BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023713
(278 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W0W3|TF2B_ORYSJ Transcription initiation factor IIB OS=Oryza sativa subsp. japonica
GN=TFIIB PE=1 SV=1
Length = 312
Score = 405 bits (1041), Expect = e-112, Method: Compositional matrix adjust.
Identities = 194/261 (74%), Positives = 222/261 (85%), Gaps = 1/261 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+DS+C DCK+ TEV FDHSAGDT+C+ECGLVLEA+SVDETSEWR FANESSD+DPVRVG
Sbjct: 1 MSDSFCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESSDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP G E LS SLG+ Q R S+PDR+LI AF++I+ M+DRL
Sbjct: 61 GPTNPLLTDGGLSTVIAKPN-GAQGEFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYKKVED K +RGRNQ+AI+AACLYIACRQE++PRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
KKEIGRAKEFIVK LE EMGQS+EMGTIHA D+LRRFCS LGM NQAVKAAQEAVQ+SE+
Sbjct: 180 KKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNQAVKAAQEAVQRSEE 239
Query: 241 LDIRLILVFFSLFLVETHIQL 261
LDIR + + ++ QL
Sbjct: 240 LDIRRSPISIAAAVIYMITQL 260
>sp|P48513|TF2B_SOYBN Transcription initiation factor IIB OS=Glycine max GN=TFIIB1 PE=2
SV=1
Length = 313
Score = 402 bits (1033), Expect = e-111, Method: Compositional matrix adjust.
Identities = 191/261 (73%), Positives = 219/261 (83%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+D++C+DCKR TEVVFDHSAGDT+CSECGLVLE++S+DETSEWR FANES D+DP RVG
Sbjct: 1 MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPNRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP GG E LS SLG+ Q R S+PDR LIQAFK+I+ MSDRL
Sbjct: 61 GPSNPLLTDGGLSTVIAKPNGGGGGEFLSSSLGRWQNRGSNPDRALIQAFKTIATMSDRL 120
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYK+VEDQK RGRNQ+A++AACLYIACRQE+KPRTVKE CSVANG T
Sbjct: 121 GLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 180
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
KKEIGRAKE+IVK L E G +VEMGTIHA D++RRFCSNL M NQAVKAAQEAVQKSE+
Sbjct: 181 KKEIGRAKEYIVKQLGLENGNAVEMGTIHAGDFMRRFCSNLCMNNQAVKAAQEAVQKSEE 240
Query: 241 LDIRLILVFFSLFLVETHIQL 261
DIR + + ++ QL
Sbjct: 241 FDIRRSPISIAAAVIYIITQL 261
>sp|Q9SS44|TF2B2_ARATH Transcription initiation factor IIB-2 OS=Arabidopsis thaliana
GN=TFIIB2 PE=2 SV=1
Length = 312
Score = 396 bits (1017), Expect = e-110, Method: Compositional matrix adjust.
Identities = 186/244 (76%), Positives = 214/244 (87%), Gaps = 1/244 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+D++C+DCKR TEVVFDHSAGDT+CSECGLVLE++S+DETSEWR FANES D+DPVRVG
Sbjct: 1 MSDAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGL+TVI+KP G S + LS SLG+ Q R S+PDR LI AFK+I+ M+DRL
Sbjct: 61 GPTNPLLADGGLTTVISKPN-GSSGDFLSSSLGRWQNRGSNPDRGLIVAFKTIATMADRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYK+VEDQK RGRNQ+A++AACLYIACRQE+KPRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
KKEIGRAKE+IVK L E GQ VEMGTIHA D++RRFCSNLGMTNQ VKAAQE+VQKSE+
Sbjct: 180 KKEIGRAKEYIVKQLGLETGQLVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQESVQKSEE 239
Query: 241 LDIR 244
DIR
Sbjct: 240 FDIR 243
>sp|P48512|TF2B1_ARATH Transcription initiation factor IIB-1 OS=Arabidopsis thaliana
GN=TFIIB1 PE=1 SV=1
Length = 312
Score = 373 bits (957), Expect = e-102, Method: Compositional matrix adjust.
Identities = 176/261 (67%), Positives = 214/261 (81%), Gaps = 1/261 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+D+YC DCK+ TE+V DHSAGDT+CSECGLVLE++S+DETSEWR FANESS+ DP RVG
Sbjct: 1 MSDAYCTDCKKETELVVDHSAGDTLCSECGLVLESHSIDETSEWRTFANESSNSDPNRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ L+TVIAKP G S + LS SLG+ Q R+S+ DR LIQAFK+I+ MS+RL
Sbjct: 61 GPTNPLLADSALTTVIAKPN-GSSGDFLSSSLGRWQNRNSNSDRGLIQAFKTIATMSERL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANE+YK++EDQK RGRNQ+A+ AACLYIACRQE+KPRT+KE C +ANG T
Sbjct: 120 GLVATIKDRANELYKRLEDQKSSRGRNQDALYAACLYIACRQEDKPRTIKEICVIANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
KKEIGRAK++IVK L E GQSV++GTIHA D++RRFCSNL M+N AVKAAQEAVQKSE+
Sbjct: 180 KKEIGRAKDYIVKTLGLEPGQSVDLGTIHAGDFMRRFCSNLAMSNHAVKAAQEAVQKSEE 239
Query: 241 LDIRLILVFFSLFLVETHIQL 261
DIR + + ++ QL
Sbjct: 240 FDIRRSPISIAAVVIYIITQL 260
>sp|P29052|TF2B_DROME Transcription initiation factor IIB OS=Drosophila melanogaster
GN=TfIIB PE=2 SV=1
Length = 315
Score = 207 bits (526), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 110/231 (47%), Positives = 149/231 (64%), Gaps = 7/231 (3%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
+ ++ D+ AGD ICSECGLV+ +D SEWR F+NE S DP RVGGP NPLLSGG L
Sbjct: 20 SPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDL 79
Query: 73 STVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
ST+I T S + + + S DR+LI AFK IS+M+DR+ L TI DRAN
Sbjct: 80 STIIGPGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINLPKTIVDRANN 139
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K+V D K L+GR+ +A +ACLYIACRQE PRT KE C+V+ +KKEIGR + +
Sbjct: 140 LFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLTL 198
Query: 193 KHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
K LE SV++ I +D++ RFC+NL + N +AA +K+ ++DI
Sbjct: 199 KALET----SVDL--ITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDI 243
>sp|P29054|TF2B_XENLA Transcription initiation factor IIB OS=Xenopus laevis GN=gtf2b PE=2
SV=1
Length = 316
Score = 202 bits (515), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 107/229 (46%), Positives = 144/229 (62%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD ICSECGLV+ +D SEWR F+N+ + DP RVG NPLLSGG L+T
Sbjct: 23 LVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKAAADPSRVGDAQNPLLSGGDLTT 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ MSDR+ L I DR N ++
Sbjct: 83 MIGKGTGSASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITNMSDRINLPRNIIDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE + I D++ RFCSNLG+T Q AA +K+ +LD+
Sbjct: 202 LE------TNVDLITTGDFMSRFCSNLGLTKQVQMAATHIARKAVELDL 244
Score = 31.6 bits (70), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%)
Query: 94 KLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVA 153
KL ++ + +LI +S LGL ++ A I +K + + GR+ ++ A
Sbjct: 196 KLILKALETNVDLITTGDFMSRFCSNLGLTKQVQMAATHIARKAVELDLVPGRSPISVAA 255
Query: 154 ACLYIACRQENKPRTVKEFCSVA 176
A +Y+A + + RT KE +A
Sbjct: 256 AAIYMASQASAEKRTQKEIGDIA 278
>sp|Q5R886|TF2B_PONAB Transcription initiation factor IIB OS=Pongo abelii GN=GTF2B PE=2
SV=1
Length = 316
Score = 194 bits (492), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 142/229 (62%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNL + Q AA +K+ +LD+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>sp|Q4R3J5|TF2B_MACFA Transcription initiation factor IIB OS=Macaca fascicularis GN=GTF2B
PE=2 SV=1
Length = 316
Score = 194 bits (492), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 142/229 (62%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNL + Q AA +K+ +LD+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>sp|Q00403|TF2B_HUMAN Transcription initiation factor IIB OS=Homo sapiens GN=GTF2B PE=1
SV=1
Length = 316
Score = 194 bits (492), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 142/229 (62%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNL + Q AA +K+ +LD+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>sp|P62916|TF2B_RAT Transcription initiation factor IIB OS=Rattus norvegicus GN=Gtf2b
PE=2 SV=1
Length = 316
Score = 194 bits (492), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 142/229 (62%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNL + Q AA +K+ +LD+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>sp|P62915|TF2B_MOUSE Transcription initiation factor IIB OS=Mus musculus GN=Gtf2b PE=1
SV=1
Length = 316
Score = 194 bits (492), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 142/229 (62%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNL + Q AA +K+ +LD+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>sp|Q2KIN8|TF2B_BOVIN Transcription initiation factor IIB OS=Bos taurus GN=GTF2B PE=2
SV=1
Length = 316
Score = 194 bits (492), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 142/229 (62%), Gaps = 7/229 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE SV++ I D++ RFCSNL + Q AA +K+ +LD+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>sp|O16991|TF2B_CAEEL Transcription initiation factor IIB OS=Caenorhabditis elegans
GN=ttb-1 PE=3 SV=2
Length = 306
Score = 185 bits (469), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 102/230 (44%), Positives = 139/230 (60%), Gaps = 11/230 (4%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ DH AGD +C CGLV+ VD +EWR F+NE S +DP RVG P NPLLSGG LST
Sbjct: 15 LIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPLLSGGDLST 74
Query: 75 VIAKPTAGGSTELLSGSLGKLQARS-SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEI 133
IA G ++ SL Q +S ++ DR + A I MS+R+ L I+D A+ I
Sbjct: 75 TIAVGFGGSDSD---NSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNIQDSASRI 131
Query: 134 YKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
+K V + K LRG+N EA AACLYIACR++ PRT KE C+V+ +KKEIGR + IV+
Sbjct: 132 FKDVLESKALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSR-VSKKEIGRCFKIIVR 190
Query: 194 HLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
LE + Q I ++D++ RFC NL + N AA + + D+D+
Sbjct: 191 SLETNLEQ------ITSADFMSRFCGNLSLPNSIQAAATRIAKCAVDMDL 234
>sp|Q54FD6|TF2B_DICDI Transcription initiation factor IIB OS=Dictyostelium discoideum
GN=gtf2b PE=3 SV=1
Length = 325
Score = 176 bits (447), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 148/243 (60%), Gaps = 15/243 (6%)
Query: 5 YCADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFAN-ESSDHDPVRVGGP 62
+C C+ + +++ D++ GD IC CG+V+ VDE SEWR F+N ES+ DP RVGGP
Sbjct: 22 WCMVCRIQDPDIIEDYAKGDLICRGCGVVVGDRIVDEHSEWRTFSNSESTGADPNRVGGP 81
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSS--HPDRNLIQAFKSISAMSDRL 120
+NPLL LST + K GS + SG+L +LQ +S+ DRNL+ AFK I M+D +
Sbjct: 82 INPLLRDSALSTTVGK----GSKD--SGTLTRLQNKSALGTGDRNLLAAFKEIGRMADHM 135
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
L T++DRANE+++ ++D+K +GR+ + +VAA LYIACRQE+ RT KE ++ N
Sbjct: 136 NLPQTVQDRANELFRFMDDKKSTKGRSVDGMVAAALYIACRQEHLSRTFKEIAALTN-VP 194
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
KKEI R K ++ + + TI + D+ RFCS L + N K A+ + + D
Sbjct: 195 KKEISRC----YKIMKETFASVLNLQTISSEDFTSRFCSTLKLPNDVKKGAEHVSKMAMD 250
Query: 241 LDI 243
+ I
Sbjct: 251 MGI 253
>sp|Q9NHP7|TF2B_DROVI Transcription initiation factor IIB OS=Drosophila virilis GN=TfIIB
PE=3 SV=1
Length = 293
Score = 165 bits (418), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 100/234 (42%), Positives = 138/234 (58%), Gaps = 35/234 (14%)
Query: 13 TEVVFDHSAGDTICSECGLVL-EAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGG 71
+ ++ D+ AGD ICSECGLV+ +A+ GGP NPLLSGG
Sbjct: 20 SPLIEDYRAGDMICSECGLVVGDAF-----------------------GGPENPLLSGGH 56
Query: 72 LSTVIAKPTAGGSTELLSGS--LGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDR 129
LST+I T S + + RSS DR+LI AFK IS+M+DR+ L TI DR
Sbjct: 57 LSTIIGPGTGSASFDAFGAPKYPNRRTMRSS--DRSLISAFKEISSMADRINLPKTIVDR 114
Query: 130 ANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKE 189
AN ++K+V D K L+GR+ +A +ACLYIACRQE PRT KE C+V+ +KKEIGR +
Sbjct: 115 ANTLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFK 173
Query: 190 FIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
+K LE SV++ I +D++ RFC+NL + N +AA +K+ ++DI
Sbjct: 174 LTLKALET----SVDL--ITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDI 221
>sp|Q8SRP3|TF2B_ENCCU Transcription initiation factor IIB OS=Encephalitozoon cuniculi
(strain GB-M1) GN=ECU06_1100i PE=3 SV=1
Length = 312
Score = 157 bits (397), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 132/238 (55%), Gaps = 16/238 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C+DC +V D+ G +C CG ++ +DE SEWR F +S+ DP R+G NP
Sbjct: 14 CSDCGETQNIVEDYKNGYHVCGRCGCIVGNRIIDEGSEWRSFG-DSNKVDPCRIGSASNP 72
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSH--PDRNLIQAFKSISAMSDRLGLV 123
L L T+I+ T GG + S L K+Q ++S P+R L I+A +R L
Sbjct: 73 YLESEQLDTMIS--TGGG---MNSYVLSKIQMKNSMRGPERALKHGMNLITAFCERSNLS 127
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI DRA+ I+K +E++K L+G+N E IVAAC+YIACRQE PRT KE SV K+E
Sbjct: 128 RTIIDRAHYIFKNIEERKLLKGKNVEGIVAACIYIACRQEECPRTFKEI-SVMTAVQKRE 186
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDL 241
IGR + I HLE M T+ + + RFCS+L + + K A E + + +L
Sbjct: 187 IGRCFKLISPHLE-------RMATMSTENIIARFCSDLNLNIKIQKIATEIAKAAHEL 237
>sp|O13749|TF2B_SCHPO Transcription initiation factor IIB OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sua7 PE=3 SV=1
Length = 340
Score = 155 bits (391), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 92/248 (37%), Positives = 137/248 (55%), Gaps = 22/248 (8%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFAN-ESSDHDPVRVGGPL 63
C++C+ +V + S+GDT+C CGLVL +D SEWR F+N + + DP RVG
Sbjct: 20 CSECREDPPNLVEEFSSGDTVCGSCGLVLGDRIIDTRSEWRTFSNSDEASGDPSRVGKVA 79
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSH--PDRNLIQAFKSISAMSDRLG 121
NPLL+G L T I+ G+ L K Q RS ++NL+ A+K I AM D +
Sbjct: 80 NPLLNGSQLDTTISSYDGAGAM------LAKAQGRSVQVRGEKNLLTAYKEIGAMCDAIS 133
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L I D A ++YK+V+D K L+G++ ++I+AAC+YIACRQ PRT E C++ N K
Sbjct: 134 LPKVIADTAKQLYKRVDDHKALKGKSSQSIIAACIYIACRQGKVPRTFMEICTLTN-VPK 192
Query: 182 KEIGRAKEFIVKHL----------EAEMGQS-VEMGTIHASDYLRRFCSNLGMTNQAVKA 230
KEIGR + + + L +A G ++ + A D + RFC+ L + A
Sbjct: 193 KEIGRVYKTLQRMLTEGGALHNSVDALKGHEYIQSSSTSAEDLMVRFCNRLMLPMSVQSA 252
Query: 231 AQEAVQKS 238
A E +++
Sbjct: 253 AAELARRA 260
>sp|Q05959|TF2B_KLULA Transcription initiation factor IIB OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=SUA7 PE=3 SV=1
Length = 357
Score = 133 bits (335), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/252 (35%), Positives = 137/252 (54%), Gaps = 19/252 (7%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK +VV S GD +C+ CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 28 CPECKVYPPKVVERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGDDPSRVGEAS 87
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL G L+T I + A GS ++ L + Q++S D L A+ I+ M D
Sbjct: 88 NPLLDGNHLTTRIGQ--AQGSDARVTRDLNRAQSKSIVDKKDNELQAAYAKITMMCDAAE 145
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +KD A E YK +++ L+G++QE+I+A+ + + CR+ R+ KE S+ N K
Sbjct: 146 LPKIVKDCAKEAYKLCFEERVLKGKSQESIMASVILVGCRRAEVGRSFKEILSLTN-VRK 204
Query: 182 KEIGRAKEF-IVKHLEAEMGQ---------SVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
KEIG K F I+K++ E ++ G A ++ RFCS+LG++ Q AA
Sbjct: 205 KEIG--KTFTIIKNILREKNDRGFANIDTSNITTGQTSAETFIPRFCSHLGLSVQVANAA 262
Query: 232 QEAVQKSEDLDI 243
+ + S+D+++
Sbjct: 263 EYIAKHSKDVNV 274
>sp|O28970|TF2B_ARCFU Transcription initiation factor IIB OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=tfb PE=3 SV=1
Length = 326
Score = 132 bits (332), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 133/248 (53%), Gaps = 19/248 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D+ G+ IC +CGLV+E +D EWR F +E D RVG P+
Sbjct: 30 CPECGS-PRLIRDYRRGEFICQDCGLVIEDTYIDAGPEWRAFDSEQRDKRS-RVGAPVTY 87
Query: 66 LLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSISA 115
+ GLST+I K G + + + + L K Q R S+ +RNL A +
Sbjct: 88 TIHDKGLSTIIDWSNKDYYGKAISVRNRAQLFRLRKWQRRIRISNATERNLAFALSELDR 147
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL ++++ A IY+K ++ +RGR+ E +VAA LY ACRQ PRT+ E +
Sbjct: 148 MASALGLPKSVRETAAVIYRKAVEKNLIRGRSIEGVVAAALYAACRQAGVPRTLDEIATY 207
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR FI + L +++ +DY+ RFC+ LG++ + K A E +
Sbjct: 208 SR-VDRKEIGRTYRFITREL------GLKLMPTSPADYIPRFCAALGLSGEVQKKAIEII 260
Query: 236 QKSEDLDI 243
+K+E+ ++
Sbjct: 261 KKAEEREL 268
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%)
Query: 120 LGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179
LGL ++ +A EI KK E+++ GR + AA LY+A + RT +E VA T
Sbjct: 246 LGLSGEVQKKAIEIIKKAEERELTSGRGPTGVAAAALYVASILLGERRTQREVAEVAGVT 305
Query: 180 TKKEIGRAKEFIVK 193
R KE K
Sbjct: 306 EVTIRNRYKELAEK 319
>sp|A5UKA1|TF2B_METS3 Transcription initiation factor IIB OS=Methanobrevibacter smithii
(strain PS / ATCC 35061 / DSM 861) GN=tfb PE=3 SV=1
Length = 310
Score = 127 bits (319), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 129/245 (52%), Gaps = 19/245 (7%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
+ C +C TE++ D+ + +C+ CGLV++ VD EWR F +E D RVG P+
Sbjct: 12 TVCPECGS-TELIGDYERAEVVCAHCGLVIDENLVDMGPEWRAFDHEQRDKR-TRVGAPI 69
Query: 64 NPLLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSI 113
+ GLST+I K G + + L K Q + S +RNL A +
Sbjct: 70 TYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSEL 129
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
S RLGL ++++ A+ +Y+ D K +RGR+ E +VAA LY ACR+ N PRT+ E
Sbjct: 130 DRDSSRLGLPRSVREAASVVYRSAVDNKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIA 189
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
V+ TKKE+GR F+ + L ++++ DY+ RF S LG++ +A A E
Sbjct: 190 EVSR-VTKKEVGRTYRFLTREL------NIKLPPTSPVDYVPRFASELGLSGEAQSRAIE 242
Query: 234 AVQKS 238
++K+
Sbjct: 243 IIEKA 247
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
+ + LGL + RA EI +K ++ GR + AA LYIA + +T ++
Sbjct: 223 VPRFASELGLSGEAQSRAIEIIEKAMEKGLTSGRGPTGVAAAALYIASVLLGERKTQRDV 282
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMG 206
+A T E +++ E+ + +EMG
Sbjct: 283 ADIAGVT---------EVTIRNRYKELTEQLEMG 307
>sp|P29055|TF2B_YEAST Transcription initiation factor IIB OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SUA7 PE=1 SV=1
Length = 345
Score = 125 bits (314), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 140/276 (50%), Gaps = 28/276 (10%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH---DPVRVGG 61
C +CK ++V S GD +C+ CGLVL VD SEWR F+N+ DH DP RVG
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSND--DHNGDDPSRVGE 81
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTEL-LSGSLGKLQARS--SHPDRNLIQAFKSISAMSD 118
NPLL G LST I K G +T++ + L K Q ++ D + AF I+ + D
Sbjct: 82 ASNPLLDGNNLSTRIGK---GETTDMRFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCD 138
Query: 119 RLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG 178
L +KD A E YK D+K L+G++ E+I+AA + I CR+ RT KE S+ +
Sbjct: 139 AAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHV 198
Query: 179 TTKKEIGRAKEFIVKHL--EAEMG----QSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
T KE G+ + L ++E G + M Y+ RFCS+LG+ Q +A+
Sbjct: 199 KT-KEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAE 257
Query: 233 EAVQKSEDLD---------IRLILVFFSLFLVETHI 259
+K +++ I ++ ++ ++ L + I
Sbjct: 258 YTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPI 293
>sp|Q9HJM7|TF2B1_THEAC Transcription initiation factor IIB 1 OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=tfbA PE=3 SV=1
Length = 312
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 126/245 (51%), Gaps = 19/245 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T ++ D+ G+ +C ECG V+E +D+ EWR F +E ++ R G P+
Sbjct: 16 CPECGS-TNLIRDYEHGELVCGECGAVIEDAYIDQGPEWRAFDSEQNESR-ARAGSPMTY 73
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSISA 115
+ GLST I+ K + G S + + L K Q R S+ +RNL QA + +
Sbjct: 74 TIHDKGLSTDISWKNKDSYGRSIPTRNRAQLYRLRKWQKRIKVSNAAERNLSQALQELER 133
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ L + +K+ A IY+K Q +RGR+ E +VA LY ACR N PRT+ E SV
Sbjct: 134 MASNLSIPDDVKETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRITNVPRTLGEIASV 193
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
KKEIGR + ++L+ + S A DY+ RFCS L ++ A E +
Sbjct: 194 TR-VKKKEIGRTYRIMSRYLKLNIMPS------KAEDYISRFCSKLKLSMDTRNKALEIL 246
Query: 236 QKSED 240
+ +E+
Sbjct: 247 RSAEN 251
>sp|Q979Q3|TF2B1_THEVO Transcription initiation factor IIB 1 OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=tfbA PE=3 SV=1
Length = 312
Score = 122 bits (305), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 128/248 (51%), Gaps = 19/248 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T ++ D+ G+ +C ECG V+E +D+ EWR F +E ++ R G P+
Sbjct: 16 CPECGS-TNLIRDYEHGELVCGECGAVIEDSYIDQGPEWRAFDSEQNESR-ARAGSPMTF 73
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSISA 115
+ GLST I+ K + G S + + L K Q R S+ +RNL QA + +
Sbjct: 74 TIHDKGLSTDISWKNKDSYGRSIPTRNRAQLYRLRKWQKRIKVSNAAERNLSQALQELER 133
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ L + +++ A IY+K Q +RGR+ E +VA LY ACR N PRT+ E SV
Sbjct: 134 MAFNLSIPNDVRETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRITNVPRTLGEIASV 193
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
KKEIGR + ++L+ + S A DY+ RFCS L ++ A E +
Sbjct: 194 TR-VKKKEIGRTYRIMSRYLKLNIMPS------KAEDYISRFCSKLKLSMDTRNKALEIL 246
Query: 236 QKSEDLDI 243
+ +E++ +
Sbjct: 247 RDAENVGL 254
>sp|Q975S1|TF2B_SULTO Transcription initiation factor IIB OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=tfb PE=3
SV=1
Length = 308
Score = 120 bits (300), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 124/237 (52%), Gaps = 18/237 (7%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
++VFD G+ IC+E G V+E ++D+ EWR F E + RVGGPLN + G+S
Sbjct: 18 KIVFDEERGEYICTETGEVIEERAIDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDMGIS 76
Query: 74 TVI--AKPTAGGST-------ELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLV 123
TVI A G T E+L +++AR S DRNL QA + + + L L
Sbjct: 77 TVIDWKDKDAMGRTLDPKRRLEVLRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLP 136
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+KD A IY+K ++ +RGR+ E++VAA +Y ACR+ RT+ E +KE
Sbjct: 137 KAVKDEAALIYRKAVEKGLVRGRSIESVVAASIYAACRRMKMARTLDEIAQFTKA-NRKE 195
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
+ R I++ L+ + + DY+ R S LG++ +K A + ++K+++
Sbjct: 196 VARCYRLILRELD------INVPVSDPKDYVTRIGSLLGLSGSTMKMAIDIIEKAKE 246
>sp|P50387|TF2B_SULSH Transcription initiation factor IIB OS=Sulfolobus shibatae GN=tfb
PE=3 SV=1
Length = 309
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 122/236 (51%), Gaps = 18/236 (7%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
+++FD G+ ICSE G VLE +D+ EWR F E + RVGGPLN + GLS
Sbjct: 19 KIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKEKRS-RVGGPLNNTIHDRGLS 77
Query: 74 TVI--AKPTAGGST-------ELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLV 123
T+I A G T E L +++AR S DRNL QA + + + L L
Sbjct: 78 TLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLP 137
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
++KD A IY+K ++ +RGR+ E++VAA +Y ACR+ RT+ E +KE
Sbjct: 138 KSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLDEIAQYTKA-NRKE 196
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSE 239
+ R +++ L+ V + DY+ R + LG++ + +K A E + K++
Sbjct: 197 VARCYRLLLRELD------VSVPVSDPKDYVTRIANLLGLSGRVMKTAAEIIDKAK 246
Score = 31.6 bits (70), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%)
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
++ +++ LGL + A EI K + G++ + AA +YIA ++ RT KE
Sbjct: 221 VTRIANLLGLSGRVMKTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEI 280
Query: 173 CSVANGTTKKEIGRAKEF 190
VA T R KE
Sbjct: 281 AQVAGVTEVTVRNRYKEL 298
>sp|Q5JGN1|TF2B1_PYRKO Transcription initiation factor IIB 1 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=tfb1 PE=3
SV=1
Length = 300
Score = 119 bits (297), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 120/231 (51%), Gaps = 12/231 (5%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
TE ++D S G+ +C CG V+E VDE EWR F + RVG P + LL GL
Sbjct: 13 TEFIYDPSRGEIVCKVCGYVIEENVVDEGPEWRAF-DPGQREKRARVGAPESILLHDKGL 71
Query: 73 STVIA--KPTAGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
ST I + G E + L K Q+R S +RNL A + ++ L L ++
Sbjct: 72 STDIGIDRSLTGLMREKMY-RLRKWQSRLRVSDAAERNLAFALSELDRLASNLSLPKHVE 130
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
+ A +Y++ + +RGR+ EA++AAC+Y ACR PRT+ E V+ KKEIGR+
Sbjct: 131 EEAARLYREAVRKGLIRGRSIEAVIAACVYAACRLLKVPRTLDEIADVSR-VDKKEIGRS 189
Query: 188 KEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKS 238
FI +HL + + +DY+ +F LG++ + + A E ++++
Sbjct: 190 FRFIARHLNLTPKKLF----VKPTDYVNKFADELGLSEKVRRRAIEILEEA 236
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LGL ++ RA EI ++ + G++ +VAA LYIA
Sbjct: 201 PKKLFVKPTDYVNKFADELGLSEKVRRRAIEILEEAYQRGLTSGKSPAGLVAAALYIASL 260
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E + RT +E VA T R KE + K
Sbjct: 261 MEGEKRTQREVAEVARVTEVTVRNRYKELVEK 292
>sp|Q9HHK5|TF2B3_HALSA Transcription initiation factor IIB 3 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbC PE=3
SV=1
Length = 317
Score = 118 bits (296), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 120/243 (49%), Gaps = 21/243 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C V+ D S + +C +CGLVLE +D EWR F N S RVG P
Sbjct: 25 CPECNSAN-VITDQS--ERVCEDCGLVLEDDQIDHGPEWRAF-NSSERDQKSRVGAPTTK 80
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLS----GSLGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S + L K Q R D RNL A I
Sbjct: 81 TMHDKGLTTQIDWKDKDAYGRSLDAKKRNQMNRLRKWQERIRTKDAGERNLQFALSEIDR 140
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + ACLY ACRQE PRT++E V
Sbjct: 141 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATACLYAACRQEGIPRTLEEVTEV 200
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
A +KEIGR ++ + L S+E+ +YL RF S+L ++ + + A+E +
Sbjct: 201 AR-IDQKEIGRTYRYVAQEL------SLEIQPTDPKEYLPRFASDLELSEEVIAKAREII 253
Query: 236 QKS 238
S
Sbjct: 254 DTS 256
>sp|P58111|TF2B1_SULSO Transcription initiation factor IIB 1 OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=tfbA
PE=3 SV=1
Length = 309
Score = 118 bits (296), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 121/236 (51%), Gaps = 18/236 (7%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
+++FD G+ ICSE G VLE +D+ EWR F E + RVGGPLN + GLS
Sbjct: 19 KIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKEKRS-RVGGPLNNTIHDRGLS 77
Query: 74 TVI--AKPTAGGST-------ELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLV 123
T+I A G T E L +++AR S DRNL QA + + + L L
Sbjct: 78 TLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLP 137
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
++KD A IY+K ++ +RGR+ E++VAA +Y ACR+ RT+ E +KE
Sbjct: 138 KSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLDEIAQYTKA-NRKE 196
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSE 239
+ R +++ L+ V + DY+ R + LG++ +K A E + K++
Sbjct: 197 VARCYRLLLRELD------VSVPVSDPKDYVTRIANLLGLSGAVMKTAAEIIDKAK 246
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%)
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
++ +++ LGL + A EI K + G++ + AA +YIA ++ RT KE
Sbjct: 221 VTRIANLLGLSGAVMKTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEI 280
Query: 173 CSVANGTTKKEIGRAKEF 190
VA T R KE
Sbjct: 281 AQVAGVTEVTVRNRYKEL 298
>sp|Q2NEL6|TF2B_METST Transcription initiation factor IIB OS=Methanosphaera stadtmanae
(strain DSM 3091) GN=tfb PE=3 SV=1
Length = 311
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 124/248 (50%), Gaps = 19/248 (7%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
++ C +C T+++ DH G+ +C CGLV++ VD EWR F +E D RVG P
Sbjct: 12 ETKCPECGS-TKLINDHERGEVVCGACGLVIDDNIVDMGPEWRAFDHEQRDKR-TRVGAP 69
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKS 112
+ + GLST+I K G + + L K Q + S +RNL A
Sbjct: 70 ITYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSE 129
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
+ S RLGL ++++ A+ +Y+ + K +RGR+ E +VAA LY ACR+ PRT+ E
Sbjct: 130 LDRDSSRLGLPRSVRESASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCKVPRTLDEI 189
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ +KKE+GR F+ + L + + DY+ RF S L ++ A
Sbjct: 190 ADVSR-VSKKEVGRTYRFLTRELH------IRLPPTSPIDYVPRFASELNLSGVVQSKAI 242
Query: 233 EAVQKSED 240
E + ++ D
Sbjct: 243 EIINQAMD 250
>sp|Q9UWN6|TF2B_SULAC Transcription initiation factor IIB OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=tfb PE=3 SV=2
Length = 307
Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 122/237 (51%), Gaps = 18/237 (7%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
+++FD G+ IC+E G V+E +D+ EWR F E + RVGGPLN + G+S
Sbjct: 17 KIIFDEERGEYICTETGEVIEERIIDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDMGIS 75
Query: 74 TVIA---KPTAGGST------ELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLV 123
TVI K G S E+L +++ R S DRNL QA + + + L L
Sbjct: 76 TVIDWKDKDAMGRSLDPKRRLEVLRWRKWQIRTRIQSSIDRNLAQAMNELERIGNLLNLP 135
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+KD A IY+K ++ +RGR+ E++VAA +Y ACR+ RT+ E +KE
Sbjct: 136 KAVKDEAALIYRKAVEKGLVRGRSIESVVAASIYAACRRMKMARTLDEIAQFTKA-NRKE 194
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
+ R I++ L+ +E+ DY+ R + L ++ +K A E ++K+++
Sbjct: 195 VARCYRLILRELD------IEVPVSDPKDYVTRIGTLLSLSGITMKHAAEIIEKAKN 245
>sp|O26971|TF2B_METTH Transcription initiation factor IIB OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=tfb PE=3 SV=1
Length = 310
Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 126/244 (51%), Gaps = 19/244 (7%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
++ C +C ++ D+ + +C +CGLV++ VD EWR F +E D RVG P
Sbjct: 11 ETKCPECGS-DDLRGDYERAEIVCGKCGLVIDDNLVDMGPEWRAFDHEQRDKR-TRVGAP 68
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKS 112
+ + GLST+I K G + + L K Q + S +RNL A
Sbjct: 69 ITYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSE 128
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
+ S RLGL ++++ A+ +Y++ + K +RGR+ E +VAA LY ACR+ N PRT+ E
Sbjct: 129 LDRDSSRLGLPRSVREAASMVYRRAVENKLIRGRSIEGVVAASLYAACRKCNVPRTLDEI 188
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ +KKE+GR F+ + L ++++ DY+ RF S LG++ + A
Sbjct: 189 AEVSR-VSKKEVGRTYRFLTREL------NIKLPPTSPVDYVPRFASELGLSGEVQSKAI 241
Query: 233 EAVQ 236
E ++
Sbjct: 242 EIIE 245
>sp|Q9HSB3|TF2B6_HALSA Transcription initiation factor IIB 6 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbF PE=3
SV=1
Length = 319
Score = 115 bits (287), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 125/248 (50%), Gaps = 26/248 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C L VV D G+++C++CGLV+E +D EWR F ++ D + RVG P
Sbjct: 25 CPECGGL--VVNDEEHGESVCADCGLVVEEDGIDRGPEWRAFDSKEKD-EKSRVGAPTTN 81
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
+ GLST I K G S L S K+Q R + +RNL QA
Sbjct: 82 TMHDKGLSTNIDWRDKDAYGNS--LSSNQRQKMQRLRKWNERFRTRDAK-ERNLKQALGE 138
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ + L GR+ E + +C+Y A RQ PR++ E
Sbjct: 139 IDRMASALGLPDNVRETASVIYRRALEDDLLPGRSIEGVATSCVYAAARQAGVPRSLDEI 198
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ K EI R ++V+ L +E+ Y+ RF S+LG++++A A+
Sbjct: 199 ADVSR-VEKAEIARTYRYVVREL------GLEVAPADPESYVPRFASDLGLSDEASHRAR 251
Query: 233 EAVQKSED 240
E ++ ++D
Sbjct: 252 ELLKTAKD 259
>sp|Q9HR45|TF2B4_HALSA Transcription initiation factor IIB 4 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbD PE=3
SV=1
Length = 328
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 111/232 (47%), Gaps = 20/232 (8%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D C +C ++V D G+T C ECGLV+E +D EWR F + D + RVG P
Sbjct: 29 DHGCPECN--GDLVTDEDRGETTCGECGLVVEEDGIDHGPEWRAFNAQEQD-EKSRVGAP 85
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKS 112
++ GLST I LSG + R + +RNL QA
Sbjct: 86 TTNMMHDKGLSTNIGWQDKDAYGNTLSGRQRRKMQRLRKWNERFRTRNSKERNLKQALGE 145
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ GL ++++ A+ IY++ + L GR+ E + + LY A RQ N PR++ E
Sbjct: 146 IERMASAFGLPDSVRETASVIYRRALGEDLLPGRSIEGVATSALYAAARQANTPRSLDEV 205
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMT 224
SV+ + EI R ++ + L S+E+ + Y+ RFCS+L ++
Sbjct: 206 ASVSR-VDRGEIARTYRYVAREL------SLEVAPTDPASYVPRFCSDLELS 250
>sp|Q8TX21|TF2B_METKA Transcription initiation factor IIB OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=tfb
PE=3 SV=1
Length = 307
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 116/235 (49%), Gaps = 12/235 (5%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
E+VFD G+ +C+ CGLV E +D EWR F N R G P+ L G+S
Sbjct: 22 EIVFDEERGEYVCANCGLVTEDPVIDPGPEWRHF-NPDQRQRRSRTGEPVKLRLPDKGIS 80
Query: 74 TVIAKP--TAGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKD 128
T+I + +GG + AR S +RN QAF + ++ +L L ++++
Sbjct: 81 TIIDRELRDSGGKKNPRMRRIRTWDARIKVSGSRERNFFQAFLELENLASKLQLPESVRE 140
Query: 129 RANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAK 188
A IY+K + +RGR E+++ A ++ AC++ PRT +E + + EI RA
Sbjct: 141 LAASIYRKAYKEGIVRGRGIESVLGAAVFAACKEARVPRTAREIAEALGVSDENEILRAY 200
Query: 189 EFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
+ + L +++ SD+L RF S LG++ AQE ++K+++ I
Sbjct: 201 RVLQRRL------NLKQKPTEPSDHLPRFASKLGVSENVQAKAQEIIEKAKEKGI 249
Score = 36.2 bits (82), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
+ + +LG+ ++ +A EI +K +++ G+ + AA LYIA E + RT KE
Sbjct: 220 LPRFASKLGVSENVQAKAQEIIEKAKEKGITVGKGPAGVAAAALYIASILEGERRTQKEI 279
Query: 173 CSVANGT 179
VA T
Sbjct: 280 AEVARVT 286
>sp|Q9V0V5|TF2B_PYRAB Transcription initiation factor IIB OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=tfb PE=3 SV=1
Length = 300
Score = 110 bits (276), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 120/231 (51%), Gaps = 12/231 (5%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
TE ++D G+ +C+ CG V+E VD EWR F + S R G P + LL GL
Sbjct: 13 TEFIYDPERGEIVCARCGYVIEENIVDMGPEWRAF-DASQREKRSRTGAPESILLHDKGL 71
Query: 73 STVIA--KPTAGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
ST I + G E + L K Q+R S +RNL A + ++ +L L ++
Sbjct: 72 STDIGIDRSLTGLMREKMY-RLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLPKHVE 130
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
+ A +Y++ + +RGR+ E+++AAC+Y ACR PRT+ E +A KKEIGR+
Sbjct: 131 EEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIAR-VEKKEIGRS 189
Query: 188 KEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKS 238
FI ++L + + +DY+ +F LG++ + + A E ++++
Sbjct: 190 YRFIARNLNLTPKKLF----VKPTDYVNKFADELGLSEKVRRRAIEILEEA 236
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LGL ++ RA EI ++ + G++ +VAA LYIA
Sbjct: 201 PKKLFVKPTDYVNKFADELGLSEKVRRRAIEILEEAYKRGLTSGKSPAGLVAAALYIASL 260
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E + RT +E VA T R KE + K
Sbjct: 261 LEGEKRTQREVAEVARVTEVTVRNRYKELVEK 292
>sp|O59151|TF2B_PYRHO Transcription initiation factor IIB OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=tfb PE=3 SV=1
Length = 300
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 120/231 (51%), Gaps = 12/231 (5%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
TE ++D G+ +C+ CG V+E +D EWR F + S R G P + LL GL
Sbjct: 13 TEFIYDPERGEIVCARCGYVIEENIIDMGPEWRAF-DASQREKRSRTGAPESILLHDKGL 71
Query: 73 STVIA--KPTAGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
ST I + G E + L K Q+R S +RNL A + ++ +L L ++
Sbjct: 72 STDIGIDRSLTGLMREKMY-RLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLPKHVE 130
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
+ A +Y++ + +RGR+ E+++AAC+Y ACR PRT+ E +A KKEIGR+
Sbjct: 131 EEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIAR-VEKKEIGRS 189
Query: 188 KEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKS 238
FI ++L + + +DY+ +F LG++ + + A E ++++
Sbjct: 190 YRFIARNLNLTPKKLF----VKPTDYVNKFADELGLSEKVRRRAIEILEEA 236
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LGL ++ RA EI ++ + G++ +VAA LYIA
Sbjct: 201 PKKLFVKPTDYVNKFADELGLSEKVRRRAIEILEEAYRRGLTSGKSPAGLVAAALYIASL 260
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E + RT +E VA T R KE + K
Sbjct: 261 LEGEKRTQREVAEVARVTEVTVRNRYKELVEK 292
>sp|P58109|TF2B2_PYRKO Transcription initiation factor IIB 2 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=tfb2 PE=3
SV=1
Length = 306
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 121/236 (51%), Gaps = 18/236 (7%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
TE ++D G+ +C++CG V+E VDE EWR F + R G P+ ++ GL
Sbjct: 16 TEFIYDPRRGEIVCAKCGYVIEENVVDEGPEWRAFEPGQREKR-ARTGAPMTLMIHDKGL 74
Query: 73 STVIA---KPTAGGS-TELLSGSLGKL---QAR---SSHPDRNLIQAFKSISAMSDRLGL 122
ST I K G T + L +L Q R + +RNL A + M+ +L L
Sbjct: 75 STDIDWRDKDIHGNQITGMYRNKLRRLRMWQRRMRINDAAERNLAFALSELDRMAAQLRL 134
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+K+ A +Y+K +K +RGR+ E +V+A LY ACR E PRT+ E SV+ +KK
Sbjct: 135 PRHLKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIASVSK-VSKK 193
Query: 183 EIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKS 238
EIGR+ F+ + G + + +Y+ RF LG++ + K A+E + ++
Sbjct: 194 EIGRSYRFMAR------GLGLNLRPTSPIEYVDRFGDALGVSARTKKRAKEILNEA 243
>sp|P61999|TF2B_PYRWO Transcription initiation factor IIB OS=Pyrococcus woesei GN=tfb
PE=1 SV=1
Length = 300
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 124/243 (51%), Gaps = 23/243 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C C+ E+++D G+ +C++CG V+E +D EWR F + S R G P +
Sbjct: 7 CPACES-AELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAF-DASQRERRSRTGAPESI 64
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSG-------SLGKLQAR---SSHPDRNLIQAFKSISA 115
LL GLST I G LSG L K Q+R S +RNL A +
Sbjct: 65 LLHDKGLSTEI------GIDRSLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDR 118
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
++ +L L +++ A +Y++ + +RGR+ E+++AAC+Y ACR PRT+ E +
Sbjct: 119 ITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADI 178
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
A KKEIGR+ FI ++L + + + +DY+ +F LG++ + + A E +
Sbjct: 179 AR-VDKKEIGRSYRFIARNL----NLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEIL 233
Query: 236 QKS 238
++
Sbjct: 234 DEA 236
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LGL ++ RA EI + + G++ +VAA LYIA
Sbjct: 201 PKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASL 260
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E + RT +E VA T R KE + K
Sbjct: 261 LEGEKRTQREVAEVARVTEVTVRNRYKELVEK 292
>sp|P61998|TF2B_PYRFU Transcription initiation factor IIB OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=tfb PE=1 SV=1
Length = 300
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 124/243 (51%), Gaps = 23/243 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C C+ E+++D G+ +C++CG V+E +D EWR F + S R G P +
Sbjct: 7 CPACES-AELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAF-DASQRERRSRTGAPESI 64
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSG-------SLGKLQAR---SSHPDRNLIQAFKSISA 115
LL GLST I G LSG L K Q+R S +RNL A +
Sbjct: 65 LLHDKGLSTEI------GIDRSLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDR 118
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
++ +L L +++ A +Y++ + +RGR+ E+++AAC+Y ACR PRT+ E +
Sbjct: 119 ITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADI 178
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
A KKEIGR+ FI ++L + + + +DY+ +F LG++ + + A E +
Sbjct: 179 AR-VDKKEIGRSYRFIARNL----NLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEIL 233
Query: 236 QKS 238
++
Sbjct: 234 DEA 236
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LGL ++ RA EI + + G++ +VAA LYIA
Sbjct: 201 PKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASL 260
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E + RT +E VA T R KE + K
Sbjct: 261 LEGEKRTQREVAEVARVTEVTVRNRYKELVEK 292
>sp|Q9HSF7|TF2B7_HALSA Transcription initiation factor IIB 7 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbG PE=3
SV=1
Length = 323
Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 115/241 (47%), Gaps = 19/241 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V + +C++CGLV+E +D EWR F N + RVG P
Sbjct: 29 CPECG-SDNLVKSSDRAELVCNDCGLVVEEEQIDPGPEWRAF-NHQERQEKSRVGAPTTQ 86
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 87 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 146
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 147 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 206
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +EM + Y+ RFCS L +T + A E +
Sbjct: 207 SR-VERKEIGRTYRYISQEL------GLEMKPVDPKKYVPRFCSELELTEEVQSKANEII 259
Query: 236 Q 236
+
Sbjct: 260 E 260
>sp|Q8TT29|TF2B_METAC Transcription initiation factor IIB OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=tfb
PE=3 SV=1
Length = 337
Score = 107 bits (268), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 128/252 (50%), Gaps = 27/252 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRVGG 61
C +C +V D+ + +C +CGLV++A VDE EWR F DHD RVG
Sbjct: 41 CPECGSRN-LVHDYERAELVCGDCGLVIDADFVDEGPEWRAF-----DHDQRMKRSRVGA 94
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFK 111
P+ + GLST+I + +S L K Q R S+ +RNL A
Sbjct: 95 PMTYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 154
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
+ M+ LGL T+++ A +Y+K D+ +RGR+ E + AA LY ACRQ + PRT+ E
Sbjct: 155 ELDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 214
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
V+ ++KEIGR FI + L ++++ DY+ RFCS L + + +
Sbjct: 215 IEEVSR-VSRKEIGRTYRFISREL------ALKLMPTSPIDYVPRFCSGLNLKGEVQSKS 267
Query: 232 QEAVQKSEDLDI 243
E ++++ + ++
Sbjct: 268 VEILRQASEKEL 279
>sp|A0B5T8|TF2B_METTP Transcription initiation factor IIB OS=Methanosaeta thermophila
(strain DSM 6194 / PT) GN=tfb PE=3 SV=1
Length = 337
Score = 107 bits (268), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 118/237 (49%), Gaps = 28/237 (11%)
Query: 3 DSYCADCKRL--TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP---- 56
D Y +C +V D+ + +CSECGLV++ +D+ EWR F DHD
Sbjct: 35 DKYTVECPECGSRALVRDYERAELVCSECGLVIDENFIDQGPEWRAF-----DHDQRMKR 89
Query: 57 VRVGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNL 106
RVG P+ + GLST+I + +S L K Q R S+ +RNL
Sbjct: 90 SRVGAPMTYTIHDKGLSTMIDWRNRDSYGKTISSKNRAQLYRLRKWQRRIRVSNATERNL 149
Query: 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKP 166
A + M+ LGL +++ A IY++ ++ +RGR+ E + AA LY ACRQ N P
Sbjct: 150 AFALSELDRMASALGLSRNVRETAAVIYRRAVEKNLIRGRSIEGVAAAALYAACRQCNVP 209
Query: 167 RTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGM 223
RT+ E V+ ++KEIGR F+ + L S+++ DY+ RFCS L +
Sbjct: 210 RTLDEIAEVSR-VSRKEIGRTYRFVSREL------SLKLMPTSPIDYIPRFCSGLNL 259
>sp|P0CW14|TF2B_METMZ Transcription initiation factor IIB OS=Methanosarcina mazei GN=tfb
PE=3 SV=1
Length = 337
Score = 107 bits (267), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 128/252 (50%), Gaps = 27/252 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRVGG 61
C +C +V D+ + +C +CGLV++A VDE EWR F DHD RVG
Sbjct: 41 CPECGSRN-LVHDYERAELVCGDCGLVIDADFVDEGPEWRAF-----DHDQRMKRSRVGA 94
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFK 111
P+ + GLST+I + +S L K Q R S+ +RNL A
Sbjct: 95 PMTYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 154
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
+ M+ LGL T+++ A +Y+K D+ +RGR+ E + AA LY ACRQ + PRT+ E
Sbjct: 155 ELDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 214
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
V+ ++KEIGR FI + L ++++ DY+ RFCS L + + +
Sbjct: 215 IEEVSR-VSRKEIGRTYRFISREL------ALKLMPTSPIDYVPRFCSGLNLKGEVQSKS 267
Query: 232 QEAVQKSEDLDI 243
E ++++ + ++
Sbjct: 268 VEILRQASEKEL 279
>sp|P0CW15|TF2B_METMA Transcription initiation factor IIB OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=tfb PE=3 SV=1
Length = 337
Score = 107 bits (267), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 128/252 (50%), Gaps = 27/252 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRVGG 61
C +C +V D+ + +C +CGLV++A VDE EWR F DHD RVG
Sbjct: 41 CPECGSRN-LVHDYERAELVCGDCGLVIDADFVDEGPEWRAF-----DHDQRMKRSRVGA 94
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFK 111
P+ + GLST+I + +S L K Q R S+ +RNL A
Sbjct: 95 PMTYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 154
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
+ M+ LGL T+++ A +Y+K D+ +RGR+ E + AA LY ACRQ + PRT+ E
Sbjct: 155 ELDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 214
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
V+ ++KEIGR FI + L ++++ DY+ RFCS L + + +
Sbjct: 215 IEEVSR-VSRKEIGRTYRFISREL------ALKLMPTSPIDYVPRFCSGLNLKGEVQSKS 267
Query: 232 QEAVQKSEDLDI 243
E ++++ + ++
Sbjct: 268 VEILRQASEKEL 279
>sp|Q9HRE6|TF2B2_HALSA Transcription initiation factor IIB 2 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbB PE=3
SV=1
Length = 325
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 123/247 (49%), Gaps = 26/247 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V+ D G+++C +CGLV+E +D EWR F N + + RVG P
Sbjct: 32 CPECG--GQVIDDEEHGESVCVDCGLVVEENGIDRGPEWRAF-NSTEKDEKSRVGAPTTN 88
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R+S +RNL QA
Sbjct: 89 MMHDKGLSTNIGWQDKDAYGNS--LSSNQRQKMQRLRKWNERFRTRNSK-ERNLKQALGE 145
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ + L GR+ E + A LY + RQ + PR++ E
Sbjct: 146 IERMASALGLPKEVRETASVIYRRALSEDLLPGRSIEGVATAALYASARQLSTPRSIDEV 205
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
+V+ + E R +IV+ L S+E+ + Y+ RF S+L + ++ + ++
Sbjct: 206 ANVSR-IDEMEFKRTYRYIVREL------SLEVAPADPAQYVPRFASDLDLPDEVERRSR 258
Query: 233 EAVQKSE 239
E + ++
Sbjct: 259 ELISNAQ 265
>sp|A8AC96|TF2B_IGNH4 Transcription initiation factor IIB OS=Ignicoccus hospitalis
(strain KIN4/I / DSM 18386 / JCM 14125) GN=tfb PE=3 SV=1
Length = 316
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 116/235 (49%), Gaps = 18/235 (7%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
T++VF+ G+ +C+ CG ++ VD+ EWR F E + R G PL+P L GL
Sbjct: 17 TDIVFNEETGEYVCARCGTIVLDRYVDQGPEWRAFTPEERERRG-RTGAPLSPTLHDHGL 75
Query: 73 STVIAKPTAGGSTELLSGS-------LGKLQARS---SHPDRNLIQAFKSISAMSDRLGL 122
STVI + LS L K Q R+ + DRNL A + M++ L L
Sbjct: 76 STVIDHRDRDALGKRLSPRKRQEVQRLRKWQLRARIQTGMDRNLTIAMNELDRMANLLNL 135
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
IK+ A IY+K ++ +RGR+ E++VAA +Y ACR ++PRT+ E +K
Sbjct: 136 PKQIKEEAAVIYRKAVEKGLVRGRSIESVVAAVIYAACRIHHQPRTLDEIAKKLE-VNRK 194
Query: 183 EIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQK 237
E+ R I K L+ +++ A D++ R L + ++ A + ++K
Sbjct: 195 EVARCYRLITKELK------LKVPIADAMDHIPRIGEALKLRGDIIEYAMKIMEK 243
>sp|Q9HJM2|TF2B2_THEAC Transcription initiation factor IIB 2 OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=tfbB PE=3 SV=1
Length = 307
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 126/248 (50%), Gaps = 19/248 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D+ G+ IC++CG V+E +D+ EWR F + D R G P+
Sbjct: 11 CPECNS-EHLIRDYEHGELICADCGAVIEDAYIDQGPEWRAF-DSDQDERRARTGSPMTY 68
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFKSISA 115
L GL+T I+ + + + K R S+ +RNL A + ++
Sbjct: 69 LSHDKGLATEISWSNKDYYGKRIPHKNRAQIYRVRKWHQRIRVSNAAERNLSLALQLLND 128
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
+ +LG+ IK+ A IY+K ++ +RGR+ E+IV A +Y ACR+ N PRT+ E S
Sbjct: 129 IGAKLGIPKDIKETAALIYRKAVEKNLIRGRSIESIVCASIYAACRKVNIPRTLDEI-SK 187
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
A+ KK+IG+A + K L+ + + Y+ +FC+ L + QA+ +++ V
Sbjct: 188 ASEVNKKKIGKAYRHLAKELDLNLKPTTPFS------YISQFCNKLDLDKQAIVISEDIV 241
Query: 236 QKSEDLDI 243
+++ + I
Sbjct: 242 RQAMSMGI 249
>sp|Q9YGA5|TFB2_HALVD Transcription initiation factor IIB 2 OS=Haloferax volcanii (strain
ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB
2012 / VKM B-1768 / DS2) GN=tfb2 PE=1 SV=1
Length = 332
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 119/249 (47%), Gaps = 22/249 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+TIC +CGLV+E VD EWR F + D RVG P
Sbjct: 37 CPECS--GHLVTDEEHGETICEDCGLVVEDTVVDRGPEWRAFDSAERDS-KSRVGAPTTK 93
Query: 66 LLSGGGLSTVIA-----------KPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
++ GLST I P + L + + R S +RNL QA I
Sbjct: 94 MMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSK-ERNLKQALGEID 152
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ + L GR+ E + + LY + R PR++ E
Sbjct: 153 RMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATSALYASARMAGTPRSLDELEK 212
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ K E+ R +IV+ L+ +E+ Y+ RF S LG++++A + A++
Sbjct: 213 VSR-VDKMELTRTYRYIVRELK------LEIKPADPEQYVPRFASELGLSDEAERQARQL 265
Query: 235 VQKSEDLDI 243
++ +++ I
Sbjct: 266 LRDAKETGI 274
>sp|Q979P7|TF2B2_THEVO Transcription initiation factor IIB 2 OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=tfbB PE=3 SV=1
Length = 313
Score = 104 bits (260), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 126/252 (50%), Gaps = 19/252 (7%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGG 61
A C +C ++ D+ G+ IC++CG V+E +D+ EWR F + D R G
Sbjct: 13 APKRCPECHS-EHLIRDYEHGELICADCGAVIEDSFIDQGPEWRAF-DSDQDERRARTGS 70
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFK 111
P+ L GL+T I+ + + + K R S+ +RNL A +
Sbjct: 71 PMTYLSHDKGLATEISWSNKDYYGKRIPHKNRAQIYRVRKWHQRIRVSNAAERNLSLALQ 130
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
++ + +LG+ IK+ + IY+K ++ +RGR+ E+IV A +Y ACR+ N PRT+ E
Sbjct: 131 LLNDIGAKLGIPKDIKETSALIYRKAVEKNLIRGRSIESIVCASIYAACRKVNIPRTLDE 190
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
A+ KK+IG+A + K L+ + + Y+ +FC+ L + QA+ +
Sbjct: 191 IAK-ASEVNKKKIGKAYRHLAKELDLNLRPTTPFS------YIAQFCNKLDLDKQAIVIS 243
Query: 232 QEAVQKSEDLDI 243
++ V+++ + I
Sbjct: 244 EDIVRQAMSMGI 255
>sp|B8GJQ9|TF2B_METPE Transcription initiation factor IIB OS=Methanosphaerula palustris
(strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=tfb PE=3
SV=1
Length = 334
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 125/255 (49%), Gaps = 27/255 (10%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VR 58
+S C +CK ++V D+ + +C CGLV++ +D EWR F DHD R
Sbjct: 35 ESVCPECKS-RQLVHDYERAELVCQNCGLVIDDDFIDRGPEWRAF-----DHDQRMKRSR 88
Query: 59 VGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQ 108
VG P+ + GLST+I +S L K Q R S+ +RNL
Sbjct: 89 VGAPMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAF 148
Query: 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT 168
A + M+ LGL +++ A +Y+ D+ +RGR+ E + AA LY ACRQ + PRT
Sbjct: 149 ALSELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRT 208
Query: 169 VKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAV 228
+ E V+ ++KEIGR FI + L +++ DY+ RFCS L + +
Sbjct: 209 LDEIAEVSR-VSRKEIGRTYRFISREL------GLKLLPTSPIDYVPRFCSGLTLKGEVQ 261
Query: 229 KAAQEAVQKSEDLDI 243
A E ++++ + ++
Sbjct: 262 SRAVEILRQAAEREL 276
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,181,274
Number of Sequences: 539616
Number of extensions: 3842546
Number of successful extensions: 10782
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 10455
Number of HSP's gapped (non-prelim): 174
length of query: 278
length of database: 191,569,459
effective HSP length: 116
effective length of query: 162
effective length of database: 128,974,003
effective search space: 20893788486
effective search space used: 20893788486
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)