Query 023713
Match_columns 278
No_of_seqs 165 out of 1073
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 11:31:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023713.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023713hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4bbr_M Transcription initiatio 100.0 8E-64 2.7E-68 458.7 12.8 261 3-268 21-293 (345)
2 3k7a_M Transcription initiatio 100.0 1.5E-60 5.3E-65 437.9 8.1 262 3-270 21-295 (345)
3 1ais_B TFB TFIIB, protein (tra 100.0 3.4E-34 1.2E-38 243.7 19.1 158 100-266 3-164 (200)
4 1c9b_A General transcription f 100.0 5.5E-31 1.9E-35 225.1 20.4 155 102-265 1-157 (207)
5 1zp2_A RNA polymerase II holoe 99.9 7.3E-22 2.5E-26 171.7 19.0 152 106-265 28-189 (235)
6 2ivx_A Cyclin-T2; transcriptio 99.8 1.6E-18 5.6E-23 152.3 21.1 152 107-266 32-203 (257)
7 2i53_A Cyclin K; cell cycle, t 99.8 1E-18 3.5E-23 153.6 19.0 152 107-266 42-211 (258)
8 3rgf_B Cyclin-C; protein kinas 99.8 1.6E-18 5.5E-23 154.7 17.9 150 107-264 44-211 (285)
9 3k1f_M Transcription initiatio 99.8 1E-19 3.5E-24 146.5 4.6 66 3-68 21-88 (197)
10 2b9r_A Human cyclin B1; cell c 99.8 4.9E-17 1.7E-21 143.9 20.1 150 107-265 39-193 (269)
11 1jkw_A Cyclin H; cell cycle, c 99.8 2.4E-17 8.1E-22 149.6 18.2 153 103-264 53-224 (323)
12 2pk2_A Cyclin-T1, protein TAT; 99.7 7.1E-18 2.4E-22 155.0 12.2 152 107-266 39-210 (358)
13 1dl6_A Transcription factor II 99.7 3.4E-18 1.2E-22 115.8 3.9 47 3-50 11-57 (58)
14 2cch_B Cyclin A2, cyclin-A; co 99.7 4.3E-16 1.5E-20 137.2 17.9 150 107-265 40-196 (260)
15 2w96_A G1/S-specific cyclin-D1 99.7 1.4E-15 4.9E-20 134.6 19.3 151 107-266 58-217 (271)
16 1g3n_C V-cyclin; cyclin-depend 99.6 8E-15 2.7E-19 128.8 16.3 149 107-264 52-209 (257)
17 2f2c_A Cyclin homolog, V-cycli 99.6 1.9E-14 6.4E-19 126.3 15.5 149 107-263 53-209 (254)
18 1pft_A TFIIB, PFTFIIBN; N-term 99.6 8.7E-16 3E-20 101.1 4.3 44 4-48 6-49 (50)
19 1ais_B TFB TFIIB, protein (tra 99.6 1.7E-14 5.9E-19 121.9 11.9 90 108-198 107-196 (200)
20 1w98_B Cyclin E, G1/S-specific 99.6 1.2E-13 4E-18 123.1 16.8 146 107-261 51-213 (283)
21 3g33_B CCND3 protein; Ser/Thr 99.5 3E-13 1E-17 121.7 16.4 150 107-265 72-230 (306)
22 1c9b_A General transcription f 99.4 2.7E-12 9.1E-17 109.0 12.3 90 108-198 101-190 (207)
23 4bbr_M Transcription initiatio 99.2 2.6E-12 8.8E-17 117.3 0.0 89 108-197 234-322 (345)
24 1f5q_B Gamma herpesvirus cycli 99.2 1.7E-09 5.8E-14 94.5 17.6 147 107-261 50-204 (252)
25 3k7a_M Transcription initiatio 99.0 4.3E-11 1.5E-15 109.3 0.0 88 108-196 234-321 (345)
26 3h4c_A Transcription factor TF 97.8 3.6E-05 1.2E-09 63.7 6.8 114 109-225 15-131 (260)
27 1zp2_A RNA polymerase II holoe 97.7 8.4E-05 2.9E-09 63.7 7.1 87 109-197 134-220 (235)
28 2cch_B Cyclin A2, cyclin-A; co 97.6 0.00014 4.8E-09 63.3 8.4 89 108-197 138-228 (260)
29 2b9r_A Human cyclin B1; cell c 97.6 8.6E-05 2.9E-09 65.0 6.2 87 109-196 138-224 (269)
30 3rgf_B Cyclin-C; protein kinas 97.5 0.00059 2E-08 60.2 9.8 86 109-197 157-242 (285)
31 2w96_A G1/S-specific cyclin-D1 97.4 0.00051 1.7E-08 60.1 8.3 89 109-198 157-258 (271)
32 2i53_A Cyclin K; cell cycle, t 97.3 0.00051 1.7E-08 59.5 8.0 90 108-197 150-251 (258)
33 2ivx_A Cyclin-T2; transcriptio 97.3 0.0012 4.2E-08 57.0 9.5 89 108-196 145-239 (257)
34 2f2c_A Cyclin homolog, V-cycli 97.2 0.0016 5.5E-08 56.3 9.1 86 110-196 153-247 (254)
35 3m03_A ORC6, origin recognitio 97.1 0.0026 8.9E-08 46.5 8.2 80 113-195 6-91 (95)
36 1g3n_C V-cyclin; cyclin-depend 97.1 0.0018 6.2E-08 56.1 8.5 88 109-197 151-248 (257)
37 2js4_A UPF0434 protein BB2007; 96.7 0.0012 4E-08 45.7 3.5 30 2-33 7-36 (70)
38 2jny_A Uncharacterized BCR; st 96.6 0.0014 4.7E-08 44.9 3.3 29 3-33 10-38 (67)
39 2jr6_A UPF0434 protein NMA0874 96.6 0.0013 4.6E-08 45.1 3.3 30 2-33 7-36 (68)
40 1qxf_A GR2, 30S ribosomal prot 96.6 0.00098 3.4E-08 45.0 2.3 30 4-34 8-37 (66)
41 1vq8_Z 50S ribosomal protein L 96.5 0.001 3.4E-08 47.6 2.1 31 4-36 28-58 (83)
42 3j20_W 30S ribosomal protein S 96.5 0.0013 4.3E-08 44.1 2.3 31 4-35 16-46 (63)
43 2pk7_A Uncharacterized protein 96.5 0.0014 4.6E-08 45.3 2.4 29 3-33 8-36 (69)
44 2hf1_A Tetraacyldisaccharide-1 96.4 0.0018 6.1E-08 44.5 2.8 28 4-33 9-36 (68)
45 2pk2_A Cyclin-T1, protein TAT; 96.4 0.0027 9.2E-08 57.8 4.6 89 109-197 153-247 (358)
46 3g33_B CCND3 protein; Ser/Thr 96.2 0.015 5E-07 51.7 8.6 87 110-197 172-267 (306)
47 2xzm_6 RPS27E; ribosome, trans 96.2 0.0021 7.2E-08 45.2 2.1 31 4-35 33-63 (81)
48 2r7g_A PP110, retinoblastoma-a 96.1 0.016 5.5E-07 52.3 8.0 71 105-175 214-287 (347)
49 3u5c_b RP61, YS20, 40S ribosom 96.1 0.0023 8E-08 45.0 2.0 31 4-35 35-65 (82)
50 4ell_A Retinoblastoma-associat 96.1 0.016 5.5E-07 53.3 8.1 70 106-175 279-351 (411)
51 3iz6_X 40S ribosomal protein S 95.9 0.0031 1E-07 44.8 1.8 31 4-35 37-67 (86)
52 4elj_A Retinoblastoma-associat 95.6 0.041 1.4E-06 53.5 9.0 70 105-174 523-595 (656)
53 2qdj_A Retinoblastoma-associat 95.4 0.075 2.6E-06 47.1 9.3 71 112-184 5-80 (304)
54 3j20_Y 30S ribosomal protein S 95.3 0.0096 3.3E-07 38.3 2.4 28 4-33 20-47 (50)
55 1w98_B Cyclin E, G1/S-specific 95.2 0.077 2.6E-06 46.4 8.7 80 109-196 151-241 (283)
56 2akl_A PHNA-like protein PA012 94.8 0.058 2E-06 41.3 5.8 28 3-33 27-54 (138)
57 2k4x_A 30S ribosomal protein S 94.3 0.021 7.3E-07 37.4 2.1 28 3-32 18-45 (55)
58 1jkw_A Cyclin H; cell cycle, c 94.2 0.22 7.5E-06 44.4 9.4 78 120-197 181-261 (323)
59 6rxn_A Rubredoxin; electron tr 93.8 0.016 5.4E-07 36.5 0.8 27 1-31 2-38 (46)
60 2kpi_A Uncharacterized protein 93.6 0.054 1.9E-06 35.5 3.2 27 3-33 10-38 (56)
61 4rxn_A Rubredoxin; electron tr 93.1 0.036 1.2E-06 36.1 1.6 18 1-22 1-18 (54)
62 1e8j_A Rubredoxin; iron-sulfur 92.6 0.039 1.3E-06 35.6 1.2 19 1-23 1-19 (52)
63 4elj_A Retinoblastoma-associat 92.5 0.79 2.7E-05 44.6 10.7 71 112-184 7-82 (656)
64 2k5r_A Uncharacterized protein 92.0 0.066 2.2E-06 39.2 2.0 30 2-33 7-63 (97)
65 1twf_L ABC10-alpha, DNA-direct 91.5 0.054 1.9E-06 37.2 1.0 27 4-33 29-56 (70)
66 2pmi_B PHO85 cyclin PHO80, ami 91.3 6.3 0.00022 34.4 14.1 104 109-220 77-184 (293)
67 3h0g_I DNA-directed RNA polyme 91.2 0.15 5.1E-06 38.4 3.2 31 2-34 3-37 (113)
68 1k81_A EIF-2-beta, probable tr 91.2 0.079 2.7E-06 31.4 1.3 29 5-33 2-31 (36)
69 1nui_A DNA primase/helicase; z 91.1 0.13 4.4E-06 44.1 3.2 28 4-32 15-42 (255)
70 2lnb_A Z-DNA-binding protein 1 91.0 0.31 1.1E-05 33.9 4.4 45 153-198 21-65 (80)
71 1qyp_A RNA polymerase II; tran 90.8 0.17 5.8E-06 33.1 2.9 31 4-35 16-55 (57)
72 3j21_i 50S ribosomal protein L 90.1 0.16 5.5E-06 35.9 2.4 32 3-36 35-66 (83)
73 1twf_I B12.6, DNA-directed RNA 89.5 0.19 6.5E-06 38.3 2.6 32 1-34 2-37 (122)
74 3jyw_9 60S ribosomal protein L 89.5 0.19 6.6E-06 34.5 2.3 32 3-36 26-57 (72)
75 3iz5_m 60S ribosomal protein L 89.1 0.21 7.2E-06 36.0 2.4 32 3-36 36-67 (92)
76 2v3b_B Rubredoxin 2, rubredoxi 89.1 0.12 4.1E-06 33.7 1.0 18 1-22 1-18 (55)
77 1ffk_W Ribosomal protein L37AE 88.7 0.2 6.8E-06 34.6 2.0 32 3-36 27-58 (73)
78 3cc2_Z 50S ribosomal protein L 88.4 0.22 7.5E-06 37.4 2.1 31 4-36 61-91 (116)
79 3izc_m 60S ribosomal protein R 88.3 0.24 8.1E-06 35.7 2.2 32 3-36 36-67 (92)
80 4a17_Y RPL37A, 60S ribosomal p 88.2 0.23 7.9E-06 36.4 2.1 30 4-35 37-66 (103)
81 2kn9_A Rubredoxin; metalloprot 88.2 0.16 5.5E-06 35.8 1.2 16 21-36 25-40 (81)
82 1wii_A Hypothetical UPF0222 pr 87.8 0.18 6.1E-06 36.0 1.3 43 4-46 24-76 (85)
83 1dx8_A Rubredoxin; electron tr 87.7 0.18 6.3E-06 34.6 1.3 8 4-11 8-15 (70)
84 1dxg_A Desulforedoxin; non-hem 86.8 0.33 1.1E-05 28.6 1.9 27 2-31 5-31 (36)
85 3qt1_I DNA-directed RNA polyme 86.6 0.33 1.1E-05 37.6 2.3 29 3-33 24-56 (133)
86 3j21_g 50S ribosomal protein L 85.7 0.2 6.8E-06 32.1 0.5 23 4-32 15-37 (51)
87 1gh9_A 8.3 kDa protein (gene M 85.6 0.39 1.3E-05 33.0 2.0 27 4-34 5-31 (71)
88 2apo_B Ribosome biogenesis pro 85.5 0.29 9.7E-06 32.5 1.2 25 2-34 5-29 (60)
89 1s24_A Rubredoxin 2; electron 84.4 0.25 8.5E-06 35.3 0.6 16 21-36 33-48 (87)
90 1tfi_A Transcriptional elongat 83.6 0.87 3E-05 28.9 2.9 30 3-32 9-46 (50)
91 1f5q_B Gamma herpesvirus cycli 83.5 6.1 0.00021 33.6 9.2 86 109-197 149-242 (252)
92 1yk4_A Rubredoxin, RD; electro 80.7 0.65 2.2E-05 29.8 1.5 12 24-35 3-14 (52)
93 3lwf_A LIN1550 protein, putati 80.2 3.6 0.00012 32.5 6.1 48 146-194 24-71 (159)
94 3u50_C Telomerase-associated p 79.6 1 3.5E-05 36.4 2.6 25 5-32 44-68 (172)
95 1gnf_A Transcription factor GA 78.2 0.77 2.6E-05 28.7 1.2 33 2-34 3-36 (46)
96 2heo_A Z-DNA binding protein 1 78.0 3.5 0.00012 27.4 4.6 33 161-194 20-52 (67)
97 3ga8_A HTH-type transcriptiona 78.0 0.9 3.1E-05 31.5 1.6 30 4-34 3-47 (78)
98 2jt1_A PEFI protein; solution 77.6 3.5 0.00012 28.5 4.6 32 164-196 22-53 (77)
99 3h0g_L DNA-directed RNA polyme 77.0 1.3 4.5E-05 29.5 2.1 27 4-33 22-48 (63)
100 2aus_D NOP10, ribosome biogene 76.4 0.79 2.7E-05 30.3 0.9 24 2-33 4-27 (60)
101 2ct7_A Ring finger protein 31; 76.1 1.6 5.5E-05 30.8 2.6 27 5-33 27-53 (86)
102 2y75_A HTH-type transcriptiona 75.9 6.3 0.00022 29.4 6.1 43 150-193 10-52 (129)
103 3t8r_A Staphylococcus aureus C 75.2 3.7 0.00013 31.7 4.7 46 148-194 10-55 (143)
104 1j1v_A Chromosomal replication 74.4 5.4 0.00019 28.6 5.1 41 154-197 36-77 (94)
105 3o9x_A Uncharacterized HTH-typ 73.6 1.4 4.7E-05 33.4 1.8 31 3-34 2-47 (133)
106 1ylf_A RRF2 family protein; st 71.6 5.6 0.00019 30.8 5.0 45 147-193 12-56 (149)
107 1vk6_A NADH pyrophosphatase; 1 71.0 2.8 9.4E-05 36.2 3.3 30 3-34 107-136 (269)
108 2fiy_A Protein FDHE homolog; F 70.4 2.5 8.5E-05 37.4 2.9 30 3-32 182-217 (309)
109 1twf_I B12.6, DNA-directed RNA 70.1 3.8 0.00013 30.9 3.5 32 4-35 73-112 (122)
110 2kdx_A HYPA, hydrogenase/ureas 69.8 1.7 6E-05 32.6 1.5 21 14-34 64-84 (119)
111 2vut_I AREA, nitrogen regulato 69.5 1.8 6.2E-05 26.5 1.3 31 4-34 2-33 (43)
112 2zjr_Z 50S ribosomal protein L 68.8 2.2 7.5E-05 28.2 1.7 24 4-34 31-54 (60)
113 2jpc_A SSRB; DNA binding prote 68.2 11 0.00037 23.8 5.1 32 166-198 13-44 (61)
114 4gat_A Nitrogen regulatory pro 67.5 1.8 6.1E-05 29.2 1.0 33 3-35 9-42 (66)
115 2jne_A Hypothetical protein YF 67.0 2.8 9.7E-05 30.3 2.0 26 4-33 33-58 (101)
116 2jrp_A Putative cytoplasmic pr 67.0 3.4 0.00012 28.9 2.4 29 1-34 1-29 (81)
117 1tty_A Sigma-A, RNA polymerase 66.9 9.7 0.00033 26.3 5.0 33 165-198 37-69 (87)
118 3lsg_A Two-component response 66.5 24 0.00081 24.8 7.2 38 153-191 6-43 (103)
119 1l1o_C Replication protein A 7 66.0 2.9 9.9E-05 33.8 2.2 27 4-33 44-72 (181)
120 1je8_A Nitrate/nitrite respons 65.8 16 0.00054 24.9 5.9 32 166-198 36-67 (82)
121 3v2d_5 50S ribosomal protein L 65.7 2 7E-05 28.3 1.0 23 4-33 31-53 (60)
122 3cng_A Nudix hydrolase; struct 65.4 4.1 0.00014 32.6 3.1 28 3-32 3-34 (189)
123 2kae_A GATA-type transcription 65.1 1.8 6.2E-05 29.6 0.7 30 4-34 9-41 (71)
124 2k9s_A Arabinose operon regula 64.4 23 0.00078 25.1 6.8 39 151-190 5-43 (107)
125 1qgp_A Protein (double strande 63.3 12 0.00042 25.5 4.8 31 164-195 29-59 (77)
126 1x3u_A Transcriptional regulat 63.0 19 0.00063 23.9 5.7 33 165-198 30-62 (79)
127 2kao_A Methionine-R-sulfoxide 63.0 4.5 0.00015 30.7 2.6 32 19-50 16-49 (124)
128 1u5k_A Hypothetical protein; O 62.9 4.8 0.00016 33.9 3.1 28 4-31 151-178 (244)
129 1fse_A GERE; helix-turn-helix 62.9 21 0.00071 23.2 5.9 32 166-198 26-57 (74)
130 4e2x_A TCAB9; kijanose, tetron 62.7 3.1 0.0001 37.7 2.0 15 24-38 54-68 (416)
131 3pvv_A Chromosomal replication 62.4 13 0.00044 27.0 5.0 41 154-197 40-80 (101)
132 2g2k_A EIF-5, eukaryotic trans 62.3 2.6 8.8E-05 33.9 1.2 30 4-33 97-129 (170)
133 2kv1_A Methionine-R-sulfoxide 62.0 3.1 0.00011 31.6 1.5 31 20-50 17-49 (124)
134 1vzi_A Desulfoferrodoxin; ferr 61.3 3.7 0.00013 31.3 1.9 29 3-34 7-35 (126)
135 3ulq_B Transcriptional regulat 60.9 9.6 0.00033 26.8 4.0 31 167-198 45-75 (90)
136 2lk0_A RNA-binding protein 5; 60.9 3.1 0.00011 23.6 1.1 14 20-33 2-15 (32)
137 3oou_A LIN2118 protein; protei 60.9 26 0.00089 24.9 6.6 39 151-191 7-45 (108)
138 2p7v_B Sigma-70, RNA polymeras 60.6 12 0.00042 24.3 4.3 33 165-198 24-56 (68)
139 4esj_A Type-2 restriction enzy 60.6 3.9 0.00013 34.6 2.0 30 4-34 35-67 (257)
140 3mao_A Methionine-R-sulfoxide 60.3 3.2 0.00011 30.6 1.3 32 19-50 9-42 (105)
141 3q87_A Putative uncharacterize 60.0 1.7 5.7E-05 33.2 -0.3 17 18-34 94-110 (125)
142 1qbj_A Protein (double-strande 60.0 17 0.0006 25.1 5.1 30 165-195 26-55 (81)
143 2e9h_A EIF-5, eukaryotic trans 59.9 4.1 0.00014 32.3 2.0 30 4-33 104-136 (157)
144 3e6c_C CPRK, cyclic nucleotide 59.7 25 0.00086 28.7 7.1 30 164-194 175-204 (250)
145 1ug2_A 2610100B20RIK gene prod 59.6 27 0.00091 24.9 5.9 41 156-197 44-86 (95)
146 1d0q_A DNA primase; zinc-bindi 59.2 6.9 0.00024 28.4 3.0 28 4-31 38-66 (103)
147 3dfx_A Trans-acting T-cell-spe 59.1 2.2 7.5E-05 28.4 0.2 34 3-36 7-41 (63)
148 3r0a_A Putative transcriptiona 59.0 14 0.00048 27.4 4.9 38 156-194 31-69 (123)
149 2fiy_A Protein FDHE homolog; F 58.8 7.4 0.00025 34.3 3.7 30 4-33 223-263 (309)
150 3oio_A Transcriptional regulat 58.5 36 0.0012 24.3 7.0 39 151-191 9-47 (113)
151 3p8b_A DNA-directed RNA polyme 58.2 2.8 9.6E-05 29.3 0.7 23 1-31 21-43 (81)
152 3b02_A Transcriptional regulat 57.6 19 0.00066 28.2 5.8 29 165-194 138-166 (195)
153 3mkl_A HTH-type transcriptiona 57.5 41 0.0014 24.3 7.3 38 151-190 9-46 (120)
154 3dv8_A Transcriptional regulat 56.6 34 0.0012 27.0 7.2 29 165-194 168-196 (220)
155 2k1p_A Zinc finger RAN-binding 56.6 4.3 0.00015 23.2 1.2 13 20-32 3-15 (33)
156 3a43_A HYPD, hydrogenase nicke 56.5 3 0.0001 32.3 0.6 23 13-35 60-82 (139)
157 2zkr_2 60S ribosomal protein L 56.3 3.8 0.00013 29.6 1.1 23 4-31 17-39 (97)
158 1p4w_A RCSB; solution structur 56.3 27 0.00092 25.0 5.8 32 166-198 49-80 (99)
159 2jmo_A Parkin; IBR, E3 ligase, 56.0 6.6 0.00023 27.2 2.3 29 3-33 25-60 (80)
160 2l1u_A MSRB2, methionine-R-sul 55.6 4.9 0.00017 31.3 1.7 32 19-50 33-66 (143)
161 3k69_A Putative transcription 55.5 10 0.00035 29.9 3.7 44 149-194 12-55 (162)
162 2k8d_A Peptide methionine sulf 55.4 5.1 0.00017 31.4 1.8 32 19-50 57-90 (151)
163 1ku3_A Sigma factor SIGA; heli 55.3 19 0.00064 23.7 4.6 31 165-196 29-59 (73)
164 1xd7_A YWNA; structural genomi 55.3 18 0.00062 27.6 5.1 44 146-193 6-49 (145)
165 1t6s_A Conserved hypothetical 55.0 25 0.00086 27.8 5.9 85 149-239 9-104 (162)
166 1zyb_A Transcription regulator 54.8 31 0.0011 27.8 6.8 29 165-194 185-213 (232)
167 2htj_A P fimbrial regulatory p 54.3 28 0.00097 23.4 5.5 29 165-194 13-41 (81)
168 2gau_A Transcriptional regulat 54.3 45 0.0015 26.6 7.7 30 164-194 178-207 (232)
169 3cxk_A Methionine-R-sulfoxide 54.2 4.7 0.00016 32.1 1.4 32 19-50 69-102 (164)
170 3la7_A Global nitrogen regulat 53.4 25 0.00086 28.7 6.1 30 164-194 191-220 (243)
171 3e0o_A Peptide methionine sulf 53.3 5 0.00017 31.2 1.4 32 19-50 38-71 (144)
172 3oou_A LIN2118 protein; protei 53.0 38 0.0013 24.0 6.3 71 113-191 24-95 (108)
173 3c57_A Two component transcrip 52.5 18 0.00061 25.5 4.3 31 167-198 43-73 (95)
174 3hcg_A Peptide methionine sulf 52.3 5.1 0.00017 31.3 1.3 31 19-49 39-71 (146)
175 3fx3_A Cyclic nucleotide-bindi 52.0 39 0.0013 27.1 7.0 30 164-194 176-205 (237)
176 2rnj_A Response regulator prot 51.5 23 0.00079 24.5 4.7 32 166-198 44-75 (91)
177 3hcj_A MSRB, peptide methionin 51.4 4.9 0.00017 31.6 1.1 31 19-49 46-78 (154)
178 2oz6_A Virulence factor regula 51.0 33 0.0011 26.8 6.2 29 165-194 163-191 (207)
179 3e97_A Transcriptional regulat 50.6 38 0.0013 27.1 6.6 45 149-194 150-202 (231)
180 3bvo_A CO-chaperone protein HS 50.4 6.5 0.00022 32.5 1.8 28 4-34 11-38 (207)
181 3bro_A Transcriptional regulat 50.2 31 0.001 25.3 5.6 38 156-194 40-77 (141)
182 2fmy_A COOA, carbon monoxide o 50.2 26 0.00089 27.9 5.5 29 165-194 166-194 (220)
183 4gop_C Putative uncharacterize 50.2 9 0.00031 35.3 2.9 28 4-34 309-338 (444)
184 2pg4_A Uncharacterized protein 49.1 23 0.0008 24.5 4.5 33 161-194 25-58 (95)
185 3ryp_A Catabolite gene activat 49.0 27 0.00092 27.4 5.4 29 165-194 166-194 (210)
186 3p2a_A Thioredoxin 2, putative 48.6 6.9 0.00024 29.4 1.6 33 4-36 6-38 (148)
187 2o8x_A Probable RNA polymerase 48.6 23 0.0008 22.6 4.2 31 166-197 31-61 (70)
188 1u8b_A ADA polyprotein; protei 48.5 31 0.0011 25.5 5.4 38 164-216 91-128 (133)
189 1bl0_A Protein (multiple antib 48.2 46 0.0016 24.4 6.3 42 148-191 10-51 (129)
190 1ovx_A ATP-dependent CLP prote 47.4 8.4 0.00029 25.9 1.6 28 3-32 18-49 (67)
191 3hug_A RNA polymerase sigma fa 47.3 23 0.00078 24.5 4.2 29 167-196 54-82 (92)
192 4ayb_P DNA-directed RNA polyme 47.2 9.3 0.00032 23.7 1.7 33 1-33 1-33 (48)
193 4hc9_A Trans-acting T-cell-spe 46.9 6.5 0.00022 29.4 1.1 32 3-34 5-37 (115)
194 2d1h_A ST1889, 109AA long hypo 46.9 27 0.00094 24.2 4.6 29 164-193 34-62 (109)
195 1xn7_A Hypothetical protein YH 46.8 27 0.00094 23.9 4.3 33 164-197 14-46 (78)
196 3k2z_A LEXA repressor; winged 46.7 29 0.001 27.8 5.2 38 156-194 14-51 (196)
197 3dkw_A DNR protein; CRP-FNR, H 46.4 36 0.0012 27.0 5.8 31 164-195 176-206 (227)
198 1uxc_A FRUR (1-57), fructose r 45.8 19 0.00063 23.7 3.2 22 167-189 1-22 (65)
199 2zcw_A TTHA1359, transcription 45.3 33 0.0011 26.9 5.4 29 165-194 145-173 (202)
200 3t72_q RNA polymerase sigma fa 45.3 80 0.0027 22.4 7.6 52 165-227 38-89 (99)
201 2ds5_A CLPX, ATP-dependent CLP 45.0 9.8 0.00033 24.1 1.6 26 3-30 11-40 (51)
202 2j6a_A Protein TRM112; transla 45.0 4 0.00014 31.7 -0.3 19 16-34 102-120 (141)
203 2fnf_X Putative RAS effector N 44.8 15 0.00052 24.8 2.7 28 3-36 35-62 (72)
204 1vfy_A Phosphatidylinositol-3- 44.0 15 0.00053 24.7 2.6 28 3-34 11-38 (73)
205 3lsg_A Two-component response 43.8 79 0.0027 21.9 7.3 72 112-191 21-93 (103)
206 1jhg_A Trp operon repressor; c 43.6 28 0.00095 25.3 4.1 27 164-191 56-82 (101)
207 2xi8_A Putative transcription 43.1 46 0.0016 20.6 4.9 47 165-227 13-59 (66)
208 1rfh_A RAS association (ralgds 42.9 16 0.00053 23.6 2.4 26 3-34 22-47 (59)
209 2riq_A Poly [ADP-ribose] polym 42.7 14 0.00048 29.2 2.6 23 4-32 79-101 (160)
210 3dwd_A ADP-ribosylation factor 42.6 7.9 0.00027 30.3 1.0 31 4-34 39-69 (147)
211 2z99_A Putative uncharacterize 42.6 44 0.0015 27.8 5.7 74 149-227 17-102 (219)
212 1q1h_A TFE, transcription fact 42.5 41 0.0014 23.9 5.0 31 163-194 30-60 (110)
213 2f9i_B Acetyl-coenzyme A carbo 42.4 4.6 0.00016 35.1 -0.4 40 4-48 31-80 (285)
214 2r1j_L Repressor protein C2; p 42.1 48 0.0016 20.6 4.9 46 166-227 18-63 (68)
215 3kcc_A Catabolite gene activat 42.0 45 0.0015 27.5 5.9 29 165-194 216-244 (260)
216 1u78_A TC3 transposase, transp 42.0 40 0.0014 24.7 5.1 71 113-190 25-102 (141)
217 3eus_A DNA-binding protein; st 41.9 73 0.0025 21.4 6.1 50 164-229 25-74 (86)
218 2l8n_A Transcriptional repress 41.8 13 0.00044 24.7 1.9 23 165-188 8-30 (67)
219 2fu4_A Ferric uptake regulatio 41.7 44 0.0015 22.3 4.9 32 162-194 28-65 (83)
220 2pmi_B PHO85 cyclin PHO80, ami 40.8 1.2E+02 0.004 26.3 8.3 59 205-265 72-135 (293)
221 2olm_A Nucleoporin-like protei 40.8 8.9 0.0003 29.7 1.1 31 4-34 26-56 (140)
222 3d0s_A Transcriptional regulat 40.7 26 0.0009 28.0 4.1 29 165-194 176-204 (227)
223 1bja_A Transcription regulator 40.7 40 0.0014 24.1 4.5 38 155-194 20-58 (95)
224 1r69_A Repressor protein CI; g 40.6 57 0.0019 20.4 5.1 46 165-227 13-58 (69)
225 3fym_A Putative uncharacterize 40.5 62 0.0021 24.0 5.9 51 163-226 13-66 (130)
226 2iqj_A Stromal membrane-associ 40.2 8.3 0.00029 29.6 0.8 31 4-34 28-58 (134)
227 1oyi_A Double-stranded RNA-bin 40.2 39 0.0013 23.5 4.2 29 167-196 31-59 (82)
228 2owa_A Arfgap-like finger doma 40.1 8.4 0.00029 29.8 0.8 31 4-34 37-67 (138)
229 2wus_R RODZ, putative uncharac 40.1 1E+02 0.0035 22.2 7.3 53 162-227 16-71 (112)
230 1ft9_A Carbon monoxide oxidati 40.0 24 0.00082 28.2 3.8 29 165-194 162-190 (222)
231 3nrv_A Putative transcriptiona 40.0 48 0.0017 24.4 5.3 31 162-194 51-81 (148)
232 2p57_A GTPase-activating prote 39.7 7.1 0.00024 30.4 0.4 31 4-34 38-68 (144)
233 1ryq_A DNA-directed RNA polyme 39.5 6.3 0.00022 26.7 0.0 20 3-30 11-30 (69)
234 3oio_A Transcriptional regulat 39.4 76 0.0026 22.5 6.1 71 113-191 26-97 (113)
235 3eco_A MEPR; mutlidrug efflux 39.3 44 0.0015 24.3 4.9 30 164-194 45-74 (139)
236 2p5k_A Arginine repressor; DNA 39.1 56 0.0019 20.4 4.8 27 164-191 17-48 (64)
237 1zs4_A Regulatory protein CII; 39.1 46 0.0016 23.2 4.5 20 167-187 25-44 (83)
238 2nnn_A Probable transcriptiona 38.9 1.1E+02 0.0036 22.0 7.5 28 166-194 52-79 (140)
239 1j5y_A Transcriptional regulat 38.8 52 0.0018 26.1 5.5 32 161-193 31-62 (187)
240 3iwz_A CAP-like, catabolite ac 38.4 24 0.00082 28.2 3.5 29 165-194 186-214 (230)
241 2con_A RUH-035 protein, NIN on 38.2 15 0.00051 25.5 1.8 10 2-11 29-38 (79)
242 4ev0_A Transcription regulator 38.0 27 0.00092 27.6 3.7 54 165-221 162-215 (216)
243 3mn2_A Probable ARAC family tr 37.9 1E+02 0.0035 21.5 10.1 39 151-191 4-42 (108)
244 1ku9_A Hypothetical protein MJ 37.8 47 0.0016 24.3 4.9 29 164-193 39-67 (152)
245 2bgc_A PRFA; bacterial infecti 37.6 95 0.0032 24.9 7.2 29 165-194 167-197 (238)
246 2x4h_A Hypothetical protein SS 37.5 59 0.002 23.9 5.4 31 163-194 28-58 (139)
247 1tc3_C Protein (TC3 transposas 37.4 35 0.0012 19.6 3.4 23 167-190 22-44 (51)
248 2yw8_A RUN and FYVE domain-con 37.2 21 0.00071 24.7 2.5 29 4-36 20-48 (82)
249 1wd2_A Ariadne-1 protein homol 37.2 14 0.00048 24.1 1.5 29 3-33 6-36 (60)
250 3cuo_A Uncharacterized HTH-typ 37.1 36 0.0012 23.3 3.9 30 163-193 35-64 (99)
251 2xzm_9 RPS31E; ribosome, trans 37.0 22 0.00075 28.9 2.9 29 4-34 114-142 (189)
252 2eth_A Transcriptional regulat 36.8 52 0.0018 24.6 5.1 28 166-194 58-85 (154)
253 2lkp_A Transcriptional regulat 36.8 59 0.002 23.3 5.2 31 165-197 44-74 (119)
254 2k9s_A Arabinose operon regula 36.7 1E+02 0.0035 21.5 6.4 70 113-190 23-93 (107)
255 2crr_A Stromal membrane-associ 36.7 9.5 0.00032 29.6 0.7 31 4-34 30-60 (141)
256 3kz3_A Repressor protein CI; f 36.0 43 0.0015 22.1 4.0 46 165-226 24-69 (80)
257 3i4p_A Transcriptional regulat 35.5 44 0.0015 25.8 4.5 33 162-195 13-45 (162)
258 1zug_A Phage 434 CRO protein; 35.4 74 0.0025 19.9 5.0 46 165-227 15-60 (71)
259 3c5k_A HD6, histone deacetylas 35.2 21 0.00071 26.3 2.3 25 4-36 25-49 (109)
260 4fx0_A Probable transcriptiona 35.2 1.1E+02 0.0036 23.0 6.6 51 164-226 50-100 (148)
261 3fm5_A Transcriptional regulat 35.1 46 0.0016 24.7 4.5 31 162-193 50-80 (150)
262 2au3_A DNA primase; zinc ribbo 35.1 23 0.00077 32.2 3.0 28 4-31 35-63 (407)
263 2jrr_A Uncharacterized protein 34.7 15 0.00052 24.6 1.3 16 19-34 36-51 (67)
264 2crw_A ARF GAP 3, ADP-ribosyla 34.7 11 0.00037 29.5 0.7 31 4-34 30-60 (149)
265 1adr_A P22 C2 repressor; trans 34.6 71 0.0024 20.3 4.9 46 166-227 18-63 (76)
266 2b5a_A C.BCLI; helix-turn-heli 34.5 78 0.0027 20.2 5.1 47 165-227 22-68 (77)
267 1l3l_A Transcriptional activat 34.1 93 0.0032 25.3 6.5 33 165-198 187-219 (234)
268 3bj6_A Transcriptional regulat 34.1 55 0.0019 24.2 4.8 28 166-194 54-81 (152)
269 1vq8_1 50S ribosomal protein L 33.7 12 0.00042 24.2 0.7 22 5-31 19-40 (57)
270 2k02_A Ferrous iron transport 33.7 34 0.0012 24.0 3.1 31 164-195 14-44 (87)
271 1sfx_A Conserved hypothetical 33.6 46 0.0016 22.9 4.0 29 165-194 33-61 (109)
272 3j21_e 50S ribosomal protein L 33.6 15 0.00052 24.1 1.2 23 4-31 18-40 (62)
273 1b0n_A Protein (SINR protein); 33.5 1.2E+02 0.0041 21.0 7.6 22 165-187 13-34 (111)
274 1on2_A Transcriptional regulat 33.4 67 0.0023 23.7 5.1 28 165-193 21-48 (142)
275 2kdx_A HYPA, hydrogenase/ureas 33.3 23 0.00077 26.3 2.3 26 4-33 74-100 (119)
276 3jth_A Transcription activator 33.1 70 0.0024 22.0 4.9 28 165-193 35-62 (98)
277 3bd1_A CRO protein; transcript 33.1 81 0.0028 20.6 5.0 42 168-226 13-56 (79)
278 2dbb_A Putative HTH-type trans 32.9 50 0.0017 24.9 4.4 31 163-194 20-50 (151)
279 3szt_A QCSR, quorum-sensing co 32.9 72 0.0025 26.2 5.7 33 165-198 189-221 (237)
280 1ub9_A Hypothetical protein PH 32.9 54 0.0018 22.3 4.2 30 165-195 29-58 (100)
281 3omt_A Uncharacterized protein 32.8 53 0.0018 21.1 4.0 46 165-226 20-65 (73)
282 3qq6_A HTH-type transcriptiona 32.8 74 0.0025 20.9 4.8 48 165-227 22-69 (78)
283 1y0u_A Arsenical resistance op 32.8 50 0.0017 22.8 4.0 29 165-194 42-70 (96)
284 2rdp_A Putative transcriptiona 32.8 66 0.0023 23.6 5.0 28 166-194 56-83 (150)
285 2frh_A SARA, staphylococcal ac 32.7 47 0.0016 24.2 4.1 33 161-194 48-80 (127)
286 2jvm_A Uncharacterized protein 32.7 18 0.00063 25.1 1.5 22 13-34 41-64 (80)
287 2q0o_A Probable transcriptiona 32.7 79 0.0027 25.8 5.9 33 165-198 189-221 (236)
288 3irb_A Uncharacterized protein 32.7 18 0.00063 27.9 1.8 23 4-32 48-70 (145)
289 2lr8_A CAsp8-associated protei 38.8 9.4 0.00032 25.7 0.0 41 155-196 24-65 (70)
290 3b7h_A Prophage LP1 protein 11 32.5 68 0.0023 20.6 4.5 48 165-227 19-66 (78)
291 3mzy_A RNA polymerase sigma-H 32.5 48 0.0016 24.7 4.2 31 165-196 123-153 (164)
292 3sub_A ADP-ribosylation factor 32.5 13 0.00045 29.5 0.8 31 4-34 23-53 (163)
293 1lj9_A Transcriptional regulat 32.2 63 0.0021 23.6 4.8 28 166-194 43-70 (144)
294 3pvv_A Chromosomal replication 32.2 1.4E+02 0.0047 21.3 7.0 49 207-255 4-72 (101)
295 2l02_A Uncharacterized protein 32.0 1.2E+02 0.0042 21.0 5.7 48 149-198 6-53 (82)
296 3r1f_A ESX-1 secretion-associa 31.9 83 0.0029 23.6 5.4 66 167-240 62-129 (135)
297 3f6w_A XRE-family like protein 31.8 74 0.0025 20.9 4.7 47 165-227 26-72 (83)
298 1z91_A Organic hydroperoxide r 31.7 49 0.0017 24.3 4.1 28 166-194 54-81 (147)
299 3bdd_A Regulatory protein MARR 31.6 72 0.0025 23.1 5.0 28 166-194 45-72 (142)
300 2gnr_A Conserved hypothetical 31.6 22 0.00075 27.5 2.0 23 4-32 48-70 (145)
301 2hr3_A Probable transcriptiona 31.5 88 0.003 22.8 5.6 30 164-194 48-77 (147)
302 2cfx_A HTH-type transcriptiona 31.5 51 0.0018 24.7 4.2 31 163-194 16-46 (144)
303 1xsv_A Hypothetical UPF0122 pr 31.2 60 0.002 23.6 4.3 30 166-196 41-70 (113)
304 3ech_A MEXR, multidrug resista 31.1 52 0.0018 24.2 4.1 28 166-194 51-78 (142)
305 3e0m_A Peptide methionine sulf 31.1 17 0.00059 31.9 1.4 31 19-49 205-237 (313)
306 1i1g_A Transcriptional regulat 30.9 55 0.0019 24.2 4.3 30 164-194 16-45 (141)
307 2pn6_A ST1022, 150AA long hypo 30.9 58 0.002 24.4 4.4 31 163-194 14-44 (150)
308 1kbe_A Kinase suppressor of RA 30.8 21 0.00073 22.2 1.5 23 4-33 15-37 (49)
309 1z2q_A LM5-1; membrane protein 30.5 30 0.001 23.9 2.4 27 4-34 22-48 (84)
310 2ict_A Antitoxin HIGA; helix-t 30.5 1.1E+02 0.0037 20.7 5.5 45 166-226 21-65 (94)
311 2fbh_A Transcriptional regulat 30.5 90 0.0031 22.6 5.4 31 163-194 49-79 (146)
312 2cyy_A Putative HTH-type trans 30.4 56 0.0019 24.7 4.3 30 164-194 19-48 (151)
313 1y07_A Desulfoferrodoxin (RBO) 30.4 17 0.00059 27.5 1.2 29 4-35 8-37 (128)
314 3deu_A Transcriptional regulat 30.4 71 0.0024 24.4 4.9 31 163-194 65-95 (166)
315 3cjn_A Transcriptional regulat 30.3 69 0.0024 24.0 4.8 29 165-194 65-93 (162)
316 2vn2_A DNAD, chromosome replic 30.3 1.6E+02 0.0055 21.6 8.6 73 164-245 48-122 (128)
317 3t7l_A Zinc finger FYVE domain 30.2 27 0.00093 24.5 2.2 29 4-36 21-49 (90)
318 2fbi_A Probable transcriptiona 30.2 67 0.0023 23.3 4.6 28 166-194 50-77 (142)
319 3lcz_A YCZA, inhibitor of trap 30.2 20 0.00068 22.7 1.3 21 4-30 10-30 (53)
320 3bs3_A Putative DNA-binding pr 30.0 59 0.002 20.8 3.8 46 165-226 22-67 (76)
321 2k9q_A Uncharacterized protein 29.8 1.1E+02 0.0039 19.6 5.8 46 165-226 14-59 (77)
322 1x4u_A Zinc finger, FYVE domai 29.8 40 0.0014 23.2 2.9 27 4-34 15-41 (84)
323 2cg4_A Regulatory protein ASNC 29.8 58 0.002 24.6 4.3 31 163-194 19-49 (152)
324 2kko_A Possible transcriptiona 29.7 89 0.003 22.1 5.0 28 165-193 37-64 (108)
325 1vd4_A Transcription initiatio 29.6 21 0.00072 22.4 1.4 31 4-34 15-50 (62)
326 1y7y_A C.AHDI; helix-turn-heli 29.5 73 0.0025 20.1 4.2 46 165-226 25-70 (74)
327 2fjr_A Repressor protein CI; g 29.5 89 0.0031 24.3 5.5 43 168-227 22-64 (189)
328 2a61_A Transcriptional regulat 29.3 82 0.0028 22.9 5.0 29 165-194 46-74 (145)
329 1joc_A EEA1, early endosomal a 29.3 28 0.00094 26.2 2.2 28 4-35 70-97 (125)
330 2ewt_A BLDD, putative DNA-bind 29.2 81 0.0028 19.8 4.4 46 165-226 20-67 (71)
331 3s8q_A R-M controller protein; 29.2 1E+02 0.0036 20.0 5.1 47 165-227 23-69 (82)
332 2qvo_A Uncharacterized protein 29.1 1.4E+02 0.0047 20.4 6.0 29 164-193 28-56 (95)
333 1s7o_A Hypothetical UPF0122 pr 28.9 66 0.0023 23.4 4.2 30 166-196 38-67 (113)
334 2oqg_A Possible transcriptiona 28.9 60 0.0021 22.8 4.0 28 165-193 33-60 (114)
335 2kpj_A SOS-response transcript 28.8 1.2E+02 0.004 20.6 5.4 49 163-227 19-67 (94)
336 2fa5_A Transcriptional regulat 28.7 94 0.0032 23.1 5.4 29 165-194 62-90 (162)
337 2ofy_A Putative XRE-family tra 28.7 1.2E+02 0.0041 20.0 5.4 45 168-227 29-73 (86)
338 3cdh_A Transcriptional regulat 28.5 78 0.0027 23.5 4.8 29 165-194 56-84 (155)
339 3jw4_A Transcriptional regulat 28.3 53 0.0018 24.3 3.8 34 160-194 51-84 (148)
340 4b8x_A SCO5413, possible MARR- 28.3 54 0.0018 24.6 3.8 31 162-193 47-77 (147)
341 3g3z_A NMB1585, transcriptiona 27.7 92 0.0031 22.7 5.0 28 166-194 45-72 (145)
342 2qsb_A UPF0147 protein TA0600; 27.6 1.6E+02 0.0055 20.7 7.0 65 102-181 8-72 (89)
343 3tgn_A ADC operon repressor AD 27.6 88 0.003 22.8 4.9 26 167-193 52-77 (146)
344 1wfk_A Zinc finger, FYVE domai 27.4 37 0.0013 23.8 2.4 26 4-33 10-35 (88)
345 2nyx_A Probable transcriptiona 27.4 71 0.0024 24.3 4.4 28 166-194 59-86 (168)
346 2p5v_A Transcriptional regulat 27.2 63 0.0022 24.7 4.1 30 164-194 22-51 (162)
347 1y02_A CARP2, FYVE-ring finger 27.2 27 0.00091 26.2 1.7 29 4-36 20-48 (120)
348 1r1u_A CZRA, repressor protein 27.2 69 0.0023 22.5 4.0 31 165-197 38-68 (106)
349 2w7n_A TRFB transcriptional re 27.0 1.7E+02 0.0058 21.0 6.0 43 148-196 21-63 (101)
350 2gxg_A 146AA long hypothetical 27.0 98 0.0033 22.5 5.1 30 164-194 48-77 (146)
351 2qdj_A Retinoblastoma-associat 26.8 91 0.0031 27.2 5.4 45 215-262 7-57 (304)
352 3e6m_A MARR family transcripti 26.6 70 0.0024 24.0 4.2 28 166-194 67-94 (161)
353 4glx_A DNA ligase; inhibitor, 26.5 32 0.0011 33.0 2.5 33 4-38 406-441 (586)
354 1jgs_A Multiple antibiotic res 26.5 99 0.0034 22.2 5.0 29 165-194 47-75 (138)
355 4cpa_I Metallocarboxypeptidase 26.4 16 0.00055 21.1 0.3 24 5-29 4-27 (38)
356 2f9y_B Acetyl-coenzyme A carbo 26.4 17 0.0006 31.7 0.7 42 4-49 25-75 (304)
357 1nha_A TFIIF-alpha, transcript 26.4 1.6E+02 0.0056 20.3 5.8 49 177-240 17-67 (82)
358 1xwr_A Regulatory protein CII; 26.3 50 0.0017 23.7 3.0 22 167-189 24-45 (97)
359 2l8e_A Polyhomeotic-like prote 26.1 18 0.00063 22.6 0.5 22 14-35 9-30 (49)
360 1l8d_A DNA double-strand break 26.1 20 0.00068 26.1 0.8 8 4-11 48-55 (112)
361 2hzt_A Putative HTH-type trans 25.9 1.3E+02 0.0046 21.0 5.5 30 164-194 25-55 (107)
362 1m2k_A Silent information regu 25.9 15 0.00052 31.0 0.2 34 4-41 122-160 (249)
363 3nqo_A MARR-family transcripti 25.9 89 0.003 24.4 4.9 30 163-193 54-83 (189)
364 2w0t_A Lethal(3)malignant brai 25.8 27 0.00093 21.2 1.2 16 18-33 1-16 (43)
365 3tqn_A Transcriptional regulat 25.7 66 0.0023 23.2 3.7 29 165-194 31-60 (113)
366 2x48_A CAG38821; archeal virus 25.7 51 0.0017 20.0 2.7 22 167-189 32-53 (55)
367 3o47_A ADP-ribosylation factor 25.5 18 0.00061 31.7 0.6 31 4-34 38-68 (329)
368 2b0l_A GTP-sensing transcripti 25.5 72 0.0025 22.7 3.8 29 165-194 41-70 (102)
369 3qp6_A CVIR transcriptional re 25.5 61 0.0021 27.2 4.0 33 165-198 211-243 (265)
370 3g5g_A Regulatory protein; tra 25.5 1.2E+02 0.0043 21.0 5.1 46 165-226 40-85 (99)
371 3k0l_A Repressor protein; heli 25.5 70 0.0024 24.1 4.0 28 166-194 60-87 (162)
372 2w25_A Probable transcriptiona 25.5 73 0.0025 23.9 4.1 30 164-194 19-48 (150)
373 1s3j_A YUSO protein; structura 25.4 73 0.0025 23.6 4.1 28 166-194 51-78 (155)
374 1n0z_A ZNF265; zinc finger, RN 25.3 23 0.00079 21.6 0.9 15 18-32 9-25 (45)
375 2dk5_A DNA-directed RNA polyme 25.3 1.1E+02 0.0038 21.3 4.7 29 164-193 34-62 (91)
376 2bx9_A Anti-trap, AT, tryptoph 25.3 35 0.0012 21.5 1.8 21 4-30 10-30 (53)
377 1rqg_A Methionyl-tRNA syntheta 25.2 33 0.0011 33.7 2.4 24 4-34 141-164 (722)
378 1dvp_A HRS, hepatocyte growth 25.1 41 0.0014 27.6 2.7 29 3-35 161-189 (220)
379 4ets_A Ferric uptake regulatio 25.1 21 0.00071 28.0 0.8 13 22-34 106-118 (162)
380 2ctt_A DNAJ homolog subfamily 25.1 30 0.001 24.8 1.7 9 4-12 46-54 (104)
381 2hku_A A putative transcriptio 25.1 1.3E+02 0.0043 23.3 5.7 41 147-189 21-61 (215)
382 3pqk_A Biofilm growth-associat 25.0 82 0.0028 21.8 4.1 28 165-193 35-62 (102)
383 3mn2_A Probable ARAC family tr 24.9 1.7E+02 0.006 20.2 8.5 68 113-190 21-93 (108)
384 2zc2_A DNAD-like replication p 24.7 1E+02 0.0034 20.5 4.3 58 186-255 5-62 (78)
385 2pex_A Transcriptional regulat 24.6 1E+02 0.0035 22.7 4.8 29 165-194 60-88 (153)
386 1twf_J DNA-directed RNA polyme 24.3 21 0.00073 24.1 0.6 13 24-36 5-17 (70)
387 3bpv_A Transcriptional regulat 24.3 1.3E+02 0.0045 21.5 5.3 29 165-194 42-70 (138)
388 2x5c_A Hypothetical protein OR 24.1 27 0.00091 25.0 1.1 9 4-12 53-61 (131)
389 2qzg_A Conserved uncharacteriz 24.0 2E+02 0.0067 20.4 6.5 65 102-181 12-76 (94)
390 3trb_A Virulence-associated pr 23.9 1.5E+02 0.0051 20.9 5.3 48 163-226 24-71 (104)
391 4ham_A LMO2241 protein; struct 23.9 72 0.0025 23.7 3.7 28 165-193 36-64 (134)
392 2e1c_A Putative HTH-type trans 23.8 79 0.0027 24.7 4.1 29 165-194 40-68 (171)
393 1taf_B TFIID TBP associated fa 23.7 99 0.0034 20.7 3.9 32 209-240 7-49 (70)
394 2wiu_B HTH-type transcriptiona 23.7 1.3E+02 0.0044 19.8 4.8 44 165-224 24-67 (88)
395 4aik_A Transcriptional regulat 23.6 1.4E+02 0.0048 22.3 5.4 31 162-193 42-72 (151)
396 1sfu_A 34L protein; protein/Z- 23.5 99 0.0034 21.1 3.9 31 166-197 29-59 (75)
397 3b73_A PHIH1 repressor-like pr 23.5 91 0.0031 22.7 4.1 33 160-194 22-56 (111)
398 1yio_A Response regulatory pro 23.3 1.4E+02 0.0049 22.9 5.7 31 167-198 158-188 (208)
399 1ma3_A SIR2-AF2, transcription 23.3 30 0.001 29.2 1.6 34 4-41 124-166 (253)
400 3gbg_A TCP pilus virulence reg 23.3 1.7E+02 0.0057 24.1 6.4 41 147-189 167-207 (276)
401 2k2d_A Ring finger and CHY zin 23.2 34 0.0012 23.6 1.5 10 24-33 38-47 (79)
402 3lpe_B DNA-directed RNA polyme 23.2 21 0.00074 23.2 0.5 20 4-31 2-21 (59)
403 2owo_A DNA ligase; protein-DNA 23.2 46 0.0016 32.5 3.0 33 4-38 406-441 (671)
404 3clo_A Transcriptional regulat 23.2 1.4E+02 0.0047 24.7 5.8 33 165-198 211-243 (258)
405 3hrs_A Metalloregulator SCAR; 23.2 79 0.0027 25.6 4.1 31 163-194 17-47 (214)
406 1or7_A Sigma-24, RNA polymeras 23.2 86 0.0029 24.1 4.3 30 166-196 156-185 (194)
407 1r1t_A Transcriptional repress 23.1 1.5E+02 0.0053 21.4 5.4 31 165-197 58-88 (122)
408 2qww_A Transcriptional regulat 23.0 1.1E+02 0.0039 22.4 4.8 29 165-194 54-82 (154)
409 1d5y_A ROB transcription facto 23.0 1.1E+02 0.0038 25.4 5.2 78 151-230 5-103 (292)
410 4fxe_A Antitoxin RELB; toxin/a 23.0 1.8E+02 0.0063 19.7 5.6 44 121-171 7-50 (79)
411 1i27_A Transcription factor II 22.9 1.8E+02 0.006 19.7 5.0 49 177-240 8-58 (73)
412 1mkm_A ICLR transcriptional re 22.9 1.6E+02 0.0054 24.2 6.0 31 162-193 19-49 (249)
413 2ia0_A Putative HTH-type trans 22.9 1.1E+02 0.0037 23.8 4.8 30 164-194 29-58 (171)
414 1yc5_A NAD-dependent deacetyla 22.7 35 0.0012 28.6 1.8 34 4-41 122-163 (246)
415 2lfw_A PHYR sigma-like domain; 22.6 83 0.0028 23.8 3.9 31 165-196 108-138 (157)
416 3dn7_A Cyclic nucleotide bindi 22.5 18 0.00062 28.2 0.0 29 163-192 165-193 (194)
417 3u2r_A Regulatory protein MARR 22.5 73 0.0025 24.1 3.6 29 164-193 60-88 (168)
418 1z7u_A Hypothetical protein EF 22.5 1E+02 0.0035 21.9 4.2 29 165-194 34-63 (112)
419 3h99_A Methionyl-tRNA syntheta 22.4 33 0.0011 32.4 1.8 25 4-35 156-180 (560)
420 2i5o_A DNA polymerase ETA; zin 22.4 24 0.00082 20.9 0.5 15 21-35 7-21 (39)
421 1o5l_A Transcriptional regulat 22.3 42 0.0014 26.6 2.2 30 164-194 162-191 (213)
422 1xmk_A Double-stranded RNA-spe 22.1 97 0.0033 21.2 3.7 28 166-194 25-53 (79)
423 4a18_A RPL37, ribosomal protei 22.0 28 0.00095 24.8 0.9 23 4-31 17-39 (94)
424 3neu_A LIN1836 protein; struct 21.9 89 0.003 22.9 3.8 29 165-194 35-64 (125)
425 2bv6_A MGRA, HTH-type transcri 21.6 64 0.0022 23.5 3.0 29 165-194 50-78 (142)
426 2yve_A Transcriptional regulat 21.6 1.4E+02 0.0047 22.6 5.1 41 147-189 5-46 (185)
427 2ppt_A Thioredoxin-2; thiredox 21.6 24 0.00082 26.9 0.5 30 4-33 15-44 (155)
428 1ptq_A Protein kinase C delta 21.5 61 0.0021 19.5 2.4 29 3-34 11-39 (50)
429 3bja_A Transcriptional regulat 21.5 66 0.0022 23.2 3.0 29 165-194 46-74 (139)
430 3by6_A Predicted transcription 21.4 88 0.003 23.0 3.7 29 165-194 33-62 (126)
431 3h5t_A Transcriptional regulat 21.2 59 0.002 28.1 3.1 25 164-189 7-31 (366)
432 3op9_A PLI0006 protein; struct 21.1 2.2E+02 0.0074 19.9 8.7 22 166-188 22-43 (114)
433 3lju_X ARF-GAP with dual PH do 21.0 29 0.001 31.3 1.0 31 4-34 35-65 (386)
434 3oop_A LIN2960 protein; protei 20.9 1.4E+02 0.0048 21.6 4.9 29 165-194 50-78 (143)
435 2l0k_A Stage III sporulation p 20.9 75 0.0026 22.4 3.0 23 167-190 21-43 (93)
436 1lmb_3 Protein (lambda repress 20.9 1E+02 0.0036 20.5 3.8 46 165-226 29-74 (92)
437 3cec_A Putative antidote prote 20.8 1.5E+02 0.0052 20.4 4.8 47 165-227 30-76 (104)
438 2hu9_A MERP, mercuric transpor 20.7 38 0.0013 25.7 1.5 10 3-12 1-10 (130)
439 3f2b_A DNA-directed DNA polyme 20.7 42 0.0014 34.5 2.2 31 5-36 504-540 (1041)
440 3zyq_A Hepatocyte growth facto 20.6 55 0.0019 27.0 2.6 29 4-36 165-193 (226)
441 2enz_A NPKC-theta, protein kin 20.6 73 0.0025 20.5 2.8 31 3-36 23-53 (65)
442 3iz5_l 60S ribosomal protein L 20.6 30 0.001 24.6 0.8 22 5-31 18-39 (94)
443 1jko_C HIN recombinase, DNA-in 20.5 47 0.0016 19.4 1.7 22 167-189 22-43 (52)
444 2eby_A Putative HTH-type trans 20.5 1.7E+02 0.0059 20.4 5.2 48 163-226 21-68 (113)
445 4fe7_A Xylose operon regulator 20.5 4E+02 0.014 23.2 8.7 83 113-217 324-407 (412)
446 1q1a_A HST2 protein; ternary c 20.0 39 0.0013 29.1 1.6 19 23-41 163-181 (289)
No 1
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=100.00 E-value=8e-64 Score=458.71 Aligned_cols=261 Identities=31% Similarity=0.535 Sum_probs=173.4
Q ss_pred CCCCCCCCC-CCceeEeCCCCceEcCCCcccccccccccccchhhccCCC-CCCCCCcccCCCCCcccCCCcceEEecCC
Q 023713 3 DSYCADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES-SDHDPVRVGGPLNPLLSGGGLSTVIAKPT 80 (278)
Q Consensus 3 ~~~Cp~Cg~-~~~vv~D~~~G~~vC~~CG~Vl~e~~id~~~ewr~f~~~~-~~~~~~r~G~~~~~~~~~~~~~t~i~~~~ 80 (278)
...||+||+ ++++++|+.+|++||.+||+|++|++||+|||||+|++++ ++.|++|+|+|.++++||.|++|.|++++
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlVl~e~~iD~g~EWR~f~~d~~~~~d~sRvG~~~~~~~~~~glsT~I~~~~ 100 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGE 100 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGTEEEETTTCBEEESCCBCHHHHHTTTSCSCSSSCCSSCCEEEECHHHHCSCCCCEEECCS
T ss_pred CCcCCCCCCCCCceeEECCCCcEEeCCCCCCccCcccccCccccCCCcccccCCCcCCCCCCCCccccCCCcceeecCCC
Confidence 468999996 4689999999999999999999999999999999999765 47889999999999999999999999764
Q ss_pred CCCCccccccccccccccC--CCchhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHH
Q 023713 81 AGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYI 158 (278)
Q Consensus 81 ~~~~~~~l~~~l~~~~~~~--~~~er~l~~~~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~gr~~~~~aAAclY~ 158 (278)
+.++ ...++|++||++. +++||+|.+++..|.++|+.|+||+.++++|..||+++++.++++||+.+.++|||||+
T Consensus 101 -~~~~-~~~~~L~r~q~r~~~~~~er~L~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYi 178 (345)
T 4bbr_M 101 -TTDM-RFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILI 178 (345)
T ss_dssp -SCCH-HHHHHHHHHHHHTCCCCSSSSTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHH
T ss_pred -Ccch-hhHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHH
Confidence 2321 1234588898875 68999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhcccc------cccCCCCHHHHHHHHHhhcCCCHHHHHHHH
Q 023713 159 ACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQS------VEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232 (278)
Q Consensus 159 acR~~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~~~~~------~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~ 232 (278)
|||++++|+|++||+++ +++++++|+++|+.|.+.|+++..+. .++++++|++||+|||++|+|++++.+.|+
T Consensus 179 ACR~~~~prtl~eI~~~-~~v~~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~v~~~A~ 257 (345)
T 4bbr_M 179 GCRRAEVARTFKEIQSL-IHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAE 257 (345)
T ss_dssp HHHHTCCBCCHHHHHHH-HTCCTTHHHHHHHHHHHCC-------------------------------------------
T ss_pred HHHhcCCCccHHHHHHH-hCCCHHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHHHHHHHH
Confidence 99999999999999996 89999999999999999999752111 136788999999999999999999999999
Q ss_pred HHHHHhhhcC--CCCChhHHHHHHHHHHHHHHHHHHHh
Q 023713 233 EAVQKSEDLD--IRLILVFFSLFLVETHIQLIVWAFMR 268 (278)
Q Consensus 233 ~i~~~~~~~~--~Gr~P~~iaaA~v~~~~~~~~~~~~~ 268 (278)
+|++.+.+.| .||+|.+||||+| |+++.++.+-+
T Consensus 258 ~i~~~~~~~~i~~GR~P~~IAAAaI--ylAa~l~g~~~ 293 (345)
T 4bbr_M 258 YTAKKCKEIKEIAGKSPITIAVVSI--YLNILLFQIPI 293 (345)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHhcccccCCChHHHHHHHH--HHHHHHhCCCC
Confidence 9999999988 6999999999999 99999887644
No 2
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-60 Score=437.86 Aligned_cols=262 Identities=31% Similarity=0.533 Sum_probs=163.3
Q ss_pred CCCCCCCCCCC-ceeEeCCCCceEcCCCcccccccccccccchhhccCCC-CCCCCCcccCCCCCcccCCCcceEEecCC
Q 023713 3 DSYCADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES-SDHDPVRVGGPLNPLLSGGGLSTVIAKPT 80 (278)
Q Consensus 3 ~~~Cp~Cg~~~-~vv~D~~~G~~vC~~CG~Vl~e~~id~~~ewr~f~~~~-~~~~~~r~G~~~~~~~~~~~~~t~i~~~~ 80 (278)
...||+||+.+ ++++|+.+|++||++||+|++|++||++||||+|++++ ++.|++|+|+|.++++||.|++|.|++++
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~e~~id~~~EwR~F~~~~~~~~~~srvG~~~~~~~~~~~l~T~I~~~~ 100 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGE 100 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCCCCCCCTTCCCCCC--------------CCCCCSSSCCCCCCCCCCTT
T ss_pred CCcCcCCCCCCCceEEECCCCCEecCCCCeEcccccccCCccccccccccccCCCCCccCCCCCccccCCCCceeeccCC
Confidence 46899999832 69999999999999999999999999999999999753 46789999999999999999999998753
Q ss_pred -CCCCccccccccccccccC--CCchhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHH
Q 023713 81 -AGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLY 157 (278)
Q Consensus 81 -~~~~~~~l~~~l~~~~~~~--~~~er~l~~~~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~gr~~~~~aAAclY 157 (278)
.++++ .++|++||++. +++||+|.+++.+|+++|+.|+||+.++++|..||+++++.++++||+.+.++|||||
T Consensus 101 ~~~~~~---~r~l~~~~~~~~~~~~er~l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAcly 177 (345)
T 3k7a_M 101 TTDMRF---TKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASIL 177 (345)
T ss_dssp SCCHHH---HHHHHHHHHHHTTSSCCTTHHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTT
T ss_pred CCCchh---hhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHH
Confidence 23333 23578888763 7899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhcc------cccccCCCCHHHHHHHHHhhcCCCHHHHHHH
Q 023713 158 IACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMG------QSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231 (278)
Q Consensus 158 ~acR~~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~~~------~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A 231 (278)
+|||++++|+|++||+.+ +++++++|+++|+.|.+.|+.... ..+.+++.+|.+||+|||+.|+|++++.+.|
T Consensus 178 iAcR~e~~prtl~ei~~~-~~v~~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~~v~~~A 256 (345)
T 3k7a_M 178 IGCRRAEVARTFKEIQSL-IHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSA 256 (345)
T ss_dssp TTSBTTBSSCCHHHHHHS-SSCCSHHHHHHHHHHHHHHTCC---------------------------------------
T ss_pred HHHHHcCCCccHHHHHHH-HCCCHHHHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCHHHHHHH
Confidence 999999999999999996 899999999999999999982100 0012788999999999999999999999999
Q ss_pred HHHHHHhhhcC--CCCChhHHHHHHHHHHHHHHHHHHHhcc
Q 023713 232 QEAVQKSEDLD--IRLILVFFSLFLVETHIQLIVWAFMRCI 270 (278)
Q Consensus 232 ~~i~~~~~~~~--~Gr~P~~iaaA~v~~~~~~~~~~~~~~~ 270 (278)
++|++.+.+.| .||+|.+||||+| |||..+.++-+..
T Consensus 257 ~~i~~~~~~~~l~~Gr~P~~IAaAaI--ylAa~~~~~~~t~ 295 (345)
T 3k7a_M 257 EYTAKKCKEIKEIAGKSPITIAVVSI--YLNILLFQIPITA 295 (345)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHhchhcCCCHHHHHHHHH--HHHHHHHCCCCCH
Confidence 99999999988 6999999999999 9999998765443
No 3
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=100.00 E-value=3.4e-34 Score=243.74 Aligned_cols=158 Identities=25% Similarity=0.450 Sum_probs=147.6
Q ss_pred CCchhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCC
Q 023713 100 SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179 (278)
Q Consensus 100 ~~~er~l~~~~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~gr~~~~~aAAclY~acR~~~~p~tl~eia~~~~~v 179 (278)
+++||+|.+++++|.++|+.|+||+.+.++|..+|+++++++.++|++++.++|||||+|||+++.|++++||+.+ +++
T Consensus 3 ~~~er~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~-~~v 81 (200)
T 1ais_B 3 DAAERNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADI-ARV 81 (200)
T ss_dssp -----CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHH-TTS
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHH-HCC
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999996 899
Q ss_pred CHHHHHHHHHHHHHHhhhhcccccccCC--CCHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhcC--CCCChhHHHHHHH
Q 023713 180 TKKEIGRAKEFIVKHLEAEMGQSVEMGT--IHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLD--IRLILVFFSLFLV 255 (278)
Q Consensus 180 ~~~~i~~~~~~l~~~L~~~~~~~~~~~~--~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~--~Gr~P~~iaaA~v 255 (278)
++++|+++|+.|.+.|++. +++ .+|.+||+||++.|++++++.+.|++|++.+.+.| .||+|.+||||+|
T Consensus 82 ~~~~i~~~~~~l~~~L~~~------~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAal 155 (200)
T 1ais_B 82 DKKEIGRSYRFIARNLNLT------PKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAAL 155 (200)
T ss_dssp CHHHHHHHHHHHHHHTTCC------TTTTCCCGGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccc------CCcCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHH
Confidence 9999999999999999987 777 89999999999999999999999999999999987 6999999999999
Q ss_pred HHHHHHHHHHH
Q 023713 256 ETHIQLIVWAF 266 (278)
Q Consensus 256 ~~~~~~~~~~~ 266 (278)
|+++.+.+.
T Consensus 156 --y~A~~~~~~ 164 (200)
T 1ais_B 156 --YIASLLEGE 164 (200)
T ss_dssp --HHHHHHTTC
T ss_pred --HHHHHHhCC
Confidence 999987654
No 4
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.97 E-value=5.5e-31 Score=225.10 Aligned_cols=155 Identities=42% Similarity=0.678 Sum_probs=148.8
Q ss_pred chhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCH
Q 023713 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181 (278)
Q Consensus 102 ~er~l~~~~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~gr~~~~~aAAclY~acR~~~~p~tl~eia~~~~~v~~ 181 (278)
+||+|.+++++|+++|.+|+||+.++++|..+|+++++.+.++|++++.++|||+|+|||.++.|++++||+.+ ++++.
T Consensus 1 ~er~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~~-~~~~~ 79 (207)
T 1c9b_A 1 SDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAV-SRISK 79 (207)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHT-SSSCH
T ss_pred CchHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHH-HCCCH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999996 89999
Q ss_pred HHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhcC--CCCChhHHHHHHHHHHH
Q 023713 182 KEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLD--IRLILVFFSLFLVETHI 259 (278)
Q Consensus 182 ~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~--~Gr~P~~iaaA~v~~~~ 259 (278)
++|+++|+.|.+.|+++ ++..+|..||.||++.|++++++.+.|+.+++.+.+.+ .||+|.+||||+| |+
T Consensus 80 ~~i~~~~~~ll~~L~~~------l~~~~p~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAai--yl 151 (207)
T 1c9b_A 80 KEIGRCFKLILKALETS------VDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAI--YM 151 (207)
T ss_dssp HHHHHHHHHHHHHTTCC------CCCCCTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHH--HH
T ss_pred HHHHHHHHHHHHHHCCC------cCcCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHH--HH
Confidence 99999999999999987 78899999999999999999999999999999999877 6999999999999 99
Q ss_pred HHHHHH
Q 023713 260 QLIVWA 265 (278)
Q Consensus 260 ~~~~~~ 265 (278)
|+.+.+
T Consensus 152 A~~~~~ 157 (207)
T 1c9b_A 152 ASQASA 157 (207)
T ss_dssp HHHTSS
T ss_pred HHHHHC
Confidence 988754
No 5
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.89 E-value=7.3e-22 Score=171.68 Aligned_cols=152 Identities=20% Similarity=0.228 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCC-CcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHc-------
Q 023713 106 LIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRG-RNQEAIVAACLYIACRQENKPRTVKEFCSVAN------- 177 (278)
Q Consensus 106 l~~~~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~g-r~~~~~aAAclY~acR~~~~p~tl~eia~~~~------- 177 (278)
...+.++|.+++..|+||+.+..+|..+|++++..+.+++ +++..+++||+|+|||.++.|++++||+.+..
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~~~~ 107 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKV 107 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcccHHHHHHHHHHHccchh
Confidence 4678999999999999999999999999999999988888 99999999999999999999999999988532
Q ss_pred CCCHHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhcC--CCCChhHHHHHHH
Q 023713 178 GTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLD--IRLILVFFSLFLV 255 (278)
Q Consensus 178 ~v~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~--~Gr~P~~iaaA~v 255 (278)
..+.++|.++++.|.+.|+++ +...+|..||.+|++.+++++++.+.|+.+++.+...+ .|++|..||+|||
T Consensus 108 ~~~~~~I~~~E~~iL~~L~f~------l~~~~P~~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai 181 (235)
T 1zp2_A 108 KLSRSNISEIEFEIISVLDAF------LIVHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAAL 181 (235)
T ss_dssp CCCHHHHHHHHHHHHHHTTTC------CCCCCTHHHHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHCCCc------EEecChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHH
Confidence 578999999999999999987 77889999999999999999999999999999998766 7999999999999
Q ss_pred HHHHHHHHHH
Q 023713 256 ETHIQLIVWA 265 (278)
Q Consensus 256 ~~~~~~~~~~ 265 (278)
|+|..+.+
T Consensus 182 --~lA~~~~~ 189 (235)
T 1zp2_A 182 --LISCCNDE 189 (235)
T ss_dssp --HHHHTSCT
T ss_pred --HHHHHhcC
Confidence 99987654
No 6
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=99.82 E-value=1.6e-18 Score=152.34 Aligned_cols=152 Identities=14% Similarity=0.165 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHc---------
Q 023713 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVAN--------- 177 (278)
Q Consensus 107 ~~~~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~gr~~~~~aAAclY~acR~~~~p~tl~eia~~~~--------- 177 (278)
..+.++|.+++..|+||+.+..+|..+|++++..+.++++++..+++||+|+|||.++.|++++||..+..
T Consensus 32 ~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~p~~l~d~~~~~~~~~~~~~~~ 111 (257)
T 2ivx_A 32 QQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLHPLEPL 111 (257)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHCTTSCC
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccCCcCHHHHHHHHHHHhccCCCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999986521
Q ss_pred -CCC-------HHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHhh-hcC--CCCC
Q 023713 178 -GTT-------KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSE-DLD--IRLI 246 (278)
Q Consensus 178 -~v~-------~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~-~~~--~Gr~ 246 (278)
.++ .++|.++.+.|.+.|+++ +...+|..|+.+|++.++.++++.+.|+.+++.+. ..+ .+..
T Consensus 112 ~~~~~~~y~~~~~~I~~~E~~iL~~L~f~------l~~~~P~~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~ 185 (257)
T 2ivx_A 112 LDTKCDAYLQQTRELVILETIMLQTLGFE------ITIEHPHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYK 185 (257)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHTTTC------CCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHcccc------eEeeCcHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCC
Confidence 122 788999999999999987 77889999999999999999999999999998876 344 7999
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 023713 247 LVFFSLFLVETHIQLIVWAF 266 (278)
Q Consensus 247 P~~iaaA~v~~~~~~~~~~~ 266 (278)
|..||+||| |+|..+.+.
T Consensus 186 Ps~IAaAai--~lA~~~~~~ 203 (257)
T 2ivx_A 186 PTVIACVCI--HLACKWSNW 203 (257)
T ss_dssp HHHHHHHHH--HHHHHHHTC
T ss_pred HHHHHHHHH--HHHHHHhCC
Confidence 999999999 999998764
No 7
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.81 E-value=1e-18 Score=153.62 Aligned_cols=152 Identities=15% Similarity=0.213 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcC-C------
Q 023713 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG-T------ 179 (278)
Q Consensus 107 ~~~~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~gr~~~~~aAAclY~acR~~~~p~tl~eia~~~~~-v------ 179 (278)
..+.++|.+++..|+||+.+..+|..+|++++..+.+++++...+++||+|+|||.++.|++++||..+... +
T Consensus 42 ~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~~~~l~d~~~~~~~~~~~~~~~ 121 (258)
T 2i53_A 42 REGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQFG 121 (258)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHSCHHHHG
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHccccccccHHHHHHHHHHHhchhhhh
Confidence 467899999999999999999999999999999999999999999999999999999999999999864110 1
Q ss_pred -----CHHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCH----HHHHHHHHHHHHhhhcC--CCCChh
Q 023713 180 -----TKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTN----QAVKAAQEAVQKSEDLD--IRLILV 248 (278)
Q Consensus 180 -----~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~----~v~~~A~~i~~~~~~~~--~Gr~P~ 248 (278)
+.++|.+..+.|.+.|+.+ +...+|..|+.+|++.|+.++ ++.+.|+.+++.+.... .+.+|.
T Consensus 122 ~~~~~~~~~i~~~E~~iL~~L~f~------l~~~~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps 195 (258)
T 2i53_A 122 QFGDDPKEEVMVLERILLQTIKFD------LQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPE 195 (258)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTTTC------CCCCCHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHH
T ss_pred hhhhhHHHHHHHHHHHHHHHCCCc------eeccChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChH
Confidence 3679999999999999987 778899999999999999987 68899999999998765 799999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023713 249 FFSLFLVETHIQLIVWAF 266 (278)
Q Consensus 249 ~iaaA~v~~~~~~~~~~~ 266 (278)
.||+|+| |+|..+.+.
T Consensus 196 ~IAaAai--~lA~~~~~~ 211 (258)
T 2i53_A 196 IIAVAVM--YLAGRLCKF 211 (258)
T ss_dssp HHHHHHH--HHHHHHHTC
T ss_pred HHHHHHH--HHHHHHhCC
Confidence 9999999 999988764
No 8
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.80 E-value=1.6e-18 Score=154.74 Aligned_cols=150 Identities=15% Similarity=0.224 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHc--------
Q 023713 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPR-TVKEFCSVAN-------- 177 (278)
Q Consensus 107 ~~~~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~gr~~~~~aAAclY~acR~~~~p~-tl~eia~~~~-------- 177 (278)
..+.++|.+++..|+||+.+..+|..+|++++..+.++++++..+++||+|+|||.++.|+ ++.||..+..
T Consensus 44 ~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~~ 123 (285)
T 3rgf_B 44 IFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFS 123 (285)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHccccc
Confidence 4679999999999999999999999999999999999999999999999999999999998 7888866421
Q ss_pred -------CCCHHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhcC--CCCChh
Q 023713 178 -------GTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLD--IRLILV 248 (278)
Q Consensus 178 -------~v~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~--~Gr~P~ 248 (278)
....++|.++.+.|.+.|+++ +...+|..|+.+|+..|++++++.+.|+.+++.+.... .+..|.
T Consensus 124 ~~~~~~~~~~~~~Il~~E~~iL~~L~f~------l~v~~P~~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~Ps 197 (285)
T 3rgf_B 124 YAFPKEFPYRMNHILECEFYLLELMDCC------LIVYHPYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPF 197 (285)
T ss_dssp TTCCSCCCCCHHHHHHHHHHHHHHTTTC------CCCCCSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSCHH
T ss_pred ccCchhhHHHHHHHHHHHHHHHHHcCCC------eEeCChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccCHH
Confidence 146799999999999999987 77789999999999999999999999999999988765 699999
Q ss_pred HHHHHHHHHHHHHHHH
Q 023713 249 FFSLFLVETHIQLIVW 264 (278)
Q Consensus 249 ~iaaA~v~~~~~~~~~ 264 (278)
.||+|+| |+|..+.
T Consensus 198 ~IAaAai--ylA~~~~ 211 (285)
T 3rgf_B 198 MIALACL--HVACVVQ 211 (285)
T ss_dssp HHHHHHH--HHHHHHT
T ss_pred HHHHHHH--HHHHHHc
Confidence 9999999 9988754
No 9
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1e-19 Score=146.52 Aligned_cols=66 Identities=32% Similarity=0.617 Sum_probs=58.2
Q ss_pred CCCCCCCCCC-CceeEeCCCCceEcCCCcccccccccccccchhhccCCC-CCCCCCcccCCCCCccc
Q 023713 3 DSYCADCKRL-TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES-SDHDPVRVGGPLNPLLS 68 (278)
Q Consensus 3 ~~~Cp~Cg~~-~~vv~D~~~G~~vC~~CG~Vl~e~~id~~~ewr~f~~~~-~~~~~~r~G~~~~~~~~ 68 (278)
...||+||+. +++++|+.+|++||.+||+|++|++||.|||||+|++++ ++.+++|+|+|.++...
T Consensus 21 ~~~CPECGs~~t~IV~D~erGE~VCsdCGLVLEEriID~GPEWRAFsnDD~~~dDpSRVGAPs~~~~~ 88 (197)
T 3k1f_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNXXXXXXXXXXXXXXXXXXXX 88 (197)
T ss_dssp CCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCCCCCBCHHHHHHHHHCCCTTTTCSCCCBCCBCCHHH
T ss_pred CeECcCCCCcCCeEEEeCCCCEEEEcCCCCCcCCceeECCCCCcCcCCcccccccccccccccccccc
Confidence 4689999982 479999999999999999999999999999999999754 46789999999887653
No 10
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=99.76 E-value=4.9e-17 Score=143.93 Aligned_cols=150 Identities=13% Similarity=0.122 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHc--CCCHHH
Q 023713 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENK-PRTVKEFCSVAN--GTTKKE 183 (278)
Q Consensus 107 ~~~~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~gr~~~~~aAAclY~acR~~~~-p~tl~eia~~~~--~v~~~~ 183 (278)
....++|.+++..++|++.+...|..+++++.....+++++...+++||+|+|||.++. |++++|+..+ . ..+.++
T Consensus 39 ~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~-~~~~~~~~e 117 (269)
T 2b9r_A 39 AILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFV-TDNTYTKHQ 117 (269)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHH-TCSSSCHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHH-hcCCCCHHH
Confidence 45788999999999999999999999999999988889999999999999999999887 8999999885 4 378999
Q ss_pred HHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhcC--CCCChhHHHHHHHHHHHHH
Q 023713 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLD--IRLILVFFSLFLVETHIQL 261 (278)
Q Consensus 184 i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~--~Gr~P~~iaaA~v~~~~~~ 261 (278)
|.++.+.|.+.|+.+ +...+|.+|+.||++.++++.++...|+.+++.+.... .+.+|..||||+| |++.
T Consensus 118 I~~mE~~IL~~L~f~------l~~~tp~~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai--~lA~ 189 (269)
T 2b9r_A 118 IRQMEMKILRALNFG------LGRPLPLHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAF--SLAL 189 (269)
T ss_dssp HHHHHHHHHHHTTSC------CCCCCHHHHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHH--HHHH
T ss_pred HHHHHHHHHHHcCCc------cCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHH--HHHH
Confidence 999999999999987 77889999999999999999999999999999887644 7999999999999 8887
Q ss_pred HHHH
Q 023713 262 IVWA 265 (278)
Q Consensus 262 ~~~~ 265 (278)
.+.+
T Consensus 190 ~~l~ 193 (269)
T 2b9r_A 190 KILD 193 (269)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 7653
No 11
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.76 E-value=2.4e-17 Score=149.61 Aligned_cols=153 Identities=11% Similarity=0.114 Sum_probs=134.9
Q ss_pred hhHH-HHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCC
Q 023713 103 DRNL-IQAFKSISAMSDRLG--LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179 (278)
Q Consensus 103 er~l-~~~~~~I~~i~~~L~--Lp~~v~e~A~~i~k~~~~~~~~~gr~~~~~aAAclY~acR~~~~p~tl~eia~~~~~v 179 (278)
|+.+ ..+.++|.++|..|+ ||+.+..+|..+|++++..+.+++.++..+++||+|+|||.++.|+++.||+.+ ...
T Consensus 53 E~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~-~~~ 131 (323)
T 1jkw_A 53 EMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGN-LRE 131 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGG-SSS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHH-hcc
Confidence 4444 456799999999999 999999999999999999999999999999999999999999999999999774 444
Q ss_pred C-------HHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhc-------CCCHHHHHHHHHHHHHhhhcC--C
Q 023713 180 T-------KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNL-------GMTNQAVKAAQEAVQKSEDLD--I 243 (278)
Q Consensus 180 ~-------~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L-------~l~~~v~~~A~~i~~~~~~~~--~ 243 (278)
+ .++|.++.+.|.+.|+++ +...+|..||.+|+..| +.++++.+.|+.+++.+.... .
T Consensus 132 ~p~~~~~~~~~Il~~E~~iL~~L~f~------l~v~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l 205 (323)
T 1jkw_A 132 SPLGQEKALEQILEYELLLIQQLNFH------LIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYL 205 (323)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTTC------CCCCCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHH
T ss_pred ChhhhHHHHHHHHHHHHHHHHHCCCc------EEcCChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHH
Confidence 4 588999999999999987 77889999999999776 334678899999999987765 6
Q ss_pred CCChhHHHHHHHHHHHHHHHH
Q 023713 244 RLILVFFSLFLVETHIQLIVW 264 (278)
Q Consensus 244 Gr~P~~iaaA~v~~~~~~~~~ 264 (278)
+..|..||+||| |+|..+.
T Consensus 206 ~~~Ps~IAaAai--~lA~~~~ 224 (323)
T 1jkw_A 206 LYTPSQIALTAI--LSSASRA 224 (323)
T ss_dssp HSCHHHHHHHHH--HHHHHHH
T ss_pred cCCHHHHHHHHH--HHHHHHc
Confidence 999999999999 9998763
No 12
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.74 E-value=7.1e-18 Score=154.99 Aligned_cols=152 Identities=13% Similarity=0.162 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHc---------
Q 023713 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVAN--------- 177 (278)
Q Consensus 107 ~~~~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~gr~~~~~aAAclY~acR~~~~p~tl~eia~~~~--------- 177 (278)
..+.++|.+++..|+||+.+..+|..||++++....++++++..+++||||+|||.++.|++++||..++.
T Consensus 39 ~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~p~~l~d~v~v~~~~~~~~~~~ 118 (358)
T 2pk2_A 39 QQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQESL 118 (358)
T ss_dssp HHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHTTHHHHHCSSSCC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcccccc
Confidence 46799999999999999999999999999999999999999999999999999999999999999976421
Q ss_pred -CC-------CHHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh-cC--CCCC
Q 023713 178 -GT-------TKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED-LD--IRLI 246 (278)
Q Consensus 178 -~v-------~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~-~~--~Gr~ 246 (278)
.+ ..++|.++.+.|.+.|+++ +...+|..||.+|+..|++++++.+.|+.+++.+.. .. .+..
T Consensus 119 ~~~~~~~y~~~~~~Il~~E~~IL~~L~f~------L~v~~P~~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~ 192 (358)
T 2pk2_A 119 PDTRSEAYLQQVQDLVILESIILQTLGFE------LTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYT 192 (358)
T ss_dssp CCTTSHHHHGGGTGGGTHHHHHHHHTTTC------CCCCCTTHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSC
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHcCCc------eeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccC
Confidence 11 2567889999999999987 778899999999999999999999999999988763 33 7999
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 023713 247 LVFFSLFLVETHIQLIVWAF 266 (278)
Q Consensus 247 P~~iaaA~v~~~~~~~~~~~ 266 (278)
|..||+||| |+|+.+.+.
T Consensus 193 Ps~IAaAAI--~lA~~~l~~ 210 (358)
T 2pk2_A 193 PPVVACVCI--HLACKWSNW 210 (358)
T ss_dssp HHHHTTTTT--TTHHHHTTC
T ss_pred HHHHHHHHH--HHHHHHhCC
Confidence 999999999 999988664
No 13
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=99.71 E-value=3.4e-18 Score=115.76 Aligned_cols=47 Identities=43% Similarity=0.777 Sum_probs=43.5
Q ss_pred CCCCCCCCCCCceeEeCCCCceEcCCCcccccccccccccchhhccCC
Q 023713 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANE 50 (278)
Q Consensus 3 ~~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~e~~id~~~ewr~f~~~ 50 (278)
...||+||+ ..+++|+.+|++||.+||+|++|++||.|||||+|+++
T Consensus 11 ~~~Cp~C~~-~~lv~D~~~ge~vC~~CGlVl~e~~iD~gpEWR~F~~~ 57 (58)
T 1dl6_A 11 RVTCPNHPD-AILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSND 57 (58)
T ss_dssp CCSBTTBSS-SCCEECSSSCCEECTTTCCEECCSCCCCCCSCCCSCCC
T ss_pred cccCcCCCC-CceeEeCCCCeEEeCCCCCEEeccccccCCcccccCCC
Confidence 358999998 57999999999999999999999999999999999854
No 14
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=99.71 E-value=4.3e-16 Score=137.18 Aligned_cols=150 Identities=15% Similarity=0.178 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHc--CCCHHH
Q 023713 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENK-PRTVKEFCSVAN--GTTKKE 183 (278)
Q Consensus 107 ~~~~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~gr~~~~~aAAclY~acR~~~~-p~tl~eia~~~~--~v~~~~ 183 (278)
..+.++|.+++..++|+..+.-.|..+++++.....+..++...+++||+|+|||.++. |++++|+..+ . ..+.++
T Consensus 40 ~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i-~~~~~~~~~ 118 (260)
T 2cch_B 40 AILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYI-TDDTYTKKQ 118 (260)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHH-TTSSSCHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHH-HcCCcCHHH
Confidence 45789999999999999999999999999999887777788999999999999999998 9999999875 4 378999
Q ss_pred HHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCH-HHHHHHHHHHHHhh-hcC--CCCChhHHHHHHHHHHH
Q 023713 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTN-QAVKAAQEAVQKSE-DLD--IRLILVFFSLFLVETHI 259 (278)
Q Consensus 184 i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~-~v~~~A~~i~~~~~-~~~--~Gr~P~~iaaA~v~~~~ 259 (278)
|.++.+.|.+.|+.+ +...+|.+|+.+|++.+++++ ++...|+.+++.+. +.. .+.+|..||||+| |+
T Consensus 119 i~~mE~~iL~~L~~~------l~~~tp~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai--~l 190 (260)
T 2cch_B 119 VLRMEHLVLKVLTFD------LAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAF--HL 190 (260)
T ss_dssp HHHHHHHHHHHTTTC------CCCCCHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHH--HH
T ss_pred HHHHHHHHHHHcCCc------cCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHH--HH
Confidence 999999999999987 778899999999999999876 88999999999865 322 6999999999999 99
Q ss_pred HHHHHH
Q 023713 260 QLIVWA 265 (278)
Q Consensus 260 ~~~~~~ 265 (278)
+..+.+
T Consensus 191 A~~~~~ 196 (260)
T 2cch_B 191 ALYTVT 196 (260)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 887654
No 15
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=99.69 E-value=1.4e-15 Score=134.58 Aligned_cols=151 Identities=13% Similarity=0.176 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHc--CCCHHH
Q 023713 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENK-PRTVKEFCSVAN--GTTKKE 183 (278)
Q Consensus 107 ~~~~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~gr~~~~~aAAclY~acR~~~~-p~tl~eia~~~~--~v~~~~ 183 (278)
....++|.+++..+++++.+.-.|..+++++.....+..++...+++||+|+|||.++. |+++.|++.+ . ..+.++
T Consensus 58 ~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~-~~~~~~~~e 136 (271)
T 2w96_A 58 KIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIY-TDNSIRPEE 136 (271)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHH-TTTSSCHHH
T ss_pred HHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH-hcCCCCHHH
Confidence 45788999999999999999999999999999988888889999999999999999998 9999999874 4 378999
Q ss_pred HHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHHH----HHHHHHHHHHhhhcC--CCCChhHHHHHHHHH
Q 023713 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQA----VKAAQEAVQKSEDLD--IRLILVFFSLFLVET 257 (278)
Q Consensus 184 i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v----~~~A~~i~~~~~~~~--~Gr~P~~iaaA~v~~ 257 (278)
|.++.+.|.+.|+.+ +...+|.+|+.+|++.++++++. .+.|+.+++.+.... .+.+|..||||+|
T Consensus 137 I~~mE~~IL~~L~~~------l~~~tp~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai-- 208 (271)
T 2w96_A 137 LLQMELLLVNKLKWN------LAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSV-- 208 (271)
T ss_dssp HHHHHHHHHHHTTTC------CCCCCHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHH--
T ss_pred HHHHHHHHHHHCCCc------cCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHH--
Confidence 999999999999987 77889999999999999999775 356778888765332 5999999999999
Q ss_pred HHHHHHHHH
Q 023713 258 HIQLIVWAF 266 (278)
Q Consensus 258 ~~~~~~~~~ 266 (278)
|++....+.
T Consensus 209 ~lA~~~l~~ 217 (271)
T 2w96_A 209 VAAVQGLNL 217 (271)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhCc
Confidence 999877654
No 16
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=99.63 E-value=8e-15 Score=128.81 Aligned_cols=149 Identities=12% Similarity=0.068 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHc--CCCHHH
Q 023713 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENK-PRTVKEFCSVAN--GTTKKE 183 (278)
Q Consensus 107 ~~~~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~gr~~~~~aAAclY~acR~~~~-p~tl~eia~~~~--~v~~~~ 183 (278)
....++|.+++..++++..+.-.|..+++++.....+++++...+++||+|+|||.++. |.++.|+..+ . ..+.++
T Consensus 52 ~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~-~~~~~~~~~ 130 (257)
T 1g3n_C 52 KLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYA-AADSFSRQE 130 (257)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHH-TTTCSCHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHH-HCCCCCHHH
Confidence 45789999999999999999999999999999988888889999999999999998765 9999999875 4 378999
Q ss_pred HHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHHH----HHHHHHHHHHhhhcC--CCCChhHHHHHHHHH
Q 023713 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQA----VKAAQEAVQKSEDLD--IRLILVFFSLFLVET 257 (278)
Q Consensus 184 i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v----~~~A~~i~~~~~~~~--~Gr~P~~iaaA~v~~ 257 (278)
|.+..+.|.+.|+.+ +...+|.+|+.+|++.++++.+. ...|+.+++.+.... .+.+|..||||+|
T Consensus 131 i~~mE~~iL~~L~~~------l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai-- 202 (257)
T 1g3n_C 131 LIDQEKELLEKLAWR------TEAVLATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGC-- 202 (257)
T ss_dssp HHHHHHHHHHHTTTC------CCCCCHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHH--
T ss_pred HHHHHHHHHHHCCCc------CCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHH--
Confidence 999999999999987 77889999999999999987653 566888888766433 6999999999999
Q ss_pred HHHHHHH
Q 023713 258 HIQLIVW 264 (278)
Q Consensus 258 ~~~~~~~ 264 (278)
|++..+.
T Consensus 203 ~lA~~~l 209 (257)
T 1g3n_C 203 ALLVPAN 209 (257)
T ss_dssp HHHCCGG
T ss_pred HHHHHHh
Confidence 8876544
No 17
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=99.60 E-value=1.9e-14 Score=126.25 Aligned_cols=149 Identities=17% Similarity=0.178 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhcC-CCCCHHHHHHHH-cCCCHHHH
Q 023713 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQEN-KPRTVKEFCSVA-NGTTKKEI 184 (278)
Q Consensus 107 ~~~~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~gr~~~~~aAAclY~acR~~~-~p~tl~eia~~~-~~v~~~~i 184 (278)
....++|.+++..++++..+.-.|..++.++.....+++++...+++||+|+|||.+. .|.++.|+..+. ...+.++|
T Consensus 53 ~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i 132 (254)
T 2f2c_A 53 TILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLEL 132 (254)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHH
Confidence 4578899999999999999999999999999998888899999999999999999976 699999997641 23689999
Q ss_pred HHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHHH----HHHHHHHHHHhhhcC--CCCChhHHHHHHHHHH
Q 023713 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQA----VKAAQEAVQKSEDLD--IRLILVFFSLFLVETH 258 (278)
Q Consensus 185 ~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v----~~~A~~i~~~~~~~~--~Gr~P~~iaaA~v~~~ 258 (278)
.+..+.|.+.|+.+ +...+|.+|+.+|++.++++.+. ...|+.+++.+.... .+.+|..||||+| |
T Consensus 133 ~~mE~~IL~~L~~~------l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai--~ 204 (254)
T 2f2c_A 133 INQEKDILEALKWD------TEAVLATDFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGL--L 204 (254)
T ss_dssp HHHHHHHHHHTTTC------CCCCCGGGSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHH--H
T ss_pred HHHHHHHHHHCCCc------CCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHH--H
Confidence 99999999999987 77889999999999999998653 456788887665422 7999999999999 8
Q ss_pred HHHHH
Q 023713 259 IQLIV 263 (278)
Q Consensus 259 ~~~~~ 263 (278)
++...
T Consensus 205 la~~~ 209 (254)
T 2f2c_A 205 TTIET 209 (254)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 88765
No 18
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=99.58 E-value=8.7e-16 Score=101.15 Aligned_cols=44 Identities=34% Similarity=0.940 Sum_probs=42.0
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCcccccccccccccchhhcc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFA 48 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~e~~id~~~ewr~f~ 48 (278)
..||+||+ ..+++|+.+|++||..||+|++++.||.+||||+|+
T Consensus 6 ~~CP~C~~-~~l~~d~~~gelvC~~CG~v~~e~~id~~~ewr~f~ 49 (50)
T 1pft_A 6 KVCPACES-AELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAFD 49 (50)
T ss_dssp CSCTTTSC-CCEEEETTTTEEEESSSCCBCCCCCCCCCSSSSCCC
T ss_pred EeCcCCCC-cceEEcCCCCeEECcccCCcccccccccCCcccccC
Confidence 57999998 589999999999999999999999999999999997
No 19
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.57 E-value=1.7e-14 Score=121.90 Aligned_cols=90 Identities=27% Similarity=0.391 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHH
Q 023713 108 QAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187 (278)
Q Consensus 108 ~~~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~gr~~~~~aAAclY~acR~~~~p~tl~eia~~~~~v~~~~i~~~ 187 (278)
+...+|.++|+.|+||+.+.+.|..|++.+.+.+...||+|..+||||||+|||..+.|+|++||+.+ .++++.+|++.
T Consensus 107 ~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~-~~vs~~ti~~~ 185 (200)
T 1ais_B 107 KPTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEV-ARVTEVTVRNR 185 (200)
T ss_dssp CGGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHH-HTCCHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHH-hCCCHHHHHHH
Confidence 35679999999999999999999999999999999999999999999999999999999999999996 89999999999
Q ss_pred HHHHHHHhhhh
Q 023713 188 KEFIVKHLEAE 198 (278)
Q Consensus 188 ~~~l~~~L~~~ 198 (278)
|++|.+.|+++
T Consensus 186 ~~~l~~~l~~~ 196 (200)
T 1ais_B 186 YKELVEKLKIK 196 (200)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHcCCC
Confidence 99999999986
No 20
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.55 E-value=1.2e-13 Score=123.08 Aligned_cols=146 Identities=12% Similarity=0.125 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhC-CCCCCCcHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHc--CCCHH
Q 023713 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQ-KPLRGRNQEAIVAACLYIACRQENK-PRTVKEFCSVAN--GTTKK 182 (278)
Q Consensus 107 ~~~~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~-~~~~gr~~~~~aAAclY~acR~~~~-p~tl~eia~~~~--~v~~~ 182 (278)
....++|.+++..++++..+.-.|..++.++... +.+++++...+++||+|+|||.++. |.+++|+..+ . ..+.+
T Consensus 51 ~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i-~~~~~~~~ 129 (283)
T 1w98_B 51 AILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYV-TDGACSGD 129 (283)
T ss_dssp HHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHT-TTTSSCHH
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHH-HcCCCCHH
Confidence 4568899999999999999999999999999886 5778899999999999999999976 8999999875 4 36899
Q ss_pred HHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHH-----------HHHHHHHHHHHhhh-cC-CCCChhH
Q 023713 183 EIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQ-----------AVKAAQEAVQKSED-LD-IRLILVF 249 (278)
Q Consensus 183 ~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~-----------v~~~A~~i~~~~~~-~~-~Gr~P~~ 249 (278)
+|.++.+.|.+.|+.+ +.+.+|.+|+.+|++.++++++ ....+.++++.+.. .. .+.+|..
T Consensus 130 ei~~mE~~IL~~L~~~------l~~~tp~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~ 203 (283)
T 1w98_B 130 EILTMELMIMKALKWR------LSPLTIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGI 203 (283)
T ss_dssp HHHHHHHHHHHHTTTC------CCCCCHHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHH
T ss_pred HHHHHHHHHHHHcCCc------CCCCCHHHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHH
Confidence 9999999999999987 7788999999999998877532 22345567776653 22 6999999
Q ss_pred HHHHHHHHHHHH
Q 023713 250 FSLFLVETHIQL 261 (278)
Q Consensus 250 iaaA~v~~~~~~ 261 (278)
||||+| |++.
T Consensus 204 iAaAai--~la~ 213 (283)
T 1w98_B 204 LAASAL--YHFS 213 (283)
T ss_dssp HHHHHH--HHTS
T ss_pred HHHHHH--HHHH
Confidence 999999 8764
No 21
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.52 E-value=3e-13 Score=121.73 Aligned_cols=150 Identities=11% Similarity=0.126 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHcC--CCHHH
Q 023713 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQE-NKPRTVKEFCSVANG--TTKKE 183 (278)
Q Consensus 107 ~~~~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~gr~~~~~aAAclY~acR~~-~~p~tl~eia~~~~~--v~~~~ 183 (278)
....++|.+++..++|+..+.-.|..+++++.....++......++++|+|+|||.+ ..|.++.|+..+ .+ .+..+
T Consensus 72 ~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~-~~~~~~~~~ 150 (306)
T 3g33_B 72 KMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIY-TDHAVSPRQ 150 (306)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHH-TTTSSCHHH
T ss_pred HHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHH-hccCccHHH
Confidence 467899999999999999999999999999999888888899999999999999985 467899999874 43 68999
Q ss_pred HHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHH----HHHHHHHHHHHhhhcC--CCCChhHHHHHHHHH
Q 023713 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQ----AVKAAQEAVQKSEDLD--IRLILVFFSLFLVET 257 (278)
Q Consensus 184 i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~----v~~~A~~i~~~~~~~~--~Gr~P~~iaaA~v~~ 257 (278)
|.+..+.|.+.|+.+ +...+|.+|+.+|+..++++.+ +.+.|+.+++.+.... .+..|..||||+|
T Consensus 151 i~~mE~~IL~~L~f~------l~~~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai-- 222 (306)
T 3g33_B 151 LRDWEVLVLGKLKWD------LAAVIAHDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSI-- 222 (306)
T ss_dssp HHHHHHHHHHHTTTC------CCCCCGGGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHH--
T ss_pred HHHHHHHHHHHcCCc------cCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHH--
Confidence 999999999999987 7788999999999999998744 4567778888665433 7999999999999
Q ss_pred HHHHHHHH
Q 023713 258 HIQLIVWA 265 (278)
Q Consensus 258 ~~~~~~~~ 265 (278)
|+|....+
T Consensus 223 ~lA~~~l~ 230 (306)
T 3g33_B 223 GAAVQGLG 230 (306)
T ss_dssp HHHHHTCC
T ss_pred HHHHHHhc
Confidence 88876543
No 22
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.39 E-value=2.7e-12 Score=108.99 Aligned_cols=90 Identities=21% Similarity=0.281 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHH
Q 023713 108 QAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187 (278)
Q Consensus 108 ~~~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~gr~~~~~aAAclY~acR~~~~p~tl~eia~~~~~v~~~~i~~~ 187 (278)
+...+|.++++.|++|+.+.+.|..+++.+.+.++..|++|..+||||||+||+..+.|++++||+++ +++++.+|+++
T Consensus 101 ~p~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~~~~~i~~~-~~v~~~tI~~~ 179 (207)
T 1c9b_A 101 TTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDI-AGVADVTIRQS 179 (207)
T ss_dssp CTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCCHHHHHHH-HTCCHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHH-hCCCHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999996 89999999999
Q ss_pred HHHHHHHhhhh
Q 023713 188 KEFIVKHLEAE 198 (278)
Q Consensus 188 ~~~l~~~L~~~ 198 (278)
|+.|.+.++..
T Consensus 180 ~~~l~~~l~~~ 190 (207)
T 1c9b_A 180 YRLIYPRAPDL 190 (207)
T ss_dssp HHHHGGGHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999875
No 23
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.17 E-value=2.6e-12 Score=117.31 Aligned_cols=89 Identities=19% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHH
Q 023713 108 QAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187 (278)
Q Consensus 108 ~~~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~gr~~~~~aAAclY~acR~~~~p~tl~eia~~~~~v~~~~i~~~ 187 (278)
+...+|.++|+.|+|+..+...|.+|.+++.+.+++.||+|.++||||||+|++.++.++|++||+++ ++|++.+|++.
T Consensus 234 ~p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~~~t~~eIa~v-~~Vse~TIr~r 312 (345)
T 4bbr_M 234 QNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQT-LQVTEGTIKSG 312 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHhCCCCCHHHHHHH-HCCCHHHHHHH
Confidence 56679999999999999999999999999999999999999999999999999999999999999996 99999999999
Q ss_pred HHHHHHHhhh
Q 023713 188 KEFIVKHLEA 197 (278)
Q Consensus 188 ~~~l~~~L~~ 197 (278)
|++|.+.++.
T Consensus 313 ykel~~~~~~ 322 (345)
T 4bbr_M 313 YKILYEHRDK 322 (345)
T ss_dssp ----------
T ss_pred HHHHHHHHHh
Confidence 9999998874
No 24
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=99.16 E-value=1.7e-09 Score=94.51 Aligned_cols=147 Identities=10% Similarity=0.030 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhcC-CCCCHHHHHHHH-cCCCHHHH
Q 023713 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQEN-KPRTVKEFCSVA-NGTTKKEI 184 (278)
Q Consensus 107 ~~~~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~gr~~~~~aAAclY~acR~~~-~p~tl~eia~~~-~~v~~~~i 184 (278)
....++|-+++..++|+..+.-.|..++.+......++......++++|+|+|++.+. .|.++.++.... ...+..+|
T Consensus 50 ~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i 129 (252)
T 1f5q_B 50 KVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKL 129 (252)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHH
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHH
Confidence 3568899999999999999999999999999887777777889999999999999766 488999987642 24689999
Q ss_pred HHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHH----HHHHHHHHHHHhhhcC--CCCChhHHHHHHHHHH
Q 023713 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQ----AVKAAQEAVQKSEDLD--IRLILVFFSLFLVETH 258 (278)
Q Consensus 185 ~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~----v~~~A~~i~~~~~~~~--~Gr~P~~iaaA~v~~~ 258 (278)
.+..+.|.+.|+.+ +..+.|.+|+.+|...++.+.+ +...|..+++.+.-.- ..-+|+.||||++ +
T Consensus 130 ~~mE~~IL~~L~w~------l~~pTp~~FL~~~l~~~~~~~~~~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~--~ 201 (252)
T 1f5q_B 130 LTLEVKSLDTLSWV------ADRCLSTDLICYILHIMHAPREDYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACM--H 201 (252)
T ss_dssp HHHHHHHHHHTTTC------CCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHH--H
T ss_pred HHHHHHHHHHCCCc------cCCCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHH--H
Confidence 99999999999987 7788999999999999999865 3456677766654322 5889999999997 4
Q ss_pred HHH
Q 023713 259 IQL 261 (278)
Q Consensus 259 ~~~ 261 (278)
.++
T Consensus 202 ~~l 204 (252)
T 1f5q_B 202 LTM 204 (252)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 25
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=98.99 E-value=4.3e-11 Score=109.32 Aligned_cols=88 Identities=19% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHH
Q 023713 108 QAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187 (278)
Q Consensus 108 ~~~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~gr~~~~~aAAclY~acR~~~~p~tl~eia~~~~~v~~~~i~~~ 187 (278)
+...+|.++|+.|+|+..+...|..|.+.+.+.++..||+|..+||||||+|++..+.++|.+||+.+ ++|++.+|+..
T Consensus 234 ~p~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~-~~Vse~TIr~~ 312 (345)
T 3k7a_M 234 QNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQT-LQVTEGTIKSG 312 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH-HCCCHHHHHHH
Confidence 34677889999999999999999999999999999999999999999999999999999999999996 99999999999
Q ss_pred HHHHHHHhh
Q 023713 188 KEFIVKHLE 196 (278)
Q Consensus 188 ~~~l~~~L~ 196 (278)
|++|.+.+.
T Consensus 313 ykel~~~~~ 321 (345)
T 3k7a_M 313 YKILYEHRD 321 (345)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 999998775
No 26
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=97.82 E-value=3.6e-05 Score=63.68 Aligned_cols=114 Identities=20% Similarity=0.335 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCC---CcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHH
Q 023713 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRG---RNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIG 185 (278)
Q Consensus 109 ~~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~g---r~~~~~aAAclY~acR~~~~p~tl~eia~~~~~v~~~~i~ 185 (278)
....|.++..+-++|+.+.+.|.++.+.++...--+| .++..+||||+.+|..+.+.|+++.|+-. ++-+..+|.
T Consensus 15 M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~PiplaE~r~--lD~sL~Dve 92 (260)
T 3h4c_A 15 MLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPLAEVRC--LDSSLGDVE 92 (260)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHH--HCTTCCCHH
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccHHHHHH--HhhhhhHHH
Confidence 3566788888999999999999999999876443333 36779999999999999999999999955 344444555
Q ss_pred HHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCH
Q 023713 186 RAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTN 225 (278)
Q Consensus 186 ~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~ 225 (278)
-.-.+|.+.+++.+.... +...=...+|..|+.+|+|.-
T Consensus 93 lrr~Eiv~~l~l~e~e~r-l~~~~~~NLl~~Yv~kL~Lq~ 131 (260)
T 3h4c_A 93 LRRADIVRELHLEDSERR-LRDTFADNLLVKYILKLGLQV 131 (260)
T ss_dssp HHHHHHHHHTTCHHHHHH-HHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHccCCHHHHH-HHHHhhhhHHHHHHHHhccch
Confidence 555578888876531000 111113467778888888873
No 27
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=97.66 E-value=8.4e-05 Score=63.72 Aligned_cols=87 Identities=11% Similarity=0.022 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHH
Q 023713 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAK 188 (278)
Q Consensus 109 ~~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~gr~~~~~aAAclY~acR~~~~p~tl~eia~~~~~v~~~~i~~~~ 188 (278)
...+|.+++..+++++.+...|..+..........-+++|..+||||||+|++..+.+.+ .+.... .+++..+|..++
T Consensus 134 P~~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~-~~~~~~-~~~~~~~i~~~~ 211 (235)
T 1zp2_A 134 PYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDENTIP-KLLDLI-KSTDAFKVILCV 211 (235)
T ss_dssp THHHHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTSCTTHHH-HHHHHC-CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHHhcCCCCC-CCcchh-hcCCHHHHHHHH
Confidence 467889999999999999999999999998777778999999999999999999887543 344443 478899999999
Q ss_pred HHHHHHhhh
Q 023713 189 EFIVKHLEA 197 (278)
Q Consensus 189 ~~l~~~L~~ 197 (278)
+.|.+.+..
T Consensus 212 ~~i~~ly~~ 220 (235)
T 1zp2_A 212 QRIISIYYF 220 (235)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHHhh
Confidence 999887654
No 28
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=97.64 E-value=0.00014 Score=63.31 Aligned_cols=89 Identities=9% Similarity=-0.047 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHh-hCCCCCCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHH
Q 023713 108 QAFKSISAMSDRLGLVT-TIKDRANEIYKKVE-DQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIG 185 (278)
Q Consensus 108 ~~~~~I~~i~~~L~Lp~-~v~e~A~~i~k~~~-~~~~~~gr~~~~~aAAclY~acR~~~~p~tl~eia~~~~~v~~~~i~ 185 (278)
...++|.+++..+++++ .+...|..+..... +...+-+.+|..+||||+|+|++..+.|....+++.+ +|++..+|.
T Consensus 138 tp~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~~~w~~~l~~~-~g~~~~~i~ 216 (260)
T 2cch_B 138 TVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQSWPESLIRK-TGYTLESLK 216 (260)
T ss_dssp CHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHSCCSCHHHHHH-HCCCHHHHH
T ss_pred CHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCCCcchHHHHHH-hCcCHHHHH
Confidence 35789999999999986 78888888887754 3332567899999999999999988888888889885 899999999
Q ss_pred HHHHHHHHHhhh
Q 023713 186 RAKEFIVKHLEA 197 (278)
Q Consensus 186 ~~~~~l~~~L~~ 197 (278)
.+++.|.+.+..
T Consensus 217 ~~~~~l~~~~~~ 228 (260)
T 2cch_B 217 PCLMDLHQTYLK 228 (260)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999987753
No 29
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=97.58 E-value=8.6e-05 Score=65.04 Aligned_cols=87 Identities=8% Similarity=-0.028 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHH
Q 023713 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAK 188 (278)
Q Consensus 109 ~~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~gr~~~~~aAAclY~acR~~~~p~tl~eia~~~~~v~~~~i~~~~ 188 (278)
..++|.+++..++++..+...|..+.........+-+.+|..+||||||+|++..+.+....++... +|++..+|..++
T Consensus 138 p~~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~~w~~~l~~~-tg~~~~~l~~~~ 216 (269)
T 2b9r_A 138 PLHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNGEWTPTLQHY-LSYTEESLLPVM 216 (269)
T ss_dssp HHHHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCCCSCTTHHHH-SCCCSSTTTTHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCCCCCHHHHHH-HCCCHHHHHHHH
Confidence 5678999999999999999999999888776666678999999999999999999888777888885 899999999999
Q ss_pred HHHHHHhh
Q 023713 189 EFIVKHLE 196 (278)
Q Consensus 189 ~~l~~~L~ 196 (278)
+.|.+.+.
T Consensus 217 ~~l~~~~~ 224 (269)
T 2b9r_A 217 QHLAKNVV 224 (269)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987664
No 30
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=97.45 E-value=0.00059 Score=60.22 Aligned_cols=86 Identities=16% Similarity=0.172 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHH
Q 023713 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAK 188 (278)
Q Consensus 109 ~~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~gr~~~~~aAAclY~acR~~~~p~tl~eia~~~~~v~~~~i~~~~ 188 (278)
..++|.+++..|+++..+...|..+..........-+..|..+||||||+|++..+.+. ...... ++++..+|..++
T Consensus 157 P~~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~~~--~~W~~~-~~~~~~~l~~~~ 233 (285)
T 3rgf_B 157 PYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDA--RQWFAE-LSVDMEKILEII 233 (285)
T ss_dssp SHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTCCC--HHHHHT-SCSCHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCCCh--hhHHHH-HCCCHHHHHHHH
Confidence 46788999999999999999999999988766666678999999999999999988754 455564 899999999999
Q ss_pred HHHHHHhhh
Q 023713 189 EFIVKHLEA 197 (278)
Q Consensus 189 ~~l~~~L~~ 197 (278)
+.|.+....
T Consensus 234 ~~il~ly~~ 242 (285)
T 3rgf_B 234 RVILKLYEQ 242 (285)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999887764
No 31
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=97.37 E-value=0.00051 Score=60.09 Aligned_cols=89 Identities=13% Similarity=0.074 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhcCCCHHHH----HHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhcCC---------CCCHHHHHHH
Q 023713 109 AFKSISAMSDRLGLVTTIK----DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENK---------PRTVKEFCSV 175 (278)
Q Consensus 109 ~~~~I~~i~~~L~Lp~~v~----e~A~~i~k~~~~~~~~~gr~~~~~aAAclY~acR~~~~---------p~tl~eia~~ 175 (278)
.+++|..+...++++.... ..|..+...+.....+-+.+|..+||||||+|++..+. +.+..+++.+
T Consensus 157 p~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~ 236 (271)
T 2w96_A 157 PHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRV 236 (271)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHH
Confidence 5678899999999987653 45666666654333345789999999999999986543 1246788885
Q ss_pred HcCCCHHHHHHHHHHHHHHhhhh
Q 023713 176 ANGTTKKEIGRAKEFIVKHLEAE 198 (278)
Q Consensus 176 ~~~v~~~~i~~~~~~l~~~L~~~ 198 (278)
+|++..+|..+++.|.+.++..
T Consensus 237 -~~v~~~~l~~c~~~i~~l~~~~ 258 (271)
T 2w96_A 237 -IKCDPDCLRACQEQIEALLESS 258 (271)
T ss_dssp -HTSCHHHHHHHHHHHHHHHTTT
T ss_pred -HCcCHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999998765
No 32
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=97.35 E-value=0.00051 Score=59.47 Aligned_cols=90 Identities=10% Similarity=-0.024 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhcCCCH----HHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhcCCCCCHHHHH-------HH-
Q 023713 108 QAFKSISAMSDRLGLVT----TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC-------SV- 175 (278)
Q Consensus 108 ~~~~~I~~i~~~L~Lp~----~v~e~A~~i~k~~~~~~~~~gr~~~~~aAAclY~acR~~~~p~tl~eia-------~~- 175 (278)
....+|.+++..|+.+. .+...|..+..........-+.+|..+||||||+|++..+.+++..+.. ..
T Consensus 150 ~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~ 229 (258)
T 2i53_A 150 HPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQF 229 (258)
T ss_dssp CHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGT
T ss_pred ChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHh
Confidence 35678999999999987 5788888888888777777789999999999999999998876543221 21
Q ss_pred HcCCCHHHHHHHHHHHHHHhhh
Q 023713 176 ANGTTKKEIGRAKEFIVKHLEA 197 (278)
Q Consensus 176 ~~~v~~~~i~~~~~~l~~~L~~ 197 (278)
..+++..+|...++.|.+.+..
T Consensus 230 ~~~~~~~~l~~~~~~il~ly~~ 251 (258)
T 2i53_A 230 VQDVPVDVLEDICHQILDLYSQ 251 (258)
T ss_dssp SSSCCHHHHHHHHHHHHTTTSS
T ss_pred ccCCCHHHHHHHHHHHHHHHhc
Confidence 1489999999999999887754
No 33
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=97.27 E-value=0.0012 Score=57.02 Aligned_cols=89 Identities=10% Similarity=0.100 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh-hCCCCCCCcHHHHHHHHHHHHHHhcCCCCCHH----HHHHH-HcCCCH
Q 023713 108 QAFKSISAMSDRLGLVTTIKDRANEIYKKVE-DQKPLRGRNQEAIVAACLYIACRQENKPRTVK----EFCSV-ANGTTK 181 (278)
Q Consensus 108 ~~~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~-~~~~~~gr~~~~~aAAclY~acR~~~~p~tl~----eia~~-~~~v~~ 181 (278)
..+.+|.+++..++.+..+...|..+..... .....-+..|..+||||||+|++..+.+++.. ...+. ..+++.
T Consensus 145 ~P~~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~ 224 (257)
T 2ivx_A 145 HPHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTL 224 (257)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCH
T ss_pred CcHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCH
Confidence 4577899999999999999999999987765 45556678999999999999999988665432 12221 137899
Q ss_pred HHHHHHHHHHHHHhh
Q 023713 182 KEIGRAKEFIVKHLE 196 (278)
Q Consensus 182 ~~i~~~~~~l~~~L~ 196 (278)
.+|...++.|.+.+.
T Consensus 225 ~~l~~~~~~i~~~~~ 239 (257)
T 2ivx_A 225 ELLDELTHEFLQILE 239 (257)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988775
No 34
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=97.16 E-value=0.0016 Score=56.31 Aligned_cols=86 Identities=12% Similarity=0.133 Sum_probs=66.7
Q ss_pred HHHHHHHHHhcCCCHHH----HHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhc-CCCCC----HHHHHHHHcCCC
Q 023713 110 FKSISAMSDRLGLVTTI----KDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQE-NKPRT----VKEFCSVANGTT 180 (278)
Q Consensus 110 ~~~I~~i~~~L~Lp~~v----~e~A~~i~k~~~~~~~~~gr~~~~~aAAclY~acR~~-~~p~t----l~eia~~~~~v~ 180 (278)
.+++..+...++++... ...|..+.....-...+-+.+|..+||||+|+|.+.. +.|.+ ..+++.+ +|++
T Consensus 153 ~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~-tg~~ 231 (254)
T 2f2c_A 153 TDFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSI-LNFS 231 (254)
T ss_dssp GGSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHH-HTCC
T ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH-HCcC
Confidence 46788889999988643 3456666665544334567899999999999999986 44555 7788885 8999
Q ss_pred HHHHHHHHHHHHHHhh
Q 023713 181 KKEIGRAKEFIVKHLE 196 (278)
Q Consensus 181 ~~~i~~~~~~l~~~L~ 196 (278)
..+|..+++.|.+.+.
T Consensus 232 ~~~l~~c~~~i~~~~~ 247 (254)
T 2f2c_A 232 TNTVRTVKDQVSEAFS 247 (254)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988764
No 35
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=97.10 E-value=0.0026 Score=46.51 Aligned_cols=80 Identities=16% Similarity=0.175 Sum_probs=64.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCC------CcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHH
Q 023713 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRG------RNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGR 186 (278)
Q Consensus 113 I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~g------r~~~~~aAAclY~acR~~~~p~tl~eia~~~~~v~~~~i~~ 186 (278)
|+++|-.|++++ +++.|.+++.+.... +..+ .+.-..+||++|.+||..+..+.-..+.+ +.++.+.++.+
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~-l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK~KL~~-~s~lk~~~f~~ 82 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESS-LPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMVA-TSGVKKAIFDR 82 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTT-SCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCCHHHHHH-TTCBCHHHHHH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHH-hHHHhhccccccccHHHHHHHHHHHHHHccCCCHHHHHH-HHCCCHHHHHH
Confidence 788999999998 888888888877533 2111 23457899999999999999999999988 59999999998
Q ss_pred HHHHHHHHh
Q 023713 187 AKEFIVKHL 195 (278)
Q Consensus 187 ~~~~l~~~L 195 (278)
....+.+..
T Consensus 83 l~~~~e~~~ 91 (95)
T 3m03_A 83 LCKQLEKIG 91 (95)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888876654
No 36
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=97.06 E-value=0.0018 Score=56.07 Aligned_cols=88 Identities=16% Similarity=0.028 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhcCCCHHH----HHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhcCC------CCCHHHHHHHHcC
Q 023713 109 AFKSISAMSDRLGLVTTI----KDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENK------PRTVKEFCSVANG 178 (278)
Q Consensus 109 ~~~~I~~i~~~L~Lp~~v----~e~A~~i~k~~~~~~~~~gr~~~~~aAAclY~acR~~~~------p~tl~eia~~~~~ 178 (278)
..++|..++..++++... ...|..+.....-...+-+.+|..+||||+|+|.+..+. +....+++.. +|
T Consensus 151 p~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~-t~ 229 (257)
T 1g3n_C 151 ATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASI-LG 229 (257)
T ss_dssp HHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHH-HT
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHH-HC
Confidence 577899999999987543 455776766655444456789999999999999988875 3456788875 89
Q ss_pred CCHHHHHHHHHHHHHHhhh
Q 023713 179 TTKKEIGRAKEFIVKHLEA 197 (278)
Q Consensus 179 v~~~~i~~~~~~l~~~L~~ 197 (278)
++..+|..+++.|.+.+.-
T Consensus 230 ~~~~~l~~c~~~i~~l~~~ 248 (257)
T 1g3n_C 230 CDVSVLQAAVEQILTSVSD 248 (257)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHH
Confidence 9999999999999988753
No 37
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=96.73 E-value=0.0012 Score=45.74 Aligned_cols=30 Identities=20% Similarity=0.493 Sum_probs=26.5
Q ss_pred CCCCCCCCCCCCceeEeCCCCceEcCCCcccc
Q 023713 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVL 33 (278)
Q Consensus 2 ~~~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl 33 (278)
+...||.|++ .+.+|..+|+++|..||.+.
T Consensus 7 ~iL~CP~ck~--~L~~~~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 7 DILVCPVCKG--RLEFQRAQAELVCNADRLAF 36 (70)
T ss_dssp CCCBCTTTCC--BEEEETTTTEEEETTTTEEE
T ss_pred hheECCCCCC--cCEEeCCCCEEEcCCCCcee
Confidence 4468999997 58999999999999999986
No 38
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=96.64 E-value=0.0014 Score=44.92 Aligned_cols=29 Identities=14% Similarity=0.068 Sum_probs=25.9
Q ss_pred CCCCCCCCCCCceeEeCCCCceEcCCCcccc
Q 023713 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVL 33 (278)
Q Consensus 3 ~~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl 33 (278)
...||.|++ .+.+|..+|+++|..||.+.
T Consensus 10 iL~CP~ck~--~L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 10 VLACPKDKG--PLRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp CCBCTTTCC--BCEEETTTTEEEETTTTEEE
T ss_pred HhCCCCCCC--cCeEeCCCCEEEcCCCCccc
Confidence 467999997 58999999999999999886
No 39
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=96.64 E-value=0.0013 Score=45.15 Aligned_cols=30 Identities=10% Similarity=0.159 Sum_probs=26.4
Q ss_pred CCCCCCCCCCCCceeEeCCCCceEcCCCcccc
Q 023713 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVL 33 (278)
Q Consensus 2 ~~~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl 33 (278)
+...||.|++ .+.++...|+++|..||.+.
T Consensus 7 ~iL~CP~ck~--~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 7 DILVCPVTKG--RLEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp CCCBCSSSCC--BCEEETTTTEEEETTTTEEE
T ss_pred hheECCCCCC--cCeEeCCCCEEEcCCCCcEe
Confidence 4468999997 58899999999999999986
No 40
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=96.60 E-value=0.00098 Score=45.01 Aligned_cols=30 Identities=33% Similarity=0.797 Sum_probs=27.9
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCccccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~ 34 (278)
.+||.|+. ..+||+.++-.+.|..||.||-
T Consensus 8 VKCp~C~n-iq~VFShA~tvV~C~~Cg~~L~ 37 (66)
T 1qxf_A 8 VKCPDCEH-EQVIFDHPSTIVKCIICGRTVA 37 (66)
T ss_dssp EECTTTCC-EEEEESSCSSCEECSSSCCEEE
T ss_pred EECCCCCC-ceEEEecCceEEEcccCCCEEe
Confidence 47999998 6899999999999999999996
No 41
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=96.52 E-value=0.001 Score=47.63 Aligned_cols=31 Identities=23% Similarity=0.438 Sum_probs=27.2
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCccccccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAY 36 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~e~ 36 (278)
..||.||. +.++++..|.+.|..||.++...
T Consensus 28 y~Cp~CG~--~~v~r~atGiW~C~~Cg~~~agg 58 (83)
T 1vq8_Z 28 HACPNCGE--DRVDRQGTGIWQCSYCDYKFTGG 58 (83)
T ss_dssp EECSSSCC--EEEEEEETTEEEETTTCCEEECC
T ss_pred CcCCCCCC--cceeccCCCeEECCCCCCEecCC
Confidence 57999997 57999999999999999997644
No 42
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.49 E-value=0.0013 Score=44.15 Aligned_cols=31 Identities=35% Similarity=0.754 Sum_probs=28.2
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCcccccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEA 35 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~e 35 (278)
.+||.|+. ..+||++.+-.+.|..||.+|-+
T Consensus 16 VkCp~C~~-~q~VFSha~t~V~C~~Cgt~L~~ 46 (63)
T 3j20_W 16 VKCIDCGN-EQIVFSHPATKVRCLICGATLVE 46 (63)
T ss_dssp EECSSSCC-EEEEESSCSSCEECSSSCCEEEE
T ss_pred EECCCCCC-eeEEEecCCeEEEccCcCCEEec
Confidence 47999998 68999999999999999999963
No 43
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=96.47 E-value=0.0014 Score=45.26 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=25.7
Q ss_pred CCCCCCCCCCCceeEeCCCCceEcCCCcccc
Q 023713 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVL 33 (278)
Q Consensus 3 ~~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl 33 (278)
...||.|++ .+.++..+|+++|..||.+.
T Consensus 8 iL~CP~ck~--~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 8 ILACPICKG--PLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp TCCCTTTCC--CCEECTTSSEEEETTTTEEE
T ss_pred heeCCCCCC--cCeEeCCCCEEEcCCCCcEe
Confidence 468999997 48889899999999999986
No 44
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=96.42 E-value=0.0018 Score=44.54 Aligned_cols=28 Identities=36% Similarity=0.659 Sum_probs=25.3
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCcccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVL 33 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl 33 (278)
..||.|++ .+.++..+|.++|..||.+.
T Consensus 9 L~CP~ck~--~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 9 LVCPLCKG--PLVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp CBCTTTCC--BCEEETTTTEEEETTTTEEE
T ss_pred eECCCCCC--cCeEeCCCCEEEcCCCCcEe
Confidence 57999997 58899999999999999986
No 45
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=96.38 E-value=0.0027 Score=57.82 Aligned_cols=89 Identities=9% Similarity=0.085 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHh-hCCCCCCCcHHHHHHHHHHHHHHhcCCCCCHH----HHHHH-HcCCCHH
Q 023713 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVE-DQKPLRGRNQEAIVAACLYIACRQENKPRTVK----EFCSV-ANGTTKK 182 (278)
Q Consensus 109 ~~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~-~~~~~~gr~~~~~aAAclY~acR~~~~p~tl~----eia~~-~~~v~~~ 182 (278)
.+.+|.+++..++++..+...|..+..... ...+.-+..|..+||||||+|++..+.+++.. ..... ..+++..
T Consensus 153 P~~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~ 232 (358)
T 2pk2_A 153 PHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLE 232 (358)
T ss_dssp TTHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHH
Confidence 456888999999999999999999988776 44555678999999999999999988655432 12221 1368999
Q ss_pred HHHHHHHHHHHHhhh
Q 023713 183 EIGRAKEFIVKHLEA 197 (278)
Q Consensus 183 ~i~~~~~~l~~~L~~ 197 (278)
+|...++.|.+.+.-
T Consensus 233 ~l~~i~~~il~~y~~ 247 (358)
T 2pk2_A 233 LLDELTHEFLQILEK 247 (358)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999987753
No 46
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=96.24 E-value=0.015 Score=51.72 Aligned_cols=87 Identities=14% Similarity=0.125 Sum_probs=64.2
Q ss_pred HHHHHHHHHhcCCCHH----HHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhcCCCCC-----HHHHHHHHcCCC
Q 023713 110 FKSISAMSDRLGLVTT----IKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT-----VKEFCSVANGTT 180 (278)
Q Consensus 110 ~~~I~~i~~~L~Lp~~----v~e~A~~i~k~~~~~~~~~gr~~~~~aAAclY~acR~~~~p~t-----l~eia~~~~~v~ 180 (278)
+++|..+...++++.. +...|..+.....-...+-+.+|..+||||||+|.+..+.... ..++..+ +|++
T Consensus 172 ~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~-tg~~ 250 (306)
T 3g33_B 172 HDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGI-TGTE 250 (306)
T ss_dssp GGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHH-HTCC
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHH-HCCC
Confidence 4578888888888743 4456666666654444455788999999999999997774322 2566674 8999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 023713 181 KKEIGRAKEFIVKHLEA 197 (278)
Q Consensus 181 ~~~i~~~~~~l~~~L~~ 197 (278)
..+|..+++.|.+.+.-
T Consensus 251 ~~~l~~c~~~I~~l~~~ 267 (306)
T 3g33_B 251 VDCLRACQEQIEAALRE 267 (306)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988864
No 47
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=96.18 E-value=0.0021 Score=45.22 Aligned_cols=31 Identities=26% Similarity=0.769 Sum_probs=28.1
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCcccccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEA 35 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~e 35 (278)
..||.|+. ..+||++++-.+.|..||.||-+
T Consensus 33 VkCp~C~n-~q~VFShA~t~V~C~~Cg~~L~~ 63 (81)
T 2xzm_6 33 VKCAQCQN-IQMIFSNAQSTIICEKCSAILCK 63 (81)
T ss_dssp EECSSSCC-EEEEETTCSSCEECSSSCCEEEE
T ss_pred eECCCCCC-eeEEEecCccEEEccCCCCEEee
Confidence 47999998 68999999999999999999963
No 48
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=96.10 E-value=0.016 Score=52.29 Aligned_cols=71 Identities=14% Similarity=0.250 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHhh--CCCCCCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 023713 105 NLIQAFKSISAMSDRLGLVT-TIKDRANEIYKKVED--QKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175 (278)
Q Consensus 105 ~l~~~~~~I~~i~~~L~Lp~-~v~e~A~~i~k~~~~--~~~~~gr~~~~~aAAclY~acR~~~~p~tl~eia~~ 175 (278)
.+.-|..+|..+|+.|+++. .+.+.+..+|..+.. -.++++|..+.+.-+|+|..||..+...|++||-..
T Consensus 214 vy~La~~Rl~~LC~~L~~~~~~~~~~iWt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~tF~~Ii~~ 287 (347)
T 2r7g_A 214 VYRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTA 287 (347)
T ss_dssp HHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhChHhhcCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 34557889999999998875 577888888877654 357899999999999999999999999999999764
No 49
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=96.10 E-value=0.0023 Score=45.04 Aligned_cols=31 Identities=26% Similarity=0.654 Sum_probs=28.2
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCcccccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEA 35 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~e 35 (278)
..||.|+. ..+||++.+-.+.|..||.||-+
T Consensus 35 VkCp~C~~-~q~VFSha~t~V~C~~Cg~~L~~ 65 (82)
T 3u5c_b 35 VKCPGCLN-ITTVFSHAQTAVTCESCSTILCT 65 (82)
T ss_dssp EECTTSCS-CEEEESBCSSCCCCSSSCCCCEE
T ss_pred EECCCCCC-eeEEEecCCeEEEccccCCEEec
Confidence 46999998 68999999999999999999963
No 50
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=96.07 E-value=0.016 Score=53.35 Aligned_cols=70 Identities=14% Similarity=0.275 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHhhC--CCCCCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 023713 106 LIQAFKSISAMSDRLGLVT-TIKDRANEIYKKVEDQ--KPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175 (278)
Q Consensus 106 l~~~~~~I~~i~~~L~Lp~-~v~e~A~~i~k~~~~~--~~~~gr~~~~~aAAclY~acR~~~~p~tl~eia~~ 175 (278)
..-|..+|+.+|++|++++ .+.+....+|+..... .++++|..+.++-+|+|..||..+..++++||-..
T Consensus 279 y~LAa~Rl~~LC~~L~~~~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~Ii~~ 351 (411)
T 4ell_A 279 YRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTA 351 (411)
T ss_dssp HHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCCCHHHHHHH
Confidence 3558889999999999875 6778888888776543 57899999999999999999999999999999763
No 51
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=95.87 E-value=0.0031 Score=44.85 Aligned_cols=31 Identities=32% Similarity=0.630 Sum_probs=28.3
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCcccccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEA 35 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~e 35 (278)
..||.|+. ..+||++.+-.+.|..||.||-+
T Consensus 37 VkCp~C~~-~~~VFShA~t~V~C~~CgtvL~~ 67 (86)
T 3iz6_X 37 VKCQGCFN-ITTVFSHSQTVVVCPGCQTVLCQ 67 (86)
T ss_dssp EECTTTCC-EEEEETTCSSCCCCSSSCCCCSC
T ss_pred EECCCCCC-eeEEEecCCcEEEccCCCCEeec
Confidence 47999998 68999999999999999999963
No 52
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=95.57 E-value=0.041 Score=53.53 Aligned_cols=70 Identities=14% Similarity=0.266 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhhC--CCCCCCcHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 023713 105 NLIQAFKSISAMSDRLGLV-TTIKDRANEIYKKVEDQ--KPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174 (278)
Q Consensus 105 ~l~~~~~~I~~i~~~L~Lp-~~v~e~A~~i~k~~~~~--~~~~gr~~~~~aAAclY~acR~~~~p~tl~eia~ 174 (278)
...-|..+|+.+|+.|+++ +.+.+.+..+|+..... .++++|..+.++-+|+|..||..+..++++||-.
T Consensus 523 vy~LAa~Rl~~LC~~L~~~~~~i~~~IWt~fe~~l~~~t~L~~dRHLDQiilCsiY~icKv~~~~ltFk~Ii~ 595 (656)
T 4elj_A 523 VYRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVT 595 (656)
T ss_dssp HHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHHHHHHHhccCCcCHHHHHH
Confidence 3455889999999999887 46888888888876553 5789999999999999999999999999999976
No 53
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=95.39 E-value=0.075 Score=47.07 Aligned_cols=71 Identities=15% Similarity=0.277 Sum_probs=52.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhC-C---CCCCCcHHHHHHHHHHHHHH-hcCCCCCHHHHHHHHcCCCHHHH
Q 023713 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQ-K---PLRGRNQEAIVAACLYIACR-QENKPRTVKEFCSVANGTTKKEI 184 (278)
Q Consensus 112 ~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~-~---~~~gr~~~~~aAAclY~acR-~~~~p~tl~eia~~~~~v~~~~i 184 (278)
.-..+|..|+|++.+.++|..+|+.+... + .+.+. .+..-.||||+||. .++..+||-.|... .+++..+.
T Consensus 5 rF~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~-~~~~w~acLY~a~~~~~~n~vsLt~LLr~-~~lsi~~F 80 (304)
T 2qdj_A 5 DFTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQK-KKELWGICIFIAAVDLDEMSFTFTELQKN-IEISVHKF 80 (304)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHC----------C-HHHHHHHHHHHHHHHHTCCCSCHHHHHHH-HTCCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccc-hHHHHHHhHHHHhhccCCCcCcHHHHHHH-cCCCHHHH
Confidence 45678999999999999999999998774 2 23333 44555556999996 45677999999884 78887665
No 54
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=95.30 E-value=0.0096 Score=38.26 Aligned_cols=28 Identities=18% Similarity=0.563 Sum_probs=21.4
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCcccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVL 33 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl 33 (278)
..||.||+ ..+.. +.....+|..||.+.
T Consensus 20 k~CP~CG~-~~fm~-~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 20 KFCPRCGP-GVFMA-DHGDRWACGKCGYTE 47 (50)
T ss_dssp EECSSSCS-SCEEE-ECSSEEECSSSCCEE
T ss_pred ccCCCCCC-ceEEe-cCCCeEECCCCCCEE
Confidence 56999998 44444 446899999999874
No 55
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=95.16 E-value=0.077 Score=46.40 Aligned_cols=80 Identities=13% Similarity=0.005 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhcCCCHH-----------HHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHc
Q 023713 109 AFKSISAMSDRLGLVTT-----------IKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVAN 177 (278)
Q Consensus 109 ~~~~I~~i~~~L~Lp~~-----------v~e~A~~i~k~~~~~~~~~gr~~~~~aAAclY~acR~~~~p~tl~eia~~~~ 177 (278)
..++|..++..+++++. ....+..+.....-...+-+.+|..+||||||+|+. ..++..+ +
T Consensus 151 p~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la~~-------~~~l~~~-t 222 (283)
T 1w98_B 151 IVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFSS-------SELMQKV-S 222 (283)
T ss_dssp HHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTSC-------HHHHHHH-S
T ss_pred HHHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHC-------hHHHHHH-h
Confidence 46788888888776532 223344555554422225678999999999999863 5677775 8
Q ss_pred CCCHHHHHHHHHHHHHHhh
Q 023713 178 GTTKKEIGRAKEFIVKHLE 196 (278)
Q Consensus 178 ~v~~~~i~~~~~~l~~~L~ 196 (278)
|++..+|..+++.|.....
T Consensus 223 g~~~~~i~~c~~~l~~~~~ 241 (283)
T 1w98_B 223 GYQWCDIENCVKWMVPFAM 241 (283)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 9999999999999876554
No 56
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=94.76 E-value=0.058 Score=41.28 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=20.9
Q ss_pred CCCCCCCCCCCceeEeCCCCceEcCCCcccc
Q 023713 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVL 33 (278)
Q Consensus 3 ~~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl 33 (278)
.-.||.|+++ -.-.| ...+||++||.--
T Consensus 27 lP~CP~C~se-ytYeD--g~l~vCPeC~hEW 54 (138)
T 2akl_A 27 LPPCPQCNSE-YTYED--GALLVCPECAHEW 54 (138)
T ss_dssp SCCCTTTCCC-CCEEC--SSSEEETTTTEEE
T ss_pred CCCCCCCCCc-ceEec--CCeEECCcccccc
Confidence 4679999994 33333 5679999999765
No 57
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=94.28 E-value=0.021 Score=37.37 Aligned_cols=28 Identities=25% Similarity=0.708 Sum_probs=21.5
Q ss_pred CCCCCCCCCCCceeEeCCCCceEcCCCccc
Q 023713 3 DSYCADCKRLTEVVFDHSAGDTICSECGLV 32 (278)
Q Consensus 3 ~~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~V 32 (278)
+..||.||+ . +......+...|..||..
T Consensus 18 ~~fCPkCG~-~-~~ma~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 18 HRFCPRCGP-G-VFLAEHADRYSCGRCGYT 45 (55)
T ss_dssp SCCCTTTTT-T-CCCEECSSEEECTTTCCC
T ss_pred cccCcCCCC-c-eeEeccCCEEECCCCCCE
Confidence 578999997 3 333344579999999997
No 58
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=94.24 E-value=0.22 Score=44.41 Aligned_cols=78 Identities=8% Similarity=0.050 Sum_probs=54.7
Q ss_pred cCCCHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhcCCCCCH--HHHHHH-HcCCCHHHHHHHHHHHHHHhh
Q 023713 120 LGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV--KEFCSV-ANGTTKKEIGRAKEFIVKHLE 196 (278)
Q Consensus 120 L~Lp~~v~e~A~~i~k~~~~~~~~~gr~~~~~aAAclY~acR~~~~p~tl--~eia~~-~~~v~~~~i~~~~~~l~~~L~ 196 (278)
++.|+.+...|..+..........-+..|..+||||||+|++..+.+.+. .++-.. ..+.+...|..+.+.|...+.
T Consensus 181 ~~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~IAaAai~lA~~~~~~~~~~w~~~l~~~~~~~~~~~~l~~~~~~i~~l~~ 260 (323)
T 1jkw_A 181 LENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMKSMRNLVK 260 (323)
T ss_dssp CCCHHHHHHHHHHHHHHHTTSTHHHHSCHHHHHHHHHHHHHHHHSCCCTTHHHHHTTSCSSSCCTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhccHHHcCCHHHHHHHHHHHHHHHcCCChHHHHHHHhccccccccHHHHHHHHHHHHHHHH
Confidence 34556788889888888766555557889999999999999998876442 222110 024467788888888877665
Q ss_pred h
Q 023713 197 A 197 (278)
Q Consensus 197 ~ 197 (278)
.
T Consensus 261 ~ 261 (323)
T 1jkw_A 261 K 261 (323)
T ss_dssp T
T ss_pred c
Confidence 3
No 59
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=93.85 E-value=0.016 Score=36.53 Aligned_cols=27 Identities=30% Similarity=0.679 Sum_probs=18.0
Q ss_pred CCCCCCCCCCCCCceeEeCCCCc----------eEcCCCcc
Q 023713 1 MADSYCADCKRLTEVVFDHSAGD----------TICSECGL 31 (278)
Q Consensus 1 ~~~~~Cp~Cg~~~~vv~D~~~G~----------~vC~~CG~ 31 (278)
|....|+.||- |+|++.|+ .+|..||.
T Consensus 2 m~~y~C~vCGy----vyd~~~Gd~t~f~~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 2 MQKYVCNVCGY----EYDPAEHDNVPFDQLPDDWCCPVCGV 38 (46)
T ss_dssp CCCEEETTTCC----EECGGGGTTCCGGGSCTTCBCTTTCC
T ss_pred CCEEECCCCCe----EEeCCcCCCcchhhCCCCCcCcCCCC
Confidence 45567888885 57766663 47777775
No 60
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=93.64 E-value=0.054 Score=35.53 Aligned_cols=27 Identities=26% Similarity=0.671 Sum_probs=22.4
Q ss_pred CCCCCCCCCCCceeEeCCCCceEcC--CCcccc
Q 023713 3 DSYCADCKRLTEVVFDHSAGDTICS--ECGLVL 33 (278)
Q Consensus 3 ~~~Cp~Cg~~~~vv~D~~~G~~vC~--~CG~Vl 33 (278)
...||.|++ .+.+|. |+++|. +||...
T Consensus 10 iL~CP~c~~--~L~~~~--~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 10 ILACPACHA--PLEERD--AELICTGQDCGLAY 38 (56)
T ss_dssp SCCCSSSCS--CEEEET--TEEEECSSSCCCEE
T ss_pred heeCCCCCC--cceecC--CEEEcCCcCCCcEE
Confidence 357999998 477764 999999 999876
No 61
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=93.11 E-value=0.036 Score=36.12 Aligned_cols=18 Identities=28% Similarity=0.680 Sum_probs=12.0
Q ss_pred CCCCCCCCCCCCCceeEeCCCC
Q 023713 1 MADSYCADCKRLTEVVFDHSAG 22 (278)
Q Consensus 1 ~~~~~Cp~Cg~~~~vv~D~~~G 22 (278)
|....|+.||- |+|++.|
T Consensus 1 m~~y~C~vCGy----vYd~~~G 18 (54)
T 4rxn_A 1 MKKYTCTVCGY----IYDPEDG 18 (54)
T ss_dssp CCCEEETTTCC----EECTTTC
T ss_pred CCceECCCCCe----EECCCcC
Confidence 55566777774 5776666
No 62
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=92.60 E-value=0.039 Score=35.64 Aligned_cols=19 Identities=32% Similarity=0.593 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCCCceeEeCCCCc
Q 023713 1 MADSYCADCKRLTEVVFDHSAGD 23 (278)
Q Consensus 1 ~~~~~Cp~Cg~~~~vv~D~~~G~ 23 (278)
|....|+.||- |+|++.|+
T Consensus 1 m~~y~C~~CGy----vYd~~~Gd 19 (52)
T 1e8j_A 1 MDIYVCTVCGY----EYDPAKGD 19 (52)
T ss_dssp CCCEECSSSCC----CCCTTTCC
T ss_pred CCcEEeCCCCe----EEcCCcCC
Confidence 44455666664 35555443
No 63
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=92.52 E-value=0.79 Score=44.62 Aligned_cols=71 Identities=14% Similarity=0.184 Sum_probs=56.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhh-CCC----CCCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHH
Q 023713 112 SISAMSDRLGLVTTIKDRANEIYKKVED-QKP----LRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184 (278)
Q Consensus 112 ~I~~i~~~L~Lp~~v~e~A~~i~k~~~~-~~~----~~gr~~~~~aAAclY~acR~~~~p~tl~eia~~~~~v~~~~i 184 (278)
.-..+|..|++++.+.++|.+.|+.... .+. +.| ....+.|+.+|.||+.+|..+||-.|-.. .+++..+.
T Consensus 7 ~f~~lC~~Ln~d~~~~~~Aw~~~~~~~~~~~~l~~tleg-~~~~W~aC~ly~~~~~~gn~vsLt~lLr~-~~lsl~~F 82 (656)
T 4elj_A 7 DFTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQK-KKELWGICIFIAAVDLDEMSFTFTELQKN-IEISVHKF 82 (656)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHCSCC-----C-CHHHHHHHHHHHHHHTTCCCSCHHHHHHH-HTCCHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhccccccCCccc-chHHhhhhhheeeeeccCCeeeHHHHHHH-hcCCHHHH
Confidence 4678899999999999999999999874 222 223 56677777888888899999999999884 78876554
No 64
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=92.01 E-value=0.066 Score=39.19 Aligned_cols=30 Identities=13% Similarity=0.065 Sum_probs=23.9
Q ss_pred CCCCCCCCCCCCceeEeCC---------------------------CCceEcCCCcccc
Q 023713 2 ADSYCADCKRLTEVVFDHS---------------------------AGDTICSECGLVL 33 (278)
Q Consensus 2 ~~~~Cp~Cg~~~~vv~D~~---------------------------~G~~vC~~CG~Vl 33 (278)
+...||.|+. .+.++.. +|.++|.+||...
T Consensus 7 dILaCP~cK~--pL~l~~~~~~~~~~ca~~~~~~~~~~~~~~~e~~~~~LvC~~c~~~Y 63 (97)
T 2k5r_A 7 HLLCSPDTRQ--PLSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRKQVF 63 (97)
T ss_dssp SSCCCCTTSS--CCEECCHHHHHHHHHHHHHTCCBCTTSCBCCCCCSEEEECTTSCEEE
T ss_pred hheECCCCCC--cccccccchhhhhhhhhhccccccccccccccccCCeEEcCCCCCCc
Confidence 4568999997 3566554 7899999999986
No 65
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=91.51 E-value=0.054 Score=37.23 Aligned_cols=27 Identities=26% Similarity=0.757 Sum_probs=18.0
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCcc-cc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGL-VL 33 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~-Vl 33 (278)
..|++||.. +.. .....+.|.+||. ||
T Consensus 29 Y~C~~CG~~--~e~-~~~d~irCp~CG~RIL 56 (70)
T 1twf_L 29 YICAECSSK--LSL-SRTDAVRCKDCGHRIL 56 (70)
T ss_dssp EECSSSCCE--ECC-CTTSTTCCSSSCCCCC
T ss_pred EECCCCCCc--cee-CCCCCccCCCCCceEe
Confidence 579999973 222 2345567999998 65
No 66
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=91.26 E-value=6.3 Score=34.44 Aligned_cols=104 Identities=9% Similarity=0.040 Sum_probs=78.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhC--CC-CCCCcHHHHHHHHHHHHHH-hcCCCCCHHHHHHHHcCCCHHHH
Q 023713 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQ--KP-LRGRNQEAIVAACLYIACR-QENKPRTVKEFCSVANGTTKKEI 184 (278)
Q Consensus 109 ~~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~--~~-~~gr~~~~~aAAclY~acR-~~~~p~tl~eia~~~~~v~~~~i 184 (278)
..++|.++...-.++..+.-.|..++.++... ++ +...+..-+..+++-+|.+ ..+...+-+..|.+ .|++..+|
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkV-gGisl~EL 155 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKV-GGVRCHEL 155 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHH-HTSCHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhc-cCcCHHHH
Confidence 45688888888899998888888888887663 22 2344666677777777777 66777888999996 89999999
Q ss_pred HHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhh
Q 023713 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSN 220 (278)
Q Consensus 185 ~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~ 220 (278)
++..+++...++.+ + .+++++|..-+...
T Consensus 156 N~LE~eFL~lLdf~------L-~V~~ee~~~cy~E~ 184 (293)
T 2pmi_B 156 NILENDFLKRVNYR------I-IPRDHNITLCSIEQ 184 (293)
T ss_dssp HHHHHHHHHTTTTC------C-SCCTTHHHHHHHHS
T ss_pred HHHHHHHHHHcCCc------e-eeCHHHHHHHHHHH
Confidence 99999999999876 2 24556666544444
No 67
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=91.17 E-value=0.15 Score=38.40 Aligned_cols=31 Identities=16% Similarity=0.439 Sum_probs=22.1
Q ss_pred CCCCCCCCCCCCceeEeCCCC----ceEcCCCccccc
Q 023713 2 ADSYCADCKRLTEVVFDHSAG----DTICSECGLVLE 34 (278)
Q Consensus 2 ~~~~Cp~Cg~~~~vv~D~~~G----~~vC~~CG~Vl~ 34 (278)
.|..||+||+- +......| .++|..||.+..
T Consensus 3 ~m~FCp~Cgn~--L~~~~~~~~~~~~~~C~~C~y~~~ 37 (113)
T 3h0g_I 3 NFQYCIECNNM--LYPREDKVDRVLRLACRNCDYSEI 37 (113)
T ss_dssp CCCCCSSSCCC--CEECCCTTTCCCCEECSSSCCEEC
T ss_pred cceeCcCCCCE--eeEcccCCCCeeEEECCCCCCeEE
Confidence 46899999972 44433322 699999999763
No 68
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=91.16 E-value=0.079 Score=31.43 Aligned_cols=29 Identities=21% Similarity=0.582 Sum_probs=20.4
Q ss_pred CCCCCCCC-CceeEeCCCCceEcCCCcccc
Q 023713 5 YCADCKRL-TEVVFDHSAGDTICSECGLVL 33 (278)
Q Consensus 5 ~Cp~Cg~~-~~vv~D~~~G~~vC~~CG~Vl 33 (278)
.||.||++ +.++.+...=.+-|..||..-
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~~~ 31 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAIR 31 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCCcc
Confidence 59999995 344554455556799999763
No 69
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=91.09 E-value=0.13 Score=44.10 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=21.9
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLV 32 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~V 32 (278)
..||.||+.....++ ..|...|-+||.-
T Consensus 15 ~~CP~Cg~~d~~~~~-~dg~~~C~~Cg~~ 42 (255)
T 1nui_A 15 IPCDNCGSSDGNSLF-SDGHTFCYVCEKW 42 (255)
T ss_dssp ECCSSSCCSSCEEEE-TTSCEEETTTCCE
T ss_pred CcCCCCCCCCCceEe-CCCCeecccCCCc
Confidence 479999984456655 4688999999975
No 70
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=90.99 E-value=0.31 Score=33.90 Aligned_cols=45 Identities=11% Similarity=0.166 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhh
Q 023713 153 AACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198 (278)
Q Consensus 153 AAclY~acR~~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~ 198 (278)
---|+-+.+..+.|....||+.. +|++.+++.++++.|.+.-.+.
T Consensus 21 eekVLe~LkeaG~PlkageIae~-~GvdKKeVdKaik~LKkEgkI~ 65 (80)
T 2lnb_A 21 EQRILQVLTEAGSPVKLAQLVKE-CQAPKRELNQVLYRMKKELKVS 65 (80)
T ss_dssp HHHHHHHHHHHTSCEEHHHHHHH-HTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHH-HCCCHHHHHHHHHHHHHcCCcc
Confidence 33466788999999999999995 9999999999999999877653
No 71
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=90.78 E-value=0.17 Score=33.07 Aligned_cols=31 Identities=16% Similarity=0.416 Sum_probs=21.5
Q ss_pred CCCCCCCCCCceeEeC------CCC---ceEcCCCcccccc
Q 023713 4 SYCADCKRLTEVVFDH------SAG---DTICSECGLVLEA 35 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~------~~G---~~vC~~CG~Vl~e 35 (278)
..||.||. ..+++.. +++ .++|.+||..-.+
T Consensus 16 ~~Cp~Cg~-~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 16 ITCPKCGN-DTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp CCCTTTCC-SEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred eECCCCCC-CEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 57999998 5665442 223 4799999987654
No 72
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=90.10 E-value=0.16 Score=35.93 Aligned_cols=32 Identities=28% Similarity=0.507 Sum_probs=25.9
Q ss_pred CCCCCCCCCCCceeEeCCCCceEcCCCccccccc
Q 023713 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAY 36 (278)
Q Consensus 3 ~~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~e~ 36 (278)
...||.||+ .. +.-...|-+-|..||.++...
T Consensus 35 ky~CpfCGk-~~-vkR~a~GIW~C~kCg~~~AGG 66 (83)
T 3j21_i 35 KHTCPVCGR-KA-VKRISTGIWQCQKCGATFAGG 66 (83)
T ss_dssp CBCCSSSCS-SC-EEEEETTEEEETTTCCEEECC
T ss_pred ccCCCCCCC-ce-eEecCcCeEEcCCCCCEEeCC
Confidence 467999998 45 445679999999999998654
No 73
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=89.54 E-value=0.19 Score=38.32 Aligned_cols=32 Identities=25% Similarity=0.456 Sum_probs=23.4
Q ss_pred CCCCCCCCCCCCCceeE--e--CCCCceEcCCCccccc
Q 023713 1 MADSYCADCKRLTEVVF--D--HSAGDTICSECGLVLE 34 (278)
Q Consensus 1 ~~~~~Cp~Cg~~~~vv~--D--~~~G~~vC~~CG~Vl~ 34 (278)
|.+..||+||+ -+.. | ...+.++|..||....
T Consensus 2 ~~~~FCp~Cgn--lL~~~~~~~~~~~~~~C~~C~y~~~ 37 (122)
T 1twf_I 2 TTFRFCRDCNN--MLYPREDKENNRLLFECRTCSYVEE 37 (122)
T ss_dssp CCCCBCSSSCC--BCEEEEETTTTEEEEECSSSSCEEE
T ss_pred CCCCcccccCc--cCcccccCcCCCCEEECCcCCCeee
Confidence 46789999997 2332 3 3456899999999764
No 74
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=89.45 E-value=0.19 Score=34.54 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=25.7
Q ss_pred CCCCCCCCCCCceeEeCCCCceEcCCCccccccc
Q 023713 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAY 36 (278)
Q Consensus 3 ~~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~e~ 36 (278)
...||.||. .. +.-...|-+-|..||.++...
T Consensus 26 ky~C~fCgk-~~-vkR~a~GIW~C~~C~~~~AGG 57 (72)
T 3jyw_9 26 RYDCSFCGK-KT-VKRGAAGIWTCSCCKKTVAGG 57 (72)
T ss_dssp CBCCSSCCS-SC-BSBCSSSCBCCSSSCCCCCCS
T ss_pred CccCCCCCC-ce-eEecCCCeEECCCCCCEEeCC
Confidence 367999998 44 445789999999999998644
No 75
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=89.08 E-value=0.21 Score=36.02 Aligned_cols=32 Identities=25% Similarity=0.481 Sum_probs=25.4
Q ss_pred CCCCCCCCCCCceeEeCCCCceEcCCCccccccc
Q 023713 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAY 36 (278)
Q Consensus 3 ~~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~e~ 36 (278)
...||.||. .. +.-...|-+-|..||.++...
T Consensus 36 ky~CpfCgk-~~-vkR~a~GIW~C~~Cg~~~AGG 67 (92)
T 3iz5_m 36 KYFCEFCGK-FA-VKRKAVGIWGCKDCGKVKAGG 67 (92)
T ss_dssp CBCCTTTCS-SC-BEEEETTEEECSSSCCEEECC
T ss_pred cccCcccCC-Ce-eEecCcceEEcCCCCCEEeCC
Confidence 367999998 45 445679999999999998633
No 76
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=89.08 E-value=0.12 Score=33.71 Aligned_cols=18 Identities=28% Similarity=0.646 Sum_probs=9.5
Q ss_pred CCCCCCCCCCCCCceeEeCCCC
Q 023713 1 MADSYCADCKRLTEVVFDHSAG 22 (278)
Q Consensus 1 ~~~~~Cp~Cg~~~~vv~D~~~G 22 (278)
|....|+.||- |+|++.|
T Consensus 1 m~~y~C~~CGy----vYd~~~G 18 (55)
T 2v3b_B 1 MRKWQCVVCGF----IYDEALG 18 (55)
T ss_dssp CCEEEETTTCC----EEETTTC
T ss_pred CCcEEeCCCCe----EECCCcC
Confidence 34455666664 4555544
No 77
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=88.72 E-value=0.2 Score=34.60 Aligned_cols=32 Identities=19% Similarity=0.400 Sum_probs=25.1
Q ss_pred CCCCCCCCCCCceeEeCCCCceEcCCCccccccc
Q 023713 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAY 36 (278)
Q Consensus 3 ~~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~e~ 36 (278)
...||.||. ..+ .-...|-+.|..||.++...
T Consensus 27 ky~C~fCgk-~~v-kR~a~GIW~C~~C~~~~AGG 58 (73)
T 1ffk_W 27 KYKCPVCGF-PKL-KRASTSIWVCGHCGYKIAGG 58 (73)
T ss_pred CccCCCCCC-cee-EEEEeEEEECCCCCcEEECC
Confidence 367999998 444 44578999999999998644
No 78
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=88.37 E-value=0.22 Score=37.44 Aligned_cols=31 Identities=23% Similarity=0.434 Sum_probs=24.6
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCccccccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAY 36 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~e~ 36 (278)
..||.||. .++ .-...|-+-|..||.++...
T Consensus 61 ytCPfCGk-~~v-KR~avGIW~C~~Cgk~fAGG 91 (116)
T 3cc2_Z 61 HACPNCGE-DRV-DRQGTGIWQCSYCDYKFTGG 91 (116)
T ss_dssp EECSSSCC-EEE-EEEETTEEEETTTCCEEECC
T ss_pred CcCCCCCC-cee-EecCceeEECCCCCCEEECC
Confidence 57999998 444 44568999999999998644
No 79
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=88.33 E-value=0.24 Score=35.71 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=25.3
Q ss_pred CCCCCCCCCCCceeEeCCCCceEcCCCccccccc
Q 023713 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAY 36 (278)
Q Consensus 3 ~~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~e~ 36 (278)
...||.||. +. +.-...|-+-|..||.++...
T Consensus 36 ky~CpfCgk-~~-vkR~a~GIW~C~~C~~~~AGG 67 (92)
T 3izc_m 36 RYDCSFCGK-KT-VKRGAAGIWTCSCCKKTVAGG 67 (92)
T ss_dssp CCCCSSSCS-SC-CEEEETTEEECTTTCCEEECC
T ss_pred CCcCCCCCC-ce-eeecccceEEcCCCCCEEeCC
Confidence 467999998 44 445679999999999998633
No 80
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=88.24 E-value=0.23 Score=36.45 Aligned_cols=30 Identities=20% Similarity=0.420 Sum_probs=24.5
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCcccccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEA 35 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~e 35 (278)
..||.||. +. +.-...|-+-|..||.++..
T Consensus 37 y~CpfCgk-~~-vKR~a~GIW~C~kCg~~~AG 66 (103)
T 4a17_Y 37 YGCPFCGK-VA-VKRAAVGIWKCKPCKKIIAG 66 (103)
T ss_dssp EECTTTCC-EE-EEEEETTEEEETTTTEEEEC
T ss_pred CCCCCCCC-ce-eeecCcceEEcCCCCCEEeC
Confidence 57999998 44 55567999999999999863
No 81
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=88.16 E-value=0.16 Score=35.83 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=11.8
Q ss_pred CCceEcCCCccccccc
Q 023713 21 AGDTICSECGLVLEAY 36 (278)
Q Consensus 21 ~G~~vC~~CG~Vl~e~ 36 (278)
...++|..||.|.++.
T Consensus 25 m~~y~C~vCGyvYD~~ 40 (81)
T 2kn9_A 25 YKLFRCIQCGFEYDEA 40 (81)
T ss_dssp CCEEEETTTCCEEETT
T ss_pred cceEEeCCCCEEEcCC
Confidence 3468888888888754
No 82
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=87.77 E-value=0.18 Score=35.98 Aligned_cols=43 Identities=23% Similarity=0.414 Sum_probs=28.4
Q ss_pred CCCCCCCCCCce--eEeC--CCCceEcCCCccccccc------ccccccchhh
Q 023713 4 SYCADCKRLTEV--VFDH--SAGDTICSECGLVLEAY------SVDETSEWRI 46 (278)
Q Consensus 4 ~~Cp~Cg~~~~v--v~D~--~~G~~vC~~CG~Vl~e~------~id~~~ewr~ 46 (278)
..||.|+.+..+ ..|. ..|.+.|..||.-.+-. .||-.++|..
T Consensus 24 F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~~L~epiDVYs~WiD 76 (85)
T 1wii_A 24 FTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWID 76 (85)
T ss_dssp CCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEEECCSSCCTTHHHHHHHH
T ss_pred EcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEeccCccCcchhhHHHHHH
Confidence 569999985334 4443 57899999999876433 2444455643
No 83
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=87.75 E-value=0.18 Score=34.55 Aligned_cols=8 Identities=25% Similarity=0.634 Sum_probs=4.1
Q ss_pred CCCCCCCC
Q 023713 4 SYCADCKR 11 (278)
Q Consensus 4 ~~Cp~Cg~ 11 (278)
..|+.||-
T Consensus 8 y~C~vCGy 15 (70)
T 1dx8_A 8 YECEACGY 15 (70)
T ss_dssp EEETTTCC
T ss_pred EEeCCCCE
Confidence 44555553
No 84
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=86.76 E-value=0.33 Score=28.60 Aligned_cols=27 Identities=26% Similarity=0.679 Sum_probs=15.9
Q ss_pred CCCCCCCCCCCCceeEeCCCCceEcCCCcc
Q 023713 2 ADSYCADCKRLTEVVFDHSAGDTICSECGL 31 (278)
Q Consensus 2 ~~~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~ 31 (278)
+...|+.||.. -.+.....|+++| ||.
T Consensus 5 ~fY~C~~CGni-vev~~~g~~~l~C--CG~ 31 (36)
T 1dxg_A 5 DVYKCELCGQV-VKVLEEGGGTLVC--CGE 31 (36)
T ss_dssp CEEECTTTCCE-EEEEECCSSCEEE--TTE
T ss_pred cEEEcCCCCcE-EEEEeCCCcCEEe--CCc
Confidence 34568888752 2233456677777 554
No 85
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=86.56 E-value=0.33 Score=37.57 Aligned_cols=29 Identities=21% Similarity=0.391 Sum_probs=20.1
Q ss_pred CCCCCCCCCCCceeEeCC----CCceEcCCCcccc
Q 023713 3 DSYCADCKRLTEVVFDHS----AGDTICSECGLVL 33 (278)
Q Consensus 3 ~~~Cp~Cg~~~~vv~D~~----~G~~vC~~CG~Vl 33 (278)
+..||+||+ -+..... ...++|+.||.+.
T Consensus 24 ~~FCPeCgN--mL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 24 FRFCRDCNN--MLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp CCBCTTTCC--BCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred CeeCCCCCC--EeeECccCCCceeEEECCCCCCcE
Confidence 578999997 2332221 2269999999975
No 86
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=85.70 E-value=0.2 Score=32.11 Aligned_cols=23 Identities=26% Similarity=0.677 Sum_probs=19.7
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLV 32 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~V 32 (278)
..||.||+. ...|-+-|..||..
T Consensus 15 ~iCpkC~a~------~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 15 YVCLRCGAT------NPWGAKKCRKCGYK 37 (51)
T ss_dssp EECTTTCCE------ECTTCSSCSSSSSC
T ss_pred ccCCCCCCc------CCCCceecCCCCCc
Confidence 679999982 46899999999998
No 87
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=85.64 E-value=0.39 Score=32.99 Aligned_cols=27 Identities=26% Similarity=0.581 Sum_probs=22.3
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCccccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~ 34 (278)
..|| ||.. .+.|...-..-|. ||.++.
T Consensus 5 v~C~-C~~~--~~~~~~~kT~~C~-CG~~~~ 31 (71)
T 1gh9_A 5 FRCD-CGRA--LYSREGAKTRKCV-CGRTVN 31 (71)
T ss_dssp EEET-TSCC--EEEETTCSEEEET-TTEEEE
T ss_pred EECC-CCCE--EEEcCCCcEEECC-CCCeee
Confidence 3699 9983 6777788889999 999985
No 88
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=85.47 E-value=0.29 Score=32.47 Aligned_cols=25 Identities=24% Similarity=0.569 Sum_probs=19.1
Q ss_pred CCCCCCCCCCCCceeEeCCCCceEcCCCccccc
Q 023713 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (278)
Q Consensus 2 ~~~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~ 34 (278)
-+..||.||. -++ ..+|..||....
T Consensus 5 ~mr~C~~Cgv-YTL-------k~~CP~CG~~T~ 29 (60)
T 2apo_B 5 RMKKCPKCGL-YTL-------KEICPKCGEKTV 29 (60)
T ss_dssp CCEECTTTCC-EES-------SSBCSSSCSBCB
T ss_pred hceeCCCCCC-Eec-------cccCcCCCCcCC
Confidence 4678999997 333 667999998864
No 89
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=84.38 E-value=0.25 Score=35.32 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=12.1
Q ss_pred CCceEcCCCccccccc
Q 023713 21 AGDTICSECGLVLEAY 36 (278)
Q Consensus 21 ~G~~vC~~CG~Vl~e~ 36 (278)
...++|..||.|.++.
T Consensus 33 m~~y~C~vCGyvYD~~ 48 (87)
T 1s24_A 33 YLKWICITCGHIYDEA 48 (87)
T ss_dssp CCEEEETTTTEEEETT
T ss_pred CceEECCCCCeEecCC
Confidence 4568888888888753
No 90
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=83.56 E-value=0.87 Score=28.93 Aligned_cols=30 Identities=23% Similarity=0.433 Sum_probs=19.2
Q ss_pred CCCCCCCCCCCceeEe--------CCCCceEcCCCccc
Q 023713 3 DSYCADCKRLTEVVFD--------HSAGDTICSECGLV 32 (278)
Q Consensus 3 ~~~Cp~Cg~~~~vv~D--------~~~G~~vC~~CG~V 32 (278)
...||.||....+.+. +.+=.++|.+||..
T Consensus 9 ~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~ 46 (50)
T 1tfi_A 9 LFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNR 46 (50)
T ss_dssp CSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCE
T ss_pred ccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCe
Confidence 3589999985443332 12234799999963
No 91
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=83.50 E-value=6.1 Score=33.63 Aligned_cols=86 Identities=12% Similarity=0.063 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhcCCCHH----HHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhcCCCCC----HHHHHHHHcCCC
Q 023713 109 AFKSISAMSDRLGLVTT----IKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT----VKEFCSVANGTT 180 (278)
Q Consensus 109 ~~~~I~~i~~~L~Lp~~----v~e~A~~i~k~~~~~~~~~gr~~~~~aAAclY~acR~~~~p~t----l~eia~~~~~v~ 180 (278)
.+.++..+...++.+.. +.+.|..+.....-.-.+-..+|..+||||+..+. .+.+.. ...++.. ++++
T Consensus 149 p~~FL~~~l~~~~~~~~~~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~l--~~~~~~~~~~~~~L~~~-t~~~ 225 (252)
T 1f5q_B 149 STDLICYILHIMHAPREDYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTM--NQKYDYYENRIDGVCKS-LYIT 225 (252)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHH-TTCC
T ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHh--ccCCCchhhHHHHHHHH-HCcC
Confidence 56788888888888864 33455554444332211234678889999965554 343333 3346664 8999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 023713 181 KKEIGRAKEFIVKHLEA 197 (278)
Q Consensus 181 ~~~i~~~~~~l~~~L~~ 197 (278)
..+|..+++.|.+.+..
T Consensus 226 ~~~l~~C~~~i~~~l~~ 242 (252)
T 1f5q_B 226 KEELHQCCDLVDIAIVS 242 (252)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988753
No 92
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=80.70 E-value=0.65 Score=29.79 Aligned_cols=12 Identities=25% Similarity=0.825 Sum_probs=6.2
Q ss_pred eEcCCCcccccc
Q 023713 24 TICSECGLVLEA 35 (278)
Q Consensus 24 ~vC~~CG~Vl~e 35 (278)
.+|+.||.|.++
T Consensus 3 ~~C~~CGyvYd~ 14 (52)
T 1yk4_A 3 LSCKICGYIYDE 14 (52)
T ss_dssp EEESSSSCEEET
T ss_pred EEeCCCCeEECC
Confidence 355555555543
No 93
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=80.20 E-value=3.6 Score=32.53 Aligned_cols=48 Identities=8% Similarity=0.060 Sum_probs=40.0
Q ss_pred CcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 146 RNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 146 r~~~~~aAAclY~acR~~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
++.+.-.-+.+|+|.+..+.|.|..|||+. .+++...+.+.+..|.+.
T Consensus 24 ~~~~yAlr~L~~LA~~~~~~~~s~~eIA~~-~~i~~~~l~kil~~L~~a 71 (159)
T 3lwf_A 24 TKGRYGLTITLELAKRIGDGPISLRSIAQD-KNLSEHYLEQLIGPLRNA 71 (159)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCBCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhcCCCCCcCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 345667778888887766779999999994 999999999999999863
No 94
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=79.58 E-value=1 Score=36.38 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=21.4
Q ss_pred CCCCCCCCCceeEeCCCCceEcCCCccc
Q 023713 5 YCADCKRLTEVVFDHSAGDTICSECGLV 32 (278)
Q Consensus 5 ~Cp~Cg~~~~vv~D~~~G~~vC~~CG~V 32 (278)
.||.|.+. |.+...|.+.|..||..
T Consensus 44 ACp~CnKK---V~~~~~g~~~CekC~~~ 68 (172)
T 3u50_C 44 RCTCQGKS---VLKYHGDSFFCESCQQF 68 (172)
T ss_dssp ECTTSCCC---EEEETTTEEEETTTTEE
T ss_pred hchhhCCE---eeeCCCCeEECCCCCCC
Confidence 59999983 44678999999999998
No 95
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=78.17 E-value=0.77 Score=28.66 Aligned_cols=33 Identities=21% Similarity=0.650 Sum_probs=21.9
Q ss_pred CCCCCCCCCCCCceeE-eCCCCceEcCCCccccc
Q 023713 2 ADSYCADCKRLTEVVF-DHSAGDTICSECGLVLE 34 (278)
Q Consensus 2 ~~~~Cp~Cg~~~~vv~-D~~~G~~vC~~CG~Vl~ 34 (278)
+...|.+||...+-.+ ...+|..+|..||+-..
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k 36 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGHYLCNACGLYHK 36 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHH
T ss_pred CCCCCCCcCCCCCCcCccCCCCCccchHHHHHHH
Confidence 3467999997432222 23578899999998653
No 96
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=77.99 E-value=3.5 Score=27.44 Aligned_cols=33 Identities=12% Similarity=0.163 Sum_probs=28.3
Q ss_pred HhcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 161 RQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 161 R~~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
+.++.|.+..|||.. ++++..++.+.++.|.+.
T Consensus 20 ~~~~~~~s~~eLA~~-lglsr~tv~~~l~~L~~~ 52 (67)
T 2heo_A 20 SDDGGPVAIFQLVKK-CQVPKKTLNQVLYRLKKE 52 (67)
T ss_dssp HHHCSCEEHHHHHHH-HCSCHHHHHHHHHHHHHT
T ss_pred HHcCCCcCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 346678999999994 999999999999998764
No 97
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=77.96 E-value=0.9 Score=31.49 Aligned_cols=30 Identities=20% Similarity=0.437 Sum_probs=18.9
Q ss_pred CCCCCCCCCCceeE-------eCC-------C-CceEcCCCccccc
Q 023713 4 SYCADCKRLTEVVF-------DHS-------A-GDTICSECGLVLE 34 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~-------D~~-------~-G~~vC~~CG~Vl~ 34 (278)
+.||.||+ ..++. ++. + --.+|..||.++=
T Consensus 3 m~Cp~Cg~-~~l~~~~~~~~~~~~G~~~~I~~Vp~~~C~~CGE~~~ 47 (78)
T 3ga8_A 3 MKCPVCHQ-GEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIM 47 (78)
T ss_dssp CBCTTTSS-SBEEEEEEEEEEEETTEEEEEEEEEEEEETTTCCEEC
T ss_pred eECCCCCC-CeeEeEEEEEEEEECCEEEEEcCceeEECCCCCCEEE
Confidence 68999997 33332 221 1 2357999998764
No 98
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=77.63 E-value=3.5 Score=28.53 Aligned_cols=32 Identities=13% Similarity=0.097 Sum_probs=27.9
Q ss_pred CCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Q 023713 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLE 196 (278)
Q Consensus 164 ~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~ 196 (278)
|.|.|+.||++ .+|++..++.+-+..|.+.=-
T Consensus 22 g~~psv~EIa~-~lgvS~~TVrr~L~~Le~kG~ 53 (77)
T 2jt1_A 22 GAPVKTRDIAD-AAGLSIYQVRLYLEQLHDVGV 53 (77)
T ss_dssp TSCEEHHHHHH-HHTCCHHHHHHHHHHHHHTTS
T ss_pred CCCcCHHHHHH-HHCCCHHHHHHHHHHHHHCCc
Confidence 79999999999 599999999999998876543
No 99
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=77.00 E-value=1.3 Score=29.55 Aligned_cols=27 Identities=30% Similarity=0.637 Sum_probs=17.1
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCcccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVL 33 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl 33 (278)
..|.+||.+. ..+ ....+-|.+||.=+
T Consensus 22 Y~C~~Cg~~~--~l~-~~~~iRC~~CG~RI 48 (63)
T 3h0g_L 22 YLCADCGARN--TIQ-AKEVIRCRECGHRV 48 (63)
T ss_dssp CBCSSSCCBC--CCC-SSSCCCCSSSCCCC
T ss_pred EECCCCCCee--ecC-CCCceECCCCCcEE
Confidence 6788888732 222 34568888888643
No 100
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=76.40 E-value=0.79 Score=30.30 Aligned_cols=24 Identities=25% Similarity=0.592 Sum_probs=18.1
Q ss_pred CCCCCCCCCCCCceeEeCCCCceEcCCCcccc
Q 023713 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVL 33 (278)
Q Consensus 2 ~~~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl 33 (278)
-+..|+.||. -++ ..+|..||...
T Consensus 4 ~mr~C~~Cg~-YTL-------k~~CP~CG~~t 27 (60)
T 2aus_D 4 RIRKCPKCGR-YTL-------KETCPVCGEKT 27 (60)
T ss_dssp CCEECTTTCC-EES-------SSBCTTTCSBC
T ss_pred cceECCCCCC-EEc-------cccCcCCCCcc
Confidence 4678999997 332 56799999775
No 101
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=76.09 E-value=1.6 Score=30.78 Aligned_cols=27 Identities=19% Similarity=0.747 Sum_probs=19.8
Q ss_pred CCCCCCCCCceeEeCCCCceEcCCCcccc
Q 023713 5 YCADCKRLTEVVFDHSAGDTICSECGLVL 33 (278)
Q Consensus 5 ~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl 33 (278)
.||.|+. .++.+.....+.|..||...
T Consensus 27 wCP~C~~--~~~~~~~~~~v~C~~C~~~F 53 (86)
T 2ct7_A 27 WCAQCSF--GFIYEREQLEATCPQCHQTF 53 (86)
T ss_dssp CCSSSCC--CEECCCSCSCEECTTTCCEE
T ss_pred ECcCCCc--hheecCCCCceEeCCCCCcc
Confidence 5999987 35556556668888888765
No 102
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=75.88 E-value=6.3 Score=29.42 Aligned_cols=43 Identities=9% Similarity=0.136 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Q 023713 150 AIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193 (278)
Q Consensus 150 ~~aAAclY~acR~~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~ 193 (278)
....+..|++-+..+.|.+..|||+. .+++...+.+.+..|.+
T Consensus 10 ~al~iL~~la~~~~~~~~s~~ela~~-~~i~~~~v~~il~~L~~ 52 (129)
T 2y75_A 10 YGLTIMIELAKKHGEGPTSLKSIAQT-NNLSEHYLEQLVSPLRN 52 (129)
T ss_dssp HHHHHHHHHHHTTTSCCBCHHHHHHH-TTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcCCHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 34445556665545678999999994 99999999999999986
No 103
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=75.18 E-value=3.7 Score=31.72 Aligned_cols=46 Identities=7% Similarity=-0.003 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 148 QEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 148 ~~~~aAAclY~acR~~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
.+.-.-+.+|+|-...+.|.|..|||+ ..+++...+.+.+..|.+.
T Consensus 10 ~~yAl~~L~~La~~~~~~~~s~~~IA~-~~~i~~~~l~kil~~L~~a 55 (143)
T 3t8r_A 10 GRYGLTLMISLAKKEGQGCISLKSIAE-ENNLSDLYLEQLVGPLRNA 55 (143)
T ss_dssp HHHHHHHHHHHHTTTTSCCEEHHHHHH-HTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCCCcCHHHHHH-HHCcCHHHHHHHHHHHHHC
Confidence 345556778888765557899999999 4999999999999999763
No 104
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=74.38 E-value=5.4 Score=28.58 Aligned_cols=41 Identities=15% Similarity=0.086 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhhh
Q 023713 154 ACLYIACRQENKPRTVKEFCSVAN-GTTKKEIGRAKEFIVKHLEA 197 (278)
Q Consensus 154 AclY~acR~~~~p~tl~eia~~~~-~v~~~~i~~~~~~l~~~L~~ 197 (278)
.+.|++-.. ...||.+|+.. + |.+..++..+++++.+.+..
T Consensus 36 iamyL~r~~--t~~Sl~~IG~~-fggrdHsTV~ha~~ki~~~~~~ 77 (94)
T 1j1v_A 36 MAMALAKEL--TNHSLPEIGDA-FGGRDHTTVLHACRKIEQLREE 77 (94)
T ss_dssp HHHHHHHHH--SCCCHHHHHHH-TTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HCcCHHHHHHH-hCCCCHHHHHHHHHHHHHHHHh
Confidence 456765443 56789999995 7 89999999999999988764
No 105
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=73.59 E-value=1.4 Score=33.35 Aligned_cols=31 Identities=19% Similarity=0.396 Sum_probs=19.6
Q ss_pred CCCCCCCCCCCceeEe-------C-------CC-CceEcCCCccccc
Q 023713 3 DSYCADCKRLTEVVFD-------H-------SA-GDTICSECGLVLE 34 (278)
Q Consensus 3 ~~~Cp~Cg~~~~vv~D-------~-------~~-G~~vC~~CG~Vl~ 34 (278)
.+.||.||+. .++.+ . .. --.+|.+||.++-
T Consensus 2 ~M~Cp~Cg~~-~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~~~ 47 (133)
T 3o9x_A 2 HMKCPVCHQG-EMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIM 47 (133)
T ss_dssp CCBCTTTSSS-BEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEEC
T ss_pred CcCCCcCCCC-ceeeceEEEEEEECCEEEEECCCceeECCCCCCEee
Confidence 3689999973 22221 1 11 3578999998874
No 106
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=71.64 E-value=5.6 Score=30.78 Aligned_cols=45 Identities=9% Similarity=0.000 Sum_probs=36.6
Q ss_pred cHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Q 023713 147 NQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193 (278)
Q Consensus 147 ~~~~~aAAclY~acR~~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~ 193 (278)
+.+.-.-+.+|++-. .+.|.+.+|||+. .+++...+.+.+..|.+
T Consensus 12 ~~~yAl~~L~~La~~-~~~~~~~~~iA~~-~~i~~~~l~kil~~L~~ 56 (149)
T 1ylf_A 12 RFSIAVHILSILKNN-PSSLCTSDYMAES-VNTNPVVIRKIMSYLKQ 56 (149)
T ss_dssp HHHHHHHHHHHHHHS-CGGGCCHHHHHHH-HTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCCcCHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 345566677777763 5678999999994 99999999999999987
No 107
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=70.98 E-value=2.8 Score=36.18 Aligned_cols=30 Identities=20% Similarity=0.406 Sum_probs=22.0
Q ss_pred CCCCCCCCCCCceeEeCCCCceEcCCCccccc
Q 023713 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (278)
Q Consensus 3 ~~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~ 34 (278)
...||.||+. . ......-..+|..||.+.=
T Consensus 107 ~~fC~~CG~~-~-~~~~~~~~~~C~~C~~~~y 136 (269)
T 1vk6_A 107 HKYCGYCGHE-M-YPSKTEWAMLCSHCRERYY 136 (269)
T ss_dssp TSBCTTTCCB-E-EECSSSSCEEESSSSCEEC
T ss_pred CCccccCCCc-C-ccCCCceeeeCCCCCCEec
Confidence 4789999983 3 3344556789999998754
No 108
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=70.36 E-value=2.5 Score=37.36 Aligned_cols=30 Identities=20% Similarity=0.459 Sum_probs=19.1
Q ss_pred CCCCCCCCCCCce--eEe--CCCC--ceEcCCCccc
Q 023713 3 DSYCADCKRLTEV--VFD--HSAG--DTICSECGLV 32 (278)
Q Consensus 3 ~~~Cp~Cg~~~~v--v~D--~~~G--~~vC~~CG~V 32 (278)
...||.||+...+ +.. ..+| .+.|.-||+-
T Consensus 182 ~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~ 217 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACE 217 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCE
T ss_pred CCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCE
Confidence 4789999995322 321 1356 4889888864
No 109
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=70.07 E-value=3.8 Score=30.95 Aligned_cols=32 Identities=19% Similarity=0.496 Sum_probs=21.1
Q ss_pred CCCCCCCCCCceeEeC--------CCCceEcCCCcccccc
Q 023713 4 SYCADCKRLTEVVFDH--------SAGDTICSECGLVLEA 35 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~--------~~G~~vC~~CG~Vl~e 35 (278)
..||.||....+.+.. .+=.++|.+||..-.+
T Consensus 73 ~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w~~ 112 (122)
T 1twf_I 73 RECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTS 112 (122)
T ss_dssp CCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEEC
T ss_pred CCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEecc
Confidence 5799999854443332 2234799999986543
No 110
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=69.81 E-value=1.7 Score=32.58 Aligned_cols=21 Identities=14% Similarity=0.332 Sum_probs=15.9
Q ss_pred ceeEeCCCCceEcCCCccccc
Q 023713 14 EVVFDHSAGDTICSECGLVLE 34 (278)
Q Consensus 14 ~vv~D~~~G~~vC~~CG~Vl~ 34 (278)
.+......+...|.+||...+
T Consensus 64 ~L~i~~~p~~~~C~~CG~~~e 84 (119)
T 2kdx_A 64 ILDIVDEKVELECKDCSHVFK 84 (119)
T ss_dssp CEEEEEECCEEECSSSSCEEC
T ss_pred EEEEEeccceEEcCCCCCEEe
Confidence 566667778888888888765
No 111
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=69.46 E-value=1.8 Score=26.51 Aligned_cols=31 Identities=29% Similarity=0.755 Sum_probs=21.4
Q ss_pred CCCCCCCCCCc-eeEeCCCCceEcCCCccccc
Q 023713 4 SYCADCKRLTE-VVFDHSAGDTICSECGLVLE 34 (278)
Q Consensus 4 ~~Cp~Cg~~~~-vv~D~~~G~~vC~~CG~Vl~ 34 (278)
..|-+|+...+ .--...+|..+|..||+-..
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k 33 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLK 33 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHH
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHH
Confidence 46899997433 23334578899999997653
No 112
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=68.82 E-value=2.2 Score=28.16 Aligned_cols=24 Identities=25% Similarity=0.679 Sum_probs=16.4
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCccccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~ 34 (278)
..||+||.. ..-.-+|.+||.-=+
T Consensus 31 ~~c~~cG~~-------~~pH~vc~~CG~Y~g 54 (60)
T 2zjr_Z 31 TECPQCHGK-------KLSHHICPNCGYYDG 54 (60)
T ss_dssp EECTTTCCE-------ECTTBCCTTTCBSSS
T ss_pred eECCCCCCE-------eCCceEcCCCCcCCC
Confidence 468888862 234788999996543
No 113
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=68.23 E-value=11 Score=23.75 Aligned_cols=32 Identities=9% Similarity=0.068 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhh
Q 023713 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198 (278)
Q Consensus 166 p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~ 198 (278)
..|.+|||.. ++++..++......+.+.|+..
T Consensus 13 g~s~~eIA~~-l~is~~tV~~~~~~~~~kl~~~ 44 (61)
T 2jpc_A 13 GYTNHGISEK-LHISIKTVETHRMNMMRKLQVH 44 (61)
T ss_dssp SCCSHHHHHH-TCSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHH-hCCCHHHHHHHHHHHHHHHCCC
Confidence 4588999995 9999999999999999999864
No 114
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=67.50 E-value=1.8 Score=29.19 Aligned_cols=33 Identities=27% Similarity=0.690 Sum_probs=22.5
Q ss_pred CCCCCCCCCCCc-eeEeCCCCceEcCCCcccccc
Q 023713 3 DSYCADCKRLTE-VVFDHSAGDTICSECGLVLEA 35 (278)
Q Consensus 3 ~~~Cp~Cg~~~~-vv~D~~~G~~vC~~CG~Vl~e 35 (278)
...|-+||...+ .--...+|..+|..||+-..-
T Consensus 9 ~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~ 42 (66)
T 4gat_A 9 PTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKL 42 (66)
T ss_dssp SCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHH
T ss_pred CCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHH
Confidence 467999997422 222235788999999988753
No 115
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=66.97 E-value=2.8 Score=30.33 Aligned_cols=26 Identities=27% Similarity=0.714 Sum_probs=18.8
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCcccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVL 33 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl 33 (278)
..||.|+. .+..+ .|...|..|+.-+
T Consensus 33 ~~CP~Cq~--eL~~~--g~~~hC~~C~~~f 58 (101)
T 2jne_A 33 LHCPQCQH--VLDQD--NGHARCRSCGEFI 58 (101)
T ss_dssp CBCSSSCS--BEEEE--TTEEEETTTCCEE
T ss_pred ccCccCCC--cceec--CCEEECccccchh
Confidence 78999997 35554 5566688888754
No 116
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=66.96 E-value=3.4 Score=28.95 Aligned_cols=29 Identities=17% Similarity=0.457 Sum_probs=19.6
Q ss_pred CCCCCCCCCCCCCceeEeCCCCceEcCCCccccc
Q 023713 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (278)
Q Consensus 1 ~~~~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~ 34 (278)
|+ ..||.|+.+ +..| .+...|..||.-+.
T Consensus 1 M~-~~CP~C~~~--l~~~--~~~~~C~~C~~~~~ 29 (81)
T 2jrp_A 1 ME-ITCPVCHHA--LERN--GDTAHCETCAKDFS 29 (81)
T ss_dssp CC-CCCSSSCSC--CEEC--SSEEECTTTCCEEE
T ss_pred CC-CCCCCCCCc--cccC--CCceECccccccCC
Confidence 55 789999973 4443 44555888877654
No 117
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=66.86 E-value=9.7 Score=26.34 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhh
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~ 198 (278)
.+.|++|||.. +|++..++........+.|...
T Consensus 37 ~~~s~~EIA~~-lgis~~tV~~~~~ra~~kLr~~ 69 (87)
T 1tty_A 37 KPKTLEEVGQY-FNVTRERIRQIEVKALRKLRHP 69 (87)
T ss_dssp SCCCHHHHHHH-HTCCHHHHHHHHHHHHHHHBTT
T ss_pred CCCCHHHHHHH-HCCCHHHHHHHHHHHHHHHHHH
Confidence 67899999995 9999999999888888888643
No 118
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=66.51 E-value=24 Score=24.81 Aligned_cols=38 Identities=5% Similarity=-0.186 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHHH
Q 023713 153 AACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191 (278)
Q Consensus 153 AAclY~acR~~~~p~tl~eia~~~~~v~~~~i~~~~~~l 191 (278)
.+.-|+--...+-+.++.|+|+. +++++..|.+.+++.
T Consensus 6 ~i~~~i~~~~~~~~~~~~~lA~~-~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 6 LIQNIIEESYTDSQFTLSVLSEK-LDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHHTTCTTCCHHHHHHH-TTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCCHHHHHHH-HCcCHHHHHHHHHHH
Confidence 34445554444558999999995 999999999887764
No 119
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=65.99 E-value=2.9 Score=33.80 Aligned_cols=27 Identities=26% Similarity=0.673 Sum_probs=21.5
Q ss_pred CCCCC--CCCCCceeEeCCCCceEcCCCcccc
Q 023713 4 SYCAD--CKRLTEVVFDHSAGDTICSECGLVL 33 (278)
Q Consensus 4 ~~Cp~--Cg~~~~vv~D~~~G~~vC~~CG~Vl 33 (278)
..||. |++. |.+...|.+.|..|+...
T Consensus 44 ~aC~~~~CnKK---v~~~~~g~~~CekC~~~~ 72 (181)
T 1l1o_C 44 QACPTQDCNKK---VIDQQNGLYRCEKCDTEF 72 (181)
T ss_dssp EBCCSTTCCCB---CEEETTTEEEETTTTEEE
T ss_pred CCCCchhcCCc---cccCCCCeEECCCCCCcC
Confidence 36999 9973 446678999999999765
No 120
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=65.84 E-value=16 Score=24.93 Aligned_cols=32 Identities=9% Similarity=0.060 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhh
Q 023713 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198 (278)
Q Consensus 166 p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~ 198 (278)
..|.+|||+. ++++..++....+.+.+.|+..
T Consensus 36 g~s~~eIA~~-l~is~~tV~~~l~r~~~kL~~~ 67 (82)
T 1je8_A 36 GLPNKMIARR-LDITESTVKVHVKHMLKKMKLK 67 (82)
T ss_dssp TCCHHHHHHH-HTSCHHHHHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHH-HCcCHHHHHHHHHHHHHHHcCC
Confidence 3689999995 9999999999999999998764
No 121
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=65.66 E-value=2 Score=28.32 Aligned_cols=23 Identities=35% Similarity=0.892 Sum_probs=15.4
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCcccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVL 33 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl 33 (278)
..||+||.. . .-.-||.+||.-=
T Consensus 31 ~~c~~cGe~---~----~~H~vc~~CG~Y~ 53 (60)
T 3v2d_5 31 VPCPECKAM---K----PPHTVCPECGYYA 53 (60)
T ss_dssp EECTTTCCE---E----CTTSCCTTTCEET
T ss_pred eECCCCCCe---e----cceEEcCCCCcCC
Confidence 468888861 1 2367899999653
No 122
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=65.40 E-value=4.1 Score=32.58 Aligned_cols=28 Identities=21% Similarity=0.640 Sum_probs=18.3
Q ss_pred CCCCCCCCCCCceeEeCCCC----ceEcCCCccc
Q 023713 3 DSYCADCKRLTEVVFDHSAG----DTICSECGLV 32 (278)
Q Consensus 3 ~~~Cp~Cg~~~~vv~D~~~G----~~vC~~CG~V 32 (278)
...||.||.. ..+. ..+| ..+|..||.+
T Consensus 3 ~~~C~~CG~~-~~~~-~~~G~~~~~~~~~~~~~~ 34 (189)
T 3cng_A 3 MKFCSQCGGE-VILR-IPEGDTLPRYICPKCHTI 34 (189)
T ss_dssp CCBCTTTCCB-CEEE-CCTTCSSCEEEETTTTEE
T ss_pred cccCchhCCc-cccc-cccCCCCcceECCCCCCc
Confidence 4689999984 3232 2233 5699999943
No 123
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=65.09 E-value=1.8 Score=29.57 Aligned_cols=30 Identities=17% Similarity=0.527 Sum_probs=16.9
Q ss_pred CCCCCCCCCCceeEeC---CCCceEcCCCccccc
Q 023713 4 SYCADCKRLTEVVFDH---SAGDTICSECGLVLE 34 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~---~~G~~vC~~CG~Vl~ 34 (278)
..|-+||...+-.+-. ..| ++|.-||+-+.
T Consensus 9 ~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~ 41 (71)
T 2kae_A 9 FQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQR 41 (71)
T ss_dssp CCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHH
T ss_pred CcCCccCCCCCCccccCCCCCC-ccchHHHHHHH
Confidence 5677777643333332 444 67777776654
No 124
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=64.45 E-value=23 Score=25.14 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHH
Q 023713 151 IVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEF 190 (278)
Q Consensus 151 ~aAAclY~acR~~~~p~tl~eia~~~~~v~~~~i~~~~~~ 190 (278)
+..++=|+--...+.+.++.++|+. ++++...+.+.+++
T Consensus 5 i~~~~~~i~~~~~~~~~~~~~lA~~-~~~S~~~l~r~fk~ 43 (107)
T 2k9s_A 5 VREACQYISDHLADSNFDIASVAQH-VCLSPSRLSHLFRQ 43 (107)
T ss_dssp HHHHHHHHHHTSSCSSCCHHHHHHH-TTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHH-HCCCHHHHHHHHHH
Confidence 3444555554444478999999995 99999999988775
No 125
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=63.28 E-value=12 Score=25.48 Aligned_cols=31 Identities=32% Similarity=0.329 Sum_probs=26.7
Q ss_pred CCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Q 023713 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKHL 195 (278)
Q Consensus 164 ~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L 195 (278)
+-+.|..|||.. ++++..+|.+.+..|.+.=
T Consensus 29 ~~~~t~~eLA~~-Lgvs~~tV~~~L~~L~~~G 59 (77)
T 1qgp_A 29 GKATTAHDLSGK-LGTPKKEINRVLYSLAKKG 59 (77)
T ss_dssp SSCEEHHHHHHH-HCCCHHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHH-HCcCHHHHHHHHHHHHHCC
Confidence 357999999995 9999999999999997644
No 126
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=63.02 E-value=19 Score=23.89 Aligned_cols=33 Identities=6% Similarity=0.057 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhh
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~ 198 (278)
...|.+|||.. ++++..++......+.+.|+..
T Consensus 30 ~g~s~~eIA~~-l~is~~tV~~~~~r~~~kl~~~ 62 (79)
T 1x3u_A 30 AGLPNKSIAYD-LDISPRTVEVHRANVMAKMKAK 62 (79)
T ss_dssp TTCCHHHHHHH-TTSCHHHHHHHHHHHHHHTTCC
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHHHHHHHHcCC
Confidence 34688999995 9999999999999999998764
No 127
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=63.00 E-value=4.5 Score=30.67 Aligned_cols=32 Identities=22% Similarity=0.561 Sum_probs=27.0
Q ss_pred CCCCceEcCCCcccc--cccccccccchhhccCC
Q 023713 19 HSAGDTICSECGLVL--EAYSVDETSEWRIFANE 50 (278)
Q Consensus 19 ~~~G~~vC~~CG~Vl--~e~~id~~~ewr~f~~~ 50 (278)
.+.|.++|..||.-| .+.-+|.|.-|.+|.+.
T Consensus 16 ~~~GiY~C~~Cg~pLF~S~~KFdSG~GWPSF~~p 49 (124)
T 2kao_A 16 FEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTET 49 (124)
T ss_dssp CCCCEEEESSSCCCCCCTTTSCCCCCSSCCBSCC
T ss_pred CCCEEEEeCCCCCccccCcccccCCCCChhhCcc
Confidence 478999999999988 55567999999999853
No 128
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=62.91 E-value=4.8 Score=33.88 Aligned_cols=28 Identities=29% Similarity=0.583 Sum_probs=22.9
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCcc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGL 31 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~ 31 (278)
..|-.||.+....+++..|-.+|.+|..
T Consensus 151 ~~C~~cg~~~~~~fs~~~Gg~~c~~~~~ 178 (244)
T 1u5k_A 151 ARCARCGAPDPEHPDPLGGQLLCSKCAA 178 (244)
T ss_dssp SBCTTTCCBSCCEECTTTSSEECTTTCS
T ss_pred CccccCCCCCCCcEecccCEEECcccCC
Confidence 5799999854457889999999999964
No 129
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=62.90 E-value=21 Score=23.19 Aligned_cols=32 Identities=19% Similarity=0.149 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhh
Q 023713 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198 (278)
Q Consensus 166 p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~ 198 (278)
..|.+|||+. ++++..++....+.+.+.|+..
T Consensus 26 g~s~~eIA~~-l~is~~tV~~~~~~~~~kl~~~ 57 (74)
T 1fse_A 26 DKTTKEIASE-LFISEKTVRNHISNAMQKLGVK 57 (74)
T ss_dssp TCCHHHHHHH-HTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHH-HCCCHHHHHHHHHHHHHHHCCC
Confidence 3489999995 9999999999999999999864
No 130
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=62.70 E-value=3.1 Score=37.66 Aligned_cols=15 Identities=27% Similarity=0.505 Sum_probs=11.7
Q ss_pred eEcCCCccccccccc
Q 023713 24 TICSECGLVLEAYSV 38 (278)
Q Consensus 24 ~vC~~CG~Vl~e~~i 38 (278)
..|.+||.|..+...
T Consensus 54 ~~C~~Cg~v~~~~~~ 68 (416)
T 4e2x_A 54 GRCDSCEMVQLTEEV 68 (416)
T ss_dssp EEETTTCCEEESSCC
T ss_pred EECCCCCceeecCcC
Confidence 479999999876544
No 131
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=62.41 E-value=13 Score=27.00 Aligned_cols=41 Identities=10% Similarity=0.184 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhh
Q 023713 154 ACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEA 197 (278)
Q Consensus 154 AclY~acR~~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~ 197 (278)
.+.|++-+. ...||.+|+.. +|-|..++..+++++.+.+..
T Consensus 40 iAmYL~r~~--t~~Sl~~IG~~-fgRDHsTV~ha~~ki~~~~~~ 80 (101)
T 3pvv_A 40 IAMYLCREL--TDLSLPKIGQA-FGRDHTTVMYAQRKILSEMAE 80 (101)
T ss_dssp HHHHHHHHH--CCCCHHHHHHH-TTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hCCCHHHHHHH-HCCCHHHHHHHHHHHHHHHHh
Confidence 466775444 57789999995 889999999999999988864
No 132
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=62.28 E-value=2.6 Score=33.87 Aligned_cols=30 Identities=20% Similarity=0.562 Sum_probs=20.3
Q ss_pred CCCCCCCCC-CceeEe--CCCCceEcCCCcccc
Q 023713 4 SYCADCKRL-TEVVFD--HSAGDTICSECGLVL 33 (278)
Q Consensus 4 ~~Cp~Cg~~-~~vv~D--~~~G~~vC~~CG~Vl 33 (278)
..|+.|+++ +.++.| ...=.+.|..||..-
T Consensus 97 VlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~~ 129 (170)
T 2g2k_A 97 VLCPECENPETDLHVNPKKQTIGNSCKACGYRG 129 (170)
T ss_dssp HSCTTTSSSCEEEEEETTTTEEEEEETTTCCCC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccccCCcc
Confidence 369999995 344553 233456799999873
No 133
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=62.01 E-value=3.1 Score=31.57 Aligned_cols=31 Identities=23% Similarity=0.580 Sum_probs=26.8
Q ss_pred CCCceEcCCCcccc--cccccccccchhhccCC
Q 023713 20 SAGDTICSECGLVL--EAYSVDETSEWRIFANE 50 (278)
Q Consensus 20 ~~G~~vC~~CG~Vl--~e~~id~~~ewr~f~~~ 50 (278)
+.|.++|..||.-| .+.-+|.|.-|.+|.+.
T Consensus 17 e~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~~ 49 (124)
T 2kv1_A 17 EPGVYVCAKCSYELFSSHSKYAHSSPWPAFTET 49 (124)
T ss_dssp CCEEEEETTTCCBCCCTTSCCCCCSSSCCBSCC
T ss_pred CCEEEEecCCCCcccccCCcccCCCCCceeecc
Confidence 78999999999988 55678999999999754
No 134
>1vzi_A Desulfoferrodoxin; ferrocyanide, microspectrophotometry, redox states, photoreduction, dinuclear iron cluster, oxidoreductase; 1.15A {Desulfovibrio baarsii} SCOP: b.1.13.1 g.41.5.2 PDB: 1vzh_A* 1vzg_A 2ji1_A 2ji2_A 2ji3_A 1dfx_A
Probab=61.26 E-value=3.7 Score=31.27 Aligned_cols=29 Identities=21% Similarity=0.589 Sum_probs=20.0
Q ss_pred CCCCCCCCCCCceeEeCCCCceEcCCCccccc
Q 023713 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (278)
Q Consensus 3 ~~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~ 34 (278)
..+|+.||.. -.+.....|.++| ||.-++
T Consensus 7 fYkC~~CGni-vev~~~g~~~l~C--CG~~m~ 35 (126)
T 1vzi_A 7 VYKCEVCGNI-VEVLNGGIGELVC--CNQDMK 35 (126)
T ss_dssp EEECTTTCCE-EEEEECCSSCEEE--TTEECE
T ss_pred EEEcCCCCeE-EEEEcCCCcceec--CCcccc
Confidence 3579999972 2233667788888 787654
No 135
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=60.95 E-value=9.6 Score=26.79 Aligned_cols=31 Identities=19% Similarity=0.146 Sum_probs=28.0
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhh
Q 023713 167 RTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198 (278)
Q Consensus 167 ~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~ 198 (278)
.|.+|||.. ++++..++....+.+.+.|+..
T Consensus 45 ~s~~eIA~~-L~iS~~TV~~~~~~i~~Klgv~ 75 (90)
T 3ulq_B 45 FTNQEIADA-LHLSKRSIEYSLTSIFNKLNVG 75 (90)
T ss_dssp CCHHHHHHH-HTCCHHHHHHHHHHHHHHTTCS
T ss_pred CCHHHHHHH-HCcCHHHHHHHHHHHHHHHCCC
Confidence 478999995 9999999999999999999875
No 136
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=60.90 E-value=3.1 Score=23.61 Aligned_cols=14 Identities=29% Similarity=0.546 Sum_probs=11.0
Q ss_pred CCCceEcCCCcccc
Q 023713 20 SAGDTICSECGLVL 33 (278)
Q Consensus 20 ~~G~~vC~~CG~Vl 33 (278)
..|+..|..||.+-
T Consensus 2 k~gDW~C~~C~~~N 15 (32)
T 2lk0_A 2 KFEDWLCNKCCLNN 15 (32)
T ss_dssp CCSEEECTTTCCEE
T ss_pred CCCCCCcCcCcCCc
Confidence 46889999998773
No 137
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=60.89 E-value=26 Score=24.87 Aligned_cols=39 Identities=13% Similarity=0.014 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHHH
Q 023713 151 IVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191 (278)
Q Consensus 151 ~aAAclY~acR~~~~p~tl~eia~~~~~v~~~~i~~~~~~l 191 (278)
+..+.-|+--... .+.++.++|+. ++++...+.+.+++.
T Consensus 7 i~~~~~~i~~~~~-~~~~~~~lA~~-~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 7 IQNVLSYITEHFS-EGMSLKTLGND-FHINAVYLGQLFQKE 45 (108)
T ss_dssp HHHHHHHHHHHTT-SCCCHHHHHHH-HTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CCCCHHHHHHH-HCcCHHHHHHHHHHH
Confidence 4445556555544 48999999995 999999999887754
No 138
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=60.59 E-value=12 Score=24.32 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhh
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~ 198 (278)
...|.+|||.. +|++..++........+.|...
T Consensus 24 ~g~s~~eIA~~-lgis~~tV~~~~~ra~~kLr~~ 56 (68)
T 2p7v_B 24 TDYTLEEVGKQ-FDVTRERIRQIEAKALRKLRHP 56 (68)
T ss_dssp SCCCHHHHHHH-HTCCHHHHHHHHHHHHHGGGSC
T ss_pred CCCCHHHHHHH-HCcCHHHHHHHHHHHHHHHHHH
Confidence 46899999995 9999999999998888888643
No 139
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=60.57 E-value=3.9 Score=34.57 Aligned_cols=30 Identities=27% Similarity=0.658 Sum_probs=19.7
Q ss_pred CCCCCCCCCCce---eEeCCCCceEcCCCccccc
Q 023713 4 SYCADCKRLTEV---VFDHSAGDTICSECGLVLE 34 (278)
Q Consensus 4 ~~Cp~Cg~~~~v---v~D~~~G~~vC~~CG~Vl~ 34 (278)
..||+||+. .+ .-+..-.+..|.+|+.-.|
T Consensus 35 ~yCPnCG~~-~l~~f~nN~PVaDF~C~~C~EeyE 67 (257)
T 4esj_A 35 SYCPNCGNN-PLNHFENNRPVADFYCNHCSEEFE 67 (257)
T ss_dssp CCCTTTCCS-SCEEC----CCCEEECTTTCCEEE
T ss_pred CcCCCCCCh-hhhhccCCCcccccccCCcchhhe
Confidence 579999983 33 2223567899999986553
No 140
>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}
Probab=60.31 E-value=3.2 Score=30.60 Aligned_cols=32 Identities=25% Similarity=0.627 Sum_probs=26.9
Q ss_pred CCCCceEcCCCcccc--cccccccccchhhccCC
Q 023713 19 HSAGDTICSECGLVL--EAYSVDETSEWRIFANE 50 (278)
Q Consensus 19 ~~~G~~vC~~CG~Vl--~e~~id~~~ewr~f~~~ 50 (278)
.+.|.++|..||.-| .+.-+|.|.-|.+|.+.
T Consensus 9 ~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~p 42 (105)
T 3mao_A 9 FEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTET 42 (105)
T ss_dssp CCSEEEEETTTCCEEEEGGGEECCSSSSCEESCC
T ss_pred CCCEEEEcCCCCCccccCCcccCCCCCChhhccc
Confidence 468999999999988 55678999999999853
No 141
>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=60.04 E-value=1.7 Score=33.18 Aligned_cols=17 Identities=35% Similarity=0.780 Sum_probs=14.2
Q ss_pred eCCCCceEcCCCccccc
Q 023713 18 DHSAGDTICSECGLVLE 34 (278)
Q Consensus 18 D~~~G~~vC~~CG~Vl~ 34 (278)
+-.+|.++|.+||.+..
T Consensus 94 ~V~EG~L~Cp~cgr~yp 110 (125)
T 3q87_A 94 DVVEGSLRCDMCGLIYP 110 (125)
T ss_dssp EEEEEEEEETTTCCEEE
T ss_pred EEEEEEEECCCCCCEee
Confidence 44589999999999873
No 142
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=59.99 E-value=17 Score=25.09 Aligned_cols=30 Identities=33% Similarity=0.336 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHL 195 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L 195 (278)
.+.|..|||.. ++++..+|++.+..|.+.-
T Consensus 26 ~~~t~~eLA~~-Lgvsr~tV~~~L~~Le~~G 55 (81)
T 1qbj_A 26 KATTAHDLSGK-LGTPKKEINRVLYSLAKKG 55 (81)
T ss_dssp CCBCHHHHHHH-HTCCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHH-HCcCHHHHHHHHHHHHHCC
Confidence 57999999995 9999999999999997643
No 143
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.89 E-value=4.1 Score=32.26 Aligned_cols=30 Identities=20% Similarity=0.531 Sum_probs=20.5
Q ss_pred CCCCCCCCC-CceeEeCCC--CceEcCCCcccc
Q 023713 4 SYCADCKRL-TEVVFDHSA--GDTICSECGLVL 33 (278)
Q Consensus 4 ~~Cp~Cg~~-~~vv~D~~~--G~~vC~~CG~Vl 33 (278)
..|+.|+++ +.++.|... =.+.|..||..-
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~~ 136 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTIGNSCKACGYRG 136 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEEEEECSSSCCEE
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccCCCCCC
Confidence 479999995 344543233 456799999873
No 144
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=59.69 E-value=25 Score=28.72 Aligned_cols=30 Identities=13% Similarity=0.219 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 164 ~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
..|.|..+||+ .+|++..++.|..++|.+.
T Consensus 175 ~~~~t~~~iA~-~lG~sr~tvsR~l~~L~~~ 204 (250)
T 3e6c_C 175 TMPLSQKSIGE-ITGVHHVTVSRVLASLKRE 204 (250)
T ss_dssp ECCCCHHHHHH-HHTCCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHH-HhCCcHHHHHHHHHHHHHC
Confidence 36789999999 4999999999999999874
No 145
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=59.63 E-value=27 Score=24.91 Aligned_cols=41 Identities=12% Similarity=0.259 Sum_probs=34.3
Q ss_pred HHHHHHhcCC-CCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhhh
Q 023713 156 LYIACRQENK-PRTVKEFCSVAN-GTTKKEIGRAKEFIVKHLEA 197 (278)
Q Consensus 156 lY~acR~~~~-p~tl~eia~~~~-~v~~~~i~~~~~~l~~~L~~ 197 (278)
|..+|++.|. +.++..||.. + +-++.++...|+.|.+.+.-
T Consensus 44 IL~~cQ~~G~s~~tFa~iA~~-L~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 44 ILTMCQEQGAQPHTFSVISQQ-LGNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp HHHHHHHTTSCTTTHHHHHHH-HSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCChhHHHHHHHH-HccCCHHHHHHHHHHHHHHHHH
Confidence 4567888776 7899999985 6 68999999999999998864
No 146
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=59.21 E-value=6.9 Score=28.39 Aligned_cols=28 Identities=14% Similarity=0.215 Sum_probs=22.4
Q ss_pred CCCCCCCCC-CceeEeCCCCceEcCCCcc
Q 023713 4 SYCADCKRL-TEVVFDHSAGDTICSECGL 31 (278)
Q Consensus 4 ~~Cp~Cg~~-~~vv~D~~~G~~vC~~CG~ 31 (278)
..||-|+.. +++.+++..|.+.|-.||.
T Consensus 38 ~~CPfh~e~~pSf~V~~~k~~~~Cf~cg~ 66 (103)
T 1d0q_A 38 GLCPFHGEKTPSFSVSPEKQIFHCFGCGA 66 (103)
T ss_dssp ECCSSSCCSSCCEEEETTTTEEEETTTCC
T ss_pred EECCCCCCCCCcEEEEcCCCEEEECCCCC
Confidence 369999853 3678888899999999993
No 147
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=59.08 E-value=2.2 Score=28.44 Aligned_cols=34 Identities=29% Similarity=0.809 Sum_probs=21.1
Q ss_pred CCCCCCCCCCCceeE-eCCCCceEcCCCccccccc
Q 023713 3 DSYCADCKRLTEVVF-DHSAGDTICSECGLVLEAY 36 (278)
Q Consensus 3 ~~~Cp~Cg~~~~vv~-D~~~G~~vC~~CG~Vl~e~ 36 (278)
...|-+||...+-.+ ....|..+|.-||+-..-+
T Consensus 7 ~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~ 41 (63)
T 3dfx_A 7 GTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLH 41 (63)
T ss_dssp TCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHH
T ss_pred CCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHc
Confidence 356888886422222 2356778888888876533
No 148
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=58.95 E-value=14 Score=27.38 Aligned_cols=38 Identities=5% Similarity=-0.002 Sum_probs=30.1
Q ss_pred HHHHHHhcCCC-CCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 156 LYIACRQENKP-RTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 156 lY~acR~~~~p-~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
||.+....+-| .|..||++. ++++..++.+.++.|.+.
T Consensus 31 il~~L~~~~~~~~t~~eLa~~-l~~s~sTV~r~L~~L~~~ 69 (123)
T 3r0a_A 31 VMKSFLNEPDRWIDTDALSKS-LKLDVSTVQRSVKKLHEK 69 (123)
T ss_dssp HHHHHHHSTTCCEEHHHHHHH-HTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCcCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 33444456667 899999995 999999999999999753
No 149
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=58.77 E-value=7.4 Score=34.29 Aligned_cols=30 Identities=17% Similarity=0.445 Sum_probs=20.9
Q ss_pred CCCCCCCCCCceeEeCCCC-----------ceEcCCCcccc
Q 023713 4 SYCADCKRLTEVVFDHSAG-----------DTICSECGLVL 33 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G-----------~~vC~~CG~Vl 33 (278)
..||+||....+.+=.-+| -.+|.+||.-+
T Consensus 223 ~~C~~Cg~~~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~Yl 263 (309)
T 2fiy_A 223 IKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGYL 263 (309)
T ss_dssp TSCSSSCCCSCCEEECCCC-CCCSTTCSEEEEEETTTTEEE
T ss_pred cCCcCCCCCCCeeEEEecCccccCCCcceEEEEcccccchH
Confidence 5799999854554322222 57999999887
No 150
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=58.52 E-value=36 Score=24.32 Aligned_cols=39 Identities=10% Similarity=0.231 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHHH
Q 023713 151 IVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191 (278)
Q Consensus 151 ~aAAclY~acR~~~~p~tl~eia~~~~~v~~~~i~~~~~~l 191 (278)
+..+.-|+- .....+.++.++|.. ++++...|.+.+++.
T Consensus 9 i~~~~~~i~-~~~~~~~~~~~lA~~-~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 9 LTEAVSLME-ANIEEPLSTDDIAYY-VGVSRRQLERLFKQY 47 (113)
T ss_dssp HHHHHHHHH-TCSSSCCCHHHHHHH-HTSCHHHHHHHHHHH
T ss_pred HHHHHHHHH-hhhcCCCCHHHHHHH-HCcCHHHHHHHHHHH
Confidence 444444543 333567999999995 999999999887763
No 151
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=58.19 E-value=2.8 Score=29.31 Aligned_cols=23 Identities=26% Similarity=0.775 Sum_probs=13.0
Q ss_pred CCCCCCCCCCCCCceeEeCCCCceEcCCCcc
Q 023713 1 MADSYCADCKRLTEVVFDHSAGDTICSECGL 31 (278)
Q Consensus 1 ~~~~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~ 31 (278)
|....|.+|+. +.+.+ .|.+||.
T Consensus 21 m~~rAC~~C~~----v~~~d----~CPnCgs 43 (81)
T 3p8b_A 21 MSEKACRHCHY----ITSED----RCPVCGS 43 (81)
T ss_dssp -CCEEETTTCB----EESSS----SCTTTCC
T ss_pred hhHHHHhhCCC----ccCCC----CCCCCCC
Confidence 44456888875 22221 3888876
No 152
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=57.59 E-value=19 Score=28.19 Aligned_cols=29 Identities=7% Similarity=0.171 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
.|.|..|||+ .+|++..++.|..++|.+.
T Consensus 138 ~~~t~~~lA~-~lg~sr~tvsR~l~~L~~~ 166 (195)
T 3b02_A 138 VTVSHEEIAD-ATASIRESVSKVLADLRRE 166 (195)
T ss_dssp EECCHHHHHH-TTTSCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHH-HhCCCHHHHHHHHHHHHHC
Confidence 5789999999 5999999999999999864
No 153
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=57.50 E-value=41 Score=24.34 Aligned_cols=38 Identities=11% Similarity=-0.010 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHH
Q 023713 151 IVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEF 190 (278)
Q Consensus 151 ~aAAclY~acR~~~~p~tl~eia~~~~~v~~~~i~~~~~~ 190 (278)
+..+.-|+--. ...+.++.++|.. ++++...|.+.+++
T Consensus 9 ~~~~~~~i~~~-~~~~~~~~~lA~~-~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 9 RTRVCTVINNN-IAHEWTLARIASE-LLMSPSLLKKKLRE 46 (120)
T ss_dssp HHHHHHHHHTS-TTSCCCHHHHHHH-TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHh-ccCCCCHHHHHHH-HCcCHHHHHHHHHH
Confidence 34444444333 2448999999995 99999999888764
No 154
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=56.64 E-value=34 Score=27.04 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
.|.|..+||+ .+|++..++.|..++|.+.
T Consensus 168 ~~~t~~~lA~-~lg~sr~tvsR~l~~L~~~ 196 (220)
T 3dv8_A 168 LKITHETIAN-HLGSHREVITRMLRYFQVE 196 (220)
T ss_dssp ECCCHHHHHH-HHTCCHHHHHHHHHHHHHT
T ss_pred ecCCHHHHHH-HhCCCHHHHHHHHHHHHHC
Confidence 5789999999 5999999999999999874
No 155
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=56.62 E-value=4.3 Score=23.19 Aligned_cols=13 Identities=46% Similarity=0.721 Sum_probs=10.7
Q ss_pred CCCceEcCCCccc
Q 023713 20 SAGDTICSECGLV 32 (278)
Q Consensus 20 ~~G~~vC~~CG~V 32 (278)
..|+.+|..||.+
T Consensus 3 ~~gDW~C~~C~~~ 15 (33)
T 2k1p_A 3 SANDWQCKTCSNV 15 (33)
T ss_dssp SSSSCBCSSSCCB
T ss_pred CCCCcccCCCCCc
Confidence 4688999999877
No 156
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=56.53 E-value=3 Score=32.31 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=18.6
Q ss_pred CceeEeCCCCceEcCCCcccccc
Q 023713 13 TEVVFDHSAGDTICSECGLVLEA 35 (278)
Q Consensus 13 ~~vv~D~~~G~~vC~~CG~Vl~e 35 (278)
..+..+...+...|.+||...+-
T Consensus 60 A~L~i~~~p~~~~C~~CG~~~~~ 82 (139)
T 3a43_A 60 AEIEFVEEEAVFKCRNCNYEWKL 82 (139)
T ss_dssp CEEEEEEECCEEEETTTCCEEEG
T ss_pred CEEEEEecCCcEECCCCCCEEec
Confidence 35777788899999999998753
No 157
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=56.33 E-value=3.8 Score=29.60 Aligned_cols=23 Identities=22% Similarity=0.767 Sum_probs=16.9
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCcc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGL 31 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~ 31 (278)
..||.||. ...=. -...|..||+
T Consensus 17 ~lCrRCG~-~sfH~----qK~~CgkCGY 39 (97)
T 2zkr_2 17 TLCRRCGS-KAYHL----QKSTCGKCGY 39 (97)
T ss_dssp ECCTTTCS-SCEET----TSCCBTTTCT
T ss_pred CcCCCCCC-ccCcC----ccccCcccCC
Confidence 36999998 44322 2669999998
No 158
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=56.26 E-value=27 Score=24.95 Aligned_cols=32 Identities=19% Similarity=0.129 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhh
Q 023713 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198 (278)
Q Consensus 166 p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~ 198 (278)
..+.+|||+. ++++..++......+.+.|+..
T Consensus 49 G~s~~EIA~~-L~iS~~TV~~~l~ri~~KLgv~ 80 (99)
T 1p4w_A 49 GFLVTEIAKK-LNRSIKTISSQKKSAMMKLGVD 80 (99)
T ss_dssp TCCHHHHHHH-HTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHH-HCcCHHHHHHHHHHHHHHHCCC
Confidence 3578999995 9999999999999999999875
No 159
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=56.05 E-value=6.6 Score=27.16 Aligned_cols=29 Identities=17% Similarity=0.613 Sum_probs=21.7
Q ss_pred CCCCCC--CCCCCceeEeCCCCceEcC-----CCcccc
Q 023713 3 DSYCAD--CKRLTEVVFDHSAGDTICS-----ECGLVL 33 (278)
Q Consensus 3 ~~~Cp~--Cg~~~~vv~D~~~G~~vC~-----~CG~Vl 33 (278)
..+||. |+. .++.+.....+.|. .||...
T Consensus 25 ~~~CP~p~C~~--~v~~~~~~~~v~C~~~~~~~C~~~F 60 (80)
T 2jmo_A 25 GVLCPRPGCGA--GLLPEPDQRKVTCEGGNGLGCGFAF 60 (80)
T ss_dssp SCCCCSSSCCC--CCCCCSCTTSBCTTSSSTTCCSCCE
T ss_pred cEECCCCCCCc--ccEECCCCCcCCCCCCCCCCCCCee
Confidence 467998 986 35566667778898 898776
No 160
>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}
Probab=55.59 E-value=4.9 Score=31.27 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=26.8
Q ss_pred CCCCceEcCCCcccc--cccccccccchhhccCC
Q 023713 19 HSAGDTICSECGLVL--EAYSVDETSEWRIFANE 50 (278)
Q Consensus 19 ~~~G~~vC~~CG~Vl--~e~~id~~~ewr~f~~~ 50 (278)
.+.|.++|..||.-| .+.-+|.|.-|.+|.+.
T Consensus 33 ~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~p 66 (143)
T 2l1u_A 33 KETGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEA 66 (143)
T ss_dssp CCCEEEEESSSSCEEEEGGGBCTTTTCCSBBSSC
T ss_pred cCCeEEEeCCCCCeeecCcccccCCCCChhhchh
Confidence 478999999999887 55678899999999853
No 161
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=55.54 E-value=10 Score=29.86 Aligned_cols=44 Identities=16% Similarity=0.202 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 149 EAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 149 ~~~aAAclY~acR~~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
+.-.-+.+|+|.. .+.|.|..+||+. .+++...|++.+..|.+.
T Consensus 12 ~yAlr~l~~La~~-~~~~~s~~~IA~~-~~is~~~l~kil~~L~~a 55 (162)
T 3k69_A 12 SVAVHSILYLDAH-RDSKVASRELAQS-LHLNPVMIRNILSVLHKH 55 (162)
T ss_dssp HHHHHHHHHHHTT-TTSCBCHHHHHHH-HTSCGGGTHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCCcCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 4445566777754 3678999999994 999999999999999874
No 162
>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=55.38 E-value=5.1 Score=31.44 Aligned_cols=32 Identities=28% Similarity=0.510 Sum_probs=27.0
Q ss_pred CCCCceEcCCCcccc--cccccccccchhhccCC
Q 023713 19 HSAGDTICSECGLVL--EAYSVDETSEWRIFANE 50 (278)
Q Consensus 19 ~~~G~~vC~~CG~Vl--~e~~id~~~ewr~f~~~ 50 (278)
.+.|.++|..||.-| .+.-+|.|.-|.+|.+.
T Consensus 57 ~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~p 90 (151)
T 2k8d_A 57 HDDGIYRCICCGTDLFDSETKFDSGTGWPSFYDV 90 (151)
T ss_dssp CSCSEEEETTTTEEEEEGGGSCCSTTCCSEESCC
T ss_pred CCCEEEEecCCCCcccCCcccccCCCCCcccCcc
Confidence 578999999999987 55668899999999854
No 163
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=55.26 E-value=19 Score=23.74 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLE 196 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~ 196 (278)
.+.|..|||.. +|++..++........+.|.
T Consensus 29 ~~~s~~eIA~~-l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 29 REHTLEEVGAY-FGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCCCHHHHHHH-HTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHH-HCCCHHHHHHHHHHHHHHHH
Confidence 57899999995 99999999988777777776
No 164
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=55.25 E-value=18 Score=27.58 Aligned_cols=44 Identities=11% Similarity=0.090 Sum_probs=35.0
Q ss_pred CcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Q 023713 146 RNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193 (278)
Q Consensus 146 r~~~~~aAAclY~acR~~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~ 193 (278)
.+.+.-.-+.+|+|-+ .+ + |..|||+. .+++...+.+.+..|.+
T Consensus 6 ~~~~yAl~~L~~La~~-~~-~-s~~~IA~~-~~i~~~~l~kIl~~L~~ 49 (145)
T 1xd7_A 6 SRLAVAIHILSLISMD-EK-T-SSEIIADS-VNTNPVVVRRMISLLKK 49 (145)
T ss_dssp CHHHHHHHHHHHHHTC-SC-C-CHHHHHHH-HTSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CC-C-CHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 3445666777888754 34 5 99999994 99999999999999986
No 165
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=55.04 E-value=25 Score=27.80 Aligned_cols=85 Identities=12% Similarity=0.208 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhhhhc--------ccccc-cCCCCHHHHHHHH
Q 023713 149 EAIVAACLYIACRQENKPRTVKEFCSVANG--TTKKEIGRAKEFIVKHLEAEM--------GQSVE-MGTIHASDYLRRF 217 (278)
Q Consensus 149 ~~~aAAclY~acR~~~~p~tl~eia~~~~~--v~~~~i~~~~~~l~~~L~~~~--------~~~~~-~~~~~p~~~i~r~ 217 (278)
..++=|.||.+ +.|+++.+++.+ ++ ++..++......|...+.-.. +.... ....+-.+||.++
T Consensus 9 ~~~iEAlLf~~----~~pvs~~~La~~-~~~~~~~~~v~~~l~~L~~~y~~~~rg~~l~~v~~gy~l~t~~~~~~~v~~~ 83 (162)
T 1t6s_A 9 LRSLEALIFSS----EEPVNLQTLSQI-TAHKFTPSELQEAVDELNRDYEATGRTFRIHAIAGGYRFLTEPEFADLVRQL 83 (162)
T ss_dssp HHHHHHHHHHC----SSCBCHHHHHHH-TTCCCCHHHHHHHHHHHHHHHHHHTCSEEEEEETTEEEEEECGGGHHHHHHH
T ss_pred HHHHHHHHHHc----CCCCCHHHHHHH-hCcCCCHHHHHHHHHHHHHHhhhCCCCEEEEEECCEEEEEEcHHHHHHHHHH
Confidence 35666788875 789999999995 88 999999999999988775221 01111 1123456788888
Q ss_pred HhhcCCCHHHHHHHHHHHHHhh
Q 023713 218 CSNLGMTNQAVKAAQEAVQKSE 239 (278)
Q Consensus 218 ~~~L~l~~~v~~~A~~i~~~~~ 239 (278)
...= -+....+.|.+++..+.
T Consensus 84 ~~~~-~~~~LS~aaLEtLaiIa 104 (162)
T 1t6s_A 84 LAPV-IQRRLSRSMLEVLAVVA 104 (162)
T ss_dssp HSCH-HHHHHHHHHHHHHHHHH
T ss_pred hccc-ccCccCHHHHHHHHHHH
Confidence 7421 11234555555555443
No 166
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=54.81 E-value=31 Score=27.81 Aligned_cols=29 Identities=7% Similarity=0.100 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
.|.|..|||+ .+|++..++.|..++|.+.
T Consensus 185 ~~~t~~~lA~-~lG~sr~tvsR~l~~l~~~ 213 (232)
T 1zyb_A 185 FKVKMDDLAR-CLDDTRLNISKTLNELQDN 213 (232)
T ss_dssp EECCHHHHHH-HHTSCHHHHHHHHHHHHHT
T ss_pred ecCCHHHHHH-HhCCChhHHHHHHHHHHHC
Confidence 5789999999 4999999999999999764
No 167
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=54.34 E-value=28 Score=23.38 Aligned_cols=29 Identities=10% Similarity=-0.020 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
-|.+..|||+. ++++..++.+.++.|.+.
T Consensus 13 ~~~s~~eLa~~-lgvs~~tv~r~L~~L~~~ 41 (81)
T 2htj_A 13 NGGKTAEIAEA-LAVTDYQARYYLLLLEKA 41 (81)
T ss_dssp CCCCHHHHHHH-HTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 46899999995 999999999999999764
No 168
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=54.30 E-value=45 Score=26.63 Aligned_cols=30 Identities=13% Similarity=0.046 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 164 ~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
..|.|..+||+ .+|++..++.|..++|.+.
T Consensus 178 ~~~~t~~~lA~-~lg~sr~tvsR~l~~l~~~ 207 (232)
T 2gau_A 178 SIYLSREELAT-LSNMTVSNAIRTLSTFVSE 207 (232)
T ss_dssp SCCCCHHHHHH-HTTSCHHHHHHHHHHHHHT
T ss_pred EcccCHHHHHH-HhCCCHHHHHHHHHHHHHC
Confidence 36789999999 5999999999999999764
No 169
>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A
Probab=54.23 E-value=4.7 Score=32.05 Aligned_cols=32 Identities=22% Similarity=0.443 Sum_probs=26.8
Q ss_pred CCCCceEcCCCcccc--cccccccccchhhccCC
Q 023713 19 HSAGDTICSECGLVL--EAYSVDETSEWRIFANE 50 (278)
Q Consensus 19 ~~~G~~vC~~CG~Vl--~e~~id~~~ewr~f~~~ 50 (278)
.+.|.++|..||.-| .+.-+|.|.-|.+|.+.
T Consensus 69 ~~~GiY~C~~Cg~pLF~S~~KFdSGcGWPSF~~p 102 (164)
T 3cxk_A 69 EDAGIYHCVVCGTALFESGAKYHSGCGWPSYFKP 102 (164)
T ss_dssp CCSEEEEETTTCCEEEEGGGBCCCCSSSCEESSC
T ss_pred CCCeEEEccCCCccccCCchhccCCCCCcccCcc
Confidence 468999999999987 55567899999999854
No 170
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=53.36 E-value=25 Score=28.66 Aligned_cols=30 Identities=13% Similarity=0.133 Sum_probs=26.7
Q ss_pred CCCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 164 ~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
..|.|..|||+ .+|++..++.|..++|.+.
T Consensus 191 ~~~lt~~~lA~-~lG~sr~tvsR~l~~L~~~ 220 (243)
T 3la7_A 191 DLKLSHQAIAE-AIGSTRVTVTRLLGDLREK 220 (243)
T ss_dssp CSCCCHHHHHH-HHTCCHHHHHHHHHHHHHT
T ss_pred eccCCHHHHHH-HHCCcHHHHHHHHHHHHHC
Confidence 46789999999 5999999999999999864
No 171
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=53.34 E-value=5 Score=31.25 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=27.0
Q ss_pred CCCCceEcCCCcccc--cccccccccchhhccCC
Q 023713 19 HSAGDTICSECGLVL--EAYSVDETSEWRIFANE 50 (278)
Q Consensus 19 ~~~G~~vC~~CG~Vl--~e~~id~~~ewr~f~~~ 50 (278)
.+.|.++|..||.-| .+.-+|.|.-|.+|.+.
T Consensus 38 ~~~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~p 71 (144)
T 3e0o_A 38 KEEGLYVDIVSGKPLFTSKDKFDSQCGWPSFTKP 71 (144)
T ss_dssp CCSEEEEETTTCCEEEETTTBCCCTTSSCEESCC
T ss_pred CCCEEEEeCCCCcccccCcccccCCCCCcccCch
Confidence 478999999999988 55678999999999853
No 172
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=53.04 E-value=38 Score=23.99 Aligned_cols=71 Identities=7% Similarity=0.002 Sum_probs=40.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCC-CHHHHHHHHHHH
Q 023713 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT-TKKEIGRAKEFI 191 (278)
Q Consensus 113 I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~gr~~~~~aAAclY~acR~~~~p~tl~eia~~~~~v-~~~~i~~~~~~l 191 (278)
|.++|+.++++.....+ +|++........=....-+-.|+-++. ....++.|||.. .|. +...+.+.|++.
T Consensus 24 ~~~lA~~~~~S~~~l~r---~fk~~~G~s~~~~~~~~Rl~~A~~lL~----~~~~si~~IA~~-~Gf~~~s~F~r~Fk~~ 95 (108)
T 3oou_A 24 LKTLGNDFHINAVYLGQ---LFQKEMGEHFTDYLNRYRVNYAKEELL----QTKDNLTIIAGK-SGYTDMAYFYRQFKKH 95 (108)
T ss_dssp HHHHHHHHTSCHHHHHH---HHHHHHSSCHHHHHHHHHHHHHHHHHH----HCCCCHHHHHHH-TTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHH---HHHHHHCcCHHHHHHHHHHHHHHHHHH----cCCCCHHHHHHH-cCCCChHHHHHHHHHH
Confidence 67888889998655444 666664332110001112223333322 245689999984 776 677777777653
No 173
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=52.47 E-value=18 Score=25.47 Aligned_cols=31 Identities=16% Similarity=0.061 Sum_probs=27.8
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhh
Q 023713 167 RTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198 (278)
Q Consensus 167 ~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~ 198 (278)
.|.+|||.. ++++..++...+..+.+.|+..
T Consensus 43 ~s~~eIA~~-l~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 43 LTNKQIADR-MFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp CCHHHHHHH-HTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHH-HCcCHHHHHHHHHHHHHHHcCC
Confidence 478999995 9999999999999999999865
No 174
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A
Probab=52.28 E-value=5.1 Score=31.29 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=26.6
Q ss_pred CCCCceEcCCCcccc--cccccccccchhhccC
Q 023713 19 HSAGDTICSECGLVL--EAYSVDETSEWRIFAN 49 (278)
Q Consensus 19 ~~~G~~vC~~CG~Vl--~e~~id~~~ewr~f~~ 49 (278)
.+.|.++|..||.-| .+.-+|.|.-|.+|.+
T Consensus 39 ~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~ 71 (146)
T 3hcg_A 39 FKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTR 71 (146)
T ss_dssp CCSEEEEETTTCCEEEEGGGEECCSSSSCEESS
T ss_pred CCCEEEEecCCCcccccCcccccCCCCChhhcc
Confidence 478999999999988 5567899999999985
No 175
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=51.97 E-value=39 Score=27.10 Aligned_cols=30 Identities=13% Similarity=0.084 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 164 ~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
..|.|..+||+ .+|++..++.|..++|.+.
T Consensus 176 ~l~~t~~~iA~-~lg~sr~tvsR~l~~L~~~ 205 (237)
T 3fx3_A 176 TLPYDKMLIAG-RLGMKPESLSRAFSRLKAA 205 (237)
T ss_dssp ECCSCTHHHHH-HTTCCHHHHHHHHHHHGGG
T ss_pred EecCCHHHHHH-HhCCCHHHHHHHHHHHHHC
Confidence 47888999999 5999999999999999754
No 176
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=51.55 E-value=23 Score=24.47 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhh
Q 023713 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198 (278)
Q Consensus 166 p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~ 198 (278)
..|.+|||.. ++++..++......+.+.|+..
T Consensus 44 g~s~~eIA~~-l~is~~tV~~~l~r~~~kL~~~ 75 (91)
T 2rnj_A 44 GYSNQEIASA-SHITIKTVKTHVSNILSKLEVQ 75 (91)
T ss_dssp TCCTTHHHHH-HTCCHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHH-HCcCHHHHHHHHHHHHHHHCCC
Confidence 4688999995 9999999999999999999864
No 177
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=51.43 E-value=4.9 Score=31.64 Aligned_cols=31 Identities=29% Similarity=0.544 Sum_probs=26.6
Q ss_pred CCCCceEcCCCcccc--cccccccccchhhccC
Q 023713 19 HSAGDTICSECGLVL--EAYSVDETSEWRIFAN 49 (278)
Q Consensus 19 ~~~G~~vC~~CG~Vl--~e~~id~~~ewr~f~~ 49 (278)
.+.|.++|..||.-| .+.-+|.|.-|-+|.+
T Consensus 46 ~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~ 78 (154)
T 3hcj_A 46 KLDGVYTCRLCGLPLFRSNAKFDSGTGWPSFFA 78 (154)
T ss_dssp CSSEEEEETTTCCEEEEECTTCCCCTTSSTTEE
T ss_pred CCCEEEEccCCCCccccCcccccCCCCCccccc
Confidence 578999999999988 5567899999999985
No 178
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=50.97 E-value=33 Score=26.78 Aligned_cols=29 Identities=17% Similarity=0.231 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
.|.|..+||+ .+|++..++.|..++|.+.
T Consensus 163 ~~~t~~~lA~-~lg~sr~tvsR~l~~l~~~ 191 (207)
T 2oz6_A 163 IKITRQEIGR-IVGCSREMVGRVLKSLEEQ 191 (207)
T ss_dssp EECCHHHHHH-HHTSCHHHHHHHHHHHHHT
T ss_pred cccCHHHHHH-HhCCCHHHHHHHHHHHHHC
Confidence 5789999999 4999999999999999864
No 179
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=50.62 E-value=38 Score=27.07 Aligned_cols=45 Identities=11% Similarity=0.219 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHh--------cCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 149 EAIVAACLYIACRQ--------ENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 149 ~~~aAAclY~acR~--------~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
+-++...+.++-+. -..|.|..+||+ .+|++..++.|..++|.+.
T Consensus 150 ~Rl~~~L~~~~~~~~~~~~~~~~~~~~t~~~iA~-~lg~sr~tvsR~l~~L~~~ 202 (231)
T 3e97_A 150 AALTHVFANLYRQRLAAGVPQPEVLPLGTQDIMA-RTSSSRETVSRVLKRLEAH 202 (231)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSTTEECCCHHHHHH-HHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCCCceEecCCCHHHHHH-HhCCcHHHHHHHHHHHHHC
Confidence 45555555555442 346789999999 5999999999999999864
No 180
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=50.36 E-value=6.5 Score=32.51 Aligned_cols=28 Identities=14% Similarity=0.369 Sum_probs=20.3
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCccccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~ 34 (278)
..|++||.... .......+|..||.+..
T Consensus 11 ~~Cw~C~~~~~---~~~~~~~fC~~c~~~q~ 38 (207)
T 3bvo_A 11 PRCWNCGGPWG---PGREDRFFCPQCRALQA 38 (207)
T ss_dssp CBCSSSCCBCC---SSCSCCCBCTTTCCBCC
T ss_pred CCCCCCCCCcc---cccccccccccccccCC
Confidence 57999997311 12456899999998874
No 181
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=50.25 E-value=31 Score=25.25 Aligned_cols=38 Identities=11% Similarity=-0.011 Sum_probs=29.7
Q ss_pred HHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 156 LYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 156 lY~acR~~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
+++..+..+.|.++.|++.. ++++..++.+.++.|.+.
T Consensus 40 L~~l~~~~~~~~~~~ela~~-l~~~~~tvs~~l~~Le~~ 77 (141)
T 3bro_A 40 IDYLSRNKNKEVLQRDLESE-FSIKSSTATVLLQRMEIK 77 (141)
T ss_dssp HHHHHHTTTSCCBHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCcCHHHHHHH-HCCCcchHHHHHHHHHHC
Confidence 33333444458999999995 999999999999999864
No 182
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=50.22 E-value=26 Score=27.89 Aligned_cols=29 Identities=17% Similarity=0.078 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
.|.|..|||+ .+|++..++.|..++|.+.
T Consensus 166 ~~~t~~~lA~-~lg~sr~tvsR~l~~l~~~ 194 (220)
T 2fmy_A 166 LGLNTEEIAL-MLGTTRQTVSVLLNDFKKM 194 (220)
T ss_dssp CSSCHHHHHH-HHTSCHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHH-HhCCcHHHHHHHHHHHHHC
Confidence 6899999999 5999999999999999764
No 183
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=50.20 E-value=9 Score=35.27 Aligned_cols=28 Identities=21% Similarity=0.490 Sum_probs=21.9
Q ss_pred CCCCC--CCCCCceeEeCCCCceEcCCCccccc
Q 023713 4 SYCAD--CKRLTEVVFDHSAGDTICSECGLVLE 34 (278)
Q Consensus 4 ~~Cp~--Cg~~~~vv~D~~~G~~vC~~CG~Vl~ 34 (278)
..||. |++. +.+...|.+.|..||...+
T Consensus 309 ~aC~~~~C~kk---v~~~~~g~~~C~~C~~~~~ 338 (444)
T 4gop_C 309 TACASEGCNKK---VNLDHENNWRCEKCDRSYA 338 (444)
T ss_dssp EECCSTTCCCB---EEECTTSCEEETTTTEEES
T ss_pred ccCCcccCCCc---cccCCCccEECCCCCCcCc
Confidence 35999 9973 4456789999999998763
No 184
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=49.07 E-value=23 Score=24.51 Aligned_cols=33 Identities=12% Similarity=0.272 Sum_probs=27.9
Q ss_pred HhcCCCCCHHHHHHHHcCCCHHH-HHHHHHHHHHH
Q 023713 161 RQENKPRTVKEFCSVANGTTKKE-IGRAKEFIVKH 194 (278)
Q Consensus 161 R~~~~p~tl~eia~~~~~v~~~~-i~~~~~~l~~~ 194 (278)
..++.+.++.||+.. ++++..+ +.+.++.|.+.
T Consensus 25 ~~~~~~~t~~eLa~~-l~is~~t~vs~~l~~Le~~ 58 (95)
T 2pg4_A 25 EKKGYEPSLAEIVKA-SGVSEKTFFMGLKDRLIRA 58 (95)
T ss_dssp HHTTCCCCHHHHHHH-HCCCHHHHHTTHHHHHHHT
T ss_pred HhcCCCCCHHHHHHH-HCCCchHHHHHHHHHHHHC
Confidence 345557999999995 9999999 99999999764
No 185
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=49.04 E-value=27 Score=27.41 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
.|.|..+||+ .+|++..++.|..++|.+.
T Consensus 166 ~~~t~~~iA~-~lg~sr~tvsR~l~~L~~~ 194 (210)
T 3ryp_A 166 IKITRQEIGQ-IVGCSRETVGRILKMLEDQ 194 (210)
T ss_dssp EECCHHHHHH-HHTCCHHHHHHHHHHHHHT
T ss_pred eccCHHHHHH-HhCCcHHHHHHHHHHHHHC
Confidence 4789999999 5999999999999999764
No 186
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=48.61 E-value=6.9 Score=29.44 Aligned_cols=33 Identities=18% Similarity=0.411 Sum_probs=22.1
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCccccccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAY 36 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~e~ 36 (278)
..||.||+.+.+-.........|..||.-+.+.
T Consensus 6 ~~c~~c~~~n~~p~~~~~~~~~~~~~~~~~~~~ 38 (148)
T 3p2a_A 6 TVCTACMATNRLPEERIDDGAKCGRCGHSLFDG 38 (148)
T ss_dssp EECTTTCCEEEEESSCSCSCCBCTTTCCBTTCC
T ss_pred EECcccccccCCCCcccccCCcchhcCCccccC
Confidence 469999985444444455566799999877544
No 187
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=48.59 E-value=23 Score=22.63 Aligned_cols=31 Identities=16% Similarity=0.012 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhh
Q 023713 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEA 197 (278)
Q Consensus 166 p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~ 197 (278)
..|..|||.. +|++..++.+......+.|.-
T Consensus 31 g~s~~eIA~~-lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 31 GLSYADAAAV-CGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp CCCHHHHHHH-HTSCHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHH-HCcCHHHHHHHHHHHHHHHHH
Confidence 4689999995 999999999888888777753
No 188
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=48.54 E-value=31 Score=25.55 Aligned_cols=38 Identities=8% Similarity=0.089 Sum_probs=29.9
Q ss_pred CCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHH
Q 023713 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRR 216 (278)
Q Consensus 164 ~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r 216 (278)
..+.++.+||.. +|++...+.+.|++ .+|+ .|.+|+.+
T Consensus 91 ~~~~sl~~lA~~-~g~S~~~f~r~Fk~---~~G~-----------tp~~y~~~ 128 (133)
T 1u8b_A 91 ETPVTLEALADQ-VAMSPFHLHRLFKA---TTGM-----------TPKAWQQA 128 (133)
T ss_dssp SSCCCHHHHHHH-HTSCHHHHHHHHHH---HTSS-----------CHHHHHHH
T ss_pred cCCCCHHHHHHH-HCcCHHHHHHHHHH---HHCc-----------CHHHHHHH
Confidence 567999999995 99999999998776 4443 47787765
No 189
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=48.17 E-value=46 Score=24.43 Aligned_cols=42 Identities=14% Similarity=0.103 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHHH
Q 023713 148 QEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191 (278)
Q Consensus 148 ~~~~aAAclY~acR~~~~p~tl~eia~~~~~v~~~~i~~~~~~l 191 (278)
...+..+.-|+-- .-..+.++.++|+. ++++...|.+.+++.
T Consensus 10 ~~~i~~~~~~i~~-~~~~~~sl~~lA~~-~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 10 AITIHSILDWIED-NLESPLSLEKVSER-SGYSKWHLQRMFKKE 51 (129)
T ss_dssp HHHHHHHHHHHHT-TTTSCCCCHHHHHH-SSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-ccCCCCCHHHHHHH-HCcCHHHHHHHHHHH
Confidence 3344444555443 33556999999995 999999999887764
No 190
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=47.42 E-value=8.4 Score=25.91 Aligned_cols=28 Identities=25% Similarity=0.554 Sum_probs=19.0
Q ss_pred CCCCCCCCCCC----ceeEeCCCCceEcCCCccc
Q 023713 3 DSYCADCKRLT----EVVFDHSAGDTICSECGLV 32 (278)
Q Consensus 3 ~~~Cp~Cg~~~----~vv~D~~~G~~vC~~CG~V 32 (278)
+..|.-||... .+|. ..|..||.+|=..
T Consensus 18 ~~~CSFCGK~e~eV~~LIa--GpgvyICdeCI~~ 49 (67)
T 1ovx_A 18 LLYCSFCGKSQHEVRKLIA--GPSVYICDECVDL 49 (67)
T ss_dssp CCCCTTTCCCTTTSSSEEE--CSSCEEEHHHHHH
T ss_pred CcEecCCCCCHHHHcccCC--CCCCChhHHHHHH
Confidence 46899999642 3343 3478999998544
No 191
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=47.35 E-value=23 Score=24.51 Aligned_cols=29 Identities=10% Similarity=0.213 Sum_probs=22.2
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Q 023713 167 RTVKEFCSVANGTTKKEIGRAKEFIVKHLE 196 (278)
Q Consensus 167 ~tl~eia~~~~~v~~~~i~~~~~~l~~~L~ 196 (278)
.|.+|||.. +|++..++...+.+..+.|.
T Consensus 54 ~s~~eIA~~-lgis~~tV~~~l~ra~~~Lr 82 (92)
T 3hug_A 54 WSTAQIATD-LGIAEGTVKSRLHYAVRALR 82 (92)
T ss_dssp CCHHHHHHH-HTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HCcCHHHHHHHHHHHHHHHH
Confidence 579999995 99999888876665555543
No 192
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=47.22 E-value=9.3 Score=23.74 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=15.0
Q ss_pred CCCCCCCCCCCCCceeEeCCCCceEcCCCcccc
Q 023713 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVL 33 (278)
Q Consensus 1 ~~~~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl 33 (278)
|.-..|-.||..-+...=..--.+-|..||.=+
T Consensus 1 ~~iY~C~rCg~~fs~~el~~lP~IrCpyCGyri 33 (48)
T 4ayb_P 1 MAVYRCGKCWKTFTDEQLKVLPGVRCPYCGYKI 33 (48)
T ss_dssp ----CCCCTTTTCCCCCSCCCSSSCCTTTCCSC
T ss_pred CcEEEeeccCCCccHHHHhhCCCcccCccCcEE
Confidence 344678888863111111123456788888643
No 193
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=46.94 E-value=6.5 Score=29.40 Aligned_cols=32 Identities=22% Similarity=0.607 Sum_probs=22.6
Q ss_pred CCCCCCCCCCC-ceeEeCCCCceEcCCCccccc
Q 023713 3 DSYCADCKRLT-EVVFDHSAGDTICSECGLVLE 34 (278)
Q Consensus 3 ~~~Cp~Cg~~~-~vv~D~~~G~~vC~~CG~Vl~ 34 (278)
...|.+||... .+---..+|.++|..||+...
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~K 37 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHK 37 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHH
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhh
Confidence 36899999642 222334678999999999774
No 194
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=46.89 E-value=27 Score=24.20 Aligned_cols=29 Identities=17% Similarity=0.318 Sum_probs=25.8
Q ss_pred CCCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Q 023713 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193 (278)
Q Consensus 164 ~~p~tl~eia~~~~~v~~~~i~~~~~~l~~ 193 (278)
+-|.+..||++. ++++..++.+.++.|.+
T Consensus 34 ~~~~t~~ela~~-l~is~~tv~~~l~~L~~ 62 (109)
T 2d1h_A 34 EKPITSEELADI-FKLSKTTVENSLKKLIE 62 (109)
T ss_dssp CSCEEHHHHHHH-HTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 567999999995 99999999999999865
No 195
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=46.82 E-value=27 Score=23.87 Aligned_cols=33 Identities=9% Similarity=-0.027 Sum_probs=27.4
Q ss_pred CCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhh
Q 023713 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEA 197 (278)
Q Consensus 164 ~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~ 197 (278)
.-..++.|+|.. +++++.+|++-+.+|.+.=-+
T Consensus 14 ~g~vsv~eLa~~-l~VS~~TIRrdL~~Le~~G~l 46 (78)
T 1xn7_A 14 RGRMEAAQISQT-LNTPQPMINAMLQQLESMGKA 46 (78)
T ss_dssp SCSBCHHHHHHH-TTCCHHHHHHHHHHHHHHTSE
T ss_pred cCCCcHHHHHHH-HCcCHHHHHHHHHHHHHCCCE
Confidence 446899999995 999999999999998765433
No 196
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=46.70 E-value=29 Score=27.75 Aligned_cols=38 Identities=13% Similarity=0.022 Sum_probs=30.4
Q ss_pred HHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 156 LYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 156 lY~acR~~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
|.-..+.++.|.|++|||+ .++++..++.+..+.|.+.
T Consensus 14 I~~~~~~~g~~~s~~eia~-~lgl~~~tv~~~l~~Le~~ 51 (196)
T 3k2z_A 14 IEEFIEKNGYPPSVREIAR-RFRITPRGALLHLIALEKK 51 (196)
T ss_dssp HHHHHHHHSSCCCHHHHHH-HHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCHHHHHH-HcCCCcHHHHHHHHHHHHC
Confidence 3334567899999999999 4999999888888887653
No 197
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=46.35 E-value=36 Score=27.05 Aligned_cols=31 Identities=6% Similarity=-0.034 Sum_probs=27.3
Q ss_pred CCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Q 023713 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKHL 195 (278)
Q Consensus 164 ~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L 195 (278)
..|.|..+||+ .+|++..++.|..++|.+.=
T Consensus 176 ~~~~t~~~lA~-~lg~sr~tvsR~l~~l~~~g 206 (227)
T 3dkw_A 176 EIPVAKQLVAG-HLSIQPETFSRIMHRLGDEG 206 (227)
T ss_dssp CCCSCTHHHHH-HTTSCHHHHHHHHHHHHHHT
T ss_pred EecCCHHHHHH-HhCCCHHHHHHHHHHHHHCC
Confidence 46789999999 59999999999999998753
No 198
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=45.76 E-value=19 Score=23.73 Aligned_cols=22 Identities=9% Similarity=0.223 Sum_probs=18.5
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHH
Q 023713 167 RTVKEFCSVANGTTKKEIGRAKE 189 (278)
Q Consensus 167 ~tl~eia~~~~~v~~~~i~~~~~ 189 (278)
.|++|||.. +|++..++.+++.
T Consensus 1 ~T~~diA~~-aGVS~sTVSrvLn 22 (65)
T 1uxc_A 1 MKLDEIARL-AGVSRTTASYVIN 22 (65)
T ss_dssp CCHHHHHHH-HTSCHHHHHHHHH
T ss_pred CCHHHHHHH-HCcCHHHHHHHHc
Confidence 478999995 9999999988754
No 199
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=45.30 E-value=33 Score=26.85 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
.|.|..|||+ .+|++..++.|..++|.+.
T Consensus 145 ~~~t~~~lA~-~lg~sr~tvsR~l~~L~~~ 173 (202)
T 2zcw_A 145 LKATHDELAA-AVGSVRETVTKVIGELARE 173 (202)
T ss_dssp EECCHHHHHH-HHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHH-HhCCCHHHHHHHHHHHHHC
Confidence 5789999999 5999999999999999764
No 200
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=45.29 E-value=80 Score=22.44 Aligned_cols=52 Identities=19% Similarity=0.196 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQA 227 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v 227 (278)
.+.|+.|||.. +|++..++......-.+.|... . ....+..|...-+.+++-
T Consensus 38 e~~s~~EIA~~-lgiS~~tVr~~~~rAlkkLR~~------~----~~~~l~~~~~~~~~~~~~ 89 (99)
T 3t72_q 38 TDYTLEEVGKQ-FDVTRERIRQIEAKALRKLRHP------S----RSEVLRSGSSGSGTPEEK 89 (99)
T ss_pred CCCCHHHHHHH-HCcCHHHHHHHHHHHHHHHHHH------H----HHHHHHHHHHhcCCCHHH
Confidence 57899999995 9999988887666555555432 1 134556666666666553
No 201
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=45.04 E-value=9.8 Score=24.10 Aligned_cols=26 Identities=27% Similarity=0.625 Sum_probs=17.2
Q ss_pred CCCCCCCCCCC----ceeEeCCCCceEcCCCc
Q 023713 3 DSYCADCKRLT----EVVFDHSAGDTICSECG 30 (278)
Q Consensus 3 ~~~Cp~Cg~~~----~vv~D~~~G~~vC~~CG 30 (278)
+..|.-||... .++. ..|..||.+|=
T Consensus 11 ~~~CSFCGk~~~ev~~LIa--Gpgv~IC~eCi 40 (51)
T 2ds5_A 11 LLYCSFCGKSQHEVRKLIA--GPSVYICDECV 40 (51)
T ss_dssp CCBCTTTCCBTTTSSCEEE--CSSCEEEHHHH
T ss_pred CcEecCCCCCHHHhcccCC--CCCCEehHHHH
Confidence 46799999632 2333 34778999884
No 202
>2j6a_A Protein TRM112; translation termination, methyltransferase, transferase, ERF1, nuclear protein, protein methylation; 1.7A {Saccharomyces cerevisiae}
Probab=45.01 E-value=4 Score=31.72 Aligned_cols=19 Identities=21% Similarity=0.546 Sum_probs=15.6
Q ss_pred eEeCCCCceEcCCCccccc
Q 023713 16 VFDHSAGDTICSECGLVLE 34 (278)
Q Consensus 16 v~D~~~G~~vC~~CG~Vl~ 34 (278)
.+|..+|.++|.+||....
T Consensus 102 e~~v~eg~L~C~~cg~~YP 120 (141)
T 2j6a_A 102 QTSIAEGEMKCRNCGHIYY 120 (141)
T ss_dssp TEEEEEEEEECTTTCCEEE
T ss_pred heeccCCEEECCCCCCccc
Confidence 3566789999999999863
No 203
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=44.85 E-value=15 Score=24.79 Aligned_cols=28 Identities=21% Similarity=0.540 Sum_probs=20.3
Q ss_pred CCCCCCCCCCCceeEeCCCCceEcCCCccccccc
Q 023713 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAY 36 (278)
Q Consensus 3 ~~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~e~ 36 (278)
...|-.||. ++ ...| +.|.+||.+.=..
T Consensus 35 pt~C~~C~~---~l--~~qG-~kC~~C~~~cHkk 62 (72)
T 2fnf_X 35 PGWCDLCGR---EV--LRQA-LRCANCKFTCHSE 62 (72)
T ss_dssp CCBCTTTSS---BC--SSCC-EECTTSSCEECTG
T ss_pred CcchhhhhH---HH--HhCc-CccCCCCCeechh
Confidence 467999997 23 4566 6799999987443
No 204
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=44.01 E-value=15 Score=24.70 Aligned_cols=28 Identities=25% Similarity=0.546 Sum_probs=20.8
Q ss_pred CCCCCCCCCCCceeEeCCCCceEcCCCccccc
Q 023713 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (278)
Q Consensus 3 ~~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~ 34 (278)
...|..|+.. |..-.-.--|..||.|+=
T Consensus 11 ~~~C~~C~~~----F~~~~RrHHCR~CG~v~C 38 (73)
T 1vfy_A 11 SDACMICSKK----FSLLNRKHHCRSCGGVFC 38 (73)
T ss_dssp CSBCTTTCCB----CBTTBCCEECTTTCCEEC
T ss_pred CCcccCCCCc----cCCccccccCCCCCEEEc
Confidence 4579999973 445566788888888874
No 205
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=43.77 E-value=79 Score=21.92 Aligned_cols=72 Identities=15% Similarity=0.026 Sum_probs=40.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCC-CHHHHHHHHHH
Q 023713 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT-TKKEIGRAKEF 190 (278)
Q Consensus 112 ~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~gr~~~~~aAAclY~acR~~~~p~tl~eia~~~~~v-~~~~i~~~~~~ 190 (278)
.+.++|+.++++.....+ +|++........=....-+--|.-++. ....++.|||.. .|- +...+.+.|++
T Consensus 21 ~~~~lA~~~~~S~~~l~r---~fk~~~g~s~~~~~~~~Rl~~A~~lL~----~~~~si~~iA~~-~Gf~~~s~F~r~Fk~ 92 (103)
T 3lsg_A 21 TLSVLSEKLDLSSGYLSI---MFKKNFGIPFQDYLLQKRMEKAKLLLL----TTELKNYEIAEQ-VGFEDVNYFITKFKK 92 (103)
T ss_dssp CHHHHHHHTTCCHHHHHH---HHHHHHSSCHHHHHHHHHHHHHHHHHH----HCCCCHHHHHHH-TTCSCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHH---HHHHHHCcCHHHHHHHHHHHHHHHHHH----CCCCCHHHHHHH-hCCCCHHHHHHHHHH
Confidence 377889999999755444 666665332110001111222222222 235789999884 776 67777777765
Q ss_pred H
Q 023713 191 I 191 (278)
Q Consensus 191 l 191 (278)
.
T Consensus 93 ~ 93 (103)
T 3lsg_A 93 Y 93 (103)
T ss_dssp H
T ss_pred H
Confidence 3
No 206
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=43.62 E-value=28 Score=25.27 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHHcCCCHHHHHHHHHHH
Q 023713 164 NKPRTVKEFCSVANGTTKKEIGRAKEFI 191 (278)
Q Consensus 164 ~~p~tl~eia~~~~~v~~~~i~~~~~~l 191 (278)
+-+.|.+|||.. +|++..+|.|.-+.|
T Consensus 56 ~ge~TQREIA~~-lGiS~stISRi~r~L 82 (101)
T 1jhg_A 56 RGEMSQRELKNE-LGAGIATITRGSNSL 82 (101)
T ss_dssp HCCSCHHHHHHH-HCCCHHHHHHHHHHH
T ss_pred cCCcCHHHHHHH-HCCChhhhhHHHHHH
Confidence 346999999995 999999999994444
No 207
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=43.07 E-value=46 Score=20.58 Aligned_cols=47 Identities=9% Similarity=0.111 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQA 227 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v 227 (278)
...|..++|.. +|++..+|.+..+ |. .. .+.+.+.+++..|+++.+.
T Consensus 13 ~g~s~~~lA~~-~gis~~~i~~~e~------g~-------~~--~~~~~l~~i~~~l~~~~~~ 59 (66)
T 2xi8_A 13 KKISQSELAAL-LEVSRQTINGIEK------NK-------YN--PSLQLALKIAYYLNTPLED 59 (66)
T ss_dssp TTCCHHHHHHH-HTSCHHHHHHHHT------TS-------CC--CCHHHHHHHHHHTTSCHHH
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHc------CC-------CC--CCHHHHHHHHHHHCcCHHH
Confidence 45789999995 8999988877543 21 11 1457789999999988653
No 208
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=42.87 E-value=16 Score=23.59 Aligned_cols=26 Identities=23% Similarity=0.602 Sum_probs=19.1
Q ss_pred CCCCCCCCCCCceeEeCCCCceEcCCCccccc
Q 023713 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (278)
Q Consensus 3 ~~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~ 34 (278)
...|-.||+ ++ ..+| +.|.+||.+.=
T Consensus 22 pt~C~~C~~---~i--~kqg-~kC~~C~~~cH 47 (59)
T 1rfh_A 22 PGWCDLCGR---EV--LRQA-LRCANCKFTCH 47 (59)
T ss_dssp CEECTTTCS---EE--CSCC-EECTTTSCEEC
T ss_pred CeEchhcch---hh--hhCc-cEeCCCCCeEe
Confidence 357999997 23 4566 67999999874
No 209
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=42.66 E-value=14 Score=29.23 Aligned_cols=23 Identities=30% Similarity=0.725 Sum_probs=18.2
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLV 32 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~V 32 (278)
..||.|++ .++++. |.++|+ |.+
T Consensus 79 ~~CP~C~G--~l~y~~--~~Y~C~--G~i 101 (160)
T 2riq_A 79 LPCEECSG--QLVFKS--DAYYCT--GDV 101 (160)
T ss_dssp CCCTTTCC--CEEEET--TEEEEC--CEE
T ss_pred CCCCCCCC--EEEEeC--CeEEEC--CCC
Confidence 57999995 588874 999998 555
No 210
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=42.60 E-value=7.9 Score=30.26 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=22.5
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCccccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~ 34 (278)
..|-+||+...--....-|..+|.+|.-|-.
T Consensus 39 ~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR 69 (147)
T 3dwd_A 39 NVCFECGAFNPQWVSVTYGIWICLECSGRHR 69 (147)
T ss_dssp TBCTTTCCBSCCEEETTTTEEECHHHHHHHH
T ss_pred CccCCCCCCCCCeEEecccEeEhHhhChHHh
Confidence 5799999843333455779999999988764
No 211
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=42.58 E-value=44 Score=27.75 Aligned_cols=74 Identities=11% Similarity=0.247 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhh-----c---ccccc-cCCCCHHHHHHHHHh
Q 023713 149 EAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE-----M---GQSVE-MGTIHASDYLRRFCS 219 (278)
Q Consensus 149 ~~~aAAclY~acR~~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~-----~---~~~~~-~~~~~p~~~i~r~~~ 219 (278)
..++=|.||++ +.|+++.+++.+ ++++..++......|...+.-. . +.... ....+-..||.++..
T Consensus 17 ~~~iEAlLf~a----~epvs~~~La~~-l~~~~~~v~~~l~~L~~~y~~~~rGiel~~v~~gy~l~T~~e~~~~v~~~~~ 91 (219)
T 2z99_A 17 KRVLEALLLVI----DTPVTADALAAA-TEQPVYRVAAKLQLMADELTGRDSGIDLRHTSEGWRMYTRARFAPYVEKLLL 91 (219)
T ss_dssp HHHHHHHHHHC----SSCBCHHHHHHH-HTSCHHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEEECGGGHHHHHHHHH
T ss_pred HHHHHHHHHHc----CCCCCHHHHHHH-HCcCHHHHHHHHHHHHHHHhhCCCCEEEEEECCEEEEEEcHHHHHHHHHHhc
Confidence 45677888865 789999999995 8999999999999999877421 1 01111 122355789999875
Q ss_pred h---cCCCHHH
Q 023713 220 N---LGMTNQA 227 (278)
Q Consensus 220 ~---L~l~~~v 227 (278)
. -.|+...
T Consensus 92 ~~~~~~Ls~aa 102 (219)
T 2z99_A 92 DGARTKLTRAA 102 (219)
T ss_dssp HHHSCCCCHHH
T ss_pred ccccCccCHHH
Confidence 2 4566543
No 212
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=42.50 E-value=41 Score=23.85 Aligned_cols=31 Identities=6% Similarity=0.131 Sum_probs=27.1
Q ss_pred cCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 163 ENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 163 ~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
.|.+.+..|||+. +|++..+++++++.|.+.
T Consensus 30 ~g~~~s~~eLa~~-lgvs~~tV~~~L~~L~~~ 60 (110)
T 1q1h_A 30 KGTEMTDEEIANQ-LNIKVNDVRKKLNLLEEQ 60 (110)
T ss_dssp HCSCBCHHHHHHT-TTSCHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 5667899999995 999999999999999763
No 213
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=42.40 E-value=4.6 Score=35.15 Aligned_cols=40 Identities=23% Similarity=0.605 Sum_probs=27.2
Q ss_pred CCCCCCCCCCceeEeC--CCCceEcCCCcc--------cccccccccccchhhcc
Q 023713 4 SYCADCKRLTEVVFDH--SAGDTICSECGL--------VLEAYSVDETSEWRIFA 48 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~--~~G~~vC~~CG~--------Vl~e~~id~~~ewr~f~ 48 (278)
.+||.|+. .+++. .....||+.|+. ++ +.++|.|+ |..+.
T Consensus 31 ~kc~~~~~---~~y~~~l~~~~~v~p~~~~~~r~~arerI-~~L~D~gs-F~El~ 80 (285)
T 2f9i_B 31 TKCPKCKK---IMYTKELAENLNVCFNCDHHIALTAYKRI-EAISDEGS-FTEFD 80 (285)
T ss_dssp EECTTTCC---EEEHHHHHHTTTBCTTTCCBCCCCHHHHH-HHTSCTTC-CEEES
T ss_pred HhhHhhCC---ccchhhhHHhcCcCCCCCCCCCCCHHHHH-HHHccCCC-cEEEC
Confidence 47999997 35553 566789999999 44 35667653 44554
No 214
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=42.09 E-value=48 Score=20.62 Aligned_cols=46 Identities=9% Similarity=0.068 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHHH
Q 023713 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQA 227 (278)
Q Consensus 166 p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v 227 (278)
..|..++|.. +|++..+|.+..+ |. .. .+.+.+.+++..|+++.+.
T Consensus 18 g~s~~~lA~~-~gis~~~i~~~e~------g~-------~~--~~~~~l~~i~~~l~~~~~~ 63 (68)
T 2r1j_L 18 KIRQAALGKM-VGVSNVAISQWER------SE-------TE--PNGENLLALSKALQCSPDY 63 (68)
T ss_dssp TCCHHHHHHH-HTSCHHHHHHHHT------TS-------SC--CBHHHHHHHHHHTTSCHHH
T ss_pred CCCHHHHHHH-HCCCHHHHHHHHc------CC-------CC--CCHHHHHHHHHHhCCCHHH
Confidence 4689999995 8999988876532 21 11 1457789999999998754
No 215
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=42.00 E-value=45 Score=27.50 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
.|.|..|||+ .+|++..++.|..++|.+.
T Consensus 216 l~lt~~~lA~-~lG~sr~tvsR~l~~L~~~ 244 (260)
T 3kcc_A 216 IKITRQEIGQ-IVGCSRETVGRILKMLEDQ 244 (260)
T ss_dssp EECCHHHHHH-HHTCCHHHHHHHHHHHHHT
T ss_pred ecCCHHHHHH-HhCCCHHHHHHHHHHHHHC
Confidence 4789999999 5999999999999999864
No 216
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=41.96 E-value=40 Score=24.71 Aligned_cols=71 Identities=11% Similarity=0.031 Sum_probs=40.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhCCC--CCCCcHH---HHHHHHHHHHHHhcCCCCCHHHHHHHHcC--CCHHHHH
Q 023713 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKP--LRGRNQE---AIVAACLYIACRQENKPRTVKEFCSVANG--TTKKEIG 185 (278)
Q Consensus 113 I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~--~~gr~~~---~~aAAclY~acR~~~~p~tl~eia~~~~~--v~~~~i~ 185 (278)
+.++|..|+++..++..- +++..+.+. ..|+... ......+-+ . .+-..+..+|+.. ++ ++..+|.
T Consensus 25 ~~~ia~~lgis~~Tv~r~---~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~-~--~~~~~s~~~i~~~-lg~~~s~~tV~ 97 (141)
T 1u78_A 25 LHEMSRKISRSRHCIRVY---LKDPVSYGTSKRAPRRKALSVRDERNVIRA-A--SNSCKTARDIRNE-LQLSASKRTIL 97 (141)
T ss_dssp HHHHHHHHTCCHHHHHHH---HHSGGGTTCCCCCCCCCSSCHHHHHHHHHH-H--HHCCCCHHHHHHH-TTCCSCHHHHH
T ss_pred HHHHHHHHCcCHHHHHHH---HHcccccCCcCCCCCCCcCCHHHHHHHHHH-H--hCCCCCHHHHHHH-HCCCccHHHHH
Confidence 678899999997766553 333333321 2343221 111222222 2 2233789999885 67 7888888
Q ss_pred HHHHH
Q 023713 186 RAKEF 190 (278)
Q Consensus 186 ~~~~~ 190 (278)
+.++.
T Consensus 98 r~l~~ 102 (141)
T 1u78_A 98 NVIKR 102 (141)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87665
No 217
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=41.87 E-value=73 Score=21.39 Aligned_cols=50 Identities=2% Similarity=-0.033 Sum_probs=35.7
Q ss_pred CCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHHHHH
Q 023713 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVK 229 (278)
Q Consensus 164 ~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~ 229 (278)
....|..|+|.. +|++..+|.+..+ |.. ..+.+.+.+++..|++++....
T Consensus 25 ~~gltq~elA~~-~gis~~~is~~E~------G~~---------~p~~~~l~~ia~~l~v~~~~~~ 74 (86)
T 3eus_A 25 DAGLTQADLAER-LDKPQSFVAKVET------RER---------RLDVIEFAKWMAACEGLDVVSE 74 (86)
T ss_dssp HTTCCHHHHHHH-TTCCHHHHHHHHT------TSS---------CCBHHHHHHHHHHTTCGGGHHH
T ss_pred HcCCCHHHHHHH-hCcCHHHHHHHHC------CCC---------CCCHHHHHHHHHHcCCCcHHHH
Confidence 355899999995 9999998876632 211 1245778899999999765543
No 218
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=41.80 E-value=13 Score=24.69 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=18.9
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAK 188 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~ 188 (278)
...|++|||.. +|++..++.+++
T Consensus 8 ~~~t~~diA~~-aGVS~sTVSr~l 30 (67)
T 2l8n_A 8 TAATMKDVALK-AKVSTATVSRAL 30 (67)
T ss_dssp -CCCHHHHHHH-TTCCHHHHHHTT
T ss_pred CCCCHHHHHHH-HCCCHHHHHHHH
Confidence 35799999995 999999998763
No 219
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=41.66 E-value=44 Score=22.31 Aligned_cols=32 Identities=3% Similarity=-0.041 Sum_probs=26.7
Q ss_pred hcC-CCCCHHHHHHHHc-----CCCHHHHHHHHHHHHHH
Q 023713 162 QEN-KPRTVKEFCSVAN-----GTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 162 ~~~-~p~tl~eia~~~~-----~v~~~~i~~~~~~l~~~ 194 (278)
..+ .|.|..||+.. + +++..++.+..+.|.+.
T Consensus 28 ~~~~~~~s~~el~~~-l~~~~~~is~~TVyR~L~~L~~~ 65 (83)
T 2fu4_A 28 EPDNHHVSAEDLYKR-LIDMGEEIGLATVYRVLNQFDDA 65 (83)
T ss_dssp SGGGSSBCHHHHHHH-HHHTTCCCCHHHHHHHHHHHHHH
T ss_pred hCCCCCCCHHHHHHH-HHHhCCCCCHhhHHHHHHHHHHC
Confidence 344 68999999995 7 89999999999988754
No 220
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=40.82 E-value=1.2e+02 Score=26.35 Aligned_cols=59 Identities=10% Similarity=0.006 Sum_probs=45.5
Q ss_pred cCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhcC-----CCCChhHHHHHHHHHHHHHHHHH
Q 023713 205 MGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLD-----IRLILVFFSLFLVETHIQLIVWA 265 (278)
Q Consensus 205 ~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~-----~Gr~P~~iaaA~v~~~~~~~~~~ 265 (278)
.|.+...+||.|+...-.++..+.-.|.-.++++.... ...+..=+-.++| .+|.++|.
T Consensus 72 ~P~ISI~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtAL--mlAsK~ld 135 (293)
T 2pmi_B 72 PPNISIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTAT--TVATKGLC 135 (293)
T ss_dssp CCSSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHH--HHHHHHHC
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHH--HHHHHhcc
Confidence 67778899999999999999999988887777776632 2445666777777 67777764
No 221
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=40.77 E-value=8.9 Score=29.69 Aligned_cols=31 Identities=23% Similarity=0.591 Sum_probs=21.5
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCccccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~ 34 (278)
..|-+||+...--....-|..+|.+|.-|-.
T Consensus 26 ~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR 56 (140)
T 2olm_A 26 RKCFDCDQRGPTYVNMTVGSFVCTSCSGSLR 56 (140)
T ss_dssp GSCTTTCSSCCCEEETTTTEEECHHHHHHHT
T ss_pred CcCCCCCCCCCCceeeccCEEEchhccchhc
Confidence 4688998742223345678899999888764
No 222
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=40.75 E-value=26 Score=27.98 Aligned_cols=29 Identities=14% Similarity=0.216 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
.|.|..|||+ .+|++..++.|..++|.+.
T Consensus 176 ~~~t~~~lA~-~lg~sr~tvsR~l~~l~~~ 204 (227)
T 3d0s_A 176 HDLTQEEIAQ-LVGASRETVNKALADFAHR 204 (227)
T ss_dssp CCCCHHHHHH-HHTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHH-HhCCcHHHHHHHHHHHHHC
Confidence 5689999999 4999999999999999864
No 223
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=40.65 E-value=40 Score=24.14 Aligned_cols=38 Identities=11% Similarity=0.099 Sum_probs=30.6
Q ss_pred HHHHHHHhcCCCCCHHHHHH-HHcCCCHHHHHHHHHHHHHH
Q 023713 155 CLYIACRQENKPRTVKEFCS-VANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 155 clY~acR~~~~p~tl~eia~-~~~~v~~~~i~~~~~~l~~~ 194 (278)
.+......++ +.|+.|+++ . .+++..++++.++.|.+.
T Consensus 20 siL~~L~~~~-~~t~~~Lae~~-l~~drstvsrnl~~L~r~ 58 (95)
T 1bja_A 20 TILITIAKKD-FITAAEVREVH-PDLGNAVVNSNIGVLIKK 58 (95)
T ss_dssp HHHHHHHHST-TBCHHHHHHTC-TTSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCC-CCCHHHHHHHH-hcccHHHHHHHHHHHHHC
Confidence 3444445566 999999999 6 899999999999998765
No 224
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=40.60 E-value=57 Score=20.36 Aligned_cols=46 Identities=20% Similarity=0.181 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQA 227 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v 227 (278)
...|..++|.. +|++..+|.+..+ |. ..+ +.. +.+++..|+++.+.
T Consensus 13 ~glsq~~lA~~-~gis~~~i~~~e~------g~-------~~~--~~~-l~~la~~l~~~~~~ 58 (69)
T 1r69_A 13 LGLNQAELAQK-VGTTQQSIEQLEN------GK-------TKR--PRF-LPELASALGVSVDW 58 (69)
T ss_dssp TTCCHHHHHHH-HTSCHHHHHHHHT------TS-------CSS--CTT-HHHHHHHTTCCHHH
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHc------CC-------CCC--chH-HHHHHHHHCcCHHH
Confidence 35789999995 8999988876532 21 111 223 89999999998654
No 225
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=40.49 E-value=62 Score=24.00 Aligned_cols=51 Identities=12% Similarity=0.176 Sum_probs=34.6
Q ss_pred cCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhcccccccCCCC---HHHHHHHHHhhcCCCHH
Q 023713 163 ENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIH---ASDYLRRFCSNLGMTNQ 226 (278)
Q Consensus 163 ~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~---p~~~i~r~~~~L~l~~~ 226 (278)
+....|+.|+|+. +|++...|.+..+- .. .|..+ ...++.++++.||++.+
T Consensus 13 ~~~gltq~elA~~-~gis~~~is~iE~g------~~------~~~~~~~~~~~~l~~ia~~L~v~~~ 66 (130)
T 3fym_A 13 ERLGMTLTELEQR-TGIKREMLVHIENN------EF------DQLPNKNYSEGFIRKYASVVNIEPN 66 (130)
T ss_dssp HHTTCCHHHHHHH-HCCCHHHHHHHHTT------CG------GGSSSGGGHHHHHHHHHHHTTCCHH
T ss_pred HHcCCCHHHHHHH-HCcCHHHHHHHHCC------CC------CCCchhhhHHHHHHHHHHHhCCCHH
Confidence 4456899999994 89999988776331 11 11111 12678899999988865
No 226
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=40.25 E-value=8.3 Score=29.61 Aligned_cols=31 Identities=26% Similarity=0.545 Sum_probs=21.7
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCccccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~ 34 (278)
..|-+||+...--....-|..+|.+|.-|-.
T Consensus 28 ~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR 58 (134)
T 2iqj_A 28 KFCADCQSKGPRWASWNIGVFICIRCAGIHR 58 (134)
T ss_dssp GBCTTTCCBSCCEEETTTTEEECHHHHHHHH
T ss_pred CcCCcCcCCCCCeEEecCCEEEhHhhhHHHh
Confidence 4688999743223345679999999988764
No 227
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=40.16 E-value=39 Score=23.51 Aligned_cols=29 Identities=14% Similarity=0.108 Sum_probs=25.3
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Q 023713 167 RTVKEFCSVANGTTKKEIGRAKEFIVKHLE 196 (278)
Q Consensus 167 ~tl~eia~~~~~v~~~~i~~~~~~l~~~L~ 196 (278)
.|..|||.. +|+++.++++.+..|.+.--
T Consensus 31 ~sa~eLAk~-LgiSk~aVr~~L~~Le~eG~ 59 (82)
T 1oyi_A 31 ATAAQLTRQ-LNMEKREVNKALYDLQRSAM 59 (82)
T ss_dssp EEHHHHHHH-SSSCHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHH-HCcCHHHHHHHHHHHHHCCC
Confidence 999999995 99999999999999876443
No 228
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=40.14 E-value=8.4 Score=29.77 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=21.3
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCccccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~ 34 (278)
..|-+||+...--....-|..+|.+|.-|-.
T Consensus 37 ~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR 67 (138)
T 2owa_A 37 RTCFDCESRNPTWLSLSFAVFICLNCSSDHR 67 (138)
T ss_dssp GBCTTTCCBSCCEEETTTTEEECHHHHHHHH
T ss_pred CcCCCCcCCCCCeEEecCCEEEhHhhhHHHh
Confidence 4688898742223345678889998888764
No 229
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=40.07 E-value=1e+02 Score=22.23 Aligned_cols=53 Identities=15% Similarity=0.260 Sum_probs=37.3
Q ss_pred hcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhcccccccCCCC---HHHHHHHHHhhcCCCHHH
Q 023713 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIH---ASDYLRRFCSNLGMTNQA 227 (278)
Q Consensus 162 ~~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~---p~~~i~r~~~~L~l~~~v 227 (278)
+.....|+.|+|.. +|++...|.+..+ |.. .+... ...++.+++..|+++.+.
T Consensus 16 R~~~glSq~eLA~~-~gis~~~is~iE~------G~~------~~~p~~~~~~~~l~~iA~~Lgv~~~~ 71 (112)
T 2wus_R 16 REERRITLLDASLF-TNINPSKLKRIEE------GDL------KGLDAEVYIKSYIKRYSEFLELSPDE 71 (112)
T ss_dssp HHTTTCCHHHHHHH-SSCCHHHHHHHHH------TCC------TTSSCHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHcCCCHHHHHHH-HCcCHHHHHHHHC------CCC------CCCcchhHHHHHHHHHHHHhCcCHHH
Confidence 34567899999994 9999999877633 211 11112 357899999999998653
No 230
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=40.04 E-value=24 Score=28.20 Aligned_cols=29 Identities=21% Similarity=0.286 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
.|.|..+||+ .+|++..++.|..++|.+.
T Consensus 162 ~~~t~~~lA~-~lG~sr~tvsR~l~~L~~~ 190 (222)
T 1ft9_A 162 VDFTVEEIAN-LIGSSRQTTSTALNSLIKE 190 (222)
T ss_dssp ECCCHHHHHH-HHCSCHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHH-HhCCcHHHHHHHHHHHHHC
Confidence 5689999999 5999999999999999764
No 231
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=40.02 E-value=48 Score=24.43 Aligned_cols=31 Identities=13% Similarity=0.252 Sum_probs=27.1
Q ss_pred hcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 162 ~~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
.++ |.++.|++.. ++++..++.+.++.|.+.
T Consensus 51 ~~~-~~t~~ela~~-l~~~~~tvs~~l~~Le~~ 81 (148)
T 3nrv_A 51 SAS-DCSVQKISDI-LGLDKAAVSRTVKKLEEK 81 (148)
T ss_dssp HSS-SBCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred cCC-CCCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 344 8999999995 999999999999999875
No 232
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=39.68 E-value=7.1 Score=30.41 Aligned_cols=31 Identities=23% Similarity=0.402 Sum_probs=21.2
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCccccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~ 34 (278)
..|-+||+...--....-|..+|.+|.-|-.
T Consensus 38 ~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR 68 (144)
T 2p57_A 38 KACFDCGAKNPSWASITYGVFLCIDCSGVHR 68 (144)
T ss_dssp GBCTTTCCBSCCEEEGGGTEEECHHHHHHHH
T ss_pred CcCCCCcCCCCCeEEeccCEEEhhhchHHHc
Confidence 4688998742223344678899999887753
No 233
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=39.53 E-value=6.3 Score=26.68 Aligned_cols=20 Identities=25% Similarity=0.901 Sum_probs=13.4
Q ss_pred CCCCCCCCCCCceeEeCCCCceEcCCCc
Q 023713 3 DSYCADCKRLTEVVFDHSAGDTICSECG 30 (278)
Q Consensus 3 ~~~Cp~Cg~~~~vv~D~~~G~~vC~~CG 30 (278)
...|.+|.. |+ .+..|.+||
T Consensus 11 ~~AC~~C~~---~~-----~~~~CPnC~ 30 (69)
T 1ryq_A 11 EKACRHCHY---IT-----SEDRCPVCG 30 (69)
T ss_dssp CEEETTTCB---EE-----SSSSCTTTC
T ss_pred hhhHHhCCc---cc-----cCCcCCCcc
Confidence 356888876 34 255788888
No 234
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=39.36 E-value=76 Score=22.49 Aligned_cols=71 Identities=8% Similarity=0.096 Sum_probs=38.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCC-CHHHHHHHHHHH
Q 023713 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT-TKKEIGRAKEFI 191 (278)
Q Consensus 113 I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~gr~~~~~aAAclY~acR~~~~p~tl~eia~~~~~v-~~~~i~~~~~~l 191 (278)
|.++|+.++++.....+ +|++........=....-+--|+-++. ....++.|||.. .|- +...+.+.|++.
T Consensus 26 ~~~lA~~~~~S~~~l~r---~fk~~~G~s~~~~~~~~Rl~~A~~lL~----~~~~~i~eIA~~-~Gf~~~s~F~r~Fk~~ 97 (113)
T 3oio_A 26 TDDIAYYVGVSRRQLER---LFKQYLGTVPSKYYLELRLNRARQLLQ----QTSKSIVQIGLA-CGFSSGPHFSSTYRNH 97 (113)
T ss_dssp HHHHHHHHTSCHHHHHH---HHHHHTSSCHHHHHHHHHHHHHHHHHH----HCCCCHHHHHHH-TTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHH---HHHHHHCcCHHHHHHHHHHHHHHHHHH----cCCCCHHHHHHH-HCCCCHHHHHHHHHHH
Confidence 67888889998655444 666654322110000111222333322 235789999884 665 566777766653
No 235
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=39.32 E-value=44 Score=24.35 Aligned_cols=30 Identities=7% Similarity=0.026 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 164 ~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
+-|.|+.||++. ++++..++.+.++.|.+.
T Consensus 45 ~~~~t~~ela~~-l~~~~~tvs~~l~~Le~~ 74 (139)
T 3eco_A 45 QDGLTQNDIAKA-LQRTGPTVSNLLRNLERK 74 (139)
T ss_dssp TTCEEHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHH-hCCCcccHHHHHHHHHHC
Confidence 368999999995 999999999999999764
No 236
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=39.11 E-value=56 Score=20.40 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=22.9
Q ss_pred CCCCCHHHHHHHHc-----CCCHHHHHHHHHHH
Q 023713 164 NKPRTVKEFCSVAN-----GTTKKEIGRAKEFI 191 (278)
Q Consensus 164 ~~p~tl~eia~~~~-----~v~~~~i~~~~~~l 191 (278)
+-+.|..|+++. + +++..+|.+.++++
T Consensus 17 ~~~~t~~el~~~-l~~~~~~vs~~Tv~R~L~~l 48 (64)
T 2p5k_A 17 NEIETQDELVDM-LKQDGYKVTQATVSRDIKEL 48 (64)
T ss_dssp SCCCSHHHHHHH-HHHTTCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHH-HHHhCCCcCHHHHHHHHHHc
Confidence 458999999995 8 99999999988843
No 237
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=39.07 E-value=46 Score=23.19 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=17.3
Q ss_pred CCHHHHHHHHcCCCHHHHHHH
Q 023713 167 RTVKEFCSVANGTTKKEIGRA 187 (278)
Q Consensus 167 ~tl~eia~~~~~v~~~~i~~~ 187 (278)
.+.+.||+ ..|+++.+|.|.
T Consensus 25 ~gQ~~vAe-~~GvdeStISR~ 44 (83)
T 1zs4_A 25 LGTEKTAE-AVGVDKSQISRW 44 (83)
T ss_dssp HCHHHHHH-HHTSCHHHHHHH
T ss_pred HhhHHHHH-HhCCCHHHHhhh
Confidence 46789999 599999999996
No 238
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=38.90 E-value=1.1e+02 Score=22.02 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 166 p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
|.++.||++. ++++..++.+.++.|.+.
T Consensus 52 ~~t~~ela~~-l~~~~~tvs~~l~~L~~~ 79 (140)
T 2nnn_A 52 PCPQNQLGRL-TAMDAATIKGVVERLDKR 79 (140)
T ss_dssp SBCHHHHHHH-TTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 8999999995 999999999999999875
No 239
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=38.79 E-value=52 Score=26.06 Aligned_cols=32 Identities=6% Similarity=0.179 Sum_probs=27.8
Q ss_pred HhcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Q 023713 161 RQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193 (278)
Q Consensus 161 R~~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~ 193 (278)
+..+.|.|..|+|+. ++++..+|.+-++.|.+
T Consensus 31 ~~~~~~~s~~eLa~~-l~vS~~Ti~rdi~~L~~ 62 (187)
T 1j5y_A 31 ERSKEPVSGAQLAEE-LSVSRQVIVQDIAYLRS 62 (187)
T ss_dssp HHCSSCBCHHHHHHH-HTSCHHHHHHHHHHHHH
T ss_pred HHcCCCcCHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 345567999999995 99999999999999976
No 240
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=38.37 E-value=24 Score=28.18 Aligned_cols=29 Identities=14% Similarity=0.182 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
.|.|..|||+ .+|++..++.|..++|.+.
T Consensus 186 ~~lt~~~lA~-~lg~sr~tvsR~l~~L~~~ 214 (230)
T 3iwz_A 186 LRVSRQELAR-LVGCSREMAGRVLKKLQAD 214 (230)
T ss_dssp EECCHHHHHH-HHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHH-HhCCcHHHHHHHHHHHHHC
Confidence 5689999999 4999999999999999864
No 241
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=38.16 E-value=15 Score=25.51 Aligned_cols=10 Identities=20% Similarity=0.886 Sum_probs=6.1
Q ss_pred CCCCCCCCCC
Q 023713 2 ADSYCADCKR 11 (278)
Q Consensus 2 ~~~~Cp~Cg~ 11 (278)
....||.||.
T Consensus 29 ~k~FCp~CGn 38 (79)
T 2con_A 29 NRVFCGHCGN 38 (79)
T ss_dssp SCCSCSSSCC
T ss_pred ccccccccCc
Confidence 3456666665
No 242
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=38.00 E-value=27 Score=27.57 Aligned_cols=54 Identities=15% Similarity=0.188 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhc
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNL 221 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L 221 (278)
.|.|..|||+ .+|++..++.|..++|.+.==++... -.+...|+ +-+.+++..|
T Consensus 162 ~~~t~~~lA~-~lg~sr~tvsR~l~~l~~~g~I~~~~-~~i~i~d~-~~L~~~a~~l 215 (216)
T 4ev0_A 162 FQIRHHELAA-LAGTSRETVSRVLHALAEEGVVRLGP-GTVEVREA-ALLEEIAFGL 215 (216)
T ss_dssp EECCHHHHHH-HHTSCHHHHHHHHHHHHHTTSEEEET-TEEEESCH-HHHHHHHTTC
T ss_pred CCCCHHHHHH-HhCCCHHHHHHHHHHHHHCCCEEecC-CEEEEeCH-HHHHHHhhcc
Confidence 5689999999 59999999999999998743232110 01334465 3455555543
No 243
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=37.86 E-value=1e+02 Score=21.51 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHHH
Q 023713 151 IVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191 (278)
Q Consensus 151 ~aAAclY~acR~~~~p~tl~eia~~~~~v~~~~i~~~~~~l 191 (278)
+..+.-|+.-.. ..+.++.++|.. ++++...+.+.+++.
T Consensus 4 i~~~~~~i~~~~-~~~~~~~~lA~~-~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 4 VRQVEEYIEANW-MRPITIEKLTAL-TGISSRGIFKAFQRS 42 (108)
T ss_dssp HHHHHHHHHHHT-TSCCCHHHHHHH-HTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc-cCCCCHHHHHHH-HCCCHHHHHHHHHHH
Confidence 334444554443 457999999995 899999999988764
No 244
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=37.76 E-value=47 Score=24.34 Aligned_cols=29 Identities=14% Similarity=0.211 Sum_probs=26.0
Q ss_pred CCCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Q 023713 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193 (278)
Q Consensus 164 ~~p~tl~eia~~~~~v~~~~i~~~~~~l~~ 193 (278)
+-|.|+.||++. ++++..++.+..+.|.+
T Consensus 39 ~~~~t~~ela~~-l~~~~stvs~~l~~L~~ 67 (152)
T 1ku9_A 39 DKPLTISDIMEE-LKISKGNVSMSLKKLEE 67 (152)
T ss_dssp SSCEEHHHHHHH-HTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 358999999995 99999999999999976
No 245
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=37.56 E-value=95 Score=24.89 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=25.8
Q ss_pred C-CCCHHHHHHHHcCCCH-HHHHHHHHHHHHH
Q 023713 165 K-PRTVKEFCSVANGTTK-KEIGRAKEFIVKH 194 (278)
Q Consensus 165 ~-p~tl~eia~~~~~v~~-~~i~~~~~~l~~~ 194 (278)
. |.|..|||+ .+|++. .++.|..++|.+.
T Consensus 167 ~~~~t~~~lA~-~lG~sr~etvsR~l~~l~~~ 197 (238)
T 2bgc_A 167 LDNLTMQELGY-SSGIAHSSAVSRIISKLKQE 197 (238)
T ss_dssp CSCCCHHHHHH-HTTCCCHHHHHHHHHHHHHT
T ss_pred eccCCHHHHHH-HhCCChHHHHHHHHHHHHHC
Confidence 5 799999999 599999 7999999999764
No 246
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=37.54 E-value=59 Score=23.85 Aligned_cols=31 Identities=0% Similarity=-0.022 Sum_probs=27.6
Q ss_pred cCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 163 ENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 163 ~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
.+-+.++.|||.. ++++..++.+.++.|.+.
T Consensus 28 ~~~~~s~~ela~~-l~is~~tv~~~l~~Le~~ 58 (139)
T 2x4h_A 28 SGEGAKINRIAKD-LKIAPSSVFEEVSHLEEK 58 (139)
T ss_dssp TTSCBCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHH-hCCChHHHHHHHHHHHHC
Confidence 5678999999995 999999999999999764
No 247
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=37.39 E-value=35 Score=19.60 Aligned_cols=23 Identities=9% Similarity=-0.028 Sum_probs=19.6
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHHH
Q 023713 167 RTVKEFCSVANGTTKKEIGRAKEF 190 (278)
Q Consensus 167 ~tl~eia~~~~~v~~~~i~~~~~~ 190 (278)
.+..+||.. ++++..+|.+.++.
T Consensus 22 ~s~~~IA~~-lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 22 VSLHEMSRK-ISRSRHCIRVYLKD 44 (51)
T ss_dssp CCHHHHHHH-HTCCHHHHHHHHHC
T ss_pred CCHHHHHHH-HCcCHHHHHHHHhh
Confidence 589999995 99999999887654
No 248
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=37.20 E-value=21 Score=24.65 Aligned_cols=29 Identities=24% Similarity=0.643 Sum_probs=20.6
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCccccccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAY 36 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~e~ 36 (278)
..|..|+.. |..-.-.--|..||.|+=..
T Consensus 20 ~~C~~C~~~----Fs~~~RrHHCR~CG~v~C~~ 48 (82)
T 2yw8_A 20 THCRQCEKE----FSISRRKHHCRNCGHIFCNT 48 (82)
T ss_dssp CBCTTTCCB----CBTTBCCEECTTTCCEECSG
T ss_pred CcccCcCCc----ccCccccccCCCCCCEEChH
Confidence 469999973 45556677888888887533
No 249
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=37.17 E-value=14 Score=24.07 Aligned_cols=29 Identities=17% Similarity=0.536 Sum_probs=21.2
Q ss_pred CCCCCCCCCCCceeEeCCCCceEcCC--Ccccc
Q 023713 3 DSYCADCKRLTEVVFDHSAGDTICSE--CGLVL 33 (278)
Q Consensus 3 ~~~Cp~Cg~~~~vv~D~~~G~~vC~~--CG~Vl 33 (278)
...||.|+. .|..+..-..+.|.. ||.-.
T Consensus 6 ~k~CP~C~~--~Iek~~GCnhmtC~~~~C~~~F 36 (60)
T 1wd2_A 6 TKECPKCHV--TIEKDGGCNHMVCRNQNCKAEF 36 (60)
T ss_dssp CCCCTTTCC--CCSSCCSCCSSSCCSSGGGSCC
T ss_pred ceECcCCCC--eeEeCCCCCcEEECCCCcCCEE
Confidence 468999997 366666666788887 87654
No 250
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=37.10 E-value=36 Score=23.29 Aligned_cols=30 Identities=7% Similarity=0.107 Sum_probs=26.3
Q ss_pred cCCCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Q 023713 163 ENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193 (278)
Q Consensus 163 ~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~ 193 (278)
.+-|.+..||++. ++++..++.+.++.|.+
T Consensus 35 ~~~~~s~~ela~~-l~is~~tvs~~l~~L~~ 64 (99)
T 3cuo_A 35 GSPGTSAGELTRI-TGLSASATSQHLARMRD 64 (99)
T ss_dssp TCCSEEHHHHHHH-HCCCHHHHHHHHHHHHH
T ss_pred hCCCcCHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 3558999999995 89999999999999964
No 251
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=37.02 E-value=22 Score=28.90 Aligned_cols=29 Identities=24% Similarity=0.563 Sum_probs=20.3
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCccccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~ 34 (278)
..||.||. ..+.-.+.. ...|..||+...
T Consensus 114 ~~Cp~Cg~-g~fma~h~d-R~~CGkC~~t~~ 142 (189)
T 2xzm_9 114 KGCPKCGP-GIFMAKHYD-RHYCGKCHLTLK 142 (189)
T ss_dssp EECSTTCS-SCEEEECSS-CEEETTTCCCBC
T ss_pred ccCCccCC-CccccCccC-CCccCCceeEEE
Confidence 46999996 344444444 669999999863
No 252
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=36.78 E-value=52 Score=24.58 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 166 p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
+.++.||++. ++++..++.+.++.|.+.
T Consensus 58 ~~t~~ela~~-l~is~~tvs~~l~~Le~~ 85 (154)
T 2eth_A 58 PKKMKEIAEF-LSTTKSNVTNVVDSLEKR 85 (154)
T ss_dssp CBCHHHHHHH-TTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 7999999995 999999999999999874
No 253
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=36.78 E-value=59 Score=23.25 Aligned_cols=31 Identities=13% Similarity=0.260 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhh
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEA 197 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~ 197 (278)
-+.++.|+++. ++++..++.+.++.|.+ .|+
T Consensus 44 ~~~s~~ela~~-l~is~stvsr~l~~Le~-~Gl 74 (119)
T 2lkp_A 44 GPLPVTDLAEA-IGMEQSAVSHQLRVLRN-LGL 74 (119)
T ss_dssp CCCCHHHHHHH-HSSCHHHHHHHHHHHHH-HCS
T ss_pred CCCCHHHHHHH-HCcCHHHHHHHHHHHHH-CCC
Confidence 36899999995 99999999999999988 775
No 254
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=36.71 E-value=1e+02 Score=21.50 Aligned_cols=70 Identities=13% Similarity=0.143 Sum_probs=39.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCC-CHHHHHHHHHH
Q 023713 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT-TKKEIGRAKEF 190 (278)
Q Consensus 113 I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~gr~~~~~aAAclY~acR~~~~p~tl~eia~~~~~v-~~~~i~~~~~~ 190 (278)
|.++|+.++++.....+ +|++........=....-+-.|.-++. ....++.|||.. .|- +...+.+.|++
T Consensus 23 ~~~lA~~~~~S~~~l~r---~fk~~~G~s~~~~~~~~Rl~~A~~lL~----~~~~si~~IA~~-~Gf~~~s~F~r~Fk~ 93 (107)
T 2k9s_A 23 IASVAQHVCLSPSRLSH---LFRQQLGISVLSWREDQRISQAKLLLS----TTRMPIATVGRN-VGFDDQLYFSRVFKK 93 (107)
T ss_dssp HHHHHHHTTSCHHHHHH---HHHHHHSSCHHHHHHHHHHHHHHHHHH----HCCCCHHHHHHH-TTCCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHH---HHHHHHCcCHHHHHHHHHHHHHHHHHH----cCCCCHHHHHHH-hCCCCHHHHHHHHHH
Confidence 67888999998655443 666654332110001112222333322 245889999884 665 56777776665
No 255
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.67 E-value=9.5 Score=29.56 Aligned_cols=31 Identities=29% Similarity=0.566 Sum_probs=21.3
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCccccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~ 34 (278)
..|-+||+...--....-|..+|.+|.-|-.
T Consensus 30 ~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR 60 (141)
T 2crr_A 30 KYCADCEAKGPRWASWNIGVFICIRCAGIHR 60 (141)
T ss_dssp SSCSSSCCSSCCSEETTTTEECCHHHHHHHH
T ss_pred CcCCCCCCCCCCeEEeccCeEEhhhhhHhHh
Confidence 4688898742223345678888998887763
No 256
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=35.96 E-value=43 Score=22.13 Aligned_cols=46 Identities=4% Similarity=-0.023 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQ 226 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 226 (278)
...|..++|.. +|++..+|.+..+ |. . .. +.+.+.+++..|+++.+
T Consensus 24 ~gltq~~lA~~-~gvs~~~is~~e~------g~-------~-~~-~~~~~~~ia~~l~v~~~ 69 (80)
T 3kz3_A 24 LGLSYESVADK-MGMGQSAVAALFN------GI-------N-AL-NAYNAALLAKILKVSVE 69 (80)
T ss_dssp HTCCHHHHHHH-TTSCHHHHHHHHT------TS-------S-CC-CHHHHHHHHHHHTSCGG
T ss_pred cCCCHHHHHHH-hCcCHHHHHHHHc------CC-------C-CC-CHHHHHHHHHHhCCCHH
Confidence 45789999995 9999998876532 11 1 11 23788899999988754
No 257
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=35.53 E-value=44 Score=25.77 Aligned_cols=33 Identities=15% Similarity=0.114 Sum_probs=28.2
Q ss_pred hcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Q 023713 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHL 195 (278)
Q Consensus 162 ~~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L 195 (278)
+.+-+.|..|+|.. +|++..++.+.+++|.+.=
T Consensus 13 ~~~~~~s~~~la~~-lg~s~~tv~~rl~~L~~~g 45 (162)
T 3i4p_A 13 QEDSTLAVADLAKK-VGLSTTPCWRRIQKMEEDG 45 (162)
T ss_dssp TTCSCSCHHHHHHH-HTCCHHHHHHHHHHHHHTT
T ss_pred HHCCCCCHHHHHHH-HCcCHHHHHHHHHHHHHCC
Confidence 45667899999995 9999999999999997643
No 258
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=35.45 E-value=74 Score=19.92 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQA 227 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v 227 (278)
...|..++|.. +|++..+|.+..+ |. .+ |...+.+++..|+++.+.
T Consensus 15 ~glsq~~lA~~-~gis~~~i~~~e~------g~-------~~---~~~~l~~i~~~l~~~~~~ 60 (71)
T 1zug_A 15 LKMTQTELATK-AGVKQQSIQLIEA------GV-------TK---RPRFLFEIAMALNCDPVW 60 (71)
T ss_dssp TTCCHHHHHHH-HTSCHHHHHHHHT------TC-------CS---SCSTHHHHHHHTTSCHHH
T ss_pred cCCCHHHHHHH-hCCCHHHHHHHHc------CC-------CC---ChHHHHHHHHHHCCCHHH
Confidence 45789999995 8999988876532 21 11 122389999999998654
No 259
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=35.22 E-value=21 Score=26.27 Aligned_cols=25 Identities=24% Similarity=0.563 Sum_probs=18.5
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCccccccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAY 36 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~e~ 36 (278)
..|..|++. .+..+|-.||.|-=++
T Consensus 25 ~~C~~C~~~--------~~~W~CL~CG~vgCgr 49 (109)
T 3c5k_A 25 QPCGDCGTI--------QENWVCLSCYQVYCGR 49 (109)
T ss_dssp CCCTTTCCC--------SSEEEETTTCCEEECT
T ss_pred CcCccccCC--------CCeeeeeecCccccCC
Confidence 468999873 2467899999997543
No 260
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=35.17 E-value=1.1e+02 Score=22.98 Aligned_cols=51 Identities=16% Similarity=0.300 Sum_probs=29.7
Q ss_pred CCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHH
Q 023713 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQ 226 (278)
Q Consensus 164 ~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 226 (278)
+-|.|+.||++. ++++..++.+.++.|.+. |+ +-..+|.| +=...+.|.++
T Consensus 50 ~~~~t~~eLa~~-l~~~~~tvsr~v~~Le~~-gl-------Vr~~~~~D---rR~~~v~LT~~ 100 (148)
T 4fx0_A 50 GIDLTMSELAAR-IGVERTTLTRNLEVMRRD-GL-------VRVMAGAD---ARCKRIELTAK 100 (148)
T ss_dssp ----CHHHHHHH-HTCCHHHHHHHHHHHHHT-TS-------BC--------------CCBCHH
T ss_pred CCCcCHHHHHHH-HCCChhhHHHHHHHHHHC-CC-------EEeeCCCC---CCeeEEEECHH
Confidence 357999999995 999999999999999765 54 22334554 33556778765
No 261
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=35.12 E-value=46 Score=24.69 Aligned_cols=31 Identities=6% Similarity=0.059 Sum_probs=26.8
Q ss_pred hcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Q 023713 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193 (278)
Q Consensus 162 ~~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~ 193 (278)
.++-|.|+.||++. ++++..++.+.++.|.+
T Consensus 50 ~~~~~~t~~eLa~~-l~i~~~tvs~~l~~Le~ 80 (150)
T 3fm5_A 50 EQAEGVNQRGVAAT-MGLDPSQIVGLVDELEE 80 (150)
T ss_dssp HSTTCCCSHHHHHH-HTCCHHHHHHHHHHHHT
T ss_pred hCCCCcCHHHHHHH-HCCCHhHHHHHHHHHHH
Confidence 35567899999995 99999999999999875
No 262
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=35.10 E-value=23 Score=32.19 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=22.8
Q ss_pred CCCCCCCCC-CceeEeCCCCceEcCCCcc
Q 023713 4 SYCADCKRL-TEVVFDHSAGDTICSECGL 31 (278)
Q Consensus 4 ~~Cp~Cg~~-~~vv~D~~~G~~vC~~CG~ 31 (278)
..||-|+.. +++.+++..|.+.|-.||.
T Consensus 35 ~~CPfh~ektpSf~V~~~k~~~~CFgCg~ 63 (407)
T 2au3_A 35 TNCPFHPDDTPSFYVSPSKQIFKCFGCGV 63 (407)
T ss_dssp ECCSSSCCSSCCEEEETTTTEEEETTTCC
T ss_pred eeCcCCCCCCCeEEEECCCCEEEECCCCC
Confidence 369999853 3578888999999999993
No 263
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}
Probab=34.72 E-value=15 Score=24.61 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=13.6
Q ss_pred CCCCceEcCCCccccc
Q 023713 19 HSAGDTICSECGLVLE 34 (278)
Q Consensus 19 ~~~G~~vC~~CG~Vl~ 34 (278)
...|...|.-||+...
T Consensus 36 ~~~g~~~CpYCg~~f~ 51 (67)
T 2jrr_A 36 EDTGWVECPYCDCKYV 51 (67)
T ss_dssp TTTSEEEETTTTEEEE
T ss_pred CCCCeEECCCCCCEEE
Confidence 3579999999999874
No 264
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.69 E-value=11 Score=29.51 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=20.3
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCccccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~ 34 (278)
..|-+||+...--....-|..+|.+|.-|-.
T Consensus 30 ~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR 60 (149)
T 2crw_A 30 KVCFDCGAKNPSWASITYGVFLCIDCSGSHR 60 (149)
T ss_dssp SBCSSSCCBSCCCEETTTTEECCHHHHHHHH
T ss_pred CcCCCCcCCCCCcEEeccCEEEchhcchhhc
Confidence 5688888742222334668888888877753
No 265
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=34.64 E-value=71 Score=20.34 Aligned_cols=46 Identities=9% Similarity=0.063 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHHH
Q 023713 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQA 227 (278)
Q Consensus 166 p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v 227 (278)
..|..++|.. +|++..+|.+..+ |.. . .+.+.+.+++..|+++.+.
T Consensus 18 gls~~~lA~~-~gis~~~i~~~e~------g~~------~---~~~~~l~~ia~~l~~~~~~ 63 (76)
T 1adr_A 18 KIRQAALGKM-VGVSNVAISQWER------SET------E---PNGENLLALSKALQCSPDY 63 (76)
T ss_dssp TCCHHHHHHH-HTSCHHHHHHHHT------TSS------C---CCHHHHHHHHHHTTSCHHH
T ss_pred CCCHHHHHHH-HCcCHHHHHHHHc------CCC------C---CCHHHHHHHHHHHCcCHHH
Confidence 4689999995 8999988876532 211 1 1357789999999998654
No 266
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=34.51 E-value=78 Score=20.23 Aligned_cols=47 Identities=13% Similarity=0.237 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQA 227 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v 227 (278)
...|..++|.. +|++..+|.+..+ |. . ..+.+.+.+++..|+++.+.
T Consensus 22 ~glsq~~lA~~-~gis~~~i~~~e~------g~-------~--~~~~~~l~~la~~l~~~~~~ 68 (77)
T 2b5a_A 22 KGVSQEELADL-AGLHRTYISEVER------GD-------R--NISLINIHKICAALDIPAST 68 (77)
T ss_dssp TTCCHHHHHHH-HTCCHHHHHHHHT------TC-------S--CCBHHHHHHHHHHTTCCHHH
T ss_pred cCCCHHHHHHH-HCCCHHHHHHHHC------CC-------C--CCCHHHHHHHHHHhCcCHHH
Confidence 45789999995 8999988877642 21 1 12457889999999998653
No 267
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=34.08 E-value=93 Score=25.28 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhh
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~ 198 (278)
...|.+|||.. +++++.++....+.+.+.||..
T Consensus 187 ~g~s~~eIa~~-l~is~~tV~~~~~~~~~kl~~~ 219 (234)
T 1l3l_A 187 VGKTMEEIADV-EGVKYNSVRVKLREAMKRFDVR 219 (234)
T ss_dssp TTCCHHHHHHH-HTCCHHHHHHHHHHHHHHHTCS
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHHHHHHHhCCC
Confidence 45689999996 9999999999999999999864
No 268
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=34.07 E-value=55 Score=24.18 Aligned_cols=28 Identities=11% Similarity=0.088 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 166 p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
|.+..||+.. ++++..++.+.++.|.+.
T Consensus 54 ~~t~~ela~~-l~~~~~~vs~~l~~Le~~ 81 (152)
T 3bj6_A 54 GATAPQLGAA-LQMKRQYISRILQEVQRA 81 (152)
T ss_dssp TEEHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 8999999995 999999999999999864
No 269
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=33.74 E-value=12 Score=24.20 Aligned_cols=22 Identities=27% Similarity=0.910 Sum_probs=14.6
Q ss_pred CCCCCCCCCceeEeCCCCceEcCCCcc
Q 023713 5 YCADCKRLTEVVFDHSAGDTICSECGL 31 (278)
Q Consensus 5 ~Cp~Cg~~~~vv~D~~~G~~vC~~CG~ 31 (278)
.|..||+. + +- --..+|..||.
T Consensus 19 ~CrRCG~~-s--yH--~qK~~Ca~CGy 40 (57)
T 1vq8_1 19 KCRRCGEK-S--YH--TKKKVCSSCGF 40 (57)
T ss_dssp ECTTTCSE-E--EE--TTTTEETTTCT
T ss_pred cccccCCh-h--hh--ccccccccccC
Confidence 58888873 2 32 22678888887
No 270
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=33.66 E-value=34 Score=24.03 Aligned_cols=31 Identities=13% Similarity=-0.047 Sum_probs=26.2
Q ss_pred CCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Q 023713 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKHL 195 (278)
Q Consensus 164 ~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L 195 (278)
.-..++.|+|.. ++++..+|++-+.+|.+.=
T Consensus 14 ~g~vsv~eLA~~-l~VS~~TIRrDL~~Le~~G 44 (87)
T 2k02_A 14 QGRMEAKQLSAR-LQTPQPLIDAMLERMEAMG 44 (87)
T ss_dssp SCSEEHHHHHHH-TTCCHHHHHHHHHHHHTTC
T ss_pred cCCCcHHHHHHH-HCcCHHHHHHHHHHHHHCC
Confidence 456899999995 9999999999999887543
No 271
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=33.65 E-value=46 Score=22.90 Aligned_cols=29 Identities=10% Similarity=0.076 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
-+.+..||++. ++++..++.+.++.|.+.
T Consensus 33 ~~~s~~ela~~-l~is~~tv~~~l~~L~~~ 61 (109)
T 1sfx_A 33 GGMRVSEIARE-LDLSARFVRDRLKVLLKR 61 (109)
T ss_dssp CCBCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 46899999995 999999999999999763
No 272
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=33.59 E-value=15 Score=24.13 Aligned_cols=23 Identities=26% Similarity=0.895 Sum_probs=14.4
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCcc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGL 31 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~ 31 (278)
..|..||+. + +- --...|..||.
T Consensus 18 ~lCrRCG~~-s--yH--~qK~~Ca~CGy 40 (62)
T 3j21_e 18 IRCRRCGRV-S--YN--VKKGYCAACGF 40 (62)
T ss_dssp CBCSSSCSB-C--EE--TTTTEETTTCT
T ss_pred eeecccCcc-h--hc--cccccccccCC
Confidence 468888873 2 22 23567888886
No 273
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=33.49 E-value=1.2e+02 Score=21.00 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=15.4
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRA 187 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~ 187 (278)
...|..++|.. +|++..+|.+.
T Consensus 13 ~gltq~~lA~~-~gis~~~i~~~ 34 (111)
T 1b0n_A 13 KGYSLSELAEK-AGVAKSYLSSI 34 (111)
T ss_dssp TTCCHHHHHHH-HTCCHHHHHHH
T ss_pred cCCCHHHHHHH-HCcCHHHHHHH
Confidence 34677888874 78887777655
No 274
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=33.37 E-value=67 Score=23.66 Aligned_cols=28 Identities=7% Similarity=0.046 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVK 193 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~ 193 (278)
-+.++.|||.. ++++..++.+.++.|.+
T Consensus 21 ~~~~~~ela~~-l~vs~~tvs~~l~~Le~ 48 (142)
T 1on2_A 21 GYARVSDIAEA-LAVHPSSVTKMVQKLDK 48 (142)
T ss_dssp SSCCHHHHHHH-HTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHH-hCCCHHHHHHHHHHHHH
Confidence 46899999995 99999999999999976
No 275
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=33.34 E-value=23 Score=26.27 Aligned_cols=26 Identities=31% Similarity=0.672 Sum_probs=18.6
Q ss_pred CCCCCCCCCCceeEeCCCCce-EcCCCcccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDT-ICSECGLVL 33 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~-vC~~CG~Vl 33 (278)
.+|++||.. +....-.. .|+.||.-.
T Consensus 74 ~~C~~CG~~----~e~~~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 74 LECKDCSHV----FKPNALDYGVCEKCHSKN 100 (119)
T ss_dssp EECSSSSCE----ECSCCSTTCCCSSSSSCC
T ss_pred EEcCCCCCE----EeCCCCCCCcCccccCCC
Confidence 579999972 33334456 899999874
No 276
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=33.12 E-value=70 Score=21.97 Aligned_cols=28 Identities=11% Similarity=0.309 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVK 193 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~ 193 (278)
-|.+..||++. ++++..++.+..+.|.+
T Consensus 35 ~~~~~~ela~~-l~is~~tvs~~L~~L~~ 62 (98)
T 3jth_A 35 QELSVGELCAK-LQLSQSALSQHLAWLRR 62 (98)
T ss_dssp SCEEHHHHHHH-HTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 58999999995 89999999999999975
No 277
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=33.07 E-value=81 Score=20.64 Aligned_cols=42 Identities=7% Similarity=0.030 Sum_probs=31.9
Q ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcC--CCHH
Q 023713 168 TVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLG--MTNQ 226 (278)
Q Consensus 168 tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~--l~~~ 226 (278)
|..++|.. +|++..+|.+..+- . . .|.+.+.+++..|+ ++.+
T Consensus 13 sq~~lA~~-lgvs~~~is~~e~g------~-------~---~p~~~l~~ia~~l~~~v~~~ 56 (79)
T 3bd1_A 13 SVSALAAS-LGVRQSAISNWRAR------G-------R---VPAERCIDIERVTNGAVICR 56 (79)
T ss_dssp SHHHHHHH-HTCCHHHHHHHHHH------T-------C---CCGGGHHHHHHHTTTSSCHH
T ss_pred CHHHHHHH-HCCCHHHHHHHHHC------C-------C---CCHHHHHHHHHHHCCCCcHH
Confidence 89999995 99999999877542 1 1 13577889999999 7754
No 278
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=32.92 E-value=50 Score=24.89 Aligned_cols=31 Identities=29% Similarity=0.362 Sum_probs=26.9
Q ss_pred cCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 163 ENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 163 ~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
.+-+.|..|||+. +|++..++.+.+++|.+.
T Consensus 20 ~~~~~s~~ela~~-lg~s~~tv~~~l~~L~~~ 50 (151)
T 2dbb_A 20 ENSRLTYRELADI-LNTTRQRIARRIDKLKKL 50 (151)
T ss_dssp HCTTCCHHHHHHH-TTSCHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 3457999999995 999999999999999764
No 279
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=32.90 E-value=72 Score=26.16 Aligned_cols=33 Identities=9% Similarity=0.057 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhh
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~ 198 (278)
...|.+|||.. +++++.++....+.+.+.|+..
T Consensus 189 ~G~s~~eIa~~-l~is~~tV~~~~~~~~~kl~~~ 221 (237)
T 3szt_A 189 VGKTYGEIGLI-LSIDQRTVKFHIVNAMRKLNSS 221 (237)
T ss_dssp TTCCHHHHHHH-HTSCHHHHHHHHHHHHHHTTCS
T ss_pred cCCCHHHHHHH-HCCCHHHHHHHHHHHHHHhCCC
Confidence 45789999995 9999999999999999999864
No 280
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=32.88 E-value=54 Score=22.32 Aligned_cols=30 Identities=7% Similarity=0.045 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHL 195 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L 195 (278)
-|.++.||+.. ++++..++.+..+.|.+.-
T Consensus 29 ~~~~~~ela~~-l~is~~tvs~~l~~L~~~g 58 (100)
T 1ub9_A 29 RKAPFSQIQKV-LDLTPGNLDSHIRVLERNG 58 (100)
T ss_dssp SEEEHHHHHHH-TTCCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHH-HCcCHHHHHHHHHHHHHCC
Confidence 37899999995 9999999999999997753
No 281
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=32.85 E-value=53 Score=21.11 Aligned_cols=46 Identities=11% Similarity=0.051 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQ 226 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 226 (278)
...|..|+|.. +|++..+|.+..+ |. . ..+.+.+.+++..|+++.+
T Consensus 20 ~glsq~~lA~~-~gis~~~is~~e~------g~-------~--~~~~~~l~~ia~~l~v~~~ 65 (73)
T 3omt_A 20 KGKTNLWLTET-LDKNKTTVSKWCT------ND-------V--QPSLETLFDIAEALNVDVR 65 (73)
T ss_dssp HTCCHHHHHHH-TTCCHHHHHHHHT------TS-------S--CCCHHHHHHHHHHHTSCGG
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHc------CC-------C--CCCHHHHHHHHHHHCcCHH
Confidence 34689999994 8999999877643 11 1 1235778899998888753
No 282
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=32.81 E-value=74 Score=20.94 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQA 227 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v 227 (278)
...|+.++|.. ++++...|.+..+ |.. .....+.+.+++..|+++.+.
T Consensus 22 ~gltq~elA~~-~gis~~~is~~E~------G~~--------~~p~~~~l~~ia~~l~v~~~~ 69 (78)
T 3qq6_A 22 KGYSLSELAEK-AGVAKSYLSSIER------NLQ--------TNPSIQFLEKVSAVLDVSVHT 69 (78)
T ss_dssp TTCCHHHHHHH-HTCCHHHHHHHHT------TSC--------CCCBHHHHHHHHHHHTCCHHH
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHc------CCC--------CCCCHHHHHHHHHHHCcCHHH
Confidence 45799999994 8999988876533 201 112457899999999998653
No 283
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=32.78 E-value=50 Score=22.77 Aligned_cols=29 Identities=17% Similarity=0.178 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
-|.+..||++. ++++..++.+.++.|.+.
T Consensus 42 ~~~~~~eLa~~-l~is~~tv~~~L~~L~~~ 70 (96)
T 1y0u_A 42 KGRSEEEIMQT-LSLSKKQLDYHLKVLEAG 70 (96)
T ss_dssp TTCCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 46899999995 899999999999998754
No 284
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=32.75 E-value=66 Score=23.65 Aligned_cols=28 Identities=11% Similarity=-0.043 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 166 p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
|.++.|++.. ++++..++.+.++.|.+.
T Consensus 56 ~~t~~ela~~-l~~~~~tvs~~l~~Le~~ 83 (150)
T 2rdp_A 56 DLTVGELSNK-MYLACSTTTDLVDRMERN 83 (150)
T ss_dssp SBCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHH-HCCCchhHHHHHHHHHHC
Confidence 7999999995 999999999999999874
No 285
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=32.73 E-value=47 Score=24.22 Aligned_cols=33 Identities=9% Similarity=0.164 Sum_probs=27.3
Q ss_pred HhcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 161 RQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 161 R~~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
+..+-+.++.||++. ++++..++.+.++.|.+.
T Consensus 48 ~~~~~~~t~~eLa~~-l~~~~~tvs~~l~~Le~~ 80 (127)
T 2frh_A 48 ENKEKEYYLKDIINH-LNYKQPQVVKAVKILSQE 80 (127)
T ss_dssp HTCCSEEEHHHHHHH-SSSHHHHHHHHHHHHHHT
T ss_pred hccCCCcCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 333467999999995 999999999999998753
No 286
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}
Probab=32.71 E-value=18 Score=25.08 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=16.7
Q ss_pred CceeEeC--CCCceEcCCCccccc
Q 023713 13 TEVVFDH--SAGDTICSECGLVLE 34 (278)
Q Consensus 13 ~~vv~D~--~~G~~vC~~CG~Vl~ 34 (278)
+.|-+|- ..|...|.-||+.+.
T Consensus 41 PrVyL~ld~~~g~~~CpYCg~~f~ 64 (80)
T 2jvm_A 41 PRVWLSIPHETGFVECGYCDRRYI 64 (80)
T ss_dssp CCEEEECCTTTCEEECSSSSCEEE
T ss_pred CEEEEEccCCCCeEECCCCCCEEE
Confidence 4555554 589999999999874
No 287
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=32.70 E-value=79 Score=25.75 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhh
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~ 198 (278)
...|.+|||.. ++++..++....+.+.+.|+..
T Consensus 189 ~g~s~~eIa~~-l~is~~tV~~~~~~~~~kl~~~ 221 (236)
T 2q0o_A 189 KGKTASVTANL-TGINARTVQHYLDKARAKLDAE 221 (236)
T ss_dssp TTCCHHHHHHH-HCCCHHHHHHHHHHHHHHHTCS
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHHHHHHHhCCC
Confidence 35689999996 9999999999999999999864
No 288
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=32.69 E-value=18 Score=27.89 Aligned_cols=23 Identities=26% Similarity=0.733 Sum_probs=16.1
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLV 32 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~V 32 (278)
.+|+.||. +.+ +. ..+|..||.-
T Consensus 48 ~rC~~CG~---~~~-PP--r~~Cp~C~s~ 70 (145)
T 3irb_A 48 SKCSKCGR---IFV-PA--RSYCEHCFVK 70 (145)
T ss_dssp EECTTTCC---EEE-SC--CSEETTTTEE
T ss_pred EEeCCCCc---EEc-Cc--hhhCcCCCCC
Confidence 57999997 344 22 3579999964
No 289
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=38.81 E-value=9.4 Score=25.74 Aligned_cols=41 Identities=10% Similarity=0.284 Sum_probs=34.1
Q ss_pred HHHHHHHhcCC-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Q 023713 155 CLYIACRQENK-PRTVKEFCSVANGTTKKEIGRAKEFIVKHLE 196 (278)
Q Consensus 155 clY~acR~~~~-p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~ 196 (278)
.|..+|++.|. |-|+..||.. ++=++.++...|+.|.+.+.
T Consensus 24 ~IL~~cq~~G~s~~tfa~iA~~-Lnks~~QV~~RF~~Lm~Lf~ 65 (70)
T 2lr8_A 24 VILLECQKRGPSSKTFAYLAAK-LDKNPNQVSERFQQLMKLFE 65 (70)
Confidence 46778998886 7899999885 78899999999999987764
No 290
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=32.49 E-value=68 Score=20.62 Aligned_cols=48 Identities=15% Similarity=0.315 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQA 227 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v 227 (278)
...|..++|.. +|++..+|.+..+ | + .. ..+.+.+.+++..|+++.+.
T Consensus 19 ~g~sq~~lA~~-~gis~~~i~~~e~------g-~------~~-~~~~~~l~~ia~~l~~~~~~ 66 (78)
T 3b7h_A 19 QNLTINRVATL-AGLNQSTVNAMFE------G-R------SK-RPTITTIRKVCGTLGISVHD 66 (78)
T ss_dssp TTCCHHHHHHH-HTCCHHHHHHHHC------T-T------CC-CCCHHHHHHHHHHHTCCHHH
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHc------C-C------CC-CCCHHHHHHHHHHcCCCHHH
Confidence 45789999995 8999988876642 1 1 10 12357788999999998653
No 291
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=32.49 E-value=48 Score=24.66 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLE 196 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~ 196 (278)
...|.+|||.. +|++..++.+.+.+..+.|.
T Consensus 123 ~g~s~~EIA~~-lgis~~tV~~~~~ra~~~Lr 153 (164)
T 3mzy_A 123 RGYSYREIATI-LSKNLKSIDNTIQRIRKKSE 153 (164)
T ss_dssp TTCCHHHHHHH-HTCCHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHH-HCCCHHHHHHHHHHHHHHHH
Confidence 45699999995 99999998877665555443
No 292
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=32.46 E-value=13 Score=29.48 Aligned_cols=31 Identities=23% Similarity=0.380 Sum_probs=21.3
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCccccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~ 34 (278)
..|-+||+...--....-|..+|.+|.-|-.
T Consensus 23 ~~CaDCga~~P~WaS~nlGvflCi~CSGiHR 53 (163)
T 3sub_A 23 NKCFDCGISNPDWVSVNHGIFLCINCSGVHR 53 (163)
T ss_dssp GBCTTTCCBSCCEEETTTTEEECHHHHHHHH
T ss_pred CccccCCCCCCCeEEecCCeeEHHhhhHHhc
Confidence 4688898742223345678889999987753
No 293
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=32.18 E-value=63 Score=23.58 Aligned_cols=28 Identities=7% Similarity=0.057 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 166 p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
|.++.||+.. ++++..++.+.++.|.+.
T Consensus 43 ~~t~~~la~~-l~~s~~~vs~~l~~Le~~ 70 (144)
T 1lj9_A 43 GIIQEKIAEL-IKVDRTTAARAIKRLEEQ 70 (144)
T ss_dssp TEEHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHH-HCCCHhHHHHHHHHHHHC
Confidence 7999999995 999999999999999875
No 294
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=32.17 E-value=1.4e+02 Score=21.34 Aligned_cols=49 Identities=12% Similarity=-0.012 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHhhcCCCHH-------------HHHHHHHHHHHhhhcC-------CCCChhHHHHHHH
Q 023713 207 TIHASDYLRRFCSNLGMTNQ-------------AVKAAQEAVQKSEDLD-------IRLILVFFSLFLV 255 (278)
Q Consensus 207 ~~~p~~~i~r~~~~L~l~~~-------------v~~~A~~i~~~~~~~~-------~Gr~P~~iaaA~v 255 (278)
.++|+..+...|..++++.+ ..+.|..|++.+.+.. .||...+|.-|+=
T Consensus 4 ~it~~~I~~~Va~~f~v~~~dl~s~~R~~~i~~aRqiAmYL~r~~t~~Sl~~IG~~fgRDHsTV~ha~~ 72 (101)
T 3pvv_A 4 MISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQR 72 (101)
T ss_dssp -CCHHHHHHHHHHHTTCCHHHHHSSCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCHHHHhCCCCCchhhHHHHHHHHHHHHHhCCCHHHHHHHHCCCHHHHHHHHH
Confidence 46788888889999998854 3467777888766543 5899999888775
No 295
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=32.01 E-value=1.2e+02 Score=20.96 Aligned_cols=48 Identities=8% Similarity=0.084 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhh
Q 023713 149 EAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198 (278)
Q Consensus 149 ~~~aAAclY~acR~~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~ 198 (278)
-...|.-||-+.-..+ +.|++||.. .++.+..++..++-.|.++=++.
T Consensus 6 IG~nAG~VW~~L~~~~-~~s~~el~k-~t~l~d~el~lAIGWLaREdKI~ 53 (82)
T 2l02_A 6 VGANAGKVWHALNEAD-GISIPELAR-KVNLSVESTALAVGWLARENKVV 53 (82)
T ss_dssp HHHHHHHHHHHHHHCC-SBCHHHHHH-HHTCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHHHHHhccC-CCCHHHHHH-HhCCCHHHHHHHHHHHhccCcee
Confidence 4567788888877766 899999999 49999999999999998866554
No 296
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=31.91 E-value=83 Score=23.60 Aligned_cols=66 Identities=12% Similarity=0.049 Sum_probs=32.2
Q ss_pred CCHHHHHHHHcCCCHHHHHHH--HHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh
Q 023713 167 RTVKEFCSVANGTTKKEIGRA--KEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240 (278)
Q Consensus 167 ~tl~eia~~~~~v~~~~i~~~--~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~ 240 (278)
-++..||+ +++|+...+-.- ...+...+.+-. .+-..+...+..|+ .+|+++..+....+++.+++
T Consensus 62 ~~l~~iA~-~f~V~~~yl~~~~~~~~~~~el~ll~----~~rd~~v~~l~~r~---~~Ls~e~~~~l~~ii~~l~~ 129 (135)
T 3r1f_A 62 ATMAALAN-FFRIKAAYFTDDEYYEKLDKELQWLC----TMRDDGVRRIAQRA---HGLPSAAQQKVLDRIDELRR 129 (135)
T ss_dssp HHHHHHHH-HHTSCTHHHHCHHHHHHHHHHHHHHH----HTTSTTHHHHHHHH---TSCCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHH-HhCCCHHHHcCCcchhhHHHHHHHHH----HHhhhhHHHHHHHH---cCCCHHHHHHHHHHHHHHHH
Confidence 34667777 478876555421 111222221110 01111223333443 36888888877777777654
No 297
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=31.79 E-value=74 Score=20.86 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQA 227 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v 227 (278)
...|+.|+|.. +|++..+|.+..+ |. . ..+.+.+.+++..|+++.+.
T Consensus 26 ~gltq~elA~~-~gis~~~is~~e~------g~-------~--~~~~~~l~~l~~~l~~~~~~ 72 (83)
T 3f6w_A 26 AGITQKELAAR-LGRPQSFVSKTEN------AE-------R--RLDVIEFMDFCRGIGTDPYA 72 (83)
T ss_dssp HTCCHHHHHHH-HTSCHHHHHHHHT------TS-------S--CCCHHHHHHHHHHHTCCHHH
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHC------CC-------C--CCCHHHHHHHHHHcCCCHHH
Confidence 34789999995 8999988876633 21 1 12357889999999998754
No 298
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=31.73 E-value=49 Score=24.32 Aligned_cols=28 Identities=11% Similarity=-0.040 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 166 p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
+.+..|+++. ++++..++.+.++.|.+.
T Consensus 54 ~~~~~~la~~-l~~~~~tvs~~l~~L~~~ 81 (147)
T 1z91_A 54 TLTVKKMGEQ-LYLDSGTLTPMLKRMEQQ 81 (147)
T ss_dssp EEEHHHHHHT-TTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHH-HCCCcCcHHHHHHHHHHC
Confidence 8899999995 999999999999999875
No 299
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=31.64 E-value=72 Score=23.06 Aligned_cols=28 Identities=7% Similarity=0.073 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 166 p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
|.+..|++.. ++++..++.+.++.|.+.
T Consensus 45 ~~~~~ela~~-l~is~~~vs~~l~~L~~~ 72 (142)
T 3bdd_A 45 PLHQLALQER-LQIDRAAVTRHLKLLEES 72 (142)
T ss_dssp SBCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 7999999995 999999999999999874
No 300
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=31.58 E-value=22 Score=27.52 Aligned_cols=23 Identities=26% Similarity=0.733 Sum_probs=16.3
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLV 32 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~V 32 (278)
.+|+.||. +.+ +. ..+|..||.-
T Consensus 48 ~rC~~CG~---~~f-PP--r~~Cp~C~s~ 70 (145)
T 2gnr_A 48 SKCSKCGR---IFV-PA--RSYCEHCFVK 70 (145)
T ss_dssp EECTTTCC---EEE-SC--CSEETTTTEE
T ss_pred EEECCCCc---EEe-CC--CCCCCCCCCC
Confidence 57999997 344 22 3489999965
No 301
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=31.52 E-value=88 Score=22.82 Aligned_cols=30 Identities=7% Similarity=0.036 Sum_probs=26.7
Q ss_pred CCCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 164 ~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
+-|.++.+|++. ++++..++.+.++.|.+.
T Consensus 48 ~~~~~~~~la~~-l~i~~~~vs~~l~~Le~~ 77 (147)
T 2hr3_A 48 GGDVTPSELAAA-ERMRSSNLAALLRELERG 77 (147)
T ss_dssp TSCBCHHHHHHH-TTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHH-hCCChhhHHHHHHHHHHC
Confidence 457999999995 999999999999999864
No 302
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=31.46 E-value=51 Score=24.69 Aligned_cols=31 Identities=3% Similarity=0.024 Sum_probs=26.7
Q ss_pred cCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 163 ENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 163 ~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
.+-+.|..|||+. +|++..++.+.+++|.+.
T Consensus 16 ~~~~~s~~ela~~-lg~s~~tv~~~l~~L~~~ 46 (144)
T 2cfx_A 16 KDSRLSMRELGRK-IKLSPPSVTERVRQLESF 46 (144)
T ss_dssp HCSCCCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 3457999999995 999999999999999763
No 303
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=31.18 E-value=60 Score=23.56 Aligned_cols=30 Identities=7% Similarity=0.038 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Q 023713 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLE 196 (278)
Q Consensus 166 p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~ 196 (278)
..|.+|||.. +|++..++........+.|.
T Consensus 41 g~s~~EIA~~-lgiS~~tV~~~l~ra~~kLr 70 (113)
T 1xsv_A 41 DYSLSEIADT-FNVSRQAVYDNIRRTGDLVE 70 (113)
T ss_dssp CCCHHHHHHH-TTCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHH-HCcCHHHHHHHHHHHHHHHH
Confidence 3689999995 99999888877666665554
No 304
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=31.15 E-value=52 Score=24.15 Aligned_cols=28 Identities=11% Similarity=-0.014 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 166 p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
|.|+.||++. ++++..++.+.++.|.+.
T Consensus 51 ~~t~~eLa~~-l~~~~~tvs~~l~~L~~~ 78 (142)
T 3ech_A 51 GLNLQDLGRQ-MCRDKALITRKIRELEGR 78 (142)
T ss_dssp TCCHHHHHHH-HC---CHHHHHHHHHHHT
T ss_pred CcCHHHHHHH-hCCCHHHHHHHHHHHHHC
Confidence 7999999995 999999999999999764
No 305
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Probab=31.11 E-value=17 Score=31.93 Aligned_cols=31 Identities=16% Similarity=0.212 Sum_probs=26.6
Q ss_pred CCCCceEcCCCcccc--cccccccccchhhccC
Q 023713 19 HSAGDTICSECGLVL--EAYSVDETSEWRIFAN 49 (278)
Q Consensus 19 ~~~G~~vC~~CG~Vl--~e~~id~~~ewr~f~~ 49 (278)
.+.|..+|..||.-| .+.-+|.|.-|.+|.+
T Consensus 205 ~~~G~Y~c~~cg~pLF~S~~KfdSg~GWPSF~~ 237 (313)
T 3e0m_A 205 FEEGIYVDITTGEPLFFAKDKFASGCGWPSFSR 237 (313)
T ss_dssp CCSEEEEETTTCCEEEEGGGBCCCCSSSCEESS
T ss_pred CCCeEEEecCCCccccCCCccccCCCCCcccCc
Confidence 478999999999988 5567899999999985
No 306
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=30.93 E-value=55 Score=24.18 Aligned_cols=30 Identities=7% Similarity=0.162 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 164 ~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
+-+.+..|+++. +|++..++.+.++.|.+.
T Consensus 16 ~~~~~~~ela~~-lg~s~~tv~~~l~~L~~~ 45 (141)
T 1i1g_A 16 DARTPFTEIAKK-LGISETAVRKRVKALEEK 45 (141)
T ss_dssp CTTCCHHHHHHH-HTSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 456899999995 899999999999999764
No 307
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=30.85 E-value=58 Score=24.44 Aligned_cols=31 Identities=13% Similarity=0.052 Sum_probs=26.8
Q ss_pred cCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 163 ENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 163 ~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
.+-+.+..|+|+. +|++..++.+.++.|.+.
T Consensus 14 ~~~~~~~~ela~~-lg~s~~tv~~~l~~L~~~ 44 (150)
T 2pn6_A 14 YNAKYSLDEIARE-IRIPKATLSYRIKKLEKD 44 (150)
T ss_dssp TCTTSCHHHHHHH-HTSCHHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 3457999999995 999999999999999764
No 308
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=30.85 E-value=21 Score=22.22 Aligned_cols=23 Identities=26% Similarity=0.712 Sum_probs=17.9
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCcccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVL 33 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl 33 (278)
..|..|+.. ++ .| +-|.+|+...
T Consensus 15 t~C~~C~k~---i~---~G-~kC~~Ck~~c 37 (49)
T 1kbe_A 15 QVCNVCQKS---MI---FG-VKCKHCRLKC 37 (49)
T ss_dssp CCCSSSCCS---SC---CE-EEETTTTEEE
T ss_pred cCccccCce---eE---Cc-CCCCCCCCcc
Confidence 679999972 44 56 7899999875
No 309
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=30.52 E-value=30 Score=23.88 Aligned_cols=27 Identities=30% Similarity=0.725 Sum_probs=19.4
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCccccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~ 34 (278)
..|..|+.. |..-.-.--|..||.|+=
T Consensus 22 ~~C~~C~~~----Fs~~~RrHHCR~CG~v~C 48 (84)
T 1z2q_A 22 PACNGCGCV----FTTTVRRHHCRNCGYVLC 48 (84)
T ss_dssp CBCTTTCCB----CCTTSCCEECTTTCCEEC
T ss_pred CCCcCcCCc----cccchhcccccCCCcEEC
Confidence 569999973 444566778888888874
No 310
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=30.52 E-value=1.1e+02 Score=20.70 Aligned_cols=45 Identities=11% Similarity=0.197 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHH
Q 023713 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQ 226 (278)
Q Consensus 166 p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 226 (278)
..|..++|.. +|++..+|.+..+ |.. .. ..+.+.+++..|+++.+
T Consensus 21 gltq~~lA~~-~gis~~~is~~e~------g~~--------~~-~~~~~~~i~~~l~v~~~ 65 (94)
T 2ict_A 21 NVSLREFARA-MEIAPSTASRLLT------GKA--------AL-TPEMAIKLSVVIGSSPQ 65 (94)
T ss_dssp TCCHHHHHHH-HTCCHHHHHHHHH------TSS--------CC-CHHHHHHHHHHTCSCHH
T ss_pred CCCHHHHHHH-hCCCHHHHHHHHc------CCC--------CC-CHHHHHHHHHHHCcCHH
Confidence 4689999995 8999999887643 211 11 25788999999999987
No 311
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=30.47 E-value=90 Score=22.64 Aligned_cols=31 Identities=13% Similarity=0.180 Sum_probs=27.3
Q ss_pred cCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 163 ENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 163 ~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
.+-|.+..||++. ++++..++.+.++.|.+.
T Consensus 49 ~~~~~t~~~la~~-l~~s~~~vs~~l~~L~~~ 79 (146)
T 2fbh_A 49 HRDSPTQRELAQS-VGVEGPTLARLLDGLESQ 79 (146)
T ss_dssp CSSCCBHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHH-hCCChhhHHHHHHHHHHC
Confidence 4568999999995 999999999999999864
No 312
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=30.43 E-value=56 Score=24.66 Aligned_cols=30 Identities=10% Similarity=0.215 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 164 ~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
+-+.+..|+|+. +|++..++.+.+++|.+.
T Consensus 19 ~~~~s~~ela~~-lg~s~~tv~~~l~~L~~~ 48 (151)
T 2cyy_A 19 DGKAPLREISKI-TGLAESTIHERIRKLRES 48 (151)
T ss_dssp CTTCCHHHHHHH-HCSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 457999999995 999999999999999764
No 313
>1y07_A Desulfoferrodoxin (RBO); beta-sheet, iron binding, oxidoreductase; 1.55A {Treponema pallidum subsp}
Probab=30.38 E-value=17 Score=27.51 Aligned_cols=29 Identities=14% Similarity=0.047 Sum_probs=14.7
Q ss_pred CCCCC-CCCCCceeEeCCCCceEcCCCcccccc
Q 023713 4 SYCAD-CKRLTEVVFDHSAGDTICSECGLVLEA 35 (278)
Q Consensus 4 ~~Cp~-Cg~~~~vv~D~~~G~~vC~~CG~Vl~e 35 (278)
.+|+. ||.. -.+.....|.++| ||.-++.
T Consensus 8 YkC~~~CGni-vev~~~g~~~l~C--CG~~m~~ 37 (128)
T 1y07_A 8 FLQKESAGFF-LGMDAPAGSSVAC--GSEVLRA 37 (128)
T ss_dssp ECC-----CE-EEESCCTTCEEEE--TTEEEEC
T ss_pred EECCCCCCCE-EEEEcCCCcceee--cCccccc
Confidence 57999 9962 1222356677777 8876643
No 314
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=30.38 E-value=71 Score=24.40 Aligned_cols=31 Identities=6% Similarity=0.086 Sum_probs=26.9
Q ss_pred cCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 163 ENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 163 ~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
.+-+.|+.||++. ++++..++.+.++.|.+.
T Consensus 65 ~~~~~t~~eLa~~-l~i~~~tvs~~l~~Le~~ 95 (166)
T 3deu_A 65 LPPDQSQIQLAKA-IGIEQPSLVRTLDQLEDK 95 (166)
T ss_dssp SCSSEEHHHHHHH-HTSCHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHH-HCCCHhhHHHHHHHHHHC
Confidence 4567999999995 999999999999999763
No 315
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=30.32 E-value=69 Score=23.98 Aligned_cols=29 Identities=7% Similarity=0.023 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
-|.++.||+.. ++++..++.+.++.|.+.
T Consensus 65 ~~~t~~ela~~-l~is~~tvs~~l~~Le~~ 93 (162)
T 3cjn_A 65 DGLPIGTLGIF-AVVEQSTLSRALDGLQAD 93 (162)
T ss_dssp CSEEHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHH-HCCChhHHHHHHHHHHHC
Confidence 37999999995 999999999999999874
No 316
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=30.29 E-value=1.6e+02 Score=21.56 Aligned_cols=73 Identities=7% Similarity=-0.054 Sum_probs=41.3
Q ss_pred CCC-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhcC
Q 023713 164 NKP-RTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLD 242 (278)
Q Consensus 164 ~~p-~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~ 242 (278)
+.| .|..+||+. ++++..++.++++.|.+.==+. .. .++.+- .+..+...|++=..+.+.-+.+...+..
T Consensus 48 ~~~~ps~~~LA~~-l~~s~~~V~~~l~~Le~kGlI~------~~-~~~~~~-g~~~~~Ydl~pl~~kL~~~~~~~~~~~~ 118 (128)
T 2vn2_A 48 GVLFPTPAELAER-MTVSAAECMEMVRRLLQKGMIA------IE-EHTDEQ-GIRNEKYTLEPLWEKLVHHLYTQAAQQG 118 (128)
T ss_dssp TCSSCCHHHHHHT-SSSCHHHHHHHHHHHHHTTSSE------EC-C-----------CEECHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHH-HCcCHHHHHHHHHHHHHCCCEE------EE-eEECCC-CcEEEEEehHHHHHHHHHHHHHHHHHHH
Confidence 434 799999994 9999999999999987643222 11 122222 5666777888777766665544443322
Q ss_pred -CCC
Q 023713 243 -IRL 245 (278)
Q Consensus 243 -~Gr 245 (278)
.||
T Consensus 119 ~~~~ 122 (128)
T 2vn2_A 119 ELGR 122 (128)
T ss_dssp CC--
T ss_pred HHhh
Confidence 454
No 317
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=30.24 E-value=27 Score=24.52 Aligned_cols=29 Identities=24% Similarity=0.623 Sum_probs=20.4
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCccccccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAY 36 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~e~ 36 (278)
..|..|+.. |..-.-.--|..||.|+=..
T Consensus 21 ~~C~~C~~~----F~~~~RrhhCr~CG~v~C~~ 49 (90)
T 3t7l_A 21 PNCMNCQVK----FTFTKRRHHCRACGKVFCGV 49 (90)
T ss_dssp CBCTTTCCB----CCSSSCCEECTTTCCEECGG
T ss_pred CcCcCCCCc----ccchhhCccccCCCCEECCc
Confidence 469999973 44445677888998888533
No 318
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=30.23 E-value=67 Score=23.26 Aligned_cols=28 Identities=0% Similarity=-0.051 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 166 p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
|.++.||++. ++++..++.+.++.|.+.
T Consensus 50 ~~t~~ela~~-l~~s~~~vs~~l~~Le~~ 77 (142)
T 2fbi_A 50 EMESYQLANQ-ACILRPSMTGVLARLERD 77 (142)
T ss_dssp SEEHHHHHHH-TTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHH-HCCCHhHHHHHHHHHHHC
Confidence 6999999995 999999999999999874
No 319
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=30.15 E-value=20 Score=22.74 Aligned_cols=21 Identities=19% Similarity=0.509 Sum_probs=14.0
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECG 30 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG 30 (278)
..||.|+....++. ..|..|+
T Consensus 10 ~~C~~C~GsG~~i~------~~C~~C~ 30 (53)
T 3lcz_A 10 TTCPNCNGSGREEP------EPCPKCL 30 (53)
T ss_dssp EECTTTTTSCEETT------EECTTTT
T ss_pred ccCcCCcccccCCC------CcCCCCC
Confidence 57999976455442 5677774
No 320
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=30.00 E-value=59 Score=20.80 Aligned_cols=46 Identities=20% Similarity=0.205 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQ 226 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 226 (278)
...|..++|.. +|++..+|.+..+ |. .. .+.+.+.+++..|+++.+
T Consensus 22 ~g~s~~~lA~~-~gis~~~i~~~e~------g~-------~~--~~~~~l~~ia~~l~~~~~ 67 (76)
T 3bs3_A 22 KQRTNRWLAEQ-MGKSENTISRWCS------NK-------SQ--PSLDMLVKVAELLNVDPR 67 (76)
T ss_dssp TTCCHHHHHHH-HTCCHHHHHHHHT------TS-------SC--CCHHHHHHHHHHHTSCGG
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHc------CC-------CC--CCHHHHHHHHHHHCcCHH
Confidence 45789999995 8999988876532 21 11 235778899999988754
No 321
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=29.83 E-value=1.1e+02 Score=19.65 Aligned_cols=46 Identities=13% Similarity=0.128 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQ 226 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 226 (278)
...|..++|.. +|++..+|.+..+ |. .....+.+.+++..|+++.+
T Consensus 14 ~glsq~~lA~~-~gis~~~i~~~e~------g~---------~~p~~~~l~~ia~~l~v~~~ 59 (77)
T 2k9q_A 14 LSLTAKSVAEE-MGISRQQLCNIEQ------SE---------TAPVVVKYIAFLRSKGVDLN 59 (77)
T ss_dssp HTCCHHHHHHH-HTSCHHHHHHHHT------CC---------SCCHHHHHHHHHHHTTCCHH
T ss_pred cCCCHHHHHHH-hCCCHHHHHHHHc------CC---------CCCCHHHHHHHHHHhCcCHH
Confidence 35789999994 8999988876532 11 11245788899999998865
No 322
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.80 E-value=40 Score=23.24 Aligned_cols=27 Identities=26% Similarity=0.596 Sum_probs=17.8
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCccccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~ 34 (278)
..|..|+.. |..-.-.--|..||.|+=
T Consensus 15 ~~C~~C~~~----F~~~~RrHHCR~CG~vfC 41 (84)
T 1x4u_A 15 GNCTGCSAT----FSVLKKRRSCSNCGNSFC 41 (84)
T ss_dssp SSCSSSCCC----CCSSSCCEECSSSCCEEC
T ss_pred CcCcCcCCc----cccchhhhhhcCCCcEEC
Confidence 579999973 333455566777777764
No 323
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=29.80 E-value=58 Score=24.55 Aligned_cols=31 Identities=16% Similarity=0.119 Sum_probs=26.9
Q ss_pred cCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 163 ENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 163 ~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
.+-+.|..|+|+. +|++..++.+.++.|.+.
T Consensus 19 ~~~~~s~~ela~~-lg~s~~tv~~~l~~L~~~ 49 (152)
T 2cg4_A 19 GNARTAYAELAKQ-FGVSPETIHVRVEKMKQA 49 (152)
T ss_dssp HCTTSCHHHHHHH-HTSCHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHH-HCcCHHHHHHHHHHHHHc
Confidence 3457899999995 999999999999999764
No 324
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=29.70 E-value=89 Score=22.12 Aligned_cols=28 Identities=11% Similarity=0.163 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVK 193 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~ 193 (278)
-|.++.||++. ++++..++.+.++.|.+
T Consensus 37 ~~~s~~eLa~~-lgis~stvs~~L~~L~~ 64 (108)
T 2kko_A 37 GERAVEAIATA-TGMNLTTASANLQALKS 64 (108)
T ss_dssp CCEEHHHHHHH-HTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 57899999995 89999999999999975
No 325
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=29.59 E-value=21 Score=22.43 Aligned_cols=31 Identities=26% Similarity=0.504 Sum_probs=18.8
Q ss_pred CCCCCCCCC----Cce-eEeCCCCceEcCCCccccc
Q 023713 4 SYCADCKRL----TEV-VFDHSAGDTICSECGLVLE 34 (278)
Q Consensus 4 ~~Cp~Cg~~----~~v-v~D~~~G~~vC~~CG~Vl~ 34 (278)
..|+.||.. ..+ .....+....|..||..+.
T Consensus 15 ~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~ 50 (62)
T 1vd4_A 15 FKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVE 50 (62)
T ss_dssp EECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCE
T ss_pred ccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccc
Confidence 358999862 001 1233455688999988764
No 326
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=29.51 E-value=73 Score=20.14 Aligned_cols=46 Identities=9% Similarity=0.162 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQ 226 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 226 (278)
...|..++|.. +|++..+|.+..+ |.. ..+.+.+.+++..|+++.+
T Consensus 25 ~g~s~~~lA~~-~gis~~~i~~~e~------g~~---------~~~~~~l~~l~~~l~~~~~ 70 (74)
T 1y7y_A 25 KGLSQETLAFL-SGLDRSYVGGVER------GQR---------NVSLVNILKLATALDIEPR 70 (74)
T ss_dssp TTCCHHHHHHH-HTCCHHHHHHHHT------TCS---------CCBHHHHHHHHHHTTSCGG
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHC------CCC---------CCCHHHHHHHHHHhCcCHH
Confidence 45789999995 8999988876532 111 1235678899999998754
No 327
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=29.48 E-value=89 Score=24.25 Aligned_cols=43 Identities=7% Similarity=0.030 Sum_probs=33.4
Q ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHHH
Q 023713 168 TVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQA 227 (278)
Q Consensus 168 tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v 227 (278)
|+.|+|+. +|++..+|.+..+ +.. .|.+.+.+++..|+++.+.
T Consensus 22 tq~elA~~-~Gis~~~i~~~e~------g~~----------~p~~~l~~ia~~~~v~~~~ 64 (189)
T 2fjr_A 22 QKIQLANH-FDIASSSLSNRYT------RGA----------ISYDFAAHCALETGANLQW 64 (189)
T ss_dssp SHHHHHHH-TTCCHHHHHHHHH------SSS----------CCHHHHHHHHHHHCCCHHH
T ss_pred CHHHHHHH-hCcCHHHHHHHHh------CCC----------CCHHHHHHHHHHHCCCHHH
Confidence 99999994 9999999887654 221 2367899999999998754
No 328
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=29.32 E-value=82 Score=22.88 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
-|.++.||+.. ++++..++.+.++.|.+.
T Consensus 46 ~~~~~~~la~~-l~~s~~tvs~~l~~L~~~ 74 (145)
T 2a61_A 46 GPKRPGELSVL-LGVAKSTVTGLVKRLEAD 74 (145)
T ss_dssp CCBCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHH-HCCCchhHHHHHHHHHHC
Confidence 37999999995 999999999999999874
No 329
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=29.26 E-value=28 Score=26.16 Aligned_cols=28 Identities=25% Similarity=0.642 Sum_probs=19.9
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCcccccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEA 35 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~e 35 (278)
..|..|+.. |..-.-.--|..||.|+=.
T Consensus 70 ~~C~~C~~~----Fs~~~RrHHCR~CG~vfC~ 97 (125)
T 1joc_A 70 QNCMACGKG----FSVTVRRHHCRQCGNIFCA 97 (125)
T ss_dssp CBCTTTCCB----CCSSSCCEECTTTCCEECG
T ss_pred CCCcCcCCc----cccccccccCCCCCeEECh
Confidence 469999973 4445566788888888743
No 330
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=29.19 E-value=81 Score=19.80 Aligned_cols=46 Identities=9% Similarity=0.043 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHH
Q 023713 165 KPRTVKEFCSVANG--TTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQ 226 (278)
Q Consensus 165 ~p~tl~eia~~~~~--v~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 226 (278)
...|+.|+|.. +| ++..+|.+..+ |.. . .+.+.+.+++..|+++.+
T Consensus 20 ~glsq~~lA~~-~g~~is~~~i~~~e~------g~~------~---~~~~~l~~la~~l~v~~~ 67 (71)
T 2ewt_A 20 QGLSLHGVEEK-SQGRWKAVVVGSYER------GDR------A---VTVQRLAELADFYGVPVQ 67 (71)
T ss_dssp TTCCHHHHHHH-TTTSSCHHHHHHHHH------TCS------C---CCHHHHHHHHHHHTSCGG
T ss_pred cCCCHHHHHHH-HCCcCCHHHHHHHHC------CCC------C---CCHHHHHHHHHHHCcCHH
Confidence 45789999995 89 99988876643 211 1 235778899999988753
No 331
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=29.16 E-value=1e+02 Score=20.04 Aligned_cols=47 Identities=11% Similarity=0.094 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQA 227 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v 227 (278)
...|+.++|.. +|++..+|.+..+ |.. ..+.+.+.+++..|+++.+.
T Consensus 23 ~glsq~~lA~~-~gis~~~i~~~e~------g~~---------~~~~~~l~~ia~~l~v~~~~ 69 (82)
T 3s8q_A 23 KGMTQEDLAYK-SNLDRTYISGIER------NSR---------NLTIKSLELIMKGLEVSDVV 69 (82)
T ss_dssp TTCCHHHHHHH-HTCCHHHHHHHHT------TCC---------CCBHHHHHHHHHHTTCCHHH
T ss_pred cCCCHHHHHHH-hCcCHHHHHHHHC------CCC---------CCCHHHHHHHHHHHCcCHHH
Confidence 45799999995 8999988876532 211 12467889999999998653
No 332
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=29.13 E-value=1.4e+02 Score=20.37 Aligned_cols=29 Identities=3% Similarity=-0.106 Sum_probs=25.3
Q ss_pred CCCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Q 023713 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193 (278)
Q Consensus 164 ~~p~tl~eia~~~~~v~~~~i~~~~~~l~~ 193 (278)
+.+.++.||++. ++++..++.+.++.|.+
T Consensus 28 ~~~~t~~eLa~~-l~i~~~tvs~~l~~Le~ 56 (95)
T 2qvo_A 28 GNDVYIQYIASK-VNSPHSYVWLIIKKFEE 56 (95)
T ss_dssp TCCEEHHHHHHH-SSSCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 445899999995 99999999999999865
No 333
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=28.87 E-value=66 Score=23.38 Aligned_cols=30 Identities=17% Similarity=0.155 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Q 023713 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLE 196 (278)
Q Consensus 166 p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~ 196 (278)
..|..|||.. +|++..++.+......+.|.
T Consensus 38 g~s~~EIA~~-lgiS~~tV~~~l~ra~~kLr 67 (113)
T 1s7o_A 38 DYSLAEIADE-FGVSRQAVYDNIKRTEKILE 67 (113)
T ss_dssp CCCHHHHHHH-HTCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHH-HCcCHHHHHHHHHHHHHHHH
Confidence 4689999995 99999988877776666554
No 334
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=28.87 E-value=60 Score=22.83 Aligned_cols=28 Identities=4% Similarity=0.112 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVK 193 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~ 193 (278)
-|.+..||++. ++++..++.+.++.|.+
T Consensus 33 ~~~~~~ela~~-l~is~~tv~~~l~~L~~ 60 (114)
T 2oqg_A 33 ADQSASSLATR-LPVSRQAIAKHLNALQA 60 (114)
T ss_dssp SCBCHHHHHHH-SSSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 46899999995 99999999999999975
No 335
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=28.75 E-value=1.2e+02 Score=20.58 Aligned_cols=49 Identities=6% Similarity=0.097 Sum_probs=34.4
Q ss_pred cCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHHH
Q 023713 163 ENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQA 227 (278)
Q Consensus 163 ~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v 227 (278)
.....|..++|.. +|++..+|.+..+ |.. .| ..+.+.+++..|+++.+.
T Consensus 19 ~~~glsq~~lA~~-~gis~~~is~~e~------G~~------~p---~~~~l~~ia~~l~v~~~~ 67 (94)
T 2kpj_A 19 AKSEKTQLEIAKS-IGVSPQTFNTWCK------GIA------IP---RMGKVQALADYFNINKSD 67 (94)
T ss_dssp TTSSSCHHHHHHH-HTCCHHHHHHHHT------TSC------CC---CHHHHHHHHHHHTCCTHH
T ss_pred HHcCCCHHHHHHH-HCcCHHHHHHHHh------CCC------CC---CHHHHHHHHHHHCcCHHH
Confidence 4456899999995 8999988877532 211 11 357788999999887543
No 336
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=28.70 E-value=94 Score=23.15 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
-+.+..||+.. ++++..++.+.++.|.+.
T Consensus 62 ~~~t~~ela~~-l~is~~tvs~~l~~Le~~ 90 (162)
T 2fa5_A 62 PGSSASEVSDR-TAMDKVAVSRAVARLLER 90 (162)
T ss_dssp TTCCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 47999999995 999999999999999764
No 337
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=28.66 E-value=1.2e+02 Score=19.97 Aligned_cols=45 Identities=9% Similarity=0.073 Sum_probs=32.2
Q ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHHH
Q 023713 168 TVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQA 227 (278)
Q Consensus 168 tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v 227 (278)
|+.++|.. .|++..+|.+..+ |. .+. ...+.+.+++..|+++.+.
T Consensus 29 sq~~lA~~-~gis~~~is~~E~------g~-------~~~-p~~~~l~~ia~~l~v~~~~ 73 (86)
T 2ofy_A 29 SMVTVAFD-AGISVETLRKIET------GR-------IAT-PAFFTIAAVARVLDLSLDD 73 (86)
T ss_dssp CHHHHHHH-HTCCHHHHHHHHT------TC-------CSS-CBHHHHHHHHHHTTCCHHH
T ss_pred CHHHHHHH-hCCCHHHHHHHHc------CC-------CCC-CCHHHHHHHHHHhCCCHHH
Confidence 89999994 8999998877633 11 111 2357789999999998653
No 338
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=28.54 E-value=78 Score=23.48 Aligned_cols=29 Identities=3% Similarity=0.092 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
-|.++.||++. ++++..++.+.++.|.+.
T Consensus 56 ~~~t~~ela~~-l~i~~~tvs~~l~~Le~~ 84 (155)
T 3cdh_A 56 DAMMITRLAKL-SLMEQSRMTRIVDQMDAR 84 (155)
T ss_dssp SCBCHHHHHHH-TTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 47999999995 999999999999999764
No 339
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=28.31 E-value=53 Score=24.29 Aligned_cols=34 Identities=12% Similarity=0.089 Sum_probs=22.0
Q ss_pred HHhcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 160 CRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 160 cR~~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
.+..+-|.|+.||+.. ++++..++.+.++.|.+.
T Consensus 51 ~~~~~~~~t~~eLa~~-l~~~~~~vs~~l~~L~~~ 84 (148)
T 3jw4_A 51 YENQESGIIQKDLAQF-FGRRGASITSMLQGLEKK 84 (148)
T ss_dssp HHHTTTCCCHHHHHHC-------CHHHHHHHHHHT
T ss_pred HhCCCCCCCHHHHHHH-HCCChhHHHHHHHHHHHC
Confidence 3333468999999994 999999999999999764
No 340
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=28.31 E-value=54 Score=24.59 Aligned_cols=31 Identities=3% Similarity=0.015 Sum_probs=26.9
Q ss_pred hcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Q 023713 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193 (278)
Q Consensus 162 ~~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~ 193 (278)
..+-|.|+.||+.. ++++..++.+.++.|.+
T Consensus 47 ~~~~~~t~~eLa~~-l~~~~~tvs~~v~~Le~ 77 (147)
T 4b8x_A 47 SKSGELPMSKIGER-LMVHPTSVTNTVDRLVR 77 (147)
T ss_dssp SGGGEEEHHHHHHH-HTCCHHHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHH-HCCCHHHHHHHHHHHHh
Confidence 34557999999995 99999999999999976
No 341
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=27.69 E-value=92 Score=22.75 Aligned_cols=28 Identities=14% Similarity=0.112 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 166 p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
|.|+.||++. ++++..++.+.++.|.+.
T Consensus 45 ~~t~~eLa~~-l~~~~~tvs~~l~~Le~~ 72 (145)
T 3g3z_A 45 SRTQKHIGEK-WSLPKQTVSGVCKTLAGQ 72 (145)
T ss_dssp SBCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 5999999995 999999999999999763
No 342
>2qsb_A UPF0147 protein TA0600; structural genomics, four-helix bundle, PSI-2, protein structure initiative; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728} SCOP: a.29.14.1
Probab=27.64 E-value=1.6e+02 Score=20.68 Aligned_cols=65 Identities=9% Similarity=0.185 Sum_probs=49.9
Q ss_pred chhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCH
Q 023713 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181 (278)
Q Consensus 102 ~er~l~~~~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~gr~~~~~aAAclY~acR~~~~p~tl~eia~~~~~v~~ 181 (278)
.+..+.++...++++.+--.+|.++...|.+.-..+.+.+ .++..-||.++++ |.||+. .-+++.
T Consensus 8 ~e~~ik~~~~~L~~I~~D~sVPRNIRraA~ea~~~L~~e~----~~~~vRAA~aIs~----------LDeISn-DPNmP~ 72 (89)
T 2qsb_A 8 DQNLFNEVMYLLDELSQDITVPKNVRKVAQDSKAKLSQEN----ESLDLRCATVLSM----------LDEMAN-DPNVPA 72 (89)
T ss_dssp HHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTCTT----SCHHHHHHHHHHH----------HHHHHT-CTTSCH
T ss_pred cHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHhCCC----cchhHHHHHHHHH----------HHHhhc-CCCCCh
Confidence 3567788888999999999999999999999988886654 4566677777775 667766 356654
No 343
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=27.60 E-value=88 Score=22.78 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=24.2
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHH
Q 023713 167 RTVKEFCSVANGTTKKEIGRAKEFIVK 193 (278)
Q Consensus 167 ~tl~eia~~~~~v~~~~i~~~~~~l~~ 193 (278)
.+..|||+. ++++..++.+.++.|.+
T Consensus 52 ~t~~eLa~~-l~~s~~tvs~~l~~L~~ 77 (146)
T 3tgn_A 52 LTNSELARR-LNVSQAAVTKAIKSLVK 77 (146)
T ss_dssp CCHHHHHHH-HTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HCCCHHHHHHHHHHHHH
Confidence 999999995 99999999999999975
No 344
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=27.43 E-value=37 Score=23.77 Aligned_cols=26 Identities=27% Similarity=0.570 Sum_probs=16.4
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCcccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVL 33 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl 33 (278)
..|..|+.. |..-.-.--|..||.|+
T Consensus 10 ~~C~~C~~~----F~~~~RrHHCR~CG~vf 35 (88)
T 1wfk_A 10 SRCYGCAVK----FTLFKKEYGCKNCGRAF 35 (88)
T ss_dssp SBCTTTCCB----CCSSSCEEECSSSCCEE
T ss_pred CCCcCcCCc----ccCccccccCCCCCCEE
Confidence 579999973 33335455666666665
No 345
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=27.40 E-value=71 Score=24.31 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 166 p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
+.++.||++. ++++..++.+.++.|.+.
T Consensus 59 ~~t~~eLa~~-l~is~~tvs~~l~~Le~~ 86 (168)
T 2nyx_A 59 PINLATLATL-LGVQPSATGRMVDRLVGA 86 (168)
T ss_dssp SEEHHHHHHH-HTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHH-hCCCHHHHHHHHHHHHHC
Confidence 7999999995 999999999999999764
No 346
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=27.23 E-value=63 Score=24.68 Aligned_cols=30 Identities=13% Similarity=-0.049 Sum_probs=26.2
Q ss_pred CCCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 164 ~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
+-+.|..|||+. +|++..++.+.++.|.+.
T Consensus 22 ~~~~s~~ela~~-lg~s~~tv~~~l~~L~~~ 51 (162)
T 2p5v_A 22 NGRLTNVELSER-VALSPSPCLRRLKQLEDA 51 (162)
T ss_dssp CTTCCHHHHHHH-HTSCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 456899999995 999999999999999764
No 347
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=27.19 E-value=27 Score=26.19 Aligned_cols=29 Identities=21% Similarity=0.498 Sum_probs=20.9
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCccccccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAY 36 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~e~ 36 (278)
..|..|+.. |..-.-.--|..||.|+=..
T Consensus 20 ~~C~~C~~~----Fs~~~RkHHCR~CG~ifC~~ 48 (120)
T 1y02_A 20 PSCKSCGAH----FANTARKQTCLDCKKNFCMT 48 (120)
T ss_dssp CCCTTTCCC----CSSGGGCEECTTTCCEECGG
T ss_pred CcccCcCCc----cccccccccCCCCCCeeCHH
Confidence 579999973 44456677888888887543
No 348
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=27.16 E-value=69 Score=22.54 Aligned_cols=31 Identities=3% Similarity=0.105 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhh
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEA 197 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~ 197 (278)
-|.++.||+.. ++++..++.+.++.|. ..|+
T Consensus 38 ~~~~~~ela~~-l~is~stvs~~L~~L~-~~Gl 68 (106)
T 1r1u_A 38 SEASVGHISHQ-LNLSQSNVSHQLKLLK-SVHL 68 (106)
T ss_dssp CCBCHHHHHHH-HTCCHHHHHHHHHHHH-HTTS
T ss_pred CCCCHHHHHHH-HCcCHHHHHHHHHHHH-HCCC
Confidence 46899999995 8999999999999997 4443
No 349
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=27.04 E-value=1.7e+02 Score=20.96 Aligned_cols=43 Identities=19% Similarity=0.202 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Q 023713 148 QEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLE 196 (278)
Q Consensus 148 ~~~~aAAclY~acR~~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~ 196 (278)
...+-+|-+|++ ...|..|||.. +|++...+++..++..+.+.
T Consensus 21 ~~~~~~A~lyYv-----~g~tQ~eIA~~-lGiSR~~VsrlL~~Ar~~~~ 63 (101)
T 2w7n_A 21 QQTIEIARGVLV-----DGKPQATFATS-LGLTRGAVSQAVHRVWAAFE 63 (101)
T ss_dssp HHHHHHHHHHHT-----TCCCHHHHHHH-HTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----cCCCHHHHHHH-HCCCHHHHHHHHHHHHHHHh
Confidence 344555555544 55789999995 99999999999999887764
No 350
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=27.03 E-value=98 Score=22.47 Aligned_cols=30 Identities=13% Similarity=0.149 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 164 ~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
+-|.+..||++. ++++..++.+.++.|.+.
T Consensus 48 ~~~~~~~ela~~-l~~s~~tvs~~l~~Le~~ 77 (146)
T 2gxg_A 48 DGPKTMAYLANR-YFVTQSAITASVDKLEEM 77 (146)
T ss_dssp TSCBCHHHHHHH-TTCCHHHHHHHHHHHHHT
T ss_pred cCCcCHHHHHHH-hCCCchhHHHHHHHHHHC
Confidence 567999999995 999999999999999874
No 351
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=26.84 E-value=91 Score=27.17 Aligned_cols=45 Identities=13% Similarity=0.273 Sum_probs=33.0
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhhc-----C-CCCChhHHHHHHHHHHHHHH
Q 023713 215 RRFCSNLGMTNQAVKAAQEAVQKSEDL-----D-IRLILVFFSLFLVETHIQLI 262 (278)
Q Consensus 215 ~r~~~~L~l~~~v~~~A~~i~~~~~~~-----~-~Gr~P~~iaaA~v~~~~~~~ 262 (278)
..+|..|++++.+...|+++.+.+... . .|..-.-+.|+ | |+++.
T Consensus 7 ~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~w~ac-L--Y~a~~ 57 (304)
T 2qdj_A 7 TALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGIC-I--FIAAV 57 (304)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHC----------CHHHHHHHH-H--HHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccchHHHHHHh-H--HHHhh
Confidence 567999999999999999999999884 2 24444445555 9 98873
No 352
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=26.56 E-value=70 Score=24.05 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 166 p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
|.++.||++. ++++..++.+.++.|.+.
T Consensus 67 ~~t~~eLa~~-l~~~~~~vs~~l~~Le~~ 94 (161)
T 3e6m_A 67 ELTVGQLATL-GVMEQSTTSRTVDQLVDE 94 (161)
T ss_dssp EEEHHHHHHH-TTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 8999999995 999999999999999763
No 353
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=26.52 E-value=32 Score=33.00 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=23.9
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCC---Cccccccccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSE---CGLVLEAYSV 38 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~---CG~Vl~e~~i 38 (278)
..||.||+ .++....+-...|++ |-.-+-++++
T Consensus 406 ~~CP~Cgs--~~~~~~~~~~~rC~n~~~Cpaq~~~~l~ 441 (586)
T 4glx_A 406 THCPVCGS--DVERVEGEAVARCTGGLICGAQRKESLK 441 (586)
T ss_dssp SBCTTTCC--BEECCTTCSCCEESCGGGCHHHHHHHHH
T ss_pred CcCCCCCC--chhhhhcccccEeCCCcCcHHHHHhHHH
Confidence 67999998 366656666788985 8776666653
No 354
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=26.46 E-value=99 Score=22.22 Aligned_cols=29 Identities=17% Similarity=0.011 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
-|.+..|+++. ++++..++.+.++.|.+.
T Consensus 47 ~~~~~~~la~~-l~~~~~tvs~~l~~L~~~ 75 (138)
T 1jgs_A 47 ACITPVELKKV-LSVDLGALTRMLDRLVCK 75 (138)
T ss_dssp SSBCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHH-HCCChHHHHHHHHHHHHC
Confidence 36899999995 999999999999999764
No 355
>4cpa_I Metallocarboxypeptidase inhibitor; hydrolase (C-terminal peptidase); 2.50A {Solanum tuberosum} SCOP: g.3.2.1 PDB: 1h20_A
Probab=26.41 E-value=16 Score=21.07 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=17.0
Q ss_pred CCCCCCCCCceeEeCCCCceEcCCC
Q 023713 5 YCADCKRLTEVVFDHSAGDTICSEC 29 (278)
Q Consensus 5 ~Cp~Cg~~~~vv~D~~~G~~vC~~C 29 (278)
.=|.|+.+ --..|...|-..|+.|
T Consensus 4 yD~~C~KP-C~T~DDCS~gw~CqaC 27 (38)
T 4cpa_I 4 ADPICNKP-CKTHDDCSGAWFCQAC 27 (38)
T ss_dssp SCTTTTCB-CSSSSSSCCCSSCCEE
T ss_pred cccccCCC-ccCccccccchHHHHH
Confidence 33678873 3346778899999887
No 356
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=26.38 E-value=17 Score=31.72 Aligned_cols=42 Identities=17% Similarity=0.461 Sum_probs=27.0
Q ss_pred CCCCCCCCCCceeEeCC--CCceEcCCCccccc-------ccccccccchhhccC
Q 023713 4 SYCADCKRLTEVVFDHS--AGDTICSECGLVLE-------AYSVDETSEWRIFAN 49 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~--~G~~vC~~CG~Vl~-------e~~id~~~ewr~f~~ 49 (278)
.+||.|+.. ++..+ .-..||..||.=.. +.++|.|+ |..|..
T Consensus 25 ~kc~~~~~~---~~~~~l~~~~~v~~~~~~~~r~~arerI~~L~D~gs-F~E~~~ 75 (304)
T 2f9y_B 25 TKCDSCGQV---LYRAELERNLEVCPKCDHHMRMTARNRLHSLLDEGS-LVELGS 75 (304)
T ss_dssp ECCTTTCCC---EETTHHHHTTTBCTTTCCBCCCCHHHHHHHHSCSSC-CEECSC
T ss_pred Hhhhhccch---hhHHHHHHHhCCCCCCCCCCCCCHHHHHHHHCCCCc-EEEECC
Confidence 579999973 55543 56799999996542 23456553 555543
No 357
>1nha_A TFIIF-alpha, transcription initiation factor IIF, alpha subunit; transcription factor, human general transcription factor TFIIF, RAP74; NMR {Homo sapiens} SCOP: a.4.5.30 PDB: 1onv_A
Probab=26.36 E-value=1.6e+02 Score=20.32 Aligned_cols=49 Identities=16% Similarity=0.301 Sum_probs=35.0
Q ss_pred cCCCHHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhc-CCC-HHHHHHHHHHHHHhhh
Q 023713 177 NGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNL-GMT-NQAVKAAQEAVQKSED 240 (278)
Q Consensus 177 ~~v~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L-~l~-~~v~~~A~~i~~~~~~ 240 (278)
.+|.+.+|++.++. .|....+++.+|=.++ +++ ++.++.-..|++++..
T Consensus 17 ~~iTEe~VRryL~r---------------kPmTT~dLl~KFK~r~~~~~~~e~v~~~a~ILKki~p 67 (82)
T 1nha_A 17 VQVTEDAVRRYLTR---------------KPMTTKDLLKKFQTKKTGLSSEQTVNVLAQILKRLNP 67 (82)
T ss_dssp CCCCHHHHHHHHHH---------------SCBCHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHh---------------CCccHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCH
Confidence 67888888776542 3556899999999887 555 5566666677776654
No 358
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=26.25 E-value=50 Score=23.70 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=17.9
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHH
Q 023713 167 RTVKEFCSVANGTTKKEIGRAKE 189 (278)
Q Consensus 167 ~tl~eia~~~~~v~~~~i~~~~~ 189 (278)
.+.+.+|+ ..||+..+|.|.-.
T Consensus 24 ~gq~~vA~-~iGV~~StISR~k~ 45 (97)
T 1xwr_A 24 LGTEKTAE-AVGVDKSQISRWKR 45 (97)
T ss_dssp HCHHHHHH-HHTCCTTTHHHHHH
T ss_pred HhHHHHHH-HhCCCHHHHHHHHh
Confidence 56889999 58999999998533
No 359
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=26.13 E-value=18 Score=22.61 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=15.5
Q ss_pred ceeEeCCCCceEcCCCcccccc
Q 023713 14 EVVFDHSAGDTICSECGLVLEA 35 (278)
Q Consensus 14 ~vv~D~~~G~~vC~~CG~Vl~e 35 (278)
+.-.|...+..+|..||..+..
T Consensus 9 ~~~~~~~~~~~~C~~CG~~i~~ 30 (49)
T 2l8e_A 9 SAELDKKANLLKCEYCGKYAPA 30 (49)
T ss_dssp TGGGGGGCSEEECTTTCCEEEG
T ss_pred cccccccCCCCcChhccCcccc
Confidence 3345556677789999998753
No 360
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=26.07 E-value=20 Score=26.06 Aligned_cols=8 Identities=38% Similarity=0.929 Sum_probs=6.5
Q ss_pred CCCCCCCC
Q 023713 4 SYCADCKR 11 (278)
Q Consensus 4 ~~Cp~Cg~ 11 (278)
..||.||+
T Consensus 48 ~~CPvCgs 55 (112)
T 1l8d_A 48 GKCPVCGR 55 (112)
T ss_dssp EECTTTCC
T ss_pred CCCCCCCC
Confidence 46999997
No 361
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=25.92 E-value=1.3e+02 Score=21.02 Aligned_cols=30 Identities=10% Similarity=0.087 Sum_probs=26.0
Q ss_pred CCCCCHHHHHHHHc-CCCHHHHHHHHHHHHHH
Q 023713 164 NKPRTVKEFCSVAN-GTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 164 ~~p~tl~eia~~~~-~v~~~~i~~~~~~l~~~ 194 (278)
.-|.++.||++. + +++..++.+..+.|.+.
T Consensus 25 ~~~~~~~eLa~~-l~~is~~tls~~L~~Le~~ 55 (107)
T 2hzt_A 25 HGKKRTSELKRL-MPNITQKMLTQQLRELEAD 55 (107)
T ss_dssp TCCBCHHHHHHH-CTTSCHHHHHHHHHHHHHT
T ss_pred hCCCCHHHHHHH-hcCCCHHHHHHHHHHHHHC
Confidence 357999999995 8 99999999999999753
No 362
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=25.89 E-value=15 Score=31.01 Aligned_cols=34 Identities=24% Similarity=0.467 Sum_probs=23.0
Q ss_pred CCCCCCCCCCceeEeC----CCC-ceEcCCCcccccccccccc
Q 023713 4 SYCADCKRLTEVVFDH----SAG-DTICSECGLVLEAYSVDET 41 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~----~~G-~~vC~~CG~Vl~e~~id~~ 41 (278)
..|..|+.. ++. ..+ ...|..||-++..+++..|
T Consensus 122 ~~C~~C~~~----~~~~~~~~~~~~p~C~~Cgg~lrP~Vv~Fg 160 (249)
T 1m2k_A 122 VRCTSCNNS----FEVESAPKIPPLPKCDKCGSLLRPGVVWAG 160 (249)
T ss_dssp EEESSSSCE----EECSSCCCSSSCCBCSSSSSBEEEEECCTT
T ss_pred eEeCCCCCc----ccchhhccCCCCCCCCCCCCCcCCeEEecC
Confidence 469999862 232 223 3689999999988876544
No 363
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=25.87 E-value=89 Score=24.42 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=26.6
Q ss_pred cCCCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Q 023713 163 ENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193 (278)
Q Consensus 163 ~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~ 193 (278)
.+-|.|+.+||.. ++++..++.+.++.|.+
T Consensus 54 ~~~~~t~~eLa~~-l~is~~tvs~~l~~Le~ 83 (189)
T 3nqo_A 54 PEEETTLNNIARK-MGTSKQNINRLVANLEK 83 (189)
T ss_dssp CGGGCCHHHHHHH-HTSCHHHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHH-HCCCHHHHHHHHHHHHH
Confidence 3568999999995 99999999999999976
No 364
>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}
Probab=25.78 E-value=27 Score=21.22 Aligned_cols=16 Identities=25% Similarity=0.692 Sum_probs=12.1
Q ss_pred eCCCCceEcCCCcccc
Q 023713 18 DHSAGDTICSECGLVL 33 (278)
Q Consensus 18 D~~~G~~vC~~CG~Vl 33 (278)
|...+..+|..||.|=
T Consensus 1 ~~~~~~~~CE~CG~~g 16 (43)
T 2w0t_A 1 GSGSEPAVCEMCGIVG 16 (43)
T ss_dssp CCSCCEEECTTTCCEE
T ss_pred CCCCceehhhhhcCcc
Confidence 3456678999999874
No 365
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=25.73 E-value=66 Score=23.15 Aligned_cols=29 Identities=3% Similarity=0.131 Sum_probs=24.7
Q ss_pred CCC-CHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 165 KPR-TVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 165 ~p~-tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
.+. +..++|.. ++|+..+++++++.|...
T Consensus 31 ~~lPs~~~La~~-~~vSr~tvr~al~~L~~~ 60 (113)
T 3tqn_A 31 EMIPSIRKISTE-YQINPLTVSKAYQSLLDD 60 (113)
T ss_dssp CEECCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CcCcCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 334 89999995 999999999999999763
No 366
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=25.72 E-value=51 Score=20.00 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=18.7
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHH
Q 023713 167 RTVKEFCSVANGTTKKEIGRAKE 189 (278)
Q Consensus 167 ~tl~eia~~~~~v~~~~i~~~~~ 189 (278)
.|..|||.. ++++..++.+.++
T Consensus 32 ~s~~eIA~~-lgis~~TV~~~l~ 53 (55)
T 2x48_A 32 YTVQQIANA-LGVSERKVRRYLE 53 (55)
T ss_dssp CCHHHHHHH-HTSCHHHHHHHHT
T ss_pred CCHHHHHHH-HCcCHHHHHHHHH
Confidence 589999995 9999999987653
No 367
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=25.54 E-value=18 Score=31.66 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=23.0
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCccccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~ 34 (278)
..|-+||+...--....-|..+|.+|.-|-.
T Consensus 38 ~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr 68 (329)
T 3o47_A 38 NVCFECGAFNPQWVSVTYGIWICLECSGRHR 68 (329)
T ss_dssp TBCTTTCCBSCCEEEGGGTEEECHHHHHHHH
T ss_pred CcCCCCCCCCCCeEEecCCEEEChhhhhhhc
Confidence 5799999843333455789999999988764
No 368
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=25.51 E-value=72 Score=22.69 Aligned_cols=29 Identities=14% Similarity=0.055 Sum_probs=25.0
Q ss_pred CCC-CHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 165 KPR-TVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 165 ~p~-tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
... +..|+|+. ++++..+++++++.|.+.
T Consensus 41 ~~lps~~eLa~~-lgVSr~tVr~al~~L~~~ 70 (102)
T 2b0l_A 41 EGLLVASKIADR-VGITRSVIVNALRKLESA 70 (102)
T ss_dssp EEEECHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CcCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 344 89999995 999999999999999864
No 369
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=25.49 E-value=61 Score=27.24 Aligned_cols=33 Identities=12% Similarity=0.237 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhh
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~ 198 (278)
...|.+|||.. +++++.++....+.+.+.|+..
T Consensus 211 ~G~s~~eIA~~-l~is~~TV~~~~~~~~~kl~~~ 243 (265)
T 3qp6_A 211 RGKTNWEIATI-LNISERTVKFHVANVIRKLNAN 243 (265)
T ss_dssp TTCCHHHHHHH-HTSCHHHHHHHHHHHHHHTTCS
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHHHHHHHhCCC
Confidence 36789999995 9999999999999999999864
No 370
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=25.47 E-value=1.2e+02 Score=20.99 Aligned_cols=46 Identities=11% Similarity=0.096 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQ 226 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 226 (278)
...|+.++|.. +|++..+|.+..+ |.. ..+.+.+.+++..|+++.+
T Consensus 40 ~gltq~elA~~-~gis~~~is~iE~------G~~---------~ps~~~l~~ia~~l~v~~~ 85 (99)
T 3g5g_A 40 KGMTQEDLAYK-SNLDRTYISGIER------NSR---------NLTIKSLELIMKGLEVSDV 85 (99)
T ss_dssp TTCCHHHHHHH-HTCCHHHHHHHHT------TCS---------CCBHHHHHHHHHHTTCCHH
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHC------CCC---------CCCHHHHHHHHHHHCcCHH
Confidence 35689999994 8999988877633 211 1245788999999999865
No 371
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=25.47 E-value=70 Score=24.09 Aligned_cols=28 Identities=0% Similarity=-0.045 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 166 p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
|.++.||+.. ++++..++.+.++.|.+.
T Consensus 60 ~~t~~eLa~~-l~~~~~tvs~~l~~Le~~ 87 (162)
T 3k0l_A 60 NLSNAKLAER-SFIKPQSANKILQDLLAN 87 (162)
T ss_dssp TCCHHHHHHH-HTSCGGGHHHHHHHHHHT
T ss_pred CCCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 7999999995 999999999999999763
No 372
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=25.46 E-value=73 Score=23.93 Aligned_cols=30 Identities=10% Similarity=0.145 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 164 ~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
+-+.+..|+|+. +|++..++.+.++.|.+.
T Consensus 19 ~~~~s~~ela~~-lg~s~~tv~~~l~~L~~~ 48 (150)
T 2w25_A 19 DGRATLSELATR-AGLSVSAVQSRVRRLESR 48 (150)
T ss_dssp CTTCCHHHHHHH-HTSCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 457999999995 999999999999999763
No 373
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=25.37 E-value=73 Score=23.55 Aligned_cols=28 Identities=7% Similarity=0.037 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 166 p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
|.++.||++. ++++..++.+.++.|.+.
T Consensus 51 ~~t~~ela~~-l~~s~~tvs~~l~~Le~~ 78 (155)
T 1s3j_A 51 SLKVSEIAER-MEVKPSAVTLMADRLEQK 78 (155)
T ss_dssp EEEHHHHHHH-HTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 7899999995 999999999999999764
No 374
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=25.27 E-value=23 Score=21.63 Aligned_cols=15 Identities=53% Similarity=0.955 Sum_probs=12.5
Q ss_pred eCCCCceEcC--CCccc
Q 023713 18 DHSAGDTICS--ECGLV 32 (278)
Q Consensus 18 D~~~G~~vC~--~CG~V 32 (278)
+...|+.+|. .||.+
T Consensus 9 ~~~~GDW~C~~~~C~~~ 25 (45)
T 1n0z_A 9 RVSDGDWICPDKKCGNV 25 (45)
T ss_dssp SSCSSSCBCSSTTTCCB
T ss_pred CCCCCCcCCCCCCCCCE
Confidence 4578999999 79987
No 375
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=25.27 E-value=1.1e+02 Score=21.32 Aligned_cols=29 Identities=14% Similarity=0.039 Sum_probs=25.4
Q ss_pred CCCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Q 023713 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193 (278)
Q Consensus 164 ~~p~tl~eia~~~~~v~~~~i~~~~~~l~~ 193 (278)
+-.++.+||+.. ++++..++.+.++.|.+
T Consensus 34 ~~gi~qkeLa~~-~~l~~~tvt~iLk~LE~ 62 (91)
T 2dk5_A 34 NKGIWSRDVRYK-SNLPLTEINKILKNLES 62 (91)
T ss_dssp TTCEEHHHHHHH-TTCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHH-HCCCHHHHHHHHHHHHH
Confidence 346899999995 99999999999999965
No 376
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=25.26 E-value=35 Score=21.54 Aligned_cols=21 Identities=33% Similarity=0.838 Sum_probs=13.2
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECG 30 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG 30 (278)
..||.|+....++ ...|..|+
T Consensus 10 ~~C~~C~GsG~~~------~~~C~~C~ 30 (53)
T 2bx9_A 10 VACPKCERAGEIE------GTPCPACS 30 (53)
T ss_dssp EECTTTTTSSEET------TEECTTTT
T ss_pred ccCCCCcceeccC------CCCCccCC
Confidence 4699998744332 25677774
No 377
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=25.18 E-value=33 Score=33.69 Aligned_cols=24 Identities=33% Similarity=0.721 Sum_probs=14.4
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCccccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~ 34 (278)
..||.||.+ ...|+ .|..||.+++
T Consensus 141 gtcP~c~~~------~~~Gd-~c~~~G~~l~ 164 (722)
T 1rqg_A 141 GTCPYCGAE------DQKGD-QCEVCGRPLT 164 (722)
T ss_dssp SBCSSSCCS------CCCTT-TCSSSCCCCC
T ss_pred cccCccCCc------cCCcc-hhhhcccccC
Confidence 358888862 23454 3667777664
No 378
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=25.13 E-value=41 Score=27.63 Aligned_cols=29 Identities=24% Similarity=0.636 Sum_probs=21.4
Q ss_pred CCCCCCCCCCCceeEeCCCCceEcCCCcccccc
Q 023713 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEA 35 (278)
Q Consensus 3 ~~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~e 35 (278)
...|+.|+.. |..-.-.--|..||.|+=.
T Consensus 161 ~~~C~~C~~~----F~~~~rrhhCr~CG~v~C~ 189 (220)
T 1dvp_A 161 GRVCHRCRVE----FTFTNRKHHCRNCGQVFCG 189 (220)
T ss_dssp CSBCTTTCCB----CCSSSCCEECTTTCCEECS
T ss_pred CCccCCCCCc----cCCcccccccCCcCCEECh
Confidence 3579999873 4455677889999998853
No 379
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=25.10 E-value=21 Score=28.00 Aligned_cols=13 Identities=38% Similarity=1.073 Sum_probs=11.1
Q ss_pred CceEcCCCccccc
Q 023713 22 GDTICSECGLVLE 34 (278)
Q Consensus 22 G~~vC~~CG~Vl~ 34 (278)
..++|..||.|.+
T Consensus 106 ~HliC~~CG~v~e 118 (162)
T 4ets_A 106 DHMICKNCGKIIE 118 (162)
T ss_dssp EEEEETTTCCEEE
T ss_pred cEEEECCCCCEEE
Confidence 3599999999985
No 380
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.09 E-value=30 Score=24.76 Aligned_cols=9 Identities=22% Similarity=0.490 Sum_probs=6.0
Q ss_pred CCCCCCCCC
Q 023713 4 SYCADCKRL 12 (278)
Q Consensus 4 ~~Cp~Cg~~ 12 (278)
..||.|+..
T Consensus 46 ~~C~~C~G~ 54 (104)
T 2ctt_A 46 QHCHYCGGS 54 (104)
T ss_dssp EECSSSSSS
T ss_pred ccCCCCCCC
Confidence 467888663
No 381
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=25.06 E-value=1.3e+02 Score=23.34 Aligned_cols=41 Identities=10% Similarity=0.239 Sum_probs=32.0
Q ss_pred cHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHH
Q 023713 147 NQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKE 189 (278)
Q Consensus 147 ~~~~~aAAclY~acR~~~~p~tl~eia~~~~~v~~~~i~~~~~ 189 (278)
+.+.+..|++=+..+.- ...|+.+|+.. .|+++.+|-+.|.
T Consensus 21 ~r~~Il~aA~~lf~~~G-~~~s~~~IA~~-aGvs~~tlY~~F~ 61 (215)
T 2hku_A 21 TRDALFTAATELFLEHG-EGVPITQICAA-AGAHPNQVTYYYG 61 (215)
T ss_dssp HHHHHHHHHHHHHHHHC-TTSCHHHHHHH-HTCCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhC-CCcCHHHHHHH-hCCCHHHHHHHcC
Confidence 45667777777777777 88999999995 8999888877654
No 382
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=25.03 E-value=82 Score=21.81 Aligned_cols=28 Identities=11% Similarity=0.084 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVK 193 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~ 193 (278)
-|.+..||++. ++++..++.+..+.|.+
T Consensus 35 ~~~~~~ela~~-l~is~~tvs~~L~~L~~ 62 (102)
T 3pqk_A 35 GEFSVGELEQQ-IGIGQPTLSQQLGVLRE 62 (102)
T ss_dssp CCBCHHHHHHH-HTCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 47999999995 89999999999999965
No 383
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=24.94 E-value=1.7e+02 Score=20.19 Aligned_cols=68 Identities=13% Similarity=0.037 Sum_probs=39.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCcHHH-HHHHHHHHHHHhc-CCC--CCHHHHHHHHcCC-CHHHHHHH
Q 023713 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEA-IVAACLYIACRQE-NKP--RTVKEFCSVANGT-TKKEIGRA 187 (278)
Q Consensus 113 I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~gr~~~~-~aAAclY~acR~~-~~p--~tl~eia~~~~~v-~~~~i~~~ 187 (278)
+.++|+.++++.....+ +|++... .++.. +--.=+-.|+++- ..+ .++.|||.. .|. +...+.+.
T Consensus 21 ~~~lA~~~~~s~~~l~r---~fk~~~G------~s~~~~~~~~Rl~~A~~lL~~~~~~~si~~IA~~-~Gf~~~s~F~r~ 90 (108)
T 3mn2_A 21 IEKLTALTGISSRGIFK---AFQRSRG------YSPMAFAKRVRLQHAHNLLSDGATPTTVTAAALS-CGFSNLGHFARD 90 (108)
T ss_dssp HHHHHHHHTCCHHHHHH---HHHHHTS------SCHHHHHHHHHHHHHHHHHHSSSSCCCHHHHHHH-TTCCCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHH---HHHHHhC------cCHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH-hCCCCHHHHHHH
Confidence 67888889998654443 6666543 33322 2222222233322 222 699999984 776 56777777
Q ss_pred HHH
Q 023713 188 KEF 190 (278)
Q Consensus 188 ~~~ 190 (278)
|++
T Consensus 91 Fk~ 93 (108)
T 3mn2_A 91 YRD 93 (108)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 384
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=24.72 E-value=1e+02 Score=20.54 Aligned_cols=58 Identities=10% Similarity=-0.078 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 023713 186 RAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDIRLILVFFSLFLV 255 (278)
Q Consensus 186 ~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~Gr~P~~iaaA~v 255 (278)
..+..+.+.+|-. +...-.+.|....+..+++++++..|.+.+- . .|+.+..-.-.++
T Consensus 5 ~l~~~~e~~~gr~-------ls~~e~~~i~~w~~~~~~~~elI~~A~~~a~--~---~~~~s~~Yi~~Il 62 (78)
T 2zc2_A 5 ALVEDFERELGRM-------LSPFELEDLQKTVSDDKTDPDLVRSALREAV--F---NGKTNWNYIQAIL 62 (78)
T ss_dssp HHHHHHHHHHTSC-------CCHHHHHHHHHHHTTTCCCHHHHHHHHHHHH--H---HTCCCHHHHHHHH
T ss_pred HHHHHHHHHhCCC-------CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH--H---cCCCCHHHHHHHH
Confidence 3455555566531 1112345788899999999999998887763 1 2455544444444
No 385
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=24.63 E-value=1e+02 Score=22.70 Aligned_cols=29 Identities=10% Similarity=-0.027 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
-+.+..||++. ++++..++.+.++.|.+.
T Consensus 60 ~~~t~~ela~~-l~~s~~tvs~~l~~Le~~ 88 (153)
T 2pex_A 60 DERSVSEIGER-LYLDSATLTPLLKRLQAA 88 (153)
T ss_dssp CSEEHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHH-hCCCcccHHHHHHHHHHC
Confidence 47899999995 899999999999999864
No 386
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=24.33 E-value=21 Score=24.10 Aligned_cols=13 Identities=31% Similarity=0.629 Sum_probs=10.6
Q ss_pred eEcCCCccccccc
Q 023713 24 TICSECGLVLEAY 36 (278)
Q Consensus 24 ~vC~~CG~Vl~e~ 36 (278)
+.|..||.|+.+.
T Consensus 5 VRCFTCGkvi~~~ 17 (70)
T 1twf_J 5 VRCFSCGKVVGDK 17 (70)
T ss_dssp SBCTTTCCBCTTC
T ss_pred eecCCCCCChHHH
Confidence 5799999999743
No 387
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=24.29 E-value=1.3e+02 Score=21.47 Aligned_cols=29 Identities=14% Similarity=0.077 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
-|.+..||++. ++++..++.+.++.|.+.
T Consensus 42 ~~~~~~ela~~-l~~s~~tvs~~l~~L~~~ 70 (138)
T 3bpv_A 42 PGIKQDELATF-FHVDKGTIARTLRRLEES 70 (138)
T ss_dssp TTCBHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 57899999995 999999999999999874
No 388
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A {Pyrobaculum spherical virus}
Probab=24.12 E-value=27 Score=24.98 Aligned_cols=9 Identities=22% Similarity=0.648 Sum_probs=6.8
Q ss_pred CCCCCCCCC
Q 023713 4 SYCADCKRL 12 (278)
Q Consensus 4 ~~Cp~Cg~~ 12 (278)
-.||.||.+
T Consensus 53 akcprcgae 61 (131)
T 2x5c_A 53 AKCPRCGAE 61 (131)
T ss_dssp EECTTTSCE
T ss_pred ccCCCCCCc
Confidence 369999874
No 389
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=23.98 E-value=2e+02 Score=20.44 Aligned_cols=65 Identities=8% Similarity=0.146 Sum_probs=49.3
Q ss_pred chhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCH
Q 023713 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181 (278)
Q Consensus 102 ~er~l~~~~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~gr~~~~~aAAclY~acR~~~~p~tl~eia~~~~~v~~ 181 (278)
.+..+.++...++++.+--.+|.++...|.+.-..+.+.+ .++..-||.++++ |.||+. .-+++.
T Consensus 12 ~e~~ik~~~~~L~~I~~D~sVPRNIRraA~ea~~~L~~e~----~~~~vRAAtAIs~----------LDeISn-DPNmP~ 76 (94)
T 2qzg_A 12 PADKLKNISSMLEEIVEDTTVPRNIRAAADNAKNALHNEE----QELIVRSATAIQY----------LDDISE-DPNMPI 76 (94)
T ss_dssp HHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTCTT----SCHHHHHHHHHHH----------HHHHTT-CTTCCH
T ss_pred hHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHhCCC----cchhHHHHHHHHH----------HHHhhc-CCCCCh
Confidence 4567888888999999999999999999998888776543 4566777777775 566655 355554
No 390
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=23.94 E-value=1.5e+02 Score=20.95 Aligned_cols=48 Identities=10% Similarity=0.068 Sum_probs=34.4
Q ss_pred cCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHH
Q 023713 163 ENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQ 226 (278)
Q Consensus 163 ~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 226 (278)
.....|..|+|.. +|++..+|.+..+ |. . . -+.+.+.+++..|+.+.+
T Consensus 24 ~~~gltq~eLA~~-lGis~~~is~ie~------G~-------~-~-~s~~~~~kla~~lgvs~~ 71 (104)
T 3trb_A 24 FLDKMSANQLAKH-LAIPTNRVTAILN------GA-------R-S-ITADTALRLAKFFGTTPE 71 (104)
T ss_dssp HTTSCCHHHHHHH-HTSCHHHHHHHHT------TS-------S-C-CCHHHHHHHHHHHTCCHH
T ss_pred HHcCCCHHHHHHH-HCcCHHHHHHHHc------CC-------C-C-CCHHHHHHHHHHHCcCHH
Confidence 3456899999994 8999998877632 11 1 1 134778889999998865
No 391
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=23.88 E-value=72 Score=23.67 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=24.1
Q ss_pred CCC-CHHHHHHHHcCCCHHHHHHHHHHHHH
Q 023713 165 KPR-TVKEFCSVANGTTKKEIGRAKEFIVK 193 (278)
Q Consensus 165 ~p~-tl~eia~~~~~v~~~~i~~~~~~l~~ 193 (278)
..+ +.+++|.. ++|+..+++++++.|..
T Consensus 36 ~~LPser~La~~-~gVSr~tVReAl~~L~~ 64 (134)
T 4ham_A 36 EKILSIREFASR-IGVNPNTVSKAYQELER 64 (134)
T ss_dssp CEECCHHHHHHH-HTCCHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHH-HCCCHHHHHHHHHHHHH
Confidence 444 78899995 99999999999999976
No 392
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=23.83 E-value=79 Score=24.66 Aligned_cols=29 Identities=10% Similarity=0.197 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
-+.+..|||+. +|++..++.+.+++|.+.
T Consensus 40 ~~~s~~eLA~~-lglS~~tv~~rl~~L~~~ 68 (171)
T 2e1c_A 40 GKAPLREISKI-TGLAESTIHERIRKLRES 68 (171)
T ss_dssp TTCCHHHHHHH-HTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 46899999995 999999999999999764
No 393
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=23.75 E-value=99 Score=20.69 Aligned_cols=32 Identities=9% Similarity=0.244 Sum_probs=20.8
Q ss_pred CHHHHHHHHHhhcCCC-----------HHHHHHHHHHHHHhhh
Q 023713 209 HASDYLRRFCSNLGMT-----------NQAVKAAQEAVQKSED 240 (278)
Q Consensus 209 ~p~~~i~r~~~~L~l~-----------~~v~~~A~~i~~~~~~ 240 (278)
-|.+-|.+++..+|++ ++++....+|++.+.+
T Consensus 7 lp~~~v~~iaes~Gi~~lsddaa~~LA~dvEyr~~eI~qeA~k 49 (70)
T 1taf_B 7 ISAESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAK 49 (70)
T ss_dssp CCHHHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888874 3455555556665554
No 394
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=23.73 E-value=1.3e+02 Score=19.76 Aligned_cols=44 Identities=11% Similarity=0.151 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCC
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMT 224 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~ 224 (278)
...|..++|.. +|++..+|.+..+ |.. . ...+.+.+++..|+++
T Consensus 24 ~glsq~~lA~~-~gis~~~i~~~e~------g~~------~---~~~~~l~~i~~~l~~~ 67 (88)
T 2wiu_B 24 NGWTQSELAKK-IGIKQATISNFEN------NPD------N---TTLTTFFKILQSLELS 67 (88)
T ss_dssp TTCCHHHHHHH-HTCCHHHHHHHHH------CGG------G---CBHHHHHHHHHHTTCE
T ss_pred cCCCHHHHHHH-hCCCHHHHHHHHc------CCC------C---CCHHHHHHHHHHhCCC
Confidence 35789999995 8999998877654 211 1 1346788888888876
No 395
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=23.61 E-value=1.4e+02 Score=22.35 Aligned_cols=31 Identities=6% Similarity=0.105 Sum_probs=26.4
Q ss_pred hcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Q 023713 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193 (278)
Q Consensus 162 ~~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~ 193 (278)
..+-+.+..|||.. ++++..++.+.++.|.+
T Consensus 42 ~~~~~~~~~eLa~~-l~~~~~tvs~~v~~Le~ 72 (151)
T 4aik_A 42 RLPPEQSQIQLAKA-IGIEQPSLVRTLDQLEE 72 (151)
T ss_dssp HSCTTSCHHHHHHH-HTSCHHHHHHHHHHHHH
T ss_pred HcCCCCcHHHHHHH-HCcCHHHHHHHHHHHHh
Confidence 34556788999995 99999999999999976
No 396
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=23.53 E-value=99 Score=21.06 Aligned_cols=31 Identities=16% Similarity=0.006 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhh
Q 023713 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEA 197 (278)
Q Consensus 166 p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~ 197 (278)
..|..+||.. +|+++.++++..-.|.+.=.+
T Consensus 29 ~~Ta~~IAkk-Lg~sK~~vNr~LY~L~kkG~V 59 (75)
T 1sfu_A 29 YTTAISLSNR-LKINKKKINQQLYKLQKEDTV 59 (75)
T ss_dssp EECHHHHHHH-TTCCHHHHHHHHHHHHHTTSE
T ss_pred chHHHHHHHH-HCCCHHHHHHHHHHHHHCCCE
Confidence 3899999995 999999999998887765443
No 397
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=23.49 E-value=91 Score=22.71 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=27.6
Q ss_pred HHhcCCCCCHHHHHHHHc--CCCHHHHHHHHHHHHHH
Q 023713 160 CRQENKPRTVKEFCSVAN--GTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 160 cR~~~~p~tl~eia~~~~--~v~~~~i~~~~~~l~~~ 194 (278)
.+.++ |.|..+||.. + +++...+++.++.|.+.
T Consensus 22 L~~~g-~~s~~eLA~~-l~~giS~~aVs~rL~~Le~~ 56 (111)
T 3b73_A 22 IHEEG-NGSPKELEDR-DEIRISKSSVSRRLKKLADH 56 (111)
T ss_dssp HHHHS-CBCHHHHHTS-TTCCSCHHHHHHHHHHHHHT
T ss_pred HHHcC-CCCHHHHHHH-HhcCCCHHHHHHHHHHHHHC
Confidence 34444 8999999994 8 99999999999999764
No 398
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=23.34 E-value=1.4e+02 Score=22.95 Aligned_cols=31 Identities=13% Similarity=0.165 Sum_probs=26.7
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhh
Q 023713 167 RTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198 (278)
Q Consensus 167 ~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~ 198 (278)
.+-++|+.. ++++..++....+.+.+.|+..
T Consensus 158 ~s~~~Ia~~-l~is~~TV~~~~~~i~~Kl~~~ 188 (208)
T 1yio_A 158 LMNKQIAGE-LGIAEVTVKVHRHNIMQKLNVR 188 (208)
T ss_dssp CCHHHHHHH-HTCCHHHHHHHHHHHHHHTTCS
T ss_pred CcHHHHHHH-cCCCHHHHHHHHHHHHHHhCCC
Confidence 578999995 8999999999999999988753
No 399
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=23.34 E-value=30 Score=29.18 Aligned_cols=34 Identities=29% Similarity=0.539 Sum_probs=22.7
Q ss_pred CCCCCCCCCCceeEeCC-------CC-ceEcCCCcc-cccccccccc
Q 023713 4 SYCADCKRLTEVVFDHS-------AG-DTICSECGL-VLEAYSVDET 41 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~-------~G-~~vC~~CG~-Vl~e~~id~~ 41 (278)
..|..|+.. +|.. .+ ...|..||- ++..+++-.|
T Consensus 124 ~~C~~C~~~----~~~~~~~~~~~~~~~p~C~~Cgg~~lrP~Vv~Fg 166 (253)
T 1ma3_A 124 LDCLDCHET----YDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFG 166 (253)
T ss_dssp EEETTTCCE----EEGGGTHHHHHTTCCCCCTTTCCSCEEEEECCBT
T ss_pred eeeCCCCCc----CcHHHHHHHhccCCCCCCCCCCCccccceEEEeC
Confidence 469999962 3321 22 357999999 8888776544
No 400
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=23.29 E-value=1.7e+02 Score=24.07 Aligned_cols=41 Identities=10% Similarity=0.160 Sum_probs=30.2
Q ss_pred cHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHH
Q 023713 147 NQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKE 189 (278)
Q Consensus 147 ~~~~~aAAclY~acR~~~~p~tl~eia~~~~~v~~~~i~~~~~ 189 (278)
....+..+.-|+-- .-..++++.++|+. +++++..+.+.++
T Consensus 167 ~~~~~~~~~~~i~~-~~~~~~sl~~lA~~-~~~S~~~l~r~fk 207 (276)
T 3gbg_A 167 DLDAMEKISCLVKS-DITRNWRWADICGE-LRTNRMILKKELE 207 (276)
T ss_dssp TTCHHHHHHHHHHH-TTTSCCCHHHHHHH-HTCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH-hhcCCCCHHHHHHH-HCcCHHHHHHHHH
Confidence 33455555666553 34458999999995 9999999999885
No 401
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=23.25 E-value=34 Score=23.57 Aligned_cols=10 Identities=20% Similarity=0.690 Sum_probs=5.7
Q ss_pred eEcCCCcccc
Q 023713 24 TICSECGLVL 33 (278)
Q Consensus 24 ~vC~~CG~Vl 33 (278)
+.|.+||...
T Consensus 38 I~CnDC~~~s 47 (79)
T 2k2d_A 38 ILCNDCNGRS 47 (79)
T ss_dssp EEESSSCCEE
T ss_pred EECCCCCCCc
Confidence 4566666554
No 402
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=23.23 E-value=21 Score=23.22 Aligned_cols=20 Identities=30% Similarity=0.748 Sum_probs=12.8
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCcc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGL 31 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~ 31 (278)
..|..|+- +...+ -|.+||.
T Consensus 2 rAC~~C~~----v~~~~----~CpnC~~ 21 (59)
T 3lpe_B 2 RACLKCKY----LTNDE----ICPICHS 21 (59)
T ss_dssp EEETTTCB----EESSS----BCTTTCC
T ss_pred cccccCCc----ccCCC----CCCCCCC
Confidence 45888885 23222 4999987
No 403
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=23.23 E-value=46 Score=32.48 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=23.2
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCC---Cccccccccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSE---CGLVLEAYSV 38 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~---CG~Vl~e~~i 38 (278)
..||.||+ .++....+-.+.|.+ |-.-+.++++
T Consensus 406 ~~CP~Cgs--~l~~~~~~~~~rC~n~~~Cpaq~~~~l~ 441 (671)
T 2owo_A 406 THCPVCGS--DVERVEGEAVARCTGGLICGAQRKESLK 441 (671)
T ss_dssp SBCTTTCC--BEEECTTCSCEEECCGGGCHHHHHHHHH
T ss_pred CCCCCCCC--EeEEecCCEEEECCCCCCCHHHHHHHHH
Confidence 67999998 366554556777994 8776666654
No 404
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=23.22 E-value=1.4e+02 Score=24.70 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhh
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~ 198 (278)
...|.+|||+. +++++.++......+.+.|+..
T Consensus 211 ~G~s~~EIA~~-L~iS~~TVk~~l~ra~~kL~~~ 243 (258)
T 3clo_A 211 KGLSSKEIAAT-LYISVNTVNRHRQNILEKLSVG 243 (258)
T ss_dssp TTCCHHHHHHH-HTCCHHHHHHHHHHHHHHTTCS
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHHHHHHHHcCC
Confidence 34689999995 9999999999999999888753
No 405
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=23.17 E-value=79 Score=25.60 Aligned_cols=31 Identities=10% Similarity=0.109 Sum_probs=27.5
Q ss_pred cCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 163 ENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 163 ~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
.+-+.+..|||+. ++++..++.+.+++|.+.
T Consensus 17 ~~~~~~~~~lA~~-l~vs~~tvs~~l~~Le~~ 47 (214)
T 3hrs_A 17 RHNKITNKEIAQL-MQVSPPAVTEMMKKLLAE 47 (214)
T ss_dssp SCSCCCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHH-HCCChhHHHHHHHHHHHC
Confidence 5678999999995 999999999999999863
No 406
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=23.16 E-value=86 Score=24.12 Aligned_cols=30 Identities=3% Similarity=-0.032 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Q 023713 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLE 196 (278)
Q Consensus 166 p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~ 196 (278)
..|.+|||.. +|++..++.+...+..+.|.
T Consensus 156 g~s~~EIA~~-lgis~~tV~~~l~ra~~~Lr 185 (194)
T 1or7_A 156 GLSYEEIAAI-MDCPVGTVRSRIFRAREAID 185 (194)
T ss_dssp CCCHHHHHHH-TTSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHH-HCCCHHHHHHHHHHHHHHHH
Confidence 4789999995 99999888877666665554
No 407
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=23.05 E-value=1.5e+02 Score=21.43 Aligned_cols=31 Identities=10% Similarity=0.169 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhh
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEA 197 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~ 197 (278)
-|.++.|+++. ++++..++.+.++.|.+ .|+
T Consensus 58 ~~~s~~ela~~-lgis~stvs~~L~~Le~-~Gl 88 (122)
T 1r1t_A 58 SELCVGDLAQA-IGVSESAVSHQLRSLRN-LRL 88 (122)
T ss_dssp CCBCHHHHHHH-HTCCHHHHHHHHHHHHH-TTS
T ss_pred CCCCHHHHHHH-HCcCHHHHHHHHHHHHH-CCC
Confidence 47899999995 89999999999999987 654
No 408
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=23.00 E-value=1.1e+02 Score=22.45 Aligned_cols=29 Identities=7% Similarity=-0.060 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
-|.|+.||++. ++++..++.+.++.|.+.
T Consensus 54 ~~~t~~eLa~~-l~~~~~tvs~~l~~Le~~ 82 (154)
T 2qww_A 54 PGISVADLTKR-LIITGSSAAANVDGLISL 82 (154)
T ss_dssp TTEEHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 46999999995 999999999999999763
No 409
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=22.99 E-value=1.1e+02 Score=25.41 Aligned_cols=78 Identities=10% Similarity=0.171 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHHHH--------HHhhhhc--------ccc-----cccCCCC
Q 023713 151 IVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV--------KHLEAEM--------GQS-----VEMGTIH 209 (278)
Q Consensus 151 ~aAAclY~acR~~~~p~tl~eia~~~~~v~~~~i~~~~~~l~--------~~L~~~~--------~~~-----~~~~~~~ 209 (278)
+..+.-|+--.. ..+.++.++|.. ++++...+.+.+++.. +.+.+.. +.+ ....-.+
T Consensus 5 ~~~~~~~i~~~~-~~~~~~~~la~~-~~~s~~~l~r~f~~~~g~s~~~~~~~~Rl~~a~~~L~~~~~~i~~ia~~~Gf~~ 82 (292)
T 1d5y_A 5 IRDLLIWLEGHL-DQPLSLDNVAAK-AGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDS 82 (292)
T ss_dssp HHHHHHHHHTTS-SSSCCCHHHHTT-TSSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCC-CCCCCHHHHHHH-HCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCCCC
Confidence 334444544332 568999999995 8999999998877542 1111100 000 1234567
Q ss_pred HHHHHHHHHhhcCCCHHHHHH
Q 023713 210 ASDYLRRFCSNLGMTNQAVKA 230 (278)
Q Consensus 210 p~~~i~r~~~~L~l~~~v~~~ 230 (278)
+..|..-|-...|+++...+.
T Consensus 83 ~~~f~r~fk~~~g~~P~~~r~ 103 (292)
T 1d5y_A 83 QQTFTRAFKKQFAQTPALYRR 103 (292)
T ss_dssp HHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHHHHHCcChHHHHH
Confidence 888888888888888766543
No 410
>4fxe_A Antitoxin RELB; toxin/antitoxin system, toxin, nuclease, translational contr response, RELB, ribosome, toxin-toxin inhibitor compl; 2.75A {Escherichia coli} PDB: 2k29_A 2kc8_B
Probab=22.97 E-value=1.8e+02 Score=19.73 Aligned_cols=44 Identities=16% Similarity=0.156 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhcCCCCCHHH
Q 023713 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171 (278)
Q Consensus 121 ~Lp~~v~e~A~~i~k~~~~~~~~~gr~~~~~aAAclY~acR~~~~p~tl~e 171 (278)
++++.+.++|..+|+.. |-++...+=..+--+.+..++|..+.-
T Consensus 7 RiD~~lK~~a~~v~~~l-------Gl~~s~Ai~~fl~~v~~~~~iPF~~~~ 50 (79)
T 4fxe_A 7 RIDDELKARSYAALEKM-------GVTPSEALRLMLEYIADNERLPFKQTL 50 (79)
T ss_dssp ECCHHHHHHHHHHHHHH-------TCCHHHHHHHHHHHHHHHSSCSSCCHH
T ss_pred EcCHHHHHHHHHHHHHh-------CCCHHHHHHHHHHHHHHhCCCCCcccC
Confidence 45555666666666655 344444444445556667777776553
No 411
>1i27_A Transcription factor IIF; general transcription factor, RAP74, RAP30, TFIIF, RNA polymerase II, winged-helix domain; 1.02A {Homo sapiens} SCOP: a.4.5.30 PDB: 1j2x_A 2k7l_A*
Probab=22.90 E-value=1.8e+02 Score=19.70 Aligned_cols=49 Identities=16% Similarity=0.301 Sum_probs=34.1
Q ss_pred cCCCHHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhc-CCC-HHHHHHHHHHHHHhhh
Q 023713 177 NGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNL-GMT-NQAVKAAQEAVQKSED 240 (278)
Q Consensus 177 ~~v~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L-~l~-~~v~~~A~~i~~~~~~ 240 (278)
.+|.+.++++.++. .|....+++.+|=.++ +++ ++.++.-..|++++..
T Consensus 8 ~~iTEe~VrryL~r---------------kPmTt~dLl~KFK~r~~~~~~~e~v~~~a~ILkki~p 58 (73)
T 1i27_A 8 VQVTEDAVRRYLTR---------------KPMTTKDLLKKFQTKKTGLSSEQTVNVLAQILKRLNP 58 (73)
T ss_dssp SSCCHHHHHHHHHH---------------SCBCHHHHHHTSCHHHHCCCHHHHHHHHHHHHHHHCC
T ss_pred CCcCHHHHHHHHHc---------------CCccHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCH
Confidence 46778777666441 3567899999999887 565 4566666677776654
No 412
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=22.86 E-value=1.6e+02 Score=24.22 Aligned_cols=31 Identities=6% Similarity=-0.015 Sum_probs=27.0
Q ss_pred hcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Q 023713 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193 (278)
Q Consensus 162 ~~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~ 193 (278)
.++.|.++.||++. +++++.++.+..+.|.+
T Consensus 19 ~~~~~~~~~ela~~-~gl~~stv~r~l~~L~~ 49 (249)
T 1mkm_A 19 KNPGDVSVSEIAEK-FNMSVSNAYKYMVVLEE 49 (249)
T ss_dssp HCSSCBCHHHHHHH-TTCCHHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 35568999999994 99999999999998876
No 413
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=22.86 E-value=1.1e+02 Score=23.77 Aligned_cols=30 Identities=10% Similarity=0.045 Sum_probs=26.2
Q ss_pred CCCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 164 ~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
+-+.|..|||+. ++++..++.+.+++|.+.
T Consensus 29 ~~~~s~~eLA~~-lglS~~tv~~~l~~L~~~ 58 (171)
T 2ia0_A 29 DARLTISELSEQ-LKKPESTIHFRIKKLQER 58 (171)
T ss_dssp CTTCCHHHHHHH-HTSCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 346899999995 999999999999999764
No 414
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=22.66 E-value=35 Score=28.62 Aligned_cols=34 Identities=18% Similarity=0.545 Sum_probs=22.7
Q ss_pred CCCCCCCCCCceeEeC-------CC-CceEcCCCcccccccccccc
Q 023713 4 SYCADCKRLTEVVFDH-------SA-GDTICSECGLVLEAYSVDET 41 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~-------~~-G~~vC~~CG~Vl~e~~id~~ 41 (278)
..|..|+.. +|. .. -...|..||-++..+++..|
T Consensus 122 ~~C~~C~~~----~~~~~~~~~~~~~~~p~C~~Cgg~lrP~vv~Fg 163 (246)
T 1yc5_A 122 YYCVRCEKK----YTVEDVIKKLESSDVPLCDDCNSLIRPNIVFFG 163 (246)
T ss_dssp EEETTTCCE----EEHHHHHHHTTTCSSCBCTTTCCBEEEEECCBT
T ss_pred eEcCCCCCC----CcHHHHHHHhccCCCCCCCCCCCccCcceEECC
Confidence 469999862 221 22 24689999999988876544
No 415
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=22.61 E-value=83 Score=23.76 Aligned_cols=31 Identities=6% Similarity=0.012 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLE 196 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~ 196 (278)
...|.+|||.. +|+++.++...+..-++.|.
T Consensus 108 ~g~s~~EIA~~-lgis~~tV~~~l~rar~~Lr 138 (157)
T 2lfw_A 108 EGFSPEDAAYL-IEVDTSEVETLVTEALAEIE 138 (157)
T ss_dssp SCCCHHHHHHT-TTSCHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHHHHHHHHH
Confidence 34789999995 99999888766665555553
No 416
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=22.54 E-value=18 Score=28.15 Aligned_cols=29 Identities=10% Similarity=-0.047 Sum_probs=0.0
Q ss_pred cCCCCCHHHHHHHHcCCCHHHHHHHHHHHH
Q 023713 163 ENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192 (278)
Q Consensus 163 ~~~p~tl~eia~~~~~v~~~~i~~~~~~l~ 192 (278)
-..|.|..+||+ .+|++..++.|..++|.
T Consensus 165 ~~~~~t~~~iA~-~lG~sretlsR~l~~l~ 193 (194)
T 3dn7_A 165 FIQRVPQYLLAS-YLGFTPEYLSEIRKKYI 193 (194)
T ss_dssp ------------------------------
T ss_pred HHHHCCHHHHHH-HhCCCHHHHHHHHHhhc
Confidence 456889999999 59999999999998874
No 417
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=22.51 E-value=73 Score=24.15 Aligned_cols=29 Identities=7% Similarity=-0.033 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Q 023713 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193 (278)
Q Consensus 164 ~~p~tl~eia~~~~~v~~~~i~~~~~~l~~ 193 (278)
+-+.++.||+.. ++++..++.+.++.|.+
T Consensus 60 ~~~~t~~eLa~~-l~~~~~tvs~~l~~Le~ 88 (168)
T 3u2r_A 60 PEGMATLQIADR-LISRAPDITRLIDRLDD 88 (168)
T ss_dssp TSCEEHHHHHHH-C---CTHHHHHHHHHHH
T ss_pred CCCcCHHHHHHH-HCCChhhHHHHHHHHHH
Confidence 568999999995 99999999999999976
No 418
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=22.49 E-value=1e+02 Score=21.88 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHc-CCCHHHHHHHHHHHHHH
Q 023713 165 KPRTVKEFCSVAN-GTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 165 ~p~tl~eia~~~~-~v~~~~i~~~~~~l~~~ 194 (278)
-|.++.||++. + +++..++.+.++.|.+.
T Consensus 34 ~~~~~~eLa~~-l~~is~~tvs~~L~~Le~~ 63 (112)
T 1z7u_A 34 GTKRNGELMRA-LDGITQRVLTDRLREMEKD 63 (112)
T ss_dssp SCBCHHHHHHH-STTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHH-hccCCHHHHHHHHHHHHHC
Confidence 47899999995 8 99999999999999764
No 419
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=22.43 E-value=33 Score=32.37 Aligned_cols=25 Identities=32% Similarity=0.792 Sum_probs=14.5
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCcccccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEA 35 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~e 35 (278)
..||.||.. + +.|+ .|.+||..++.
T Consensus 156 g~cp~c~~~-~-----~~gd-~ce~cg~~~~~ 180 (560)
T 3h99_A 156 GTCPKCKSP-D-----QYGD-NCEVCGATYSP 180 (560)
T ss_dssp EECTTTCCS-S-----EETT-BCTTTCCBCCG
T ss_pred CCCCCCCCc-c-----cccc-hhhhccccCCh
Confidence 358999863 1 2343 36677766543
No 420
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=22.42 E-value=24 Score=20.92 Aligned_cols=15 Identities=20% Similarity=0.678 Sum_probs=11.2
Q ss_pred CCceEcCCCcccccc
Q 023713 21 AGDTICSECGLVLEA 35 (278)
Q Consensus 21 ~G~~vC~~CG~Vl~e 35 (278)
.....|..||..+..
T Consensus 7 ~~~~~C~~C~~~i~~ 21 (39)
T 2i5o_A 7 EDQVPCEKCGSLVPV 21 (39)
T ss_dssp CCEEECTTTCCEEEG
T ss_pred CCCcccccccCcCCc
Confidence 345689999988764
No 421
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=22.30 E-value=42 Score=26.60 Aligned_cols=30 Identities=17% Similarity=0.290 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 164 ~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
..|.|..+||+ .+|++..++.|..++|.+.
T Consensus 162 ~~~~t~~~lA~-~lg~sr~tvsR~l~~L~~~ 191 (213)
T 1o5l_A 162 TLPVTLEELSR-LFGCARPALSRVFQELERE 191 (213)
T ss_dssp -------------------------------
T ss_pred cCCCCHHHHHH-HhCCCHHHHHHHHHHHHHC
Confidence 46789999999 5999999999999999753
No 422
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=22.06 E-value=97 Score=21.15 Aligned_cols=28 Identities=14% Similarity=0.115 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHcCCCHH-HHHHHHHHHHHH
Q 023713 166 PRTVKEFCSVANGTTKK-EIGRAKEFIVKH 194 (278)
Q Consensus 166 p~tl~eia~~~~~v~~~-~i~~~~~~l~~~ 194 (278)
|.|..|||.. ++++.. .+++.+..|.+.
T Consensus 25 ~~ta~eiA~~-Lgit~~~aVr~hL~~Le~e 53 (79)
T 1xmk_A 25 DSSALNLAKN-IGLTKARDINAVLIDMERQ 53 (79)
T ss_dssp CEEHHHHHHH-HCGGGHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHH-cCCCcHHHHHHHHHHHHHC
Confidence 7899999995 999998 999999888764
No 423
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=21.98 E-value=28 Score=24.80 Aligned_cols=23 Identities=22% Similarity=0.819 Sum_probs=16.1
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCcc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGL 31 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~ 31 (278)
..|..||+. + +-. -...|..||.
T Consensus 17 tlCrRCG~~-s--yH~--qK~~Ca~CGy 39 (94)
T 4a18_A 17 TLCRRCGKA-T--YHK--QKLRCAACGY 39 (94)
T ss_dssp EECTTTCSE-E--EET--TTTEESSSCG
T ss_pred ceecCcCch-h--hhh--ccccccccCC
Confidence 359999983 2 332 2558999999
No 424
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=21.85 E-value=89 Score=22.92 Aligned_cols=29 Identities=14% Similarity=0.152 Sum_probs=24.7
Q ss_pred CCC-CHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 165 KPR-TVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 165 ~p~-tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
..+ |..++|.. ++|+..+++++++.|...
T Consensus 35 ~~Lps~~~La~~-~~vSr~tvr~Al~~L~~~ 64 (125)
T 3neu_A 35 DKLPSVREMGVK-LAVNPNTVSRAYQELERA 64 (125)
T ss_dssp CBCCCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 344 69999995 999999999999999863
No 425
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=21.65 E-value=64 Score=23.52 Aligned_cols=29 Identities=10% Similarity=0.074 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
-|.+..||++. ++++..++.+.++.|.+.
T Consensus 50 ~~~~~~ela~~-l~~~~~tvs~~l~~L~~~ 78 (142)
T 2bv6_A 50 SPVNVKKVVTE-LALDTGTVSPLLKRMEQV 78 (142)
T ss_dssp SEEEHHHHHHH-TTCCTTTHHHHHHHHHHT
T ss_pred CCcCHHHHHHH-HCCChhhHHHHHHHHHHC
Confidence 37899999995 999999999999999874
No 426
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=21.59 E-value=1.4e+02 Score=22.64 Aligned_cols=41 Identities=10% Similarity=0.067 Sum_probs=28.8
Q ss_pred cHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHcCCCHHHHHHHHH
Q 023713 147 NQEAIVAACLYIACRQENK-PRTVKEFCSVANGTTKKEIGRAKE 189 (278)
Q Consensus 147 ~~~~~aAAclY~acR~~~~-p~tl~eia~~~~~v~~~~i~~~~~ 189 (278)
+.+.+..|++=+..+ .|. ..|+.+|+.. .|+++.+|-+.|.
T Consensus 5 ~r~~Il~aa~~l~~~-~G~~~~t~~~Ia~~-agvs~~t~Y~~F~ 46 (185)
T 2yve_A 5 KKEMILRTAIDYIGE-YSLETLSYDSLAEA-TGLSKSGLIYHFP 46 (185)
T ss_dssp HHHHHHHHHHHHHHH-SCSTTCCHHHHHHH-HCCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHH-cChhhccHHHHHHH-hCCChHHHHHhCc
Confidence 345566666555544 454 6999999995 8999888877643
No 427
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=21.58 E-value=24 Score=26.89 Aligned_cols=30 Identities=30% Similarity=0.536 Sum_probs=13.6
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCcccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVL 33 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl 33 (278)
..||+|++.+.+-.+.......|..|+.-+
T Consensus 15 ~~c~~c~~~~~~~~~r~~~~~~~~~~~~~~ 44 (155)
T 2ppt_A 15 LTCLACGQANKVPSDRLAAGPKCGICGAGL 44 (155)
T ss_dssp EECTTTCCEEEEEGGGTTSCCBCTTTCCBS
T ss_pred EECccccccccCCcccccCCCCCCcCCccc
Confidence 346666653222222223344565555443
No 428
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=21.54 E-value=61 Score=19.47 Aligned_cols=29 Identities=17% Similarity=0.721 Sum_probs=18.8
Q ss_pred CCCCCCCCCCCceeEeCCCCceEcCCCccccc
Q 023713 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (278)
Q Consensus 3 ~~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~ 34 (278)
...|..|+. +++--..--+.|.+||.++-
T Consensus 11 pt~C~~C~~---~l~g~~~qg~~C~~C~~~~H 39 (50)
T 1ptq_A 11 PTFCDHCGS---LLWGLVKQGLKCEDCGMNVH 39 (50)
T ss_dssp CCBCTTTCC---BCCSSSSCEEEETTTCCEEC
T ss_pred CCCcCCCCc---eeeccCCccCEeCCCCCeEC
Confidence 467999986 23322223367999998874
No 429
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=21.45 E-value=66 Score=23.20 Aligned_cols=29 Identities=3% Similarity=0.056 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
-|.++.||++. ++++..++.+.++.|.+.
T Consensus 46 ~~~~~~ela~~-l~~~~~tvs~~l~~L~~~ 74 (139)
T 3bja_A 46 GKVSMSKLIEN-MGCVPSNMTTMIQRMKRD 74 (139)
T ss_dssp CSEEHHHHHHH-CSSCCTTHHHHHHHHHHT
T ss_pred CCcCHHHHHHH-HCCChhHHHHHHHHHHHC
Confidence 47999999995 999999999999999874
No 430
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=21.42 E-value=88 Score=23.05 Aligned_cols=29 Identities=10% Similarity=0.110 Sum_probs=24.9
Q ss_pred CCC-CHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 165 KPR-TVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 165 ~p~-tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
..+ +..++|.. ++|+..+++++++.|...
T Consensus 33 ~~lPse~~La~~-~~vSr~tvr~Al~~L~~~ 62 (126)
T 3by6_A 33 DQLPSVRETALQ-EKINPNTVAKAYKELEAQ 62 (126)
T ss_dssp CEECCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CcCcCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 345 89999995 999999999999999764
No 431
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=21.21 E-value=59 Score=28.13 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHHcCCCHHHHHHHHH
Q 023713 164 NKPRTVKEFCSVANGTTKKEIGRAKE 189 (278)
Q Consensus 164 ~~p~tl~eia~~~~~v~~~~i~~~~~ 189 (278)
....|++|||.. +||+..++.++++
T Consensus 7 ~~~~Ti~diA~~-aGVS~~TVSrvLn 31 (366)
T 3h5t_A 7 QQYGTLASIAAK-LGISRTTVSNAYN 31 (366)
T ss_dssp CCTTHHHHHHHH-HTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHH-hCCCHHHHHHHHC
Confidence 345799999995 9999999998874
No 432
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=21.09 E-value=2.2e+02 Score=19.86 Aligned_cols=22 Identities=0% Similarity=-0.025 Sum_probs=16.0
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHH
Q 023713 166 PRTVKEFCSVANGTTKKEIGRAK 188 (278)
Q Consensus 166 p~tl~eia~~~~~v~~~~i~~~~ 188 (278)
..|..++|.. +|++..+|.+..
T Consensus 22 glsq~~lA~~-~gis~~~i~~~e 43 (114)
T 3op9_A 22 GLKNHQIAEL-LNVQTRTVAYYM 43 (114)
T ss_dssp TCCHHHHHHH-HTSCHHHHHHHH
T ss_pred CCCHHHHHHH-HCcCHHHHHHHH
Confidence 4578888884 788888877653
No 433
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=21.03 E-value=29 Score=31.25 Aligned_cols=31 Identities=26% Similarity=0.430 Sum_probs=23.3
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCccccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~ 34 (278)
..|-+||+...--....-|..+|.+|.-|-.
T Consensus 35 ~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr 65 (386)
T 3lju_X 35 ARCADCGAPDPDWASYTLGVFICLSCSGIHR 65 (386)
T ss_dssp SBCTTTCCBSCCEEETTTTEEECHHHHHHHH
T ss_pred CcCccCCCCCCCeEEecccEEEhhhhchHhh
Confidence 4699999843334455789999999998865
No 434
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=20.93 E-value=1.4e+02 Score=21.58 Aligned_cols=29 Identities=14% Similarity=0.292 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~ 194 (278)
-|.|+.||++. ++++..++.+.++.|.+.
T Consensus 50 ~~~t~~eLa~~-l~~~~~~vs~~l~~L~~~ 78 (143)
T 3oop_A 50 EPISQKEIALW-TKKDTPTVNRIVDVLLRK 78 (143)
T ss_dssp SSEEHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHH-HCCCHhhHHHHHHHHHHC
Confidence 57899999995 999999999999999763
No 435
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=20.89 E-value=75 Score=22.44 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=20.1
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHHH
Q 023713 167 RTVKEFCSVANGTTKKEIGRAKEF 190 (278)
Q Consensus 167 ~tl~eia~~~~~v~~~~i~~~~~~ 190 (278)
.|+.|||.. +|++..++++.+..
T Consensus 21 ~ti~dlA~~-~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 21 KTVRVIAKE-FGVSKSTVHKDLTE 43 (93)
T ss_dssp CCHHHHHHH-HTSCHHHHHHHHTT
T ss_pred CCHHHHHHH-HCCCHHHHHHHHcC
Confidence 799999995 99999999998653
No 436
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=20.87 E-value=1e+02 Score=20.54 Aligned_cols=46 Identities=7% Similarity=-0.008 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQ 226 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 226 (278)
...|..++|.. +|++..+|.+..+ |.. . .+.+.+.+++..|+++.+
T Consensus 29 ~glsq~~lA~~-~gis~~~is~~e~------g~~------~---~~~~~l~~ia~~l~v~~~ 74 (92)
T 1lmb_3 29 LGLSQESVADK-MGMGQSGVGALFN------GIN------A---LNAYNAALLAKILKVSVE 74 (92)
T ss_dssp HTCCHHHHHHH-HTSCHHHHHHHHT------TSS------C---CCHHHHHHHHHHHTSCGG
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHc------CCC------C---CCHHHHHHHHHHHCCCHH
Confidence 35789999995 8999988877643 211 1 234678899999998754
No 437
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=20.82 E-value=1.5e+02 Score=20.39 Aligned_cols=47 Identities=17% Similarity=0.231 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHHH
Q 023713 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQA 227 (278)
Q Consensus 165 ~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v 227 (278)
...|..++|.. +|++..+|.+..+ |.. .. ..+.+.+++..|+++.+.
T Consensus 30 ~gltq~~lA~~-~gis~~~is~~e~------g~~--------~~-~~~~l~~l~~~l~v~~~~ 76 (104)
T 3cec_A 30 LDINTANFAEI-LGVSNQTIQEVIN------GQR--------SI-TVDIAIRLGKALGNGPRL 76 (104)
T ss_dssp HTCCHHHHHHH-HTSCHHHHHHHHT------TSS--------CC-CHHHHHHHHHHHTSCHHH
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHc------CCc--------CC-CHHHHHHHHHHHCcCHHH
Confidence 35789999995 8999998877643 111 11 346788999999998663
No 438
>2hu9_A MERP, mercuric transport protein periplasmic component; copper chaperone, iron-sufur protein, COPZ, ATX1, ATOX1, metal transport; 1.78A {Archaeoglobus fulgidus}
Probab=20.69 E-value=38 Score=25.71 Aligned_cols=10 Identities=20% Similarity=0.564 Sum_probs=8.0
Q ss_pred CCCCCCCCCC
Q 023713 3 DSYCADCKRL 12 (278)
Q Consensus 3 ~~~Cp~Cg~~ 12 (278)
|+.||.||..
T Consensus 1 ~~~CP~Cg~~ 10 (130)
T 2hu9_A 1 MMRCPECSTE 10 (130)
T ss_dssp CCBCTTTCCB
T ss_pred CCcCCCCCCc
Confidence 5679999974
No 439
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=20.67 E-value=42 Score=34.50 Aligned_cols=31 Identities=35% Similarity=0.753 Sum_probs=21.4
Q ss_pred CCCCCCCCCceeEeCCCC------ceEcCCCccccccc
Q 023713 5 YCADCKRLTEVVFDHSAG------DTICSECGLVLEAY 36 (278)
Q Consensus 5 ~Cp~Cg~~~~vv~D~~~G------~~vC~~CG~Vl~e~ 36 (278)
.||+|.- .+.+.|.+-| +-.|+.||.-+.-.
T Consensus 504 ~c~~c~~-~ef~~~~~~~~g~dlp~k~cp~cg~~~~~d 540 (1041)
T 3f2b_A 504 VCPNCKH-SEFFNDGSVGSGFDLPDKNCPRCGTKYKKD 540 (1041)
T ss_dssp ECTTTCC-EEECCSSCCSCGGGSCCCBCTTTCCBCEEE
T ss_pred cCccccc-cccccccccccccCCccccCcccccccccc
Confidence 6999997 5555543333 56899999976433
No 440
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=20.62 E-value=55 Score=27.04 Aligned_cols=29 Identities=21% Similarity=0.554 Sum_probs=20.6
Q ss_pred CCCCCCCCCCceeEeCCCCceEcCCCccccccc
Q 023713 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAY 36 (278)
Q Consensus 4 ~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~e~ 36 (278)
..|..|+.. |..-.-.--|..||.|+=..
T Consensus 165 ~~C~~C~~~----F~~~~RrhHCR~CG~v~C~~ 193 (226)
T 3zyq_A 165 EECHRCRVQ----FGVMTRKHHCRACGQIFCGK 193 (226)
T ss_dssp SBCTTTCCB----CBTTBCCEECTTTCCEECTT
T ss_pred CCCcCcCCC----CCccccccccCCCcCEeChh
Confidence 579999873 44455677888888887533
No 441
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=20.62 E-value=73 Score=20.54 Aligned_cols=31 Identities=16% Similarity=0.644 Sum_probs=19.9
Q ss_pred CCCCCCCCCCCceeEeCCCCceEcCCCccccccc
Q 023713 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAY 36 (278)
Q Consensus 3 ~~~Cp~Cg~~~~vv~D~~~G~~vC~~CG~Vl~e~ 36 (278)
...|..|+. +++-...--+.|.+|+.++=..
T Consensus 23 pt~C~~C~~---~l~Gl~~qg~~C~~C~~~~Hk~ 53 (65)
T 2enz_A 23 PTFCEHCGT---LLWGLARQGLKCDACGMNVHHR 53 (65)
T ss_dssp CCBCSSSCC---BCCCSSSCSEEESSSCCEECTT
T ss_pred CcCchhcCh---hheecCCcccccCCCCCccCHh
Confidence 467999986 2332222346799999887543
No 442
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=20.58 E-value=30 Score=24.60 Aligned_cols=22 Identities=36% Similarity=0.943 Sum_probs=15.1
Q ss_pred CCCCCCCCCceeEeCCCCceEcCCCcc
Q 023713 5 YCADCKRLTEVVFDHSAGDTICSECGL 31 (278)
Q Consensus 5 ~Cp~Cg~~~~vv~D~~~G~~vC~~CG~ 31 (278)
.|..||+. + +-. -...|..||.
T Consensus 18 lCrRCG~~-s--yH~--qK~~Ca~CGy 39 (94)
T 3iz5_l 18 LCVRCGRR-S--FHL--QKSTCSSCGY 39 (94)
T ss_dssp ECTTTCSE-E--EEG--GGTEETTTCS
T ss_pred eecCcCch-h--hhc--ccccccccCC
Confidence 58999983 3 322 2458999998
No 443
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=20.50 E-value=47 Score=19.36 Aligned_cols=22 Identities=9% Similarity=0.052 Sum_probs=18.7
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHH
Q 023713 167 RTVKEFCSVANGTTKKEIGRAKE 189 (278)
Q Consensus 167 ~tl~eia~~~~~v~~~~i~~~~~ 189 (278)
.+..+||.. ++++..+|.+.++
T Consensus 22 ~s~~~ia~~-lgvs~~Tv~r~l~ 43 (52)
T 1jko_C 22 HPRQQLAII-FGIGVSTLYRYFP 43 (52)
T ss_dssp CCHHHHHHT-TSCCHHHHHHHSC
T ss_pred CCHHHHHHH-HCCCHHHHHHHHH
Confidence 789999995 9999999987654
No 444
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=20.48 E-value=1.7e+02 Score=20.37 Aligned_cols=48 Identities=8% Similarity=0.102 Sum_probs=34.2
Q ss_pred cCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHHhhcCCCHH
Q 023713 163 ENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQ 226 (278)
Q Consensus 163 ~~~p~tl~eia~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 226 (278)
.....|..++|.. +|++..+|.+..+ |. . . .+.+.+.+++..|+++.+
T Consensus 21 ~~~glsq~~lA~~-~gis~~~is~~e~------g~-------~-~-~~~~~l~~la~~l~~~~~ 68 (113)
T 2eby_A 21 EPLDLKINELAEL-LHVHRNSVSALIN------NN-------R-K-LTTEMAFRLAKVFDTTVD 68 (113)
T ss_dssp TTTTCCHHHHHHH-HTSCHHHHHHHHT------TS-------S-C-CCHHHHHHHHHHHTCCHH
T ss_pred HHcCCCHHHHHHH-HCcCHHHHHHHHc------CC-------C-C-CCHHHHHHHHHHHCcCHH
Confidence 3456899999995 8999988877633 11 1 1 134678889999998866
No 445
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=20.46 E-value=4e+02 Score=23.16 Aligned_cols=83 Identities=10% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCC-CHHHHHHHHHHH
Q 023713 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT-TKKEIGRAKEFI 191 (278)
Q Consensus 113 I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~gr~~~~~aAAclY~acR~~~~p~tl~eia~~~~~v-~~~~i~~~~~~l 191 (278)
+..+|+.++++.....+ +|++........=....-+--|.-++.- ...++.|||.. +|- +...+.+.||+
T Consensus 324 ~~~~a~~~~~s~~~l~r---~f~~~~g~s~~~~~~~~r~~~a~~~L~~----~~~~i~~ia~~-~Gf~~~~~f~~~Fk~- 394 (412)
T 4fe7_A 324 VDQVLDAVGISRSNLEK---RFKEEVGETIHAMIHAEKLEKARSLLIS----TTLSINEISQM-CGYPSLQYFYSVFKK- 394 (412)
T ss_dssp HHHHHHHTTCCHHHHHH---HHHHHHSSCHHHHHHHHHHHHHHHHHHH----CCCCHHHHHHH-TTCSCHHHHHHHHHH-
T ss_pred HHHHHHHHCcCHHHHHH---HHHHHHCcCHHHHHHHHHHHHHHHHHhc----CCCCHHHHHHH-cCCCCHHHHHHHHHH-
Q ss_pred HHHhhhhcccccccCCCCHHHHHHHH
Q 023713 192 VKHLEAEMGQSVEMGTIHASDYLRRF 217 (278)
Q Consensus 192 ~~~L~~~~~~~~~~~~~~p~~~i~r~ 217 (278)
.....|.+|-.++
T Consensus 395 -------------~~g~tP~~~r~~~ 407 (412)
T 4fe7_A 395 -------------AYDTTPKEYRDVN 407 (412)
T ss_dssp -------------HSSSCHHHHHHHH
T ss_pred -------------HHCcCHHHHHHhc
No 446
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=20.00 E-value=39 Score=29.10 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=15.2
Q ss_pred ceEcCCCcccccccccccc
Q 023713 23 DTICSECGLVLEAYSVDET 41 (278)
Q Consensus 23 ~~vC~~CG~Vl~e~~id~~ 41 (278)
...|..||-++..+++-.|
T Consensus 163 ~P~C~~Cgg~lrP~vv~FG 181 (289)
T 1q1a_A 163 FVKCDVCGELVKPAIVFFG 181 (289)
T ss_dssp CCBCTTTCCBEEEEECCBT
T ss_pred CccCCCCCCEECCCEEEcC
Confidence 3589999999988877555
Done!