Query 023714
Match_columns 278
No_of_seqs 108 out of 154
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 06:06:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023714.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023714hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4267 Predicted membrane pro 99.9 3E-22 6.5E-27 164.3 5.4 76 198-276 1-78 (110)
2 PF03647 Tmemb_14: Transmembra 99.6 5.3E-17 1.2E-21 128.3 0.3 74 201-276 1-74 (96)
3 COG5548 Small integral membran 98.8 1.8E-08 3.8E-13 82.5 6.6 72 203-276 6-77 (105)
4 PF06570 DUF1129: Protein of u 94.1 1.6 3.5E-05 38.3 12.8 25 198-222 75-105 (206)
5 PRK05771 V-type ATP synthase s 89.0 7.1 0.00015 39.8 12.5 71 167-237 315-413 (646)
6 PRK06569 F0F1 ATP synthase sub 85.8 8 0.00017 34.0 9.3 68 109-176 56-123 (155)
7 PF04156 IncA: IncA protein; 83.7 2.4 5.1E-05 36.1 5.1 45 204-248 11-62 (191)
8 PRK10884 SH3 domain-containing 83.1 14 0.00031 33.4 10.0 22 135-156 137-158 (206)
9 PF05478 Prominin: Prominin; 82.4 10 0.00022 40.1 10.0 41 111-151 320-360 (806)
10 PF06738 DUF1212: Protein of u 81.0 9.3 0.0002 32.4 7.7 55 214-271 114-168 (193)
11 PF11833 DUF3353: Protein of u 80.8 15 0.00032 33.1 9.2 34 92-126 3-36 (194)
12 PRK09174 F0F1 ATP synthase sub 74.1 42 0.00091 30.2 10.1 77 87-163 95-179 (204)
13 CHL00118 atpG ATP synthase CF0 71.7 61 0.0013 27.4 10.1 74 89-162 66-147 (156)
14 PF12732 YtxH: YtxH-like prote 71.5 11 0.00025 28.1 5.1 7 142-148 53-59 (74)
15 PF05957 DUF883: Bacterial pro 71.3 46 0.00099 25.8 9.8 52 99-150 4-55 (94)
16 PF11947 DUF3464: Protein of u 69.7 9.9 0.00021 33.5 5.0 55 199-253 65-126 (153)
17 PF15556 Zwint: ZW10 interacto 69.4 75 0.0016 30.2 10.9 68 95-162 61-148 (252)
18 PRK09174 F0F1 ATP synthase sub 68.0 58 0.0013 29.3 9.7 74 110-183 100-174 (204)
19 PRK13454 F0F1 ATP synthase sub 68.0 75 0.0016 27.7 10.1 79 88-166 74-160 (181)
20 PF13807 GNVR: G-rich domain o 66.0 19 0.00042 27.2 5.4 51 141-197 8-58 (82)
21 TIGR03017 EpsF chain length de 65.6 43 0.00094 31.8 8.8 52 141-198 346-397 (444)
22 PF15099 PIRT: Phosphoinositid 65.5 9 0.0002 33.2 3.9 63 176-244 30-100 (129)
23 PRK09430 djlA Dna-J like membr 64.8 6.7 0.00014 36.4 3.2 25 212-237 7-31 (267)
24 PF04391 DUF533: Protein of un 63.8 14 0.00029 33.3 4.9 41 213-253 12-56 (188)
25 PF04286 DUF445: Protein of un 63.8 1.1E+02 0.0025 27.6 10.9 20 165-184 300-320 (367)
26 PF03729 DUF308: Short repeat 63.5 48 0.001 23.1 7.4 64 207-271 2-68 (72)
27 PF15508 NAAA-beta: beta subun 63.0 57 0.0012 25.6 7.7 30 97-129 13-42 (95)
28 PF07155 ECF-ribofla_trS: ECF- 62.8 53 0.0011 27.3 7.9 52 202-253 48-101 (169)
29 PRK14471 F0F1 ATP synthase sub 62.6 94 0.002 26.2 10.1 76 87-162 50-133 (164)
30 PRK08476 F0F1 ATP synthase sub 61.1 99 0.0021 25.9 9.9 65 89-156 51-115 (141)
31 PRK13895 conjugal transfer pro 60.3 78 0.0017 28.1 8.7 39 96-138 38-77 (144)
32 PF05957 DUF883: Bacterial pro 60.2 78 0.0017 24.5 12.1 7 104-110 5-11 (94)
33 cd02432 Nodulin-21_like_1 Nodu 60.0 75 0.0016 28.8 8.9 44 212-257 148-195 (218)
34 TIGR03818 MotA1 flagellar moto 59.1 79 0.0017 29.9 9.2 76 167-244 129-212 (282)
35 PRK14475 F0F1 ATP synthase sub 59.0 1.1E+02 0.0025 26.0 10.1 77 87-163 52-136 (167)
36 PF05884 ZYG-11_interact: Inte 58.1 1.9E+02 0.0042 28.3 14.6 64 151-234 68-135 (299)
37 PRK15374 pathogenicity island 57.5 1.1E+02 0.0025 32.4 10.7 74 126-225 266-339 (593)
38 PRK06926 flagellar motor prote 57.4 52 0.0011 31.1 7.7 93 136-229 80-184 (271)
39 PRK13717 conjugal transfer pro 57.0 31 0.00067 30.0 5.6 41 102-143 52-92 (128)
40 PF12597 DUF3767: Protein of u 56.7 24 0.00052 29.6 4.8 22 175-198 16-37 (118)
41 PRK06568 F0F1 ATP synthase sub 56.3 1.4E+02 0.0029 26.2 9.5 36 131-166 72-107 (154)
42 PF14362 DUF4407: Domain of un 56.1 53 0.0012 30.1 7.4 37 205-241 16-62 (301)
43 TIGR00659 conserved hypothetic 55.9 34 0.00074 31.8 6.1 78 198-275 1-81 (226)
44 COG1184 GCD2 Translation initi 55.4 55 0.0012 31.7 7.7 57 131-189 87-143 (301)
45 PF12822 DUF3816: Protein of u 54.5 57 0.0012 26.8 6.7 24 200-223 39-63 (172)
46 COG3247 HdeD Uncharacterized c 54.1 1E+02 0.0022 27.9 8.7 69 200-271 74-146 (185)
47 PRK00293 dipZ thiol:disulfide 53.5 62 0.0013 33.1 8.1 60 195-254 287-358 (571)
48 PF12291 DUF3623: Protein of u 53.3 80 0.0017 30.2 8.2 58 198-255 1-61 (259)
49 TIGR01144 ATP_synt_b ATP synth 53.0 1.3E+02 0.0027 24.7 11.4 76 87-162 37-120 (147)
50 PF12751 Vac7: Vacuolar segreg 52.8 7.6 0.00016 38.8 1.5 28 199-226 302-329 (387)
51 PRK13454 F0F1 ATP synthase sub 52.7 1.6E+02 0.0034 25.7 9.7 38 90-127 66-103 (181)
52 PF00957 Synaptobrevin: Synapt 52.1 17 0.00037 27.7 3.0 25 190-214 55-79 (89)
53 TIGR02744 TrbI_Ftype type-F co 51.5 47 0.001 28.1 5.7 41 102-143 39-79 (112)
54 PF14007 YtpI: YtpI-like prote 51.4 55 0.0012 26.5 5.9 47 203-249 35-84 (89)
55 PF02439 Adeno_E3_CR2: Adenovi 51.2 28 0.00062 24.6 3.7 32 222-253 2-34 (38)
56 PF11657 Activator-TraM: Trans 51.1 1.5E+02 0.0033 25.9 9.0 60 97-162 39-98 (144)
57 PF13767 DUF4168: Domain of un 50.6 1.1E+02 0.0023 23.2 7.7 26 104-129 4-29 (78)
58 PF01102 Glycophorin_A: Glycop 50.5 19 0.00042 30.5 3.4 12 193-204 53-64 (122)
59 PF13858 DUF4199: Protein of u 50.3 74 0.0016 26.1 6.7 49 203-251 2-54 (163)
60 cd02434 Nodulin-21_like_3 Nodu 49.4 2E+02 0.0044 26.0 10.8 22 226-247 170-193 (225)
61 PF02535 Zip: ZIP Zinc transpo 49.0 1.1E+02 0.0023 27.4 8.0 58 196-253 228-294 (317)
62 PF05529 Bap31: B-cell recepto 48.5 1.1E+02 0.0024 26.4 7.9 35 133-167 157-191 (192)
63 PRK13453 F0F1 ATP synthase sub 48.3 1.8E+02 0.0039 25.0 11.6 76 87-162 60-143 (173)
64 PRK13428 F0F1 ATP synthase sub 48.2 3E+02 0.0064 27.5 12.0 67 88-154 44-118 (445)
65 PF04420 CHD5: CHD5-like prote 48.1 38 0.00083 29.2 4.9 51 98-162 41-91 (161)
66 PF05283 MGC-24: Multi-glycosy 47.6 20 0.00044 32.5 3.2 28 224-251 159-186 (186)
67 PF03302 VSP: Giardia variant- 47.3 11 0.00023 36.9 1.5 21 201-221 368-388 (397)
68 PF03203 MerC: MerC mercury re 46.4 1.3E+02 0.0029 24.3 7.5 7 249-255 59-65 (116)
69 PF09925 DUF2157: Predicted me 45.9 1.6E+02 0.0035 24.4 8.2 10 247-256 111-120 (145)
70 COG4858 Uncharacterized membra 45.0 1.3E+02 0.0028 28.3 8.0 47 205-251 103-154 (226)
71 PF04888 SseC: Secretion syste 44.6 1.3E+02 0.0027 27.8 8.0 19 225-243 79-97 (306)
72 TIGR02762 TraL_TIGR type IV co 44.3 59 0.0013 26.0 5.1 42 209-255 24-65 (95)
73 TIGR00984 3a0801s03tim44 mitoc 42.9 1.2E+02 0.0027 30.2 8.1 50 101-150 12-73 (378)
74 KOG3759 Uncharacterized RUN do 42.9 1.1E+02 0.0024 32.2 7.9 57 100-159 145-224 (621)
75 PRK10255 PTS system N-acetyl g 42.4 53 0.0011 34.7 5.8 51 201-251 56-117 (648)
76 PRK14473 F0F1 ATP synthase sub 42.0 2.1E+02 0.0046 24.1 10.1 74 88-161 51-132 (164)
77 PF04246 RseC_MucC: Positive r 40.7 48 0.001 27.1 4.2 46 203-252 75-120 (135)
78 PRK12482 flagellar motor prote 39.9 2.3E+02 0.005 27.2 9.1 69 175-244 139-212 (287)
79 TIGR01005 eps_transp_fam exopo 39.8 4.1E+02 0.009 27.6 11.6 34 180-214 414-447 (754)
80 cd01020 TroA_b Metal binding p 39.1 2.7E+02 0.0058 25.2 9.1 91 97-187 99-204 (264)
81 PRK13455 F0F1 ATP synthase sub 39.0 2.5E+02 0.0055 24.2 9.5 76 87-162 69-152 (184)
82 KOG3758 Uncharacterized conser 38.8 95 0.0021 33.3 6.9 93 102-203 76-174 (655)
83 PRK08124 flagellar motor prote 38.4 1.4E+02 0.0031 27.7 7.4 68 175-244 121-193 (263)
84 PF01988 VIT1: VIT family; In 38.3 2.6E+02 0.0057 24.7 8.7 33 216-248 150-184 (213)
85 PF09925 DUF2157: Predicted me 37.8 2.3E+02 0.0049 23.5 7.8 49 203-252 35-86 (145)
86 PF01706 FliG_C: FliG C-termin 37.6 95 0.0021 24.7 5.4 52 114-165 47-106 (110)
87 TIGR00464 gltX_bact glutamyl-t 37.4 2.2E+02 0.0049 28.6 9.0 87 101-187 344-456 (470)
88 PRK14472 F0F1 ATP synthase sub 37.4 2.6E+02 0.0057 23.9 10.1 70 92-161 65-142 (175)
89 PF10267 Tmemb_cc2: Predicted 37.2 4.5E+02 0.0098 26.5 12.0 50 130-186 262-311 (395)
90 COG4694 Uncharacterized protei 36.3 1.6E+02 0.0035 31.8 8.1 107 101-231 429-541 (758)
91 PRK13455 F0F1 ATP synthase sub 36.2 2.8E+02 0.0061 23.9 12.0 12 103-114 78-89 (184)
92 TIGR01558 sm_term_P27 phage te 36.0 2.3E+02 0.0049 22.7 7.9 17 95-111 7-23 (116)
93 PF14723 SSFA2_C: Sperm-specif 35.8 2.5E+02 0.0054 25.8 8.2 63 99-162 107-170 (179)
94 PF01988 VIT1: VIT family; In 35.8 3.1E+02 0.0068 24.2 11.9 19 122-142 84-102 (213)
95 PF01226 Form_Nir_trans: Forma 35.8 20 0.00043 32.9 1.4 65 180-244 3-74 (250)
96 PF14257 DUF4349: Domain of un 35.7 3.3E+02 0.0072 24.5 9.4 75 100-176 105-196 (262)
97 PF07739 TipAS: TipAS antibiot 35.6 67 0.0015 24.7 4.1 44 96-141 4-47 (118)
98 PRK08307 stage III sporulation 35.5 1.6E+02 0.0035 25.6 6.8 56 94-153 82-148 (171)
99 cd01019 ZnuA Zinc binding prot 35.0 1.5E+02 0.0032 27.3 6.8 51 97-147 125-175 (286)
100 PTZ00236 mitochondrial import 34.5 2.1E+02 0.0046 25.6 7.5 25 197-222 14-38 (164)
101 PF14023 DUF4239: Protein of u 34.3 3.1E+02 0.0066 23.7 11.6 18 145-162 53-70 (209)
102 PF11172 DUF2959: Protein of u 34.3 3.3E+02 0.0072 25.4 8.9 75 92-167 34-108 (201)
103 PRK03557 zinc transporter ZitB 33.5 2.7E+02 0.0058 26.0 8.4 54 201-254 21-76 (312)
104 PF10310 DUF2413: Protein of u 33.4 1.4E+02 0.003 30.4 6.9 33 175-208 186-220 (444)
105 PF01496 V_ATPase_I: V-type AT 33.3 36 0.00078 35.5 2.9 61 177-237 345-437 (759)
106 TIGR02865 spore_II_E stage II 33.1 1E+02 0.0022 32.8 6.2 11 260-270 266-276 (764)
107 PRK04201 zinc transporter ZupT 32.6 2.1E+02 0.0045 26.2 7.4 29 195-223 178-206 (265)
108 PF03779 SPW: SPW repeat; Int 32.1 66 0.0014 23.4 3.3 44 204-249 5-49 (51)
109 PRK06743 flagellar motor prote 32.0 1.7E+02 0.0037 27.5 6.8 106 137-244 73-189 (254)
110 PF10883 DUF2681: Protein of u 32.0 50 0.0011 26.8 2.9 26 229-254 6-31 (87)
111 PF13335 Mg_chelatase_2: Magne 31.6 2.1E+02 0.0045 22.8 6.3 83 95-185 2-93 (96)
112 COG2979 Uncharacterized protei 31.6 1.3E+02 0.0029 28.4 6.0 23 228-253 62-84 (225)
113 PRK07194 fliG flagellar motor 31.6 77 0.0017 30.3 4.6 54 121-174 274-331 (334)
114 KOG4119 G protein gamma subuni 31.5 93 0.002 24.5 4.3 41 135-179 12-52 (71)
115 PRK08404 V-type ATP synthase s 31.5 2.8E+02 0.0061 22.4 11.0 73 98-173 22-94 (103)
116 PF13829 DUF4191: Domain of un 31.2 88 0.0019 29.3 4.7 56 177-237 9-65 (224)
117 PRK13461 F0F1 ATP synthase sub 31.2 3.2E+02 0.0068 22.9 11.4 73 90-162 50-130 (159)
118 PF04474 DUF554: Protein of un 31.0 3.1E+02 0.0067 25.6 8.2 62 205-270 5-69 (226)
119 PRK06231 F0F1 ATP synthase sub 30.9 3.9E+02 0.0085 23.9 10.1 66 89-154 92-165 (205)
120 TIGR00400 mgtE Mg2+ transporte 30.7 2E+02 0.0043 28.3 7.3 27 198-224 356-383 (449)
121 PF09972 DUF2207: Predicted me 30.6 4.7E+02 0.01 24.7 9.8 22 103-124 333-354 (511)
122 PRK14475 F0F1 ATP synthase sub 30.6 3.4E+02 0.0074 23.1 9.5 39 90-128 45-83 (167)
123 TIGR00220 mscL large conductan 30.3 57 0.0012 28.0 3.1 25 214-238 3-27 (127)
124 KOG2580 Mitochondrial import i 30.2 2E+02 0.0043 29.8 7.3 42 102-143 82-131 (459)
125 PF11990 DUF3487: Protein of u 30.1 2.3E+02 0.0049 23.9 6.7 46 222-267 48-95 (121)
126 TIGR01760 tape_meas_TP901 phag 30.0 1.7E+02 0.0036 26.8 6.3 48 142-199 284-331 (350)
127 COG0803 LraI ABC-type metal io 29.8 2.4E+02 0.0051 26.4 7.4 88 97-187 137-239 (303)
128 cd00068 GGL G protein gamma su 29.8 86 0.0019 22.9 3.6 41 134-178 3-43 (57)
129 PF07464 ApoLp-III: Apolipopho 29.8 49 0.0011 29.0 2.7 23 96-118 59-81 (155)
130 PF09991 DUF2232: Predicted me 29.7 3.7E+02 0.0081 23.6 8.2 38 207-244 39-77 (290)
131 cd07912 Tweety_N N-terminal do 29.4 6.1E+02 0.013 25.7 12.8 40 206-246 217-256 (418)
132 PRK09173 F0F1 ATP synthase sub 29.3 3.4E+02 0.0074 22.7 10.1 37 87-123 44-80 (159)
133 PF05461 ApoL: Apolipoprotein 29.0 92 0.002 30.0 4.6 52 194-245 87-148 (313)
134 TIGR03750 conj_TIGR03750 conju 29.0 2.9E+02 0.0064 23.3 7.1 53 211-264 35-89 (111)
135 PF06013 WXG100: Proteins of 1 29.0 1.8E+02 0.0038 20.3 5.1 38 130-167 44-81 (86)
136 COG3759 Predicted membrane pro 28.9 1.1E+02 0.0025 26.4 4.7 43 206-248 57-99 (121)
137 PF11190 DUF2976: Protein of u 28.8 1.5E+02 0.0033 24.0 5.2 29 241-269 45-73 (87)
138 cd00907 Bacterioferritin Bacte 28.7 3.1E+02 0.0067 22.0 9.0 71 98-171 82-152 (153)
139 PHA00490 terminal protein 28.4 58 0.0013 31.0 3.1 100 98-211 56-160 (266)
140 PF09548 Spore_III_AB: Stage I 28.1 2.5E+02 0.0055 24.1 6.8 56 95-154 82-148 (170)
141 PF02038 ATP1G1_PLM_MAT8: ATP1 28.1 64 0.0014 24.0 2.7 16 229-244 16-31 (50)
142 PRK10711 hypothetical protein; 28.0 2E+02 0.0043 27.0 6.5 72 204-275 8-82 (231)
143 PF12301 CD99L2: CD99 antigen 28.0 51 0.0011 29.4 2.6 31 226-256 114-145 (169)
144 PRK10907 intramembrane serine 27.9 2.6E+02 0.0057 26.4 7.3 38 212-253 183-220 (276)
145 PRK08383 putative monovalent c 27.9 4.1E+02 0.0089 23.5 8.1 38 210-250 6-50 (168)
146 PF09788 Tmemb_55A: Transmembr 27.6 1.4E+02 0.003 28.7 5.5 56 219-274 193-248 (256)
147 PRK02946 aceK bifunctional iso 27.5 1.4E+02 0.0031 31.5 6.0 97 98-204 6-122 (575)
148 PRK09110 flagellar motor prote 27.5 2.4E+02 0.0053 26.8 7.1 66 166-231 128-201 (283)
149 PRK10862 SoxR reducing system 27.3 1.2E+02 0.0027 26.1 4.7 33 214-250 92-125 (154)
150 TIGR03007 pepcterm_ChnLen poly 27.1 3.7E+02 0.0079 26.2 8.4 19 141-159 359-377 (498)
151 TIGR02833 spore_III_AB stage I 27.1 2.1E+02 0.0045 24.9 6.1 56 94-153 81-147 (170)
152 PF11660 DUF3262: Protein of u 27.0 2.6E+02 0.0057 21.6 6.1 42 221-262 16-60 (76)
153 TIGR00983 3a0801s02tim23 mitoc 26.7 3.1E+02 0.0066 23.9 7.0 21 201-221 36-56 (149)
154 PF02667 SCFA_trans: Short cha 26.6 1.6E+02 0.0036 30.1 6.1 70 170-256 72-157 (453)
155 PF04123 DUF373: Domain of unk 26.6 1.9E+02 0.0042 28.5 6.4 48 198-246 158-205 (344)
156 PRK14788 lipoprotein signal pe 26.6 1.2E+02 0.0026 27.6 4.7 17 254-270 87-103 (200)
157 PRK01406 gltX glutamyl-tRNA sy 26.6 4.1E+02 0.0089 26.9 8.9 88 100-187 353-465 (476)
158 PF10348 DUF2427: Domain of un 26.4 2.1E+02 0.0046 23.3 5.7 69 182-253 4-72 (105)
159 PRK08990 flagellar motor prote 26.2 2.4E+02 0.0052 26.3 6.7 106 137-245 75-190 (254)
160 PF03904 DUF334: Domain of unk 25.9 5.8E+02 0.013 24.3 10.3 39 121-159 66-104 (230)
161 CHL00118 atpG ATP synthase CF0 25.9 4E+02 0.0088 22.4 9.7 37 90-126 57-93 (156)
162 TIGR02758 TraA_TIGR type IV co 25.4 39 0.00086 27.9 1.3 31 212-242 57-87 (93)
163 PF11638 DnaA_N: DnaA N-termin 25.4 58 0.0013 23.1 2.0 23 99-127 1-23 (65)
164 PRK09545 znuA high-affinity zi 25.3 3E+02 0.0066 25.8 7.3 51 98-148 150-200 (311)
165 TIGR02926 AhaH ATP synthase ar 25.2 3.2E+02 0.0069 21.0 9.7 67 97-166 17-83 (85)
166 PHA01080 hypothetical protein 25.0 71 0.0015 25.9 2.6 25 224-249 47-72 (80)
167 COG4395 Uncharacterized protei 24.7 1.9E+02 0.0042 28.0 5.9 24 213-237 33-56 (281)
168 PRK13954 mscL large-conductanc 24.6 83 0.0018 26.8 3.1 25 214-238 3-27 (119)
169 PRK10209 acid-resistance membr 24.5 2.7E+02 0.0057 24.4 6.3 15 207-221 27-41 (190)
170 TIGR02359 thiW thiW protein. L 24.5 3.3E+02 0.0072 24.0 6.9 21 201-221 43-64 (160)
171 PF11460 DUF3007: Protein of u 24.4 1.4E+02 0.003 25.2 4.3 39 201-239 5-43 (104)
172 PRK05715 NADH:ubiquinone oxido 24.3 3.1E+02 0.0068 21.4 6.2 27 207-233 10-36 (100)
173 COG1556 Uncharacterized conser 24.2 86 0.0019 29.2 3.4 42 97-141 30-71 (218)
174 TIGR01219 Pmev_kin_ERG8 phosph 24.1 1.8E+02 0.0038 29.6 5.8 74 88-162 292-377 (454)
175 PF14357 DUF4404: Domain of un 24.0 2.3E+02 0.0049 22.4 5.3 74 103-188 3-83 (85)
176 KOG1265 Phospholipase C [Lipid 24.0 5E+02 0.011 29.7 9.4 89 98-187 1050-1139(1189)
177 PF13664 DUF4149: Domain of un 23.9 3.3E+02 0.0072 20.7 6.8 20 202-221 2-21 (101)
178 PF01925 TauE: Sulfite exporte 23.9 3.1E+02 0.0067 23.5 6.6 48 200-247 62-109 (240)
179 PRK01100 putative accessory ge 23.8 3.4E+02 0.0074 24.3 7.0 69 201-270 32-103 (210)
180 PRK14474 F0F1 ATP synthase sub 23.8 5.8E+02 0.013 23.5 10.6 28 90-117 50-77 (250)
181 PF11381 DUF3185: Protein of u 23.6 1.9E+02 0.0041 21.9 4.6 39 233-271 9-56 (59)
182 PRK13953 mscL large-conductanc 23.5 90 0.0019 26.8 3.1 25 214-238 3-27 (125)
183 PF11023 DUF2614: Protein of u 23.5 1.2E+02 0.0025 26.1 3.8 48 193-242 6-53 (114)
184 PF06120 Phage_HK97_TLTM: Tail 23.4 2.5E+02 0.0055 27.3 6.5 12 105-116 56-67 (301)
185 PF11780 DUF3318: Protein of u 23.4 1.2E+02 0.0025 26.4 3.9 23 234-256 106-128 (146)
186 TIGR00980 3a0801so1tim17 mitoc 23.3 4.5E+02 0.0099 23.5 7.6 24 197-221 12-35 (170)
187 PF13828 DUF4190: Domain of un 23.3 3.3E+02 0.0071 20.5 6.2 22 232-253 17-38 (62)
188 COG0711 AtpF F0F1-type ATP syn 23.1 4.8E+02 0.01 22.4 10.9 78 90-167 51-136 (161)
189 PF04888 SseC: Secretion syste 23.1 2.9E+02 0.0063 25.4 6.6 51 98-161 13-63 (306)
190 PF13315 DUF4085: Protein of u 23.0 4.9E+02 0.011 24.2 8.0 51 136-187 75-126 (208)
191 PF09677 TrbI_Ftype: Type-F co 23.0 2.3E+02 0.0051 23.5 5.4 36 102-138 38-73 (111)
192 PRK02935 hypothetical protein; 23.0 2.5E+02 0.0055 24.0 5.6 50 192-244 6-56 (110)
193 PF05433 Rick_17kDa_Anti: Glyc 23.0 1.5E+02 0.0033 20.8 3.7 26 212-237 8-36 (42)
194 PRK08382 putative monovalent c 22.9 2.4E+02 0.0051 25.8 5.9 56 177-237 7-67 (201)
195 KOG0423 Ubiquitin-protein liga 22.8 90 0.002 29.0 3.2 24 108-134 127-150 (223)
196 PRK09713 focB putative formate 22.7 81 0.0018 29.9 3.0 53 191-243 25-83 (282)
197 PF01277 Oleosin: Oleosin; In 22.6 80 0.0017 27.0 2.7 25 144-168 91-115 (118)
198 PRK00567 mscL large-conductanc 22.6 1.2E+02 0.0026 26.1 3.8 25 214-238 3-27 (134)
199 PF13536 EmrE: Multidrug resis 22.6 3E+02 0.0066 21.4 5.8 68 199-267 32-100 (113)
200 PF14256 YwiC: YwiC-like prote 22.5 4.4E+02 0.0095 22.2 7.0 61 204-269 62-122 (129)
201 TIGR02231 conserved hypothetic 22.5 2.8E+02 0.0061 27.6 6.8 17 97-113 95-111 (525)
202 PF05513 TraA: TraA; InterPro 22.5 1.1E+02 0.0025 26.2 3.5 31 212-243 85-115 (119)
203 PLN02601 beta-carotene hydroxy 22.4 1.4E+02 0.003 29.3 4.5 46 199-244 180-225 (303)
204 COG0172 SerS Seryl-tRNA synthe 22.2 82 0.0018 31.9 3.1 26 97-122 33-58 (429)
205 PF02529 PetG: Cytochrome B6-F 22.2 1.6E+02 0.0035 20.9 3.6 28 227-254 4-34 (37)
206 TIGR01069 mutS2 MutS2 family p 22.1 6E+02 0.013 27.4 9.5 60 103-162 531-590 (771)
207 PRK13955 mscL large-conductanc 22.1 1.3E+02 0.0027 26.1 3.8 25 214-238 3-27 (130)
208 PF07051 OCIA: Ovarian carcino 21.9 1.2E+02 0.0026 25.7 3.6 41 203-246 45-93 (111)
209 PF11127 DUF2892: Protein of u 21.9 1.8E+02 0.004 21.0 4.1 38 203-244 12-49 (66)
210 cd07595 BAR_RhoGAP_Rich-like T 21.6 4.8E+02 0.01 24.2 7.7 64 87-150 166-232 (244)
211 PF06409 NPIP: Nuclear pore co 21.5 6.5E+02 0.014 24.4 8.6 41 90-130 77-119 (265)
212 PRK14895 gltX glutamyl-tRNA sy 21.4 5.2E+02 0.011 26.9 8.6 89 99-187 390-503 (513)
213 PRK05686 fliG flagellar motor 21.4 1.8E+02 0.0039 27.7 5.0 44 123-166 282-329 (339)
214 PF03739 YjgP_YjgQ: Predicted 21.3 6E+02 0.013 23.1 8.2 41 214-254 289-331 (354)
215 PRK13952 mscL large-conductanc 21.2 1.4E+02 0.0029 26.1 3.8 26 213-238 4-29 (142)
216 PF00430 ATP-synt_B: ATP synth 21.0 4.1E+02 0.009 20.8 7.5 19 98-116 52-70 (132)
217 PHA02047 phage lambda Rz1-like 20.9 4.1E+02 0.0089 22.5 6.4 52 128-184 25-77 (101)
218 TIGR03766 conserved hypothetic 20.8 7.4E+02 0.016 24.7 9.3 59 212-276 420-481 (483)
219 CHL00015 ndhE NADH dehydrogena 20.8 4.1E+02 0.0088 21.1 6.2 37 208-244 10-49 (101)
220 cd01137 PsaA Metal binding pro 20.7 4.2E+02 0.0091 24.4 7.2 51 97-147 121-171 (287)
221 PF15556 Zwint: ZW10 interacto 20.7 5.2E+02 0.011 24.7 7.7 42 121-162 125-166 (252)
222 COG3671 Predicted membrane pro 20.7 1.7E+02 0.0036 25.5 4.2 71 172-244 3-89 (125)
223 TIGR00704 NaPi_cotrn_rel Na/Pi 20.6 5.2E+02 0.011 24.8 7.9 40 207-246 107-146 (307)
224 PRK05759 F0F1 ATP synthase sub 20.5 4.9E+02 0.011 21.4 9.7 67 93-159 52-126 (156)
225 PRK10209 acid-resistance membr 20.5 3.9E+02 0.0084 23.4 6.6 45 204-248 50-99 (190)
226 PF08285 DPM3: Dolichol-phosph 20.4 1.1E+02 0.0024 24.7 2.9 20 136-155 67-86 (91)
227 PF10112 Halogen_Hydrol: 5-bro 20.2 1.5E+02 0.0033 25.7 4.0 7 231-237 36-42 (199)
228 KOG0994 Extracellular matrix g 20.1 4.3E+02 0.0093 31.2 8.1 41 139-184 1459-1500(1758)
No 1
>KOG4267 consensus Predicted membrane protein [Function unknown]
Probab=99.86 E-value=3e-22 Score=164.31 Aligned_cols=76 Identities=32% Similarity=0.449 Sum_probs=73.2
Q ss_pred cccceechhHHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHhhhhhhcCCC-CchhHHH-HHHHHHHHHHHHHhh
Q 023714 198 LRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGK-TSPVALK-GQAGQRVVYFTIEIT 275 (278)
Q Consensus 198 mHDFclgipYG~Lva~GGiiGY~kaGS~~SL~aGl~~G~lLL~aGygSLk~~k~gk-~s~l~L~-~SavLAavm~~R~~~ 275 (278)
|||||+||+|++||++||||||+|+||++||++|+++|++ +||+|++.|++++ +++.++. ++++|+++|++|.++
T Consensus 1 m~~~~f~~~y~~Lv~~GGliGY~kkgSi~SL~aGl~~G~l---~g~~s~~l~~~~~~~~~~~l~~~s~~L~gvmg~R~~~ 77 (110)
T KOG4267|consen 1 MHDDCFGIPYAALVTVGGLIGYLKKGSIPSLAAGLLFGAL---AGYGSYLLSRDKKGGSLVALGGTSAALLGVMGQRFYR 77 (110)
T ss_pred CCchhhhhhHHHHHHhcceeeeeecCCcchHHHHHHHHHH---HHHHHHHhhcCCCcCchhHHHHHHHHHHHHHhhhhhc
Confidence 7999999999999999999999999999999999999988 9999999999999 9999999 699999999999876
Q ss_pred h
Q 023714 276 K 276 (278)
Q Consensus 276 ~ 276 (278)
.
T Consensus 78 s 78 (110)
T KOG4267|consen 78 S 78 (110)
T ss_pred c
Confidence 4
No 2
>PF03647 Tmemb_14: Transmembrane proteins 14C; InterPro: IPR005349 This family of short membrane proteins is as yet uncharacterised.; GO: 0016020 membrane; PDB: 2LOS_A 2LOO_A 2LOP_A.
Probab=99.62 E-value=5.3e-17 Score=128.34 Aligned_cols=74 Identities=35% Similarity=0.420 Sum_probs=65.2
Q ss_pred ceechhHHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHHHHHHHHHHHhhh
Q 023714 201 FYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFTIEITK 276 (278)
Q Consensus 201 FclgipYG~Lva~GGiiGY~kaGS~~SL~aGl~~G~lLL~aGygSLk~~k~gk~s~l~L~~SavLAavm~~R~~~~ 276 (278)
||++++||+++++||++||+|+||++||++|+++|++++++++.+. ++++....+++.+|++|+++|++|.++.
T Consensus 1 f~~~~~y~~ll~~GG~~Gy~k~gS~~SLiaG~~~G~ll~~~~~~~~--~~~~~~~~~~l~~s~~L~~~m~~R~~~t 74 (96)
T PF03647_consen 1 FHLAIPYGALLAVGGIMGYVKKGSKPSLIAGVGFGALLLYAGYLSL--TNQKWGSELALAISAVLAGVMGYRYIKT 74 (96)
T ss_dssp HCHCHHHHHHHHHHHHHHCTSS--CHCHHHHHHHHHHHHHHHCCCS---STHHCCHHHHHHHHHHHHCCTSSS-SS
T ss_pred CchhHHHHHHHHHhhHHHhHhccchhHHHHHHHHHHHHHHHHHHhh--ccCCccHHHHHHHHHHHHHHHHHHHHHc
Confidence 8999999999999999999999999999999999999999988876 6677788999999999999999997653
No 3
>COG5548 Small integral membrane protein [Function unknown]
Probab=98.77 E-value=1.8e-08 Score=82.55 Aligned_cols=72 Identities=22% Similarity=0.265 Sum_probs=57.0
Q ss_pred echhHHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHHHHHHHHHHHhhh
Q 023714 203 LGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFTIEITK 276 (278)
Q Consensus 203 lgipYG~Lva~GGiiGY~kaGS~~SL~aGl~~G~lLL~aGygSLk~~k~gk~s~l~L~~SavLAavm~~R~~~~ 276 (278)
-.|.|+.|..+||+|||++++|++||++|+++|+++..++|+-++-...| -..++.+++++-+.-+.|.++.
T Consensus 6 ~A~~ls~L~tiGGliGY~rk~S~vSL~sG~~~G~~~~~A~yL~~~g~~~G--l~~A~~~s~~Ll~~~~~R~~~s 77 (105)
T COG5548 6 AAIALSMLATIGGLIGYFRKNSQVSLLSGVFSGLLLFVAAYLQLQGQTWG--LILATVVSAALLVFFALRLVRS 77 (105)
T ss_pred HHHHHHHHHHhhhHHHHHhcCCchhhHHHHHHhHHHHHHHHHHHcCcccC--eehHHHHHHHHHHhcchhcccc
Confidence 35889999999999999999999999999999999888888744322222 2467778888877777776543
No 4
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=94.11 E-value=1.6 Score=38.27 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=14.6
Q ss_pred cccceechhHHHH------HHHhhHHHHHhc
Q 023714 198 LRDFYLGIPYGLL------LTLGGFISFMVT 222 (278)
Q Consensus 198 mHDFclgipYG~L------va~GGiiGY~ka 222 (278)
.-++|..+.++++ .++-|+++++..
T Consensus 75 ~~~~~~~~ld~~L~~~~if~~~~gi~~~f~~ 105 (206)
T PF06570_consen 75 NSNPWLMALDNSLLFFGIFSLLFGIMGFFSP 105 (206)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455655555544 445577777666
No 5
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=89.02 E-value=7.1 Score=39.79 Aligned_cols=71 Identities=24% Similarity=0.424 Sum_probs=42.9
Q ss_pred hHhHHhhcCc---hhhHHHhhcCCCCc---ccc-cccccccceech-----hHHHHHHHhhHHHHHhc------------
Q 023714 167 YLTEATENNP---EVKEIVETFTLPTE---DVK-EFSTLRDFYLGI-----PYGLLLTLGGFISFMVT------------ 222 (278)
Q Consensus 167 yl~~aaensp---~vK~i~et~~~~~e---~~~-~~skmHDFclgi-----pYG~Lva~GGiiGY~ka------------ 222 (278)
.-+..-+|++ +..+|++..+-|.= ||. -.+..+=+.||+ +||++++++|++-..+.
T Consensus 315 ~~Pt~l~N~~~~~pFE~lv~mYg~P~Y~EiDPT~~~ai~f~lfFGmM~gD~GyGLil~l~~~~l~~~~~k~~~~~~~~~~ 394 (646)
T PRK05771 315 EVPTKLKNPKFIKPFESLTEMYSLPKYNEIDPTPFLAIFFPLFFGMMLGDAGYGLLLLLIGLLLSFKLKKKSEGLKRLLK 394 (646)
T ss_pred CCCEEeeCCchhhhHHHHHHHcCCCCCCCcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3444555665 56688888777631 221 224455555664 68999999777544332
Q ss_pred ----CChhHHHHHHHHHHH
Q 023714 223 ----GSIPAIRFGVILGGT 237 (278)
Q Consensus 223 ----GS~~SL~aGl~~G~l 237 (278)
-++.|.++|++.|..
T Consensus 395 il~~~gi~sii~G~lyG~f 413 (646)
T PRK05771 395 ILIYLGISTIIWGLLTGSF 413 (646)
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 345666777777766
No 6
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=85.76 E-value=8 Score=34.00 Aligned_cols=68 Identities=15% Similarity=0.100 Sum_probs=57.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhhcCc
Q 023714 109 FREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNP 176 (278)
Q Consensus 109 fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e~gkeyl~~aaensp 176 (278)
.|++|.+++.--++...-...+|..+..||.+.|...++..++.+..--+.+-+++.+-+...++|--
T Consensus 56 ~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~~~~~~~~~~~~~~~~~~ 123 (155)
T PRK06569 56 LTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKNSINQNIEDINLAAKQFR 123 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777766777777777888899999999999999999999999999999999999999988544
No 7
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=83.71 E-value=2.4 Score=36.07 Aligned_cols=45 Identities=29% Similarity=0.247 Sum_probs=27.5
Q ss_pred chhHHHHHHHhhHHHHHhcCChhHH-------HHHHHHHHHHHHHHHhhhhh
Q 023714 204 GIPYGLLLTLGGFISFMVTGSIPAI-------RFGVILGGTLLALSIASLRS 248 (278)
Q Consensus 204 gipYG~Lva~GGiiGY~kaGS~~SL-------~aGl~~G~lLL~aGygSLk~ 248 (278)
.++-|++++++||++.+..+.-.+. ++.+..|++|+.+|+..+..
T Consensus 11 ~iilgilli~~gI~~Lv~~~~~l~~~~s~~lg~~~lAlg~vL~~~g~~~~~~ 62 (191)
T PF04156_consen 11 LIILGILLIASGIAALVLFISGLGALISFILGIALLALGVVLLSLGLLCLLS 62 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667889999999997777643222 22223466666666654433
No 8
>PRK10884 SH3 domain-containing protein; Provisional
Probab=83.12 E-value=14 Score=33.44 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHH
Q 023714 135 LKETAEQLKIEAEKARKDLTVV 156 (278)
Q Consensus 135 L~etse~L~iqa~ka~~~L~~~ 156 (278)
|++--++|+.|.+++++++..+
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l 158 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAA 158 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555443
No 9
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=82.36 E-value=10 Score=40.09 Aligned_cols=41 Identities=7% Similarity=0.138 Sum_probs=24.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023714 111 EQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARK 151 (278)
Q Consensus 111 eqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~ 151 (278)
.+...|+.+...-+.-+.+++...+++..++.+.|.+....
T Consensus 320 ~~l~~l~~v~~~nl~~~v~~~~~~~~~ip~~v~~qt~~~v~ 360 (806)
T PF05478_consen 320 SQLNNLEEVIKTNLSSIVQEGNSRFNDIPEKVQNQTSDVVP 360 (806)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 33445555555555666667777777777766666554443
No 10
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=81.04 E-value=9.3 Score=32.44 Aligned_cols=55 Identities=13% Similarity=0.022 Sum_probs=42.9
Q ss_pred hhHHHHHhcCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHHHHHHHHH
Q 023714 214 GGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFT 271 (278)
Q Consensus 214 GGiiGY~kaGS~~SL~aGl~~G~lLL~aGygSLk~~k~gk~s~l~L~~SavLAavm~~ 271 (278)
++.+.++..|+...++...+.|++ .++......|.+.+.....+.+++++++++.
T Consensus 114 ~~~fa~lfgg~~~~~~~a~i~g~~---~~~~~~~~~r~~~~~~~~~~~aa~~~~~~a~ 168 (193)
T PF06738_consen 114 SAAFALLFGGSWIDMIVAFILGLL---VGLLRQLLSRRRLNSFIQEFIAAFLASLLAA 168 (193)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH---HHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 345566689999999999999998 6666666778888888888888887777644
No 11
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=80.78 E-value=15 Score=33.05 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=24.2
Q ss_pred hcChhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 023714 92 KASAKESEEAWKQTLAAFREQAIKMQSVSQEAYEI 126 (278)
Q Consensus 92 ~~~~ees~E~Wkq~L~~fkeqa~kmq~~s~eaY~v 126 (278)
++.-||-|++=+..+++.+.+-...+.+ ..|||.
T Consensus 3 ~ASfeEIq~Arn~ll~~y~gd~~~~~~I-EaAYD~ 36 (194)
T PF11833_consen 3 DASFEEIQAARNRLLAQYAGDEKSREAI-EAAYDA 36 (194)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHH
Confidence 4556788888888888888776666655 346763
No 12
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=74.09 E-value=42 Score=30.17 Aligned_cols=77 Identities=22% Similarity=0.259 Sum_probs=51.7
Q ss_pred hhhhhhcChhhHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 023714 87 ESSEIKASAKESEEAWKQTLAAFREQAIKMQSVS-QEAYEIY-------SKRATAILKETAEQLKIEAEKARKDLTVVAK 158 (278)
Q Consensus 87 e~~~~~~~~ees~E~Wkq~L~~fkeqa~kmq~~s-~eaY~vy-------s~ka~~vL~etse~L~iqa~ka~~~L~~~ak 158 (278)
+-++.+.+.++.++.-++.|..-|.+|..|-.-. .++-..+ -+.+...+.++-+++..+.++|..+|..++.
T Consensus 95 ~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I~~ek~~A~~el~~~a~ 174 (204)
T PRK09174 95 QAARLKQEADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARIAAIKAKAMADVGSIAE 174 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667777788888888888887774322 2222222 2234446777778888888888888888888
Q ss_pred Hhhhh
Q 023714 159 ELSED 163 (278)
Q Consensus 159 e~~e~ 163 (278)
++..+
T Consensus 175 e~A~~ 179 (204)
T PRK09174 175 ETAAA 179 (204)
T ss_pred HHHHH
Confidence 88773
No 13
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=71.67 E-value=61 Score=27.36 Aligned_cols=74 Identities=30% Similarity=0.323 Sum_probs=40.8
Q ss_pred hhhhcChhhHHHHHHHHHHHHHHHHHHhhhh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 023714 89 SEIKASAKESEEAWKQTLAAFREQAIKMQSV--------SQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKEL 160 (278)
Q Consensus 89 ~~~~~~~ees~E~Wkq~L~~fkeqa~kmq~~--------s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~ 160 (278)
++.+.+.++-++.-++-|..-|++|.++..- -++.-+.--+.+...+.++-+++..+.++|+++|..-+..+
T Consensus 66 e~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~l~~~v~~l 145 (156)
T CHL00118 66 SEILAKANELTKQYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLLNEATKQLEAQKEKALKSLEEQVDTL 145 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555666666666666666555322 22333344445555666666666666666666666555444
Q ss_pred hh
Q 023714 161 SE 162 (278)
Q Consensus 161 ~e 162 (278)
..
T Consensus 146 A~ 147 (156)
T CHL00118 146 SD 147 (156)
T ss_pred HH
Confidence 43
No 14
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=71.47 E-value=11 Score=28.13 Aligned_cols=7 Identities=43% Similarity=0.510 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 023714 142 LKIEAEK 148 (278)
Q Consensus 142 L~iqa~k 148 (278)
++.+++.
T Consensus 53 ~k~~~~~ 59 (74)
T PF12732_consen 53 VKEKAEE 59 (74)
T ss_pred HHHHHHH
Confidence 3333333
No 15
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=71.31 E-value=46 Score=25.80 Aligned_cols=52 Identities=19% Similarity=0.224 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023714 99 EEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKAR 150 (278)
Q Consensus 99 ~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~ 150 (278)
++.=.++.+.+.+-+..+-+.+.+.++---+|+..-+.++.++++...++++
T Consensus 4 ~~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~ 55 (94)
T PF05957_consen 4 KAELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAR 55 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555666666666666655555555555554444444
No 16
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=69.70 E-value=9.9 Score=33.48 Aligned_cols=55 Identities=18% Similarity=0.204 Sum_probs=46.8
Q ss_pred ccceechhHHHHHHHhhHHHHHhcCC-------hhHHHHHHHHHHHHHHHHHhhhhhhcCCC
Q 023714 199 RDFYLGIPYGLLLTLGGFISFMVTGS-------IPAIRFGVILGGTLLALSIASLRSHKKGK 253 (278)
Q Consensus 199 HDFclgipYG~Lva~GGiiGY~kaGS-------~~SL~aGl~~G~lLL~aGygSLk~~k~gk 253 (278)
==++.|+|-++-+++.-+..|++.+. ++-++..+.||+.|+.++||.|-.+=|+.
T Consensus 65 m~~~~GiP~~lG~~~f~~~y~l~~~~~~dvP~~~~~~~S~~~Fg~gllGisYGilSaSWD~~ 126 (153)
T PF11947_consen 65 MAVFVGIPTALGVAVFVVFYYLKSRQIVDVPPWAVLLVSLVFFGLGLLGISYGILSASWDPE 126 (153)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHhccccccCchHHHHHHHHHHHHHHHhhhhhhcccccCCC
Confidence 34788999999999988999999876 56688899999999999999998877754
No 17
>PF15556 Zwint: ZW10 interactor
Probab=69.45 E-value=75 Score=30.16 Aligned_cols=68 Identities=31% Similarity=0.447 Sum_probs=45.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhh-----------------hHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhHHH
Q 023714 95 AKESEEAWKQTLAAFREQAIKMQSV-----------------SQEAYEIYSKR---ATAILKETAEQLKIEAEKARKDLT 154 (278)
Q Consensus 95 ~ees~E~Wkq~L~~fkeqa~kmq~~-----------------s~eaY~vys~k---a~~vL~etse~L~iqa~ka~~~L~ 154 (278)
.-++.|-||..=+++.+.+.-+-+. =++|++-|--| ||+-++-+..|-+.|-+|--..|.
T Consensus 61 ai~aKeQWKeLKAtYqehVEaIk~alt~aL~q~eEaqrK~~qLqeA~eqlqaKKqva~eK~r~AQkqwqlqQeK~LQ~La 140 (252)
T PF15556_consen 61 AIEAKEQWKELKATYQEHVEAIKSALTQALPQVEEAQRKRTQLQEALEQLQAKKQVAMEKLRAAQKQWQLQQEKHLQHLA 140 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999988888776655443 34555554322 566666666666666666666777
Q ss_pred HHHHHhhh
Q 023714 155 VVAKELSE 162 (278)
Q Consensus 155 ~~ake~~e 162 (278)
.+..||-+
T Consensus 141 e~sAEvre 148 (252)
T PF15556_consen 141 EVSAEVRE 148 (252)
T ss_pred HHHHHHHH
Confidence 77777755
No 18
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=68.04 E-value=58 Score=29.27 Aligned_cols=74 Identities=15% Similarity=0.189 Sum_probs=35.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhhcCc-hhhHHHh
Q 023714 110 REQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNP-EVKEIVE 183 (278)
Q Consensus 110 keqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e~gkeyl~~aaensp-~vK~i~e 183 (278)
|++|.+++.--.+...-=.++|..++.++.++.+...+..+..+..-+...-++.++.+...-+..- +|++++.
T Consensus 100 k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I~~ek~~A~~el~~~a~ 174 (204)
T PRK09174 100 KQEADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARIAAIKAKAMADVGSIAE 174 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444433344444444555555655555555555555555544444444444444444433333 4444443
No 19
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=68.03 E-value=75 Score=27.71 Aligned_cols=79 Identities=23% Similarity=0.232 Sum_probs=49.0
Q ss_pred hhhhhcChhhHHHHHHHHHHHHHHHHHHhhhhhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 023714 88 SSEIKASAKESEEAWKQTLAAFREQAIKMQSVSQ--------EAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKE 159 (278)
Q Consensus 88 ~~~~~~~~ees~E~Wkq~L~~fkeqa~kmq~~s~--------eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake 159 (278)
-++.+.+.++.++.....|..-|.++..+-.-.+ +.=+.-.+.+...+.++-+++..+.++|.++|...+.+
T Consensus 74 Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~~~~A~~e~~~~~aea~~~I~~~k~~a~~~l~~~a~~ 153 (181)
T PRK13454 74 AEELKQKAVEAEKAYNKALADARAEAQRIVAETRAEIQAELDVAIAKADAEIAAKAAESEKRIAEIRAGALESVEEVAKD 153 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556666677777777766665543332 22222334455666677777777788888888888888
Q ss_pred hhhhhhh
Q 023714 160 LSEDGKK 166 (278)
Q Consensus 160 ~~e~gke 166 (278)
++.+--+
T Consensus 154 lA~~i~~ 160 (181)
T PRK13454 154 TAEALVA 160 (181)
T ss_pred HHHHHHH
Confidence 8774433
No 20
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=65.97 E-value=19 Score=27.20 Aligned_cols=51 Identities=18% Similarity=0.235 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhhcCchhhHHHhhcCCCCcccccccc
Q 023714 141 QLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNPEVKEIVETFTLPTEDVKEFST 197 (278)
Q Consensus 141 ~L~iqa~ka~~~L~~~ake~~e~gkeyl~~aaensp~vK~i~et~~~~~e~~~~~sk 197 (278)
+|+.++|-.++-...+.+..-|.-. .. +.+.++++ |++....|. .|.+..+
T Consensus 8 ~L~R~~~~~~~~Y~~Ll~r~~e~~~---~~-~~~~~~~~-ivd~A~~P~-~P~~P~~ 58 (82)
T PF13807_consen 8 RLQRDVEIKRELYETLLQRYEEARL---SK-ASNVSNVR-IVDPAIVPD-KPVSPKR 58 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HH-hccCCCce-eccccccCC-CCCCCcH
Confidence 4555566555555555444333111 11 33444554 677766655 3544444
No 21
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=65.60 E-value=43 Score=31.84 Aligned_cols=52 Identities=12% Similarity=0.250 Sum_probs=23.7
Q ss_pred HHHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhhcCchhhHHHhhcCCCCccccccccc
Q 023714 141 QLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNPEVKEIVETFTLPTEDVKEFSTL 198 (278)
Q Consensus 141 ~L~iqa~ka~~~L~~~ake~~e~gkeyl~~aaensp~vK~i~et~~~~~e~~~~~skm 198 (278)
.|+.+.|-+++.+..+-+-.-|-. +..+.+ .+++. |++....|. .|.++.+.
T Consensus 346 ~L~r~~~~~~~~y~~ll~r~~e~~---l~~~~~-~~~~~-Vi~~a~~P~-~P~~P~~~ 397 (444)
T TIGR03017 346 VLQRDVENAQRAYDAAMQRYTQTR---IEAQSN-QTDIS-ILNPAVPPL-EPSSPRLL 397 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHhccC-CCceE-eeCCCCCCC-CCCCCchH
Confidence 455555656655555544443322 112222 23333 556655543 45444433
No 22
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=65.49 E-value=9 Score=33.25 Aligned_cols=63 Identities=33% Similarity=0.425 Sum_probs=38.4
Q ss_pred chhhHHHhhcCCCCcccccccccccceechhHHHHHHHhhHHH----HHhc--CChhHHHHHHH--HHHHHHHHHHh
Q 023714 176 PEVKEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFIS----FMVT--GSIPAIRFGVI--LGGTLLALSIA 244 (278)
Q Consensus 176 p~vK~i~et~~~~~e~~~~~skmHDFclgipYG~Lva~GGiiG----Y~ka--GS~~SL~aGl~--~G~lLL~aGyg 244 (278)
|.+-|++=|.+.+ -.+++-+| ..+|+|+.+++-|++. |... ||+.+..+=++ .|.+||++|.+
T Consensus 30 p~vsE~~lt~atg---g~e~s~Yr---ci~pfG~vili~GvvvT~vays~n~~~si~~~~G~vlLs~GLmlL~~~al 100 (129)
T PF15099_consen 30 PSVSESQLTAATG---GAEWSCYR---CIMPFGVVILIAGVVVTAVAYSFNSHGSIISIFGPVLLSLGLMLLACSAL 100 (129)
T ss_pred ecccHHHHhccCC---CCCceEEE---EEEEehHHHHHHhhHhheeeEeecCCcchhhhehHHHHHHHHHHHHhhhh
Confidence 3444544444332 24577777 7899999999999987 3333 77766544333 35555555544
No 23
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=64.83 E-value=6.7 Score=36.36 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=20.9
Q ss_pred HHhhHHHHHhcCChhHHHHHHHHHHH
Q 023714 212 TLGGFISFMVTGSIPAIRFGVILGGT 237 (278)
Q Consensus 212 a~GGiiGY~kaGS~~SL~aGl~~G~l 237 (278)
.+||++||+. |..+..++|+++|-+
T Consensus 7 i~g~~~G~~~-~g~~Ga~~G~~~Gh~ 31 (267)
T PRK09430 7 ILGFAFGFLF-GGFFGALLGLLIGHM 31 (267)
T ss_pred HHHHHHHHHH-hhHHHHHHHHHHHhH
Confidence 6899999999 558888888888876
No 24
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=63.84 E-value=14 Score=33.28 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=27.2
Q ss_pred HhhHHHHHhcCCh----hHHHHHHHHHHHHHHHHHhhhhhhcCCC
Q 023714 213 LGGFISFMVTGSI----PAIRFGVILGGTLLALSIASLRSHKKGK 253 (278)
Q Consensus 213 ~GGiiGY~kaGS~----~SL~aGl~~G~lLL~aGygSLk~~k~gk 253 (278)
.||++|.+..+.. ..=+.+++..++|..++|-+|+.|++++
T Consensus 12 ~ggl~g~LlG~k~~r~~~g~a~~~Gg~AalG~lA~~ayq~~q~~~ 56 (188)
T PF04391_consen 12 AGGLLGMLLGGKKGRKMGGGALKYGGLAALGGLAYKAYQNWQQNQ 56 (188)
T ss_pred HHHHHHHHhCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3899998876543 3334445555667777788888887654
No 25
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=63.83 E-value=1.1e+02 Score=27.57 Aligned_cols=20 Identities=35% Similarity=0.532 Sum_probs=12.8
Q ss_pred hhhHhHHhhcCc-hhhHHHhh
Q 023714 165 KKYLTEATENNP-EVKEIVET 184 (278)
Q Consensus 165 keyl~~aaensp-~vK~i~et 184 (278)
+..+..+.+++. .|.++|+.
T Consensus 300 ~~~l~~~v~~~~~~i~~~V~~ 320 (367)
T PF04286_consen 300 ENLLERIVESNHIDIGEIVEE 320 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445556666655 77777765
No 26
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=63.47 E-value=48 Score=23.10 Aligned_cols=64 Identities=19% Similarity=0.113 Sum_probs=40.9
Q ss_pred HHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHhhh-hhhcCCC--CchhHHHHHHHHHHHHHH
Q 023714 207 YGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASL-RSHKKGK--TSPVALKGQAGQRVVYFT 271 (278)
Q Consensus 207 YG~Lva~GGiiGY~kaGS~~SL~aGl~~G~lLL~aGygSL-k~~k~gk--~s~l~L~~SavLAavm~~ 271 (278)
-|.+..+.|++-+.......... ..++|..++..|...+ ..+++.+ ..+.+....+++..++|.
T Consensus 2 ~Gil~iv~Gi~~l~~p~~~~~~~-~~i~g~~~i~~Gi~~l~~~~~~~~~~~~~~~~l~~gi~~i~~Gi 68 (72)
T PF03729_consen 2 SGILFIVLGILLLFNPDASLAAL-AIILGIWLIISGIFQLISAFRRRKGSKGWWWSLLSGILSIVLGI 68 (72)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHH
Confidence 36777888888887776655544 5888888888888666 3333322 245555556665555543
No 27
>PF15508 NAAA-beta: beta subunit of N-acylethanolamine-hydrolyzing acid amidase
Probab=62.97 E-value=57 Score=25.60 Aligned_cols=30 Identities=13% Similarity=0.422 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 023714 97 ESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSK 129 (278)
Q Consensus 97 es~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ 129 (278)
..+|-|+|....||++ |+.+.+...++...
T Consensus 13 pP~eRw~~i~~~~k~~---i~~l~~~~~~~~~~ 42 (95)
T PF15508_consen 13 PPEERWVQIAKDYKDE---IRELIEVLKDLLQS 42 (95)
T ss_pred CHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3679999999999954 55555555555443
No 28
>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins. The function of this family is unknown.; GO: 0016020 membrane
Probab=62.83 E-value=53 Score=27.30 Aligned_cols=52 Identities=23% Similarity=0.345 Sum_probs=34.2
Q ss_pred eechhHHHHH-HHhhHHHHHhcCChhHHHH-HHHHHHHHHHHHHhhhhhhcCCC
Q 023714 202 YLGIPYGLLL-TLGGFISFMVTGSIPAIRF-GVILGGTLLALSIASLRSHKKGK 253 (278)
Q Consensus 202 clgipYG~Lv-a~GGiiGY~kaGS~~SL~a-Gl~~G~lLL~aGygSLk~~k~gk 253 (278)
.+|..||+++ ++|.+++.+..|..+-... -+..|..-+..|+...+.-++.+
T Consensus 48 l~Gp~~G~ivg~ig~~l~dll~g~~~~~~~~~i~~~~~g~i~g~~~~~~~~~~~ 101 (169)
T PF07155_consen 48 LFGPKYGAIVGAIGDLLSDLLSGYGPWAPFTMISKGLMGFIAGLIFRKKKKKKK 101 (169)
T ss_pred HHChHHHHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4677888888 5899999999987543333 34444444447777776645444
No 29
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=62.60 E-value=94 Score=26.18 Aligned_cols=76 Identities=11% Similarity=0.151 Sum_probs=48.5
Q ss_pred hhhhhhcChhhHHHHHHHHHHHHHHHHHHhhhhhHHH-HHHH-------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 023714 87 ESSEIKASAKESEEAWKQTLAAFREQAIKMQSVSQEA-YEIY-------SKRATAILKETAEQLKIEAEKARKDLTVVAK 158 (278)
Q Consensus 87 e~~~~~~~~ees~E~Wkq~L~~fkeqa~kmq~~s~ea-Y~vy-------s~ka~~vL~etse~L~iqa~ka~~~L~~~ak 158 (278)
+-++...+.++.++..++.|...+.++..+..-.++. -..+ -+.|..++.++..++..+.++|..+|..-+.
T Consensus 50 ~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~l~~~i~ 129 (164)
T PRK14471 50 SAEEARKEMQNLQADNERLLKEARAERDAILKEAREIKEKMIADAKEEAQVEGDKMIEQAKASIESEKNAAMAEIKNQVA 129 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566777788888888888877776544332 2222 3456667777777777777788777765544
Q ss_pred Hhhh
Q 023714 159 ELSE 162 (278)
Q Consensus 159 e~~e 162 (278)
.++.
T Consensus 130 ~la~ 133 (164)
T PRK14471 130 NLSV 133 (164)
T ss_pred HHHH
Confidence 4443
No 30
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=61.05 E-value=99 Score=25.92 Aligned_cols=65 Identities=22% Similarity=0.194 Sum_probs=41.9
Q ss_pred hhhhcChhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 023714 89 SEIKASAKESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVV 156 (278)
Q Consensus 89 ~~~~~~~ees~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ 156 (278)
++.+.+.++.++.+.+.|..-|.+|.++. .++=+.-.+.+..++.++..++..+.++|..+|..=
T Consensus 51 ~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~---~~a~~~A~~ea~~~~~~A~~~~~~~~~~a~~~l~~e 115 (141)
T PRK08476 51 KTNSSDVSEIEHEIETILKNAREEANKIR---QKAIAKAKEEAEKKIEAKKAELESKYEAFAKQLANQ 115 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566788889999999998887774 344444445555566666666666666666555443
No 31
>PRK13895 conjugal transfer protein TraM; Provisional
Probab=60.32 E-value=78 Score=28.06 Aligned_cols=39 Identities=23% Similarity=0.451 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHHHHHHH
Q 023714 96 KESEEAWKQTLAAFREQAIKMQSVSQEAYEIYS-KRATAILKET 138 (278)
Q Consensus 96 ees~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys-~ka~~vL~et 138 (278)
++++++=+.+|++|||+ |++++.+ |..++ +||-.+|.-+
T Consensus 38 ees~kAQq~mL~~Fkee---lE~iasr-W~~dak~KAEkiLnaa 77 (144)
T PRK13895 38 QDSAKAQQEMLDQFKEE---LESIASR-WGDDAKEKAERILNAA 77 (144)
T ss_pred HhhHHHHHHHHHHHHHH---HHHHHHH-HhHHHHHHHHHHHHHH
Confidence 45677778899999966 5666665 44444 5666666544
No 32
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=60.24 E-value=78 Score=24.50 Aligned_cols=7 Identities=29% Similarity=0.487 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 023714 104 QTLAAFR 110 (278)
Q Consensus 104 q~L~~fk 110 (278)
+-|++++
T Consensus 5 ~~l~~l~ 11 (94)
T PF05957_consen 5 AELEQLR 11 (94)
T ss_pred HHHHHHH
Confidence 3344444
No 33
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=59.99 E-value=75 Score=28.84 Aligned_cols=44 Identities=9% Similarity=0.101 Sum_probs=19.4
Q ss_pred HHhhHH---HHHhcCChhHHHHH-HHHHHHHHHHHHhhhhhhcCCCCchh
Q 023714 212 TLGGFI---SFMVTGSIPAIRFG-VILGGTLLALSIASLRSHKKGKTSPV 257 (278)
Q Consensus 212 a~GGii---GY~kaGS~~SL~aG-l~~G~lLL~aGygSLk~~k~gk~s~l 257 (278)
++||++ -|+.......+..- ++.+.+|++.|+.. .+-.+.+.+.
T Consensus 148 ~lg~liPllpy~~~~~~~~~~~s~~~~~~aL~~~G~~~--a~~~~~~~~~ 195 (218)
T cd02432 148 SVGALLPLLAILLAPAAWKVPVTIIATLLALALTGYVS--ARLGGASVLR 195 (218)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH--HHHCCCCHHH
Confidence 445543 46443232233333 33555555555553 3334444443
No 34
>TIGR03818 MotA1 flagellar motor stator protein MotA. This model represents one family of MotA proteins which are often not identified by the "transporter, MotA/TolQ/ExbB proton channel family" model, pfam01618.
Probab=59.14 E-value=79 Score=29.94 Aligned_cols=76 Identities=14% Similarity=0.232 Sum_probs=42.5
Q ss_pred hHhHHhhcC--c-hhhHHHhh-cCCCCcccccccccccceec--hhHHHHHHHhhHHHHHhc--CChhHHHHHHHHHHHH
Q 023714 167 YLTEATENN--P-EVKEIVET-FTLPTEDVKEFSTLRDFYLG--IPYGLLLTLGGFISFMVT--GSIPAIRFGVILGGTL 238 (278)
Q Consensus 167 yl~~aaens--p-~vK~i~et-~~~~~e~~~~~skmHDFclg--ipYG~Lva~GGiiGY~ka--GS~~SL~aGl~~G~lL 238 (278)
.|.+.++.. | .++|+.|+ .....+...+.+++-+-+-+ ..+|++-++-|+++-+.+ ++...|..|+ +++|
T Consensus 129 gl~l~vdG~~~~~~i~~iLe~ei~~~~~~~~~~~~v~~~~g~~aPa~GiiGtvlGLI~~l~~l~~dp~~lG~~i--A~Al 206 (282)
T TIGR03818 129 YLRLMVMGNMNPHELEALMEEEIETHHHELLKPAHALQKVADALPGFGIVAAVLGVVITMGSIDGPPEVLGVLI--AAAL 206 (282)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHHhcCCCHHHHHHHH--HHHH
Confidence 566676655 4 89999988 33434444444444333332 356777777777776666 2555444433 3333
Q ss_pred HHHHHh
Q 023714 239 LALSIA 244 (278)
Q Consensus 239 L~aGyg 244 (278)
+.--||
T Consensus 207 v~TlyG 212 (282)
T TIGR03818 207 VGTFLG 212 (282)
T ss_pred HHHHHH
Confidence 333343
No 35
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=58.99 E-value=1.1e+02 Score=26.00 Aligned_cols=77 Identities=14% Similarity=0.170 Sum_probs=47.8
Q ss_pred hhhhhhcChhhHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 023714 87 ESSEIKASAKESEEAWKQTLAAFREQAIKMQSVS-QEAYEIYSK-------RATAILKETAEQLKIEAEKARKDLTVVAK 158 (278)
Q Consensus 87 e~~~~~~~~ees~E~Wkq~L~~fkeqa~kmq~~s-~eaY~vys~-------ka~~vL~etse~L~iqa~ka~~~L~~~ak 158 (278)
+-++...+.++..+..++.|.+-+.+|..|-.-. .+|-.++.+ .|..++..+-+++..+.++|..+|...+.
T Consensus 52 ~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~e~~~a~~el~~e~~ 131 (167)
T PRK14475 52 EAQRLREEAQALLADVKAEREEAERQAAAMLAAAKADARRMEAEAKEKLEEQIKRRAEMAERKIAQAEAQAAADVKAAAV 131 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667777888888888888877764433 233333322 34456666766777777777777766655
Q ss_pred Hhhhh
Q 023714 159 ELSED 163 (278)
Q Consensus 159 e~~e~ 163 (278)
++..+
T Consensus 132 ~lAv~ 136 (167)
T PRK14475 132 DLAAQ 136 (167)
T ss_pred HHHHH
Confidence 55543
No 36
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=58.11 E-value=1.9e+02 Score=28.31 Aligned_cols=64 Identities=28% Similarity=0.443 Sum_probs=36.2
Q ss_pred hHHHHHHHHhhhhhhhhHhHHhhcCch----hhHHHhhcCCCCcccccccccccceechhHHHHHHHhhHHHHHhcCChh
Q 023714 151 KDLTVVAKELSEDGKKYLTEATENNPE----VKEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIP 226 (278)
Q Consensus 151 ~~L~~~ake~~e~gkeyl~~aaensp~----vK~i~et~~~~~e~~~~~skmHDFclgipYG~Lva~GGiiGY~kaGS~~ 226 (278)
+++..++.-+.++..+.+...-|-||+ -+-|+|| |+++.++.+|-=+.++.-|-+-
T Consensus 68 ~~~~~~~s~~~~~~~~~~~al~D~s~P~~~~~~~i~~t--------------------F~~ssIlLl~~Siss~iG~YiL 127 (299)
T PF05884_consen 68 NQLQSTASQFKPQSNEIVNALQDTSPPEKLSTSSIVET--------------------FSWSSILLLGFSISSFIGGYIL 127 (299)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhcCCCcCCCchhHHHH--------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666667777777777777743 2334444 4455555555555555555555
Q ss_pred HHHHHHHH
Q 023714 227 AIRFGVIL 234 (278)
Q Consensus 227 SL~aGl~~ 234 (278)
+..+|+++
T Consensus 128 apl~~~i~ 135 (299)
T PF05884_consen 128 APLFGIIF 135 (299)
T ss_pred HHHHHHHh
Confidence 55555444
No 37
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=57.54 E-value=1.1e+02 Score=32.36 Aligned_cols=74 Identities=22% Similarity=0.327 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhhcCchhhHHHhhcCCCCcccccccccccceech
Q 023714 126 IYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNPEVKEIVETFTLPTEDVKEFSTLRDFYLGI 205 (278)
Q Consensus 126 vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e~gkeyl~~aaensp~vK~i~et~~~~~e~~~~~skmHDFclgi 205 (278)
+-++-+-+=|++..|-.+...+.+++|+...|+|.-++=+. | |..+++.. |+|-
T Consensus 266 Li~~~s~e~lk~~~el~~klsea~~kd~ekKA~Eyee~vrK----A------------------EE~qK~mg----CvgK 319 (593)
T PRK15374 266 IVGKNTEESLQNDLALFNALQEGRQAEMEKKSAEFQEETRK----A------------------EETNRIMG----CIGK 319 (593)
T ss_pred HHhhhhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H------------------HHHHHHHh----HHHH
Confidence 44555555566666666666777777777777776653332 1 23444443 8999
Q ss_pred hHHHHHHHhhHHHHHhcCCh
Q 023714 206 PYGLLLTLGGFISFMVTGSI 225 (278)
Q Consensus 206 pYG~Lva~GGiiGY~kaGS~ 225 (278)
++|.++.+-|++.-+++|-.
T Consensus 320 IlG~vitaVsvvAAvfTGGA 339 (593)
T PRK15374 320 VLGALLTIVSVVAAVFTGGA 339 (593)
T ss_pred HHHHHHHHHHHHHHHHhccH
Confidence 99999999898888888654
No 38
>PRK06926 flagellar motor protein MotP; Reviewed
Probab=57.44 E-value=52 Score=31.13 Aligned_cols=93 Identities=19% Similarity=0.240 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHH--hh--hhh--hhhHhHHhhcCc--hhhHHHhh-cCCCCcccccccccccceec--
Q 023714 136 KETAEQLKIEAEKARKDLTVVAKE--LS--EDG--KKYLTEATENNP--EVKEIVET-FTLPTEDVKEFSTLRDFYLG-- 204 (278)
Q Consensus 136 ~etse~L~iqa~ka~~~L~~~ake--~~--e~g--keyl~~aaensp--~vK~i~et-~~~~~e~~~~~skmHDFclg-- 204 (278)
+|+-++|-.-+++||++ +.+|=| +- ++- +..|.++.+..+ .|+||.|+ .....+.....+++-+-+-+
T Consensus 80 ~~~i~~l~~la~~aRk~-GlLaLE~~~~~~~d~Fl~~gl~lvvDG~~~~~i~~iLe~ei~~~~~r~~~~~~v~~~~g~~A 158 (271)
T PRK06926 80 EELVQTFVSLSEKARRE-GLLSLEAELEEVKDPFIKKGLLLAIDGWEPETIRDIMMAEIAAMEERHRKGRRIFEKAGEYA 158 (271)
T ss_pred HHHHHHHHHHHHHHHhc-CHHHHHhhhcCCCChHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 34666677777888765 344422 21 122 455667776655 99999998 55555566667776666644
Q ss_pred hhHHHHHHHhhHHHHHhc-CChhHHH
Q 023714 205 IPYGLLLTLGGFISFMVT-GSIPAIR 229 (278)
Q Consensus 205 ipYG~Lva~GGiiGY~ka-GS~~SL~ 229 (278)
..||++=++-|++.-+.+ .+...|.
T Consensus 159 PafGmiGTviGLI~mL~~L~dp~~IG 184 (271)
T PRK06926 159 PAWGMIGTLVGLVLMLKNLNDPSTLG 184 (271)
T ss_pred hHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 468888888888887777 4444333
No 39
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=57.02 E-value=31 Score=29.98 Aligned_cols=41 Identities=24% Similarity=0.291 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023714 102 WKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLK 143 (278)
Q Consensus 102 Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~ 143 (278)
=|+|||+|-.|+. =+.++.+-++.+++|=..-|+++-++..
T Consensus 52 mK~Tld~F~~Q~~-~~~lte~q~e~lt~rF~~aL~~~L~~yq 92 (128)
T PRK13717 52 MKQTVDAFFDSAS-QKQLSEAQSKALSARFNTALEASLQAWQ 92 (128)
T ss_pred hHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999997 5789999999999998887777755444
No 40
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=56.65 E-value=24 Score=29.55 Aligned_cols=22 Identities=18% Similarity=0.519 Sum_probs=12.5
Q ss_pred CchhhHHHhhcCCCCccccccccc
Q 023714 175 NPEVKEIVETFTLPTEDVKEFSTL 198 (278)
Q Consensus 175 sp~vK~i~et~~~~~e~~~~~skm 198 (278)
.|.++|-+.++.. +|..+..++
T Consensus 16 ~~t~~~A~ksi~~--~df~~~~~i 37 (118)
T PF12597_consen 16 RPTLSDAVKSIKL--SDFRNVHKI 37 (118)
T ss_pred CCcHHHHHHhcCH--HHHhHHhcC
Confidence 3477777777763 244444443
No 41
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=56.27 E-value=1.4e+02 Score=26.22 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhh
Q 023714 131 ATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKK 166 (278)
Q Consensus 131 a~~vL~etse~L~iqa~ka~~~L~~~ake~~e~gke 166 (278)
|..++.++.++=+.+.+.++.+....++.+-++.++
T Consensus 72 A~~Ii~~A~~~a~~~~~ea~~eA~~ea~r~~~~A~~ 107 (154)
T PRK06568 72 RSQMIEESNEVTKKIIQEKTKEIEEFLEHKKSDAIQ 107 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444443333
No 42
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=56.05 E-value=53 Score=30.13 Aligned_cols=37 Identities=22% Similarity=0.423 Sum_probs=21.1
Q ss_pred hhHHHHHHHhhHHH---------HHhcCC-hhHHHHHHHHHHHHHHH
Q 023714 205 IPYGLLLTLGGFIS---------FMVTGS-IPAIRFGVILGGTLLAL 241 (278)
Q Consensus 205 ipYG~Lva~GGiiG---------Y~kaGS-~~SL~aGl~~G~lLL~a 241 (278)
..||++|++.+++. .+..++ ..++.+|+++|.+.+.+
T Consensus 16 ~~~G~~vl~ta~la~~s~~~a~~~~~~~~~~~ai~~glvwgl~I~~l 62 (301)
T PF14362_consen 16 AGIGAAVLFTALLAGLSGGYALYTVFGGPVWAAIPFGLVWGLVIFNL 62 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 34565555544433 233344 67777787777775544
No 43
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=55.93 E-value=34 Score=31.78 Aligned_cols=78 Identities=13% Similarity=0.021 Sum_probs=55.1
Q ss_pred cccceechhHHHHHHHhhHHHHHhcCCh--hHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHHHHHHH-HHHHh
Q 023714 198 LRDFYLGIPYGLLLTLGGFISFMVTGSI--PAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVY-FTIEI 274 (278)
Q Consensus 198 mHDFclgipYG~Lva~GGiiGY~kaGS~--~SL~aGl~~G~lLL~aGygSLk~~k~gk~s~l~L~~SavLAavm-~~R~~ 274 (278)
|.|.|+++.-.+++...+-.-|.|.++. .=+....+.-.+++.+.=.+|+.|.+|.+...++++-+++|..+ .||++
T Consensus 1 ~~~~~~~l~lTl~~y~~~~~l~~r~~~~~lnPvl~~~~~ii~~L~~~~i~Y~~Y~~g~~~l~~lLgPAtVALAvPLY~~~ 80 (226)
T TIGR00659 1 MFIIIVSLFLTLLVFFGAKKLYQRFKRPYLNPLLLTPLVLVGILLLVGIPYESYMLGGGVINDLLGPAVVALAIPLYKQL 80 (226)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhCCCHHHHHHhhHHHHHhhHHHHHHHHHHHHHhH
Confidence 5688888888888888888888888772 22333444444444555568999999999988888888877666 55554
Q ss_pred h
Q 023714 275 T 275 (278)
Q Consensus 275 ~ 275 (278)
+
T Consensus 81 ~ 81 (226)
T TIGR00659 81 P 81 (226)
T ss_pred H
Confidence 3
No 44
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=55.37 E-value=55 Score=31.71 Aligned_cols=57 Identities=23% Similarity=0.242 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhhcCchhhHHHhhcCCCC
Q 023714 131 ATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNPEVKEIVETFTLPT 189 (278)
Q Consensus 131 a~~vL~etse~L~iqa~ka~~~L~~~ake~~e~gkeyl~~aaensp~vK~i~et~~~~~ 189 (278)
.+.++.+........++||++++.+++.+...+|+--+++- ||..|++++.+....+
T Consensus 87 ~~~~~~~~~~~~i~~~~~a~~~ia~~~a~~i~dg~~IlTh~--~S~~v~~~l~~A~~~~ 143 (301)
T COG1184 87 RRQSLIKAAQEFIDRVEKAKERIAEIGAERIHDGDVILTHS--FSKTVLEVLKTAADRG 143 (301)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEec--CcHHHHHHHHHhhhcC
Confidence 56678888889999999999999999999999999877776 6669999998877654
No 45
>PF12822 DUF3816: Protein of unknown function (DUF3816); InterPro: IPR024529 Energy-coupling factor (ECF) transporters consist of a substrate-specific component and an energy-coupling module []. The substrate-binding component is a small integral membrane protein which captures specific substrates and forms an active transporter in the presence of the energy-coupling AT module. The energy coupling module is composed of an ATPase typical of the ATP binding cassette (ABC) superfamily and a characteristic transmembrane protein. Unlike the ABC transporters, an energy coupling module can be shared between multiple different substrate-binding components. This entry represents the substrate-specific component from a number of different ECF transporters.; PDB: 3P5N_A.
Probab=54.45 E-value=57 Score=26.81 Aligned_cols=24 Identities=33% Similarity=0.740 Sum_probs=17.4
Q ss_pred cceechhHHHHHHH-hhHHHHHhcC
Q 023714 200 DFYLGIPYGLLLTL-GGFISFMVTG 223 (278)
Q Consensus 200 DFclgipYG~Lva~-GGiiGY~kaG 223 (278)
=+++|..+|+++.+ ..+++++..+
T Consensus 39 ~~l~Gp~~G~~~g~i~~il~~l~~~ 63 (172)
T PF12822_consen 39 GFLLGPVWGALVGFISDILSFLIFG 63 (172)
T ss_dssp HTTS-HHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 36778888888876 8899999853
No 46
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=54.08 E-value=1e+02 Score=27.92 Aligned_cols=69 Identities=14% Similarity=0.092 Sum_probs=47.1
Q ss_pred cceechhHHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHH----hhhhhhcCCCCchhHHHHHHHHHHHHHH
Q 023714 200 DFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSI----ASLRSHKKGKTSPVALKGQAGQRVVYFT 271 (278)
Q Consensus 200 DFclgipYG~Lva~GGiiGY~kaGS~~SL~aGl~~G~lLL~aGy----gSLk~~k~gk~s~l~L~~SavLAavm~~ 271 (278)
+||..+.+|.+..+.|++=+...+ ..++..=..+|..+++.|. .+++..+++ .+.+...+.+++.+.++
T Consensus 74 ~~W~lll~Gil~i~~gil~~~~~~-~~~~~l~~lia~~~i~~GI~ri~~~~~~~~~~--G~~w~ii~Gvl~ii~g~ 146 (185)
T COG3247 74 SFWPLLLSGILSILLGILAGFNPG-LGALVLTYLIAIWFIASGILRIVVAFRLRSLP--GWWWMIISGVLGIIAGL 146 (185)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHccccC--CcHHHHHHHHHHHHHHH
Confidence 788888999988887777666666 5556666777777777765 344544444 56666666666666554
No 47
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=53.48 E-value=62 Score=33.05 Aligned_cols=60 Identities=18% Similarity=0.206 Sum_probs=41.1
Q ss_pred ccccccceechhHHHHH------HHhhHHHH-HhcCChhH-----HHHHHHHHHHHHHHHHhhhhhhcCCCC
Q 023714 195 FSTLRDFYLGIPYGLLL------TLGGFISF-MVTGSIPA-----IRFGVILGGTLLALSIASLRSHKKGKT 254 (278)
Q Consensus 195 ~skmHDFclgipYG~Lv------a~GGiiGY-~kaGS~~S-----L~aGl~~G~lLL~aGygSLk~~k~gk~ 254 (278)
.....-|.+|+.+|++. .++|+++| ..+||... +++|++.|.-++++++.+-+...+++.
T Consensus 287 ~~~~gaf~~G~l~~l~~~PC~~p~L~~~L~~aa~tg~~~~g~~~l~~~gLG~~~Plll~~~~~~~~lpk~g~ 358 (571)
T PRK00293 287 GSLGGVFVMGAISGLICSPCTTAPLSGALLYIAQSGDLLLGGLTLYLLALGMGLPLILITTFGNKLLPKSGP 358 (571)
T ss_pred CchHhHHHHHHHHHHHhCCCchHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcc
Confidence 34456799999999883 36789999 45677532 566777777888888876555444333
No 48
>PF12291 DUF3623: Protein of unknown function (DUF3623); InterPro: IPR017496 This uncharacterised protein family was identified, by the method of partial phylogenetic profiling, as having a matching phylogenetic distribution to that of the photosynthetic reaction centre of the alpha-proteobacterial type. It is nearly always encoded near other photosynthesis-related genes, including puhA.
Probab=53.32 E-value=80 Score=30.17 Aligned_cols=58 Identities=19% Similarity=0.352 Sum_probs=41.1
Q ss_pred cccceechhHHHHH--HHhhHHHHHhcCChh-HHHHHHHHHHHHHHHHHhhhhhhcCCCCc
Q 023714 198 LRDFYLGIPYGLLL--TLGGFISFMVTGSIP-AIRFGVILGGTLLALSIASLRSHKKGKTS 255 (278)
Q Consensus 198 mHDFclgipYG~Lv--a~GGiiGY~kaGS~~-SL~aGl~~G~lLL~aGygSLk~~k~gk~s 255 (278)
|-|+++-+.|++++ +.-|+|-|+-..--- .-...++.+..++++|+..+-...+-.+.
T Consensus 1 M~~~~~p~l~av~~WWfsTG~IL~l~~~~~rg~~~~s~~~~t~l~~~al~gl~~s~~d~s~ 61 (259)
T PF12291_consen 1 MSSYWLPALYAVFVWWFSTGAILWLVRLPDRGTFRWSMLLATPLLAAALWGLAASSHDTSV 61 (259)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHccCccH
Confidence 67889999999998 777777777642222 55666777777777887777666655444
No 49
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=53.04 E-value=1.3e+02 Score=24.68 Aligned_cols=76 Identities=16% Similarity=0.177 Sum_probs=46.4
Q ss_pred hhhhhhcChhhHHHHHHHHHHHHHHHHHHhhhhhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 023714 87 ESSEIKASAKESEEAWKQTLAAFREQAIKMQSVSQEAY--------EIYSKRATAILKETAEQLKIEAEKARKDLTVVAK 158 (278)
Q Consensus 87 e~~~~~~~~ees~E~Wkq~L~~fkeqa~kmq~~s~eaY--------~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ak 158 (278)
+-++...+.++..+.|++.|..-+.+|..+-.-.++-. +.-.+.+..++.++-+++..+.++|..+|..-+.
T Consensus 37 ~A~~~~~ea~~~~~e~~~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~~~~~~~a~~~i~~e~~~a~~~l~~~~~ 116 (147)
T TIGR01144 37 SAERAKKEAALAQKKAQVILKEAKDEAQEIIENANKRGSEILEEAKAEAREEREKIKAQARAEIEAEKEQAREELRKQVA 116 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555667788888888888888776654433322 2223345555666666666666777766665555
Q ss_pred Hhhh
Q 023714 159 ELSE 162 (278)
Q Consensus 159 e~~e 162 (278)
.+..
T Consensus 117 ~lA~ 120 (147)
T TIGR01144 117 DLSV 120 (147)
T ss_pred HHHH
Confidence 5544
No 50
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=52.81 E-value=7.6 Score=38.80 Aligned_cols=28 Identities=25% Similarity=0.282 Sum_probs=23.5
Q ss_pred ccceechhHHHHHHHhhHHHHHhcCChh
Q 023714 199 RDFYLGIPYGLLLTLGGFISFMVTGSIP 226 (278)
Q Consensus 199 HDFclgipYG~Lva~GGiiGY~kaGS~~ 226 (278)
+=+|+.+.+-+||++||++||+.+-+.+
T Consensus 302 ~~~c~~~~i~~lL~ig~~~gFv~AttKp 329 (387)
T PF12751_consen 302 FASCIYLSILLLLVIGFAIGFVFATTKP 329 (387)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcCcc
Confidence 4478888888899999999999987655
No 51
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=52.71 E-value=1.6e+02 Score=25.72 Aligned_cols=38 Identities=18% Similarity=0.166 Sum_probs=17.0
Q ss_pred hhhcChhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 023714 90 EIKASAKESEEAWKQTLAAFREQAIKMQSVSQEAYEIY 127 (278)
Q Consensus 90 ~~~~~~ees~E~Wkq~L~~fkeqa~kmq~~s~eaY~vy 127 (278)
.+..+-+++++.=.+.-+..++.=.+|+..-.||.++-
T Consensus 66 ~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii 103 (181)
T PRK13454 66 TITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIV 103 (181)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433333333333345555555555544
No 52
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=52.12 E-value=17 Score=27.72 Aligned_cols=25 Identities=16% Similarity=0.127 Sum_probs=13.2
Q ss_pred cccccccccccceechhHHHHHHHh
Q 023714 190 EDVKEFSTLRDFYLGIPYGLLLTLG 214 (278)
Q Consensus 190 e~~~~~skmHDFclgipYG~Lva~G 214 (278)
.++++...++.+.+.+..++++++.
T Consensus 55 ~~l~r~~~~~~~k~~~i~~~iv~~~ 79 (89)
T PF00957_consen 55 KKLKRKMWWRNYKLYIIIIIIVIII 79 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHhhhhhh
Confidence 3466666666665555444444433
No 53
>TIGR02744 TrbI_Ftype type-F conjugative transfer system protein TrbI. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=51.49 E-value=47 Score=28.08 Aligned_cols=41 Identities=27% Similarity=0.300 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023714 102 WKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLK 143 (278)
Q Consensus 102 Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~ 143 (278)
=|+|||+|-.|+. =+.+|.+-++.+.++=+..|.++-.+-+
T Consensus 39 mk~tld~F~~q~~-~~~lte~q~~~~~~rF~~~L~~~L~~yq 79 (112)
T TIGR02744 39 MKQTLDAFFDSAS-QKKLSEAQQKALLGRFNALLEAELQAWQ 79 (112)
T ss_pred cHHHHHHHHHHHh-hcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999997 5789999999999998888877755443
No 54
>PF14007 YtpI: YtpI-like protein
Probab=51.39 E-value=55 Score=26.55 Aligned_cols=47 Identities=28% Similarity=0.346 Sum_probs=34.4
Q ss_pred echhHHHHHHHhhHHHHHhcCChhHHHHHHHH---HHHHHHHHHhhhhhh
Q 023714 203 LGIPYGLLLTLGGFISFMVTGSIPAIRFGVIL---GGTLLALSIASLRSH 249 (278)
Q Consensus 203 lgipYG~Lva~GGiiGY~kaGS~~SL~aGl~~---G~lLL~aGygSLk~~ 249 (278)
..|.-|.++.+-|+.=++..+|+..++.|.+| |+.-+.+|+-+++-+
T Consensus 35 a~ialG~fl~~fgiNQ~~~~~st~~~iV~~ifl~lG~~n~~~G~r~y~hy 84 (89)
T PF14007_consen 35 ANIALGIFLILFGINQMFLFGSTVRLIVGAIFLVLGLFNLFAGIRAYRHY 84 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 35778999999999999999999999888765 444444444444433
No 55
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=51.21 E-value=28 Score=24.63 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=24.9
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhhh-hhhcCCC
Q 023714 222 TGSIPAIRFGVILGGTLLALSIASL-RSHKKGK 253 (278)
Q Consensus 222 aGS~~SL~aGl~~G~lLL~aGygSL-k~~k~gk 253 (278)
.+|+.+.++|++.|.+++.+-+.-| .-+|+++
T Consensus 2 p~s~IaIIv~V~vg~~iiii~~~~YaCcykk~~ 34 (38)
T PF02439_consen 2 PSSTIAIIVAVVVGMAIIIICMFYYACCYKKHR 34 (38)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3789999999999999998887654 3455554
No 56
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=51.13 E-value=1.5e+02 Score=25.93 Aligned_cols=60 Identities=25% Similarity=0.289 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhh
Q 023714 97 ESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSE 162 (278)
Q Consensus 97 es~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e 162 (278)
++.++=..+|+.||+ .|..++.+=-+---+||-.+|..+.-..+.+ +.+.+.+.++++.+
T Consensus 39 ~~~~aq~~~l~~fk~---elE~~~~~w~~dak~kAEkiL~aal~~ske~---m~~~l~e~~~~~~~ 98 (144)
T PF11657_consen 39 DSAKAQQEQLDQFKE---ELEEIASRWGEDAKEKAEKILNAALAASKEA---MNKILQESAQEIVE 98 (144)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 455566789999995 4566665554555667777777764433333 44456666666655
No 57
>PF13767 DUF4168: Domain of unknown function (DUF4168)
Probab=50.60 E-value=1.1e+02 Score=23.18 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHH
Q 023714 104 QTLAAFREQAIKMQSVSQEAYEIYSK 129 (278)
Q Consensus 104 q~L~~fkeqa~kmq~~s~eaY~vys~ 129 (278)
+-|++|-+-...|+.+.+++|..-.+
T Consensus 4 ~el~~fA~A~~~ie~ir~~~~~~l~~ 29 (78)
T PF13767_consen 4 AELDQFARAVLEIEPIRQEYQQELQA 29 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999987655
No 58
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=50.47 E-value=19 Score=30.54 Aligned_cols=12 Identities=8% Similarity=0.016 Sum_probs=5.9
Q ss_pred ccccccccceec
Q 023714 193 KEFSTLRDFYLG 204 (278)
Q Consensus 193 ~~~skmHDFclg 204 (278)
.+..-.|||--+
T Consensus 53 ~~~ql~h~fs~~ 64 (122)
T PF01102_consen 53 ERSQLVHRFSEP 64 (122)
T ss_dssp ---SSSSSSS-T
T ss_pred CCcccccCcccc
Confidence 455568888655
No 59
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=50.26 E-value=74 Score=26.14 Aligned_cols=49 Identities=20% Similarity=0.360 Sum_probs=33.2
Q ss_pred echhHHHHHHHhhHHHHHh---cCChh-HHHHHHHHHHHHHHHHHhhhhhhcC
Q 023714 203 LGIPYGLLLTLGGFISFMV---TGSIP-AIRFGVILGGTLLALSIASLRSHKK 251 (278)
Q Consensus 203 lgipYG~Lva~GGiiGY~k---aGS~~-SL~aGl~~G~lLL~aGygSLk~~k~ 251 (278)
.|+.+|+++.+-.++.|+. ..+.. .-..|.+...+.++.-+.+.+.+|+
T Consensus 2 ~g~i~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~R~ 54 (163)
T PF13858_consen 2 YGLIFGLILILFFLLSYLLGMHDIKYPSNSWLGILSMVITIIFIYFAIRRYRK 54 (163)
T ss_pred hHHHHHHHHHHHHHHHHHHHHccccccHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888888888877 43322 4455666666666666777888884
No 60
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=49.42 E-value=2e+02 Score=26.05 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=10.2
Q ss_pred hHHHHHHHH--HHHHHHHHHhhhh
Q 023714 226 PAIRFGVIL--GGTLLALSIASLR 247 (278)
Q Consensus 226 ~SL~aGl~~--G~lLL~aGygSLk 247 (278)
..+...+++ +.+|+.+|+..-+
T Consensus 170 ~~~~~s~~~~~~~~L~~~G~~~~~ 193 (225)
T cd02434 170 SVFALSILIFVAFTLFLLGSFKSK 193 (225)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443 5555555554333
No 61
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=49.01 E-value=1.1e+02 Score=27.37 Aligned_cols=58 Identities=19% Similarity=0.334 Sum_probs=34.5
Q ss_pred cccccceechhHHHHHHHhhHHHHHh----cCChhHHHHHHHHHHH---HHHHHHhhh--hhhcCCC
Q 023714 196 STLRDFYLGIPYGLLLTLGGFISFMV----TGSIPAIRFGVILGGT---LLALSIASL--RSHKKGK 253 (278)
Q Consensus 196 skmHDFclgipYG~Lva~GGiiGY~k----aGS~~SL~aGl~~G~l---LL~aGygSL--k~~k~gk 253 (278)
++..=+++.+.|++..-+|+++|+.. .+.....+.|++.|.. ++++++.-+ ..++++.
T Consensus 228 ~~~~~~~~~~~~sl~~piG~~ig~~~~~~~~~~~~~~~~~~~~a~aaG~~lyv~~~ell~~~~~~~~ 294 (317)
T PF02535_consen 228 SKRKALLLLLLFSLSTPIGALIGIAISNSGSSSSSDIVSGILLAFAAGTFLYVAFVELLPEEFHNKH 294 (317)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 33344558899999999999999999 3444444444444333 233333222 4555555
No 62
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=48.55 E-value=1.1e+02 Score=26.39 Aligned_cols=35 Identities=34% Similarity=0.413 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhh
Q 023714 133 AILKETAEQLKIEAEKARKDLTVVAKELSEDGKKY 167 (278)
Q Consensus 133 ~vL~etse~L~iqa~ka~~~L~~~ake~~e~gkey 167 (278)
.-+.+--++|+.+.++++.|+..+-|....--+||
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455566666666776666666666655544444
No 63
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=48.34 E-value=1.8e+02 Score=25.04 Aligned_cols=76 Identities=22% Similarity=0.265 Sum_probs=47.0
Q ss_pred hhhhhhcChhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 023714 87 ESSEIKASAKESEEAWKQTLAAFREQAIKMQSVSQEAYEIYS--------KRATAILKETAEQLKIEAEKARKDLTVVAK 158 (278)
Q Consensus 87 e~~~~~~~~ees~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys--------~ka~~vL~etse~L~iqa~ka~~~L~~~ak 158 (278)
+-++...+.++..+.+++.|...+.++..+..-.++.-+.-. +.|..++.++-.++..+.++|..+|..-+.
T Consensus 60 ~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~ek~~a~~~l~~ei~ 139 (173)
T PRK13453 60 DAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMIETAQSEINSQKERAIADINNQVS 139 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566777888999999999888887665554443222 234445555555666666666666655444
Q ss_pred Hhhh
Q 023714 159 ELSE 162 (278)
Q Consensus 159 e~~e 162 (278)
+++.
T Consensus 140 ~lA~ 143 (173)
T PRK13453 140 ELSV 143 (173)
T ss_pred HHHH
Confidence 4443
No 64
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=48.16 E-value=3e+02 Score=27.53 Aligned_cols=67 Identities=18% Similarity=0.229 Sum_probs=40.2
Q ss_pred hhhhhcChhhHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhHHH
Q 023714 88 SSEIKASAKESEEAWKQTLAAFREQAIKMQSVSQE-AYEIYS-------KRATAILKETAEQLKIEAEKARKDLT 154 (278)
Q Consensus 88 ~~~~~~~~ees~E~Wkq~L~~fkeqa~kmq~~s~e-aY~vys-------~ka~~vL~etse~L~iqa~ka~~~L~ 154 (278)
-++.+.+-++.++.+++.|...|.++..+-.-.++ |-.++. +.|..++.++.++++.+.++|..+|.
T Consensus 44 Ae~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~Ie~ek~~a~~elr 118 (445)
T PRK13428 44 SATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQVQLLRAQLTRQLR 118 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666778888888888888888776543333 222222 23444555566666666666655544
No 65
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=48.05 E-value=38 Score=29.18 Aligned_cols=51 Identities=18% Similarity=0.395 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhh
Q 023714 98 SEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSE 162 (278)
Q Consensus 98 s~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e 162 (278)
-+...+.-+++.|+| |.++|.+ |.|+|-|+ |+++.||+.++|....++...
T Consensus 41 ~~~~l~~Ei~~l~~E---~~~iS~q--DeFAkwaK---------l~Rk~~kl~~el~~~~~~~~~ 91 (161)
T PF04420_consen 41 EQRQLRKEILQLKRE---LNAISAQ--DEFAKWAK---------LNRKLDKLEEELEKLNKSLSS 91 (161)
T ss_dssp HHHHHHHHHHHHHHH---HTTS-TT--TSHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHcCCcH--HHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666654 4555554 47777754 799999999999988877765
No 66
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=47.60 E-value=20 Score=32.45 Aligned_cols=28 Identities=18% Similarity=0.150 Sum_probs=22.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHhhhhhhcC
Q 023714 224 SIPAIRFGVILGGTLLALSIASLRSHKK 251 (278)
Q Consensus 224 S~~SL~aGl~~G~lLL~aGygSLk~~k~ 251 (278)
+..|+|+|+++-.-|+++.|..||.+|.
T Consensus 159 D~~SFiGGIVL~LGv~aI~ff~~KF~ks 186 (186)
T PF05283_consen 159 DAASFIGGIVLTLGVLAIIFFLYKFCKS 186 (186)
T ss_pred chhhhhhHHHHHHHHHHHHHHHhhhccC
Confidence 4567788888888888999999998873
No 67
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=47.29 E-value=11 Score=36.92 Aligned_cols=21 Identities=24% Similarity=0.665 Sum_probs=18.0
Q ss_pred ceechhHHHHHHHhhHHHHHh
Q 023714 201 FYLGIPYGLLLTLGGFISFMV 221 (278)
Q Consensus 201 FclgipYG~Lva~GGiiGY~k 221 (278)
=..||.-+++|++||++||+-
T Consensus 368 aIaGIsvavvvvVgglvGfLc 388 (397)
T PF03302_consen 368 AIAGISVAVVVVVGGLVGFLC 388 (397)
T ss_pred ceeeeeehhHHHHHHHHHHHh
Confidence 357899999999999999973
No 68
>PF03203 MerC: MerC mercury resistance protein
Probab=46.41 E-value=1.3e+02 Score=24.27 Aligned_cols=7 Identities=0% Similarity=0.050 Sum_probs=2.7
Q ss_pred hcCCCCc
Q 023714 249 HKKGKTS 255 (278)
Q Consensus 249 ~k~gk~s 255 (278)
||+.++.
T Consensus 59 ~r~h~~~ 65 (116)
T PF03203_consen 59 YRRHRRW 65 (116)
T ss_pred Hhhccch
Confidence 3443333
No 69
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=45.86 E-value=1.6e+02 Score=24.38 Aligned_cols=10 Identities=10% Similarity=0.026 Sum_probs=4.2
Q ss_pred hhhcCCCCch
Q 023714 247 RSHKKGKTSP 256 (278)
Q Consensus 247 k~~k~gk~s~ 256 (278)
|+|+-|.+.+
T Consensus 111 Q~y~~~~~~~ 120 (145)
T PF09925_consen 111 QIYQTGADPW 120 (145)
T ss_pred hHhcCCCchH
Confidence 3344444443
No 70
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=45.03 E-value=1.3e+02 Score=28.33 Aligned_cols=47 Identities=19% Similarity=0.284 Sum_probs=35.0
Q ss_pred hhHHHHHHHhhHHHHHhc-----CChhHHHHHHHHHHHHHHHHHhhhhhhcC
Q 023714 205 IPYGLLLTLGGFISFMVT-----GSIPAIRFGVILGGTLLALSIASLRSHKK 251 (278)
Q Consensus 205 ipYG~Lva~GGiiGY~ka-----GS~~SL~aGl~~G~lLL~aGygSLk~~k~ 251 (278)
+.-|++..+-||.-|+-+ |=+.-++.|++-|.+.++.-|-.||..-|
T Consensus 103 l~lg~~aLlsgitaff~~nA~~~GlItlll~a~vgGfamy~my~y~yr~~ad 154 (226)
T COG4858 103 LFLGAMALLSGITAFFQKNAQVYGLITLLLTAVVGGFAMYIMYYYAYRMRAD 154 (226)
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Confidence 455677777899999876 55566777888888888888888877653
No 71
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=44.61 E-value=1.3e+02 Score=27.79 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=8.0
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 023714 225 IPAIRFGVILGGTLLALSI 243 (278)
Q Consensus 225 ~~SL~aGl~~G~lLL~aGy 243 (278)
......|++.|+++++.++
T Consensus 79 la~~~vG~~~gal~ia~~v 97 (306)
T PF04888_consen 79 LAAAGVGLAAGALMIADGV 97 (306)
T ss_pred HHHHHHhHHHHHHHHHHhH
Confidence 3333344444444444433
No 72
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=44.25 E-value=59 Score=25.99 Aligned_cols=42 Identities=24% Similarity=0.195 Sum_probs=26.5
Q ss_pred HHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCc
Q 023714 209 LLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTS 255 (278)
Q Consensus 209 ~Lva~GGiiGY~kaGS~~SL~aGl~~G~lLL~aGygSLk~~k~gk~s 255 (278)
+.+++|.++|++..- ...|+++|.++..++.+ ++..|+|+..
T Consensus 24 i~~~~~~~~Gi~~~~----~l~g~~lg~~~~~~~~~-lrr~K~g~~~ 65 (95)
T TIGR02762 24 LPGATLFGIGILSGK----ALIGLILGAAVMLIWKR-LRRIKGGEGE 65 (95)
T ss_pred HHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHH-HHHHHcCCCh
Confidence 445555666666532 24666777766534444 9999999866
No 73
>TIGR00984 3a0801s03tim44 mitochondrial import inner membrane, translocase subunit. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tim proteins.
Probab=42.88 E-value=1.2e+02 Score=30.24 Aligned_cols=50 Identities=20% Similarity=0.294 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHhhhh-----hHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHh
Q 023714 101 AWKQTLAAFREQAIKMQSV-----SQEAYEIY-------SKRATAILKETAEQLKIEAEKAR 150 (278)
Q Consensus 101 ~Wkq~L~~fkeqa~kmq~~-----s~eaY~vy-------s~ka~~vL~etse~L~iqa~ka~ 150 (278)
+||+-+.+|++++.||+.- -.|||+-- |..+...|+.|.+.+..-+++|.
T Consensus 12 E~~enik~l~~~~~~~~esea~k~ar~~y~~~~~~~~~~s~~~~~~l~~~~~~v~~~~~~~~ 73 (378)
T TIGR00984 12 ELQESIKQLQDRSGKLNESDALKKARKAYEKAESGTLKSSEVVGKTLGKLGDTMKKMAHKAW 73 (378)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 5999999999999999863 24677764 45567777777777766666554
No 74
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=42.87 E-value=1.1e+02 Score=32.23 Aligned_cols=57 Identities=32% Similarity=0.440 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHH---------HHHHHHHHHHHH--------------HHHHHHHHHHHHhhHHHHH
Q 023714 100 EAWKQTLAAFREQAIKMQSVSQEAYE---------IYSKRATAILKE--------------TAEQLKIEAEKARKDLTVV 156 (278)
Q Consensus 100 E~Wkq~L~~fkeqa~kmq~~s~eaY~---------vys~ka~~vL~e--------------tse~L~iqa~ka~~~L~~~ 156 (278)
|-=||.+.|+|+|.. ++-+-||+ |-=||-+.||.| .+|+||.|.|.|-+.|-.=
T Consensus 145 e~qkeLi~QLk~Ql~---dLE~~AYe~Geg~LPq~viLekQk~ilDeLr~Kl~lnl~i~~lsteelr~qVD~A~~q~VnP 221 (621)
T KOG3759|consen 145 ERQKELIKQLKEQLE---DLERTAYENGEGELPQTVILEKQKAILDELREKLELNLDIDKLSTEELRRQVDDALKQLVNP 221 (621)
T ss_pred chHHHHHHHHHHHHH---HHHHHHHhcCCCcCchHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHhCh
Confidence 345889999998865 55677887 456888888876 4678899999988777655
Q ss_pred HHH
Q 023714 157 AKE 159 (278)
Q Consensus 157 ake 159 (278)
+|+
T Consensus 222 ~k~ 224 (621)
T KOG3759|consen 222 FKE 224 (621)
T ss_pred HHH
Confidence 554
No 75
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=42.43 E-value=53 Score=34.73 Aligned_cols=51 Identities=22% Similarity=0.352 Sum_probs=28.9
Q ss_pred ceechhHHH------HHHHhhHHHHHhcCCh-----hHHHHHHHHHHHHHHHHHhhhhhhcC
Q 023714 201 FYLGIPYGL------LLTLGGFISFMVTGSI-----PAIRFGVILGGTLLALSIASLRSHKK 251 (278)
Q Consensus 201 FclgipYG~------Lva~GGiiGY~kaGS~-----~SL~aGl~~G~lLL~aGygSLk~~k~ 251 (278)
||+|+++|. ..++.|++||+.=-.. +++-.|++.|.+..+++...|+-+++
T Consensus 56 Faigia~glak~~kg~Aala~~v~yl~~~~~~~~~~~~~~~gvfgGIi~G~i~a~l~nkf~~ 117 (648)
T PRK10255 56 FAIGVASSWSKDSAGAAALAGAVGYFVLTKAMVTINPEINMGVLAGIITGLVGGAAYNRWSD 117 (648)
T ss_pred HHHHHHHHHhcCCchHhHHHHHHHHHHHHHHHHHHhhhhchhhhhhhHHHHHHHHHHHHhcc
Confidence 888888884 4667888888764332 23345555555533334444544443
No 76
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=41.97 E-value=2.1e+02 Score=24.07 Aligned_cols=74 Identities=19% Similarity=0.272 Sum_probs=45.3
Q ss_pred hhhhhcChhhHHHHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 023714 88 SSEIKASAKESEEAWKQTLAAFREQAIKMQSVSQE--------AYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKE 159 (278)
Q Consensus 88 ~~~~~~~~ees~E~Wkq~L~~fkeqa~kmq~~s~e--------aY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake 159 (278)
-++...+.++.++.+++.|..-+.+|..+-.-..+ .=+.-.+.|..++.++-+++..+.++|..+|..-+..
T Consensus 51 Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~a~~~L~~~i~~ 130 (164)
T PRK14473 51 AEKVREQLANAKRDYEAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRMLSELKSQIAD 130 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556677778888888888877776543332 2223344555666677777777777777666544333
Q ss_pred hh
Q 023714 160 LS 161 (278)
Q Consensus 160 ~~ 161 (278)
++
T Consensus 131 la 132 (164)
T PRK14473 131 LV 132 (164)
T ss_pred HH
Confidence 33
No 77
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=40.67 E-value=48 Score=27.12 Aligned_cols=46 Identities=24% Similarity=0.249 Sum_probs=25.0
Q ss_pred echhHHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHhhhhhhcCC
Q 023714 203 LGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKG 252 (278)
Q Consensus 203 lgipYG~Lva~GGiiGY~kaGS~~SL~aGl~~G~lLL~aGygSLk~~k~g 252 (278)
.++|-.++ ++|-++|+....+ -...+++|.+.++++|...+.+.+.
T Consensus 75 Y~lPll~l-i~g~~l~~~~~~~---e~~~~l~~l~~l~~~~~~~~~~~~~ 120 (135)
T PF04246_consen 75 YLLPLLAL-IAGAVLGSYLGGS---ELWAILGGLLGLALGFLILRLFDRR 120 (135)
T ss_pred HHHHHHHH-HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444 3444555555544 3444555555556777777776654
No 78
>PRK12482 flagellar motor protein MotA; Provisional
Probab=39.90 E-value=2.3e+02 Score=27.18 Aligned_cols=69 Identities=16% Similarity=0.071 Sum_probs=42.1
Q ss_pred Cc-hhhHHHhh-cCCCCcccccccccccceec--hhHHHHHHHhhHHHHHhcCCh-hHHHHHHHHHHHHHHHHHh
Q 023714 175 NP-EVKEIVET-FTLPTEDVKEFSTLRDFYLG--IPYGLLLTLGGFISFMVTGSI-PAIRFGVILGGTLLALSIA 244 (278)
Q Consensus 175 sp-~vK~i~et-~~~~~e~~~~~skmHDFclg--ipYG~Lva~GGiiGY~kaGS~-~SL~aGl~~G~lLL~aGyg 244 (278)
+| .|+||.|+ .....+.....+++-+-+-+ -.+|.+=++-|++.-+.+=+- ++.++. ..+.+|+.--||
T Consensus 139 d~~~i~~iLe~eie~~~~r~~~~a~v~~~~a~~aPa~GiiGtvlGLI~mL~~L~d~p~~IG~-~iAvALvtTfYG 212 (287)
T PRK12482 139 NQHELEGILDQELDAVEEELLQPSRSLQRIAEAMPGFGICAAVLGIIITMQSIDGSIAEIGL-KVAAALVGTFLG 212 (287)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHchHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHHHHHHH
Confidence 77 99999998 55555556666666666544 357887777888877777322 444332 333333444444
No 79
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=39.83 E-value=4.1e+02 Score=27.58 Aligned_cols=34 Identities=18% Similarity=0.061 Sum_probs=17.4
Q ss_pred HHHhhcCCCCcccccccccccceechhHHHHHHHh
Q 023714 180 EIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLG 214 (278)
Q Consensus 180 ~i~et~~~~~e~~~~~skmHDFclgipYG~Lva~G 214 (278)
.|++....|. .|.+..+..-.-+|+.-|+++.+|
T Consensus 414 ~vi~~A~~P~-~P~~P~~~~~l~~~~~~gl~lg~~ 447 (754)
T TIGR01005 414 RVASPASVPS-EPYFPKKGPIVGLAAVLGLLLGAI 447 (754)
T ss_pred EEeccCcCCC-CCCCCchHHHHHHHHHHHHHHHHH
Confidence 4667666654 455555554444444444444433
No 80
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=39.08 E-value=2.7e+02 Score=25.15 Aligned_cols=91 Identities=15% Similarity=0.233 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hHHHHHHHHhhhhhh---
Q 023714 97 ESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKAR--------KDLTVVAKELSEDGK--- 165 (278)
Q Consensus 97 es~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~--------~~L~~~ake~~e~gk--- 165 (278)
-+=+.|+++.+.+++.-.++..--++.|+...++...-|.+..++++....+.+ ..+.=.+++.|=+=.
T Consensus 99 ldp~n~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~~~~~~v~~H~af~Y~~~~yGl~~~~~~ 178 (264)
T cd01020 99 YDPETMSKVANALADALVKADPDNKKYYQANAKKFVASLKPLAAKIAELSAKYKGAPVAATEPVFDYLLDALGMKERTPK 178 (264)
T ss_pred cCHhHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEeCchHHHHHHHCCCcccCHH
Confidence 355678999999998888888888888888888877778888777777766543 245556666664311
Q ss_pred hhHhHH-hhcCc---hhhHHHhhcCC
Q 023714 166 KYLTEA-TENNP---EVKEIVETFTL 187 (278)
Q Consensus 166 eyl~~a-aensp---~vK~i~et~~~ 187 (278)
.|+... .|..| .+++|.+....
T Consensus 179 ~~~~~~~~~~~ps~~~l~~l~~~ik~ 204 (264)
T cd01020 179 GYTATTESETEPSPADIAAFQNAIKN 204 (264)
T ss_pred HHHhhhcCCCCCCHHHHHHHHHHHHh
Confidence 222222 25555 55555554443
No 81
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=39.02 E-value=2.5e+02 Score=24.16 Aligned_cols=76 Identities=16% Similarity=0.176 Sum_probs=39.3
Q ss_pred hhhhhhcChhhHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 023714 87 ESSEIKASAKESEEAWKQTLAAFREQAIKMQSVS-QEAYEIYSK-------RATAILKETAEQLKIEAEKARKDLTVVAK 158 (278)
Q Consensus 87 e~~~~~~~~ees~E~Wkq~L~~fkeqa~kmq~~s-~eaY~vys~-------ka~~vL~etse~L~iqa~ka~~~L~~~ak 158 (278)
+-++...+.++..+..++-|...+.++..+-.-. .+|.....+ .+..++.++-+++..+.++|.++|..-+.
T Consensus 69 ~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~~~~A~~~I~~ek~~a~~~l~~~i~ 148 (184)
T PRK13455 69 EARALREEAQTLLASYERKQREVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRLAAAEDQIASAEAAAVKAVRDRAV 148 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666777777777777776664432 223322211 12234444555555555566655554444
Q ss_pred Hhhh
Q 023714 159 ELSE 162 (278)
Q Consensus 159 e~~e 162 (278)
+++-
T Consensus 149 ~lA~ 152 (184)
T PRK13455 149 SVAV 152 (184)
T ss_pred HHHH
Confidence 4443
No 82
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.84 E-value=95 Score=33.26 Aligned_cols=93 Identities=20% Similarity=0.210 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhhcCchhh
Q 023714 102 WKQTLAAFREQAIKMQSVSQEAYEIYS-KR-ATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNPEVK 179 (278)
Q Consensus 102 Wkq~L~~fkeqa~kmq~~s~eaY~vys-~k-a~~vL~etse~L~iqa~ka~~~L~~~ake~~e~gkeyl~~aaensp~vK 179 (278)
-|..|++|-|++.||+...+--=.-.+ +| -..+|...+|+||..+++.+... .+.+ .++..-.=++-+.+
T Consensus 76 i~~~l~~v~e~v~km~~t~~~l~s~ls~~k~~t~dli~~t~~l~~e~~~le~r~-----kii~---~Fl~~fqLs~~E~~ 147 (655)
T KOG3758|consen 76 IKRRLDRVSEDVEKMANTCDKLKSNLSTSKATTQDLIQKTETLKEEAAQLELRK-----KIIN---AFLDNFQLSSEELD 147 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHH-----HHHH---HHHHhcccChHHHH
Confidence 456688888899999887654322222 22 23567777888888776655322 2222 22223333333566
Q ss_pred HHHhhcCCCCcc----ccccccccccee
Q 023714 180 EIVETFTLPTED----VKEFSTLRDFYL 203 (278)
Q Consensus 180 ~i~et~~~~~e~----~~~~skmHDFcl 203 (278)
.+.++ +...|+ +.+.-.|||.|=
T Consensus 148 ~L~~~-g~i~e~FF~vL~rvqeIh~~~~ 174 (655)
T KOG3758|consen 148 LLTES-GPIDEDFFKVLDRVQEIHDNCR 174 (655)
T ss_pred HHhcC-CcchHHHHHHHHHHHHHHHHHH
Confidence 66665 222333 367888999994
No 83
>PRK08124 flagellar motor protein MotA; Validated
Probab=38.37 E-value=1.4e+02 Score=27.72 Aligned_cols=68 Identities=13% Similarity=0.072 Sum_probs=37.2
Q ss_pred Cc-hhhHHHhhcCC-CCcccccccccccceech--hHHHHHHHhhHHHHHhc-CChhHHHHHHHHHHHHHHHHHh
Q 023714 175 NP-EVKEIVETFTL-PTEDVKEFSTLRDFYLGI--PYGLLLTLGGFISFMVT-GSIPAIRFGVILGGTLLALSIA 244 (278)
Q Consensus 175 sp-~vK~i~et~~~-~~e~~~~~skmHDFclgi--pYG~Lva~GGiiGY~ka-GS~~SL~aGl~~G~lLL~aGyg 244 (278)
+| +++++.|.-.. ..+...+...+-+-+-++ .+|++=++-|++.-+.+ ++ ++.+++.+ +.+|+.-.||
T Consensus 121 ~~~~i~~~le~~i~~~~~~~~~~~~~l~~ia~~AP~lGllGTVlGlI~~f~~l~~-p~~lg~gI-a~ALitT~yG 193 (263)
T PRK08124 121 SPEFIRDVLEEEIEAMEERHAAGAAIFTQAGTYAPTLGVLGAVIGLIAALGNLSD-IEKLGHAI-SAAFVATLLG 193 (263)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhccC-HHHHHHHH-HHHHHHHHHH
Confidence 55 88888887332 222334444444443333 37777778888887766 55 44444333 3333444444
No 84
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=38.26 E-value=2.6e+02 Score=24.68 Aligned_cols=33 Identities=15% Similarity=0.050 Sum_probs=15.6
Q ss_pred HHHHHhcC--ChhHHHHHHHHHHHHHHHHHhhhhh
Q 023714 216 FISFMVTG--SIPAIRFGVILGGTLLALSIASLRS 248 (278)
Q Consensus 216 iiGY~kaG--S~~SL~aGl~~G~lLL~aGygSLk~ 248 (278)
++.|+... +..-.++-++...+|.+.|+..-+.
T Consensus 150 llp~~~~~~~~~a~~~s~~~~~~~L~~~G~~~a~~ 184 (213)
T PF01988_consen 150 LLPYFFLPSVSEAFIASIAVTILALFILGYFKARI 184 (213)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666665 2233344444445555555543333
No 85
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=37.83 E-value=2.3e+02 Score=23.51 Aligned_cols=49 Identities=24% Similarity=0.375 Sum_probs=25.6
Q ss_pred echhHHHHHHHhhHHHHHhc--CChh-HHHHHHHHHHHHHHHHHhhhhhhcCC
Q 023714 203 LGIPYGLLLTLGGFISFMVT--GSIP-AIRFGVILGGTLLALSIASLRSHKKG 252 (278)
Q Consensus 203 lgipYG~Lva~GGiiGY~ka--GS~~-SL~aGl~~G~lLL~aGygSLk~~k~g 252 (278)
+-+..|++++..|++-|+-. .+++ ...++++++.+++ ...++.+.++++
T Consensus 35 ~l~~lGall~~~gii~fvA~nW~~i~~~~k~~~~~~~~~~-~~~~~~~~~~~~ 86 (145)
T PF09925_consen 35 ILLYLGALLLGLGIILFVAANWDDIPRLAKLGLLLALLLL-SYVGGFWLWRRR 86 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH-HHHHHHHHHhcc
Confidence 34455667777777766654 2222 2356666666544 334444444433
No 86
>PF01706 FliG_C: FliG C-terminal domain; InterPro: IPR023087 The flagellar motor switch in Escherichia coli and Salmonella typhimurium regulates the direction of flagellar rotation and hence controls swimming behaviour []. The switch is a complex apparatus that responds to signals transduced by the chemotaxis sensory signalling system during chemotactic behaviour []. CheY, the chemotaxis response regulator, is believed to act directly on the switch to induce tumbles in the swimming pattern, but no physical interactions of CheY and switch proteins have yet been demonstrated. The switch complex comprises at least three proteins - FliG, FliM and FliN. It has been shown that FliG interacts with FliM, FliM interacts with itself, and FliM interacts with FliN []. Several residues within the middle third of FliG appear to be strongly involved in the FliG-FliM interaction, with residues near the N- or C-termini being less important []. Such clustering suggests that FliG-FliM interaction plays a central role in switching. Analysis of the FliG, FliM and FliN sequences shows that none are especially hydrophobic or appear to be integral membrane proteins []. This result is consistent with other evidence suggesting that the proteins may be peripheral to the membrane, possibly mounted on the basal body M ring [, ]. FliG is present in about 25 copies per flagellum. This entry represents the C-terminal domain of FliG, the structure of which is known. This domain functions specifically in motor rotation [].; PDB: 3USY_B 3USW_A 3HJL_A 3AJC_A 1LKV_X 1QC7_B.
Probab=37.60 E-value=95 Score=24.71 Aligned_cols=52 Identities=29% Similarity=0.519 Sum_probs=37.7
Q ss_pred HHhhhhhHHH----HHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHhhhhhh
Q 023714 114 IKMQSVSQEA----YEIYSKRATAILKETAEQL----KIEAEKARKDLTVVAKELSEDGK 165 (278)
Q Consensus 114 ~kmq~~s~ea----Y~vys~ka~~vL~etse~L----~iqa~ka~~~L~~~ake~~e~gk 165 (278)
.-|.+.+.|. +.--|+|+...+++-.+.+ ..++++||.++-.+++++.++|+
T Consensus 47 ~ALkga~~e~~~~il~nms~r~a~~l~~e~~~~g~v~~~di~~Aq~~iv~~~r~l~~~G~ 106 (110)
T PF01706_consen 47 LALKGASEELREKILSNMSKRAAEMLREEMEALGPVRLSDIEEAQREIVEIVRRLEEEGE 106 (110)
T ss_dssp HHHCTS-HHHHHHHHTTS-HHHHHHHHHHHHHH-S--HHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHccCCHHHHHHHHHHcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCcC
Confidence 3344444443 3445788888888877775 56889999999999999999996
No 87
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=37.44 E-value=2.2e+02 Score=28.60 Aligned_cols=87 Identities=18% Similarity=0.347 Sum_probs=56.5
Q ss_pred HH-HHHHHHHHHHHHHhhhhhHHHHHHHH---------------HHHHHHHHHHHHHHHHH----HHHHhhHHHHHHHHh
Q 023714 101 AW-KQTLAAFREQAIKMQSVSQEAYEIYS---------------KRATAILKETAEQLKIE----AEKARKDLTVVAKEL 160 (278)
Q Consensus 101 ~W-kq~L~~fkeqa~kmq~~s~eaY~vys---------------~ka~~vL~etse~L~iq----a~ka~~~L~~~ake~ 160 (278)
.| +++++.+|+.+..++++...+.-.|. +.+..+|++..+.|+.. .|..+..+..++++.
T Consensus 344 ~~~~~~~~~~~~r~~~l~d~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~L~~l~~~L~~~~~~~~e~i~~~l~~iak~~ 423 (470)
T TIGR00464 344 EQLAELLLLFKERLKTLKEIAELIRLFFEDKKEVDEDAFKKHLKKNVKEVLEALKKKLQALEEWTADEVKSAIKQIAEEL 423 (470)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhCCCCccCHHHHHHhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 55 77888899988888888766533332 23456677777777642 566667777777877
Q ss_pred hhhhhhhHhH------HhhcCchhhHHHhhcCC
Q 023714 161 SEDGKKYLTE------ATENNPEVKEIVETFTL 187 (278)
Q Consensus 161 ~e~gkeyl~~------aaensp~vK~i~et~~~ 187 (278)
|-++++...- -..++|++-++++.++-
T Consensus 424 g~k~k~lf~pLR~ALtG~~~GP~L~~~i~lLGk 456 (470)
T TIGR00464 424 GLKGKKVFMPLRLALTGKGHGPDLAQILELIGK 456 (470)
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHhCH
Confidence 7777764332 23566677666666543
No 88
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=37.36 E-value=2.6e+02 Score=23.86 Aligned_cols=70 Identities=20% Similarity=0.163 Sum_probs=38.5
Q ss_pred hcChhhHHHHHHHHHHHHHHHHHHhhhhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 023714 92 KASAKESEEAWKQTLAAFREQAIKMQSVS--------QEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELS 161 (278)
Q Consensus 92 ~~~~ees~E~Wkq~L~~fkeqa~kmq~~s--------~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~ 161 (278)
..+.++..+.-++-|...+.+|..+-.-. .++-+.--+.|..++.++.+++..+.++|..+|..-+..++
T Consensus 65 ~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~~e~~~a~~~l~~~i~~lA 142 (175)
T PRK14472 65 KDEAEAILRKNRELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQEKRRALDVLRNEVADLA 142 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555566666666655554332 23333334455566677777777777777766655444443
No 89
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=37.20 E-value=4.5e+02 Score=26.50 Aligned_cols=50 Identities=18% Similarity=0.313 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhhcCchhhHHHhhcC
Q 023714 130 RATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNPEVKEIVETFT 186 (278)
Q Consensus 130 ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e~gkeyl~~aaensp~vK~i~et~~ 186 (278)
|-.+.|-|.+|--+-.....|.+|..+..-+ +|. .-|-.-+|-|++|++-
T Consensus 262 rLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~-----~Yq--s~eRaRdi~E~~Es~q 311 (395)
T PF10267_consen 262 RLEEQLNDLTELHQNEIYNLKQELASMEEKM-----AYQ--SYERARDIWEVMESCQ 311 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-----HHH--HHHHHhHHHHHHHHHH
Confidence 3445566666666666666677776654433 342 2333345556666553
No 90
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.33 E-value=1.6e+02 Score=31.76 Aligned_cols=107 Identities=21% Similarity=0.276 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhhcCchhhH
Q 023714 101 AWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNPEVKE 180 (278)
Q Consensus 101 ~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e~gkeyl~~aaensp~vK~ 180 (278)
-|+-...+|++.+ |+|++|.- ++.--++|...+...++++..+..|+++ .|-+. .---|.|||
T Consensus 429 le~~~v~~~~~~V--------Qe~~~Y~g-----~ekk~n~LE~e~kn~~~ev~kls~ei~~--ie~~l--~~~~~~vke 491 (758)
T COG4694 429 LEKFLVNEFKSDV--------QEYNKYCG-----LEKKINNLEKEIKNNQEEVKKLSNEIKE--IEKFL--VSIKPIVKE 491 (758)
T ss_pred HHHHHHHHHHHHH--------HHHHHHHH-----HHHHHhHHHHHHHhhHHHHHHHHHHHHH--HHHHH--hhchhhHHH
Confidence 3666666777554 57888842 1124677777777888888888888887 44322 333468999
Q ss_pred HHhhcCCCCcccccccccccceech-----hHHHHHHHhhHHHHHhc-CChhHHHHH
Q 023714 181 IVETFTLPTEDVKEFSTLRDFYLGI-----PYGLLLTLGGFISFMVT-GSIPAIRFG 231 (278)
Q Consensus 181 i~et~~~~~e~~~~~skmHDFclgi-----pYG~Lva~GGiiGY~ka-GS~~SL~aG 231 (278)
|-.|+.. .-..-.||+.+ .|+..-=.|-..|=..+ |.+..+.+-
T Consensus 492 ~nq~l~~-------g~gra~~~L~~~~kek~y~i~r~~g~~~gn~LSEGekt~iaf~ 541 (758)
T COG4694 492 INQTLLK-------GYGRANFSLACTEKEKFYRIQREDGQLVGNTLSEGEKTFIAFL 541 (758)
T ss_pred HHHHHHh-------hcchheeeeeeccchhhheeecccCccccccccccchhHHHHH
Confidence 9877433 22223455543 45555555555565333 666655443
No 91
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=36.25 E-value=2.8e+02 Score=23.88 Aligned_cols=12 Identities=17% Similarity=0.348 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 023714 103 KQTLAAFREQAI 114 (278)
Q Consensus 103 kq~L~~fkeqa~ 114 (278)
.+.++..+++-.
T Consensus 78 ~~~l~e~e~~L~ 89 (184)
T PRK13455 78 QTLLASYERKQR 89 (184)
T ss_pred HHHHHHHHHHHH
Confidence 334444443333
No 92
>TIGR01558 sm_term_P27 phage terminase, small subunit, putative, P27 family. Members tend to be adjacent to the phage terminase large subunit gene.
Probab=36.04 E-value=2.3e+02 Score=22.75 Aligned_cols=17 Identities=24% Similarity=0.657 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHHHHHH
Q 023714 95 AKESEEAWKQTLAAFRE 111 (278)
Q Consensus 95 ~ees~E~Wkq~L~~fke 111 (278)
++.++..|+.+...+++
T Consensus 7 ~~~ak~~w~ri~~~L~~ 23 (116)
T TIGR01558 7 GKEGKDEWKRVAPELKG 23 (116)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 35789999999999885
No 93
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=35.82 E-value=2.5e+02 Score=25.81 Aligned_cols=63 Identities=22% Similarity=0.372 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhh
Q 023714 99 EEAWKQTLAAFREQAIKMQ-SVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSE 162 (278)
Q Consensus 99 ~E~Wkq~L~~fkeqa~kmq-~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e 162 (278)
-|+||..|+.|++|-..|. .+-.|-=-||.-- -+-=|+-.|||+-.-+.-|.+|.++-.-+++
T Consensus 107 lq~mr~~ln~FR~qm~dlE~~l~~QQalvy~hM-SeeER~EaeQLQsLR~avRqElqELE~QL~D 170 (179)
T PF14723_consen 107 LQQMRRSLNSFREQMMDLELHLMRQQALVYRHM-SEEEREEAEQLQSLRSAVRQELQELEFQLED 170 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999876542 2222222233211 1111344566666666666666666655555
No 94
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=35.78 E-value=3.1e+02 Score=24.23 Aligned_cols=19 Identities=37% Similarity=0.620 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023714 122 EAYEIYSKRATAILKETAEQL 142 (278)
Q Consensus 122 eaY~vys~ka~~vL~etse~L 142 (278)
|-.++|.+| .+-.+..+++
T Consensus 84 el~~iy~~~--Gl~~~~a~~i 102 (213)
T PF01988_consen 84 ELVEIYRAK--GLSEEDAEEI 102 (213)
T ss_pred HHHHHHHHC--CCCHHHHHHH
Confidence 445566555 3444444443
No 95
>PF01226 Form_Nir_trans: Formate/nitrite transporter; InterPro: IPR000292 Proteins in this entry belong to the Formate-Nitrite Transporter (FNT) family (TC 2.A.44). The prokaryotic proteins of the FNT family probably function in the transport of the structurally related compounds, formate and nitrite. The homologous yeast protein may function as a short chain aliphatic carboxylate H+ symporter, transporting formate, acetate and propionate, and functioning primarily as an acetate uptake permease.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3Q7K_H 3KLY_E 3KLZ_A 3TDX_C 3TE2_B 3TDS_B 3TDR_E 3TDO_C 3TE1_B 3TDP_C ....
Probab=35.77 E-value=20 Score=32.93 Aligned_cols=65 Identities=22% Similarity=0.334 Sum_probs=45.3
Q ss_pred HHHhhcCCCCcccccccccccceechhHHHHHHHhhHHHHHhcCC-------hhHHHHHHHHHHHHHHHHHh
Q 023714 180 EIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGS-------IPAIRFGVILGGTLLALSIA 244 (278)
Q Consensus 180 ~i~et~~~~~e~~~~~skmHDFclgipYG~Lva~GGiiGY~kaGS-------~~SL~aGl~~G~lLL~aGyg 244 (278)
|++|.....+++-.+...+.-|+.++.=|.++.+|++......+. ...+++|++|+..|+..-++
T Consensus 3 e~~~~~~~~g~~k~~~~~~~~~~~~~lAG~~ig~g~~~~~~v~~~~~~~~~g~~~l~~g~~F~~Gl~lIv~~ 74 (250)
T PF01226_consen 3 EIVEAIVEAGEKKANRPPSKLFLRGILAGAFIGFGALLSLVVAAGFGAENPGLAKLVGGLVFPIGLVLIVFL 74 (250)
T ss_dssp HCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHHHHHHHHh
Confidence 444443333333344556667889999999999999988887755 57788888888877665544
No 96
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=35.65 E-value=3.3e+02 Score=24.53 Aligned_cols=75 Identities=24% Similarity=0.367 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHH------HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHhhh---------
Q 023714 100 EAWKQTLAAFRE------QAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKAR--KDLTVVAKELSE--------- 162 (278)
Q Consensus 100 E~Wkq~L~~fke------qa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~--~~L~~~ake~~e--------- 162 (278)
+...+.|+.+++ +-..-|+|+.|-+|+=++- ..|+..-++|+...+||+ +|+-.+-.++.+
T Consensus 105 ~~~~~~l~~l~~~g~v~~~~~~~~DvT~~y~D~~arl--~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~ 182 (262)
T PF14257_consen 105 DKFDSFLDELSELGKVTSRNISSEDVTEQYVDLEARL--KNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLE 182 (262)
T ss_pred HHHHHHHHHHhccCceeeeeccccchHHHHHHHHHHH--HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555553 3345688999988876643 456666666777666664 344444455432
Q ss_pred hhhhhHhHHhhcCc
Q 023714 163 DGKKYLTEATENNP 176 (278)
Q Consensus 163 ~gkeyl~~aaensp 176 (278)
.-+.||...++-|.
T Consensus 183 ~~~~~l~~~v~~st 196 (262)
T PF14257_consen 183 GQLKYLDDRVDYST 196 (262)
T ss_pred HHHHHHHHhhceEE
Confidence 11345655555555
No 97
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=35.57 E-value=67 Score=24.71 Aligned_cols=44 Identities=23% Similarity=0.369 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 023714 96 KESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQ 141 (278)
Q Consensus 96 ees~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~ 141 (278)
+|+.|.|-+ +.|++...++..++.+-++...++-..|..+....
T Consensus 4 ~e~~e~yg~--~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~ 47 (118)
T PF07739_consen 4 EEARERYGD--EAYAESEERLASLSKEEWQELQKEWDELFAELAAL 47 (118)
T ss_dssp -HHHHH-------------------------TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCh--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 568888888 88888888888888888888877766665554333
No 98
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=35.50 E-value=1.6e+02 Score=25.61 Aligned_cols=56 Identities=21% Similarity=0.340 Sum_probs=35.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhhHH
Q 023714 94 SAKESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRA-----------TAILKETAEQLKIEAEKARKDL 153 (278)
Q Consensus 94 ~~ees~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka-----------~~vL~etse~L~iqa~ka~~~L 153 (278)
+.+...|+|++.++..+.+ -.++++-+++-.+=. ...+.-+-|+|+.|.++|+++-
T Consensus 82 ~g~s~~eaw~~~~~~~~~~----~~L~~~d~eiL~~lg~~LG~~D~e~Q~k~i~L~~e~L~~~~~~a~~~~ 148 (171)
T PRK08307 82 EGETAYEAWEKALEENWKN----TALKKEDIEILLQFGKTLGQSDREGQQKHIRLALEHLEREEEEAEEEQ 148 (171)
T ss_pred CCCCHHHHHHHHHHHhhhc----cCCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477999999999887633 345555555433211 1345667777777777777543
No 99
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=35.02 E-value=1.5e+02 Score=27.29 Aligned_cols=51 Identities=18% Similarity=0.100 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023714 97 ESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAE 147 (278)
Q Consensus 97 es~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ 147 (278)
-+=..|+++.+..++.-+++.--.++.|+.+.++-..-|++.-++++.+..
T Consensus 125 ldp~n~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~~~ 175 (286)
T cd01019 125 LSPENAAEVAQAVAEKLSALDPDNAATYAANLEAFNARLAELDATIKERLA 175 (286)
T ss_pred CCHHHHHHHHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345678999999999999999999999988888877777776666665543
No 100
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=34.47 E-value=2.1e+02 Score=25.56 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=16.4
Q ss_pred ccccceechhHHHHHHHhhHHHHHhc
Q 023714 197 TLRDFYLGIPYGLLLTLGGFISFMVT 222 (278)
Q Consensus 197 kmHDFclgipYG~Lva~GGiiGY~ka 222 (278)
++-|+ +|-.|..=++.||+.+|++.
T Consensus 14 ri~dd-~G~af~~G~vgG~~~~~~~G 38 (164)
T PTZ00236 14 RIIED-MGGAFSMGCIGGFIWHFLKG 38 (164)
T ss_pred HHHHh-ccHHHHHHHHHHHHHHHHHH
Confidence 34444 45677777777888777763
No 101
>PF14023 DUF4239: Protein of unknown function (DUF4239)
Probab=34.33 E-value=3.1e+02 Score=23.71 Aligned_cols=18 Identities=11% Similarity=0.281 Sum_probs=10.6
Q ss_pred HHHHHhhHHHHHHHHhhh
Q 023714 145 EAEKARKDLTVVAKELSE 162 (278)
Q Consensus 145 qa~ka~~~L~~~ake~~e 162 (278)
+.++.|..|..-+..+.+
T Consensus 53 ~~~~~r~~l~~Y~~~vv~ 70 (209)
T PF14023_consen 53 DRDEIRALLRAYTRAVVD 70 (209)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 355666666666655555
No 102
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=34.28 E-value=3.3e+02 Score=25.35 Aligned_cols=75 Identities=15% Similarity=0.228 Sum_probs=41.5
Q ss_pred hcChhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhh
Q 023714 92 KASAKESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKY 167 (278)
Q Consensus 92 ~~~~ees~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e~gkey 167 (278)
...-+++||..+-+|++|+.=..-=.+-=+..|+-+... -+--++.++.++...++.+..=..+=.|-.+|=.+|
T Consensus 34 rdsq~eaqeQF~sALe~f~sl~~~~ggdLe~~Y~~ln~~-ye~s~~~A~~V~~RI~~vE~Va~ALF~EWe~EL~~Y 108 (201)
T PF11172_consen 34 RDSQQEAQEQFKSALEQFKSLVNFDGGDLEDKYNALNDE-YESSEDAAEEVSDRIDAVEDVADALFDEWEQELDQY 108 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334457888888888888854332223334566665432 333444566666666666654444444444443334
No 103
>PRK03557 zinc transporter ZitB; Provisional
Probab=33.52 E-value=2.7e+02 Score=26.03 Aligned_cols=54 Identities=11% Similarity=0.103 Sum_probs=35.4
Q ss_pred ceechhHHHHHHHhhHHHHHhcCChhHHHHHHH--HHHHHHHHHHhhhhhhcCCCC
Q 023714 201 FYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVI--LGGTLLALSIASLRSHKKGKT 254 (278)
Q Consensus 201 FclgipYG~Lva~GGiiGY~kaGS~~SL~aGl~--~G~lLL~aGygSLk~~k~gk~ 254 (278)
.++.+...+++++..+++.+.+||.+=|.=|+= .-.+..++++.+++..++|.+
T Consensus 21 ~~~~~~~n~~l~i~k~~~g~~tgS~AllaDa~hsl~D~~~~~~~l~a~~~s~kp~d 76 (312)
T PRK03557 21 LLYAFGVTAGFMLVEVIGGFLSGSLALLADAGHMLTDAAALLFALLAVQFSRRPPT 76 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 566777777777888888888999875554442 223334455666777777654
No 104
>PF10310 DUF2413: Protein of unknown function (DUF2413); InterPro: IPR018814 This entry represents a family of proteins conserved in fungi. Their function is not known.
Probab=33.43 E-value=1.4e+02 Score=30.36 Aligned_cols=33 Identities=21% Similarity=0.378 Sum_probs=24.0
Q ss_pred CchhhHHHhhcCCCC--cccccccccccceechhHH
Q 023714 175 NPEVKEIVETFTLPT--EDVKEFSTLRDFYLGIPYG 208 (278)
Q Consensus 175 sp~vK~i~et~~~~~--e~~~~~skmHDFclgipYG 208 (278)
.|.+-+|+.|+..+- +...++-..||. .||+|=
T Consensus 186 ~~t~T~il~tlappIs~hE~L~Ihl~HDL-~gY~~L 220 (444)
T PF10310_consen 186 LPTFTNILNTLAPPISSHERLQIHLTHDL-VGYPSL 220 (444)
T ss_pred chHHHHHHHHhCCCccccceEEEEEEeec-CCCccH
Confidence 667778999988773 234668889998 677654
No 105
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=33.35 E-value=36 Score=35.51 Aligned_cols=61 Identities=33% Similarity=0.512 Sum_probs=0.0
Q ss_pred hhhHHHhhcCCCCc---cc-ccccccccceech-----hHHHHHHHhhHHHHHhc-----------------------CC
Q 023714 177 EVKEIVETFTLPTE---DV-KEFSTLRDFYLGI-----PYGLLLTLGGFISFMVT-----------------------GS 224 (278)
Q Consensus 177 ~vK~i~et~~~~~e---~~-~~~skmHDFclgi-----pYG~Lva~GGiiGY~ka-----------------------GS 224 (278)
+...||++.+-|.= || --.+...=|.+|+ +||++++++|++.+.+. -+
T Consensus 345 pFe~iv~~Yg~P~Y~EiDPt~~~ai~fp~fFG~MfGD~GyGlll~l~~l~l~~~~~~~~~~~~e~~~~~~~~~~il~~~g 424 (759)
T PF01496_consen 345 PFEMIVDMYGLPKYREIDPTPFMAITFPFFFGMMFGDAGYGLLLLLFGLLLIKKFKKLKKMKNEIFNMLFKLRYILLLMG 424 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhcCCCCCCccccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHH
Confidence 44456666655421 12 2234555566664 78999999888766542 23
Q ss_pred hhHHHHHHHHHHH
Q 023714 225 IPAIRFGVILGGT 237 (278)
Q Consensus 225 ~~SL~aGl~~G~l 237 (278)
+.|.++|++.|..
T Consensus 425 i~si~~G~iyg~~ 437 (759)
T PF01496_consen 425 ISSIIFGFIYGSF 437 (759)
T ss_dssp -------------
T ss_pred HHHHHHHHHHhhH
Confidence 4677788887776
No 106
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=33.11 E-value=1e+02 Score=32.83 Aligned_cols=11 Identities=18% Similarity=-0.001 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 023714 260 KGQAGQRVVYF 270 (278)
Q Consensus 260 ~~SavLAavm~ 270 (278)
+....+|.++|
T Consensus 266 ~~e~~ia~~lF 276 (764)
T TIGR02865 266 LYEALIATLLF 276 (764)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 107
>PRK04201 zinc transporter ZupT; Provisional
Probab=32.57 E-value=2.1e+02 Score=26.18 Aligned_cols=29 Identities=24% Similarity=0.434 Sum_probs=23.7
Q ss_pred ccccccceechhHHHHHHHhhHHHHHhcC
Q 023714 195 FSTLRDFYLGIPYGLLLTLGGFISFMVTG 223 (278)
Q Consensus 195 ~skmHDFclgipYG~Lva~GGiiGY~kaG 223 (278)
.++.+-+++.+.+++...+|+++||...+
T Consensus 178 ~s~~~~~~~~~~~~l~~p~G~~~g~~~~~ 206 (265)
T PRK04201 178 GSKKKAFLYSFLSGLAEPLGAVLGYLLLG 206 (265)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35566677888999999999999998764
No 108
>PF03779 SPW: SPW repeat; InterPro: IPR005530 A short repeat found in a small family of membrane-bound proteins. This repeat contains a conserved SPW motif in the first of two transmembrane helices [].
Probab=32.12 E-value=66 Score=23.36 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=27.2
Q ss_pred chhHHHHHHHhh-HHHHHhcCChhHHHHHHHHHHHHHHHHHhhhhhh
Q 023714 204 GIPYGLLLTLGG-FISFMVTGSIPAIRFGVILGGTLLALSIASLRSH 249 (278)
Q Consensus 204 gipYG~Lva~GG-iiGY~kaGS~~SL~aGl~~G~lLL~aGygSLk~~ 249 (278)
.+.-|+.+++.= ++|| +++.......++.|.+..++++......
T Consensus 5 ~~llGlwli~SPWvlgf--~~~~~~~~~~vi~G~~v~~la~~~~~~~ 49 (51)
T PF03779_consen 5 NLLLGLWLIVSPWVLGF--SATAAAAWNNVIVGILVALLALWFLAAP 49 (51)
T ss_pred HHHHHHHHHHhHHHccc--CCchhHHHHHHHHHHHHHHHHHHHhccc
Confidence 334444444333 4577 5555666778889988888887655443
No 109
>PRK06743 flagellar motor protein MotP; Reviewed
Probab=32.05 E-value=1.7e+02 Score=27.48 Aligned_cols=106 Identities=13% Similarity=0.106 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHH--hhhhhhhhHhH----Hhhc-Cc-hhhHHHhhcCCC-Ccccccccccccceec--h
Q 023714 137 ETAEQLKIEAEKARKDLTVVAKE--LSEDGKKYLTE----ATEN-NP-EVKEIVETFTLP-TEDVKEFSTLRDFYLG--I 205 (278)
Q Consensus 137 etse~L~iqa~ka~~~L~~~ake--~~e~gkeyl~~----aaen-sp-~vK~i~et~~~~-~e~~~~~skmHDFclg--i 205 (278)
|+-+++-.-++|||++ +-+|=| +-+--.+++.. ..+. +| .++++.|+-... .+...+...+-+-.-+ .
T Consensus 73 ~~i~~l~~la~~aRr~-GlLaLE~~~~~~~d~fl~~gl~l~vdg~~~e~i~~~le~~~~~~~~~~~~~~~~l~~~a~~AP 151 (254)
T PRK06743 73 QLTDLFVDFSKKSKKH-GLLSLEVDGEQVDNPFIQKGIRLMLSGYDEDELKEVLMKDVETEVYELRKGAALLDKIGDFAP 151 (254)
T ss_pred HHHHHHHHHHHHHHhc-CHHHHHhhccCCccHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4555566667777754 333333 22222233333 3223 44 888888874432 2222222222222222 2
Q ss_pred hHHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHh
Q 023714 206 PYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIA 244 (278)
Q Consensus 206 pYG~Lva~GGiiGY~kaGS~~SL~aGl~~G~lLL~aGyg 244 (278)
.+|++=++-|++.-+..=+-++.+++.+. .+|+.-.||
T Consensus 152 ~lGllGTVlGLI~~~~~l~~p~~lg~gIa-~ALvtT~yG 189 (254)
T PRK06743 152 AWGMIGTLIGLIIMLQNLQDTSQIGTGMA-VAMLTTLYG 189 (254)
T ss_pred HHHHHHHHHHHHHHhHccCCHHHHHHHHH-HHHHHHHHH
Confidence 36666666777776665444555443333 333333343
No 110
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=31.98 E-value=50 Score=26.76 Aligned_cols=26 Identities=19% Similarity=0.070 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCCCC
Q 023714 229 RFGVILGGTLLALSIASLRSHKKGKT 254 (278)
Q Consensus 229 ~aGl~~G~lLL~aGygSLk~~k~gk~ 254 (278)
+.|+++|.+++++||..+|+++..+-
T Consensus 6 iv~~~~~v~~~i~~y~~~k~~ka~~~ 31 (87)
T PF10883_consen 6 IVGGVGAVVALILAYLWWKVKKAKKQ 31 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777778899999999887543
No 111
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI
Probab=31.61 E-value=2.1e+02 Score=22.77 Aligned_cols=83 Identities=22% Similarity=0.263 Sum_probs=58.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhh------hhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhh
Q 023714 95 AKESEEAWKQTLAAFREQAIKMQ------SVSQEA---YEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGK 165 (278)
Q Consensus 95 ~ees~E~Wkq~L~~fkeqa~kmq------~~s~ea---Y~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e~gk 165 (278)
.|.|++.=++.+...+-|..|.+ .++.+. |-..++.+..+|..+.+++..-.--.. -+--+|.-|.+
T Consensus 2 ~esS~~ir~rV~~Ar~~Q~~R~~~~~~Na~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~R~~~-rilrvARTIAD--- 77 (96)
T PF13335_consen 2 GESSAEIRERVEAARERQRERYGGIKCNAQLPGEELRKYCPLSSEAKKLLEQAAEKLNLSARGYH-RILRVARTIAD--- 77 (96)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCCccccCCHHHHHhHcCCCHHHHHHHHHHHHHcCcCHHHHH-HHHHHHHHHHh---
Confidence 45677777888888888888877 556655 555678999999999888877665555 44456666666
Q ss_pred hhHhHHhhcCchhhHHHhhc
Q 023714 166 KYLTEATENNPEVKEIVETF 185 (278)
Q Consensus 166 eyl~~aaensp~vK~i~et~ 185 (278)
+.-...+...+|.|++
T Consensus 78 ----L~~~~~I~~~hi~EAl 93 (96)
T PF13335_consen 78 ----LEGSERITREHIAEAL 93 (96)
T ss_pred ----HcCCCCCCHHHHHHHH
Confidence 4444555777887775
No 112
>COG2979 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.60 E-value=1.3e+02 Score=28.38 Aligned_cols=23 Identities=22% Similarity=0.259 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcCCC
Q 023714 228 IRFGVILGGTLLALSIASLRSHKKGK 253 (278)
Q Consensus 228 L~aGl~~G~lLL~aGygSLk~~k~gk 253 (278)
-++|+..++. ++|-+|+.|++++
T Consensus 62 k~GglAAlG~---laY~aY~N~q~~q 84 (225)
T COG2979 62 KLGGLAALGA---LAYKAYQNYQKGQ 84 (225)
T ss_pred hhhhHHHHHH---HHHHHHHHHhccC
Confidence 3444444444 8899999999887
No 113
>PRK07194 fliG flagellar motor switch protein G; Reviewed
Probab=31.57 E-value=77 Score=30.31 Aligned_cols=54 Identities=30% Similarity=0.409 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHhhhhhhhhHhHHhhc
Q 023714 121 QEAYEIYSKRATAILKETAEQL----KIEAEKARKDLTVVAKELSEDGKKYLTEATEN 174 (278)
Q Consensus 121 ~eaY~vys~ka~~vL~etse~L----~iqa~ka~~~L~~~ake~~e~gkeyl~~aaen 174 (278)
.+-+.--|+||.+.|+|=-|.+ ..+.|+||+..-.+++.+.++|+=-|...+|.
T Consensus 274 ~~il~nmS~Raa~~l~eele~~gpV~~sdvE~Aq~~Iv~~~r~L~~~G~I~l~~~~~~ 331 (334)
T PRK07194 274 QAILRVMPKRQAQALEAQIERLGPVPLSRVEQARKEIMALVRELAEAGEIELQLFEEQ 331 (334)
T ss_pred HHHHHHccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCEEEeecccc
Confidence 4557778999999999987765 56899999999999999999998777666553
No 114
>KOG4119 consensus G protein gamma subunit [Signal transduction mechanisms]
Probab=31.52 E-value=93 Score=24.55 Aligned_cols=41 Identities=32% Similarity=0.477 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhhcCchhh
Q 023714 135 LKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNPEVK 179 (278)
Q Consensus 135 L~etse~L~iqa~ka~~~L~~~ake~~e~gkeyl~~aaensp~vK 179 (278)
++-+.||||.++.--|.+.+..|+|+- +|+..-+.+-|-++
T Consensus 12 ~k~~VeqLk~e~~~~R~~vS~a~~el~----~y~E~~~~~DpLl~ 52 (71)
T KOG4119|consen 12 MKKEVEQLKLEANIERIKVSKAAAELL----EYCETHATEDPLLE 52 (71)
T ss_pred HHHHHHHHHHHHHhhHhhHHHHHHHHH----HHHHhcCccCcccc
Confidence 455889999999988999999999984 58877777777443
No 115
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=31.49 E-value=2.8e+02 Score=22.43 Aligned_cols=73 Identities=18% Similarity=0.208 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhh
Q 023714 98 SEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATE 173 (278)
Q Consensus 98 s~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e~gkeyl~~aae 173 (278)
++..=+++++.-+++|.++.. ++=+-=...|..+|.++-++...+.++|..++..-...+...+++.+..|.+
T Consensus 22 A~~Ea~~Ii~~Ak~~A~k~~~---eii~eA~~eA~~ile~Ak~eie~Ek~~a~~elk~eia~L~~~a~~k~~~av~ 94 (103)
T PRK08404 22 AKEEAKKIIRKAKEEAKKIEE---EIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEIEELKVKAEENFETAVS 94 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555544421 2222224567778999999999999999999999888888888888877765
No 116
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=31.24 E-value=88 Score=29.30 Aligned_cols=56 Identities=16% Similarity=0.167 Sum_probs=34.8
Q ss_pred hhhHHHhhcCCCC-cccccccccccceechhHHHHHHHhhHHHHHhcCChhHHHHHHHHHHH
Q 023714 177 EVKEIVETFTLPT-EDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGT 237 (278)
Q Consensus 177 ~vK~i~et~~~~~-e~~~~~skmHDFclgipYG~Lva~GGiiGY~kaGS~~SL~aGl~~G~l 237 (278)
..+.|.++|.-.- +|++ ==.|+...+.+.++++-++||+...=+.-++.|+++|.+
T Consensus 9 ~~~Qi~q~y~~trk~dp~-----l~~~ml~a~l~~~~v~v~ig~l~~~~~~~~i~gi~~g~l 65 (224)
T PF13829_consen 9 RRKQIWQAYKMTRKEDPK-----LPWLMLGAFLGPIAVFVLIGLLFGSWWYWLIIGILLGLL 65 (224)
T ss_pred HHHHHHHHHHHHHHHCcc-----hHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 5666766665431 1111 113444556666777888888888667777788877766
No 117
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=31.18 E-value=3.2e+02 Score=22.90 Aligned_cols=73 Identities=19% Similarity=0.163 Sum_probs=42.6
Q ss_pred hhhcChhhHHHHHHHHHHHHHHHHHHhhhhhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 023714 90 EIKASAKESEEAWKQTLAAFREQAIKMQSVSQEAY--------EIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELS 161 (278)
Q Consensus 90 ~~~~~~ees~E~Wkq~L~~fkeqa~kmq~~s~eaY--------~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~ 161 (278)
+...+.++..+.+++-|..-+.+|..+-.-..+.- +.--+.|..++.++.+++..+.++|..+|..-+..+.
T Consensus 50 ~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~~~~a~~~i~~e~~~a~~~l~~ei~~lA 129 (159)
T PRK13461 50 EDQKKARELKLKNERELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERAKLEAQREKEKAEYEIKNQAVDLA 129 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556677777777777777766544333222 2223445556666666666666777766655554444
Q ss_pred h
Q 023714 162 E 162 (278)
Q Consensus 162 e 162 (278)
.
T Consensus 130 ~ 130 (159)
T PRK13461 130 V 130 (159)
T ss_pred H
Confidence 4
No 118
>PF04474 DUF554: Protein of unknown function (DUF554); InterPro: IPR007563 This is a family of uncharacterised prokaryotic proteins. Multiple predicted transmembrane regions suggest that the protein is membrane associated.
Probab=31.00 E-value=3.1e+02 Score=25.62 Aligned_cols=62 Identities=24% Similarity=0.324 Sum_probs=35.4
Q ss_pred hhHHHHHHHhhHHHHHhcCChh-HHHHHHHH--HHHHHHHHHhhhhhhcCCCCchhHHHHHHHHHHHHH
Q 023714 205 IPYGLLLTLGGFISFMVTGSIP-AIRFGVIL--GGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYF 270 (278)
Q Consensus 205 ipYG~Lva~GGiiGY~kaGS~~-SL~aGl~~--G~lLL~aGygSLk~~k~gk~s~l~L~~SavLAavm~ 270 (278)
+.=++.+.+||++|....+.++ .+.-.+.- |...++.|+. -..+. +..+.+..+.++.+++|
T Consensus 5 iiN~~aIl~G~~iG~~~~~~i~~~~~~~l~~~~Gl~~l~iGi~--~~~~~--~~~~~vi~slvlG~iiG 69 (226)
T PF04474_consen 5 IINALAILLGGLIGLLLGRRIPERIKDTLMQALGLCVLAIGIS--MALKG--QNPLLVILSLVLGTIIG 69 (226)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhHHHHHHHHH--HHHcc--CccHHHHHHHHHHHHHH
Confidence 4557788899999998876654 23333322 3333333332 22222 44566667777777774
No 119
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=30.87 E-value=3.9e+02 Score=23.90 Aligned_cols=66 Identities=18% Similarity=0.193 Sum_probs=36.7
Q ss_pred hhhhcChhhHHHHHHHHHHHHHHHHHHhhhhhHHHHH-H-------HHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 023714 89 SEIKASAKESEEAWKQTLAAFREQAIKMQSVSQEAYE-I-------YSKRATAILKETAEQLKIEAEKARKDLT 154 (278)
Q Consensus 89 ~~~~~~~ees~E~Wkq~L~~fkeqa~kmq~~s~eaY~-v-------ys~ka~~vL~etse~L~iqa~ka~~~L~ 154 (278)
++...+.++.++..++-|..-+++|..+..-.++.-+ . =-+.|..++.++-.++..+.++|..+|.
T Consensus 92 e~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a~~~Lk 165 (205)
T PRK06231 92 NELKQQAQQLLENAKQRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKERRELKEQLQ 165 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556666666777776666665544333222 1 1234555666677777777777744443
No 120
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=30.73 E-value=2e+02 Score=28.35 Aligned_cols=27 Identities=22% Similarity=0.381 Sum_probs=18.9
Q ss_pred cccceechhHHHHHH-HhhHHHHHhcCC
Q 023714 198 LRDFYLGIPYGLLLT-LGGFISFMVTGS 224 (278)
Q Consensus 198 mHDFclgipYG~Lva-~GGiiGY~kaGS 224 (278)
...+++|+..|++++ ++|+++|+..|+
T Consensus 356 ~~e~~v~~~~g~~~g~~~~~~~~~~~~~ 383 (449)
T TIGR00400 356 LREICVSILVGAILASVNFLRIVFFQGK 383 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 578888888887765 456666666554
No 121
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=30.62 E-value=4.7e+02 Score=24.69 Aligned_cols=22 Identities=9% Similarity=-0.050 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhhhhhHHHH
Q 023714 103 KQTLAAFREQAIKMQSVSQEAY 124 (278)
Q Consensus 103 kq~L~~fkeqa~kmq~~s~eaY 124 (278)
+..|+.+.....+=..++.+..
T Consensus 333 ~~ll~~l~~~~~~~~~~~~~~~ 354 (511)
T PF09972_consen 333 RALLDWLFNASGDDNVFSLKEL 354 (511)
T ss_pred HHHHHHHhccCCCCceeccchh
Confidence 5667777666533334444444
No 122
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=30.56 E-value=3.4e+02 Score=23.12 Aligned_cols=39 Identities=13% Similarity=0.222 Sum_probs=18.6
Q ss_pred hhhcChhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 023714 90 EIKASAKESEEAWKQTLAAFREQAIKMQSVSQEAYEIYS 128 (278)
Q Consensus 90 ~~~~~~ees~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys 128 (278)
.+..+=+++++.=++.-+...+--.+++....||-++-.
T Consensus 45 ~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~ 83 (167)
T PRK14475 45 KIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLA 83 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455554444433333333555555555555443
No 123
>TIGR00220 mscL large conductance mechanosensitive channel protein. Protein encodes a channel which opens in response to a membrane stretch force. Probably serves as an osmotic gauge. Carboxy terminus tends to be more divergent across species with a high degree of sequence conservation found at the N-terminus.
Probab=30.27 E-value=57 Score=27.98 Aligned_cols=25 Identities=28% Similarity=0.712 Sum_probs=21.6
Q ss_pred hhHHHHHhcCChhHHHHHHHHHHHH
Q 023714 214 GGFISFMVTGSIPAIRFGVILGGTL 238 (278)
Q Consensus 214 GGiiGY~kaGS~~SL~aGl~~G~lL 238 (278)
-|+-.|+.+|++.-|..|++.|++.
T Consensus 3 ~~Fk~Fi~rGNVidLAVgVIIGaAF 27 (127)
T TIGR00220 3 KEFKEFAMRGNVVDLAVGVVIGGAF 27 (127)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4677899999999999999999873
No 124
>KOG2580 consensus Mitochondrial import inner membrane translocase, subunit TIM44 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.16 E-value=2e+02 Score=29.78 Aligned_cols=42 Identities=17% Similarity=0.381 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhhhhhH-----HHHH---HHHHHHHHHHHHHHHHHH
Q 023714 102 WKQTLAAFREQAIKMQSVSQ-----EAYE---IYSKRATAILKETAEQLK 143 (278)
Q Consensus 102 Wkq~L~~fkeqa~kmq~~s~-----eaY~---vys~ka~~vL~etse~L~ 143 (278)
-+.+...||+.+.+++.... ++|+ -|.+++-.+|+.+..+|+
T Consensus 82 lqe~iK~lkd~a~~L~esda~kkaR~k~~~~e~~t~~~s~~~kk~~~e~~ 131 (459)
T KOG2580|consen 82 LQESIKKLKDRAGELEESDALKKARTKYETAESETQASSEVLKKKLGELK 131 (459)
T ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 57788899999999987642 3443 466777777777764443
No 125
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=30.15 E-value=2.3e+02 Score=23.93 Aligned_cols=46 Identities=24% Similarity=0.122 Sum_probs=27.1
Q ss_pred cCChhHHHHHHHHHHH-HHHHHHhhhhhhcCCCCc-hhHHHHHHHHHH
Q 023714 222 TGSIPAIRFGVILGGT-LLALSIASLRSHKKGKTS-PVALKGQAGQRV 267 (278)
Q Consensus 222 aGS~~SL~aGl~~G~l-LL~aGygSLk~~k~gk~s-~l~L~~SavLAa 267 (278)
.|+.+-.-++.+.|.+ .+..|-.-++-.|+||.. +++-.++--++.
T Consensus 48 ~g~~a~~pt~~ll~~~~~v~~gg~~l~rlKRGKP~~yl~r~l~~~l~~ 95 (121)
T PF11990_consen 48 TGWWAMIPTGALLGPILGVFVGGKLLARLKRGKPEGYLYRRLQWRLAR 95 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCchhHHHHHHHHHHHH
Confidence 6776433333333333 233344556888999975 788777766554
No 126
>TIGR01760 tape_meas_TP901 phage tail tape measure protein, TP901 family, core region. This model represents a reasonably well conserved core region of a family of phage tail proteins. The member from phage TP901-1 was characterized as a tail length tape measure protein in that a shortened form of the protein leads to phage with proportionately shorter tails.
Probab=30.01 E-value=1.7e+02 Score=26.85 Aligned_cols=48 Identities=17% Similarity=0.206 Sum_probs=27.4
Q ss_pred HHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhhcCchhhHHHhhcCCCCcccccccccc
Q 023714 142 LKIEAEKARKDLTVVAKELSEDGKKYLTEATENNPEVKEIVETFTLPTEDVKEFSTLR 199 (278)
Q Consensus 142 L~iqa~ka~~~L~~~ake~~e~gkeyl~~aaensp~vK~i~et~~~~~e~~~~~skmH 199 (278)
+.-+.++.+..+..+...+|+. -.|.++++++.++...+...++.+-|
T Consensus 284 ~~~~~~~l~~~~~~~~~~ig~~----------l~p~l~~~~~~~~~~~~~~~~~~~~~ 331 (350)
T TIGR01760 284 LKGQLKLLQNAIENAFIELGEA----------LLPALRELAQALTKLINAINGLAKEN 331 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------hhHHHHHHHHHHHHHHHHHHHhhHhC
Confidence 4445555666666666666653 25667777777666554444444443
No 127
>COG0803 LraI ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=29.84 E-value=2.4e+02 Score=26.36 Aligned_cols=88 Identities=16% Similarity=0.185 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHhHH-----
Q 023714 97 ESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEA----- 171 (278)
Q Consensus 97 es~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e~gkeyl~~a----- 171 (278)
-+=+-|+++.+.++++-.++--=-++-|+-+.++...=|++..+..+...++... ... =-+..+.=.||...
T Consensus 137 ldp~na~~~v~~I~~~L~~~dP~~~~~y~~N~~~y~~kL~~l~~~~~~~~~~~~~-~r~--~vt~h~af~Y~~~~~g~~~ 213 (303)
T COG0803 137 LDPKNAKIYAENIADALVELDPENKETYEKNAEAYLKKLNKLDEEAKAKLSKIPA-QRD--VVTSHGAFGYLARDYGLKQ 213 (303)
T ss_pred cCHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-CcE--EEeecchHHHHHhccCCcc
Confidence 4667899999999998888877777778777666444444444444444444331 000 01223333444442
Q ss_pred ---------hhcCc-hhhHHHhhcCC
Q 023714 172 ---------TENNP-EVKEIVETFTL 187 (278)
Q Consensus 172 ---------aensp-~vK~i~et~~~ 187 (278)
.|=|| .+++|++.+..
T Consensus 214 ~~i~~~~~~~e~s~~~l~~l~~~ik~ 239 (303)
T COG0803 214 VAIAGISPEAEPSPKDLAKLVDLIKK 239 (303)
T ss_pred ccccCcCcccCCCHHHHHHHHHHHHH
Confidence 44455 88888887765
No 128
>cd00068 GGL G protein gamma subunit-like motifs, the alpha-helical G-gamma chain dimerizes with the G-beta propeller subunit as part of the heterotrimeric G-protein complex; involved in signal transduction via G-protein-coupled receptors
Probab=29.81 E-value=86 Score=22.94 Aligned_cols=41 Identities=37% Similarity=0.510 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhhcCchh
Q 023714 134 ILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNPEV 178 (278)
Q Consensus 134 vL~etse~L~iqa~ka~~~L~~~ake~~e~gkeyl~~aaensp~v 178 (278)
.++...||||.+++.-|--.+..|+++ +.|...-+++-|-|
T Consensus 3 ~~~~~veqLr~el~~~RikvS~a~~~l----~~y~e~~~~~Dpll 43 (57)
T cd00068 3 QLKKEVEQLRKELSRERLKVSKAAAEL----LKYCEQNAENDPLL 43 (57)
T ss_pred HHHHHHHHHHHHHCCchhhHHHHHHHH----HHHHHhcCCCCCCC
Confidence 467788999999999888888888877 45877777777743
No 129
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=29.77 E-value=49 Score=29.03 Aligned_cols=23 Identities=39% Similarity=0.421 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhh
Q 023714 96 KESEEAWKQTLAAFREQAIKMQS 118 (278)
Q Consensus 96 ees~E~Wkq~L~~fkeqa~kmq~ 118 (278)
++.+|+|+++-..+.|-+.++..
T Consensus 59 ~~~~e~l~~~~~kl~et~~~L~k 81 (155)
T PF07464_consen 59 PEAEEALKQLKTKLEETAEKLRK 81 (155)
T ss_dssp STHHHHHHHHHHHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555544444444444443
No 130
>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan.
Probab=29.68 E-value=3.7e+02 Score=23.55 Aligned_cols=38 Identities=21% Similarity=0.363 Sum_probs=23.6
Q ss_pred HHHHH-HHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHh
Q 023714 207 YGLLL-TLGGFISFMVTGSIPAIRFGVILGGTLLALSIA 244 (278)
Q Consensus 207 YG~Lv-a~GGiiGY~kaGS~~SL~aGl~~G~lLL~aGyg 244 (278)
++... ++++++.++..|....+...+.+|..-+.+|++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~lg~~ 77 (290)
T PF09991_consen 39 YGLIALLAAAVLLALFGGPVSALFYLLFFGLPGLVLGYL 77 (290)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44333 333355556666677777777777777777776
No 131
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=29.43 E-value=6.1e+02 Score=25.65 Aligned_cols=40 Identities=20% Similarity=0.047 Sum_probs=25.9
Q ss_pred hHHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHhhh
Q 023714 206 PYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASL 246 (278)
Q Consensus 206 pYG~Lva~GGiiGY~kaGS~~SL~aGl~~G~lLL~aGygSL 246 (278)
...+++-+=+++|..+ +|...++.=.++|.+.+.+++++.
T Consensus 217 ~~~lviC~~~l~gl~r-~Sr~~li~~s~~g~l~l~~~W~~~ 256 (418)
T cd07912 217 SLLLVICLVLLVGLAR-HSRCLLIVFSVCGLFALIISWLSL 256 (418)
T ss_pred HHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556777654 567777777778888777766543
No 132
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=29.34 E-value=3.4e+02 Score=22.71 Aligned_cols=37 Identities=8% Similarity=0.222 Sum_probs=25.0
Q ss_pred hhhhhhcChhhHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 023714 87 ESSEIKASAKESEEAWKQTLAAFREQAIKMQSVSQEA 123 (278)
Q Consensus 87 e~~~~~~~~ees~E~Wkq~L~~fkeqa~kmq~~s~ea 123 (278)
+-++...+.++..+.+++.|...+.+|..+-.-....
T Consensus 44 ~Ae~~~~eA~~~~~~~e~~L~~A~~ea~~ii~~A~~~ 80 (159)
T PRK09173 44 EARRLREEAQQLLAEYQRKRKEAEKEAADIVAAAERE 80 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555667778888888888888887765444333
No 133
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=29.03 E-value=92 Score=29.98 Aligned_cols=52 Identities=25% Similarity=0.294 Sum_probs=28.2
Q ss_pred ccccccccee---------chhHHHHHHHhhHHHHHhc-CChhHHHHHHHHHHHHHHHHHhh
Q 023714 194 EFSTLRDFYL---------GIPYGLLLTLGGFISFMVT-GSIPAIRFGVILGGTLLALSIAS 245 (278)
Q Consensus 194 ~~skmHDFcl---------gipYG~Lva~GGiiGY~ka-GS~~SL~aGl~~G~lLL~aGygS 245 (278)
+.-++|..|. |+.=|++.++|=++.-+.. +|.+=.++|+++|++-.+.++++
T Consensus 87 ~idk~Hk~~tisnvv~ss~g~vsGilsIlGLaLAPvT~G~SL~LsaaG~GlgaaagvT~i~t 148 (313)
T PF05461_consen 87 EIDKVHKDCTISNVVGSSTGAVSGILSILGLALAPVTAGGSLALSAAGIGLGAAAGVTSIST 148 (313)
T ss_pred HHHHHHHhhHHHHHHhhhHHHHhhHHHHHhHHhccccccchHHHHHhhhHHHHHhhhhHHHH
Confidence 4556777774 3333333222222222322 77777788888888854444443
No 134
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=29.02 E-value=2.9e+02 Score=23.27 Aligned_cols=53 Identities=28% Similarity=0.335 Sum_probs=29.9
Q ss_pred HHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHh-hhhhhcCCCCc-hhHHHHHHH
Q 023714 211 LTLGGFISFMVTGSIPAIRFGVILGGTLLALSIA-SLRSHKKGKTS-PVALKGQAG 264 (278)
Q Consensus 211 va~GGiiGY~kaGS~~SL~aGl~~G~lLL~aGyg-SLk~~k~gk~s-~l~L~~Sav 264 (278)
+.+|-.+.+ ..|..+-.-+|.+.|.++.+.--+ -++..|+||.. |++-.++..
T Consensus 35 l~~g~~l~~-~~~~w~~~p~~~lig~~l~v~~gg~~l~rlKRGrPe~yl~r~l~~~ 89 (111)
T TIGR03750 35 LVLGLLLAL-LAGPWALIPTGALLGPILVVLIGGKLLARLKRGKPEGYLYRKLEWK 89 (111)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCchHHHHHHHHH
Confidence 334433333 334555555666666654433333 36888999854 777777633
No 135
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=29.01 E-value=1.8e+02 Score=20.29 Aligned_cols=38 Identities=13% Similarity=0.279 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhh
Q 023714 130 RATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKY 167 (278)
Q Consensus 130 ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e~gkey 167 (278)
.|..-..+.-+++....++....|..+.+.+..-...|
T Consensus 44 ~a~~af~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~~ 81 (86)
T PF06013_consen 44 EAADAFQDKFEEWNQAFRQLNEALEELSQALRQAAQNY 81 (86)
T ss_dssp STSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555566666666666666666666555444
No 136
>COG3759 Predicted membrane protein [Function unknown]
Probab=28.90 E-value=1.1e+02 Score=26.39 Aligned_cols=43 Identities=26% Similarity=0.206 Sum_probs=31.6
Q ss_pred hHHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHhhhhh
Q 023714 206 PYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRS 248 (278)
Q Consensus 206 pYG~Lva~GGiiGY~kaGS~~SL~aGl~~G~lLL~aGygSLk~ 248 (278)
.|-++++.|=+.|-...++-.-=+.=.+.+.++.++-||++-.
T Consensus 57 lYNgfL~~~li~gl~f~~~~~~~~~~~~l~~v~~aa~~Galts 99 (121)
T COG3759 57 LYNGFLGAGLVYGLFFSGAGGAEIALFFLGCVLVAAIYGALTS 99 (121)
T ss_pred hHHHHHHHHHHHheeecCCCchHHHHHHHHHHHHHHHHhhhcc
Confidence 4778888888888888876333344556677888888888866
No 137
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=28.85 E-value=1.5e+02 Score=23.99 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=21.1
Q ss_pred HHHhhhhhhcCCCCchhHHHHHHHHHHHH
Q 023714 241 LSIASLRSHKKGKTSPVALKGQAGQRVVY 269 (278)
Q Consensus 241 aGygSLk~~k~gk~s~l~L~~SavLAavm 269 (278)
+.+..|+..++||..|--+.+-.++.+++
T Consensus 45 ~~i~~y~eir~gK~~W~~fg~~~vVGvvL 73 (87)
T PF11190_consen 45 AAISTYNEIRDGKKTWGDFGATVVVGVVL 73 (87)
T ss_pred HHHHHHHHHHcCcccHHHhhhHHHHHHHH
Confidence 34677788888999987777666666555
No 138
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=28.72 E-value=3.1e+02 Score=22.02 Aligned_cols=71 Identities=14% Similarity=0.093 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHhHH
Q 023714 98 SEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEA 171 (278)
Q Consensus 98 s~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e~gkeyl~~a 171 (278)
..+..+.+++..++-...++.+-..|=+.--.....+|++-.+..+.+..-.+ ++-...+.+|+ +.||...
T Consensus 82 ~~~~l~~~l~~E~~~~~~y~~~~~~A~~~~D~~t~~~l~~~~~~e~~h~~~l~-~~l~~~~~~g~--~~~~~~~ 152 (153)
T cd00907 82 VPEMLENDLALEYEAIAALNEAIALCEEVGDYVSRDLLEEILEDEEEHIDWLE-TQLDLIDKMGL--QNYLQSQ 152 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCH--HHHHHhc
Confidence 45777777777776555555555444444445566677777666676666666 45556677887 8998753
No 139
>PHA00490 terminal protein
Probab=28.38 E-value=58 Score=30.95 Aligned_cols=100 Identities=21% Similarity=0.336 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhhcC
Q 023714 98 SEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRAT--AILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENN 175 (278)
Q Consensus 98 s~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~--~vL~etse~L~iqa~ka~~~L~~~ake~~e~gkeyl~~aaens 175 (278)
--.+||+--++|-..|-+==..-+.+|.|-.-||+ +|+++|-|-- .-+|+ +-+++-+ +||++-- .+
T Consensus 56 qFN~wK~~aeSFTnRaN~~yQFvKN~YGvVaSKaki~EI~~nTKeaQ-rvvde-------~~~~~~D--ke~isGG--k~ 123 (266)
T PHA00490 56 QFNAWKKRAESFTNRANRDYQFVKNEYGVVASKAKIDEIESNTKEAQ-RVVDE-------ILDRFND--KEVISGG--KS 123 (266)
T ss_pred HHHHHHHHHHhhhcccccchhhhccchheeeeHhHHHHHHhccHHHH-HHHHH-------HHHHhcC--cceeeCC--CC
Confidence 44589999999998887665666788999888876 5777774432 22332 2233322 4444321 11
Q ss_pred c-hhhHHHhhcCCCCcccccccccccceech--hHHHHH
Q 023714 176 P-EVKEIVETFTLPTEDVKEFSTLRDFYLGI--PYGLLL 211 (278)
Q Consensus 176 p-~vK~i~et~~~~~e~~~~~skmHDFclgi--pYG~Lv 211 (278)
- .|-+=.+- .++. +..+....|||-|.= .|..|=
T Consensus 124 qGTvgqr~~l-lsp~-~vtG~~Rp~DFdF~kVrsy~rLr 160 (266)
T PHA00490 124 QGTVGQRKEL-LSPP-DVTGFGRPEDFDFNKVRSYERLR 160 (266)
T ss_pred CCcHhhhhhh-cCCc-ccCCCCChhccChHHHHHHHHHH
Confidence 1 34333333 3434 578899999998753 355443
No 140
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=28.11 E-value=2.5e+02 Score=24.10 Aligned_cols=56 Identities=21% Similarity=0.347 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhhHHH
Q 023714 95 AKESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRA-----------TAILKETAEQLKIEAEKARKDLT 154 (278)
Q Consensus 95 ~ees~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka-----------~~vL~etse~L~iqa~ka~~~L~ 154 (278)
.+...|+|++.++.++.+ -.++++-.++-..=. ...|.-+.|+|+.+.+.|+++..
T Consensus 82 ~~~~~~~w~~~~~~~~~~----~~L~~~d~e~L~~lg~~LG~~D~~~Q~k~i~l~~~~L~~~~~~a~~~~~ 148 (170)
T PF09548_consen 82 GESFAEAWEEAVEKLLKE----SALKKEDKEILLELGKSLGYSDREMQEKHIELYLEQLEQQLEEAREEAK 148 (170)
T ss_pred CCCHHHHHHHHHHhhhhc----CCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999986521 233333333322211 13456677777777777775543
No 141
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=28.08 E-value=64 Score=24.05 Aligned_cols=16 Identities=38% Similarity=0.548 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHh
Q 023714 229 RFGVILGGTLLALSIA 244 (278)
Q Consensus 229 ~aGl~~G~lLL~aGyg 244 (278)
+.|++++++|.++|+.
T Consensus 16 igGLi~A~vlfi~Gi~ 31 (50)
T PF02038_consen 16 IGGLIFAGVLFILGIL 31 (50)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHH
Confidence 4677777777777764
No 142
>PRK10711 hypothetical protein; Provisional
Probab=28.04 E-value=2e+02 Score=26.96 Aligned_cols=72 Identities=11% Similarity=0.033 Sum_probs=48.9
Q ss_pred chhHHHHHHHhhHHHHHhcCCh--hHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHHHHHHH-HHHHhh
Q 023714 204 GIPYGLLLTLGGFISFMVTGSI--PAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVY-FTIEIT 275 (278)
Q Consensus 204 gipYG~Lva~GGiiGY~kaGS~--~SL~aGl~~G~lLL~aGygSLk~~k~gk~s~l~L~~SavLAavm-~~R~~~ 275 (278)
..|+.+++...+..-|-|.++. .-+....++-.+++.+.=.+|+.|++|.+...++.+=+++|..+ .||+++
T Consensus 8 ~~~lTl~~y~~~~~l~~k~~~~~l~Pll~s~~~ii~~L~~~~i~Y~~Y~~g~~~l~~lLgPAtVALAvPLY~q~~ 82 (231)
T PRK10711 8 SLPLTLIVFFAARKLAARFKFPLLNPLLVAMVVIIPFLLLTGIPYEHYFKGSEVLNDLLQPAVVALAFPLYEQLH 82 (231)
T ss_pred HhHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHhCCCHHHHHhccHHHHhhhhHHHHHHHHHHHHhHH
Confidence 4566777778888888888772 22344444444445555568999999998888888877777666 555543
No 143
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=28.01 E-value=51 Score=29.43 Aligned_cols=31 Identities=13% Similarity=0.106 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHH-HhhhhhhcCCCCch
Q 023714 226 PAIRFGVILGGTLLALS-IASLRSHKKGKTSP 256 (278)
Q Consensus 226 ~SL~aGl~~G~lLL~aG-ygSLk~~k~gk~s~ 256 (278)
..+|+|++++.+..++| +.||-.|++.|.|+
T Consensus 114 ~g~IaGIvsav~valvGAvsSyiaYqkKKlCF 145 (169)
T PF12301_consen 114 AGTIAGIVSAVVVALVGAVSSYIAYQKKKLCF 145 (169)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhhccce
Confidence 34455555554443333 36677777777775
No 144
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=27.88 E-value=2.6e+02 Score=26.38 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=22.5
Q ss_pred HHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHhhhhhhcCCC
Q 023714 212 TLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGK 253 (278)
Q Consensus 212 a~GGiiGY~kaGS~~SL~aGl~~G~lLL~aGygSLk~~k~gk 253 (278)
++||++-|...|+. +|..+|++-...||..+...++|.
T Consensus 183 i~~~~~~~~~~~~~----~gGaSGvVygL~g~~~~~~~~~p~ 220 (276)
T PRK10907 183 LLSGWVQSKFSGPW----FGGLSGVVYALMGYVWLRGERDPQ 220 (276)
T ss_pred HHHHHHHHHHccch----hhHHHHHHHHHHHHHHHHhccccc
Confidence 34556666666643 456666666666776665555543
No 145
>PRK08383 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=27.88 E-value=4.1e+02 Score=23.48 Aligned_cols=38 Identities=11% Similarity=0.112 Sum_probs=26.5
Q ss_pred HHHHhhHHHHHhcCC-------hhHHHHHHHHHHHHHHHHHhhhhhhc
Q 023714 210 LLTLGGFISFMVTGS-------IPAIRFGVILGGTLLALSIASLRSHK 250 (278)
Q Consensus 210 Lva~GGiiGY~kaGS-------~~SL~aGl~~G~lLL~aGygSLk~~k 250 (278)
...+-.++..+.+|| ...+..|+++|.+ +.+...+.+.
T Consensus 6 ~~~~l~~~WllLsg~~~~~~~s~~~l~~Gll~~~~---v~~l~~~~~~ 50 (168)
T PRK08383 6 AFIWSYVLWLVLTAGSKGLLWSPEELIAGLIFAAI---VGYATRNIIG 50 (168)
T ss_pred HHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHH---HHHHHhcccc
Confidence 334455677888886 6789999999987 5566555543
No 146
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=27.58 E-value=1.4e+02 Score=28.70 Aligned_cols=56 Identities=14% Similarity=0.091 Sum_probs=30.8
Q ss_pred HHhcCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHHHHHHHHHHHh
Q 023714 219 FMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFTIEI 274 (278)
Q Consensus 219 Y~kaGS~~SL~aGl~~G~lLL~aGygSLk~~k~gk~s~l~L~~SavLAavm~~R~~ 274 (278)
|.+++.+.-++.|++|=.+-+.+.++-+..-++-+-.+..-++-.++|.+++.|-+
T Consensus 193 faRkR~i~f~llgllfliiaigltvGT~~~A~~~~giY~~wv~~~l~a~~~~~rs~ 248 (256)
T PF09788_consen 193 FARKRAIIFFLLGLLFLIIAIGLTVGTWTYAKTYGGIYVSWVGLFLIALICLIRSI 248 (256)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCcEeHHHHHHHHHHHHHHHHhh
Confidence 56666666666666665555555555444434433344444444667777777643
No 147
>PRK02946 aceK bifunctional isocitrate dehydrogenase kinase/phosphatase protein; Validated
Probab=27.50 E-value=1.4e+02 Score=31.54 Aligned_cols=97 Identities=19% Similarity=0.223 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 023714 98 SEEAWKQTLAAFREQAIKMQSVSQEAY-------------------EIYSKRATAILKETAEQLKIEAEKARKDLTVVAK 158 (278)
Q Consensus 98 s~E~Wkq~L~~fkeqa~kmq~~s~eaY-------------------~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ak 158 (278)
++..=+.+|+-|..+=...+.+|..|= +.|-.+ ..++.++|+...+....|-.....
T Consensus 6 a~~iA~~Il~GFd~~y~~F~~iT~~A~~rFE~adW~~~q~a~~~RI~lYd~~----V~~~v~~l~~~~~~~~~d~~~W~~ 81 (575)
T PRK02946 6 ALLIAQTILQGFDAHYARFREITAGAQQRFEQADWHAVQRAAKERIHLYDHR----VGEVVEQLRAELDAESTDDEFWQR 81 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccccCCHHHHHH
Confidence 344445566666655555555554443 344444 466778887655554444433222
Q ss_pred HhhhhhhhhHhHHhhcCchhhHHHhh-cCCCCcccccccccccceec
Q 023714 159 ELSEDGKKYLTEATENNPEVKEIVET-FTLPTEDVKEFSTLRDFYLG 204 (278)
Q Consensus 159 e~~e~gkeyl~~aaensp~vK~i~et-~~~~~e~~~~~skmHDFclg 204 (278)
=|........|.|. -||.|| |+|..-++-.+..+|++++-
T Consensus 82 -----vK~~Y~~ll~~~~~-~EiAETFfNSV~~rlf~~~~~~~d~~F 122 (575)
T PRK02946 82 -----VKLHYIGLLPDHPQ-PELAETFFNSVYCRLFHHRYFDNDFLF 122 (575)
T ss_pred -----HHHHHHHHHcCCCc-hhHHHHHHHHhhhhhcccCcccCceEE
Confidence 24445556667773 489999 56666577777788877753
No 148
>PRK09110 flagellar motor protein MotA; Validated
Probab=27.48 E-value=2.4e+02 Score=26.79 Aligned_cols=66 Identities=12% Similarity=0.163 Sum_probs=39.7
Q ss_pred hhHhHHhh--cCc-hhhHHHhh-cCCCCcccccccccccceec--hhHHHHHHHhhHHHHHhcC--ChhHHHHH
Q 023714 166 KYLTEATE--NNP-EVKEIVET-FTLPTEDVKEFSTLRDFYLG--IPYGLLLTLGGFISFMVTG--SIPAIRFG 231 (278)
Q Consensus 166 eyl~~aae--nsp-~vK~i~et-~~~~~e~~~~~skmHDFclg--ipYG~Lva~GGiiGY~kaG--S~~SL~aG 231 (278)
.++.+++. .+| .++|+.|+ .....+...+.+++-+.+-+ -.||++-++.|++.-+.+= +...|..|
T Consensus 128 ~gl~l~vdgg~~~~~i~~iLe~ei~~~~~~~~~~~~v~~~~g~~aPa~GiiGtv~GLI~~l~~l~~dp~~iG~~ 201 (283)
T PRK09110 128 DYLRLMISGNMNPHEIEALMDEEIETHHHEAEVPAHALQKVADALPAFGIVAAVLGVVKTMGSIDQPPAVLGAL 201 (283)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 55667774 566 89999998 44434344444444444433 2478888888888877652 45444333
No 149
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=27.25 E-value=1.2e+02 Score=26.07 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=15.0
Q ss_pred hhHHHHHhc-CChhHHHHHHHHHHHHHHHHHhhhhhhc
Q 023714 214 GGFISFMVT-GSIPAIRFGVILGGTLLALSIASLRSHK 250 (278)
Q Consensus 214 GGiiGY~ka-GS~~SL~aGl~~G~lLL~aGygSLk~~k 250 (278)
|.++|+... +...++.+| ++|. ++||+-.|.+.
T Consensus 92 ga~l~~~~~~~e~~~~~~~-~~g~---~~g~~~~r~~~ 125 (154)
T PRK10862 92 GAALFQLLFGSDLAALCGA-LLGG---VGGFLLARGLS 125 (154)
T ss_pred HHHHHHHHhcchHHHHHHH-HHHH---HHHHHHHHHHH
Confidence 445555443 344433332 2333 35666665443
No 150
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=27.09 E-value=3.7e+02 Score=26.24 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=9.4
Q ss_pred HHHHHHHHHhhHHHHHHHH
Q 023714 141 QLKIEAEKARKDLTVVAKE 159 (278)
Q Consensus 141 ~L~iqa~ka~~~L~~~ake 159 (278)
.|+.+.+.+++.+..+.+-
T Consensus 359 ~L~Re~~~~~~~Y~~l~~r 377 (498)
T TIGR03007 359 QLNRDYEVNKSNYEQLLTR 377 (498)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555554444443
No 151
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=27.08 E-value=2.1e+02 Score=24.89 Aligned_cols=56 Identities=21% Similarity=0.278 Sum_probs=34.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhhHH
Q 023714 94 SAKESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRA-----------TAILKETAEQLKIEAEKARKDL 153 (278)
Q Consensus 94 ~~ees~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka-----------~~vL~etse~L~iqa~ka~~~L 153 (278)
+.+...|+|++.++..+.+ -.++++-+++-.+=. ...+.-+-|+|+.|.++|+++-
T Consensus 81 ~g~s~~~~w~~~~~~~~~~----~~L~~~d~eiL~~lG~~LG~~D~e~Q~k~i~L~~~~L~~~~~~a~~~~ 147 (170)
T TIGR02833 81 EGLTVYEAWKKALNEVWKQ----TALQKSEKEILLQFGKTLGESDREGQQKHINLTLEHLERQLTEAEDEQ 147 (170)
T ss_pred CCCCHHHHHHHHHHHhhhc----cCCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999887532 344555444432211 1345667777777777777553
No 152
>PF11660 DUF3262: Protein of unknown function (DUF3262); InterPro: IPR021676 This entry represents small, hydrophobic proteins that are found occasionally on plasmids such as the Pseudomonas putida TOL (toluene catabolic) plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=26.98 E-value=2.6e+02 Score=21.60 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=28.4
Q ss_pred hcCChhHHHHHHHHHHHHHHHHH---hhhhhhcCCCCchhHHHHH
Q 023714 221 VTGSIPAIRFGVILGGTLLALSI---ASLRSHKKGKTSPVALKGQ 262 (278)
Q Consensus 221 kaGS~~SL~aGl~~G~lLL~aGy---gSLk~~k~gk~s~l~L~~S 262 (278)
.-+...-++.|+++..+++.+.+ ..||-|.+++.........
T Consensus 16 ~p~~l~~li~g~~~avllLW~aWa~~~~y~Gw~~~~v~~~~~~~~ 60 (76)
T PF11660_consen 16 TPSQLSLLILGILFAVLLLWAAWALWSAYRGWANGKVDFRDFLSF 60 (76)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34455567788888888887766 6778888887665444433
No 153
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23.
Probab=26.66 E-value=3.1e+02 Score=23.87 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=17.7
Q ss_pred ceechhHHHHHHHhhHHHHHh
Q 023714 201 FYLGIPYGLLLTLGGFISFMV 221 (278)
Q Consensus 201 FclgipYG~Lva~GGiiGY~k 221 (278)
|..|..|..=.++||+.|+++
T Consensus 36 ~~~G~ay~~G~~~Gg~~Gl~~ 56 (149)
T TIGR00983 36 FGTGTCYLTGLAIGALNGLRL 56 (149)
T ss_pred hhHhHHHHHHHHHHHHHHHHH
Confidence 456788888899999998887
No 154
>PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function.
Probab=26.65 E-value=1.6e+02 Score=30.14 Aligned_cols=70 Identities=17% Similarity=0.290 Sum_probs=44.9
Q ss_pred HHhhcCchhhHHHhhcCCCCcccccccccccceechhHHHHHHHhhHHHHHhcCChhHHHHHHHHHHH------------
Q 023714 170 EATENNPEVKEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGT------------ 237 (278)
Q Consensus 170 ~aaensp~vK~i~et~~~~~e~~~~~skmHDFclgipYG~Lva~GGiiGY~kaGS~~SL~aGl~~G~l------------ 237 (278)
.+.-+||.||.+.+.+.+...++... |....+++.+.+|+-- .+|+++|++
T Consensus 72 ~~lA~sp~v~r~l~~lA~~p~t~~~A-----------i~lv~~vs~i~s~inW------G~gLV~gallArelarr~~~v 134 (453)
T PF02667_consen 72 YALASSPPVKRLLDRLASLPKTPRQA-----------IVLVALVSMIASWINW------GFGLVVGALLARELARRVKGV 134 (453)
T ss_pred HHHhCChHHHHHHHHHHhcCCCCcce-----------eeHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHhccCC
Confidence 35568999999999998876555432 2334455566666544 456666654
Q ss_pred ----HHHHHHhhhhhhcCCCCch
Q 023714 238 ----LLALSIASLRSHKKGKTSP 256 (278)
Q Consensus 238 ----LL~aGygSLk~~k~gk~s~ 256 (278)
|.+++|..+-.|..|-++.
T Consensus 135 dYpllvAaaY~g~~vWh~GlSgS 157 (453)
T PF02667_consen 135 DYPLLVAAAYSGFVVWHGGLSGS 157 (453)
T ss_pred cHHHHHHHHHHHHHHHhccccch
Confidence 4566777777777765543
No 155
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=26.63 E-value=1.9e+02 Score=28.45 Aligned_cols=48 Identities=21% Similarity=0.302 Sum_probs=32.0
Q ss_pred cccceechhHHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHhhh
Q 023714 198 LRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASL 246 (278)
Q Consensus 198 mHDFclgipYG~Lva~GGiiGY~kaGS~~SL~aGl~~G~lLL~aGygSL 246 (278)
+.=..+|+| |+++++.++.-.+--...+--+.-++.|+.+++=|++-.
T Consensus 158 ~~~~~lGvP-G~~lLiy~i~~l~~~~~~a~~~i~~~iG~yll~kGfgld 205 (344)
T PF04123_consen 158 YRRTFLGVP-GLILLIYAILALLGYPAYALGIILLLIGLYLLYKGFGLD 205 (344)
T ss_pred hhceeecch-HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhcCcH
Confidence 344679999 999999988777665443333444556666676676644
No 156
>PRK14788 lipoprotein signal peptidase; Provisional
Probab=26.59 E-value=1.2e+02 Score=27.56 Aligned_cols=17 Identities=0% Similarity=-0.394 Sum_probs=10.2
Q ss_pred CchhHHHHHHHHHHHHH
Q 023714 254 TSPVALKGQAGQRVVYF 270 (278)
Q Consensus 254 ~s~l~L~~SavLAavm~ 270 (278)
+.+..+..++++++++|
T Consensus 87 ~~~~~ial~LIlGGAiG 103 (200)
T PRK14788 87 SKGLIICISLILAGAIG 103 (200)
T ss_pred cHHHHHHHHHHHHHHhh
Confidence 33444566677777764
No 157
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=26.56 E-value=4.1e+02 Score=26.87 Aligned_cols=88 Identities=20% Similarity=0.284 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHH---------------HHHHHHHHHHHHHHHH----HHHHHhhHHHHHHHHh
Q 023714 100 EAWKQTLAAFREQAIKMQSVSQEAYEIYS---------------KRATAILKETAEQLKI----EAEKARKDLTVVAKEL 160 (278)
Q Consensus 100 E~Wkq~L~~fkeqa~kmq~~s~eaY~vys---------------~ka~~vL~etse~L~i----qa~ka~~~L~~~ake~ 160 (278)
+..++.++-+|+.+..+.++.....-.|. +.++.+|++..+.|.. .+|..+..+..++++.
T Consensus 353 ~~~~~~~~l~~~~~~~l~d~~~~~~~ff~~~~~~~~~~~~~~l~~~~~~~L~~l~~~L~~l~~~~~e~i~~~i~~iak~~ 432 (476)
T PRK01406 353 PYLEKVVPLLKERAKTLKELAELARFFFEDFPEYDEDAAKKHLKEVAREVLEALLEKLEALEEWTAEAIEAAIKAVAEEL 432 (476)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhcCCcccChHHHHHhcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 44577788888888888877765533332 2235566666666643 2455666777777777
Q ss_pred hhhhhhhHhH------HhhcCchhhHHHhhcCC
Q 023714 161 SEDGKKYLTE------ATENNPEVKEIVETFTL 187 (278)
Q Consensus 161 ~e~gkeyl~~------aaensp~vK~i~et~~~ 187 (278)
+-++++...- =..+.|++-++.+.++-
T Consensus 433 gik~k~lf~pLR~ALtG~~~GP~L~~il~lLGk 465 (476)
T PRK01406 433 GLKGGKLFMPLRVALTGRTVGPPLFESMELLGK 465 (476)
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHhCH
Confidence 7777764322 13566677777666543
No 158
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=26.39 E-value=2.1e+02 Score=23.26 Aligned_cols=69 Identities=7% Similarity=-0.048 Sum_probs=47.1
Q ss_pred HhhcCCCCcccccccccccceechhHHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHhhhhhhcCCC
Q 023714 182 VETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGK 253 (278)
Q Consensus 182 ~et~~~~~e~~~~~skmHDFclgipYG~Lva~GGiiGY~kaGS~~SL~aGl~~G~lLL~aGygSLk~~k~gk 253 (278)
.+|.-..+++.+..-..|=..+++.+.++.=+|=+++-+++ ..-+ .-.+.+.++..+|+.....+++..
T Consensus 4 ~~tyf~~~~~~~~~l~~Hi~lm~la~~il~Pi~lvL~~~~s--r~~~-~~q~~~~~l~~~g~~~g~~~~~~~ 72 (105)
T PF10348_consen 4 TTTYFTSPSPHRSALYAHIVLMTLAWVILYPIGLVLGNARS--RWHL-PVQTVFLVLMILGLFLGSVYNGST 72 (105)
T ss_pred CcchhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHccc--hHHH-HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34544445457778889999999999999999999888774 3322 335556666667776666655543
No 159
>PRK08990 flagellar motor protein PomA; Reviewed
Probab=26.17 E-value=2.4e+02 Score=26.34 Aligned_cols=106 Identities=17% Similarity=0.170 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhh-----cCc-hhhHHHhhcCC-CCcccccccccccceechh--H
Q 023714 137 ETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATE-----NNP-EVKEIVETFTL-PTEDVKEFSTLRDFYLGIP--Y 207 (278)
Q Consensus 137 etse~L~iqa~ka~~~L~~~ake~~e~gkeyl~~aae-----nsp-~vK~i~et~~~-~~e~~~~~skmHDFclgip--Y 207 (278)
|.-+++-..++|||++ +-+|=|.-+--..++..+.+ ++| .++|+.|.-.. ..+...+..++-+-+-++. +
T Consensus 75 ~~i~~l~~la~~aR~~-GllaLE~~~i~d~f~~~~l~l~vdg~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~a~~aP~l 153 (254)
T PRK08990 75 DLIEQIVEMADAARKG-GFLALEEAEISNSFMQKGVDLLVDGHDGDVVRAALEKDIALTEERHETGIGIFRAFGDVAPAM 153 (254)
T ss_pred HHHHHHHHHHHHHhhc-cHhhhhccccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHhHHH
Confidence 4555566666666654 22332321111244443332 355 89999887433 2333444444444443333 6
Q ss_pred HHHHHHhhHHHHHhc-CChhHHHHHHHHHHHHHHHHHhh
Q 023714 208 GLLLTLGGFISFMVT-GSIPAIRFGVILGGTLLALSIAS 245 (278)
Q Consensus 208 G~Lva~GGiiGY~ka-GS~~SL~aGl~~G~lLL~aGygS 245 (278)
|++=++-|++.-+.. ++. +.+++ ..+.+|+.-.||.
T Consensus 154 GllGTVlGlI~~~~~l~~p-~~lg~-gIa~ALitT~yGl 190 (254)
T PRK08990 154 GMIGTLIGLVAMLSNMDDP-KSIGP-AMAVALLTTLYGA 190 (254)
T ss_pred HHHHHHHHHHHHHHhccCH-HHHHH-HHHHHHHHHHHHH
Confidence 666666666664444 444 44433 3444445555543
No 160
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=25.95 E-value=5.8e+02 Score=24.28 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 023714 121 QEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKE 159 (278)
Q Consensus 121 ~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake 159 (278)
+..|+---++.+.=|.+|+++.+--.+++++|+-.+.++
T Consensus 66 qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~ 104 (230)
T PF03904_consen 66 QDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQD 104 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667777778888888888888888888776654
No 161
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=25.90 E-value=4e+02 Score=22.43 Aligned_cols=37 Identities=11% Similarity=0.080 Sum_probs=13.9
Q ss_pred hhhcChhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 023714 90 EIKASAKESEEAWKQTLAAFREQAIKMQSVSQEAYEI 126 (278)
Q Consensus 90 ~~~~~~ees~E~Wkq~L~~fkeqa~kmq~~s~eaY~v 126 (278)
.+..+-+++++.=++.-+.-.+--.+++..-.||-++
T Consensus 57 ~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~i 93 (156)
T CHL00118 57 YIRKNLTKASEILAKANELTKQYEQELSKARKEAQLE 93 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444433333222222223444444444333
No 162
>TIGR02758 TraA_TIGR type IV conjugative transfer system pilin TraA. TraA is the single structural subunit of the pilus found in type IV conjugative transfer systems. This family is generally found in gammaproteobacteria. The pilins show considerable heterogeneity among the different conjugative plasmit types. All of them however contain an N-terminal part which is cleaved off by a leader peptidase (LepB, or similar) to result in a 68-78 amino acid product. Pilins may be further processed by acetylation (in F-like systems by the TraX protein) or by cyclization (in P-like systems by the TraF protein).
Probab=25.40 E-value=39 Score=27.94 Aligned_cols=31 Identities=16% Similarity=-0.005 Sum_probs=24.9
Q ss_pred HHhhHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 023714 212 TLGGFISFMVTGSIPAIRFGVILGGTLLALS 242 (278)
Q Consensus 212 a~GGiiGY~kaGS~~SL~aGl~~G~lLL~aG 242 (278)
+++|++.|+++.|...++.|++.|.+..-.+
T Consensus 57 v~~~~~~y~~TkN~~~~igGf~~~~IF~~Vg 87 (93)
T TIGR02758 57 LLVAAVMGFMTKNWFAALGGFAGGSIFWNVG 87 (93)
T ss_pred HHHHHHHHHhhccHHHHHhhheeEeehhhhh
Confidence 4678899999999999999998887754433
No 163
>PF11638 DnaA_N: DnaA N-terminal domain; InterPro: IPR024633 The bacterial DnaA protein [, , ] plays an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) []. This entry represents the N-terminal domain of DnaA. This domain is monomeric in solution and has a hydrophobic cleft flanked by several negative residues on one side and positive residues on the other [].; GO: 0005524 ATP binding; PDB: 2JMP_A 2E0G_A.
Probab=25.39 E-value=58 Score=23.14 Aligned_cols=23 Identities=22% Similarity=0.758 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 023714 99 EEAWKQTLAAFREQAIKMQSVSQEAYEIY 127 (278)
Q Consensus 99 ~E~Wkq~L~~fkeqa~kmq~~s~eaY~vy 127 (278)
|+.|.++|+.+|++ ++.++|+.+
T Consensus 1 ~~~W~~vl~~lk~~------l~~~~f~tW 23 (65)
T PF11638_consen 1 EEIWEKVLERLKKE------LSEQSFNTW 23 (65)
T ss_dssp -HHHHHHHHHHHHH------TSS-HHHHT
T ss_pred CcHHHHHHHHHHHH------CCHHHHHHH
Confidence 57899999999954 566667654
No 164
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=25.26 E-value=3e+02 Score=25.80 Aligned_cols=51 Identities=20% Similarity=0.196 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023714 98 SEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEK 148 (278)
Q Consensus 98 s~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~k 148 (278)
+-..|+++.+.+.++-.++..-..+.|..+.++-..-|++.-.+++.+...
T Consensus 150 dp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~l~~ 200 (311)
T PRK09545 150 SPEIARATAVAIHDKLVELMPQSKAKLDANLKDFEAQLAQTDKQIGNQLAP 200 (311)
T ss_pred CHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456789999999999999998888888888888666666666666655443
No 165
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=25.19 E-value=3.2e+02 Score=20.96 Aligned_cols=67 Identities=36% Similarity=0.406 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhh
Q 023714 97 ESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKK 166 (278)
Q Consensus 97 es~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e~gke 166 (278)
+++..=+++++.-+++|.++. .++-+-=-+.|..++.++-++...+.+++..++..-...+...|.+
T Consensus 17 ~A~~ea~~Ii~~A~~~A~~~~---~~a~~~A~~ea~~ii~~Ak~ei~~e~~~a~~e~k~ev~~L~~~~~~ 83 (85)
T TIGR02926 17 EAEEERKQRIAEAREEARELL---EEAEEEASKLGEEIIKEAEEEIEKEAEKIREEGEKEIEAMKSKAKE 83 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 455556667777776666653 3444445566777888888888888888888887777777666554
No 166
>PHA01080 hypothetical protein
Probab=25.01 E-value=71 Score=25.90 Aligned_cols=25 Identities=16% Similarity=0.064 Sum_probs=17.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHhh-hhhh
Q 023714 224 SIPAIRFGVILGGTLLALSIAS-LRSH 249 (278)
Q Consensus 224 S~~SL~aGl~~G~lLL~aGygS-Lk~~ 249 (278)
--++-++|++||.+ +++||.| |++.
T Consensus 47 t~~~qaFglgF~~V-~~lgyls~YaVk 72 (80)
T PHA01080 47 TDAGTAFSFGFMAV-FALGYLSTYAVY 72 (80)
T ss_pred HHHHHHHhhhHHHH-HHhhhhHHHHHH
Confidence 34567889999887 6678877 6553
No 167
>COG4395 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.73 E-value=1.9e+02 Score=28.04 Aligned_cols=24 Identities=29% Similarity=0.599 Sum_probs=16.8
Q ss_pred HhhHHHHHhcCChhHHHHHHHHHHH
Q 023714 213 LGGFISFMVTGSIPAIRFGVILGGT 237 (278)
Q Consensus 213 ~GGiiGY~kaGS~~SL~aGl~~G~l 237 (278)
.||++|-+.-| +.++.+|.+|+++
T Consensus 33 ~g~l~ggl~~g-l~~~~~~~~f~gi 56 (281)
T COG4395 33 LGGLAGGLLMG-LSGMFFGGLFFGI 56 (281)
T ss_pred hhHHHHHHHHh-HHHHHHHHHHHHH
Confidence 47777777777 6666666666665
No 168
>PRK13954 mscL large-conductance mechanosensitive channel; Provisional
Probab=24.58 E-value=83 Score=26.82 Aligned_cols=25 Identities=20% Similarity=0.562 Sum_probs=21.3
Q ss_pred hhHHHHHhcCChhHHHHHHHHHHHH
Q 023714 214 GGFISFMVTGSIPAIRFGVILGGTL 238 (278)
Q Consensus 214 GGiiGY~kaGS~~SL~aGl~~G~lL 238 (278)
-|+--|+.+|++.-|+.|++.|++.
T Consensus 3 keFk~Fi~rGNVidLAVaVvIG~AF 27 (119)
T PRK13954 3 KEFKEFALKGNVLDLAIAVVMGAAF 27 (119)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3677889999999999999999873
No 169
>PRK10209 acid-resistance membrane protein; Provisional
Probab=24.49 E-value=2.7e+02 Score=24.41 Aligned_cols=15 Identities=27% Similarity=0.645 Sum_probs=6.2
Q ss_pred HHHHHHHhhHHHHHh
Q 023714 207 YGLLLTLGGFISFMV 221 (278)
Q Consensus 207 YG~Lva~GGiiGY~k 221 (278)
.|.+..+.|++.++.
T Consensus 27 ~Gil~ivlGi~~l~~ 41 (190)
T PRK10209 27 IAVLLFIGGLLCLSF 41 (190)
T ss_pred HHHHHHHHHHHHHHh
Confidence 344444444444433
No 170
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=24.48 E-value=3.3e+02 Score=23.96 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=10.3
Q ss_pred ceechhHHHHHH-HhhHHHHHh
Q 023714 201 FYLGIPYGLLLT-LGGFISFMV 221 (278)
Q Consensus 201 FclgipYG~Lva-~GGiiGY~k 221 (278)
..+|-.||++++ ++.+++++.
T Consensus 43 vllGP~~g~~~a~i~~ll~~l~ 64 (160)
T TIGR02359 43 VLLGPWYALAVAFIIGLLRNTL 64 (160)
T ss_pred HHHchHHHHHHHHHHHHHHHHh
Confidence 345555555543 344555553
No 171
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=24.37 E-value=1.4e+02 Score=25.18 Aligned_cols=39 Identities=18% Similarity=0.172 Sum_probs=28.4
Q ss_pred ceechhHHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHH
Q 023714 201 FYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLL 239 (278)
Q Consensus 201 FclgipYG~Lva~GGiiGY~kaGS~~SL~aGl~~G~lLL 239 (278)
+.++|+.|++++.|...+.+..--.-++-+|....++|+
T Consensus 5 dvl~Iglgv~~~Gg~~Y~~l~~~G~d~~~AGi~sq~~lv 43 (104)
T PF11460_consen 5 DVLLIGLGVFLLGGLLYGGLQAAGLDSLSAGIWSQALLV 43 (104)
T ss_pred ceeeecHHHHHHHHHHHHHHHHcCCCchhhhHHHHHHHH
Confidence 356788888887777777777777777888877776543
No 172
>PRK05715 NADH:ubiquinone oxidoreductase subunit K; Validated
Probab=24.29 E-value=3.1e+02 Score=21.43 Aligned_cols=27 Identities=7% Similarity=0.203 Sum_probs=21.0
Q ss_pred HHHHHHHhhHHHHHhcCChhHHHHHHH
Q 023714 207 YGLLLTLGGFISFMVTGSIPAIRFGVI 233 (278)
Q Consensus 207 YG~Lva~GGiiGY~kaGS~~SL~aGl~ 233 (278)
-++++..-|+.|++.+.+......|+=
T Consensus 10 ~~~~lf~iGl~~~~~~~~li~~Ll~lE 36 (100)
T PRK05715 10 LAAILFCIGLVGLLLRRNAIVVLMSIE 36 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667779999999888888877753
No 173
>COG1556 Uncharacterized conserved protein [Function unknown]
Probab=24.17 E-value=86 Score=29.24 Aligned_cols=42 Identities=14% Similarity=0.217 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 023714 97 ESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQ 141 (278)
Q Consensus 97 es~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~ 141 (278)
..+=.|.+.++.||+++.+|. .+-++.-+...++|+++.-|.
T Consensus 30 ~~~~s~~~~~~~~k~~~~~~~---ae~~~t~~~~l~~vi~e~~~~ 71 (218)
T COG1556 30 LAKLSTDDLVEEFKHFASDVS---AECIETSKSELEEVIREALEE 71 (218)
T ss_pred ccccchHHHHHHHHHHHHHhh---hheeeccHhhHHHHHHHHHHh
Confidence 456679999999999999887 667777777777777766544
No 174
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=24.09 E-value=1.8e+02 Score=29.61 Aligned_cols=74 Identities=14% Similarity=0.280 Sum_probs=47.9
Q ss_pred hhhhhcChhhHHHHHHHHHHH---HHHHHHHhhhhhHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhhHHHH
Q 023714 88 SSEIKASAKESEEAWKQTLAA---FREQAIKMQSVSQEAYEIYSKRATAILKET---------AEQLKIEAEKARKDLTV 155 (278)
Q Consensus 88 ~~~~~~~~ees~E~Wkq~L~~---fkeqa~kmq~~s~eaY~vys~ka~~vL~et---------se~L~iqa~ka~~~L~~ 155 (278)
..-.+..++++++.|+++-+. |.++..+|..++++-.+.|.+ ....|..- -.+++.+..+.|+-|..
T Consensus 292 ~~~~~~~p~~s~~i~~~l~~aN~~~~~~l~~l~~~~~~~~~~y~~-~~~~l~~~~~~~~~~~~~~~i~~~i~~~R~~Lr~ 370 (454)
T TIGR01219 292 KKWQMSDPEESRENWQNLSDANLELETKLNDLSKLAKDHWDVYLR-VIKVLTSEKCVLHATEELLEAREAMLRIRRLMRQ 370 (454)
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccchhhh-hhhhhccccchhcccccHHHHHHHHHHHHHHHHH
Confidence 445567789999999999887 777777777666544444433 23333321 34467777777777777
Q ss_pred HHHHhhh
Q 023714 156 VAKELSE 162 (278)
Q Consensus 156 ~ake~~e 162 (278)
+.++.|.
T Consensus 371 ~~~~sgv 377 (454)
T TIGR01219 371 ITEEASV 377 (454)
T ss_pred hhHhcCC
Confidence 7766543
No 175
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=24.02 E-value=2.3e+02 Score=22.38 Aligned_cols=74 Identities=12% Similarity=0.246 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHhhhhhhhhHhHHhhcCc---
Q 023714 103 KQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEK---ARKDLTVVAKELSEDGKKYLTEATENNP--- 176 (278)
Q Consensus 103 kq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~k---a~~~L~~~ake~~e~gkeyl~~aaensp--- 176 (278)
+++|++.++|..+...++.+ .+.+|.+.-++++.+... ....-..++..+.. -+..-.+++|
T Consensus 3 ~~~L~~L~~eL~~~~~ld~~--------~~~~L~~l~~dIe~~L~~~~~~~~~~~~l~d~l~~----av~~FE~~HP~l~ 70 (85)
T PF14357_consen 3 QELLEKLHQELEQNPPLDEE--------TRAELSSLDDDIEAQLAEEDEAEAEDESLVDRLNE----AVERFEASHPKLA 70 (85)
T ss_pred HHHHHHHHHHHhcCCCCCHH--------HHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHH----HHHHHHHhCCcHH
Confidence 67888999888888777654 344555555555554443 11111112222211 2224456677
Q ss_pred -hhhHHHhhcCCC
Q 023714 177 -EVKEIVETFTLP 188 (278)
Q Consensus 177 -~vK~i~et~~~~ 188 (278)
.+++|+.|+.+-
T Consensus 71 ~~lr~i~~sLa~M 83 (85)
T PF14357_consen 71 GILRNIMDSLANM 83 (85)
T ss_pred HHHHHHHHHHHHC
Confidence 566777666543
No 176
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=23.99 E-value=5e+02 Score=29.70 Aligned_cols=89 Identities=22% Similarity=0.231 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhhcC-c
Q 023714 98 SEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENN-P 176 (278)
Q Consensus 98 s~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e~gkeyl~~aaens-p 176 (278)
.+++-++-....++|.++|..|-.+|-.---|+-++.+..-+..||.+.+|.+.+=....|.+-.+ -|-.....|-+ .
T Consensus 1050 ~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~kkr~e~ik~~~~~kdK-~e~er~~rE~n~s 1128 (1189)
T KOG1265|consen 1050 YEEEFELKEEHLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDKKRMEDIKVDKVIKDK-AERERRKRELNSS 1128 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccH-HHHHHHHHHHHHH
Confidence 334444445556666666666666665555555555554444445554444443222212222221 12222334433 3
Q ss_pred hhhHHHhhcCC
Q 023714 177 EVKEIVETFTL 187 (278)
Q Consensus 177 ~vK~i~et~~~ 187 (278)
.||+.|+...-
T Consensus 1129 ~i~~~V~e~kr 1139 (1189)
T KOG1265|consen 1129 NIKEFVEERKR 1139 (1189)
T ss_pred HHHHHHHHHHH
Confidence 66666665443
No 177
>PF13664 DUF4149: Domain of unknown function (DUF4149)
Probab=23.92 E-value=3.3e+02 Score=20.73 Aligned_cols=20 Identities=10% Similarity=0.149 Sum_probs=13.5
Q ss_pred eechhHHHHHHHhhHHHHHh
Q 023714 202 YLGIPYGLLLTLGGFISFMV 221 (278)
Q Consensus 202 clgipYG~Lva~GGiiGY~k 221 (278)
|+++-.|..+..+-+++.+.
T Consensus 2 ~~~~w~G~~~~~~fvvap~l 21 (101)
T PF13664_consen 2 LLALWLGSMVFFTFVVAPVL 21 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55666777777776666654
No 178
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=23.91 E-value=3.1e+02 Score=23.46 Aligned_cols=48 Identities=25% Similarity=0.281 Sum_probs=36.2
Q ss_pred cceechhHHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHhhhh
Q 023714 200 DFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLR 247 (278)
Q Consensus 200 DFclgipYG~Lva~GGiiGY~kaGS~~SL~aGl~~G~lLL~aGygSLk 247 (278)
|.=...++....+.|.++|.......+.-..-.++|..+++.++..+.
T Consensus 62 ~~~~~~~~~~~~~~g~~iG~~l~~~l~~~~l~~~~~~~ll~~~~~~~~ 109 (240)
T PF01925_consen 62 DWKIVLPLIIGALIGVVIGAWLLSLLPDDILKLIFGLFLLLLAIYMLL 109 (240)
T ss_pred chhhhhhhhhHhHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHh
Confidence 555677888888899999988887777667777788877776665544
No 179
>PRK01100 putative accessory gene regulator protein; Provisional
Probab=23.83 E-value=3.4e+02 Score=24.33 Aligned_cols=69 Identities=25% Similarity=0.191 Sum_probs=48.8
Q ss_pred ceechhHHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHhhhhhhcCC---CCchhHHHHHHHHHHHHH
Q 023714 201 FYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKG---KTSPVALKGQAGQRVVYF 270 (278)
Q Consensus 201 FclgipYG~Lva~GGiiGY~kaGS~~SL~aGl~~G~lLL~aGygSLk~~k~g---k~s~l~L~~SavLAavm~ 270 (278)
...-+-||+-+.++.++.++..= ..+++.|.+.-+++..+++..+|.+--| ++++..+..+.++-.++.
T Consensus 32 ~~~~i~YGl~~il~~i~k~i~il-~i~~i~g~~~~tli~~l~f~~lR~~aGG~Ha~s~~~C~I~S~iifv~~~ 103 (210)
T PRK01100 32 GYLKVKYGLEIILINVSKFAIVY-LIALVTGLLLQTVTVHLSFLWLRRYSFGLHATNSINCTLISLTMFVLGA 103 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHChHHHHHHHHHHHHHHHhccCceecCCCcHHHHHHHHHHHHHH
Confidence 44457899999998888776543 3456667777777888899999988887 466677666666544443
No 180
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=23.82 E-value=5.8e+02 Score=23.53 Aligned_cols=28 Identities=14% Similarity=0.264 Sum_probs=17.6
Q ss_pred hhhcChhhHHHHHHHHHHHHHHHHHHhh
Q 023714 90 EIKASAKESEEAWKQTLAAFREQAIKMQ 117 (278)
Q Consensus 90 ~~~~~~ees~E~Wkq~L~~fkeqa~kmq 117 (278)
+.+.+.++..+..++-|...++++..|-
T Consensus 50 ~~~~eA~~~~~e~e~~l~~a~~ea~~ii 77 (250)
T PRK14474 50 QRQQEAGQEAERYRQKQQSLEQQRASFM 77 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566677777777777776653
No 181
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=23.61 E-value=1.9e+02 Score=21.94 Aligned_cols=39 Identities=13% Similarity=-0.031 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhhhh---------hcCCCCchhHHHHHHHHHHHHHH
Q 023714 233 ILGGTLLALSIASLRS---------HKKGKTSPVALKGQAGQRVVYFT 271 (278)
Q Consensus 233 ~~G~lLL~aGygSLk~---------~k~gk~s~l~L~~SavLAavm~~ 271 (278)
+.|.+|++-||-+++. .-++.+...+...-.+++.+.++
T Consensus 9 v~GivLl~~G~~~~~S~~s~~s~~~TG~~t~~t~~~ligG~va~ivGl 56 (59)
T PF11381_consen 9 VGGIVLLYFGYQASDSLGSQVSRAFTGSPTDKTIWYLIGGAVAVIVGL 56 (59)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHhcCCCCchhHHHHHhHHHHHHHHH
Confidence 4455666666655543 23344444555555566666554
No 182
>PRK13953 mscL large-conductance mechanosensitive channel; Provisional
Probab=23.55 E-value=90 Score=26.81 Aligned_cols=25 Identities=20% Similarity=0.521 Sum_probs=20.6
Q ss_pred hhHHHHHhcCChhHHHHHHHHHHHH
Q 023714 214 GGFISFMVTGSIPAIRFGVILGGTL 238 (278)
Q Consensus 214 GGiiGY~kaGS~~SL~aGl~~G~lL 238 (278)
-|+-.|+.+|++.-|..|++.|++.
T Consensus 3 ~eFk~Fi~rGNVidLAVavIiG~AF 27 (125)
T PRK13953 3 VEFRDFALKGNVLDLAVAVVIGAAF 27 (125)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3667788999999999999998873
No 183
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=23.53 E-value=1.2e+02 Score=26.09 Aligned_cols=48 Identities=17% Similarity=0.222 Sum_probs=26.6
Q ss_pred ccccccccceechhHHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 023714 193 KEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALS 242 (278)
Q Consensus 193 ~~~skmHDFclgipYG~Lva~GGiiGY~kaGS~~SL~aGl~~G~lLL~aG 242 (278)
+++-+++-|-+.+.++++...= +|++...+..-....+++|.+.+.++
T Consensus 6 ~KiN~~R~~al~lif~g~~vmy--~gi~f~~~~~im~ifmllG~L~~l~S 53 (114)
T PF11023_consen 6 SKINKIRTFALSLIFIGMIVMY--IGIFFKASPIIMVIFMLLGLLAILAS 53 (114)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh--hhhhhcccHHHHHHHHHHHHHHHHHH
Confidence 3455566665555555443322 36666777665566667776544433
No 184
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=23.40 E-value=2.5e+02 Score=27.27 Aligned_cols=12 Identities=25% Similarity=0.479 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHh
Q 023714 105 TLAAFREQAIKM 116 (278)
Q Consensus 105 ~L~~fkeqa~km 116 (278)
.||.+++...+|
T Consensus 56 ~ld~~~~kl~~M 67 (301)
T PF06120_consen 56 SLDELKEKLKEM 67 (301)
T ss_pred hhHHHHHHHHhc
Confidence 344444333333
No 185
>PF11780 DUF3318: Protein of unknown function (DUF3318); InterPro: IPR021751 This is a bacterial family of uncharacterised proteins.
Probab=23.39 E-value=1.2e+02 Score=26.43 Aligned_cols=23 Identities=13% Similarity=0.055 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhhhhhhcCCCCch
Q 023714 234 LGGTLLALSIASLRSHKKGKTSP 256 (278)
Q Consensus 234 ~G~lLL~aGygSLk~~k~gk~s~ 256 (278)
.|.++.++++..||+|++.++..
T Consensus 106 ~~la~Gla~~~~~riwq~~~~~~ 128 (146)
T PF11780_consen 106 WGLAGGLAAWAAYRIWQQNRSPQ 128 (146)
T ss_pred HHHHHHHHHHHHHHHHHHccCcc
Confidence 33344447888999999988743
No 186
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=23.34 E-value=4.5e+02 Score=23.54 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=15.8
Q ss_pred ccccceechhHHHHHHHhhHHHHHh
Q 023714 197 TLRDFYLGIPYGLLLTLGGFISFMV 221 (278)
Q Consensus 197 kmHDFclgipYG~Lva~GGiiGY~k 221 (278)
++-|+| +-.|.+=++.||+.|+++
T Consensus 12 r~~d~~-G~af~~G~~~G~~~g~~~ 35 (170)
T TIGR00980 12 RILDDF-GGAFAMGTIGGSIFQAFK 35 (170)
T ss_pred hhHHhh-hHHHHHHHHHHHHHHHHH
Confidence 344444 467777777888888774
No 187
>PF13828 DUF4190: Domain of unknown function (DUF4190)
Probab=23.34 E-value=3.3e+02 Score=20.49 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhhhhhhcCCC
Q 023714 232 VILGGTLLALSIASLRSHKKGK 253 (278)
Q Consensus 232 l~~G~lLL~aGygSLk~~k~gk 253 (278)
.++|.+-+.+|..+++.-++..
T Consensus 17 ~~~~i~aiilG~ial~~i~r~~ 38 (62)
T PF13828_consen 17 GLLGIVAIILGHIALRQIRRSG 38 (62)
T ss_pred HHhHHHHHHHHHHHHHHHhccC
Confidence 4666677778888998887744
No 188
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=23.14 E-value=4.8e+02 Score=22.36 Aligned_cols=78 Identities=24% Similarity=0.262 Sum_probs=47.1
Q ss_pred hhhcChhhHHHHHHHHHHHHHHHHHHhhhhh-HHH---HHHHHHHHHH----HHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 023714 90 EIKASAKESEEAWKQTLAAFREQAIKMQSVS-QEA---YEIYSKRATA----ILKETAEQLKIEAEKARKDLTVVAKELS 161 (278)
Q Consensus 90 ~~~~~~ees~E~Wkq~L~~fkeqa~kmq~~s-~ea---Y~vys~ka~~----vL~etse~L~iqa~ka~~~L~~~ake~~ 161 (278)
....+.+..++.-++-|+..|+||..|-.-. .+| .+...++|.. .+..+.+++..+.+++.++|..-+.++.
T Consensus 51 ~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~a~~e~~r~~~~a~~~I~~e~~~a~~~l~~~~~~la 130 (161)
T COG0711 51 RLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAEIEAEKERALEELRAEVAELA 130 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556677777777787777764332 223 2333334433 3445566777778888888888777777
Q ss_pred hhhhhh
Q 023714 162 EDGKKY 167 (278)
Q Consensus 162 e~gkey 167 (278)
..+-|-
T Consensus 131 ~~~aek 136 (161)
T COG0711 131 VAIAEK 136 (161)
T ss_pred HHHHHH
Confidence 655443
No 189
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=23.14 E-value=2.9e+02 Score=25.44 Aligned_cols=51 Identities=25% Similarity=0.276 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 023714 98 SEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELS 161 (278)
Q Consensus 98 s~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~ 161 (278)
.+|.|+-.. ++..+++....+=.+.|.++ -|+-..++||||+- +-+.|-++
T Consensus 13 ~~~~~~~~~----~~~~~~~~~~~~~~~e~~~~--------~~e~~~kaeeaqK~-Gi~~kIf~ 63 (306)
T PF04888_consen 13 SEESLKSKK----EQIERASEAQEKKAEEKAEE--------IEEAQEKAEEAQKA-GIFSKIFG 63 (306)
T ss_pred hHHHHHHHH----HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhc-ChHHHHHH
Confidence 344444433 33345666555555555555 22233445667765 55444443
No 190
>PF13315 DUF4085: Protein of unknown function (DUF4085)
Probab=23.04 E-value=4.9e+02 Score=24.19 Aligned_cols=51 Identities=22% Similarity=0.317 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhhcCc-hhhHHHhhcCC
Q 023714 136 KETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNP-EVKEIVETFTL 187 (278)
Q Consensus 136 ~etse~L~iqa~ka~~~L~~~ake~~e~gkeyl~~aaensp-~vK~i~et~~~ 187 (278)
.-.+++|+.++.+=.+|-...-+-+..+=++|....+++=| .|+++- ++.-
T Consensus 75 ~~~s~~l~~~~~ew~~~~~~~~~~~~~~Y~e~~~sI~~~lp~~v~ql~-~~sf 126 (208)
T PF13315_consen 75 DYPSEKLKKAITEWCEDYEKRVKRLCQAYYEYYNSIKEKLPQNVQQLF-NFSF 126 (208)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh-hccc
Confidence 34667777777777777776777777888888888999999 877765 4433
No 191
>PF09677 TrbI_Ftype: Type-F conjugative transfer system protein (TrbI_Ftype); InterPro: IPR014115 This entry represents TrbI, an essential component of the F-type conjugative transfer system for plasmid DNA transfer that has been shown to be localized to the periplasm [, ].
Probab=23.02 E-value=2.3e+02 Score=23.49 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 023714 102 WKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKET 138 (278)
Q Consensus 102 Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~et 138 (278)
=|+++++|.+|..+ .+++.|..+...++=+.-|.++
T Consensus 38 l~~tv~~f~~~~a~-~~lt~~q~~a~t~~F~~aL~~~ 73 (111)
T PF09677_consen 38 LKGTVDEFVQQLAR-SSLTPEQVEALTQRFMQALEAS 73 (111)
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHH
Confidence 36899999988776 7788888888888866666655
No 192
>PRK02935 hypothetical protein; Provisional
Probab=23.00 E-value=2.5e+02 Score=23.99 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=28.7
Q ss_pred cccccccccceechhHHHHH-HHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHh
Q 023714 192 VKEFSTLRDFYLGIPYGLLL-TLGGFISFMVTGSIPAIRFGVILGGTLLALSIA 244 (278)
Q Consensus 192 ~~~~skmHDFclgipYG~Lv-a~GGiiGY~kaGS~~SL~aGl~~G~lLL~aGyg 244 (278)
.+|+-+++-|-+.+.+.+++ .-+ |.+.+.|..=....+++|.+.+.++..
T Consensus 6 ssKINkiRt~aL~lvfiG~~vMy~---Giff~~~~~~m~ifm~~G~l~~l~S~v 56 (110)
T PRK02935 6 SNKINKIRTFALSLVFIGFIVMYL---GIFFRESIIIMTIFMLLGFLAVIASTV 56 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH---HHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 45566667665555554332 233 455566766566667777776665443
No 193
>PF05433 Rick_17kDa_Anti: Glycine zipper 2TM domain; InterPro: IPR008816 This domain includes a putative two transmembrane alpha-helical region that contains glycine zipper motifs []. The domain is found in several Rickettsia genus specific 17 kDa surface antigen proteins [].; GO: 0019867 outer membrane
Probab=22.99 E-value=1.5e+02 Score=20.82 Aligned_cols=26 Identities=15% Similarity=0.287 Sum_probs=15.1
Q ss_pred HHhhHHHHHh---cCChhHHHHHHHHHHH
Q 023714 212 TLGGFISFMV---TGSIPAIRFGVILGGT 237 (278)
Q Consensus 212 a~GGiiGY~k---aGS~~SL~aGl~~G~l 237 (278)
++|+++|... .+...+.+.|.+.|++
T Consensus 8 ~~Ga~~G~~ig~~~g~~~g~~~Ga~~Ga~ 36 (42)
T PF05433_consen 8 AVGAVAGSQIGGGNGRTLGAVAGAVAGAL 36 (42)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Confidence 3566677666 3455555555555555
No 194
>PRK08382 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=22.86 E-value=2.4e+02 Score=25.78 Aligned_cols=56 Identities=11% Similarity=0.116 Sum_probs=36.0
Q ss_pred hhhHHHhhcCCCCcccccccccccceechh---HHHHHHHhhHHHHHhcCCh--hHHHHHHHHHHH
Q 023714 177 EVKEIVETFTLPTEDVKEFSTLRDFYLGIP---YGLLLTLGGFISFMVTGSI--PAIRFGVILGGT 237 (278)
Q Consensus 177 ~vK~i~et~~~~~e~~~~~skmHDFclgip---YG~Lva~GGiiGY~kaGS~--~SL~aGl~~G~l 237 (278)
.++++++.. +++..-+++..|-.-+ |-.+..+-.++..+.+|+. ..++.|+++|.+
T Consensus 7 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~llLf~~WllLsg~~s~~~l~lG~i~~~~ 67 (201)
T PRK08382 7 YLRERLEEV-----KERVLYEIYEAQKLPPWERFVLTWLILLAFWVIISGDLSPRGLILGALTTLI 67 (201)
T ss_pred HHHHHHhhc-----ccccceeecccccCCcchHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH
Confidence 566666654 3455566666555444 5555566678888889976 556777777765
No 195
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.80 E-value=90 Score=28.97 Aligned_cols=24 Identities=42% Similarity=0.555 Sum_probs=19.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 023714 108 AFREQAIKMQSVSQEAYEIYSKRATAI 134 (278)
Q Consensus 108 ~fkeqa~kmq~~s~eaY~vys~ka~~v 134 (278)
.+.|||.||- -|-||.|+.||+-.
T Consensus 127 ALNEeAGkmL---LEnYdeYa~rARl~ 150 (223)
T KOG0423|consen 127 ALNEEAGKML---LENYDEYARRARLY 150 (223)
T ss_pred HHhHHHHHHH---HHhHHHHHHHHHHH
Confidence 4668999985 68999999998753
No 196
>PRK09713 focB putative formate transporter; Provisional
Probab=22.68 E-value=81 Score=29.91 Aligned_cols=53 Identities=13% Similarity=0.234 Sum_probs=37.0
Q ss_pred ccccccccccceechhHHHHHHHhhHHHHHhcCC------hhHHHHHHHHHHHHHHHHH
Q 023714 191 DVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGS------IPAIRFGVILGGTLLALSI 243 (278)
Q Consensus 191 ~~~~~skmHDFclgipYG~Lva~GGiiGY~kaGS------~~SL~aGl~~G~lLL~aGy 243 (278)
+-.+.+...-|+.++.=|+++++|+++-...... ...+++|++|+..|+..-+
T Consensus 25 ~k~~~~~~~~~~~~i~AG~~I~~g~~~~~~v~~~~~~~~g~~~ll~g~~F~vGLilIv~ 83 (282)
T PRK09713 25 HKIARSKVSVFLMAMSAGVFMAIGFTFYLSVIADAPSSQALTHLVGGLCFTLGFILLAV 83 (282)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHHHH
Confidence 3444566678888988888888888766554422 3678888888877665544
No 197
>PF01277 Oleosin: Oleosin; InterPro: IPR000136 Oleosins [] are the proteinaceous components of plants' lipid storage bodies called oil bodies. Oil bodies are small droplets (0.2 to 1.5 mu-m in diameter) containing mostly triacylglycerol that are surrounded by a phospholipid/ oleosin annulus. Oleosins may have a structural role in stabilising the lipid body during dessication of the seed, by preventing coalescence of the oil. They may also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. Oleosins are found in the monolayer lipid/ water interface of oil bodies and probably interact with both the lipid and phospholipid moieties. Oleosins are proteins of 16 Kd to 24 Kd and are composed of three domains: an N-terminal hydrophilic region of variable length (from 30 to 60 residues); a central hydrophobic domain of about 70 residues and a C-terminal amphipathic region of variable length (from 60 to 100 residues). The central hydrophobic domain is proposed to be made up of beta-strand structure and to interact with the lipids []. It is the only domain whose sequence is conserved.; GO: 0012511 monolayer-surrounded lipid storage body, 0016021 integral to membrane
Probab=22.62 E-value=80 Score=26.96 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=20.1
Q ss_pred HHHHHHhhHHHHHHHHhhhhhhhhH
Q 023714 144 IEAEKARKDLTVVAKELSEDGKKYL 168 (278)
Q Consensus 144 iqa~ka~~~L~~~ake~~e~gkeyl 168 (278)
.|.|-||..+...|..++++.|||=
T Consensus 91 ~q~d~Ak~ri~d~a~~v~~kake~g 115 (118)
T PF01277_consen 91 DQLDYAKRRIADTASYVGQKAKEVG 115 (118)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4668888888888888888888873
No 198
>PRK00567 mscL large-conductance mechanosensitive channel; Reviewed
Probab=22.57 E-value=1.2e+02 Score=26.13 Aligned_cols=25 Identities=28% Similarity=0.643 Sum_probs=20.7
Q ss_pred hhHHHHHhcCChhHHHHHHHHHHHH
Q 023714 214 GGFISFMVTGSIPAIRFGVILGGTL 238 (278)
Q Consensus 214 GGiiGY~kaGS~~SL~aGl~~G~lL 238 (278)
-|+--|+.+|++.-|..|++.|++.
T Consensus 3 ~~FK~Fi~rGNVidLAVaVIIG~AF 27 (134)
T PRK00567 3 KEFKEFAMRGNVVDLAVGVIIGAAF 27 (134)
T ss_pred HHHHHHHHccchHHHHHHHHHHHHH
Confidence 3667788999999999999998874
No 199
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=22.57 E-value=3e+02 Score=21.36 Aligned_cols=68 Identities=16% Similarity=0.010 Sum_probs=34.6
Q ss_pred ccceechhHHHHHHHhhHHHHHhc-CChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHHHHH
Q 023714 199 RDFYLGIPYGLLLTLGGFISFMVT-GSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRV 267 (278)
Q Consensus 199 HDFclgipYG~Lva~GGiiGY~ka-GS~~SL~aGl~~G~lLL~aGygSLk~~k~gk~s~l~L~~SavLAa 267 (278)
|++...+..|.+....+...|+.+ .-.++ ..-++.+..-+....++...+|..-+...++..-.++++
T Consensus 32 ~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~G 100 (113)
T PF13536_consen 32 KPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIG 100 (113)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 444444455555554555555554 22223 333666666666666777777765444444443333333
No 200
>PF14256 YwiC: YwiC-like protein
Probab=22.54 E-value=4.4e+02 Score=22.15 Aligned_cols=61 Identities=8% Similarity=0.158 Sum_probs=37.4
Q ss_pred chhHHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHHHHHHH
Q 023714 204 GIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVY 269 (278)
Q Consensus 204 gipYG~Lva~GGiiGY~kaGS~~SL~aGl~~G~lLL~aGygSLk~~k~gk~s~l~L~~SavLAavm 269 (278)
.+.||++.++.|+.-.+..=.. +..++++.-+ .++-.+-++++...+.+.=+...+..++|
T Consensus 62 ~~~Yg~~a~~~~l~~l~~~p~l--l~~~~~~~pl---~~v~~~~~~~~~eRsLlndl~~i~a~~l~ 122 (129)
T PF14256_consen 62 ALIYGAIALVFGLPALLYAPRL--LWWALLFLPL---FAVNLYFAKRKRERSLLNDLAAIAAFSLM 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHH---HHHHHHHHHhcCchhHHHhHHHHHHHHHH
Confidence 7899999999999888755433 3555555555 44444456777666654444444433333
No 201
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=22.48 E-value=2.8e+02 Score=27.63 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHH
Q 023714 97 ESEEAWKQTLAAFREQA 113 (278)
Q Consensus 97 es~E~Wkq~L~~fkeqa 113 (278)
.+.+....+|+++.+.+
T Consensus 95 ~~~~~~~~~l~~~~~~~ 111 (525)
T TIGR02231 95 DALKALAKFLEDIREGL 111 (525)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 46667777777776544
No 202
>PF05513 TraA: TraA; InterPro: IPR008873 Conjugative transfer of a bacteriocin plasmid, pPD1, of Enterococcus faecalis is induced in response to a peptide sex pheromone, cPD1, secreted from plasmid-free recipient cells. cPD1 is taken up by a pPD1 donor cell and binds to an intracellular receptor, TraA. Once a recipient cell acquires pPD1, it starts to produce an inhibitor of cPD1, termed iPD1, which functions as a TraA antagonist and blocks self-induction in donor cells. TraA transduces the signal of cPD1 to the mating response [].; GO: 0000746 conjugation, 0005576 extracellular region
Probab=22.46 E-value=1.1e+02 Score=26.17 Aligned_cols=31 Identities=10% Similarity=0.097 Sum_probs=21.8
Q ss_pred HHhhHHHHHhcCChhHHHHHHHHHHHHHHHHH
Q 023714 212 TLGGFISFMVTGSIPAIRFGVILGGTLLALSI 243 (278)
Q Consensus 212 a~GGiiGY~kaGS~~SL~aGl~~G~lLL~aGy 243 (278)
+++|++.|+++.|.. .+.|+..+.+..-.|+
T Consensus 85 vi~~~v~y~~TkN~~-~~~Gf~i~iIft~Vg~ 115 (119)
T PF05513_consen 85 VIVGVVMYFKTKNPM-VFGGFAIVIIFTNVGF 115 (119)
T ss_pred HHHHHHHHHhccChH-HhhhhHHhHhHHHhhh
Confidence 367788899999965 5677777776554443
No 203
>PLN02601 beta-carotene hydroxylase
Probab=22.39 E-value=1.4e+02 Score=29.33 Aligned_cols=46 Identities=20% Similarity=0.254 Sum_probs=37.1
Q ss_pred ccceechhHHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHh
Q 023714 199 RDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIA 244 (278)
Q Consensus 199 HDFclgipYG~Lva~GGiiGY~kaGS~~SL~aGl~~G~lLL~aGyg 244 (278)
..|.+.+.||+.-.+-=.+|+...|=.+.+.+|+++|.++..+.|.
T Consensus 180 ~NDlFaVifAvpAIaL~~~G~~~~g~~p~~~fgiGlGITlYGiaYf 225 (303)
T PLN02601 180 LNDVFAIVNAVPAIGLLYYGFFNKGLVPGLCFGAGLGITVFGMAYM 225 (303)
T ss_pred cccchhhhhHHHHHHHHHHhhccccccHHHHHHHHHhHHHHHHHHH
Confidence 4567888899888877788887778787788889999998877775
No 204
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.22 E-value=82 Score=31.94 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHH
Q 023714 97 ESEEAWKQTLAAFREQAIKMQSVSQE 122 (278)
Q Consensus 97 es~E~Wkq~L~~fkeqa~kmq~~s~e 122 (278)
+-.+.|++.+...-+--.+-..+|++
T Consensus 33 ~ld~~~r~~~~~~e~l~~~rn~~sk~ 58 (429)
T COG0172 33 ELDEERRKLLRELEELQAERNELSKE 58 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666555444333333344444
No 205
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=22.16 E-value=1.6e+02 Score=20.87 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=17.0
Q ss_pred HHHHHHHHHHH---HHHHHHhhhhhhcCCCC
Q 023714 227 AIRFGVILGGT---LLALSIASLRSHKKGKT 254 (278)
Q Consensus 227 SL~aGl~~G~l---LL~aGygSLk~~k~gk~ 254 (278)
.|.+|+++|.+ +..+.+.||.-+++|+.
T Consensus 4 plL~GiVlGli~vtl~Glfv~Ay~QY~Rg~q 34 (37)
T PF02529_consen 4 PLLSGIVLGLIPVTLAGLFVAAYLQYRRGNQ 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCS--T
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHhcccc
Confidence 35667777754 33455678888888864
No 206
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=22.13 E-value=6e+02 Score=27.39 Aligned_cols=60 Identities=15% Similarity=0.220 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhh
Q 023714 103 KQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSE 162 (278)
Q Consensus 103 kq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e 162 (278)
++-++..++++.+.+.-=.+.++...++-..++.++.++.+...++|+++...+-+++-+
T Consensus 531 ~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 531 NEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555555555555566666666667777777777777777777666666666654
No 207
>PRK13955 mscL large-conductance mechanosensitive channel; Provisional
Probab=22.10 E-value=1.3e+02 Score=26.08 Aligned_cols=25 Identities=24% Similarity=0.623 Sum_probs=20.7
Q ss_pred hhHHHHHhcCChhHHHHHHHHHHHH
Q 023714 214 GGFISFMVTGSIPAIRFGVILGGTL 238 (278)
Q Consensus 214 GGiiGY~kaGS~~SL~aGl~~G~lL 238 (278)
-|+--|+.+|++.-|..|++.|++.
T Consensus 3 ~eFK~Fi~rGNVidLAVgVVIG~AF 27 (130)
T PRK13955 3 NEFKKFAFKGNVIDLAVGVVIGAAF 27 (130)
T ss_pred HHHHHHHHccchHHHHHHHHHHHHH
Confidence 4677788999999999999988873
No 208
>PF07051 OCIA: Ovarian carcinoma immunoreactive antigen (OCIA); InterPro: IPR009764 This family consists of several ovarian carcinoma immunoreactive antigen (OCIA) and related eukaryotic sequences. The function of this family is unknown [,].
Probab=21.95 E-value=1.2e+02 Score=25.73 Aligned_cols=41 Identities=24% Similarity=0.437 Sum_probs=26.9
Q ss_pred echhHHHHHH--HhhHH--HHHhc----CChhHHHHHHHHHHHHHHHHHhhh
Q 023714 203 LGIPYGLLLT--LGGFI--SFMVT----GSIPAIRFGVILGGTLLALSIASL 246 (278)
Q Consensus 203 lgipYG~Lva--~GGii--GY~ka----GS~~SL~aGl~~G~lLL~aGygSL 246 (278)
-++|+++... ..+++ ||+++ |+.+-+++++++|-+ +|-.||
T Consensus 45 RslPls~~s~~~t~~lv~~G~l~~~~rfG~~PKv~~ag~~Gy~---~GK~SY 93 (111)
T PF07051_consen 45 RSLPLSAGSMLVTQGLVKKGYLKSSPRFGSLPKVAFAGILGYF---VGKISY 93 (111)
T ss_pred ccCcHHHHHHHHHHHHHHcCcccCCCccccccHHHHHHHHHHh---hhHHHH
Confidence 4677776532 33332 55544 778889999999988 555555
No 209
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=21.93 E-value=1.8e+02 Score=21.00 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=20.1
Q ss_pred echhHHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHh
Q 023714 203 LGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIA 244 (278)
Q Consensus 203 lgipYG~Lva~GGiiGY~kaGS~~SL~aGl~~G~lLL~aGyg 244 (278)
+=+.-|+++.+.|+.++.... +.+. .+.|+.+++.|+.
T Consensus 12 ~R~~~G~~l~~~~~~~~~~~~---~~~~-~~~g~~ll~~g~~ 49 (66)
T PF11127_consen 12 VRIIIGIVLLALGLLGLFGSW---GWLL-GFVGAMLLVTGIT 49 (66)
T ss_pred HHHHHHHHHHHHHHHhcccch---HHHH-HHHHHHHHHHHHH
Confidence 345567777777777664444 2222 3344445555544
No 210
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=21.60 E-value=4.8e+02 Score=24.18 Aligned_cols=64 Identities=19% Similarity=0.239 Sum_probs=44.0
Q ss_pred hhhhhhcChhhHHHHHHHHHHHHHHH-HHHhhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023714 87 ESSEIKASAKESEEAWKQTLAAFREQ-AIKMQSVSQ--EAYEIYSKRATAILKETAEQLKIEAEKAR 150 (278)
Q Consensus 87 e~~~~~~~~ees~E~Wkq~L~~fkeq-a~kmq~~s~--eaY~vys~ka~~vL~etse~L~iqa~ka~ 150 (278)
|-++-+.+=|++.|.|-.-+-.|.+. +.-++.+.. +|--.|-++|.++|.+...+|+.+.+.+.
T Consensus 166 E~e~ae~k~e~~~e~~~~~M~~~l~~E~e~~~~l~~lv~aQl~YH~~a~e~L~~l~~~l~~~~~~~~ 232 (244)
T cd07595 166 EYEEAELKLEQCRDALATDMYEFLAKEAEIASYLIDLIEAQREYHRTALSVLEAVLPELQEQIEQSP 232 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444455556777776666666655 444444443 68888999999999999888887776654
No 211
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=21.47 E-value=6.5e+02 Score=24.44 Aligned_cols=41 Identities=27% Similarity=0.395 Sum_probs=32.0
Q ss_pred hhhcChhhHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHH
Q 023714 90 EIKASAKESEEAWKQTLAAFREQAIKMQSV--SQEAYEIYSKR 130 (278)
Q Consensus 90 ~~~~~~ees~E~Wkq~L~~fkeqa~kmq~~--s~eaY~vys~k 130 (278)
-++++-|..---|+.|=..++.++-||-=. =.--|+||-+|
T Consensus 77 g~Kigled~~t~~r~~eakvraei~~mkVt~kvn~h~kI~g~r 119 (265)
T PF06409_consen 77 GIKIGLEDLFTLWRHMEAKVRAEIRKMKVTTKVNSHYKINGKR 119 (265)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHH
Confidence 466777788889999999999999877543 23468999865
No 212
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=21.43 E-value=5.2e+02 Score=26.90 Aligned_cols=89 Identities=15% Similarity=0.123 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHH---------------HHHHHHHHHHHHHHHHH----HHHHhhHHHHHHHH
Q 023714 99 EEAWKQTLAAFREQAIKMQSVSQEAYEIYS---------------KRATAILKETAEQLKIE----AEKARKDLTVVAKE 159 (278)
Q Consensus 99 ~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys---------------~ka~~vL~etse~L~iq----a~ka~~~L~~~ake 159 (278)
++-.++++..+|+.+..+.++...+.-.|. +.+..+|.+..++|... .|..+.-+..++++
T Consensus 390 ~~~l~~~~~l~~~r~~~l~d~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~e~~~~~~~~~~~~ 469 (513)
T PRK14895 390 IGYIKQAMPSLLVRSETLLELTRLAQIYLVDSPIIYSQDSKEIIENCDKNLIKQIIENLSELEQFDKESVQNKFKEIAAA 469 (513)
T ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHHhCCCCccchHHHHHhhhhhHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 345588888999888888877777643331 22345667766667552 45566677888888
Q ss_pred hhhhhhhhHhH---H---hhcCchhhHHHhhcCC
Q 023714 160 LSEDGKKYLTE---A---TENNPEVKEIVETFTL 187 (278)
Q Consensus 160 ~~e~gkeyl~~---a---aensp~vK~i~et~~~ 187 (278)
.|-++++...- | ...+|++-|+.+-++-
T Consensus 470 ~g~k~~~l~~plR~AltG~~~gP~l~~~~~lLGk 503 (513)
T PRK14895 470 NDLKLNDIMKPVRALITGMTASPSVFEIAEILGK 503 (513)
T ss_pred hCCCHHHhHHHHHHHHcCCCCCCCHHHHHHHhCH
Confidence 88888875432 2 3677888888887764
No 213
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=21.41 E-value=1.8e+02 Score=27.68 Aligned_cols=44 Identities=34% Similarity=0.473 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHhhhhhhh
Q 023714 123 AYEIYSKRATAILKETAEQL----KIEAEKARKDLTVVAKELSEDGKK 166 (278)
Q Consensus 123 aY~vys~ka~~vL~etse~L----~iqa~ka~~~L~~~ake~~e~gke 166 (278)
-|.--|+|+...|+|--+.+ ..+.|+||+.+-.+++++.++|+=
T Consensus 282 il~nmS~R~a~~l~eel~~~g~v~~~dve~Aq~~I~~~~r~l~~~G~I 329 (339)
T PRK05686 282 FLSNMSKRAAEMLREDLEALGPVRLSDVEEAQKKIVQIARRLAEAGEI 329 (339)
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 45667999999999987765 568999999999999999999973
No 214
>PF03739 YjgP_YjgQ: Predicted permease YjgP/YjgQ family; InterPro: IPR005495 Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long, contain about 6 transmembrane regions and may be permeases, although there is no verification of this.; GO: 0016021 integral to membrane
Probab=21.34 E-value=6e+02 Score=23.11 Aligned_cols=41 Identities=15% Similarity=0.115 Sum_probs=22.1
Q ss_pred hhHHHHHh--cCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q 023714 214 GGFISFMV--TGSIPAIRFGVILGGTLLALSIASLRSHKKGKT 254 (278)
Q Consensus 214 GGiiGY~k--aGS~~SL~aGl~~G~lLL~aGygSLk~~k~gk~ 254 (278)
|-.+|+.. .|...++..|++++.+...+...+-..-++|.-
T Consensus 289 a~~l~~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~l 331 (354)
T PF03739_consen 289 ALPLGIRFPRSGRISSLFIALLLGFLYYILFSFFSSLGENGNL 331 (354)
T ss_pred HHHHhhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 33344443 356666777777777644444444444455443
No 215
>PRK13952 mscL large-conductance mechanosensitive channel; Provisional
Probab=21.18 E-value=1.4e+02 Score=26.14 Aligned_cols=26 Identities=35% Similarity=0.746 Sum_probs=20.9
Q ss_pred HhhHHHHHhcCChhHHHHHHHHHHHH
Q 023714 213 LGGFISFMVTGSIPAIRFGVILGGTL 238 (278)
Q Consensus 213 ~GGiiGY~kaGS~~SL~aGl~~G~lL 238 (278)
+=|+=.|+.+|++.-|..|++.|++.
T Consensus 4 lkeFK~Fi~rGNViDLAVgVIIG~AF 29 (142)
T PRK13952 4 LKEFKEFALKGNVMDLAVGVIIGGAF 29 (142)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34677888889999988888888873
No 216
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=20.98 E-value=4.1e+02 Score=20.79 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 023714 98 SEEAWKQTLAAFREQAIKM 116 (278)
Q Consensus 98 s~E~Wkq~L~~fkeqa~km 116 (278)
-.+.-...|+.-+.++.+|
T Consensus 52 ~~~e~~~~l~~a~~ea~~i 70 (132)
T PF00430_consen 52 LLAEYEEKLAEAREEAQEI 70 (132)
T ss_dssp HHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 217
>PHA02047 phage lambda Rz1-like protein
Probab=20.86 E-value=4.1e+02 Score=22.48 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhhcCc-hhhHHHhh
Q 023714 128 SKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNP-EVKEIVET 184 (278)
Q Consensus 128 s~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e~gkeyl~~aaensp-~vK~i~et 184 (278)
|-|+..+-.++.|+|..|.|.++..+..+=+.|-. |..-+|-.- +||...|.
T Consensus 25 ~~r~~g~~h~~a~~la~qLE~a~~r~~~~Q~~V~~-----l~~kae~~t~Ei~~aL~~ 77 (101)
T PHA02047 25 SYRALGIAHEEAKRQTARLEALEVRYATLQRHVQA-----VEARTNTQRQEVDRALDQ 77 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHh
Confidence 34677777889999999999999988887666543 222244444 66666664
No 218
>TIGR03766 conserved hypothetical integral membrane protein. Models TIGR03110, TIGR03111, and TIGR03112 describe a three-gene system found in several Gram-positive bacteria, where TIGR03110 is distantly related to a putative transpeptidase, exosortase (TIGR02602). This model describes a small clade that correlates by both gene clustering and phyletic pattern, although imperfectly, to the three gene system. Both this narrow clade, and the larger set of full-length homologous integral membrane proteins, have an especially well-conserved region near the C-terminus with an invariant tyrosine. The function is unknown.
Probab=20.84 E-value=7.4e+02 Score=24.73 Aligned_cols=59 Identities=14% Similarity=-0.010 Sum_probs=34.8
Q ss_pred HHhhHHHHH-hcCChhHH-HHHHHHHHHHHHHHHhhhhhhcCCCCchhHHH-HHHHHHHHHHHHHhhh
Q 023714 212 TLGGFISFM-VTGSIPAI-RFGVILGGTLLALSIASLRSHKKGKTSPVALK-GQAGQRVVYFTIEITK 276 (278)
Q Consensus 212 a~GGiiGY~-kaGS~~SL-~aGl~~G~lLL~aGygSLk~~k~gk~s~l~L~-~SavLAavm~~R~~~~ 276 (278)
++++++.-+ ++.+..++ +.=.++|+ +.-+-.|.-|++.+.... -...+.++.|+..+..
T Consensus 420 ~l~~~~~~~~k~~~~~~~~l~l~liGg------flf~ll~E~g~sRY~~~~lp~li~laa~G~~~~~~ 481 (483)
T TIGR03766 420 SLGIIIFAWFRNKDDKSLVLRLAIFGG------FLFLLIFEGGRSRYLIQFLPFILLLSALGISQLRE 481 (483)
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHH------HHHHHHHcCCCceeeHHHHHHHHHHHHHHHHHHHh
Confidence 677777776 66665544 33333333 444457888887764443 4455666778776654
No 219
>CHL00015 ndhE NADH dehydrogenase subunit 4L
Probab=20.78 E-value=4.1e+02 Score=21.12 Aligned_cols=37 Identities=5% Similarity=0.011 Sum_probs=25.1
Q ss_pred HHHHHHhhHHHHHhcCChhHHHHHHH---HHHHHHHHHHh
Q 023714 208 GLLLTLGGFISFMVTGSIPAIRFGVI---LGGTLLALSIA 244 (278)
Q Consensus 208 G~Lva~GGiiGY~kaGS~~SL~aGl~---~G~lLL~aGyg 244 (278)
++++..-|+.|++.+++......|+= .|..++....+
T Consensus 10 ~~~lf~iGl~g~l~~rnll~~LlslE~m~~~v~l~~~~~~ 49 (101)
T CHL00015 10 SAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFS 49 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777789999999888887776653 34444444444
No 220
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=20.75 E-value=4.2e+02 Score=24.40 Aligned_cols=51 Identities=16% Similarity=0.057 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023714 97 ESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAE 147 (278)
Q Consensus 97 es~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ 147 (278)
-+-..|+++.+.+++.-.++.--..+.|+-+.++-..-|++...+++.+..
T Consensus 121 ldp~~~~~~a~~Ia~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~l~ 171 (287)
T cd01137 121 MSPKNAIIYVKNIAKALSEADPANAETYQKNAAAYKAKLKALDEWAKAKFA 171 (287)
T ss_pred cCHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345678999999998888888888888888887766666666665555544
No 221
>PF15556 Zwint: ZW10 interactor
Probab=20.73 E-value=5.2e+02 Score=24.73 Aligned_cols=42 Identities=14% Similarity=0.305 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhh
Q 023714 121 QEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSE 162 (278)
Q Consensus 121 ~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e 162 (278)
+.-|-.--+|-..-|-+.|-.+|..--.++.+|..+-.|++.
T Consensus 125 QkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~ 166 (252)
T PF15556_consen 125 QKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGT 166 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455655667777777877777888888877777764
No 222
>COG3671 Predicted membrane protein [Function unknown]
Probab=20.72 E-value=1.7e+02 Score=25.53 Aligned_cols=71 Identities=17% Similarity=0.171 Sum_probs=43.8
Q ss_pred hhcCc-hhhHHHhhcCCCCcccccccccccceechhHHHHHHHhhHHHHHhcCChhHH---------------HHHHHHH
Q 023714 172 TENNP-EVKEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAI---------------RFGVILG 235 (278)
Q Consensus 172 aensp-~vK~i~et~~~~~e~~~~~skmHDFclgipYG~Lva~GGiiGY~kaGS~~SL---------------~aGl~~G 235 (278)
.|.+| .-++..|+..+ ++-.-++.+-=|-+|+.=|.+-.+|-|++|+..-+-.|+ +.+-+.|
T Consensus 3 ~~~~a~~dt~~~e~~~~--~k~l~~vvY~Ly~~G~v~git~lvgvi~AYv~rd~~~~~~~SHy~f~iRTFw~~vl~~iIg 80 (125)
T COG3671 3 FERQAMMDTHVAERLES--GKKLPIVVYILYLLGAVTGITPLVGVIFAYVNRDKADSIAASHYEFLIRTFWLAVLWWIIG 80 (125)
T ss_pred ccccccccccccccccc--cccchHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555 55666666654 233334444445566666777788889999987554443 3456667
Q ss_pred HHHHHHHHh
Q 023714 236 GTLLALSIA 244 (278)
Q Consensus 236 ~lLL~aGyg 244 (278)
.+|..+|+|
T Consensus 81 ~Llt~lgiG 89 (125)
T COG3671 81 LLLTFLGIG 89 (125)
T ss_pred HHHHHHHHH
Confidence 777766663
No 223
>TIGR00704 NaPi_cotrn_rel Na/Pi-cotransporter. This model describes essentially the full length of an uncharacterized protein from Bacillus subtilis and correponding lengths of longer proteins from E. coli and Treponema pallidum. PSI-BLAST analysis converges to demonstrate homology to one other group of proteins, type II sodium/phosphate (Na/Pi) cotransporters. A well-conserved repeated domain in this family, approximately 60 residues in length, is also repeated in the Na/Pi cotransporters, although with greater spacing between the repeats. The two families share additional homology in the region after the first repeat, share the properly of having extensive hydrophobic regions, and may be similar in function.
Probab=20.60 E-value=5.2e+02 Score=24.85 Aligned_cols=40 Identities=23% Similarity=0.241 Sum_probs=23.1
Q ss_pred HHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHhhh
Q 023714 207 YGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASL 246 (278)
Q Consensus 207 YG~Lva~GGiiGY~kaGS~~SL~aGl~~G~lLL~aGygSL 246 (278)
|.-++.+||++-|+.+++...-+.-+++|..|++.|..-.
T Consensus 107 ~~p~~~~~g~~~~~~~~~~~~~~G~~l~G~gllf~gl~~m 146 (307)
T TIGR00704 107 LSPLLIIGGVLFFLGRQSRAGQLGRSGIGLGLIFLALELI 146 (307)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566777766654544444455666666666665443
No 224
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=20.52 E-value=4.9e+02 Score=21.40 Aligned_cols=67 Identities=18% Similarity=0.281 Sum_probs=33.1
Q ss_pred cChhhHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 023714 93 ASAKESEEAWKQTLAAFREQAIKMQSVS-QEAYEIY-------SKRATAILKETAEQLKIEAEKARKDLTVVAKE 159 (278)
Q Consensus 93 ~~~ees~E~Wkq~L~~fkeqa~kmq~~s-~eaY~vy-------s~ka~~vL~etse~L~iqa~ka~~~L~~~ake 159 (278)
.+.++..+.-++-|...+.++..+-.-. .+|-.++ .+.+..+..++-+++..+.++++.+|..-+-.
T Consensus 52 ~~a~~~~~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~l~~~~~~ 126 (156)
T PRK05759 52 KELELAQAKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQERKRAREELRKQVAD 126 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555666665555543322 2222222 23344555556666666666666655543333
No 225
>PRK10209 acid-resistance membrane protein; Provisional
Probab=20.49 E-value=3.9e+02 Score=23.40 Aligned_cols=45 Identities=24% Similarity=0.349 Sum_probs=29.6
Q ss_pred chhHHHHHHHhhHHHHH---hcCC--hhHHHHHHHHHHHHHHHHHhhhhh
Q 023714 204 GIPYGLLLTLGGFISFM---VTGS--IPAIRFGVILGGTLLALSIASLRS 248 (278)
Q Consensus 204 gipYG~Lva~GGiiGY~---kaGS--~~SL~aGl~~G~lLL~aGygSLk~ 248 (278)
++..|.++.+.|++.-+ ..+. ......+++.|.+.+.+|+..+..
T Consensus 50 ~~~~g~~ll~~Gi~~l~~~~~~~~~~~~~~~~~ll~Gil~ii~Gil~l~~ 99 (190)
T PRK10209 50 STVVGILLICSGIALIVGLFANRSHNFWPMLSGILLGVAYLVLGYFFIRN 99 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45577778888886433 2222 344556788888888888886643
No 226
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=20.43 E-value=1.1e+02 Score=24.68 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHhhHHHH
Q 023714 136 KETAEQLKIEAEKARKDLTV 155 (278)
Q Consensus 136 ~etse~L~iqa~ka~~~L~~ 155 (278)
.|+.+.|+.|.+.||+||..
T Consensus 67 peA~~eL~~eI~eAK~dLr~ 86 (91)
T PF08285_consen 67 PEAAKELQKEIKEAKADLRK 86 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999964
No 227
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=20.20 E-value=1.5e+02 Score=25.71 Aligned_cols=7 Identities=14% Similarity=0.710 Sum_probs=3.6
Q ss_pred HHHHHHH
Q 023714 231 GVILGGT 237 (278)
Q Consensus 231 Gl~~G~l 237 (278)
++++|++
T Consensus 36 ~~l~~~~ 42 (199)
T PF10112_consen 36 SLLIGAV 42 (199)
T ss_pred HHHHHHH
Confidence 5555554
No 228
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=20.13 E-value=4.3e+02 Score=31.17 Aligned_cols=41 Identities=20% Similarity=0.514 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhhcCc-hhhHHHhh
Q 023714 139 AEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNP-EVKEIVET 184 (278)
Q Consensus 139 se~L~iqa~ka~~~L~~~ake~~e~gkeyl~~aaensp-~vK~i~et 184 (278)
++--+.|.++..++|..++++|.+ +|+ .-..+| +|+++.|.
T Consensus 1459 a~as~~q~~~s~~el~~Li~~v~~----Flt-~~~adp~si~~vA~~ 1500 (1758)
T KOG0994|consen 1459 ANASRSQMEESNRELRNLIQQVRD----FLT-QPDADPDSIEEVAEE 1500 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----Hhc-CCCCCHHHHHHHHHH
Confidence 344577888888888888888864 443 334455 77777665
Done!