Query 023714
Match_columns 278
No_of_seqs 108 out of 154
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 11:32:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023714.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023714hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2loo_A Transmembrane protein 1 99.4 4.7E-17 1.6E-21 131.3 0.0 76 197-275 7-82 (108)
2 2los_A Transmembrane protein 1 99.4 6.7E-17 2.3E-21 132.9 0.0 77 196-275 15-91 (121)
3 3p5n_A RIBU, riboflavin uptake 54.0 68 0.0023 26.6 8.6 55 199-256 54-110 (189)
4 3fym_A Putative uncharacterize 47.9 9.7 0.00033 29.7 2.3 67 152-219 53-124 (130)
5 3mxz_A Tubulin-specific chaper 46.0 90 0.0031 25.1 7.8 58 103-162 28-88 (116)
6 1nhl_A Synaptosomal-associated 41.9 80 0.0027 21.8 6.1 34 95-128 9-42 (54)
7 3sja_C Golgi to ER traffic pro 39.2 52 0.0018 24.5 5.0 48 105-163 11-58 (65)
8 1j1j_A Translin; testis/brain 38.0 1.2E+02 0.0041 26.6 8.0 16 146-161 77-92 (240)
9 3axj_A GM27569P, translin; tra 37.8 1.4E+02 0.0048 26.3 8.5 37 125-161 49-95 (249)
10 3ghg_A Fibrinogen alpha chain; 31.1 95 0.0033 31.3 6.8 70 97-175 57-129 (562)
11 3rko_K NADH-quinone oxidoreduc 31.1 1.7E+02 0.0058 22.0 7.3 29 205-233 8-36 (100)
12 4dah_A Sporulation kinase D; a 30.2 1.3E+02 0.0044 23.6 6.3 58 121-178 8-70 (217)
13 2l2t_A Receptor tyrosine-prote 29.2 54 0.0019 22.6 3.4 17 224-240 8-24 (44)
14 4i0x_B ESAT-6-like protein MAB 29.1 1.7E+02 0.0059 21.5 7.7 61 100-168 28-91 (103)
15 3kcu_A Probable formate transp 28.3 44 0.0015 30.2 3.6 65 179-243 13-84 (285)
16 1a87_A Colicin N; bacteriocin, 28.1 3.9E+02 0.013 25.3 10.8 85 103-188 124-219 (321)
17 2k9y_A Ephrin type-A receptor 28.0 65 0.0022 20.6 3.5 19 222-240 9-27 (41)
18 3j1z_P YIIP, cation efflux fam 27.7 76 0.0026 28.0 5.0 52 203-254 17-70 (306)
19 3pkr_A FLIG, flagellar motor s 27.1 63 0.0022 29.3 4.5 53 115-167 210-270 (279)
20 2ks1_B Epidermal growth factor 26.7 26 0.00088 24.1 1.4 23 223-245 8-30 (44)
21 2j69_A Bacterial dynamin-like 25.2 4.1E+02 0.014 26.2 10.2 15 231-245 569-583 (695)
22 3fse_A Two-domain protein cont 25.1 1.8E+02 0.0063 26.9 7.3 27 104-131 210-236 (365)
23 1n7s_C SNAP-25A; neuronal snar 24.2 2.2E+02 0.0075 21.1 6.5 22 97-118 34-55 (79)
24 2zxe_G FXYD10, phospholemman-l 23.2 53 0.0018 25.2 2.7 18 229-246 21-38 (74)
25 2jp3_A FXYD domain-containing 23.2 59 0.002 24.5 2.9 17 229-245 19-35 (67)
26 2e0g_A Chromosomal replication 23.0 16 0.00054 27.5 -0.3 26 99-130 2-27 (107)
27 3kly_A Putative formate transp 22.9 49 0.0017 29.8 2.9 67 179-245 12-85 (280)
28 3sjb_C Golgi to ER traffic pro 22.6 1.2E+02 0.004 24.0 4.7 38 114-162 37-74 (93)
29 1got_G GT-gamma; complex (GTP- 22.4 59 0.002 24.3 2.8 41 134-178 21-61 (73)
30 2jo1_A Phospholemman; FXYD1, N 21.9 64 0.0022 24.6 2.9 16 229-244 18-33 (72)
31 3b0b_B CENP-S, centromere prot 21.3 2.9E+02 0.0099 21.9 6.8 57 126-185 39-97 (107)
32 1gl2_C VTI1B, vesicle transpor 21.2 2.3E+02 0.0077 20.1 6.4 34 95-128 18-51 (65)
33 2xwv_A Sialic acid-binding per 20.9 2E+02 0.007 25.0 6.4 30 147-176 277-306 (312)
34 4fhr_B Flagellar motor switch 20.2 1E+02 0.0034 26.7 4.2 42 124-165 166-211 (216)
35 3hjl_A Flagellar motor switch 20.2 94 0.0032 28.6 4.2 42 124-165 279-324 (329)
36 1qsd_A Protein (beta-tubulin b 20.1 3.2E+02 0.011 21.4 7.4 53 103-157 24-80 (106)
No 1
>2loo_A Transmembrane protein 14A; helical bundle; NMR {Homo sapiens} PDB: 2lop_A
Probab=99.40 E-value=4.7e-17 Score=131.30 Aligned_cols=76 Identities=16% Similarity=0.221 Sum_probs=70.0
Q ss_pred ccccceechhHHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHHHHHHHHHHHhh
Q 023714 197 TLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFTIEIT 275 (278)
Q Consensus 197 kmHDFclgipYG~Lva~GGiiGY~kaGS~~SL~aGl~~G~lLL~aGygSLk~~k~gk~s~l~L~~SavLAavm~~R~~~ 275 (278)
++-.+|++|+||+++++||++||+|+||++||++|+++|++ +++++|+.|++++...+.+..+++++.+|+.|.++
T Consensus 7 ~~~~~~~~~~yg~Ll~~GGi~GY~k~gS~~SL~aG~~~G~l---l~~~~~~~~~~~~~~~l~l~~S~~L~~~m~~R~~~ 82 (108)
T 2loo_A 7 KVGMDLIGFGYAALVTFGSIFGYKRRGGVPSLIAGLFVGCL---AGYGAYRVSNDKRDVKVSLFTAFFLATIMGVRFKR 82 (108)
Confidence 34568999999999999999999999999999999999998 58999999999988888899999999999999875
No 2
>2los_A Transmembrane protein 14C; paramagnetic relaxation enhancement, helic; NMR {Homo sapiens}
Probab=99.39 E-value=6.7e-17 Score=132.92 Aligned_cols=77 Identities=18% Similarity=0.322 Sum_probs=70.8
Q ss_pred cccccceechhHHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHHHHHHHHHHHhh
Q 023714 196 STLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFTIEIT 275 (278)
Q Consensus 196 skmHDFclgipYG~Lva~GGiiGY~kaGS~~SL~aGl~~G~lLL~aGygSLk~~k~gk~s~l~L~~SavLAavm~~R~~~ 275 (278)
..|-=+|++|+||+|+++||++||+|+||++||++|+++|++ +++++|+.|++++++++.+..+++++.+|+.|.++
T Consensus 15 ~~m~~~~~~~~yg~Ll~~GGiiGY~k~gS~~SLiaGl~~G~l---~~~~a~~~~~~~~~~~l~l~~S~~L~~~mg~R~~~ 91 (121)
T 2los_A 15 SVVPLHWFGFGYAALVASGGIIGYVKAGSVPSLAAGLLFGSL---AGLGAYQLSQDPRNVWVFLATSGTLAGIMGMRFYH 91 (121)
Confidence 345559999999999999999999999999999999999998 78999999999998889999999999999999874
No 3
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=54.04 E-value=68 Score=26.62 Aligned_cols=55 Identities=9% Similarity=0.249 Sum_probs=30.2
Q ss_pred ccceechhHHHHHH-HhhHHHHHhcCC-hhHHHHHHHHHHHHHHHHHhhhhhhcCCCCch
Q 023714 199 RDFYLGIPYGLLLT-LGGFISFMVTGS-IPAIRFGVILGGTLLALSIASLRSHKKGKTSP 256 (278)
Q Consensus 199 HDFclgipYG~Lva-~GGiiGY~kaGS-~~SL~aGl~~G~lLL~aGygSLk~~k~gk~s~ 256 (278)
=-+.+|..+|+++. ++++++++.+|. .....+.++.+++ .++.+.-.+|+.++.+
T Consensus 54 ~~~~~Gp~~g~~~~~l~~ll~~l~~g~~~~g~~~~~l~~~~---~g~~~~~~y~k~~~~~ 110 (189)
T 3p5n_A 54 ATFTFGPVAGIIVALVKNLLNYLFSMGDPVGPFANFLAGAS---FLLTAYAIYKNKRSTK 110 (189)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHH---HHHHHHHHHSSSCSHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHH---HHHHHHHHHHhcccHH
Confidence 34677888887764 577888888664 2333333333333 2222333466665543
No 4
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=47.93 E-value=9.7 Score=29.69 Aligned_cols=67 Identities=13% Similarity=0.171 Sum_probs=18.0
Q ss_pred HHHHHHHHhhhhhhhhHhHHhhcCc----hhhHHHhhcCCCCcccccccccccc-eechhHHHHHHHhhHHHH
Q 023714 152 DLTVVAKELSEDGKKYLTEATENNP----EVKEIVETFTLPTEDVKEFSTLRDF-YLGIPYGLLLTLGGFISF 219 (278)
Q Consensus 152 ~L~~~ake~~e~gkeyl~~aaensp----~vK~i~et~~~~~e~~~~~skmHDF-clgipYG~Lva~GGiiGY 219 (278)
-|..+|+.++-+..+.+....+..| ...+.++.|.... .+.+..+..+. |..+..+++++++.++.+
T Consensus 53 ~l~~ia~~L~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~i~i~~~~~~ 124 (130)
T 3fym_A 53 FIRKYASVVNIEPNQLIQAHQDEIPSNQAEWDEVITVFNNNK-DLDYKSKSKEPIQLLVIMGITVLITLLLWI 124 (130)
T ss_dssp HHHHHHHHTTCCHHHHHHHTTTTSCCCCCCC------------------------------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcccchhHHHHHhcccc-cccccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3778888888887776665555444 3345666666644 44555555554 444555555555554443
No 5
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=45.98 E-value=90 Score=25.06 Aligned_cols=58 Identities=21% Similarity=0.306 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHHHHHhhh
Q 023714 103 KQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAE---QLKIEAEKARKDLTVVAKELSE 162 (278)
Q Consensus 103 kq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse---~L~iqa~ka~~~L~~~ake~~e 162 (278)
++=+++.++...||.+=....|++ +|.+.||.||.- .++....+|-.+|..+-.+..+
T Consensus 28 ~kE~~~q~~kiekmk~e~~dey~i--Kkq~evL~Et~~mipd~~~RL~~a~~~L~~~l~~~~~ 88 (116)
T 3mxz_A 28 EKEVEREAAKTADMKDKGADPYDL--KQQENVLGESRMMIPDCHKRLESALADLKSTLAELEE 88 (116)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhccCCHHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333445555566666544556776 778899999864 4456666777777776665544
No 6
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=41.95 E-value=80 Score=21.77 Aligned_cols=34 Identities=24% Similarity=0.274 Sum_probs=28.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 023714 95 AKESEEAWKQTLAAFREQAIKMQSVSQEAYEIYS 128 (278)
Q Consensus 95 ~ees~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys 128 (278)
.+|+++.|-.||..+-+|-.++..+-....++.+
T Consensus 9 ~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~ 42 (54)
T 1nhl_A 9 AIESQDAGIKTITMLDEQKEQLNRIEEGLDQINK 42 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHh
Confidence 4689999999999999998888887777666544
No 7
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=39.19 E-value=52 Score=24.50 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhh
Q 023714 105 TLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSED 163 (278)
Q Consensus 105 ~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e~ 163 (278)
....+.+--..|+++|.| |.|+|=| +|+++.||+..+|..+.+.+..|
T Consensus 11 l~~E~~~lk~E~~stSaQ--DeFAKWa---------KL~Rk~DKl~~ele~l~~~l~~~ 58 (65)
T 3sja_C 11 KVKERHELKEFNNSISAQ--DNYAKWT---------KNNRKLDSLDKEINNLKDEIQSE 58 (65)
T ss_dssp HHHHHHHHHHHHTTSCTT--TTHHHHH---------HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccchH--HHHHHHH---------HHHHHHHHHHHHHHHHHHHhhcc
Confidence 333333333456677754 6777764 49999999999999998888764
No 8
>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A
Probab=38.00 E-value=1.2e+02 Score=26.55 Aligned_cols=16 Identities=13% Similarity=0.229 Sum_probs=8.8
Q ss_pred HHHHhhHHHHHHHHhh
Q 023714 146 AEKARKDLTVVAKELS 161 (278)
Q Consensus 146 a~ka~~~L~~~ake~~ 161 (278)
.+++++.+..+++++.
T Consensus 77 l~~~~~~~~~L~~~l~ 92 (240)
T 1j1j_A 77 FGTVKTHLTSLKTKFP 92 (240)
T ss_dssp HHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHcc
Confidence 3344555666666664
No 9
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=37.79 E-value=1.4e+02 Score=26.31 Aligned_cols=37 Identities=19% Similarity=0.135 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHhhHHHHHHHHhh
Q 023714 125 EIYSKRATAILKET----------AEQLKIEAEKARKDLTVVAKELS 161 (278)
Q Consensus 125 ~vys~ka~~vL~et----------se~L~iqa~ka~~~L~~~ake~~ 161 (278)
..+|+|+...|... .++.+...+++++.+..+++++.
T Consensus 49 t~~sk~~I~~Lhr~~~~~~~~~~~~~eA~~~l~~i~~~~~~L~~~l~ 95 (249)
T 3axj_A 49 EHLSKEAQIKLQIIHSDLSQISAACGLARKQVELCAQKYQKLAELVP 95 (249)
T ss_dssp HHHHHHHHHHHGGGGTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667766555322 23333334445555666776665
No 10
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=31.14 E-value=95 Score=31.33 Aligned_cols=70 Identities=10% Similarity=0.153 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh---hhhhhhHhHHhh
Q 023714 97 ESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELS---EDGKKYLTEATE 173 (278)
Q Consensus 97 es~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~---e~gkeyl~~aae 173 (278)
+.+..-++.++.+|.+...+|.-++++|..|-.+ .|+||.....+. |+..+-.|+. +.-.+||..-.+
T Consensus 57 kqErDltkrINELKnqLEdlsKnsKdseqy~k~~--------~E~Lr~rq~q~~-dNdNtynE~S~ELRRrIqyLKekVd 127 (562)
T 3ghg_A 57 EVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNI--------MEILRGDFSSAN-NRDNTYNRVSEDLRSRIEVLKRKVI 127 (562)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH--------HHTTSSHHHHHH-HHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred hhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHH--------HHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888999999999988888888877433 344443333333 4444444444 234556555444
Q ss_pred cC
Q 023714 174 NN 175 (278)
Q Consensus 174 ns 175 (278)
|.
T Consensus 128 nQ 129 (562)
T 3ghg_A 128 EK 129 (562)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 11
>3rko_K NADH-quinone oxidoreductase subunit K; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=31.09 E-value=1.7e+02 Score=22.02 Aligned_cols=29 Identities=10% Similarity=0.249 Sum_probs=23.5
Q ss_pred hhHHHHHHHhhHHHHHhcCChhHHHHHHH
Q 023714 205 IPYGLLLTLGGFISFMVTGSIPAIRFGVI 233 (278)
Q Consensus 205 ipYG~Lva~GGiiGY~kaGS~~SL~aGl~ 233 (278)
+..++++.+-|+.|++.+.+......++=
T Consensus 8 ~~~~~~lf~iGl~g~~~r~~ll~~LlslE 36 (100)
T 3rko_K 8 LILAAILFVLGLTGLVIRRNLLFMLIGLE 36 (100)
T ss_dssp HHHHHHHHHHHHHHHHHCCBHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577888899999999999988877653
No 12
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=30.15 E-value=1.3e+02 Score=23.59 Aligned_cols=58 Identities=9% Similarity=0.144 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhh-----hhhhHhHHhhcCchh
Q 023714 121 QEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSED-----GKKYLTEATENNPEV 178 (278)
Q Consensus 121 ~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e~-----gkeyl~~aaensp~v 178 (278)
++..+..-+.+..+.+..++++....+..+..|..+|..+... =+++|....+++|.+
T Consensus 8 ~~~~~~~~~~~~~~a~~~a~~i~~~l~~~~~~l~~la~~~~~~~~~~~~~~~L~~~~~~~~~~ 70 (217)
T 4dah_A 8 DTIAAEHKQEASVLLNLHRNKINYLIGETMARMTSLSIAIDRPVDIKKMQSILEKTFDSEPRF 70 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHTTCTTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCcc
Confidence 3334444455556666677777778888888888888865431 133455555555543
No 13
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=29.22 E-value=54 Score=22.62 Aligned_cols=17 Identities=41% Similarity=0.456 Sum_probs=8.2
Q ss_pred ChhHHHHHHHHHHHHHH
Q 023714 224 SIPAIRFGVILGGTLLA 240 (278)
Q Consensus 224 S~~SL~aGl~~G~lLL~ 240 (278)
+++++++|++-|.++++
T Consensus 8 ~~~aIA~gVVgGv~~v~ 24 (44)
T 2l2t_A 8 RTPLIAAGVIGGLFILV 24 (44)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CcceEEEeehHHHHHHH
Confidence 44555555554444433
No 14
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=29.08 E-value=1.7e+02 Score=21.48 Aligned_cols=61 Identities=16% Similarity=0.162 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhH
Q 023714 100 EAWKQTLAAFREQAIKMQSV---SQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYL 168 (278)
Q Consensus 100 E~Wkq~L~~fkeqa~kmq~~---s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e~gkeyl 168 (278)
..=.+.|+.++.++..+++. ..+|-+.|... ..+.+.-+++.+.-|..++.-+..-+..|-
T Consensus 28 ~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~--------~~~W~~~a~~l~~~L~~i~~~l~~a~~~y~ 91 (103)
T 4i0x_B 28 EFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQA--------HKEWMDAARELVEGLSQMEEAARTAHGAYS 91 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788888888888877 66666666543 455666667777777777777777666664
No 15
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A
Probab=28.28 E-value=44 Score=30.19 Aligned_cols=65 Identities=14% Similarity=0.186 Sum_probs=35.4
Q ss_pred hHHHhhcCCCCcccccccccccceechhHHHHHHHhhHHHHHhcCCh-------hHHHHHHHHHHHHHHHHH
Q 023714 179 KEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSI-------PAIRFGVILGGTLLALSI 243 (278)
Q Consensus 179 K~i~et~~~~~e~~~~~skmHDFclgipYG~Lva~GGiiGY~kaGS~-------~SL~aGl~~G~lLL~aGy 243 (278)
+|++|.....+++-.+.+...=|+.++.=|+++++|+++-....... ..+++|++|+..|++.-+
T Consensus 13 ~e~~~~~~~~g~~K~~~~~~~~~~~~ilAG~~I~~g~~~~~~v~~~~~~~~~g~~~ll~g~~F~vGL~lVvl 84 (285)
T 3kcu_A 13 AAMAKVAEEAGVYKATKHPLKTFYLAITAGVFISIAFVFYITATTGTGTMPFGMAKLVGGICFSLGLILCVV 84 (285)
T ss_dssp ----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSCHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHH
Confidence 46677766666544556666668889988999999988766655433 268899998877665433
No 16
>1a87_A Colicin N; bacteriocin, toxin, pore-forming activity; 3.10A {Escherichia coli K12} SCOP: f.1.1.1
Probab=28.06 E-value=3.9e+02 Score=25.25 Aligned_cols=85 Identities=15% Similarity=0.162 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhHHHHHHH----HhhhhhhhhHhHH
Q 023714 103 KQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLK-------IEAEKARKDLTVVAK----ELSEDGKKYLTEA 171 (278)
Q Consensus 103 kq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~-------iqa~ka~~~L~~~ak----e~~e~gkeyl~~a 171 (278)
++.-++.+.-+.-|-++-++..|-|-+|+..+-+|-+++++ +-.|.|-+.+.-... -+...-++.|..|
T Consensus 124 ~~Ek~aLkdAse~ia~fy~kIsE~~GeKYk~lAkeIA~~lknfKGKkIRs~dDALksfEKyk~nlnkK~nakDR~AI~nA 203 (321)
T 1a87_A 124 KNEKEALLKASELVSGMGDKLGEYLGVKYKNVAKEVANDIKNFHGRNIRSYNEAMASLNKVLANPKMKVNKSDKDAIVNA 203 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTCCGGGCCCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHhhChhhhcchhhHHHHHHH
Confidence 34455677777889999999999999999999999988882 224455444444333 4445556777766
Q ss_pred hhcCchhhHHHhhcCCC
Q 023714 172 TENNPEVKEIVETFTLP 188 (278)
Q Consensus 172 aensp~vK~i~et~~~~ 188 (278)
-|+- +.+|+.+-|...
T Consensus 204 Lesv-d~~dmA~NL~kf 219 (321)
T 1a87_A 204 WKQV-NAKDMANKIGNL 219 (321)
T ss_dssp HHTC-CHHHHHHHHHTT
T ss_pred HHHc-CHHHHHHHHHHH
Confidence 6643 556666655544
No 17
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=27.96 E-value=65 Score=20.65 Aligned_cols=19 Identities=32% Similarity=0.240 Sum_probs=11.1
Q ss_pred cCChhHHHHHHHHHHHHHH
Q 023714 222 TGSIPAIRFGVILGGTLLA 240 (278)
Q Consensus 222 aGS~~SL~aGl~~G~lLL~ 240 (278)
.++++.++.|++.|.++++
T Consensus 9 ~~~~~~I~~~vv~Gv~ll~ 27 (41)
T 2k9y_A 9 GSGNLAVIGGVAVGVVLLL 27 (41)
T ss_dssp CCSSTHHHHHHHHHHHHHH
T ss_pred CCceEEEEeehhHHHHHHH
Confidence 4455555666666666555
No 18
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=27.72 E-value=76 Score=27.99 Aligned_cols=52 Identities=10% Similarity=0.087 Sum_probs=32.7
Q ss_pred echhHHHHHHHhhHHHHHhcCChhHHHHHH--HHHHHHHHHHHhhhhhhcCCCC
Q 023714 203 LGIPYGLLLTLGGFISFMVTGSIPAIRFGV--ILGGTLLALSIASLRSHKKGKT 254 (278)
Q Consensus 203 lgipYG~Lva~GGiiGY~kaGS~~SL~aGl--~~G~lLL~aGygSLk~~k~gk~ 254 (278)
+++.-.+++++..+++++.+||..=+.-|+ +.-.+-.++.+.+++..+++.+
T Consensus 17 ~si~~n~~l~~~k~~ag~~sgS~ALlaDa~hsl~D~~s~~i~l~~~~~s~k~~d 70 (306)
T 3j1z_P 17 ASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPAD 70 (306)
T ss_dssp HHHHHHHHHTHHHHHTCTTSSSSCCCTHHHHTTHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 477778888889999999999986443332 1222223344555666666543
No 19
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=27.12 E-value=63 Score=29.27 Aligned_cols=53 Identities=17% Similarity=0.274 Sum_probs=41.5
Q ss_pred HhhhhhHHH----HHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHhhhhhhhh
Q 023714 115 KMQSVSQEA----YEIYSKRATAILKETAEQL----KIEAEKARKDLTVVAKELSEDGKKY 167 (278)
Q Consensus 115 kmq~~s~ea----Y~vys~ka~~vL~etse~L----~iqa~ka~~~L~~~ake~~e~gkey 167 (278)
-|.+.+.+. |.--|+||...|+|--|-+ ....|+||++.-.+++.+.++|+=-
T Consensus 210 ALKGa~~elrekil~nmS~Raa~~l~eele~~GpVr~~dVE~Aq~~Iv~~~R~L~e~GeI~ 270 (279)
T 3pkr_A 210 ALKTSTKDLTDKFLNNMSSRAAEQFVEEMQYLGAVKIKDVDVAQRKIIEIVQSLQEKGVIQ 270 (279)
T ss_dssp HTTTSCHHHHHHHHTTSCHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHcCCCHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEE
Confidence 344444443 4456899999999988876 5689999999999999999999643
No 20
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=26.69 E-value=26 Score=24.14 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=11.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHhh
Q 023714 223 GSIPAIRFGVILGGTLLALSIAS 245 (278)
Q Consensus 223 GS~~SL~aGl~~G~lLL~aGygS 245 (278)
.+++++++|++.|.+++++-.+.
T Consensus 8 s~~~~IA~gVVgGv~~~~ii~~~ 30 (44)
T 2ks1_B 8 PKIPSIATGMVGALLLLLVVALG 30 (44)
T ss_dssp SCSSSSTHHHHHHHHHHHHHHHH
T ss_pred CCcceEEeehhHHHHHHHHHHHH
Confidence 34555556666555544433333
No 21
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=25.24 E-value=4.1e+02 Score=26.19 Aligned_cols=15 Identities=27% Similarity=0.184 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHhh
Q 023714 231 GVILGGTLLALSIAS 245 (278)
Q Consensus 231 Gl~~G~lLL~aGygS 245 (278)
|+-.|.+|+.+|++.
T Consensus 569 ~~p~~~~~~~~~~~~ 583 (695)
T 2j69_A 569 LGPIGFALLGLGVGF 583 (695)
T ss_dssp HHHHHHHHHHTTTTS
T ss_pred hhhHHHHHhhhhhhh
Confidence 455555556666663
No 22
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=25.14 E-value=1.8e+02 Score=26.91 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 023714 104 QTLAAFREQAIKMQSVSQEAYEIYSKRA 131 (278)
Q Consensus 104 q~L~~fkeqa~kmq~~s~eaY~vys~ka 131 (278)
|.+..+. .|++..-.+.|||+.|++|.
T Consensus 210 ~~v~~ln-~a~~ge~~~~~a~e~~a~~~ 236 (365)
T 3fse_A 210 DIVRGLN-TALGGERYSLEALEKYTEKE 236 (365)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHH-HHhhcChhHHHHHHHHHHhc
Confidence 3444443 56778888899999999997
No 23
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=24.18 E-value=2.2e+02 Score=21.06 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q 023714 97 ESEEAWKQTLAAFREQAIKMQS 118 (278)
Q Consensus 97 es~E~Wkq~L~~fkeqa~kmq~ 118 (278)
|+++.|-.||..+-+|-.+|..
T Consensus 34 Ete~~G~~Tl~~L~~Q~Eql~r 55 (79)
T 1n7s_C 34 ESKDAGIRTLVMLDEQGEQLDR 55 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHH
Confidence 4444444444444444444433
No 24
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=23.20 E-value=53 Score=25.19 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 023714 229 RFGVILGGTLLALSIASL 246 (278)
Q Consensus 229 ~aGl~~G~lLL~aGygSL 246 (278)
+.|++|+++|+++|+.-+
T Consensus 21 igGLifA~vLfi~GI~ii 38 (74)
T 2zxe_G 21 VVGLIVAAVLCVIGIIIL 38 (74)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eccchhHHHHHHHHHHHH
Confidence 467788888888877544
No 25
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=23.16 E-value=59 Score=24.49 Aligned_cols=17 Identities=41% Similarity=0.473 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHhh
Q 023714 229 RFGVILGGTLLALSIAS 245 (278)
Q Consensus 229 ~aGl~~G~lLL~aGygS 245 (278)
+.|++|+++|+++|+.-
T Consensus 19 igGLifA~vLfi~GI~i 35 (67)
T 2jp3_A 19 LGGLIFGGLLCIAGIAL 35 (67)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ecchhhHHHHHHHHHHH
Confidence 45677777777777653
No 26
>2e0g_A Chromosomal replication initiator protein DNAA; domain structure, structural genomics, NPPSFA; NMR {Escherichia coli K12}
Probab=22.96 E-value=16 Score=27.50 Aligned_cols=26 Identities=15% Similarity=0.534 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 023714 99 EEAWKQTLAAFREQAIKMQSVSQEAYEIYSKR 130 (278)
Q Consensus 99 ~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~k 130 (278)
++.|.++|+.+|++ ++.+.|+-|=+.
T Consensus 2 ~~~W~~vl~~Lk~~------l~~~~f~tWi~p 27 (107)
T 2e0g_A 2 LSLWQQCLARLQDE------LPATEFSMWIRP 27 (107)
T ss_dssp CCHHHHHHHHHHHH------CSCCHHHHTTTT
T ss_pred hHHHHHHHHHHHHH------CCHHHHHHHHHh
Confidence 45799999999865 677788877654
No 27
>3kly_A Putative formate transporter 1; membrane protein, channel, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Vibrio cholerae} PDB: 3klz_A*
Probab=22.86 E-value=49 Score=29.81 Aligned_cols=67 Identities=16% Similarity=0.235 Sum_probs=39.8
Q ss_pred hHHHhhcCCCCcccccccccccceechhHHHHHHHhhHHHHHhcCCh-------hHHHHHHHHHHHHHHHHHhh
Q 023714 179 KEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSI-------PAIRFGVILGGTLLALSIAS 245 (278)
Q Consensus 179 K~i~et~~~~~e~~~~~skmHDFclgipYG~Lva~GGiiGY~kaGS~-------~SL~aGl~~G~lLL~aGygS 245 (278)
+|++|.....+++-.+.+...=|+.++-=|+++++|+++-....... ..+++|++|+..|++.-++.
T Consensus 12 ~e~~~~~~~~g~~K~~~~~~~~~~~~~~AG~~I~~g~~~~~~v~~~~~~~~~g~~~ll~g~~F~vGL~lVvl~g 85 (280)
T 3kly_A 12 PQMAERAAITGEGKAKKAAYKSFLLAISAGIQIGIAFVFYTVVTTGAHDMPYGVTKLLGGLAFSLGLILVVITG 85 (280)
T ss_dssp ----------CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHHcc
Confidence 46666666665444445556668888888999999888766554322 26889999988877766544
No 28
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=22.59 E-value=1.2e+02 Score=23.98 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=28.4
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhh
Q 023714 114 IKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSE 162 (278)
Q Consensus 114 ~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e 162 (278)
..|+++|.| |.|+|=| +|+++.||+.++|..+.+.+..
T Consensus 37 ~E~~stSaQ--DeFAKWa---------KL~Rk~DKl~~ele~l~~~l~~ 74 (93)
T 3sjb_C 37 EFNNSISAQ--DNYAKWT---------KNNRKLDSLDKEINNLKDEIQS 74 (93)
T ss_dssp HHHTTSCTT--TCHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccchH--HHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 445666644 6677764 4899999999999988887765
No 29
>1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G*
Probab=22.36 E-value=59 Score=24.31 Aligned_cols=41 Identities=29% Similarity=0.416 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhhcCchh
Q 023714 134 ILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNPEV 178 (278)
Q Consensus 134 vL~etse~L~iqa~ka~~~L~~~ake~~e~gkeyl~~aaensp~v 178 (278)
-|+...||||.|++--|.-.+..|+++ +.|...-+++-|-|
T Consensus 21 ~lr~~veqLr~el~~~RikVS~aa~~L----~~Yce~~~~~DpLl 61 (73)
T 1got_G 21 KLKMEVDQLKKEVTLERMLVSKCCEEF----RDYVEERSGEDPLV 61 (73)
T ss_dssp HHHHHHHHHHHHTTCCCCCHHHHHHHH----HHHHHHHGGGCHHH
T ss_pred HHHHHHHHHHHHHCCchhhHHHHHHHH----HHHHHhcCCCCCCc
Confidence 456677999999999898889888888 55887777777743
No 30
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=21.91 E-value=64 Score=24.63 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHh
Q 023714 229 RFGVILGGTLLALSIA 244 (278)
Q Consensus 229 ~aGl~~G~lLL~aGyg 244 (278)
+.|++|+++|+++|+.
T Consensus 18 iGGLifA~vLfi~GI~ 33 (72)
T 2jo1_A 18 IGGLVIAGILFILGIL 33 (72)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHH
Confidence 4566677776666664
No 31
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=21.32 E-value=2.9e+02 Score=21.87 Aligned_cols=57 Identities=14% Similarity=0.212 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhh--hhhhHhHHhhcCchhhHHHhhc
Q 023714 126 IYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSED--GKKYLTEATENNPEVKEIVETF 185 (278)
Q Consensus 126 vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e~--gkeyl~~aaensp~vK~i~et~ 185 (278)
-||.++...|.|..+ .+++..-+||...|+-.|-. .-|.+.+|+..+|.+.+.+..+
T Consensus 39 ~vs~~~i~aL~E~~~---~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~~l~~~l~~~ 97 (107)
T 3b0b_B 39 LFSKQTVAAISEITF---RQCENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYITQK 97 (107)
T ss_dssp EECHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCHHHHHHHHHH
Confidence 366666677766644 44566667888888877653 2478899999999776666554
No 32
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=21.19 E-value=2.3e+02 Score=20.09 Aligned_cols=34 Identities=12% Similarity=0.173 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 023714 95 AKESEEAWKQTLAAFREQAIKMQSVSQEAYEIYS 128 (278)
Q Consensus 95 ~ees~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys 128 (278)
..|+++.|-++|..+..|-..++.....+.++-+
T Consensus 18 ~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~ 51 (65)
T 1gl2_C 18 ATETDQIGTEIIEELGEQRDQLERTKSRLVNTNE 51 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHh
Confidence 4689999999999999999999888777776543
No 33
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=20.92 E-value=2e+02 Score=24.98 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=19.3
Q ss_pred HHHhhHHHHHHHHhhhhhhhhHhHHhhcCc
Q 023714 147 EKARKDLTVVAKELSEDGKKYLTEATENNP 176 (278)
Q Consensus 147 ~ka~~~L~~~ake~~e~gkeyl~~aaensp 176 (278)
+.++......+++.++.|++.+....+-+|
T Consensus 277 ~a~~~v~~~~~~~~~~~g~~~~~~~~~~~~ 306 (312)
T 2xwv_A 277 ESMKPYYAEFVKQTGQKGESALKQIEAINP 306 (312)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHhCc
Confidence 334444445566677778887777777776
No 34
>4fhr_B Flagellar motor switch protein FLIG; motor protein; 1.93A {Thermotoga maritima} PDB: 1lkv_X 3ajc_A 1qc7_A 3soh_B
Probab=20.21 E-value=1e+02 Score=26.70 Aligned_cols=42 Identities=31% Similarity=0.516 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHhhhhhh
Q 023714 124 YEIYSKRATAILKETAEQL----KIEAEKARKDLTVVAKELSEDGK 165 (278)
Q Consensus 124 Y~vys~ka~~vL~etse~L----~iqa~ka~~~L~~~ake~~e~gk 165 (278)
+.--|+||...|+|--|-+ ....|.||++.-.+++.+.++|.
T Consensus 166 l~nmS~Raa~~l~ee~e~~gpvr~~dVe~Aq~~Iv~~~r~L~~~Ge 211 (216)
T 4fhr_B 166 FKNMSKRAAALLKDELEYMGPVRLKDVEEAQQKIINIIRRLEEAGE 211 (216)
T ss_dssp HTTSCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 4556899999999877654 36889999999999999999996
No 35
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=20.16 E-value=94 Score=28.65 Aligned_cols=42 Identities=33% Similarity=0.504 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHhhhhhh
Q 023714 124 YEIYSKRATAILKETAEQL----KIEAEKARKDLTVVAKELSEDGK 165 (278)
Q Consensus 124 Y~vys~ka~~vL~etse~L----~iqa~ka~~~L~~~ake~~e~gk 165 (278)
|.--|+||...|+|--|-+ ....|+||++.-.+++.+.++|+
T Consensus 279 l~nmS~Raa~~l~eele~~GpVr~~dVE~Aq~~Iv~~~r~L~e~Ge 324 (329)
T 3hjl_A 279 LSNMSKRAAKLFLEDMEALGPVKKSEIEKAQRQVVNIIRKMIDEGK 324 (329)
T ss_dssp HTTSCHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 4456899999999988776 56899999999999999999996
No 36
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=20.11 E-value=3.2e+02 Score=21.41 Aligned_cols=53 Identities=19% Similarity=0.343 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHHH
Q 023714 103 KQTLAAFREQAIKMQSVSQ-EAYEIYSKRATAILKETAE---QLKIEAEKARKDLTVVA 157 (278)
Q Consensus 103 kq~L~~fkeqa~kmq~~s~-eaY~vys~ka~~vL~etse---~L~iqa~ka~~~L~~~a 157 (278)
.+=+++.++...||.+-.. ..|++ ++.+.||.||.- ..+....+|-.+|..+-
T Consensus 24 ~kE~~~q~~riek~k~~~~~dey~i--Kkq~evl~Et~~mipd~~~Rl~~a~~~L~~~l 80 (106)
T 1qsd_A 24 QQELKDQEAHVAKLKEDKSVDPYDL--KKQEEVLDDTKRLLPTLYEKIREFKEDLEQFL 80 (106)
T ss_dssp HHHHHHHHHHHHHHHHCTTSCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3445555666666665544 56776 778899999864 34555666666776655
Done!