV+EA +D EWR F + D RVG P
Sbjct: 31 CPECG--GRLAADSEHGETVCTNCGLVVEADEIDRGPEWRAFDSAERDQKS-RVGAPTTN 87
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G + L S K+Q R S +RNL QA
Sbjct: 88 MMHDKGLSTNIGWQNKDAYGNA--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 144
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL ++++ A+ IY++ D+ L GR+ E + + LY A RQ PR++ E
Sbjct: 145 IDRMASALGLPDSVRETASVIYRRALDEDLLPGRSIEGVSTSALYAAARQAGTPRSLDEI 204
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
+V+ K E+ R ++V+ L +E+ + Y+ RF S+L ++ +A + A+
Sbjct: 205 ATVSR-VGKMELTRTYRYVVREL------GLEIQPADPASYVPRFASDLELSEEAERRAR 257
Query: 233 EAVQKSEDLDI 243
+ ++ ++D I
Sbjct: 258 QLLETAKDEGI 268
>gi|390961741|ref|YP_006425575.1| transcription initiation factor IIB [Thermococcus sp. CL1]
gi|390520049|gb|AFL95781.1| transcription initiation factor IIB [Thermococcus sp. CL1]
Length = 299
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 120/239 (50%), Gaps = 26/239 (10%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
TE ++D G+ IC CG V+E VD EWR F + S RVG P + LL GL
Sbjct: 13 TEFIYDPGRGEIICKVCGYVIEENVVDMGPEWRAF-DASQREKRARVGAPESILLHDKGL 71
Query: 73 STVIAKPTAGGSTELLSG-------SLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGL 122
ST I G LSG L K Q+R S +RNL A + ++ +L L
Sbjct: 72 STDI------GIDRNLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLKL 125
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+++ A +Y++ + +RGR+ E+++AAC+Y +CR PRT+ E ++ KK
Sbjct: 126 PRHVEEEAARLYREAVRKGLIRGRSIESVIAACVYASCRLLKVPRTLDEIADISR-VDKK 184
Query: 183 EIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMT----NQAVKAAQEAVQK 237
EIGR+ FI ++L + + +DY+ +F LG++ +A+ +EA +K
Sbjct: 185 EIGRSFRFIARNLNLTPKKLF----VKPTDYVNKFADELGLSERVRRRAIAILEEAYEK 239
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LGL ++ RA I ++ ++ G++ +VAA LYIA
Sbjct: 201 PKKLFVKPTDYVNKFADELGLSERVRRRAIAILEEAYEKGLTSGKSPAGLVAAALYIAGL 260
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E++ RT +E VA T R KE + K
Sbjct: 261 LEDEKRTQREVAEVARVTEVTVRNRYKELVDK 292
>gi|399574277|ref|ZP_10768036.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399240109|gb|EJN61034.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 324
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 122/249 (48%), Gaps = 22/249 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D G+ +C +CGLV+E +VD EWR F + D RVG P
Sbjct: 29 CPECD--GRLLTDEEHGELVCGDCGLVVEEANVDRGPEWRAFDSAERDSKS-RVGAPTTK 85
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLG-----------KLQARSSHPDRNLIQAFKSIS 114
++ GLST I + LS + + R S +RNL QA I
Sbjct: 86 MMHDKGLSTNIGWQDKDAYGKTLSSRQRQQMQRLRTWNERFRTRDSK-ERNLKQALGEID 144
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ + L GR+ E + A LY + RQ PR++ E S
Sbjct: 145 RMASALGLPQAVRETASVIYRRALAEDLLPGRSIEGVATAALYASARQAGTPRSLDEIAS 204
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ K E+ R ++V+ L+ +E+ Y+ RF S+LG++++A + A+E
Sbjct: 205 VSR-VDKMELTRTYRYVVRELK------LEIQPADPEQYVPRFASDLGLSDEAERRAREL 257
Query: 235 VQKSEDLDI 243
++ +++ I
Sbjct: 258 LRTAKEAGI 266
>gi|448298042|ref|ZP_21488075.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445592249|gb|ELY46438.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 296
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 115/240 (47%), Gaps = 19/240 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T +V G+ +C +CGL++E ++D EWR F N S + RVG P
Sbjct: 2 CDECDGGT-LVKSEDQGELVCDQCGLIVEGANIDRGPEWRAF-NHSERQNKSRVGAPTTQ 59
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I +S L K Q R D RNL A
Sbjct: 60 TMHDKGLTTSIDWKNQDAYGRSISSDKRNQMRRLRKWQERIRTKDAGERNLQFALSETDR 119
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A +Y++ D+ +RGR+ E + + LY ACR E PR+++E +V
Sbjct: 120 MASSLGIPRSVREVACVMYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEVAAV 179
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR ++ + L +EM ++ Y+ RFCS L ++ + A E +
Sbjct: 180 SR-VERKEIGRTYRYVAQEL------GLEMEPVNPKKYVPRFCSELELSEEVQVKANEII 232
>gi|18977749|ref|NP_579106.1| transcription initiation factor IIB [Pyrococcus furiosus DSM 3638]
gi|397651869|ref|YP_006492450.1| transcription initiation factor IIB [Pyrococcus furiosus COM1]
gi|48429160|sp|P61998.1|TF2B_PYRFU RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|48429161|sp|P61999.1|TF2B_PYRWO RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|1206029|gb|AAC43724.1| TFIIB [Pyrococcus furiosus]
gi|18893488|gb|AAL81501.1| transcription initiation factor IIB chain b [Pyrococcus furiosus
DSM 3638]
gi|393189460|gb|AFN04158.1| transcription initiation factor IIB [Pyrococcus furiosus COM1]
Length = 300
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 124/243 (51%), Gaps = 23/243 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C C+ E+++D G+ +C++CG V+E +D EWR F + S R G P +
Sbjct: 7 CPACES-AELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAF-DASQRERRSRTGAPESI 64
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSG-------SLGKLQAR---SSHPDRNLIQAFKSISA 115
LL GLST I G LSG L K Q+R S +RNL A +
Sbjct: 65 LLHDKGLSTEI------GIDRSLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDR 118
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
++ +L L +++ A +Y++ + +RGR+ E+++AAC+Y ACR PRT+ E +
Sbjct: 119 ITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADI 178
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
A KKEIGR+ FI ++L + + + +DY+ +F LG++ + + A E +
Sbjct: 179 AR-VDKKEIGRSYRFIARNL----NLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEIL 233
Query: 236 QKS 238
++
Sbjct: 234 DEA 236
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LGL ++ RA EI + + G++ +VAA LYIA
Sbjct: 201 PKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASL 260
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E + RT +E VA T R KE + K
Sbjct: 261 LEGEKRTQREVAEVARVTEVTVRNRYKELVEK 292
>gi|288930943|ref|YP_003435003.1| transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
gi|288893191|gb|ADC64728.1| Transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
Length = 346
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 127/246 (51%), Gaps = 18/246 (7%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D C +C +V DHS G+ C +CG+V+E +D EWR + +E R G P
Sbjct: 50 DGTCPECGS-PRLVTDHSRGEVFCQDCGIVVEDARLDYGPEWRSYDSERGMQR-ARAGPP 107
Query: 63 LNPLLSGGGLSTVIA--KPTAGG----STELLSGSLGKLQAR---SSHPDRNLIQAFKSI 113
+ L G +T I + + G T + L K Q++ +S +RNL+++ +
Sbjct: 108 VVLTLHDKGFTTTIGNDRDSHGNPLSPKTRIQFTRLRKWQSKIRTNSSAERNLVRSLMEL 167
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
++ LGL +I +RA IY++V RGR ++IVAA +Y ACR+ PRT+ E
Sbjct: 168 ERITSSLGLPKSITERAALIYRRVVSNNLTRGRCIDSIVAAAVYAACREAGLPRTLDEVA 227
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
+ ++ K+ +GRA F+ + L ++ I ++DY+ + C+ LG++ + + A E
Sbjct: 228 AHSS-VDKRSVGRAYRFLARTL------GLKPAPITSTDYVPKICAALGVSGEVQERALE 280
Query: 234 AVQKSE 239
V ++E
Sbjct: 281 IVNEAE 286
>gi|296242903|ref|YP_003650390.1| transcription initiation factor IIB [Thermosphaera aggregans DSM
11486]
gi|296095487|gb|ADG91438.1| Transcription initiation factor IIB (TFIIB) [Thermosphaera
aggregans DSM 11486]
Length = 306
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 114/229 (49%), Gaps = 17/229 (7%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
++V+D G+ +C + G V+E +DE EWR F E R GGPL + G +
Sbjct: 17 KLVYDSEHGEYVCLDTGEVVEEKIIDERPEWRAFTPEERGRR-ARTGGPLTTTVHDMGFA 75
Query: 74 TVIAKPTAGGSTELLSGS------LGKLQARS---SHPDRNLIQAFKSISAMSDRLGLVT 124
T I + L G L K QAR+ + DRNL QA + + D L L +
Sbjct: 76 TAIDYSNKDAAGRKLMGKRQELVKLRKWQARTRILTSMDRNLAQAMNELERLGDLLNLPS 135
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+K+ A IY++ ++ +RGR+ E+++AA +Y+ACR+ PR++ E S +K+I
Sbjct: 136 HVKEEAARIYREAVEKGLVRGRSIESVIAAAVYVACRELKVPRSLDE-VSRHTRIGRKDI 194
Query: 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
R +++ L+ +++GT DY+ R LG+ VK A E
Sbjct: 195 ARCYRLLLRELD------IKVGTTDPVDYVPRIVHALGLPGTVVKKAVE 237
>gi|405121333|gb|AFR96102.1| transcription initiation factor iib [Cryptococcus neoformans var.
grubii H99]
Length = 371
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 138/277 (49%), Gaps = 32/277 (11%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C +C+ +V +++ GD +C++CG +L VD SEWR FA + + DP RVG N
Sbjct: 28 CPNCRTDPPNIVEEYAKGDLVCADCGTILGDRIVDTRSEWRTFAGDENGDDPSRVGDAGN 87
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLI--QAFKSISAMSDRLG- 121
PLL L T+I+ G T + L + QAR++ + + +SA+ R+G
Sbjct: 88 PLLGSNHLDTMISHKD--GRTGIAR-DLNRAQARANTLSNGIYGKSSVAQLSAVFSRIGE 144
Query: 122 ------LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
L +++RA +YK V++ + ++G+N+ A++AAC+ ACR RT +E C
Sbjct: 145 KCDAMLLPRGVRERAQHVYKIVDEARAIKGKNEPAVIAACIVYACRDAKVHRTFQEVCK- 203
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASD--------YLRRFCSNLGMTNQA 227
A +KKE+G+ + +++ Q M ++H S+ L RF + L + N
Sbjct: 204 ALKISKKELGQVFNQVKSVVQSSSAQG-SMVSVHGSNNAQESAEGLLGRFANYLDLGNAV 262
Query: 228 VKA----AQEAVQKS-----EDLDIRLILVFFSLFLV 255
A A EAV KS + I +++F+ L+
Sbjct: 263 FNASKHIAGEAVAKSAIDGRSPVSIAAGVLYFTCVLL 299
>gi|407465001|ref|YP_006775883.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048189|gb|AFS82941.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 303
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 107/210 (50%), Gaps = 16/210 (7%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
+A C C ++V D + G+ CS+CGLV+ D +EWR F+NE + + R G
Sbjct: 7 IAGPKCPSCGD-KKMVTDQTTGELFCSKCGLVVTDKIADTGAEWRSFSNE--EGNKARTG 63
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSL-----------GKLQARSSHPDRNLIQA 109
+ + GLSTVI + + LS S+ + QA SS DRNL QA
Sbjct: 64 AGTSLTMHDMGLSTVIGAANKDATGKPLSASVKSSIERLRTWDSRSQAHSS-ADRNLRQA 122
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
+ + D+L L + ++A IY+K ++K +RGR+ + +VAACLY +CR PRT+
Sbjct: 123 LNEMDKLKDKLALTDAVIEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTETPRTL 182
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEM 199
+ N +K++ R I + LE +M
Sbjct: 183 DDIAKGIN-IRRKDVARCYRLIFRELELKM 211
>gi|297527296|ref|YP_003669320.1| Transcription factor TFIIB cyclin-like protein [Staphylothermus
hellenicus DSM 12710]
gi|297256212|gb|ADI32421.1| Transcription factor TFIIB cyclin-related protein [Staphylothermus
hellenicus DSM 12710]
Length = 313
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 122/240 (50%), Gaps = 18/240 (7%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
++++D G+ IC G V+E +D+ EWR F E + R+GGPL + GL+
Sbjct: 23 QIIYDPEMGEYICLLTGEVIEEKVIDDRPEWRAFTPEERERRS-RIGGPLTSTVHDRGLA 81
Query: 74 TVI---AKPTAGGSTE----LLSGSLGKLQARS---SHPDRNLIQAFKSISAMSDRLGLV 123
T I K G E L L + QARS S +RNL QA + +SD+L L
Sbjct: 82 TAIDYSNKDATGKRLEPRRRLEIQKLRRWQARSRIQSSIERNLAQAMNELDRLSDQLNLP 141
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+K+ A IY++ ++ +RGR+ E+++AA +Y ACR+ PRT+ E S +++K+
Sbjct: 142 RNVKEEAARIYRRAVEKGLVRGRSIESVIAAAIYAACRELKVPRTLDEI-SKHTKSSRKD 200
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
I R ++K L+ +++ T D++ R L + +K A E + K+ + +
Sbjct: 201 IARCYRLLLKELD------IKVQTSDPIDFIPRIAHALNLGGGVMKKAAEILHKARSIGV 254
>gi|241842222|ref|XP_002415383.1| transcription initiation factor iib, putative [Ixodes scapularis]
gi|215509595|gb|EEC19048.1| transcription initiation factor iib, putative [Ixodes scapularis]
Length = 159
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/100 (53%), Positives = 71/100 (71%), Gaps = 1/100 (1%)
Query: 100 SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIA 159
S DR L+ AF+ IS M+DR+ L TI DR+N ++K+V D K L+GR+ +AI +ACLYIA
Sbjct: 26 SSSDRALVNAFREISNMADRINLTKTIVDRSNLLFKQVHDGKTLKGRSNDAIASACLYIA 85
Query: 160 CRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEM 199
CRQE PRT KE C+V+ +KKEIGR + I+K LE +
Sbjct: 86 CRQEGVPRTFKEICAVSK-VSKKEIGRCFKLILKALETSV 124
>gi|448576224|ref|ZP_21642267.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445729904|gb|ELZ81498.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 332
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 114/239 (47%), Gaps = 22/239 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D+ G+T+C ECGLV+E VD EWR F D RVG P
Sbjct: 37 CPECG--GNLVQDNERGETVCGECGLVVEDTVVDRGPEWRAFDAAERDSKS-RVGAPTTK 93
Query: 66 LLSGGGLSTVIA-----------KPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
++ GLST I P + L + + R S +RNL QA I
Sbjct: 94 MMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSK-ERNLKQALGEID 152
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ + L GR+ E + A LY A R + PR++ E
Sbjct: 153 RMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATASLYAAARMADTPRSLDELEK 212
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
V+ K E+ R +IV+ L+ +E+ Y+ RF S LG++++A + A+E
Sbjct: 213 VSR-VEKMELTRTYRYIVRELK------LEIKPADPEQYVPRFASELGLSDEAERQARE 264
>gi|407465174|ref|YP_006776056.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048362|gb|AFS83114.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 315
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 123/248 (49%), Gaps = 19/248 (7%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGG 61
ADS C C + ++ D+ G+ C +CG V+ D EWR F+ E DP R G
Sbjct: 12 ADSTCGRCGK-NSMLTDNVTGERFCGKCGYVITETLQDSGPEWRSFSKEGG-ADPTRTGA 69
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFK 111
P + + GL+T+I+ S + L+ ++ R ++ D+NL QA
Sbjct: 70 PTSLAMHDRGLATIISPMNKDSSGKPLTSTMKSTIERLRTWDSRSKVNASSDKNLRQALS 129
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
+S + D+L L + ++A+ IY+K ++ ++GR+ A++AA LY ACR PRT+K+
Sbjct: 130 ELSTLKDKLSLSDAVIEKASYIYRKALEKGLVKGRSISALIAASLYAACRDTETPRTLKD 189
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
N KK+I R + + LE ++M + + R S++G+T + + A
Sbjct: 190 VSDAGN-IKKKDISRCYRILHQELE------LKMPVVDPVQCVARIASSIGITEKTKRYA 242
Query: 232 QEAVQKSE 239
+ ++ ++
Sbjct: 243 VKVLKDAQ 250
>gi|448411716|ref|ZP_21576072.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
gi|445669650|gb|ELZ22258.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
Length = 324
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 118/241 (48%), Gaps = 26/241 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + D G+T+C ECGLV+E +D EWR F + S + RVG P
Sbjct: 29 CPECG--GNLASDAEHGETVCEECGLVVEEDEIDPGPEWRAF-DASEKDEKSRVGAPTTN 85
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 86 MMHDKGLSTNIGWQDKDAYGNS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 142
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL ++++ A+ IY++ D+ L GR+ E + + LY A RQ PR++ E
Sbjct: 143 IDRMASALGLPESVRETASVIYRRALDEDLLPGRSIEGVATSALYAAARQAGTPRSLDEI 202
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
+V+ K EI R ++V+ L S+E+ Y+ RF S+L + ++ + A+
Sbjct: 203 AAVSR-VGKDEIARTYRYVVREL------SLEIQPADPESYVPRFVSDLDLPDEVERRAR 255
Query: 233 E 233
+
Sbjct: 256 Q 256
>gi|448579977|ref|ZP_21644806.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445722650|gb|ELZ74307.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 325
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 110/225 (48%), Gaps = 18/225 (8%)
Query: 22 GDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA---K 78
G+ I E G+VLE +D EWR F N S + RVG P + GL+T I K
Sbjct: 46 GELIHEETGIVLEEERIDPGPEWRAF-NHSERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 104
Query: 79 PTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRAN 131
G S S L K Q R D RNL A I M+ LG+ ++++ A+
Sbjct: 105 DAYGRSISSRKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 164
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
IY++ D+ +RGR+ E + ACLY ACR+E PR+++E V+ +KEIGR ++
Sbjct: 165 VIYRRALDEDLIRGRSIEGVATACLYAACRKEGIPRSLEEIAEVSR-VERKEIGRTYRYV 223
Query: 192 VKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQ 236
+ L +EM + Y+ RF S L ++ + A E ++
Sbjct: 224 SQEL------GLEMRPVDPKKYVPRFSSELDLSKEVQSKANEIIE 262
>gi|58268742|ref|XP_571527.1| transcription initiation factor iib [Cryptococcus neoformans var.
neoformans JEC21]
gi|57227762|gb|AAW44220.1| transcription initiation factor iib, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 371
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 133/277 (48%), Gaps = 32/277 (11%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C +C+ +V +++ GD +C++CG +L VD SEWR FA + + DP RVG N
Sbjct: 28 CPNCRTDPPNIVEEYAKGDLVCADCGTILGDRIVDTRSEWRTFAGDENGDDPSRVGDAGN 87
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDR---------NLIQAFKSISA 115
PLL L T+I+ G T + L + QAR++ L F I
Sbjct: 88 PLLGSNHLDTMISHKD--GRTGIAR-DLNRAQARANTLSNGIYGKSSVAQLSAVFSRIGE 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
D + L +++RA +YK V++ + ++G+N+ A++AAC+ ACR RT +E C
Sbjct: 145 KCDAMQLPRGVRERAQHVYKIVDEARAIKGKNEPAVIAACIVYACRDAKVHRTFQEVCK- 203
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASD--------YLRRFCSNLGMTNQA 227
A +KKE+G+ + +++ Q M ++H S+ L RF + L + N
Sbjct: 204 ALKISKKELGQVFNHVKSVVQSSSAQG-SMVSVHGSNNAQESAEGLLGRFANYLDLGNAV 262
Query: 228 VKA----AQEAVQKS-----EDLDIRLILVFFSLFLV 255
A EAV KS + I +++F+ L+
Sbjct: 263 FNVSKHIAGEAVAKSAIDGRSPVSIAAGVLYFTCVLL 299
>gi|76801753|ref|YP_326761.1| transcription initiation factor TFB 2 [Natronomonas pharaonis DSM
2160]
gi|76557618|emb|CAI49201.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 322
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/251 (30%), Positives = 124/251 (49%), Gaps = 26/251 (10%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D C +C + +H G+T+C++CGLV+E +D EWR F + D + RVG P
Sbjct: 24 DLTCPECDGRLQADTEH--GETVCADCGLVVEEDEIDRGPEWRAFDSAEKD-EKSRVGAP 80
Query: 63 LNPLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQA 109
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 81 TTKMMHDEGLSTNIGWQDKDAYGNS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQA 137
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
I M+ LGL +++ A+ IY++ D+ L GR+ E + A LY A +Q PR++
Sbjct: 138 LGEIERMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVATASLYAAAKQARTPRSL 197
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVK 229
E V+ K EI R ++V+ L +E+ Y+ RF S++ ++++A +
Sbjct: 198 DEVAKVSR-VEKSEIARTYRYVVREL------GLEIQPADPKSYVPRFASDIELSDEAER 250
Query: 230 AAQEAVQKSED 240
A++ + +++
Sbjct: 251 RARQLLDNAQE 261
>gi|294896448|ref|XP_002775562.1| Transcription initiation factor IIB, putative [Perkinsus marinus
ATCC 50983]
gi|239881785|gb|EER07378.1| Transcription initiation factor IIB, putative [Perkinsus marinus
ATCC 50983]
Length = 307
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 117/246 (47%), Gaps = 22/246 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +CK T++V D++ G IC CGL+LE +D++ EWR F+ +SS D RVGG N
Sbjct: 13 CPECKGKTQIVVDYAQGSVICRNCGLILEMSCIDDSQEWRSFS-DSSGPDRNRVGGTTNN 71
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTT 125
+L GGL T + G++ L + + S + DR L + K + + D L L
Sbjct: 72 MLHSGGLGTSVGF----GNSRLARTHM--IAVNSDNVDRTLNKGHKILRDIMDALALPDN 125
Query: 126 IKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIG 185
I R +I K+++D L+G+ + A Y+ACRQE R++KE + KE+
Sbjct: 126 IYTRCCQILKQMDDSGLLKGKTNYPWLLAVTYMACRQEGAGRSIKEILAAQPTVKDKEVA 185
Query: 186 RAKEFIVKHLE---------AEMGQSVE------MGTIHASDYLRRFCSNLGMTNQAVKA 230
+ + K L+ A G V G + ++ R+C+ LG+ A
Sbjct: 186 KNFWRLEKMLQKASVQEARTAAGGGPVSAAKVGGAGAVAGDTFMPRYCNRLGIPECEKAA 245
Query: 231 AQEAVQ 236
A+Q
Sbjct: 246 DHVAMQ 251
>gi|41615067|ref|NP_963565.1| hypothetical protein NEQ276 [Nanoarchaeum equitans Kin4-M]
gi|40068791|gb|AAR39126.1| NEQ276 [Nanoarchaeum equitans Kin4-M]
Length = 315
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 126/249 (50%), Gaps = 27/249 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +++D G+ IC +CG V++ D EWR F +E+ D R G PL+
Sbjct: 11 CPNCGS-ENIIYDPKTGEYICKDCGYVIKI-EFDLGPEWRHFDDETVDRR--RGGAPLSY 66
Query: 66 LLSGGGLSTVIAKPTAGGSTEL--LSGSLGK--LQARSSHP-------DRNLIQAFKSIS 114
G GLST I G ++E+ L G L + ++ R H DRNL A +
Sbjct: 67 AKVGRGLSTEI-----GDTSEIYKLKGELKQKFMRMRKWHSRVALSAIDRNLKIALHELK 121
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M D+L + +++ A IY+KV ++ RGRN ++A LY+ R+ N PRT++E
Sbjct: 122 KMVDKLNMPKYVEEEAARIYQKVVEKGLARGRNINTLLAGTLYLVIREYNIPRTLEEL-E 180
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
A G +KK+I +A IV+ L ++ I +D++ R+ S L + + A E
Sbjct: 181 KATGISKKDIAKAYRLIVREL------GIKPKPISPADFVYRYASELNLPPEVTATAIEI 234
Query: 235 VQKSEDLDI 243
+++++ +I
Sbjct: 235 IEEAKKKNI 243
>gi|448579035|ref|ZP_21644351.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445724388|gb|ELZ76021.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 288
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 112/227 (49%), Gaps = 13/227 (5%)
Query: 21 AGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPT 80
AG+T+C +CGLV+ Y +D EWR FA++ D +P R G PL GLST I + T
Sbjct: 21 AGETVCGDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTRSRHDRGLSTEIGRST 78
Query: 81 A-GGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKK 136
G L + R SS +RN + AF I ++ L L I+++A +++
Sbjct: 79 RIKGRKRRQFARLRRQHNRARISSKRERNQVYAFTEIRRLTSALSLPNHIREQACALFES 138
Query: 137 VEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLE 196
+++ LRGR+ E AAC+Y ACR R+V+E C VA T + + L
Sbjct: 139 AQNEDLLRGRSLEGFAAACVYAACRVAGIARSVEEVCDVAKATESEH-----HAAYRALN 193
Query: 197 AEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
++G + + ++Y+ RF + L + + A+E V + + I
Sbjct: 194 RDLG--LPVAPTDPTEYIPRFATKLDLDRDVERRAREYVADAREDGI 238
>gi|424811965|ref|ZP_18237205.1| transcription initiation factor IIB, TFIIB [Candidatus
Nanosalinarum sp. J07AB56]
gi|339756187|gb|EGQ39770.1| transcription initiation factor IIB, TFIIB [Candidatus
Nanosalinarum sp. J07AB56]
Length = 358
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 128/250 (51%), Gaps = 27/250 (10%)
Query: 6 CADC--KRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
C +C +R E D + G+ +C ECG +++ +D+++E+R F NE+ R G PL
Sbjct: 61 CPECESQRFEE---DSAQGELVCVECGTIIDEDRIDDSAEYRAF-NEAEREKKARAGQPL 116
Query: 64 NPLLSGGGLSTVIAKPTAGGSTEL--LSGS-------LGKLQAR-SSHPDRNLIQAFKSI 113
G+ST I K GS EL +SG L K R + DRNL A +
Sbjct: 117 TYTKHDMGVSTEIGK----GSGELYKVSGEKRAQYYRLRKWHKRLTKSKDRNLGFALSEL 172
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
++M L L ++ + +Y+K DQ +RGR+ E+I++A LYI R++ PRT+ E
Sbjct: 173 NSMISNLNLPESVHEEVARLYEKAVDQGLVRGRSMESIISALLYIVARKQGTPRTLDEI- 231
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
S A+G K+EIGRA ++ + L + + DY+ RF L ++ + A+
Sbjct: 232 SDASGIEKREIGRAYRYVAREL------GLRILPAKPQDYVPRFAGKLQLSGEVQARARN 285
Query: 234 AVQKSEDLDI 243
++++ + D+
Sbjct: 286 ILEEAREKDL 295
>gi|313126285|ref|YP_004036555.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448286126|ref|ZP_21477361.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312292650|gb|ADQ67110.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445575177|gb|ELY29656.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 330
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 122/249 (48%), Gaps = 22/249 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D + G+T+C +CGLV+E +VD EWR F N S RVG P
Sbjct: 35 CPECG--GSLITDEARGETVCGDCGLVVETDAVDRGPEWRAF-NSSERDSKSRVGAPTTR 91
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSL-----------GKLQARSSHPDRNLIQAFKSIS 114
++ GLST I + LS + + R+S +RNL QA I
Sbjct: 92 MMHDKGLSTNIGWQNKDAYGKALSARQREQMQRLRTWNERFRTRNSK-ERNLKQALGEID 150
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ D L GR+ E + + LY A RQ PR++ E +
Sbjct: 151 RMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARQAGTPRSLDELET 210
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ K E+ R ++V+ L+ +E+ Y+ RF S L ++++A + A++
Sbjct: 211 VSR-VDKMELTRTYRYVVRELK------LEIEPADPEQYVPRFASELDLSDEAERQARDL 263
Query: 235 VQKSEDLDI 243
++ ++ I
Sbjct: 264 LRNAKKAGI 272
>gi|134113140|ref|XP_774595.1| hypothetical protein CNBF2750 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257239|gb|EAL19948.1| hypothetical protein CNBF2750 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 371
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 133/277 (48%), Gaps = 32/277 (11%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C +C+ +V +++ GD +C++CG +L VD SEWR FA + + DP RVG N
Sbjct: 28 CPNCRTDPPNIVEEYAKGDLVCADCGTILGDRIVDTRSEWRTFAGDENGDDPSRVGDAGN 87
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDR---------NLIQAFKSISA 115
PLL L T+I+ G T + L + QAR++ L F I
Sbjct: 88 PLLGSNHLDTMISHKD--GRTGIAR-DLNRAQARANTLSNGIYGKSSVAQLSAVFSRIGE 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
D + L +++RA +YK V++ + ++G+N+ A++AAC+ ACR RT +E C
Sbjct: 145 KCDAMQLPRGVRERAQHVYKIVDEARAIKGKNEPAVIAACIVYACRDAKVHRTFQEVCK- 203
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASD--------YLRRFCSNLGMTNQA 227
A +KKE+G+ + +++ Q M ++H S+ L RF + L + N
Sbjct: 204 ALKISKKELGQVFNHVKSVVQSSSAQG-SMVSVHGSNNAQESAEGLLGRFANYLDLGNAV 262
Query: 228 VKA----AQEAVQKS-----EDLDIRLILVFFSLFLV 255
A EAV KS + I +++F+ L+
Sbjct: 263 FNVSKHIAGEAVAKSAIDGRSPVSIAAGVLYFTCVLL 299
>gi|354611558|ref|ZP_09029514.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353196378|gb|EHB61880.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 325
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 116/241 (48%), Gaps = 26/241 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C VV D G+++C+ECGLV+E S+D EWR F + D RVG P
Sbjct: 32 CPECS--GRVVNDEEHGESVCTECGLVVEEDSIDRGPEWRAFNSNEKDSKS-RVGAPTTN 88
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R+S +RNL QA
Sbjct: 89 MMHDKGLSTNIGWQNKDAYGNS--LSSNQRQKMQRLRKWNERFRTRNSK-ERNLKQALGE 145
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I MS LGL +++ A+ IY++ + L GR+ E + + LY A RQ PR++ E
Sbjct: 146 IERMSSALGLPKEVRETASVIYRRALSEDLLPGRSIEGVATSALYAAARQMQTPRSIDEV 205
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
+V+ E R +IV+ L +E+ + Y+ RF S L + ++ + A+
Sbjct: 206 ANVSR-IDAMEFKRTYRYIVREL------GLEVAPADPASYVPRFASELDLPDEVERRAR 258
Query: 233 E 233
E
Sbjct: 259 E 259
>gi|433638603|ref|YP_007284363.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|448373609|ref|ZP_21557695.1| Transcription factor TFIIB cyclin-related protein [Halovivax
asiaticus JCM 14624]
gi|433290407|gb|AGB16230.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|445661561|gb|ELZ14344.1| Transcription factor TFIIB cyclin-related protein [Halovivax
asiaticus JCM 14624]
Length = 317
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 132/253 (52%), Gaps = 23/253 (9%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RV 59
+ + C DC+ T VV D + +C ECGLVL +D EWR F ++ +H+ + RV
Sbjct: 16 VGEGQCPDCETET-VVHDPDRRELVCEECGLVLSDEPIDYGPEWRAF--DAREHEELSRV 72
Query: 60 GGPLNPLLSGGGLSTVI--AKPTAGGSTELLSGSLGKL------QAR---SSHPDRNLIQ 108
G PL + GL+T I A G + + +G G+L Q R + +RNL
Sbjct: 73 GAPLTQSMHDRGLTTTIDWRNRDANGHS-MDAGKHGQLHRLRVWQERIRTKNAGERNLKY 131
Query: 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT 168
A I M LG+ +K+ A+ IY++ D+ +RGR+ E + + LY++CR+++ PR+
Sbjct: 132 ALSEIDRMVSALGVPKPVKETASVIYRQALDRDLIRGRSIEGVATSALYMSCRKDDIPRS 191
Query: 169 VKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAV 228
++E +V+ ++EIGR +I L+ + + + ++ RFCS L ++++
Sbjct: 192 LEEVTAVSR-VDQREIGRTYRYIADELD------INLEPTNPRQFVPRFCSELDVSSEVE 244
Query: 229 KAAQEAVQKSEDL 241
A + + ++ +L
Sbjct: 245 TTAIDIIDETTEL 257
>gi|222479916|ref|YP_002566153.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222452818|gb|ACM57083.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 317
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 116/240 (48%), Gaps = 20/240 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C TE+V D + + +C +CGLVL+ ++D EWR F N S RVG P+
Sbjct: 25 CPECDS-TEIVTD-ADQELVCEDCGLVLDERNIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A I
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ ++ +RGR+ E + A LY ACRQE PR++ E V
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEVADV 201
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +E+ + ++ RF S L ++ + A E +
Sbjct: 202 SR-VPQKEIGRTYRYISQEL------GLELKPVDPKQFVPRFASALQLSEEVQSKATEII 254
>gi|448396803|ref|ZP_21569251.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445673332|gb|ELZ25893.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 321
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 114/240 (47%), Gaps = 19/240 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T +V G+ +C +CGL++E ++D EWR F N S + RVG P
Sbjct: 27 CDECGGGT-LVKSEDQGELVCDQCGLIVEGTNIDHGPEWRAF-NHSERQNKSRVGAPTTQ 84
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A
Sbjct: 85 TMHDKGLTTSIDWKNQDAYGRSLSSDKRNQMRRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A +Y++ D+ +RGR+ E + + LY ACR E PR+++E V
Sbjct: 145 MASSLGIPRSVREVACVMYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEVSGV 204
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR ++ + L +EM ++ Y+ RFCS L ++ + A E +
Sbjct: 205 SR-VERKEIGRTYRYVAQEL------GLEMEPVNPKKYVPRFCSELELSEEVQAKANEII 257
>gi|448613121|ref|ZP_21663001.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445740018|gb|ELZ91524.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 345
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 119/239 (49%), Gaps = 24/239 (10%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D G+T+C ECGLV+E +D EWR F N S RVG P ++ GLST
Sbjct: 57 LVSDSEHGETVCDECGLVVEENEIDRGPEWRAF-NSSEKDQKSRVGAPTTNMMHDKGLST 115
Query: 75 VIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKSISAMSDRLG 121
I K G S L S K+Q R S +RNL QA I M+ LG
Sbjct: 116 NIGWQNKDAYGRS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGEIDRMASALG 172
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +++ + IY++ + L GR+ E + + LY A R + PR++ E SV+ K
Sbjct: 173 LPENVRETTSVIYRRALNDDLLPGRSIEGVATSSLYAAARMADTPRSLDEITSVSR-VEK 231
Query: 182 KEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
EI R ++V+ L+ +E+ Y+ RF S LG+++++ + A++ ++ +++
Sbjct: 232 DEIARTYRYVVRELK------LEIKPADPEQYVPRFASELGISDESERRARQLLKNAKE 284
>gi|55376477|ref|YP_134329.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448690641|ref|ZP_21695802.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|55229202|gb|AAV44623.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445776603|gb|EMA27580.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 320
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 122/249 (48%), Gaps = 22/249 (8%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D+ C +C+ + +G+ C CGLV E +D EWR F +E D + RVG P
Sbjct: 24 DNICPECQ--GHITRTSDSGEATCESCGLVFEDNPIDHGPEWRAFTSEERD-EKSRVGAP 80
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSG----SLGKLQA-------RSSHPDRNLIQAFK 111
L+ GLST I + +SG L +L+ + +H +RNL QA
Sbjct: 81 TTQLMHDKGLSTTIGWQDKDAYGQAVSGRKRAQLQRLRTWDERFRTKDAH-ERNLKQALG 139
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
IS M+ LGL ++++ A +Y++ +Q L GR+ E + A LY A RQ PR + E
Sbjct: 140 EISRMASALGLPESVRETAGVLYRRAVEQNLLPGRSIEGMSTASLYAAARQHGMPRPLTE 199
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
F V+ K I RA ++ + L E+ M Y+ +F S+L ++++A + +
Sbjct: 200 FADVSR-VEKIRIQRAYRYLSRELGLEIEPEDPM------QYIPQFASSLDVSDEAERRS 252
Query: 232 QEAVQKSED 240
+E ++ + D
Sbjct: 253 RELLEVATD 261
>gi|289192865|ref|YP_003458806.1| Transcription factor TFIIB cyclin-related protein
[Methanocaldococcus sp. FS406-22]
gi|288939315|gb|ADC70070.1| Transcription factor TFIIB cyclin-related protein
[Methanocaldococcus sp. FS406-22]
Length = 334
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 121/238 (50%), Gaps = 22/238 (9%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
EVV D+ + +C++CG V++ D EWR F +E RVG P+ + GLS
Sbjct: 45 EVVKDYERAEIVCAKCGCVIKEKLFDIGPEWRAFDHEQKIKR-CRVGAPMTYTIHDKGLS 103
Query: 74 TVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLV 123
TVI + LS + L K Q R S +RNL A + ++ +LGL
Sbjct: 104 TVIDWRNKDSYGKDLSANKRAQLYRLRKWQRRIRVSDAAERNLAFALSELDRITSKLGLP 163
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+++ A IY+ D+ +RGR+ E +VAA +Y ACR+ PRT+ E A+ +KE
Sbjct: 164 RHVRENAAIIYRGAVDKGLIRGRSIEGVVAAAIYAACRRCRVPRTLDEIAE-ASRVDRKE 222
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMT----NQAVKAAQEAVQK 237
IGR F+ + L ++++ + DY+ RF S LG+ ++A++ Q+A +K
Sbjct: 223 IGRTYRFLAREL------NIKLTPTNPIDYVPRFASELGLPGEVESKAIQILQQAAEK 274
>gi|448470225|ref|ZP_21600422.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
gi|445808303|gb|EMA58375.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
Length = 317
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 116/240 (48%), Gaps = 20/240 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C TE+V D + + +C +CGLVL+ ++D EWR F N S RVG P+
Sbjct: 25 CPECDS-TEIVTD-ADQELVCEDCGLVLDERNIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A I
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ ++ +RGR+ E + A LY ACRQE PR++ E V
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEVADV 201
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +E+ + ++ RF S L ++ + A E +
Sbjct: 202 SR-VPQKEIGRTYRYISQEL------GLELKPVDPKQFVPRFASALQLSEEVQSKATEII 254
>gi|383625409|ref|ZP_09949815.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
gi|448700388|ref|ZP_21699496.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
gi|445779928|gb|EMA30843.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
Length = 321
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 124/244 (50%), Gaps = 21/244 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C +C+ T +V D + +C +CGLVL +D EWR F + +HD + RVG PL
Sbjct: 25 CPECETDT-IVHDPDRSERVCEQCGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAPLT 81
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G + +L+ R+ + +RNL A I
Sbjct: 82 QSMHDRGLTTTIDWRNKDANGRSMSAEKHGQIHRLRVWQERIRTKNAGERNLKYALSEID 141
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ T +K+ A+ IY++ +Q +RGR+ E + + LY ACR+E+ PR+++E +
Sbjct: 142 RMVSALGVPTPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTA 201
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ ++EIGR +I L+ + + + ++ RFCS L + A E
Sbjct: 202 VSR-VDQREIGRTYRYIADELD------INLEPTNPRQFVPRFCSELDVGKDVETKAVEI 254
Query: 235 VQKS 238
++++
Sbjct: 255 IEQT 258
>gi|448347239|ref|ZP_21536116.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445631076|gb|ELY84319.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 296
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 115/240 (47%), Gaps = 19/240 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T +V G+ +C +CGL++E ++D EWR F N S + RVG P
Sbjct: 2 CDECDGGT-LVKSEDQGELVCDQCGLIVEGTNIDHGPEWRAF-NHSERQNKSRVGAPTTQ 59
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I +S L K Q R D RNL A
Sbjct: 60 TMHDKGLTTSIDWKNQDAYGRSISSDKRNQMRRLRKWQERIRTKDAGERNLQFALSETDR 119
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ L + ++++ A IY++ D+ +RGR+ E + + LY ACR E PR+++E +V
Sbjct: 120 MASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEVAAV 179
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR ++ + L ++EM ++ Y+ RFCS L ++ + A E +
Sbjct: 180 SR-VERKEIGRTYRYVAQEL------NLEMEPVNPKKYVPRFCSELELSEEVQVKANEII 232
>gi|448560614|ref|ZP_21634062.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|448582685|ref|ZP_21646189.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445722264|gb|ELZ73927.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445732333|gb|ELZ83916.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
Length = 288
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 114/224 (50%), Gaps = 13/224 (5%)
Query: 21 AGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPT 80
AG+T+C++CGLV+ Y +D EWR FA++ D +P R G PL GLST I + T
Sbjct: 21 AGETVCTDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTRSRHDRGLSTEIGRST 78
Query: 81 A-GGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKK 136
G + + R S+ +RN + AF I ++ L L I+D+A +++
Sbjct: 79 RIKGRKRRQFARMRRQHNRARISTKRERNQVYAFTEIRRVTSALSLPNHIRDQACSLFES 138
Query: 137 VEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLE 196
+++ LRGR+ E AAC+Y ACR R+V+E C V+ T + + L
Sbjct: 139 AQNEDLLRGRSLEGFAAACVYAACRVAGVSRSVEEVCDVSKATEAEH-----QAAYGALN 193
Query: 197 AEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
++G + + ++YL RF + L + + + A+E V ++ +
Sbjct: 194 RDLG--LPVAPADPTEYLPRFATKLDLDSDTERRAREYVAEARE 235
>gi|15789546|ref|NP_279370.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235257|ref|YP_001688457.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195248|sp|Q9HSF7.1|TF2B7_HALSA RecName: Full=Transcription initiation factor IIB 7; Short=TFIIB 7
gi|10579892|gb|AAG18850.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726323|emb|CAP13104.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 323
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 115/241 (47%), Gaps = 19/241 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V + +C++CGLV+E +D EWR F N + RVG P
Sbjct: 29 CPECG-SDNLVKSSDRAELVCNDCGLVVEEEQIDPGPEWRAF-NHQERQEKSRVGAPTTQ 86
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 87 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 146
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 147 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 206
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +EM + Y+ RFCS L +T + A E +
Sbjct: 207 SR-VERKEIGRTYRYISQEL------GLEMKPVDPKKYVPRFCSELELTEEVQSKANEII 259
Query: 236 Q 236
+
Sbjct: 260 E 260
>gi|433592681|ref|YP_007282177.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448335120|ref|ZP_21524272.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|433307461|gb|AGB33273.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445618056|gb|ELY71640.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
Length = 321
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 114/240 (47%), Gaps = 19/240 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T +V G+ +C +CGL++E ++D EWR F N S + RVG P
Sbjct: 27 CDECDGGT-LVKSEDQGELVCDQCGLIVEGSNIDHGPEWRAF-NHSERQNKSRVGAPTTQ 84
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I +S L K Q R D RNL A
Sbjct: 85 TMHDKGLTTAIDWKNQDAYGRSISSDKRSQMRRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ L + ++++ A IY++ D+ +RGR+ E + + LY ACR E PR+++E +V
Sbjct: 145 MASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEVAAV 204
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +EM ++ Y+ RFCS L ++ + A E +
Sbjct: 205 SR-VERKEIGRTYRYIAQEL------GLEMEPVNPKKYVPRFCSELELSEEVQVKANEII 257
>gi|448384057|ref|ZP_21563055.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|445659046|gb|ELZ11858.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 321
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 114/240 (47%), Gaps = 19/240 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T +V G+ +C +CGL++E ++D EWR F N S + RVG P
Sbjct: 27 CDECDGGT-LVKSEDQGELVCDQCGLIVEGSNIDHGPEWRAF-NHSERQNKSRVGAPTTQ 84
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I +S L K Q R D RNL A
Sbjct: 85 TMHDKGLTTAIDWKNQDAYGRSISSDKRSQMRRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ L + ++++ A IY++ D+ +RGR+ E + + LY ACR E PR+++E +V
Sbjct: 145 MASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEVAAV 204
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +EM ++ Y+ RFCS L ++ + A E +
Sbjct: 205 SR-VERKEIGRTYRYIAQEL------GLEMEPVNPKKYVPRFCSELELSEEVQVKANEII 257
>gi|433421465|ref|ZP_20405775.1| transcription initiation factor TFB, partial [Haloferax sp.
BAB2207]
gi|432198878|gb|ELK55114.1| transcription initiation factor TFB, partial [Haloferax sp.
BAB2207]
Length = 294
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 116/246 (47%), Gaps = 22/246 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+TIC +CGLV+E VD EWR F + D RVG P
Sbjct: 37 CPECS--GHLVTDEEHGETICEDCGLVVEDTVVDRGPEWRAFDSAERDSK-SRVGAPTTK 93
Query: 66 LLSGGGLSTVIA-----------KPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
++ GLST I P + L + + R S +RNL QA I
Sbjct: 94 MMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSK-ERNLKQALGEID 152
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ D L GR+ E + +C Y A R PR++ E
Sbjct: 153 RMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSLDEIAE 212
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ K E+ R +I + L S+E+ Y+ RF S LG+++++ A++
Sbjct: 213 VSR-VEKSEVARTYRYIAREL------SLEVKPADPEQYVPRFASELGLSDESKMRARQL 265
Query: 235 VQKSED 240
++ +++
Sbjct: 266 LKNAKE 271
>gi|257389069|ref|YP_003178842.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257171376|gb|ACV49135.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 327
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 118/245 (48%), Gaps = 20/245 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+T+C +CGLV+E +D EWR F + D + RVG P
Sbjct: 32 CPECS--GTLVVDDEHGETVCEDCGLVVETDEIDRGPEWRAFDSSEKD-EKSRVGAPTTN 88
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFKSISA 115
++ GLST I LSG L K R +RNL QA I
Sbjct: 89 MMHDKGLSTNIDWRDKDAYGNSLSGKQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 148
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ +GL +++ A+ IY++ D+ L GR+ E + A +Y A RQ PR++ E V
Sbjct: 149 MASAVGLPENVRETASVIYRRALDENLLPGRSIEGVSTASVYAAARQAGVPRSLDEIDEV 208
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ K EI R ++V+ L +E+ Y+ RF S+L ++++A A++ +
Sbjct: 209 SR-VEKSEIARTYRYVVREL------GLEVAPADPESYVPRFASSLELSDEAEHRARQLL 261
Query: 236 QKSED 240
Q +++
Sbjct: 262 QNAKE 266
>gi|448591526|ref|ZP_21651014.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445733500|gb|ELZ85069.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 331
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 114/239 (47%), Gaps = 22/239 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D+ G+T+C ECGLV+E VD EWR F D RVG P
Sbjct: 36 CPECG--GNLVQDNEHGETVCGECGLVVEDTVVDRGPEWRAFDAAERDSKS-RVGAPTTK 92
Query: 66 LLSGGGLSTVIA-----------KPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
++ GLST I P + L + + R S +RNL QA I
Sbjct: 93 MMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSK-ERNLKQALGEID 151
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ + L GR+ E + A LY A R + PR++ E
Sbjct: 152 RMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATASLYAAARMADTPRSLDELEK 211
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
V+ K E+ R +IV+ L+ +E+ Y+ RF S LG++++A + A+E
Sbjct: 212 VSR-VEKMELTRTYRYIVRELK------LEIKPADPEQYVPRFASELGLSDEAERQARE 263
>gi|448562505|ref|ZP_21635463.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445718823|gb|ELZ70507.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
Length = 332
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 119/249 (47%), Gaps = 22/249 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+TIC ECGLV+E VD EWR F + D RVG P
Sbjct: 37 CPECS--GHLVTDEEHGETICEECGLVVEETVVDRGPEWRAFDSAERDSK-SRVGAPTTK 93
Query: 66 LLSGGGLSTVIA-----------KPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
++ GLST I P + L + + R S +RNL QA I
Sbjct: 94 MMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSK-ERNLKQALGEID 152
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ + L GR+ E + A LY + R PR++ E
Sbjct: 153 RMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATAALYASARMAGTPRSLDELEK 212
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ K E+ R ++V+ L+ +E+ Y+ RF S LG++++A + A++
Sbjct: 213 VSR-VDKMELTRTYRYVVRELK------LEIKPADPEQYVPRFASELGLSDEAERQARQL 265
Query: 235 VQKSEDLDI 243
++ +++ I
Sbjct: 266 LRDAKETGI 274
>gi|407464963|ref|YP_006775845.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048151|gb|AFS82903.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 306
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 124/253 (49%), Gaps = 23/253 (9%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M + CA C + ++ D G+ C +CG V+ S + EWR F + DP R G
Sbjct: 7 MDNPTCARCGK-NSLLTDEVTGENFCGKCGYVITEKSQESGPEWRSFQKDGG-ADPARTG 64
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLG----KLQARSSHP------DRNLIQAF 110
P + ++ GLSTVI S + LS S+ +L+ S DRNL QA
Sbjct: 65 APSSLMIHDMGLSTVINPLNKDASGKPLSTSMKSTIERLRTWDSRSQVHAPVDRNLRQAL 124
Query: 111 KSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVK 170
++ + D++ + + ++A IY+K ++K +RGR+ A++AA LY ACR PRT+K
Sbjct: 125 SDLNKLKDKVSIPANVLEKAAYIYRKALEKKLVRGRSISAMIAASLYAACRDTETPRTLK 184
Query: 171 EFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQ---- 226
+ AN +K+I R + LE ++M + + + R S L ++ +
Sbjct: 185 DVADAAN-VKRKDIARCYRLLHHELE------LKMPVVDSIQCIARISSKLEISEKTKRY 237
Query: 227 AVKAAQEAVQKSE 239
AVK +EA ++ E
Sbjct: 238 AVKVLKEAQERKE 250
>gi|389851971|ref|YP_006354205.1| transcription initiation factor B [Pyrococcus sp. ST04]
gi|388249277|gb|AFK22130.1| Transcription initiation factor B [Pyrococcus sp. ST04]
Length = 302
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 124/249 (49%), Gaps = 26/249 (10%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
YC K +++D+ G+ C+ CG V+ +D EWR F + S + R G P +
Sbjct: 12 YCGSSK----LIYDYERGEIFCAVCGSVVTQDIIDLGQEWRAF-DVSQRNKRSRTGAPES 66
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSG-------SLGKLQAR---SSHPDRNLIQAFKSIS 114
L+ GLST I GS + +SG L K Q+R DRNL A +
Sbjct: 67 ILIHDKGLSTNI------GSDKNVSGLMREKMYRLRKWQSRLRVGDATDRNLAFALTELD 120
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
++ +L L +K+ A +Y++ + +RGR+ E+++AAC+Y ACR PRT+ E
Sbjct: 121 RITSQLKLPRYVKEEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIAD 180
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
+A KKEIGR+ FI ++L + + +DY+ +F LG++ + + A E
Sbjct: 181 IAR-VDKKEIGRSFRFIARNLNLTPKKLF----VKPTDYVTKFADELGLSEKTRRRAVEI 235
Query: 235 VQKSEDLDI 243
++ + L I
Sbjct: 236 LEMAYKLGI 244
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LGL + RA EI + G++ +VAA LYIA
Sbjct: 204 PKKLFVKPTDYVTKFADELGLSEKTRRRAVEILEMAYKLGITSGKSPAGLVAAALYIASL 263
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E + RT +E VA T R KE + K
Sbjct: 264 LEGEKRTQREVAEVARVTEVTVRNRYKELVEK 295
>gi|399575499|ref|ZP_10769257.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
gi|399239767|gb|EJN60693.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
Length = 319
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 122/248 (49%), Gaps = 26/248 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C V+ D G+T+C++CGLV+ SVD EWR F N + RVG P
Sbjct: 24 CPECN--GNVITDEGHGETVCADCGLVVSEDSVDRGPEWRAF-NANEKDSKSRVGAPTTN 80
Query: 66 LLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 81 TMHDKGLSTNIDWRNKDAYGNS--LGSRQRQKMQRLRKWNERFRTRDSK-ERNLKQALGE 137
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL T +++ A+ IY++ + L GR+ E + AC+Y A R PR++ E
Sbjct: 138 IDRMASALGLPTNVRETASVIYRRALNDNLLPGRSIEGVSTACVYAAARMAGVPRSLDEI 197
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ K E+ R ++V+ L+ +E+ Y+ RF S+LG++ + + A+
Sbjct: 198 TDVSR-VDKSEVARTYRYVVRELK------LEVRPADPESYVPRFASSLGLSEETERRAR 250
Query: 233 EAVQKSED 240
+ ++ +++
Sbjct: 251 QLLKNAKE 258
>gi|335441148|ref|ZP_08561869.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334888319|gb|EGM26618.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 325
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 117/241 (48%), Gaps = 26/241 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D G+T+C+ECGLV+E +D EWR F + D RVG P
Sbjct: 30 CPECG--GNLISDTERGETVCTECGLVVEEDEIDPGPEWRAFDAKEKDQK-SRVGAPTTN 86
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 87 MMHDKGLSTNIDWRDKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQALGE 143
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D+ L GR+ E + A +Y A RQ PR++ E
Sbjct: 144 IDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASVYAAARQAGVPRSLDEL 203
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ K EI R ++V+ L +E+ Y+ RF S+L ++ +A + A+
Sbjct: 204 TDVSR-VEKDEIARTYRYVVREL------GLEVRPADPESYVPRFTSDLELSEEAERRAR 256
Query: 233 E 233
E
Sbjct: 257 E 257
>gi|291333532|gb|ADD93228.1| transcription initiation factor IIB [uncultured archaeon
MedDCM-OCT-S08-C54]
Length = 311
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 125/249 (50%), Gaps = 21/249 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DCK T + D+ + +C++CGLVLE VD EWR F + ++ R G P++
Sbjct: 16 CPDCKG-THLKRDYDHAEIVCADCGLVLEDNIVDTGPEWRAF-DMQQENALARAGPPMST 73
Query: 66 LLSGGGLSTVIAKPTA--------GGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSIS 114
L GLST I+ PT + + + K Q R S +RN+ A + +
Sbjct: 74 TLPDKGLSTEIS-PTNRDYYGRSISNKNQSMLFRMRKWQRRARASKSAERNMAVAMREMQ 132
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
A++ L L I++ A IY++ ++ L GR E + A LY ACRQE PRT+ E S
Sbjct: 133 AVATNLKLPRRIQETAAFIYRRAIQEQSLSGRAIEMVACAALYAACRQEGVPRTLTEI-S 191
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
+ ++KEI R + +VK L+ + DYL R CS L ++ + AA++
Sbjct: 192 RHSRYSRKEISRTYQVMVKALKMHSMPPL------PEDYLPRICSKLELSPKVEGAARDL 245
Query: 235 VQKSEDLDI 243
++ ++D+ +
Sbjct: 246 LRAAQDVPL 254
>gi|448589388|ref|ZP_21649547.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445735816|gb|ELZ87364.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 288
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 110/219 (50%), Gaps = 13/219 (5%)
Query: 21 AGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPT 80
+G+T+C++CGLV+ Y +D EWR FA++ D +P R G PL GLST I + T
Sbjct: 21 SGETVCNDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTRSRHDRGLSTEIGRST 78
Query: 81 A-GGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKK 136
G L + R SS +RN + AF I ++ L L I+++A +++
Sbjct: 79 RIKGRKRRQFARLRRQHNRARISSKRERNQVYAFTEIRRLTSALSLPNHIREQACALFES 138
Query: 137 VEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLE 196
+++ LRGR+ E AAC+Y ACR R+V+E C VA T + + L
Sbjct: 139 AQNEDLLRGRSLEGFAAACVYAACRVAGIARSVEEVCDVAKATEAEH-----HAAYRALN 193
Query: 197 AEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
++G + + ++Y+ RF + L + + A+E V
Sbjct: 194 RDLG--LPVAPTDPTEYIPRFATKLDLDRDVERRAREYV 230
>gi|448330751|ref|ZP_21520030.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445611255|gb|ELY65015.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 321
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 115/240 (47%), Gaps = 19/240 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T +V G+ +C +CGL++E ++D EWR F N S + RVG P
Sbjct: 27 CDECDGGT-LVKSEDQGELVCDQCGLIVEGTNIDHGPEWRAF-NHSERQNKSRVGAPTTQ 84
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I +S L K Q R D RNL A
Sbjct: 85 TMHDKGLTTSIDWKNQDAYGRSISSDKRNQMRRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ L + ++++ A IY++ D+ +RGR+ E + + LY ACR E PR+++E +V
Sbjct: 145 MASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEVAAV 204
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR ++ + L ++EM ++ Y+ RFCS L ++ + A E +
Sbjct: 205 SR-VERKEIGRTYRYVAQEL------NLEMEPVNPKKYVPRFCSELELSEEVQVKANEII 257
>gi|386875622|ref|ZP_10117781.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386806378|gb|EIJ65838.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 303
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 106/205 (51%), Gaps = 19/205 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C D K +V D + G+ C +CGLV+ + +EWR F+N+ S+ RVG +
Sbjct: 15 CGDKK----MVTDQTTGELFCGKCGLVVTDKIAETGAEWRSFSNDESNR--TRVGAGTSL 68
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSL-----------GKLQARSSHPDRNLIQAFKSIS 114
+ GLST+I + + LS S+ + QA SS DRNL QA +
Sbjct: 69 TMHDMGLSTIIGAANKDSTGKPLSASVRSSIERLRTWDSRTQAHSS-ADRNLRQALNEMD 127
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
+ D+L L ++ ++A IY+K ++K +RGR+ + +VAACLY +CR PRT+ +
Sbjct: 128 KLKDKLALTDSVVEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTETPRTLDDIAK 187
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
N +K++ R I + LE +M
Sbjct: 188 GIN-IRRKDVARCYRLIFRELELKM 211
>gi|337283805|ref|YP_004623279.1| transcription initiation factor IIB [Pyrococcus yayanosii CH1]
gi|334899739|gb|AEH24007.1| transcription initiation factor IIB [Pyrococcus yayanosii CH1]
Length = 300
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 121/231 (52%), Gaps = 12/231 (5%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
TE ++D G+ +C++CG V+E +D EWR F + S R G P + LL GL
Sbjct: 13 TEFIYDPERGEIVCAKCGYVVEENIIDMGPEWRAF-DASQRERRSRTGAPESILLHDKGL 71
Query: 73 STVIA--KPTAGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
ST I + G E + L + Q+R S +RNL A + ++ +L L ++
Sbjct: 72 STDIGIDRSLTGLMREKMY-RLRRWQSRLRVSDAAERNLAFALSELDRITAQLKLPKHVE 130
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
+ A +Y++ + +RGR+ E+++AAC+Y ACR PRT+ E ++ KKEIGR+
Sbjct: 131 EEAARLYREAVRRGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDISR-VDKKEIGRS 189
Query: 188 KEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKS 238
FI ++L + + +DY+ +F LG++ + + A E ++++
Sbjct: 190 YRFIARNLNLTPKKLF----VKPTDYVNKFADELGLSEKVRRKAVEILEEA 236
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LGL ++ +A EI ++ + G++ +VAA LYIA
Sbjct: 201 PKKLFVKPTDYVNKFADELGLSEKVRRKAVEILEEAYRKGLTSGKSPAGLVAAALYIASL 260
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E + RT +E VA T R KE + K
Sbjct: 261 LEGEKRTQREVAEVARVTEVTVRNRYKELVEK 292
>gi|407462988|ref|YP_006774305.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046610|gb|AFS81363.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 290
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 119/236 (50%), Gaps = 18/236 (7%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ G+ C +CG V+ EWR FA E DP R G P + + GLST
Sbjct: 1 MISDNETGERFCDKCGFVIRETLQSSGPEWRSFAKEGG-TDPTRTGAPTSLTMHDRGLST 59
Query: 75 VIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISAMSDRLGLVT 124
VI++ + + LS S+ R +S D+NL QA +S + D+L L
Sbjct: 60 VISQSNRDATGKPLSTSMKSTIERLRTWDSRSKVTSSADKNLRQALGQLSVLKDKLSLSD 119
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
++ ++A+ IY+K + ++GR+ A++AA +Y ACR PRT+K+ N KK+I
Sbjct: 120 SVNEKASYIYRKALENGLVKGRSISALIAASIYAACRDTETPRTLKDVADAGN-IKKKDI 178
Query: 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
R + + H E E+ +M ++ + R S L +T ++ + A + +Q +++
Sbjct: 179 SRC--YRILHYELEL----KMPVVNPIQCIARISSKLRITEKSKRYAIKVLQVAQE 228
>gi|448288563|ref|ZP_21479761.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|445568948|gb|ELY23523.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 318
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 124/254 (48%), Gaps = 25/254 (9%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
++ C +C + + D G+T+C +CGLV+E +D EWR F D RVG P
Sbjct: 20 ETLCPECGS-SNLTTDAEHGETVCDDCGLVVEEDEIDRGPEWRAFDAREKDQ-KSRVGAP 77
Query: 63 LNPLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQA 109
++ GLST I K G S L S K+Q R + +RNL QA
Sbjct: 78 TTNMMHDRGLSTNIGWQNKDAYGNS--LSSTQRQKMQRLRTWNERFRTRDAK-ERNLKQA 134
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
I M+ LGL +++ A+ IY++ D L GR+ E + + LY A RQ PR++
Sbjct: 135 LGEIDRMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARQAGTPRSL 194
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVK 229
E +V+ K EI R ++V+ L ++E+ Y+ RF S LG+ +++ +
Sbjct: 195 DELETVSR-VDKDEISRTYRYVVREL------NLEIEPADPEQYVPRFASELGLNDESER 247
Query: 230 AAQEAVQKSEDLDI 243
A++ ++ +++ I
Sbjct: 248 HARQLLRTAKEQGI 261
>gi|375083610|ref|ZP_09730629.1| Transcription initiation factor IIB 2 [Thermococcus litoralis DSM
5473]
gi|374741803|gb|EHR78222.1| Transcription initiation factor IIB 2 [Thermococcus litoralis DSM
5473]
Length = 306
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 115/237 (48%), Gaps = 22/237 (9%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+++D S + +CS CG VL +D EWR F + RVG P +L GLST
Sbjct: 18 LIYDPSRAEIVCSNCGYVLAEEIMDLGPEWRAFEPGQREKRS-RVGAPETVMLHDKGLST 76
Query: 75 VIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVT 124
I +SGS L Q R S DRNL A + M +LGL
Sbjct: 77 DIDWRNKDIHGSDISGSIRTKIYRLRMWQRRMRISDAIDRNLAFALSELDRMGSQLGLPR 136
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
I++ A +Y+K K +RGR+ E +V+ACLY ACR N PRT+ E V+ KKEI
Sbjct: 137 NIREIAAVLYRKAVINKLVRGRSIEGMVSACLYAACRIANAPRTLDEIEDVSK-VDKKEI 195
Query: 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQ----AVKAAQEAVQK 237
GR+ ++ + L ++ + DY+ RF LG++ + AVK +A++K
Sbjct: 196 GRSYRYLAREL------NLRLKPTSPIDYVIRFGDQLGISEKTKRRAVKILNQAIEK 246
>gi|389625125|ref|XP_003710216.1| transcription initiation factor IIB [Magnaporthe oryzae 70-15]
gi|351649745|gb|EHA57604.1| transcription initiation factor IIB [Magnaporthe oryzae 70-15]
gi|440464829|gb|ELQ34194.1| transcription initiation factor IIB [Magnaporthe oryzae Y34]
gi|440490541|gb|ELQ70086.1| transcription initiation factor IIB [Magnaporthe oryzae P131]
Length = 371
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 99/185 (53%), Gaps = 7/185 (3%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DC T + + S+GD +C+ECGLV+ A VD SEWR FAN+ + DP RVG N
Sbjct: 24 CNDCGVPTLLQEEVSSGDIVCTECGLVVGARIVDMGSEWRTFANDEAGDDPSRVGDAGNE 83
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLG----KLQARSSHPDRNLIQAFKSISAMSDRLG 121
+ L T + G++ + SL K+Q N I + D++
Sbjct: 84 IYGPSALETKVDMRRDQGASYKIMKSLNAANKKIQNEKGQAAIN--AGMAKIKDLVDKIH 141
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
+ +A ++++VE+ K L+G++ +A VA C++IACR E PRT +E ++ N +K
Sbjct: 142 GGGNVIKQAQSLFREVEEAKALKGKSADAAVAGCIFIACRMEKVPRTFREIHALTN-VSK 200
Query: 182 KEIGR 186
KEIGR
Sbjct: 201 KEIGR 205
>gi|313126970|ref|YP_004037240.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293335|gb|ADQ67795.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
Length = 327
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 124/254 (48%), Gaps = 25/254 (9%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
++ C +C + + D G+T+C +CGLV+E +D EWR F D RVG P
Sbjct: 29 ETLCPECGS-SNLTTDAEHGETVCDDCGLVVEEDEIDRGPEWRAFDAREKDQ-KSRVGAP 86
Query: 63 LNPLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQA 109
++ GLST I K G S L S K+Q R + +RNL QA
Sbjct: 87 TTNMMHDRGLSTNIGWQNKDAYGNS--LSSTQRQKMQRLRTWNERFRTRDAK-ERNLKQA 143
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
I M+ LGL +++ A+ IY++ D L GR+ E + + LY A RQ PR++
Sbjct: 144 LGEIDRMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARQAGTPRSL 203
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVK 229
E +V+ K EI R ++V+ L ++E+ Y+ RF S LG+ +++ +
Sbjct: 204 DELETVSR-VDKDEISRTYRYVVREL------NLEIEPADPEQYVPRFASELGLNDESER 256
Query: 230 AAQEAVQKSEDLDI 243
A++ ++ +++ I
Sbjct: 257 HARQLLRTAKEQGI 270
>gi|448589961|ref|ZP_21650020.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445735076|gb|ELZ86629.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 325
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 110/225 (48%), Gaps = 18/225 (8%)
Query: 22 GDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA---K 78
G+ I E G+VLE +D EWR F N S + RVG P + GL+T I K
Sbjct: 46 GELIHEETGIVLEEDRIDPGPEWRAF-NHSERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 104
Query: 79 PTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRAN 131
G S S L K Q R D RNL A + M+ LG+ ++++ A+
Sbjct: 105 DAYGRSISSRKRSQMHRLRKWQERIRTKDAGERNLQFALSEVDRMASALGVPRSVREVAS 164
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
IY++ D+ +RGR+ E + ACLY ACR+E PR+++E V+ +KEIGR ++
Sbjct: 165 VIYRRALDEDLIRGRSIEGVATACLYAACRKEGIPRSLEEIAEVSR-VERKEIGRTYRYV 223
Query: 192 VKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQ 236
+ L +EM + Y+ RF S L ++ + A E ++
Sbjct: 224 SQEL------GLEMRPVDPKKYVPRFSSELDLSKEVQSKANEIIE 262
>gi|322370540|ref|ZP_08045098.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
gi|320549957|gb|EFW91613.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
Length = 328
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 125/247 (50%), Gaps = 24/247 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C V+ D G+T+C+ECGLV+E SVD EWR F ++ D RVG P
Sbjct: 32 CPECG--GNVISDEGRGETVCAECGLVVEEDSVDRGPEWRAFDSKEKDQKS-RVGAPTTK 88
Query: 66 LLSGGGLSTVIA--KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKSI 113
++ GLST I A G+T L S K+Q R S +RNL QA I
Sbjct: 89 MMHDKGLSTNIGWQDKDAYGNT-LGSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGEI 146
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M+ LGL +++ A+ IY++ D L GR+ E + + +Y A RQ PR++ E
Sbjct: 147 DRMASALGLPKNVRETASVIYRRALDDDLLPGRSIEGVATSAVYAAARQTGVPRSLDEVA 206
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
+V+ + E R +IV+ L +E+ Y+ RF S+L +++++ + A++
Sbjct: 207 AVSR-IDEMEFKRTYRYIVREL------GLEIQPADPLSYVSRFASDLDISDESERRAKD 259
Query: 234 AVQKSED 240
++ +++
Sbjct: 260 LLKTAKE 266
>gi|448666488|ref|ZP_21685133.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|445771619|gb|EMA22675.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 322
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 116/244 (47%), Gaps = 26/244 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C VV D G+T+C +CGLV+E +D EWR F + D RVG P
Sbjct: 29 CPECS--GNVVTDSEHGETVCEDCGLVVEEDEIDHGPEWRAFNSAEKDRK-SRVGAPTTN 85
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 86 MMHDKGLSTNIGWQNKDAYGRS--LSSEQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 142
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ L GR+ E + + LY A R PR++ E
Sbjct: 143 IDRMASALGLPQNVRETASVIYRRALGDDLLPGRSIEGVATSALYAAARMAGNPRSLDEM 202
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ K E+ R +IV+ L S+E+ YL RF S+LG++ + + A+
Sbjct: 203 ARVSR-VEKMELTRTYRYIVREL------SLEVQPADPEHYLPRFISDLGLSEETQRQAR 255
Query: 233 EAVQ 236
+ ++
Sbjct: 256 DLIE 259
>gi|340345049|ref|ZP_08668181.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339520190|gb|EGP93913.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 303
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 102/199 (51%), Gaps = 19/199 (9%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
++V D + G+ C CG V+ D +EWR FAN+ D R G + + GLS
Sbjct: 19 KMVTDETTGELFCGRCGFVVTDKISDTGAEWRSFAND--DTSRARTGAGTSLTMHDMGLS 76
Query: 74 TVIAKPTAGGSTELLSGSL-----------GKLQARSSHPDRNLIQAFKSISAMSDRLGL 122
TVI + + L+ S+ + QA SS DRNL QA + + D+L L
Sbjct: 77 TVIGAANKDSTGKPLTSSMKSSIERLRTWDSRSQAHSS-ADRNLRQALNEMGKLKDKLAL 135
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT-- 180
+ ++A IY+K ++K +RGR+ + +VAACLY ACR PRT+ + VANG
Sbjct: 136 TDAVVEKAAYIYRKAMEKKLVRGRSIQGLVAACLYAACRNTETPRTLDD---VANGINIR 192
Query: 181 KKEIGRAKEFIVKHLEAEM 199
+K++ R I + LE +M
Sbjct: 193 RKDVARCYRLIFRELELKM 211
>gi|298674300|ref|YP_003726050.1| transcription factor tFIIB cyclin-like protein [Methanohalobium
evestigatum Z-7303]
gi|298287288|gb|ADI73254.1| Transcription factor TFIIB cyclin-related protein [Methanohalobium
evestigatum Z-7303]
Length = 341
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 128/252 (50%), Gaps = 27/252 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRVGG 61
C +C + + D+ + +CS+CGLV++A VDE EWR F DHD RVG
Sbjct: 45 CPECGSIN-LEQDYERAELVCSDCGLVVDAELVDEGPEWRAF-----DHDQRMKRSRVGA 98
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFK 111
P+ + GLST+I + +S L K Q R S+ +RNL A
Sbjct: 99 PMTYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 158
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
+ M+ LGL T+++ A +Y+K D+ +RGR+ E + AA LY ACRQ + PRT+ E
Sbjct: 159 ELDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 218
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
V+ ++KEIGR FI + L S+++ DY+ RFCS L + +
Sbjct: 219 IGEVSR-VSRKEIGRTYRFISREL------SLKLMPTSPIDYVPRFCSGLKLKGEVQSKG 271
Query: 232 QEAVQKSEDLDI 243
E ++++ + ++
Sbjct: 272 VEILRQASEKEL 283
>gi|393796911|ref|ZP_10380275.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 303
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C D K +T D + G+ C CG V+ D +EWR FAN+ D + RVG +
Sbjct: 15 CGDKKMIT----DETTGELFCGRCGFVMSEKISDTGAEWRSFAND--DTNRTRVGAGTSL 68
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSL-----------GKLQARSSHPDRNLIQAFKSIS 114
+ GLSTVI + + L+ S+ + QA SS DRNL QA +
Sbjct: 69 TMHDMGLSTVIGPANKDSTGKPLTSSMKSSIERLRTWDSRSQAHSS-ADRNLRQALNEMD 127
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
+ D+L L + ++A IY+K ++K +RGR+ + +VAACLY +CR PRT+ +
Sbjct: 128 KLKDKLALTDAVVEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTETPRTLDDVAK 187
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
N +K++ R I + LE +M
Sbjct: 188 GIN-IRRKDVARCYRLIFRELELKM 211
>gi|448336354|ref|ZP_21525454.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445629246|gb|ELY82538.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
Length = 321
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 115/240 (47%), Gaps = 19/240 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T +V G+ +C +CGL++E ++D EWR F N S + RVG P
Sbjct: 27 CDECDGGT-LVKSEDQGELVCDQCGLIVEGTNIDHGPEWRAF-NHSERQNKSRVGAPTTQ 84
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I +S L K Q R D RNL A
Sbjct: 85 TMHDKGLTTSIDWKNQDAYGRSISSDKRNQMRRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ L + ++++ A IY++ D+ +RGR+ E + + LY ACR E PR+++E +V
Sbjct: 145 MASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEVAAV 204
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR ++ + L ++EM ++ Y+ RFCS L ++ + A E +
Sbjct: 205 SR-VERKEIGRTYRYVAQEL------NLEMEPVNPKKYVPRFCSELELSEEVQVKANEII 257
>gi|397772462|ref|YP_006540008.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448342670|ref|ZP_21531616.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|397681555|gb|AFO55932.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445625065|gb|ELY78435.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 321
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 115/240 (47%), Gaps = 19/240 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T +V G+ +C +CGL++E ++D EWR F N S + RVG P
Sbjct: 27 CDECDGGT-LVKSEDQGELVCDQCGLIVEGTNIDHGPEWRAF-NHSERQNKSRVGAPTTQ 84
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I +S L K Q R D RNL A
Sbjct: 85 TMHDKGLTTSIDWKNQDAYGRSISSDKRNQMRRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ L + ++++ A IY++ D+ +RGR+ E + + LY ACR E PR+++E +V
Sbjct: 145 MASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEVAAV 204
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR ++ + L ++EM ++ Y+ RFCS L ++ + A E +
Sbjct: 205 SR-VERKEIGRTYRYVAQEL------NLEMEPVNPKKYVPRFCSELELSEEVQVKANEII 257
>gi|329765337|ref|ZP_08256917.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|329138243|gb|EGG42499.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 303
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C D K +T D + G+ C CG V+ D +EWR FAN+ D + RVG +
Sbjct: 15 CGDKKMIT----DETTGELFCGRCGFVMSEKISDTGAEWRSFAND--DTNRTRVGAGTSL 68
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSL-----------GKLQARSSHPDRNLIQAFKSIS 114
+ GLSTVI + + L+ S+ + QA SS DRNL QA +
Sbjct: 69 TMHDMGLSTVIGPANKDSTGKPLTSSMKSSIERLRTWDSRSQAHSS-ADRNLRQALNEMD 127
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
+ D+L L + ++A IY+K ++K +RGR+ + +VAACLY +CR PRT+ +
Sbjct: 128 KLKDKLALTDAVVEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTETPRTLDDVAK 187
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
N +K++ R I + LE +M
Sbjct: 188 GIN-IRRKDVARCYRLIFRELELKM 211
>gi|448418737|ref|ZP_21579914.1| transcription factor TFIIB cyclin-related protein [Halosarcina
pallida JCM 14848]
gi|445676131|gb|ELZ28655.1| transcription factor TFIIB cyclin-related protein [Halosarcina
pallida JCM 14848]
Length = 335
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 107/226 (47%), Gaps = 18/226 (7%)
Query: 18 DHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA 77
D + G+T C ECGLV+ +D EWR F N + D RVGGP L GLSTVI
Sbjct: 52 DETHGETTCIECGLVVTEDEIDRGPEWRCF-NAAEKEDRSRVGGPTTKRLHDDGLSTVID 110
Query: 78 KPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
+ LS + R +RNL A + M+ LGL ++
Sbjct: 111 WQNSDAHGNALSSKKRQQMQRLRTWDERFRSKDAQERNLKHALGEVDRMASALGLPEAVR 170
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
+ A+ +Y++ D LRGR+ E + +A LY RQ PR++ E +V+ K I RA
Sbjct: 171 ETASVVYRQALDADLLRGRSIEGVASASLYAGARQMGTPRSLSEVTTVSR-VEKLRIQRA 229
Query: 188 KEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
+I + E+G VE+ H Y+ RF S+L +T++ + E
Sbjct: 230 YSYIAQ----ELGLGVELADPHT--YVTRFVSDLDVTHEVEQIGHE 269
>gi|399578260|ref|ZP_10772009.1| transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236752|gb|EJN57687.1| transcription initiation factor IIB [Halogranum salarium B-1]
Length = 389
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 114/244 (46%), Gaps = 21/244 (8%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGG 61
A C +C+ +E + + +C +CGLVL+ ++D EWR F N S RVG
Sbjct: 94 ATQLCPECE--SEAIV-QDGDELLCEDCGLVLDEQTIDRGPEWRAF-NASERDSKSRVGA 149
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFK 111
P + GL+T I LS L Q R D RNL A
Sbjct: 150 PTTQTMHDKGLTTQIDWKNKDAYGNSLSSRKREQMSRLRTWQERVRTKDAGERNLQFALS 209
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
+ M+ LG+ + ++ A+ IY++ ++ +RGR+ E + CLY ACRQE PR++ E
Sbjct: 210 EMDRMASALGVPKSTREVASVIYRRALNEDLIRGRSIEGVATGCLYAACRQEGIPRSLDE 269
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
V+ +EIGR ++ K L S+EM + +Y+ RF S LG+ + + A
Sbjct: 270 VADVSR-VPYQEIGRTYRYVAKEL------SLEMRPVDPKEYVPRFASELGVPEEVEQKA 322
Query: 232 QEAV 235
+ +
Sbjct: 323 NDVI 326
>gi|448476239|ref|ZP_21603403.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445815788|gb|EMA65707.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 334
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 111/222 (50%), Gaps = 17/222 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T V + + +C++CGLV++A +D EWR FA++ D +P R G PL
Sbjct: 55 CPECGGRTRV----DSSERVCTDCGLVVDADRIDHGPEWRSFADD--DTNPKRTGAPLTR 108
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQ---AR-SSHPDRNLIQAFKSISAMSDRLG 121
GLST I + T + + + Q AR S+ DRN + A+ I ++ LG
Sbjct: 109 SRHDRGLSTEIGRSTRVKGRKRRRLARMRTQHNRARISTKRDRNKVYAYTEIRRLTGALG 168
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +++D A ++ +D+ LRGR+ E AAC+Y+ACR RTV E C A T
Sbjct: 169 LPNSVRDTACTLFDSAQDESLLRGRSLEGFAAACVYVACRTAAVARTVSEVCDAAKATED 228
Query: 182 KEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGM 223
+ + E+G + +G ++YL RF S+L +
Sbjct: 229 EH-----RAAFDAMNRELG--LPIGPTGPAEYLPRFASDLDV 263
>gi|354612079|ref|ZP_09030031.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353191657|gb|EHB57163.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 320
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 114/241 (47%), Gaps = 19/241 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V + +C +CGLV+E +D EWR F N + RVG P
Sbjct: 26 CPECS-SDNLVKSSDRAELVCEDCGLVVEEEQIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 203
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +EM + Y+ RFCS L ++ + A E +
Sbjct: 204 SR-VERKEIGRTYRYISQEL------GLEMKPVDPKKYVPRFCSELELSEEVQSKANEII 256
Query: 236 Q 236
+
Sbjct: 257 E 257
>gi|20089499|ref|NP_615574.1| transcription initiation factor IIB [Methanosarcina acetivorans
C2A]
gi|24212485|sp|Q8TT29.1|TF2B_METAC RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|19914407|gb|AAM04054.1| archaeal transcription factor B [Methanosarcina acetivorans C2A]
Length = 337
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 128/252 (50%), Gaps = 27/252 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRVGG 61
C +C +V D+ + +C +CGLV++A VDE EWR F DHD RVG
Sbjct: 41 CPECGSRN-LVHDYERAELVCGDCGLVIDADFVDEGPEWRAF-----DHDQRMKRSRVGA 94
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFK 111
P+ + GLST+I + +S L K Q R S+ +RNL A
Sbjct: 95 PMTYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 154
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
+ M+ LGL T+++ A +Y+K D+ +RGR+ E + AA LY ACRQ + PRT+ E
Sbjct: 155 ELDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 214
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
V+ ++KEIGR FI + L ++++ DY+ RFCS L + + +
Sbjct: 215 IEEVSR-VSRKEIGRTYRFISREL------ALKLMPTSPIDYVPRFCSGLNLKGEVQSKS 267
Query: 232 QEAVQKSEDLDI 243
E ++++ + ++
Sbjct: 268 VEILRQASEKEL 279
>gi|73668919|ref|YP_304934.1| transcription initiation factor IIB [Methanosarcina barkeri str.
Fusaro]
gi|72396081|gb|AAZ70354.1| Transcription initiation factor IIB (TFIIB) [Methanosarcina barkeri
str. Fusaro]
Length = 337
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 128/252 (50%), Gaps = 27/252 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRVGG 61
C +C +V D+ + +C +CGLV++A VDE EWR F DHD RVG
Sbjct: 41 CPECGSRN-LVHDYERAELVCGDCGLVIDADFVDEGPEWRAF-----DHDQRMKRSRVGA 94
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFK 111
P+ + GLST+I + +S L K Q R S+ +RNL A
Sbjct: 95 PMTYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 154
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
+ M+ LGL T+++ A +Y+K D+ +RGR+ E + AA LY ACRQ + PRT+ E
Sbjct: 155 ELDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 214
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
V+ ++KEIGR FI + L ++++ DY+ RFCS L + + +
Sbjct: 215 IEEVSR-VSRKEIGRTYRFISREL------ALKLMPTSPIDYVPRFCSGLNLKGEVQSKS 267
Query: 232 QEAVQKSEDLDI 243
E ++++ + ++
Sbjct: 268 VEILRQASEKEL 279
>gi|448624536|ref|ZP_21670484.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445749741|gb|EMA01183.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 331
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 120/249 (48%), Gaps = 22/249 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+TIC ECGLV+E VD EWR F + D RVG P
Sbjct: 37 CPECS--GHLVTDEEHGETICEECGLVVEDTVVDRGPEWRAFDSAERDSKS-RVGAPTTK 93
Query: 66 LLSGGGLSTVIA-----------KPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
++ GLST I P + L + + R S +RNL QA I
Sbjct: 94 MMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSK-ERNLKQALGEID 152
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ + L GR+ E + A LY + R + PR++ E
Sbjct: 153 RMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATAALYASARMASTPRSLDELEK 212
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ K E+ R +IV+ L+ +E+ Y+ RF S LG+++++ + A++
Sbjct: 213 VSR-VDKMELTRTYRYIVRELK------LEIKPADPEQYVPRFASELGLSDESERQARQL 265
Query: 235 VQKSEDLDI 243
++ +++ +
Sbjct: 266 LRDAKETGV 274
>gi|409730080|ref|ZP_11271675.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
gi|448723223|ref|ZP_21705747.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
gi|445787965|gb|EMA38691.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
Length = 321
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 117/241 (48%), Gaps = 19/241 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V G+ IC +CGLV+E ++D EWR F N + RVG P
Sbjct: 27 CPECD-SENLVKSADRGELICEDCGLVVEEENIDPGPEWRAF-NHAERQQKSRVGAPTTQ 84
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 85 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 145 MASALGVPRSVREVASVIYRRSLAEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 204
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR ++ + L ++EM + Y+ RFCS L ++ + A + +
Sbjct: 205 SR-VNRKEIGRTYRYVSQEL------ALEMRPVDPKKYVPRFCSELTLSEEVQSKANDII 257
Query: 236 Q 236
+
Sbjct: 258 E 258
>gi|116753584|ref|YP_842702.1| transcription initiation factor IIB [Methanosaeta thermophila PT]
gi|121694369|sp|A0B5T8.1|TF2B_METTP RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|116665035|gb|ABK14062.1| Transcription initiation factor IIB (TFIIB) [Methanosaeta
thermophila PT]
Length = 337
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 118/237 (49%), Gaps = 28/237 (11%)
Query: 3 DSYCADCKRL--TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP---- 56
D Y +C +V D+ + +CSECGLV++ +D+ EWR F DHD
Sbjct: 35 DKYTVECPECGSRALVRDYERAELVCSECGLVIDENFIDQGPEWRAF-----DHDQRMKR 89
Query: 57 VRVGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNL 106
RVG P+ + GLST+I + +S L K Q R S+ +RNL
Sbjct: 90 SRVGAPMTYTIHDKGLSTMIDWRNRDSYGKTISSKNRAQLYRLRKWQRRIRVSNATERNL 149
Query: 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKP 166
A + M+ LGL +++ A IY++ ++ +RGR+ E + AA LY ACRQ N P
Sbjct: 150 AFALSELDRMASALGLSRNVRETAAVIYRRAVEKNLIRGRSIEGVAAAALYAACRQCNVP 209
Query: 167 RTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGM 223
RT+ E V+ ++KEIGR F+ + L S+++ DY+ RFCS L +
Sbjct: 210 RTLDEIAEVSR-VSRKEIGRTYRFVSREL------SLKLMPTSPIDYIPRFCSGLNL 259
>gi|448604552|ref|ZP_21657719.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445743961|gb|ELZ95441.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
Length = 331
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 120/249 (48%), Gaps = 22/249 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+TIC ECGLV+E VD EWR F + D RVG P
Sbjct: 37 CPECS--GHLVTDEEHGETICEECGLVVEDTVVDRGPEWRAFDSAERDS-KSRVGAPTTK 93
Query: 66 LLSGGGLSTVIA-----------KPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
++ GLST I P + L + + R S +RNL QA I
Sbjct: 94 MMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSK-ERNLKQALGEID 152
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ + L GR+ E + A LY + R + PR++ E
Sbjct: 153 RMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATAALYASARMASTPRSLDELEK 212
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ K E+ R +IV+ L+ +E+ Y+ RF S LG+++++ + A++
Sbjct: 213 VSR-VDKMELTRTYRYIVRELK------LEIKPADPEQYVPRFASELGLSDESERQARQL 265
Query: 235 VQKSEDLDI 243
++ +++ +
Sbjct: 266 LRDAKETGV 274
>gi|386002924|ref|YP_005921223.1| Transcription initiation factor IIB [Methanosaeta harundinacea 6Ac]
gi|357210980|gb|AET65600.1| Transcription initiation factor IIB [Methanosaeta harundinacea 6Ac]
Length = 337
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 123/243 (50%), Gaps = 26/243 (10%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRVGGPLNPLLSGG 70
+V D+ + +CS+CGLV++ +D+ EWR F DHD RVG P+ +
Sbjct: 49 LVHDYERAELVCSDCGLVIDENFIDQGPEWRAF-----DHDQRMKRSRVGAPMTYTIHDK 103
Query: 71 GLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFKSISAMSDRL 120
GLST+I + +S L K Q R S+ +RNL A + M+ L
Sbjct: 104 GLSTMIDWRNRDSYGKTISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRMASAL 163
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GL +++ A IY+K D+ +RGR+ E + AA LY ACRQ N PRT+ E V+ +
Sbjct: 164 GLSRNVRETAAVIYRKAVDKNLIRGRSIEGVAAAALYAACRQCNVPRTLDEIAEVSR-VS 222
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
+KEIGR F+ + L ++++ DY+ RFCS L + + E ++++ +
Sbjct: 223 RKEIGRTYRFVSREL------ALKLMPTSPIDYIPRFCSGLSLKGEVQAKGIEILRQAAE 276
Query: 241 LDI 243
++
Sbjct: 277 KEL 279
>gi|448294148|ref|ZP_21484234.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
gi|445587483|gb|ELY41742.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
Length = 298
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 122/239 (51%), Gaps = 22/239 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C L V+ D G+TIC +CGLVL+ VD +WR + ++ D + R+G P
Sbjct: 2 CPECDGL--VIQDDEHGETICEDCGLVLDTDVVDHGPDWRAYDSKERD-EKSRIGAPTTQ 58
Query: 66 LLSGGGLSTVIA---KPTAGGS-TELLSGSLGKLQ-------ARSSHPDRNLIQAFKSIS 114
L+ GLST+I + G + +E L +L+ + +H +RNL QAF I
Sbjct: 59 LMHDKGLSTMIGWRDRDAYGHAISEQKRAQLQRLRQWDERFRTKDAH-ERNLKQAFGEIR 117
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL I++ A +Y++ + L GR+ E + A LY A RQ + PRT+ E +
Sbjct: 118 RMASALGLPDPIRETAGVLYRRAVEDDLLPGRSIEGMATASLYTAARQHSTPRTLAELET 177
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
V+ + I RA ++ + L + M + Y+ +F S L ++++A + A++
Sbjct: 178 VSR-VKRLRIQRAYRYLSREL------GLRMEPVDPLQYVPQFASELNVSDEATRRARD 229
>gi|268324098|emb|CBH37686.1| transcription initiation factor IIB [uncultured archaeon]
gi|268326415|emb|CBH40003.1| transcription initiation factor IIB [uncultured archaeon]
Length = 319
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 125/242 (51%), Gaps = 18/242 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D+ + C++CGLV+ VD EWR F +E + RVG P+
Sbjct: 34 CPECGS-KNLVRDYGKAELFCADCGLVIAENIVDLGPEWRAFDSEQASKR-ARVGAPMTY 91
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSH----PDRNLIQAFKSISAMSDRLG 121
+ GLST++ + G L K + + +H +R+ I A I M+ L
Sbjct: 92 RIHDKGLSTLVTWSSPGQGQYKL-----KKRQQWTHIANTTERSFIFALSEIDRMASALR 146
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L I++ A+ +Y+K + +RGR+ E I +A LY++CRQ PRT++E V+ +
Sbjct: 147 LPINIREAASMLYRKAMKKHLIRGRSIEGITSAILYVSCRQYGVPRTLEEVRDVSR-VGQ 205
Query: 182 KEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDL 241
KEI RA F+++ L+ ++ + + D++ RFCS L ++ + A E ++K+ +
Sbjct: 206 KEISRAYRFLLRELDLKVTPASPV------DFVPRFCSQLDLSGEIRSKAVEIIKKASEA 259
Query: 242 DI 243
++
Sbjct: 260 EL 261
>gi|21227874|ref|NP_633796.1| transcription initiation factor IIB [Methanosarcina mazei Go1]
gi|452210347|ref|YP_007490461.1| Transcription initiation factor B [Methanosarcina mazei Tuc01]
gi|332321738|sp|P0CW15.1|TF2B_METMA RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|332321739|sp|P0CW14.1|TF2B_METMZ RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|14586422|emb|CAC42919.1| transcription factor B (TFB) [Methanosarcina mazei]
gi|20906289|gb|AAM31468.1| Transcription initiation factor IIB [Methanosarcina mazei Go1]
gi|452100249|gb|AGF97189.1| Transcription initiation factor B [Methanosarcina mazei Tuc01]
Length = 337
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 128/252 (50%), Gaps = 27/252 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRVGG 61
C +C +V D+ + +C +CGLV++A VDE EWR F DHD RVG
Sbjct: 41 CPECGSRN-LVHDYERAELVCGDCGLVIDADFVDEGPEWRAF-----DHDQRMKRSRVGA 94
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFK 111
P+ + GLST+I + +S L K Q R S+ +RNL A
Sbjct: 95 PMTYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 154
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
+ M+ LGL T+++ A +Y+K D+ +RGR+ E + AA LY ACRQ + PRT+ E
Sbjct: 155 ELDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 214
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
V+ ++KEIGR FI + L ++++ DY+ RFCS L + + +
Sbjct: 215 IEEVSR-VSRKEIGRTYRFISREL------ALKLMPTSPIDYVPRFCSGLNLKGEVQSKS 267
Query: 232 QEAVQKSEDLDI 243
E ++++ + ++
Sbjct: 268 VEILRQASEKEL 279
>gi|322369913|ref|ZP_08044475.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
gi|320550249|gb|EFW91901.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
Length = 320
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 124/248 (50%), Gaps = 26/248 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +++ D G+TIC +CGLV+E +VD EWR F + ++ RVG P
Sbjct: 25 CPECS--GKLIADSGHGETICEDCGLVVEVDNVDRGPEWRAF-DAKEKNEKSRVGAPTTN 81
Query: 66 LLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 82 TMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQALGE 138
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ ++ L GR+ E + +C+Y A RQ PR++ E
Sbjct: 139 IDRMASALGLPDNVREMASVIYRRALNEDLLPGRSIEGVSTSCVYAAARQAGVPRSLDEI 198
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ K E+ R ++V+ L S+E+ Y+ RF S L ++++A A+
Sbjct: 199 TEVSR-VDKSEVARTYRYVVREL------SLEVKPADPESYVPRFASGLELSDEAEHRAR 251
Query: 233 EAVQKSED 240
E ++ +++
Sbjct: 252 ELLRNAKE 259
>gi|448677609|ref|ZP_21688799.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|448687989|ref|ZP_21693957.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|445773284|gb|EMA24317.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445779780|gb|EMA30696.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 322
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 116/244 (47%), Gaps = 26/244 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C VV D G+T+C +CGLV+E +D EWR F + D RVG P
Sbjct: 29 CPECS--GNVVTDTEHGETVCEDCGLVVEEDEIDHGPEWRAFNSAEKDRKS-RVGAPTTN 85
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 86 MMHDKGLSTNIGWQNKDAYGRS--LSSEQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 142
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ ++ IY++ L GR+ E + + LY A R PR++ E
Sbjct: 143 IDRMASALGLPQNVRETSSVIYRRALGDDLLPGRSIEGVATSALYAAARMAGNPRSLDEM 202
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ K E+ R +IV+ L S+E+ YL RF S+LG++ + + A+
Sbjct: 203 ARVSR-VEKMELTRTYRYIVREL------SLEVQPADPEHYLPRFISDLGLSEETQRQAR 255
Query: 233 EAVQ 236
+ V+
Sbjct: 256 DLVE 259
>gi|300713081|ref|YP_003738893.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
gi|299126765|gb|ADJ17102.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
Length = 345
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 122/239 (51%), Gaps = 22/239 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C L V+ D G+TIC +CGLVL+ VD +WR + ++ D + R+G P
Sbjct: 49 CPECDGL--VIQDDEHGETICEDCGLVLDTDVVDHGPDWRAYDSKERD-EKSRIGAPTTQ 105
Query: 66 LLSGGGLSTVIA---KPTAGGS-TELLSGSLGKLQ-------ARSSHPDRNLIQAFKSIS 114
L+ GLST+I + G + +E L +L+ + +H +RNL QAF I
Sbjct: 106 LMHDKGLSTMIGWRDRDAYGHAISEQKRAQLQRLRQWDERFRTKDAH-ERNLKQAFGEIR 164
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL I++ A +Y++ + L GR+ E + A LY A RQ + PRT+ E +
Sbjct: 165 RMASALGLPDPIRETAGVLYRRAVEDDLLPGRSIEGMATASLYTAARQHSTPRTLAELET 224
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
V+ + I RA ++ + L + M + Y+ +F S L ++++A + A++
Sbjct: 225 VSR-VKRLRIQRAYRYLSREL------GLRMEPVDPLQYVPQFASELNVSDEATRRARD 276
>gi|257052263|ref|YP_003130096.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256691026|gb|ACV11363.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 323
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 118/245 (48%), Gaps = 26/245 (10%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGG 61
+D C +C +++ D G+T+C CGLV+E +D EWR F + D RVG
Sbjct: 24 SDVQCPECD--GKLISDTERGETVCQGCGLVVEEDEIDPGPEWRAFDAKEKDQ-KSRVGA 80
Query: 62 PLNPLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQ 108
P ++ GLST I K G S L S K+Q R S +RNL Q
Sbjct: 81 PTTNMMHDKGLSTNIDWRDKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQ 137
Query: 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT 168
A I M+ LGL +++ A+ IY++ D+ L GR+ E + A +Y A RQ PR+
Sbjct: 138 ALGEIDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASVYAAARQAGVPRS 197
Query: 169 VKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAV 228
+ E V+ K EI R ++V+ L +E+ Y+ RF S+L ++ +A
Sbjct: 198 LDELTDVSR-VEKDEIARTYRYVVREL------GLEVRPADPESYVPRFTSDLELSEEAE 250
Query: 229 KAAQE 233
+ A+E
Sbjct: 251 RRARE 255
>gi|313127037|ref|YP_004037307.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448288496|ref|ZP_21479694.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293402|gb|ADQ67862.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445568881|gb|ELY23456.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 343
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 124/251 (49%), Gaps = 25/251 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T +V D G+T+C +CGLV++ +D EWR F + D RVG P
Sbjct: 38 CPECSSPT-LVTDDGRGETVCEDCGLVVDEDEIDRGPEWRAFDSAERDQK-SRVGAPTTN 95
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 96 MMHDRGLSTNIGWQNKDAYGNS--LSSNQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 152
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL ++++ A+ IY++ + L GR+ E I A L+ A R PR++ E
Sbjct: 153 IDRMASALGLPESVRETASVIYRRALEDDLLPGRSIEGIATASLHAAARMAQVPRSLDEV 212
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ ++E RA +IV+ L S+E+ ++YL RF S++ + + + A+
Sbjct: 213 AHVSR-VDEEEFERAYRYIVREL------SLEIKPADPTEYLPRFASDIDVPKETERTAR 265
Query: 233 EAVQKSEDLDI 243
E ++ ++ + I
Sbjct: 266 ELLENAKTVGI 276
>gi|15789908|ref|NP_279732.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235629|ref|YP_001688829.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195246|sp|Q9HRE6.1|TF2B2_HALSA RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|10580312|gb|AAG19212.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726695|emb|CAP13481.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 325
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 123/247 (49%), Gaps = 26/247 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V+ D G+++C +CGLV+E +D EWR F N + + RVG P
Sbjct: 32 CPECG--GQVIDDEEHGESVCVDCGLVVEENGIDRGPEWRAF-NSTEKDEKSRVGAPTTN 88
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R+S +RNL QA
Sbjct: 89 MMHDKGLSTNIGWQDKDAYGNS--LSSNQRQKMQRLRKWNERFRTRNSK-ERNLKQALGE 145
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ + L GR+ E + A LY + RQ + PR++ E
Sbjct: 146 IERMASALGLPKEVRETASVIYRRALSEDLLPGRSIEGVATAALYASARQLSTPRSIDEV 205
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
+V+ + E R +IV+ L S+E+ + Y+ RF S+L + ++ + ++
Sbjct: 206 ANVSR-IDEMEFKRTYRYIVREL------SLEVAPADPAQYVPRFASDLDLPDEVERRSR 258
Query: 233 EAVQKSE 239
E + ++
Sbjct: 259 ELISNAQ 265
>gi|156938159|ref|YP_001435955.1| transcription initiation factor IIB [Ignicoccus hospitalis KIN4/I]
gi|189029852|sp|A8AC96.1|TF2B_IGNH4 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|156567143|gb|ABU82548.1| Transcription initiation factor IIB (TFIIB) [Ignicoccus hospitalis
KIN4/I]
Length = 316
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 116/235 (49%), Gaps = 18/235 (7%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
T++VF+ G+ +C+ CG ++ VD+ EWR F E + R G PL+P L GL
Sbjct: 17 TDIVFNEETGEYVCARCGTIVLDRYVDQGPEWRAFTPEERERRG-RTGAPLSPTLHDHGL 75
Query: 73 STVIAKPTAGGSTELLSGS-------LGKLQARS---SHPDRNLIQAFKSISAMSDRLGL 122
STVI + LS L K Q R+ + DRNL A + M++ L L
Sbjct: 76 STVIDHRDRDALGKRLSPRKRQEVQRLRKWQLRARIQTGMDRNLTIAMNELDRMANLLNL 135
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
IK+ A IY+K ++ +RGR+ E++VAA +Y ACR ++PRT+ E +K
Sbjct: 136 PKQIKEEAAVIYRKAVEKGLVRGRSIESVVAAVIYAACRIHHQPRTLDEIAKKLE-VNRK 194
Query: 183 EIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQK 237
E+ R I K L+ +++ A D++ R L + ++ A + ++K
Sbjct: 195 EVARCYRLITKELK------LKVPIADAMDHIPRIGEALKLRGDIIEYAMKIMEK 243
>gi|433639269|ref|YP_007285029.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|448377441|ref|ZP_21560137.1| Transcription factor TFIIB cyclin-related protein [Halovivax
asiaticus JCM 14624]
gi|433291073|gb|AGB16896.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|445655385|gb|ELZ08230.1| Transcription factor TFIIB cyclin-related protein [Halovivax
asiaticus JCM 14624]
Length = 326
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 124/248 (50%), Gaps = 26/248 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++V D G+T+C++CGLV+ SVD EWR F + S ++ RVG P
Sbjct: 31 CPECS--GQLVADDEHGETVCADCGLVVAEDSVDRGPEWRAF-DASEKNEKSRVGAPTTN 87
Query: 66 LLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 88 TMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQALGE 144
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ +GL T +++ A+ IY++ ++ L GR+ E + AC+Y A RQ PR++ E
Sbjct: 145 IDRMASAVGLPTNVRETASVIYRRALEEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 204
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ K EI R ++V+ L +E+ Y+ RF S L +++++ A+
Sbjct: 205 ADVSR-VEKNEIARTYRYVVREL------GLEVQPADPESYVPRFASGLDLSDESEHRAR 257
Query: 233 EAVQKSED 240
++ +++
Sbjct: 258 SLLKNAKE 265
>gi|448733008|ref|ZP_21715254.1| transcription initiation factor TFB [Halococcus salifodinae DSM
8989]
gi|445803341|gb|EMA53638.1| transcription initiation factor TFB [Halococcus salifodinae DSM
8989]
Length = 325
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 115/241 (47%), Gaps = 19/241 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V G+ +C +CGLV+E ++D EWR F N + RVG P
Sbjct: 31 CPECD-SENLVKSADRGELVCDDCGLVVEEENIDPGPEWRAF-NHAERQQKSRVGAPTTQ 88
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 89 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 148
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 149 MASALGVPRSVREVASVIYRRALSDDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 208
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +EM + Y+ RFCS L ++ + A + +
Sbjct: 209 SR-VNRKEIGRTYRYISQEL------GLEMRPVDPKKYVPRFCSELTLSEEVQSKANDII 261
Query: 236 Q 236
+
Sbjct: 262 E 262
>gi|124486326|ref|YP_001030942.1| transcription initiation factor IIB [Methanocorpusculum labreanum
Z]
gi|124363867|gb|ABN07675.1| Transcription initiation factor IIB (TFIIB) [Methanocorpusculum
labreanum Z]
Length = 340
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 80/254 (31%), Positives = 124/254 (48%), Gaps = 27/254 (10%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRV 59
+ C +C ++V D+ + +C CGLVL+ +D EWR F DHD RV
Sbjct: 42 TVCPECGS-KQLVHDYERAELVCQHCGLVLDDDFIDRGPEWRAF-----DHDQRMKRSRV 95
Query: 60 GGPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQA 109
G P+ + GLST+I +S L K Q R S+ +RNL A
Sbjct: 96 GAPMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFA 155
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
+ M+ LGL +++ A +Y+ D+ +RGR+ E + AA LY ACRQ N PRT+
Sbjct: 156 LSELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCNVPRTL 215
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVK 229
E V+ ++KEIGR FI + L +++ DY+ RFCS LG+ +
Sbjct: 216 DEIAEVSR-VSRKEIGRTYRFISREL------GLKLLPTSPGDYVPRFCSGLGLKGEVQS 268
Query: 230 AAQEAVQKSEDLDI 243
A E ++++ + ++
Sbjct: 269 RAMEILKQAGEREL 282
>gi|448728119|ref|ZP_21710451.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
gi|445797553|gb|EMA48024.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
Length = 325
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 115/241 (47%), Gaps = 19/241 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V G+ +C +CGLV+E ++D EWR F N + RVG P
Sbjct: 31 CPECD-SENLVKSADRGELVCDDCGLVVEEENIDPGPEWRAF-NHAERQQKSRVGAPTTQ 88
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 89 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 148
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 149 MASALGVPRSVREVASVIYRRALSDDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 208
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +EM + Y+ RFCS L ++ + A + +
Sbjct: 209 SR-VNRKEIGRTYRYISQEL------GLEMRPVDPKKYVPRFCSELTLSEEVQSKANDII 261
Query: 236 Q 236
+
Sbjct: 262 E 262
>gi|16081990|ref|NP_394404.1| transcription initiation factor IIB [Thermoplasma acidophilum DSM
1728]
gi|14195242|sp|Q9HJM2.1|TF2B2_THEAC RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|10640260|emb|CAC12074.1| transcription initiation factor IIB related protein [Thermoplasma
acidophilum]
Length = 307
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 126/248 (50%), Gaps = 19/248 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D+ G+ IC++CG V+E +D+ EWR F + D R G P+
Sbjct: 11 CPECNS-EHLIRDYEHGELICADCGAVIEDAYIDQGPEWRAF-DSDQDERRARTGSPMTY 68
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFKSISA 115
L GL+T I+ + + + K R S+ +RNL A + ++
Sbjct: 69 LSHDKGLATEISWSNKDYYGKRIPHKNRAQIYRVRKWHQRIRVSNAAERNLSLALQLLND 128
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
+ +LG+ IK+ A IY+K ++ +RGR+ E+IV A +Y ACR+ N PRT+ E S
Sbjct: 129 IGAKLGIPKDIKETAALIYRKAVEKNLIRGRSIESIVCASIYAACRKVNIPRTLDEI-SK 187
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
A+ KK+IG+A + K L+ + + Y+ +FC+ L + QA+ +++ V
Sbjct: 188 ASEVNKKKIGKAYRHLAKELDLNLKPTTPFS------YISQFCNKLDLDKQAIVISEDIV 241
Query: 236 QKSEDLDI 243
+++ + I
Sbjct: 242 RQAMSMGI 249
>gi|344212001|ref|YP_004796321.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|343783356|gb|AEM57333.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
Length = 322
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 116/244 (47%), Gaps = 26/244 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C VV D G+T+C +CGLV+E +D EWR F + D RVG P
Sbjct: 29 CPECS--GNVVTDSEHGETVCEDCGLVVEEDEIDHGPEWRAFNSAEKDRK-SRVGAPTTN 85
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 86 MMHDKGLSTNIGWQNKDAYGRS--LSSEQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 142
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ ++ IY++ L GR+ E + + LY A R PR++ E
Sbjct: 143 IDRMASALGLPQNVRETSSVIYRRALGDDLLPGRSIEGVATSALYAAARMAGNPRSLDEM 202
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ K E+ R +IV+ L S+E+ YL RF S+LG++ + + A+
Sbjct: 203 ARVSR-VEKMELTRTYRYIVREL------SLEVQPADPEHYLPRFISDLGLSEETQRQAR 255
Query: 233 EAVQ 236
+ ++
Sbjct: 256 DLIE 259
>gi|313127155|ref|YP_004037425.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448288376|ref|ZP_21479575.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293520|gb|ADQ67980.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445569527|gb|ELY24099.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 321
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 120/251 (47%), Gaps = 26/251 (10%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D C +C VV D G+T+C++CGLV+ SVD EWR F D RVG P
Sbjct: 23 DLTCPECG--GNVVVDDEHGETVCADCGLVVTEDSVDRGPEWRAFDAAEKDQ-KSRVGAP 79
Query: 63 LNPLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQA 109
+ GLST I + G S L S K+Q R S +RNL QA
Sbjct: 80 TTNTMHDKGLSTNIDWRDRDAYGNS--LSSNQRQKMQRLRKWNERFRTRDSK-ERNLKQA 136
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
I M+ LGL +++ A+ IY++ D L GR+ E + +C+Y A R PR++
Sbjct: 137 LGEIDRMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCVYAAARMAGVPRSL 196
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVK 229
E V+ K E+ R +I + L S+E+ Y+ RF S LG+++++
Sbjct: 197 DEISEVSR-VEKSEVARTYRYIAREL------SLEVKPADPEQYVPRFGSELGLSDESKM 249
Query: 230 AAQEAVQKSED 240
A++ ++ +++
Sbjct: 250 RARQLLKNAKE 260
>gi|242398518|ref|YP_002993942.1| Transcription initiation factor IIB [Thermococcus sibiricus MM 739]
gi|242264911|gb|ACS89593.1| Transcription initiation factor IIB [Thermococcus sibiricus MM 739]
Length = 299
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 114/227 (50%), Gaps = 12/227 (5%)
Query: 16 VFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTV 75
V+D G+ IC+ CG V++ +D EWR F + S R G P + LL GLST
Sbjct: 16 VYDPERGEIICANCGFVIQENIIDMGPEWRAF-DASQREKRSRTGAPESILLHDKGLSTD 74
Query: 76 IA--KPTAGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRA 130
I + G E + L K Q+R S +RNL A + + RL L +++ A
Sbjct: 75 IGYDRNVKGLMREKIY-RLRKWQSRLRVSDAAERNLAFALSELDRLGARLNLPKHVEEEA 133
Query: 131 NEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEF 190
+Y+ + +RGR+ E+++AAC+Y ACR PRT+ E +A KKEIGR+ F
Sbjct: 134 ARLYRDAVKKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIADMAK-VDKKEIGRSFRF 192
Query: 191 IVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQK 237
I ++L + + +DY+ +F LG++ + + A E + +
Sbjct: 193 IARNLNLTPKKLF----VKPTDYVNKFADELGLSERTRRRAIELLDQ 235
Score = 40.4 bits (93), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LGL + RA E+ +V + G++ +VAA LYIA
Sbjct: 201 PKKLFVKPTDYVNKFADELGLSERTRRRAIELLDQVYNMGLTSGKSPAGLVAAALYIAGL 260
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E + RT +E A T R KE + K
Sbjct: 261 LEGEKRTQREVAEAARVTEVTVRNRYKEMVEK 292
>gi|336477091|ref|YP_004616232.1| transcription factor TFIIB cyclin [Methanosalsum zhilinae DSM 4017]
gi|335930472|gb|AEH61013.1| Transcription factor TFIIB cyclin-related protein [Methanosalsum
zhilinae DSM 4017]
Length = 337
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 124/240 (51%), Gaps = 26/240 (10%)
Query: 18 DHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRVGGPLNPLLSGGGLS 73
D+ + +C++CGLV++A VDE EWR F DHD RVG P+ + GLS
Sbjct: 52 DYERAELVCADCGLVVDAEFVDEGPEWRAF-----DHDQRMKRSRVGAPMTYTIHDKGLS 106
Query: 74 TVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLV 123
T+I + +S L K Q R S+ +RNL A + M+ LGL
Sbjct: 107 TMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRMASALGLP 166
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
T+++ A +Y+K D+ +RGR+ E + AA LY ACRQ + PRT+ E V+ ++KE
Sbjct: 167 RTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIGEVSR-VSRKE 225
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
IGR FI + L S+++ DY+ RFCS L + + + E ++++ + ++
Sbjct: 226 IGRTYRFISREL------SLKLMPTSPIDYVPRFCSGLQLKGEVQSKSVEILRQASEKEL 279
>gi|292654958|ref|YP_003534855.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448292824|ref|ZP_21483145.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448543167|ref|ZP_21624807.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448550042|ref|ZP_21628647.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448559604|ref|ZP_21633678.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|448572225|ref|ZP_21640218.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|448596951|ref|ZP_21654089.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|291371057|gb|ADE03284.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445571799|gb|ELY26342.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445706914|gb|ELZ58784.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445710994|gb|ELZ62789.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445713090|gb|ELZ64871.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445720817|gb|ELZ72488.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445740832|gb|ELZ92337.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 335
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 119/246 (48%), Gaps = 22/246 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C VV D G+T+C++CGLV+ A SVD EWR F D + RVG P
Sbjct: 40 CPECG--GHVVTDDEHGETVCNDCGLVVTADSVDRGPEWRAFDAREKD-EKSRVGAPTTN 96
Query: 66 LLSGGGLSTVIA---KPTAGGS--------TELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
+ GLST I + G S + L + + R S +RNL QA I
Sbjct: 97 TMHDKGLSTNIDWRDRDAYGNSLGARQRQKMQRLRKWNERFRTRDSK-ERNLKQALGEID 155
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ D L GR+ E + +C Y A R PR++ E
Sbjct: 156 RMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSLDEIAE 215
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ K E+ R +I + L S+E+ Y+ RF S LG+++++ A++
Sbjct: 216 VSR-VEKSEVARTYRYIAREL------SLEVKPADPEQYVPRFASELGLSDESKMRARQL 268
Query: 235 VQKSED 240
++ +++
Sbjct: 269 LKNAKE 274
>gi|448424065|ref|ZP_21582191.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|448448397|ref|ZP_21591210.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|448478955|ref|ZP_21603961.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
gi|448491995|ref|ZP_21608663.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|448512210|ref|ZP_21616324.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|448520833|ref|ZP_21618166.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445682730|gb|ELZ35143.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445692213|gb|ELZ44394.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445694530|gb|ELZ46655.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445702969|gb|ELZ54908.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445814813|gb|EMA64771.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445822785|gb|EMA72547.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
Length = 317
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 115/240 (47%), Gaps = 20/240 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +E + + + +C +CGLVL+ ++D EWR F N + RVG P+
Sbjct: 25 CPECD--SENIVTDADQELVCEDCGLVLDERNIDRGPEWRAF-NHNERQSKSRVGAPITE 81
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A I
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ ++ +RGR+ E + A LY ACRQE PR++ E V
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEVADV 201
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +E+ + ++ RF S+L ++ + A E +
Sbjct: 202 SR-VPQKEIGRTYRYISQEL------GLELKPVDPKQFVPRFASSLQLSEEVQSKATEII 254
>gi|448585353|ref|ZP_21647746.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445726053|gb|ELZ77670.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
Length = 332
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 119/249 (47%), Gaps = 22/249 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+TIC +CGLV+E VD EWR F + D RVG P
Sbjct: 37 CPECS--GHLVTDEEHGETICEDCGLVVEDTVVDRGPEWRAFDSAERDS-KSRVGAPTTK 93
Query: 66 LLSGGGLSTVIA-----------KPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
++ GLST I P + L + + R S +RNL QA I
Sbjct: 94 MMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSK-ERNLKQALGEID 152
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ + L GR+ E + A LY + R PR++ E
Sbjct: 153 RMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATAALYASARMAGTPRSLDELEK 212
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ K E+ R ++V+ L+ +E+ Y+ RF S LG++++A + A++
Sbjct: 213 VSR-VDKMELTRTYRYVVRELK------LEIKPADPEQYVPRFASELGLSDEAERQARKL 265
Query: 235 VQKSEDLDI 243
++ +++ I
Sbjct: 266 LRDAKETGI 274
>gi|448737144|ref|ZP_21719196.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
gi|445804357|gb|EMA54614.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
Length = 305
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 113/229 (49%), Gaps = 18/229 (7%)
Query: 22 GDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA---K 78
G+ +C +CGLV+E ++D EWR F N + RVG P + GL+T I K
Sbjct: 26 GELVCEDCGLVVEEENIDPGPEWRAF-NHAERQQKSRVGAPTTQTMHDKGLTTTIDWKDK 84
Query: 79 PTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRAN 131
G S S L K Q R D RNL A I M+ LG+ ++++ A+
Sbjct: 85 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 144
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
IY++ +RGR+ E + + LY ACR+E PR+++E V+ +KEIGR ++
Sbjct: 145 VIYRRSLADDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEVSR-VERKEIGRTYRYV 203
Query: 192 VKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
+ L ++EM + Y+ RFCS L ++ + A + ++ + D
Sbjct: 204 SQEL------ALEMRPVDPKKYVPRFCSELTLSEEVQAKANDIIETTAD 246
>gi|91772962|ref|YP_565654.1| transcription initiation factor IIB [Methanococcoides burtonii DSM
6242]
gi|91711977|gb|ABE51904.1| Transcription initiation factor IIB [Methanococcoides burtonii DSM
6242]
Length = 337
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 123/240 (51%), Gaps = 26/240 (10%)
Query: 18 DHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRVGGPLNPLLSGGGLS 73
D+ + +C++CGLV++A VDE EWR F DHD RVG P+ + GLS
Sbjct: 52 DYERAELVCADCGLVVDAEFVDEGPEWRAF-----DHDQRMKRSRVGAPMTYTIHDKGLS 106
Query: 74 TVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLV 123
T+I + +S L K Q R S+ +RNL A + M+ LGL
Sbjct: 107 TMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRMASALGLP 166
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
T+++ A +Y+K D+ +RGR+ E + AA LY ACRQ + PRT+ E V+ ++KE
Sbjct: 167 RTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIGEVSR-VSRKE 225
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
IGR FI + L S+++ DY+ RFCS L + + E ++++ + ++
Sbjct: 226 IGRTYRFISREL------SLKLMPTSPIDYVPRFCSGLNLKGEVQSRGVEILRQASEKEL 279
>gi|448605946|ref|ZP_21658539.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445741269|gb|ELZ92773.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
Length = 335
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 119/246 (48%), Gaps = 22/246 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C VV D G+T+C++CGLV+ A SVD EWR F D + RVG P
Sbjct: 40 CPECG--GHVVTDDEHGETVCNDCGLVVTADSVDRGPEWRAFDAREKD-EKSRVGAPTTN 96
Query: 66 LLSGGGLSTVIA---KPTAGGS--------TELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
+ GLST I + G S + L + + R S +RNL QA I
Sbjct: 97 TMHDKGLSTNIDWRDRDAYGNSLGARQRQKMQRLRKWNERFRTRDSK-ERNLKQALGEID 155
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ D L GR+ E + +C Y A R PR++ E
Sbjct: 156 RMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSLDEIAE 215
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ K E+ R +I + L S+E+ Y+ RF S LG+++++ A++
Sbjct: 216 VSR-VEKSEVARTYRYIAREL------SLEVKPADPEQYVPRFASELGLSDESKMRARQL 268
Query: 235 VQKSED 240
++ +++
Sbjct: 269 LKNAKE 274
>gi|448561229|ref|ZP_21634581.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|448582139|ref|ZP_21645643.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|448625327|ref|ZP_21671094.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445721461|gb|ELZ73129.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445731787|gb|ELZ83370.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445749089|gb|EMA00535.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 335
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 119/246 (48%), Gaps = 22/246 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C VV D G+T+C++CGLV+ A SVD EWR F D + RVG P
Sbjct: 40 CPECG--GHVVTDDEHGETVCNDCGLVVTADSVDRGPEWRAFDAREKD-EKSRVGAPTTN 96
Query: 66 LLSGGGLSTVIA---KPTAGGS--------TELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
+ GLST I + G S + L + + R S +RNL QA I
Sbjct: 97 TMHDKGLSTNIDWRDRDAYGNSLGARQRQKMQRLRKWNERFRTRDSK-ERNLKQALGEID 155
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ D L GR+ E + +C Y A R PR++ E
Sbjct: 156 RMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSLDEIAE 215
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ K E+ R +I + L S+E+ Y+ RF S LG+++++ A++
Sbjct: 216 VSR-VEKSEVARTYRYIAREL------SLEVKPADPEQYVPRFASELGLSDESKMRARQL 268
Query: 235 VQKSED 240
++ +++
Sbjct: 269 LKNAKE 274
>gi|448329711|ref|ZP_21519008.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445613635|gb|ELY67331.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 326
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 121/245 (49%), Gaps = 26/245 (10%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
+C +C ++ D +T+CS+CGLV+E +D EWR F + D + RVG P
Sbjct: 30 HCPECG--GRLISDDEHAETVCSDCGLVVEEDEIDRGPEWRAFDSAEKD-EKSRVGAPTT 86
Query: 65 PLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFK 111
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 87 NMMHDQGLSTNIGWQDKDAYGRS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALG 143
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
I M+ LGL +++ A+ IY++ ++ L GR+ E + A LY A RQ PR++ E
Sbjct: 144 EIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDE 203
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
+V+ K E+ R +I++ L +E+ Y+ RF S+L ++++ + A
Sbjct: 204 ISAVSR-VEKMELTRTYRYIIREL------GLEVKPADPEHYVPRFVSDLDLSDETERMA 256
Query: 232 QEAVQ 236
+E ++
Sbjct: 257 RELLE 261
>gi|448528883|ref|ZP_21620263.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445710331|gb|ELZ62150.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 317
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 115/240 (47%), Gaps = 20/240 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +E + + + +C +CGLVL+ ++D EWR F N + RVG P+
Sbjct: 25 CPECD--SENIVTDADQELVCEDCGLVLDERNIDRGPEWRAF-NHNERQSKSRVGAPITE 81
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A I
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ ++ +RGR+ E + A LY ACRQE PR++ E V
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEVADV 201
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +E+ + ++ RF S+L ++ + A E +
Sbjct: 202 SR-VPQKEIGRTYRYISQEL------GLELRPVDPKQFVPRFASSLQLSEEVQSKATEII 254
>gi|296109616|ref|YP_003616565.1| transcription factor TFIIB cyclin-related protein
[methanocaldococcus infernus ME]
gi|295434430|gb|ADG13601.1| Transcription factor TFIIB cyclin-related protein
[Methanocaldococcus infernus ME]
Length = 320
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 120/237 (50%), Gaps = 20/237 (8%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
E+V D S + +C++CG V++ D EWR F +E RVG P+ + GLS
Sbjct: 33 EIVSDSS--EIVCAKCGCVIKEQIFDAGPEWRAFDHEQKVKR-CRVGAPMTYTIHDKGLS 89
Query: 74 TVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLV 123
TVI + +S + L K Q R S +RNL A + ++ +LGL
Sbjct: 90 TVIDWRNKDAYGKDISANKRAELYRLRKWQRRIRVSDASERNLAFALSELDRIASKLGLP 149
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+K+ A+ +Y++ + +RGR+ E +VAA +Y ACR+ PRT+ E V+ KKE
Sbjct: 150 KHVKEHASLLYREAVRKGLIRGRSIEGVVAATIYAACRKYRVPRTLDEIAEVSR-VDKKE 208
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
IGR F+ + L+ +++ + DY+ RF S LG+ + A + ++K+ +
Sbjct: 209 IGRTYRFLARELK------IKLAPTNPIDYVPRFASELGLPGEVESKAIQILKKAAE 259
>gi|448540715|ref|ZP_21623636.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448549017|ref|ZP_21627793.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448555808|ref|ZP_21631737.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445708868|gb|ELZ60703.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445713706|gb|ELZ65481.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445717331|gb|ELZ69049.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
Length = 332
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 119/249 (47%), Gaps = 22/249 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+TIC +CGLV+E VD EWR F + D RVG P
Sbjct: 37 CPECS--GHLVTDEEHGETICEDCGLVVEDTVVDRGPEWRAFDSAERDSKS-RVGAPTTK 93
Query: 66 LLSGGGLSTVIA-----------KPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
++ GLST I P + L + + R S +RNL QA I
Sbjct: 94 MMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSK-ERNLKQALGEID 152
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ + L GR+ E + + LY + R PR++ E
Sbjct: 153 RMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATSALYASARMAGTPRSLDELEK 212
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ K E+ R +IV+ L+ +E+ Y+ RF S LG++++A + A++
Sbjct: 213 VSR-VDKMELTRTYRYIVRELK------LEIKPADPEQYVPRFASELGLSDEAERQARQL 265
Query: 235 VQKSEDLDI 243
++ +++ I
Sbjct: 266 LRDAKETGI 274
>gi|409730105|ref|ZP_11271696.1| transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
gi|448722749|ref|ZP_21705280.1| transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
gi|445788886|gb|EMA39587.1| transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
Length = 327
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 124/251 (49%), Gaps = 26/251 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + D G+T+C +CGLV+E +D EWR F + D RVG P
Sbjct: 32 CPECG--GRLAADTEHGETVCMDCGLVVETDEIDRGPEWRAFDSAERDQKS-RVGAPTTN 88
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G + L S K+Q R S +RNL QA
Sbjct: 89 MMHDKGLSTNIGWQNKDAYGNA--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 145
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL ++++ A+ IY++ D+ L GR+ E + + LY A RQ PR++ E
Sbjct: 146 IDRMASALGLPDSVRETASVIYRRALDEDLLPGRSIEGVSTSALYAAARQAGTPRSLDEI 205
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
+V+ K E+ R ++V+ L +E+ + Y+ RF S+L ++ ++ + A+
Sbjct: 206 ATVSR-VGKMELTRTYRYVVREL------GLEIQPADPASYVPRFASDLDLSEESERRAR 258
Query: 233 EAVQKSEDLDI 243
+ ++ ++D I
Sbjct: 259 QLLETAKDEGI 269
>gi|256810972|ref|YP_003128341.1| transcription initiation factor IIB [Methanocaldococcus fervens
AG86]
gi|256794172|gb|ACV24841.1| Transcription factor TFIIB cyclin-related [Methanocaldococcus
fervens AG86]
Length = 331
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 120/238 (50%), Gaps = 22/238 (9%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
EVV D+ + +C++CG V++ D EWR F +E RVG P+ + GLS
Sbjct: 42 EVVKDYERAEIVCAKCGCVIKENLFDIGPEWRAFDHEQKIKR-CRVGAPMTYTIHDKGLS 100
Query: 74 TVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLV 123
TVI + LS + L K Q R S +RNL A + ++ +LGL
Sbjct: 101 TVIDWRNKDSYGKDLSANKRAQLYRLRKWQRRIRVSDAAERNLAFALSELDRITSKLGLP 160
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+++ A IY+ ++ +RGR+ E +VAA +Y ACR+ PRT+ E A+ +KE
Sbjct: 161 RHVRENAAIIYRGAVEKGLIRGRSIEGVVAAAIYAACRRCRVPRTLDEIAE-ASRVDRKE 219
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMT----NQAVKAAQEAVQK 237
IGR F+ + L +++ + DY+ RF S LG+ ++A++ Q+A +K
Sbjct: 220 IGRTYRFLAREL------GIKLTPTNPIDYVPRFASELGLPGEVESKAIQILQQAAEK 271
>gi|48478412|ref|YP_024118.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
gi|48431060|gb|AAT43925.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
Length = 304
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 128/248 (51%), Gaps = 19/248 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D+ G+ +C +CG+V+E S+D+ EWR F + D R G P++
Sbjct: 9 CPECGS-GHLIRDYERGEVLCGDCGIVIEETSIDQGPEWRAF-DSDQDEKRARTGSPMSF 66
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFKSISA 115
L GL+T I+ + + + K R S+ +RNL A + ++
Sbjct: 67 LSHDKGLATEISWSNRDYYGKRIPHKNRAQIYRVRKWHQRIRVSNASERNLSLALQLLND 126
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
+LG+ IK+ A IY+K ++ +RGR+ E+IV A +Y ACRQ N PRT+ E
Sbjct: 127 DGSKLGIPKDIKESAALIYRKAVERNLIRGRSIESIVCAAIYAACRQVNIPRTLDEISKA 186
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
A+ KK+IG+A +HL E+ +++ T ++ Y+ +FC+ L + + ++E +
Sbjct: 187 AD-INKKKIGKA----YRHLAKELKLNLKPTTPYS--YVSQFCNKLNLDKDVIIKSEEII 239
Query: 236 QKSEDLDI 243
++ + I
Sbjct: 240 RRVNETGI 247
>gi|448352384|ref|ZP_21541172.1| Transcription factor TFIIB cyclin-related protein [Natrialba
hulunbeirensis JCM 10989]
gi|445643145|gb|ELY96198.1| Transcription factor TFIIB cyclin-related protein [Natrialba
hulunbeirensis JCM 10989]
Length = 321
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 110/240 (45%), Gaps = 19/240 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T + + C +CGL+LE S+D EWR F N + RVG P
Sbjct: 27 CPECDS-TALARSADESEISCEDCGLILEEESIDRGPEWRAF-NAAERDSKSRVGAPTTQ 84
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A
Sbjct: 85 TMHDKGLTTTIDWKNQDAYGRSLSSEKRSQMNRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ +Y++ D+ +RGR+ E + + LY ACR E PR++ E +V
Sbjct: 145 MASALGVPRSVREVASVLYRRTLDEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEIAAV 204
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ + EIGR +I K L S+EM + Y+ RFCS L + ++ A E +
Sbjct: 205 SR-VDRMEIGRTYRYISKEL------SLEMQPVDPKKYVPRFCSELELPDEVQSKANEII 257
>gi|292655824|ref|YP_003535721.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448289811|ref|ZP_21480974.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448570851|ref|ZP_21639362.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|448595749|ref|ZP_21653196.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|14195256|sp|Q9YGA5.1|TFB2_HALVD RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|5410473|gb|AAD43074.1|AF143693_1 transcription factor B [Haloferax volcanii]
gi|291372841|gb|ADE05068.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445581328|gb|ELY35689.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445722769|gb|ELZ74420.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445742203|gb|ELZ93698.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 332
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 119/249 (47%), Gaps = 22/249 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+TIC +CGLV+E VD EWR F + D RVG P
Sbjct: 37 CPECS--GHLVTDEEHGETICEDCGLVVEDTVVDRGPEWRAFDSAERDS-KSRVGAPTTK 93
Query: 66 LLSGGGLSTVIA-----------KPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
++ GLST I P + L + + R S +RNL QA I
Sbjct: 94 MMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSK-ERNLKQALGEID 152
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ + L GR+ E + + LY + R PR++ E
Sbjct: 153 RMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATSALYASARMAGTPRSLDELEK 212
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ K E+ R +IV+ L+ +E+ Y+ RF S LG++++A + A++
Sbjct: 213 VSR-VDKMELTRTYRYIVRELK------LEIKPADPEQYVPRFASELGLSDEAERQARQL 265
Query: 235 VQKSEDLDI 243
++ +++ I
Sbjct: 266 LRDAKETGI 274
>gi|448503020|ref|ZP_21612884.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445693422|gb|ELZ45574.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 335
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 114/239 (47%), Gaps = 22/239 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + D G+T+C +CGLV+E SVD EWR F N RVG P
Sbjct: 41 CPECD--GRLATDTEHGETVCEDCGLVVEEDSVDRGPEWRAF-NSGERDSKSRVGAPTTN 97
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLG-----------KLQARSSHPDRNLIQAFKSIS 114
++ GLST I + LSG + + R S +RNL QA I
Sbjct: 98 MMHDKGLSTNIGWQDKDAYGKSLSGRQRRRMQRLRTWNERFRTRDSK-ERNLKQALGEID 156
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ + L GR+ E + A LY A RQ PR++ EF +
Sbjct: 157 RMASALGLPDNVRETASVIYRRALSENLLPGRSIEGVATASLYAAARQVGNPRSLDEFTA 216
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
V+ K E+ R ++++ E+G V+ + Y+ RF S L ++ + + A+E
Sbjct: 217 VSR-VEKMELTRTYRYVIR----ELGLRVQ--PADPTSYVPRFASRLDLSEETERRARE 268
>gi|407462999|ref|YP_006774316.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046621|gb|AFS81374.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 289
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 119/236 (50%), Gaps = 22/236 (9%)
Query: 18 DHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA 77
D+ G+ C +CG V+ S + EWR F +S +P R G P + L+ GLSTVI
Sbjct: 4 DNVTGEQFCGKCGYVVSEKSNESGPEWRAFQTDSG-ANPARTGAPSSLLIHDMGLSTVIN 62
Query: 78 KPTAGGSTELLSGSLGKL---------QARSSHP-DRNLIQAFKSISAMSDRLGLVTTIK 127
+ + LS S+ ++++ P DRNL QA ++ + D++ L T +
Sbjct: 63 PINKDATGKPLSTSMKSTIERLRTWDSRSQAHEPQDRNLRQALGELTRIKDKIALSTNVL 122
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
++A +Y+K ++K +RGR+ A++AA +Y ACR PRT+K+ AN +K+I R
Sbjct: 123 EKAAYLYRKALEKKLVRGRSISAMIAASIYAACRDTETPRTLKDVADAAN-VKRKDIARC 181
Query: 188 KEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQ----AVKAAQEAVQKSE 239
+ LE ++M +++ + R S L ++ + A+K QEA E
Sbjct: 182 YRLLHHELE------LKMPVVNSIQCISRISSKLELSEKIKRHAIKVLQEAQNNKE 231
>gi|300711217|ref|YP_003737031.1| transcription factor TFIIB cyclin-like protein [Halalkalicoccus
jeotgali B3]
gi|299124900|gb|ADJ15239.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
Length = 335
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 118/239 (49%), Gaps = 22/239 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C E +H G+T+CS CGLV+E +D EWR F + D RVG P
Sbjct: 31 CPECGGRLETDTEH--GETVCSACGLVVEENEIDRGPEWRAFDSAERDQKS-RVGAPTTT 87
Query: 66 LLSGGGLSTVIA--KPTAGGST---------ELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
++ GLST I A G+T + L + + R+S +RNL QA I
Sbjct: 88 MMHDKGLSTNIGWQNKDAYGNTLSNRQRQKMQRLRTWNERFRTRNSK-ERNLKQALGEID 146
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ ++ L GR+ E + A LY A RQ PR++ E
Sbjct: 147 RMASALGLPKNVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEIVQ 206
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
V+ + E+ R ++++ L+ +E+ Y+ RF S+L ++++A A+E
Sbjct: 207 VSR-IDRMELTRTYRYVIRELD------LEVQPADPESYVPRFASDLELSDEAEHRARE 258
>gi|448428447|ref|ZP_21584259.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|448450283|ref|ZP_21592182.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|448481624|ref|ZP_21604975.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
gi|448507517|ref|ZP_21615028.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|448523267|ref|ZP_21618620.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|448530980|ref|ZP_21620814.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|155212686|gb|ABT17407.1| transcription initiation factor TFB [Halorubrum sp. TP009]
gi|445676412|gb|ELZ28934.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445698472|gb|ELZ50516.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445701666|gb|ELZ53642.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445707420|gb|ELZ59274.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445812135|gb|EMA62131.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445821877|gb|EMA71661.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
Length = 324
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 114/233 (48%), Gaps = 22/233 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C V+ D G+T+CS+CGLV+EA SVD EWR F + D + RVG P
Sbjct: 30 CPECG--GHVINDEEHGETVCSDCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTN 86
Query: 66 LLSGGGLSTVIA---KPTAGGS--------TELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
+ GLST I K G S + L + + R S +RNL QA I
Sbjct: 87 TMHDKGLSTNIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSK-ERNLKQALGEID 145
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ GL +++ A+ IY++ D+ L GR+ E + +C+Y A R PR++ E
Sbjct: 146 RMASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIAD 205
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQA 227
V+ K EI R ++V+ L+ +E+ Y+ RF S+L ++ ++
Sbjct: 206 VSR-VEKAEIARTYRYVVRELK------LEVKPADPEQYVPRFASDLELSEES 251
>gi|313124866|ref|YP_004035130.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448287275|ref|ZP_21478488.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312291231|gb|ADQ65691.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445572483|gb|ELY27021.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 296
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 106/211 (50%), Gaps = 14/211 (6%)
Query: 19 HSAG-DTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA 77
H+ G +T+C +CGLV+ Y++D EWR FA++ D +P R G PL GLST I
Sbjct: 24 HAEGQETVCGDCGLVVSEYTIDHGPEWRSFADD--DRNPKRTGAPLTQSRHDRGLSTEIG 81
Query: 78 KPT-AGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEI 133
+ T G + K R S+ +RN + AF I ++ L L I+D A +
Sbjct: 82 RSTRVKGRKRRRLARMRKQHNRARISTKRERNQVYAFTEIRRLTSALSLPERIRDHACSL 141
Query: 134 YKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
+K +++ LRGR+ E AAC+Y ACR N RTV E + A T ++
Sbjct: 142 FKSAQNEDLLRGRSLEGFAAACVYAACRVANVSRTVGEVVAEAKATEAEQSA-----AYD 196
Query: 194 HLEAEMGQSVEMGTIHASDYLRRFCSNLGMT 224
L ++G + +G + +Y+ RF S L ++
Sbjct: 197 ALNRDLG--LPVGPVDPVEYVPRFASRLDLS 225
>gi|448503531|ref|ZP_21613160.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445691732|gb|ELZ43915.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 324
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 114/233 (48%), Gaps = 22/233 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C V+ D G+T+CS+CGLV+EA SVD EWR F + D + RVG P
Sbjct: 30 CPECG--GHVINDEEHGETVCSDCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTN 86
Query: 66 LLSGGGLSTVIA---KPTAGGS--------TELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
+ GLST I K G S + L + + R S +RNL QA I
Sbjct: 87 TMHDKGLSTNIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSK-ERNLKQALGEID 145
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ GL +++ A+ IY++ D+ L GR+ E + +C+Y A R PR++ E
Sbjct: 146 RMASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIAD 205
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQA 227
V+ K EI R ++V+ L+ +E+ Y+ RF S+L ++ ++
Sbjct: 206 VSR-VEKAEIARTYRYVVRELK------LEVKPADPEQYVPRFASDLELSEES 251
>gi|448315422|ref|ZP_21505070.1| transcription initiation factor TFB [Natronococcus jeotgali DSM
18795]
gi|445611595|gb|ELY65342.1| transcription initiation factor TFB [Natronococcus jeotgali DSM
18795]
Length = 319
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 110/245 (44%), Gaps = 19/245 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C C E+V S G+ IC ECGLV+E VD EWR F N + RVG P
Sbjct: 26 CPGCDS-DEIVHRSSRGERICEECGLVIEEELVDSGPEWRAF-NHQERQEKSRVGAPTTT 83
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
L GL+T I +S L K Q R D RNL A I
Sbjct: 84 TLHDKGLTTEIDWKNKDAYGRAISSDKRSQMHRLRKWQKRIRTKDAGERNLQFALSEIDR 143
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ +++ A+ IY++ D+ +RGR+ E + A LY CR+E PR+++E V
Sbjct: 144 MASALGVPRDVREVASVIYRRALDEDLIRGRSIEGVATAALYAGCRREGIPRSLEEIADV 203
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ + EI R ++ L +E+ I Y+ RF S L + + A E +
Sbjct: 204 SR-VERLEISRTYRYVSNEL------GLELLPIDPKQYVPRFSSKLDLPQEVKVKANEII 256
Query: 236 QKSED 240
++ D
Sbjct: 257 DETAD 261
>gi|257051641|ref|YP_003129474.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256690404|gb|ACV10741.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 330
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 112/234 (47%), Gaps = 24/234 (10%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D G+T+C ECGLV+E +D EWR F D RVG P ++ GLST
Sbjct: 40 LVTDSERGETVCGECGLVVEEDEIDPGPEWRAFDAAEKDQKS-RVGAPTTNMMHDKGLST 98
Query: 75 VIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKSISAMSDRLG 121
I K G S L S K+Q R S +RNL QA I M+ LG
Sbjct: 99 NIGWQDKDAYGNS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGEIDRMASALG 155
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +++ A+ IY++ D+ L GR+ E + A LY A RQ PR++ E V+ +
Sbjct: 156 LPENVRETASVIYRRALDENLLPGRSIEGVATASLYAAARQAGNPRSLDEIERVSR-IGR 214
Query: 182 KEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
E+ R ++V+ L ++E+ Y+ RF S+L + + + A+E V
Sbjct: 215 MELTRTYRYVVREL------NLEVQPADPESYVPRFVSDLELNEEVSRRARELV 262
>gi|448349399|ref|ZP_21538241.1| transcription factor TFIIB cyclin-related protein [Natrialba
taiwanensis DSM 12281]
gi|445640642|gb|ELY93729.1| transcription factor TFIIB cyclin-related protein [Natrialba
taiwanensis DSM 12281]
Length = 318
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 116/247 (46%), Gaps = 19/247 (7%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
S C++C + VV G+ IC ECGLV+E VD EWR F N + RVG P
Sbjct: 24 STCSECGS-SNVVRHSDQGERICEECGLVIEEAMVDSGPEWRAF-NHKERQEKSRVGAPT 81
Query: 64 NPLLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSI 113
+ GL+T I K G S S L K Q+R D RNL A I
Sbjct: 82 TQTMHDKGLTTQIDWKDKDAYGRSISSKKRSQMNRLRKWQSRIRTRDAGERNLQFALSEI 141
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M+ LG+ ++++ + IY++ + +RGR+ E + A LY CRQE+ PR+++E
Sbjct: 142 DRMASALGVPRSVREVTSMIYRRALQEDLIRGRSIEGVATAALYAGCRQEDIPRSLEEIT 201
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
V+ + E+ R +I L +E+ I Y+ RF S L + + A E
Sbjct: 202 EVSR-IERIEVSRTYRYISNEL------GLELLPIDPKQYVPRFSSKLDLPQEVEAKANE 254
Query: 234 AVQKSED 240
++++ D
Sbjct: 255 IIEETAD 261
>gi|389846232|ref|YP_006348471.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448616151|ref|ZP_21664861.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388243538|gb|AFK18484.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445750806|gb|EMA02243.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 335
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 119/246 (48%), Gaps = 22/246 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C VV D G+T+C++CGLV+ A SVD EWR F D + RVG P
Sbjct: 40 CPECG--GHVVTDDEHGETVCNDCGLVVTADSVDRGPEWRAFDAREKD-EKSRVGAPTTN 96
Query: 66 LLSGGGLSTVIA---KPTAGGS--------TELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
+ GLST I + G S + L + + R S +RNL QA I
Sbjct: 97 TMHDKGLSTNIDWRDRDAYGNSLGARQRQKMQRLRKWNERFRTRDSK-ERNLKQALGEID 155
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ D L GR+ E + +C Y A R PR++ E
Sbjct: 156 RMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSLDEIAE 215
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ K E+ R +I + L S+E+ Y+ RF S LG+++++ A++
Sbjct: 216 VSR-VEKSEVARTYRYIAREL------SLEVKPADPEQYVPRFASELGLSDESKMRARKL 268
Query: 235 VQKSED 240
++ +++
Sbjct: 269 LKNAKE 274
>gi|257052965|ref|YP_003130798.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256691728|gb|ACV12065.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 334
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 107/224 (47%), Gaps = 20/224 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C V D G+ +C +CG+V+E+ ++D EWR F D + RVG P
Sbjct: 31 CPECG--GTVTTDDGRGERVCEQCGIVVESDAIDHGPEWRAFTPSEKD-ERSRVGSPTTK 87
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISA 115
LL GLST I S LS S + +R + DRNL QA I
Sbjct: 88 LLHDEGLSTSIGWADKDASGRTLSSSQREKMSRLRVWDERFRATDSRDRNLKQALGEIDR 147
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL +++ A+ IY++ D+ L GR+ E + A LY A RQ PR++ EF +
Sbjct: 148 MASALGLPENVRETASVIYRRALDEDLLPGRSIEGMATASLYAAARQAGTPRSLDEFEPI 207
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCS 219
+ +++ RA ++ + LE + + ++YL RF S
Sbjct: 208 SR-VRRQKYARAYRYLARQLE------LGIAPADPAEYLPRFTS 244
>gi|448737841|ref|ZP_21719874.1| transcription initiation factor IIB [Halococcus thailandensis JCM
13552]
gi|445802803|gb|EMA53104.1| transcription initiation factor IIB [Halococcus thailandensis JCM
13552]
Length = 271
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 111/231 (48%), Gaps = 14/231 (6%)
Query: 17 FDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVI 76
D + +T C +CGLV+ VD EWR F + D R G PL GLST I
Sbjct: 1 MDDAGEETYCLDCGLVIGEDRVDRGPEWRNFEDGP---DRKRTGAPLTRSRHDRGLSTEI 57
Query: 77 AKPTA-GGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
+ T G L L + R SS +RN + F + M LGL +I+DRA
Sbjct: 58 GRSTRLTGRKRRLFARLRRQHNRTRISSRAERNRVYGFTEVRRMVGALGLPDSIRDRACV 117
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
+++ +++ LRGR+ E AA +Y CR E RT+ E +VA T+ E+ A + +
Sbjct: 118 LFESAQNEDLLRGRSLEGFAAAAVYAVCRTEALSRTLAEIGTVAKA-TRDELTAAYDALN 176
Query: 193 KHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
+ L + G I +YL RF + L + N+ + A+ V+KS DL +
Sbjct: 177 REL------GLPTGPIDPEEYLARFANQLDLPNEIERRARALVEKSHDLGL 221
>gi|448371933|ref|ZP_21557052.1| transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
gi|445647024|gb|ELZ00005.1| transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
Length = 318
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 115/247 (46%), Gaps = 19/247 (7%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
S C++C + VV G+ IC ECGLV+E VD EWR F N + RVG P
Sbjct: 24 STCSECGS-SNVVRHSDQGERICEECGLVIEEAMVDSGPEWRAF-NHKERQEKSRVGAPT 81
Query: 64 NPLLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSI 113
+ GL+T I K G S S L K Q+R D RNL A I
Sbjct: 82 TQTMHDKGLTTQIDWKDKDAYGRSISSKKRSQMNRLRKWQSRIRTKDAGERNLQFALSEI 141
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M+ LG+ ++++ + IY++ + +RGR+ E + A LY CRQE PR+++E
Sbjct: 142 DRMASALGVPRSVREVTSMIYRRALQEDLIRGRSIEGVATAALYAGCRQEGIPRSLEEIT 201
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
V+ + E+ R +I L +E+ I Y+ RF S L + + A E
Sbjct: 202 EVSR-IERIEVSRTYRYISNEL------GLELLPIDPKQYVPRFSSKLNLPQEVEAKANE 254
Query: 234 AVQKSED 240
++++ D
Sbjct: 255 IIEETAD 261
>gi|448435246|ref|ZP_21586723.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|445684070|gb|ELZ36456.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
Length = 324
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 114/233 (48%), Gaps = 22/233 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C V+ D G+T+CS+CGLV+EA SVD EWR F + D + RVG P
Sbjct: 30 CPECG--GHVINDEEHGETVCSDCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTN 86
Query: 66 LLSGGGLSTVIA---KPTAGGS--------TELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
+ GLST I K G S + L + + R S +RNL QA I
Sbjct: 87 TMHDKGLSTNIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSK-ERNLKQALGEID 145
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ GL +++ A+ IY++ D+ L GR+ E + +C+Y A R PR++ E
Sbjct: 146 RMASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIAD 205
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQA 227
V+ K EI R ++V+ L+ +E+ Y+ RF S+L ++ ++
Sbjct: 206 VSR-VEKAEIARTYRYVVRELK------LEVKPADPEQYVPRFASDLELSEES 251
>gi|294495329|ref|YP_003541822.1| transcription initiation factor IIB (TFIIB) [Methanohalophilus
mahii DSM 5219]
gi|292666328|gb|ADE36177.1| Transcription initiation factor IIB (TFIIB) [Methanohalophilus
mahii DSM 5219]
Length = 337
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 123/240 (51%), Gaps = 26/240 (10%)
Query: 18 DHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRVGGPLNPLLSGGGLS 73
D+ + +C++CGLV++A VDE EWR F DHD RVG P+ + GLS
Sbjct: 52 DYERAELVCADCGLVVDADFVDEGPEWRAF-----DHDQRMKRSRVGAPMTYTIHDKGLS 106
Query: 74 TVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLV 123
T+I + +S L K Q R S+ +RNL A + M+ LGL
Sbjct: 107 TMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRMASALGLP 166
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
T+++ A +Y+K D+ +RGR+ E + AA LY ACRQ + PRT+ E V+ ++KE
Sbjct: 167 RTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIGEVSR-VSRKE 225
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
IGR FI + L S+++ DY+ RFCS L + + E ++++ + ++
Sbjct: 226 IGRTYRFISREL------SLKLMPTSPIDYVPRFCSGLTLKGEVQSRGVEILRQASEKEL 279
>gi|448316805|ref|ZP_21506385.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
gi|445606975|gb|ELY60873.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
Length = 321
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 110/240 (45%), Gaps = 19/240 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ T +V + C +CGLVLE +D EWR F N+S RVG P
Sbjct: 27 CPECES-TALVRSSDGSEVSCEDCGLVLEEEGIDRGPEWRAF-NQSERDSKSRVGAPTTQ 84
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A
Sbjct: 85 TMHDKGLTTTIDWKNKDAYGRSLSSEKRTQMSRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ +Y++ D+ +RGR+ E + + LY ACR E PR++ E +V
Sbjct: 145 MASALGVPRSVREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEVAAV 204
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ + EIGR +I + L +EM + Y+ RFCS L + + A E +
Sbjct: 205 SR-VDRMEIGRTYRYISQEL------GLEMEPVDPKKYVPRFCSELDLPEEVQLKANEII 257
>gi|448613363|ref|ZP_21663243.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445740260|gb|ELZ91766.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 335
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 119/246 (48%), Gaps = 22/246 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C VV D G+T+C++CGLV+ A SVD EWR F D + RVG P
Sbjct: 40 CPECG--GHVVTDDEHGETVCNDCGLVVTADSVDRGPEWRAFDAREKD-EKSRVGAPTTN 96
Query: 66 LLSGGGLSTVIA---KPTAGGS--------TELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
+ GLST I + G S + L + + R S +RNL QA I
Sbjct: 97 TMHDKGLSTNIDWRDRDAYGNSLGARQRQKMQRLRKWNERFRTRDSK-ERNLKQALGEID 155
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ D L GR+ E + +C Y A R PR++ E
Sbjct: 156 RMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSLDEIAE 215
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ K E+ R +I + L S+E+ Y+ RF S LG+++++ A++
Sbjct: 216 VSR-VEKSEVARTYRYIAREL------SLEVKPADPEQYVPRFASELGLSDESKMRARKL 268
Query: 235 VQKSED 240
++ +++
Sbjct: 269 LKNAKE 274
>gi|448411807|ref|ZP_21576163.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
gi|445669741|gb|ELZ22349.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
Length = 329
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 109/231 (47%), Gaps = 18/231 (7%)
Query: 16 VFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTV 75
+ D G+T+C ECG+VLE VD EWR F + RVG P +L GLS+V
Sbjct: 44 ITDEKRGETVCQECGVVLEEDVVDRGPEWRSF-DARDKAQKSRVGSPTTEMLHDKGLSSV 102
Query: 76 IAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISAMSDRLGLVTT 125
I + + LS + +R S DRNL QA I M+ LG+
Sbjct: 103 IDWQNKDANGQTLSAKKREQMSRLRTWDERFRSQSAQDRNLKQALGEIDRMASALGIPKD 162
Query: 126 IKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIG 185
++ A+ IY++ D++ + GR+ EA+ LY RQ PRT+ E +V+ +KE
Sbjct: 163 ARETASVIYRRALDEELIPGRSIEAMATGSLYAGARQAGVPRTLDELETVSR-VDRKEFA 221
Query: 186 RAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQ 236
RA +I + LE + M + Y+ R S+L + + + A E ++
Sbjct: 222 RAYRYIARELE------LAMEPTDPAQYVPRLVSDLDLPEETKQRAVELLE 266
>gi|448503002|ref|ZP_21612866.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445693404|gb|ELZ45556.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 317
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 114/240 (47%), Gaps = 20/240 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +E + + + +C +CGLVL+ ++D EWR F N + RVG P+
Sbjct: 25 CPECD--SENIVTDADQELVCEDCGLVLDERNIDRGPEWRAF-NHNERQSKSRVGAPITE 81
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A I
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ ++ +RGR+ E + A LY ACRQE PR++ E V
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEVADV 201
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +E+ + ++ RF S L ++ + A E +
Sbjct: 202 SR-VPQKEIGRTYRYISQEL------GLELKPVDPKQFVPRFASALQLSEEVQSKATEII 254
>gi|452208372|ref|YP_007488494.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452084472|emb|CCQ37817.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 330
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 116/242 (47%), Gaps = 22/242 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D + +T C +CG VLE+ +D EWR F + +D RVG P
Sbjct: 35 CPECS--GRIVHDEAQAETHCQDCGRVLESDQIDRGPEWRAF-DSREKNDKSRVGAPQTQ 91
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR-----------SSHPDRNLIQAFKSIS 114
L GLSTVI LS SL + + R ++ +RNL QA I+
Sbjct: 92 QLHDRGLSTVIDWRDEDAYGRSLS-SLQRKKMRRLRKWDERFRTKNNRERNLKQALGEIN 150
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LG I++ + +Y++ ++ LRGR+ E + A LY R EN PRT+ + +
Sbjct: 151 RMASALGCPDPIRETTSVLYRQALEKDMLRGRSVEGMATAALYAGSRLENAPRTLDDVAA 210
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ K EI R ++ LE +EM Y+ RF S LG +++ + ++E
Sbjct: 211 VSR-VDKIEIERTYRYLADELE------LEMTPTDPEAYVARFASELGCSDETERRSREL 263
Query: 235 VQ 236
+Q
Sbjct: 264 IQ 265
>gi|448301022|ref|ZP_21491017.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445584536|gb|ELY38851.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 321
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 112/240 (46%), Gaps = 19/240 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + +V + C +CGL+LE ++D EWR F ++S RVG P
Sbjct: 27 CPECDS-SSLVRSADESEVSCEDCGLILEEETIDRGPEWRAF-DQSERDSKSRVGAPTTQ 84
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A
Sbjct: 85 TMHDKGLTTTIDWKNKDAYGRSLSSDKRSQMNRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ +Y++ D+ +RGR+ E + + LY ACR E PR++ E +V
Sbjct: 145 MASALGVPRSVREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEVAAV 204
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ + EIGR +I + L S+EM + Y+ RFCS L ++ + A E +
Sbjct: 205 SR-VERMEIGRTYRYISQEL------SLEMEPVDPKKYVPRFCSELSLSEEVQAKANEII 257
>gi|448580042|ref|ZP_21644871.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|448590025|ref|ZP_21650084.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445722715|gb|ELZ74372.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445735140|gb|ELZ86693.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 334
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 118/246 (47%), Gaps = 22/246 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C VV D G+T+C +CGLV+ A SVD EWR F D + RVG P
Sbjct: 39 CPECG--GHVVTDDEHGETVCDDCGLVVTADSVDRGPEWRAFDAREKD-EKSRVGAPTTN 95
Query: 66 LLSGGGLSTVIA---KPTAGGS--------TELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
+ GLST I + G S + L + + R S +RNL QA I
Sbjct: 96 TMHDKGLSTNIDWRDRDAYGNSLGARQRQKMQRLRKWNERFRTRDSK-ERNLKQALGEID 154
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ D L GR+ E + +C Y A R PR++ E
Sbjct: 155 RMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSLDEIAE 214
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ K E+ R +I + L S+E+ Y+ RF S LG+++++ A++
Sbjct: 215 VSR-VEKSEVARTYRYIAREL------SLEVKPADPEQYVPRFASELGLSDESKMRARKL 267
Query: 235 VQKSED 240
++ +++
Sbjct: 268 LKNAKE 273
>gi|448303109|ref|ZP_21493059.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445594116|gb|ELY48283.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 323
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 113/242 (46%), Gaps = 20/242 (8%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
YC +C ++ D +T+C++CGLV+E +D EWR F D RVG P
Sbjct: 27 YCPECG--GRLISDTEHAETVCTDCGLVVEEDEIDRGPEWRAFDAAEKDQKS-RVGAPTT 83
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSIS 114
++ GLST I LS + R +RNL QA I
Sbjct: 84 KMMHDQGLSTNIGWQDKDAYGRALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 143
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ ++ L GR+ E + A LY A RQ PR++ E +
Sbjct: 144 RMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISA 203
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ K E+ R +I++ L +E+ Y+ RF S+L ++++ + A+E
Sbjct: 204 VSR-VEKMELTRTYRYIIREL------GLEVKPADPEHYVPRFVSDLDLSDETERMAREL 256
Query: 235 VQ 236
++
Sbjct: 257 LE 258
>gi|448488467|ref|ZP_21607303.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445696157|gb|ELZ48250.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
Length = 324
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 114/233 (48%), Gaps = 22/233 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C V+ D G+T+CS+CGLV+EA SVD EWR F + D + RVG P
Sbjct: 30 CPECG--GHVINDEEHGETVCSDCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTN 86
Query: 66 LLSGGGLSTVIA---KPTAGGS--------TELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
+ GLST I K G S + L + + R S +RNL QA I
Sbjct: 87 TMHDKGLSTNIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSK-ERNLKQALGEID 145
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ GL +++ A+ IY++ D+ L GR+ E + +C+Y A R PR++ E
Sbjct: 146 RMASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIAD 205
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQA 227
V+ K EI R ++V+ L+ +E+ Y+ RF S+L ++ ++
Sbjct: 206 VSR-VEKAEIARTYRYVVRELK------LEVKPADPEQYVPRFASDLELSEES 251
>gi|386875751|ref|ZP_10117910.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386806507|gb|EIJ65967.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 304
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 123/251 (49%), Gaps = 23/251 (9%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
+S C C + ++ D G+ C +CG V+ S + EWR F + DP R G P
Sbjct: 7 NSNCLRCGK-NSILVDEVTGEQFCGKCGYVITEKSQESGPEWRSFQKDGG-ADPARTGAP 64
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGSLG----KLQARSSHP------DRNLIQAFKS 112
+ ++ GLSTVI S + LS S+ +L+ S DRNL QA
Sbjct: 65 SSLMIHDMGLSTVINPLNKDASGKPLSTSMKSTIERLRTWDSRSQVHAPVDRNLRQALSD 124
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
++ + D++ + + ++A IY+K ++K +RGR+ A++AA LY ACR PRT+K+
Sbjct: 125 LNKLKDKVSVPANVLEKAAYIYRKALEKKLVRGRSISAMIAASLYAACRDTETPRTLKDV 184
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQ----AV 228
AN +K+I R + LE ++M + + + R S L ++ + AV
Sbjct: 185 SDAAN-VKRKDIARCYRLLHHELE------LKMPVVDSIQCIARISSKLEISEKTKRYAV 237
Query: 229 KAAQEAVQKSE 239
K ++A ++ E
Sbjct: 238 KVLKDAQERKE 248
>gi|148508035|gb|ABQ75833.1| transcription initiation factor TFB [uncultured haloarchaeon]
Length = 331
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 125/249 (50%), Gaps = 22/249 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D + G+T+C++CGLV++ S+D EWR F + D RVG P
Sbjct: 36 CPECS--GNLVTDGARGETVCADCGLVVDEDSIDRGPEWRAFDSAERDQ-KSRVGAPTTN 92
Query: 66 LLSGGGLSTVIA---KPTAGGS--------TELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
L+ GLST I K G S + L + + R S +RNL QA I
Sbjct: 93 LMHDKGLSTNIGWRNKDAYGNSLSARQREQMQRLRTWNERFRTRDSK-ERNLKQALGEID 151
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ + L GR+ E + A LY + RQ PR++ E
Sbjct: 152 RMASALGLPENVRETASVIYRRALAEDLLPGRSIEGVATAALYASARQAGTPRSLDEIER 211
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ K E+ R ++V+ L+ +E+ Y+ RF S+L ++++A + A++
Sbjct: 212 VSR-VEKMELTRTYRYVVRELK------LEIEPADPEQYVPRFASDLDLSDEAERQARQL 264
Query: 235 VQKSEDLDI 243
++ +++ I
Sbjct: 265 LKNAKEAAI 273
>gi|448306111|ref|ZP_21496021.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
gi|445598749|gb|ELY52801.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
Length = 325
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 118/245 (48%), Gaps = 22/245 (8%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
+C +C ++ D +T+C++CGLV+E VD EWR F + S + RVG P
Sbjct: 29 HCPECG--GRLITDEEHAETVCTDCGLVVEEDEVDRGPEWRAF-DASEKDEKSRVGAPTT 85
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSL-----------GKLQARSSHPDRNLIQAFKSI 113
++ GLST I LS + + R S +RNL QA I
Sbjct: 86 NMMHDQGLSTNIGWQNKDAYGRALSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGEI 144
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M+ LGL +++ A+ IY++ ++ L GR+ E + A LY A RQ PR++ E
Sbjct: 145 DRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEIS 204
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
+V+ K E+ R +I++ L +E+ Y+ RF S+L ++++ + A+E
Sbjct: 205 AVSR-VEKMELTRTYRYIIREL------GLEVKPADPEHYVPRFISDLDLSDETERMARE 257
Query: 234 AVQKS 238
++ +
Sbjct: 258 LLESA 262
>gi|331218510|ref|XP_003321932.1| hypothetical protein PGTG_03469 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309300922|gb|EFP77513.1| hypothetical protein PGTG_03469 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 345
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 123/228 (53%), Gaps = 15/228 (6%)
Query: 6 CADCK--RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
C DCK RL E + S+GD +C CGLV+ VD SEWR FA + D DP RVGGP
Sbjct: 29 CPDCKCARLVE---EFSSGDLVCGSCGLVVGDRIVDTRSEWRTFAGDEGD-DPSRVGGPS 84
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
NPLL+G I G + + +A + ++++ AF SI M D + L
Sbjct: 85 NPLLNGVETFETIISFKDGNTGVARDLNRAATRAAVKNGEKSVAAAFLSIQDMCDTISLP 144
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
T+ D A ++Y++ +++K LRG+ +AI+AAC++IACRQ R+ KE ++ KK+
Sbjct: 145 RTVTDIAKQLYRRADEEKLLRGKQVDAIIAACIFIACRQSKVGRSFKEIVALTR-VPKKQ 203
Query: 184 IGRAKEFIVKHLE-AEMGQSVEMGTI-------HASDYLRRFCSNLGM 223
IG+ + + E + +G + T A D + RFCS+LG+
Sbjct: 204 IGQCFKALSAAFETSAVGGGGALNTTTGETSGAGAEDLMARFCSHLGL 251
>gi|71030250|ref|XP_764767.1| transcription initiation factor TFIIB [Theileria parva strain
Muguga]
gi|68351723|gb|EAN32484.1| transcription initiation factor TFIIB, putative [Theileria parva]
Length = 342
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 109/236 (46%), Gaps = 14/236 (5%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES---SDHDPVRVGGP 62
C+ CK + VV DH G+ +C CG VLE + E EWR F ES + + RVG
Sbjct: 15 CSTCKDSSTVVVDHVEGNQLCLSCGRVLENVLISEQQEWRNFNTESLGQAGAEKSRVGEL 74
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGL 122
+ L G +T I GGS ++ L L DR L +F + ++D L +
Sbjct: 75 NDVWLDGTSSTTFI-----GGSKKM--QHLQNLMTNYDSSDRALKTSFTLLRTIADSLNI 127
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+ +RA EI K++ LR R A LY+ACR+ + R+++E T K
Sbjct: 128 RDQVVERAKEILKELNQMGHLRSRANSLNTLAVLYLACRESSVSRSLRELVIYDRSLTVK 187
Query: 183 EIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKS 238
E+GRA + L+ + T S + RFCS L ++N+ + + QKS
Sbjct: 188 ELGRA----INRLKKVLPNRGNAPTEDVSQLMPRFCSRLNLSNEIMTTCEAVAQKS 239
>gi|448704008|ref|ZP_21700548.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
gi|445796624|gb|EMA47125.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
Length = 344
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 122/250 (48%), Gaps = 23/250 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + D G+ +C++CGLV + +D EWR F E+SD RVG P+
Sbjct: 46 CPEC--AGRIRPDSDRGERVCADCGLVSDGDEIDYGPEWRSFEGETSDRS--RVGAPITE 101
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSG----SLGKLQA---RSSHPD---RNLIQAFKSISA 115
GLST I +SG L +L+ R + D RNL QA +
Sbjct: 102 RRHDKGLSTTIGWENRDAYGNTISGEKRAQLNRLRTWNERFTSKDARERNLKQALGELER 161
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL ++ A IY++ +++ L GR+ EA+ A LY A RQ+ PRT F SV
Sbjct: 162 MASALGLSEPCRETAAVIYRRAVEEELLPGRSIEAMTTASLYAAARQQGTPRTFSAFESV 221
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ + RA ++ LE +E+ YLR+F S+L ++++ + A++ +
Sbjct: 222 SR-VDDESTKRAYRYLSSELE------LEIAPPEPEQYLRQFASDLAVSDETERLARDVL 274
Query: 236 Q--KSEDLDI 243
+ K+E+L I
Sbjct: 275 EAAKAEELHI 284
>gi|389847221|ref|YP_006349460.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448614833|ref|ZP_21663861.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388244527|gb|AFK19473.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445752920|gb|EMA04339.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 331
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 122/250 (48%), Gaps = 24/250 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +C +V D G+T+C ECGLV+E VD EWR F ++S+ D RVG P
Sbjct: 36 CPECG--GNLVQDDEHGETVCQECGLVVEDTVVDRGPEWRAF--DASERDSKSRVGAPTT 91
Query: 65 PLLSGGGLSTVIA-----------KPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSI 113
++ GLST I P + L + + R S +RNL QA I
Sbjct: 92 KMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSK-ERNLKQALGEI 150
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M+ LGL +++ A+ IY++ + L GR+ E + A LY A R + PR++ E
Sbjct: 151 DRMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATAALYGAARMADTPRSLDELE 210
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
V+ K E+ R +IV+ L+ +E+ Y+ RF S L ++++A + A++
Sbjct: 211 KVSR-VDKMELTRTYRYIVRELK------LEIKPADPEQYVPRFASELDLSDEAERQARQ 263
Query: 234 AVQKSEDLDI 243
++ +++ I
Sbjct: 264 LLRDAKETGI 273
>gi|448726653|ref|ZP_21709047.1| transcription initiation factor TFB [Halococcus morrhuae DSM 1307]
gi|445793983|gb|EMA44547.1| transcription initiation factor TFB [Halococcus morrhuae DSM 1307]
Length = 305
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 111/225 (49%), Gaps = 18/225 (8%)
Query: 22 GDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA---K 78
G+ +C +CGLV+E ++D EWR F N + RVG P + GL+T I K
Sbjct: 26 GELVCEDCGLVVEEENIDPGPEWRAF-NHAERQQKSRVGAPTTQTMHDKGLTTTIDWKDK 84
Query: 79 PTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRAN 131
G S S L K Q R D RNL A I M+ LG+ ++++ A+
Sbjct: 85 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 144
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
IY++ +RGR+ E + + LY ACR+E PR+++E V+ +KEIGR ++
Sbjct: 145 VIYRRSLADDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEVSR-VERKEIGRTYRYV 203
Query: 192 VKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQ 236
+ L ++EM + Y+ RFCS L ++ + A + ++
Sbjct: 204 SQEL------ALEMRPVDPKKYVPRFCSELTLSEEVQAKANDIIE 242
>gi|435846604|ref|YP_007308854.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433672872|gb|AGB37064.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 321
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 110/240 (45%), Gaps = 19/240 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ T +V + C +CGL+LE +D EWR F N+S RVG P
Sbjct: 27 CPECES-TALVRSSDGSEVSCEDCGLILEEEGIDHGPEWRAF-NQSERDSKSRVGAPTTQ 84
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A
Sbjct: 85 TMHDKGLTTTIDWKNKDAYGRSLSSEKRSQMSRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ +Y++ D+ +RGR+ E + + LY ACR E PR++ E +V
Sbjct: 145 MASALGVPRSVREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEVAAV 204
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ + EIGR +I + L +EM + Y+ RFCS L + + A E +
Sbjct: 205 SR-VDRMEIGRTYRYISQEL------GLEMEPVDPKKYVPRFCSELDLPEEVQLKANEII 257
>gi|433590514|ref|YP_007280010.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|433305294|gb|AGB31106.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
Length = 325
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 120/245 (48%), Gaps = 26/245 (10%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
+C +C +V D +T+C++CGLV+E +D EWR F D + RVG P
Sbjct: 29 HCPECG--GRLVSDDEHAETVCTDCGLVVEEDEIDRGPEWRAFDAAEKD-EKSRVGAPTT 85
Query: 65 PLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFK 111
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 86 NMMHDQGLSTNIGWQDKDAYGRS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALG 142
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
I M+ LGL +++ A+ IY++ ++ L GR+ E + A LY A RQ PR++ E
Sbjct: 143 EIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDE 202
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
+V+ K E+ R +I++ L +E+ Y+ RF S+L ++++ + A
Sbjct: 203 ISAVSR-VEKMELTRTYRYIIREL------GLEVKPADPEHYVPRFVSDLDLSDETERMA 255
Query: 232 QEAVQ 236
+E ++
Sbjct: 256 RELLE 260
>gi|448732733|ref|ZP_21715002.1| Transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
gi|445804263|gb|EMA54522.1| Transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
Length = 340
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 114/241 (47%), Gaps = 20/241 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+T C+ECGLV++ +D EWR F + D R G P
Sbjct: 33 CPECG--GRLVNDTEHGETTCAECGLVVKEDEIDHGPEWRAFDSAERDRKK-RTGAPTTK 89
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISA 115
L+ GLS+ I LS + +R + +RNL QA I
Sbjct: 90 LMHDKGLSSQIGWQDKDAYGNALSSRKRQQMSRLRTWDERFRTRNSKERNLKQALAEIER 149
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M LG+ +++ A+ IY++ + L GR+ E + A LY A RQ PR+V+E +V
Sbjct: 150 MGSALGVPKDVRETASVIYRRALSEDLLPGRSIEGVSTAALYAAIRQMGLPRSVEEVSAV 209
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ + E RA +I + L S+E+G YL RF S+LG++++ A+E +
Sbjct: 210 SR-VDEMEFKRAYRYINQEL------SLEIGPPAPDQYLPRFASDLGVSDETEGRARELI 262
Query: 236 Q 236
Q
Sbjct: 263 Q 263
>gi|448627270|ref|ZP_21671883.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445759099|gb|EMA10386.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
Length = 322
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 115/244 (47%), Gaps = 26/244 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C VV D G+T+C +CGLV+E +D EWR F + D RVG P
Sbjct: 29 CPECS--GNVVTDTEHGETVCEDCGLVVEEDEIDRGPEWRAFNSAEKDRKS-RVGAPTTN 85
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 86 MMHDKGLSTNIGWQNKDAYGRS--LSSEQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 142
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ L GR+ E + + LY A R PR++ E
Sbjct: 143 IDRMASALGLPQNVRETASVIYRRALGDDLLPGRSIEGVATSALYAAARMAGNPRSLDEM 202
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ K E+ R +IV+ L S+E+ YL RF S+L ++ + + A+
Sbjct: 203 ARVSR-VEKMELTRTYRYIVREL------SLEVQPADPEHYLPRFISDLELSEETQRQAR 255
Query: 233 EAVQ 236
+ V+
Sbjct: 256 DLVE 259
>gi|448383049|ref|ZP_21562478.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|445660229|gb|ELZ13026.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 325
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 120/245 (48%), Gaps = 26/245 (10%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
+C +C +V D +T+C++CGLV+E +D EWR F D + RVG P
Sbjct: 29 HCPECG--GRLVSDDEHAETVCTDCGLVVEEDEIDRGPEWRAFDAAEKD-EKSRVGAPTT 85
Query: 65 PLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFK 111
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 86 NMMHDQGLSTNIGWQDKDAYGRS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALG 142
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
I M+ LGL +++ A+ IY++ ++ L GR+ E + A LY A RQ PR++ E
Sbjct: 143 EIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDE 202
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
+V+ K E+ R +I++ L +E+ Y+ RF S+L ++++ + A
Sbjct: 203 ISAVSR-VEKMELTRTYRYIIREL------GLEVKPADPEHYVPRFVSDLDLSDETERMA 255
Query: 232 QEAVQ 236
+E ++
Sbjct: 256 RELLE 260
>gi|322371117|ref|ZP_08045669.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
gi|320549107|gb|EFW90769.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
Length = 324
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 114/240 (47%), Gaps = 26/240 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+ +C +CGLV+E +VD EWR F + S RVG P
Sbjct: 29 CPECG--GPLVTDEERGERVCDDCGLVVEEDAVDRGPEWRAF-DASEREQKSRVGAPTTN 85
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I + G S L S K+Q R S +RNL QA
Sbjct: 86 MMHDKGLSTNIDWRDRDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQALGE 142
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL T+++ A+ IY++ D+ L GR+ E + LY A RQ PR++ E
Sbjct: 143 IDRMASSLGLPDTVRETASVIYRRALDEDLLPGRSIEGVATGALYAAARQARTPRSLDEL 202
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
+V+ K EI R +I + L +E+ Y+ RF S L ++++ + A+
Sbjct: 203 TAVSR-VEKDEIARTYRYIAREL------GLEIEPADPKSYVPRFASELDLSDETERRAR 255
>gi|448381827|ref|ZP_21561803.1| transcription initiation factor IIB [Haloterrigena thermotolerans
DSM 11522]
gi|445662908|gb|ELZ15671.1| transcription initiation factor IIB [Haloterrigena thermotolerans
DSM 11522]
Length = 341
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 117/241 (48%), Gaps = 26/241 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D +T+C++CGLV+E +D EWR F D RVG P
Sbjct: 47 CPECG--GRLVSDDGRAETVCTDCGLVVEEDEIDRGPEWRAFDAAEKDEK-SRVGAPTTN 103
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R+S +RNL QA
Sbjct: 104 MMHDQGLSTNIGWQDKDAYGRS--LSSRQREKMQRLRTWNERFRTRNSK-ERNLKQALGE 160
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL T+++ ++ IY++ ++ L GR+ E + A LY A RQ PR++ E
Sbjct: 161 IDRMASALGLPDTVRETSSVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEI 220
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
+V+ K EI R ++V+ L +E+ Y+ RF S+L + ++ + A+
Sbjct: 221 AAVSR-VEKAEIARTYRYVVREL------GLEVQPADPESYVPRFASDLDLADETERRAR 273
Query: 233 E 233
+
Sbjct: 274 D 274
>gi|212224386|ref|YP_002307622.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
gi|212009343|gb|ACJ16725.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
Length = 303
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 126/249 (50%), Gaps = 20/249 (8%)
Query: 1 MAD-SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRV 59
MAD + C C ++ +D G+ +CS CG V++ +DE EWR F + R
Sbjct: 1 MADKNICPVCGS-DKLFYDPRRGEIVCSVCGYVVQQNVIDEGPEWRAF-DPDQRTKRART 58
Query: 60 GGPLNPLLSGGGLSTVI---------AKPTAGGSTELLSGSLGKLQAR-SSHPDRNLIQA 109
G P+ ++ GLST I + T T++ + + + R + +RNL A
Sbjct: 59 GAPMTLMIHDKGLSTDIDWRDRDIHGNQITGMYRTKMRRLRMWQRRMRINDAAERNLAFA 118
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
+ M+ ++ L +K+ A +Y+K +K +RGR+ E +V+A LY ACR E PRT+
Sbjct: 119 LSELDRMAAQMMLPRRVKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTL 178
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVK 229
E +V+ TKKEIGR+ F+ + G + + +Y+ RF +L ++ + K
Sbjct: 179 DEIAAVSK-VTKKEIGRSYRFLAR------GLGLNLRPTSPIEYIDRFGDSLDVSQRTKK 231
Query: 230 AAQEAVQKS 238
A+E +Q++
Sbjct: 232 RAKEILQEA 240
>gi|435846578|ref|YP_007308828.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433672846|gb|AGB37038.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 328
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 115/247 (46%), Gaps = 19/247 (7%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
S C++C ++VV S G+ IC CGLV+E +D EWR F N + RVG P
Sbjct: 34 STCSECGS-SDVVQHPSPGERICENCGLVIEEGMIDSGPEWRAF-NHQERQNKSRVGAPT 91
Query: 64 NPLLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSI 113
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 92 TQTIHDKGLTTQIDWKNKDAYGRSISSKKRSQMNRLRKWQTRIRTKDAGERNLQFALSEI 151
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M+ LG+ +++ + IY++ + +RGR+ E + A LY CRQE PR+++E
Sbjct: 152 ERMASALGVPKAVREVTSVIYRRALQEDLIRGRSIEGVATAALYAGCRQEGIPRSLEEVT 211
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
V+ + EI R +I L +E+ I Y+ RF S L ++ + A+E
Sbjct: 212 EVSR-IERIEISRTYRYISNEL------GLELLPIDPKQYVPRFTSKLDLSQEVETKAKE 264
Query: 234 AVQKSED 240
+ ++ D
Sbjct: 265 IIDETAD 271
>gi|307595018|ref|YP_003901335.1| Zinc finger TFIIB-type domain-containing protein [Vulcanisaeta
distributa DSM 14429]
gi|307550219|gb|ADN50284.1| Zinc finger TFIIB-type domain protein [Vulcanisaeta distributa DSM
14429]
Length = 336
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 114/237 (48%), Gaps = 23/237 (9%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
YC T +FD+ G IC++CG V+ + +D EWR F E + R GGPLN
Sbjct: 42 YCGS----TTFIFDYENGQVICAKCGSVVLEHVIDLRPEWRAFTAEEKEAR-ARAGGPLN 96
Query: 65 PLLSGGGLSTVI--AKPTAGGSTELLSGSLGKLQAR--------SSHPDRNLIQAFKSIS 114
L S L+T I A A G + L L+ R + +RN+IQA +S
Sbjct: 97 RLTSEA-LTTTIDWATKDASGKELDIKRKLEILKYRKWQQRVRVQTSYERNIIQAMNELS 155
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
+S +LG+ D A IY++V + +RGR+ EAIVAACL++ACR+ PR++ E
Sbjct: 156 RISSQLGIPKACVDEAMGIYEQVLTKGLVRGRSVEAIVAACLHMACRKIGMPRSLDEISQ 215
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
++KE+ R I + L V + Y+ R L ++ + +K A
Sbjct: 216 YTRA-SRKEVARCFRLIAREL------GVRLPLSDPKLYVPRIVEQLKLSGEILKEA 265
>gi|294896450|ref|XP_002775563.1| transcription initiation factor IIB, putative [Perkinsus marinus
ATCC 50983]
gi|239881786|gb|EER07379.1| transcription initiation factor IIB, putative [Perkinsus marinus
ATCC 50983]
Length = 199
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 96/178 (53%), Gaps = 8/178 (4%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +CK T++V D++ G IC CGL+LE +D++ EWR F+ +SS D RVGG N
Sbjct: 13 CPECKGKTQIVVDYAQGSVICRNCGLILEMSCIDDSQEWRSFS-DSSGPDRNRVGGTTNN 71
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTT 125
+L GGL T + G++ L + + S + DR L + K + + D L L
Sbjct: 72 MLHSGGLGTSVGF----GNSRLARTHM--IAVNSDNVDRTLNKGHKILRDIMDALALPDN 125
Query: 126 IKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
I R +I K+++D L+G+ + A Y+ACRQE R++KE + A T KK+
Sbjct: 126 IYTRCCQILKQMDDSGLLKGKTNYPWLLAVTYMACRQEGAGRSIKEILA-AQPTVKKQ 182
>gi|433639108|ref|YP_007284868.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|433290912|gb|AGB16735.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
Length = 323
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 119/244 (48%), Gaps = 26/244 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++V D +T+C++CGLV+E +D EWR F + D RVG P
Sbjct: 28 CPECG--GQLVSDEEHAETVCTDCGLVVEEDEIDRGPEWRAFDSAERDQKS-RVGAPTTN 84
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 85 MMHDQGLSTNIGWQNKDAYGKS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 141
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ ++ L GR+ E + + LY A RQ PR++ E
Sbjct: 142 IDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEI 201
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ + E+ R +IV+ L S+E+ Y+ RF S+L ++ + + ++
Sbjct: 202 SQVSR-VDRMELTRTYRYIVREL------SLEVKPADPEHYVPRFISDLDLSEETERTSR 254
Query: 233 EAVQ 236
E ++
Sbjct: 255 ELLE 258
>gi|448377625|ref|ZP_21560321.1| transcription factor TFIIB cyclin-like protein [Halovivax asiaticus
JCM 14624]
gi|445655569|gb|ELZ08414.1| transcription factor TFIIB cyclin-like protein [Halovivax asiaticus
JCM 14624]
Length = 323
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 119/244 (48%), Gaps = 26/244 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++V D +T+C++CGLV+E +D EWR F + D RVG P
Sbjct: 28 CPECG--GQLVSDEEHAETVCADCGLVVEEDEIDRGPEWRAFDSSERDQKS-RVGAPTTN 84
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 85 MMHDQGLSTNIGWQNKDAYGKS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 141
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ ++ L GR+ E + + LY A RQ PR++ E
Sbjct: 142 IDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEI 201
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ + E+ R +IV+ L S+E+ Y+ RF S+L ++ + + ++
Sbjct: 202 SQVSR-VDRMELTRTYRYIVREL------SLEVKPADPEHYVPRFISDLDLSEETERTSR 254
Query: 233 EAVQ 236
E ++
Sbjct: 255 ELLE 258
>gi|448323476|ref|ZP_21512935.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
gi|445599623|gb|ELY53653.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
Length = 376
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 109/233 (46%), Gaps = 18/233 (7%)
Query: 16 VFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTV 75
V + G+ I GL+LE +D EWR F N+S RVG P+ + GL+T
Sbjct: 80 VVRTAEGELIHEPTGLILEDDQIDRGPEWRAF-NQSERQSKSRVGAPITQTMHDKGLTTQ 138
Query: 76 IAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTT 125
I + LS L K Q R D RNL A I MS LG+ +
Sbjct: 139 IDWRSKDAYGRSLSSEKRNQMNRLRKWQERIRTKDAGERNLQFALSEIDRMSSALGVPRS 198
Query: 126 IKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIG 185
+++ A+ +Y++ + +RGR+ E + A LY ACRQE PR++ E V+ KEI
Sbjct: 199 VREVASVMYRRALSEDLIRGRSIEGMSTAVLYAACRQEGIPRSLSEVTEVSR-VENKEIA 257
Query: 186 RAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKS 238
R ++ + LE +EM + YL RFCS L ++ + A+E + S
Sbjct: 258 RTYRYVSQELE------LEMRPVDPKKYLPRFCSQLDVSERIQSKAEEIIDTS 304
>gi|336253520|ref|YP_004596627.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335337509|gb|AEH36748.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 332
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 126/251 (50%), Gaps = 22/251 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+ C+ECGLVL+A +D EWR +E +D + RVG PL
Sbjct: 37 CPECS--GRIVHDAEHGEHACAECGLVLDADELDYGPEWRAGDDEDAD-ERRRVGAPLTE 93
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSG----SLGKLQ-------ARSSHPDRNLIQAFKSIS 114
GLST I LS L +L+ A+++ +RNL AF +
Sbjct: 94 RRHDKGLSTTIGWRNQDAYGNELSARKRSQLRRLRTWNERFTAKTAQ-ERNLKHAFGELE 152
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ L L ++ A +Y++ D++ L GR+ EA+ ACLY A RQ PRT F S
Sbjct: 153 RMASALDLPEPCRETAAVLYRRAVDEELLPGRSIEAMATACLYAAARQHGTPRTWATFES 212
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V ++ EIGR + ++L E+G +E+ YL +F S L ++++A A+E
Sbjct: 213 V----SRVEIGRVQR-AYRYLSRELG--LEIAPADPLQYLGQFASALSISDEAEHVAREI 265
Query: 235 VQKSEDLDIRL 245
++ +++ I +
Sbjct: 266 LETAKEKGIHV 276
>gi|13541920|ref|NP_111608.1| transcription initiation factor IIB [Thermoplasma volcanium GSS1]
gi|21363019|sp|Q979P7.1|TF2B2_THEVO RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|14325351|dbj|BAB60255.1| transcription initiation factor B [TFB] [Thermoplasma volcanium
GSS1]
Length = 313
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 126/252 (50%), Gaps = 19/252 (7%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGG 61
A C +C ++ D+ G+ IC++CG V+E +D+ EWR F + D R G
Sbjct: 13 APKRCPECHS-EHLIRDYEHGELICADCGAVIEDSFIDQGPEWRAF-DSDQDERRARTGS 70
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFK 111
P+ L GL+T I+ + + + K R S+ +RNL A +
Sbjct: 71 PMTYLSHDKGLATEISWSNKDYYGKRIPHKNRAQIYRVRKWHQRIRVSNAAERNLSLALQ 130
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
++ + +LG+ IK+ + IY+K ++ +RGR+ E+IV A +Y ACR+ N PRT+ E
Sbjct: 131 LLNDIGAKLGIPKDIKETSALIYRKAVEKNLIRGRSIESIVCASIYAACRKVNIPRTLDE 190
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
A+ KK+IG+A + K L+ + + Y+ +FC+ L + QA+ +
Sbjct: 191 IAK-ASEVNKKKIGKAYRHLAKELDLNLRPTTPFS------YIAQFCNKLDLDKQAIVIS 243
Query: 232 QEAVQKSEDLDI 243
++ V+++ + I
Sbjct: 244 EDIVRQAMSMGI 255
>gi|448457245|ref|ZP_21595740.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445810826|gb|EMA60841.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 330
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 119/244 (48%), Gaps = 29/244 (11%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T V + + +C++CGLV+EA +D EWR F ++ D +P R G PL
Sbjct: 51 CPECGGRTRV----DSAERVCADCGLVVEADRIDHGPEWRSFDDD--DANPKRTGAPLTR 104
Query: 66 LLSGGGLSTVIAKPT-AGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLG 121
GLST I + T G + R S+ DRN + A+ I ++ L
Sbjct: 105 SRHDRGLSTEIGRSTRVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGVLE 164
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +++D A ++ +D+ LRGR+ E AAC+Y+ACR + RTV+E C
Sbjct: 165 LPDSVRDTACTLFDSAQDESLLRGRSLEGFAAACVYVACRTADVARTVEEIC-------- 216
Query: 182 KEIGRAKEFIVKHLEAEMGQSVEMG----TIHASDYLRRFCSNL----GMTNQAVKAAQE 233
G AK + +H A + E+G ++YL RF S+L G+ +A + A+
Sbjct: 217 ---GEAKATVDEHQAAFDAMNRELGLPIAPTGPAEYLPRFASDLDCDAGVERRAGELAER 273
Query: 234 AVQK 237
AV++
Sbjct: 274 AVEE 277
>gi|448401933|ref|ZP_21571844.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445665991|gb|ELZ18662.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 325
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 115/242 (47%), Gaps = 22/242 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D +T+C+ECGLV+E +D EWR F D + RVG P
Sbjct: 30 CPECG--GRLVSDDEHAETVCTECGLVVEEDEIDRGPEWRAFDAAEKD-EKSRVGAPTTN 86
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSL-----------GKLQARSSHPDRNLIQAFKSIS 114
++ GLST I LS + + R S +RNL QA I
Sbjct: 87 MMHDQGLSTNIGWQDKDAYGRALSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGEID 145
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ ++ L GR+ E + A LY A RQ PR++ E +
Sbjct: 146 RMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISA 205
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ K E+ R +I++ L +E+ Y+ RF S+L ++++ + A+E
Sbjct: 206 VSR-VEKMELTRTYRYIIREL------GLEVKPADPEHYVPRFVSDLDLSDETERMAREL 258
Query: 235 VQ 236
++
Sbjct: 259 LE 260
>gi|110669504|ref|YP_659315.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109627251|emb|CAJ53741.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 314
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 112/228 (49%), Gaps = 25/228 (10%)
Query: 18 DHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA 77
+++ +TIC +CGLVL Y +D EWR FA+++++ P R G PL GLST I
Sbjct: 37 ENTGEETICGDCGLVLSEYRIDHGPEWRSFADDTTN--PKRTGAPLTRSRHDRGLSTEI- 93
Query: 78 KPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
G + L+G + AR S+ +RN + AF I ++ L L I+
Sbjct: 94 -----GRSIRLTGRKRRQFARLRRQHNRARISTKRERNQVYAFTEIRRLTGALSLPKQIR 148
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
D A +++ + + LRGR+ E AAC+Y ACR RT++E +A T+ ++
Sbjct: 149 DDACSLFRSAQSEDLLRGRSLEGFAAACVYAACRVAGVARTIEEITDIAKATSAEQ---- 204
Query: 188 KEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
L E+G + +G I + YL RF S L + + + A E +
Sbjct: 205 -RAAYTALNRELG--LPIGPIDPAQYLPRFASELELPSNIERRACEYI 249
>gi|448309529|ref|ZP_21499387.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
gi|445589952|gb|ELY44175.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
Length = 325
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 115/238 (48%), Gaps = 22/238 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D +T+C +CGLV+E +D EWR F N S + RVG P
Sbjct: 31 CPECG--GRLVSDTEHAETVCDDCGLVVEEGEIDHGPEWRAF-NASEKDEKSRVGAPTTN 87
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSL-----------GKLQARSSHPDRNLIQAFKSIS 114
++ GLST I + LS + + R S +RNL QA I
Sbjct: 88 MMHDQGLSTNIGWQNKDAYGKSLSNRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGEID 146
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL ++++ A+ IY++ ++ L GR+ E + + LY A RQ PR++ E +
Sbjct: 147 RMASALGLPKSVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEITA 206
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ K EI R ++++ L +E+ +Y+ RF S+L ++++ + A+
Sbjct: 207 VSR-VEKDEIARTYRYVIREL------GLEVQPADPENYVPRFASDLDLSDETERRAR 257
>gi|345006049|ref|YP_004808902.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344321675|gb|AEN06529.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 324
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 117/237 (49%), Gaps = 20/237 (8%)
Query: 18 DHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP-VRVGGPLNPLLSGGGLSTVI 76
D + +T+C++CGLV+E ++D EWR F +SS+ D RVG P ++ GLST I
Sbjct: 33 DEAQAETVCNDCGLVVEEDAIDRGPEWRAF--DSSEKDKKSRVGAPTTKMMHDDGLSTNI 90
Query: 77 AKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISAMSDRLGLVTTI 126
LS S + R H +RNL QA I M+ LGL +
Sbjct: 91 GWQNKDAYGNSLSASQRQKMQRLRTWNERFRTRDHKERNLKQALGEIDRMASALGLPENV 150
Query: 127 KDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGR 186
++ A+ IY++ + L GR+ E I A L+ A R N PR++ E +V+ + R
Sbjct: 151 RETASVIYRRALAEDLLPGRSIEGIATASLHAAARMGNVPRSLDEMAAVSR-VDQATFKR 209
Query: 187 AKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
A +IV+ L S+E+ +YL RF S L ++++ A+E ++ ++ ++
Sbjct: 210 AYRYIVREL------SLEVQPADPLEYLPRFASELELSDETEHRARELLETAKRQNV 260
>gi|407462627|ref|YP_006773944.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046249|gb|AFS81002.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 303
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C D K +T D + G+ C +CG V+ D +EWR F+N+ + + R G +
Sbjct: 15 CGDKKMIT----DENTGELFCGKCGFVVSDKIADTGAEWRSFSND--EGNKARTGAGTSL 68
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSL-----------GKLQARSSHPDRNLIQAFKSIS 114
+ GLSTVI + + LS S+ + QA SS DRNL QA +
Sbjct: 69 TMHDMGLSTVIGAANKDSTGKPLSASVKSSIERLRTWDSRSQAHSS-ADRNLRQALNEMD 127
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
+ D+L L + ++A IY+K ++K +RGR+ + +VAACLY +CR PRT+ +
Sbjct: 128 KLKDKLALTDAVIEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTETPRTLDDVAK 187
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
N +K++ R I + LE +M
Sbjct: 188 GIN-IRRKDVARCYRLIFRELELKM 211
>gi|385804962|ref|YP_005841362.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339730454|emb|CCC41793.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 314
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 112/228 (49%), Gaps = 25/228 (10%)
Query: 18 DHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA 77
+++ +TIC +CGLVL Y +D EWR FA+++++ P R G PL GLST I
Sbjct: 37 ENTGEETICGDCGLVLSEYRIDHGPEWRSFADDTTN--PKRTGAPLTRSRHDRGLSTEI- 93
Query: 78 KPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
G + L+G + AR S+ +RN + AF I ++ L L I+
Sbjct: 94 -----GRSIRLTGRKRRQFARLRRQHNRARISTKRERNQVYAFTEIRRLTGALSLPKQIR 148
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
D A +++ + + LRGR+ E AAC+Y ACR RT++E +A T+ ++
Sbjct: 149 DDACSLFRSAQSEDLLRGRSLEGFAAACVYAACRVAGVARTIEEITDIAKATSAEQ---- 204
Query: 188 KEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
L E+G + +G I + YL RF S L + + + A E +
Sbjct: 205 -RAAYTALNRELG--LPIGPIDPAQYLPRFASELELPSDIERRACEYI 249
>gi|315426667|dbj|BAJ48293.1| transcription initiation factor TFIIB [Candidatus Caldiarchaeum
subterraneum]
gi|315428010|dbj|BAJ49599.1| transcription initiation factor TFIIB [Candidatus Caldiarchaeum
subterraneum]
gi|343485421|dbj|BAJ51075.1| transcription initiation factor TFIIB [Candidatus Caldiarchaeum
subterraneum]
Length = 307
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 115/248 (46%), Gaps = 23/248 (9%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
+ C +C +V D G+ CS CG V++ VD EWR +E RVG PL
Sbjct: 10 ALCPECGN-EMLVTDQRTGEITCSVCGFVIQEKDVDMGPEWRNLEDEEGSRS--RVGAPL 66
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARS---SHPDRNLIQAFKSI 113
+P+ GLSTVI S LS L KL A S S RNL QA +
Sbjct: 67 SPMYRDHGLSTVIEGVDEDASGRKLSKETREKMIRLKKLDATSQINSSETRNLQQAVNIL 126
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
D+L L T+ +RA IY++ +RGR+ ++I+AA Y ACR PR ++EF
Sbjct: 127 QIYVDKLRLSQTVAERAMLIYRRALRAGLVRGRSIKSIMAAATYAACRMLGTPRDLREFE 186
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA-- 231
+K I + ++KHL +++ S Y+ + + +G+ + V+ A
Sbjct: 187 RSYPAVKRKTIAQGYRLLLKHL------GLKVPVADPSIYVNKIAAKVGLDQRTVQEAIR 240
Query: 232 --QEAVQK 237
EAV++
Sbjct: 241 LLNEAVKR 248
>gi|161528495|ref|YP_001582321.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160339796|gb|ABX12883.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 315
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C D K +T D + G+ C +CG V+ D +EWR F+N+ + + R G +
Sbjct: 27 CGDKKMIT----DENTGELFCGKCGFVVSDKIADTGAEWRSFSND--EGNKARTGAGTSL 80
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSL-----------GKLQARSSHPDRNLIQAFKSIS 114
+ GLSTVI + + LS S+ + QA SS DRNL QA +
Sbjct: 81 TMHDMGLSTVIGAANKDSTGKPLSASVKSSIERLRTWDSRSQAHSS-ADRNLRQALNEMD 139
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
+ D+L L + ++A IY+K ++K +RGR+ + +VAACLY +CR PRT+ +
Sbjct: 140 KLKDKLALTDAVIEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTETPRTLDDVAK 199
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
N +K++ R I + LE +M
Sbjct: 200 GIN-IRRKDVARCYRLIFRELELKM 223
>gi|448608903|ref|ZP_21660182.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445747280|gb|ELZ98736.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 331
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 115/239 (48%), Gaps = 24/239 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +C ++ D G+T+C ECGLV+E VD EWR F ++S+ D RVG P
Sbjct: 36 CPECS--GNLIHDDDHGETVCQECGLVVEDTIVDRGPEWRAF--DASERDSKSRVGAPTT 91
Query: 65 PLLSGGGLSTVIA-----------KPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSI 113
++ GLST I P + L + + R S +RNL QA I
Sbjct: 92 KMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSK-ERNLKQALGEI 150
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M+ LGL +++ A+ IY++ + L GR+ E + A LY A R + PR++ E
Sbjct: 151 DRMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATAALYGAARMADTPRSLDELE 210
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ K E+ R +IV+ L+ +E+ Y+ RF S L ++++A + A+
Sbjct: 211 KVSR-VDKMELTRTYRYIVRELK------LEIKPADPEQYVPRFASELDLSDEAERQAR 262
>gi|322369392|ref|ZP_08043957.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
gi|320551124|gb|EFW92773.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
Length = 287
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 107/225 (47%), Gaps = 18/225 (8%)
Query: 22 GDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA---K 78
+ +C +CGLV+E +D EWR F N RVG P + GL+T I K
Sbjct: 8 AELVCDDCGLVVEEERIDPGPEWRAF-NHQERQQKSRVGAPTTQTMHDKGLTTTIDWKDK 66
Query: 79 PTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRAN 131
G S S L K Q R D RNL A I M+ LG+ ++++ A+
Sbjct: 67 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 126
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
IY++ + +RGR+ E + + LY ACR+E PR+++E V+ +KEIGR +I
Sbjct: 127 VIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEVSR-VERKEIGRTYRYI 185
Query: 192 VKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQ 236
+ L +EM + Y+ RFCS L ++ + A ++
Sbjct: 186 SQEL------GLEMKPVDPKKYVPRFCSELELSEEVQSKANNIIE 224
>gi|167042470|gb|ABZ07195.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_ANIW133C7]
Length = 304
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 105/202 (51%), Gaps = 15/202 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH-DPVRVGGPLN 64
C C + T +V DH +G+T CS+CG VL + + EWR F + +H D R G P +
Sbjct: 14 CPRCVKGT-LVTDHESGETFCSKCGFVLSDKAQETGPEWRSFTQD--EHGDRARAGAPTS 70
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLG----KLQARSSHP------DRNLIQAFKSIS 114
+ GL+T+I S + LS S+ +L+ S DRN QAF ++
Sbjct: 71 LTMHDMGLATIINPTNKDASGKPLSSSMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELN 130
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
+ D+L + + ++A IY+K D+ +RGR+ A++A+ LY ACR PR +K+
Sbjct: 131 RLKDKLAISDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTETPRNLKDVEQ 190
Query: 175 VANGTTKKEIGRAKEFIVKHLE 196
AN +K+I R ++K L+
Sbjct: 191 AAN-IKRKDIARCYRLLIKELD 211
>gi|84995592|ref|XP_952518.1| transcription initiation factor tfiib [Theileria annulata strain
Ankara]
gi|65302679|emb|CAI74786.1| transcription initiation factor tfiib, putative [Theileria
annulata]
Length = 341
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 109/236 (46%), Gaps = 14/236 (5%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES---SDHDPVRVGGP 62
C CK + VV DH G+ +C CG VLE + E EWR F ES + + RVG
Sbjct: 15 CTTCKDSSTVVVDHVEGNQLCLNCGRVLENVLISEQQEWRNFNTESLGQAGAEKSRVGEL 74
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGL 122
+ L G +T I GGS ++ L L DR L +F + ++D L +
Sbjct: 75 NDVWLDGTSSTTFI-----GGSKKM--QHLQNLMTNYDSSDRALKTSFTLLRTIADSLNM 127
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+ +R+ EI K++ LR R+ A LY+ACR+ + R+++E T K
Sbjct: 128 RDQVVERSKEILKELNQMGHLRSRSNSLNTLAVLYLACRESSVSRSLRELVIYDRSLTVK 187
Query: 183 EIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKS 238
E+GRA + L+ + T S + RFCS L ++N+ + + QKS
Sbjct: 188 ELGRA----INRLKKVLPNRGNAPTEDVSQLMPRFCSRLNLSNEFMTTCEAIAQKS 239
>gi|325969253|ref|YP_004245445.1| transcription factor TFIIB cyclin-related protein [Vulcanisaeta
moutnovskia 768-28]
gi|323708456|gb|ADY01943.1| Transcription factor TFIIB cyclin-related protein [Vulcanisaeta
moutnovskia 768-28]
Length = 336
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 114/237 (48%), Gaps = 23/237 (9%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
YC T +FD+ G IC++CG V+ + +D EWR F E + R GGPLN
Sbjct: 42 YCGS----TTFIFDYENGQVICAKCGSVVLEHVIDLRPEWRAFTAEEKETR-ARAGGPLN 96
Query: 65 PLLSGGGLSTVI--AKPTAGGSTELLSGSLGKLQAR--------SSHPDRNLIQAFKSIS 114
L S L+T I A A G + L L+ R + +RN+IQA +S
Sbjct: 97 RLTSEA-LTTTIDWATKDASGKELDIKRKLEILKYRKWQQRVRVQTSYERNIIQAMNELS 155
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
+S +LG+ D A +Y++V + +RGR+ EAIVAACL++ACR+ PR++ E
Sbjct: 156 RISSQLGIPKACVDEAMGVYEQVLTKGLVRGRSVEAIVAACLHMACRKIGMPRSLDEISQ 215
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
++KE+ R I + L V + Y+ R L ++ + +K A
Sbjct: 216 YTRA-SRKEVARCFRLIAREL------GVRLPLSDPKLYVPRIVEQLKLSGEILKEA 265
>gi|88603722|ref|YP_503900.1| transcription initiation factor IIB [Methanospirillum hungatei
JF-1]
gi|88189184|gb|ABD42181.1| Transcription initiation factor IIB (TFIIB) [Methanospirillum
hungatei JF-1]
Length = 337
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 126/255 (49%), Gaps = 27/255 (10%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VR 58
+S C +C ++V D+ + +C +CGLV++A +D EWR F DHD R
Sbjct: 38 ESQCPECGS-RQLVHDYERAELVCQQCGLVIDAEFIDRGPEWRAF-----DHDQRMKRSR 91
Query: 59 VGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQ 108
VG P+ + GLST+I +S L K Q R S+ +RNL
Sbjct: 92 VGAPMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAF 151
Query: 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT 168
A + M+ LGL +++ A +Y+ D+ +RGR+ E + AA LY ACRQ + PRT
Sbjct: 152 ALSELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRT 211
Query: 169 VKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAV 228
+ E V+ ++KEIGR FI + L +++ DY+ RFCS L + +
Sbjct: 212 LDEIAEVSR-VSRKEIGRTYRFISREL------GLKLLPTSPIDYVPRFCSGLQLKGEVQ 264
Query: 229 KAAQEAVQKSEDLDI 243
A E ++++ + ++
Sbjct: 265 SRAVEILRQAGEREL 279
>gi|219851004|ref|YP_002465436.1| transcription initiation factor IIB [Methanosphaerula palustris
E1-9c]
gi|254784087|sp|B8GJQ9.1|TF2B_METPE RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|219545263|gb|ACL15713.1| Transcription factor TFIIB cyclin-related [Methanosphaerula
palustris E1-9c]
Length = 334
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 125/255 (49%), Gaps = 27/255 (10%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VR 58
+S C +CK ++V D+ + +C CGLV++ +D EWR F DHD R
Sbjct: 35 ESVCPECKS-RQLVHDYERAELVCQNCGLVIDDDFIDRGPEWRAF-----DHDQRMKRSR 88
Query: 59 VGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQ 108
VG P+ + GLST+I +S L K Q R S+ +RNL
Sbjct: 89 VGAPMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAF 148
Query: 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT 168
A + M+ LGL +++ A +Y+ D+ +RGR+ E + AA LY ACRQ + PRT
Sbjct: 149 ALSELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRT 208
Query: 169 VKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAV 228
+ E V+ ++KEIGR FI + L +++ DY+ RFCS L + +
Sbjct: 209 LDEIAEVSR-VSRKEIGRTYRFISREL------GLKLLPTSPIDYVPRFCSGLTLKGEVQ 261
Query: 229 KAAQEAVQKSEDLDI 243
A E ++++ + ++
Sbjct: 262 SRAVEILRQAAEREL 276
>gi|448322082|ref|ZP_21511555.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
gi|445602070|gb|ELY56050.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
Length = 321
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 109/240 (45%), Gaps = 19/240 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T +V + C +CGL+LE +D EWR F N+S RVG P
Sbjct: 27 CPECDS-TALVRSSDGSEVSCEDCGLILEEGGIDHGPEWRAF-NQSERDSKSRVGAPTTQ 84
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A
Sbjct: 85 TMHDKGLTTTIDWKNKDAYGRSLSSEKRNQMSRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ +Y++ D+ +RGR+ E + + LY ACR E PR++ E +V
Sbjct: 145 MASALGVPRSVREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEVAAV 204
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ + EIGR +I + L +EM + Y+ RFCS L + + A E +
Sbjct: 205 SR-VDRMEIGRTYRYISQEL------GLEMEPVDPKKYVPRFCSELDLPEEVQLKANEII 257
>gi|393796305|ref|ZP_10379669.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 287
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 114/236 (48%), Gaps = 18/236 (7%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ G+ C +CG V+ D EWR F+ E DP R G P + + GL+T
Sbjct: 1 MLTDNDTGERFCGKCGFVISETLQDSGPEWRSFSKEGG-SDPTRTGAPTSLAIHDRGLAT 59
Query: 75 VIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISAMSDRLGLVT 124
+I S + L+ S+ R + DRNL QA ++ + D+L +
Sbjct: 60 IINPINRDSSGKPLTSSMKSTIERLRTWDSRSKVHASSDRNLRQALSELTRLKDKLAVSD 119
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ ++A IY+K D+ +RGR+ A++A+ LY ACR PRT+K+ N KK+I
Sbjct: 120 AVVEKAAYIYRKALDKGLVRGRSISALIASALYAACRDTETPRTLKDVSDAGN-IKKKDI 178
Query: 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
R + + LE ++M + + R S LG++ + + A + ++ +++
Sbjct: 179 ARCYRILHQELE------LKMPVVDPIQCIARIASKLGISEKTKRYAVKVLKTAQE 228
>gi|386874567|ref|ZP_10116805.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386807600|gb|EIJ66981.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 315
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 102/208 (49%), Gaps = 13/208 (6%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGG 61
AD C C + ++ D+ G+ C +CG V+ D EWR F+ E DP R G
Sbjct: 12 ADGICGRCGK-NSMLTDNVTGERFCGKCGFVISETLQDSGPEWRSFSKEGG-TDPTRTGA 69
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFK 111
P + + GL+T+I S + LS S+ R ++ DRNL QA
Sbjct: 70 PTSLTMHDRGLATIINPANKDASGKPLSTSMKSTIERLRTWDSRSKVNASSDRNLRQALS 129
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
++ + D+L L + ++A +Y+K ++ ++GR+ A++A+ LY ACR PRT+K+
Sbjct: 130 ELATLKDKLSLSDPVIEKAAYVYRKALEKGLVKGRSISALIASALYAACRDTETPRTLKD 189
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEM 199
N +K+I R + K L+ +M
Sbjct: 190 VSDAGN-IKRKDIARCYRILHKELDLKM 216
>gi|222479036|ref|YP_002565273.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222451938|gb|ACM56203.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 324
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 114/233 (48%), Gaps = 22/233 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C V+ D G+++C++CGLV+EA SVD EWR F + D + RVG P
Sbjct: 30 CPECD--GNVINDEEHGESVCADCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTN 86
Query: 66 LLSGGGLSTVIA---KPTAGGS--------TELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
+ GLST I K G S + L + + R S +RNL QA I
Sbjct: 87 TMHDKGLSTNIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSK-ERNLKQALGEID 145
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ GL +++ A+ IY++ D+ L GR+ E + +C+Y A R PR++ E
Sbjct: 146 RMASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIAD 205
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQA 227
V+ K EI R ++V+ L+ +E+ Y+ RF S+L ++ ++
Sbjct: 206 VSR-VEKAEIARTYRYVVRELK------LEVKPADPEQYVPRFASDLELSEES 251
>gi|448304757|ref|ZP_21494693.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445590138|gb|ELY44359.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 356
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 125/280 (44%), Gaps = 54/280 (19%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIF----ANESSD----- 53
D C +C +V D G+T+C +CGLV+E SVD EWR F NE S
Sbjct: 28 DLACPEC--AGNLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAFDAAEKNEKSRVGAPT 85
Query: 54 ----HD----------------PVRVGGPLNPLLSGGGLSTVI---AKPTAGGSTELLSG 90
HD RVG P + GLST I K G S L S
Sbjct: 86 TNTMHDXRGPEWRAFDAAEKNEKSRVGAPTTNTMHDKGLSTNIDWRNKDAYGNS--LGSR 143
Query: 91 SLGKLQ----------ARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQ 140
K+Q R S +RNL QA I M+ LGL T +++ A+ IY++ D+
Sbjct: 144 QREKMQRLRKWNERFRTRDSK-ERNLKQALGEIDRMASALGLPTNVRETASVIYRRALDE 202
Query: 141 KPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMG 200
L GR+ E + AC+Y A RQ PR++ E V+ K EI R ++V+ L
Sbjct: 203 DLLPGRSIEGVSTACVYAAARQAGVPRSLDEIADVSR-VEKNEIARTYRYVVREL----- 256
Query: 201 QSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
+E+ Y+ RF S L ++++A A+ +Q +++
Sbjct: 257 -GLEVQPADPESYVPRFASGLDLSDEAEHRARGLLQNAKE 295
>gi|448304716|ref|ZP_21494652.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445590097|gb|ELY44318.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 321
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 111/240 (46%), Gaps = 19/240 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + ++ + C +CGL+LE ++D EWR F N S + RVG P
Sbjct: 27 CPECDS-SSLIRSSDESEVSCEDCGLILEEEAIDRGPEWRAF-NHSERNSKSRVGAPTTQ 84
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A
Sbjct: 85 TMHDKGLTTTIDWKNKDAYGRSLSSDKRNQMNRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ +Y++ + +RGR+ E + + LY ACR E PR++ E +V
Sbjct: 145 MASALGVPRSVREVASVLYRRALSEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEVSAV 204
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ + EIGR +I + L S+EM + Y+ RFCS L ++ + A E +
Sbjct: 205 SR-VDRMEIGRTYRYISQEL------SLEMEPVDPKKYVPRFCSELDLSEEVQAKANEII 257
>gi|448352869|ref|ZP_21541649.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445641511|gb|ELY94588.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
Length = 329
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 117/244 (47%), Gaps = 26/244 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D +T+C ECGLV+E +D EWR F D RVG P
Sbjct: 34 CPECG--GRLISDDEHAETVCQECGLVVEEDEIDRGPEWRAFDAAEKDQKS-RVGAPTTN 90
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 91 MMHDQGLSTNIGWQDKDAYGKS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 147
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ ++ L GR+ E + + LY A RQ PR++ E
Sbjct: 148 IDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEI 207
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
+V+ K E+ R +I++ L +E+ Y+ RF S+L ++++ + A+
Sbjct: 208 SAVSR-VDKMELTRTYRYIIREL------GLEVKPADPEHYVPRFVSDLDLSDETERMAR 260
Query: 233 EAVQ 236
E ++
Sbjct: 261 ELLE 264
>gi|448345937|ref|ZP_21534826.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445633870|gb|ELY87057.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 326
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 120/245 (48%), Gaps = 26/245 (10%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
+C +C ++ D +T+C++CGLV+E +D EWR F D + RVG P
Sbjct: 30 HCPECG--GRLISDDEHAETVCTDCGLVVEEDEIDRGPEWRAFDAAEKD-EKSRVGAPTT 86
Query: 65 PLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFK 111
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 87 NMMHDQGLSTNIGWQDKDAYGRS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALG 143
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
I M+ LGL +++ A+ IY++ ++ L GR+ E + + LY A RQ PR++ E
Sbjct: 144 EIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDE 203
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
+V+ K E+ R +I++ L +E+ Y+ RF S+L ++++ + A
Sbjct: 204 ISAVSR-VEKMELTRTYRYIIREL------GLEVKPADPEHYVPRFVSDLDLSDETERMA 256
Query: 232 QEAVQ 236
+E ++
Sbjct: 257 RELLE 261
>gi|448336782|ref|ZP_21525873.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445627873|gb|ELY81188.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
Length = 326
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 120/245 (48%), Gaps = 26/245 (10%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
+C +C ++ D +T+C++CGLV+E +D EWR F D + RVG P
Sbjct: 30 HCPECG--GRLISDDEHAETVCTDCGLVVEEDEIDRGPEWRAFDAAEKD-EKSRVGAPTT 86
Query: 65 PLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFK 111
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 87 NMMHDQGLSTNIGWQDKDAYGRS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALG 143
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
I M+ LGL +++ A+ IY++ ++ L GR+ E + + LY A RQ PR++ E
Sbjct: 144 EIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDE 203
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
+V+ K E+ R +I++ L +E+ Y+ RF S+L ++++ + A
Sbjct: 204 ISAVSR-VEKMELTRTYRYIIREL------GLEVKPADPEHYVPRFVSDLDLSDETERMA 256
Query: 232 QEAVQ 236
+E ++
Sbjct: 257 RELLE 261
>gi|110667584|ref|YP_657395.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|385803024|ref|YP_005839424.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|109625331|emb|CAJ51753.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|339728516|emb|CCC39669.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 369
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 125/245 (51%), Gaps = 25/245 (10%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
+C +C+ TE++ D G+T+C++CGLV++ S+D EWR F + D RVG P
Sbjct: 64 HCPECE-STELITDDERGETVCADCGLVVDEDSIDRGPEWRAFDSAERDQ-KSRVGAPTT 121
Query: 65 PLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFK 111
L+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 122 KLMHDKGLSTNIGWQDKDAYGNS--LSSTQRQKMQRLRTWNERFRTRDSK-ERNLKQALG 178
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
I M+ LGL ++++ A+ IY++ D+ L GR+ E I A L+ A R PR++ E
Sbjct: 179 EIDRMASALGLPESVRETASVIYRRALDEDLLPGRSIEGISTAALHAAARMAQVPRSIDE 238
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
V+ + E RA +IV+ L S+E+ ++Y+ RF S+L + + + A
Sbjct: 239 VARVSR-VDEDEFERAYRYIVREL------SLEIQPADPAEYVPRFASDLEVPKETERTA 291
Query: 232 QEAVQ 236
+E ++
Sbjct: 292 RELLE 296
>gi|300711996|ref|YP_003737810.1| transcription factor TFIIB cyclin-like protein [Halalkalicoccus
jeotgali B3]
gi|448295686|ref|ZP_21485750.1| transcription factor TFIIB cyclin-like protein [Halalkalicoccus
jeotgali B3]
gi|299125679|gb|ADJ16018.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
gi|445583785|gb|ELY38114.1| transcription factor TFIIB cyclin-like protein [Halalkalicoccus
jeotgali B3]
Length = 320
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 121/248 (48%), Gaps = 26/248 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +++ D G+T+C++CGLV+ SVD EWR F + D RVG P
Sbjct: 25 CPECS--GQLISDDEHGETVCADCGLVVAEDSVDRGPEWRAFDSREKDQKS-RVGAPTTN 81
Query: 66 LLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 82 TMHDKGLSTNIDWRNKDAYGNS--LGSRQRQKMQRLRKWNERFRTRDSK-ERNLKQALGE 138
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ ++ L GR+ E + A +Y A RQ PR++ E
Sbjct: 139 IDRMASALGLPDNVRETASVIYRRALNEDLLPGRSIEGVATASVYAAARQAGVPRSLDEI 198
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ K E+ R ++V+ L +E+ Y+ RF S L ++++A A+
Sbjct: 199 SEVSR-VEKSEVARTYRYVVREL------GLEVQPADPESYVPRFASGLELSDEAEHRAR 251
Query: 233 EAVQKSED 240
+ ++ +++
Sbjct: 252 QLLRNAKE 259
>gi|448680963|ref|ZP_21691109.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445768021|gb|EMA19108.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
Length = 339
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 120/250 (48%), Gaps = 24/250 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DC +V D S G+T+C CGLV++ +D EWR F ++ D+ RVG P
Sbjct: 30 CPDCG--GSLVTDDSRGETVCESCGLVVDEDEIDHGPEWRAFDSQERDN-KRRVGAPTTE 86
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQA---------RSSHPDRNLIQAFKSI 113
+ GLST I K G S L + K+Q H +RNL QA I
Sbjct: 87 MKHDKGLSTNIGWQDKDAYGNS--LSTRQREKMQRLRTWDERFRTRDHAERNLKQALGEI 144
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M LG+ + ++ A+ IY++ D+ L GR+ E + A LY A RQ N P+T+ +
Sbjct: 145 DRMGSALGVPESARETASVIYRRALDEGMLPGRSIEGMATAALYAAIRQANLPQTLDDMA 204
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
V+ + E RA ++ + L S+++G + YL +F S LG + + A+
Sbjct: 205 VVSR-VDEMEFTRAYRYLNREL------SLQVGPPDPATYLSKFISELGADDALERQARA 257
Query: 234 AVQKSEDLDI 243
++ ++ ++
Sbjct: 258 LIEAGKEANV 267
>gi|448444597|ref|ZP_21589887.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445686010|gb|ELZ38351.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 324
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 117/240 (48%), Gaps = 21/240 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T V A + +C++CGLV+EA +D EWR F ++ D +P R G PL
Sbjct: 45 CPECGGRTRV----DAAERVCADCGLVVEADRIDHGPEWRSFDDD--DTNPKRTGAPLTR 98
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----SSHPDRNLIQAFKSISAMSDRLG 121
GLST I + T + + + Q S+ DRN + A+ I ++ L
Sbjct: 99 SRHDRGLSTEIGRSTKVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGALE 158
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +++D A ++ +D+ LRGR+ E AACLY+ACR + RTV E C+ A T
Sbjct: 159 LPDSVRDTACTLFDSAQDESLLRGRSLEGFAAACLYVACRTADVARTVGEICAEAKATEA 218
Query: 182 KEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNL----GMTNQAVKAAQEAVQK 237
+ + E+G + + ++YL RF S+L + +A + A+ AV++
Sbjct: 219 E-----HRAAFDAMNRELG--LPIAPTGPAEYLPRFASDLDCDAAVERRAGELAERAVEE 271
>gi|397773294|ref|YP_006540840.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448340933|ref|ZP_21529900.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|397682387|gb|AFO56764.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445629271|gb|ELY82562.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 326
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 120/245 (48%), Gaps = 26/245 (10%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
+C +C ++ D +T+C++CGLV+E +D EWR F D + RVG P
Sbjct: 30 HCPECG--GRLISDDEHAETVCTDCGLVVEEDEIDRGPEWRAFDAAEKD-EKSRVGAPTT 86
Query: 65 PLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFK 111
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 87 NMMHDQGLSTNIGWQDKDAYGRS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALG 143
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
I M+ LGL +++ A+ IY++ ++ L GR+ E + + LY A RQ PR++ E
Sbjct: 144 EIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDE 203
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
+V+ K E+ R +I++ L +E+ Y+ RF S+L ++++ + A
Sbjct: 204 ISAVSR-VEKMELTRTYRYIIREL------GLEVKPADPEHYVPRFVSDLDLSDETERMA 256
Query: 232 QEAVQ 236
+E ++
Sbjct: 257 RELLE 261
>gi|448308419|ref|ZP_21498296.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
gi|445593707|gb|ELY47876.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
Length = 321
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 110/240 (45%), Gaps = 19/240 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + ++ + C +CGL+LE ++D EWR F N S RVG P
Sbjct: 27 CPECDS-SSLIRSSDESEISCEDCGLILEEETIDRGPEWRAF-NHSERDSKSRVGAPTTQ 84
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A
Sbjct: 85 TMHDKGLTTTIDWKNKDAYGRSLSSDKRTQMNRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ +Y++ + +RGR+ E + + LY ACR E PR++ E +V
Sbjct: 145 MASALGVPRSVREVASVLYRRALSEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEVAAV 204
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ + EIGR +I + L S+EM + Y+ RFCS L ++ + A E +
Sbjct: 205 SR-VERMEIGRTYRYISQEL------SLEMEPVDPKKYVPRFCSELDLSEEVQAKANEII 257
>gi|448407770|ref|ZP_21573965.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
gi|445675020|gb|ELZ27555.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
Length = 322
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 120/243 (49%), Gaps = 22/243 (9%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGG 61
A++ C +C V D ++G+ C CGLV+E +D EWR F + + RVG
Sbjct: 24 AEASCPECD--GRVTRDEASGEATCDACGLVVETDEIDRGPEWRDFGGDGREQ-KSRVGA 80
Query: 62 PLNPLLSGGGLSTVIA--KPTAGGST---------ELLSGSLGKLQARSSHPDRNLIQAF 110
P+ L+ GLST I A GS E L + + + + +RNL QAF
Sbjct: 81 PMTELMHDKGLSTNIGWQNEDAYGSPLSDRQRTRMERLRTWDERFRTKDAQ-ERNLKQAF 139
Query: 111 KSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVK 170
I M+ L L ++++ A +Y++ ++ L GR+ E + A LY A RQ PR V
Sbjct: 140 GEIDRMASALALPDSVRETAGVLYRRAVEEGLLPGRSIEGMATASLYAATRQHGAPRRVT 199
Query: 171 EFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKA 230
EF V ++K I RA ++L+ E+G ++E + Y+ +F S L ++++A +
Sbjct: 200 EFADVCR-VSQKRIERA----YRYLKTELGLAIE--PEDPAKYVPQFASALDLSDEAERR 252
Query: 231 AQE 233
A E
Sbjct: 253 AGE 255
>gi|399217725|emb|CCF74612.1| unnamed protein product [Babesia microti strain RI]
Length = 333
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 113/236 (47%), Gaps = 13/236 (5%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS---DHDPVRVGGP 62
C DC + V+ DH G+ IC+ CG VLE++ + + EWR F ESS D RVG
Sbjct: 22 CPDCGPMGIVLLDHCEGNQICNNCGRVLESHMISDEQEWRSFNTESSGGAGSDRNRVGEA 81
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGL 122
L+ S V A GG L + + + S+ DR L QAF + ++++ GL
Sbjct: 82 LDHWTE----SQVSATTFLGGGKRL--QQIQESTSVSNQQDRLLRQAFVQLRSIAECFGL 135
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+RA EI K ++ L+GR + A Y+ACR+ + RTVKE T++
Sbjct: 136 QEHTMERAKEIAKDLQLAGHLKGRCNTLNMLAVTYLACREASLFRTVKELIVYDRSLTER 195
Query: 183 EIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKS 238
++ R+ + K L E AS L RFCS L ++ A+ AV+K+
Sbjct: 196 DLARSINKLKKFLPHRGAAFFE----SASQLLDRFCSRLSLSTNLCSVAEHAVEKA 247
>gi|448473771|ref|ZP_21601913.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445819283|gb|EMA69132.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 353
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 123/268 (45%), Gaps = 52/268 (19%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D G+T+C +CGLV+E +D EWR F + S RVG P
Sbjct: 28 CPECS--GQLATDTEHGETVCVDCGLVVEEDEIDRGPEWRAF-DASEKDSKSRVGAPTTN 84
Query: 66 LLSGGGLSTVIA--------KPTAGGST------ELLSGSLG------------------ 93
++ GLST I K +G T + LS ++G
Sbjct: 85 MMHDKGLSTNIGWQDKDAYGKSLSGAPTTNMMHDKGLSTNIGWQDKDAYGKSLSSRQREK 144
Query: 94 ---------KLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLR 144
+ + R S +RNL QA + M+ LGL +++ A+ IY++ D+ L
Sbjct: 145 MQRLRTWNERFRTRDSK-ERNLKQALGEVDRMASALGLPDNVRETASVIYRRALDEDLLP 203
Query: 145 GRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVE 204
GR+ E + A LY A RQ PR++ E +V+ K EI R ++V+ L+ +E
Sbjct: 204 GRSIEGVSTASLYAAARQAGTPRSLDEIAAVSR-VEKDEIARTYRYVVRELK------LE 256
Query: 205 MGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
+ Y+ RF S+LG++++A + A+
Sbjct: 257 IQPADPESYVPRFASDLGLSDEAERRAR 284
>gi|399579012|ref|ZP_10772756.1| transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236038|gb|EJN56978.1| transcription initiation factor IIB [Halogranum salarium B-1]
Length = 319
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 116/242 (47%), Gaps = 22/242 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++V D G++ C ECGLV++ VD EW+ + N + RVG P
Sbjct: 26 CPECD--GKIVQDSEHGESSCEECGLVVDEMQVDRGPEWQAY-NADDRSEKSRVGAPTTQ 82
Query: 66 LLSGGGLSTVIA-KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKSIS 114
L+ GLST I K T G + +LQ + +H +RNL QA I
Sbjct: 83 LMHDKGLSTTIGWKNTDGYGKTIPDRKRARLQRLRTWDERFRTKDAH-ERNLKQALTEIR 141
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL ++ A +Y++ L GR+ E + ACLY A RQ PRT+ F
Sbjct: 142 RMASALGLPEPPRETAGILYRRAVKDNLLPGRSIEGMATACLYAATRQHGSPRTLTTFAD 201
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ + I RA ++ + E+G +E + S Y+ +F S+L ++ +A + A E
Sbjct: 202 VSR-VKRLRIQRAYNYLSR----ELGLQIE--PENPSKYVPQFASSLDVSKEATREAHEL 254
Query: 235 VQ 236
++
Sbjct: 255 LE 256
>gi|162605828|ref|XP_001713429.1| transcription initiation factor IIB [Guillardia theta]
gi|13794361|gb|AAK39738.1|AF083031_95 transcription initiation factor IIB [Guillardia theta]
Length = 325
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 128/244 (52%), Gaps = 28/244 (11%)
Query: 6 CADC--KRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
C +C KR E D+ GD IC CG ++E++ +D SEWRIF++++ ++PVR+G P
Sbjct: 4 CINCGSKRFLE---DYKQGDIICKNCGFIIESHIIDFGSEWRIFSDDNRSNNPVRIGLPE 60
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSH--PDRNLIQAFKSISAMSDRLG 121
NPLL G ST+I+K G + ++ L K Q ++ + ++ L F IS
Sbjct: 61 NPLL-GNSSSTLISKGLKGSNK--INEKLLKAQNQNDNCKSEKYLASVFSIISFFLTNGS 117
Query: 122 LVTTIKDRANEIYKKVED-----------QKPLRGRNQEAIVAACLYIACRQENKPRTVK 170
IK++ E++K D + LR ++ +I+AA ++I C+ E+ PR+ K
Sbjct: 118 FSKLIKEKVQELFKNYYDYLTLKSNGSRIKTTLRKKDTFSIIAASIFIICKNESIPRSFK 177
Query: 171 EFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASD-YLRRFCSNLGMTNQAVK 229
E + KK+IG + K LE +++ SD ++ RFCS LG+++ + K
Sbjct: 178 EISELT-KVKKKDIGNRVRIMEKALEG-----IKISKKRDSDNFISRFCSKLGLSSTSSK 231
Query: 230 AAQE 233
A++
Sbjct: 232 IAEQ 235
>gi|424813973|ref|ZP_18239151.1| transcription initiation factor TFIIB [Candidatus Nanosalina sp.
J07AB43]
gi|339757589|gb|EGQ42846.1| transcription initiation factor TFIIB [Candidatus Nanosalina sp.
J07AB43]
Length = 360
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 121/236 (51%), Gaps = 22/236 (9%)
Query: 18 DHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA 77
D S G+ IC CG V++ +D+++E+R F N R G PL G+ST I
Sbjct: 74 DSSKGELICISCGTVIDEDRIDKSAEYRAF-NAEEKEKKARAGQPLTYTKHDMGVSTEIG 132
Query: 78 KPTAGGSTEL--LSGS-------LGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
K GS EL +SG+ L K R + DRNL A +++M L L ++
Sbjct: 133 K----GSGELYKVSGNKRAQYYRLRKWHKRLTKSKDRNLGFALSELNSMISNLNLPESVH 188
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
+ +Y+K DQ +RGR+ E+I++A +YI R++ PRT+ E S A+G K+EIGRA
Sbjct: 189 EETARLYEKSVDQGLVRGRSMESIISAIIYIVARKQGTPRTLDEI-SDASGIEKREIGRA 247
Query: 188 KEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
++ + L + + DY+ RF L ++ + A++ ++++ + D+
Sbjct: 248 YRYVAREL------GLRILPAKPQDYVPRFAGKLQLSGEVQARARQILKEARERDL 297
>gi|448358672|ref|ZP_21547349.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|445645254|gb|ELY98260.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 329
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 115/241 (47%), Gaps = 26/241 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D +T+C ECGLV+E +D EWR F D RVG P
Sbjct: 34 CPECG--GRLISDDEHAETVCQECGLVVEEDEIDRGPEWRAFDAAEKDQKS-RVGAPTTN 90
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 91 MMHDQGLSTNIGWQDKDAYGKS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 147
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ ++ L GR+ E + + LY A RQ PR++ E
Sbjct: 148 IDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEI 207
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
+V+ K E+ R +I++ L +E+ Y+ RF S+L ++++ + A+
Sbjct: 208 SAVSR-VDKMELTRTYRYIIREL------GLEVKPADPEHYVPRFVSDLDLSDETERMAR 260
Query: 233 E 233
E
Sbjct: 261 E 261
>gi|448472540|ref|ZP_21601164.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445819844|gb|EMA69678.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 323
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 114/233 (48%), Gaps = 22/233 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C V+ D G+++C++CGLV+EA SVD EWR F + D + RVG P
Sbjct: 29 CPECG--GNVINDEEHGESVCADCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTN 85
Query: 66 LLSGGGLSTVIA---KPTAGGS--------TELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
+ GLST I K G S + L + + R S +RNL QA I
Sbjct: 86 TMHDKGLSTNIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSK-ERNLKQALGEID 144
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ GL +++ A+ IY++ D+ L GR+ E + +C+Y A R PR++ E
Sbjct: 145 RMASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIAD 204
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQA 227
V+ K EI R ++V+ L+ +E+ Y+ RF S+L ++ ++
Sbjct: 205 VSR-VEKAEIARTYRYVVRELK------LEVKPADPEQYVPRFASDLELSEES 250
>gi|448445487|ref|ZP_21590385.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445685011|gb|ELZ37373.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 324
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 114/233 (48%), Gaps = 22/233 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C V+ D G+++C++CGLV+EA SVD EWR F + D + RVG P
Sbjct: 30 CPECG--GNVINDEEHGESVCADCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTN 86
Query: 66 LLSGGGLSTVIA---KPTAGGS--------TELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
+ GLST I K G S + L + + R S +RNL QA I
Sbjct: 87 TMHDKGLSTNIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSK-ERNLKQALGEID 145
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ GL +++ A+ IY++ D+ L GR+ E + +C+Y A R PR++ E
Sbjct: 146 RMASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIAD 205
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQA 227
V+ K EI R ++V+ L+ +E+ Y+ RF S+L ++ ++
Sbjct: 206 VSR-VEKAEIARTYRYVVRELK------LEVKPADPEQYVPRFASDLELSEES 251
>gi|448730615|ref|ZP_21712921.1| transcription initiation factor IIB [Halococcus saccharolyticus DSM
5350]
gi|445793284|gb|EMA43867.1| transcription initiation factor IIB [Halococcus saccharolyticus DSM
5350]
Length = 283
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 107/222 (48%), Gaps = 15/222 (6%)
Query: 23 DTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTA- 81
+T C ECGLV+ A +D EWR F E+ R G PL GLST I + T
Sbjct: 20 ETACDECGLVVAADEIDRGPEWRSFERETRK----RTGAPLTRSRHDRGLSTEIGRSTRL 75
Query: 82 GGSTELLSGSLGKLQARS---SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVE 138
G L L + +RS S +RN + AF I LGL +++DRA +++ +
Sbjct: 76 TGRKRRLFARLRRQHSRSRIASKAERNKVYAFTEIRRQVCALGLSDSVRDRACVLFESAQ 135
Query: 139 DQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198
D LRGR+ E AA +Y CR + RT+ E +VA ++ E+ A + + + L
Sbjct: 136 DADLLRGRSLEGFAAATIYAVCRTDGVSRTLAEIVTVAKA-SRDELTAAYDALNRDL--- 191
Query: 199 MGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
+ G I ++YL RF S LG+ + A+E V + D
Sbjct: 192 ---GLPTGPIDPTEYLARFASQLGLPHGVEARARELVAEGRD 230
>gi|448391802|ref|ZP_21566897.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|445665214|gb|ELZ17892.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 323
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 113/243 (46%), Gaps = 20/243 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C VV D +T+C +CGLV+E +D EWR F D + RVG P
Sbjct: 28 CPECG--GRVVSDAEHAETVCEDCGLVVEEDEIDRGPEWRAFDAAEKD-EKSRVGAPTTN 84
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISA 115
++ GLST I LS + R +RNL QA I
Sbjct: 85 MMHDQGLSTNIGWQDKDAYGRALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL +++ A+ IY++ ++ L GR+ E + A LY A RQ PR++ E +V
Sbjct: 145 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISAV 204
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ K E+ R +I++ L +E+ Y+ RF S+L ++++ + A+E +
Sbjct: 205 SR-VEKMELTRTYRYIIREL------GLEVKPADPEHYVPRFVSDLDLSDETERMARELL 257
Query: 236 QKS 238
+ +
Sbjct: 258 ESA 260
>gi|298675089|ref|YP_003726839.1| transcription factor tFIIB cyclin-like protein [Methanohalobium
evestigatum Z-7303]
gi|298288077|gb|ADI74043.1| Transcription factor TFIIB cyclin-related protein [Methanohalobium
evestigatum Z-7303]
Length = 341
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 125/248 (50%), Gaps = 19/248 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + + D+ + +CS+CGLV++A VDE EWR F + RVG P+
Sbjct: 45 CPECGSIN-LEQDYERAELVCSDCGLVVDAELVDEGPEWRAF-DSDQQMKRSRVGAPMTY 102
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFKSISA 115
+ GLST+I + +S L K Q R + +RNL A +
Sbjct: 103 AIHDKGLSTMIDWRNRDSYGQSISSKNRAQLYRLRKWQRRIRIYNAAERNLAFALSELDR 162
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL T+++ A +Y+K D+ +RGR+ E + AA LY ACRQ + PRT+ E V
Sbjct: 163 MASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIGEV 222
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ ++ EIGR FI + L S+++ DY+ RFCS L + ++ E +
Sbjct: 223 SR-VSRIEIGRTYRFISREL------SLKLMPTSPIDYVPRFCSGLKLKSEVQSKGVEIL 275
Query: 236 QKSEDLDI 243
+++ + +I
Sbjct: 276 RQASEKEI 283
>gi|389846997|ref|YP_006349236.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388244303|gb|AFK19249.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 276
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 105/221 (47%), Gaps = 18/221 (8%)
Query: 25 ICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGS 84
+C +CGLVL+ +D EWR F N S RVG P+ + GL+T I
Sbjct: 1 MCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITETMHDRGLTTTIDWKDKDAY 59
Query: 85 TELLSGS-------LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
LS L K Q R D RNL A I M+ LG+ ++++ A+ IY
Sbjct: 60 GRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVASVIY 119
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
++ ++ +RGR+ E + + LY ACRQE PR++ E V+ +KEIGR +I +
Sbjct: 120 RRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVAEVSR-VPQKEIGRTYRYISQE 178
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
L +E+ + ++ RF S L ++ + A E +
Sbjct: 179 L------GLELKPVDPKQFVPRFASALELSEEVQAKATEII 213
>gi|448456468|ref|ZP_21595237.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445811944|gb|EMA61941.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 324
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 114/233 (48%), Gaps = 22/233 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C V+ D G+++C++CGLV+EA SVD EWR F + D + RVG P
Sbjct: 30 CPECG--GNVINDEEHGESVCADCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTN 86
Query: 66 LLSGGGLSTVIA---KPTAGGS--------TELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
+ GLST I K G S + L + + R S +RNL QA I
Sbjct: 87 TMHDKGLSTNIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSK-ERNLKQALGEID 145
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ GL +++ A+ IY++ D+ L GR+ E + +C+Y A R PR++ E
Sbjct: 146 RMASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIAD 205
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQA 227
V+ K EI R ++V+ L+ +E+ Y+ RF S+L ++ ++
Sbjct: 206 VSR-VEKAEIARTYRYVVRELK------LEVKPADPEQYVPRFASDLELSEES 251
>gi|284165712|ref|YP_003403991.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|284015367|gb|ADB61318.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
Length = 323
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 22/244 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C V+ D +T+C +CGLV+E +D EWR F D + RVG P
Sbjct: 28 CPECG--GRVISDAEHAETVCEDCGLVVEEDEIDRGPEWRAFDAAEKD-EKSRVGAPTTN 84
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSL-----------GKLQARSSHPDRNLIQAFKSIS 114
++ GLST I LS + + R S +RNL QA I
Sbjct: 85 MMHDQGLSTNIGWQDKDAYGRALSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGEID 143
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ ++ L GR+ E + A LY A RQ PR++ E +
Sbjct: 144 RMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISA 203
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ K E+ R +I++ L +E+ Y+ RF S+L ++++ + A+E
Sbjct: 204 VSR-VEKMELTRTYRYIIREL------GLEVKPADPEHYVPRFVSDLDLSDETERMAREL 256
Query: 235 VQKS 238
++ +
Sbjct: 257 LESA 260
>gi|329764659|ref|ZP_08256266.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|329138857|gb|EGG43086.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 287
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 114/236 (48%), Gaps = 18/236 (7%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ G+ C +CG V+ D EWR F+ E DP R G P + + GL+T
Sbjct: 1 MLTDNDTGERFCGKCGFVISETLQDSGPEWRSFSKEGG-LDPTRTGAPTSLAIHDRGLAT 59
Query: 75 VIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISAMSDRLGLVT 124
+I S + L+ S+ R + DRNL QA ++ + D+L +
Sbjct: 60 IINPINRDSSGKPLTSSMKSTIERLRTWDSRSKVHASSDRNLRQALSELTRLKDKLAVSD 119
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ ++A IY+K D+ +RGR+ A++A+ LY ACR PRT+K+ N KK+I
Sbjct: 120 AVVEKAAYIYRKALDKGLVRGRSISALIASALYAACRDTETPRTLKDVSDAGN-IKKKDI 178
Query: 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
R + + LE ++M + + R S LG++ + + A + ++ +++
Sbjct: 179 ARCYRILHQELE------LKMPVVDPIQCIARIASKLGISEKTKRYAVKVLKTAQE 228
>gi|118576516|ref|YP_876259.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
gi|118195037|gb|ABK77955.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
Length = 328
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 101/205 (49%), Gaps = 16/205 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C C + ++V D + G+ C+ CG V+ D +EWR F+ + + R G +
Sbjct: 38 CPSCGK-QKIVTDENQGELFCATCGFVITDKLEDMGAEWRSFSGDETSRS--RSGAGTSL 94
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSL-----------GKLQARSSHPDRNLIQAFKSIS 114
+ GLSTVI + + LS S+ + QA SS DRNL QA +
Sbjct: 95 AMHDMGLSTVIGSANKDTTGKPLSASMRTSIERLRTWDSRTQAHSS-ADRNLRQALNEMD 153
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M D+L L + ++A IY+K ++K +RGR+ +VAACLY ACR PRT+ +
Sbjct: 154 KMKDKLALADAVIEKAAYIYRKAMEKKLVRGRSIHGLVAACLYAACRNTETPRTLDDIAK 213
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
N +K++ R I + LE +M
Sbjct: 214 GIN-IRRKDVARCYRLIFRELELKM 237
>gi|300712884|ref|YP_003738696.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
gi|448295398|ref|ZP_21485466.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
gi|299126568|gb|ADJ16905.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
gi|445584335|gb|ELY38658.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
Length = 340
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 112/241 (46%), Gaps = 20/241 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+T C+ECGLV++ +D EWR F + D R G P
Sbjct: 33 CPECG--GRLVNDAEHGETTCAECGLVVKEDEIDHGPEWRAFDSAERDRKK-RTGAPTTK 89
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISA 115
L+ GLS+ I LS + +R + +RNL QA I
Sbjct: 90 LMHDKGLSSQIGWQNKDAYGNALSSRKRQQMSRLRTWDERFRTRNSKERNLKQALAEIER 149
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M LG+ +++ A+ IY++ + L GR+ E + A LY A RQ PR+V+E +V
Sbjct: 150 MGSALGVPEDVRETASVIYRRALSEDLLPGRSIEGVTTAALYAAIRQMGLPRSVEEVGAV 209
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ + E RA +I + L S+E+G YL RF S+L + ++ A+E +
Sbjct: 210 SR-VDEMEFKRAYRYINQEL------SLEVGPPAPDQYLPRFASDLNVNDETEGRARELI 262
Query: 236 Q 236
Q
Sbjct: 263 Q 263
>gi|448468113|ref|ZP_21599744.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
gi|445810856|gb|EMA60870.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
Length = 324
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 114/233 (48%), Gaps = 22/233 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C V+ D G+++C++CGLV+EA SVD EWR F + D + RVG P
Sbjct: 30 CPECG--GNVINDEEHGESVCADCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTN 86
Query: 66 LLSGGGLSTVIA---KPTAGGS--------TELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
+ GLST I K G S + L + + R S +RNL QA I
Sbjct: 87 TMHDKGLSTNIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSK-ERNLKQALGEID 145
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ GL +++ A+ IY++ D+ L GR+ E + +C+Y A R PR++ E
Sbjct: 146 RMASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIAD 205
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQA 227
V+ K EI R ++V+ L+ +E+ Y+ RF S+L ++ ++
Sbjct: 206 VSR-VEKAEIARTYRYVVRELK------LEVKPADPEQYVPRFASDLELSEES 251
>gi|452207622|ref|YP_007487744.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452083722|emb|CCQ37037.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 321
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 111/239 (46%), Gaps = 22/239 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + D G+T+C +CGLV+E +D EWR F + D RVG P
Sbjct: 26 CPECG--GRLAADSEHGETVCRDCGLVVEEDEIDRGPEWRAFDSAEKDQKS-RVGAPTTN 82
Query: 66 LLSGGGLSTVIA-KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKSIS 114
++ GLST I + L S K+Q R S +RNL QA I
Sbjct: 83 MMHDKGLSTNIDWRDQDAYGNSLDSRQRQKMQRLRKWNERFRTRDSK-ERNLKQALGEID 141
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ D L GR+ E + A +Y A RQ PR++ E
Sbjct: 142 RMASALGLPENVRETASVIYRRALDDNLLPGRSIEGVSTASVYAAARQAGVPRSLDEVAG 201
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
V+ K EI R ++V+ L +E+ Y+ RF S+L ++ +A A++
Sbjct: 202 VSR-VEKSEIARTYRYVVREL------GLEVAPADPESYVPRFASDLDLSEEAENRARK 253
>gi|378732425|gb|EHY58884.1| transcription initiation factor TFIIB [Exophiala dermatitidis
NIH/UT8656]
Length = 365
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 99/193 (51%), Gaps = 7/193 (3%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIF-ANESSDHDPVRVGGPLN 64
C DCK++ + + +A DTIC+ CG+VL + SEWR F ++E DP RVG N
Sbjct: 31 CPDCKQVPPDLIEENA-DTICANCGMVLAERLISYESEWRTFNSDEGKGEDPNRVGEADN 89
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGL 122
LL T+I G + + L K QA + D+ L A+ + A ++ L
Sbjct: 90 ELLLTNNAGTMIG--GGGPNVSRETRKLKKAQAMQLENKADKALQAAYAQVEAWGEKAKL 147
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+K A +K+V + LRG+ + I+A CL+IACRQ PR+ E + + KK
Sbjct: 148 TAPVKMAAKMYFKRVYEANALRGKQTDVILAGCLFIACRQLKTPRSFTEIFGLTS-VPKK 206
Query: 183 EIGRAKEFIVKHL 195
EIGRA + + K L
Sbjct: 207 EIGRAYKNLEKFL 219
>gi|390961643|ref|YP_006425477.1| transcription initiation factor IIB [Thermococcus sp. CL1]
gi|390519951|gb|AFL95683.1| transcription initiation factor IIB [Thermococcus sp. CL1]
Length = 298
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 120/235 (51%), Gaps = 18/235 (7%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
++ +D G+ +CS CG V++ VDE EWR F + R G P+ ++ GLS
Sbjct: 9 KLFYDPRRGEIVCSVCGYVVQQNVVDEGPEWRAF-DPDQRAKRARTGAPMTLMIHDKGLS 67
Query: 74 TVI---------AKPTAGGSTELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLV 123
T I + T T++ + + + R + +RNL A + M+ ++ L
Sbjct: 68 TDIDWRDKDIHGNQITGMYRTKMRRLRMWQRRMRINDAAERNLAFALSELDRMAAQMRLP 127
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+K+ A +Y+K +K +RGR+ E +V+A LY ACR E PRT+ E +V+ TKKE
Sbjct: 128 RRVKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIAAVSK-VTKKE 186
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKS 238
IGR+ F+ + G ++ + +Y+ RF L ++ + K A+E ++++
Sbjct: 187 IGRSYRFLAR------GLNLNLRPTSPIEYVDRFGDALNVSARTKKRAKEILREA 235
>gi|71394065|gb|AAZ32104.1| archaeal transcriptional initiation factor TFB [uncultured
euryarchaeote Alv-FOS5]
Length = 474
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 119/243 (48%), Gaps = 19/243 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T + +D+ + +C +CG ++E +D EWR F + R G P+
Sbjct: 177 CPECGS-TNLRWDYEKAELVCLDCGAIIEESLIDFGPEWRAF-DSYQKAKRQRTGSPIKY 234
Query: 66 LLSGGGLSTVIAKPTAGGSTELLS-------GSLGKLQARSS---HPDRNLIQAFKSISA 115
GL T I K LS G L K RSS +RNL A +
Sbjct: 235 TKPNKGLVTEIDKYNRDIRGSKLSPQAASQMGRLRKWHKRSSIASSIERNLTIAMGDLER 294
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
+S LGL + I++ A +Y+K ++ +RGR E++VAA +Y+ CRQ PRT+ E V
Sbjct: 295 ISSYLGLPSNIREAAALLYRKAVEKGLIRGRLIESVVAAVIYMICRQYGIPRTLDEISEV 354
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ G TKKEIGR F+ K L V++ + Y+ RF S LG++ + + A+E +
Sbjct: 355 S-GITKKEIGRTYRFLKKEL------YVDVPLTNPIYYVPRFASALGLSGKVQEKAKEIL 407
Query: 236 QKS 238
++
Sbjct: 408 NEA 410
>gi|433591588|ref|YP_007281084.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|433306368|gb|AGB32180.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
Length = 341
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 117/242 (48%), Gaps = 26/242 (10%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
+C +C +V D +T+C++C LV+E +D EWR F D + RVG P
Sbjct: 46 HCPECG--GRLVSDDGRAETVCTDCSLVVEEDEIDRGPEWRAFDAAEKD-EKSRVGAPTT 102
Query: 65 PLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFK 111
++ GLST I K G S L S K+Q R+S +RNL QA
Sbjct: 103 NMMHDQGLSTNIGWQDKDAYGRS--LSSRQREKMQRLRTWNERFRTRNSK-ERNLKQALG 159
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
I M+ LGL T+++ ++ IY++ ++ L GR+ E + A LY A RQ PR++ E
Sbjct: 160 EIDRMASALGLPDTVRETSSVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDE 219
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
+V+ K EI R ++V+ L +E+ Y+ RF S+L + ++ + A
Sbjct: 220 ISAVSR-VEKAEIARTYRYVVREL------GLEVQPADPESYVPRFASDLDLADETERRA 272
Query: 232 QE 233
+
Sbjct: 273 HD 274
>gi|383624782|ref|ZP_09949188.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
Length = 325
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 114/240 (47%), Gaps = 22/240 (9%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
+C +C +V D +T+C +CGLV+E +D EWR F D + RVG P
Sbjct: 29 HCPECG--GRLVSDAEHAETVCEDCGLVVEEDEIDRGPEWRAFDAAEKD-EKSRVGAPTT 85
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSL-----------GKLQARSSHPDRNLIQAFKSI 113
++ GLST I + LS + + R S +RNL QA I
Sbjct: 86 NMMHDQGLSTNIGWQDKDAYGKALSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGEI 144
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M+ LGL +++ A+ IY++ ++ L GR+ E + A LY A RQ PR++ E
Sbjct: 145 DRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEIS 204
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
+V+ K E+ R ++++ L +E+ Y+ RF S+L ++++ + A+E
Sbjct: 205 AVSR-VDKMELTRTYRYVIREL------GLEVQPADPESYVPRFVSDLDLSDETERMARE 257
>gi|448321877|ref|ZP_21511352.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
gi|445602929|gb|ELY56900.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
Length = 317
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 117/250 (46%), Gaps = 21/250 (8%)
Query: 2 ADSYCADCKRLTEVVFDHS-AGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
A + C++C + V HS G+ IC +CGLV+E +D EWR F N RVG
Sbjct: 21 ATTSCSECG--SSNVLRHSDQGERICEDCGLVVEESMIDSGPEWRAF-NHQERQKKSRVG 77
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAF 110
P + GL+T I LS L K Q R D RNL A
Sbjct: 78 APTTQTIHDKGLTTQIDWKDKDAYGRSLSSEKRSQMNRLRKWQKRIRTKDAGERNLQFAL 137
Query: 111 KSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVK 170
I M+ LG+ + ++ + +Y++ ++ +RGR+ E + A LY CRQE PR+++
Sbjct: 138 SEIDRMASALGVPQSTREVTSVLYRRALEEDLIRGRSIEGVATAALYAGCRQEGLPRSLE 197
Query: 171 EFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKA 230
E V+ + E+ R +I +E+G +E+ I Y+ RFCS L + +
Sbjct: 198 EVTEVSR-IERIEVSRTYRYI----SSELG--LEIRPIDPKQYVPRFCSALDLPQEVEAK 250
Query: 231 AQEAVQKSED 240
A+E + ++ D
Sbjct: 251 AKEIIDETAD 260
>gi|399578525|ref|ZP_10772272.1| transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236411|gb|EJN57348.1| transcription initiation factor IIB [Halogranum salarium B-1]
Length = 319
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 105/224 (46%), Gaps = 18/224 (8%)
Query: 25 ICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGS 84
+C +CGLVL+ ++D EWR F N + RVG P + GL+T I
Sbjct: 44 LCEDCGLVLDEQAIDHGPEWRAF-NATERDSKSRVGAPTTQTMHDKGLTTQIDWKNKDAY 102
Query: 85 TELLSGSLGKLQAR----------SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
LS K +R +RNL A + M+ LG+ + ++ A+ IY
Sbjct: 103 GNSLSSKKRKQMSRLRTWQERVRTKDAGERNLQFALSEMDRMASALGVPRSTREVASVIY 162
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
++ ++ +RGR+ E + CLY ACRQE PR++ E V+ +EIGR ++ K
Sbjct: 163 RRALNEDLIRGRSIEGVATGCLYAACRQEGIPRSLDEVADVSR-VPYQEIGRTYRYVAKE 221
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKS 238
L S+EM + +++ RF S L + + + A E + S
Sbjct: 222 L------SLEMRPVDPKEFVPRFASELDVPEEVEQKANEIIDTS 259
>gi|401403652|ref|XP_003881529.1| At4g37010, related [Neospora caninum Liverpool]
gi|325115942|emb|CBZ51496.1| At4g37010, related [Neospora caninum Liverpool]
Length = 455
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 118/258 (45%), Gaps = 22/258 (8%)
Query: 5 YCADCKRLTE-VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH-----DPVR 58
YC + + +VFD S+GD +C ECGL++E + E EWR F+ E++ D R
Sbjct: 110 YCGPARNGAQTIVFDSSSGDQLCRECGLIVEEKVLSEEQEWRNFSAEAASSSRGGADRNR 169
Query: 59 VGGPLNPLLSGGGLSTVIAKPTAGGS------------TELLSGSLGKLQARSSHPDRNL 106
VG L+ L GG+ T + ++GG +L + L DR L
Sbjct: 170 VGDALDAWLEDGGIGTTMLVASSGGPLAGKAAWSAKRLQQLHEAATSGLGTGVGSGDRQL 229
Query: 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKV-EDQKPLRGRNQEAIVAACLYIACRQENK 165
AF I + + L + +RA EI K + +D LR R+ + A +Y+ACR+
Sbjct: 230 KVAFNYIRLIGEAFALRDNVLERAKEITKDLMQDGAQLRTRSNATTMLAIIYLACREAGV 289
Query: 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTN 225
RTVKE ++KE+G+A I K L G S A+ L R+CS L ++
Sbjct: 290 TRTVKELVVYDRAISEKELGKAINRIKKLLPQRGGVS---SAESATQLLPRYCSRLQLSM 346
Query: 226 QAVKAAQEAVQKSEDLDI 243
A+ +++ + I
Sbjct: 347 HVADVAEHVAKRATQVII 364
>gi|336254131|ref|YP_004597238.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338120|gb|AEH37359.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 325
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 115/242 (47%), Gaps = 22/242 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D +T+C +CGLV+E +D EWR F D + RVG P
Sbjct: 30 CPECG--GRLVSDAEHAETVCEDCGLVVEEDEIDRGPEWRAFDAAEKD-EKSRVGAPTTN 86
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSL-----------GKLQARSSHPDRNLIQAFKSIS 114
++ GLST I + LS + + R S +RNL QA I
Sbjct: 87 MMHDQGLSTNIGWQDKDAYGKALSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGEID 145
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ ++ L GR+ E + A LY A RQ PR++ E +
Sbjct: 146 RMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISA 205
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ K E+ R +I++ L +E+ Y+ RF S+L ++++ + A+E
Sbjct: 206 VSR-VDKMELTRTYRYIIREL------GLEVQPADPESYVPRFVSDLDLSDETERMAREL 258
Query: 235 VQ 236
++
Sbjct: 259 LE 260
>gi|331746825|ref|YP_004422862.1| Transcription initiation factor B [Thermococcus barophilus MP]
gi|315185036|gb|ADT85220.1| Transcription initiation factor B [Thermococcus barophilus MP]
Length = 301
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 122/243 (50%), Gaps = 23/243 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C C +++++D+ G+ C+ CG ++ VD EWR F + S R G P +
Sbjct: 10 CPSCGS-SKLIYDYERGEIFCAVCGSIVTQDIVDLRQEWRAF-DASQREKRSRTGAPESI 67
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSG-------SLGKLQAR---SSHPDRNLIQAFKSISA 115
LL GLST I GS ++G L K Q+R S +RNL A +
Sbjct: 68 LLHDKGLSTDI------GSDRNITGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDR 121
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
++ +L L +++ A +Y++ + +RGR+ E+++AAC+Y ACR PRT+ E +
Sbjct: 122 IASQLKLPRHVEEEAARLYREAIRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIADI 181
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
A KKEI R+ FI ++L + + +DY+ +F LG++ + + A E +
Sbjct: 182 AR-VDKKEIARSFRFIARNLNLTPKKLF----VKPTDYVNKFADELGLSEKVRRRAIELL 236
Query: 236 QKS 238
+++
Sbjct: 237 EEA 239
Score = 43.9 bits (102), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LGL ++ RA E+ ++ ++ G++ +VAA LYIA
Sbjct: 204 PKKLFVKPTDYVNKFADELGLSEKVRRRAIELLEEAYNRGLTSGKSPAGLVAAALYIASL 263
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E + RT +E VA T R KE + K
Sbjct: 264 LEGEKRTQREVAEVARVTEVTVRNRYKELVEK 295
>gi|341582974|ref|YP_004763466.1| transcription initiation factor IIB [Thermococcus sp. 4557]
gi|340810632|gb|AEK73789.1| transcription initiation factor IIB [Thermococcus sp. 4557]
Length = 303
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 125/249 (50%), Gaps = 20/249 (8%)
Query: 1 MAD-SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRV 59
MAD + C C ++ +D G+ +CS CG V++ VDE EWR F + R
Sbjct: 1 MADKNVCPVCGS-DKLFYDPRRGEIVCSVCGYVVQQNVVDEGPEWRAF-DPDQRAKRART 58
Query: 60 GGPLNPLLSGGGLSTVI---------AKPTAGGSTELLSGSLGKLQAR-SSHPDRNLIQA 109
G P+ ++ GLST I + T T++ + + + R + +RNL A
Sbjct: 59 GAPMTLMIHDKGLSTDIDWRDKDIHGNQITGMYRTKMRRLRMWQRRMRINDAAERNLAFA 118
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
+ M+ ++ L +K+ A +Y+K +K +RGR+ E +V+A LY ACR E PRT+
Sbjct: 119 LSELDRMAAQMRLPRRVKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTL 178
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVK 229
E +V+ TKKEIGR+ F+ + G ++ + +Y+ RF L ++ + K
Sbjct: 179 DEIAAVSK-VTKKEIGRSYRFLAR------GLNLNLRPTSPIEYVDRFGDALNVSARTKK 231
Query: 230 AAQEAVQKS 238
A+E + ++
Sbjct: 232 RAKEILHEA 240
>gi|448361954|ref|ZP_21550567.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
gi|445649634|gb|ELZ02571.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
Length = 329
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 118/244 (48%), Gaps = 26/244 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D +T+C +CGLV+E +D EWR F D + RVG P
Sbjct: 34 CPECG--GRLITDDEHAETVCEDCGLVVEEDEIDRGPEWRAFDAAEKD-EKSRVGAPTTN 90
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 91 MMHDQGLSTNIGWQNKDAYGKS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 147
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ ++ L GR+ E + + LY A RQ PR++ E
Sbjct: 148 IDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEI 207
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
+V+ K E+ R +I++ L +E+ Y+ RF S+L ++++ + A+
Sbjct: 208 SAVSR-VDKMELTRTYRYIIREL------GLEVKPADPEHYVPRFVSDLDLSDETERMAR 260
Query: 233 EAVQ 236
E ++
Sbjct: 261 ELLE 264
>gi|52550004|gb|AAU83853.1| transcription initiation factor IIB [uncultured archaeon GZfos34G5]
Length = 306
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 115/235 (48%), Gaps = 19/235 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C V+ D + C++CG+V+ VD EWR + E + +R G P++
Sbjct: 15 CPECGS-KNVITDSRHAELYCADCGIVIAENIVDLGPEWRSYDEEQASKR-IRTGPPMSY 72
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS-SHPDRNLIQAFKSISAMSDRLGLVT 124
+ GL T PT G L +L+ S D+ L A I M+ LGL
Sbjct: 73 RIHDKGLGT----PTPG-----LPARTRRLRGISIDSSDKTLAFALVEIDRMACALGLPN 123
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
IK+ + +Y+K + ++GR+ E +V+A LYI CRQ PRT+KE V+ KK I
Sbjct: 124 NIKEATSVLYRKAMKRGLIKGRSIEELVSAMLYITCRQYGVPRTLKEMAEVSRSPLKK-I 182
Query: 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSE 239
RA F+++ LE +++ + Y+ RFCS LG++ + + A +Q +
Sbjct: 183 RRAYIFLLRRLE------IKLAPADPARYIPRFCSKLGLSAEIREKAMVILQDDD 231
>gi|167045079|gb|ABZ09742.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_APKG8I13]
Length = 304
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 127/249 (51%), Gaps = 21/249 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH-DPVRVGGPLN 64
C C + ++V D+ +G+T CS+CG VL + EWR F + +H D R G P +
Sbjct: 12 CPRCAK-GKLVTDNESGETFCSKCGFVLTEKLQEAGPEWRSFTQD--EHGDRARAGAPTS 68
Query: 65 PLLSGGGLSTVI--AKPTAGGS--TELLSGSLGKLQARSSHP------DRNLIQAFKSIS 114
+ GL+T+I A A G T + ++ +L+ S DRN QAF ++
Sbjct: 69 LTMHDMGLATIINPANKDASGRPLTSTMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELN 128
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
+ D+L + + ++A IY+K D+ +RGR+ A++A+ LY ACR + PR +K+
Sbjct: 129 RLKDKLSISDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTSTPRNLKDVEQ 188
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
AN +K+I R +VK L+ + M + + R S +G+ + + A +
Sbjct: 189 AAN-IKRKDIARCYRLLVKELD------LHMPVTDSVQCVARIASKIGIQEKTKRFATKV 241
Query: 235 VQKSEDLDI 243
++++++ ++
Sbjct: 242 LKRAQENEV 250
>gi|435849538|ref|YP_007311726.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433675746|gb|AGB39936.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 318
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 116/250 (46%), Gaps = 21/250 (8%)
Query: 2 ADSYCADCKRLTEVVFDHS-AGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
A + C +C ++ V HS G+ IC +CGLVLE +D EWR F ++ RVG
Sbjct: 22 APATCPECD--SDNVVQHSDPGERICKDCGLVLEESMIDSGPEWRAFDHQERQQK-SRVG 78
Query: 61 GPLNPLLSGGGLSTVI--AKPTAGG---STELLS--GSLGKLQARSSHPD---RNLIQAF 110
P + GL+T I A G S+E S L K Q R D RNL A
Sbjct: 79 APTTQTMHDKGLTTQIDWKNEDAYGRSISSEKRSQMNRLRKWQTRIRTKDAGERNLQFAL 138
Query: 111 KSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVK 170
I M+ LG+ +++ + IY++ + +RGR+ E + A LY CRQE PR+++
Sbjct: 139 SEIDRMASALGVPRAVREVTSVIYRRALQEDLIRGRSIEGVATAALYAGCRQEGIPRSLE 198
Query: 171 EFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKA 230
E V+ + EI R +I L +E+ I Y+ RF S L + +
Sbjct: 199 EITEVSR-IERIEISRTYRYISNEL------GLELRPIDPKQYVPRFTSKLELPQEVETK 251
Query: 231 AQEAVQKSED 240
A E + ++ D
Sbjct: 252 ANEIIDETAD 261
>gi|448369498|ref|ZP_21556050.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
gi|445650673|gb|ELZ03589.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
Length = 329
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 118/244 (48%), Gaps = 26/244 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D +T+C +CGLV+E +D EWR F D + RVG P
Sbjct: 34 CPECG--GRLIADDEHAETVCEDCGLVVEEDEIDRGPEWRAFDAAEKD-EKSRVGAPTTN 90
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 91 MMHDQGLSTNIGWQDKDAYGKS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 147
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ ++ L GR+ E + + LY A RQ PR++ E
Sbjct: 148 IDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEI 207
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
+V+ K E+ R +I++ L +E+ Y+ RF S+L ++++ + A+
Sbjct: 208 SAVSR-VDKMELTRTYRYIIREL------GLEVKPADPEHYVPRFVSDLDLSDETERMAR 260
Query: 233 EAVQ 236
E ++
Sbjct: 261 ELLE 264
>gi|289580210|ref|YP_003478676.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448281448|ref|ZP_21472754.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|289529763|gb|ADD04114.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445578870|gb|ELY33270.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
Length = 329
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 117/244 (47%), Gaps = 26/244 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D +T+C +CGLV+E +D EWR F D RVG P
Sbjct: 34 CPECG--GRLISDDEHAETVCQDCGLVVEEDEIDRGPEWRAFDAAEKDQ-KSRVGAPTTN 90
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 91 MMHDQGLSTNIGWQDKDAYGKS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 147
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ ++ L GR+ E + + LY A RQ PR++ E
Sbjct: 148 IDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEI 207
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
+V+ K E+ R +I++ L +E+ Y+ RF S+L ++++ + A+
Sbjct: 208 SAVSR-VDKMELTRTYRYIIREL------GLEVKPADPEHYVPRFVSDLDLSDETERMAR 260
Query: 233 EAVQ 236
E ++
Sbjct: 261 ELLE 264
>gi|448626518|ref|ZP_21671297.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445760130|gb|EMA11394.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
Length = 339
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 119/250 (47%), Gaps = 24/250 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DC +V D S G+T+C CGLV++ +D EWR F ++ D+ RVG P
Sbjct: 30 CPDCG--GSLVTDDSRGETVCESCGLVVDEDEIDHGPEWRAFDSQERDN-KRRVGAPTTE 86
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQA---------RSSHPDRNLIQAFKSI 113
+ GLST I K G S L S K+Q H +RNL QA I
Sbjct: 87 MKHDKGLSTNIGWQDKDAYGNS--LSSRQREKMQRLRTWDERFRTRDHAERNLKQALGEI 144
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M LG+ + ++ A+ IY++ D+ L GR+ E + A LY A RQ N P+T+ +
Sbjct: 145 DRMGSALGVPESARETASVIYRRALDEGMLPGRSIEGMATAALYAAVRQANLPQTLDDMA 204
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
V+ + E RA ++ + L S+++G + YL +F S L + + A+
Sbjct: 205 VVSR-VDEMEFTRAYRYLNREL------SLQVGPPDPATYLSKFVSELDADDALERQARA 257
Query: 234 AVQKSEDLDI 243
++ ++ ++
Sbjct: 258 LIEAGKEANV 267
>gi|119719600|ref|YP_920095.1| transcription initiation factor IIB [Thermofilum pendens Hrk 5]
gi|119524720|gb|ABL78092.1| Transcription initiation factor IIB (TFIIB) [Thermofilum pendens
Hrk 5]
Length = 327
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 127/248 (51%), Gaps = 26/248 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T +++D + G+ IC+ CG V+ +D+ +EWR F E + RVG P+
Sbjct: 29 CPNCGS-TRLIYDATRGEIICANCGYVMSEREIDQGAEWRAFTPEEREKRS-RVGAPI-- 84
Query: 66 LLSGGGLSTVIAKPTAGGS------------TELLSGSLGKLQARS-SHPDRNLIQAFKS 112
S G+ +++ GG E+L +++AR+ S +RNL QA
Sbjct: 85 --SRYGVESLVTDIDWGGRDAAGREISLRKRIEMLRLRKWQVRARAQSSMERNLAQAVIE 142
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
+ + +LGL + DRA +IYK D +RGR+ E+++AA +Y ACR+ PRT+ E
Sbjct: 143 LERLGAQLGLPKAVLDRALDIYKSALDSNLVRGRSIESVMAAAVYAACREMRLPRTLDEI 202
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
++ +K++ R +++ S+++ +A+D++ R S L ++ +K A
Sbjct: 203 -ALYTRAGRKDVARCYRLLLRE------ASLKVPLPNAADFVPRIGSLLRLSGATIKRAM 255
Query: 233 EAVQKSED 240
E + ++ +
Sbjct: 256 EIIDQARN 263
>gi|448455066|ref|ZP_21594392.1| Zinc finger TFIIB-type domain protein [Halorubrum lipolyticum DSM
21995]
gi|445814181|gb|EMA64149.1| Zinc finger TFIIB-type domain protein [Halorubrum lipolyticum DSM
21995]
Length = 333
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 120/240 (50%), Gaps = 24/240 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP-VRVGGPLN 64
C +C+ +V D G+T+C++CGLV+E SVD EWR F +SS+ D RVG P
Sbjct: 39 CPECE--GNLVTDTEHGETVCNDCGLVVEQDSVDRGPEWRAF--DSSERDSKSRVGAPTT 94
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLG-----------KLQARSSHPDRNLIQAFKSI 113
++ GLST I + LS + + R S DRNL QA I
Sbjct: 95 NMMHDKGLSTNIGWQDKDAYGKSLSSRQRQRMQRLRTWNERFRTRDSK-DRNLKQALGEI 153
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M+ LGL +++ A+ IY++ + L GR+ E + A LY A RQ+ PR++ EF
Sbjct: 154 DRMASALGLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYAAARQDGNPRSLDEFT 213
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
+V+ K E+ R ++++ L+ +E+ Y+ RF S L ++ + + A+E
Sbjct: 214 AVSR-VDKMELTRTYRYVIRELK------LEIQPADPESYVPRFVSRLDLSEETQRLARE 266
>gi|383625175|ref|ZP_09949581.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
Length = 329
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/251 (30%), Positives = 120/251 (47%), Gaps = 26/251 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D +T+C +CGLV++ +D EWR F D + RVG P
Sbjct: 35 CPECG--GRLVSDAEHAETVCEDCGLVVDEGEIDRGPEWRAFDAAEKD-EKSRVGAPTTN 91
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 92 MMHDQGLSTNIGWQDKDAYGRS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 148
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ ++ L GR+ E + A LY A RQ PR++ E
Sbjct: 149 IDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEI 208
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
+V+ K EI R ++V+ L +E+ Y+ RF S+L + ++ + A+
Sbjct: 209 SAVSR-VEKDEIARTYRYVVREL------GLEVQPADPESYVPRFASDLELPDETERRAR 261
Query: 233 EAVQKSEDLDI 243
++ ++D I
Sbjct: 262 RLLKTAKDEGI 272
>gi|147919688|ref|YP_686567.1| transcription initiation factor IIB [Methanocella arvoryzae MRE50]
gi|110621963|emb|CAJ37241.1| transcription initiation factor IIB [Methanocella arvoryzae MRE50]
Length = 337
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 124/252 (49%), Gaps = 27/252 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRVGG 61
C +C ++V D+ + +C+ECGLV++ +D EWR F DHD RVG
Sbjct: 41 CPECGS-RQLVHDYERAELVCNECGLVVDEDFIDMGPEWRAF-----DHDQRMKRSRVGA 94
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFK 111
P+ + GLST+I + +S L K Q R S+ +RNL A
Sbjct: 95 PMTFTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 154
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
+ M+ LGL I++ + +Y+K + +RGR+ E + AA LY ACRQ PRT+ E
Sbjct: 155 ELDRMASALGLPRNIRETSAVVYRKAVSKNLIRGRSIEGVAAAALYAACRQNGVPRTLDE 214
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
V+ ++KEIGR FI + L +++ DY+ RFCS L + + A
Sbjct: 215 IAEVSR-VSRKEIGRTYRFISREL------GLKLMPTSPIDYVPRFCSGLSLKGEVQSKA 267
Query: 232 QEAVQKSEDLDI 243
E ++++ + ++
Sbjct: 268 VEILRQAAEKEL 279
>gi|126178423|ref|YP_001046388.1| transcription initiation factor IIB [Methanoculleus marisnigri JR1]
gi|189029857|sp|A3CSQ6.1|TF2B_METMJ RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|125861217|gb|ABN56406.1| Transcription initiation factor IIB (TFIIB) [Methanoculleus
marisnigri JR1]
Length = 337
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/254 (31%), Positives = 123/254 (48%), Gaps = 27/254 (10%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRV 59
S C +C ++V D+ + +C CGLVL+ +D EWR F DHD RV
Sbjct: 39 SVCPECGS-RQLVHDYERAELVCQNCGLVLDEEFIDRGPEWRAF-----DHDQRMKRSRV 92
Query: 60 GGPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQA 109
G P+ + GLST+I +S L K Q R S+ +RNL A
Sbjct: 93 GAPMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFA 152
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
+ M+ LGL +++ A +Y+ D+ +RGR+ E + AA LY ACRQ + PRT+
Sbjct: 153 LSELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTL 212
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVK 229
E V+ ++KEIGR FI + L +++ DY+ RFCS L + +
Sbjct: 213 DEIAEVSR-VSRKEIGRTYRFISREL------GLKLLPTSPIDYVPRFCSGLNLKGEVQS 265
Query: 230 AAQEAVQKSEDLDI 243
A E ++++ + ++
Sbjct: 266 RAVEILRQAGEREL 279
>gi|448498359|ref|ZP_21610792.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445698780|gb|ELZ50819.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 317
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 109/225 (48%), Gaps = 18/225 (8%)
Query: 22 GDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA---K 78
G+ I E GL++E +D EWR F N S + RVG P + GL+T I K
Sbjct: 38 GELIHEETGLIVEDEQIDPGPEWRAF-NHSERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 96
Query: 79 PTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRAN 131
G S S L K Q R D RNL A I M+ LG+ ++++ A+
Sbjct: 97 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 156
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
IY++ ++ +RGR+ E + A LY ACR+E PR+++E V+ +KEIGR +I
Sbjct: 157 VIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEISEVSR-VDRKEIGRTYRYI 215
Query: 192 VKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQ 236
+ L +EM + Y+ RF S L ++ + A E ++
Sbjct: 216 SQEL------GLEMRPVDPKKYVPRFSSELELSEEVQSKANEIIE 254
>gi|82617153|emb|CAI64060.1| probable transcription initiation factor IIB [uncultured archaeon]
gi|82617265|emb|CAI64171.1| probable transcription initiation factor IIB [uncultured archaeon]
Length = 306
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 114/232 (49%), Gaps = 19/232 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C V+ D + C++CG+V+ VD EWR + E + +R G P++
Sbjct: 15 CPECGS-KNVITDSRHAELYCADCGVVIAENIVDLGPEWRSYDEEQASKR-IRTGPPMSY 72
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS-SHPDRNLIQAFKSISAMSDRLGLVT 124
+ GL T PT G L +L+ S D+ L A I M+ LGL
Sbjct: 73 RIHDKGLGT----PTPG-----LPARTRRLRGISIDSSDKTLAFALVEIDRMACALGLPN 123
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
IK+ + +Y+K + ++GR+ E +V+A LYI CRQ PRT+KE V+ KK I
Sbjct: 124 NIKEATSVLYRKAMKRGLIKGRSIEELVSAMLYITCRQYGVPRTLKEMAEVSRSPLKK-I 182
Query: 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQ 236
RA F+++ LE +++ + Y+ RFCS LG++ + + A +Q
Sbjct: 183 RRAYIFLLRRLE------IKLAPADPARYIPRFCSKLGLSAEIREKAMVILQ 228
>gi|448348503|ref|ZP_21537352.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|445642870|gb|ELY95932.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
Length = 360
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 125/261 (47%), Gaps = 35/261 (13%)
Query: 2 ADSYCADC-------KRLTE----VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANE 50
A++ C DC +R E ++ D +T+C +CGLV+E +D EWR F
Sbjct: 48 AETVCEDCGLVVXERERCPECGGRLITDDEHAETVCEDCGLVVEEDEIDRGPEWRAFDAA 107
Query: 51 SSDHDPVRVGGPLNPLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------A 97
D + RVG P ++ GLST I K G S L S K+Q
Sbjct: 108 EKD-EKSRVGAPTTNMMHDQGLSTNIGWQDKDAYGKS--LSSRQRQKMQRLRTWNERFRT 164
Query: 98 RSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLY 157
R S +RNL QA I M+ LGL +++ A+ IY++ ++ L GR+ E + + LY
Sbjct: 165 RDSK-ERNLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLY 223
Query: 158 IACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRF 217
+ RQ PR++ E +V+ K E+ R +I++ L +E+ Y+ RF
Sbjct: 224 ASARQAGTPRSLDEISAVSR-VDKMELTRTYRYIIREL------GLEVKPADPEHYVPRF 276
Query: 218 CSNLGMTNQAVKAAQEAVQKS 238
S+L ++++ + A+E ++ +
Sbjct: 277 VSDLDLSDETERMARELLESA 297
>gi|448497537|ref|ZP_21610490.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445699768|gb|ELZ51788.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 340
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 113/237 (47%), Gaps = 17/237 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T V + +C++CGLV+EA +D EWR F ++ D +P R G PL
Sbjct: 61 CPECGGRTRV----DGAERVCADCGLVVEADRIDHGPEWRSFDDD--DTNPKRTGAPLTR 114
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----SSHPDRNLIQAFKSISAMSDRLG 121
GLST I + T + + + Q S+ DRN + A+ I ++ L
Sbjct: 115 SRHDRGLSTEIGRSTKVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGALE 174
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +++D A ++ +D+ LRGR+ E AAC+Y+ACR + RTV E C+ A T
Sbjct: 175 LPDSVRDAACALFDSAQDESLLRGRSLEGFAAACVYVACRTADVARTVGEVCAEAKATED 234
Query: 182 KEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKS 238
+ + E+G + + ++YL RF S+LG + A E +++
Sbjct: 235 EH-----RAAFDAMNRELG--LPIAPSGPAEYLPRFASDLGCDPAVERRAGELAERA 284
>gi|268322998|emb|CBH36586.1| probable transcription initiation factor IIB [uncultured archaeon]
Length = 302
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 115/235 (48%), Gaps = 19/235 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C V+ D + C++CG+V+ VD EWR + E + +R G P++
Sbjct: 11 CPECGS-KNVITDSRHAELYCADCGVVIAENIVDLGPEWRSYDEEQASKR-IRTGPPMSY 68
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS-SHPDRNLIQAFKSISAMSDRLGLVT 124
+ GL T PT G L +L+ S D+ L A I M+ LGL
Sbjct: 69 RIHDKGLGT----PTPG-----LPARTRRLRGISIDSSDKTLAFALVEIDRMACALGLPN 119
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
IK+ + +Y+K + ++GR+ E +V+A LYI CRQ PRT+KE V+ KK I
Sbjct: 120 NIKEATSVLYRKAMKRGLIKGRSIEELVSAMLYITCRQYGVPRTLKEMAEVSRSPLKK-I 178
Query: 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSE 239
RA F+++ LE +++ + Y+ RFCS LG++ + + A +Q +
Sbjct: 179 RRAYIFLLRRLE------IKLAPADPARYIPRFCSKLGLSAEIREKAMVILQDDD 227
>gi|282165287|ref|YP_003357672.1| transcription initiation factor IIB [Methanocella paludicola SANAE]
gi|282157601|dbj|BAI62689.1| transcription initiation factor IIB [Methanocella paludicola SANAE]
Length = 336
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 124/252 (49%), Gaps = 27/252 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRVGG 61
C +C ++V D+ + +C+ECGLV++ +D EWR F DHD RVG
Sbjct: 40 CPECGS-RQLVHDYERAELVCNECGLVVDEDFIDMGPEWRAF-----DHDQRMKRSRVGA 93
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFK 111
P+ + GLST+I + +S L K Q R S+ +RNL A
Sbjct: 94 PMTFTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 153
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
+ M+ LGL I++ + +Y+K + +RGR+ E + AA LY ACRQ PRT+ E
Sbjct: 154 ELDRMASALGLPRNIRETSAVVYRKAVTKNLIRGRSIEGVAAAALYAACRQNGVPRTLDE 213
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
V+ ++KEIGR FI + L +++ DY+ RFCS L + + A
Sbjct: 214 IAEVSR-VSRKEIGRTYRFISREL------GLKLMPTSPIDYVPRFCSGLSLKGEVQSRA 266
Query: 232 QEAVQKSEDLDI 243
E ++++ + ++
Sbjct: 267 VEILRQAAEKEL 278
>gi|448482042|ref|ZP_21605256.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
gi|445821444|gb|EMA71235.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
Length = 317
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 109/225 (48%), Gaps = 18/225 (8%)
Query: 22 GDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA---K 78
G+ I E G+++E +D EWR F N S + RVG P + GL+T I K
Sbjct: 38 GELIHEETGMIIEDEQIDPGPEWRAF-NHSERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 96
Query: 79 PTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRAN 131
G S S L K Q R D RNL A I M+ LG+ ++++ A+
Sbjct: 97 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 156
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
IY++ ++ +RGR+ E + A LY ACR+E PR+++E V+ +KEIGR +I
Sbjct: 157 VIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEISEVSR-VDRKEIGRTYRYI 215
Query: 192 VKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQ 236
+ L +EM + Y+ RF S L ++ + A E ++
Sbjct: 216 SQEL------GLEMRPVDPKKYVPRFSSELELSEEVQSKANEIIE 254
>gi|397779601|ref|YP_006544074.1| transcription initiation factor IIB [Methanoculleus bourgensis MS2]
gi|396938103|emb|CCJ35358.1| Transcription initiation factor IIB Short=TFIIB [Methanoculleus
bourgensis MS2]
Length = 337
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/254 (31%), Positives = 123/254 (48%), Gaps = 27/254 (10%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRV 59
S C +C ++V D+ + +C CGLVL+ +D EWR F DHD RV
Sbjct: 39 SVCPECGS-RQLVHDYERAELVCQSCGLVLDEEFIDRGPEWRAF-----DHDQRMKRSRV 92
Query: 60 GGPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQA 109
G P+ + GLST+I +S L K Q R S+ +RNL A
Sbjct: 93 GAPMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFA 152
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
+ M+ LGL +++ A +Y+ D+ +RGR+ E + AA LY ACRQ + PRT+
Sbjct: 153 LSELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTL 212
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVK 229
E V+ ++KEIGR FI + L +++ DY+ RFCS L + +
Sbjct: 213 DEVAEVSR-VSRKEIGRTYRFISREL------GLKLLPTSPIDYVPRFCSGLNLKGEVQS 265
Query: 230 AAQEAVQKSEDLDI 243
A E ++++ + ++
Sbjct: 266 RAVEILRQAGEREL 279
>gi|322371186|ref|ZP_08045738.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
gi|320549176|gb|EFW90838.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
Length = 357
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 122/249 (48%), Gaps = 28/249 (11%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVG 60
AD C +C +V D +T+CS+CGLV+EA +D EWR F ++S+ D RVG
Sbjct: 47 ADHRCPECG--GSLVTDSEHAETVCSQCGLVVEADGIDHGPEWRAF--DASERDSKSRVG 102
Query: 61 GPLNPLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLI 107
P ++ GLS+ I K G S L S K+Q R S +RNL
Sbjct: 103 MPTTKMMHDKGLSSNIGWQDKDAYGRS--LSSRQRQKMQRLRTWDERFRTRDSK-ERNLK 159
Query: 108 QAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPR 167
QA I M+ LGL +++ A+ IY++ ++ L GR+ E + A LY A RQ PR
Sbjct: 160 QALGEIDRMASALGLPKNVRETASVIYRRALNEDLLPGRSIEGVATASLYAAARQSGVPR 219
Query: 168 TVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQA 227
T+ E +V+ E R +IV+ E+G V+ YL RF S L +T++
Sbjct: 220 TMDEVTTVSR-IDGMEFKRTYRYIVR----ELGLGVKPAD--PEQYLSRFESELDLTHET 272
Query: 228 VKAAQEAVQ 236
+ A + ++
Sbjct: 273 KRRAHDLLK 281
>gi|345005621|ref|YP_004808474.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344321247|gb|AEN06101.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 324
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 118/241 (48%), Gaps = 22/241 (9%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
S C +C +V+ D G+T C ECGLVL+ S+D EWR F E D + RVG P
Sbjct: 26 SSCPECD--GQVIRDDEHGETTCEECGLVLDDVSIDRGPEWRTFDGEEKD-EKSRVGAPT 82
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSG-SLGKLQ----------ARSSHPDRNLIQAFKS 112
L+ GLST I + +S +LQ + +H +RNL QAF
Sbjct: 83 TQLMHDKGLSTTIGWQNKDAYGQAVSNRKRARLQRLRTWDERFRTKDAH-ERNLKQAFGE 141
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
IS M+ L + ++ A +Y++ D+ L GR+ E + A LY A RQ PR + EF
Sbjct: 142 ISRMASALDMPEPARETAGVLYRRAVDEDLLPGRSIEGMATAALYAAARQHGTPRPLSEF 201
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ K I RA ++ + L S+++ +Y+ +F S L ++++A + A+
Sbjct: 202 AEVSR-VEKIRIQRAYRYLSREL------SLQIEPADPLEYVPQFASALDVSDEATRQAR 254
Query: 233 E 233
+
Sbjct: 255 D 255
>gi|289937651|ref|YP_003482253.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|448283863|ref|ZP_21475128.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|289533342|gb|ADD07691.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445571958|gb|ELY26500.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
Length = 321
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 109/240 (45%), Gaps = 19/240 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T + + C +CGL+LE ++D EWR F N + RVG P
Sbjct: 27 CPECDSTT-LARSADGSEISCEDCGLILEEEAIDRGPEWRAF-NAAERDSKSRVGAPTTQ 84
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A
Sbjct: 85 TMHDKGLTTTIDWKNQDAYGRSLSSEKRSQMNRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ +G+ ++++ A+ +Y++ ++ +RGR+ E + + LY ACR E PR++ E +V
Sbjct: 145 MASAMGVPRSVREVASVLYRRALEEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEIAAV 204
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ + EIGR +I K L +EM + Y+ RFCS L + ++ A E +
Sbjct: 205 SR-VERMEIGRTYRYISKEL------GLEMQPVDPKKYVPRFCSELELPDEVQSKANEII 257
>gi|448419967|ref|ZP_21580777.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445674135|gb|ELZ26680.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 348
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 119/246 (48%), Gaps = 25/246 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T++ D G+T+C CGLV++ +VD EWR F ++ D RVG P
Sbjct: 43 CPECG-STDLATDEGRGETVCENCGLVVDEDAVDRGPEWRAFDSKEKDQ-KSRVGAPTTN 100
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K++ R S +RNL QA
Sbjct: 101 MMHDKGLSTNIGWQDKDAYGNS--LSSNQRQKMKRLRTWNERFRTRDSK-ERNLKQALGE 157
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ ++ IY++ + L GR+ E I A L+ A R PR++ E
Sbjct: 158 IDRMASALGLPDNVRETSSVIYRRALEDDLLPGRSIEGIATASLHAAARMAQVPRSLDEV 217
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ + E RA +IV+ L S+E+ +YL RF S++ + + + A+
Sbjct: 218 ARVSR-VDEDEFERAYRYIVREL------SLEIKPADPVEYLPRFASDVEVPKETERTAR 270
Query: 233 EAVQKS 238
E ++ +
Sbjct: 271 ELLENA 276
>gi|383319295|ref|YP_005380136.1| transcription initiation factor TFIIB [Methanocella conradii HZ254]
gi|379320665|gb|AFC99617.1| Transcription initiation factor TFIIB [Methanocella conradii HZ254]
Length = 337
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 124/252 (49%), Gaps = 27/252 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRVGG 61
C +C ++V D+ + +C+ECGLV++ +D EWR F DHD RVG
Sbjct: 41 CPECGS-RQLVHDYERAELVCNECGLVVDEDFIDMGPEWRAF-----DHDQRMKRSRVGA 94
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFK 111
P+ + GLST+I + +S L K Q R S+ +RNL A
Sbjct: 95 PMTFTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 154
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
+ M+ LGL I++ + +Y+K + +RGR+ E + AA LY ACRQ PRT+ E
Sbjct: 155 ELDRMASALGLPRNIRETSAVVYRKAVTKNLIRGRSIEGVAAAALYAACRQNGVPRTLDE 214
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
V+ ++KEIGR FI + L +++ DY+ RFCS L + + A
Sbjct: 215 IAEVSR-VSRKEIGRTYRFISREL------GLKLMPTSPIDYVPRFCSGLNLKGEVQSRA 267
Query: 232 QEAVQKSEDLDI 243
E ++++ + ++
Sbjct: 268 VEILRQAAEKEL 279
>gi|336254668|ref|YP_004597775.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338657|gb|AEH37896.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 325
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 121/251 (48%), Gaps = 26/251 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D +T+C +CGLV++ +D EWR F D + RVG P
Sbjct: 31 CPECG--GRLVSDAEHAETVCDDCGLVVDEGEIDRGPEWRAFDAAEKD-EKSRVGAPTTN 87
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 88 MMHDQGLSTNIGWQDKDAYGRS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 144
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ ++ L GR+ E + A LY A RQ PR++ E
Sbjct: 145 IDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEI 204
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
+V+ K EI R ++++ L +E+ Y+ RF S+L + ++ + A+
Sbjct: 205 DAVSR-VEKDEIARTYRYVIREL------GLEVQPADPESYVPRFASDLDLPDETERRAR 257
Query: 233 EAVQKSEDLDI 243
+ ++ ++D I
Sbjct: 258 QLLKTAKDSGI 268
>gi|257076877|ref|ZP_05571238.1| transcription initiation factor IIB [Ferroplasma acidarmanus fer1]
Length = 305
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 126/241 (52%), Gaps = 19/241 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + +V D+ G+ C +CG+V+E +D+ EWR F +E D R G P++
Sbjct: 9 CPECGSI-HLVKDYDRGELTCYDCGIVIEDSLIDQGPEWRAFDSEQ-DGKRSRTGSPMSF 66
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSISA 115
L GL+T I+ K G + S + K R S+ +RNL A + ++
Sbjct: 67 LSHDKGLATEISWSNKDYYGKRIPHKNRSQIYRVRKWHQRIRVSNAAERNLALALQVLNE 126
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
+LG+ IK+ A IY+K ++ +RGR+ E+IV A +Y +CR N PRT+ E V
Sbjct: 127 DGAKLGIPKDIKESAALIYRKAVEKNLIRGRSIESIVCASIYASCRMINIPRTLDEISKV 186
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ KK+IG+A +HL E+ +++ T ++ Y+ +FC+ L + Q + ++ +
Sbjct: 187 SE-VNKKKIGKA----YRHLAKELALNLQPTTPYS--YVSQFCNKLDLDKQVIMDSEHII 239
Query: 236 Q 236
+
Sbjct: 240 R 240
>gi|340344812|ref|ZP_08667944.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339519953|gb|EGP93676.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 309
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 113/236 (47%), Gaps = 18/236 (7%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ G+ C +CG V+ D EWR F+ E DP R G P + + GL+T
Sbjct: 24 MMTDNVTGERFCGKCGYVITEILSDSGPEWRSFSKEGG-TDPTRTGAPTSLTIHDRGLAT 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISAMSDRLGLVT 124
+I S + L+ S+ R DRNL QA +S + D+L L
Sbjct: 83 IINPINRDSSGKPLTSSMKSTIERLRTWDSRSKVHESADRNLRQALSELSRLKDKLSLSD 142
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ ++A IY+K ++ +RGR+ A++A+ LY ACR PRT+K+ N KK+I
Sbjct: 143 AVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDVSDAGN-IKKKDI 201
Query: 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
R + + L+ ++M + + R S LG++ + + A + ++ +++
Sbjct: 202 ARCYRLLHRELD------LKMPVVDPIQCVARIASKLGISEKTKRFAVKVLKTAQE 251
>gi|222478511|ref|YP_002564748.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222451413|gb|ACM55678.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 330
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 112/237 (47%), Gaps = 17/237 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T V A + +C++CGLV+EA +D EWR F ++ D +P R G PL
Sbjct: 51 CPECGGRTRV----DAAERVCTDCGLVVEADRIDHGPEWRSFDDD--DTNPKRTGAPLTR 104
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----SSHPDRNLIQAFKSISAMSDRLG 121
GLST I + T + + + Q S+ DRN + A+ I ++ L
Sbjct: 105 SRHDRGLSTEIGRSTKVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGALE 164
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +++D A ++ +D+ LRGR+ E AAC+Y+ACR + RTV E C+ A T
Sbjct: 165 LPDSVRDTACTLFASAQDESLLRGRSLEGFAAACVYVACRTADVARTVGEICAEAKATEA 224
Query: 182 KEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKS 238
+ + E+G + + ++YL RF S L + A E +++
Sbjct: 225 EH-----RAAFDAMNRELG--LPIAPTGPAEYLPRFASELDCDADVERRAGELAKRA 274
>gi|448434664|ref|ZP_21586438.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|448531800|ref|ZP_21621088.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445684660|gb|ELZ37033.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|445707005|gb|ELZ58873.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 317
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 109/225 (48%), Gaps = 18/225 (8%)
Query: 22 GDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA---K 78
G+ I E GLV+E +D EWR F N + + RVG P + GL+T I K
Sbjct: 38 GELIHEETGLVIEDEQIDPGPEWRAF-NHNERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 96
Query: 79 PTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRAN 131
G S S L K Q R D RNL A I M+ LG+ ++++ A+
Sbjct: 97 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 156
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
IY++ ++ +RGR+ E + A LY ACR+E PR+++E V+ +KEIGR +I
Sbjct: 157 VIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEISEVSR-VDRKEIGRTYRYI 215
Query: 192 VKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQ 236
+ L +EM + Y+ RF S L ++ + A E ++
Sbjct: 216 SQEL------GLEMRPVDPKKYVPRFSSELELSEEVQSKANEIIE 254
>gi|448305704|ref|ZP_21495633.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
gi|445588162|gb|ELY42408.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
Length = 325
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 116/240 (48%), Gaps = 26/240 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D +T+C +CGLV++ +D EWR F + S + RVG P
Sbjct: 31 CPECG--GRLVSDTEHAETVCDDCGLVVDEGEIDRGPEWRAF-DASEKDEKSRVGAPTTN 87
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 88 MMHDQGLSTNIGWQNKDAYGKS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 144
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ ++ L GR+ E + + LY A RQ PR++ E
Sbjct: 145 IDRMASALGLPKNVRETASVIYRRALEEDLLPGRSIEGVATSALYAAARQAGTPRSLDEI 204
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
+V+ K EI R ++++ L +E+ Y+ RF S+L ++++ + A+
Sbjct: 205 AAVSR-VEKDEIARTYRYVIREL------GLEVQPADPESYVPRFASDLDLSDETERRAR 257
>gi|448345333|ref|ZP_21534230.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445635331|gb|ELY88501.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 329
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 114/234 (48%), Gaps = 26/234 (11%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D +T+C++CGLV+E +D EWR F D + RVG P
Sbjct: 35 CPECN--GRLVADDEHAETVCADCGLVVEEGEIDRGPEWRAFDAAEKD-EKSRVGAPTTN 91
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R+S +RNL QA
Sbjct: 92 MMHDQGLSTNIGWQDKDAYGKS--LSSRQREKMQRLRTWNERFRTRNSR-ERNLKQALGE 148
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ + + L GR+ E + + LY A RQ PR++ E
Sbjct: 149 IDRMASALGLPDNVRETASVIYRRALEDELLPGRSIEGVATSSLYAAARQAGTPRSLDEI 208
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQ 226
+V+ K E+ R ++V+ L +E+ Y+ RF S+L ++++
Sbjct: 209 SAVSR-VDKAEVARTYRYVVREL------GLEVQPADPVSYVPRFASDLDLSDE 255
>gi|435846710|ref|YP_007308960.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433672978|gb|AGB37170.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 325
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 116/241 (48%), Gaps = 26/241 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D +T+C +CGLV+E +D EWR F D + RVG P
Sbjct: 30 CPECG--GRLISDTEHAETVCQDCGLVVEEDEIDRGPEWRAFDAAEKD-EKSRVGAPTTN 86
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 87 MMHDQGLSTNIGWQDKDAYGRS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 143
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ ++ L GR+ E + + LY A RQ PR++ E
Sbjct: 144 IDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEI 203
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
+V+ K E+ R +I++ L +E+ Y+ RF S+L ++++ + A+
Sbjct: 204 SAVSR-VDKMELTRTYRYIIREL------GLEVKPADPEHYVPRFVSDLDLSDETERMAR 256
Query: 233 E 233
E
Sbjct: 257 E 257
>gi|448684801|ref|ZP_21692888.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|445782732|gb|EMA33573.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 339
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 119/250 (47%), Gaps = 24/250 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DC +V D S G+T+C CGLV++ +D EWR F ++ D+ RVG P
Sbjct: 30 CPDCG--GSLVTDDSRGETVCESCGLVVDEDEIDHGPEWRAFDSQERDN-KRRVGAPTTE 86
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQA---------RSSHPDRNLIQAFKSI 113
+ GLST I K G S L + K+Q H +RNL QA I
Sbjct: 87 MKHDKGLSTNIGWQNKDAYGNS--LSTRQREKMQRLRTWDERFRTRDHAERNLKQALGEI 144
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M LG+ + ++ A+ IY++ D+ L GR+ E + A LY A RQ N P+T+ +
Sbjct: 145 DRMGSALGVPESARETASVIYRRALDEGMLPGRSIEGMATAALYAAVRQANLPQTLDDMA 204
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
V+ + E RA ++ + L S+++G + YL +F S L + + A+
Sbjct: 205 VVSR-VDEMEFTRAYRYLNREL------SLQVGPPDPATYLSKFVSELDADDALERQARA 257
Query: 234 AVQKSEDLDI 243
++ ++ ++
Sbjct: 258 LIEAGKEANV 267
>gi|448321090|ref|ZP_21510571.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
gi|445604490|gb|ELY58438.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
Length = 324
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 116/236 (49%), Gaps = 24/236 (10%)
Query: 18 DHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA 77
D +T+C +CGLV++ +D EWR F + D + RVG P ++ GLST I
Sbjct: 40 DSEHAETVCQDCGLVVDEGEIDRGPEWRAFDSSEKD-EKSRVGAPTTNMMHDQGLSTNIG 98
Query: 78 ---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKSISAMSDRLGLVT 124
K G S L S K+Q R S +RNL QA I M+ LGL
Sbjct: 99 WQDKDAYGRS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGEIDRMASALGLPE 155
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+++ A+ IY++ ++ L GR+ E + + LY A RQ PR++ E +V+ K EI
Sbjct: 156 NVRETASVIYRRALEEDLLPGRSIEGVATSALYAAARQAGTPRSLDEIAAVSR-VEKDEI 214
Query: 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
R ++++ L +E+ Y+ RF S L ++++ + A++ +Q +++
Sbjct: 215 ARTYRYVIREL------GLEVQPADPESYVPRFASELELSDETERRARQLLQTAKE 264
>gi|307354313|ref|YP_003895364.1| transcription factor TFIIB cyclin-like protein [Methanoplanus
petrolearius DSM 11571]
gi|307157546|gb|ADN36926.1| Transcription factor TFIIB cyclin-related protein [Methanoplanus
petrolearius DSM 11571]
Length = 335
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 122/254 (48%), Gaps = 27/254 (10%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRV 59
+ C +C +++ D+ + C CGLVLE +D EWR F DHD RV
Sbjct: 37 TVCPECGS-RQLIHDYERAELTCQNCGLVLEEEFIDRGPEWRAF-----DHDQRMKRSRV 90
Query: 60 GGPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQA 109
G P+ + GLST+I +S L K Q R S+ +RNL A
Sbjct: 91 GAPMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFA 150
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
+ M+ LGL +++ A +Y+ D+ +RGR+ E + AA LY ACRQ + PRT+
Sbjct: 151 LSELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTL 210
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVK 229
E V+ ++KEIGR FI + L +++ DY+ RFCS L + +
Sbjct: 211 DEIAEVSR-VSRKEIGRTYRFISREL------GLKLLPTSPIDYVPRFCSGLNLKGEVQS 263
Query: 230 AAQEAVQKSEDLDI 243
A E ++++ + ++
Sbjct: 264 RAVEILRQAGEREL 277
>gi|448665373|ref|ZP_21684648.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|445773054|gb|EMA24088.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 339
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 119/250 (47%), Gaps = 24/250 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DC +V D S G+T+C CGLV++ +D EWR F ++ D+ RVG P
Sbjct: 30 CPDCG--GSLVTDDSRGETVCESCGLVVDEDEIDHGPEWRAFDSQERDN-KRRVGAPTTE 86
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQA---------RSSHPDRNLIQAFKSI 113
+ GLST I K G S L + K+Q H +RNL QA I
Sbjct: 87 MKHDKGLSTNIGWQNKDAYGNS--LSTRQREKMQRLRTWDERFRTRDHAERNLKQALGEI 144
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M LG+ + ++ A+ IY++ D+ L GR+ E + A LY A RQ N P+T+ +
Sbjct: 145 DRMGSALGVPESARETASVIYRRALDEGMLPGRSIEGMATAALYAAIRQSNLPQTLDDMA 204
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
V+ + E RA ++ + L S+++G + YL +F S L + + A+
Sbjct: 205 VVSR-VDEMEFTRAYRYLNREL------SLQVGPPDPATYLSKFISELDADDALERQARA 257
Query: 234 AVQKSEDLDI 243
++ ++ ++
Sbjct: 258 LIEAGKEANV 267
>gi|448300614|ref|ZP_21490613.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445585433|gb|ELY39728.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 323
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 118/244 (48%), Gaps = 26/244 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C V+ D +T+C +CGLV+E +D EWR F D RVG P
Sbjct: 28 CPECG--GRVLSDAEHAETVCEDCGLVVEEDEIDRGPEWRAFDAAEKDKKS-RVGAPTTN 84
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G + L S K+Q R S +RNL QA
Sbjct: 85 MMHDQGLSTNIGWQDKDAYGRA--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 141
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ ++ L GR+ E + A LY + RQ + PR++ E
Sbjct: 142 IDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYASARQASTPRSLDEI 201
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
+V+ K E+ R +I++ L +E+ Y+ RF S+L ++++ + A+
Sbjct: 202 SAVSR-VEKMELTRTYRYIIREL------GLEVKPADPEQYVPRFVSDLDLSDETERMAR 254
Query: 233 EAVQ 236
E ++
Sbjct: 255 ELLE 258
>gi|222478746|ref|YP_002564983.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222451648|gb|ACM55913.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 333
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 108/225 (48%), Gaps = 18/225 (8%)
Query: 22 GDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA---K 78
G+ I E GL++E +D EWR F N S RVG P + GL+T I K
Sbjct: 54 GELIHEETGLIVEEEQIDPGPEWRAF-NHSERQSKSRVGAPTTKTMHDKGLTTTIDWKDK 112
Query: 79 PTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRAN 131
G S S L K Q R D RNL A I M+ LG+ ++++ A+
Sbjct: 113 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 172
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
IY++ ++ +RGR+ E + A LY ACR+E PR+++E V+ +KEIGR +I
Sbjct: 173 VIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEISDVSR-VERKEIGRTYRYI 231
Query: 192 VKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQ 236
+ L +EM + Y+ RF S L ++ + A E ++
Sbjct: 232 SQEL------GLEMRPVDPKKYVPRFSSELELSEEVQSKANEIIE 270
>gi|383625085|ref|ZP_09949491.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
gi|448697538|ref|ZP_21698578.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
gi|445781491|gb|EMA32347.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
Length = 327
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 112/241 (46%), Gaps = 21/241 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + D S G+ +C ECGLV++A +D EWR F +E RVG P+
Sbjct: 29 CPECS--GRLRHDVSHGEHVCVECGLVVDADEIDHGPEWRSFDDEGDAR--TRVGAPITE 84
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
GLST I LS S L R + D RNL AF +
Sbjct: 85 RRHDKGLSTTIGWEDRDAYGNDLSASKRTRLRRLRTWNERFTSKDARERNLKHAFGELER 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL ++ A IY++ ++ L GR+ EA+ A LY A RQ PRT F SV
Sbjct: 145 MASALGLPDPCRETAAVIYRRAVEEDLLPGRSIEAMATASLYAAARQHGTPRTFVAFDSV 204
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ + + RA ++ L+ +E+ YLR F S+LG+T++ + A+E +
Sbjct: 205 SR-VDDQPVKRAYRYLSGELD------LEIAPPDPEQYLRPFASDLGVTDETERLAREIL 257
Query: 236 Q 236
+
Sbjct: 258 E 258
>gi|448532924|ref|ZP_21621344.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445706158|gb|ELZ58043.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 339
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 106/221 (47%), Gaps = 17/221 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T V + +C +CGLV+EA +D EWR F ++ D +P R G PL
Sbjct: 60 CPECGGRTRV----EGAERVCGDCGLVVEADRIDHGPEWRSFDDD--DTNPKRTGAPLTR 113
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----SSHPDRNLIQAFKSISAMSDRLG 121
GLST I + T + + + Q S+ DRN + A+ I ++ L
Sbjct: 114 SRHDRGLSTEIGRSTKVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGVLE 173
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +++D A ++ +++ LRGR+ E AAC+Y+ACR + RTV E C A T
Sbjct: 174 LPDSVRDTACSLFDSAQEESLLRGRSLEGFAAACVYVACRTADVARTVGEVCDEAKATED 233
Query: 182 KEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLG 222
+ + + E+G + + S+YL RF S+LG
Sbjct: 234 E-----HQAAFDAMNRELG--LPIAPAGPSEYLPRFASDLG 267
>gi|448301306|ref|ZP_21491299.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
gi|445584042|gb|ELY38366.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
Length = 325
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 116/240 (48%), Gaps = 26/240 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D +T+C +CGLV+E +D EWR F D + RVG P
Sbjct: 31 CPECG--GRLISDTEHAETVCDDCGLVVEEGEIDRGPEWRAFDAGEKD-EKSRVGAPTTN 87
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 88 MMHDQGLSTNIGWQDKDAYGRS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 144
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL ++++ A+ IY++ ++ L GR+ E + A LY + RQ PR++ E
Sbjct: 145 IDRMASALGLPESVRETASVIYRRALEEDLLPGRSIEGVATASLYASARQAGTPRSLDEI 204
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
+V+ K E+ R ++V+ L +E+ Y+ RF S+L ++++ + A+
Sbjct: 205 SAVSR-VEKDEVARTYRYVVREL------GLEVKPADPEQYVPRFASDLDLSDETERRAR 257
>gi|55378764|ref|YP_136614.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448637593|ref|ZP_21675831.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|448651893|ref|ZP_21680906.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|55231489|gb|AAV46908.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445764440|gb|EMA15595.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445769296|gb|EMA20370.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
Length = 339
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 119/250 (47%), Gaps = 24/250 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DC +V D S G+T+C CGLV++ +D EWR F ++ D+ RVG P
Sbjct: 30 CPDCG--GSLVTDDSRGETVCESCGLVVDEDEIDHGPEWRAFDSQERDN-KRRVGAPTTE 86
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQA---------RSSHPDRNLIQAFKSI 113
+ GLST I K G S L + K+Q H +RNL QA I
Sbjct: 87 MKHDKGLSTNIGWQDKDAYGNS--LSTRQREKMQRLRTWDERFRTRDHAERNLKQALGEI 144
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M LG+ + ++ A+ IY++ D+ L GR+ E + A LY A RQ N P+T+ +
Sbjct: 145 DRMGSALGVPESARETASVIYRRALDEGMLPGRSIEGMATAALYAAVRQANLPQTLDDMA 204
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
V+ + E RA ++ + L S+++G + YL +F S L + + A+
Sbjct: 205 VVSR-VDEMEFTRAYRYLNREL------SLQVGPPDPATYLSKFVSKLDADDALERQARA 257
Query: 234 AVQKSEDLDI 243
++ ++ ++
Sbjct: 258 LIEAGKEANV 267
>gi|322369726|ref|ZP_08044289.1| transcription initiation factor IIB [Haladaptatus paucihalophilus
DX253]
gi|320550644|gb|EFW92295.1| transcription initiation factor IIB [Haladaptatus paucihalophilus
DX253]
Length = 352
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 115/239 (48%), Gaps = 22/239 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ +V D G+T C +CGL+ E ++D EWR F E D + RVG P
Sbjct: 59 CPECQ--GRIVRDDEHGETRCEDCGLICEDRALDHGPEWRSFDTEEQD-EKSRVGAPTTQ 115
Query: 66 LLSGGGLSTVI----------AKPTAG-GSTELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
L+ GLST I A PT E L + + + + +RNL QA I
Sbjct: 116 LMHDKGLSTTIGWQNTDASGRAVPTEKRARLERLRTWDERFRTKDAQ-ERNLKQALGEIQ 174
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LGL +++ A +Y++ + L GR+ E + A LY A RQ++ PR + F
Sbjct: 175 RMGSALGLPEPVRETAGVLYRRAVESDLLPGRSIEGMATASLYAAARQQHFPRPLTTFAD 234
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
V+ K I RA ++L E+G +E S Y+ +F S L ++++A + A+E
Sbjct: 235 VSR-VEKIRIQRA----YRYLSRELGLQIEPE--DPSTYIPQFASTLEISDEAERTARE 286
>gi|448331025|ref|ZP_21520299.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445610149|gb|ELY63924.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 324
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 121/242 (50%), Gaps = 23/242 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C V D G+ C+ECGLVL+A ++D EWR +++ + RVG P++
Sbjct: 30 CPECD--GSVHRDEEHGERTCTECGLVLDADAIDYGPEWRTLDDDADER--RRVGAPVSK 85
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSG----SLGKLQARSSH------PDRNLIQAFKSISA 115
L GLST I +SG L +L+ + +RNL QAF I
Sbjct: 86 LRHDKGLSTTIGWRDEDAYGNRISGRKREQLQRLRTWNERFTSKDAAERNLKQAFGEIER 145
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL ++ A +Y++ D+ L GR+ EA+ A LY A R+ PRT+ F SV
Sbjct: 146 MASALGLPEPCRETAGVLYRRAVDEGLLPGRSIEAMSTASLYAAARRHGTPRTLVAFTSV 205
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMG-TIHASDYLRRFCSNLGMTNQAVKAAQEA 234
+ K I RA ++L +E+G +E IH YL ++ S L +++ A + A+E
Sbjct: 206 SR-VDKLPIQRA----YRYLSSELGLQIEPADPIH---YLPQYASVLEISDDAERLAREI 257
Query: 235 VQ 236
++
Sbjct: 258 LE 259
>gi|379335167|gb|AFD03156.1| transcription factor TFIIB cyclin-related protein [uncultured
bacterium W5-77b]
Length = 303
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 125/252 (49%), Gaps = 19/252 (7%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGG 61
A C C + T +V D + G+ C +CG V+ + EWR F+ E + R G
Sbjct: 7 AKEKCPRCGKAT-LVTDANTGENFCGKCGFVVTEKVSESGPEWRSFSKEEHEGRS-RAGV 64
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGSLG----KLQARSSHP------DRNLIQAFK 111
P + + GL+T+I + + LS S+ +L+ S DRN QAF
Sbjct: 65 PTSLAMHDMGLATIIGPADRDATGKPLSASMKSTIERLRTWDSRSQVHEPVDRNFRQAFS 124
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
+ + D+L + T+ ++A IY+K ++ +RGR+ A++A+ LY ACR PRT+K+
Sbjct: 125 ELDRLKDKLAVGDTVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKD 184
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
+ +N +K+I R +++ L ++M ++ + + R S G++ + + A
Sbjct: 185 IANASN-IKRKDIARCYRLLLREL------GLKMPVVNPVNCISRIASIAGLSEKTKREA 237
Query: 232 QEAVQKSEDLDI 243
+ ++ +E++ I
Sbjct: 238 SKILKNAEEVKI 249
>gi|395646538|ref|ZP_10434398.1| Transcription initiation factor IIB [Methanofollis liminatans DSM
4140]
gi|395443278|gb|EJG08035.1| Transcription initiation factor IIB [Methanofollis liminatans DSM
4140]
Length = 336
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 124/255 (48%), Gaps = 27/255 (10%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VR 58
++ C +C ++V D+ + +C CGLV++ +D EWR F DHD R
Sbjct: 37 ENVCPECGS-RQLVHDYERAELVCKSCGLVIDEEFIDRGPEWRAF-----DHDQRVKRSR 90
Query: 59 VGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQ 108
VG P+ + GLST+I +S L K Q R S+ +RNL
Sbjct: 91 VGAPMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAF 150
Query: 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT 168
A + M+ LGL +++ A IY+ D+ +RGR+ E + AA LY ACRQ + PRT
Sbjct: 151 ALSELDRMASALGLPRNVRETAAVIYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRT 210
Query: 169 VKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAV 228
+ E V+ ++KEIGR FI + L +++ DY+ RFCS L + +
Sbjct: 211 LDEIAEVSR-VSRKEIGRTYRFISREL------GLKLLPTSPIDYVPRFCSGLTLKGEVQ 263
Query: 229 KAAQEAVQKSEDLDI 243
A E ++++ + ++
Sbjct: 264 SRAVEILRQAGEREL 278
>gi|308081538|ref|NP_001183266.1| uncharacterized protein LOC100501659 [Zea mays]
gi|238010416|gb|ACR36243.1| unknown [Zea mays]
gi|413946338|gb|AFW78987.1| hypothetical protein ZEAMMB73_751937 [Zea mays]
Length = 308
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 97/165 (58%), Gaps = 16/165 (9%)
Query: 96 QARSSHP--DRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLR--------- 144
QA++ P +R++ + ++I+ M+ RLG+ +DRA E++ ++E++K
Sbjct: 89 QAQAQQPLGERDMPEEHRAIADMAARLGIAAGARDRAVEVFMRMEERKGKSKSHHYYTKG 148
Query: 145 -GRNQEAIVAACLYIACRQENKPRTVKEFCSVA--NGTTKKEIGRAKEFIVKHLEAEMG- 200
GR+ +A+ AACLY+ACR PRT KE + +K+IG+ I K L E G
Sbjct: 149 AGRSGDALYAACLYVACRSAGAPRTFKELAAATRDGPAARKDIGKLIALIRKRLGDEAGG 208
Query: 201 QSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED-LDIR 244
++++MG + A+DY+ RF S LG+ V+A QEA ++ +D LD+R
Sbjct: 209 EAMDMGVVRAADYVERFGSLLGIGEGEVRAVQEAARRMQDHLDVR 253
>gi|344212801|ref|YP_004797121.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|343784156|gb|AEM58133.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
Length = 339
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 119/250 (47%), Gaps = 24/250 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DC +V D S G+T+C CGLV++ +D EWR F ++ D+ RVG P
Sbjct: 30 CPDCG--GSLVTDDSRGETVCEACGLVVDEDEIDHGPEWRAFDSQERDN-KRRVGAPTTE 86
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQA---------RSSHPDRNLIQAFKSI 113
+ GLST I K G S L + K+Q H +RNL QA I
Sbjct: 87 MKHDKGLSTNIGWQNKDAYGNS--LSTRQREKMQRLRTWDERFRTRDHAERNLKQALGEI 144
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M LG+ + ++ A+ IY++ D+ L GR+ E + A LY A RQ N P+T+ +
Sbjct: 145 DRMGSALGVPESARETASVIYRRALDEGMLPGRSIEGMATAALYAAIRQSNLPQTLDDMA 204
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
V+ + E RA ++ + L S+++G + YL +F S L + + A+
Sbjct: 205 VVSR-VDEMEFTRAYRYLNREL------SLQVGPPDPATYLSKFISELDADDALERQARA 257
Query: 234 AVQKSEDLDI 243
++ ++ ++
Sbjct: 258 LIEAGKEANV 267
>gi|110667197|ref|YP_657008.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109624944|emb|CAJ51356.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 329
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 105/225 (46%), Gaps = 18/225 (8%)
Query: 22 GDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTA 81
G+ I G+V+E +D EWR F N S RVG P + GL+T I
Sbjct: 50 GEIIHEPTGIVVEEEQIDRGPEWRAF-NHSERQSKSRVGAPTTKTMHDKGLTTTIDWKDK 108
Query: 82 GGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRAN 131
LS L K Q R D RNL A + M+ LG+ ++++ A+
Sbjct: 109 DAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEVDRMASALGVPRSVREVAS 168
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
IY++ + +RGR+ E + + LY ACR+E PR+++E V+ +KEIGR +I
Sbjct: 169 VIYRRALSEDLIRGRSIEGVSTSALYAACRKEGIPRSLEEISEVSR-VERKEIGRTYRYI 227
Query: 192 VKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQ 236
+ L +EM + Y+ RFCS L ++ + A E ++
Sbjct: 228 SQEL------GLEMRPVDPKKYVPRFCSELDLSKEVQSKADEIIE 266
>gi|385802603|ref|YP_005839003.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339728095|emb|CCC39217.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 329
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 105/225 (46%), Gaps = 18/225 (8%)
Query: 22 GDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTA 81
G+ I G+V+E +D EWR F N S RVG P + GL+T I
Sbjct: 50 GEIIHEPTGIVVEEEQIDRGPEWRAF-NHSERQSKSRVGAPTTKTMHDKGLTTTIDWKDK 108
Query: 82 GGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRAN 131
LS L K Q R D RNL A + M+ LG+ ++++ A+
Sbjct: 109 DAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEVDRMASALGVPRSVREVAS 168
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
IY++ + +RGR+ E + + LY ACR+E PR+++E V+ +KEIGR +I
Sbjct: 169 VIYRRALSEDLIRGRSIEGVSTSALYAACRKEGIPRSLEEISEVSR-VERKEIGRTYRYI 227
Query: 192 VKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQ 236
+ L +EM + Y+ RFCS L ++ + A E ++
Sbjct: 228 SQEL------GLEMRPVDPKKYVPRFCSELDLSKEVQSKADEIIE 266
>gi|448450737|ref|ZP_21592470.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445811248|gb|EMA61256.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
Length = 317
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 109/225 (48%), Gaps = 18/225 (8%)
Query: 22 GDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA---K 78
G+ I E G+++E +D EWR F N + + RVG P + GL+T I K
Sbjct: 38 GELIHEETGMIIEDEQIDPGPEWRAF-NHNERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 96
Query: 79 PTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRAN 131
G S S L K Q R D RNL A I M+ LG+ ++++ A+
Sbjct: 97 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 156
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
IY++ ++ +RGR+ E + A LY ACR+E PR+++E V+ +KEIGR +I
Sbjct: 157 VIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEISEVSR-VDRKEIGRTYRYI 215
Query: 192 VKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQ 236
+ L +EM + Y+ RF S L ++ + A E ++
Sbjct: 216 SQEL------GLEMRPVDPKKYVPRFSSELELSEEVQSKANEIIE 254
>gi|448418757|ref|ZP_21579934.1| transcription initiation factor IIB [Halosarcina pallida JCM 14848]
gi|445676151|gb|ELZ28675.1| transcription initiation factor IIB [Halosarcina pallida JCM 14848]
Length = 352
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 115/239 (48%), Gaps = 22/239 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ +V D G+T C +CGL+ E ++D EWR F E D + RVG P
Sbjct: 59 CPECQ--GRIVRDDEHGETRCEDCGLICEDRALDHGPEWRSFDTEEQD-EKSRVGAPTTQ 115
Query: 66 LLSGGGLSTVI----------AKPTAG-GSTELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
L+ GLST I A PT E L + + + + +RNL QA I
Sbjct: 116 LMHDKGLSTTIGWQNTDASGRAVPTEKRARLERLRTWDERFRTKDAQ-ERNLKQALGEIQ 174
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LGL +++ A +Y++ + L GR+ E + A LY A RQ++ PR + F
Sbjct: 175 RMGSALGLPEPVRETAGVLYRRAVESDLLPGRSIEGMATASLYAAARQQHFPRPLTTFAD 234
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
++ K I RA ++L E+G +E S Y+ +F S L ++++A + A+E
Sbjct: 235 ISR-VEKIRIQRA----YRYLSRELGLQIEPE--DPSTYIPQFASTLEISDEAERTARE 286
>gi|448425078|ref|ZP_21582707.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|448510576|ref|ZP_21615953.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|448522305|ref|ZP_21618428.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445681338|gb|ELZ33772.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445695849|gb|ELZ47948.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445702249|gb|ELZ54207.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
Length = 317
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 109/225 (48%), Gaps = 18/225 (8%)
Query: 22 GDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA---K 78
G+ I E G+++E +D EWR F N + + RVG P + GL+T I K
Sbjct: 38 GELIHEETGMIIEDEQIDPGPEWRAF-NHNERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 96
Query: 79 PTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRAN 131
G S S L K Q R D RNL A I M+ LG+ ++++ A+
Sbjct: 97 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 156
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
IY++ ++ +RGR+ E + A LY ACR+E PR+++E V+ +KEIGR +I
Sbjct: 157 VIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEISEVSR-VDRKEIGRTYRYI 215
Query: 192 VKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQ 236
+ L +EM + Y+ RF S L ++ + A E ++
Sbjct: 216 SQEL------GLEMRPVDPKKYVPRFSSELELSEEVQSKANEIIE 254
>gi|448492136|ref|ZP_21608730.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445691595|gb|ELZ43779.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
Length = 317
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 109/225 (48%), Gaps = 18/225 (8%)
Query: 22 GDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA---K 78
G+ I E G+++E +D EWR F N + + RVG P + GL+T I K
Sbjct: 38 GELIHEETGMIIEDEQIDPGPEWRAF-NHNERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 96
Query: 79 PTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRAN 131
G S S L K Q R D RNL A I M+ LG+ ++++ A+
Sbjct: 97 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 156
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
IY++ ++ +RGR+ E + A LY ACR+E PR+++E V+ +KEIGR +I
Sbjct: 157 VIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEISEVSR-VDRKEIGRTYRYI 215
Query: 192 VKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQ 236
+ L +EM + Y+ RF S L ++ + A E ++
Sbjct: 216 SQEL------GLEMRPVDPKKYVPRFSSELELSEEVQSKANEIIE 254
>gi|324514940|gb|ADY46036.1| Transcription initiation factor IIB [Ascaris suum]
Length = 202
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 83/138 (60%), Gaps = 7/138 (5%)
Query: 106 LIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENK 165
+ +A I MS R+ L +I+D A ++++ V D + L G+N EA AACLYIACR+E
Sbjct: 1 MTEALGVIREMSARMQLPKSIEDSAAKVFRDVVDTRALVGKNNEAKAAACLYIACRKEGV 60
Query: 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTN 225
PRT KE C+V+ +KKEIGR + ++ LE + Q I ++D++ RFC NLG+++
Sbjct: 61 PRTFKEVCAVSR-VSKKEIGRCFKLAIRSLETNLEQ------ITSADFMSRFCGNLGLSH 113
Query: 226 QAVKAAQEAVQKSEDLDI 243
A +K+ + D+
Sbjct: 114 ALQMVATTIAKKAVERDL 131
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%)
Query: 90 GSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQE 149
G KL RS + I + +S LGL ++ A I KK ++ + GR+
Sbjct: 79 GRCFKLAIRSLETNLEQITSADFMSRFCGNLGLSHALQMVATTIAKKAVERDLVAGRSPI 138
Query: 150 AIVAACLYIACRQENKPRTVKEFCSVANG 178
+I AA +Y+A + N+ RT KE ++A
Sbjct: 139 SIAAAAIYMASQASNERRTAKEIGAIAGA 167
>gi|448732994|ref|ZP_21715240.1| transcription initiation factor TFB 2 [Halococcus salifodinae DSM
8989]
gi|445803327|gb|EMA53624.1| transcription initiation factor TFB 2 [Halococcus salifodinae DSM
8989]
Length = 323
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 124/248 (50%), Gaps = 25/248 (10%)
Query: 6 CADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C +C RLT D G+ CSECGLV++ +D EWR + + + RVG P
Sbjct: 26 CPECDGRLT---HDSEHGERACSECGLVVDEDEIDHGPEWRAHTQKERN-EKSRVGAPTT 81
Query: 65 PLLSGGGLSTVIA--KPTAGGSTELLSGSLGKLQA--------RSSHP-DRNLIQAFKSI 113
L+ GLST I+ A G+T L S ++Q R+ +P +R+L QA I
Sbjct: 82 NLMHDKGLSTKISWQDKDAYGNT-LSSQKRQQMQRLRTWDERFRTRNPKERSLKQALSEI 140
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
MS LGL ++++ A IY++ ++ L GR+ E + A L+IA RQ N PR++
Sbjct: 141 ERMSSALGLPKSVRETAGVIYRRALEENLLPGRSVEGVSTAALHIASRQANIPRSLDTLT 200
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
V+ K I R +++ + LE + + +YL RF S L +++ + ++E
Sbjct: 201 EVSR-IGKLPITRTYQYVARELE------INLPPADPLEYLPRFVSALDRSDEVERRSRE 253
Query: 234 AVQK-SED 240
++ SED
Sbjct: 254 LLETVSED 261
>gi|355572234|ref|ZP_09043416.1| Transcription initiation factor IIB [Methanolinea tarda NOBI-1]
gi|354824950|gb|EHF09189.1| Transcription initiation factor IIB [Methanolinea tarda NOBI-1]
Length = 338
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 121/250 (48%), Gaps = 27/250 (10%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VR 58
++ C +C ++V D+ + +C CGLV++ +D EWR F DHD R
Sbjct: 39 ETVCPECGS-RQLVHDYERAELVCQNCGLVIDDDFIDRGPEWRAF-----DHDQRMKRSR 92
Query: 59 VGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQ 108
VG P+ + GLST+I +S L K Q R S+ +RNL
Sbjct: 93 VGAPMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAF 152
Query: 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT 168
A + M+ LGL +++ A +Y+ D+ +RGR+ E + AA LY ACRQ + PRT
Sbjct: 153 ALSELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRT 212
Query: 169 VKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAV 228
+ E V+ ++KEIGR FI + L +++ DY+ RFCS L + +
Sbjct: 213 LDEIAEVSR-VSRKEIGRTYRFISREL------GLKLLPTSPIDYVPRFCSGLNLKGEVQ 265
Query: 229 KAAQEAVQKS 238
A E ++++
Sbjct: 266 SRAVEILRQA 275
>gi|374630349|ref|ZP_09702734.1| Transcription initiation factor IIB (TFIIB) [Methanoplanus limicola
DSM 2279]
gi|373908462|gb|EHQ36566.1| Transcription initiation factor IIB (TFIIB) [Methanoplanus limicola
DSM 2279]
Length = 335
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 79/254 (31%), Positives = 122/254 (48%), Gaps = 27/254 (10%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRV 59
+ C +C ++V D+ + C CGLVLE +D EWR F DHD RV
Sbjct: 37 TVCPECGS-RQLVQDYERAELTCQNCGLVLEEEFIDRGPEWRAF-----DHDQRMKRSRV 90
Query: 60 GGPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQA 109
G P+ + GLST+I +S L K Q R S+ +RNL A
Sbjct: 91 GAPMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFA 150
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
+ M+ LGL +++ A +Y+ ++ +RGR+ E + AA LY ACRQ N PRT+
Sbjct: 151 LSELDRMASALGLPRNVRETAAVVYRDAVEKNLIRGRSIEGVAAAALYAACRQCNVPRTL 210
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVK 229
E V+ ++KEIGR FI + L +++ DY+ RFCS L + +
Sbjct: 211 DEIAEVSR-VSRKEIGRTYRFISREL------GLKLLPTSPIDYVPRFCSGLTLKGEVQS 263
Query: 230 AAQEAVQKSEDLDI 243
A E ++++ + ++
Sbjct: 264 RAVEILRQAGEKEL 277
>gi|237838491|ref|XP_002368543.1| transcription initiation factor IIB, putative [Toxoplasma gondii
ME49]
gi|211966207|gb|EEB01403.1| transcription initiation factor IIB, putative [Toxoplasma gondii
ME49]
gi|221484187|gb|EEE22483.1| transcription initiation factor IIB, putative [Toxoplasma gondii
GT1]
gi|221505834|gb|EEE31479.1| transcription initiation factor IIB, putative [Toxoplasma gondii
VEG]
Length = 464
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 119/259 (45%), Gaps = 24/259 (9%)
Query: 5 YCADCKRLTE-VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH-----DPVR 58
YC + + +VFD S+GD +C ECGL++E + E EWR F+ E++ D R
Sbjct: 113 YCGPARNGAQTIVFDSSSGDQLCRECGLIVEEKVLSEEQEWRNFSAEAASSSRGGADRNR 172
Query: 59 VGGPLNPLLSGGGLSTVIAKPTAGGS------------TELLSGSLGKLQARSSHPDRNL 106
VG L+ L GG+ T + ++GG +L + L + DR L
Sbjct: 173 VGDALDAWLEDGGIGTTMLVASSGGPLAGKAAWSAKRLQQLHEAATSGLGSGVGSGDRQL 232
Query: 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKV-EDQKPLRGRNQEAIVAACLYIACRQENK 165
AF I + + L + +RA EI K + +D LR R+ + A Y+ACR+
Sbjct: 233 KVAFNYIRLIGEAFALRDNVLERAKEITKDLMQDGVQLRTRSNTTTMLAITYLACREAGV 292
Query: 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMG-QSVEMGTIHASDYLRRFCSNLGMT 224
RTVKE ++KE+G+A I K L G S E A+ L R+CS L ++
Sbjct: 293 TRTVKELVVYDRAISEKELGKAINRIKKLLPQRGGVNSAE----SATQLLPRYCSRLQLS 348
Query: 225 NQAVKAAQEAVQKSEDLDI 243
A+ +++ + I
Sbjct: 349 MHVADVAEHVAKRATQVII 367
>gi|337283539|ref|YP_004623013.1| putative transcription initiation factor IIB [Pyrococcus yayanosii
CH1]
gi|334899473|gb|AEH23741.1| putative transcription initiation factor IIB [Pyrococcus yayanosii
CH1]
Length = 322
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 124/239 (51%), Gaps = 15/239 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIF-ANESSDHDPVRVGGPLN 64
C +C T +V+D G+ C CG +++ +D ++RIF +N+ R+G P +
Sbjct: 11 CPNCGS-TNLVYDPYRGEIYCQNCGEIIQENIIDLRPDYRIFDSNQWKKRS--RIGAPES 67
Query: 65 PLLSGGGLSTVIA--KPTAGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDR 119
LL GLST I + G E + L + Q+R S +RNL A + ++ +
Sbjct: 68 ILLHDKGLSTDIGIDRSLTGLMREKMY-RLRRWQSRLRVSDAAERNLAFALSELDRITAQ 126
Query: 120 LGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179
L L +++ A +Y++ + +RGR+ E+++AAC+Y ACR PRT+ E ++
Sbjct: 127 LKLPKHVEEEAARLYREAVRRGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDISR-V 185
Query: 180 TKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKS 238
KKEIGR+ FI ++L + + +DY+ +F LG++ + + A E ++++
Sbjct: 186 DKKEIGRSYRFIARNLNLTPKKLF----VKPTDYVNKFADELGLSEKVRRKAVEILEEA 240
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LGL ++ +A EI ++ + G++ +VAA LYIA
Sbjct: 205 PKKLFVKPTDYVNKFADELGLSEKVRRKAVEILEEAYRKGLTSGKSPAGLVAAALYIASL 264
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E + RT +E +A T R KE + K
Sbjct: 265 LEGEKRTQREVAEIARVTEVTVRNRYKELVEK 296
>gi|448732431|ref|ZP_21714711.1| transcription initiation factor IIB [Halococcus salifodinae DSM
8989]
gi|445804689|gb|EMA54922.1| transcription initiation factor IIB [Halococcus salifodinae DSM
8989]
Length = 283
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 106/222 (47%), Gaps = 15/222 (6%)
Query: 23 DTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTA- 81
+T+C++CGLV+ +D EWR F E+ R G PL GLST I + T
Sbjct: 20 ETVCTKCGLVVAVDEIDRGPEWRSFERETRK----RTGAPLTRSRHDRGLSTEIGRSTRL 75
Query: 82 GGSTELLSGSLGKLQARS---SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVE 138
G L L + RS S +RN + AF I LGL +++DRA +++ +
Sbjct: 76 TGRKRRLFARLRRQHTRSRIASKAERNRVYAFTEIRRQVCALGLSDSVRDRACVLFESAQ 135
Query: 139 DQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198
D LRGR+ E AA +Y CR + RT+ E +VA ++ E+ A + + + L
Sbjct: 136 DADLLRGRSLEGFAAATIYAVCRTDGVSRTLAEIVTVAKA-SRDELTAAYDALNRDL--- 191
Query: 199 MGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
+ G I S+YL RF S L + + A+E V + D
Sbjct: 192 ---GLPTGPIDPSEYLARFASQLDLPHGVEARARELVAEGRD 230
>gi|395324790|gb|EJF57224.1| hypothetical protein DICSQDRAFT_92561 [Dichomitus squalens LYAD-421
SS1]
Length = 359
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 86/255 (33%), Positives = 125/255 (49%), Gaps = 22/255 (8%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD---HDPVRVGG 61
C DC+ +V + GD +C CGLVL +D SEWR F + SD H RVG
Sbjct: 31 CRDCQEYPPNIVEEFRDGDLVCGSCGLVLSDRIIDTRSEWREFTSTHSDETTHAHCRVGQ 90
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKL--QARSSHP-DRNLIQAFKSISAMSD 118
+ L G GL +A + S +S L ++ QA + P +R + QAF+ I M
Sbjct: 91 VQDRL--GVGLEH-LATTISVDSGSSISQDLRRVARQAENLSPSERRVRQAFRDIDDMCA 147
Query: 119 RLGLVTTIKDRANEIYKKV--EDQKP--LRGRNQ-EAIVAACLYIACRQENKPRTVKEFC 173
R+ L T+ D ++Y ++ E+ +P LR R Q EA + AC +IACRQ PRT E C
Sbjct: 148 RIQLPNTVLDITKQLYWRIDQENIRPSRLRSRAQYEATLGACFFIACRQARVPRTFIEIC 207
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSV----EMGTIHA--SDYLRRFCSNLGMTNQA 227
V + K++IGRA + + G +V E G D L R+C+ LG+
Sbjct: 208 QVTS-VDKQDIGRAYRELEQKFNLRSGSTVGYDEESGAYEGGPQDLLVRYCNYLGLPQSV 266
Query: 228 VKAAQEAVQKSEDLD 242
V + + V K +L+
Sbjct: 267 VSVSTDVVVKLRELE 281
>gi|340344517|ref|ZP_08667649.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339519658|gb|EGP93381.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 302
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 124/249 (49%), Gaps = 22/249 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETS-EWRIFANESSDHDPVRVGGPLN 64
C C + T +V D + G+ C +CG V+ VDE+ EWR F+NE + R G P +
Sbjct: 11 CPRCGQGT-LVTDATTGENFCGKCGFVI-TDKVDESGPEWRSFSNEGENKS--RAGVPTS 66
Query: 65 PLLSGGGLSTVIAK----PTAGGSTELLSGSLGKLQARSSHP------DRNLIQAFKSIS 114
+ GL+TVI T T + ++ +L+ S DRN QAF +
Sbjct: 67 LAMHDMGLATVINPQNRDATGKPLTSAMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELD 126
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
+ D+L + + ++A IY+K ++ +RGR+ A++A+ LY ACR PRT+K+
Sbjct: 127 RLKDKLAVGDAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDIGH 186
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
+N +K+I R +++ L +++M + + R S G++ + +AA +
Sbjct: 187 ASN-IKRKDIARCYRLLLREL------NLKMPVVDPVKCISRIASKAGLSEKTKRAATKI 239
Query: 235 VQKSEDLDI 243
+Q +E+ I
Sbjct: 240 LQTAEEQKI 248
Score = 37.4 bits (85), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 106 LIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENK 165
++ K IS ++ + GL K A +I + E+QK G++ + AA LY+AC +
Sbjct: 212 VVDPVKCISRIASKAGLSEKTKRAATKILQTAEEQKISAGKDPMGLAAAALYVACVTNGE 271
Query: 166 PRTVKEFCSVANGT 179
+T ++ A T
Sbjct: 272 NKTQRDVAEAAGVT 285
>gi|448482845|ref|ZP_21605616.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
gi|445821131|gb|EMA70927.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
Length = 331
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 109/222 (49%), Gaps = 13/222 (5%)
Query: 21 AGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPT 80
A + +C++CGLV+EA +D EWR F ++ D +P R G PL GLST I + T
Sbjct: 63 AAERVCADCGLVVEADRIDHGPEWRSFDDD--DANPKRTGAPLTRSRHDRGLSTEIGRST 120
Query: 81 AGGSTELLSGSLGKLQAR----SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKK 136
+ + + Q S+ DRN + A+ I ++ L L +++D A ++
Sbjct: 121 KVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGVLELPDSVRDAACALFDS 180
Query: 137 VEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLE 196
+++ LRGR+ E AAC+Y+ACR + RTV E C+ A T + +
Sbjct: 181 AQEESLLRGRSLEGFAAACVYVACRTADVARTVGEVCAEAKATEDE-----HRAAFDAMN 235
Query: 197 AEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKS 238
E+G + + ++YL RF S+LG + A E +++
Sbjct: 236 RELG--LPIAPSGPAEYLPRFASDLGCDPAVERRAGELAERA 275
>gi|448427470|ref|ZP_21583785.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445678157|gb|ELZ30651.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
Length = 343
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 109/222 (49%), Gaps = 13/222 (5%)
Query: 21 AGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPT 80
A + +C++CGLV+EA +D EWR F ++ D +P R G PL GLST I + T
Sbjct: 75 AAERVCADCGLVVEADRIDHGPEWRSFDDD--DANPKRTGAPLTRSRHDRGLSTEIGRST 132
Query: 81 AGGSTELLSGSLGKLQAR----SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKK 136
+ + + Q S+ DRN + A+ I ++ L L +++D A ++
Sbjct: 133 KVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGVLELPDSVRDAACALFDS 192
Query: 137 VEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLE 196
+++ LRGR+ E AAC+Y+ACR + RTV E C+ A T + +
Sbjct: 193 AQEESLLRGRSLEGFAAACVYVACRTADVARTVGEVCAEAKATEDE-----HRAAFDAMN 247
Query: 197 AEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKS 238
E+G + + ++YL RF S+LG + A E +++
Sbjct: 248 RELG--LPIAPSGPAEYLPRFASDLGCDPAVERRAGELAERA 287
>gi|329764985|ref|ZP_08256572.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|393795852|ref|ZP_10379216.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
gi|329138522|gb|EGG42771.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 305
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 120/246 (48%), Gaps = 21/246 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH-DPVRVGGPLN 64
C C + ++ D G+ C +CG V+ S + EWR F + +H + R G P +
Sbjct: 11 CPRCAK-NSLLTDDVTGERFCGKCGYVISEKSQESGPEWRSFTQD--EHGNKARAGAPTS 67
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLG----KLQARSSHP------DRNLIQAFKSIS 114
+ GLST+I S + L+ S+ +L+ S DRNL QA ++
Sbjct: 68 LTMHDMGLSTIINPMNKDASGKPLTASMKSTIERLRTWDSRSQVHESVDRNLRQALSELN 127
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
+ D+L L + ++A IY+K ++K +RGR+ A++A+ LY ACR PRT+ +
Sbjct: 128 RLKDKLSLSDAVIEKAAYIYRKAIEKKLVRGRSISAMIASALYAACRDTETPRTLNDVGE 187
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
AN KK+I R + + LE ++M + L R S +G+T + + A +
Sbjct: 188 AAN-LKKKDIARCYRLLHRELE------LKMPVVDPIQCLARIASRIGITEKTKRYAAKV 240
Query: 235 VQKSED 240
++ S++
Sbjct: 241 LKISQE 246
>gi|161527532|ref|YP_001581358.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160338833|gb|ABX11920.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 301
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 121/241 (50%), Gaps = 20/241 (8%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH-DPVRVGGPLNPLLSGGGL 72
++V D+ +G+ CS+CG V+ + EWR F + +H D R G P + + GL
Sbjct: 16 KLVTDNESGEMFCSKCGFVITEKLQEAGPEWRSFTQD--EHGDRARAGAPTSLTMHDMGL 73
Query: 73 STVIAKPTAGGSTELLSGSLG----KLQARSSHP------DRNLIQAFKSISAMSDRLGL 122
+T+I S L+ S+ +L+ S DRN QAF ++ + D+L +
Sbjct: 74 ATIINPVNKDASGRPLTASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELNRLKDKLAI 133
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+ ++A IY+K D+ +RGR+ A++A+ LY ACR PR +K+ AN +K
Sbjct: 134 SDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTETPRNLKDVEQAAN-IKRK 192
Query: 183 EIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLD 242
+I R +VK L+ ++M + + R S +G+ + + A + ++K+++ +
Sbjct: 193 DIARCYRLLVKELD------LKMPVTDSIQCVARIASRIGIAEKTKRYAVKVLKKAQENE 246
Query: 243 I 243
+
Sbjct: 247 V 247
>gi|448513858|ref|ZP_21616789.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|448526632|ref|ZP_21619901.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445693011|gb|ELZ45174.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445698859|gb|ELZ50897.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
Length = 337
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 109/222 (49%), Gaps = 13/222 (5%)
Query: 21 AGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPT 80
A + +C++CGLV+EA +D EWR F ++ D +P R G PL GLST I + T
Sbjct: 69 AAERVCADCGLVVEADRIDHGPEWRSFDDD--DANPKRTGAPLTRSRHDRGLSTEIGRST 126
Query: 81 AGGSTELLSGSLGKLQAR----SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKK 136
+ + + Q S+ DRN + A+ I ++ L L +++D A ++
Sbjct: 127 KVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGVLELPDSVRDAACALFDS 186
Query: 137 VEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLE 196
+++ LRGR+ E AAC+Y+ACR + RTV E C+ A T + +
Sbjct: 187 AQEESLLRGRSLEGFAAACVYVACRTADVARTVGEVCAEAKATEDE-----HRAAFDAMN 241
Query: 197 AEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKS 238
E+G + + ++YL RF S+LG + A E +++
Sbjct: 242 RELG--LPIAPSGPAEYLPRFASDLGCDPAVERRAGELAERA 281
>gi|393795800|ref|ZP_10379164.1| transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia BG20]
Length = 303
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 120/250 (48%), Gaps = 19/250 (7%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
S C C R ++ D + G+ CS+CG V E EWR F+ + D+ R G P
Sbjct: 9 SRCQRCNR-GAILTDSNTGEMFCSKCGFVATDRVEQEGPEWRSFSKDEGDNR-TRTGTPT 66
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKL---------QARSSHP-DRNLIQAFKSI 113
+ + GL+T+I + + LS S+ +++ P DRN QAF +
Sbjct: 67 SLAIHDMGLATIINPINKDATGKPLSASMKSTIERLRTWDNRSQVHEPVDRNFRQAFSEL 126
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
+ +L L T+ ++ IY+K D+ +RGR+ ++AA LY ACR PRT+ +
Sbjct: 127 DRLKTKLALSDTVIEKTAYIYRKALDKGLVRGRSIPGLIAASLYAACRNTETPRTLSDVA 186
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
+ N +K+I R +++ L+ ++M ++ + R SN G++ + + A E
Sbjct: 187 NSIN-IKRKDIARCYRLLLRELD------LKMPVVNPVKCISRISSNAGLSEKTKRKAIE 239
Query: 234 AVQKSEDLDI 243
+ ++ +++
Sbjct: 240 ILDQAAKIEL 249
>gi|242091263|ref|XP_002441464.1| hypothetical protein SORBIDRAFT_09g027300 [Sorghum bicolor]
gi|241946749|gb|EES19894.1| hypothetical protein SORBIDRAFT_09g027300 [Sorghum bicolor]
Length = 286
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 103 DRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLR--------GRNQEAIVAA 154
D+ + +A+ +I+ M+ RLG+ +DRA E++ ++E++K GR+ +A+ AA
Sbjct: 76 DKAMSEAYGAIANMAARLGIAAGARDRAVEVFLRMEERKGKAHHYYTKGAGRSGDALYAA 135
Query: 155 CLYIACRQENKPRTVKEFCSVA--NGTTKKEIGRAKEFIVKHLEAEMGQS---VEMGTIH 209
CLY+ACR+ PRT KE + +K+IG+ I K L E G +++G +
Sbjct: 136 CLYVACRRAGAPRTFKELAAATRDGPAARKDIGKLIALIRKRLGDEAGGGEAMMDIGVVR 195
Query: 210 ASDYLRRFCSNLGMTNQAVKAAQEAVQKSED-LDIR 244
A+DY+ RF S LGM V+A QEA ++ +D LD+R
Sbjct: 196 AADYVARFGSQLGMEAGEVRAVQEAARRMQDQLDVR 231
>gi|448728406|ref|ZP_21710734.1| Transcription factor TFIIB cyclin-related protein [Halococcus
saccharolyticus DSM 5350]
gi|445796888|gb|EMA47373.1| Transcription factor TFIIB cyclin-related protein [Halococcus
saccharolyticus DSM 5350]
Length = 335
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 117/245 (47%), Gaps = 20/245 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+T+CS+CGLV++ +D EWR F+++ D R G P
Sbjct: 33 CPECD--GRLVDDDEHGETVCSDCGLVVDENEIDHGPEWRAFSSQERDRKK-RTGAPTTK 89
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISA 115
L+ GLS+ I + LS + R +RNL QA I
Sbjct: 90 LMHDKGLSSQIGWQNRDANGNALSARKRQRMQRLRTWDERFRTRDSKERNLKQALGEIER 149
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M LG+ +++ A+ IY++ + L GR+ E + A LY RQ PR+V++ +V
Sbjct: 150 MGSALGVPKDVRETASVIYRRALAEDLLPGRSIEGVSTAALYAGIRQMGLPRSVEDVAAV 209
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ + E RA +I + L +E+G Y+ RF S+L ++++ + A++ +
Sbjct: 210 SR-VDEMEFKRAYRYINQEL------GLEIGPPDPQQYVSRFASDLDVSDETERRARDLL 262
Query: 236 QKSED 240
+ +++
Sbjct: 263 RTAQE 267
>gi|448451292|ref|ZP_21592775.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445810726|gb|EMA60742.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
Length = 343
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 109/222 (49%), Gaps = 13/222 (5%)
Query: 21 AGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPT 80
A + +C++CGLV+EA +D EWR F ++ D +P R G PL GLST I + T
Sbjct: 75 AAERVCADCGLVVEADRIDHGPEWRSFDDD--DANPKRTGAPLTRSRHDRGLSTEIGRST 132
Query: 81 AGGSTELLSGSLGKLQAR----SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKK 136
+ + + Q S+ DRN + A+ I ++ L L +++D A ++
Sbjct: 133 KVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGVLELPDSVRDAACALFDS 192
Query: 137 VEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLE 196
+++ LRGR+ E AAC+Y+ACR + RTV E C+ A T + +
Sbjct: 193 AQEESLLRGRSLEGFAAACVYVACRTADVARTVGEVCAEAKATEDE-----HRAAFDAMN 247
Query: 197 AEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKS 238
E+G + + ++YL RF S+LG + A E +++
Sbjct: 248 RELG--LPIAPSGPAEYLPRFASDLGCDPAVERRAGELAERA 287
>gi|448434357|ref|ZP_21586167.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|445685273|gb|ELZ37628.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
Length = 333
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 106/221 (47%), Gaps = 17/221 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T V + +C +CGLV+EA +D EWR F ++ D +P R G PL
Sbjct: 54 CPECGGRTRV----EGAERVCGDCGLVVEADRIDHGPEWRSFDDD--DTNPKRTGAPLTR 107
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----SSHPDRNLIQAFKSISAMSDRLG 121
GLST I + T + + + Q S+ DRN + A+ I ++ L
Sbjct: 108 SRHDRGLSTEIGRSTKVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGVLE 167
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +++D A ++ +++ LRGR+ E AAC+Y+ACR + RTV E C A +
Sbjct: 168 LPDSVRDTACSLFDSAQEESLLRGRSLEGFAAACVYVACRTADVARTVGEVCDEAKASED 227
Query: 182 KEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLG 222
+ + + E+G + + S+YL RF S+LG
Sbjct: 228 E-----HQAAFDAMNRELG--LPIAPAGPSEYLPRFASDLG 261
>gi|448386369|ref|ZP_21564495.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|445655320|gb|ELZ08166.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 324
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 127/252 (50%), Gaps = 25/252 (9%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
S C +C + +D G+ C++CGLVL+A +D EWR F ++ D RVG P+
Sbjct: 28 SECPEC--TGRIAYDEEHGERACADCGLVLDADGIDYGPEWRRFDDDGDDR--CRVGAPV 83
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLG-----------KLQARSSHPDRNLIQAFKS 112
GLST I +SG + +++S +RNL QA
Sbjct: 84 TARKHDKGLSTTIGWQDEDAYGNRISGRKRRQLQRLRTWNERFTSKNSR-ERNLKQALGE 142
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL ++ A IY++ +++ L GR+ EA+ ACLY A RQ+ PRT+ F
Sbjct: 143 IERMASALGLPEPCRETAGVIYRRAVEEELLPGRSIEAMATACLYAAARQQGTPRTLVAF 202
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMG-TIHASDYLRRFCSNLGMTNQAVKAA 231
SV+ K + RA ++L +E+G +E IH YL ++ S LG+ ++ + A
Sbjct: 203 ASVSR-VEKLPVQRA----YRYLSSELGLKIEPADPIH---YLPQYASELGVGDETERLA 254
Query: 232 QEAVQKSEDLDI 243
++ ++ ++D D+
Sbjct: 255 RKILEAAKDRDL 266
>gi|161528848|ref|YP_001582674.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160340149|gb|ABX13236.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 306
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 123/248 (49%), Gaps = 21/248 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C C + +V D + + CS CG+V+E + D E R FAN ++D G +
Sbjct: 18 CPRCGK-NALVTDVESSEIFCSNCGIVVEEKTNDRRPE-RAFANSTTDKS--HTGDKTSL 73
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISA 115
GLSTVI + LS S+ R ++ DRNL QA +S
Sbjct: 74 TRHDRGLSTVINPFDKDSAGSPLSASMKSSMTRLRKWDNRSRIKTNDDRNLQQALLELSK 133
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M ++L L I ++A+ IY+K ++K ++GR+ ++VAACLY ACR+ PRT++E +
Sbjct: 134 MKEKLSLSDAIAEKASYIYRKALEKKLVKGRSIASLVAACLYAACRESEAPRTLREV-AA 192
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ G +KEI I K L+ ++M I + + + SN ++ + + A + +
Sbjct: 193 SIGIKRKEISATYRLIFKELD------LKMPVIDSVSCIAKIASNAELSEKTKRYAIKIL 246
Query: 236 QKSEDLDI 243
+K+E ++
Sbjct: 247 KKAEKQNM 254
>gi|435846952|ref|YP_007309202.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433673220|gb|AGB37412.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 325
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 114/236 (48%), Gaps = 24/236 (10%)
Query: 18 DHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA 77
D +T+C +CGLV+E +D EWR F D + RVG P ++ GLST I
Sbjct: 41 DSEHAETVCQDCGLVVEEGEIDRGPEWRAFDAAEKD-EKSRVGAPTTNMMHDQGLSTNIG 99
Query: 78 ---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKSISAMSDRLGLVT 124
K G S L S K+Q R S +RNL QA I M+ LGL
Sbjct: 100 WQDKDAYGRS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGEIDRMASALGLPE 156
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+++ A+ IY++ ++ L GR+ E + + LY A RQ PR++ E +V+ K EI
Sbjct: 157 NVRETASVIYRRALEEDLLPGRSIEGVATSALYAAARQAGTPRSLDEISAVSR-VGKDEI 215
Query: 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
R ++++ L +E+ Y+ RF S L ++++ + A+ +Q +++
Sbjct: 216 ARTYRYVIREL------GLEVQPADPESYVPRFASELELSDETERRARSLLQTAKE 265
>gi|448494476|ref|ZP_21609463.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445689311|gb|ELZ41551.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
Length = 336
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 107/220 (48%), Gaps = 17/220 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T V + +C++CGLV+EA +D EWR F ++ D +P R G PL
Sbjct: 57 CPECGGRTRV----DGAERVCTDCGLVVEADRIDHGPEWRSFDDD--DTNPKRTGAPLTR 110
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----SSHPDRNLIQAFKSISAMSDRLG 121
GLST I + T + + + Q S+ DRN + A+ I ++ +G
Sbjct: 111 SRHDRGLSTEIGRSTKVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGVMG 170
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +++D A ++ +++ LRGR+ E AAC+Y+ACR + RTV E C+ A T
Sbjct: 171 LPDSVRDAACALFDSAQEESLLRGRSLEGFAAACVYVACRTADVARTVGEVCAEAKATED 230
Query: 182 KEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNL 221
+ + E+G + + ++YL RF S+L
Sbjct: 231 EH-----RAAFDAMNRELG--LPIAPSGPAEYLPRFASDL 263
>gi|329766227|ref|ZP_08257785.1| transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|329137286|gb|EGG41564.1| transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 303
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 120/250 (48%), Gaps = 19/250 (7%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
S C C R ++ D + G+ CS+CG V E EWR F+ + D+ R G P
Sbjct: 9 SRCQRCNR-GAILTDSNTGEMFCSKCGFVATDRIEQEGPEWRSFSKDEGDNR-TRTGTPT 66
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKL---------QARSSHP-DRNLIQAFKSI 113
+ + GL+T+I + + LS S+ +++ P DRN QAF +
Sbjct: 67 SLAIHDMGLATIINPINKDATGKPLSASMKSTIERLRTWDNRSQVHEPVDRNFRQAFSEL 126
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
+ +L L T+ ++ IY+K D+ +RGR+ ++AA LY ACR PRT+ +
Sbjct: 127 DRLKTKLALSDTVIEKTAYIYRKALDKGLVRGRSIPGLIAASLYAACRNTETPRTLSDVA 186
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
+ N +K+I R +++ L+ ++M ++ + R SN G++ + + A E
Sbjct: 187 NSIN-IKRKDIARCYRLLLRELD------LKMPVVNPVKCISRISSNAGLSEKTKRKAIE 239
Query: 234 AVQKSEDLDI 243
+ ++ +++
Sbjct: 240 ILDQAAKIEL 249
>gi|448466721|ref|ZP_21599226.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
gi|445813581|gb|EMA63558.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
Length = 336
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 104/220 (47%), Gaps = 17/220 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T V A + +C +CGLV+EA +D EWR F ++ D +P R G PL
Sbjct: 57 CPECGGRTRV----DAAERVCDDCGLVVEADRIDHGPEWRSFDDD--DTNPKRTGAPLTR 110
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----SSHPDRNLIQAFKSISAMSDRLG 121
GLST I + T + + + Q S+ DRN + A+ I ++ +G
Sbjct: 111 SRHDRGLSTDIGRSTKVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGAMG 170
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +++D A ++ + + LRGR+ E AAC+Y+ACR + RTV E C+ A T
Sbjct: 171 LPDSVRDAACALFDSAQSESLLRGRSLEGFAAACVYVACRTADVARTVGEVCAEAKATEA 230
Query: 182 KEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNL 221
+ + E+G + + +YL RF S L
Sbjct: 231 E-----HRAAFDAMNRELG--LPIAPTGPGEYLPRFASEL 263
>gi|397774847|ref|YP_006542393.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|397683940|gb|AFO58317.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
Length = 329
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 112/235 (47%), Gaps = 24/235 (10%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
++C +C +V D +T+C++CGLV+ +D EWR F D + RVG P
Sbjct: 33 AHCPECN--GRLVADDEHAETVCADCGLVVAESEIDRGPEWRAFDAAERD-EKSRVGAPT 89
Query: 64 NPLLSGGGLSTVIA--KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFK 111
+ GLST I A G T L S K+Q R+S +RNL QA
Sbjct: 90 TNMRHDQGLSTNIGWQDKDAYGQT-LSSRQREKMQRLRTWNERFRTRNSR-ERNLKQALG 147
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
I M+ LGL +++ A+ IY++ + L GR+ E + A LY A RQ PR++ E
Sbjct: 148 EIDRMASALGLPDDVRETASVIYRRALEADLLPGRSIEGVATASLYAAARQAGTPRSLDE 207
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQ 226
+V+ K E+ R ++V+ L +E+ Y+ RF S+L + ++
Sbjct: 208 ISAVSR-VDKAEVARTYRYVVREL------GLEVQPADPESYVPRFASDLDLADE 255
>gi|345004538|ref|YP_004807391.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344320164|gb|AEN05018.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 330
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 123/248 (49%), Gaps = 20/248 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + D G+T+C +CGLV++ S+D EWR F + D + RVG P
Sbjct: 35 CPECS--GSLATDTEHGETVCQDCGLVVDEDSIDRGPEWRAFDSREKD-EKSRVGAPTTN 91
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISA 115
++ GLST I LS S + R +RNL QA I
Sbjct: 92 MMHDKGLSTNIGWQDKDAYGNQLSASQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 151
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL ++++ A+ IY++ + L GR+ E + A LY A R+ PR++ E +V
Sbjct: 152 MASALGLPESVRETASVIYRRALGEDLLPGRSIEGVSTAALYAAARKAGTPRSLDEISAV 211
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ K EI R ++V+ L+ +E+ Y+ RF S+LG++++A + A++ +
Sbjct: 212 SR-VEKDEIARTYRYVVRELK------LEIQPADPEQYVPRFASDLGLSDEAERRARQLL 264
Query: 236 QKSEDLDI 243
Q +++ ++
Sbjct: 265 QTAKEQEV 272
>gi|432329785|ref|YP_007247928.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanoregula formicicum SMSP]
gi|432136494|gb|AGB01421.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanoregula formicicum SMSP]
Length = 336
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 124/255 (48%), Gaps = 27/255 (10%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VR 58
++ C +C ++V D+ + +C CGLV++ +D EWR F DHD R
Sbjct: 37 ETVCPECG-GRQLVHDYERAELVCQSCGLVIDDDFIDRGPEWRAF-----DHDQRMKRSR 90
Query: 59 VGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQ 108
VG P+ + GLST+I +S L K Q R S+ +RNL
Sbjct: 91 VGAPMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAF 150
Query: 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT 168
A + M+ LGL +++ A +Y+ D+ +RGR+ E + AA LY ACRQ + PRT
Sbjct: 151 ALSELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRT 210
Query: 169 VKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAV 228
+ E V+ ++KEIGR FI + L +++ DY+ RFCS L + +
Sbjct: 211 LDEIAEVSR-VSRKEIGRTYRFISREL------GLKLLPTSPIDYVPRFCSGLTLKGEVQ 263
Query: 229 KAAQEAVQKSEDLDI 243
A E ++++ + ++
Sbjct: 264 SRAVEILRQAGEREL 278
>gi|448343629|ref|ZP_21532552.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|445622685|gb|ELY76131.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 329
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 112/236 (47%), Gaps = 26/236 (11%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
++C +C +V D +T+C++CGLV+ +D EWR F D + RVG P
Sbjct: 33 AHCPECN--GRLVADDEHAETVCADCGLVVAESEIDRGPEWRAFDAAERD-EKSRVGAPT 89
Query: 64 NPLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAF 110
+ GLST I K G S L S K+Q R+S +RNL QA
Sbjct: 90 TNMRHDQGLSTNIGWQDKDAYGQS--LSSRQREKMQRLRTWNERFRTRNSR-ERNLKQAL 146
Query: 111 KSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVK 170
I M+ LGL +++ A+ IY++ + L GR+ E + A LY A RQ PR++
Sbjct: 147 GEIDRMASALGLPDDVRETASVIYRRALEDDLLPGRSIEGVATASLYAAARQAGTPRSLD 206
Query: 171 EFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQ 226
E +V+ K E+ R ++V+ L +E+ Y+ RF S+L + ++
Sbjct: 207 EISAVSR-VDKAEVARTYRYVVREL------GLEVQPADPESYVPRFASDLDLADE 255
>gi|448358436|ref|ZP_21547118.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|445646069|gb|ELY99061.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 352
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 122/251 (48%), Gaps = 26/251 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D +T+C++CGLV++ +D EWR F D + RVG P
Sbjct: 58 CPECD--GRLMSDAEHAETVCADCGLVVQEGEIDRGPEWRAFDAAEKD-EKSRVGAPTTN 114
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 115 MMHDQGLSTNIGWQDKDAYGKS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 171
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ ++ L GR+ E + A LY + RQ PR++ E
Sbjct: 172 IDRMASALGLPDNVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAGTPRSLDEI 231
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ K EI R ++++ L +E+ Y+ RF S+L ++++ + A+
Sbjct: 232 AGVSR-VEKDEIARTYRYVIREL------GLEVKPADPVSYVPRFASDLDLSDETERRAR 284
Query: 233 EAVQKSEDLDI 243
+ ++ +++ I
Sbjct: 285 QLLETAKESGI 295
>gi|154151850|ref|YP_001405468.1| transcription initiation factor IIB [Methanoregula boonei 6A8]
gi|189029854|sp|A7IAR4.1|TF2B_METB6 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|154000402|gb|ABS56825.1| Transcription factor TFIIB, cyclin-related [Methanoregula boonei
6A8]
Length = 334
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 124/255 (48%), Gaps = 27/255 (10%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VR 58
++ C +C ++V D+ + +C CGLV++ +D EWR F DHD R
Sbjct: 35 ETVCPECG-GRQLVHDYERAELVCQSCGLVIDDDFIDRGPEWRAF-----DHDQRMKRSR 88
Query: 59 VGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQ 108
VG P+ + GLST+I +S L K Q R S+ +RNL
Sbjct: 89 VGAPMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAF 148
Query: 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT 168
A + M+ LGL +++ A +Y+ D+ +RGR+ E + AA LY ACRQ + PRT
Sbjct: 149 ALSELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRT 208
Query: 169 VKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAV 228
+ E V+ ++KEIGR FI + L +++ DY+ RFCS L + +
Sbjct: 209 LDEIAEVSR-VSRKEIGRTYRFISREL------GLKLLPTSPIDYVPRFCSGLTLKGEVQ 261
Query: 229 KAAQEAVQKSEDLDI 243
A E ++++ + ++
Sbjct: 262 SRAVEILRQAGEREL 276
>gi|409721273|ref|ZP_11269480.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
gi|448722199|ref|ZP_21704737.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
gi|445789910|gb|EMA40583.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
Length = 284
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 111/232 (47%), Gaps = 26/232 (11%)
Query: 20 SAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKP 79
S +T C+ CGLV+ A ++D EWR FA+ D R G PL GLST I
Sbjct: 17 SGDETFCTSCGLVVAADNIDRGPEWRSFAD---GPDRKRTGAPLTRSRHDRGLSTEI--- 70
Query: 80 TAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISAMSDRLGLVTTIKDR 129
G + L+G +L AR +S +RN + AF I + LGL T++DR
Sbjct: 71 ---GRSIRLTGRKRRLFARLRRQHNRARIASKAERNRVYAFTEIRRLVGALGLPETVRDR 127
Query: 130 ANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKE 189
A +++ +++ LRGR+ E AA +Y CR E RT+ E A ++ E+ A +
Sbjct: 128 ACVLFESAQNEDLLRGRSLEGFAAAAVYAVCRTEGLSRTIAEVRDAAKA-SRGELVAAYD 186
Query: 190 FIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDL 241
+ + L + G I ++YL RF S L ++ A E V ++E L
Sbjct: 187 ALNREL------GLPTGPIDPAEYLPRFASLLDVSTAVEARAHELVDEAESL 232
>gi|397772740|ref|YP_006540286.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|397681833|gb|AFO56210.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
Length = 324
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 123/249 (49%), Gaps = 23/249 (9%)
Query: 7 ADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
A+C T + D G+ C+ECGLVL+A ++D EW +E D RVG P++
Sbjct: 28 AECPECTGSIRHDAEHGERTCTECGLVLDADAIDYGPEWLCLDDE---EDRRRVGPPVSS 84
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSG----------SLGKLQARSSHPDRNLIQAFKSISA 115
+ GLST I +S + + + + +RNL QAF I
Sbjct: 85 IKHDRGLSTTIGWRDEDAYGNRVSERKRERLRRLRTWNERYSSKNAQERNLKQAFGEIER 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL ++ A +Y++ D+ L GR+ EA+ ACLY A RQ PRT+ F SV
Sbjct: 145 MASALGLPKPCRETAGVLYRRAVDEDLLPGRSIEAMATACLYAAARQHGTPRTLVAFESV 204
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMG-TIHASDYLRRFCSNLGMTNQAVKAAQEA 234
+ K + RA ++L +E+G +E IH YL ++ S L +++ A + A+E
Sbjct: 205 SR-VEKLPVQRA----YRYLSSELGLRIEPADPIH---YLPQYASALEVSDDAERLAREI 256
Query: 235 VQKSEDLDI 243
++ ++ D+
Sbjct: 257 LEAAKARDL 265
>gi|222479934|ref|YP_002566171.1| Zinc finger TFIIB-type domain protein [Halorubrum lacusprofundi
ATCC 49239]
gi|222452836|gb|ACM57101.1| Zinc finger TFIIB-type domain protein [Halorubrum lacusprofundi
ATCC 49239]
Length = 333
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 122/240 (50%), Gaps = 24/240 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP-VRVGGPLN 64
C +C+ ++ D G+T+CSECGLV+E SVD EWR F +SS+ D RVG P
Sbjct: 39 CPECE--GNLITDTEHGETVCSECGLVVEQDSVDRGPEWRAF--DSSERDSKSRVGAPTT 94
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLG-----------KLQARSSHPDRNLIQAFKSI 113
++ GLST I + LS + + R S +RNL QA I
Sbjct: 95 NMMHDKGLSTNIGWQDKDAYGKSLSSRQRQRMQRLRTWNERFRTRDSK-ERNLKQALGEI 153
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M+ LGL +++ A+ IY++ + L GR+ E + A LY A RQ PR++ E
Sbjct: 154 DRMASALGLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYAAARQAGNPRSLDEIS 213
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
+V+ K E+ R ++++ L+ E+ Q + G+ Y+ RF S LG++ + + A+E
Sbjct: 214 AVSR-VDKMELTRTYRYVIRELKLEI-QPADPGS-----YVPRFVSRLGLSEETQRVARE 266
>gi|55379386|ref|YP_137236.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448648697|ref|ZP_21679762.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|55232111|gb|AAV47530.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445774441|gb|EMA25457.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
Length = 286
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 106/222 (47%), Gaps = 13/222 (5%)
Query: 23 DTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTA- 81
+++C CGLV+ ++D EWR F E D D R G PL GLST I + T
Sbjct: 21 ESVCGSCGLVVGEDAIDPGPEWRSF--EDDDTDRARTGAPLTRSRHDRGLSTKIGRSTRL 78
Query: 82 GGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVE 138
G L + R SS +RN + AF I + + L I+DRA +++ +
Sbjct: 79 KGRKRRQFARLRREHNRAQISSKRERNKVYAFTEIRRIISSMALSDAIRDRACVLFESAQ 138
Query: 139 DQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198
++ L+GR E AA +Y CR E RTV E C+VA T+ E+ A + + + L
Sbjct: 139 NEDLLQGRTLEGFAAAAIYATCRTEGVARTVDELCTVAKA-TQAELRAAYDALNREL--- 194
Query: 199 MGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
+ G I +Y+ RF + L + + A++ V +++D
Sbjct: 195 ---GLPTGPIDPREYVPRFATTLDLPTAVRQRAEQLVDEAQD 233
Score = 37.4 bits (85), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 120 LGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQEN 164
L L T ++ RA ++ + +D+ + GRN + AACLY A ++++
Sbjct: 214 LDLPTAVRQRAEQLVDEAQDRGLVSGRNPAGVAAACLYTAAQEQD 258
>gi|289583194|ref|YP_003481660.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448283340|ref|ZP_21474616.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|289532747|gb|ADD07098.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445574256|gb|ELY28759.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
Length = 349
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 122/251 (48%), Gaps = 26/251 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D +T+C++CGLV++ +D EWR F D + RVG P
Sbjct: 55 CPECD--GRLMSDTEHAETVCADCGLVVQEGEIDRGPEWRAFDAAEKD-EKSRVGAPTTN 111
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 112 MMHDQGLSTNIGWQDKDAYGRS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 168
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ ++ L GR+ E + A LY + RQ PR++ E
Sbjct: 169 IDRMASALGLPDNVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAGTPRSLDEI 228
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ K EI R ++++ L +E+ Y+ RF S+L ++++ + A+
Sbjct: 229 AGVSR-VEKDEIARTYRYVIREL------GLEVQPADPVSYVPRFASDLDLSDETERRAR 281
Query: 233 EAVQKSEDLDI 243
+ ++ +++ I
Sbjct: 282 QLLETAKESGI 292
>gi|448340358|ref|ZP_21529331.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|445630664|gb|ELY83925.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 324
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 122/249 (48%), Gaps = 24/249 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + D G+ C+ECGLVL+A ++D EW +E D RVG P++
Sbjct: 30 CPECS--GSIRHDAEHGERTCTECGLVLDADAIDYGPEWLCLDDEE---DRRRVGPPVSS 84
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSG----------SLGKLQARSSHPDRNLIQAFKSISA 115
+ GLST I +S + + + + +RNL QAF I
Sbjct: 85 IKHDRGLSTTIGWRDEDAYGNRVSERKRERLRRLRTWNERYSSKNAQERNLKQAFGEIER 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL ++ A +Y++ D+ L GR+ EA+ ACLY A RQ PRT+ F SV
Sbjct: 145 MASALGLPKPCRETAGVLYRRAVDEDLLPGRSIEAMATACLYAAARQHGTPRTLVAFESV 204
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMG-TIHASDYLRRFCSNLGMTNQAVKAAQEA 234
+ K + RA ++L +E+G +E IH YL ++ S L +++ A + A+E
Sbjct: 205 SR-VEKLPVQRA----YRYLSSELGLRIEPADPIH---YLPQYASALEVSDDAERLAREI 256
Query: 235 VQKSEDLDI 243
++ ++ D+
Sbjct: 257 LEAAKAHDL 265
>gi|407464509|ref|YP_006775391.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407047697|gb|AFS82449.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 302
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 121/248 (48%), Gaps = 20/248 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C C + T +V D + G+ C +CG V+ + EWR F+NE + R G P +
Sbjct: 11 CPRCGKGT-LVTDANTGENFCGKCGFVITDKVEESGPEWRSFSNEGENKS--RAGVPTSL 67
Query: 66 LLSGGGLSTVIAK----PTAGGSTELLSGSLGKLQARSSHP------DRNLIQAFKSISA 115
+ GL+TVI T T + ++ +L+ S DRN QAF +
Sbjct: 68 AMHDMGLATVINPQNRDATGKPLTAAMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDR 127
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
+ D+L + ++ ++A IY+K ++ +RGR+ A++A+ LY ACR PRT+K+
Sbjct: 128 LKDKLAVGDSVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDIGQA 187
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+N +K+I R +++ L +++M + + R S G++ + + A + +
Sbjct: 188 SN-IKRKDIARCYRLLLREL------NLKMPVVDPVKCISRIASKAGLSEKTKRKATKIL 240
Query: 236 QKSEDLDI 243
Q +E+ I
Sbjct: 241 QTAEEQKI 248
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%)
Query: 106 LIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENK 165
++ K IS ++ + GL K +A +I + E+QK G++ + AA LY+AC +
Sbjct: 212 VVDPVKCISRIASKAGLSEKTKRKATKILQTAEEQKISAGKDPMGLAAAALYVACVTNGE 271
Query: 166 PRTVKEFCSVANGT 179
+T ++ A T
Sbjct: 272 NKTQRDVAEAAGVT 285
>gi|330926698|ref|XP_003301569.1| hypothetical protein PTT_13105 [Pyrenophora teres f. teres 0-1]
gi|311323527|gb|EFQ90325.1| hypothetical protein PTT_13105 [Pyrenophora teres f. teres 0-1]
Length = 357
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 102/204 (50%), Gaps = 21/204 (10%)
Query: 6 CADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C DCK +V + SAGDTIC CG VL ++D + DP R+G N
Sbjct: 38 CPDCKENPPNLVEEFSAGDTICGSCGRVLAERTID---------THQGNDDPSRIGDAAN 88
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRN--LIQAFKSISAMSDRLGL 122
PLL G L T I G LS + +S+H N L A+ I+A+ D +
Sbjct: 89 PLLHGSQLQTEIGFGDGGMRVRDLS----RAHNKSNHDKVNKALQAAYGQITALCDSQNI 144
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+ A ++K +D K +G++Q+AI+A C++IACR+ ++ R+ +E + N +KK
Sbjct: 145 SRPTAETAKMLFKMTDDAKLFKGKSQDAIIAGCIFIACRKHDQQRSFREIFKMTN-VSKK 203
Query: 183 EIGRAKEFIVKHLEAEMGQSVEMG 206
E+GR K LEA + +S G
Sbjct: 204 EVGR----TFKVLEAFIQKSQNNG 223
>gi|448638606|ref|ZP_21676456.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445763385|gb|EMA14584.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
Length = 286
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 106/222 (47%), Gaps = 13/222 (5%)
Query: 23 DTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTA- 81
+++C CGLV+ ++D EWR F E D D R G PL GLST I + T
Sbjct: 21 ESVCGSCGLVVGEDAIDPGPEWRSF--EDDDTDRARTGAPLTRSRHDRGLSTKIGRSTRL 78
Query: 82 GGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVE 138
G L + R SS +RN + AF I + + L I+DRA +++ +
Sbjct: 79 KGRKRRQFARLRREHNRAQISSKRERNKVYAFTEIRRIISSMALSDAIRDRACVLFESAQ 138
Query: 139 DQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198
++ L+GR E AA +Y CR E RTV E C+VA T+ E+ A + + + L
Sbjct: 139 NEDLLQGRTLEGFAAAAIYATCRTEGVARTVDELCTVAKA-TQAELRAAYDALNREL--- 194
Query: 199 MGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
+ G I +Y+ RF + L + + A++ V +++D
Sbjct: 195 ---GLPTGPIDPREYVPRFATTLDLPTAVRQRAEQLVDEAQD 233
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 120 LGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179
L L T ++ RA ++ + +D+ + GRN + AACLY A ++++ T E A+ T
Sbjct: 214 LDLPTAVRQRAEQLVDEAQDRGLVSGRNPAGVAAACLYTAAQEQDVALTQAEAAETADVT 273
>gi|448739674|ref|ZP_21721686.1| Transcription factor TFIIB cyclin-related protein [Halococcus
thailandensis JCM 13552]
gi|445799293|gb|EMA49674.1| Transcription factor TFIIB cyclin-related protein [Halococcus
thailandensis JCM 13552]
Length = 355
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 123/250 (49%), Gaps = 24/250 (9%)
Query: 2 ADSYCADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
++ C +C RL E D + G+T C+ECGLV+ +D EWR F + D R G
Sbjct: 51 SERVCPECGGRLVE---DETHGETTCTECGLVVSTDEIDHGPEWRAFDSAERDRKK-RTG 106
Query: 61 GPLNPLLSGGGLSTVIA--KPTAGGST---------ELLSGSLGKLQARSSHPDRNLIQA 109
P ++ GLS+ I A G+T + L + + R S +RNL QA
Sbjct: 107 APTTKMMHDKGLSSQIGWQNKDAYGNTLSARKRQRMQRLRTWDERFRTRDSK-ERNLKQA 165
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
I M+ LG+ +++ A+ IY++ + L GR+ E + A LY RQ PR+V
Sbjct: 166 LGEIERMASALGVPKDVRETASVIYRRALSEDLLPGRSIEGVSTAALYAGIRQMGLPRSV 225
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVK 229
+E +V+ + E RA +I + L+ +E+G + Y+ RF S+L ++ + +
Sbjct: 226 EEVGAVSR-VDEMEFKRAYRYINQELD------LEIGPPNPEQYVSRFASDLDVSEETER 278
Query: 230 AAQEAVQKSE 239
A++ ++ +E
Sbjct: 279 RARDLLETAE 288
>gi|448370421|ref|ZP_21556593.1| Transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
gi|445649168|gb|ELZ02110.1| Transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
Length = 323
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 108/240 (45%), Gaps = 19/240 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ + + + C CGL++E +D EWR F N + RVG P
Sbjct: 29 CPECES-SSLTRSPDESEISCEACGLIIEEEVIDRGPEWRAF-NAAERDSKSRVGAPTTQ 86
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A
Sbjct: 87 TMHDKGLTTTIDWKNKDAYGRSLSSDKRSQMNRLRKWQERIRTKDAGERNLQFALSETDR 146
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ +Y++ D+ +RGR+ E + + LY ACR E PR++ E +V
Sbjct: 147 MASALGVPRSVREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEVAAV 206
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ + EIGR +I + L +EM ++ Y+ RFCS L + + A E +
Sbjct: 207 SR-VNRMEIGRTYRYISQEL------GLEMEPVNPKKYVPRFCSELDLPEEVQAKANEII 259
>gi|353237099|emb|CCA69080.1| related to RRS1-regulator of ribosome biogenesis [Piriformospora
indica DSM 11827]
Length = 668
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 99/183 (54%), Gaps = 10/183 (5%)
Query: 31 LVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSG-GGLSTVIA-KPTAGGSTELL 88
LV E+ D+ + FANE D DP RVGGP NP+ G LST I+ + G + L
Sbjct: 335 LVTESSIPDQNT----FANEEGD-DPSRVGGPQNPIYEGLDSLSTSISFRDGNSGHSREL 389
Query: 89 SGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQ 148
+ +L S R+L F+ I +M D+ L ++ D A +Y++ E++K LRG+
Sbjct: 390 QRAAARLSNDKSQ--RSLTVVFEQIQSMCDQYSLPRSVSDTAKMLYRRTEEEKLLRGKQP 447
Query: 149 EAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTI 208
+AIVAACL+IACRQ PRT KE + N KK+IG+ + + + G + +
Sbjct: 448 DAIVAACLFIACRQAAVPRTFKEIVELTN-VPKKQIGQCYKALERAFNLAPGATAANPSG 506
Query: 209 HAS 211
H+S
Sbjct: 507 HSS 509
>gi|433591402|ref|YP_007280898.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448332920|ref|ZP_21522140.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|433306182|gb|AGB31994.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445624764|gb|ELY78139.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
Length = 324
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 127/252 (50%), Gaps = 25/252 (9%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
S C +C + +D G+ C++CGLVL+A +D EWR F ++ D RVG P+
Sbjct: 28 SECPEC--TGRIAYDEEHGERACADCGLVLDADGIDYGPEWRRFDDDGDDR--CRVGAPV 83
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLG-----------KLQARSSHPDRNLIQAFKS 112
GLST I +SG + ++++ +RNL QA
Sbjct: 84 TARKHDKGLSTTIGWQDEDAYGNRISGRKRRQLQRLRTWNERFTSKNAR-ERNLKQALGE 142
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL ++ A IY++ +++ L GR+ EA+ ACLY A RQ+ PRT+ F
Sbjct: 143 IERMASALGLPEPCRETAGVIYRRAVEEELLPGRSIEAMATACLYAAARQQGTPRTLVAF 202
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMG-TIHASDYLRRFCSNLGMTNQAVKAA 231
SV+ K I RA ++L +E+G +E IH YL ++ S LG+ ++ + A
Sbjct: 203 ASVSR-VEKLPIQRA----YRYLSSELGLKIEPADPIH---YLPQYASELGVGDETERLA 254
Query: 232 QEAVQKSEDLDI 243
++ ++ ++D D+
Sbjct: 255 RKILEAAKDRDL 266
>gi|313127213|ref|YP_004037483.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448288315|ref|ZP_21479515.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293578|gb|ADQ68038.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445569834|gb|ELY24404.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 327
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 107/225 (47%), Gaps = 18/225 (8%)
Query: 22 GDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA---K 78
G+ I G+V+E +D EWR F N S RVG P + GL+T I K
Sbjct: 48 GELIHEPTGIVVEEEQIDPGPEWRAF-NHSERQSKSRVGAPTTQTMHDKGLTTTIDWKDK 106
Query: 79 PTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRAN 131
G S S L K Q R D RNL A I M+ LG+ ++++ A+
Sbjct: 107 DAYGRSISSRKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 166
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
IY++ ++ +RGR+ E + + LY ACR+E PR+++E V+ +KEIGR +I
Sbjct: 167 VIYRRALNEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISDVSR-VERKEIGRTYRYI 225
Query: 192 VKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQ 236
+ L +EM + Y+ RF S L ++ + A E ++
Sbjct: 226 SQEL------GLEMKPVDPKKYVPRFSSELDLSKEVQSKANEIIE 264
>gi|448336699|ref|ZP_21525792.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445628249|gb|ELY81558.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
Length = 324
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 124/249 (49%), Gaps = 23/249 (9%)
Query: 7 ADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
A+C T + D G+ C+ECGLVL+A ++D EW +E D RVG P++
Sbjct: 28 AECPECTGSIRHDAEHGERTCAECGLVLDADAIDYGPEWLCLDDE---EDRRRVGPPVSS 84
Query: 66 LLSGGGLSTVIAKPTAGGSTELLS----------GSLGKLQARSSHPDRNLIQAFKSISA 115
+ GLST I +S + + + + +RNL QAF I
Sbjct: 85 VKHDRGLSTTIGWRNEDAYGNRVSERKRDRLRRLRTWNERFSSKNAQERNLKQAFGEIER 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL ++ A +Y++ D++ L GR+ EA+ ACLY A RQ PRT+ F SV
Sbjct: 145 MASALGLPEPCRETAGVLYRRAVDEELLPGRSIEAMATACLYAAARQHGTPRTLVAFESV 204
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMG-TIHASDYLRRFCSNLGMTNQAVKAAQEA 234
+ K + RA ++L +E+G +E IH YL ++ S L +++ A + A+E
Sbjct: 205 SR-VEKLPVQRA----YRYLSSELGLRIEPADPIH---YLPQYASALEVSDDAERLAREI 256
Query: 235 VQKSEDLDI 243
++ ++ D+
Sbjct: 257 LEAAKARDL 265
>gi|407462158|ref|YP_006773475.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407045780|gb|AFS80533.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 302
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 121/248 (48%), Gaps = 20/248 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C C + T +V D + G+ C +CG V+ + EWR F+NE + R G P +
Sbjct: 11 CPRCGKGT-LVTDANTGENFCGKCGFVITDKVEESGPEWRSFSNEGENKS--RAGVPTSL 67
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLG----KLQARSSHP------DRNLIQAFKSISA 115
+ GL+TVI + + L+ S+ +L+ S DRN QAF +
Sbjct: 68 AMHDMGLATVINPQNRDATGKPLTASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDR 127
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
+ D+L + + ++A IY+K ++ +RGR+ A++A+ LY ACR PRT+K+
Sbjct: 128 LKDKLAVGDAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDIGQA 187
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+N +K+I R +++ L +++M + + R S G++ + + A + +
Sbjct: 188 SN-IKRKDIARCYRLLLREL------NLKMPVVDPIKCISRIASKAGLSEKTKRKATKIL 240
Query: 236 QKSEDLDI 243
Q +E+ I
Sbjct: 241 QTAEENKI 248
Score = 37.0 bits (84), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%)
Query: 106 LIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENK 165
++ K IS ++ + GL K +A +I + E+ K G++ + AA LY+AC +
Sbjct: 212 VVDPIKCISRIASKAGLSEKTKRKATKILQTAEENKISAGKDPMGLAAAALYVACVTNGE 271
Query: 166 PRTVKEFCSVANGT 179
+T ++ A T
Sbjct: 272 NKTQRDVAEAAGVT 285
>gi|386875527|ref|ZP_10117689.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386806627|gb|EIJ66084.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 302
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 121/248 (48%), Gaps = 20/248 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C C + T +V D + G+ C +CG V+ + EWR F+NE + R G P +
Sbjct: 11 CPRCGQGT-LVTDANTGENFCGKCGFVITDKVEESGPEWRSFSNEGENKS--RAGVPTSL 67
Query: 66 LLSGGGLSTVIAK----PTAGGSTELLSGSLGKLQARSSHP------DRNLIQAFKSISA 115
+ GL+TVI T T + ++ +L+ S DRN QAF +
Sbjct: 68 AMHDMGLATVINPQNRDATGKPLTAAMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDR 127
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
+ D+L + ++ ++A IY+K ++ +RGR+ A++A+ LY ACR PRT+K+
Sbjct: 128 LKDKLAVGDSVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDIGQA 187
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+N +K+I R +++ L +++M + + R S G++ + + A + +
Sbjct: 188 SN-IKRKDIARCYRLLLREL------NLKMPVVDPVKCISRIASKAGLSEKTKRKATKIL 240
Query: 236 QKSEDLDI 243
Q +E+ I
Sbjct: 241 QTAEEQKI 248
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%)
Query: 106 LIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENK 165
++ K IS ++ + GL K +A +I + E+QK G++ + AA LY+AC +
Sbjct: 212 VVDPVKCISRIASKAGLSEKTKRKATKILQTAEEQKISAGKDPMGLAAAALYVACVTNGE 271
Query: 166 PRTVKEFCSVANGT 179
+T ++ A T
Sbjct: 272 NKTQRDVAEAAGVT 285
>gi|448726015|ref|ZP_21708442.1| Transcription factor TFIIB cyclin-related protein [Halococcus
morrhuae DSM 1307]
gi|445797034|gb|EMA47518.1| Transcription factor TFIIB cyclin-related protein [Halococcus
morrhuae DSM 1307]
Length = 334
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 123/250 (49%), Gaps = 24/250 (9%)
Query: 2 ADSYCADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
++ C +C RL E D + G+T C+ECGLV+ +D EWR F + D R G
Sbjct: 28 SERVCPECGGRLAE---DEAHGETTCTECGLVVSTDEIDHGPEWRAFDSAERDRKK-RTG 83
Query: 61 GPLNPLLSGGGLSTVIA--KPTAGGST---------ELLSGSLGKLQARSSHPDRNLIQA 109
P ++ GLS+ I A G+T + L + + R S +RNL QA
Sbjct: 84 APTTKMMHDKGLSSQIGWQNKDAYGNTLSARKRQRMQRLRTWDERFRTRDSK-ERNLKQA 142
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
I M+ LG+ +++ A+ IY++ + L GR+ E + A LY RQ PR+V
Sbjct: 143 LGEIERMASALGVPKDVRETASVIYRRALSEDLLPGRSIEGVSTAALYAGIRQMGLPRSV 202
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVK 229
+E +V+ + E RA +I + L+ +E+G + Y+ RF S+L ++ + +
Sbjct: 203 EEVGAVSR-VDEMEFKRAYRYINQELD------LEIGPPNPKQYVSRFASDLDVSEETER 255
Query: 230 AAQEAVQKSE 239
A++ ++ +E
Sbjct: 256 RARDLLETAE 265
>gi|448419740|ref|ZP_21580584.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445674654|gb|ELZ27191.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 334
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 107/225 (47%), Gaps = 18/225 (8%)
Query: 22 GDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA---K 78
G+ I G+V+E +D EWR F N S RVG P + GL+T I K
Sbjct: 55 GELIHEPTGIVVEEEQIDPGPEWRAF-NHSERQSKSRVGAPTTQTMHDKGLTTTIDWKDK 113
Query: 79 PTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRAN 131
G S S L K Q R D RNL A I M+ LG+ ++++ A+
Sbjct: 114 DAYGRSISSRKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 173
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
IY++ ++ +RGR+ E + + LY ACR+E PR+++E V+ +KEIGR +I
Sbjct: 174 VIYRRALNEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISDVSR-VERKEIGRTYRYI 232
Query: 192 VKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQ 236
+ L +EM + Y+ RF S L ++ + A E ++
Sbjct: 233 SQEL------GLEMKPVDPKKYVPRFSSELELSKEVQSKANEIIE 271
>gi|393796884|ref|ZP_10380248.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 302
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 123/249 (49%), Gaps = 22/249 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETS-EWRIFANESSDHDPVRVGGPLN 64
C C + T +V D + + C +CG V+ VDE+ EWR F+NE + R G P +
Sbjct: 11 CPRCGQGT-LVTDATTAENFCGKCGFVI-TEKVDESGPEWRSFSNEGENKS--RAGVPTS 66
Query: 65 PLLSGGGLSTVIAK----PTAGGSTELLSGSLGKLQARSSHP------DRNLIQAFKSIS 114
+ GL+TVI T T + ++ +L+ S DRN QAF +
Sbjct: 67 LAMHDMGLATVINPQNRDATGKPLTSAMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELD 126
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
+ D+L + + ++A IY+K ++ +RGR+ A++A+ LY ACR PRT+K+
Sbjct: 127 RLKDKLAVGDAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDIGQ 186
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
+N +K+I R +++ L +++M + + R S G++ + +AA +
Sbjct: 187 ASN-IKRKDIARCYRLLLREL------NLKMPVVDPVKCISRIASKAGLSEKTKRAATKI 239
Query: 235 VQKSEDLDI 243
+Q +E+ I
Sbjct: 240 LQTAEEQKI 248
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 106 LIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENK 165
++ K IS ++ + GL K A +I + E+QK G++ + AA LY+AC +
Sbjct: 212 VVDPVKCISRIASKAGLSEKTKRAATKILQTAEEQKISAGKDPMGLAAAALYVACVTNGE 271
Query: 166 PRTVKEFCSVANGT 179
+T ++ A T
Sbjct: 272 SKTQRDVAEAAGVT 285
>gi|161528132|ref|YP_001581958.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160339433|gb|ABX12520.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 302
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 120/248 (48%), Gaps = 20/248 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C C + T +V D + G+ C CG V+ + EWR F+NE + R G P +
Sbjct: 11 CPRCGKGT-LVTDPNTGENFCGACGFVITEKVEESGPEWRSFSNEGENKS--RAGVPTSL 67
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLG----KLQARSSHP------DRNLIQAFKSISA 115
+ GL+TVI + + L+ S+ +L+ S DRN QAF +
Sbjct: 68 AMHDMGLATVINPQNRDATGKPLTASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDR 127
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
+ D+L + + ++A IY+K ++ +RGR+ A++A+ LY ACR PRT+K+
Sbjct: 128 LKDKLAVGDAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDIGQA 187
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+N +K+I R +++ L +++M + + R S G++ + + A + +
Sbjct: 188 SN-IKRKDIARCYRLLLREL------NLKMPVVDPIKCISRIASKAGLSEKTKRKATKIL 240
Query: 236 QKSEDLDI 243
Q +E+ I
Sbjct: 241 QTAEENKI 248
Score = 37.0 bits (84), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%)
Query: 106 LIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENK 165
++ K IS ++ + GL K +A +I + E+ K G++ + AA LY+AC +
Sbjct: 212 VVDPIKCISRIASKAGLSEKTKRKATKILQTAEENKISAGKDPMGLAAAALYVACVTNGE 271
Query: 166 PRTVKEFCSVANGT 179
+T ++ A T
Sbjct: 272 NKTQRDVAEAAGVT 285
>gi|452206067|ref|YP_007486189.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452082167|emb|CCQ35419.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 342
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 98/208 (47%), Gaps = 20/208 (9%)
Query: 25 ICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGS 84
+C++CGLV+E +D EWR F D RVG P+ +L GLST I
Sbjct: 64 VCTDCGLVVEDQRIDAGPEWRAFDAAERDKRS-RVGAPMTEMLHDKGLSTTIGFDKTDAY 122
Query: 85 TELLSGSLG-----------KLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEI 133
L G + + ++H DRNL A I M+ LGL I++ A+ I
Sbjct: 123 GNALGGRKRRQLKRLRTWNRRSKTENAH-DRNLRHALGEIDRMASALGLPEPIRETASVI 181
Query: 134 YKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
Y++ D+ LRGR+ E + AA LY A R + R++ E +V+ EI RA +I +
Sbjct: 182 YRRALDEDLLRGRSIEGMAAASLYAASRLDGVARSIDEIATVSR-VDDLEIKRAYRYIDR 240
Query: 194 HLEAEMGQSVEMGTIHASDYLRRFCSNL 221
L +E H ++YL RF S L
Sbjct: 241 EL------GLETPPAHPNEYLGRFASEL 262
>gi|448332083|ref|ZP_21521331.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|445627928|gb|ELY81242.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
Length = 354
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 123/272 (45%), Gaps = 51/272 (18%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
+C +C +V D +T+C++CGLV+E +D EWR F D + RVG P
Sbjct: 29 HCPECG--GRLVSDDEHAETVCTDCGLVVEEDEIDRGPEWRAFDAAEKD-EKSRVGAPTT 85
Query: 65 PLLSGGGLSTVIA-------KPTAGGST------ELLSGSLG------------------ 93
++ GLST I K G T + LS ++G
Sbjct: 86 NMMHDQGLSTNIGWQXEKDEKSRVGAPTTNMMHDQGLSTNIGWQDKDAYGRSLSSRQRQK 145
Query: 94 ---------KLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLR 144
+ + R S +RNL QA I M+ LGL +++ A+ IY++ ++ L
Sbjct: 146 MQRLRTWNERFRTRDSK-ERNLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLP 204
Query: 145 GRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVE 204
GR+ E + A LY A RQ PR++ E +V+ K E+ R +I++ L +E
Sbjct: 205 GRSIEGVATASLYAAARQAGTPRSLDEISAVSR-VEKMELTRTYRYIIREL------GLE 257
Query: 205 MGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQ 236
+ Y+ RF S+L ++++ + A+E ++
Sbjct: 258 VKPADPEHYVPRFVSDLDLSDETERMARELLE 289
>gi|76803041|ref|YP_331136.1| transcription initiation factor TFB 6 [Natronomonas pharaonis DSM
2160]
gi|76558906|emb|CAI50502.2| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 329
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 108/230 (46%), Gaps = 18/230 (7%)
Query: 16 VFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTV 75
V + G+ I GLVLE +D EWR F + S RVG P + GL+T
Sbjct: 45 VVKTADGELIHEPTGLVLEDEHIDRGPEWRAFTH-SERQSKSRVGAPTTQTMHDKGLTTQ 103
Query: 76 IAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTT 125
I + +S L K Q R D RNL A I M+ LG+ +
Sbjct: 104 IDWKDKDAYGQSISSDKRSQMNRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRS 163
Query: 126 IKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIG 185
+++ A+ Y++ D+ +RGR+ E A LY ACRQE+ PR++ E VA +KEIG
Sbjct: 164 VREVASVTYRRALDEDLIRGRSIEGAATATLYAACRQESIPRSLDEVAEVAR-VEQKEIG 222
Query: 186 RAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
R ++L E+G +E+ +Y+ RFCS L ++ + +E +
Sbjct: 223 RT----YRYLSQELG--LEIKPADPKEYVPRFCSELALSEAVEQKTREII 266
>gi|448346521|ref|ZP_21535406.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445632724|gb|ELY85935.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 324
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 123/250 (49%), Gaps = 26/250 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + D G+ C+ECGLVL+A ++D EW +E D RVG P++
Sbjct: 30 CPEC--TGSIRHDAEHGERTCTECGLVLDADAIDYGPEWLCLDDE---EDRRRVGPPVSS 84
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLG-----------KLQARSSHPDRNLIQAFKSIS 114
+ GLST I +S + ++++ +RNL QAF I
Sbjct: 85 IKHDRGLSTTIGWRDEDAYGNRVSERKRERLRRLRTWNERFSSKNAQ-ERNLKQAFGEIE 143
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL ++ A +Y++ D+ L GR+ EA+ ACLY A RQ PRT+ F S
Sbjct: 144 RMASALGLPEPCRETAGVLYRRAVDEDLLPGRSIEAMATACLYAAARQHGTPRTLVAFES 203
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMG-TIHASDYLRRFCSNLGMTNQAVKAAQE 233
V+ K + RA ++L +E+G +E IH YL ++ S L +++ A + A+E
Sbjct: 204 VSR-VEKVPVQRA----YRYLSSELGLRIEPADPIH---YLPQYASALEVSDDAERLARE 255
Query: 234 AVQKSEDLDI 243
++ ++ D+
Sbjct: 256 ILEAAKARDL 265
>gi|408402853|ref|YP_006860836.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408363449|gb|AFU57179.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 292
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 102/198 (51%), Gaps = 13/198 (6%)
Query: 9 CKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLS 68
C + ++V D +G+ +CS+CGLV + +EWRIF +ES+ RVG P +
Sbjct: 2 CGKDQQLVTDLESGEIVCSKCGLVSSDRVQESRAEWRIFNSESNGRS--RVGSPSSLAYH 59
Query: 69 GGGLSTVIAKPTAGGSTELLSGSLG---------KLQARSSHP-DRNLIQAFKSISAMSD 118
GL+TVI K S L S+ ++++ P RNL+ AF + + D
Sbjct: 60 DMGLATVIGKENRDSSGHQLEPSMNASIQRLRTWDFRSQAHSPTKRNLMHAFSELGRLKD 119
Query: 119 RLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG 178
+LGL I ++ +Y+K ++ +RGR+ +I+AA +Y +CR+ RT+K+ A
Sbjct: 120 KLGLSDAIMEKTAYLYRKAHEKHLVRGRSTSSILAAAIYASCRELGASRTLKDVAK-ATD 178
Query: 179 TTKKEIGRAKEFIVKHLE 196
+K I R+ +V L+
Sbjct: 179 IKRKAISRSYRILVLELD 196
>gi|329766221|ref|ZP_08257779.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|393795806|ref|ZP_10379170.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
gi|329137280|gb|EGG41558.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 304
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 121/241 (50%), Gaps = 20/241 (8%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH-DPVRVGGPLNPLLSGGGL 72
++V D+ +G+ CS+CG V+ + EWR F + +H D R G P + + GL
Sbjct: 19 KLVTDNESGEMFCSKCGFVMSEKLQESGPEWRSFTQD--EHGDRARAGAPTSLTMHDMGL 76
Query: 73 STVIAKPTAGGSTELLSGSLGKL---------QARSSHP-DRNLIQAFKSISAMSDRLGL 122
+T+I + + LS S+ +++ P DRN QAF ++ + D+L +
Sbjct: 77 ATIINPINKDATGKPLSASMKSTIERLRTWDNRSQVHEPVDRNFRQAFSELNRLKDKLAI 136
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+ ++A IY+K D+ +RGR+ A++A+ LY ACR PR +K+ AN +K
Sbjct: 137 SDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTETPRNLKDVEQAAN-IKRK 195
Query: 183 EIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLD 242
+I R ++K L+ ++M + + R S +G+ + + A ++++++ +
Sbjct: 196 DIARCYRLLIKELD------LKMPVTDSIQCVARIASRIGIAEKTKRYAVNVLKQAQENE 249
Query: 243 I 243
+
Sbjct: 250 V 250
>gi|448454975|ref|ZP_21594377.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445814355|gb|EMA64320.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 345
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 122/273 (44%), Gaps = 53/273 (19%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C TE+V D + + +C +CGLVL+ ++D EWR F N S RVG P+
Sbjct: 25 CPECDS-TEIVTD-ADQELVCEDCGLVLDEQNIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLSGGGLSTVIA---KPTAGGS---------------------------------TELLS 89
+ GL+T I K G S +E+
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIXK 141
Query: 90 GS----LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKP 142
S L K Q R D RNL A I M+ LG+ ++++ A+ IY++ ++
Sbjct: 142 RSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDL 201
Query: 143 LRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQS 202
+RGR+ E + A LY ACRQE PR++ E V+ +KEIGR +I + L
Sbjct: 202 IRGRSIEGVSTAALYAACRQEGIPRSLDEVADVSR-VPQKEIGRTYRYISQEL------G 254
Query: 203 VEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+E+ + ++ RF S+L ++ + A E +
Sbjct: 255 LELKPVDPKQFVPRFASSLELSEEVQSKATEII 287
>gi|448739810|ref|ZP_21721814.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
gi|445798476|gb|EMA48880.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
Length = 323
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 120/251 (47%), Gaps = 21/251 (8%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
A C +C ++ D G+ C+ CGLV++ +D EWR + D RVG
Sbjct: 21 QATDTCPECG--GQLNHDSEHGERACTGCGLVVDEDEIDHGPEWRAHTQKERDQK-SRVG 77
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGS----LGKLQ-----ARSSHP-DRNLIQAF 110
P L+ GLST I+ LS + +L+ +R+ +P +RNL QAF
Sbjct: 78 APTTNLMHDKGLSTTISWQNKDAYGNALSPEKRQRMQRLRTWDERSRTRNPKERNLKQAF 137
Query: 111 KSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVK 170
I M+ LGL ++++ A IY++ + L GR+ E + A ++IA RQ N PR++
Sbjct: 138 AEIERMASALGLPQSVRETAGVIYRRAIEDGLLPGRSIEGVATAAIHIASRQANIPRSLD 197
Query: 171 EFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKA 230
V+ K I R ++ + L+ + + +YL RF S+L ++++
Sbjct: 198 TLAEVSR-VEKLSITRTYRYVTRELD------INLPPADPLEYLPRFVSDLDLSDEVEHR 250
Query: 231 AQEAVQK-SED 240
++E ++ SED
Sbjct: 251 SRELLETVSED 261
>gi|448351752|ref|ZP_21540546.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|445632312|gb|ELY85524.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
Length = 341
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 114/238 (47%), Gaps = 22/238 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D +T+C +CGLV++ +D EWR F D + RVG P
Sbjct: 47 CPECS--GRLVSDAEHAETVCEDCGLVVQEGEIDRGPEWRAFDAAEKD-EKSRVGAPTTN 103
Query: 66 LLSGGGLSTVIA---KPTAGGS--------TELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
++ GLST I K G S + L + + R S +RNL QA I
Sbjct: 104 MMHDQGLSTNIGWQDKDAYGRSLSNRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGEID 162
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ ++ L GR+ E + A LY + RQ PR++ E +
Sbjct: 163 RMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAGTPRSLDEISA 222
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ K EI R ++++ L +E+ Y+ RF S+L ++++ + A+
Sbjct: 223 VSR-VEKDEIARTYRYVIREL------GLEVQPADPVSYVPRFASDLELSDETERRAR 273
>gi|448732508|ref|ZP_21714784.1| transcription initiation factor TFB [Halococcus salifodinae DSM
8989]
gi|445804622|gb|EMA54863.1| transcription initiation factor TFB [Halococcus salifodinae DSM
8989]
Length = 342
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 122/259 (47%), Gaps = 29/259 (11%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ + + G+ +C +CGL+LE ++D EWR F N S RVG P
Sbjct: 27 CPECESAS-LTNSADQGELVCDDCGLILETDNIDRGPEWRAF-NHSERQSKSRVGAPTTQ 84
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A
Sbjct: 85 TMHDKGLTTQIGWQDKDAYGRSLSAEKRSQMNRLRKWQERVRTKDAGERNLQFALSETDR 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ ++ IY++ + +RGR+ EA+ A+ LY ACR+E PR+++E V
Sbjct: 145 MASALGVPRSVREVSSVIYRRALSEDLIRGRSIEAVAASALYAACRKEGIPRSLEEVTHV 204
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM--------------GQSVEMG--TIHASDYLRRFCS 219
A +KEIGR +I + LE M + +E+G + Y+ RFCS
Sbjct: 205 AR-VEQKEIGRTYRYIARELELGMRPVDPQKYVTYRYIARELELGMRPVDPQKYVPRFCS 263
Query: 220 NLGMTNQAVKAAQEAVQKS 238
+L ++ + A E ++ S
Sbjct: 264 SLDLSEEVQSKANEVIEAS 282
>gi|448412849|ref|ZP_21576740.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
gi|445667551|gb|ELZ20192.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
Length = 322
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 123/251 (49%), Gaps = 26/251 (10%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D C +C +V D G+T+C +CGLV+E +D EWR F + S + RVG P
Sbjct: 24 DEACPECS--GHLVVDDERGETVCEDCGLVVETDEIDRGPEWRAF-DASEKDEKSRVGAP 80
Query: 63 LNPLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQA 109
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 81 TTNMMHDKGLSTNIDWRDKDAYGNS--LSSNQRQKMQRLRKWNERFRTRDSK-ERNLKQA 137
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
I M+ LGL +++ A+ IY++ D+ L GR+ E + A +Y A RQ PR++
Sbjct: 138 LGEIDRMASALGLPENVRETASVIYRRALDENLLPGRSIEGVSTAAVYAAARQAGVPRSL 197
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVK 229
E V+ K EI R ++++ L +E+ Y+ RF S+L ++++A
Sbjct: 198 DEINEVSR-VEKSEIARTYRYVIREL------GLEVAPADPESYVPRFASSLELSDEAEH 250
Query: 230 AAQEAVQKSED 240
A++ +Q +++
Sbjct: 251 RARKLLQNAKE 261
>gi|448307033|ref|ZP_21496934.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
gi|445596580|gb|ELY50665.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
Length = 298
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 106/223 (47%), Gaps = 22/223 (9%)
Query: 23 DTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAG 82
+TIC +CGLVL ++D EWR F + D DP R G PL GLST I +
Sbjct: 23 ETICEDCGLVLAEDAIDRGPEWRSFDD---DTDPRRTGAPLTRSRHDRGLSTKIGYGSGS 79
Query: 83 GST--ELLSGSLGKLQAR----------SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRA 130
ST ++G + AR SS +RN + F I ++ L L + +++A
Sbjct: 80 DSTYSSRVTGRKRRQIARLRREHNRAQISSKAERNQVYGFTEIRRVNALLSLPESAREQA 139
Query: 131 NEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEF 190
++K + + +GR+ E AA +Y CR + PRT+ E +VA +T E+ A +
Sbjct: 140 CALFKSAQSEGLFQGRSLEGFAAAAIYATCRTRSNPRTIDEITAVARAST-DELTTAYDA 198
Query: 191 IVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
+ + L + G I + YL R+ S LG+ + A+E
Sbjct: 199 LNREL------GLPTGPIDPTQYLPRYASKLGLDTAVERRARE 235
>gi|118577046|ref|YP_876789.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
gi|118195567|gb|ABK78485.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
Length = 303
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 100/196 (51%), Gaps = 12/196 (6%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
++V D+ +G+ C++CG V+ + EWR FA++ D R G P + + GL+
Sbjct: 18 KLVTDNESGEMFCAKCGFVMTEKLQESGPEWRSFAHDEHG-DRARTGAPTSLTMHDMGLA 76
Query: 74 TVIAKPTAGGSTELLSGSLGKL---------QARSSHP-DRNLIQAFKSISAMSDRLGLV 123
T+I S L+ S+ +++ P DRN QAF ++ + D+L +
Sbjct: 77 TIINPANRDASGRPLAASMKSTIDRLRTWDNRSQVHEPVDRNYRQAFSELNRLKDKLAIS 136
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+ ++A IY+K D+ +RGR+ A++A+ LY ACR PR +K+ AN +K+
Sbjct: 137 DAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTATPRNLKDVEEAAN-IKRKD 195
Query: 184 IGRAKEFIVKHLEAEM 199
I R +VK L+ M
Sbjct: 196 IARCYRLLVKELDLRM 211
>gi|448362505|ref|ZP_21551111.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
gi|445647985|gb|ELZ00949.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
Length = 341
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 114/238 (47%), Gaps = 22/238 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D +T+C++CGLV++ +D EWR F D + RVG P
Sbjct: 47 CPECG--GRLVSDAEHAETVCTDCGLVVQEGEIDRGPEWRAFDAAEKD-EKSRVGAPTTN 103
Query: 66 LLSGGGLSTVIA---KPTAGGS--------TELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
++ GLST I K G S + L + + R S +RNL QA I
Sbjct: 104 MMHDQGLSTNIGWQDKDAYGRSLSNRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGEID 162
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ ++ L GR+ E + A LY + RQ PR++ E
Sbjct: 163 RMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAGTPRSLDEIAG 222
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ K EI R ++++ L +E+ Y+ RF S+L ++++ + A+
Sbjct: 223 VSR-VEKDEIARTYRYVIREL------GLEVQPADPVSYVPRFASDLELSDETERRAR 273
>gi|448364802|ref|ZP_21553379.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
gi|445657641|gb|ELZ10466.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
Length = 339
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 114/238 (47%), Gaps = 22/238 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D +T+C++CGLV++ +D EWR F D + RVG P
Sbjct: 45 CPECG--GRLVSDAEHAETVCTDCGLVVQEGEIDRGPEWRAFDAAEKD-EKSRVGAPTTN 101
Query: 66 LLSGGGLSTVIA---KPTAGGS--------TELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
++ GLST I K G S + L + + R S +RNL QA I
Sbjct: 102 MMHDQGLSTNIGWQDKDAYGRSLSNRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGEID 160
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ ++ L GR+ E + A LY + RQ PR++ E
Sbjct: 161 RMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAGTPRSLDEIAG 220
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ K EI R ++++ L +E+ Y+ RF S+L ++++ + A+
Sbjct: 221 VSR-VEKDEIARTYRYVIREL------GLEVQPADPVSYVPRFASDLELSDETERRAR 271
>gi|429190461|ref|YP_007176139.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|429134679|gb|AFZ71690.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
Length = 333
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 115/250 (46%), Gaps = 23/250 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + D G+ +CS+CGLV +D EWR F + + RVG P+
Sbjct: 40 CPECN--GRIRPDDDRGERVCSDCGLVSGGDEIDYGPEWRSFDEDGNSRG--RVGAPITQ 95
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSG----SLGKLQA------RSSHPDRNLIQAFKSISA 115
GLST I LS L +L+ ++ +RNL QA +
Sbjct: 96 RRHDKGLSTTIGWEDRDAYGNELSARKRSKLNRLRTWNERFTSTNSQERNLKQALGELER 155
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL ++ A IY++ D L GR+ EA+ A LY A RQ PRT F SV
Sbjct: 156 MASALGLPEPCRETAAIIYRQAVDADLLLGRSIEAVATASLYAAARQHGTPRTFSTFESV 215
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE-- 233
+ + I RA + L +++G +EM YLR+F S+LG++ + + A++
Sbjct: 216 SR-VDEPPIKRA----YRQLSSDLG--LEMAPPDPDHYLRQFTSSLGVSEETERVARDVL 268
Query: 234 AVQKSEDLDI 243
A K E L +
Sbjct: 269 AAAKEEQLHV 278
>gi|448324263|ref|ZP_21513695.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
gi|445619194|gb|ELY72738.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
Length = 321
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 115/250 (46%), Gaps = 23/250 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + D G+ +CS+CGLV +D EWR F + + RVG P+
Sbjct: 28 CPECN--GRIRPDDDRGERVCSDCGLVSGGDEIDYGPEWRSFDEDGNSRG--RVGAPITQ 83
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSG----SLGKLQA------RSSHPDRNLIQAFKSISA 115
GLST I LS L +L+ ++ +RNL QA +
Sbjct: 84 RRHDKGLSTTIGWEDRDAYGNELSARKRSKLNRLRTWNERFTSTNSQERNLKQALGELER 143
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL ++ A IY++ D L GR+ EA+ A LY A RQ PRT F SV
Sbjct: 144 MASALGLPEPCRETAAIIYRQAVDADLLLGRSIEAVATASLYAAARQHGTPRTFSTFESV 203
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE-- 233
+ + I RA + L +++G +EM YLR+F S+LG++ + + A++
Sbjct: 204 SR-VDEPPIKRA----YRQLSSDLG--LEMAPPDPDHYLRQFTSSLGVSEETERVARDVL 256
Query: 234 AVQKSEDLDI 243
A K E L +
Sbjct: 257 AAAKEEQLHV 266
>gi|448356139|ref|ZP_21544886.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445633353|gb|ELY86541.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
Length = 364
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 122/251 (48%), Gaps = 26/251 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D +T+C++CGLV++ +D EWR F D + RVG P
Sbjct: 70 CPECD--GRLMSDAEHAETVCADCGLVVQEGEIDRGPEWRAFDAAEKD-EKSRVGAPTTN 126
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 127 MMHDQGLSTNIGWQDKDAYGRS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 183
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ ++ L GR+ E + A LY + RQ PR++ E
Sbjct: 184 IDRMASALGLPDNVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAGTPRSLDEI 243
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ K EI R ++++ L +E+ Y+ RF S+L ++++ + A+
Sbjct: 244 EGVSR-VEKDEIARTYRYVIREL------GLEVKPADPVSYVPRFASDLDLSDETERRAR 296
Query: 233 EAVQKSEDLDI 243
+ ++ +++ I
Sbjct: 297 QLLETAKESGI 307
>gi|448628519|ref|ZP_21672288.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445758050|gb|EMA09375.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
Length = 286
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 107/222 (48%), Gaps = 13/222 (5%)
Query: 23 DTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTA- 81
+++CS CGLV+ ++D EWR F+++ D D R G PL GLST I + T
Sbjct: 21 ESVCSGCGLVVGEDAIDPGPEWRSFSDD--DTDRARTGAPLTRSRHDRGLSTKIGRSTRL 78
Query: 82 GGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVE 138
G L + R SS +RN + AF I + + L I+DRA +++ +
Sbjct: 79 KGRKRRQFARLRREHNRAQISSKRERNKVYAFTEIRRIISSMALSDAIRDRACVLFESAQ 138
Query: 139 DQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198
++ L+GR E AA +Y CR E RTV E C+VA T+ E+ A + + + L
Sbjct: 139 NEDLLKGRTLEGFAAAAIYATCRTEGVARTVDELCTVAKA-TQAELRAAYDALNREL--- 194
Query: 199 MGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
+ G I +Y+ RF + L + + A+ V ++D
Sbjct: 195 ---GLPTGPIDPREYVPRFATALELPTAVRQRAERLVDVAQD 233
>gi|340344692|ref|ZP_08667824.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339519833|gb|EGP93556.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 305
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 120/246 (48%), Gaps = 21/246 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH-DPVRVGGPLN 64
C C + ++ D G+ C +CG V+ S + EWR F + +H + R G P +
Sbjct: 11 CPRCAK-NALLTDDVTGERFCGKCGYVISEKSQESGPEWRSFTQD--EHGNKARAGAPTS 67
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLG----KLQARSSHP------DRNLIQAFKSIS 114
+ GLST+I S + L+ S+ +L+ S DRNL QA ++
Sbjct: 68 LTMHDMGLSTIINPMNKDASGKPLTASMKSTIERLRTWDSRSQVHESVDRNLRQALSELN 127
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
+ D+L L + ++A IY+K ++K +RGR+ A++A+ LY ACR PRT+ +
Sbjct: 128 RLKDKLALSDAVIEKAAYIYRKAIEKKLVRGRSISAMIASALYAACRDTETPRTLNDVGE 187
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
AN KK+I R + + L+ ++M + + R S +G+T + + A +
Sbjct: 188 AAN-LKKKDIARCYRLLHRELD------LKMPVVDPIQCVARIASRIGITEKTKRYAAKV 240
Query: 235 VQKSED 240
++ S++
Sbjct: 241 LKISQE 246
>gi|452206486|ref|YP_007486608.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452082586|emb|CCQ35847.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 337
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 121/252 (48%), Gaps = 28/252 (11%)
Query: 6 CADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C +C RLT D G+T+C+ECGLV+E +D EWR F + D RVG P
Sbjct: 43 CPECGGRLT---ADSEHGETVCTECGLVVEEDEIDRGPEWRAFDSAEKDQ-KSRVGAPTT 98
Query: 65 PLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFK 111
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 99 NMMHDKGLSTNIGWQDKDAYGNS--LGSRQRQKMQRLRKWNERFRTRDSK-ERNLKQALG 155
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
I M+ LGL +++ A+ IY++ D L GR+ E + A LY A +Q PR++ E
Sbjct: 156 EIDRMASALGLPENVRETASVIYRRALDDNLLPGRSIEGVSTAALYAAAKQAGTPRSLDE 215
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
V+ K EI R ++V+ L +E+ Y+ RF S+L ++ +A + A
Sbjct: 216 VAGVSR-VEKSEIARTYRYVVREL------GLEIAPADPKSYVPRFASDLDLSEEAERRA 268
Query: 232 QEAVQKSEDLDI 243
++ + + D +
Sbjct: 269 RQLLDGARDAGV 280
>gi|193083921|gb|ACF09599.1| intein-containing transcription factor TFIIB cyclin-related protein
[uncultured marine crenarchaeote KM3-34-D9]
Length = 307
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 102/205 (49%), Gaps = 16/205 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C C + ++V D + G+ CS CG V + EWR F+N+ D RVG +
Sbjct: 18 CPACTK-AKMVLDETTGELFCSVCGFVETEKITEGGPEWRSFSNDGGDRS--RVGAGTSI 74
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKL-----------QARSSHPDRNLIQAFKSIS 114
+ GLST+I + + L S+ K QA SS +RNL QA +
Sbjct: 75 TMHDMGLSTIIGVQNKDATGKPLESSMKKSIERLRTWDSRSQAHSSS-ERNLRQALSEMD 133
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
+ D+L L T+ ++A IY+K ++K ++GR+ +VAAC+Y +CR PRT+ +
Sbjct: 134 KLKDKLTLTDTVIEKAAYIYRKAIERKLVKGRSIHGLVAACIYASCRMTETPRTLDDIAE 193
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
N +K++ R+ I + L+ ++
Sbjct: 194 GIN-IKRKDVARSYRIIFRELDLKI 217
>gi|288559971|ref|YP_003423457.1| transcription initiation factor TFIIB Tfb1 [Methanobrevibacter
ruminantium M1]
gi|288542681|gb|ADC46565.1| transcription initiation factor TFIIB Tfb1 [Methanobrevibacter
ruminantium M1]
Length = 264
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 104/206 (50%), Gaps = 18/206 (8%)
Query: 43 EWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVI---AKPTAGGSTELLSGS----LGKL 95
EWR F +E D RVG P+ + GLST+I K G + + L K
Sbjct: 4 EWRAFDHEQRDKR-TRVGAPITYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKW 62
Query: 96 QAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIV 152
Q + S +RNL A + S RLGL ++++ A+ IY+ + K +RGR+ E +V
Sbjct: 63 QRKIRISGATERNLAFALSELDRDSSRLGLPRSVREAASVIYRSAVENKLIRGRSIEGVV 122
Query: 153 AACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASD 212
AA LY ACRQ PRT+ E V+ +KKE+GR F+ + L +++ D
Sbjct: 123 AASLYAACRQCKVPRTLDEIAEVSR-VSKKEVGRTYRFLTRELH------IKLPPTSPVD 175
Query: 213 YLRRFCSNLGMTNQAVKAAQEAVQKS 238
Y+ RF S LG++ + + E ++K+
Sbjct: 176 YVPRFASELGLSGEVQSRSIEIIEKA 201
>gi|448528868|ref|ZP_21620248.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445710316|gb|ELZ62135.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 354
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 114/239 (47%), Gaps = 22/239 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + D G+T+CS+CGLV+E SVD EWR F N RVG P
Sbjct: 60 CPECG--GRLASDTEHGETVCSDCGLVVEEDSVDRGPEWRAF-NSGERDSKSRVGAPTTN 116
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLG-----------KLQARSSHPDRNLIQAFKSIS 114
++ GLST I + LSG + + R S +RNL QA I
Sbjct: 117 MMHDKGLSTNIGWQDKDAYGKSLSGRQRRRMQRLRTWNERFRTRDSK-ERNLKQALGEID 175
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ + L GR+ E + A LY A RQ PR++ EF +
Sbjct: 176 RMASALGLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYAAARQVGNPRSLDEFTA 235
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
V+ K E+ R ++V+ L + + + Y+ RF S L ++++ + A+E
Sbjct: 236 VSR-VEKMELTRTYRYVVREL------GLRVQPADPTSYVPRFVSRLDLSDETERRARE 287
>gi|268326216|emb|CBH39804.1| transcription initiation factor IIB [uncultured archaeon]
Length = 302
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 118/235 (50%), Gaps = 18/235 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D + C++CG+V+ VD EWR + E + VR G P++
Sbjct: 8 CLECGS-KSIVTDPKHAELYCADCGMVITENLVDLGPEWRSYDAEQASKR-VRTGPPMSY 65
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTT 125
+ GLST PT G T S L L A S+ +++L A I M+ L L
Sbjct: 66 RVHNKGLST----PTPGSLTR--SKRLRGLIAMDSN-EKSLSFALGEIDRMACALNLPRD 118
Query: 126 IKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIG 185
+++ + +Y+K + ++GR+ E + +A LYI CRQ PRT+KE +V+ KK I
Sbjct: 119 LRETTSLLYRKAAKRSLIKGRSIEELASAMLYITCRQYGIPRTLKEIAAVSRMPLKK-IR 177
Query: 186 RAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
RA F++ LE +++ + Y+ RFCS LG+ + + A E V SED
Sbjct: 178 RAYIFLLHKLE------IKLAPADPACYIPRFCSELGLRDVIRERAIEIV--SED 224
>gi|76801766|ref|YP_326774.1| transcription initiation factor TFB 3 [Natronomonas pharaonis DSM
2160]
gi|76557631|emb|CAI49214.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 319
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 119/248 (47%), Gaps = 22/248 (8%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
S C +C ++ D G+T+C +CGLV+E +D EWR F + D + RVG P
Sbjct: 22 SGCPECG--GKLAADTEHGETVCRDCGLVVEEDEIDRGPEWRAFDSAEKD-EKSRVGAPT 78
Query: 64 NPLLSGGGLSTVIA-KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I + L S K+Q R S +RNL QA
Sbjct: 79 TNMMHDKGLSTNIDWRDQDAYGNSLDSRQRQKMQRLRKWNERFRTRDSK-ERNLKQALGE 137
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D+ L GR+ E + A +Y A RQ PR++ E
Sbjct: 138 IDRMASALGLPDNVRETASVIYRRALDENLLPGRSIEGVSTASVYAAARQAGVPRSLDEV 197
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ K EI R ++V+ L +E+ Y+ RF S L ++ +A A+
Sbjct: 198 AGVSR-VEKSEIARTYRYVVREL------GLEVQPADPESYVPRFASELELSEEAENRAR 250
Query: 233 EAVQKSED 240
+ +Q +++
Sbjct: 251 QLLQNAKE 258
>gi|159041370|ref|YP_001540622.1| transcription initiation factor IIB [Caldivirga maquilingensis
IC-167]
gi|189029851|sp|A8MCX6.1|TF2B_CALMQ RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|157920205|gb|ABW01632.1| Transcription factor TFIIB cyclin-related [Caldivirga
maquilingensis IC-167]
Length = 336
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 109/232 (46%), Gaps = 12/232 (5%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSG--- 69
T + D G +C+ CG VL + +D EWR F E + D R GGPL + S
Sbjct: 51 TVFIEDAERGQIVCASCGYVLMEHILDTGPEWRAFTPEEKE-DRARTGGPLERVTSEELV 109
Query: 70 GGLSTVIAKPTAGGSTELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLVTTIKD 128
+ T + P E+L + + R + +RNL+QA ++ ++ +LG+ + D
Sbjct: 110 TRIETTLKSPDLKKKLEILKYKKWQQRIRVQTSYERNLVQATHELNRIAHQLGVPKSCMD 169
Query: 129 RANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAK 188
A +YK+V ++GR+ EAI+AACL++ACR + PR++ E +KEI R
Sbjct: 170 EALAVYKQVLKSGLVKGRSVEAIIAACLHMACRMQGMPRSLDEISQYTRA-PRKEIARCF 228
Query: 189 EFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
I + L + S Y+ + L + K A +++++D
Sbjct: 229 RLIARELRIRLPLS------DPRQYVPKIVEQLKLPGDIAKEAIRVLEEAKD 274
>gi|448333191|ref|ZP_21522402.1| transcription initiation factor IIB [Natrinema pellirubrum DSM
15624]
gi|445623529|gb|ELY76934.1| transcription initiation factor IIB [Natrinema pellirubrum DSM
15624]
Length = 370
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 120/269 (44%), Gaps = 51/269 (18%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
+C +C +V D +T+C++C LV+E +D EWR F D + RVG P
Sbjct: 46 HCPECG--GRLVSDDGRAETVCTDCSLVVEEDEIDRGPEWRAFDAAEKD-EKSRVGAPTT 102
Query: 65 PLLSGGGLSTVIA-------KPTAGGST------ELLSGSLG------------------ 93
++ GLST I K G T + LS ++G
Sbjct: 103 NMMHDQGLSTNIGWQXEKDEKSRVGAPTTNMMHDQGLSTNIGWQDKDAYGRSLSSRQREK 162
Query: 94 ---------KLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLR 144
+ + R+S +RNL QA I M+ LGL T+++ ++ IY++ ++ L
Sbjct: 163 MQRLRTWNERFRTRNSK-ERNLKQALGEIDRMASALGLPDTVRETSSVIYRRALEEDLLP 221
Query: 145 GRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVE 204
GR+ E + A LY A RQ PR++ E +V+ K EI R ++V+ L +E
Sbjct: 222 GRSIEGVATASLYAAARQAGTPRSLDEISAVSR-VEKAEIARTYRYVVREL------GLE 274
Query: 205 MGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
+ Y+ RF S+L + ++ + A +
Sbjct: 275 VQPADPESYVPRFASDLDLADETERRAHD 303
>gi|448456850|ref|ZP_21595506.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445811447|gb|EMA61454.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 581
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 108/225 (48%), Gaps = 18/225 (8%)
Query: 22 GDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA---K 78
G+ I E GL++E +D EWR F N S RVG P + GL+T I K
Sbjct: 42 GELIHEETGLIVEEEQIDPGPEWRAF-NHSERQSKSRVGAPTTKTMHDKGLTTTIDWKDK 100
Query: 79 PTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRAN 131
G S S L K Q R D RNL A I M+ LG+ ++++ A+
Sbjct: 101 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 160
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
IY++ ++ +RGR+ E + A LY ACR+E PR+++E V+ +KEIGR +I
Sbjct: 161 VIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEISDVSR-VERKEIGRTYRYI 219
Query: 192 VKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQ 236
+ L +EM + Y+ RF S L ++ + A E ++
Sbjct: 220 SQEL------GLEMRPVDPKKYVPRFSSELELSEEVQSKANEIIE 258
>gi|448733793|ref|ZP_21716035.1| Transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
gi|445802313|gb|EMA52620.1| Transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
Length = 335
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 114/245 (46%), Gaps = 20/245 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+T C+ECGLV++ +D EWR F + D R G P
Sbjct: 33 CPECG--GRLVNDAEHGETTCAECGLVVDENEIDHGPEWRAFDSAERDRKK-RTGAPTTK 89
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISA 115
L+ GLS+ I + LS + R + +RNL QA I
Sbjct: 90 LMHDEGLSSQIGWQNRDANGNALSARKRQRMQRLRTWDERFRTRNSKERNLKQALGEIER 149
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M LG+ +++ A+ IY++ + L GR+ E + A LY A RQ PR+V++ +V
Sbjct: 150 MGSALGVPKDVRETASVIYRRALAEDLLPGRSIEGVSTAALYAAIRQMGLPRSVEDVAAV 209
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ E RA +I + L +E+G Y+ RF S+L + ++ + A++ +
Sbjct: 210 TR-VDEMEFKRAYRYINQEL------GLEIGPPDPQQYVSRFASDLDVNDETERRARDLL 262
Query: 236 QKSED 240
+ +++
Sbjct: 263 RTAQE 267
>gi|193084026|gb|ACF09700.1| intein-containing transcription factor TFIIB cyclin-related protein
[uncultured marine crenarchaeote AD1000-202-A2]
Length = 307
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 105/211 (49%), Gaps = 18/211 (8%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETS-EWRIFANESSDHDPVRV 59
+ C C + ++V D + G+ CS CG V EA + E EWR F+N+ D RV
Sbjct: 13 LGKQRCPSCTK-AKMVLDENTGELFCSFCGFV-EAEKITEGGPEWRSFSNDGGDRS--RV 68
Query: 60 GGPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKL-----------QARSSHPDRNLIQ 108
G + + GLST+I + + L S+ K QA SS +RNL Q
Sbjct: 69 GAGTSITMHDMGLSTIIGAQNKDATGKPLESSMKKSIERLRTWDSRSQAHSS-AERNLRQ 127
Query: 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT 168
A + + D+L L + ++A IY+K ++K ++GR+ +VAAC+Y ACR PRT
Sbjct: 128 ALSEMDKLKDKLTLTDNVIEKAAYIYRKAIERKLVKGRSIHGLVAACIYAACRITETPRT 187
Query: 169 VKEFCSVANGTTKKEIGRAKEFIVKHLEAEM 199
+ + N +K++ R+ I + L+ ++
Sbjct: 188 LDDIAEGIN-IKRKDVARSYRIIFRELDLKI 217
>gi|242780523|ref|XP_002479613.1| transcription initiation protein [Talaromyces stipitatus ATCC
10500]
gi|218719760|gb|EED19179.1| transcription initiation protein [Talaromyces stipitatus ATCC
10500]
Length = 328
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 117/250 (46%), Gaps = 33/250 (13%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH-DPVRVGGPLN 64
C +CK + + +T+C CGLVL +D SEWR F+N+ ++ DP RVG N
Sbjct: 25 CPECKEFPPNLEFPGSHETVCGSCGLVLADREIDIHSEWRTFSNDDQNNDDPSRVGETSN 84
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
LL+G L T IA G + +L KL S ++ L+ A+K I A+ D +
Sbjct: 85 ILLNGNQLETSIAGGATGAARQLYRAQ-NKLS--SEKNNKALMAAYKEIGALCDGFNIQK 141
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+A PRT E +V ++KEI
Sbjct: 142 IVADTAKYLFKIVDDHKAFKGKSQDA---------------PRTFSEIFAVTK-VSRKEI 185
Query: 185 GR-----AKEFIVKHLE--AEMGQSV---EMGTIHASDYLRRFCSNLGMTNQAVKAA--- 231
GR K F +++E A +G + + SD RF + LG+ + AA
Sbjct: 186 GRIYKSLEKFFTAQNIERTAIVGSDAGFKQTTSTKPSDLCERFGTFLGLDYRTWNAAATL 245
Query: 232 QEAVQKSEDL 241
+ V K DL
Sbjct: 246 SDKVTKDGDL 255
>gi|448732993|ref|ZP_21715239.1| transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
gi|445803326|gb|EMA53623.1| transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
Length = 351
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 118/241 (48%), Gaps = 20/241 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C E +H G+ C+ECGLV++ +D +EW + E + RVG P+ P
Sbjct: 54 CPECGGRLEHDPEH--GERACTECGLVVDEDEIDLGAEWTAHSAEEQ-QERSRVGSPVTP 110
Query: 66 LLSGGGLSTVIA-KPTAGGSTELLSGSLGKLQA-RSSHP--------DRNLIQAFKSISA 115
+ GLST I + L + K+Q R+ H +RNL I
Sbjct: 111 TMHDKGLSTEIDWRDQDARGNPLSTRQRRKMQRLRTWHSRSQTDGTQERNLRHGLGEIDR 170
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL +I++ A+ IY++V D+ L GR+ E++ AA LY A RQ R++ +V
Sbjct: 171 MASALGLPASIRETASVIYRRVIDENLLIGRSVESVSAAALYAATRQSTSARSLDGIVTV 230
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
A K+ IGR +I + L +E+ +D+L R CS L ++ + + ++E +
Sbjct: 231 AR-MDKQSIGRTYRYISREL------GLEIEPPDPTDHLPRLCSVLDLSTEIEQQSRELL 283
Query: 236 Q 236
+
Sbjct: 284 E 284
>gi|409731108|ref|ZP_11272645.1| Transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
gi|448722791|ref|ZP_21705320.1| Transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
gi|445788613|gb|EMA39320.1| Transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
Length = 336
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 118/251 (47%), Gaps = 20/251 (7%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
+ C +C +V D G+T+C+ECGLV++ +D EWR F + + ++ R G P
Sbjct: 31 EQVCPECG--GRLVSDTEHGETVCNECGLVVDENEIDHGPEWRAF-DAAERNEKKRTGAP 87
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKS 112
++ GLS+ I LS + R + +RNL QA
Sbjct: 88 TTKMMHDKGLSSQIGWQNKDAYGNALSSRKRQQMQRLRTWDERFRTRNSKERNLKQALGE 147
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LG+ +++ A+ IY++ + L GR+ E + A LY RQ PR+V+E
Sbjct: 148 IDRMASALGVPKDVRETASVIYRRALAENLLPGRSIEGMSTAALYAGIRQMGLPRSVEEV 207
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
+V+ + E RA +I + L+ +++ YL RF S+L ++ + + A+
Sbjct: 208 GAVSR-VDEMEFKRAYRYINQELD------LQIAPPKPQQYLSRFASDLDVSEETERRAR 260
Query: 233 EAVQKSEDLDI 243
E + +E+ I
Sbjct: 261 ELLTTAEEQAI 271
>gi|448407123|ref|ZP_21573550.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
gi|445676336|gb|ELZ28859.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
Length = 288
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 110/224 (49%), Gaps = 13/224 (5%)
Query: 23 DTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTA- 81
+T+C+ CGLV+ ++D EWR F ++ ++ + R G PL GLST I + T
Sbjct: 21 ETVCASCGLVVAEDNIDHGPEWRSFEDDETNRE--RTGAPLTRSRHDRGLSTEIGRSTRL 78
Query: 82 GGSTELLSGSLGKLQARS---SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVE 138
G + + R+ S +RN + F I + LGL I+DRA +++ +
Sbjct: 79 KGRKRRRMARMRRQHNRTKIGSKAERNQVYGFTEIRRLVSALGLSDHIRDRACVLFESAQ 138
Query: 139 DQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198
D+ LRGR+ E AA +Y CR RT+ E + A +K E+ A + + + L
Sbjct: 139 DEDLLRGRSLEGFAAATVYATCRTAEVSRTIDEVVADARA-SKAELSAAYDALNRDL--- 194
Query: 199 MGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLD 242
+ G I ++YL RF S+L + A+E V+++ +L+
Sbjct: 195 ---GLPTGPIDPAEYLARFASDLDLPQGLEGRARELVERTRELN 235
>gi|448564209|ref|ZP_21635910.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445717196|gb|ELZ68917.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
Length = 309
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 118/255 (46%), Gaps = 32/255 (12%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
++ C DC + +T+C +CGLVL Y +D EWR+F+ + D R G P
Sbjct: 20 NNACPDCGGDVST----NTAETVCDDCGLVLSEYQIDHGPEWRLFS--ADDEGKKRTGAP 73
Query: 63 LNPLLSGGGLSTVIA-KPTAGGSTELLSG-------------SLGKLQARSSHPDRNLIQ 108
L P GLS+ I K A G T LSG S G+ Q+++ +RNL
Sbjct: 74 LTPTRHDRGLSSEIGYKRDANGRT--LSGKKRQQVARMRREQSRGRFQSKA---ERNLAH 128
Query: 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT 168
+ ++ L L + +D+A +++ + + LRGR+ EAI AA +Y CR RT
Sbjct: 129 GLGEVRRIAGALELSESTRDQACRLFRSAQSEDLLRGRSIEAIAAASVYGICRCNRLMRT 188
Query: 169 VKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAV 228
++E +A ++ + K L E+G + + D++ R S LG+ +
Sbjct: 189 LEEIADLARVENQRVVN-----AYKTLNTELG--LPTPPVRPRDFIPRLVSELGVPEEIS 241
Query: 229 KAAQEAVQKSEDLDI 243
+ A+ ++E L +
Sbjct: 242 RRARSIAMEAEQLGV 256
>gi|399576051|ref|ZP_10769808.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399238762|gb|EJN59689.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 288
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 105/225 (46%), Gaps = 13/225 (5%)
Query: 23 DTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTA- 81
+T+C ECGLV+ +D EWR FA++ D +P R G PL GLST I + T
Sbjct: 22 ETVCGECGLVVAEDRIDRGPEWRSFADD--DTNPERTGAPLTRSRHDRGLSTEIGRSTRL 79
Query: 82 GGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVE 138
G L + R SS +RN + AF I + RL L ++D A + + +
Sbjct: 80 KGRKRRQMARLRRQHNRARISSKRERNQVYAFTEIRRLVSRLSLPEQVRDHACSLVRSAQ 139
Query: 139 DQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198
++ +RGR+ E AA +Y ACR RTV E VA ++ + L E
Sbjct: 140 NEDLVRGRSLEGFAAASVYAACRVAGVSRTVDEVTDVARADANEQ-----QAAYDALNRE 194
Query: 199 MGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
+G + +G I +Y+ RF S L + + A+ +++ + I
Sbjct: 195 LG--LPVGPIDPVEYIPRFASKLDVDASVERRARTLAEEAREAGI 237
>gi|167044633|gb|ABZ09305.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_APKG7F19]
Length = 300
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 106/206 (51%), Gaps = 18/206 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C C + +++ D++ G+ CS CG V+ ++ EWR F+N+ +D RVG +
Sbjct: 11 CPSCTK-AKMILDNNTGELFCSFCGFVMPEKLIEGGPEWRSFSNDGTDRS--RVGAGTSI 67
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGK-------LQARS---SHPDRNLIQAFKSISA 115
+ GLST+I + + + L S+ K +RS S +RNL QA +
Sbjct: 68 TIHDMGLSTIIGQQNKDATGKPLDSSMKKSIERLRTWDSRSQAHSSAERNLRQALSEMDK 127
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M +L L + ++A IY+K ++K ++GR+ +VAAC+Y +CR RT+ + +
Sbjct: 128 MKAKLSLTDPVIEKAAYIYRKAIERKLVKGRSIHGLVAACIYASCRNTETSRTLDD---I 184
Query: 176 ANGTT--KKEIGRAKEFIVKHLEAEM 199
ANG +K++ R I + L+ ++
Sbjct: 185 ANGINIRRKDVARCYRLIFRELDLKI 210
>gi|110668479|ref|YP_658290.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109626226|emb|CAJ52683.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 346
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 121/245 (49%), Gaps = 20/245 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D + G+T+CS+CGLV++ S+D EWR F + D RVG P
Sbjct: 51 CPECS--GNLIQDEARGETVCSDCGLVVDENSIDRGPEWRAFDSAERDQ-KSRVGAPTTK 107
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISA 115
L+ GLST I LS + R +RNL QA I
Sbjct: 108 LMHDKGLSTNIGWQDKDAYGNALSARQREQMQRLRTWNERFRTRDSKERNLKQALGEIDR 167
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL ++++ A+ IY++ D+ L GR+ E + A LY A RQ PR++ E V
Sbjct: 168 MASALGLPESVRETASVIYRRALDEDLLPGRSIEGVATAALYAAARQAGTPRSLDEIERV 227
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ + E+ R ++V+ L+ +E+ Y+ RF S+L +++++ + A+E +
Sbjct: 228 SR-VDRMELTRTYRYVVRELK------LEIEPADPEQYVPRFASDLDLSDESERQARELL 280
Query: 236 QKSED 240
+ +++
Sbjct: 281 RNAKE 285
>gi|385803942|ref|YP_005840342.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339729434|emb|CCC40691.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 346
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 121/245 (49%), Gaps = 20/245 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D + G+T+CS+CGLV++ S+D EWR F + D RVG P
Sbjct: 51 CPECS--GNLIQDEARGETVCSDCGLVVDENSIDRGPEWRAFDSAERDQ-KSRVGAPTTK 107
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISA 115
L+ GLST I LS + R +RNL QA I
Sbjct: 108 LMHDKGLSTNIGWQDKDAYGNALSARQREQMQRLRTWNERFRTRDSKERNLKQALGEIDR 167
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL ++++ A+ IY++ D+ L GR+ E + A LY A RQ PR++ E V
Sbjct: 168 MASALGLPESVRETASVIYRRALDEDLLPGRSIEGVATAALYAAARQAGTPRSLDEIERV 227
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ + E+ R ++V+ L+ +E+ Y+ RF S+L +++++ + A+E +
Sbjct: 228 SR-VDRMELTRTYRYVVRELK------LEIEPADPEQYVPRFASDLDLSDESERQARELL 280
Query: 236 QKSED 240
+ +++
Sbjct: 281 RNAKE 285
>gi|76803176|ref|YP_331271.1| transcription initiation factor TFB 7 [Natronomonas pharaonis DSM
2160]
gi|76559041|emb|CAI50639.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 287
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 111/222 (50%), Gaps = 13/222 (5%)
Query: 23 DTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAG 82
+T+C ECGLV+ +D EWR F+++ ++ P R G PL GLST I + T
Sbjct: 22 ETVCDECGLVVAEDELDRGPEWRSFSDDETN--PERCGAPLTRSRHDRGLSTEIGRSTRL 79
Query: 83 GSTELLSGSLGKLQAR----SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVE 138
+ + + Q SS +RN + F + + +LGL +++RA +++ +
Sbjct: 80 KGRKRRRVARMRRQHNRAQVSSKRERNQMHGFIEVRRLIGQLGLPEALQERACVLFESAQ 139
Query: 139 DQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198
++ L+GR E AA +Y+ CR + RT+ E + A+ T+ E+ A + + + L
Sbjct: 140 NEDLLQGRCIEGFAAAAVYVVCRTASVSRTLDEIVAAASA-TRDELTVAYDALNREL--- 195
Query: 199 MGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
+ G I ++YL RF S LG+ + + A+E +E+
Sbjct: 196 ---GIPTGPIAPTEYLARFASKLGLPSAVERTARELATDAEE 234
>gi|448321963|ref|ZP_21511437.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
gi|445602545|gb|ELY56520.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
Length = 321
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 103/222 (46%), Gaps = 22/222 (9%)
Query: 26 CSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGST 85
C +CGL+LE +D +WR F ++ RVG P + GL+T I
Sbjct: 46 CEDCGLLLEEKRIDHGPDWRAFTHQEQ-QKKSRVGAPTTRTMHDKGLTTSIDWKNKDAHG 104
Query: 86 ELLSGS-------LGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYK 135
LS L K Q R S +RNL A M+ LG+ ++++ A+ +Y+
Sbjct: 105 RSLSADKRSQMNRLRKWQTRIRTSDAGERNLQFALSETDRMASGLGIPRSVREVASVLYR 164
Query: 136 KVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHL 195
+ ++ ++GR+ E + LY ACR E PR+++E V+ +KEIGR +I K L
Sbjct: 165 RALERDLIQGRSIEGVATGTLYAACRLEGMPRSLEEVAMVSR-VDRKEIGRTYRYIAKEL 223
Query: 196 EAEMGQSVEMGT--IHASDYLRRFCSNLGMTNQAVKAAQEAV 235
E+GT + Y+ RFCS L ++ A E +
Sbjct: 224 --------ELGTKPVDPKQYVPRFCSELELSPTVQAKASEII 257
>gi|448366610|ref|ZP_21554733.1| Zinc finger TFIIB-type domain-containing protein [Natrialba
aegyptia DSM 13077]
gi|445654065|gb|ELZ06921.1| Zinc finger TFIIB-type domain-containing protein [Natrialba
aegyptia DSM 13077]
Length = 303
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 108/231 (46%), Gaps = 31/231 (13%)
Query: 20 SAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKP 79
+A +T+C +CGLVL +D EWR FA++ D D R G PL GLST I
Sbjct: 20 TATETVCEDCGLVLGEDPIDRGPEWRSFADD--DTDRRRTGAPLTRSRHDRGLSTKI--- 74
Query: 80 TAGGSTELLSGSLGKLQAR-----------------SSHPDRNLIQAFKSISAMSDRLGL 122
G T+ +S ++ R S+ + N + F I ++ RL L
Sbjct: 75 --GYGTDSVSDRSTRITGRKRRQLSRLRREHTRATISTKAEYNQVLGFTEIKRITARLSL 132
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
++++A ++ + + L+GR+ E AAC+Y +CR + PRT+ E ++A T+
Sbjct: 133 PDCLREQACALFDSAQSENLLQGRSIEGFAAACVYASCRVRSLPRTIDEVVTIA-AATEA 191
Query: 183 EIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
E+ A + + + L + G I YL RF SNL + + A+E
Sbjct: 192 ELKAAYDALNRDL------GLPTGPIDPGQYLPRFASNLDLDTAVERRARE 236
>gi|448439566|ref|ZP_21588130.1| Zinc finger TFIIB-type domain protein [Halorubrum saccharovorum DSM
1137]
gi|445691100|gb|ELZ43295.1| Zinc finger TFIIB-type domain protein [Halorubrum saccharovorum DSM
1137]
Length = 333
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 119/240 (49%), Gaps = 24/240 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP-VRVGGPLN 64
C +C+ +V D G+T+C++CGLV+E SVD EWR F +SS+ D RVG P
Sbjct: 39 CPECE--GNLVTDTEHGETVCTDCGLVVEQDSVDRGPEWRAF--DSSERDSKSRVGAPTT 94
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLG-----------KLQARSSHPDRNLIQAFKSI 113
++ GLST I + LS + + R S +RNL QA I
Sbjct: 95 NMMHDKGLSTNIGWQDKDAYGKSLSSRQRQRMQRLRTWNERFRTRDSK-ERNLKQALGEI 153
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M+ LGL +++ A+ IY++ + L GR+ E + A LY A RQ PR++ EF
Sbjct: 154 DRMASALGLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYAAARQAGNPRSLDEFT 213
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
+V+ K E+ R ++++ L+ +E+ Y+ RF S L ++ + + A+E
Sbjct: 214 AVSR-VDKMELTRTYRYVIRELK------LEIQPADPESYVPRFVSRLDLSEETQRLARE 266
>gi|340345821|ref|ZP_08668953.1| Transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339520962|gb|EGP94685.1| Transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 303
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 117/249 (46%), Gaps = 24/249 (9%)
Query: 9 CKRLTEVVF--DHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPL 66
C+R + VF D + G+ CS+CG V E EWR F+ + D+ R G P +
Sbjct: 11 CQRCNKGVFLTDSNTGEMFCSKCGFVATDRIEQEGPEWRAFSKDEGDNR-TRTGTPTSLA 69
Query: 67 LSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISAM 116
+ GL+T+I + + LS S+ R DRN QAF + +
Sbjct: 70 MHDMGLATIINPVNKDATGKPLSASMKSTIERLRTWDNRSQVHEPADRNFRQAFSELDRL 129
Query: 117 SDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVA 176
+L L + ++ IY+K D+ +RGR+ ++AA LY ACR PRT+ + V+
Sbjct: 130 KTKLALSDAVIEKTAYIYRKALDKGLVRGRSIPGLIAASLYAACRNTETPRTLTD---VS 186
Query: 177 NGTT--KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
NG +K+I R +++ L+ ++M ++ + R S G++ + + A E
Sbjct: 187 NGINIKRKDIARCYRLLLRELD------LKMPVVNPIKCVSRISSIAGLSEKTKRKAVEI 240
Query: 235 VQKSEDLDI 243
+ ++ +++
Sbjct: 241 LDQAAKIEL 249
>gi|399577427|ref|ZP_10771180.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
gi|399237810|gb|EJN58741.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
Length = 325
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 102/224 (45%), Gaps = 18/224 (8%)
Query: 22 GDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTA 81
GD I E GLV+E ++D EWR F D RVG P P + GL+T I
Sbjct: 46 GDLIHEETGLVVEEDNIDHGPEWRAFDQSERDQ-KSRVGAPTTPAMHDKGLTTEIGWRDK 104
Query: 82 GGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRAN 131
+ LS K R + +RNL A I M LG +++ A+
Sbjct: 105 DANGHSLSNEKRKQMNRLRTWQQRIRTNDAGERNLQFALSEIDRMVSALGAPDNVQEMAS 164
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
IY++ D+ +RGR+ E + L+ A R E PRT++E VA +GRA
Sbjct: 165 VIYRRALDEDLIRGRSIEGVATGALHAAMRCEAIPRTLEEVSDVAR-VDHNRVGRA---- 219
Query: 192 VKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+HL E+G +E+ S Y+ R+CS L +++ + A E V
Sbjct: 220 YRHLSQELG--LEVSPTDPSQYVPRYCSALDVSSLVEQKATEIV 261
>gi|448564338|ref|ZP_21636019.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445716889|gb|ELZ68619.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
Length = 312
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 113/235 (48%), Gaps = 28/235 (11%)
Query: 23 DTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA-KPTA 81
+T+C ECGL+++ Y +D EWRI E + R G PL P GLS+ I K A
Sbjct: 36 ETLCEECGLIIDEYQIDHGPEWRI--TERDEESRRRTGAPLTPTRHDRGLSSEIGYKRDA 93
Query: 82 GGSTELLSG-------------SLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKD 128
G T LSG S G+ Q+++ +RNL + ++ LG +I+D
Sbjct: 94 SGRT--LSGKKRQQVARMRREQSRGRFQSKA---ERNLALGLGEVRRIAGALGFSDSIRD 148
Query: 129 RANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAK 188
+A +++ +++ LRGR+ E+I AA +Y CR RT++E +A ++ +
Sbjct: 149 QACRLFRSAQNEDLLRGRSVESIAAASIYGICRCNGLLRTLEEVADLARVENQRVVN--- 205
Query: 189 EFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
K L E+G + + D++ R S L + + + A + ++SE L +
Sbjct: 206 --AYKTLNTELGLPTQ--PVRPRDFIPRLASELAVPDSVRQKALDLAEESETLGV 256
>gi|448303866|ref|ZP_21493812.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445592493|gb|ELY46680.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 296
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 107/227 (47%), Gaps = 23/227 (10%)
Query: 20 SAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKP 79
S +TIC +CGLVL ++D EWR F ++ +D P R G PL GLST I
Sbjct: 17 SGTETICEDCGLVLAEDAIDRGPEWRSFDDDETD--PRRTGAPLTRSRHDRGLSTEIGY- 73
Query: 80 TAGGSTELLSGSLGKLQAR-------------SSHPDRNLIQAFKSISAMSDRLGLVTTI 126
+G +E S G+ + + SS +RN + F I ++ L L +
Sbjct: 74 GSGTPSEYRSRITGRKRRQIARLRREHNRARISSKAERNQVYGFTEIRRINTGLSLPDSA 133
Query: 127 KDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGR 186
+++A ++K + + +GR+ E AA +Y CR + PRT+ E +VA + E+
Sbjct: 134 REQACTLFKSAQSEGLFQGRSLEGFAAAAIYATCRTRSNPRTIDEITTVARA-DRHELTA 192
Query: 187 AKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
A + + + L + G I + YL R+ S LG+ + A+E
Sbjct: 193 AYDALNREL------GLPTGPIDPTGYLPRYASKLGLETAIERRARE 233
>gi|386874729|ref|ZP_10116955.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386807352|gb|EIJ66745.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 301
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 102/204 (50%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C C + ++V D+ +G+ CS+CG V+ + EWR F + + R G P +
Sbjct: 9 CPRCAQ-GKLVTDNESGEMFCSKCGFVITEKLQEAGPEWRSFTQDEGGNK-ARAGAPTSL 66
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLG----KLQARSSHP------DRNLIQAFKSISA 115
+ GL+T+I S L+ S+ +L+ S DRN QAF ++
Sbjct: 67 TMHDMGLATIINPVNKDASGRPLTASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELNR 126
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
+ D+L + + ++A IY+K ++ +RGR+ A++A+ LY ACR PR +K+
Sbjct: 127 LKDKLAISDAVIEKAAYIYRKALEKGLVRGRSISALMASALYAACRDTATPRNLKDVEEA 186
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
AN +K+I R +VK L+ +M
Sbjct: 187 AN-IKRKDIARCYRLLVKELDLKM 209
>gi|408402844|ref|YP_006860827.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408363440|gb|AFU57170.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 310
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 121/239 (50%), Gaps = 18/239 (7%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
VV D G+ I + G V+ ++ + EWR F +E D D R G P++ GLST
Sbjct: 2 VVTDPDTGELIRKDTGEVISDNALSQEKEWRAFGSEG-DADRARTGAPVSLAFHDMGLST 60
Query: 75 VIAKPTAGGSTELLSGS----LGKLQ-----ARSSHP-DRNLIQAFKSISAMSDRLGLVT 124
VI K + S + + +G+L+ + S P +R+L QAF +S + DRLGL
Sbjct: 61 VIGKESTDASGNQIDSATQMRMGRLRMWHSISHSHSPKERSLQQAFTMLSKIKDRLGLPD 120
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ ++A +Y+K +++ +RG + +++AA +Y A RQ RT+ E S + K+
Sbjct: 121 YVIEKAAYVYRKAQERGLIRGDSIGSVLAASIYTAVRQSGVLRTLDEI-SASIDVKPKQA 179
Query: 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
GR+ IV L+ +++ I + Y+ R + L + + + A E ++++ D+
Sbjct: 180 GRSYRRIVTELD------IKVPMIDHARYIIRIANRLELDERTKRKALELIEQARKKDL 232
>gi|429190252|ref|YP_007175930.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|429134470|gb|AFZ71481.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
Length = 325
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 121/249 (48%), Gaps = 22/249 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+T+C +CGLV++ +D EWR F + D + RVG P
Sbjct: 31 CPECS--GRLVSDDERGETVCEDCGLVVDEGEIDRGPEWRAFDSAEKD-EKSRVGAPTTN 87
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSL-----------GKLQARSSHPDRNLIQAFKSIS 114
++ GLST I + LS + + R S +RNL QA I
Sbjct: 88 MMHDQGLSTNIGWQDKDAYGKALSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGEID 146
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ ++ L GR+ E + A LY A RQ PR++ E +
Sbjct: 147 RMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATAALYAAARQAGTPRSLDEISA 206
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ K EI R ++V+ L +E+ Y+ RF S+L + ++ + A++
Sbjct: 207 VSR-VEKDEIARTYRYVVREL------GLEIQPADPESYVPRFASDLDLPDETERRARQL 259
Query: 235 VQKSEDLDI 243
++ ++D +I
Sbjct: 260 LKTAKDAEI 268
>gi|448356416|ref|ZP_21545149.1| Zinc finger TFIIB-type domain-containing protein [Natrialba
chahannaoensis JCM 10990]
gi|445653449|gb|ELZ06320.1| Zinc finger TFIIB-type domain-containing protein [Natrialba
chahannaoensis JCM 10990]
Length = 399
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 114/244 (46%), Gaps = 25/244 (10%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
++C +C + + +TIC ECG +++ +D EWR F ++ +D R G PL
Sbjct: 8 THCPEC----DGILRERETETICEECGAIVDTDLIDRGPEWRSFVDDPTDR--RRTGAPL 61
Query: 64 NPLLSGGGLSTVIAKPTAG--GSTELLSG----SLGKLQAR------SSHPDRNLIQAFK 111
GLST+I + + ++G L +LQ ++ + N I+AF
Sbjct: 62 TRSRHDRGLSTMIGYGSGSQFDQSTRITGRKRRQLTRLQREHTRSQIATKAEYNQIRAFN 121
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
I + RL L I ++A ++ + + L+GR+ E AA +Y CR N PRT+ E
Sbjct: 122 EIRCIVARLSLTDPITEQACALFDNAQSENLLQGRSLEGFAAAVVYAICRTHNLPRTIDE 181
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
+VA+ + E+ A L E+G +E G I +DYL RF S L + K A
Sbjct: 182 IVTVASA-DEAELKAA----YTALNRELG--LETGPIDPTDYLPRFASELDLEMPTEKRA 234
Query: 232 QEAV 235
E V
Sbjct: 235 HEHV 238
>gi|269867074|ref|XP_002652480.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
gi|220062405|gb|EED41577.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
Length = 158
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 77/140 (55%), Gaps = 8/140 (5%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
PDR L FK I + +R L TI D+A I+K VE +K L+G+N E + AC+YIAC+
Sbjct: 8 PDRVLKNGFKLIQSFCERGFLTQTIIDKAQAIFKDVESKKLLKGKNLEGCIGACIYIACK 67
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNL 221
E PRT KE SV K+EIG+ + I K ++ G + +D + RFCS+L
Sbjct: 68 TEGCPRTFKEI-SVITVVPKREIGKCYKLISKEIDTT-------GIMATADIVGRFCSDL 119
Query: 222 GMTNQAVKAAQEAVQKSEDL 241
+ + A+ +K +D+
Sbjct: 120 NLNAKIQNTARYIAKKVQDI 139
>gi|354609997|ref|ZP_09027953.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353194817|gb|EHB60319.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 285
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 17/238 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C E V + +C++CGLV+ +D EWR F ++ D +P R G PL
Sbjct: 7 CPEC----EGVVRKQETERVCTDCGLVVCEDRIDRGPEWRSFDDD--DTNPERTGAPLTR 60
Query: 66 LLSGGGLSTVIAKPTA-GGSTELLSGSLGKLQARSS---HPDRNLIQAFKSISAMSDRLG 121
GLST I + T G L + R+S DRN + F I + LG
Sbjct: 61 SRHDRGLSTEIGRSTRLKGRKRRKFARLRRQHKRASIGSKADRNQVYGFTEIRRIVGALG 120
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +++D+A ++ + + LRGR+ E AA +Y CR RT+ E V+ G +
Sbjct: 121 LPRSVRDQACALFDSAQTEDLLRGRSIEGFAAAAVYAVCRTNGLSRTLAEIEHVSRG-DE 179
Query: 182 KEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSE 239
E+ A + + + L + G I DY+ R+ S L ++ ++A+E V +E
Sbjct: 180 SELSAAYDAMNRDL------GLPTGPIDPRDYVPRYASELDLSTDVERSAREYVDIAE 231
>gi|407465321|ref|YP_006776203.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048509|gb|AFS83261.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 309
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 122/250 (48%), Gaps = 23/250 (9%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
+C C ++ V D G+ ICS CG V+ + D E R+ +N S D R G L
Sbjct: 13 FCDYC-HASKFVTDQITGEIICSSCGFVISENAEDRGLERRLISNTS---DTARTGPGLT 68
Query: 65 PLLSGGGLSTVIA--------KPTAGGSTELLSGSLGKLQARS---SHPDRNLIQAFKSI 113
+ GL+T I KP + +T++ G L K +RS + ++NL A
Sbjct: 69 LKMHDKGLNTRIGVQNKDSVGKPLSAKTTQMF-GRLRKWDSRSQTKNSAEKNLRFALIEF 127
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
+ +LGL T+ +RA+ Y+K ++ +RGR ++I AACLY +CR RT+ E
Sbjct: 128 DKVQSKLGLSDTVVERASLFYRKAIERNLIRGRTVKSIAAACLYASCRDLEHHRTLTEI- 186
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
++ +KEI RA + + E+G +V + + + + S +G + + ++ A +
Sbjct: 187 AIQFVIKRKEIARAYRILFR----ELGFTVSV--VDPIKSINKIASKIGSSEKVIRKATQ 240
Query: 234 AVQKSEDLDI 243
+ ++D +I
Sbjct: 241 ILTAAQDAEI 250
>gi|448401815|ref|ZP_21571809.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445666063|gb|ELZ18733.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 297
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 103/224 (45%), Gaps = 19/224 (8%)
Query: 23 DTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAG 82
+ +C ECGLV +D EWR F E D DP R G PL GLST I +
Sbjct: 23 EIVCEECGLVSAEDEIDRGPEWRSF--EDDDSDPRRTGAPLTRSRHDRGLSTEIGYGSHA 80
Query: 83 GSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
G++ L+G + AR SS +RN + F I ++ L L ++++++
Sbjct: 81 GTSSRLTGRKRRQIARLRREHNRARISSKAERNQVYGFAEIRRLTALLSLPESVREQSCA 140
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
+++ + + +GR+ E AA +Y CR + RT+ E +VA E+ A + +
Sbjct: 141 LFESAQSEGLFQGRSLEGFAAAAIYATCRTRSIARTIDEITAVAR-ADNAELSAAYDAMN 199
Query: 193 KHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQ 236
+ L + G I + YL RF S L + + A+E V+
Sbjct: 200 REL------GLRTGPIDPAQYLPRFASELELGTAVERRAREHVE 237
>gi|255513741|gb|EET90006.1| Transcription factor TFIIB cyclin-related [Candidatus Micrarchaeum
acidiphilum ARMAN-2]
Length = 380
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 111/238 (46%), Gaps = 19/238 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C C T ++FD G+ +C+ CGLV+E D EWR F + + R G P+
Sbjct: 84 CPSCGS-TALIFDSERGELVCNNCGLVIEENVTDTGPEWRAF-DADQRNSRARTGAPMKY 141
Query: 66 LLSGGGLSTVI----------AKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISA 115
GL T I P+ + K + +S +RN + A ++
Sbjct: 142 TRPNKGLVTEIDLYNKDIRGVRIPSKRQAQLYRMRKWHKRASIASSSERNYLIALPELNR 201
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
+S LGL I++ A +Y+K +RGR E +V A +Y ACR+ PRT+ E ++
Sbjct: 202 VSSYLGLPENIRENAALLYRKCVQNNLIRGRPIETVVQAVIYAACRKAGMPRTLDEIATI 261
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
+ G KKEIGRA + + E+G + + A Y+ R+ + L ++ +A + A E
Sbjct: 262 S-GLPKKEIGRA----YRAISHELGLKIPLTDPIA--YVPRYVNALKLSGEAQEKAVE 312
>gi|448639408|ref|ZP_21676734.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445762687|gb|EMA13905.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
Length = 322
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 115/244 (47%), Gaps = 26/244 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C VV D G+T+C +CGLV+E +D EWR F + D RVG P
Sbjct: 29 CPECS--GNVVTDTEHGETVCEDCGLVVEEDEIDRGPEWRAFNSAEKDRKS-RVGAPTTN 85
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 86 MMHDKGLSTNIGWQNKDAYGRS--LSSEQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 142
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ ++ IY++ L GR+ E + A LY A R PR++ E
Sbjct: 143 IDRMASALGLPQNVRETSSVIYRRALGDDLLPGRSIEGVATAALYAAARMAGNPRSLDEM 202
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ K E+ R +IV+ L S+E+ YL RF S+L ++ + + A+
Sbjct: 203 ARVSR-VEKMELTRTYRYIVREL------SLEVQPADPEHYLPRFISDLDLSEETQRQAR 255
Query: 233 EAVQ 236
+ V+
Sbjct: 256 DLVE 259
>gi|448683556|ref|ZP_21692273.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|445783695|gb|EMA34520.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 286
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 107/222 (48%), Gaps = 13/222 (5%)
Query: 23 DTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTA- 81
+++CS CGLV+ ++D EWR F ++ +D R G PL GLST I + T
Sbjct: 21 ESVCSSCGLVVGEDAIDPGPEWRSFDDDDTDR--ARTGAPLTRSRHDRGLSTKIGRSTRL 78
Query: 82 GGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVE 138
G L + R SS +RN + AF I + + L I+DRA +++ +
Sbjct: 79 KGRKRRQFARLRREHNRAQISSKRERNKVYAFTEIRRIISSMALSDAIRDRACVLFESAQ 138
Query: 139 DQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198
++ L+GR E AA +Y CR E RTV E C+VA T+ E+ A + + + L
Sbjct: 139 NENLLQGRTLEGFAAAAIYATCRTEGVARTVDELCTVAKA-TQAELRAAYDALNREL--- 194
Query: 199 MGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
+ G I +Y+ RF + L + + A+ V +++D
Sbjct: 195 ---GLPTGPIDPREYVPRFATALDLPTAVRQRAERLVDEAQD 233
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 120 LGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179
L L T ++ RA + + +D+ + GRN + AACLY A +++N T E A+ T
Sbjct: 214 LDLPTAVRQRAERLVDEAQDRGLVSGRNPAGVAAACLYTAAQEQNVALTQVEAAETADVT 273
>gi|448720890|ref|ZP_21703484.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
gi|445780503|gb|EMA31385.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
Length = 355
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 117/270 (43%), Gaps = 52/270 (19%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
+C +C +V D +T+C +CGLV+E +D EWR F D + RVG P
Sbjct: 29 HCPECG--GRLVSDTEHAETVCDDCGLVVEEDEIDRGPEWRAFDAAEKD-EKSRVGAPTT 85
Query: 65 PLLSGGGLSTVIA-------------------------------KPTAGGSTELLSGSLG 93
++ GLST I + + + L S
Sbjct: 86 NMMHDQGLSTNIGWQDKDAYGKALSSRQRQKMQRLRTWNERFRTRDSKERNLXLSSRQRQ 145
Query: 94 KLQ----------ARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPL 143
K+Q R S +RNL QA I M+ LGL +++ A+ IY++ ++ L
Sbjct: 146 KMQRLRTWNERFRTRDSK-ERNLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLL 204
Query: 144 RGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSV 203
GR+ E + A LY A RQ PR++ E +V+ K E+ R ++++ L +
Sbjct: 205 PGRSIEGVATASLYAAARQAGTPRSLDEISAVSR-VDKMELTRTYRYVIREL------GL 257
Query: 204 EMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
E+ Y+ RF S+L ++++ + A+E
Sbjct: 258 EVQPADPESYVPRFVSDLDLSDETERMARE 287
>gi|55377937|ref|YP_135787.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448658471|ref|ZP_21682871.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|55230662|gb|AAV46081.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445761196|gb|EMA12445.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
Length = 322
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 115/244 (47%), Gaps = 26/244 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C VV D G+T+C +CGLV+E +D EWR F + D RVG P
Sbjct: 29 CPECS--GNVVTDTEHGETVCEDCGLVVEEDEIDRGPEWRAFNSAEKDRKS-RVGAPTTN 85
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 86 MMHDKGLSTNIGWQNKDAYGRS--LSSEQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 142
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ ++ IY++ L GR+ E + A LY A R PR++ E
Sbjct: 143 IDRMASALGLPQNVRETSSVIYRRALGDDLLPGRSIEGVATAALYAAARMAGNPRSLDEM 202
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ K E+ R +IV+ L S+E+ YL RF S+L ++ + + A+
Sbjct: 203 ARVSR-VEKMELTRTYRYIVREL------SLEVQPADPEHYLPRFISDLDLSEETQRQAR 255
Query: 233 EAVQ 236
+ V+
Sbjct: 256 DLVE 259
>gi|448301515|ref|ZP_21491508.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445584251|gb|ELY38575.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 331
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 104/225 (46%), Gaps = 18/225 (8%)
Query: 26 CSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGST 85
C +CGLVLE +D EWR F D + RVG P + GLST I
Sbjct: 51 CEDCGLVLEEGRIDHGPEWRAFDAAEKD-EKSRVGAPTTNTMHDRGLSTNIGWQNKDAYG 109
Query: 86 ELLSG----SLGKLQARSSH------PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYK 135
LS + +L+ + DRNL QA I M+ LGL +++ A+ IY+
Sbjct: 110 RALSSRKRQQIQRLRTWNERFRTRDATDRNLKQALGEIDRMASALGLPENVRETASVIYR 169
Query: 136 KVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHL 195
+ ++ L GR+ E + A LY A RQ PR++ E +V+ E+ R+ ++V+ L
Sbjct: 170 RALEEDLLPGRSIEGMATAALYAAVRQAGLPRSIDELATVSR-VPYLEVARSYRYLVREL 228
Query: 196 EAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
+ M + +YL R+ S L ++N+ + A ++ D
Sbjct: 229 DLPMAPPDPL------EYLPRYASLLEISNETERQAHSLLEDGID 267
>gi|345007304|ref|YP_004810156.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344322930|gb|AEN07783.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 308
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 109/230 (47%), Gaps = 22/230 (9%)
Query: 20 SAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLNPLLSGGGLSTVIAK 78
+A +T+C +CGLV++ +D EWR F D D R G PL GLST I +
Sbjct: 34 NAVETVCEDCGLVIDEQRIDHGPEWRTF-----DEDECKRTGAPLTAARHDRGLSTEIGR 88
Query: 79 PTAGGSTELLSGSLGKL------QAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDR 129
T EL S +L Q+R S +RNL + +S L L T++D+
Sbjct: 89 RTDANGNELSSQKQRRLWRLRREQSRGRFQSKAERNLAHGLGEVRRISSALELSETLRDQ 148
Query: 130 ANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKE 189
A +++ +++ LRGR+ EA+ AA +Y ACR +PRT+ E A + E R
Sbjct: 149 ACRLFRSAQNEDFLRGRSIEAMAAASIYGACRCNGRPRTLNEVTDSA----RVEDSRITN 204
Query: 190 FIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSE 239
L E+G + + S ++ R S L +++Q + A+ + SE
Sbjct: 205 AYTT-LNTELGLPAQ--PVTPSAFVPRLASELDVSDQLRQRARRLAEASE 251
>gi|448363880|ref|ZP_21552475.1| Zinc finger TFIIB-type domain-containing protein [Natrialba
asiatica DSM 12278]
gi|445645464|gb|ELY98468.1| Zinc finger TFIIB-type domain-containing protein [Natrialba
asiatica DSM 12278]
Length = 303
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 108/226 (47%), Gaps = 21/226 (9%)
Query: 20 SAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA-- 77
+A +T+C +CGLVL +D EWR FA++ D D R G PL GLST I
Sbjct: 20 TATETVCEDCGLVLGEDPIDRGPEWRSFADD--DTDRRRTGAPLTRSRHDRGLSTQIGYG 77
Query: 78 KPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
+ + ++G + +R S+ + N + F I ++ RL L ++
Sbjct: 78 SDSVSDRSTRITGRKRRQLSRLRREHTRATISTKAEYNQVLGFTEIKRITARLSLPDCLR 137
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
++A ++ + + L+GR+ E AAC+Y +CR + PRT+ E ++A T+ E+ A
Sbjct: 138 EQACALFDSAQSENLLQGRSIEGFAAACVYASCRVRSLPRTIDEVVTIA-AATEAELKAA 196
Query: 188 KEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
+ + + L + G I YL RF SNL + + A++
Sbjct: 197 YDALNRDL------GLPTGPIDPGQYLPRFASNLDLDTTVERRARD 236
>gi|344210357|ref|YP_004794677.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|343781712|gb|AEM55689.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
Length = 286
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 107/222 (48%), Gaps = 13/222 (5%)
Query: 23 DTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTA- 81
+++C CGLV+ ++D EWR F ++ +D R G PL GLST I + T
Sbjct: 21 ESVCGSCGLVVGEDAIDPGPEWRSFDDDDTDR--ARTGAPLTRSRHDRGLSTKIGRSTRL 78
Query: 82 GGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVE 138
G L + R SS +RN + AF I + + L I+DRA +++ +
Sbjct: 79 KGRKRRQFARLRREHNRAQISSKRERNKVYAFTEIRRIISSMSLSDAIRDRACVLFESAQ 138
Query: 139 DQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198
++ L+GR E AA +Y CR E RTV E C+VA T+ E+ A + + + L
Sbjct: 139 NEDLLQGRTLEGFAAAAIYATCRTEGVARTVDELCTVAKA-TQSELRAAYDALNREL--- 194
Query: 199 MGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
+ G I +Y+ RF + L + + A++ V +++D
Sbjct: 195 ---GLPTGPIDPREYVPRFATTLDLPTAVRQRAEQLVDEAQD 233
Score = 37.7 bits (86), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 120 LGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179
L L T ++ RA ++ + +D+ + GRN + AACLY A ++ + T E A+ T
Sbjct: 214 LDLPTAVRQRAEQLVDEAQDRGLVSGRNPAGVAAACLYTAAQERDVALTQAEAAETADVT 273
>gi|333911004|ref|YP_004484737.1| transcription initiation factor IIB [Methanotorris igneus Kol 5]
gi|333751593|gb|AEF96672.1| Transcription initiation factor IIB [Methanotorris igneus Kol 5]
Length = 343
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 113/236 (47%), Gaps = 18/236 (7%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
T V+ D+ + +C CG VL+ D EWR F +E RVG P+ + GL
Sbjct: 53 TNVIKDYERAEIVCENCGCVLQQNLFDVGPEWRAFDHEQRVKRS-RVGAPMTYTIHDKGL 111
Query: 73 STVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFKSISAMSDRLGL 122
STVI + +S + L K Q R S +RNL A + ++ +LGL
Sbjct: 112 STVIDWRNKDSYGKDISANKRAQLYRLRKWQRRIRVSDASERNLAFALSELDRIASKLGL 171
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+++ A +Y+ ++ +RGR+ E + AA LY ACR+ PRT+ E A+ +K
Sbjct: 172 PRNVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCRVPRTLDEIAE-ASRVDRK 230
Query: 183 EIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKS 238
EIGR F+ + L +++ + DY+ RF S LG+ + A +QK+
Sbjct: 231 EIGRTYRFLAREL------GIKLAPTNPIDYVPRFASELGLPGEVESKAIAILQKA 280
>gi|393234326|gb|EJD41890.1| cyclin-like protein [Auricularia delicata TFB-10046 SS5]
Length = 345
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 117/251 (46%), Gaps = 24/251 (9%)
Query: 6 CADCKRL-TEVVFDHSAGDTICSECGLVLEAYSVDETSE------WRIFANESSDHDPVR 58
C DC+ +V + S+GD +C++CGLVL VD SE R FA+ D DP R
Sbjct: 27 CPDCRDPHPRIVEEFSSGDLVCADCGLVLGDRIVDTRSECARRASGRTFADNEGD-DPSR 85
Query: 59 VGGPLNPLLSGG-GLSTVIA--KPTAGGSTEL---LSGSLGKLQARSSHPDRNLIQAFKS 112
VG +PLL LST I G + EL L G++ ++A + +A +
Sbjct: 86 VGAAQDPLLDEAEQLSTSIGFRDDGTGAARELRRALQGTVAGIRASRTQ------RALRD 139
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENK-PRTVKE 171
I G+ + A ++K+VE+Q+ LR + +A+VA C+++ACR + RT +
Sbjct: 140 IGDKCAAFGMPLAVAASAKLLFKRVEEQRLLRSQAPDAVVATCIFVACRMDRATARTFHD 199
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLE-AEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKA 230
C+ +K + R + + + A GQ G A D L R CS L +
Sbjct: 200 ICTKTR-VPRKVLARCFRVLERAFQLAPAGQGAVAGA-RAEDLLARHCSRLALRPGVATC 257
Query: 231 AQEAVQKSEDL 241
A + ++ DL
Sbjct: 258 AASLIVRARDL 268
>gi|269866459|ref|XP_002652280.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
gi|220062817|gb|EED41774.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
Length = 175
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 81/153 (52%), Gaps = 9/153 (5%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + V+ D+ G +C +CG V VDE EWR F+ +S+ DP RVG +NP
Sbjct: 14 CNECGEVNSVIEDYRNGFNVCGKCGCVFREKIVDEGGEWRNFS-DSTKGDPSRVGSAINP 72
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLV 123
L L TVI+ + S +L ++Q ++ PDR L FK I + +R L
Sbjct: 73 FLDVEQLDTVISAGSGANSY-----NLNRIQMKNYMRGPDRVLKNGFKLIQSFCERGFLT 127
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACL 156
TI D+A I+K VE +K L+GR + + AC+
Sbjct: 128 QTIIDKAQAIFKDVESKKLLKGRIRRCM-GACI 159
>gi|429190412|ref|YP_007176090.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|429134630|gb|AFZ71641.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
Length = 324
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
YC +C +V D +T+CS+CGLV+E +D EWR F + D + RVG P
Sbjct: 28 YCPECG--GRLVSDAEHAETVCSDCGLVVEEDEIDRGPEWRAFDSAEKD-EKSRVGAPTT 84
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSL-----------GKLQARSSHPDRNLIQAFKSI 113
++ GLST I + LS + + R S +RNL QA I
Sbjct: 85 NMMHDQGLSTNIGWQDKDAYGKALSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGEI 143
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M+ LGL +++ A+ IY++ ++ L GR+ E + A LY A RQ PR++ E
Sbjct: 144 DRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATAALYAAARQAGTPRSLDEIS 203
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
+V+ K E+ R ++++ L +E+ Y+ RF S+L + ++ + A+E
Sbjct: 204 AVSR-VEKMELTRTYRYVIREL------GLEVQPADPESYVPRFVSDLDLPDETERMARE 256
Query: 234 AVQ 236
++
Sbjct: 257 LLE 259
>gi|403221784|dbj|BAM39916.1| transcription initiation factor TFIIb [Theileria orientalis strain
Shintoku]
Length = 339
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 109/239 (45%), Gaps = 14/239 (5%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES---SDHDPVRVGGP 62
C+ CK + VV DH G+ +C CG VLE + E EWR F ES + + RVG
Sbjct: 15 CSACKEASVVVVDHVEGNQLCLNCGRVLEDVLISEQQEWRNFNTESLGQAGAEKSRVGEV 74
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGL 122
+ L +T I GGS ++ L L + DR+L +F + + D + +
Sbjct: 75 NDVWLDATSSTTFI-----GGSKKM--QQLQNLMSNFESSDRSLKTSFGILRTICDSMNI 127
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+ +R+ EI K++ L+ R + A +Y+A R+ + R+++E T K
Sbjct: 128 REQVIERSKEILKELNQLGHLKSRCNSLNILAVIYLALRESSVSRSLRELAIYDRNLTVK 187
Query: 183 EIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDL 241
++GRA + L+ + T S + RFCS L +TN+ + + +S L
Sbjct: 188 DLGRA----INRLKKVLPNRGNAPTEDVSQLIPRFCSKLNLTNEIITLCETVAYRSSLL 242
>gi|448350949|ref|ZP_21539759.1| Zinc finger TFIIB-type domain-containing protein [Natrialba
taiwanensis DSM 12281]
gi|445635137|gb|ELY88308.1| Zinc finger TFIIB-type domain-containing protein [Natrialba
taiwanensis DSM 12281]
Length = 303
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 107/226 (47%), Gaps = 21/226 (9%)
Query: 20 SAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA-- 77
+A +T+C +CGLVL +D EWR F ++ D D R G PL GLST I
Sbjct: 20 TATETVCEDCGLVLGEDPIDRGPEWRSFVDD--DTDRRRTGAPLTRSRHDRGLSTQIGYG 77
Query: 78 KPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
+ + ++G + +R S+ + N + F I ++ RL L ++
Sbjct: 78 SDSVPDRSTRITGRKRRQLSRLRREHTRATISTKAEYNQVLGFTEIKRITARLSLPDCLR 137
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
++A ++ + + L+GR+ E AAC+Y +CR + PRT+ E ++A T+ E+ A
Sbjct: 138 EQACALFDSAQSENLLQGRSIEGFAAACVYTSCRVRSLPRTIDEVVTIA-AATEAELKAA 196
Query: 188 KEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
+ + + L + G I YL RF SNL + + A+E
Sbjct: 197 YDALNRDL------GLPTGPIDPGQYLPRFASNLDLDTAVERRARE 236
>gi|222481293|ref|YP_002567529.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222454669|gb|ACM58932.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 309
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 109/229 (47%), Gaps = 18/229 (7%)
Query: 23 DTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAG 82
+T C +CGL+++ +D +WR + NE +D RVG P GLST I + G
Sbjct: 36 ETACEDCGLIIDEQRIDHGPDWRSY-NEKTDSQS-RVGPPRTVARHDNGLSTEIGRWRDG 93
Query: 83 GSTELLSGSLGKL-QARSSHP--------DRNLIQAFKSISAMSDRLGLVTTIKDRANEI 133
+L +L + R H +RNL + ++ L L +I+++A ++
Sbjct: 94 NGNQLAGSKRSRLSRMRREHSRGRFGSKSERNLAHGLGEVRRITSVLDLAESIRNQACQL 153
Query: 134 YKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
++ +++ LRGR+ EAI A +Y ACR RT+ E ++A ++ + K
Sbjct: 154 FRSAQNEDLLRGRSIEAIAAGSVYSACRCNGLGRTIDEIAALARVNQQRVMN-----AYK 208
Query: 194 HLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLD 242
L E+G + I S ++ R S LG+++Q AQ + SE +D
Sbjct: 209 VLNQELGLPTQ--PIRPSGFVPRLASELGVSDQVRHRAQRLAEHSETVD 255
>gi|448664209|ref|ZP_21684012.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|445774854|gb|EMA25868.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 286
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 106/222 (47%), Gaps = 13/222 (5%)
Query: 23 DTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTA- 81
+++C CGLV+ ++D EWR F ++ +D R G PL GLST I + T
Sbjct: 21 ESVCGSCGLVVGEDAIDPGPEWRSFDDDDTDR--ARTGAPLTRSRHDRGLSTKIGRSTRL 78
Query: 82 GGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVE 138
G L + R SS +RN + AF I + + L I+DRA +++ +
Sbjct: 79 KGRKRRQFARLRREHNRAQISSKRERNKVYAFTEIRRIISSMALSDAIRDRACVLFESAQ 138
Query: 139 DQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198
++ L+GR E AA +Y CR E RTV E C+VA T+ E+ A + + + L
Sbjct: 139 NEDLLQGRTLEGFAAAAVYATCRTEGVARTVDELCTVAKA-TQAELRAAYDALNREL--- 194
Query: 199 MGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
+ G I +Y+ RF + L + + A+ V +++D
Sbjct: 195 ---GLPTGPIDPREYVPRFATTLDLPTAVRQRAERLVDEAQD 233
>gi|448354791|ref|ZP_21543546.1| Zinc finger TFIIB-type domain-containing protein [Natrialba
hulunbeirensis JCM 10989]
gi|445637122|gb|ELY90278.1| Zinc finger TFIIB-type domain-containing protein [Natrialba
hulunbeirensis JCM 10989]
Length = 332
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 115/246 (46%), Gaps = 25/246 (10%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGG 61
+ ++C +C + + +TIC ECG V++ +D EWR FA++ +D R G
Sbjct: 6 SSTHCPEC----DGILRERETETICEECGAVVDTDPIDRGPEWRSFADDPTDRR--RTGA 59
Query: 62 PLNPLLSGGGLSTVIAKPTAG--GSTELLSG----SLGKLQ---ARS---SHPDRNLIQA 109
PL GLST+I + ++G L +LQ RS + + N I+A
Sbjct: 60 PLTRSRHDRGLSTMIGYGPGSQFDRSTRITGRKRRQLTRLQREHTRSQIGTKAEYNQIRA 119
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
F I + RL L I ++A ++ + + L+GR+ E AA +Y CR + PRT+
Sbjct: 120 FNEIKCIVARLSLTDPITEQACALFDSAQSENLLQGRSLEGFAAAVVYAICRIHDLPRTI 179
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVK 229
E +VA+ + E+ A L E+G +E G I + YL RF S L + +
Sbjct: 180 DEILTVASA-DEAELKAA----YSALNRELG--LETGPIDPTHYLPRFASELDLEMPTER 232
Query: 230 AAQEAV 235
A E V
Sbjct: 233 RAHEHV 238
>gi|448318490|ref|ZP_21508011.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
gi|445599034|gb|ELY53079.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
Length = 444
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 107/228 (46%), Gaps = 22/228 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D +T+C +CGLV+E +D EWR F D + RVG P
Sbjct: 30 CPECG--GRLISDTEHAETVCQDCGLVVEEDEIDRGPEWRAFDAAEKD-EKSRVGAPTTN 86
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTT 125
+ S + L + + R S +RNL QA I M+ LGL
Sbjct: 87 MXS-----------RQRQKMQRLRTWNERFRTRDSK-ERNLKQALGEIDRMASALGLPEN 134
Query: 126 IKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIG 185
+++ A+ IY++ ++ L GR+ E + + LY A RQ PR++ E +V+ K E+
Sbjct: 135 VRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEISAVSR-VEKMELT 193
Query: 186 RAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
R +I++ L +E+ Y+ RF S+L ++++ + A++
Sbjct: 194 RTYRYIIREL------GLEVQPADPESYVPRFVSDLDLSDETERMARD 235
>gi|25396143|pir||C88922 protein W03F9.5 [imported] - Caenorhabditis elegans
Length = 148
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 67/114 (58%), Gaps = 4/114 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ DH AGD +C CGLV+ VD +EWR F+NE S +DP RVG P NPLLSGG LST
Sbjct: 15 LIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPLLSGGDLST 74
Query: 75 VIAKPTAGGSTELLSGSLGKLQARS-SHPDRNLIQAFKSISAMSDRLGLVTTIK 127
IA G ++ SL Q +S ++ DR + A I MS+R+ L I+
Sbjct: 75 TIAVGFGGSDSD---NSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNIQ 125
>gi|257387108|ref|YP_003176881.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257169415|gb|ACV47174.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 286
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 104/225 (46%), Gaps = 17/225 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + D SA + +C++CGLV++ +D EWR F E R G PL
Sbjct: 8 CPEC----DGAIDASAREAVCTQCGLVVDEDQLDRGPEWRSF--EDDGEQKARTGAPLTR 61
Query: 66 LLSGGGLSTVIAKPTA-GGSTELLSGSLGKLQARS---SHPDRNLIQAFKSISAMSDRLG 121
GLST I + T G L + +R+ S DRN F I + RL
Sbjct: 62 SRHDRGLSTEIGRSTRLKGRKRRQMARLRREHSRAQTGSKRDRNQRIGFIEIRRLVSRLD 121
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +TI+DRA +++ ++ L GR+ E AA +Y CR RTV+E + A +T
Sbjct: 122 LSSTIRDRACVLFESAQEADLLVGRSIEGFAAAAVYATCRTSEIARTVEEVAADAQAST- 180
Query: 182 KEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQ 226
E+ A + I + L + G I +YL RF S L + ++
Sbjct: 181 GELRVAYDAINREL------GLPTGPIDPREYLPRFASELDVPHE 219
>gi|448445090|ref|ZP_21590145.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445685396|gb|ELZ37750.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 348
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 101/212 (47%), Gaps = 18/212 (8%)
Query: 39 DETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA---KPTAGGSTELLSGS---- 91
D EWR F N S + RVG P + GL+T I K G S S
Sbjct: 57 DPGPEWRAF-NHSERQEKSRVGAPTTKTMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHR 115
Query: 92 LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQ 148
L K Q R D RNL A I M+ LG+ ++++ A+ IY++ ++ +RGR+
Sbjct: 116 LRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSI 175
Query: 149 EAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTI 208
E + A LY ACR+E PR+++E V+ +KEIGR +I + L +EM +
Sbjct: 176 EGVSTAALYAACRKEGIPRSLEEISDVSR-VDRKEIGRTYRYISQEL------GLEMRPV 228
Query: 209 HASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
Y+ RF S L ++ + A E ++ + D
Sbjct: 229 DPKKYVPRFSSELELSEEVQSKANEIIETTAD 260
>gi|433593095|ref|YP_007282581.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|433308133|gb|AGB33943.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
Length = 325
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 121/250 (48%), Gaps = 34/250 (13%)
Query: 4 SYCADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
+ C +C+ R+T +A +TIC +CGLV++ +D EWR F + + R G P
Sbjct: 39 NQCPECEGRVT-----TNAVETICEDCGLVIDEQRIDHGPEWRAFDEDERE----RTGAP 89
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSG-------------SLGKLQARSSHPDRNLIQA 109
L GLST I + T EL SG + G+ Q+++ +RNL
Sbjct: 90 LTAARHDRGLSTEIGRGTDANGNEL-SGQKRRRLTRMRREQTRGRFQSKA---ERNLAHG 145
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
+ +S L L TI+D+A ++++ +++ L+GR+ EA+ AA +Y ACR +PRT+
Sbjct: 146 LSEVRRISSALELSETIRDQACQLFRSAQNEDLLQGRSIEAMAAASVYGACRCNGRPRTL 205
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVK 229
+ A + E R L E+G + + S ++ R S L +++Q +
Sbjct: 206 DDITESA----RVEQSRVTNAYTT-LNTELGLPAQ--PVTPSAFVPRLASELDVSDQIRQ 258
Query: 230 AAQEAVQKSE 239
A++ + SE
Sbjct: 259 RARQLAEASE 268
>gi|448335856|ref|ZP_21524987.1| transcription initiation factor TFB [Natrinema pellirubrum DSM
15624]
gi|445615482|gb|ELY69129.1| transcription initiation factor TFB [Natrinema pellirubrum DSM
15624]
Length = 308
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 121/250 (48%), Gaps = 34/250 (13%)
Query: 4 SYCADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
+ C +C+ R+T +A +TIC +CGLV++ +D EWR F + + R G P
Sbjct: 22 NQCPECEGRVT-----TNAVETICEDCGLVIDEQRIDHGPEWRAFDEDERE----RTGAP 72
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSG-------------SLGKLQARSSHPDRNLIQA 109
L GLST I + T EL SG + G+ Q+++ +RNL
Sbjct: 73 LTAARHDRGLSTEIGRGTDANGNEL-SGQKRRRLTRMRREQTRGRFQSKA---ERNLAHG 128
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
+ +S L L TI+D+A ++++ +++ L+GR+ EA+ AA +Y ACR +PRT+
Sbjct: 129 LSEVRRISSALELSETIRDQACQLFRSAQNEDLLQGRSIEAMAAASVYGACRCNGRPRTL 188
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVK 229
+ A + E R L E+G + + S ++ R S L +++Q +
Sbjct: 189 DDITESA----RVEQSRVTNAYTT-LNTELGLPAQ--PVTPSAFVPRLASELDVSDQIRQ 241
Query: 230 AAQEAVQKSE 239
A++ + SE
Sbjct: 242 RARQLAEASE 251
>gi|408404447|ref|YP_006862430.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408365043|gb|AFU58773.1| putative transcription initiation factor IIB [Candidatus
Nitrososphaera gargensis Ga9.2]
Length = 313
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 116/245 (47%), Gaps = 19/245 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
CA C + +VFD + +CS CG+V++ EWR ++ E + R G P +
Sbjct: 21 CALCNSKS-IVFDSETSEAVCSSCGMVIKDNIESMGPEWRSYSGEDIESKS-RTGMPSSL 78
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS----------LGKLQARSSHPDRNLIQAFKSISA 115
GLST I+ + +S K+ + + RNL AF +S
Sbjct: 79 AFHDMGLSTFISYSNVDANGVAISAEQRSKVQRMRRWNKISSNNRSYHRNLKNAFAILST 138
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
+ D+L L T+ ++A Y+K D+K ++GR+ A++ A +Y ACR + PRT++E +
Sbjct: 139 IKDKLSLSDTLIEKAAYNYRKALDKKIIKGRSIRALIVAAVYAACRDLSVPRTLEEISAA 198
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
AN T G+ +V++L+ + + I ++ YL R + ++ + + A E +
Sbjct: 199 AN-TDAIFAGKCYRLLVQNLD------LRLPVIDSNKYLARISNKAKVSEKTYRNALEML 251
Query: 236 QKSED 240
+D
Sbjct: 252 STIKD 256
>gi|167045037|gb|ABZ09701.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_APKG8G15]
Length = 300
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 115/238 (48%), Gaps = 18/238 (7%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D G+ C CG V E R F ++ + + VG L + GLST
Sbjct: 20 LITDAETGEVFCGACGFVSPERIESPGPERRSFPDDRGNKERTGVGTSLT--IHDQGLST 77
Query: 75 VIAKPTAGGSTELLSGSLGKLQAR------SSHP---DRNLIQAFKSISAMSDRLGLVTT 125
VI + + LS S+ K R SH DRN QAF + + D+L L +
Sbjct: 78 VINPTNRDATGKPLSSSMKKTLKRLRVWDSRSHNKPIDRNFKQAFNELYRLKDKLTLSDS 137
Query: 126 IKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIG 185
+ ++A IY+K ++K ++GR A++A+ LY ACR+ PRT+K+ N K+++
Sbjct: 138 VVEKAAYIYRKAINKKLVKGRTISALMASALYAACREVGTPRTLKDISDTTN-IKKRDLA 196
Query: 186 RAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
+V L+ +++ +++ + R S +G++ + + A E ++K+E+ +I
Sbjct: 197 ANYRLLVNELD------LKIPVVNSVHNVARIASKIGISEKTKRIATEILRKAEESEI 248
>gi|448680026|ref|ZP_21690465.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445769674|gb|EMA20747.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
Length = 286
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 105/222 (47%), Gaps = 13/222 (5%)
Query: 23 DTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTA- 81
+++C CGLV+ ++D EWR F ++ +D R G PL GLST I + T
Sbjct: 21 ESVCRSCGLVVGEDAIDPGPEWRSFDDDDTDR--ARTGAPLTRSRHDRGLSTKIGRSTRL 78
Query: 82 GGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVE 138
G L + R SS +RN + AF I + + L I+DRA +++ +
Sbjct: 79 KGRKRRQFARLRREHNRAQISSKRERNKVYAFTEIRRIISSMALSDAIRDRACVLFESAQ 138
Query: 139 DQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198
++ L+GR E AA +Y CR E RTV E C+VA T E+ A + + + L
Sbjct: 139 NEALLQGRTLEGFAAAAIYATCRTEGVARTVDEICTVAKA-TPAELRAAYDALNREL--- 194
Query: 199 MGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
+ G I +Y+ RF + L + + A+ V +++D
Sbjct: 195 ---GLPTGPIDPREYVPRFATTLDLPTAVRQRAERLVDEAQD 233
Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 120 LGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179
L L T ++ RA + + +D+ + GRN + AACLY A ++++ T E A+ T
Sbjct: 214 LDLPTAVRQRAERLVDEAQDRGLVSGRNPAGVAAACLYTAAQEQDVALTQAEAAETADVT 273
>gi|448337251|ref|ZP_21526332.1| transcription initiation factor TFB [Natrinema pallidum DSM 3751]
gi|445626359|gb|ELY79707.1| transcription initiation factor TFB [Natrinema pallidum DSM 3751]
Length = 308
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 113/233 (48%), Gaps = 28/233 (12%)
Query: 20 SAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKP 79
+A +TIC +CGLV++ +D EWR F + + R G PL GLST I +
Sbjct: 34 NAVETICEDCGLVIDEQRIDHGPEWRAFDEDERE----RTGAPLTAARHDRGLSTEIGRG 89
Query: 80 TAGGSTELLSG-------------SLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTI 126
T EL SG + G+ Q+++ +RNL + +S L L TI
Sbjct: 90 TDANGNEL-SGQKRRRLFRMRREQTRGRFQSKA---ERNLAHGLSEVRRVSSVLELSETI 145
Query: 127 KDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGR 186
+D+A ++++ +++ L+GR+ EA+ AA +Y ACR +PRT+ + A + E R
Sbjct: 146 RDQACQLFRSAQNEDLLQGRSVEAMAAASVYGACRCNGRPRTLDDITESA----RVEQSR 201
Query: 187 AKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSE 239
L E+G + + S ++ R S L +++Q + A++ + SE
Sbjct: 202 VTNAYTT-LNTELGLPAQ--PVTPSAFVPRLASELDVSDQIRQRARQLAEASE 251
>gi|336121697|ref|YP_004576472.1| transcription initiation factor IIB [Methanothermococcus
okinawensis IH1]
gi|334856218|gb|AEH06694.1| Transcription initiation factor IIB [Methanothermococcus
okinawensis IH1]
Length = 336
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 113/236 (47%), Gaps = 18/236 (7%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
V+ D+ + +C++CG VL+ D EWR F +E RVG P+ + GLST
Sbjct: 48 VIKDYERAEIVCADCGCVLQQNLFDVGPEWRAFDHEQRVKRS-RVGAPMTYTIHDKGLST 106
Query: 75 VIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVT 124
VI + +S L K Q R S +RNL A + ++ +LGL
Sbjct: 107 VIDWRNKDSYGKDISADKRAQLYRLRKWQRRIRVSDASERNLAFALSELDRIASKLGLPR 166
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+++ A +Y+ ++ +RGR+ E + AA LY ACR+ PRT+ E ++ +KEI
Sbjct: 167 NVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEISR-VDRKEI 225
Query: 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
GR FI + L+ + + + DY+ RF S L + + A +QK+ +
Sbjct: 226 GRTYRFISRELK------IRLAPTNPIDYVPRFASELKLPGEVESKAIAILQKANE 275
>gi|448360606|ref|ZP_21549237.1| Transcription factor TFIIB cyclin-related protein [Natrialba
asiatica DSM 12278]
gi|445653219|gb|ELZ06091.1| Transcription factor TFIIB cyclin-related protein [Natrialba
asiatica DSM 12278]
Length = 271
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 98/215 (45%), Gaps = 18/215 (8%)
Query: 31 LVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGSTELLSG 90
+V+E +D EWR F N + RVG P + GL+T I LS
Sbjct: 1 MVIEEEVIDRGPEWRAF-NAAERDSKSRVGAPTTQTMHDKGLTTTIDWKNKDAYGRSLSS 59
Query: 91 S-------LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQ 140
L K Q R D RNL A M+ LG+ ++++ A+ +Y++ D+
Sbjct: 60 DKRSQMNRLRKWQERIRTKDAGERNLQFALSETDRMASALGVPRSVREVASVLYRRALDE 119
Query: 141 KPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMG 200
+RGR+ E + + LY ACR E PR++ E +V+ + EIGR +I + L
Sbjct: 120 DLIRGRSIEGVATSTLYAACRMEGIPRSLDEVAAVSR-VNRMEIGRTYRYISQEL----- 173
Query: 201 QSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+EM ++ Y+ RFCS L + + A E +
Sbjct: 174 -GLEMEPVNPKKYVPRFCSELDLPEEVQAKANEII 207
>gi|448423775|ref|ZP_21582108.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445683032|gb|ELZ35437.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
Length = 396
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 123/307 (40%), Gaps = 89/307 (28%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD------------ 53
C +C ++ D G+T+C +CGLV+E +D EWR F ++ D
Sbjct: 30 CPECG--GQLATDTEHGETVCVDCGLVVEEDEIDRGPEWRAFDSKEKDSKSRVGAPTTNM 87
Query: 54 -HDP---------------------VRVGGPLNPLLSGGGLSTVIA---KPTAGGS---- 84
HD RVG P ++ GLST I K G S
Sbjct: 88 MHDKGLSTNIGWQDKDAYGKSLDSKSRVGAPTTNMMHDKGLSTNIGWQDKDAYGKSLSSR 147
Query: 85 ---------------------TELLSGSLGKLQARSSH---PD---------------RN 105
L +LG++ +S PD RN
Sbjct: 148 QREKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLPDNVRETASVIYRRALERN 207
Query: 106 LIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENK 165
L QA I M+ LGL +++ A+ IY++ D+ L GR+ E + A LY A RQ
Sbjct: 208 LKQALGEIDRMASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGT 267
Query: 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTN 225
PR++ E V+ K EI R ++V+ L+ +E+ Y+ RF S+LG+++
Sbjct: 268 PRSLDEIAGVSR-VEKDEIARTYRYVVRELK------LEIQPADPESYVPRFASDLGLSD 320
Query: 226 QAVKAAQ 232
+A + A+
Sbjct: 321 EAERRAR 327
>gi|448310263|ref|ZP_21500109.1| transcription initiation factor IIB [Natronolimnobius
innermongolicus JCM 12255]
gi|445608424|gb|ELY62275.1| transcription initiation factor IIB [Natronolimnobius
innermongolicus JCM 12255]
Length = 354
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 121/280 (43%), Gaps = 55/280 (19%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D +T+C +CGLV+E +D EWR F D + RVG P
Sbjct: 31 CPEC--AGRLVSDAEHAETVCEDCGLVVEEGEIDRGPEWRAFDAAEKD-EKSRVGAPTTN 87
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 88 MMHDQGLSTNIGWQDKDAYGRS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 144
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKV--EDQKPLR-------------------------- 144
I M+ LGL +++ A+ IY++ ED P R
Sbjct: 145 IDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYASSVIYRRALEEDLL 204
Query: 145 -GRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSV 203
GR+ E + A LY + RQ PR++ E +V+ K E+ R ++++ L +
Sbjct: 205 PGRSIEGVATASLYASARQAGTPRSLDEISAVSR-VEKDEVARTYRYVIREL------GL 257
Query: 204 EMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
E+ Y+ RF S+L ++++ + A+ + ++D I
Sbjct: 258 EVKPADPESYVPRFASDLELSDETERRARSLLSTAKDRGI 297
>gi|169609643|ref|XP_001798240.1| hypothetical protein SNOG_07914 [Phaeosphaeria nodorum SN15]
gi|160701885|gb|EAT84190.2| hypothetical protein SNOG_07914 [Phaeosphaeria nodorum SN15]
Length = 346
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 126/270 (46%), Gaps = 44/270 (16%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C DC+ + +V + S+GDT+C CG VL ++D SEWR H+ + ++
Sbjct: 38 CPDCREMPPNLVEEFSSGDTVCGSCGRVLGERAIDTRSEWR--------HENI-----VD 84
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSH--PDRNLIQAFKSISAMSDRLGL 122
G LST I G L L + +S+H +++L A+ I+ + D +
Sbjct: 85 NSTDGSQLSTEIGFGDGG----LRVRELSRAHNKSNHDKANKSLQAAYSQIATLCDSQNI 140
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+ A +++ +D K +G++Q+AI+A C++IACR + R+ +E + N +KK
Sbjct: 141 SKPTAETAKLLFRVTDDAKLFKGKSQDAIIAGCIFIACRNHGQQRSFREIFKMTN-VSKK 199
Query: 183 EIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNL--GMTNQAVKAAQEAVQKSED 240
E+GR K LEA + ++ ++GT AS L +N G+T A A K
Sbjct: 200 EVGRT----FKALEAFLQKNQKVGT--ASSNLLHDTTNFQTGVTTSAENLMPRACNK--- 250
Query: 241 LDIRLILVFFSLFLVETHIQLIVWAFMRCI 270
+ET+IQL+ R +
Sbjct: 251 ------------LGLETYIQLVAEECARTV 268
>gi|349804613|gb|AEQ17779.1| putative general transcription factor iib isoform 2 [Hymenochirus
curtipes]
Length = 200
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 87/162 (53%), Gaps = 22/162 (13%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLSGG L+T
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPLLSGGDLTT 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S K Q R +++S+ SDR + T I +A E+
Sbjct: 83 MIGKGTGTASFDEFGNS--KYQNR------------RTMSS-SDRAMMNTYIARKAVEL- 126
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVA 176
D P GR+ ++ AA +Y+A + + RT KE +A
Sbjct: 127 ----DLVP--GRSPISVAAAAIYMASQASAEKRTQKEIGDIA 162
>gi|448436023|ref|ZP_21587039.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|445683183|gb|ELZ35586.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
Length = 384
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 120/268 (44%), Gaps = 50/268 (18%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD------------ 53
C +C + D G+T+CS+CGLV+EA SVD EWR F + D
Sbjct: 60 CPECG--GRLASDTEHGETVCSDCGLVVEADSVDRGPEWRAFNSGERDSKSRVGAPTTNM 117
Query: 54 -HDP----------------VRVGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLG--- 93
HD RVG P ++ GLST I + LSG
Sbjct: 118 MHDKGLSTNIGWQDKDAYXKSRVGAPTTNMMHDKGLSTNIGWQDKDAYGKSLSGRQRRRM 177
Query: 94 --------KLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRG 145
+ + R S +RNL QA I M+ LGL +++ A+ IY++ + L G
Sbjct: 178 QRLRTWNERFRTRDSK-ERNLKQALGEIDRMASALGLPDNVRETASVIYRRALSENLLPG 236
Query: 146 RNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEM 205
R+ E + A LY A RQ PR++ EF +V+ K E+ R ++V+ E+G V+
Sbjct: 237 RSIEGVATAALYAAARQVGNPRSLDEFTAVSR-VEKMELTRTYRYVVR----ELGLRVQ- 290
Query: 206 GTIHASDYLRRFCSNLGMTNQAVKAAQE 233
+ Y+ RF S L ++++ + A+E
Sbjct: 291 -PADPTSYVPRFVSRLDLSDETERRARE 317
>gi|321260170|ref|XP_003194805.1| transcription initiation factor IIB [Cryptococcus gattii WM276]
gi|317461277|gb|ADV23018.1| Transcription initiation factor IIB, putative [Cryptococcus gattii
WM276]
Length = 438
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 118/255 (46%), Gaps = 35/255 (13%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C +C+ +V +++ GD +L VD SEWR FA + + DP RVG N
Sbjct: 77 CPNCRTDPPNIVEEYAKGD--------LLGDRIVDTRSEWRTFAGDENGDDPSRVGDAGN 128
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDR---------NLIQAFKSISA 115
PLL L T+I+ G T + L + QAR++ L F I
Sbjct: 129 PLLGSNHLDTMISHKD--GRTGIAR-DLNRAQARANTLSNGIYGKSSVAQLSAVFSRIGE 185
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
D + L +++RA +YK V++ + ++G+N+ A++AAC+ ACR RT +E C
Sbjct: 186 KCDAMQLPRGVRERAQHVYKIVDEARAIKGKNEPAVIAACIVYACRDAKVHRTFQEVCK- 244
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASD--------YLRRFCSNLGMTNQA 227
A +KKE+G+ + +++ Q M ++H S+ L RF + L + N
Sbjct: 245 ALKISKKELGQVFNHVKSVVQSSSAQG-SMVSVHGSNNAQESAEGLLGRFANYLDLGNAV 303
Query: 228 VKA----AQEAVQKS 238
A EAV KS
Sbjct: 304 FNVSKHIAGEAVAKS 318
>gi|448348263|ref|ZP_21537115.1| Transcription factor TFIIB cyclin-related protein [Natrialba
taiwanensis DSM 12281]
gi|445643361|gb|ELY96413.1| Transcription factor TFIIB cyclin-related protein [Natrialba
taiwanensis DSM 12281]
Length = 271
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 98/215 (45%), Gaps = 18/215 (8%)
Query: 31 LVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGSTELLSG 90
+++E +D EWR F N + RVG P + GL+T I LS
Sbjct: 1 MIIEEEVIDRGPEWRAF-NAAERDSKSRVGAPTTQTMHDKGLTTTIDWKNKDAYGRSLSS 59
Query: 91 S-------LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQ 140
L K Q R D RNL A M+ LG+ ++++ A+ +Y++ D+
Sbjct: 60 DKRSQMNRLRKWQERIRTKDAGERNLQFALSETDRMASALGVPRSVREVASVLYRRALDE 119
Query: 141 KPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMG 200
+RGR+ E + + LY ACR E PR++ E +V+ + EIGR +I + L
Sbjct: 120 DLIRGRSIEGVATSTLYAACRMEGIPRSLDEVAAVSR-VNRMEIGRTYRYISQEL----- 173
Query: 201 QSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+EM ++ Y+ RFCS L + + A E +
Sbjct: 174 -GLEMEPVNPKKYVPRFCSELDLPEEVQAKANEII 207
>gi|76802797|ref|YP_330892.1| transcription initiation factor TFB 5 [Natronomonas pharaonis DSM
2160]
gi|76558662|emb|CAI50254.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 327
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 121/248 (48%), Gaps = 26/248 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + +H G+T+CS+CGLV+E +D EWR F + D + RVG P
Sbjct: 33 CPECDARLQADTEH--GETVCSDCGLVVEEDEIDRGPEWRAFDSAEKD-EKSRVGAPTTN 89
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 90 MMHDKGLSTNIGWQDKDAYGNS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 146
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ + L GR+ E + A LY A RQ N PR++ E
Sbjct: 147 IERMASALGLPENVRETASVIYRRALSEDLLPGRSIEGVATAALYAAARQANVPRSLDEV 206
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ + E+ R +I++ L ++E+ Y+ RF S+L +++ + A+
Sbjct: 207 EHVSR-VDRMELTRTYRYIIREL------NLEVQPADPESYIPRFVSDLDRSDEVERRAR 259
Query: 233 EAVQKSED 240
+ + + +
Sbjct: 260 QLIDNARE 267
>gi|357289650|gb|AET72963.1| transcription initiation factor IIB [Phaeocystis globosa virus 12T]
gi|357292445|gb|AET73781.1| transcription initiation factor IIB [Phaeocystis globosa virus 14T]
Length = 389
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 118/255 (46%), Gaps = 17/255 (6%)
Query: 2 ADSYCAD---CKRLTEVVFDHSAGDTIC--SECGLVLEAYSVDETSEWRIF-ANESSDHD 55
D C D C +F G C ++CG++ + ++D +EWR + A+++ D
Sbjct: 73 TDENCKDINICSACKTALFVGDEGFLSCPNTKCGIIYKD-NLDLGAEWRFYGADDNQSSD 131
Query: 56 PVRVGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHP--DRNLIQAFKSI 113
P R G P+NPLL S + P G + L + A S P +++ F+ I
Sbjct: 132 PTRCGMPINPLLKESSYSCKVLCP---GKLSHENWKLKRYTAWQSMPYKEKSQYDEFQLI 188
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
+ +S G+ I D A +K + + + RG N++ I+AA +YI+CR + PRT KE
Sbjct: 189 TIISQNAGISKMIIDEATRYHKIISESQTFRGLNRDGIIAASIYISCRVNDFPRTAKEIA 248
Query: 174 SV---ANGTTKKEIGRAKEFI--VKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAV 228
+ N + + A I ++H A+ +++ ++ R+CS L + N+
Sbjct: 249 DIFHLDNTSATRGCKNALSIINDIEHANAQSDGIIKLSKTTPLSFIERYCSKLNINNELT 308
Query: 229 KAAQEAVQKSEDLDI 243
+ +K + L++
Sbjct: 309 MLCKFLAKKIDRLNL 323
>gi|448476740|ref|ZP_21603675.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445815191|gb|EMA65123.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 307
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 100/225 (44%), Gaps = 29/225 (12%)
Query: 22 GDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA---K 78
G+ I E GL++E +D EWR F N S RVG P + GL+T I K
Sbjct: 39 GELIHEETGLIVEEEQIDPGPEWRAF-NHSERQSKSRVGAPTTKTMHDKGLTTTIDWKDK 97
Query: 79 PTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRAN 131
G S S L K Q R D RNL A I M+ L
Sbjct: 98 DAYGRSISAKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALV---------- 147
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
IY++ ++ +RGR+ E + A LY ACR+E PR+++E V+ +KEIGR +I
Sbjct: 148 -IYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEISDVSR-VERKEIGRTYRYI 205
Query: 192 VKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQ 236
+ L +EM + Y+ RF S L ++ + A E ++
Sbjct: 206 SQEL------GLEMRPVDPKKYVPRFSSELDLSEEVQSKANEIIE 244
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,114,112,286
Number of Sequences: 23463169
Number of extensions: 160012426
Number of successful extensions: 436911
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1555
Number of HSP's successfully gapped in prelim test: 291
Number of HSP's that attempted gapping in prelim test: 431491
Number of HSP's gapped (non-prelim): 2888
length of query: 278
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 138
effective length of database: 9,074,351,707
effective search space: 1252260535566
effective search space used: 1252260535566
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.9 bits)