Query 023716
Match_columns 278
No_of_seqs 225 out of 1814
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 06:07:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023716.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023716hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1559 Gamma-glutamyl hydrola 100.0 4.4E-65 9.6E-70 439.7 16.5 270 1-278 1-270 (340)
2 cd01747 GATase1_Glutamyl_Hydro 100.0 1.9E-43 4.1E-48 319.9 18.0 212 63-278 1-214 (273)
3 PF07722 Peptidase_C26: Peptid 100.0 6.6E-42 1.4E-46 300.6 9.6 197 61-277 1-217 (217)
4 COG2071 Predicted glutamine am 100.0 5.3E-40 1.1E-44 286.0 15.8 196 58-278 1-219 (243)
5 PRK11366 puuD gamma-glutamyl-g 100.0 7.4E-34 1.6E-38 255.0 18.9 193 57-278 4-225 (254)
6 cd01745 GATase1_2 Subgroup of 99.9 4E-27 8.7E-32 202.6 15.5 156 63-278 1-173 (189)
7 cd01744 GATase1_CPSase Small c 99.9 2.2E-26 4.7E-31 196.2 17.4 153 89-278 11-163 (178)
8 PRK08007 para-aminobenzoate sy 99.9 1.3E-26 2.9E-31 199.1 15.2 164 81-278 7-171 (187)
9 TIGR00888 guaA_Nterm GMP synth 99.9 1.3E-26 2.8E-31 199.1 15.0 156 88-278 12-167 (188)
10 PRK06895 putative anthranilate 99.9 1.8E-26 3.9E-31 198.7 15.6 163 82-278 10-172 (190)
11 PRK07765 para-aminobenzoate sy 99.9 2.6E-26 5.5E-31 201.3 16.6 160 88-278 14-175 (214)
12 PRK12564 carbamoyl phosphate s 99.9 7.1E-26 1.5E-30 211.9 19.7 183 43-278 156-342 (360)
13 TIGR00566 trpG_papA glutamine 99.9 5.4E-26 1.2E-30 195.5 16.6 164 82-278 8-172 (188)
14 cd01743 GATase1_Anthranilate_S 99.9 6.6E-26 1.4E-30 194.0 16.7 161 83-278 8-170 (184)
15 PRK05670 anthranilate synthase 99.9 5.1E-26 1.1E-30 195.6 15.7 162 83-278 9-171 (189)
16 COG0512 PabA Anthranilate/para 99.9 9.4E-26 2E-30 191.1 16.8 165 81-278 9-174 (191)
17 cd01742 GATase1_GMP_Synthase T 99.9 3.1E-26 6.8E-31 195.1 13.7 156 88-278 12-167 (181)
18 TIGR01368 CPSaseIIsmall carbam 99.9 2.1E-25 4.6E-30 208.4 19.2 181 44-278 153-338 (358)
19 PRK05637 anthranilate synthase 99.9 2.4E-25 5.1E-30 194.3 17.7 174 83-278 11-188 (208)
20 PRK08857 para-aminobenzoate sy 99.9 5.1E-25 1.1E-29 190.1 16.5 166 82-278 8-176 (193)
21 PLN02335 anthranilate synthase 99.9 4E-25 8.7E-30 194.8 15.5 161 88-278 32-196 (222)
22 PRK06774 para-aminobenzoate sy 99.9 6.2E-25 1.4E-29 189.2 15.5 166 82-278 8-175 (191)
23 PRK00758 GMP synthase subunit 99.9 5.7E-25 1.2E-29 188.2 14.2 151 88-278 13-164 (184)
24 cd01746 GATase1_CTP_Synthase T 99.9 1.9E-24 4.2E-29 191.8 17.5 173 94-278 27-220 (235)
25 PRK07649 para-aminobenzoate/an 99.9 8.7E-25 1.9E-29 189.1 14.9 163 82-278 8-171 (195)
26 CHL00101 trpG anthranilate syn 99.9 2.8E-24 6E-29 185.2 14.8 162 83-278 9-172 (190)
27 PLN02347 GMP synthetase 99.9 6.5E-24 1.4E-28 207.8 17.0 160 88-278 24-185 (536)
28 PRK06186 hypothetical protein; 99.9 2E-23 4.2E-28 183.4 16.3 192 61-278 2-208 (229)
29 PRK12838 carbamoyl phosphate s 99.9 3.4E-23 7.4E-28 193.3 18.9 181 44-278 151-332 (354)
30 PF00117 GATase: Glutamine ami 99.9 7.8E-24 1.7E-28 181.7 13.4 170 82-278 6-175 (192)
31 cd01741 GATase1_1 Subgroup of 99.9 1.4E-23 3.1E-28 179.8 13.4 160 87-277 13-180 (188)
32 CHL00197 carA carbamoyl-phosph 99.9 3.5E-23 7.6E-28 194.6 16.4 152 88-278 204-356 (382)
33 PRK13566 anthranilate synthase 99.9 3.8E-23 8.3E-28 208.3 15.8 175 58-278 524-698 (720)
34 PRK00074 guaA GMP synthase; Re 99.9 5.2E-23 1.1E-27 201.2 15.2 154 88-278 17-172 (511)
35 PLN02771 carbamoyl-phosphate s 99.9 1.4E-22 2.9E-27 191.4 16.0 154 87-278 251-404 (415)
36 TIGR00337 PyrG CTP synthase. C 99.9 5.4E-22 1.2E-26 191.7 18.6 195 59-278 288-508 (525)
37 PRK09065 glutamine amidotransf 99.9 2.3E-22 5E-27 178.9 14.4 157 92-278 29-188 (237)
38 PRK14607 bifunctional glutamin 99.9 2.2E-22 4.8E-27 197.8 14.6 163 81-278 7-172 (534)
39 PRK07567 glutamine amidotransf 99.9 4.8E-22 1E-26 177.4 15.2 161 88-278 18-192 (242)
40 TIGR01815 TrpE-clade3 anthrani 99.9 7.2E-22 1.6E-26 198.8 17.6 177 56-278 512-688 (717)
41 COG0518 GuaA GMP synthase - Gl 99.9 3.5E-22 7.6E-27 172.9 12.0 159 88-278 15-177 (198)
42 PRK06490 glutamine amidotransf 99.9 5.7E-21 1.2E-25 170.1 17.7 157 88-278 22-181 (239)
43 COG0505 CarA Carbamoylphosphat 99.9 1.8E-21 3.9E-26 178.0 14.7 154 87-277 190-343 (368)
44 PRK05380 pyrG CTP synthetase; 99.9 4.1E-21 8.8E-26 185.7 17.1 197 59-278 287-508 (533)
45 COG0118 HisH Glutamine amidotr 99.9 6E-21 1.3E-25 162.8 15.4 165 88-278 15-187 (204)
46 PLN02889 oxo-acid-lyase/anthra 99.9 1.3E-20 2.9E-25 192.2 17.3 174 80-278 88-318 (918)
47 PRK13525 glutamine amidotransf 99.9 2.2E-20 4.8E-25 160.8 15.6 168 61-278 2-173 (189)
48 PRK05665 amidotransferase; Pro 99.8 1.3E-20 2.7E-25 168.0 14.3 158 90-278 28-188 (240)
49 PRK09522 bifunctional glutamin 99.8 6.5E-21 1.4E-25 186.8 13.4 162 82-278 10-173 (531)
50 PRK13170 hisH imidazole glycer 99.8 5.7E-20 1.2E-24 159.1 15.0 160 88-278 14-181 (196)
51 PRK08250 glutamine amidotransf 99.8 4.9E-20 1.1E-24 163.8 14.0 160 88-278 15-182 (235)
52 PRK07053 glutamine amidotransf 99.8 1.5E-19 3.2E-24 160.6 16.5 159 88-278 17-180 (234)
53 PLN02327 CTP synthase 99.8 1.6E-19 3.4E-24 175.1 17.8 194 60-278 297-528 (557)
54 PRK13152 hisH imidazole glycer 99.8 1.1E-19 2.4E-24 157.8 13.6 163 88-278 13-186 (201)
55 PRK13146 hisH imidazole glycer 99.8 1.3E-19 2.9E-24 158.3 13.4 159 88-278 15-192 (209)
56 PRK13181 hisH imidazole glycer 99.8 2E-19 4.3E-24 155.9 14.1 158 88-278 13-184 (199)
57 cd01748 GATase1_IGP_Synthase T 99.8 2E-19 4.3E-24 155.7 11.9 154 88-278 12-185 (198)
58 TIGR01823 PabB-fungal aminodeo 99.8 1E-18 2.3E-23 177.2 18.1 162 89-278 20-186 (742)
59 PRK13527 glutamine amidotransf 99.8 8.4E-19 1.8E-23 152.1 14.4 172 62-278 2-183 (200)
60 PRK13143 hisH imidazole glycer 99.8 1.4E-18 3.1E-23 150.8 15.0 157 88-278 14-182 (200)
61 CHL00188 hisH imidazole glycer 99.8 1.7E-18 3.7E-23 151.4 14.8 160 88-278 15-194 (210)
62 PRK13141 hisH imidazole glycer 99.8 1.2E-18 2.5E-23 151.7 12.6 154 88-278 13-186 (205)
63 cd01749 GATase1_PB Glutamine A 99.8 2.7E-18 5.8E-23 147.1 12.6 165 63-278 1-172 (183)
64 TIGR01737 FGAM_synth_I phospho 99.8 3.9E-18 8.4E-23 150.9 13.3 180 62-278 2-205 (227)
65 COG0504 PyrG CTP synthase (UTP 99.8 8.9E-18 1.9E-22 158.9 16.1 194 61-278 289-508 (533)
66 TIGR03800 PLP_synth_Pdx2 pyrid 99.8 2.3E-17 4.9E-22 141.5 15.5 165 63-278 2-172 (184)
67 TIGR01855 IMP_synth_hisH imida 99.8 1.4E-17 3E-22 144.1 14.2 164 88-278 12-181 (196)
68 PRK14004 hisH imidazole glycer 99.8 3E-17 6.4E-22 143.6 15.3 74 88-173 13-90 (210)
69 KOG0026 Anthranilate synthase, 99.7 2.8E-17 6E-22 135.5 13.0 178 56-278 15-197 (223)
70 PRK13142 hisH imidazole glycer 99.7 4.6E-17 1E-21 140.1 12.7 156 88-278 13-172 (192)
71 PLN02617 imidazole glycerol ph 99.7 1.7E-15 3.7E-20 148.6 18.5 179 59-278 5-194 (538)
72 KOG2387 CTP synthase (UTP-ammo 99.6 2.6E-15 5.6E-20 140.2 14.1 196 59-278 297-529 (585)
73 PLN02832 glutamine amidotransf 99.6 4.2E-15 9E-20 132.5 14.8 82 62-172 3-89 (248)
74 KOG1224 Para-aminobenzoate (PA 99.6 4.4E-15 9.5E-20 141.2 12.2 171 81-278 22-200 (767)
75 KOG0370 Multifunctional pyrimi 99.6 4.5E-15 9.9E-20 148.3 12.8 151 88-278 184-334 (1435)
76 KOG1622 GMP synthase [Nucleoti 99.6 1.2E-15 2.6E-20 142.7 6.2 149 91-278 33-187 (552)
77 PRK03619 phosphoribosylformylg 99.6 4.8E-14 1E-18 124.1 13.7 90 62-175 2-101 (219)
78 PRK05368 homoserine O-succinyl 99.6 3.8E-14 8.3E-19 129.7 12.2 135 118-278 98-238 (302)
79 KOG3179 Predicted glutamine sy 99.5 8.1E-14 1.7E-18 118.6 10.7 161 88-278 28-194 (245)
80 PRK01175 phosphoribosylformylg 99.4 4.7E-12 1E-16 114.2 15.5 95 58-171 1-105 (261)
81 cd01740 GATase1_FGAR_AT Type 1 99.4 3.7E-12 8E-17 113.5 12.0 94 63-175 1-104 (238)
82 PRK13526 glutamine amidotransf 99.3 4.7E-11 1E-15 101.5 15.1 155 61-277 3-165 (179)
83 COG0047 PurL Phosphoribosylfor 99.3 5.3E-11 1.1E-15 103.6 14.8 88 60-171 2-97 (231)
84 KOG0623 Glutamine amidotransfe 99.2 6E-11 1.3E-15 108.3 9.5 162 88-278 15-192 (541)
85 COG0311 PDX2 Predicted glutami 99.2 1.4E-09 3E-14 91.8 14.5 85 62-173 2-90 (194)
86 PF13507 GATase_5: CobB/CobQ-l 98.9 1.5E-09 3.3E-14 97.7 6.4 93 60-171 1-106 (259)
87 PF01174 SNO: SNO glutamine am 98.9 1.5E-09 3.1E-14 92.4 5.2 74 88-173 9-86 (188)
88 TIGR01857 FGAM-synthase phosph 98.8 1.7E-07 3.6E-12 99.5 15.9 96 58-171 975-1090(1239)
89 cd01750 GATase1_CobQ Type 1 gl 98.7 6.2E-08 1.3E-12 83.7 7.4 74 88-173 13-90 (194)
90 TIGR01735 FGAM_synt phosphorib 98.6 1.9E-07 4.1E-12 100.2 11.9 93 58-169 1053-1158(1310)
91 KOG3210 Imidazoleglycerol-phos 98.6 2.8E-07 6E-12 76.8 10.0 54 116-174 53-110 (226)
92 PRK05297 phosphoribosylformylg 98.6 4.6E-07 9.9E-12 97.5 13.8 94 59-171 1034-1140(1290)
93 PLN03206 phosphoribosylformylg 98.6 5.1E-07 1.1E-11 96.6 14.0 96 58-171 1035-1142(1307)
94 cd03130 GATase1_CobB Type 1 gl 98.6 1.9E-07 4E-12 81.0 8.6 79 84-172 10-92 (198)
95 PRK06278 cobyrinic acid a,c-di 98.4 7.2E-07 1.6E-11 86.9 7.9 72 89-172 10-82 (476)
96 PF04204 HTS: Homoserine O-suc 98.4 3.5E-06 7.5E-11 77.0 10.7 132 118-277 97-236 (298)
97 PHA03366 FGAM-synthase; Provis 98.3 8E-06 1.7E-10 88.0 14.8 95 58-171 1026-1133(1304)
98 TIGR01739 tegu_FGAM_synt herpe 98.3 1.8E-05 3.8E-10 85.0 16.0 95 58-171 927-1034(1202)
99 cd03131 GATase1_HTS Type 1 glu 98.2 1.7E-06 3.7E-11 73.6 5.0 54 117-175 60-118 (175)
100 cd01653 GATase1 Type 1 glutami 98.2 7.7E-06 1.7E-10 61.0 7.4 76 88-168 15-92 (115)
101 PRK01077 cobyrinic acid a,c-di 98.1 1.1E-05 2.3E-10 78.5 9.4 93 59-173 244-340 (451)
102 cd03146 GAT1_Peptidase_E Type 98.1 2.7E-05 5.9E-10 68.2 9.5 96 58-171 29-130 (212)
103 TIGR01001 metA homoserine O-su 98.0 1.8E-05 3.8E-10 72.1 7.3 132 118-277 98-236 (300)
104 cd03128 GAT_1 Type 1 glutamine 98.0 2.3E-05 5E-10 55.8 6.7 76 88-168 15-92 (92)
105 TIGR00379 cobB cobyrinic acid 98.0 3E-05 6.5E-10 75.3 8.7 91 60-172 244-338 (449)
106 PRK00784 cobyric acid synthase 97.9 2E-05 4.3E-10 77.3 6.9 72 89-172 266-342 (488)
107 PF07685 GATase_3: CobB/CobQ-l 97.6 5.4E-05 1.2E-09 63.2 3.5 53 116-173 4-60 (158)
108 PRK13896 cobyrinic acid a,c-di 97.6 0.00022 4.9E-09 68.9 8.2 87 61-172 234-325 (433)
109 TIGR00313 cobQ cobyric acid sy 97.2 0.00061 1.3E-08 66.7 6.1 51 117-172 282-336 (475)
110 PRK05282 (alpha)-aspartyl dipe 97.2 0.0016 3.4E-08 58.0 7.9 98 59-172 30-130 (233)
111 PRK11780 isoprenoid biosynthes 97.1 0.0026 5.6E-08 56.0 8.9 78 90-172 25-145 (217)
112 cd03133 GATase1_ES1 Type 1 glu 97.1 0.0029 6.2E-08 55.6 8.8 80 89-173 21-143 (213)
113 TIGR01382 PfpI intracellular p 97.0 0.0048 1E-07 51.2 9.0 78 89-171 17-108 (166)
114 cd03144 GATase1_ScBLP_like Typ 96.9 0.0012 2.7E-08 52.2 4.0 45 118-168 43-90 (114)
115 PRK04155 chaperone protein Hch 96.7 0.025 5.4E-07 51.9 12.0 49 117-170 145-195 (287)
116 cd03134 GATase1_PfpI_like A ty 96.7 0.0097 2.1E-07 49.3 8.6 78 89-171 17-110 (165)
117 cd03147 GATase1_Ydr533c_like T 96.7 0.0069 1.5E-07 53.8 8.0 50 117-171 92-143 (231)
118 cd03129 GAT1_Peptidase_E_like 96.7 0.0093 2E-07 51.9 8.6 96 59-171 28-130 (210)
119 cd03169 GATase1_PfpI_1 Type 1 96.6 0.0032 6.9E-08 53.3 5.1 48 119-171 76-124 (180)
120 cd03148 GATase1_EcHsp31_like T 96.6 0.0086 1.9E-07 53.2 8.0 49 118-171 95-145 (232)
121 COG1897 MetA Homoserine trans- 96.5 0.0091 2E-07 53.4 7.4 132 118-277 98-237 (307)
122 cd03132 GATase1_catalase Type 96.5 0.019 4.1E-07 46.5 8.7 94 62-171 3-111 (142)
123 cd03137 GATase1_AraC_1 AraC tr 96.4 0.016 3.6E-07 48.9 7.9 50 117-171 62-112 (187)
124 cd03140 GATase1_PfpI_3 Type 1 96.2 0.024 5.3E-07 47.4 8.0 49 118-171 59-107 (170)
125 PF01965 DJ-1_PfpI: DJ-1/PfpI 96.1 0.0041 8.9E-08 50.9 2.6 50 117-171 35-87 (147)
126 COG3442 Predicted glutamine am 95.9 0.01 2.2E-07 52.0 4.2 73 92-172 28-104 (250)
127 COG1492 CobQ Cobyric acid synt 95.9 0.015 3.3E-07 56.5 5.7 66 93-171 270-341 (486)
128 KOG1907 Phosphoribosylformylgl 95.7 0.16 3.4E-06 52.7 12.4 95 59-171 1057-1163(1320)
129 cd03135 GATase1_DJ-1 Type 1 gl 95.4 0.072 1.6E-06 43.7 7.6 79 88-171 15-109 (163)
130 PRK11574 oxidative-stress-resi 95.4 0.15 3.4E-06 43.5 9.9 94 60-169 2-113 (196)
131 COG0693 ThiJ Putative intracel 95.4 0.024 5.3E-07 48.1 4.9 95 61-171 3-115 (188)
132 PF03575 Peptidase_S51: Peptid 95.1 0.062 1.3E-06 44.4 6.3 73 88-167 3-81 (154)
133 cd03139 GATase1_PfpI_2 Type 1 95.1 0.061 1.3E-06 45.1 6.3 49 118-171 61-110 (183)
134 PRK11249 katE hydroperoxidase 95.0 0.14 2.9E-06 52.9 9.5 97 59-171 596-707 (752)
135 COG1797 CobB Cobyrinic acid a, 95.0 0.069 1.5E-06 51.4 6.8 88 61-172 246-340 (451)
136 cd03141 GATase1_Hsp31_like Typ 94.8 0.036 7.8E-07 48.7 4.2 49 118-171 89-139 (221)
137 cd03145 GAT1_cyanophycinase Ty 94.7 0.16 3.4E-06 44.6 7.9 96 59-171 28-133 (217)
138 TIGR02069 cyanophycinase cyano 94.6 0.14 3E-06 46.1 7.6 97 59-170 27-131 (250)
139 cd03136 GATase1_AraC_ArgR_like 94.0 0.12 2.7E-06 43.6 5.5 50 117-171 62-111 (185)
140 cd03138 GATase1_AraC_2 AraC tr 94.0 0.13 2.8E-06 43.8 5.7 50 117-171 67-120 (195)
141 TIGR01383 not_thiJ DJ-1 family 93.6 0.093 2E-06 43.9 4.1 50 117-171 61-112 (179)
142 PRK03372 ppnK inorganic polyph 92.5 0.56 1.2E-05 43.5 7.8 83 62-165 7-106 (306)
143 KOG2764 Putative transcription 92.3 0.6 1.3E-05 41.4 7.3 69 91-165 25-110 (247)
144 PRK09393 ftrA transcriptional 92.3 0.3 6.6E-06 45.1 5.9 50 117-171 73-122 (322)
145 PF13278 DUF4066: Putative ami 91.4 0.23 4.9E-06 41.1 3.7 50 117-171 59-109 (166)
146 PRK01911 ppnK inorganic polyph 90.7 1.3 2.8E-05 40.8 8.2 83 62-165 2-98 (292)
147 PRK03378 ppnK inorganic polyph 90.7 1.3 2.8E-05 40.8 8.2 84 61-165 6-97 (292)
148 COG3340 PepE Peptidase E [Amin 90.3 0.81 1.8E-05 40.2 6.1 78 83-166 48-129 (224)
149 PRK02649 ppnK inorganic polyph 90.2 1.2 2.7E-05 41.2 7.6 82 62-164 3-101 (305)
150 PRK04539 ppnK inorganic polyph 89.8 2.2 4.9E-05 39.3 9.0 83 62-165 7-102 (296)
151 PRK14077 pnk inorganic polypho 88.5 1.9 4.1E-05 39.6 7.5 82 62-165 12-98 (287)
152 PRK02155 ppnK NAD(+)/NADH kina 87.0 3.6 7.7E-05 37.8 8.4 84 61-165 6-97 (291)
153 PRK01231 ppnK inorganic polyph 85.8 3.3 7.2E-05 38.2 7.5 83 62-165 6-96 (295)
154 COG0303 MoeA Molybdopterin bio 85.3 6.2 0.00013 38.0 9.4 77 56-132 172-255 (404)
155 PRK01215 competence damage-ind 85.1 4.5 9.8E-05 36.6 8.0 68 58-130 1-73 (264)
156 PLN02935 Bifunctional NADH kin 84.8 3.8 8.3E-05 40.5 7.7 83 61-164 195-295 (508)
157 PF09825 BPL_N: Biotin-protein 83.3 3.4 7.3E-05 39.3 6.5 48 116-168 46-95 (367)
158 PF03358 FMN_red: NADPH-depend 83.0 3.8 8.1E-05 33.1 6.0 90 62-164 3-115 (152)
159 PRK09417 mogA molybdenum cofac 81.5 10 0.00022 32.7 8.3 70 59-133 2-80 (193)
160 PRK02231 ppnK inorganic polyph 81.1 5.3 0.00011 36.4 6.7 65 88-164 3-75 (272)
161 COG0655 WrbA Multimeric flavod 80.8 7.3 0.00016 33.6 7.3 76 61-149 2-100 (207)
162 TIGR02667 moaB_proteo molybden 79.8 11 0.00023 31.5 7.7 67 59-132 3-76 (163)
163 PF01513 NAD_kinase: ATP-NAD k 79.5 1.5 3.2E-05 40.0 2.6 83 62-165 1-110 (285)
164 COG4917 EutP Ethanolamine util 79.4 3.9 8.5E-05 33.2 4.6 40 56-105 87-126 (148)
165 PRK03708 ppnK inorganic polyph 79.3 6.8 0.00015 35.7 6.9 82 62-165 2-90 (277)
166 cd06292 PBP1_LacI_like_10 Liga 78.9 22 0.00047 31.0 9.9 71 83-161 14-89 (273)
167 TIGR00177 molyb_syn molybdenum 78.6 15 0.00033 29.8 8.1 44 89-132 31-79 (144)
168 PLN02727 NAD kinase 78.3 7 0.00015 41.4 7.3 83 61-165 679-777 (986)
169 PRK10680 molybdopterin biosynt 78.1 16 0.00036 35.2 9.4 78 56-133 173-257 (411)
170 PRK14690 molybdopterin biosynt 77.7 16 0.00035 35.3 9.3 79 54-132 187-272 (419)
171 PRK02645 ppnK inorganic polyph 76.6 10 0.00022 35.0 7.3 82 61-163 4-89 (305)
172 cd06281 PBP1_LacI_like_5 Ligan 76.2 26 0.00055 30.5 9.6 47 83-129 14-65 (269)
173 cd06295 PBP1_CelR Ligand bindi 76.1 32 0.0007 29.9 10.2 66 83-161 25-93 (275)
174 PF07085 DRTGG: DRTGG domain; 76.0 7.4 0.00016 29.7 5.3 54 99-164 41-94 (105)
175 PLN02929 NADH kinase 76.0 7.3 0.00016 36.1 6.1 60 88-164 37-96 (301)
176 PF05368 NmrA: NmrA-like famil 75.0 17 0.00036 31.4 7.9 61 88-150 34-94 (233)
177 PRK13017 dihydroxy-acid dehydr 74.9 22 0.00047 36.0 9.4 103 50-167 36-157 (596)
178 TIGR00110 ilvD dihydroxy-acid 74.8 25 0.00054 35.2 9.8 93 59-166 10-125 (535)
179 cd00886 MogA_MoaB MogA_MoaB fa 74.5 21 0.00046 29.2 8.0 43 90-132 25-74 (152)
180 cd00887 MoeA MoeA family. Memb 74.2 19 0.00041 34.4 8.7 77 56-132 164-247 (394)
181 PRK14076 pnk inorganic polypho 73.5 10 0.00022 38.2 6.9 85 60-165 289-382 (569)
182 PF02514 CobN-Mg_chel: CobN/Ma 73.2 13 0.00029 40.4 8.0 66 58-130 69-142 (1098)
183 PRK00911 dihydroxy-acid dehydr 73.1 23 0.0005 35.5 9.1 94 59-167 30-146 (552)
184 cd06274 PBP1_FruR Ligand bindi 72.1 33 0.00072 29.6 9.2 47 83-129 14-65 (264)
185 PRK14497 putative molybdopteri 72.0 19 0.00042 36.1 8.4 82 50-131 169-257 (546)
186 cd01545 PBP1_SalR Ligand-bindi 71.9 34 0.00074 29.5 9.2 67 83-161 14-86 (270)
187 PRK13016 dihydroxy-acid dehydr 71.1 25 0.00055 35.4 8.9 103 50-167 32-152 (577)
188 cd06267 PBP1_LacI_sugar_bindin 70.8 34 0.00074 29.0 8.9 66 83-161 14-84 (264)
189 cd00758 MoCF_BD MoCF_BD: molyb 70.6 21 0.00046 28.4 7.0 44 89-132 23-71 (133)
190 cd06305 PBP1_methylthioribose_ 70.4 37 0.0008 29.4 9.2 68 83-161 14-86 (273)
191 PRK06131 dihydroxy-acid dehydr 70.3 26 0.00056 35.3 8.7 101 50-165 28-146 (571)
192 cd01575 PBP1_GntR Ligand-bindi 70.0 39 0.00084 29.0 9.2 44 86-129 17-65 (268)
193 PRK10355 xylF D-xylose transpo 70.0 44 0.00094 30.8 9.9 85 59-162 24-113 (330)
194 PRK14491 putative bifunctional 69.7 25 0.00054 35.7 8.7 78 55-132 362-446 (597)
195 PRK10653 D-ribose transporter 69.7 48 0.001 29.5 9.9 63 58-128 24-91 (295)
196 PRK12448 dihydroxy-acid dehydr 69.6 36 0.00077 34.6 9.6 94 59-167 32-148 (615)
197 smart00852 MoCF_biosynth Proba 69.2 13 0.00028 29.6 5.4 42 90-131 23-69 (135)
198 cd01542 PBP1_TreR_like Ligand- 68.9 47 0.001 28.5 9.4 46 84-129 15-65 (259)
199 cd00885 cinA Competence-damage 68.8 22 0.00047 29.9 6.9 74 90-172 24-102 (170)
200 COG4242 CphB Cyanophycinase an 68.6 11 0.00023 34.1 5.1 96 60-170 52-155 (293)
201 cd06282 PBP1_GntR_like_2 Ligan 68.3 34 0.00073 29.4 8.4 66 86-163 17-87 (266)
202 cd06299 PBP1_LacI_like_13 Liga 67.8 44 0.00096 28.7 9.1 46 84-129 15-65 (265)
203 COG4090 Uncharacterized protei 67.7 9.9 0.00022 30.9 4.3 40 117-163 83-124 (154)
204 cd01537 PBP1_Repressors_Sugar_ 65.2 44 0.00096 28.2 8.4 48 83-130 14-66 (264)
205 COG3199 Predicted inorganic po 65.2 29 0.00062 32.8 7.4 37 119-168 100-136 (355)
206 PRK03501 ppnK inorganic polyph 65.2 25 0.00053 31.9 6.9 70 62-164 4-74 (264)
207 cd06284 PBP1_LacI_like_6 Ligan 65.1 53 0.0011 28.2 9.0 47 83-129 14-65 (267)
208 cd06273 PBP1_GntR_like_1 This 65.0 64 0.0014 27.8 9.6 65 84-161 15-84 (268)
209 PF10087 DUF2325: Uncharacteri 64.9 53 0.0012 24.6 7.8 74 88-170 13-91 (97)
210 cd03522 MoeA_like MoeA_like. T 64.8 31 0.00068 32.0 7.7 74 56-134 155-234 (312)
211 cd06318 PBP1_ABC_sugar_binding 64.8 48 0.001 28.9 8.8 46 83-128 14-64 (282)
212 PRK12493 magnesium chelatase s 64.2 22 0.00048 39.4 7.5 99 60-171 253-364 (1310)
213 PRK10569 NAD(P)H-dependent FMN 63.6 40 0.00086 28.8 7.7 89 61-164 2-108 (191)
214 cd06283 PBP1_RegR_EndR_KdgR_li 63.2 51 0.0011 28.3 8.5 47 83-129 14-65 (267)
215 cd06322 PBP1_ABC_sugar_binding 62.6 62 0.0013 27.9 9.0 68 83-161 14-86 (267)
216 PRK14498 putative molybdopteri 62.0 29 0.00062 35.3 7.5 77 56-132 182-265 (633)
217 TIGR00045 glycerate kinase. Th 62.0 12 0.00026 35.7 4.5 46 112-163 276-323 (375)
218 PF09822 ABC_transp_aux: ABC-t 61.9 50 0.0011 29.5 8.4 81 59-150 145-225 (271)
219 PRK04885 ppnK inorganic polyph 61.9 23 0.0005 32.1 6.1 67 63-165 3-71 (265)
220 PRK10342 glycerate kinase I; P 61.7 11 0.00023 36.1 4.1 47 112-164 277-325 (381)
221 PF13407 Peripla_BP_4: Peripla 61.4 57 0.0012 28.1 8.5 72 82-164 12-89 (257)
222 cd06324 PBP1_ABC_sugar_binding 61.3 81 0.0018 28.2 9.7 66 84-161 16-88 (305)
223 PRK10014 DNA-binding transcrip 61.1 78 0.0017 28.6 9.7 63 59-129 63-130 (342)
224 cd01538 PBP1_ABC_xylose_bindin 61.1 58 0.0012 28.8 8.7 68 83-161 14-86 (288)
225 cd06309 PBP1_YtfQ_like Peripla 61.1 57 0.0012 28.3 8.5 69 84-163 15-88 (273)
226 cd06300 PBP1_ABC_sugar_binding 60.3 86 0.0019 27.1 9.5 68 83-161 14-91 (272)
227 cd06298 PBP1_CcpA_like Ligand- 60.0 78 0.0017 27.1 9.2 46 83-128 14-64 (268)
228 COG4285 Uncharacterized conser 59.9 9.4 0.0002 33.7 3.1 47 117-175 47-97 (253)
229 cd01540 PBP1_arabinose_binding 59.5 70 0.0015 28.0 8.9 67 84-162 15-86 (289)
230 cd06302 PBP1_LsrB_Quorum_Sensi 59.1 70 0.0015 28.5 8.9 46 83-128 14-65 (298)
231 cd06310 PBP1_ABC_sugar_binding 58.8 74 0.0016 27.5 8.8 68 83-161 14-88 (273)
232 cd01541 PBP1_AraR Ligand-bindi 58.2 92 0.002 27.0 9.3 47 83-129 14-65 (273)
233 PRK11303 DNA-binding transcrip 58.0 1.1E+02 0.0025 27.3 10.2 63 59-129 60-127 (328)
234 PRK09932 glycerate kinase II; 57.4 14 0.00031 35.3 4.1 47 112-164 277-325 (381)
235 COG2185 Sbm Methylmalonyl-CoA 57.4 65 0.0014 26.5 7.4 56 92-150 34-91 (143)
236 cd06289 PBP1_MalI_like Ligand- 57.0 94 0.002 26.6 9.1 46 83-128 14-64 (268)
237 cd06301 PBP1_rhizopine_binding 56.7 86 0.0019 27.1 8.9 68 83-161 14-87 (272)
238 PF03698 UPF0180: Uncharacteri 56.2 22 0.00048 26.3 4.1 35 89-130 12-46 (80)
239 cd06288 PBP1_sucrose_transcrip 55.7 99 0.0021 26.5 9.1 46 83-128 15-65 (269)
240 COG2984 ABC-type uncharacteriz 55.5 1.1E+02 0.0023 28.7 9.3 88 59-164 158-248 (322)
241 COG1609 PurR Transcriptional r 54.9 1.2E+02 0.0026 28.1 9.9 61 59-127 57-122 (333)
242 PRK01185 ppnK inorganic polyph 54.9 50 0.0011 30.1 7.1 75 63-164 3-82 (271)
243 cd06321 PBP1_ABC_sugar_binding 54.9 80 0.0017 27.3 8.4 69 83-162 14-89 (271)
244 cd06279 PBP1_LacI_like_3 Ligan 54.5 1.1E+02 0.0024 26.8 9.3 46 84-129 20-66 (283)
245 cd06317 PBP1_ABC_sugar_binding 54.4 83 0.0018 27.1 8.4 67 84-161 16-87 (275)
246 PLN03069 magnesiumprotoporphyr 53.7 45 0.00098 36.8 7.6 101 59-172 265-377 (1220)
247 TIGR01196 edd 6-phosphoglucona 53.6 1.3E+02 0.0028 30.7 10.2 94 57-165 61-179 (601)
248 COG0521 MoaB Molybdopterin bio 53.6 34 0.00075 28.9 5.4 44 88-133 30-81 (169)
249 cd01536 PBP1_ABC_sugar_binding 53.0 1.1E+02 0.0025 25.9 8.9 47 83-129 14-65 (267)
250 PRK10936 TMAO reductase system 52.8 1.9E+02 0.004 26.6 11.2 62 59-128 45-113 (343)
251 cd06311 PBP1_ABC_sugar_binding 52.7 1.2E+02 0.0025 26.4 9.1 67 84-161 15-91 (274)
252 cd06291 PBP1_Qymf_like Ligand 52.5 99 0.0021 26.5 8.6 46 83-128 14-64 (265)
253 cd06296 PBP1_CatR_like Ligand- 51.9 1.1E+02 0.0025 26.2 8.8 67 83-162 14-85 (270)
254 cd01574 PBP1_LacI Ligand-bindi 51.8 1.4E+02 0.003 25.6 9.3 47 83-129 14-66 (264)
255 cd06323 PBP1_ribose_binding Pe 51.8 97 0.0021 26.5 8.3 68 83-161 14-86 (268)
256 cd06297 PBP1_LacI_like_12 Liga 51.7 1.2E+02 0.0027 26.2 9.1 47 83-129 14-65 (269)
257 TIGR02634 xylF D-xylose ABC tr 51.3 1.2E+02 0.0027 27.1 9.2 63 88-161 18-85 (302)
258 cd06312 PBP1_ABC_sugar_binding 51.1 1.3E+02 0.0029 26.0 9.2 70 83-163 15-90 (271)
259 cd06316 PBP1_ABC_sugar_binding 50.9 1.3E+02 0.0029 26.4 9.3 68 83-161 14-87 (294)
260 PRK10703 DNA-binding transcrip 50.5 1.9E+02 0.0042 26.0 10.6 63 59-129 58-125 (341)
261 cd06271 PBP1_AglR_RafR_like Li 50.4 1.6E+02 0.0035 25.1 9.6 46 84-129 19-69 (268)
262 PRK06015 keto-hydroxyglutarate 50.3 70 0.0015 27.8 7.0 93 58-168 2-110 (201)
263 COG0061 nadF NAD kinase [Coenz 50.3 56 0.0012 29.7 6.7 80 62-164 2-88 (281)
264 PRK14075 pnk inorganic polypho 50.1 55 0.0012 29.4 6.6 59 86-165 14-72 (256)
265 PRK03094 hypothetical protein; 50.1 33 0.00072 25.4 4.2 34 89-129 12-45 (80)
266 COG4977 Transcriptional regula 50.0 37 0.0008 31.8 5.5 49 118-171 75-124 (328)
267 TIGR02417 fruct_sucro_rep D-fr 49.5 1.5E+02 0.0033 26.6 9.6 61 60-128 60-125 (327)
268 COG0129 IlvD Dihydroxyacid deh 49.5 1.4E+02 0.0029 30.3 9.6 71 57-131 39-132 (575)
269 cd06320 PBP1_allose_binding Pe 49.0 1.4E+02 0.003 25.8 8.9 68 84-162 15-89 (275)
270 PRK06852 aldolase; Validated 48.7 1.4E+02 0.003 27.7 9.1 68 59-131 167-241 (304)
271 PRK03767 NAD(P)H:quinone oxido 48.4 92 0.002 26.5 7.5 45 82-126 14-76 (200)
272 PRK08883 ribulose-phosphate 3- 48.4 1.1E+02 0.0024 26.7 8.1 40 88-127 96-136 (220)
273 cd06308 PBP1_sensor_kinase_lik 48.3 1.2E+02 0.0026 26.2 8.5 67 86-163 17-89 (270)
274 PF04230 PS_pyruv_trans: Polys 48.1 1.1E+02 0.0024 26.0 8.1 26 83-108 4-29 (286)
275 PF10662 PduV-EutP: Ethanolami 48.1 28 0.00061 28.6 4.0 36 58-102 88-123 (143)
276 TIGR00288 conserved hypothetic 48.0 1.1E+02 0.0024 25.7 7.5 63 88-162 69-136 (160)
277 PF06792 UPF0261: Uncharacteri 47.8 1.1E+02 0.0024 29.5 8.5 101 58-183 183-296 (403)
278 PRK09722 allulose-6-phosphate 47.5 97 0.0021 27.5 7.6 40 88-127 98-138 (229)
279 PRK09054 phosphogluconate dehy 47.3 1.4E+02 0.003 30.4 9.3 70 58-131 63-156 (603)
280 cd06315 PBP1_ABC_sugar_binding 47.3 2E+02 0.0043 25.2 10.0 67 86-163 18-89 (280)
281 cd06319 PBP1_ABC_sugar_binding 47.2 1.8E+02 0.0039 25.0 9.4 68 83-161 14-86 (277)
282 PF00920 ILVD_EDD: Dehydratase 47.1 15 0.00032 36.6 2.6 99 60-173 1-122 (521)
283 cd05014 SIS_Kpsf KpsF-like pro 46.9 82 0.0018 24.2 6.5 73 83-164 10-83 (128)
284 cd06306 PBP1_TorT-like TorT-li 46.8 1.7E+02 0.0036 25.4 9.1 66 84-161 15-87 (268)
285 TIGR01753 flav_short flavodoxi 46.8 1.3E+02 0.0028 23.3 7.7 43 82-127 11-53 (140)
286 PRK09739 hypothetical protein; 46.6 1.2E+02 0.0027 25.6 8.0 74 61-147 5-106 (199)
287 cd06277 PBP1_LacI_like_1 Ligan 46.1 1.4E+02 0.0031 25.6 8.6 46 83-128 17-67 (268)
288 PLN02699 Bifunctional molybdop 46.1 1E+02 0.0022 31.8 8.4 78 54-131 175-261 (659)
289 TIGR03567 FMN_reduc_SsuE FMN r 45.5 1.4E+02 0.0031 24.6 8.1 57 62-126 2-72 (171)
290 PF00532 Peripla_BP_1: Peripla 45.1 1.5E+02 0.0033 26.4 8.8 59 61-128 2-65 (279)
291 cd06272 PBP1_hexuronate_repres 45.0 1.8E+02 0.0038 24.9 8.9 44 84-128 15-60 (261)
292 TIGR03566 FMN_reduc_MsuE FMN r 44.8 1.4E+02 0.003 24.7 7.9 57 62-126 2-75 (174)
293 cd06293 PBP1_LacI_like_11 Liga 44.7 2E+02 0.0044 24.7 9.9 46 83-128 14-64 (269)
294 PRK08745 ribulose-phosphate 3- 44.4 1.3E+02 0.0028 26.5 7.9 39 88-126 100-139 (223)
295 cd06285 PBP1_LacI_like_7 Ligan 44.1 2.1E+02 0.0045 24.6 9.6 43 86-128 17-64 (265)
296 TIGR01481 ccpA catabolite cont 44.1 2.3E+02 0.0051 25.3 9.9 61 60-128 59-124 (329)
297 COG0800 Eda 2-keto-3-deoxy-6-p 44.1 64 0.0014 28.3 5.7 86 57-160 10-111 (211)
298 PRK03604 moaC bifunctional mol 44.0 1.4E+02 0.003 27.8 8.3 67 62-133 157-229 (312)
299 PRK05569 flavodoxin; Provision 43.9 1.5E+02 0.0033 23.2 7.7 43 82-127 14-56 (141)
300 TIGR00147 lipid kinase, YegS/R 43.1 2.5E+02 0.0053 25.2 9.8 62 62-130 3-68 (293)
301 PF00834 Ribul_P_3_epim: Ribul 43.0 91 0.002 27.0 6.6 40 88-127 95-135 (201)
302 PRK13405 bchH magnesium chelat 43.0 85 0.0018 34.7 7.6 100 59-171 245-354 (1209)
303 PRK04761 ppnK inorganic polyph 42.7 29 0.00063 31.2 3.5 36 118-165 24-59 (246)
304 cd06278 PBP1_LacI_like_2 Ligan 42.6 2.1E+02 0.0046 24.3 9.4 42 87-128 18-63 (266)
305 cd06270 PBP1_GalS_like Ligand 42.0 2.2E+02 0.0048 24.4 9.1 45 84-128 15-64 (268)
306 TIGR02826 RNR_activ_nrdG3 anae 42.0 51 0.0011 27.0 4.7 27 120-150 62-88 (147)
307 PRK03620 5-dehydro-4-deoxygluc 41.9 74 0.0016 29.1 6.2 43 119-163 41-85 (303)
308 KOG3974 Predicted sugar kinase 41.3 39 0.00084 30.8 4.0 53 110-167 92-144 (306)
309 cd01539 PBP1_GGBP Periplasmic 40.6 2.3E+02 0.0049 25.3 9.2 67 84-161 15-88 (303)
310 cd06280 PBP1_LacI_like_4 Ligan 40.5 1E+02 0.0023 26.5 6.8 43 86-128 17-64 (263)
311 PRK14987 gluconate operon tran 40.2 2.8E+02 0.006 24.9 10.0 60 60-127 63-127 (331)
312 cd06275 PBP1_PurR Ligand-bindi 40.0 2.4E+02 0.0052 24.1 9.3 46 84-129 15-65 (269)
313 PRK00561 ppnK inorganic polyph 39.6 34 0.00075 30.9 3.5 36 118-165 32-67 (259)
314 PRK06851 hypothetical protein; 39.6 97 0.0021 29.5 6.7 51 60-127 214-264 (367)
315 TIGR02025 BchH magnesium chela 39.5 75 0.0016 35.1 6.6 101 59-172 238-350 (1216)
316 PRK06756 flavodoxin; Provision 39.4 2E+02 0.0042 22.9 8.6 44 82-127 14-57 (148)
317 TIGR00200 cinA_nterm competenc 38.9 1.5E+02 0.0033 28.6 8.0 41 90-130 25-70 (413)
318 cd06313 PBP1_ABC_sugar_binding 38.6 1.9E+02 0.0041 25.2 8.2 46 83-128 14-64 (272)
319 PF02595 Gly_kinase: Glycerate 38.1 14 0.00031 35.3 0.8 45 113-163 278-324 (377)
320 PF00994 MoCF_biosynth: Probab 37.5 70 0.0015 25.6 4.8 43 90-132 22-69 (144)
321 PRK00170 azoreductase; Reviewe 37.2 1.5E+02 0.0033 24.8 7.1 39 61-106 3-43 (201)
322 TIGR02990 ectoine_eutA ectoine 37.1 1.9E+02 0.0041 25.7 7.9 58 60-130 120-192 (239)
323 PLN02699 Bifunctional molybdop 37.0 2.5E+02 0.0055 28.9 9.7 75 57-132 455-537 (659)
324 PLN02493 probable peroxisomal 37.0 2.2E+02 0.0047 27.2 8.6 85 89-175 214-303 (367)
325 PRK15408 autoinducer 2-binding 37.0 2.8E+02 0.006 25.7 9.3 82 61-161 24-111 (336)
326 cd06294 PBP1_ycjW_transcriptio 36.8 2.7E+02 0.0058 23.8 9.9 45 84-128 20-69 (270)
327 PRK09271 flavodoxin; Provision 36.6 2.3E+02 0.0051 23.0 8.6 46 82-127 13-59 (160)
328 PRK00549 competence damage-ind 36.3 1.6E+02 0.0035 28.4 7.8 41 90-130 25-70 (414)
329 TIGR03521 GldG gliding-associa 36.2 1.2E+02 0.0026 30.4 7.2 78 59-150 182-262 (552)
330 cd06314 PBP1_tmGBP Periplasmic 36.1 2.5E+02 0.0053 24.2 8.5 45 84-128 14-64 (271)
331 cd01422 MGS Methylglyoxal synt 36.1 2E+02 0.0042 22.4 7.0 66 89-160 35-106 (115)
332 KOG2585 Uncharacterized conser 36.1 1.9E+02 0.0042 28.2 8.1 64 56-130 262-327 (453)
333 TIGR01839 PHA_synth_II poly(R) 35.7 2E+02 0.0044 29.1 8.5 68 88-170 237-304 (560)
334 PRK08005 epimerase; Validated 35.4 1.4E+02 0.003 26.1 6.6 40 88-127 96-136 (210)
335 PF06283 ThuA: Trehalose utili 34.4 1.4E+02 0.0031 25.5 6.6 68 88-165 22-91 (217)
336 cd06287 PBP1_LacI_like_8 Ligan 34.3 2.9E+02 0.0063 24.1 8.7 45 83-129 22-66 (269)
337 PLN03241 magnesium chelatase s 34.3 1.8E+02 0.004 32.6 8.5 40 59-106 315-354 (1353)
338 PRK09701 D-allose transporter 33.9 3E+02 0.0066 24.6 8.9 82 61-161 25-113 (311)
339 PRK11914 diacylglycerol kinase 33.3 3.7E+02 0.008 24.3 9.6 61 62-130 10-75 (306)
340 TIGR02405 trehalos_R_Ecol treh 33.1 1.9E+02 0.0041 25.8 7.4 62 60-129 59-125 (311)
341 PRK09189 uroporphyrinogen-III 32.9 97 0.0021 27.0 5.3 79 88-175 13-95 (240)
342 TIGR01319 glmL_fam conserved h 32.6 96 0.0021 30.5 5.5 44 87-130 86-131 (463)
343 TIGR02690 resist_ArsH arsenica 32.4 2.5E+02 0.0053 24.7 7.7 61 86-147 45-117 (219)
344 TIGR02637 RhaS rhamnose ABC tr 32.4 3E+02 0.0064 24.3 8.5 68 83-161 13-87 (302)
345 cd01544 PBP1_GalR Ligand-bindi 32.2 3.3E+02 0.0072 23.5 9.5 59 63-127 2-60 (270)
346 COG1167 ARO8 Transcriptional r 31.9 1.9E+02 0.0042 28.1 7.6 62 89-150 191-260 (459)
347 PF00389 2-Hacid_dh: D-isomer 31.8 90 0.0019 24.5 4.5 40 88-129 9-48 (133)
348 PRK10423 transcriptional repre 31.5 2.5E+02 0.0055 25.0 8.0 62 60-129 56-122 (327)
349 PF00365 PFK: Phosphofructokin 31.4 77 0.0017 28.9 4.5 42 122-170 4-45 (282)
350 PRK08811 uroporphyrinogen-III 31.2 78 0.0017 28.5 4.5 79 88-176 31-116 (266)
351 PRK14057 epimerase; Provisiona 31.1 2.3E+02 0.0049 25.6 7.3 39 88-126 113-161 (254)
352 PRK03670 competence damage-ind 31.1 1.8E+02 0.004 26.1 6.8 41 90-130 25-71 (252)
353 COG1929 Glycerate kinase [Carb 30.6 62 0.0013 30.8 3.7 46 112-163 277-324 (378)
354 TIGR01182 eda Entner-Doudoroff 30.4 1.5E+02 0.0033 25.7 6.0 92 58-167 6-113 (204)
355 PRK03673 hypothetical protein; 30.2 2.5E+02 0.0054 27.0 7.9 39 92-130 28-71 (396)
356 TIGR02482 PFKA_ATP 6-phosphofr 30.0 79 0.0017 29.2 4.3 41 122-169 3-43 (301)
357 PRK07667 uridine kinase; Provi 29.8 1.4E+02 0.003 25.2 5.6 40 58-107 15-54 (193)
358 PRK08091 ribulose-phosphate 3- 29.5 2.7E+02 0.0059 24.7 7.5 39 88-126 106-147 (228)
359 PRK08211 putative dehydratase; 29.5 4.2E+02 0.0091 27.4 9.5 73 59-131 60-164 (655)
360 PLN02979 glycolate oxidase 29.3 3.9E+02 0.0084 25.6 8.9 84 89-175 213-302 (366)
361 PRK09492 treR trehalose repres 29.2 2.6E+02 0.0055 24.8 7.6 60 61-128 63-127 (315)
362 PRK05718 keto-hydroxyglutarate 28.7 1.5E+02 0.0032 25.9 5.6 100 58-175 13-130 (212)
363 PRK06851 hypothetical protein; 28.7 1.7E+02 0.0037 27.9 6.4 51 60-127 30-80 (367)
364 COG1570 XseA Exonuclease VII, 28.4 2.6E+02 0.0055 27.4 7.6 81 62-160 137-230 (440)
365 COG1587 HemD Uroporphyrinogen- 28.3 1E+02 0.0022 27.2 4.7 84 88-179 14-103 (248)
366 cd06286 PBP1_CcpB_like Ligand- 28.2 2E+02 0.0043 24.5 6.5 46 83-128 14-64 (260)
367 PLN02417 dihydrodipicolinate s 28.2 1.8E+02 0.0039 26.2 6.4 45 119-165 35-80 (280)
368 PF13941 MutL: MutL protein 27.9 2.4E+02 0.0052 27.8 7.4 44 87-130 90-135 (457)
369 cd06290 PBP1_LacI_like_9 Ligan 27.9 2.3E+02 0.0049 24.2 6.8 47 83-129 14-65 (265)
370 PF01081 Aldolase: KDPG and KH 27.9 1.5E+02 0.0032 25.6 5.4 91 60-168 8-115 (196)
371 PF13380 CoA_binding_2: CoA bi 27.6 86 0.0019 24.4 3.6 21 88-108 17-37 (116)
372 PRK08227 autoinducer 2 aldolas 27.6 3.7E+02 0.008 24.4 8.1 79 59-150 140-219 (264)
373 TIGR00640 acid_CoA_mut_C methy 27.5 3.2E+02 0.007 21.8 7.2 61 87-150 18-81 (132)
374 TIGR01140 L_thr_O3P_dcar L-thr 27.4 2.6E+02 0.0056 25.4 7.4 36 89-127 98-133 (330)
375 PRK13238 tnaA tryptophanase/L- 27.4 2.2E+02 0.0047 27.8 7.1 66 89-162 128-218 (460)
376 KOG4180 Predicted kinase [Gene 27.2 67 0.0015 30.2 3.3 56 90-161 80-135 (395)
377 PF04392 ABC_sub_bind: ABC tra 27.1 1.4E+02 0.003 26.9 5.4 68 88-164 150-220 (294)
378 cd06303 PBP1_LuxPQ_Quorum_Sens 27.1 3.9E+02 0.0085 23.2 8.3 45 84-128 16-69 (280)
379 COG1597 LCB5 Sphingosine kinas 27.1 2.3E+02 0.0049 26.0 6.9 44 87-130 22-69 (301)
380 PLN02765 pyruvate kinase 26.8 82 0.0018 31.5 4.1 81 81-170 219-317 (526)
381 COG0036 Rpe Pentose-5-phosphat 26.8 2.1E+02 0.0045 25.3 6.2 39 88-126 99-138 (220)
382 COG4126 Hydantoin racemase [Am 26.8 82 0.0018 27.9 3.6 46 118-178 68-114 (230)
383 PF04016 DUF364: Domain of unk 26.7 61 0.0013 26.5 2.7 54 90-147 23-86 (147)
384 COG3155 ElbB Uncharacterized p 26.7 1.7E+02 0.0038 24.8 5.4 53 118-175 84-148 (217)
385 PF09897 DUF2124: Uncharacteri 26.6 38 0.00083 28.0 1.5 37 120-163 81-119 (147)
386 TIGR03249 KdgD 5-dehydro-4-deo 26.6 2.1E+02 0.0045 26.0 6.5 41 119-161 39-80 (296)
387 TIGR03609 S_layer_CsaB polysac 25.9 1.8E+02 0.0038 26.1 5.9 77 83-165 14-109 (298)
388 CHL00200 trpA tryptophan synth 25.6 3.7E+02 0.0081 24.2 7.8 67 89-159 135-206 (263)
389 PRK12440 acetate kinase; Revie 25.3 60 0.0013 31.3 2.7 15 116-130 317-331 (397)
390 cd00951 KDGDH 5-dehydro-4-deox 25.2 2.3E+02 0.0051 25.6 6.6 43 119-163 34-78 (289)
391 PRK12379 propionate/acetate ki 25.1 57 0.0012 31.5 2.5 16 116-131 314-329 (396)
392 cd02067 B12-binding B12 bindin 25.1 3.1E+02 0.0067 20.8 7.9 55 92-149 21-77 (119)
393 TIGR01755 flav_wrbA NAD(P)H:qu 25.0 3.7E+02 0.008 22.8 7.4 45 83-127 14-76 (197)
394 TIGR02313 HpaI-NOT-DapA 2,4-di 24.9 2.2E+02 0.0048 25.9 6.3 42 119-162 34-77 (294)
395 PRK15395 methyl-galactoside AB 24.9 5.3E+02 0.011 23.4 9.5 85 60-163 24-114 (330)
396 PRK14192 bifunctional 5,10-met 24.6 2.1E+02 0.0046 26.1 6.1 59 59-126 32-98 (283)
397 cd06578 HemD Uroporphyrinogen- 24.5 1.2E+02 0.0026 25.6 4.3 43 88-130 11-60 (239)
398 TIGR00262 trpA tryptophan synt 24.5 3.2E+02 0.0069 24.5 7.2 38 88-125 130-168 (256)
399 KOG2371 Molybdopterin biosynth 24.2 1.7E+02 0.0037 28.0 5.4 79 57-135 186-270 (411)
400 TIGR01754 flav_RNR ribonucleot 24.2 2.8E+02 0.0062 21.8 6.2 46 82-128 13-59 (140)
401 PF02110 HK: Hydroxyethylthiaz 24.0 5.3E+02 0.011 23.1 8.8 77 59-159 7-83 (246)
402 cd03142 GATase1_ThuA Type 1 gl 23.8 4E+02 0.0087 23.3 7.5 74 84-165 22-98 (215)
403 cd06167 LabA_like LabA_like pr 23.8 3.6E+02 0.0079 21.2 7.7 66 87-164 54-132 (149)
404 PRK04147 N-acetylneuraminate l 23.7 2.6E+02 0.0056 25.3 6.5 40 119-160 38-78 (293)
405 PF09075 STb_secrete: Heat-sta 23.7 17 0.00038 23.1 -0.8 16 156-171 30-45 (48)
406 PRK15453 phosphoribulokinase; 23.5 1.8E+02 0.004 26.8 5.4 40 58-107 3-42 (290)
407 cd01391 Periplasmic_Binding_Pr 23.4 4.2E+02 0.009 21.7 8.3 66 87-164 19-91 (269)
408 COG1834 N-Dimethylarginine dim 23.3 79 0.0017 28.8 3.0 69 88-164 41-114 (267)
409 COG0205 PfkA 6-phosphofructoki 23.2 1.3E+02 0.0029 28.4 4.5 41 122-169 6-46 (347)
410 COG2247 LytB Putative cell wal 23.2 4E+02 0.0086 25.1 7.5 45 92-136 46-93 (337)
411 PRK05752 uroporphyrinogen-III 23.2 1.1E+02 0.0023 27.1 3.9 80 88-175 16-103 (255)
412 COG1058 CinA Predicted nucleot 23.2 3.3E+02 0.0071 24.6 6.9 46 81-130 21-71 (255)
413 TIGR00732 dprA DNA protecting 23.1 5.1E+02 0.011 22.6 9.2 84 59-161 97-187 (220)
414 TIGR03531 selenium_SpcS O-phos 22.9 3.5E+02 0.0075 26.5 7.5 67 88-160 162-240 (444)
415 TIGR03432 yjhG_yagF probable d 22.9 7.9E+02 0.017 25.4 10.1 73 59-131 54-158 (640)
416 COG1703 ArgK Putative periplas 22.9 2.1E+02 0.0045 26.8 5.6 40 59-108 50-89 (323)
417 cd00763 Bacterial_PFK Phosphof 22.8 1.3E+02 0.0028 28.1 4.3 41 122-169 4-44 (317)
418 TIGR00237 xseA exodeoxyribonuc 22.7 1.9E+02 0.0041 28.1 5.7 86 62-166 131-229 (432)
419 PF00400 WD40: WD domain, G-be 22.7 1.5E+02 0.0032 17.2 3.4 20 258-277 3-22 (39)
420 cd05008 SIS_GlmS_GlmD_1 SIS (S 22.7 3.4E+02 0.0075 20.5 6.4 72 83-164 9-82 (126)
421 PRK11104 hemG protoporphyrinog 22.6 3.2E+02 0.007 22.7 6.5 75 83-165 14-88 (177)
422 PRK00726 murG undecaprenyldiph 22.6 2.2E+02 0.0047 26.0 5.9 36 113-164 246-281 (357)
423 COG0431 Predicted flavoprotein 22.5 4.6E+02 0.01 21.9 7.7 49 113-164 61-109 (184)
424 TIGR03436 acidobact_VWFA VWFA- 22.5 2E+02 0.0043 25.8 5.6 36 122-164 168-203 (296)
425 cd01543 PBP1_XylR Ligand-bindi 22.5 4.9E+02 0.011 22.2 8.0 44 83-127 13-58 (265)
426 cd00532 MGS-like MGS-like doma 22.3 3.5E+02 0.0075 20.6 6.2 67 90-161 34-105 (112)
427 cd02071 MM_CoA_mut_B12_BD meth 22.0 3.8E+02 0.0082 20.7 6.9 55 92-149 21-77 (122)
428 PRK07324 transaminase; Validat 21.8 4.7E+02 0.01 24.3 8.1 62 89-150 116-186 (373)
429 cd00363 PFK Phosphofructokinas 21.8 1.4E+02 0.0031 28.0 4.5 41 122-169 4-44 (338)
430 PRK10017 colanic acid biosynth 21.7 7.4E+02 0.016 24.0 9.5 38 62-106 2-41 (426)
431 PF02602 HEM4: Uroporphyrinoge 21.6 99 0.0021 26.4 3.2 42 89-130 2-53 (231)
432 PRK11041 DNA-binding transcrip 21.5 4.1E+02 0.0089 23.3 7.4 61 60-128 35-100 (309)
433 PLN02884 6-phosphofructokinase 21.5 2.8E+02 0.0061 26.8 6.5 62 92-169 36-98 (411)
434 PF14336 DUF4392: Domain of un 21.3 2.9E+02 0.0063 25.3 6.4 47 119-170 131-190 (291)
435 PF01070 FMN_dh: FMN-dependent 21.3 3.3E+02 0.0072 25.7 6.9 81 89-175 215-304 (356)
436 PRK05989 cobN cobaltochelatase 21.2 4.2E+02 0.0092 29.6 8.5 93 61-171 202-303 (1244)
437 KOG1273 WD40 repeat protein [G 21.2 47 0.001 31.2 1.1 13 266-278 106-118 (405)
438 PLN02828 formyltetrahydrofolat 21.2 4E+02 0.0086 24.2 7.1 38 90-127 115-155 (268)
439 PF02662 FlpD: Methyl-viologen 21.2 4.2E+02 0.0091 20.9 6.9 34 97-130 27-63 (124)
440 PF14403 CP_ATPgrasp_2: Circul 21.1 1.6E+02 0.0036 28.8 4.9 86 57-165 182-278 (445)
441 PRK06696 uridine kinase; Valid 21.0 2.1E+02 0.0047 24.6 5.2 39 59-107 21-59 (223)
442 PRK01372 ddl D-alanine--D-alan 20.9 5.9E+02 0.013 22.7 8.3 40 86-126 24-63 (304)
443 cd04724 Tryptophan_synthase_al 20.8 5.2E+02 0.011 22.7 7.8 37 89-125 120-158 (242)
444 PTZ00445 p36-lilke protein; Pr 20.8 3E+02 0.0064 24.4 5.9 67 86-168 30-104 (219)
445 PRK07157 acetate kinase; Provi 20.8 94 0.002 30.0 3.1 15 116-130 316-331 (400)
446 PRK09250 fructose-bisphosphate 20.8 2.1E+02 0.0046 27.1 5.3 41 91-131 223-292 (348)
447 PRK07114 keto-hydroxyglutarate 20.7 4.5E+02 0.0097 23.2 7.2 93 58-168 13-126 (222)
448 cd05569 PTS_IIB_fructose PTS_I 20.7 3.6E+02 0.0078 20.1 5.8 51 81-131 11-65 (96)
449 PRK10401 DNA-binding transcrip 20.6 4.3E+02 0.0093 23.8 7.5 61 60-128 59-124 (346)
450 PRK07058 acetate kinase; Provi 20.4 91 0.002 30.1 2.9 15 116-130 315-329 (396)
451 PRK06348 aspartate aminotransf 20.4 4.4E+02 0.0095 24.5 7.6 60 89-150 125-195 (384)
452 cd08162 MPP_PhoA_N Synechococc 20.3 3.6E+02 0.0077 24.9 6.8 42 87-130 196-241 (313)
453 PRK00180 acetate kinase A/prop 20.3 89 0.0019 30.2 2.8 40 116-167 319-359 (402)
454 PRK14489 putative bifunctional 20.1 5.1E+02 0.011 24.3 8.0 62 58-129 203-272 (366)
455 PF08937 DUF1863: MTH538 TIR-l 20.1 1.3E+02 0.0029 23.6 3.4 46 113-165 64-109 (130)
456 PF00710 Asparaginase: Asparag 20.0 2.6E+02 0.0057 25.7 5.8 58 99-164 202-262 (313)
No 1
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=100.00 E-value=4.4e-65 Score=439.66 Aligned_cols=270 Identities=61% Similarity=1.077 Sum_probs=251.3
Q ss_pred CCccchHHHHHHhhccchhhhhhcccccchhhhhccccccccccccCCCCCCCCCCCCCCcEEEEeCCCCCCCCCCCCCC
Q 023716 1 MWGYLWIPILFSLSKEFSSVEAQSKILLPSQRQRQQNDAVSSLSVLVPRCPVPDSKLNYRPVIGIVTHPGDGASGRLNNA 80 (278)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rPvIGIl~~~~~~~~~~~~~~ 80 (278)
||++++++.|.++.....+......|+||+|.+.+.| +++.|++|||++++||||||+++|+++..+++.++
T Consensus 1 m~~~~~~~~l~~~~~S~~~~~~~~~ilLps~~g~e~S--------RspvcsapdpnlnykPvIGIL~hpg~g~~~rl~n~ 72 (340)
T KOG1559|consen 1 MWRFLFFLSLLFFMASPGALLCAESILLPSQAGFELS--------RSPVCSAPDPNLNYKPVIGILSHPGDGASGRLKNA 72 (340)
T ss_pred CcchHHHHHHHHhccChHHHHHHhheecccccccccc--------cCccccCCCCCcccCceeEEeccCCCCccceeccc
Confidence 8886666655544344447777899999999998766 68899999999999999999999999999999998
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEE
Q 023716 81 TNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYA 160 (278)
Q Consensus 81 ~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLG 160 (278)
+.++||++||||++|++|||++|+.++++++.+..+++.+||||+|||+.....|++..+.+++++++++|+|+||||+|
T Consensus 73 t~~~yIAASYVK~aEsgGARViPli~nepEe~lfqklelvNGviftGGwak~~dY~~vvkkifnk~le~nDaGehFPvyg 152 (340)
T KOG1559|consen 73 TGRSYIAASYVKLAESGGARVIPLIYNEPEEILFQKLELVNGVIFTGGWAKRGDYFEVVKKIFNKVLERNDAGEHFPVYG 152 (340)
T ss_pred cCcchhHHHHHHHHHcCCceEEEEecCCcHHHHHHHHHHhceeEecCcccccccHHHHHHHHHHHHHhccCCccccchhh
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred EechHHHHHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccC
Q 023716 161 HCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDL 240 (278)
Q Consensus 161 IClG~QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L 240 (278)
||+||++|.++.+...++++.++..+.+.+++|+.++.+.+++||++|+++++.|..+++++++|.|+|+|++|+.+..|
T Consensus 153 ~CLGFE~lsmiISqnrdile~~d~vd~AssLqF~~nvn~~~t~FQrFPpELLkkL~~dcLvmq~Hk~gisp~nF~~N~~L 232 (340)
T KOG1559|consen 153 ICLGFELLSMIISQNRDILERFDAVDVASSLQFVGNVNIHGTMFQRFPPELLKKLSTDCLVMQNHKFGISPKNFQGNPAL 232 (340)
T ss_pred hhhhHHHHHHHHhcChhHHHhhcccccccceeeecccceeehhHhhCCHHHHHHhccchheeeccccccchhhccCCHHH
Confidence 99999999999986667899999999999999998887789999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 241 SRFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 241 ~~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
.++|+|++++.|.++++||+++|+++||++|+||||||
T Consensus 233 s~FFnilTT~~D~~~k~fvSTv~~~kYPvtgfQWHPEK 270 (340)
T KOG1559|consen 233 SSFFNILTTCTDGNSKTFVSTVESKKYPVTGFQWHPEK 270 (340)
T ss_pred HHHHhheeeecCCCceEEEEeecceeccceeeeecCcc
Confidence 99999999999988899999999999999999999997
No 2
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=100.00 E-value=1.9e-43 Score=319.95 Aligned_cols=212 Identities=49% Similarity=0.822 Sum_probs=184.5
Q ss_pred EEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCC-CC-ccchHHHH
Q 023716 63 IGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWA-KD-GLYYAIVE 140 (278)
Q Consensus 63 IGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~-~~-p~~~~~~~ 140 (278)
|||+++|.+... ..+...+||+++|+++++++|+++++|+++.++++++++++.+||||+|||+. ++ ..|.+..+
T Consensus 1 igil~~~~~~~~---~~~~~~~yi~~~Yv~~l~~aG~~vvpi~~~~~~~~l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~ 77 (273)
T cd01747 1 IGILTQPVDGAG---SNKTGHSYIAASYVKFLESAGARVVPIWINESEEYYDKLFKSINGILFPGGAVDIDTSGYARTAK 77 (273)
T ss_pred CeEEeeecCccc---cccchhHHHHHHHHHHHHHCCCeEEEEEeCCcHHHHHHHHhhCCEEEECCCCCcCCccccchHHH
Confidence 899999976532 23456899999999999999999999998877788898899999999999974 43 35666778
Q ss_pred HHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccE
Q 023716 141 KVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCL 220 (278)
Q Consensus 141 ~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~ 220 (278)
.+++++++++++|+++||||||+|||+|+.++||+..++...+.++.+.+++++.... .+.||+++|+++.+.+.+...
T Consensus 78 ~l~~~a~~~~~~g~~~Pv~GiClG~QlL~~~~gg~~~~~~~~~~~~~~~~l~~t~~~~-~s~lF~~~p~~l~~~l~~~~~ 156 (273)
T cd01747 78 IIYNLALERNDAGDYFPVWGTCLGFELLTYLTSGETLLLEATEATNSALPLNFTEDAL-QSRLFKRFPPDLLKSLATEPL 156 (273)
T ss_pred HHHHHHHHhhhcCCCCcEEEEcHHHHHHHHHhCCCccccCCCccccceEEEEEccccc-cChhhhcCCHHHHHHHhcccH
Confidence 9999999999999999999999999999999999755556666777788888876544 688999999999999999889
Q ss_pred EEEEEeeecCccchhhhccCCCCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 221 VMQNHHYGISPETLRKNLDLSRFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 221 ~~~~H~~~i~~~~~~~~~~L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
++++|+|+++++++....+|..+|+++|++.|++|.+||++||++++|+||+||||||
T Consensus 157 ~~~~Hs~~v~~~~~~~~~~l~~~~~vla~~~d~~g~~fis~ie~~~~pi~gvQFHPEk 214 (273)
T cd01747 157 TMNNHRYGISPENFTENGLLSDFFNVLTTNDDWNGVEFISTVEAYKYPIYGVQWHPEK 214 (273)
T ss_pred HHhhcccccCHhhcccccccccceEEEEEEecCCCceEEEEEEecCCceEEEecCCCc
Confidence 9999999999988877777889999999997766888999999999999999999997
No 3
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=100.00 E-value=6.6e-42 Score=300.57 Aligned_cols=197 Identities=29% Similarity=0.533 Sum_probs=129.7
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCC-CCCccchHH-
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGW-AKDGLYYAI- 138 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~-~~~p~~~~~- 138 (278)
|+|||++++.......+ .....+|++++|+++++++|++|++||++.+.+.++.+++.+||||||||. |++|.+|++
T Consensus 1 PvIGI~~~~~~~~~~~~-~~~~~~~i~~~Yv~~i~~aG~~pv~ip~~~~~~~~~~~l~~idGlll~GG~~Di~P~~y~~~ 79 (217)
T PF07722_consen 1 PVIGITAQPSESDSSDF-PGYPRSYIAASYVKAIEAAGGRPVPIPYDADDEELDELLDRIDGLLLPGGGSDIDPALYGEE 79 (217)
T ss_dssp -EEEEE-EE----SHHH-HHC-SEEEEHHHHHHHHHTT-EEEEE-SS--HHHHHHHHHCSSEEEE---SS-T-GGGGT--
T ss_pred CEEEEeCCccccccCCc-CchhHHHHhHHHHHHHHHcCCEEEEEccCCCHHHHHHHHhhcCEEEEcCCccchhHhhcCCc
Confidence 89999999964222111 245789999999999999999999999998899999999999999999999 898888754
Q ss_pred ----------HHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCc--ccccccccc--cccccccceecc-ccc-CCc
Q 023716 139 ----------VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKD--KNILESFNA--ADQASTLQFMEN-TSI-EGT 202 (278)
Q Consensus 139 ----------~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~--~~il~~~~~--~~~~~~l~~~~~-~~~-~~~ 202 (278)
.++.++.++.+++.++++||||||||||+||+++||+ +++...... |..... ....| +.+ .++
T Consensus 80 ~~~~~~~~~~~rd~~e~~l~~~a~~~~~PilGICrG~Q~lnv~~GGtl~q~~~~~~~~~~~~~~~~-~~~~h~v~i~~~s 158 (217)
T PF07722_consen 80 PSPESGYIDPERDIFELALIRNALGRGKPILGICRGMQLLNVAFGGTLYQDIPDQPGFPDHRQHPQ-DFPSHPVRIVPGS 158 (217)
T ss_dssp -BTTSHHHHHHHHHHHHHHHHHHCCTT--EEEETHHHHHHHHHCCSSEESCCCCSS-EEECEE-S--TS--EEEEEETTS
T ss_pred ccccCCCcCHHHHHHHHHHHHHHHhcCCCEEEEcHHHHHHHHHhCCCceeecccCcCccccccccc-ccccccceeccCc
Confidence 4689999999999999999999999999999999998 233221111 100000 11111 111 233
Q ss_pred ccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCCCCcEEEEEEccCCCCeEEEEEEeCC--CcEEEEeecCC
Q 023716 203 VFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKMLTTSADEDNKVYVSTVQAYD--YPVTAFQWHPE 277 (278)
Q Consensus 203 lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~~~~vlA~s~D~~g~~~ieaie~~~--~pi~GvQfHPE 277 (278)
++.. .++.....+|++|+ |+++.|+++|+++|++.| | .||+||..+ +|++|||||||
T Consensus 159 ~l~~-------~~~~~~~~vns~Hh-------q~v~~l~~~l~v~A~s~D--g--~iEaie~~~~~~~~~GvQwHPE 217 (217)
T PF07722_consen 159 LLAK-------ILGSEEIEVNSFHH-------QAVKPLGEGLRVTARSPD--G--VIEAIESPEHKYPILGVQWHPE 217 (217)
T ss_dssp TCCC-------TSHHCTEEEEEEEC-------EEECCHHCCEEEEEEECT--S--SEEEEEECCESS-EEEESS-CC
T ss_pred hHHH-------HhCcCcceeecchh-------hhhhccCCCceEEEEecC--C--cEEEEEEcCCCCCEEEEEeCCC
Confidence 3222 22323455655444 666779999999999987 8 799999988 46999999999
No 4
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=100.00 E-value=5.3e-40 Score=286.03 Aligned_cols=196 Identities=26% Similarity=0.372 Sum_probs=152.4
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchH
Q 023716 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYA 137 (278)
Q Consensus 58 ~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~ 137 (278)
|.||+|||++.......+ + ++...+|....|++++..+|+.|+.+|...+.+.+..+++.+||||||||.+++|.+|+
T Consensus 1 ~~kpvIGIt~~~~~~~~~-~-~~~~~~~~~~~yv~ai~~aGg~pillP~~~d~~~~~~~l~~iDgliltGg~nV~P~~YG 78 (243)
T COG2071 1 MSKPVIGITADLIQEIVG-F-DGNPWSYLPYDYVDAIIKAGGIPILLPALEDPEDARQYLDLIDGLILTGGSNVDPSLYG 78 (243)
T ss_pred CCCCEEEEecchhccccc-c-CCccHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHhhccEEEecCCCcCCHHHcC
Confidence 579999999988653322 1 35679999999999999999999999977778889999999999999999888888885
Q ss_pred H----------------HHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCc--ccccccc--cccccccccceecc-
Q 023716 138 I----------------VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKD--KNILESF--NAADQASTLQFMEN- 196 (278)
Q Consensus 138 ~----------------~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~--~~il~~~--~~~~~~~~l~~~~~- 196 (278)
+ ...+++.|++++ +||||||||+|+||+++||+ +++.+.. ..|.+..+.....|
T Consensus 79 ee~~~~~~~~~p~RD~~E~aLi~~ALe~~-----iPILgICRG~QllNVa~GGtL~q~i~~~~~~~~H~~~~~~~~~~H~ 153 (243)
T COG2071 79 EEPSEKDGPYDPERDAFELALIRAALERG-----IPILGICRGLQLLNVALGGTLYQDISEQPGHIDHRQPNPVHIESHE 153 (243)
T ss_pred CCCCcccCCCCccccHHHHHHHHHHHHcC-----CCEEEEccchHHHHHHhcCeeehhhhcccccccccCCCCcccceeE
Confidence 4 237888888888 99999999999999999998 2332111 13544444443222
Q ss_pred ccc-CCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCCCCcEEEEEEccCCCCeEEEEEEeCCC-cEEEEee
Q 023716 197 TSI-EGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKMLTTSADEDNKVYVSTVQAYDY-PVTAFQW 274 (278)
Q Consensus 197 ~~~-~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~~~~vlA~s~D~~g~~~ieaie~~~~-pi~GvQf 274 (278)
+.+ .+ +.+.+.+++....+|+.|+ |++++|+++|+|+|++.| | +|||||+++. .++||||
T Consensus 154 V~i~~~-------s~La~i~g~~~~~VNS~Hh-------QaIk~La~~L~V~A~a~D--G--~VEAie~~~~~fvlGVQW 215 (243)
T COG2071 154 VHIEPG-------SKLAKILGESEFMVNSFHH-------QAIKKLAPGLVVEARAPD--G--TVEAVEVKNDAFVLGVQW 215 (243)
T ss_pred EEecCC-------ccHHHhcCccceeecchHH-------HHHHHhCCCcEEEEECCC--C--cEEEEEecCCceEEEEec
Confidence 211 11 2355666654367787666 999999999999999987 9 9999999975 4699999
Q ss_pred cCCC
Q 023716 275 HPEV 278 (278)
Q Consensus 275 HPEk 278 (278)
|||+
T Consensus 216 HPE~ 219 (243)
T COG2071 216 HPEY 219 (243)
T ss_pred Chhh
Confidence 9995
No 5
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=100.00 E-value=7.4e-34 Score=255.02 Aligned_cols=193 Identities=21% Similarity=0.323 Sum_probs=134.0
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCC-ChhhHHHhcccCCEEEEcCCC-CCCcc
Q 023716 57 LNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGW-AKDGL 134 (278)
Q Consensus 57 ~~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~-~~~~l~~~l~~iDGlIl~GG~-~~~p~ 134 (278)
.|.||+|||+++..... +...+++...|+++++++|+.++++|+.. +.+.+++.++.+|||||+||+ +++|.
T Consensus 4 ~m~~P~Igi~~~~~~~~------~~~~~~~~~~y~~~i~~aGg~pv~lp~~~~~~~~~~~~l~~~DGlil~GG~~dv~P~ 77 (254)
T PRK11366 4 IMNNPVIGVVMCRNRLK------GHATQTLQEKYLNAIIHAGGLPIALPHALAEPSLLEQLLPKLDGIYLPGSPSNVQPH 77 (254)
T ss_pred CCCCCEEEEeCCCcccC------cchHHHHHHHHHHHHHHCCCEEEEecCCCCCHHHHHHHHHhCCEEEeCCCCCCcCHh
Confidence 46799999998653211 22367899999999999999999999754 345667778899999999985 67665
Q ss_pred chHH--------------HHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCcc--ccccccc--cccccccc----c
Q 023716 135 YYAI--------------VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDK--NILESFN--AADQASTL----Q 192 (278)
Q Consensus 135 ~~~~--------------~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~~--~il~~~~--~~~~~~~l----~ 192 (278)
+|++ ...+++.+++++ +||||||||||+||+++||+. ++.+... .|...... .
T Consensus 78 ~yg~~~~~~~~~~~rD~~e~~li~~a~~~~-----~PILGICrG~Qllnva~GGtl~~~~~~~~~~~~h~~~~~~~~~~~ 152 (254)
T PRK11366 78 LYGENGDEPDADPGRDLLSMALINAALERR-----IPIFAICRGLQELVVATGGSLHRKLCEQPELLEHREDPELPVEQQ 152 (254)
T ss_pred hcCCCCCCCCCChhHHHHHHHHHHHHHHCC-----CCEEEECHhHHHHHHHhCCeEeecccccccccccccCCccccccc
Confidence 4421 237788888888 999999999999999999983 2211011 12111100 0
Q ss_pred e-ecc-ccc-CCcccccCchhHHHhhCC-ccEEEEEEeeecCccchhhhccCCCCcEEEEEEccCCCCeEEEEEEeCCCc
Q 023716 193 F-MEN-TSI-EGTVFQRFPPKLIKKLST-DCLVMQNHHYGISPETLRKNLDLSRFFKMLTTSADEDNKVYVSTVQAYDYP 268 (278)
Q Consensus 193 ~-~~~-~~~-~~~lf~~~p~~l~~~l~~-~~~~~~~H~~~i~~~~~~~~~~L~~~~~vlA~s~D~~g~~~ieaie~~~~p 268 (278)
+ ..| +.+ .+.+ +...++. ....+|+.|+ |++.+++++++++|++.| | .|||||+++++
T Consensus 153 ~~~~h~v~~~~~s~-------l~~i~~~~~~~~Vns~H~-------q~V~~l~~gl~v~A~s~d--g--~ieAie~~~~~ 214 (254)
T PRK11366 153 YAPSHEVQVEEGGL-------LSALLPECSNFWVNSLHG-------QGAKVVSPRLRVEARSPD--G--LVEAVSVINHP 214 (254)
T ss_pred cCCceEEEECCCCc-------HHHhcCCCceEEeehHHH-------HHHhhcccceEEEEEcCC--C--cEEEEEeCCCC
Confidence 0 001 111 1222 2223322 3455676444 788899999999999977 8 89999999888
Q ss_pred E-EEEeecCCC
Q 023716 269 V-TAFQWHPEV 278 (278)
Q Consensus 269 i-~GvQfHPEk 278 (278)
+ +|||||||+
T Consensus 215 ~~~GVQwHPE~ 225 (254)
T PRK11366 215 FALGVQWHPEW 225 (254)
T ss_pred CEEEEEeCCCc
Confidence 5 999999995
No 6
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.95 E-value=4e-27 Score=202.65 Aligned_cols=156 Identities=27% Similarity=0.406 Sum_probs=120.7
Q ss_pred EEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccch------
Q 023716 63 IGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYY------ 136 (278)
Q Consensus 63 IGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~------ 136 (278)
|||+++...... .....+|+..+++++++.+|+.++++|++.+.+++.+.++.+||||||||++..+..|
T Consensus 1 ~gi~~~~~~~~~----~~~~~~~~~~~~~~~l~~~G~~~~iv~~~~~~~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~ 76 (189)
T cd01745 1 IGITARLREEEG----GYERRDYLNQYYVDAVRKAGGLPVLLPPVDDEEDLEQYLELLDGLLLTGGGDVDPPLYGEEPHP 76 (189)
T ss_pred CEEcCccccccC----ccHHHHHHHHHHHHHHHHCCCEEEEeCCCCChHHHHHHHhhCCEEEECCCCCCChhhcCCCCCc
Confidence 688887543221 1233799999999999999999999999877666777788999999999987543321
Q ss_pred ----------HHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCcccccccccccccccccceecccccCCccccc
Q 023716 137 ----------AIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQR 206 (278)
Q Consensus 137 ----------~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~ 206 (278)
....++++.+++.+ +||||||+|||+|+.++||+. .. ..
T Consensus 77 ~~~~~~~~r~~~~~~~~~~~~~~~-----~PilgiC~G~Q~l~~~~Gg~v--~~--------------------~~---- 125 (189)
T cd01745 77 ELGPIDPERDAFELALLRAALERG-----KPILGICRGMQLLNVALGGTL--YQ--------------------DI---- 125 (189)
T ss_pred ccCCCChhHHHHHHHHHHHHHHCC-----CCEEEEcchHHHHHHHhCCeE--Ec--------------------CC----
Confidence 12246777788777 999999999999999999982 10 00
Q ss_pred CchhHHHhhCCccEEEEEEeeecCccchhhhccCCCCcEEEEEEccCCCCeEEEEEEeCC-CcEEEEeecCCC
Q 023716 207 FPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKMLTTSADEDNKVYVSTVQAYD-YPVTAFQWHPEV 278 (278)
Q Consensus 207 ~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~~~~vlA~s~D~~g~~~ieaie~~~-~pi~GvQfHPEk 278 (278)
.+..+|+ +.+.+++++++++|++.| | .++++++++ .+++|+|||||.
T Consensus 126 -------------~v~~~H~--------~~v~~~~~~~~vla~~~d--~--~vea~~~~~~~~~~gvQfHPE~ 173 (189)
T cd01745 126 -------------RVNSLHH--------QAIKRLADGLRVEARAPD--G--VIEAIESPDRPFVLGVQWHPEW 173 (189)
T ss_pred -------------ceechHH--------HHHhhcCCCCEEEEECCC--C--cEEEEEeCCCCeEEEEecCCCc
Confidence 1334577 456678999999999866 7 799999987 689999999995
No 7
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=99.95 E-value=2.2e-26 Score=196.21 Aligned_cols=153 Identities=22% Similarity=0.374 Sum_probs=109.0
Q ss_pred HHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHH
Q 023716 89 SYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELL 168 (278)
Q Consensus 89 syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL 168 (278)
+++++++++|+++++++++.+.+++ ....+|||||+||+. ++.......++++++++++ +||||||+|+|+|
T Consensus 11 ~~~~~l~~~G~~~~~~~~~~~~~~~--~~~~~dgiil~GG~~-~~~~~~~~~~~~~~~~~~~-----~PvlGIC~G~Q~l 82 (178)
T cd01744 11 NILRELLKRGCEVTVVPYNTDAEEI--LKLDPDGIFLSNGPG-DPALLDEAIKTVRKLLGKK-----IPIFGICLGHQLL 82 (178)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHH--hhcCCCEEEECCCCC-ChhHhHHHHHHHHHHHhCC-----CCEEEECHHHHHH
Confidence 5899999999999999998765543 235799999999985 3333345568899999888 9999999999999
Q ss_pred HHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCCCCcEEEE
Q 023716 169 TMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKMLT 248 (278)
Q Consensus 169 ~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~~~~vlA 248 (278)
+.++||+.... ....+....++... . .. ....+.++|++++.+ ..+|++++++|
T Consensus 83 ~~~~Gg~v~~~-~~~~~g~~~~v~~~-----~-------~~-------~~~~v~~~H~~~v~~------~~lp~~~~v~a 136 (178)
T cd01744 83 ALALGAKTYKM-KFGHRGSNHPVKDL-----I-------TG-------RVYITSQNHGYAVDP------DSLPGGLEVTH 136 (178)
T ss_pred HHHcCCceecC-CCCCCCCceeeEEc-----C-------CC-------CcEEEEcCceEEEcc------cccCCceEEEE
Confidence 99999984211 11111111111100 0 00 011345678876643 25788999999
Q ss_pred EEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 249 TSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 249 ~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
++.+ ++ .++++++++.|+||+|||||+
T Consensus 137 ~s~~-~~--~i~a~~~~~~~i~GvQfHPE~ 163 (178)
T cd01744 137 VNLN-DG--TVEGIRHKDLPVFSVQFHPEA 163 (178)
T ss_pred EECC-CC--cEEEEEECCCCeEEEeeCCCC
Confidence 9853 26 799999999999999999995
No 8
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=99.94 E-value=1.3e-26 Score=199.13 Aligned_cols=164 Identities=15% Similarity=0.184 Sum_probs=114.1
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEeCCC-ChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEE
Q 023716 81 TNASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (278)
Q Consensus 81 ~~~~yi~~syv~~le~~Ga~~v~i~~~~-~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVL 159 (278)
+++||. .+.+++|++.|+.+.++++++ +.+++.. .+.|||||+||+.. |...+....+++. ++++ +|||
T Consensus 7 n~Dsft-~nl~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iils~GPg~-p~~~~~~~~~~~~-~~~~-----~PiL 76 (187)
T PRK08007 7 NYDSFT-WNLYQYFCELGADVLVKRNDALTLADIDA--LKPQKIVISPGPCT-PDEAGISLDVIRH-YAGR-----LPIL 76 (187)
T ss_pred CCCccH-HHHHHHHHHCCCcEEEEeCCCCCHHHHHh--cCCCEEEEcCCCCC-hHHCCccHHHHHH-hcCC-----CCEE
Confidence 345664 458899999999999999874 4444432 36899999999973 3322223456654 4455 9999
Q ss_pred EEechHHHHHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhcc
Q 023716 160 AHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLD 239 (278)
Q Consensus 160 GIClG~QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~ 239 (278)
|||+|+|+|+.++||+..-. ....+....++... .+.+|.+++. ...+.++|++.+.+ .+
T Consensus 77 GIClG~Q~la~a~Gg~v~~~-~~~~~g~~~~v~~~-----~~~l~~~~~~--------~~~v~~~H~~~v~~------~~ 136 (187)
T PRK08007 77 GVCLGHQAMAQAFGGKVVRA-AKVMHGKTSPITHN-----GEGVFRGLAN--------PLTVTRYHSLVVEP------DS 136 (187)
T ss_pred EECHHHHHHHHHcCCEEEeC-CCcccCCceEEEEC-----CCCcccCCCC--------CcEEEEcchhEEcc------CC
Confidence 99999999999999984211 11122222232211 3345555432 34677889976532 25
Q ss_pred CCCCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 240 LSRFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 240 L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
+|++++++|++.| | .+++++++++|++|||||||+
T Consensus 137 lp~~~~v~a~~~~--~--~i~a~~~~~~~i~GvQfHPE~ 171 (187)
T PRK08007 137 LPACFEVTAWSET--R--EIMGIRHRQWDLEGVQFHPES 171 (187)
T ss_pred CCCCeEEEEEeCC--C--cEEEEEeCCCCEEEEEeCCcc
Confidence 8999999999976 7 799999999999999999996
No 9
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=99.94 E-value=1.3e-26 Score=199.06 Aligned_cols=156 Identities=22% Similarity=0.338 Sum_probs=112.6
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHH
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFEL 167 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~Ql 167 (278)
.+..+++++.|+++.+++++.+.+++.+. ++||||||||+... +......+++++++++ +||||||+|||+
T Consensus 12 ~~l~~~l~~~g~~~~~~~~~~~~~~~~~~--~~~glii~Gg~~~~--~~~~~~~~i~~~~~~~-----~PilGIC~G~Ql 82 (188)
T TIGR00888 12 QLIARRLRELGVYSELVPNTTPLEEIREK--NPKGIILSGGPSSV--YAENAPRADEKIFELG-----VPVLGICYGMQL 82 (188)
T ss_pred HHHHHHHHHcCCEEEEEeCCCCHHHHhhc--CCCEEEECCCCCCc--CcCCchHHHHHHHhCC-----CCEEEECHHHHH
Confidence 46778999999999999998876665542 36799999998631 2122346778888888 999999999999
Q ss_pred HHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCCCCcEEE
Q 023716 168 LTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKML 247 (278)
Q Consensus 168 L~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~~~~vl 247 (278)
|+.++||+. ......+....++..+. .+.+|..++. ...++.+|+++ +..+|++++++
T Consensus 83 l~~~lgg~v--~~~~~~~~g~~~v~~~~----~~~l~~~~~~--------~~~~~~~H~~~--------v~~l~~~~~vl 140 (188)
T TIGR00888 83 MAKQLGGEV--GRAEKREYGKAELEILD----EDDLFRGLPD--------ESTVWMSHGDK--------VKELPEGFKVL 140 (188)
T ss_pred HHHhcCceE--ecCCCccceeEEEEEec----CCHhhcCCCC--------CcEEEeEccce--------eecCCCCCEEE
Confidence 999999983 22222222222222221 3445554433 33567788864 35689999999
Q ss_pred EEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 248 TTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 248 A~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
|++.+ + .+++++++++|+||+|||||+
T Consensus 141 a~~~~--~--~v~a~~~~~~~~~g~QfHPE~ 167 (188)
T TIGR00888 141 ATSDN--C--PVAAMAHEEKPIYGVQFHPEV 167 (188)
T ss_pred EECCC--C--CeEEEEECCCCEEEEeeCCcc
Confidence 99875 5 799999998899999999996
No 10
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=99.94 E-value=1.8e-26 Score=198.68 Aligned_cols=163 Identities=17% Similarity=0.312 Sum_probs=112.9
Q ss_pred chhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEE
Q 023716 82 NASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (278)
Q Consensus 82 ~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGI 161 (278)
.++|... .++++++.|..+.+++++... .+.++.+||||++||++. +..+.....+++. ++++ +|+|||
T Consensus 10 ~dsf~~~-i~~~l~~~g~~~~v~~~~~~~---~~~l~~~d~iIi~gGp~~-~~~~~~~~~~i~~-~~~~-----~PiLGI 78 (190)
T PRK06895 10 HDSFTFN-LVDLIRKLGVPMQVVNVEDLD---LDEVENFSHILISPGPDV-PRAYPQLFAMLER-YHQH-----KSILGV 78 (190)
T ss_pred CCchHHH-HHHHHHHcCCcEEEEECCccC---hhHhccCCEEEECCCCCC-hHHhhHHHHHHHH-hcCC-----CCEEEE
Confidence 3555544 889999999999988865321 223667999999999984 3334444455554 4556 999999
Q ss_pred echHHHHHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCC
Q 023716 162 CLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLS 241 (278)
Q Consensus 162 ClG~QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~ 241 (278)
|+|||+|+.++||++.-... ..|....++... . .+.+|.++|. +..++++|++.+.+. +++
T Consensus 79 ClG~Qlla~~~Gg~V~~~~~-~~~g~~~~v~~~---~-~~~l~~~~~~--------~~~v~~~Hs~~v~~~------~lp 139 (190)
T PRK06895 79 CLGHQTLCEFFGGELYNLNN-VRHGQQRPLKVR---S-NSPLFDGLPE--------EFNIGLYHSWAVSEE------NFP 139 (190)
T ss_pred cHHHHHHHHHhCCeEeecCC-CccCceEEEEEC---C-CChhhhcCCC--------ceEEEcchhheeccc------ccC
Confidence 99999999999998421111 122222222211 1 3455555443 346788999876442 467
Q ss_pred CCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 242 RFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 242 ~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
+.+.++|.+.+ + ++++++++++|+||+||||||
T Consensus 140 ~~l~~~a~~~~--~--~i~a~~~~~~pi~GvQFHPE~ 172 (190)
T PRK06895 140 TPLEITAVCDE--N--VVMAMQHKTLPIYGVQFHPES 172 (190)
T ss_pred CCeEEEEECCC--C--cEEEEEECCCCEEEEEeCCCc
Confidence 88999988754 5 899999999999999999996
No 11
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=99.94 E-value=2.6e-26 Score=201.34 Aligned_cols=160 Identities=16% Similarity=0.243 Sum_probs=115.3
Q ss_pred HHHHHHHHHcCCeEEEEeCCCCh-hhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHH
Q 023716 88 ASYVKFVESAGARVIPLIYNEPE-DVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFE 166 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~-~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~Q 166 (278)
..+++++++.|.++++++++.+. +...++++.+|||||+||+. ++........+++.+++++ +||||||+|||
T Consensus 14 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~-~~~~~~~~~~~i~~~~~~~-----~PiLGIC~G~Q 87 (214)
T PRK07765 14 FNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPG-TPERAGASIDMVRACAAAG-----TPLLGVCLGHQ 87 (214)
T ss_pred HHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCC-ChhhcchHHHHHHHHHhCC-----CCEEEEccCHH
Confidence 46889999999999999988642 23444567899999999987 3433333457888888888 99999999999
Q ss_pred HHHHHHhCcccccccccc-cccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCCCCcE
Q 023716 167 LLTMIISKDKNILESFNA-ADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFK 245 (278)
Q Consensus 167 lL~~~~Gg~~~il~~~~~-~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~~~~ 245 (278)
+|+.++||+.. ..... +.....+.++ ...+|.+++. ...++.+|++.+.+ ..+|++++
T Consensus 88 lla~a~GG~v~--~~~~~~~g~~~~v~~~-----~~~~~~~~~~--------~~~v~~~H~~~v~~------~~lp~~~~ 146 (214)
T PRK07765 88 AIGVAFGATVD--RAPELLHGKTSSVHHT-----GVGVLAGLPD--------PFTATRYHSLTILP------ETLPAELE 146 (214)
T ss_pred HHHHHhCCEEe--eCCCCccCceeEEEEC-----CCccccCCCC--------ccEEEecchheEec------ccCCCceE
Confidence 99999999842 21111 1111122111 2334444332 23577789875532 25899999
Q ss_pred EEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 246 MLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 246 vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
++|++.| + .++++++++.++||||||||+
T Consensus 147 vla~s~~--~--~vqa~~~~~~~i~gvQfHPE~ 175 (214)
T PRK07765 147 VTARTDS--G--VIMAVRHRELPIHGVQFHPES 175 (214)
T ss_pred EEEEcCC--C--cEEEEEeCCCCEEEEeeCCCc
Confidence 9999976 6 799999999899999999995
No 12
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.94 E-value=7.1e-26 Score=211.89 Aligned_cols=183 Identities=17% Similarity=0.296 Sum_probs=126.9
Q ss_pred ccccCCCCCCCCCCC----CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcc
Q 023716 43 LSVLVPRCPVPDSKL----NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLE 118 (278)
Q Consensus 43 ~~~~~~~~~~~~~~~----~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~ 118 (278)
.++..+||..+-... ...+.|.|+..- +..+++++|+++|++++++|++.+.+++.. .
T Consensus 156 ~~v~~vs~~~~~~~~~~~~~~~~~I~viD~G----------------~k~nivr~L~~~G~~v~vvp~~~~~~~i~~--~ 217 (360)
T PRK12564 156 DLVKEVSTKEPYPWPGPGGELKYKVVAIDFG----------------VKRNILRELAERGCRVTVVPATTTAEEILA--L 217 (360)
T ss_pred CCcceeCCCCCEECCCCCCCCCCEEEEEeCC----------------cHHHHHHHHHHCCCEEEEEeCCCCHHHHHh--c
Confidence 345677777643221 124567776531 235799999999999999999876655543 2
Q ss_pred cCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCcccccccccccccccccceecccc
Q 023716 119 LVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTS 198 (278)
Q Consensus 119 ~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~ 198 (278)
.+|||||+||+. +|.......++++++++++ +||||||+|+|+|+.++||+...+ .+..+....++... .
T Consensus 218 ~~DGIvLSgGPg-dp~~~~~~~~~i~~~~~~~-----~PilGIClG~QlLa~a~Gg~v~kl-~~gh~G~~~pv~~~---~ 287 (360)
T PRK12564 218 NPDGVFLSNGPG-DPAALDYAIEMIRELLEKK-----IPIFGICLGHQLLALALGAKTYKM-KFGHRGANHPVKDL---E 287 (360)
T ss_pred CCCEEEEeCCCC-ChHHHHHHHHHHHHHHHcC-----CeEEEECHHHHHHHHHhCCcEecc-CCCccCCceeeEEC---C
Confidence 699999999986 4444445558888888877 999999999999999999984211 12112111121110 0
Q ss_pred cCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCCCCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 199 IEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 199 ~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
. +....+.++|+++|.++ ++++++++++++.+ || .||+|+++++|+||||||||+
T Consensus 288 -~---------------~~~~its~~H~~~V~~~------~lp~~l~v~a~~~~-Dg--~iegi~~~~~pi~gVQfHPE~ 342 (360)
T PRK12564 288 -T---------------GKVEITSQNHGFAVDED------SLPANLEVTHVNLN-DG--TVEGLRHKDLPAFSVQYHPEA 342 (360)
T ss_pred -C---------------CcEEEEecCcccEEccc------ccCCceEEEEEeCC-CC--cEEEEEECCCCEEEEEeCCcC
Confidence 0 01124566899877553 46788999999853 37 799999999999999999995
No 13
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=99.94 E-value=5.4e-26 Score=195.52 Aligned_cols=164 Identities=15% Similarity=0.215 Sum_probs=113.0
Q ss_pred chhhhHHHHHHHHHHcCCeEEEEeCCC-ChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEE
Q 023716 82 NASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYA 160 (278)
Q Consensus 82 ~~~yi~~syv~~le~~Ga~~v~i~~~~-~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLG 160 (278)
.+||. .++++++++.|+.+++++++. +.+++.+ ..+|||||+||+.. +.......++++++ .++ +||||
T Consensus 8 ~dsft-~~~~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iilsgGpg~-p~~~~~~~~~i~~~-~~~-----~PvLG 77 (188)
T TIGR00566 8 YDSFT-YNLVQYFCELGAEVVVKRNDSLTLQEIEA--LLPLLIVISPGPCT-PNEAGISLEAIRHF-AGK-----LPILG 77 (188)
T ss_pred CcCHH-HHHHHHHHHcCCceEEEECCCCCHHHHHh--cCCCEEEEcCCCCC-hhhcchhHHHHHHh-ccC-----CCEEE
Confidence 45664 568899999999999999764 3444433 25899999999963 32222234677766 456 99999
Q ss_pred EechHHHHHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccC
Q 023716 161 HCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDL 240 (278)
Q Consensus 161 IClG~QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L 240 (278)
||+|||+|+.++||+..-.. ...|....++..+ .+.+|.+++. ...++.+|++.+.+ ..+
T Consensus 78 IC~G~Qll~~~~GG~v~~~~-~~~~g~~~~v~~~-----~~~~~~~l~~--------~~~v~~~H~~~v~~------~~l 137 (188)
T TIGR00566 78 VCLGHQAMGQAFGGDVVRAN-TVMHGKTSEIEHN-----GAGIFRGLFN--------PLTATRYHSLVVEP------ETL 137 (188)
T ss_pred ECHHHHHHHHHcCCEEeeCC-CccccceEEEEEC-----CCccccCCCC--------CcEEEEcccceEec------ccC
Confidence 99999999999999842111 1123223333221 2334444332 23567789976533 357
Q ss_pred CCCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 241 SRFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 241 ~~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
|++++++|++.+ +| .+++++++++|+||||||||+
T Consensus 138 ~~~~~v~a~s~~-~~--~v~a~~~~~~~i~gvQfHPE~ 172 (188)
T TIGR00566 138 PTCFPVTAWEEE-NI--EIMAIRHRDLPLEGVQFHPES 172 (188)
T ss_pred CCceEEEEEcCC-CC--EEEEEEeCCCCEEEEEeCCCc
Confidence 889999999864 35 799999999999999999996
No 14
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=99.94 E-value=6.6e-26 Score=193.95 Aligned_cols=161 Identities=17% Similarity=0.257 Sum_probs=110.1
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEe
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIC 162 (278)
.+| ...+.+++++.|+++.+++++.+.+.+.+ +..+||||++||+.. +......+.+.+ +++++ +|+||||
T Consensus 8 ~~~-~~~~~~~l~~~G~~~~~~~~~~~~~~~~~-~~~~dgvil~gG~~~-~~~~~~~~~i~~-~~~~~-----~PvlGIC 78 (184)
T cd01743 8 DSF-TYNLVQYLRELGAEVVVVRNDEITLEELE-LLNPDAIVISPGPGH-PEDAGISLEIIR-ALAGK-----VPILGVC 78 (184)
T ss_pred Ccc-HHHHHHHHHHcCCceEEEeCCCCCHHHHh-hcCCCEEEECCCCCC-cccchhHHHHHH-HHhcC-----CCEEEEC
Confidence 444 35688999999999999999877654433 478999999999873 211112233443 34556 9999999
Q ss_pred chHHHHHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCCC
Q 023716 163 LGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSR 242 (278)
Q Consensus 163 lG~QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~ 242 (278)
+|||+|+.++||+.... ....+....++... .+.+|..++ +...++++|++.+. .++.
T Consensus 79 ~G~Qlla~~~Gg~v~~~-~~~~~g~~~~v~~~-----~~~~~~~~~--------~~~~~~~~H~~~v~--------~~~~ 136 (184)
T cd01743 79 LGHQAIAEAFGGKVVRA-PEPMHGKTSEIHHD-----GSGLFKGLP--------QPFTVGRYHSLVVD--------PDPL 136 (184)
T ss_pred HhHHHHHHHhCCEEEeC-CCCCcCceeEEEEC-----CCccccCCC--------CCcEEEeCcEEEEe--------cCCC
Confidence 99999999999984211 11111112222211 344554443 33467888997653 3444
Q ss_pred C--cEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 243 F--FKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 243 ~--~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
+ ++++|.+.+ + .+++++++++|+||+||||||
T Consensus 137 ~~~~~~la~~~~--~--~v~a~~~~~~~i~gvQfHPE~ 170 (184)
T cd01743 137 PDLLEVTASTED--G--VIMALRHRDLPIYGVQFHPES 170 (184)
T ss_pred CceEEEEEeCCC--C--eEEEEEeCCCCEEEEeeCCCc
Confidence 4 899999866 6 899999999999999999997
No 15
>PRK05670 anthranilate synthase component II; Provisional
Probab=99.94 E-value=5.1e-26 Score=195.63 Aligned_cols=162 Identities=17% Similarity=0.286 Sum_probs=110.5
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCC-ChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEE
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~-~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGI 161 (278)
++|. .++++++++.|..+.+++++. +.+.+ +.+ .+|||||+||+.. +...+....+++. ++.+ +|||||
T Consensus 9 d~f~-~~i~~~l~~~g~~~~v~~~~~~~~~~~-~~~-~~dglIlsgGpg~-~~d~~~~~~~l~~-~~~~-----~PvLGI 78 (189)
T PRK05670 9 DSFT-YNLVQYLGELGAEVVVYRNDEITLEEI-EAL-NPDAIVLSPGPGT-PAEAGISLELIRE-FAGK-----VPILGV 78 (189)
T ss_pred CchH-HHHHHHHHHCCCcEEEEECCCCCHHHH-HhC-CCCEEEEcCCCCC-hHHcchHHHHHHH-hcCC-----CCEEEE
Confidence 4553 578999999999999999975 33333 233 3899999999863 2111223345554 3445 999999
Q ss_pred echHHHHHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCC
Q 023716 162 CLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLS 241 (278)
Q Consensus 162 ClG~QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~ 241 (278)
|+|||+|+.++||+..... ...+....++. + . .+.+|+.++. ...++++|++.+.+ .++|
T Consensus 79 ClG~Qlla~alGg~v~~~~-~~~~g~~~~v~---~-~-~~~l~~~~~~--------~~~v~~~H~~~v~~------~~lp 138 (189)
T PRK05670 79 CLGHQAIGEAFGGKVVRAK-EIMHGKTSPIE---H-D-GSGIFAGLPN--------PFTVTRYHSLVVDR------ESLP 138 (189)
T ss_pred CHHHHHHHHHhCCEEEecC-CcccCceeEEE---e-C-CCchhccCCC--------CcEEEcchhheecc------ccCC
Confidence 9999999999999842111 11122112221 1 1 3445544433 34677889976532 2488
Q ss_pred CCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 242 RFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 242 ~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
++++++|++.| + .+++++++++|+||+|||||+
T Consensus 139 ~~~~~la~s~~--~--~i~a~~~~~~~~~gvQfHPE~ 171 (189)
T PRK05670 139 DCLEVTAWTDD--G--EIMGVRHKELPIYGVQFHPES 171 (189)
T ss_pred CceEEEEEeCC--C--cEEEEEECCCCEEEEeeCCCc
Confidence 99999999955 6 799999999999999999996
No 16
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.94 E-value=9.4e-26 Score=191.14 Aligned_cols=165 Identities=16% Similarity=0.271 Sum_probs=121.4
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEeCC-CChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEE
Q 023716 81 TNASYIAASYVKFVESAGARVIPLIYN-EPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (278)
Q Consensus 81 ~~~~yi~~syv~~le~~Ga~~v~i~~~-~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVL 159 (278)
+++||.- ..++.+++.|+.+.++..+ .+.+.++ ..+.|+|+|+-|+. .|.-++...++++++ ..+ +|||
T Consensus 9 NyDSFty-NLv~yl~~lg~~v~V~rnd~~~~~~~~--~~~pd~iviSPGPG-~P~d~G~~~~~i~~~-~~~-----~PiL 78 (191)
T COG0512 9 NYDSFTY-NLVQYLRELGAEVTVVRNDDISLELIE--ALKPDAIVISPGPG-TPKDAGISLELIRRF-AGR-----IPIL 78 (191)
T ss_pred CccchHH-HHHHHHHHcCCceEEEECCccCHHHHh--hcCCCEEEEcCCCC-ChHHcchHHHHHHHh-cCC-----CCEE
Confidence 3466653 4788999999999999887 2333222 23589999999998 455444455777766 556 9999
Q ss_pred EEechHHHHHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhcc
Q 023716 160 AHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLD 239 (278)
Q Consensus 160 GIClG~QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~ 239 (278)
|||+|+|.|+.++||++... ....|+..+.+... +..+|+++|+++ .+..+|+..+.++ .
T Consensus 79 GVCLGHQai~~~fGg~V~~a-~~~~HGK~s~i~h~-----g~~iF~glp~~f--------~v~RYHSLvv~~~------~ 138 (191)
T COG0512 79 GVCLGHQAIAEAFGGKVVRA-KEPMHGKTSIITHD-----GSGLFAGLPNPF--------TVTRYHSLVVDPE------T 138 (191)
T ss_pred EECccHHHHHHHhCCEEEec-CCCcCCeeeeeecC-----CcccccCCCCCC--------EEEeeEEEEecCC------C
Confidence 99999999999999985322 22345544432211 567888877654 6778899765443 4
Q ss_pred CCCCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 240 LSRFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 240 L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
+|+.++++|++.| +| .|++++++++|++|||||||.
T Consensus 139 lP~~l~vtA~~~d-~~--~IMai~h~~~pi~gvQFHPES 174 (191)
T COG0512 139 LPEELEVTAESED-GG--VIMAVRHKKLPIYGVQFHPES 174 (191)
T ss_pred CCCceEEEEEeCC-CC--EEEEEeeCCCCEEEEecCCcc
Confidence 8999999999976 35 899999999999999999995
No 17
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.94 E-value=3.1e-26 Score=195.06 Aligned_cols=156 Identities=20% Similarity=0.292 Sum_probs=108.9
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHH
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFEL 167 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~Ql 167 (278)
.++.++|++.|+.+++++++.+.+ ...++++||||||||+... +......+.++.++.+ +|+||||+|||+
T Consensus 12 ~~~~~~l~~~G~~~~~~~~~~~~~--~~~~~~~dgvIl~Gg~~~~--~~~~~~~~~~~~~~~~-----~PilGIC~G~Ql 82 (181)
T cd01742 12 HLIARRVRELGVYSEILPNTTPLE--EIKLKNPKGIILSGGPSSV--YEEDAPRVDPEIFELG-----VPVLGICYGMQL 82 (181)
T ss_pred HHHHHHHHhcCceEEEecCCCChh--hhcccCCCEEEECCCcccc--cccccchhhHHHHhcC-----CCEEEEcHHHHH
Confidence 357889999999999999886544 2347789999999997621 1110123445555556 999999999999
Q ss_pred HHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCCCCcEEE
Q 023716 168 LTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKML 247 (278)
Q Consensus 168 L~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~~~~vl 247 (278)
|+.++||+. ......+.....+..+ . .+.+|..+|. ...++.+|++ .+.+++++++++
T Consensus 83 l~~~~gg~v--~~~~~~~~G~~~v~~~---~-~~~l~~~~~~--------~~~~~~~H~~--------~v~~l~~~~~~l 140 (181)
T cd01742 83 IAKALGGKV--ERGDKREYGKAEIEID---D-SSPLFEGLPD--------EQTVWMSHGD--------EVVKLPEGFKVI 140 (181)
T ss_pred HHHhcCCeE--EeCCCCcceEEEEEec---C-CChhhcCCCC--------ceEEEcchhh--------hhhhcCCCcEEE
Confidence 999999973 2222122222222111 1 4455555543 3356677885 446789999999
Q ss_pred EEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 248 TTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 248 A~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
|++.+ + .+++++++++++||+|||||+
T Consensus 141 a~~~~--~--~i~a~~~~~~~~~g~QfHPE~ 167 (181)
T cd01742 141 ASSDN--C--PVAAIANEEKKIYGVQFHPEV 167 (181)
T ss_pred EeCCC--C--CEEEEEeCCCcEEEEEcCCcc
Confidence 99975 5 699999988899999999996
No 18
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=99.94 E-value=2.1e-25 Score=208.41 Aligned_cols=181 Identities=19% Similarity=0.341 Sum_probs=122.7
Q ss_pred cccCCCCCCCCCCC----CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhccc
Q 023716 44 SVLVPRCPVPDSKL----NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLEL 119 (278)
Q Consensus 44 ~~~~~~~~~~~~~~----~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~ 119 (278)
++..+||..+-... ..++.|.|+..- . ..+++++|++.|++++++|++.+.+++.+. .
T Consensus 153 ~v~~vs~~~~~~~~~~~~~~~~~i~viD~G-------------~---k~ni~~~L~~~G~~v~vvp~~~~~~~i~~~--~ 214 (358)
T TIGR01368 153 LVAEVSTKEPYTWGQKRGGKKKRVVVIDFG-------------V---KQNILRRLVKRGCEVTVVPYDTDAEEIKKY--N 214 (358)
T ss_pred ccceeccCCCEEeCCCCCCCccEEEEEeCC-------------c---HHHHHHHHHHCCCEEEEEcCCCCHHHHHhh--C
Confidence 45677787653332 123677777541 1 247999999999999999998765544321 4
Q ss_pred CCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCcccccccccccccccccceeccccc
Q 023716 120 VNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSI 199 (278)
Q Consensus 120 iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~ 199 (278)
.|||||+||++ +|.......++++++++ + +||||||+|+|+|+.++||+..-+ .+..+....++... .
T Consensus 215 pDGIiLSgGPg-dp~~~~~~i~~i~~~~~-~-----~PILGIClG~QlLa~a~Gg~v~kl-~~gh~G~nhpV~~~---~- 282 (358)
T TIGR01368 215 PDGIFLSNGPG-DPAAVEPAIETIRKLLE-K-----IPIFGICLGHQLLALAFGAKTYKM-KFGHRGGNHPVKDL---I- 282 (358)
T ss_pred CCEEEECCCCC-CHHHHHHHHHHHHHHHc-C-----CCEEEECHHHHHHHHHhCCceecc-CcCcCCCceeeEEC---C-
Confidence 69999999987 45444444567777775 6 999999999999999999983211 12112111121110 0
Q ss_pred CCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCC-CCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 200 EGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLS-RFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 200 ~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~-~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
.+++ .++.++|+++|.+++ ++ ++|++++++.+ || .||+++++++|+||||||||+
T Consensus 283 ~~~v---------------~itsqnH~~aV~~~~------l~~~~l~vta~~~n-Dg--~Vegi~h~~~pi~gVQfHPE~ 338 (358)
T TIGR01368 283 TGRV---------------EITSQNHGYAVDPDS------LPAGDLEVTHVNLN-DG--TVEGIRHKDLPVFSVQYHPEA 338 (358)
T ss_pred CCcE---------------EEeecCCCcEEcccc------cCCCceEEEEEECC-CC--cEEEEEECCCCEEEEEECCCC
Confidence 0111 134567999886543 34 68999999853 37 799999999999999999995
No 19
>PRK05637 anthranilate synthase component II; Provisional
Probab=99.94 E-value=2.4e-25 Score=194.35 Aligned_cols=174 Identities=14% Similarity=0.176 Sum_probs=115.0
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEe
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIC 162 (278)
++|. .+.++.|++.|+.+.+++++.+.+++.. ..+|||||+||+.. +.......++++.+. .+ +||||||
T Consensus 11 dsf~-~nl~~~l~~~g~~~~v~~~~~~~~~l~~--~~~~~iIlsgGPg~-~~d~~~~~~li~~~~-~~-----~PiLGIC 80 (208)
T PRK05637 11 DSFV-YNLVDAFAVAGYKCTVFRNTVPVEEILA--ANPDLICLSPGPGH-PRDAGNMMALIDRTL-GQ-----IPLLGIC 80 (208)
T ss_pred cCHH-HHHHHHHHHCCCcEEEEeCCCCHHHHHh--cCCCEEEEeCCCCC-HHHhhHHHHHHHHHh-CC-----CCEEEEc
Confidence 4454 4588999999999999999866555432 36899999999973 322222335555433 35 9999999
Q ss_pred chHHHHHHHHhCcccccccccccccccccceecccccCCcccccCchhH----HHhhCCccEEEEEEeeecCccchhhhc
Q 023716 163 LGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKL----IKKLSTDCLVMQNHHYGISPETLRKNL 238 (278)
Q Consensus 163 lG~QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l----~~~l~~~~~~~~~H~~~i~~~~~~~~~ 238 (278)
+|||+|+.++||+.. .....+.....+.++.+.. ...+|.++|.+. ...++.+..++.+|+ +.+.
T Consensus 81 lG~Qlla~alGG~V~--~~~~~~G~~~~i~~~~~~~-~~~l~~~~~~~~~~~~~~~~g~~~~V~~~H~--------~~v~ 149 (208)
T PRK05637 81 LGFQALLEHHGGKVE--PCGPVHGTTDNMILTDAGV-QSPVFAGLATDVEPDHPEIPGRKVPIARYHS--------LGCV 149 (208)
T ss_pred HHHHHHHHHcCCeec--cCCcccceEEEeEECCCCC-CCcccCCCCcccccccccccCCceEEEEech--------hhhh
Confidence 999999999999842 1111122222232322211 345676654211 112233344566787 5667
Q ss_pred cCCCCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 239 DLSRFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 239 ~L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
.+|++++++|++.+.++. +++++++++.++||||||||.
T Consensus 150 ~lp~~~~vlA~s~~~~~~-v~~a~~~~~~~~~GvQfHPE~ 188 (208)
T PRK05637 150 VAPDGMESLGTCSSEIGP-VIMAAETTDGKAIGLQFHPES 188 (208)
T ss_pred cCCCCeEEEEEecCCCCC-EEEEEEECCCCEEEEEeCCcc
Confidence 899999999998653222 789999999999999999994
No 20
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=99.93 E-value=5.1e-25 Score=190.11 Aligned_cols=166 Identities=17% Similarity=0.224 Sum_probs=110.6
Q ss_pred chhhhHHHHHHHHHHcCCeEEEEeCCC-ChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEE
Q 023716 82 NASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYA 160 (278)
Q Consensus 82 ~~~yi~~syv~~le~~Ga~~v~i~~~~-~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLG 160 (278)
.+||. .++++++++.|..+.+++++. +.+.+.+ ...|+++++||+.. +...+....++++ ++++ +||||
T Consensus 8 ~dsft-~~~~~~l~~~g~~~~~~~~~~~~~~~~~~--~~~~~iilsgGp~~-~~~~~~~~~~i~~-~~~~-----~PiLG 77 (193)
T PRK08857 8 YDSFT-YNLYQYFCELGAQVKVVRNDEIDIDGIEA--LNPTHLVISPGPCT-PNEAGISLQAIEH-FAGK-----LPILG 77 (193)
T ss_pred CCCcH-HHHHHHHHHCCCcEEEEECCCCCHHHHhh--CCCCEEEEeCCCCC-hHHCcchHHHHHH-hcCC-----CCEEE
Confidence 35554 468999999999999999874 3332222 25899999999862 2211122355554 4556 99999
Q ss_pred EechHHHHHHHHhCccccccccc-ccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhcc
Q 023716 161 HCLGFELLTMIISKDKNILESFN-AADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLD 239 (278)
Q Consensus 161 IClG~QlL~~~~Gg~~~il~~~~-~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~ 239 (278)
||+|+|+|+.++||+.. .... .+....++.. . .+.+|.+++. ...++++|++++.+ .+
T Consensus 78 IClG~Qlia~a~Gg~v~--~~~~~~~G~~~~~~~----~-~~~l~~~~~~--------~~~v~~~H~~~v~~------~~ 136 (193)
T PRK08857 78 VCLGHQAIAQVFGGQVV--RARQVMHGKTSPIRH----T-GRSVFKGLNN--------PLTVTRYHSLVVKN------DT 136 (193)
T ss_pred EcHHHHHHHHHhCCEEE--eCCCceeCceEEEEE----C-CCcccccCCC--------ccEEEEccEEEEEc------CC
Confidence 99999999999999842 2111 1211112211 1 3445555433 33677889986632 36
Q ss_pred CCCCcEEEEEEccCCC-CeEEEEEEeCCCcEEEEeecCCC
Q 023716 240 LSRFFKMLTTSADEDN-KVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 240 L~~~~~vlA~s~D~~g-~~~ieaie~~~~pi~GvQfHPEk 278 (278)
||++++++|++...++ ...|++++++++|+||||||||+
T Consensus 137 lp~~~~v~a~s~~~~~~~~~i~~~~~~~~pi~gvQfHPE~ 176 (193)
T PRK08857 137 LPECFELTAWTELEDGSMDEIMGFQHKTLPIEAVQFHPES 176 (193)
T ss_pred CCCCeEEEEEecCcCCCcceEEEEEeCCCCEEEEeeCCCc
Confidence 8999999999862113 24789999999999999999996
No 21
>PLN02335 anthranilate synthase
Probab=99.93 E-value=4e-25 Score=194.77 Aligned_cols=161 Identities=17% Similarity=0.266 Sum_probs=108.6
Q ss_pred HHHHHHHHHcCCeEEEEeCCC-ChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHH
Q 023716 88 ASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFE 166 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~-~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~Q 166 (278)
...+++|++.|..+.+++++. +.+.+. ..++|||||+||+.. |.-.+...++++ . .+.++||||||+|||
T Consensus 32 ~~i~~~L~~~g~~~~v~~~~~~~~~~~~--~~~~d~iVisgGPg~-p~d~~~~~~~~~-~-----~~~~~PiLGIClG~Q 102 (222)
T PLN02335 32 YNLCQYMGELGCHFEVYRNDELTVEELK--RKNPRGVLISPGPGT-PQDSGISLQTVL-E-----LGPLVPLFGVCMGLQ 102 (222)
T ss_pred HHHHHHHHHCCCcEEEEECCCCCHHHHH--hcCCCEEEEcCCCCC-hhhccchHHHHH-H-----hCCCCCEEEecHHHH
Confidence 468899999999999999864 333332 236899999999973 221111112222 1 244599999999999
Q ss_pred HHHHHHhCccccccccc-ccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCCCC-c
Q 023716 167 LLTMIISKDKNILESFN-AADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRF-F 244 (278)
Q Consensus 167 lL~~~~Gg~~~il~~~~-~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~~-~ 244 (278)
+|+.++||+... .... .+....++.++.. . .+.+|.++| +...++++|++++.++ +++.. +
T Consensus 103 lLa~alGg~v~~-~~~~~~~G~~~~v~~~~~-~-~~~Lf~~l~--------~~~~v~~~H~~~v~~~------~lp~~~~ 165 (222)
T PLN02335 103 CIGEAFGGKIVR-SPFGVMHGKSSPVHYDEK-G-EEGLFSGLP--------NPFTAGRYHSLVIEKD------TFPSDEL 165 (222)
T ss_pred HHHHHhCCEEEe-CCCccccCceeeeEECCC-C-CChhhhCCC--------CCCEEEechhheEecc------cCCCCce
Confidence 999999998421 1111 2323334433321 1 345666554 3446888999877543 35655 9
Q ss_pred EEEEEEccCCCCeEEEEEEeCCCc-EEEEeecCCC
Q 023716 245 KMLTTSADEDNKVYVSTVQAYDYP-VTAFQWHPEV 278 (278)
Q Consensus 245 ~vlA~s~D~~g~~~ieaie~~~~p-i~GvQfHPEk 278 (278)
+++|++.| | .|++++++++| +||||||||+
T Consensus 166 ~v~a~~~~--~--~v~ai~~~~~~~i~GvQfHPE~ 196 (222)
T PLN02335 166 EVTAWTED--G--LIMAARHRKYKHIQGVQFHPES 196 (222)
T ss_pred EEEEEcCC--C--CEEEEEecCCCCEEEEEeCCCC
Confidence 99999865 7 79999999988 8999999996
No 22
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=99.93 E-value=6.2e-25 Score=189.19 Aligned_cols=166 Identities=16% Similarity=0.187 Sum_probs=108.7
Q ss_pred chhhhHHHHHHHHHHcCCeEEEEeCCC-ChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEE
Q 023716 82 NASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYA 160 (278)
Q Consensus 82 ~~~yi~~syv~~le~~Ga~~v~i~~~~-~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLG 160 (278)
.+||. ...++.|++.|+.+.+++++. +.+++.+ ...|||||+||+.. +...+....+++. ++++ +||||
T Consensus 8 ~dsf~-~nl~~~l~~~~~~~~v~~~~~~~~~~~~~--~~~~~iilsgGP~~-~~~~~~~~~~i~~-~~~~-----~PiLG 77 (191)
T PRK06774 8 YDSFT-YNLYQYFCELGTEVMVKRNDELQLTDIEQ--LAPSHLVISPGPCT-PNEAGISLAVIRH-FADK-----LPILG 77 (191)
T ss_pred CCchH-HHHHHHHHHCCCcEEEEeCCCCCHHHHHh--cCCCeEEEcCCCCC-hHhCCCchHHHHH-hcCC-----CCEEE
Confidence 45664 457889999999999999874 4444433 26899999999973 2111112345543 3455 99999
Q ss_pred EechHHHHHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccC
Q 023716 161 HCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDL 240 (278)
Q Consensus 161 IClG~QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L 240 (278)
||+|||+|+.++||+..-... ..+. ..... .+ . .+.+|.+++ +...++++|++.+.+ .++
T Consensus 78 IC~G~Qlla~~~GG~v~~~~~-~~~G-~~~~~--~~-~-~~~lf~~l~--------~~~~v~~~Hs~~v~~------~~l 137 (191)
T PRK06774 78 VCLGHQALGQAFGARVVRARQ-VMHG-KTSAI--CH-S-GQGVFRGLN--------QPLTVTRYHSLVIAA------DSL 137 (191)
T ss_pred ECHHHHHHHHHhCCEEEeCCc-ceec-ceEEE--Ee-c-CchhhcCCC--------CCcEEEEeCcceeec------cCC
Confidence 999999999999998421111 1111 11111 11 1 334444433 334678889976532 357
Q ss_pred CCCcEEEEEEccCCCC-eEEEEEEeCCCcEEEEeecCCC
Q 023716 241 SRFFKMLTTSADEDNK-VYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 241 ~~~~~vlA~s~D~~g~-~~ieaie~~~~pi~GvQfHPEk 278 (278)
+++++++|++.+ ++. +.++++++++.|+||||||||+
T Consensus 138 p~~~~vlA~s~~-d~~~~~i~~~~~~~~~i~GvQfHPE~ 175 (191)
T PRK06774 138 PGCFELTAWSER-GGEMDEIMGIRHRTLPLEGVQFHPES 175 (191)
T ss_pred CCCeEEEEEeCC-CCCcceEEEEEeCCCCEEEEEECCCc
Confidence 899999999864 342 3567788888899999999997
No 23
>PRK00758 GMP synthase subunit A; Validated
Probab=99.93 E-value=5.7e-25 Score=188.22 Aligned_cols=151 Identities=17% Similarity=0.292 Sum_probs=103.4
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccC-CEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHH
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELV-NGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFE 166 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~i-DGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~Q 166 (278)
.+..+++++.|.++.+++++.+.++ ++.. ||||||||++. .+.. .+.++..+.+ +||||||+|||
T Consensus 13 ~~i~~~l~~~g~~~~~~~~~~~~~~----l~~~~dgivi~Gg~~~--~~~~---~~~~~l~~~~-----~PilGIC~G~Q 78 (184)
T PRK00758 13 HLIHRTLRYLGVDAKIIPNTTPVEE----IKAFEDGLILSGGPDI--ERAG---NCPEYLKELD-----VPILGICLGHQ 78 (184)
T ss_pred HHHHHHHHHcCCcEEEEECCCCHHH----HhhcCCEEEECCCCCh--hhcc---ccHHHHHhCC-----CCEEEEeHHHH
Confidence 3577899999999999998765543 3455 99999999853 1111 1222222445 99999999999
Q ss_pred HHHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCCCCcEE
Q 023716 167 LLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKM 246 (278)
Q Consensus 167 lL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~~~~v 246 (278)
+|+.++||+.. .....+.....+..+. .+.+|.+++ +...++.+|++ .+.++|+++++
T Consensus 79 ~L~~a~Gg~v~--~~~~~~~g~~~i~~~~----~~~l~~~~~--------~~~~~~~~H~~--------~v~~l~~~~~~ 136 (184)
T PRK00758 79 LIAKAFGGEVG--RGEYGEYALVEVEILD----EDDILKGLP--------PEIRVWASHAD--------EVKELPDGFEI 136 (184)
T ss_pred HHHHhcCcEEe--cCCCceeeeEEEEEcC----CChhhhCCC--------CCcEEEeehhh--------hhhhCCCCCEE
Confidence 99999999832 1111111112222211 233444433 33456778885 44579999999
Q ss_pred EEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 247 LTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 247 lA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
+|++.+ + .++++++++.|+||+|||||+
T Consensus 137 la~~~~--~--~v~a~~~~~~~~~g~QfHPE~ 164 (184)
T PRK00758 137 LARSDI--C--EVEAMKHKEKPIYGVQFHPEV 164 (184)
T ss_pred EEECCC--C--CEEEEEECCCCEEEEEcCCcc
Confidence 999876 6 699999988899999999996
No 24
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=99.92 E-value=1.9e-24 Score=191.83 Aligned_cols=173 Identities=21% Similarity=0.248 Sum_probs=106.7
Q ss_pred HHHcCCeEEEEeCCCChhhH---HHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHH
Q 023716 94 VESAGARVIPLIYNEPEDVL---FEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTM 170 (278)
Q Consensus 94 le~~Ga~~v~i~~~~~~~~l---~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~ 170 (278)
..+.+.++.++..+.+..+. .+.++.+||||++||++.. .. .....+++++++.+ +|+||||+|||+|++
T Consensus 27 ~~~~~~~v~~~~i~~~~~~~~~~~~~l~~~dgivl~GG~~~~-~~-~~~~~~i~~~~~~~-----~PvlGIClG~Q~l~~ 99 (235)
T cd01746 27 GIALGVKLEIKWIDSEDLEEENAEEALKGADGILVPGGFGIR-GV-EGKILAIKYARENN-----IPFLGICLGMQLAVI 99 (235)
T ss_pred HHHcCCeeEEEEeChhhcCccchhhhhccCCEEEECCCCCCc-ch-hhHHHHHHHHHHCC-----ceEEEEEhHHHHHHH
Confidence 33355666665544332111 3567889999999998742 21 22336788888888 999999999999999
Q ss_pred HHhCccccccccc-c---cccccccc-ee-c-----c----cccC-CcccccCchhHHHhhCCccEEEE-EEeeecCccc
Q 023716 171 IISKDKNILESFN-A---ADQASTLQ-FM-E-----N----TSIE-GTVFQRFPPKLIKKLSTDCLVMQ-NHHYGISPET 233 (278)
Q Consensus 171 ~~Gg~~~il~~~~-~---~~~~~~l~-~~-~-----~----~~~~-~~lf~~~p~~l~~~l~~~~~~~~-~H~~~i~~~~ 233 (278)
++||+..-+..-. . +....++. .. . + .+++ ..+.-.-.+.+.+.++.+....| +||++|+++.
T Consensus 100 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~h~v~i~~~s~l~~~~g~~~~~~n~~H~~~v~~~~ 179 (235)
T cd01746 100 EFARNVLGLPDANSTEFDPDTPHPVVDLMPEQKGVKDLGGTMRLGAYPVILKPGTLAHKYYGKDEVEERHRHRYEVNPEY 179 (235)
T ss_pred HHHHHhcCCccCCccccCCCCCCCEEEECcccccccccCcccccCceEEEECCCChHHHHhCCCEEEEecCcccccCHHH
Confidence 9999731110000 0 00011110 00 0 0 0000 00000011235566776665555 4888998876
Q ss_pred hhhhccCCCCcEEEEEEccCCCCeEEEEEEeCCCcEE-EEeecCCC
Q 023716 234 LRKNLDLSRFFKMLTTSADEDNKVYVSTVQAYDYPVT-AFQWHPEV 278 (278)
Q Consensus 234 ~~~~~~L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~-GvQfHPEk 278 (278)
++. -++++++++|++.| || +||++|++++||+ |||||||.
T Consensus 180 ~~~--~~~~~l~v~a~~~d-dg--~ieaie~~~~pf~lgvQ~HPE~ 220 (235)
T cd01746 180 VDE--LEEAGLRFSGTDPD-GG--LVEIVELPDHPFFVGTQFHPEF 220 (235)
T ss_pred HHH--HhhCCeEEEEEeCC-CC--eEEEEEcCCCCcEEEEECCCCC
Confidence 642 13789999999983 38 9999999999975 99999994
No 25
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=99.92 E-value=8.7e-25 Score=189.06 Aligned_cols=163 Identities=15% Similarity=0.244 Sum_probs=109.8
Q ss_pred chhhhHHHHHHHHHHcCCeEEEEeCCC-ChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEE
Q 023716 82 NASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYA 160 (278)
Q Consensus 82 ~~~yi~~syv~~le~~Ga~~v~i~~~~-~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLG 160 (278)
.+||. .+.+++|++.|..+.++++++ +.+++.. ..+|||||+||+.. |.-.+....+++. ++.+ +||||
T Consensus 8 ~dsft-~nl~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iIlsgGP~~-p~~~~~~~~~i~~-~~~~-----~PvLG 77 (195)
T PRK07649 8 YDSFT-FNLVQFLGELGQELVVKRNDEVTISDIEN--MKPDFLMISPGPCS-PNEAGISMEVIRY-FAGK-----IPIFG 77 (195)
T ss_pred CCccH-HHHHHHHHHCCCcEEEEeCCCCCHHHHhh--CCCCEEEECCCCCC-hHhCCCchHHHHH-hcCC-----CCEEE
Confidence 45664 458899999999999999874 3333332 36899999999973 2211112234442 3345 99999
Q ss_pred EechHHHHHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccC
Q 023716 161 HCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDL 240 (278)
Q Consensus 161 IClG~QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L 240 (278)
||+|||+|+.++||++.-.. ...+.....+.. . +..+|.+++. ...++.+|++.+.+ ..+
T Consensus 78 IClG~Qlla~~lGg~V~~~~-~~~~G~~~~i~~----~-~~~lf~~~~~--------~~~v~~~H~~~v~~------~~l 137 (195)
T PRK07649 78 VCLGHQSIAQVFGGEVVRAE-RLMHGKTSLMHH----D-GKTIFSDIPN--------PFTATRYHSLIVKK------ETL 137 (195)
T ss_pred EcHHHHHHHHHcCCEEeeCC-CcccCCeEEEEE----C-CChhhcCCCC--------CCEEEEechheEec------ccC
Confidence 99999999999999842111 111222211111 1 3445555443 34678889875422 258
Q ss_pred CCCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 241 SRFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 241 ~~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
|++++++|.+.+ + .++++++++.|+||+|||||+
T Consensus 138 p~~~~~~a~s~~--~--~v~a~~~~~~~i~gvQFHPE~ 171 (195)
T PRK07649 138 PDCLEVTSWTEE--G--EIMAIRHKTLPIEGVQFHPES 171 (195)
T ss_pred CCCeEEEEEcCC--C--cEEEEEECCCCEEEEEECCCC
Confidence 899999999865 6 689999999999999999994
No 26
>CHL00101 trpG anthranilate synthase component 2
Probab=99.92 E-value=2.8e-24 Score=185.16 Aligned_cols=162 Identities=16% Similarity=0.233 Sum_probs=108.7
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCC-ChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEE
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~-~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGI 161 (278)
++|. ...++++++.|..+.+++++. +.+.+. ...+||||++||+.. +...+....+++ +++++ +|+|||
T Consensus 9 dsft-~~l~~~l~~~g~~~~v~~~~~~~~~~~~--~~~~dgiiisgGpg~-~~~~~~~~~i~~-~~~~~-----~PiLGI 78 (190)
T CHL00101 9 DSFT-YNLVQSLGELNSDVLVCRNDEIDLSKIK--NLNIRHIIISPGPGH-PRDSGISLDVIS-SYAPY-----IPILGV 78 (190)
T ss_pred CchH-HHHHHHHHhcCCCEEEEECCCCCHHHHh--hCCCCEEEECCCCCC-hHHCcchHHHHH-HhcCC-----CcEEEE
Confidence 4553 458899999999999998764 333222 246999999999973 221122334554 35556 999999
Q ss_pred echHHHHHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCC
Q 023716 162 CLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLS 241 (278)
Q Consensus 162 ClG~QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~ 241 (278)
|+|||+|+.++||++.-.. ...|.....+. + . .+.+|.++| ....++.+|++.+.+ ..+|
T Consensus 79 ClG~Qlla~~~Gg~V~~~~-~~~~g~~~~~~---~-~-~~~l~~~~~--------~~~~v~~~H~~~v~~------~~lp 138 (190)
T CHL00101 79 CLGHQSIGYLFGGKIIKAP-KPMHGKTSKIY---H-N-HDDLFQGLP--------NPFTATRYHSLIIDP------LNLP 138 (190)
T ss_pred chhHHHHHHHhCCEEEECC-CcccCceeeEe---e-C-CcHhhccCC--------CceEEEcchhheeec------ccCC
Confidence 9999999999999842111 11121111110 0 1 233444433 334677889976532 2588
Q ss_pred CCcEEEEEEccCCCCeEEEEEEeCCCc-EEEEeecCCC
Q 023716 242 RFFKMLTTSADEDNKVYVSTVQAYDYP-VTAFQWHPEV 278 (278)
Q Consensus 242 ~~~~vlA~s~D~~g~~~ieaie~~~~p-i~GvQfHPEk 278 (278)
++++++|++.| + .+++++++++| +||+|||||+
T Consensus 139 ~~~~vla~s~~--~--~v~a~~~~~~~~i~gvQfHPE~ 172 (190)
T CHL00101 139 SPLEITAWTED--G--LIMACRHKKYKMLRGIQFHPES 172 (190)
T ss_pred CceEEEEEcCC--C--cEEEEEeCCCCCEEEEEeCCcc
Confidence 99999999866 6 79999999999 9999999996
No 27
>PLN02347 GMP synthetase
Probab=99.91 E-value=6.5e-24 Score=207.82 Aligned_cols=160 Identities=17% Similarity=0.228 Sum_probs=113.2
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCC--CccchHHHHHHHHHHHHhcCCCCCCcEEEEechH
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK--DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~--~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~ 165 (278)
.+.++.+++.|..+.++|++.+.+++.+ ..+||||||||+.. +.........+++.+.+.+ +||||||+||
T Consensus 24 ~~I~r~lrelgv~~~v~p~~~~~~~i~~--~~~dgIILsGGP~sv~~~~~p~~~~~i~~~~~~~~-----iPILGIClG~ 96 (536)
T PLN02347 24 HLITRRVRELGVYSLLLSGTASLDRIAS--LNPRVVILSGGPHSVHVEGAPTVPEGFFDYCRERG-----VPVLGICYGM 96 (536)
T ss_pred HHHHHHHHHCCCeEEEEECCCCHHHHhc--CCCCEEEECCCCCcccccCCchhhHHHHHHHHhcC-----CcEEEECHHH
Confidence 4677899999999999999877665543 26899999999862 1111122346777776667 9999999999
Q ss_pred HHHHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCCCCcE
Q 023716 166 ELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFK 245 (278)
Q Consensus 166 QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~~~~ 245 (278)
|+|+.++||++. .....+.+..++... . ++.+|.+++.. ....++++|++. +..+|++|+
T Consensus 97 QlLa~alGG~V~--~~~~~e~G~~~v~i~---~-~~~Lf~~l~~~------~~~~v~~~Hsd~--------V~~lP~g~~ 156 (536)
T PLN02347 97 QLIVQKLGGEVK--PGEKQEYGRMEIRVV---C-GSQLFGDLPSG------ETQTVWMSHGDE--------AVKLPEGFE 156 (536)
T ss_pred HHHHHHcCCEEE--ecCCcccceEEEEEc---C-CChhhhcCCCC------ceEEEEEEEEEE--------eeeCCCCCE
Confidence 999999999842 111112222222221 1 34566555432 013577888863 456899999
Q ss_pred EEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 246 MLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 246 vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
++|++.| + .++++++++.|+||+|||||+
T Consensus 157 vlA~s~~--~--~iaai~~~~~~i~GvQFHPE~ 185 (536)
T PLN02347 157 VVAKSVQ--G--AVVAIENRERRIYGLQYHPEV 185 (536)
T ss_pred EEEEeCC--C--cEEEEEECCCCEEEEEccCCC
Confidence 9999976 6 589999999999999999996
No 28
>PRK06186 hypothetical protein; Validated
Probab=99.91 E-value=2e-23 Score=183.45 Aligned_cols=192 Identities=16% Similarity=0.101 Sum_probs=117.7
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcC----CeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccch
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAG----ARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYY 136 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~G----a~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~ 136 (278)
..||+++-.. ...++| .|.+++|+.+| .++.+...+++.-+-...|+.+|||++|||......
T Consensus 2 v~IalVGKY~---------~~~daY--~Sv~eal~ha~~~~~~~~~i~wi~s~~l~~~~~l~~~dgilvpgGfg~rg~-- 68 (229)
T PRK06186 2 LRIALVGDYN---------PDVTAH--QAIPLALDLAAAVLGLPVDYEWLPTPEITDPEDLAGFDGIWCVPGSPYRND-- 68 (229)
T ss_pred cEEEEEECCc---------CCcHHH--HHHHHHHHHHHHhcCCeeEEEEEchhhcCChhhHhhCCeeEeCCCCCcccH--
Confidence 3678776542 234666 46788888765 445544444321111136889999999999763221
Q ss_pred HHH-HHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCccccccc-----cccccccccc-cee-cccc-cCCcccccC
Q 023716 137 AIV-EKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILES-----FNAADQASTL-QFM-ENTS-IEGTVFQRF 207 (278)
Q Consensus 137 ~~~-~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~~~il~~-----~~~~~~~~~l-~~~-~~~~-~~~~lf~~~ 207 (278)
+. -..+++|.+++ +|+||||+|||++.+.++.+.-.+++ ++.+.. .++ ... .... .+..+.-.-
T Consensus 69 -~Gki~ai~~Are~~-----iP~LGIClGmQ~avIe~arnv~g~~dA~s~E~~~~~~-~pvi~~~~~~~~~~~h~v~l~~ 141 (229)
T PRK06186 69 -DGALTAIRFARENG-----IPFLGTCGGFQHALLEYARNVLGWADAAHAETDPEGD-RPVIAPLSCSLVEKTGDIRLRP 141 (229)
T ss_pred -hHHHHHHHHHHHcC-----CCeEeechhhHHHHHHHHhhhcCCcCCCcCCCCCCCC-CCEEEECccccccCceEEEECC
Confidence 22 37899999999 99999999999888777665211111 111110 110 000 0000 001111001
Q ss_pred chhHHHhhCCccEEE-EEEeeecCccchhhhccCCCCcEEEEEEccCCCCeEEEEEEeCCCc-EEEEeecCCC
Q 023716 208 PPKLIKKLSTDCLVM-QNHHYGISPETLRKNLDLSRFFKMLTTSADEDNKVYVSTVQAYDYP-VTAFQWHPEV 278 (278)
Q Consensus 208 p~~l~~~l~~~~~~~-~~H~~~i~~~~~~~~~~L~~~~~vlA~s~D~~g~~~ieaie~~~~p-i~GvQfHPEk 278 (278)
.+.+.+.++.+.+.. +.|+|.|++..-|.+. +.+++++|++.| | .||+||.+++| ++|||||||.
T Consensus 142 ~S~l~~iyg~~~i~erhrHryeVNs~h~q~i~--~~GL~vsa~s~D--G--~iEaiE~~~hpf~lGVQwHPE~ 208 (229)
T PRK06186 142 GSLIARAYGTLEIEEGYHCRYGVNPEFVAALE--SGDLRVTGWDED--G--DVRAVELPGHPFFVATLFQPER 208 (229)
T ss_pred CCHHHHHhCCCeeeeeccccEEECHHHHHHHh--cCCeEEEEEcCC--C--CEEEEEeCCCCcEEEEeCCCCc
Confidence 123555666554422 3356778887778875 899999999987 8 79999999988 5999999994
No 29
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.91 E-value=3.4e-23 Score=193.32 Aligned_cols=181 Identities=19% Similarity=0.315 Sum_probs=116.9
Q ss_pred cccCCCCCCCCCCCCCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEE
Q 023716 44 SVLVPRCPVPDSKLNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGV 123 (278)
Q Consensus 44 ~~~~~~~~~~~~~~~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGl 123 (278)
++..++|..+-......+.|-++..- +..+++++|++.|+.++++|++.+.+++.+ ..+|||
T Consensus 151 ~v~~vs~~~~~~~~~~~~~V~viD~G----------------~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~--~~~DGI 212 (354)
T PRK12838 151 VVAQVSTKEPYTYGNGGKHVALIDFG----------------YKKSILRSLSKRGCKVTVLPYDTSLEEIKN--LNPDGI 212 (354)
T ss_pred cccEEEcCCCEEeCCCCCEEEEECCC----------------HHHHHHHHHHHCCCeEEEEECCCCHHHHhh--cCCCEE
Confidence 34566676654433334556665431 246799999999999999999876555543 379999
Q ss_pred EEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCcccccccccccccccccceecccccCCcc
Q 023716 124 LYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTV 203 (278)
Q Consensus 124 Il~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~l 203 (278)
||+||++ +|........+++.++ .+ +||||||+|+|+|+.++||+..-+ .+..+....++... . .+.+
T Consensus 213 iLsgGPg-dp~~~~~~~~~i~~~~-~~-----~PvlGIClG~QlLa~a~Gg~v~kl-~~gh~G~~hpV~~~---~-~~~~ 280 (354)
T PRK12838 213 VLSNGPG-DPKELQPYLPEIKKLI-SS-----YPILGICLGHQLIALALGADTEKL-PFGHRGANHPVIDL---T-TGRV 280 (354)
T ss_pred EEcCCCC-ChHHhHHHHHHHHHHh-cC-----CCEEEECHHHHHHHHHhCCEEecC-CCCccCCceEEEEC---C-CCeE
Confidence 9999997 3432222224444444 23 999999999999999999984211 11111122222110 0 1111
Q ss_pred cccCchhHHHhhCCccEEEEEEeeecCccchhhhccCC-CCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 204 FQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLS-RFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 204 f~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~-~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
..+.++|++++.++ .++ ..+++++++.+ || .||+|+++++|+||||||||.
T Consensus 281 ---------------~~ts~~H~~aV~~~------sl~~~~l~v~a~~~~-Dg--~Veai~~~~~pi~gVQfHPE~ 332 (354)
T PRK12838 281 ---------------WMTSQNHGYVVDED------SLDGTPLSVRFFNVN-DG--SIEGLRHKKKPVLSVQFHPEA 332 (354)
T ss_pred ---------------EEeccchheEeccc------ccCCCCcEEEEEECC-CC--eEEEEEECCCCEEEEEeCCCC
Confidence 13345799887543 244 45899998642 37 899999999999999999995
No 30
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=99.91 E-value=7.8e-24 Score=181.69 Aligned_cols=170 Identities=19% Similarity=0.298 Sum_probs=117.6
Q ss_pred chhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEE
Q 023716 82 NASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (278)
Q Consensus 82 ~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGI 161 (278)
+.+|. .+.++++++.|..+.+++++.+.+...+.++++||+|++||+..... ......+++++++.+ +|+|||
T Consensus 6 ~~~~~-~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~d~iii~Gg~~~~~d-~~~~~~~i~~~~~~~-----~PilGI 78 (192)
T PF00117_consen 6 GDSFT-HSLVRALRELGIDVEVVRVDSDFEEPLEDLDDYDGIIISGGPGSPYD-IEGLIELIREARERK-----IPILGI 78 (192)
T ss_dssp SHTTH-HHHHHHHHHTTEEEEEEETTGGHHHHHHHTTTSSEEEEECESSSTTS-HHHHHHHHHHHHHTT-----SEEEEE
T ss_pred CHHHH-HHHHHHHHHCCCeEEEEECCCchhhhhhhhcCCCEEEECCcCCcccc-ccccccccccccccc-----eEEEEE
Confidence 34553 67999999999999999987654433225889999999999873222 556668899999888 999999
Q ss_pred echHHHHHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCC
Q 023716 162 CLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLS 241 (278)
Q Consensus 162 ClG~QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~ 241 (278)
|+|||+|+.++||+..-......+....++..+. .+.+|.+.| +...++.+|++.+.+. ..+|
T Consensus 79 C~G~Q~la~~~G~~v~~~~~~~~~g~~~~~~~~~----~~~~~~~~~--------~~~~~~~~H~~~v~~~-----~~~p 141 (192)
T PF00117_consen 79 CLGHQILAHALGGKVVPSPEKPHHGGNIPISETP----EDPLFYGLP--------ESFKAYQYHSDAVNPD-----DLLP 141 (192)
T ss_dssp THHHHHHHHHTTHEEEEEESEEEEEEEEEEEEEE----EHGGGTTST--------SEEEEEEEECEEEEEG-----HHHH
T ss_pred eehhhhhHHhcCCccccccccccccccccccccc----ccccccccc--------cccccccccceeeecc-----cccc
Confidence 9999999999999832111011111111111110 113333333 3346788899866432 1278
Q ss_pred CCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 242 RFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 242 ~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
++++++|++.+ +. .++++.+.+.|+||+|||||+
T Consensus 142 ~~~~~la~s~~--~~-~~~~~~~~~~~i~g~QfHPE~ 175 (192)
T PF00117_consen 142 EGFEVLASSSD--GC-PIQAIRHKDNPIYGVQFHPEF 175 (192)
T ss_dssp TTEEEEEEETT--TT-EEEEEEECTTSEEEESSBTTS
T ss_pred ccccccccccc--cc-ccccccccccEEEEEecCCcC
Confidence 99999999965 32 578888888899999999995
No 31
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.90 E-value=1.4e-23 Score=179.83 Aligned_cols=160 Identities=16% Similarity=0.216 Sum_probs=112.6
Q ss_pred HHHHHHHHHHcC---CeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCC----ccchHHHHHHHHHHHHhcCCCCCCcEE
Q 023716 87 AASYVKFVESAG---ARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKD----GLYYAIVEKVFKKILEKNDAGDHFPLY 159 (278)
Q Consensus 87 ~~syv~~le~~G---a~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~----p~~~~~~~~li~~al~~~~~g~~~PVL 159 (278)
...|.++++++| .++.++++..... ...++.+|||||+||+... ..|.....++++++++++ +|+|
T Consensus 13 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~--~~~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~-----~pil 85 (188)
T cd01741 13 PGLFEDLLREAGAETIEIDVVDVYAGEL--LPDLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAG-----KPVL 85 (188)
T ss_pred cchHHHHHHhcCCCCceEEEEecCCCCC--CCCcccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHCC-----CCEE
Confidence 356889999999 5788777665432 3347899999999997632 233445568889898888 9999
Q ss_pred EEechHHHHHHHHhCcccccccccc-cccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhc
Q 023716 160 AHCLGFELLTMIISKDKNILESFNA-ADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNL 238 (278)
Q Consensus 160 GIClG~QlL~~~~Gg~~~il~~~~~-~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~ 238 (278)
|||+|+|+|+.++||+.. ..... +....++.++.+.. ...+|++++ +...++++|++ .+.
T Consensus 86 giC~G~q~l~~~lGG~v~--~~~~~~~~g~~~v~~~~~~~-~~~l~~~~~--------~~~~v~~~H~~--------~v~ 146 (188)
T cd01741 86 GICLGHQLLARALGGKVG--RNPKGWEIGWFPVTLTEAGK-ADPLFAGLP--------DEFPVFHWHGD--------TVV 146 (188)
T ss_pred EECccHHHHHHHhCCEEe--cCCCcceeEEEEEEeccccc-cCchhhcCC--------CcceEEEEecc--------Chh
Confidence 999999999999999832 22111 33344444433211 233443333 33356777885 445
Q ss_pred cCCCCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCC
Q 023716 239 DLSRFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPE 277 (278)
Q Consensus 239 ~L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPE 277 (278)
.+|++++++|++.+ + .+++++.. .++||+|||||
T Consensus 147 ~lp~~~~~la~~~~--~--~v~~~~~~-~~~~g~QfHPE 180 (188)
T cd01741 147 ELPPGAVLLASSEA--C--PNQAFRYG-DRALGLQFHPE 180 (188)
T ss_pred hCCCCCEEeecCCC--C--CcceEEec-CCEEEEccCch
Confidence 68999999999876 5 58899865 68999999999
No 32
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=99.90 E-value=3.5e-23 Score=194.60 Aligned_cols=152 Identities=20% Similarity=0.333 Sum_probs=106.1
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHH
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFEL 167 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~Ql 167 (278)
.+.+++|++.|++++++|++.+.+++.. .++|||||+||+. +|.........++++++.+ +||||||+|+|+
T Consensus 204 ~ni~~~L~~~G~~v~vvp~~~~~~~i~~--~~~dgIilSgGPg-~p~~~~~~i~~i~~~~~~~-----~PilGIClGhQl 275 (382)
T CHL00197 204 YNILRRLKSFGCSITVVPATSPYQDILS--YQPDGILLSNGPG-DPSAIHYGIKTVKKLLKYN-----IPIFGICMGHQI 275 (382)
T ss_pred HHHHHHHHHCCCeEEEEcCCCCHHHHhc--cCCCEEEEcCCCC-ChhHHHHHHHHHHHHHhCC-----CCEEEEcHHHHH
Confidence 3588999999999999999887665543 2699999999987 3443333335566666666 999999999999
Q ss_pred HHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCC-CCcEE
Q 023716 168 LTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLS-RFFKM 246 (278)
Q Consensus 168 L~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~-~~~~v 246 (278)
|+.++||+...+ .+..+....++. .+. .-.++.++|.+.+.++. ++ ..+++
T Consensus 276 La~a~Gg~v~k~-~~Gh~g~n~pv~--------------~~~-------~v~itsq~H~~~v~~~s------v~~~~~~v 327 (382)
T CHL00197 276 LSLALEAKTFKL-KFGHRGLNHPSG--------------LNQ-------QVEITSQNHGFAVNLES------LAKNKFYI 327 (382)
T ss_pred HHHHhCCEEecc-CCCCCCCCEecC--------------CCC-------ceEEeecchheEeeccc------cCCCCcEE
Confidence 999999984221 111111011110 011 01134567998886543 33 36889
Q ss_pred EEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 247 LTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 247 lA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
++++.+ || .+|+|+++++|+||||||||+
T Consensus 328 t~~~~n-Dg--tvegi~h~~~pi~gVQFHPE~ 356 (382)
T CHL00197 328 THFNLN-DG--TVAGISHSPKPYFSVQYHPEA 356 (382)
T ss_pred EEEECC-CC--CEEEEEECCCCcEEEeeCCCC
Confidence 988743 37 689999999999999999995
No 33
>PRK13566 anthranilate synthase; Provisional
Probab=99.90 E-value=3.8e-23 Score=208.26 Aligned_cols=175 Identities=19% Similarity=0.322 Sum_probs=125.0
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchH
Q 023716 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYA 137 (278)
Q Consensus 58 ~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~ 137 (278)
...+.|.|..+. .++ ...+.+++++.|+++.+++++.+.+.+. ..++|||||+||+.. +..+
T Consensus 524 ~~g~~IlvID~~-------------dsf-~~~l~~~Lr~~G~~v~vv~~~~~~~~~~--~~~~DgVVLsgGpgs-p~d~- 585 (720)
T PRK13566 524 GEGKRVLLVDHE-------------DSF-VHTLANYFRQTGAEVTTVRYGFAEEMLD--RVNPDLVVLSPGPGR-PSDF- 585 (720)
T ss_pred CCCCEEEEEECC-------------Cch-HHHHHHHHHHCCCEEEEEECCCChhHhh--hcCCCEEEECCCCCC-hhhC-
Confidence 334567777653 222 3578899999999999999987655443 247999999999873 3222
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCC
Q 023716 138 IVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLST 217 (278)
Q Consensus 138 ~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~ 217 (278)
....+++++++++ +||||||+|||+|+.++||+..... ...|....++..+. .+.+|+++|+
T Consensus 586 ~~~~lI~~a~~~~-----iPILGIClG~QlLa~alGG~V~~~~-~~~~G~~~~V~v~~----~~~Lf~~lp~-------- 647 (720)
T PRK13566 586 DCKATIDAALARN-----LPIFGVCLGLQAIVEAFGGELGQLA-YPMHGKPSRIRVRG----PGRLFSGLPE-------- 647 (720)
T ss_pred CcHHHHHHHHHCC-----CcEEEEehhHHHHHHHcCCEEEECC-CCccCCceEEEECC----CCchhhcCCC--------
Confidence 2458899999888 9999999999999999999842211 11122222332221 3455555443
Q ss_pred ccEEEEEEeeecCccchhhhccCCCCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 218 DCLVMQNHHYGISPETLRKNLDLSRFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 218 ~~~~~~~H~~~i~~~~~~~~~~L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
...++++|++.+. ...+|++++++|++.| | +|++|+++++|+||||||||+
T Consensus 648 ~~~v~~~Hs~~v~------~~~Lp~~~~vlA~s~d--g--~V~ai~~~~~pi~GVQFHPE~ 698 (720)
T PRK13566 648 EFTVGRYHSLFAD------PETLPDELLVTAETED--G--VIMAIEHKTLPVAAVQFHPES 698 (720)
T ss_pred CCEEEEecceeEe------eccCCCceEEEEEeCC--C--cEEEEEECCCCEEEEeccCee
Confidence 3467788887442 2358999999999976 7 899999999999999999996
No 34
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.90 E-value=5.2e-23 Score=201.24 Aligned_cols=154 Identities=17% Similarity=0.255 Sum_probs=108.7
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCC--CccchHHHHHHHHHHHHhcCCCCCCcEEEEechH
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK--DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~--~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~ 165 (278)
..+.+.|+++|+.+.++|++.+.+++.+. ++||||||||+.. +.... .+.+.+++.+ +||||||+||
T Consensus 17 ~li~r~lrelg~~~~v~p~~~~~~~l~~~--~~dgIIlsGGp~sv~~~~~p----~~~~~i~~~~-----~PvLGIC~G~ 85 (511)
T PRK00074 17 QLIARRVRELGVYSEIVPYDISAEEIRAF--NPKGIILSGGPASVYEEGAP----RADPEIFELG-----VPVLGICYGM 85 (511)
T ss_pred HHHHHHHHHCCCeEEEEECCCCHHHHhcc--CCCEEEECCCCcccccCCCc----cccHHHHhCC-----CCEEEECHHH
Confidence 46789999999999999998776665432 5799999999862 11111 2334455667 9999999999
Q ss_pred HHHHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCCCCcE
Q 023716 166 ELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFK 245 (278)
Q Consensus 166 QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~~~~ 245 (278)
|+|+.++||+.. .....+.+...+..+. .+.+|.++ ++...++.+|++ .+.++|++|+
T Consensus 86 QlLa~~lGG~V~--~~~~~e~G~~~i~i~~----~~~Lf~~l--------~~~~~v~~~H~d--------~V~~lp~g~~ 143 (511)
T PRK00074 86 QLMAHQLGGKVE--RAGKREYGRAELEVDN----DSPLFKGL--------PEEQDVWMSHGD--------KVTELPEGFK 143 (511)
T ss_pred HHHHHHhCCeEE--ecCCcccceEEEEEcC----CChhhhcC--------CCceEEEEECCe--------EEEecCCCcE
Confidence 999999999832 1111222222222211 23455443 333467778885 4567999999
Q ss_pred EEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 246 MLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 246 vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
++|++.+ + .++++++.+.++||+|||||+
T Consensus 144 vlA~s~~--~--~v~ai~~~~~~i~GvQFHPE~ 172 (511)
T PRK00074 144 VIASTEN--C--PIAAIANEERKFYGVQFHPEV 172 (511)
T ss_pred EEEEeCC--C--CEEEEEeCCCCEEEEeCCCCc
Confidence 9999975 5 789999988999999999996
No 35
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=99.89 E-value=1.4e-22 Score=191.39 Aligned_cols=154 Identities=19% Similarity=0.328 Sum_probs=108.1
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHH
Q 023716 87 AASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFE 166 (278)
Q Consensus 87 ~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~Q 166 (278)
..+.++.|.+.|+.++++|++.+.+++.. ..+|||+|+||+. +|..+....+.+++++ .+ +||||||+|+|
T Consensus 251 K~nIlr~L~~~G~~v~VvP~~~~~~ei~~--~~pDGIiLSnGPG-DP~~~~~~ie~ik~l~-~~-----iPIlGICLGhQ 321 (415)
T PLN02771 251 KHNILRRLASYGCKITVVPSTWPASEALK--MKPDGVLFSNGPG-DPSAVPYAVETVKELL-GK-----VPVFGICMGHQ 321 (415)
T ss_pred HHHHHHHHHHcCCeEEEECCCCCHHHHhh--cCCCEEEEcCCCC-ChhHhhHHHHHHHHHH-hC-----CCEEEEcHHHH
Confidence 35788999999999999999877655442 3689999999987 4443333344555544 35 99999999999
Q ss_pred HHHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCCCCcEE
Q 023716 167 LLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKM 246 (278)
Q Consensus 167 lL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~~~~v 246 (278)
+|+.++||++.-+ .+..+....++... . .+. -.++.++|+|.|.++ .||+++++
T Consensus 322 lLa~AlGGkv~K~-~~Gh~G~n~pV~~~---~-~~~---------------v~itsqnHg~aVd~~------sLp~~~~v 375 (415)
T PLN02771 322 LLGQALGGKTFKM-KFGHHGGNHPVRNN---R-TGR---------------VEISAQNHNYAVDPA------SLPEGVEV 375 (415)
T ss_pred HHHHhcCCeEEEC-CCCcccceEEEEEC---C-CCC---------------EEEEecCHHHhhccc------cCCCceEE
Confidence 9999999984211 12112222222110 0 011 114567899877543 57889999
Q ss_pred EEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 247 LTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 247 lA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
++++.+ || .+|+++++++|++|||||||.
T Consensus 376 t~~nln-Dg--tvegi~~~~~pi~gVQFHPEa 404 (415)
T PLN02771 376 THVNLN-DG--SCAGLAFPALNVMSLQYHPEA 404 (415)
T ss_pred EEEeCC-CC--cEEEEEECCCCEEEEEcCCCC
Confidence 998742 37 799999999999999999994
No 36
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=99.89 E-value=5.4e-22 Score=191.69 Aligned_cols=195 Identities=24% Similarity=0.335 Sum_probs=126.3
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCC----eEEEEeCCCChhhHH---HhcccCCEEEEcCCCCC
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGA----RVIPLIYNEPEDVLF---EKLELVNGVLYTGGWAK 131 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga----~~v~i~~~~~~~~l~---~~l~~iDGlIl~GG~~~ 131 (278)
.++.||+++.... ..++| .|++++|+.+|+ ++.+.+.+. ++... +.|+++|||+||||+..
T Consensus 288 ~~v~IalVGKY~~---------~~daY--~SI~eAL~~ag~~~~~~V~~~~i~s-e~i~~~~~~~L~~~dGIiLpGG~G~ 355 (525)
T TIGR00337 288 HEVTIGIVGKYVE---------LKDSY--LSVIEALKHAGAKLDTKVNIKWIDS-EDLEEEGAEFLKGVDGILVPGGFGE 355 (525)
T ss_pred CCcEEEEEeCCcC---------CHHHH--HHHHHHHHhCccccCCEEEEEEecH-HHhhhhhhhhhcCCCEEEeCCCCCC
Confidence 4689999987532 34677 489999999986 344444332 22111 24788999999999863
Q ss_pred CccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCcc-ccc----cccccccccccc-ceecc----cccCC
Q 023716 132 DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDK-NIL----ESFNAADQASTL-QFMEN----TSIEG 201 (278)
Q Consensus 132 ~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~~-~il----~~~~~~~~~~~l-~~~~~----~~~~~ 201 (278)
+.. ...-..++++.+++ +|+||||+|||+|++++|+++ .+. .+++.. ...++ .+.++ ...++
T Consensus 356 -~~~-~g~i~ai~~a~e~~-----iP~LGIClG~Qll~i~~grnv~gl~~A~s~Ef~~~-~~~pVi~l~~~~~~~~~~GG 427 (525)
T TIGR00337 356 -RGV-EGKILAIKYARENN-----IPFLGICLGMQLAVIEFARNVLGLKGANSTEFDPE-TKYPVVDLLPEQKDISDLGG 427 (525)
T ss_pred -hhh-cChHHHHHHHHHcC-----CCEEEEcHHHHHHHHHHHHHhcCCCCCCccccCCC-CCCCeeeccCcccccccCCc
Confidence 221 11225778888888 999999999999999999972 111 111111 11111 11111 11134
Q ss_pred ccccc------Cc-hhHHHhhCCccE-EEEEEeeecCccchhhhccCCCCcEEEEEEccCCCCeEEEEEEeCCCcE-EEE
Q 023716 202 TVFQR------FP-PKLIKKLSTDCL-VMQNHHYGISPETLRKNLDLSRFFKMLTTSADEDNKVYVSTVQAYDYPV-TAF 272 (278)
Q Consensus 202 ~lf~~------~p-~~l~~~l~~~~~-~~~~H~~~i~~~~~~~~~~L~~~~~vlA~s~D~~g~~~ieaie~~~~pi-~Gv 272 (278)
+|.-+ .+ +.+.+.++...+ .-++|+|.+++...|++.. .+++++|++.| +| +||+||.+++|+ +||
T Consensus 428 TmRLG~h~v~i~~gS~L~~iyG~~~i~erhrHry~VNs~h~q~l~~--~GL~vsa~s~D-gg--~VEaIE~~~hpfflGV 502 (525)
T TIGR00337 428 TMRLGLYPCILKPGTLAFKLYGKEEVYERHRHRYEVNNEYREQLEN--KGLIVSGTSPD-GR--LVEIIELPDHPFFVAC 502 (525)
T ss_pred eeeccceEEEECCCChHHHHhCCCceeecccceEEECHHHHHhhhh--CCeEEEEEECC-CC--EEEEEEECCCCeEEEE
Confidence 43211 12 335566666543 3456888898888777654 88999999976 24 899999999996 699
Q ss_pred eecCCC
Q 023716 273 QWHPEV 278 (278)
Q Consensus 273 QfHPEk 278 (278)
|||||.
T Consensus 503 QwHPE~ 508 (525)
T TIGR00337 503 QFHPEF 508 (525)
T ss_pred ecCCCC
Confidence 999994
No 37
>PRK09065 glutamine amidotransferase; Provisional
Probab=99.89 E-value=2.3e-22 Score=178.94 Aligned_cols=157 Identities=18% Similarity=0.218 Sum_probs=104.1
Q ss_pred HHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCC---CccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHH
Q 023716 92 KFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK---DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELL 168 (278)
Q Consensus 92 ~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~---~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL 168 (278)
+.+...|.....+...... .++ .++.+|||||+||+.. +..|....+++++.+++.+ +||||||+|+|+|
T Consensus 29 ~~~~~~~~~~~~~~~~~~~-~~p-~~~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~-----~PvlGIC~G~Qll 101 (237)
T PRK09065 29 VALGLAEQPVVVVRVFAGE-PLP-APDDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAG-----MPLLGICYGHQLL 101 (237)
T ss_pred HHhccCCceEEEEeccCCC-CCC-ChhhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCC-----CCEEEEChhHHHH
Confidence 3444567777666554322 122 3567999999999873 2233445568889998888 9999999999999
Q ss_pred HHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCCCCcEEEE
Q 023716 169 TMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKMLT 248 (278)
Q Consensus 169 ~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~~~~vlA 248 (278)
+.++||++... ....+....++.++.+.. ...+|.+++ +...++.+|++ .+..||++++++|
T Consensus 102 a~alGg~V~~~-~~g~e~G~~~v~~~~~~~-~~~l~~~~~--------~~~~v~~~H~d--------~v~~lp~~~~~la 163 (237)
T PRK09065 102 AHALGGEVGYN-PAGRESGTVTVELHPAAA-DDPLFAGLP--------AQFPAHLTHLQ--------SVLRLPPGAVVLA 163 (237)
T ss_pred HHHcCCccccC-CCCCccceEEEEEccccc-cChhhhcCC--------ccCcEeeehhh--------hhhhCCCCCEEEE
Confidence 99999984211 111222333343332211 233554443 33345667774 4567999999999
Q ss_pred EEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 249 TSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 249 ~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
++.+ + .+++++..+ ++||+|||||.
T Consensus 164 ~s~~--~--~iqa~~~~~-~i~gvQfHPE~ 188 (237)
T PRK09065 164 RSAQ--D--PHQAFRYGP-HAWGVQFHPEF 188 (237)
T ss_pred cCCC--C--CeeEEEeCC-CEEEEEeCCcC
Confidence 9875 5 489998754 69999999995
No 38
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.88 E-value=2.2e-22 Score=197.81 Aligned_cols=163 Identities=13% Similarity=0.230 Sum_probs=110.2
Q ss_pred CchhhhHHHHHHHHHHcCCe-EEEE-eCCCChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcE
Q 023716 81 TNASYIAASYVKFVESAGAR-VIPL-IYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPL 158 (278)
Q Consensus 81 ~~~~yi~~syv~~le~~Ga~-~v~i-~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PV 158 (278)
+++||. .+.++.|++.|.. +.++ |++.+.+++.. ...|||||+||+.. |...+...++++. ++.+ +||
T Consensus 7 n~dsft-~nl~~~l~~~g~~~v~~~~~~~~~~~~~~~--~~~d~vIlsgGP~~-p~~~~~~~~li~~-~~~~-----~Pv 76 (534)
T PRK14607 7 NYDSFT-YNIYQYIGELGPEEIEVVRNDEITIEEIEA--LNPSHIVISPGPGR-PEEAGISVEVIRH-FSGK-----VPI 76 (534)
T ss_pred CchhHH-HHHHHHHHHcCCCeEEEECCCCCCHHHHHh--cCCCEEEECCCCCC-hhhCCccHHHHHH-hhcC-----CCE
Confidence 346665 4688999999996 4444 55444444422 25899999999983 3222223356654 3556 999
Q ss_pred EEEechHHHHHHHHhCccccccccc-ccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhh
Q 023716 159 YAHCLGFELLTMIISKDKNILESFN-AADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKN 237 (278)
Q Consensus 159 LGIClG~QlL~~~~Gg~~~il~~~~-~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~ 237 (278)
||||+|||+|+.++||+.. .... .+....++.. . .+.+|.++++ ...++++|++++..
T Consensus 77 LGIClG~QlLa~a~Gg~V~--~~~~~~~G~~~~v~~----~-~~~lf~~~~~--------~~~v~~~Hs~~v~~------ 135 (534)
T PRK14607 77 LGVCLGHQAIGYAFGGKIV--HAKRILHGKTSPIDH----N-GKGLFRGIPN--------PTVATRYHSLVVEE------ 135 (534)
T ss_pred EEEcHHHHHHHHHcCCeEe--cCCccccCCceeEEE----C-CCcchhcCCC--------CcEEeeccchheec------
Confidence 9999999999999999832 2111 1222222211 1 3456655544 23577889876521
Q ss_pred ccCCCCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 238 LDLSRFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 238 ~~L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
..+|++++++|++.| + .|++++++++|+||||||||+
T Consensus 136 ~~lp~~~~vlA~s~d--~--~i~a~~~~~~pi~GvQFHPE~ 172 (534)
T PRK14607 136 ASLPECLEVTAKSDD--G--EIMGIRHKEHPIFGVQFHPES 172 (534)
T ss_pred ccCCCCeEEEEEcCC--C--CEEEEEECCCCEEEEEeCCCC
Confidence 358999999999976 6 699999999999999999995
No 39
>PRK07567 glutamine amidotransferase; Provisional
Probab=99.88 E-value=4.8e-22 Score=177.38 Aligned_cols=161 Identities=19% Similarity=0.253 Sum_probs=103.8
Q ss_pred HHHHHHHHHcCCe---EEEEeCCCChhhHHHhcccCCEEEEcCCCCC--C-----ccchHHH----HHHHHHHHHhcCCC
Q 023716 88 ASYVKFVESAGAR---VIPLIYNEPEDVLFEKLELVNGVLYTGGWAK--D-----GLYYAIV----EKVFKKILEKNDAG 153 (278)
Q Consensus 88 ~syv~~le~~Ga~---~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~--~-----p~~~~~~----~~li~~al~~~~~g 153 (278)
..|.+++++.|.. +..+....... ....++.+||||++||+.. + ..|.... +.+++.+++++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~--- 93 (242)
T PRK07567 18 AEYAAFLRYTGLDPAELRRIRLDREPL-PDLDLDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARD--- 93 (242)
T ss_pred chHHHHHHhcCCCccceEEEecccCCC-CCCCHhhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcC---
Confidence 5688899988865 44444333211 1113677999999999852 1 1222222 24556666777
Q ss_pred CCCcEEEEechHHHHHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccc
Q 023716 154 DHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPET 233 (278)
Q Consensus 154 ~~~PVLGIClG~QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~ 233 (278)
+||||||+|+|+|+.++||++. .....+....++.++.... .+.+|..++. ...++.+|+
T Consensus 94 --~PvLGIC~G~Qlla~a~GG~V~--~~~g~e~G~~~v~l~~~g~-~~~l~~~~~~--------~~~~~~~H~------- 153 (242)
T PRK07567 94 --FPFLGACYGVGTLGHHQGGVVD--RTYGEPVGAVTVSLTDAGR-ADPLLAGLPD--------TFTAFVGHK------- 153 (242)
T ss_pred --CCEEEEchhHHHHHHHcCCEEe--cCCCCcCccEEEEECCccC-CChhhcCCCC--------ceEEEeehh-------
Confidence 9999999999999999999842 2211222333333332211 2345544433 335667787
Q ss_pred hhhhccCCCCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 234 LRKNLDLSRFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 234 ~~~~~~L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
+.+..||++++++|++.+ + .+++++.. .++||+|||||.
T Consensus 154 -d~V~~lp~~~~vlA~s~~--~--~vqa~~~~-~~~~gvQfHPE~ 192 (242)
T PRK07567 154 -EAVSALPPGAVLLATSPT--C--PVQMFRVG-ENVYATQFHPEL 192 (242)
T ss_pred -hhhhhCCCCCEEEEeCCC--C--CEEEEEeC-CCEEEEEeCCcC
Confidence 556679999999999965 5 58999864 469999999995
No 40
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=99.88 E-value=7.2e-22 Score=198.82 Aligned_cols=177 Identities=20% Similarity=0.301 Sum_probs=122.5
Q ss_pred CCCCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccc
Q 023716 56 KLNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLY 135 (278)
Q Consensus 56 ~~~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~ 135 (278)
..+..+.|.|+.+- .++ ..++.++|++.|+.+.+++++...+ +.+ ...+|||||+||++. +.-
T Consensus 512 ~~~~~~~IlVID~g-------------ds~-~~~l~~~L~~~G~~v~vv~~~~~~~-~~~-~~~~DgLILsgGPGs-p~d 574 (717)
T TIGR01815 512 RGGEGRRILLVDHE-------------DSF-VHTLANYLRQTGASVTTLRHSHAEA-AFD-ERRPDLVVLSPGPGR-PAD 574 (717)
T ss_pred CCCCCCEEEEEECC-------------Chh-HHHHHHHHHHCCCeEEEEECCCChh-hhh-hcCCCEEEEcCCCCC-chh
Confidence 33455688888643 223 3578899999999999998765433 222 246999999999873 221
Q ss_pred hHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhh
Q 023716 136 YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKL 215 (278)
Q Consensus 136 ~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l 215 (278)
. ....+++++++.+ +||||||+|||+|+.++||+..... ...+....++... . .+.+|.+ +
T Consensus 575 ~-~~~~~I~~~~~~~-----iPvLGICLG~QlLa~a~GG~V~~~~-~p~~G~~~~V~~~---~-~~~Lf~~--------l 635 (717)
T TIGR01815 575 F-DVAGTIDAALARG-----LPVFGVCLGLQGMVEAFGGALDVLP-EPVHGKASRIRVL---G-PDALFAG--------L 635 (717)
T ss_pred c-ccHHHHHHHHHCC-----CCEEEECHHHHHHhhhhCCEEEECC-CCeeCcceEEEEC---C-CChhhhc--------C
Confidence 1 2246788888888 9999999999999999999842211 1112212222211 1 2334444 3
Q ss_pred CCccEEEEEEeeecCccchhhhccCCCCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 216 STDCLVMQNHHYGISPETLRKNLDLSRFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 216 ~~~~~~~~~H~~~i~~~~~~~~~~L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
+....++++|++.+. ...+|++++++|++.| + .+++|++++.|+||||||||+
T Consensus 636 p~~~~v~~~HS~~~~------~~~LP~~~~vlA~s~d--~--~v~Ai~~~~~~i~GVQFHPEs 688 (717)
T TIGR01815 636 PERLTVGRYHSLFAR------RDRLPAELTVTAESAD--G--LIMAIEHRRLPLAAVQFHPES 688 (717)
T ss_pred CCCCEEEEECCCCcc------cccCCCCeEEEEEeCC--C--cEEEEEECCCCEEEEEeCCee
Confidence 444578889998542 2358999999999976 7 799999999999999999996
No 41
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.88 E-value=3.5e-22 Score=172.85 Aligned_cols=159 Identities=18% Similarity=0.236 Sum_probs=109.6
Q ss_pred HHHHHHHHHcC-CeEEEEeCCCChhhHHHhcccCCEEEEcCCCCC--Cc-cchHHHHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 88 ASYVKFVESAG-ARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK--DG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 88 ~syv~~le~~G-a~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~--~p-~~~~~~~~li~~al~~~~~g~~~PVLGICl 163 (278)
.-+-++++..| ....+.+++.+.+.++ ....||+||+||+.. ++ .|......++..+...+ +||||||+
T Consensus 15 ~li~r~~re~g~v~~e~~~~~~~~~~~~--~~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~-----~pvLGIC~ 87 (198)
T COG0518 15 GLIARRLRELGYVYSEIVPYTGDAEELP--LDSPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPG-----KPVLGICL 87 (198)
T ss_pred HHHHHHHHHcCCceEEEEeCCCCccccc--ccCCCEEEEcCCCCCCccccccchhHHHHHHHhCCCC-----CCEEEECh
Confidence 34668999999 6777778887765443 345699999999962 11 23334445555555555 78999999
Q ss_pred hHHHHHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCCCC
Q 023716 164 GFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRF 243 (278)
Q Consensus 164 G~QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~~ 243 (278)
|||+|+.++||++.- ....+....++..+. . .+.+|+++|.... .++.+|. +.+.+||++
T Consensus 88 G~Ql~A~~lGg~V~~--~~~~E~G~~~v~~~~--~-~~~l~~gl~~~~~-------~v~~sH~--------D~v~~lP~g 147 (198)
T COG0518 88 GHQLLAKALGGKVER--GPKREIGWTPVELTE--G-DDPLFAGLPDLFT-------TVFMSHG--------DTVVELPEG 147 (198)
T ss_pred hHHHHHHHhCCEEec--cCCCccceEEEEEec--C-ccccccCCccccC-------ccccchh--------CccccCCCC
Confidence 999999999998422 111344444554432 1 2356666554320 3667787 677889999
Q ss_pred cEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 244 FKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 244 ~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
|+++|.|.. . -+++++.. .++||+|||||.
T Consensus 148 ~~vlA~s~~--c--p~qa~~~~-~~~~gvQFHpEv 177 (198)
T COG0518 148 AVVLASSET--C--PNQAFRYG-KRAYGVQFHPEV 177 (198)
T ss_pred CEEEecCCC--C--hhhheecC-CcEEEEeeeeEE
Confidence 999999864 3 47889876 789999999994
No 42
>PRK06490 glutamine amidotransferase; Provisional
Probab=99.87 E-value=5.7e-21 Score=170.13 Aligned_cols=157 Identities=19% Similarity=0.158 Sum_probs=104.7
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCC---CccchHHHHHHHHHHHHhcCCCCCCcEEEEech
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK---DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~---~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG 164 (278)
..+.++++..|..+.++...... .+++.++++||+||+||+.. +..|.....++++.+++.+ +|+||||+|
T Consensus 22 g~l~~~l~~~g~~~~v~~~~~~~-~~p~~l~~~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~~~~~-----~PvLGIC~G 95 (239)
T PRK06490 22 GRVGQLLQERGYPLDIRRPRLGD-PLPDTLEDHAGAVIFGGPMSANDPDDFIRREIDWISVPLKEN-----KPFLGICLG 95 (239)
T ss_pred hHHHHHHHHCCCceEEEeccCCC-CCCCcccccCEEEEECCCCCCCCCchHHHHHHHHHHHHHHCC-----CCEEEECHh
Confidence 45788999999998877543222 22334678999999999862 2234444567888888888 999999999
Q ss_pred HHHHHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCCCCc
Q 023716 165 FELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFF 244 (278)
Q Consensus 165 ~QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~~~ 244 (278)
+|+|+.++||++.-...-..+.+..++.++. .+..+..++ ..++++|++ . ..||+++
T Consensus 96 ~Qlla~alGG~V~~~~~G~~e~G~~~i~~~~----~~~~~~~~~----------~~~~~~H~d--------~-~~lP~~~ 152 (239)
T PRK06490 96 AQMLARHLGARVAPHPDGRVEIGYYPLRPTE----AGRALMHWP----------EMVYHWHRE--------G-FDLPAGA 152 (239)
T ss_pred HHHHHHHcCCEeecCCCCCCccceEEeEECC----CcccccCCC----------CEEEEECCc--------c-ccCCCCC
Confidence 9999999999842111000111222222221 122221111 235667774 3 4699999
Q ss_pred EEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 245 KMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 245 ~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
+++|++.+ + -+++++.. .++||+|||||+
T Consensus 153 ~~LA~s~~--~--~~qa~~~~-~~v~g~QfHPE~ 181 (239)
T PRK06490 153 ELLATGDD--F--PNQAFRYG-DNAWGLQFHPEV 181 (239)
T ss_pred EEEEeCCC--C--CeEEEEeC-CCEEEEeeCccC
Confidence 99999965 5 57899874 479999999995
No 43
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.87 E-value=1.8e-21 Score=177.98 Aligned_cols=154 Identities=19% Similarity=0.380 Sum_probs=113.4
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHH
Q 023716 87 AASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFE 166 (278)
Q Consensus 87 ~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~Q 166 (278)
..+.++.|.+.|++++++|++.+.+++.++ ..|||+|+-|+. +|...+.....++..++.. +|+||||+|+|
T Consensus 190 K~nIlr~L~~rg~~vtVVP~~t~~eeIl~~--~pDGiflSNGPG-DP~~~~~~i~~ik~l~~~~-----iPifGICLGHQ 261 (368)
T COG0505 190 KRNILRELVKRGCRVTVVPADTSAEEILAL--NPDGIFLSNGPG-DPAPLDYAIETIKELLGTK-----IPIFGICLGHQ 261 (368)
T ss_pred cHHHHHHHHHCCCeEEEEcCCCCHHHHHhh--CCCEEEEeCCCC-ChhHHHHHHHHHHHHhccC-----CCeEEEcHHHH
Confidence 457889999999999999999888766543 789999999998 6665555567778788777 89999999999
Q ss_pred HHHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCCCCcEE
Q 023716 167 LLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKM 246 (278)
Q Consensus 167 lL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~~~~v 246 (278)
+|+.|+|++.-- -.|..+....|+. +.. .+ .-.++.+||.|+|.++ ++.+..++
T Consensus 262 llalA~Ga~T~K-mkFGHrG~NhPV~---dl~-tg---------------rv~ITSQNHGyaVd~~------s~~~~~~v 315 (368)
T COG0505 262 LLALALGAKTYK-MKFGHRGANHPVK---DLD-TG---------------RVYITSQNHGYAVDED------SLVETLKV 315 (368)
T ss_pred HHHHhcCCceee-cccCCCCCCcCcc---ccc-CC---------------eEEEEecCCceecChh------hcCCCcee
Confidence 999999998321 1232222222221 000 11 1226778999998776 34443377
Q ss_pred EEEEccCCCCeEEEEEEeCCCcEEEEeecCC
Q 023716 247 LTTSADEDNKVYVSTVQAYDYPVTAFQWHPE 277 (278)
Q Consensus 247 lA~s~D~~g~~~ieaie~~~~pi~GvQfHPE 277 (278)
+.++.. || .+|.|+++++|++.||||||
T Consensus 316 th~nln-Dg--TvEGi~h~~~P~fSVQ~HPE 343 (368)
T COG0505 316 THVNLN-DG--TVEGIRHKDLPAFSVQYHPE 343 (368)
T ss_pred EEEeCC-CC--CccceecCCCceEEEccCCC
Confidence 777764 47 89999999999999999999
No 44
>PRK05380 pyrG CTP synthetase; Validated
Probab=99.87 E-value=4.1e-21 Score=185.70 Aligned_cols=197 Identities=21% Similarity=0.294 Sum_probs=123.9
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCC----eEEEEeCCCCh---hhHHHhcccCCEEEEcCCCCC
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGA----RVIPLIYNEPE---DVLFEKLELVNGVLYTGGWAK 131 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga----~~v~i~~~~~~---~~l~~~l~~iDGlIl~GG~~~ 131 (278)
.+-.||+++-... ..++| .|..++|+.+|+ ++.+...++.. +...+.++.+||||||||...
T Consensus 287 ~~v~IalVGKY~~---------l~DaY--~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L~~~DGIIlpGGfG~ 355 (533)
T PRK05380 287 GEVTIALVGKYVE---------LPDAY--KSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLKGVDGILVPGGFGE 355 (533)
T ss_pred CceEEEEEeCccC---------CcHHH--HHHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHhhcCCEEEecCCCCc
Confidence 4568999976532 23566 577888888765 44554444321 124567889999999999763
Q ss_pred CccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCccccccccc-cccc---cccc-ceecc---c-ccCCc
Q 023716 132 DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFN-AADQ---ASTL-QFMEN---T-SIEGT 202 (278)
Q Consensus 132 ~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~~~il~~~~-~~~~---~~~l-~~~~~---~-~~~~~ 202 (278)
... .....+++++.+++ +|+||||+|||+|++++||+.--++... .+.. ..++ .+..+ . ..+++
T Consensus 356 ~~~--~g~i~~i~~a~e~~-----iPiLGIClGmQll~va~Ggnv~g~qda~s~E~~~~t~~pvI~~~~~q~~~~~~ggt 428 (533)
T PRK05380 356 RGI--EGKILAIRYARENN-----IPFLGICLGMQLAVIEFARNVLGLEDANSTEFDPDTPHPVIDLMPEQKDVSDLGGT 428 (533)
T ss_pred ccc--ccHHHHHHHHHHCC-----CcEEEEchHHHHHHHHhcccccCcccCcccccCCCCCCCeEeeccccccccccCCc
Confidence 221 12346788888888 9999999999999999999831011110 0100 0111 11111 0 01222
Q ss_pred cccc------Cc-hhHHHhhCCccEE-EEEEeeecCccchhhhccCCCCcEEEEEEccCCCCeEEEEEEeCCCcE-EEEe
Q 023716 203 VFQR------FP-PKLIKKLSTDCLV-MQNHHYGISPETLRKNLDLSRFFKMLTTSADEDNKVYVSTVQAYDYPV-TAFQ 273 (278)
Q Consensus 203 lf~~------~p-~~l~~~l~~~~~~-~~~H~~~i~~~~~~~~~~L~~~~~vlA~s~D~~g~~~ieaie~~~~pi-~GvQ 273 (278)
+.-. .+ +.+.+.++.+.+. -+.|+|.+++..-|++.+. +++++|++.|. | .||+||.+++|+ +|||
T Consensus 429 mrlg~h~v~i~~gS~l~~iyg~~~i~ErhrHryeVNs~h~qal~~~--GL~vsa~s~Dg-g--lVEaIEl~~hpfflGVQ 503 (533)
T PRK05380 429 MRLGAYPCKLKPGTLAAEIYGKEEIYERHRHRYEVNNKYREQLEKA--GLVFSGTSPDG-R--LVEIVELPDHPWFVGVQ 503 (533)
T ss_pred ccccceeEEECCCChHHHHhCCCceeeecccceecCHHHHHHHhhc--CeEEEEEcCCC-C--cEEEEEeCCCCEEEEEe
Confidence 2100 12 2355556654432 3457777888777877663 89999999762 4 899999999996 6999
Q ss_pred ecCCC
Q 023716 274 WHPEV 278 (278)
Q Consensus 274 fHPEk 278 (278)
||||.
T Consensus 504 wHPE~ 508 (533)
T PRK05380 504 FHPEF 508 (533)
T ss_pred CCCCC
Confidence 99994
No 45
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=99.86 E-value=6e-21 Score=162.82 Aligned_cols=165 Identities=19% Similarity=0.167 Sum_probs=101.5
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHHH----HHHHHHHHHhcCCCCCCcEEEEec
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIV----EKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~----~~li~~al~~~~~g~~~PVLGICl 163 (278)
.|..++++++|+.+++.. +++ .++++|+|||||-+.....+.... .+.++.+++.. +|+||||+
T Consensus 15 ~Sv~~Aler~G~~~~vs~---d~~----~i~~AD~liLPGVGaf~~am~~L~~~gl~~~i~~~~~~~-----kP~LGICl 82 (204)
T COG0118 15 RSVKKALERLGAEVVVSR---DPE----EILKADKLILPGVGAFGAAMANLRERGLIEAIKEAVESG-----KPFLGICL 82 (204)
T ss_pred HHHHHHHHHcCCeeEEec---CHH----HHhhCCEEEecCCCCHHHHHHHHHhcchHHHHHHHHhcC-----CCEEEEeH
Confidence 678899999999888753 343 356899999999766444443322 24444444456 99999999
Q ss_pred hHHHHHHHH--hCcccccccccccccccccc--eecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhcc
Q 023716 164 GFELLTMII--SKDKNILESFNAADQASTLQ--FMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLD 239 (278)
Q Consensus 164 G~QlL~~~~--Gg~~~il~~~~~~~~~~~l~--~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~ 239 (278)
|||+|.... ++...-+.-+++.....+.. -.+|+. +.++...-.+.+.+.+.+...+|+.|+|.+.+
T Consensus 83 GMQlLfe~SeE~~~~~GLg~i~G~V~r~~~~~~kvPHMG-WN~l~~~~~~~l~~gi~~~~~~YFVHSY~~~~-------- 153 (204)
T COG0118 83 GMQLLFERSEEGGGVKGLGLIPGKVVRFPAEDLKVPHMG-WNQVEFVRGHPLFKGIPDGAYFYFVHSYYVPP-------- 153 (204)
T ss_pred hHHhhhhcccccCCCCCcceecceEEEcCCCCCCCCccc-cceeeccCCChhhcCCCCCCEEEEEEEEeecC--------
Confidence 999998742 22211222222211111100 113332 33332222234556666667899999997643
Q ss_pred CCCCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 240 LSRFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 240 L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
.+.-.+++++ |+ |.+|.++|+ +.+++|+||||||
T Consensus 154 -~~~~~v~~~~-~Y-G~~f~AaV~--k~N~~g~QFHPEK 187 (204)
T COG0118 154 -GNPETVVATT-DY-GEPFPAAVA--KDNVFGTQFHPEK 187 (204)
T ss_pred -CCCceEEEec-cC-CCeeEEEEE--eCCEEEEecCccc
Confidence 1233466665 44 655999998 4589999999998
No 46
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=99.85 E-value=1.3e-20 Score=192.24 Aligned_cols=174 Identities=14% Similarity=0.203 Sum_probs=116.6
Q ss_pred CCchhhhHHHHHHHHHHc-CCeEEEEeCCC-ChhhHHHh---cccCCEEEEcCCCCCCccch---HHHHHHHHHHHHhcC
Q 023716 80 ATNASYIAASYVKFVESA-GARVIPLIYNE-PEDVLFEK---LELVNGVLYTGGWAKDGLYY---AIVEKVFKKILEKND 151 (278)
Q Consensus 80 ~~~~~yi~~syv~~le~~-Ga~~v~i~~~~-~~~~l~~~---l~~iDGlIl~GG~~~~p~~~---~~~~~li~~al~~~~ 151 (278)
++++||.. ..++.|+.. |..++++..++ +.+++..+ +..+|||||+||+. +|... +...+++... .+
T Consensus 88 DnyDSfTy-NL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG-~P~~~~d~Gi~~~~i~~~--~~- 162 (918)
T PLN02889 88 DNYDSYTY-NIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPG-SPTCPADIGICLRLLLEC--RD- 162 (918)
T ss_pred eCCCchHH-HHHHHHHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCC-CccchHHHHHHHHHHHHh--CC-
Confidence 34567754 477888887 99999998874 34444321 35789999999998 34322 2222333221 34
Q ss_pred CCCCCcEEEEechHHHHHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCc
Q 023716 152 AGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISP 231 (278)
Q Consensus 152 ~g~~~PVLGIClG~QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~ 231 (278)
+||||||+|||+|+.++||++.-.. ...|+....+.+. +..+|.++|+.. ++...++.+|+..+.+
T Consensus 163 ----iPILGICLGhQ~i~~~~Gg~V~~~~-~~~HG~~s~I~h~-----~~~lF~glp~~~----~~~f~v~RYHSL~v~~ 228 (918)
T PLN02889 163 ----IPILGVCLGHQALGYVHGARIVHAP-EPVHGRLSEIEHN-----GCRLFDDIPSGR----NSGFKVVRYHSLVIDA 228 (918)
T ss_pred ----CcEEEEcHHHHHHHHhcCceEEeCC-CceeeeeeeEeec-----CchhhcCCCcCC----CCCceEEeCCCccccc
Confidence 9999999999999999999843221 1234443333321 556888776521 1234677889976533
Q ss_pred cchhhhccCCCCcEEEEEEccCC------------------------------------C-------------CeEEEEE
Q 023716 232 ETLRKNLDLSRFFKMLTTSADED------------------------------------N-------------KVYVSTV 262 (278)
Q Consensus 232 ~~~~~~~~L~~~~~vlA~s~D~~------------------------------------g-------------~~~ieai 262 (278)
..||+.++++|++.|.+ | ..++++|
T Consensus 229 ------~~lP~~L~~~A~t~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viMai 302 (918)
T PLN02889 229 ------ESLPKELVPIAWTSSSDTLSFLESQKSGLVPDAYESQIGQSGSSDPFSSKLKNGTSWPSSHSERMQNGKILMGI 302 (918)
T ss_pred ------CCCCCceEEEEEECCCcccccccccccccccccccccccccccccccccccccccccccccccccCCCCeeEEE
Confidence 35889999999886521 0 0289999
Q ss_pred EeCCCcEEEEeecCCC
Q 023716 263 QAYDYPVTAFQWHPEV 278 (278)
Q Consensus 263 e~~~~pi~GvQfHPEk 278 (278)
+|+..|+||||||||.
T Consensus 303 rH~~~P~~GVQfHPES 318 (918)
T PLN02889 303 MHSTRPHYGLQFHPES 318 (918)
T ss_pred EECCCceEEEEeCCcc
Confidence 9999999999999994
No 47
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.85 E-value=2.2e-20 Score=160.78 Aligned_cols=168 Identities=15% Similarity=0.219 Sum_probs=103.6
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCc-cchH--
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDG-LYYA-- 137 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p-~~~~-- 137 (278)
+.|+|+...++. .++.++++.+|++++.++. .+ .++.+||||||||....- ....
T Consensus 2 m~~~i~~~~g~~---------------~~~~~~l~~~g~~~~~~~~---~~----~l~~~dgiii~GG~~~~~~~~~~~~ 59 (189)
T PRK13525 2 MKIGVLALQGAV---------------REHLAALEALGAEAVEVRR---PE----DLDEIDGLILPGGESTTMGKLLRDF 59 (189)
T ss_pred CEEEEEEcccCH---------------HHHHHHHHHCCCEEEEeCC---hh----HhccCCEEEECCCChHHHHHHHHhc
Confidence 579999876531 3566889999999999863 22 367899999999975211 1111
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCc-ccccccccccccccccceecccccCCcccccCchhHHHhhC
Q 023716 138 IVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKD-KNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLS 216 (278)
Q Consensus 138 ~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~-~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~ 216 (278)
...++++.+.+++ +||||||.|+|+|+.++||. ..-+.-.+.+....+..+.........++.+ +.
T Consensus 60 ~~~~~i~~~~~~g-----~PilGIC~G~QlL~~~~gg~~~~~lg~~~~~v~~~~~g~~~g~~~~~~~~~~--------~~ 126 (189)
T PRK13525 60 GLLEPLREFIASG-----LPVFGTCAGMILLAKEIEGYEQEHLGLLDITVRRNAFGRQVDSFEAELDIKG--------LG 126 (189)
T ss_pred cHHHHHHHHHHCC-----CeEEEECHHHHHHHhhcccCCCCceeeEEEEEEEccCCCceeeEEecccccC--------CC
Confidence 1235677777777 99999999999999999884 1000001100000000000000001112222 22
Q ss_pred CccEEEEEEeeecCccchhhhccCCCCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 217 TDCLVMQNHHYGISPETLRKNLDLSRFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 217 ~~~~~~~~H~~~i~~~~~~~~~~L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
+...++.+|+ +.+..+|++++++|++. + .+++++. .++||+|||||+
T Consensus 127 ~~~~~~~~H~--------d~v~~lp~~~~vlA~~~---~--~~~~~~~--~~~~g~QfHPE~ 173 (189)
T PRK13525 127 EPFPAVFIRA--------PYIEEVGPGVEVLATVG---G--RIVAVRQ--GNILATSFHPEL 173 (189)
T ss_pred CCeEEEEEeC--------ceeeccCCCcEEEEEcC---C--EEEEEEe--CCEEEEEeCCcc
Confidence 2335677887 45667999999999984 3 4567763 479999999995
No 48
>PRK05665 amidotransferase; Provisional
Probab=99.85 E-value=1.3e-20 Score=167.97 Aligned_cols=158 Identities=16% Similarity=0.178 Sum_probs=100.4
Q ss_pred HHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCC---CccchHHHHHHHHHHHHhcCCCCCCcEEEEechHH
Q 023716 90 YVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK---DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFE 166 (278)
Q Consensus 90 yv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~---~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~Q 166 (278)
+.+++...+.......++...++++..++.+||+|++||+.. +..|....+++++.+++++ +|+||||+|+|
T Consensus 28 ~~~ll~~~~~~~~~~~~~~~~~~~p~~~~~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~-----~PilGIC~GhQ 102 (240)
T PRK05665 28 FEQLFARQPIAAEFVVYNVVQGDYPADDEKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERG-----DKLLGVCFGHQ 102 (240)
T ss_pred HHHHHHhCCCCceEEEEeccCCCCCCCcccCCEEEECCCCCCccccchHHHHHHHHHHHHHhcC-----CCEEEEeHHHH
Confidence 455666666432222222222223334678999999999763 2345556678888888888 99999999999
Q ss_pred HHHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCCCCcEE
Q 023716 167 LLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKM 246 (278)
Q Consensus 167 lL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~~~~v 246 (278)
+|+.++||++.-. ....+.....+.++. ...+|...+. ....+.+|+ +.+..||+++++
T Consensus 103 lla~AlGG~V~~~-~~G~e~G~~~~~~~~----~~~~~~~~~~--------~~~~~~~H~--------D~V~~LP~ga~~ 161 (240)
T PRK05665 103 LLALLLGGKAERA-SQGWGVGIHRYQLAA----HAPWMSPAVT--------ELTLLISHQ--------DQVTALPEGATV 161 (240)
T ss_pred HHHHHhCCEEEeC-CCCcccceEEEEecC----CCccccCCCC--------ceEEEEEcC--------CeeeeCCCCcEE
Confidence 9999999984211 111111112222221 2234433332 224556676 667789999999
Q ss_pred EEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 247 LTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 247 lA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
+|.|.+ . -+++++. +.++||+|||||.
T Consensus 162 La~s~~--~--~~q~~~~-~~~~~g~QfHPE~ 188 (240)
T PRK05665 162 IASSDF--C--PFAAYHI-GDQVLCFQGHPEF 188 (240)
T ss_pred EEeCCC--C--cEEEEEe-CCCEEEEecCCcC
Confidence 999965 4 5788874 4579999999995
No 49
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.85 E-value=6.5e-21 Score=186.80 Aligned_cols=162 Identities=15% Similarity=0.174 Sum_probs=105.7
Q ss_pred chhhhHHHHHHHHHHcCCeEEEEeCCCChh-hHHHhc-ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEE
Q 023716 82 NASYIAASYVKFVESAGARVIPLIYNEPED-VLFEKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (278)
Q Consensus 82 ~~~yi~~syv~~le~~Ga~~v~i~~~~~~~-~l~~~l-~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVL 159 (278)
++||. ...++.|++.|+.+.+++.+.+.+ .+.++. .+.|+|||+||+.. |...+....++++ +..+ +|||
T Consensus 10 ~dsft-~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~~~~~~IIlSpGPg~-p~d~~~~~~i~~~-~~~~-----iPIL 81 (531)
T PRK09522 10 IDSFT-YNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGV-PSEAGCMPELLTR-LRGK-----LPII 81 (531)
T ss_pred CChHH-HHHHHHHHHCCCCEEEEECCCCCccCHHHHHhcCcCEEEEcCCCCC-hhhCCCCHHHHHH-HhcC-----CCEE
Confidence 45554 347788899999998887654321 122221 24789999999983 2211122345543 2346 9999
Q ss_pred EEechHHHHHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhcc
Q 023716 160 AHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLD 239 (278)
Q Consensus 160 GIClG~QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~ 239 (278)
|||+|||+|+.++||++.-. ....+.....+. + . +..+|.++|. ...++.+|++. +..
T Consensus 82 GIClG~QlLa~a~GG~V~~~-~~~~~G~~~~i~---~-~-~~~lf~~~~~--------~~~v~~~Hs~~--------v~~ 139 (531)
T PRK09522 82 GICLGHQAIVEAYGGYVGQA-GEILHGKASSIE---H-D-GQAMFAGLTN--------PLPVARYHSLV--------GSN 139 (531)
T ss_pred EEcHHHHHHHHhcCCEEEeC-CceeeeeEEEEe---e-c-CCccccCCCC--------CcEEEEehhee--------ccc
Confidence 99999999999999984211 111111111111 1 1 3345655443 34677889863 457
Q ss_pred CCCCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 240 LSRFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 240 L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
+|++++++|++ | + .++++++++.|+||||||||+
T Consensus 140 lP~~l~vlA~s-d--~--~v~ai~~~~~~i~GVQFHPEs 173 (531)
T PRK09522 140 IPAGLTINAHF-N--G--MVMAVRHDADRVCGFQFHPES 173 (531)
T ss_pred CCCCcEEEEec-C--C--CEEEEEECCCCEEEEEecCcc
Confidence 89999999975 4 6 799999999999999999995
No 50
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.84 E-value=5.7e-20 Score=159.11 Aligned_cols=160 Identities=14% Similarity=0.155 Sum_probs=94.9
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHH-HHHHHHHHHHhcCCCCCCcEEEEechHH
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAI-VEKVFKKILEKNDAGDHFPLYAHCLGFE 166 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~-~~~li~~al~~~~~g~~~PVLGIClG~Q 166 (278)
.|+.++|++.|+.+.++. +++ .++.+|+|||||++......... ...+++.+.+.+ +||||||+|||
T Consensus 14 ~s~~~~l~~~g~~~~~v~---~~~----~~~~~d~iIlPG~G~~~~~~~~l~~~~l~~~i~~~~-----~PilGIClG~Q 81 (196)
T PRK13170 14 SSVKFAIERLGYEPVVSR---DPD----VILAADKLFLPGVGTAQAAMDQLRERELIDLIKACT-----QPVLGICLGMQ 81 (196)
T ss_pred HHHHHHHHHCCCeEEEEC---CHH----HhCCCCEEEECCCCchHHHHHHHHHcChHHHHHHcC-----CCEEEECHHHH
Confidence 567889999999988875 222 35679999999954421111111 124666666666 99999999999
Q ss_pred HHHHHHhCc--ccccccccc---ccc--ccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhcc
Q 023716 167 LLTMIISKD--KNILESFNA---ADQ--ASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLD 239 (278)
Q Consensus 167 lL~~~~Gg~--~~il~~~~~---~~~--~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~ 239 (278)
+|+.++++. ...+..++. +.. ..++ ++.. +..+...-.+.+.+.+.++..++++|++++
T Consensus 82 ll~~~~~~~~~~~~lg~~~g~v~~~~~~~~~~---p~~G-~~~v~~~~~~~l~~~l~~~~~v~~~Hs~~l---------- 147 (196)
T PRK13170 82 LLGERSEESGGVDCLGIIDGPVKKMTDFGLPL---PHMG-WNQVTPQAGHPLFQGIEDGSYFYFVHSYAM---------- 147 (196)
T ss_pred HHhhhcccCCCCCCcccccEEEEECCCCCCCC---Cccc-cceeEeCCCChhhhCCCcCCEEEEECeeec----------
Confidence 999998442 111111110 000 0000 0100 011110011234555556668899999854
Q ss_pred CCCCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 240 LSRFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 240 L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
+.+..++|++.+ |..++.+++ +.++||+||||||
T Consensus 148 -p~~~~~la~s~~--~~~~~~~~~--~~~i~G~QFHPE~ 181 (196)
T PRK13170 148 -PVNEYTIAQCNY--GEPFSAAIQ--KDNFFGVQFHPER 181 (196)
T ss_pred -CCCCcEEEEecC--CCeEEEEEE--cCCEEEEECCCCC
Confidence 334457788765 555676665 4679999999997
No 51
>PRK08250 glutamine amidotransferase; Provisional
Probab=99.83 E-value=4.9e-20 Score=163.79 Aligned_cols=160 Identities=19% Similarity=0.212 Sum_probs=106.4
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCC------Cccch--HHHHHHHHHHHHhcCCCCCCcEE
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK------DGLYY--AIVEKVFKKILEKNDAGDHFPLY 159 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~------~p~~~--~~~~~li~~al~~~~~g~~~PVL 159 (278)
..|..+++++|..+......... .++..++.+||||++||+.. +..|. ....++++.+++.+ +|||
T Consensus 15 g~~~~~~~~~g~~~~~~~~~~g~-~~p~~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~~-----~Pvl 88 (235)
T PRK08250 15 GAYLKWAENRGYDISYSRVYAGE-ALPENADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAG-----KAVI 88 (235)
T ss_pred hHHHHHHHHCCCeEEEEEccCCC-CCCCCccccCEEEECCCCCChhhccccccccchHHHHHHHHHHHHcC-----CCEE
Confidence 34667888999887766544322 23324568999999999752 11232 23457888888888 9999
Q ss_pred EEechHHHHHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhcc
Q 023716 160 AHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLD 239 (278)
Q Consensus 160 GIClG~QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~ 239 (278)
|||+|+|+|+.++||++. .....+....++.++.+.. ...+|..+|+ ...+.++|+. . ..
T Consensus 89 GIC~G~Qlla~alGg~V~--~~~~~e~G~~~v~lt~~g~-~d~l~~~~~~--------~~~v~~~H~d--------~-~~ 148 (235)
T PRK08250 89 GVCLGAQLIGEALGAKYE--HSPEKEIGYFPITLTEAGL-KDPLLSHFGS--------TLTVGHWHND--------M-PG 148 (235)
T ss_pred EEChhHHHHHHHhCceec--cCCCCceeEEEEEEccccc-cCchhhcCCC--------CcEEEEEecc--------e-ec
Confidence 999999999999999842 1111233334444443322 2335544443 3356677774 2 36
Q ss_pred CCCCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 240 LSRFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 240 L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
||++++++|++.+ . -++++.. +.++||+|||||.
T Consensus 149 lP~~a~~LA~s~~--~--~~qa~~~-~~~~~g~QfHPE~ 182 (235)
T PRK08250 149 LTDQAKVLATSEG--C--PRQIVQY-SNLVYGFQCHMEF 182 (235)
T ss_pred CCCCCEEEECCCC--C--CceEEEe-CCCEEEEeecCcC
Confidence 9999999999954 3 3677764 4569999999994
No 52
>PRK07053 glutamine amidotransferase; Provisional
Probab=99.83 E-value=1.5e-19 Score=160.62 Aligned_cols=159 Identities=18% Similarity=0.165 Sum_probs=106.5
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCC--C---ccchHHHHHHHHHHHHhcCCCCCCcEEEEe
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK--D---GLYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~--~---p~~~~~~~~li~~al~~~~~g~~~PVLGIC 162 (278)
.++.+++++.|..+.+++....+. ....+..+||||++||+.. + ..+.....++++.+++.+ +|+||||
T Consensus 17 g~i~~~L~~~g~~~~v~~~~~~~~-~~~~~~~~d~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~~~~-----~PvlGIC 90 (234)
T PRK07053 17 GSFEQVLGARGYRVRYVDVGVDDL-ETLDALEPDLLVVLGGPIGVYDDELYPFLAPEIALLRQRLAAG-----LPTLGIC 90 (234)
T ss_pred hHHHHHHHHCCCeEEEEecCCCcc-CCCCccCCCEEEECCCCCCCCCCCcCCcHHHHHHHHHHHHHCC-----CCEEEEC
Confidence 357789999999988887643321 1123567999999999752 2 134445568888888888 9999999
Q ss_pred chHHHHHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCCC
Q 023716 163 LGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSR 242 (278)
Q Consensus 163 lG~QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~ 242 (278)
+|+|+|+.++||++. .....+....++.++.... ... + ..+.....++++|+. .+ .||+
T Consensus 91 ~G~Qlla~alGg~V~--~~~~~e~G~~~i~~t~~g~-~~p--------l-~~~~~~~~~~~~H~d--------~~-~lP~ 149 (234)
T PRK07053 91 LGAQLIARALGARVY--PGGQKEIGWAPLTLTDAGR-ASP--------L-RHLGAGTPVLHWHGD--------TF-DLPE 149 (234)
T ss_pred ccHHHHHHHcCCcEe--cCCCCeEeEEEEEEecccc-CCh--------h-hcCCCcceEEEEeCC--------EE-ecCC
Confidence 999999999999842 1111222333444333211 111 2 123334467778874 23 5999
Q ss_pred CcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 243 FFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 243 ~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
+++++|+|.+ . -++++.. +.++||+|||||.
T Consensus 150 ga~~La~s~~--~--~~qaf~~-g~~~~g~QfHpE~ 180 (234)
T PRK07053 150 GATLLASTPA--C--RHQAFAW-GNHVLALQFHPEA 180 (234)
T ss_pred CCEEEEcCCC--C--CeeEEEe-CCCEEEEeeCccC
Confidence 9999999965 2 3678874 4579999999995
No 53
>PLN02327 CTP synthase
Probab=99.83 E-value=1.6e-19 Score=175.08 Aligned_cols=194 Identities=20% Similarity=0.293 Sum_probs=120.3
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcC----CeEEEEeCCCC---hhh----------HHHhcccCCE
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAG----ARVIPLIYNEP---EDV----------LFEKLELVNG 122 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~G----a~~v~i~~~~~---~~~----------l~~~l~~iDG 122 (278)
.-.||+++-... ..++| .|..++|+.+| ..+.+...++. ++. +.+.|+++||
T Consensus 297 ~v~IalVGKY~~---------l~DAY--~Si~eAL~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L~~~DG 365 (557)
T PLN02327 297 PVRIAMVGKYTG---------LSDSY--LSVLKALLHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLLKGADG 365 (557)
T ss_pred ceEEEEEecccC---------CcHhH--HHHHHHHHHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhhccCCE
Confidence 467999875422 23556 46777887665 44544444321 111 2356889999
Q ss_pred EEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCcc-ccc----ccccccccccc-cceecc
Q 023716 123 VLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDK-NIL----ESFNAADQAST-LQFMEN 196 (278)
Q Consensus 123 lIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~~-~il----~~~~~~~~~~~-l~~~~~ 196 (278)
|++|||... ....+. ...++++.+.+ +|+||||+|||++++.++++. .+. .+++.+. ..+ +.+.+.
T Consensus 366 IvvpGGfG~-~~~~G~-i~ai~~are~~-----iP~LGIClGmQl~viefaRnvlG~~dAnS~Efdp~t-~~pvI~~m~e 437 (557)
T PLN02327 366 ILVPGGFGD-RGVEGK-ILAAKYARENK-----VPYLGICLGMQIAVIEFARSVLGLKDANSTEFDPET-PNPCVIFMPE 437 (557)
T ss_pred EEeCCCCCC-cccccH-HHHHHHHHHcC-----CCEEEEcHHHHHHHHHHHHhhcCCcCCCccccCCCC-CCCEEEEehh
Confidence 999999752 221122 24567788888 999999999999999999872 111 1122111 111 111111
Q ss_pred ---cccCCcccc-----cCc---hhHHHhhCCccE--EEEEEeeecCccchhhhccC-CCCcEEEEEEccCCCCeEEEEE
Q 023716 197 ---TSIEGTVFQ-----RFP---PKLIKKLSTDCL--VMQNHHYGISPETLRKNLDL-SRFFKMLTTSADEDNKVYVSTV 262 (278)
Q Consensus 197 ---~~~~~~lf~-----~~p---~~l~~~l~~~~~--~~~~H~~~i~~~~~~~~~~L-~~~~~vlA~s~D~~g~~~ieai 262 (278)
...+++|.= .++ +.+.+.+++... ..+.|+|.++++. ++.+ ..+++++|++.| |. ++|++
T Consensus 438 ~~~~~~GGtMRLG~~~~~~~~~~S~l~~iYg~~~~VnerHrHRYeVN~q~---v~~le~~gL~vsa~s~d--g~-~IEai 511 (557)
T PLN02327 438 GSKTHMGGTMRLGSRRTYFQTPDCKSAKLYGNVSFVDERHRHRYEVNPEM---VPRLEKAGLSFVGKDET--GR-RMEIV 511 (557)
T ss_pred cccccCCceEECCCcccccCCCCCHHHHHhCCccceeeeeccccccCHHH---HHHHhhcCcEEEEEcCC--CC-EEEEE
Confidence 112455421 122 234556665432 4566778888755 4556 589999999987 43 89999
Q ss_pred EeCCCcE-EEEeecCCC
Q 023716 263 QAYDYPV-TAFQWHPEV 278 (278)
Q Consensus 263 e~~~~pi-~GvQfHPEk 278 (278)
|++++|+ +|||||||.
T Consensus 512 E~~~~pffvGVQfHPE~ 528 (557)
T PLN02327 512 ELPSHPFFVGVQFHPEF 528 (557)
T ss_pred EeCCCCEEEEEEcCCCC
Confidence 9999997 599999994
No 54
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.82 E-value=1.1e-19 Score=157.85 Aligned_cols=163 Identities=16% Similarity=0.140 Sum_probs=92.7
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccch-----HHHHHHHHHHHHhcCCCCCCcEEEEe
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYY-----AIVEKVFKKILEKNDAGDHFPLYAHC 162 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~-----~~~~~li~~al~~~~~g~~~PVLGIC 162 (278)
.+..+++++.|+.++++.. +++ ++.+|+|||||+........ +..+.+.+.+++++ +||||||
T Consensus 13 ~~v~~~l~~~g~~~~~~~~---~~~----l~~~d~lilPG~g~~~~~~~~l~~~~~~~~l~~~~~~~~-----~pvlGiC 80 (201)
T PRK13152 13 NSVAKAFEKIGAINFIAKN---PKD----LQKADKLLLPGVGSFKEAMKNLKELGFIEALKEQVLVQK-----KPILGIC 80 (201)
T ss_pred HHHHHHHHHCCCeEEEECC---HHH----HcCCCEEEECCCCchHHHHHHHHHcCcHHHHHHHHHhCC-----CcEEEEC
Confidence 5788999999998887653 222 46799999999887422111 11245556666777 9999999
Q ss_pred chHHHHHHH-H-hCcccccccccccc---c-ccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhh
Q 023716 163 LGFELLTMI-I-SKDKNILESFNAAD---Q-ASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRK 236 (278)
Q Consensus 163 lG~QlL~~~-~-Gg~~~il~~~~~~~---~-~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~ 236 (278)
+|||+|+.+ . ||...-+..++... . ..+.. .+|.. ...+...-.+.+.+.++++..++++|++.+ +.
T Consensus 81 ~G~Q~l~~~~~~~~~~~~lg~~~g~v~~~~~~~~~~-~~~~g-~~~v~~~~~~~l~~~l~~~~~~~~vHS~~v-----~~ 153 (201)
T PRK13152 81 LGMQLFLERGYEGGVCEGLGFIEGEVVKFEEDLNLK-IPHMG-WNELEILKQSPLYQGIPEKSDFYFVHSFYV-----KC 153 (201)
T ss_pred HhHHHHhhcccccCCcCCcccccEEEEECCCCCCCc-CCccC-eEEEEECCCChhhhCCCCCCeEEEEcccEe-----ec
Confidence 999999997 2 33211111111100 0 00000 00100 001100001223344444446677888754 21
Q ss_pred hccCCCCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 237 NLDLSRFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 237 ~~~L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
++ ..+++++.+ |..++++++ +.+++|+|||||+
T Consensus 154 ---~~--~~v~a~~~~--g~~~~~a~~--~~~i~GvQFHPE~ 186 (201)
T PRK13152 154 ---KD--EFVSAKAQY--GHKFVASLQ--KDNIFATQFHPEK 186 (201)
T ss_pred ---CC--CcEEEEECC--CCEEEEEEe--cCCEEEEeCCCee
Confidence 22 457787765 544777887 4579999999996
No 55
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.82 E-value=1.3e-19 Score=158.31 Aligned_cols=159 Identities=17% Similarity=0.192 Sum_probs=89.9
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCcc--chHH---HHHHHHHHHHhcCCCCCCcEEEEe
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGL--YYAI---VEKVFKKILEKNDAGDHFPLYAHC 162 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~--~~~~---~~~li~~al~~~~~g~~~PVLGIC 162 (278)
.+++++|++.|+++ .+.+..+++ .++.+|||||||+...... +... .+.+++.+.+.+ +|+||||
T Consensus 15 ~s~~~al~~~g~~~-~v~~~~~~~----~l~~~d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~PvlGiC 84 (209)
T PRK13146 15 RSAAKALERAGAGA-DVVVTADPD----AVAAADRVVLPGVGAFADCMRGLRAVGLGEAVIEAVLAAG-----RPFLGIC 84 (209)
T ss_pred HHHHHHHHHcCCCc-cEEEECCHH----HhcCCCEEEECCCCcHHHHHHHHHHCCcHHHHHHHHHhCC-----CcEEEEC
Confidence 67889999999954 222233443 3678999999997652111 1111 234555555556 9999999
Q ss_pred chHHHHHHH------------HhCcccccccccccccccc-cceec-ccccCCcccccCchhHHHhhCCccEEEEEEeee
Q 023716 163 LGFELLTMI------------ISKDKNILESFNAADQAST-LQFME-NTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYG 228 (278)
Q Consensus 163 lG~QlL~~~------------~Gg~~~il~~~~~~~~~~~-l~~~~-~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~ 228 (278)
+|||+|+.. ++|++.... ........+ ..|.. ....++.+|.+ +.+...++++|++.
T Consensus 85 ~G~q~l~~~~~e~~~~~glg~l~g~v~~~~-~~~~~~~~p~~G~~~v~~~~~~~lf~~--------~~~~~~v~~~Hs~~ 155 (209)
T PRK13146 85 VGMQLLFERGLEHGDTPGLGLIPGEVVRFQ-PDGPALKVPHMGWNTVDQTRDHPLFAG--------IPDGARFYFVHSYY 155 (209)
T ss_pred HHHHHHhhcccccCCCCCcceEeEEEEEcC-CCCCCCccCccChHHeeeCCCChhccC--------CCCCCEEEEEeEEE
Confidence 999999997 333311100 000000000 11100 00002334444 34445788899985
Q ss_pred cCccchhhhccCCCCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 229 ISPETLRKNLDLSRFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 229 i~~~~~~~~~~L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
+. .++ ...++|++.+ +..+. ++. .+.++||+|||||+
T Consensus 156 v~--------~~~-~~~~la~s~~--~~~~~-a~~-~~~~i~GvQFHPE~ 192 (209)
T PRK13146 156 AQ--------PAN-PADVVAWTDY--GGPFT-AAV-ARDNLFATQFHPEK 192 (209)
T ss_pred EE--------cCC-CCcEEEEEcC--CCEEE-EEE-ecCCEEEEEcCCcc
Confidence 52 222 4578898865 43234 443 35789999999996
No 56
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.82 E-value=2e-19 Score=155.85 Aligned_cols=158 Identities=18% Similarity=0.210 Sum_probs=92.4
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccch--HH--HHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYY--AI--VEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~--~~--~~~li~~al~~~~~g~~~PVLGICl 163 (278)
.++++++++.|..++++. +.+ .++++|+||+|||........ .. ..+.++.+++.+ +||||||+
T Consensus 13 ~~~~~~l~~~g~~v~~~~---~~~----~l~~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~-----~PvlGiC~ 80 (199)
T PRK13181 13 RSVANALKRLGVEAVVSS---DPE----EIAGADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKK-----QPVLGICL 80 (199)
T ss_pred HHHHHHHHHCCCcEEEEc---ChH----HhccCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCC-----CCEEEECH
Confidence 568889999999988773 232 256799999999765211111 11 124455555666 99999999
Q ss_pred hHHHHHHHHhCc-cccccccccccc-------c-cccceec-ccccCCcccccCchhHHHhhCCccEEEEEEeeecCccc
Q 023716 164 GFELLTMIISKD-KNILESFNAADQ-------A-STLQFME-NTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPET 233 (278)
Q Consensus 164 G~QlL~~~~Gg~-~~il~~~~~~~~-------~-~~l~~~~-~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~ 233 (278)
|+|+|+.+..+. ..-+.-++.+.. . ..+.+.. ....++. +.+.+++...++++|++.+.+
T Consensus 81 G~Qll~~~~~~~~~~glg~l~~~v~~~~~~~~~~~~~G~~~v~~~~~~~--------lf~~l~~~~~~~~~Hs~~v~~-- 150 (199)
T PRK13181 81 GMQLLFESSEEGNVKGLGLIPGDVKRFRSEPLKVPQMGWNSVKPLKESP--------LFKGIEEGSYFYFVHSYYVPC-- 150 (199)
T ss_pred hHHHhhhhcccCCcCCcceEEEEEEEcCCCCCCCCccCccccccCCCCh--------hHcCCCCCCEEEEeCeeEecc--
Confidence 999999984221 000100100000 0 0011100 0000223 444444455678888875522
Q ss_pred hhhhccCCCCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 234 LRKNLDLSRFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 234 ~~~~~~L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
.+ .+.++|++.+ |..++++++ +.++||+|||||+
T Consensus 151 ------~~-~~~~lA~s~~--~~~~~~~~~--~~~i~GvQFHPE~ 184 (199)
T PRK13181 151 ------ED-PEDVLATTEY--GVPFCSAVA--KDNIYAVQFHPEK 184 (199)
T ss_pred ------CC-cccEEEEEcC--CCEEEEEEE--CCCEEEEECCCcc
Confidence 22 3468898865 555778887 4579999999996
No 57
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.81 E-value=2e-19 Score=155.66 Aligned_cols=154 Identities=18% Similarity=0.180 Sum_probs=92.4
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccc--hH--HHHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLY--YA--IVEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~--~~--~~~~li~~al~~~~~g~~~PVLGICl 163 (278)
.+..+.|++.|+.+.+++. .+ .++.+|+||+|||...+... .. ...+.++.+.+++ +||||||+
T Consensus 12 ~~~~~~l~~~g~~v~v~~~---~~----~l~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~pilGiC~ 79 (198)
T cd01748 12 RSVANALERLGAEVIITSD---PE----EILSADKLILPGVGAFGDAMANLRERGLIEALKEAIASG-----KPFLGICL 79 (198)
T ss_pred HHHHHHHHHCCCeEEEEcC---hH----HhccCCEEEECCCCcHHHHHHHHHHcChHHHHHHHHHCC-----CcEEEECH
Confidence 4678999999999988873 22 25679999999875421110 10 1235666667667 99999999
Q ss_pred hHHHHHHHH--hCcccccccccc--------------cccccccceecccccCCcccccCchhHHHhhCCccEEEEEEee
Q 023716 164 GFELLTMII--SKDKNILESFNA--------------ADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHY 227 (278)
Q Consensus 164 G~QlL~~~~--Gg~~~il~~~~~--------------~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~ 227 (278)
|||+|+.++ |+....+.-++. +.....+... . ++.+| +.+.+...++++|++
T Consensus 80 G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~~~~~~~~~~G~~~v~~~---~-~~~lf--------~~l~~~~~v~~~Hs~ 147 (198)
T cd01748 80 GMQLLFESSEEGGGTKGLGLIPGKVVRFPASEGLKVPHMGWNQLEIT---K-ESPLF--------KGIPDGSYFYFVHSY 147 (198)
T ss_pred HHHHhccccccCCCCCCCCCcceEEEECCCCCCceEEEeccceEEEC---C-CChhh--------hCCCCCCeEEEEeEE
Confidence 999999973 221111111111 1011111110 0 23333 334445567889998
Q ss_pred ecCccchhhhccCCCCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 228 GISPETLRKNLDLSRFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 228 ~i~~~~~~~~~~L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
.+. .++.+.++|++.+ +.++.+. ..+.++||+|||||+
T Consensus 148 ~v~---------~~~~~~~la~s~~--~~~~~~~--~~~~~i~GvQFHPE~ 185 (198)
T cd01748 148 YAP---------PDDPDYILATTDY--GGKFPAA--VEKDNIFGTQFHPEK 185 (198)
T ss_pred EEe---------cCCcceEEEEecC--CCeEEEE--EEcCCEEEEECCCcc
Confidence 652 2344778898865 4334433 346689999999996
No 58
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=99.80 E-value=1e-18 Score=177.18 Aligned_cols=162 Identities=20% Similarity=0.246 Sum_probs=100.9
Q ss_pred HHHHHHHHc-C--CeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechH
Q 023716 89 SYVKFVESA-G--ARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (278)
Q Consensus 89 syv~~le~~-G--a~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~ 165 (278)
+.++.|++. | +.+++++++....+....+..+|||||+||+.. |.. .....+++.+++.+ ....+||||||+||
T Consensus 20 nl~~~l~~~~g~~~~v~vv~~d~~~~~~~~~l~~~D~VVIspGPG~-p~~-~~~~~i~~~i~~~~-~~~~iPvLGIClG~ 96 (742)
T TIGR01823 20 NVVRLLEQQTDISVHVTTVHSDTFQDQLLELLPLFDAIVVGPGPGN-PNN-AQDMGIISELWELA-NLDEVPVLGICLGF 96 (742)
T ss_pred HHHHHHHHhcCCCcEEEEEeCCCCchhhhhhhcCCCEEEECCCCCC-ccc-hhhhHHHHHHHHhc-ccCCCcEEEEchhh
Confidence 566777775 3 567888887544333334678999999999883 321 11224555555432 22349999999999
Q ss_pred HHHHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCCCC--
Q 023716 166 ELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRF-- 243 (278)
Q Consensus 166 QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~~-- 243 (278)
|+|+.++||+..-.. ...|.....+.. . +..+|.+++. ..++.+|++.+.+. .++.
T Consensus 97 QlLa~a~GG~v~~~~-~~~hG~~~~v~~----~-~~~lf~gl~~---------~~v~~~Hs~~v~~~-------~~~~l~ 154 (742)
T TIGR01823 97 QSLCLAQGADISRLP-TPKHGQVYEMHT----N-DAAIFCGLFS---------VKSTRYHSLYANPE-------GIDTLL 154 (742)
T ss_pred HHHHhhcCCEEEECC-CCCcCeEEEEEE----C-CccccCCCCC---------CceeEEEEEEccCC-------CCCcce
Confidence 999999999842111 112222222211 1 3346655542 24677899865332 2333
Q ss_pred cEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 244 FKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 244 ~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
+.+++.+.+ ++ +++++++++.|+||||||||+
T Consensus 155 ~~~~a~~~~-~~--~i~ai~h~~~pi~GVQFHPE~ 186 (742)
T TIGR01823 155 PLCLTEDEE-GI--ILMSAQTKKKPWFGVQYHPES 186 (742)
T ss_pred EEEEEEcCC-CC--eEEEEEEcCCceEEEEeCccc
Confidence 345554432 23 899999999999999999995
No 59
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.80 E-value=8.4e-19 Score=152.13 Aligned_cols=172 Identities=16% Similarity=0.203 Sum_probs=102.9
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCc-c--chHH
Q 023716 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDG-L--YYAI 138 (278)
Q Consensus 62 vIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p-~--~~~~ 138 (278)
.|||+.-.+. ...|+ .++.++++..|..+.++..... +.++++|+||||||+.... . +...
T Consensus 2 ~i~vl~~~~~----------~~e~~-~~~~~~l~~~g~~~~~~~~~~~-----~~l~~~d~iii~GG~~~~~~~~~~~~~ 65 (200)
T PRK13527 2 KIGVLALQGD----------VEEHI-DALKRALDELGIDGEVVEVRRP-----GDLPDCDALIIPGGESTTIGRLMKREG 65 (200)
T ss_pred EEEEEEECCc----------cHHHH-HHHHHHHHhcCCCeEEEEeCCh-----HHhccCCEEEECCCcHHHHHHHHhhcc
Confidence 3788876543 23443 4677899999987776665432 2356899999999975211 1 1111
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCcccccccccccccccccceecccc------c-CCcccccCchhH
Q 023716 139 VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTS------I-EGTVFQRFPPKL 211 (278)
Q Consensus 139 ~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~------~-~~~lf~~~p~~l 211 (278)
..+.++.+++.+ +|+||||.|+|+|+.++||.. +.......-...+.....+.. . ...+|.+
T Consensus 66 ~~~~i~~~~~~~-----~pilGIC~G~Qll~~~~gg~~-v~~~~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~~----- 134 (200)
T PRK13527 66 ILDEIKEKIEEG-----LPILGTCAGLILLAKEVGDDR-VTKTEQPLLGLMDVTVKRNAFGRQRDSFEAEIDLSG----- 134 (200)
T ss_pred HHHHHHHHHHCC-----CeEEEECHHHHHHHhhhcCCc-cCCCCCceeeeeEEEEeeccccCccccEEEeEeccc-----
Confidence 245666666667 999999999999999998841 111000000111111111000 0 0111222
Q ss_pred HHhhCCccEEEEEEeeecCccchhhhccCCCCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 212 IKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 212 ~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
+.+...++.+|++ .+..+|++++++|++.| + +.+++ ..++||+|||||.
T Consensus 135 ---~~~~~~~~~~H~~--------~v~~lp~~~~~la~~~~--~---~~a~~--~~~~~g~QfHPE~ 183 (200)
T PRK13527 135 ---LDGPFHAVFIRAP--------AITKVGGDVEVLAKLDD--R---IVAVE--QGNVLATAFHPEL 183 (200)
T ss_pred ---cCCcceEEEEccc--------cccccCCCeEEEEEECC--E---EEEEE--ECCEEEEEeCCCC
Confidence 2233355667774 44578999999999865 4 34665 3579999999994
No 60
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.80 E-value=1.4e-18 Score=150.78 Aligned_cols=157 Identities=19% Similarity=0.167 Sum_probs=92.5
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCC--ccchHHHHHHHHHHHHhcCCCCCCcEEEEechH
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKD--GLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~--p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~ 165 (278)
.++.++++.+|+.+.+++ +.+ .++.+|||||+||.... ..+....++.++.+++++ +|+||||+|+
T Consensus 14 ~~~~~~l~~~G~~~~~~~---~~~----~~~~~d~iii~G~~~~~~~~~~~~~~~~~i~~~~~~~-----~PilgIC~G~ 81 (200)
T PRK13143 14 RSVSKALERAGAEVVITS---DPE----EILDADGIVLPGVGAFGAAMENLSPLRDVILEAARSG-----KPFLGICLGM 81 (200)
T ss_pred HHHHHHHHHCCCeEEEEC---CHH----HHccCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHcC-----CCEEEECHHH
Confidence 678999999999988875 222 35689999999975421 112223457777788878 9999999999
Q ss_pred HHHHHHH-hCcc-cccccccccc------c-ccccceec-ccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchh
Q 023716 166 ELLTMII-SKDK-NILESFNAAD------Q-ASTLQFME-NTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLR 235 (278)
Q Consensus 166 QlL~~~~-Gg~~-~il~~~~~~~------~-~~~l~~~~-~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~ 235 (278)
|+|+.++ +|+. .-+..+.... . .....+.. .....+. +.+.+ .....+.+|++.+
T Consensus 82 q~l~~~~~~g~~~~~lg~~~g~v~~~~~~~~~~~~g~~~v~~~~~~~--------l~~~l-~~~~~~~~Hs~~~------ 146 (200)
T PRK13143 82 QLLFESSEEGGGVRGLGLFPGRVVRFPAGVKVPHMGWNTVKVVKDCP--------LFEGI-DGEYVYFVHSYYA------ 146 (200)
T ss_pred HHHhhhhccCCCCCCcceeeEEEEEcCCCCCCCeecceEEEEcCCCh--------hhccC-CCcEEEEEeeeee------
Confidence 9999763 3320 0000011000 0 00001100 0000222 33333 2234566777643
Q ss_pred hhccCCCCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 236 KNLDLSRFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 236 ~~~~L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
.+++.+.++|++.| +..++.+++ +.|+||+|||||+
T Consensus 147 ---~~~~~~~~la~~~~--~~~~~~~~~--~~~~~gvQfHPE~ 182 (200)
T PRK13143 147 ---YPDDEDYVVATTDY--GIEFPAAVC--NDNVFGTQFHPEK 182 (200)
T ss_pred ---CCCCcceEEEEEcC--CCEEEEEEE--cCCEEEEeCCCcc
Confidence 24456889999865 544555554 4599999999996
No 61
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=99.79 E-value=1.7e-18 Score=151.38 Aligned_cols=160 Identities=21% Similarity=0.217 Sum_probs=91.9
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHHH----HHHHHHHHHhcCCCCCCcEEEEec
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIV----EKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~----~~li~~al~~~~~g~~~PVLGICl 163 (278)
.+++++++.+|+.+.++.. ++ .++.+|+||+||+...++...... ...++.+++++ +|+||||+
T Consensus 15 ~sl~~al~~~g~~v~vv~~---~~----~l~~~d~iIlPG~g~~~~~~~~l~~~gl~~~i~~~~~~~-----~pvlGICl 82 (210)
T CHL00188 15 HSVSRAIQQAGQQPCIINS---ES----ELAQVHALVLPGVGSFDLAMKKLEKKGLITPIKKWIAEG-----NPFIGICL 82 (210)
T ss_pred HHHHHHHHHcCCcEEEEcC---HH----HhhhCCEEEECCCCchHHHHHHHHHCCHHHHHHHHHHcC-----CCEEEECH
Confidence 5788999999999998853 22 245799999999765332221111 13344445556 99999999
Q ss_pred hHHHHHHHHhCc-ccccccccc------cc--------cccccceecccccCCcccccCchhHHHhhCCccEEEEEEeee
Q 023716 164 GFELLTMIISKD-KNILESFNA------AD--------QASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYG 228 (278)
Q Consensus 164 G~QlL~~~~Gg~-~~il~~~~~------~~--------~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~ 228 (278)
|||+|+...++. ..-+.-++. ++ ++.++.++.+ + ..+-++.+.+.+.+...++++|++.
T Consensus 83 G~Qll~~~~~~~~~~glg~~~G~v~~~~~~~~~~~p~~Gw~~v~~~~~---~---~~~~~~~lf~~l~~~~~v~~~HS~~ 156 (210)
T CHL00188 83 GLHLLFETSEEGKEEGLGIYKGQVKRLKHSPVKVIPHMGWNRLECQNS---E---CQNSEWVNWKAWPLNPWAYFVHSYG 156 (210)
T ss_pred HHHHHhhccccCCcCCccceeEEEEECCCCCCCccCccCCccceecCC---c---ccccCChhhcCCCCCCEEEEeCccE
Confidence 999999876543 111111111 01 1111111110 0 0000012444455566789999985
Q ss_pred cCccchhhhccCCCCcEEEEEEccCCC-CeEEEEEEeCCCcEEEEeecCCC
Q 023716 229 ISPETLRKNLDLSRFFKMLTTSADEDN-KVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 229 i~~~~~~~~~~L~~~~~vlA~s~D~~g-~~~ieaie~~~~pi~GvQfHPEk 278 (278)
+.| +..+.++.+..+ + ..++++++. .+++|+|||||+
T Consensus 157 v~p----------~~~~~l~~t~~~-~~~~~v~a~~~--~~i~GvQFHPE~ 194 (210)
T CHL00188 157 VMP----------KSQACATTTTFY-GKQQMVAAIEY--DNIFAMQFHPEK 194 (210)
T ss_pred ecC----------CCCceEEEEEec-CCcceEEEEec--CCEEEEecCCcc
Confidence 532 233334443221 2 228999984 489999999996
No 62
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.79 E-value=1.2e-18 Score=151.68 Aligned_cols=154 Identities=21% Similarity=0.217 Sum_probs=92.6
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchH-H---HHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYA-I---VEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~-~---~~~li~~al~~~~~g~~~PVLGICl 163 (278)
..+++.|++.|+.+.++.. ++ .++.+||||+|||...+..... . ...+++.+++.+ +|+||||+
T Consensus 13 ~~i~~~l~~~G~~v~~~~~---~~----~l~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~pvlGIC~ 80 (205)
T PRK13141 13 RSVEKALERLGAEAVITSD---PE----EILAADGVILPGVGAFPDAMANLRERGLDEVIKEAVASG-----KPLLGICL 80 (205)
T ss_pred HHHHHHHHHCCCeEEEECC---HH----HhccCCEEEECCCCchHHHHHHHHHcChHHHHHHHHHCC-----CcEEEECH
Confidence 5688999999999888742 22 3567999999997542222111 1 235556666677 99999999
Q ss_pred hHHHHHHHHhC--cccccccccc--------------cccccccceecccccCCcccccCchhHHHhhCCccEEEEEEee
Q 023716 164 GFELLTMIISK--DKNILESFNA--------------ADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHY 227 (278)
Q Consensus 164 G~QlL~~~~Gg--~~~il~~~~~--------------~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~ 227 (278)
|+|+|+....+ .+..+..++. |.+...+..+ . ++. +.+.+++...++.+|++
T Consensus 81 G~Qll~~~~~~~~~~~~lg~l~g~v~~~~~~~~~~~~~~g~~~i~~~---~-~~~--------l~~~l~~~~~v~~~Hs~ 148 (205)
T PRK13141 81 GMQLLFESSEEFGETEGLGLLPGRVRRFPPEEGLKVPHMGWNQLELK---K-ESP--------LLKGIPDGAYVYFVHSY 148 (205)
T ss_pred HHHHhhhccccCCCCCccceEEEEEEEcCCCCCCcccEecCccceeC---C-CCh--------hhhCCCCCCEEEEECee
Confidence 99999997421 1101110110 1011111110 0 233 44444444466778887
Q ss_pred ecCccchhhhccCCCCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 228 GISPETLRKNLDLSRFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 228 ~i~~~~~~~~~~L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
.+ .+++++.++|.+.+ +. .++++.. +.++||||||||+
T Consensus 149 ~v---------~~~~~~~v~a~~~~--~~-~~~a~~~-~~~i~GvQfHPE~ 186 (205)
T PRK13141 149 YA---------DPCDEEYVAATTDY--GV-EFPAAVG-KDNVFGAQFHPEK 186 (205)
T ss_pred Ee---------ccCCcCeEEEEEeC--Cc-EEEEEEe-cCCEEEEeCCCcc
Confidence 54 24567889998854 43 3555543 5589999999995
No 63
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=99.78 E-value=2.7e-18 Score=147.06 Aligned_cols=165 Identities=19% Similarity=0.274 Sum_probs=99.3
Q ss_pred EEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCcc-c--hHHH
Q 023716 63 IGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGL-Y--YAIV 139 (278)
Q Consensus 63 IGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~-~--~~~~ 139 (278)
|||++..++. ....+++++.|+.++.+... + .++.+||||++||...... . ....
T Consensus 1 igvl~~qg~~---------------~e~~~~l~~~g~~v~~v~~~---~----~l~~~dgiii~Gg~~~~~~~~~~~~~~ 58 (183)
T cd01749 1 IGVLALQGDF---------------REHIRALERLGVEVIEVRTP---E----DLEGIDGLIIPGGESTTIGKLLRRTGL 58 (183)
T ss_pred CEEEEecCCc---------------HHHHHHHHHCCCeEEEECCH---H----HhccCCEEEECCchHHHHHHHHHhCCH
Confidence 6888876532 23448999999999988642 1 2678999999999762110 0 0012
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCc--ccccccccccccccccceecccccCCcccccCchh-HHHhhC
Q 023716 140 EKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKD--KNILESFNAADQASTLQFMENTSIEGTVFQRFPPK-LIKKLS 216 (278)
Q Consensus 140 ~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~--~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~-l~~~l~ 216 (278)
.+.++.+++++ +|+||||.|+|+|+.++++. ..-+.-++.. ...+ . .++....+... .....+
T Consensus 59 ~~~i~~~~~~g-----~PvlGiC~G~qlL~~~~~~~~~~~glG~~~~~-------v~~~-~-~g~~~g~~~~~l~~~~~~ 124 (183)
T cd01749 59 LDPLREFIRAG-----KPVFGTCAGLILLAKEVEDQGGQPLLGLLDIT-------VRRN-A-FGRQVDSFEADLDIPGLG 124 (183)
T ss_pred HHHHHHHHHcC-----CeEEEECHHHHHHHHHhcccCCCCccCceeEE-------EEee-c-cccccceEEEcCCCCcCC
Confidence 35566677777 99999999999999999874 1111111100 0000 0 00000000000 011111
Q ss_pred -CccEEEEEEeeecCccchhhhccCCCCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 217 -TDCLVMQNHHYGISPETLRKNLDLSRFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 217 -~~~~~~~~H~~~i~~~~~~~~~~L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
+....+..|. +.+..+|++++++|.+. + .+.+++.. ++||+|||||.
T Consensus 125 ~~~~~~~~~h~--------~~v~~~p~~~~~la~~~---~--~~~a~~~~--~~~g~qfHPE~ 172 (183)
T cd01749 125 LGPFPAVFIRA--------PVIEEVGPGVEVLAEYD---G--KIVAVRQG--NVLATSFHPEL 172 (183)
T ss_pred CCccEEEEEEC--------cEEEEcCCCcEEEEecC---C--EEEEEEEC--CEEEEEcCCcc
Confidence 2334566777 45667999999999984 3 45577743 69999999994
No 64
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=99.77 E-value=3.9e-18 Score=150.85 Aligned_cols=180 Identities=16% Similarity=0.240 Sum_probs=107.4
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCc-c---ch-
Q 023716 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDG-L---YY- 136 (278)
Q Consensus 62 vIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p-~---~~- 136 (278)
.|+|+..++..+ ..+++++++++|+.+.++++... .++.+|+||||||..... . ..
T Consensus 2 ~v~Vl~~~G~n~-------------~~~~~~al~~~G~~~~~i~~~~~------~l~~~d~lilpGG~~~~d~~~~~~~~ 62 (227)
T TIGR01737 2 KVAVIRFPGTNC-------------DRDTVYALRLLGVDAEIVWYEDG------SLPDYDGVVLPGGFSYGDYLRAGAIA 62 (227)
T ss_pred eEEEEeCCCcCc-------------HHHHHHHHHHCCCeEEEEecCCC------CCCCCCEEEECCCCcccccccccchh
Confidence 588998875432 24567999999999999976532 167899999999975211 1 11
Q ss_pred --HHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH--HhCcccccccccccccccccceecccccCCcccccCchhHH
Q 023716 137 --AIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI--ISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLI 212 (278)
Q Consensus 137 --~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~--~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~ 212 (278)
....++++.+.+.+ +||+|||.|+|+|+.+ ++|+ +......+.......+... ...+.+|+.++.
T Consensus 63 ~~~~~~~~l~~~~~~g-----~pvlgIC~G~QlLa~~GlL~G~--l~~n~~~~~~~~~~~~~v~-~~~~~~~~~~~~--- 131 (227)
T TIGR01737 63 AASPIMQEVREFAEKG-----VPVLGICNGFQILVEAGLLPGA--LLPNDSLRFICRWVYLRVE-NADTIFTKNYKK--- 131 (227)
T ss_pred cchHHHHHHHHHHHcC-----CEEEEECHHHHHHHHcCCCCCc--eeecCCCceEEEeEEEEEC-CCCChhhccCCC---
Confidence 11235566666666 9999999999999995 6665 2111111111111111111 102233333321
Q ss_pred HhhCCccEEE---E-EEeeecCccchhhhccCCCCcEEEEEEcc----------CCC-CeEEEEEEeCCCcEEEEeecCC
Q 023716 213 KKLSTDCLVM---Q-NHHYGISPETLRKNLDLSRFFKMLTTSAD----------EDN-KVYVSTVQAYDYPVTAFQWHPE 277 (278)
Q Consensus 213 ~~l~~~~~~~---~-~H~~~i~~~~~~~~~~L~~~~~vlA~s~D----------~~g-~~~ieaie~~~~pi~GvQfHPE 277 (278)
...+.+ + .++|.++++.+ .+|.+..+|+....| .+| ...|++|++++++++|+|||||
T Consensus 132 ----g~~~~~pi~H~eG~y~~~~~~l---~~l~~~~~i~~~y~d~~g~~~~~~npngs~~~i~~i~~~~~~~~g~~~HpE 204 (227)
T TIGR01737 132 ----GEVIRIPIAHGEGRYYADDETL---ARLESNDQVVFRYCDEDGDVAEEANPNGSVGNIAGIVNERGNVLGMMPHPE 204 (227)
T ss_pred ----CCEEEEEeEcCCcCeEcCHHHH---HHHHHCCcEEEEEECCCCCCCCCCCCCCCHHHHcccCCCCCCEEEEecCch
Confidence 111111 1 13444544433 456667777766655 344 3478899999999999999999
Q ss_pred C
Q 023716 278 V 278 (278)
Q Consensus 278 k 278 (278)
|
T Consensus 205 ~ 205 (227)
T TIGR01737 205 R 205 (227)
T ss_pred h
Confidence 7
No 65
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=99.77 E-value=8.9e-18 Score=158.92 Aligned_cols=194 Identities=23% Similarity=0.346 Sum_probs=120.1
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCC----eEEEEeCCCCh---hhHHHhcccCCEEEEcCCCCCCc
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGA----RVIPLIYNEPE---DVLFEKLELVNGVLYTGGWAKDG 133 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga----~~v~i~~~~~~---~~l~~~l~~iDGlIl~GG~~~~p 133 (278)
-.||+++-.-+ -.++| .|.+++|..+|+ .+-+...++.. ++.....+.+||+++|||.....
T Consensus 289 v~IalVGKYv~---------l~DaY--~Sv~EAL~hag~~~~~~v~i~wIdse~le~~~~~~~~~~~dgIlVPGGFG~RG 357 (533)
T COG0504 289 VTIALVGKYVE---------LPDAY--KSVIEALKHAGIALGVKVNIKWIDSEDLEEENAAELEKLVDGILVPGGFGYRG 357 (533)
T ss_pred eEEEEEECCcC---------chhHH--HHHHHHHHhhhhhcCCceeeEEEccccccccchhhhhhcCCEEEeCCCCCcCc
Confidence 56999976532 34666 478889988774 34444444321 11122222399999999987432
Q ss_pred cchHHHH-HHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCcc-ccc----ccccccccccccceecc---c-ccCCcc
Q 023716 134 LYYAIVE-KVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDK-NIL----ESFNAADQASTLQFMEN---T-SIEGTV 203 (278)
Q Consensus 134 ~~~~~~~-~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~~-~il----~~~~~~~~~~~l~~~~~---~-~~~~~l 203 (278)
. +.+ ..+++|.+++ +|+||||+|||+..+.+.-++ .+. .+++......-+.+.+. + ..+++|
T Consensus 358 ~---eGkI~Ai~yAREn~-----iP~lGIClGmQ~aviE~ARnv~Gl~~AnS~Efdp~t~~pVv~l~~eq~~~~~lGGTm 429 (533)
T COG0504 358 V---EGKIAAIRYARENN-----IPFLGICLGMQLAVIEFARNVLGLEGANSTEFDPDTKYPVVDLMPEQKDVVDLGGTM 429 (533)
T ss_pred h---HHHHHHHHHHHhcC-----CCEEEEchhHHHHHHHHHHHhcCCccCcccccCCCCCCceEEeccccccCCcCCcee
Confidence 2 223 6789999999 999999999999999876542 111 11221111001111111 1 124454
Q ss_pred ccc------CchhHHHh-hCCccE-EEEEEeeecCccchhhhccCCCCcEEEEEEccCCCCeEEEEEEeCCCcE-EEEee
Q 023716 204 FQR------FPPKLIKK-LSTDCL-VMQNHHYGISPETLRKNLDLSRFFKMLTTSADEDNKVYVSTVQAYDYPV-TAFQW 274 (278)
Q Consensus 204 f~~------~p~~l~~~-l~~~~~-~~~~H~~~i~~~~~~~~~~L~~~~~vlA~s~D~~g~~~ieaie~~~~pi-~GvQf 274 (278)
.-+ .+..++.. ++.+.+ .-+.|+|.++++..+... ..++++.++|.| |. .+|+||.+++|+ +|+||
T Consensus 430 RLG~y~~~l~~gT~a~~lY~~~~v~ERHRHRYEvN~~y~~~le--~~Gl~~sg~s~d--~~-lvEivE~~~hpfFv~~Qf 504 (533)
T COG0504 430 RLGAYPCRLKPGTLAAKLYGKDEIYERHRHRYEVNNDYRDQLE--KAGLVFSGTSPD--GG-LVEIVELPDHPFFVATQF 504 (533)
T ss_pred eccceeeecCCCcHHHHHhCCCeeeeeccchhhcCHHHHHHHH--hCCeEEEEEcCC--CC-eEEEEEcCCCceEEEEcc
Confidence 322 13334444 444332 336788989988765443 467999999987 44 999999999995 99999
Q ss_pred cCCC
Q 023716 275 HPEV 278 (278)
Q Consensus 275 HPEk 278 (278)
|||.
T Consensus 505 HPEf 508 (533)
T COG0504 505 HPEF 508 (533)
T ss_pred cccc
Confidence 9994
No 66
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=99.76 E-value=2.3e-17 Score=141.51 Aligned_cols=165 Identities=16% Similarity=0.314 Sum_probs=97.1
Q ss_pred EEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCC-ccchH--HH
Q 023716 63 IGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKD-GLYYA--IV 139 (278)
Q Consensus 63 IGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~-p~~~~--~~ 139 (278)
|||+.-.++. .+..++++++|+.+..+.. ++ .++.+|+|+||||.... ..... ..
T Consensus 2 igvl~~qg~~---------------~e~~~~l~~~g~~~~~v~~---~~----~l~~~d~liipGG~~~~~~~l~~~~~l 59 (184)
T TIGR03800 2 IGVLALQGAV---------------REHARALEALGVEGVEVKR---PE----QLDEIDGLIIPGGESTTLSRLLDKYGM 59 (184)
T ss_pred EEEEEccCCH---------------HHHHHHHHHCCCEEEEECC---hH----HhccCCEEEECCCCHHHHHHHHHhccH
Confidence 8888876531 3566999999999988853 22 26789999999996521 00001 12
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCcc-cccccccccccccccceecccccCCcccccCchhH-HHhhCC
Q 023716 140 EKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDK-NILESFNAADQASTLQFMENTSIEGTVFQRFPPKL-IKKLST 217 (278)
Q Consensus 140 ~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~~-~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l-~~~l~~ 217 (278)
...++.+++++ +|+||||.|+|+|+..+.+.. ..+..++......+ +...+ ++ |. ..+ .+.+.+
T Consensus 60 ~~~i~~~~~~g-----~pilGIC~G~qlL~~~~~~~~~~~lg~~~~~v~~~~--~g~~~--~s--~~---~~l~~~~~~~ 125 (184)
T TIGR03800 60 FEPLRNFILSG-----LPVFGTCAGLIMLAKEIIGQKEGYLGLLDMTVERNA--YGRQV--DS--FE---AEVDIKGVGD 125 (184)
T ss_pred HHHHHHHHHcC-----CcEEEECHHHHHHHhhhccCCCCccCcEEEEEEeec--cCCcc--cc--EE---EEeecccCCC
Confidence 34566667777 999999999999999874321 00110000000000 00000 00 00 000 011111
Q ss_pred c-cEEEEEEeeecCccchhhhccCCCCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 218 D-CLVMQNHHYGISPETLRKNLDLSRFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 218 ~-~~~~~~H~~~i~~~~~~~~~~L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
+ -.....|. +.+.++|++++++|++.+ .+++++. .++||+|||||+
T Consensus 126 ~~~~~~~~h~--------~~v~~lp~~~~vla~~~~-----~~~a~~~--~~~~gvQfHPE~ 172 (184)
T TIGR03800 126 DPITGVFIRA--------PKIVSVGNGVEILAKVGN-----RIVAVRQ--GNILVSSFHPEL 172 (184)
T ss_pred CcceEEEEcC--------CCcccCCCCeEEEEEeCC-----eeEEEEe--CCEEEEEeCCcc
Confidence 1 13345566 566789999999999853 4677763 369999999995
No 67
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=99.76 E-value=1.4e-17 Score=144.14 Aligned_cols=164 Identities=15% Similarity=0.137 Sum_probs=91.2
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccc--hHH--HHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLY--YAI--VEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~--~~~--~~~li~~al~~~~~g~~~PVLGICl 163 (278)
.+..+.++..|+.+.+++.+ + .++.+|+||+||+......+ ... .+.+++.+++.+ +||||||.
T Consensus 12 ~~l~~~l~~~g~~v~v~~~~---~----~l~~~d~lii~G~~~~~~~~~~l~~~~~~~l~~~~~~~~-----~pvlGiC~ 79 (196)
T TIGR01855 12 GSVKRALKRVGAEPVVVKDS---K----EAELADKLILPGVGAFGAAMARLRENGLDLFVELVVRLG-----KPVLGICL 79 (196)
T ss_pred HHHHHHHHHCCCcEEEEcCH---H----HhccCCEEEECCCCCHHHHHHHHHHcCcHHHHHHHHhCC-----CCEEEECH
Confidence 46778999999998888732 2 25689999999965421111 111 124446666777 99999999
Q ss_pred hHHHHHHHH--hCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCC
Q 023716 164 GFELLTMII--SKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLS 241 (278)
Q Consensus 164 G~QlL~~~~--Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~ 241 (278)
|+|+|+.++ |++..-+.-++......+.....+.. ...+-....+.+.+.+++...++++|++.+.+ .+
T Consensus 80 G~Qll~~~~~~~~~~~glg~~~~~v~~~~~~~~~~~g-~~~~~~~~~~~l~~~l~~~~~v~~~Hs~~v~~--------~~ 150 (196)
T TIGR01855 80 GMQLLFERSEEGGGVPGLGLIKGNVVKLEARKVPHMG-WNEVHPVKESPLLNGIDEGAYFYFVHSYYAVC--------EE 150 (196)
T ss_pred HHHHhhhccccCCCCCCcceeeEEEEECCCCCCCccc-CeeeeeCCCChHHhCCCCCCEEEEECeeEecC--------CC
Confidence 999999984 22211111111100000000000000 00000011223455555566788999986632 22
Q ss_pred CCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 242 RFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 242 ~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
. .+++.+.+ |..+.+.++ +.++||+|||||+
T Consensus 151 -~-~~~a~~~~--g~~~~~~~~--~~~i~GvQFHPE~ 181 (196)
T TIGR01855 151 -E-AVLAYADY--GEKFPAAVQ--KGNIFGTQFHPEK 181 (196)
T ss_pred -C-cEEEEEcC--CcEEEEEEe--cCCEEEEECCCcc
Confidence 2 35666644 554555555 5679999999996
No 68
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.75 E-value=3e-17 Score=143.57 Aligned_cols=74 Identities=19% Similarity=0.268 Sum_probs=53.5
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHH----HHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAI----VEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~----~~~li~~al~~~~~g~~~PVLGICl 163 (278)
.|.+++++..|..++.+. +.+ .++.+|+||+||+......+... ....++.+++++ +|+||||+
T Consensus 13 ~s~~~al~~~~~~~~~~~---~~~----~l~~~d~iIlPG~g~~~~~~~~l~~~gl~~~i~~~~~~~-----~pilGiC~ 80 (210)
T PRK14004 13 HSCLKAVSLYTKDFVFTS---DPE----TIENSKALILPGDGHFDKAMENLNSTGLRSTIDKHVESG-----KPLFGICI 80 (210)
T ss_pred HHHHHHHHHcCCeEEEEC---CHH----HhccCCEEEECCCCchHHHHHHHHHcCcHHHHHHHHHcC-----CCEEEECH
Confidence 678899999999888763 333 24689999999997643322211 124445555666 99999999
Q ss_pred hHHHHHHHHh
Q 023716 164 GFELLTMIIS 173 (278)
Q Consensus 164 G~QlL~~~~G 173 (278)
|||+|+...+
T Consensus 81 G~Q~l~~~~~ 90 (210)
T PRK14004 81 GFQILFESSE 90 (210)
T ss_pred hHHHHHHhcc
Confidence 9999999864
No 69
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=99.74 E-value=2.8e-17 Score=135.53 Aligned_cols=178 Identities=18% Similarity=0.277 Sum_probs=118.7
Q ss_pred CCCCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHH-HHcCCeEEEEeCCC-ChhhHHHhcccCCEEEEcCCCCCCc
Q 023716 56 KLNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFV-ESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDG 133 (278)
Q Consensus 56 ~~~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~l-e~~Ga~~v~i~~~~-~~~~l~~~l~~iDGlIl~GG~~~~p 133 (278)
....+|+|-|-.. +||.- ..+++| -+.|+.+.+.+.|+ +.+++++ ...++|+|+.|+. .|
T Consensus 15 ~~~n~piv~IDNY--------------DSFT~-Nv~qYL~~e~g~~~~VyRNDeiTV~El~~--~NP~~LliSPGPG-~P 76 (223)
T KOG0026|consen 15 SKQNGPIIVIDNY--------------DSFTY-NLCQYLMGELGCHFEVYRNDELTVEELKR--KNPRGLLISPGPG-TP 76 (223)
T ss_pred ccccCCEEEEecc--------------cchhH-HHHHHhhhccCccEEEEecCcccHHHHhh--cCCCeEEecCCCC-CC
Confidence 3456788876432 23322 244555 67899998888775 4455553 3789999999887 33
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCccccccccc-ccccccccceecccccCCcccccCchhHH
Q 023716 134 LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFN-AADQASTLQFMENTSIEGTVFQRFPPKLI 212 (278)
Q Consensus 134 ~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~~~il~~~~-~~~~~~~l~~~~~~~~~~~lf~~~p~~l~ 212 (278)
.--+...+-+.+ + +..+|+||||.|.|.|..++||++.. ..|. -|...+++++.... ...+|+++|..+
T Consensus 77 ~DsGIs~~~i~~-f-----~~~iP~fGvCMGlQCi~e~fGGkv~~-a~~~i~HGK~S~i~~D~~~--~~G~f~g~~q~~- 146 (223)
T KOG0026|consen 77 QDSGISLQTVLE-L-----GPLVPLFGVCMGLQCIGEAFGGKIVR-SPFGVMHGKSSMVHYDEKG--EEGLFSGLSNPF- 146 (223)
T ss_pred ccccchHHHHHH-h-----CCCCceeeeehhhhhhhhhhCcEEec-cCcceeeccccccccCCcc--ccccccCCCCCe-
Confidence 322222222221 1 23399999999999999999998532 2222 35555566543211 245777776543
Q ss_pred HhhCCccEEEEEEeeecCccchhhhccCC-CCcEEEEEEccCCCCeEEEEEEeCCCc-EEEEeecCCC
Q 023716 213 KKLSTDCLVMQNHHYGISPETLRKNLDLS-RFFKMLTTSADEDNKVYVSTVQAYDYP-VTAFQWHPEV 278 (278)
Q Consensus 213 ~~l~~~~~~~~~H~~~i~~~~~~~~~~L~-~~~~vlA~s~D~~g~~~ieaie~~~~p-i~GvQfHPEk 278 (278)
.+-..|+.... ..++| +.++|+|+++| | +|++.+|++|. +-|||||||.
T Consensus 147 -------~V~RYHSLa~~------~sSlP~d~L~VTawTEn--G--~iMgaRHkKY~~ieGVQfHPES 197 (223)
T KOG0026|consen 147 -------IVGRYHSLVIE------KDSFPSDELEVTAWTED--G--LVMAARHRKYKHIQGVQFHPES 197 (223)
T ss_pred -------EEEeeeeeeee------cccCCccceeeeEeccC--c--EEEeeeccccccccceeecchh
Confidence 55677887643 34677 88999999987 8 99999999997 9999999994
No 70
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.73 E-value=4.6e-17 Score=140.12 Aligned_cols=156 Identities=13% Similarity=0.135 Sum_probs=88.1
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHHHH-HHHHHHHHhcCCCCCCcEEEEechHH
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVE-KVFKKILEKNDAGDHFPLYAHCLGFE 166 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~-~li~~al~~~~~g~~~PVLGIClG~Q 166 (278)
.+.++++++.|+.++.+. +++ .++++|+|||||+...........+ .+.+...++ ..+|+||||+|||
T Consensus 13 ~s~~~al~~~g~~~~~v~---~~~----~l~~~D~lIlPG~g~~~~~~~~L~~~gl~~~i~~~----~g~PvlGIClGmQ 81 (192)
T PRK13142 13 SNVKRAIEHLGYEVVVSN---TSK----IIDQAETIILPGVGHFKDAMSEIKRLNLNAILAKN----TDKKMIGICLGMQ 81 (192)
T ss_pred HHHHHHHHHcCCCEEEEe---CHH----HhccCCEEEECCCCCHHHHHHHHHHCCcHHHHHHh----CCCeEEEECHHHH
Confidence 678999999999998875 233 2567999999999763222221111 222222221 1399999999999
Q ss_pred HHHHHH-hCccccccccccccccc--ccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCCCC
Q 023716 167 LLTMII-SKDKNILESFNAADQAS--TLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRF 243 (278)
Q Consensus 167 lL~~~~-Gg~~~il~~~~~~~~~~--~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~~ 243 (278)
+|+... .|...-+.-++.+.... .+. .+|+. ++.+.. +.++. +..+|+.|+|.+. .++
T Consensus 82 lL~~~~~eg~~~GLgll~~~V~rf~~~~~-vph~G-Wn~~~~--~~~l~-----~~~~yFVhSy~v~---------~~~- 142 (192)
T PRK13142 82 LMYEHSDEGDASGLGFIPGNISRIQTEYP-VPHLG-WNNLVS--KHPML-----NQDVYFVHSYQAP---------MSE- 142 (192)
T ss_pred HHhhhcccCCcCccCceeEEEEECCCCCC-CCccc-ccccCC--CCccc-----ccEEEEECCCeEC---------CCC-
Confidence 999875 23222222222111111 111 12221 222211 11111 1357899998651 122
Q ss_pred cEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 244 FKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 244 ~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
.+++++.- |..++.+++ +.+++|+||||||
T Consensus 143 -~v~~~~~y--g~~~~~~v~--~~n~~g~QFHPEk 172 (192)
T PRK13142 143 -NVIAYAQY--GADIPAIVQ--FNNYIGIQFHPEK 172 (192)
T ss_pred -CEEEEEEC--CCeEEEEEE--cCCEEEEecCccc
Confidence 34555542 444888887 5679999999997
No 71
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.68 E-value=1.7e-15 Score=148.59 Aligned_cols=179 Identities=15% Similarity=0.178 Sum_probs=100.1
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccc--h
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLY--Y 136 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~--~ 136 (278)
..+.|+|+..-.. + ..+..++++..|+.+..+.. ++ .++.+|+||||||.+....+ .
T Consensus 5 ~~~~i~iiDyG~G---------N-----~~sl~~al~~~G~~v~~v~~---~~----~l~~~D~lIlpG~gs~~~~m~~L 63 (538)
T PLN02617 5 ADSEVTLLDYGAG---------N-----VRSVRNAIRHLGFTIKDVQT---PE----DILNADRLIFPGVGAFGSAMDVL 63 (538)
T ss_pred CCCeEEEEECCCC---------C-----HHHHHHHHHHCCCeEEEECC---hh----hhccCCEEEECCCCCHHHHHHHH
Confidence 4577888764321 1 25788999999999987752 22 36789999999987632221 1
Q ss_pred HH--HHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHH--hCcccccccccc----cccccccceecccccCCcccccCc
Q 023716 137 AI--VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMII--SKDKNILESFNA----ADQASTLQFMENTSIEGTVFQRFP 208 (278)
Q Consensus 137 ~~--~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~--Gg~~~il~~~~~----~~~~~~l~~~~~~~~~~~lf~~~p 208 (278)
.. ..+.++.+++.+ +|+||||+|||+|+..+ +|...-+..++. ......+.. +|+. +..+-..-.
T Consensus 64 ~~~gl~~~i~~~i~~g-----~PvLGIC~G~QlLa~~~~E~g~~~glg~l~G~v~~~~~~~~~~v-p~iG-w~~V~~~~~ 136 (538)
T PLN02617 64 NNRGMAEALREYIQND-----RPFLGICLGLQLLFESSEENGPVEGLGVIPGVVGRFDSSNGLRV-PHIG-WNALQITKD 136 (538)
T ss_pred HHcCHHHHHHHHHHcC-----CCEEEECHHHHHHhhhhhhcCCccCcccccceEEECCccCCCCC-Ceec-ceEEEecCC
Confidence 11 234566667767 99999999999999875 222111111111 000000000 0100 011100001
Q ss_pred hhHHHhhCCccEEEEEEeeecCccchhhhccCCC-CcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 209 PKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSR-FFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 209 ~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~-~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
+.+.+.+. +..++++|+|.+ ..++. ...+++++...++ ++++|+. .++||+|||||+
T Consensus 137 spL~~~l~-~~~vy~vHSy~v--------~~~p~~~~~v~a~~~~g~~--~IaAI~~--gnI~GVQFHPE~ 194 (538)
T PLN02617 137 SELLDGVG-GRHVYFVHSYRA--------TPSDENKDWVLATCNYGGE--FIASVRK--GNVHAVQFHPEK 194 (538)
T ss_pred ChhHhcCC-CcEEEEEeEEEE--------EecCCCCcEEEEEEccCCC--cEEEEEe--CCEEEEEcCCcc
Confidence 22444443 235778899843 22333 3345555543233 8999985 379999999996
No 72
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=99.64 E-value=2.6e-15 Score=140.21 Aligned_cols=196 Identities=22% Similarity=0.355 Sum_probs=121.5
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCC----eEEEEeCCC----------Ch---hhHHHhcccCC
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGA----RVIPLIYNE----------PE---DVLFEKLELVN 121 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga----~~v~i~~~~----------~~---~~l~~~l~~iD 121 (278)
..-.|+++.-.- .-.++| .|.+|+|+.++. ...+...++ ++ ....++++.+|
T Consensus 297 ~~V~IalVGKYt---------~l~DsY--~Sv~KAL~Ha~~~~~~kl~i~wi~s~dLE~~t~~e~~~~~~~aW~~l~~ad 365 (585)
T KOG2387|consen 297 VPVRIALVGKYT---------KLSDSY--LSVVKALEHAALAINRKLEIVWIDSSDLEPETEQEDPRKYHAAWQKLKSAD 365 (585)
T ss_pred CcEEEEEEeccc---------cchHHH--HHHHHHHHHHHHHhcccceEEEEehhcccccccccChhHHHHHHHHhccCC
Confidence 335688887542 234677 588999988653 222222222 11 12345788999
Q ss_pred EEEEcCCCCCCccchHHH-HHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCcc-cc----cccccccccccccceec
Q 023716 122 GVLYTGGWAKDGLYYAIV-EKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDK-NI----LESFNAADQASTLQFME 195 (278)
Q Consensus 122 GlIl~GG~~~~p~~~~~~-~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~~-~i----l~~~~~~~~~~~l~~~~ 195 (278)
||++|||.+...- +. -...+||.+++ +|.||||+|||+-.+.|.-+. .+ .++|+.+....-+-+.+
T Consensus 366 GilvPGGFG~RGv---eG~i~Aak~ARen~-----iP~LGiCLGmQ~AvIEfaRnvLg~~dAnStEF~p~~~~~vVi~MP 437 (585)
T KOG2387|consen 366 GILVPGGFGDRGV---EGKILAAKWARENK-----IPFLGICLGMQLAVIEFARNVLGLKDANSTEFDPETKNPVVIFMP 437 (585)
T ss_pred eEEeCCcccccch---hHHHHHHHHHHhcC-----CCeEeeehhhhHHHHHHHHHhhCCCCCCccccCCCCCCcEEEECc
Confidence 9999999874322 22 25678888888 999999999999888776541 11 11222211110111111
Q ss_pred -c--------ccc--CCcccccCchhHHHhhCCccEE--EEEEeeecCccchhhhccCCCCcEEEEEEccCCCCeEEEEE
Q 023716 196 -N--------TSI--EGTVFQRFPPKLIKKLSTDCLV--MQNHHYGISPETLRKNLDLSRFFKMLTTSADEDNKVYVSTV 262 (278)
Q Consensus 196 -~--------~~~--~~~lf~~~p~~l~~~l~~~~~~--~~~H~~~i~~~~~~~~~~L~~~~~vlA~s~D~~g~~~ieai 262 (278)
+ .+. ..+.|+.-.+.+.+.+++...+ -+.|+|.++|+..... ...++..++.+.+ |+ -++.+
T Consensus 438 E~~~~~mGgtMRLG~R~t~f~~~~s~~~kLYG~~~~V~ERHRHRyEVNP~~v~~l--e~~Gl~FvGkd~~--g~-rmeI~ 512 (585)
T KOG2387|consen 438 EHNKTHMGGTMRLGSRRTVFQDKDSKLRKLYGNVEFVDERHRHRYEVNPEMVKQL--EQAGLSFVGKDVT--GK-RMEII 512 (585)
T ss_pred CCCcccccceeeecccceeeecCchHHHHHhCCchhhhhhhhcceecCHHHHHHH--HhcCcEEEeecCC--Cc-EEEEE
Confidence 1 111 2345665555566656653332 3678898998765432 3468888898876 65 78999
Q ss_pred EeCCCcE-EEEeecCCC
Q 023716 263 QAYDYPV-TAFQWHPEV 278 (278)
Q Consensus 263 e~~~~pi-~GvQfHPEk 278 (278)
|.+++|+ .|+|||||.
T Consensus 513 El~~HP~fVg~QfHPE~ 529 (585)
T KOG2387|consen 513 ELESHPFFVGVQFHPEF 529 (585)
T ss_pred EcCCCCceeeeccCHHH
Confidence 9999995 999999993
No 73
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=99.64 E-value=4.2e-15 Score=132.50 Aligned_cols=82 Identities=17% Similarity=0.361 Sum_probs=58.4
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHH---
Q 023716 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAI--- 138 (278)
Q Consensus 62 vIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~--- 138 (278)
.|||++..++- .+..++|+++|+.++.+.. .+ .+..+||||||||.+. .+...
T Consensus 3 ~igVLa~qG~~---------------~e~~~aL~~lG~ev~~v~~---~~----~L~~~DgLILPGGfs~--~~~~L~~~ 58 (248)
T PLN02832 3 AIGVLALQGSF---------------NEHIAALRRLGVEAVEVRK---PE----QLEGVSGLIIPGGEST--TMAKLAER 58 (248)
T ss_pred EEEEEeCCCch---------------HHHHHHHHHCCCcEEEeCC---HH----HhccCCEEEeCCCHHH--HHHHHHhh
Confidence 69999987642 4567999999999988753 22 3678999999998651 11111
Q ss_pred --HHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHH
Q 023716 139 --VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMII 172 (278)
Q Consensus 139 --~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~ 172 (278)
..+.++.+++++ +|+||||.|||+|+...
T Consensus 59 ~gl~~~I~~~v~~g-----~PvLGiC~GmqlLa~~~ 89 (248)
T PLN02832 59 HNLFPALREFVKSG-----KPVWGTCAGLIFLAERA 89 (248)
T ss_pred cchHHHHHHHHHcC-----CCEEEEChhHHHHHHHh
Confidence 123334444556 99999999999999875
No 74
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=4.4e-15 Score=141.22 Aligned_cols=171 Identities=16% Similarity=0.284 Sum_probs=107.1
Q ss_pred CchhhhHHHHHHHHHH-cCCeEEEEeCC-CChhhHHHhccc---CCEEEEcCCCCCC--ccchHHHHHHHHHHHHhcCCC
Q 023716 81 TNASYIAASYVKFVES-AGARVIPLIYN-EPEDVLFEKLEL---VNGVLYTGGWAKD--GLYYAIVEKVFKKILEKNDAG 153 (278)
Q Consensus 81 ~~~~yi~~syv~~le~-~Ga~~v~i~~~-~~~~~l~~~l~~---iDGlIl~GG~~~~--p~~~~~~~~li~~al~~~~~g 153 (278)
.++||..+ .++.++. .|.-+|++..+ -.-++.-..+.+ +|++++..|+... +.+.+...++++. .+
T Consensus 22 ~YDSyTfN-iy~ll~~~~~vp~V~~vh~~~~~~d~~~~l~q~~~FDaIVVgPGPG~P~~a~d~gI~~rl~~~---~~--- 94 (767)
T KOG1224|consen 22 NYDSYTFN-IYQLLSTINGVPPVVIVHDEWTWEDAYHYLYQDVAFDAIVVGPGPGSPMCAADIGICLRLLLE---CR--- 94 (767)
T ss_pred cccchhhh-HHHHHHHhcCCCcEEEEeccccCHHHHHHHhhccccceEEecCCCCCCCcHHHHHHHHHHHHh---cC---
Confidence 34666554 5567765 45544544333 333334444444 9999998887732 3444443344433 23
Q ss_pred CCCcEEEEechHHHHHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccc
Q 023716 154 DHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPET 233 (278)
Q Consensus 154 ~~~PVLGIClG~QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~ 233 (278)
.+||||||+|||.|+.+-|.++. ......|++...+.+. +.-+|.++++. .+.....+.+|+..+.
T Consensus 95 -~iPilGICLGfQal~l~hGA~v~-~~n~p~HGrvs~i~~~-----~~~~f~gi~sg----~~~~fK~~RYHSL~in--- 160 (767)
T KOG1224|consen 95 -DIPILGICLGFQALGLVHGAHVV-HANEPVHGRVSGIEHD-----GNILFSGIPSG----RNSDFKVVRYHSLIIN--- 160 (767)
T ss_pred -CCceeeeehhhHhHhhhccccee-cCCCcccceeeeEEec-----CcEEEccCCCC----CcccceeEEeEEEEec---
Confidence 39999999999999999999853 2223345444444332 34455555431 1233456778887554
Q ss_pred hhhhccCC-CCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 234 LRKNLDLS-RFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 234 ~~~~~~L~-~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
.+| +-+.+++++.|.+|. +++.|.+++.|-||+|||||.
T Consensus 161 -----~~pid~l~il~t~~ddng~-ilMsi~~~~fPhfG~qyHPES 200 (767)
T KOG1224|consen 161 -----SLPIDLLPILWTIYDDNGH-ILMSIMHSSFPHFGLQYHPES 200 (767)
T ss_pred -----CCchhhhcceeEeecCCce-EEEEeeccCCCccceeeChHH
Confidence 344 346788888887775 889999999999999999994
No 75
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.61 E-value=4.5e-15 Score=148.26 Aligned_cols=151 Identities=22% Similarity=0.377 Sum_probs=108.0
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHH
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFEL 167 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~Ql 167 (278)
..-+++|.+.|+++.++|++.+.++ ...|||+|++|+. +|......-.-+++.++.+ .||+|||+|+|+
T Consensus 184 ~N~IRcL~~RGa~vtVvPw~~~i~~-----~~yDGlflSNGPG-dPe~~~~~v~~vr~lL~~~-----~PvfGIClGHQl 252 (1435)
T KOG0370|consen 184 YNQIRCLVKRGAEVTVVPWDYPIAK-----EEYDGLFLSNGPG-DPELCPLLVQNVRELLESN-----VPVFGICLGHQL 252 (1435)
T ss_pred HHHHHHHHHhCceEEEecCCccccc-----cccceEEEeCCCC-CchhhHHHHHHHHHHHhCC-----CCeEEEehhhHH
Confidence 4578999999999999999876542 2789999999998 5665544445556666666 999999999999
Q ss_pred HHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCCCCcEEE
Q 023716 168 LTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKML 247 (278)
Q Consensus 168 L~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~~~~vl 247 (278)
|+.+.|++. +.-.+..+.+..|.... . .+ .-.++-++|.|.+.+. .||.+++.+
T Consensus 253 lA~AaGakT-~KmKyGNRGhNiP~~~~---~-tG---------------rc~ITSQNHGYAVD~~------tLp~gWk~l 306 (1435)
T KOG0370|consen 253 LALAAGAKT-YKMKYGNRGHNIPCTCR---A-TG---------------RCFITSQNHGYAVDPA------TLPAGWKPL 306 (1435)
T ss_pred HHHhhCCce-EEeeccccCCCccceec---c-Cc---------------eEEEEecCCceeeccc------cccCCCchh
Confidence 999999983 11123322222221100 0 11 1125678899988664 467888888
Q ss_pred EEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 248 TTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 248 A~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
-++.. || --|.|.|...|++.+|||||-
T Consensus 307 FvN~N-Dg--SNEGI~Hss~P~fSvQFHPEa 334 (1435)
T KOG0370|consen 307 FVNAN-DG--SNEGIMHSSKPFFSVQFHPEA 334 (1435)
T ss_pred eeecc-cC--CCceEecCCCCceeeecCCcC
Confidence 87753 35 578999999999999999993
No 76
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=99.59 E-value=1.2e-15 Score=142.67 Aligned_cols=149 Identities=18% Similarity=0.287 Sum_probs=99.5
Q ss_pred HHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCC----CccchHHHHHHHHHHHHhcCCCCCCcEEEEechHH
Q 023716 91 VKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK----DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFE 166 (278)
Q Consensus 91 v~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~----~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~Q 166 (278)
-+.+++.-....++|.+.+...+.+ ...-||||+||+.. +..+++. .++ +-+ +||||||+|||
T Consensus 33 ~RrvRel~v~se~~p~~t~~~~i~~--~~~rgiIiSGGP~SVya~dAP~~dp--~if----~~~-----vpvLGICYGmQ 99 (552)
T KOG1622|consen 33 DRRVRELNVQSEILPLTTPAKTITE--YGPRGIIISGGPNSVYAEDAPSFDP--AIF----ELG-----VPVLGICYGMQ 99 (552)
T ss_pred HHHHHHHhhhhhhccCCChhhhhhc--CCceEEEEeCCCCccccCcCCCCCh--hHh----ccC-----CcceeehhHHH
Confidence 3567777777888898877665554 47899999999861 2222222 344 346 99999999999
Q ss_pred HHHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccE--EEEEEeeecCccchhhhccCCCCc
Q 023716 167 LLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCL--VMQNHHYGISPETLRKNLDLSRFF 244 (278)
Q Consensus 167 lL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~--~~~~H~~~i~~~~~~~~~~L~~~~ 244 (278)
+||-.+||++ ......+.+...+.... ...+|+++. .... ++-+|. +.+.+++++|
T Consensus 100 ~i~~~~Gg~V--~~~~~RE~G~~eI~v~~----~~~lF~~~~--------~~~~~~VlltHg--------dsl~~v~~g~ 157 (552)
T KOG1622|consen 100 LINKLNGGTV--VKGMVREDGEDEIEVDD----SVDLFSGLH--------KTEFMTVLLTHG--------DSLSKVPEGF 157 (552)
T ss_pred HHHHHhCCcc--ccccccCCCCceEEcCc----hhhhhhhhc--------ccceeeeeeccc--------cchhhccccc
Confidence 9999999983 22222222222221110 223444332 2222 455677 5667899999
Q ss_pred EEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 245 KMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 245 ~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
++.|++.. . .+.++.+...++||+|||||.
T Consensus 158 kv~a~s~n--~--~va~i~~e~kkiyglqfhpEV 187 (552)
T KOG1622|consen 158 KVVAFSGN--K--PVAGILNELKKIYGLQFHPEV 187 (552)
T ss_pred eeEEeecC--c--ceeeehhhhhhhhcCCCCCcc
Confidence 99999953 3 578888888899999999994
No 77
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.57 E-value=4.8e-14 Score=124.10 Aligned_cols=90 Identities=22% Similarity=0.411 Sum_probs=63.5
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHH-HcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCc-----cc
Q 023716 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVE-SAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDG-----LY 135 (278)
Q Consensus 62 vIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le-~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p-----~~ 135 (278)
.|+|+..|+..+ ..+..++++ .+|+.+..++.+.. .++.+|+|+||||..... ..
T Consensus 2 ~v~Vl~~~G~n~-------------~~d~~~a~~~~~G~~~~~v~~~~~------~l~~~D~lvipGG~~~~d~l~~~~~ 62 (219)
T PRK03619 2 KVAVIVFPGSNC-------------DRDMARALRDLLGAEPEYVWHKET------DLDGVDAVVLPGGFSYGDYLRCGAI 62 (219)
T ss_pred EEEEEecCCcCh-------------HHHHHHHHHhcCCCeEEEEecCcC------CCCCCCEEEECCCCchhhhhccchh
Confidence 589998886432 245678898 89999888865431 367899999999965211 11
Q ss_pred --hHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH--HhCc
Q 023716 136 --YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI--ISKD 175 (278)
Q Consensus 136 --~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~--~Gg~ 175 (278)
.....++++.+.+++ +|++|||.|+|+|+.+ ++|+
T Consensus 63 ~~~~~~~~~l~~~~~~g-----~~ilgIC~G~qlLa~~GLL~g~ 101 (219)
T PRK03619 63 AAFSPIMKAVKEFAEKG-----KPVLGICNGFQILTEAGLLPGA 101 (219)
T ss_pred hhchHHHHHHHHHHHCC-----CEEEEECHHHHHHHHcCCCCCe
Confidence 122335566666666 9999999999999996 5665
No 78
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=99.55 E-value=3.8e-14 Score=129.69 Aligned_cols=135 Identities=14% Similarity=0.154 Sum_probs=89.4
Q ss_pred ccCCEEEEcCCCCC-----CccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCcccc-ccccccccccccc
Q 023716 118 ELVNGVLYTGGWAK-----DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNI-LESFNAADQASTL 191 (278)
Q Consensus 118 ~~iDGlIl~GG~~~-----~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~~~i-l~~~~~~~~~~~l 191 (278)
+.+||+|+||.+.. +-.|+.+..++++++.+.. +|+||||.|+|+++.++||.... +.. ...+....
T Consensus 98 ~~~DG~IITGAp~e~~~fedv~YW~El~~i~~w~~~~~-----~s~LgICwGaQa~a~algGi~k~~~~~--K~~Gv~~~ 170 (302)
T PRK05368 98 EKFDGLIITGAPVEQLPFEDVDYWDELKEILDWAKTHV-----TSTLFICWAAQAALYHLYGIPKYTLPE--KLSGVFEH 170 (302)
T ss_pred CCCCEEEEcCCCCCCccCCCCchHHHHHHHHHHHHHcC-----CCEEEEcHHHHHHHHHcCCCccCCCCC--ceeEEEEE
Confidence 57899999999853 4567777889999999887 99999999999999999994111 110 00000000
Q ss_pred ceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCCCCcEEEEEEccCCCCeEEEEEEeCCCcEEE
Q 023716 192 QFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKMLTTSADEDNKVYVSTVQAYDYPVTA 271 (278)
Q Consensus 192 ~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~G 271 (278)
... .. .+.++.+++ +...+-++|+..|..+. -.++++++|+|.|.. +| +.++..++..+++
T Consensus 171 ~~~--~~-~~pL~~g~~--------d~F~~phSr~~~V~~~~----i~~~~~l~vLA~S~~-~g---v~~~~~~~~r~~~ 231 (302)
T PRK05368 171 RVL--DP-HHPLLRGFD--------DSFLVPHSRYTEVREED----IRAATGLEILAESEE-AG---VYLFASKDKREVF 231 (302)
T ss_pred EEc--CC-CChhhcCCC--------CccccceeehhhccHHH----hccCCCCEEEecCCC-CC---eEEEEeCCCCEEE
Confidence 000 01 233444443 33345567765543221 246799999999954 45 6777766778999
Q ss_pred EeecCCC
Q 023716 272 FQWHPEV 278 (278)
Q Consensus 272 vQfHPEk 278 (278)
+|+|||.
T Consensus 232 vQgHPEY 238 (302)
T PRK05368 232 VTGHPEY 238 (302)
T ss_pred EECCCCC
Confidence 9999994
No 79
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=99.52 E-value=8.1e-14 Score=118.62 Aligned_cols=161 Identities=16% Similarity=0.226 Sum_probs=102.3
Q ss_pred HHHHHHHHHcCCeEEEEeCCCC--hhhHHHhcccCCEEEEcCCCCC---CccchHHHHHHHHHHHHhcCCCCCCcEEEEe
Q 023716 88 ASYVKFVESAGARVIPLIYNEP--EDVLFEKLELVNGVLYTGGWAK---DGLYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~--~~~l~~~l~~iDGlIl~GG~~~---~p~~~~~~~~li~~al~~~~~g~~~PVLGIC 162 (278)
..++..+..-|-.--....... ++ .+.|++.||++|+|.... +..|......++++....+ +||+|||
T Consensus 28 nvfvsllg~ege~wd~frV~~gefP~--~~Dl~ky~gfvIsGS~~dAf~d~dWI~KLcs~~kkld~mk-----kkvlGIC 100 (245)
T KOG3179|consen 28 NVFVSLLGDEGEQWDLFRVIDGEFPQ--EEDLEKYDGFVISGSKHDAFSDADWIKKLCSFVKKLDFMK-----KKVLGIC 100 (245)
T ss_pred HHHHHHhcccCceeEEEEEecCCCCC--hhhhhhhceEEEeCCcccccccchHHHHHHHHHHHHHhhc-----cceEEEe
Confidence 4567777777765443322211 11 134778999999998642 3455555667888888888 9999999
Q ss_pred chHHHHHHHHhCcccccccccc-cccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCC
Q 023716 163 LGFELLTMIISKDKNILESFNA-ADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLS 241 (278)
Q Consensus 163 lG~QlL~~~~Gg~~~il~~~~~-~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~ 241 (278)
.|+|+++.+.||++. ....+ +-.-..+........+...|..+|..+ .....|. +.+-.+|
T Consensus 101 FGHQiiara~Gg~Vg--ra~KG~~~~lg~itivk~~~~~~~yFG~~~~~l--------~IikcHq--------Devle~P 162 (245)
T KOG3179|consen 101 FGHQIIARAKGGKVG--RAPKGPDLGLGSITIVKDAEKPEKYFGEIPKSL--------NIIKCHQ--------DEVLELP 162 (245)
T ss_pred ccHHHHHHhhCCccc--cCCCCCcccccceEEEEecccchhhcccchhhh--------hHHhhcc--------cceecCC
Confidence 999999999999842 11111 000011111112122566776555543 1234576 5667899
Q ss_pred CCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 242 RFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 242 ~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
++++++|.|.+. -++.+. ....++++|-|||.
T Consensus 163 E~a~llasSe~c----eve~fs-~~~~~l~fQGHPEy 194 (245)
T KOG3179|consen 163 EGAELLASSEKC----EVEMFS-IEDHLLCFQGHPEY 194 (245)
T ss_pred chhhhhcccccc----ceEEEE-ecceEEEecCCchh
Confidence 999999999763 256554 45579999999993
No 80
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.43 E-value=4.7e-12 Score=114.18 Aligned_cols=95 Identities=16% Similarity=0.276 Sum_probs=66.8
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCC-Cccch
Q 023716 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK-DGLYY 136 (278)
Q Consensus 58 ~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~-~p~~~ 136 (278)
|+++.|+|+..|+..+. .+..++++++|+.+..+++....+ ....++.+|||+||||... +....
T Consensus 1 ~~~~kvaVl~~pG~n~d-------------~e~~~Al~~aG~~v~~v~~~~~~~-~~~~l~~~DgLvipGGfs~gD~l~~ 66 (261)
T PRK01175 1 MESIRVAVLRMEGTNCE-------------DETVKAFRRLGVEPEYVHINDLAA-ERKSVSDYDCLVIPGGFSAGDYIRA 66 (261)
T ss_pred CCCCEEEEEeCCCCCCH-------------HHHHHHHHHCCCcEEEEeeccccc-cccchhhCCEEEECCCCCccccccc
Confidence 45688999999875431 356789999999999887653221 2234678999999999542 21111
Q ss_pred -----HH----HHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 137 -----AI----VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 137 -----~~----~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
.. ..+.++.+++++ +||||||+|+|+|+.+
T Consensus 67 g~~~~~~l~~~l~~~Ik~f~~~g-----kpVLGICnG~QlLa~~ 105 (261)
T PRK01175 67 GAIFAARLKAVLRKDIEEFIDEG-----YPIIGICNGFQVLVEL 105 (261)
T ss_pred chhhHHHHHHHHHHHHHHHHHCC-----CeEEEECHHHHHHHHC
Confidence 11 225567777777 9999999999999874
No 81
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.39 E-value=3.7e-12 Score=113.49 Aligned_cols=94 Identities=18% Similarity=0.289 Sum_probs=65.9
Q ss_pred EEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccc------h
Q 023716 63 IGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLY------Y 136 (278)
Q Consensus 63 IGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~------~ 136 (278)
|+|+.-|+.++ ..++.++++++|+.+.+++.....+ -...++.+|||+||||....... .
T Consensus 1 v~vl~~pG~n~-------------~~~~~~al~~aG~~v~~v~~~~~~~-~~~~l~~~d~liipGG~~~~d~l~~~~~~~ 66 (238)
T cd01740 1 VAVLRFPGSNC-------------DRDMAYAFELAGFEAEDVWHNDLLA-GRKDLDDYDGVVLPGGFSYGDYLRAGAIAA 66 (238)
T ss_pred CEEEEcCCcCC-------------HHHHHHHHHHcCCCEEEEeccCCcc-ccCCHhhCCEEEECCCCCcccccccccccc
Confidence 46777776543 2468899999999999998754321 12236789999999997521111 0
Q ss_pred -HH-HHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH--HhCc
Q 023716 137 -AI-VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI--ISKD 175 (278)
Q Consensus 137 -~~-~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~--~Gg~ 175 (278)
.. ..++++.+.+++ +||+|||.|+|+|+.+ ++|+
T Consensus 67 ~~~~~~~~l~~~~~~g-----~pvlGIC~G~QlL~~~gll~g~ 104 (238)
T cd01740 67 ASPLLMEEVKEFAERG-----GLVLGICNGFQILVELGLLPGA 104 (238)
T ss_pred cChhHHHHHHHHHhCC-----CeEEEECcHHHHHHHcCCCccc
Confidence 11 346667777766 9999999999999986 6665
No 82
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.34 E-value=4.7e-11 Score=101.54 Aligned_cols=155 Identities=13% Similarity=0.173 Sum_probs=87.6
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCc-cchHH-
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDG-LYYAI- 138 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p-~~~~~- 138 (278)
..|||++-.++. ....+++++.|+.++.+. ++++ ++.+|+||||||....- ...+.
T Consensus 3 ~~igVLalqG~~---------------~Eh~~al~~lG~~v~~v~---~~~~----l~~~D~LILPGG~~t~~~~ll~~~ 60 (179)
T PRK13526 3 QKVGVLAIQGGY---------------QKHADMFKSLGVEVKLVK---FNND----FDSIDRLVIPGGESTTLLNLLNKH 60 (179)
T ss_pred cEEEEEECCccH---------------HHHHHHHHHcCCcEEEEC---CHHH----HhCCCEEEECCChHHHHHHHhhhc
Confidence 569999988642 346789999999877764 3332 67899999999854210 11111
Q ss_pred -HHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCccccccccccc---c--cccccceecccccCCcccccCchhHH
Q 023716 139 -VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAA---D--QASTLQFMENTSIEGTVFQRFPPKLI 212 (278)
Q Consensus 139 -~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~~~il~~~~~~---~--~~~~l~~~~~~~~~~~lf~~~p~~l~ 212 (278)
..+.++... ++ +|+||||.|+|+|+.... .+.-++.. + ....-.|..++.. +
T Consensus 61 ~l~~~Ik~~~-~~-----kpilGICaG~qlL~~~s~----~Lg~idg~V~Rn~~Grq~~sf~~~~~~--------~---- 118 (179)
T PRK13526 61 QIFDKLYNFC-SS-----KPVFGTCAGSIILSKGEG----YLNLLDLEVQRNAYGRQVDSFVADISF--------N---- 118 (179)
T ss_pred CcHHHHHHHH-cC-----CcEEEEcHHHHHHHccCC----CCCCccEEEEEcCCCCccceeeeecCc--------C----
Confidence 123333333 23 799999999999987421 11111110 0 0000011111110 0
Q ss_pred HhhCCccEEEEEEeeecCccchhhhccCCCCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCC
Q 023716 213 KKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPE 277 (278)
Q Consensus 213 ~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPE 277 (278)
.. ....++ -+- ..+.+.+++.+|+|+-. | .+-+++ ..++++.-||||
T Consensus 119 -~~--~~~~vF-iRA-------P~i~~~~~~v~vla~~~---~--~~v~v~--q~~~l~~~FHPE 165 (179)
T PRK13526 119 -DK--NITGVF-IRA-------PKFIVVGNQVDILSKYQ---N--SPVLLR--QANILVSSFHPE 165 (179)
T ss_pred -Cc--eEEEEE-EcC-------ceEeEcCCCcEEEEEEC---C--EEEEEE--ECCEEEEEeCCc
Confidence 00 011111 111 33456788999999884 4 455565 578999999999
No 83
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.32 E-value=5.3e-11 Score=103.58 Aligned_cols=88 Identities=23% Similarity=0.396 Sum_probs=62.1
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcc-cCCEEEEcCCCCC----Ccc
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLE-LVNGVLYTGGWAK----DGL 134 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~-~iDGlIl~GG~~~----~p~ 134 (278)
+|.|+|+.-|+.++. .....+++++|+.++.+.+.+. .+. ++|+|++|||..- ...
T Consensus 2 ~~kvaVi~fpGtN~d-------------~d~~~A~~~aG~~~~~V~~~d~------~~~~~~d~vv~pGGFSyGDyLr~G 62 (231)
T COG0047 2 RPKVAVLRFPGTNCD-------------YDMAAAFERAGFEAEDVWHSDL------LLGRDFDGVVLPGGFSYGDYLRAG 62 (231)
T ss_pred CceEEEEEcCCcCch-------------HHHHHHHHHcCCCceEEEeeec------ccCCCccEEEEcCCCCcccccCcc
Confidence 799999999986542 3466788999999999987543 244 6999999999873 111
Q ss_pred chHHHH---HHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 135 YYAIVE---KVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 135 ~~~~~~---~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
+..... +-++...+++ +|+||||.|||+|..+
T Consensus 63 aiaa~~~v~~~v~~~a~~g-----~~vLGICNGfQiL~e~ 97 (231)
T COG0047 63 AIAAIAPVMDEVREFAEKG-----KPVLGICNGFQILSEA 97 (231)
T ss_pred hHHhhHHHHHHHHHHHHCC-----CeEEEEcchhHHHHHc
Confidence 111222 2333333444 9999999999999953
No 84
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=99.21 E-value=6e-11 Score=108.30 Aligned_cols=162 Identities=17% Similarity=0.239 Sum_probs=92.2
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchH----HHHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYA----IVEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~----~~~~li~~al~~~~~g~~~PVLGICl 163 (278)
+|...+++..|..+..+. ++. .+...|-+||||-+...+.... -..+-+++-++.. +|++|||.
T Consensus 15 ~si~nal~hlg~~i~~v~---~P~----DI~~a~rLIfPGVGnfg~~~D~L~~~Gf~eplr~Yiesg-----kPfmgicv 82 (541)
T KOG0623|consen 15 RSIRNALRHLGFSIKDVQ---TPG----DILNADRLIFPGVGNFGPAMDVLNRTGFAEPLRKYIESG-----KPFMGICV 82 (541)
T ss_pred HHHHHHHHhcCceeeecc---Cch----hhccCceEeecCcccchHHHHHHhhhhhHHHHHHHHhcC-----CCeEeehh
Confidence 577789999999888764 222 1457899999996654332221 1224445556667 99999999
Q ss_pred hHHHHHHHH--hCcc-------cccccccccccccc-cceecc-cccCCcccccCchhHHHhhCCccEEEEEEeeecCcc
Q 023716 164 GFELLTMII--SKDK-------NILESFNAADQAST-LQFMEN-TSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPE 232 (278)
Q Consensus 164 G~QlL~~~~--Gg~~-------~il~~~~~~~~~~~-l~~~~~-~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~ 232 (278)
|.|+|..-. .+.. .+...|+......| +.|..- +..++.+|...|. ...|+.|+|-.. +
T Consensus 83 GlQaLF~gSvE~p~skGLgvipg~v~RFD~s~k~VPhIGWNsc~v~sd~effg~~p~---------~~~YFVHSyl~~-e 152 (541)
T KOG0623|consen 83 GLQALFDGSVENPPSKGLGVIPGIVGRFDASAKIVPHIGWNSCQVGSDSEFFGDVPN---------RHVYFVHSYLNR-E 152 (541)
T ss_pred hHHHHhcccccCCCcCcccccccceecccCCCCcCCcccccccccCCcccccccCCC---------ceEEEEeeeccc-c
Confidence 999985421 1110 11222332211111 122111 1112333333332 357888998432 2
Q ss_pred chhhhccC-CCCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 233 TLRKNLDL-SRFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 233 ~~~~~~~L-~~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
. -..+ +++|++...... .++||++|. +.+++++||||||
T Consensus 153 k---~~~len~~wkiat~kYG--~E~Fi~ai~--knN~~AtQFHPEK 192 (541)
T KOG0623|consen 153 K---PKSLENKDWKIATCKYG--SESFISAIR--KNNVHATQFHPEK 192 (541)
T ss_pred c---ccCCCCCCceEeeeccC--cHHHHHHHh--cCceeeEeccccc
Confidence 1 1133 456776444321 256999986 5679999999997
No 85
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=99.15 E-value=1.4e-09 Score=91.83 Aligned_cols=85 Identities=25% Similarity=0.474 Sum_probs=58.4
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcC-CeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCC-ccchHH-
Q 023716 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAG-ARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKD-GLYYAI- 138 (278)
Q Consensus 62 vIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~G-a~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~-p~~~~~- 138 (278)
.|||++-.++ -...++.++++| +.++.+.. ++ .|+.+||||||||.+.. ....+.
T Consensus 2 ~IGVLalQG~---------------v~EH~~~l~~~~~~e~~~Vk~---~~----dL~~~d~LIiPGGESTTi~rL~~~~ 59 (194)
T COG0311 2 KIGVLALQGA---------------VEEHLEALEKAGGAEVVEVKR---PE----DLEGVDGLIIPGGESTTIGRLLKRY 59 (194)
T ss_pred eEEEEEeccc---------------HHHHHHHHHhhcCCceEEEcC---HH----HhccCcEEEecCccHHHHHHHHHHc
Confidence 6899987653 246788999995 98888863 22 47789999999998721 111111
Q ss_pred -HHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHh
Q 023716 139 -VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIIS 173 (278)
Q Consensus 139 -~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~G 173 (278)
..+-++..++.+ +|+||+|-||-+|+.-.-
T Consensus 60 gl~e~l~~~~~~G-----~Pv~GTCAGlIlLakei~ 90 (194)
T COG0311 60 GLLEPLREFIADG-----LPVFGTCAGLILLAKEIL 90 (194)
T ss_pred CcHHHHHHHHHcC-----CceEEechhhhhhhhhhc
Confidence 013334444556 999999999999996543
No 86
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=98.93 E-value=1.5e-09 Score=97.75 Aligned_cols=93 Identities=20% Similarity=0.350 Sum_probs=57.2
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCC-----cc
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKD-----GL 134 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~-----p~ 134 (278)
||.++|+.-|+.++ ......+++.+|+.+..+..+.--+ -+..++++|+|+||||.... ..
T Consensus 1 kpkV~Vl~~pGtNc-------------e~e~~~A~~~aG~~~~~v~~~dl~~-~~~~l~~~~~lvipGGFS~gD~l~sg~ 66 (259)
T PF13507_consen 1 KPKVAVLRFPGTNC-------------ERETAAAFENAGFEPEIVHINDLLS-GESDLDDFDGLVIPGGFSYGDYLRSGA 66 (259)
T ss_dssp --EEEEEE-TTEEE-------------HHHHHHHHHCTT-EEEEEECCHHHT-TS--GCC-SEEEE-EE-GGGGTTSTTH
T ss_pred CCEEEEEECCCCCC-------------HHHHHHHHHHcCCCceEEEEEeccc-ccCchhhCcEEEECCccCccccchHHH
Confidence 68999999997644 2567789999999999987643100 01258899999999997621 11
Q ss_pred ch-HH------HHHHHHHHHHh-cCCCCCCcEEEEechHHHHHHH
Q 023716 135 YY-AI------VEKVFKKILEK-NDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 135 ~~-~~------~~~li~~al~~-~~~g~~~PVLGIClG~QlL~~~ 171 (278)
.. .. ..+-++..+++ + .|+||||.|||+|...
T Consensus 67 ~~a~~~~~~~~~~~~i~~f~~~~g-----~~vLGIcNGfQiL~~~ 106 (259)
T PF13507_consen 67 IAAARLLFNSPLMDAIREFLERPG-----GFVLGICNGFQILVEL 106 (259)
T ss_dssp HHHHHHCCSCCCHHHHHHHHHCTT------EEEEECHHHHHHCCC
T ss_pred HHHHHhhccHHHHHHHHHHHhcCC-----CeEEEEchHhHHHHHh
Confidence 11 11 13445555565 5 9999999999999764
No 87
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=98.91 E-value=1.5e-09 Score=92.43 Aligned_cols=74 Identities=24% Similarity=0.460 Sum_probs=46.2
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCC-cc---chHHHHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKD-GL---YYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~-p~---~~~~~~~li~~al~~~~~g~~~PVLGICl 163 (278)
...++.|+++|+.++.+.. .+ .|+.+||||||||.... .. .++..+.+-+++.+.+ +||||+|-
T Consensus 9 ~EH~~~l~~lg~~~~~Vr~---~~----dL~~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~-----~Pv~GTCA 76 (188)
T PF01174_consen 9 REHIRMLERLGAEVVEVRT---PE----DLEGLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGS-----KPVWGTCA 76 (188)
T ss_dssp HHHHHHHHHTTSEEEEE-S---GG----GGTT-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT-------EEEEETH
T ss_pred HHHHHHHHHcCCCeEEeCC---HH----HHccCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCC-----CceeehhH
Confidence 4677899999999988863 33 36789999999998621 01 1111234444444445 89999999
Q ss_pred hHHHHHHHHh
Q 023716 164 GFELLTMIIS 173 (278)
Q Consensus 164 G~QlL~~~~G 173 (278)
||-+|+....
T Consensus 77 GlIlLa~~v~ 86 (188)
T PF01174_consen 77 GLILLAKEVE 86 (188)
T ss_dssp HHHHHEEEEC
T ss_pred HHHHhhhhhh
Confidence 9999976543
No 88
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=98.77 E-value=1.7e-07 Score=99.55 Aligned_cols=96 Identities=20% Similarity=0.369 Sum_probs=65.4
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCC--------ChhhHHHhcccCCEEEEcCCC
Q 023716 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE--------PEDVLFEKLELVNGVLYTGGW 129 (278)
Q Consensus 58 ~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~--------~~~~l~~~l~~iDGlIl~GG~ 129 (278)
..||.++|+.-|+.++. .....+++++|+.+..+..+. +.+.+...++.+++|++|||.
T Consensus 975 ~~kpkvaIl~~pGtNce-------------~d~a~Af~~aG~~~~~v~~~dl~~~~i~~s~~~~~~~l~~~~~l~~pGGF 1041 (1239)
T TIGR01857 975 VEKPRVVIPVFPGTNSE-------------YDSAKAFEKEGAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGF 1041 (1239)
T ss_pred CCCCeEEEEECCCCCCH-------------HHHHHHHHHcCCceEEEEEecCcccccccchhhhhcccccCcEEEEcCcc
Confidence 46899999999987652 356678889999988776543 122233447899999999997
Q ss_pred CCCc------cchHH------HHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 130 AKDG------LYYAI------VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 130 ~~~p------~~~~~------~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
.... .+... .++-++..++++ .++||||.|||+|...
T Consensus 1042 SyGD~l~~~~~~~aa~~~n~~~~~~~~~f~~~d-----~~~LGICNGfQ~L~~l 1090 (1239)
T TIGR01857 1042 SAGDEPDGSAKFIAAILRNPKVRVAIDSFLARD-----GLILGICNGFQALVKS 1090 (1239)
T ss_pred CcccccchhHHHHHHHhhChHHHHHHHHHHhCC-----CcEEEechHHHHHHHc
Confidence 6311 11111 123333444444 9999999999999774
No 89
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=98.66 E-value=6.2e-08 Score=83.69 Aligned_cols=74 Identities=15% Similarity=0.126 Sum_probs=54.4
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchH----HHHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYA----IVEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~----~~~~li~~al~~~~~g~~~PVLGICl 163 (278)
.++.++++..|++++.+....+ ++.+|+|+||||......... ..++.++.+++++ +||||||.
T Consensus 13 ~~l~~~~~~~G~~~~~~~~~~~-------~~~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g-----~pvlgiC~ 80 (194)
T cd01750 13 TDLDPLAREPGVDVRYVEVPEG-------LGDADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAG-----GPVLGICG 80 (194)
T ss_pred HHHHHHHhcCCceEEEEeCCCC-------CCCCCEEEECCCcchHHHHHHHHHcCHHHHHHHHHHCC-----CcEEEECH
Confidence 5677888999999999875433 567899999999863222111 1235566666667 99999999
Q ss_pred hHHHHHHHHh
Q 023716 164 GFELLTMIIS 173 (278)
Q Consensus 164 G~QlL~~~~G 173 (278)
|||+|+..+.
T Consensus 81 G~qlL~~~~~ 90 (194)
T cd01750 81 GYQMLGKYIV 90 (194)
T ss_pred HHHHhhhhcc
Confidence 9999998763
No 90
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=98.64 E-value=1.9e-07 Score=100.25 Aligned_cols=93 Identities=15% Similarity=0.233 Sum_probs=61.8
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchH
Q 023716 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYA 137 (278)
Q Consensus 58 ~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~ 137 (278)
..||.++|+.-|+.++. .....+++.+|+.+..+....-.+. ...|+.++||++|||.... .+.+
T Consensus 1053 ~~~p~vail~~pG~N~~-------------~e~~~Af~~aGf~~~~v~~~dl~~~-~~~l~~~~~lv~~GGFSyg-D~lg 1117 (1310)
T TIGR01735 1053 GVRPKVAILREQGVNGD-------------REMAAAFDRAGFEAWDVHMSDLLAG-RVHLDEFRGLAACGGFSYG-DVLG 1117 (1310)
T ss_pred CCCceEEEEECCCCCCH-------------HHHHHHHHHhCCCcEEEEEeccccC-CcchhheeEEEEcCCCCCc-cchh
Confidence 45799999999986542 4566789999999888875431110 1136789999999997631 1111
Q ss_pred H-------------HHHHHHHHHHhcCCCCCCcEEEEechHHHHH
Q 023716 138 I-------------VEKVFKKILEKNDAGDHFPLYAHCLGFELLT 169 (278)
Q Consensus 138 ~-------------~~~li~~al~~~~~g~~~PVLGIClG~QlL~ 169 (278)
. .++-++..+. .++.++||||.|||+|.
T Consensus 1118 sg~~~a~~i~~~~~~~~~~~~f~~----~~d~~~LGiCNGfQ~L~ 1158 (1310)
T TIGR01735 1118 AGKGWAKSILFNPRLRDQFQAFFK----RPDTFSLGVCNGCQMLS 1158 (1310)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHh----CCCceEEEecHHHHHHH
Confidence 1 1233333332 22399999999999998
No 91
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=98.63 E-value=2.8e-07 Score=76.82 Aligned_cols=54 Identities=15% Similarity=0.265 Sum_probs=34.2
Q ss_pred hcccCCEEEEcCCCCCCccchHH----HHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhC
Q 023716 116 KLELVNGVLYTGGWAKDGLYYAI----VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISK 174 (278)
Q Consensus 116 ~l~~iDGlIl~GG~~~~p~~~~~----~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg 174 (278)
.++++||+|+|||....-..... ...+...+-.-. +|+||+|-||-+|..-+.+
T Consensus 53 D~aq~DaLIIPGGEST~mslia~~tgL~d~L~~fVhn~~-----k~~WGTCAGmI~LS~ql~n 110 (226)
T KOG3210|consen 53 DLAQCDALIIPGGESTAMSLIAERTGLYDDLYAFVHNPS-----KVTWGTCAGMIYLSQQLSN 110 (226)
T ss_pred HHhhCCEEEecCCchhHHHHHHhhhhhHHHHHHHhcCCC-----ccceeechhhhhhhhhhcC
Confidence 47789999999998731111111 113333332333 8999999999999876533
No 92
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.61 E-value=4.6e-07 Score=97.47 Aligned_cols=94 Identities=16% Similarity=0.265 Sum_probs=62.9
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHH
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAI 138 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~ 138 (278)
.+|.++|+.-|+.++. .....+++.+|+.+..+..+.-.+. ...|++++||++|||..... +.+.
T Consensus 1034 ~~pkv~il~~pG~N~~-------------~e~~~Af~~aG~~~~~v~~~dl~~~-~~~l~~~~~l~~~GGFS~gD-~lgs 1098 (1290)
T PRK05297 1034 ARPKVAILREQGVNSH-------------VEMAAAFDRAGFDAIDVHMSDLLAG-RVTLEDFKGLVACGGFSYGD-VLGA 1098 (1290)
T ss_pred CCCeEEEEECCCCCCH-------------HHHHHHHHHcCCCeEEEEeecCcCC-CCChhhCcEEEECCccCCcc-cchH
Confidence 5799999999986542 4566889999999887765431110 12378899999999976321 1121
Q ss_pred -------------HHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 139 -------------VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 139 -------------~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
.++-++..+. .++.++||||.|||+|...
T Consensus 1099 g~~~a~~~~~n~~~~~~~~~f~~----~~d~~~LGiCNGfQ~L~~l 1140 (1290)
T PRK05297 1099 GEGWAKSILFNPRLRDQFEAFFA----RPDTFALGVCNGCQMMSNL 1140 (1290)
T ss_pred HHHHHHHhhccHHHHHHHHHHHh----CCCceEEEEcHHHHHHHHh
Confidence 1222333332 2239999999999999875
No 93
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.61 E-value=5.1e-07 Score=96.57 Aligned_cols=96 Identities=14% Similarity=0.260 Sum_probs=64.5
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCC-----
Q 023716 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKD----- 132 (278)
Q Consensus 58 ~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~----- 132 (278)
..||.++|+.-|+.++. .....+++.+|+.+..+..++-.+. ...|+.++||++|||....
T Consensus 1035 ~~~pkVaVl~~pGtN~~-------------~e~~~Af~~aGf~~~~V~~~dl~~~-~~~L~~~~glv~pGGFSyGD~l~s 1100 (1307)
T PLN03206 1035 TSKPKVAIIREEGSNGD-------------REMAAAFYAAGFEPWDVTMSDLLNG-RISLDDFRGIVFVGGFSYADVLDS 1100 (1307)
T ss_pred CCCCeEEEEECCCCCCH-------------HHHHHHHHHcCCceEEEEeeecccc-cccccceeEEEEcCcCCCccccch
Confidence 45899999999986542 4567889999999887776531111 2247889999999997521
Q ss_pred ccc-hH------HHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 133 GLY-YA------IVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 133 p~~-~~------~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
... .. ..++-++..+++ ++.++||||.|||+|...
T Consensus 1101 g~~wa~~i~~n~~~~~~~~~f~~~----~d~~~LGICNGfQiL~~l 1142 (1307)
T PLN03206 1101 AKGWAGSIRFNEPLLQQFQEFYNR----PDTFSLGVCNGCQLMALL 1142 (1307)
T ss_pred HHHHHHHHHhChHHHHHHHHHHhC----CCceEEEEcHHHHHHHHc
Confidence 100 10 112334444433 239999999999999875
No 94
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=98.60 E-value=1.9e-07 Score=81.01 Aligned_cols=79 Identities=22% Similarity=0.412 Sum_probs=53.5
Q ss_pred hhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCC-ccchHH---HHHHHHHHHHhcCCCCCCcEE
Q 023716 84 SYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKD-GLYYAI---VEKVFKKILEKNDAGDHFPLY 159 (278)
Q Consensus 84 ~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~-p~~~~~---~~~li~~al~~~~~g~~~PVL 159 (278)
++.-....++|+++|++++.+....+. .+..+|+||||||.... ...... ..+.++.+.+++ +||+
T Consensus 10 ~f~y~e~~~~l~~~G~~v~~~s~~~~~-----~l~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g-----~pil 79 (198)
T cd03130 10 NFYYPENLELLEAAGAELVPFSPLKDE-----ELPDADGLYLGGGYPELFAEELSANQSMRESIRAFAESG-----GPIY 79 (198)
T ss_pred ccccHHHHHHHHHCCCEEEEECCCCCC-----CCCCCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcC-----CCEE
Confidence 344466788999999999988642222 24459999999985421 111111 234555556666 9999
Q ss_pred EEechHHHHHHHH
Q 023716 160 AHCLGFELLTMII 172 (278)
Q Consensus 160 GIClG~QlL~~~~ 172 (278)
|||.|||+|....
T Consensus 80 gICgG~qlL~~~~ 92 (198)
T cd03130 80 AECGGLMYLGESL 92 (198)
T ss_pred EEcccHHHHHHHh
Confidence 9999999999865
No 95
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.40 E-value=7.2e-07 Score=86.88 Aligned_cols=72 Identities=19% Similarity=0.271 Sum_probs=45.5
Q ss_pred HHHHHHHHcCC-eEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHH
Q 023716 89 SYVKFVESAGA-RVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFEL 167 (278)
Q Consensus 89 syv~~le~~Ga-~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~Ql 167 (278)
|.+++++..|. .+.++..+ +.+ .+..+|+||||||........ ...+.+...+.+ +||||||.||||
T Consensus 10 sv~~al~~lg~~~~~vv~~~-~~~----~l~~~D~lILPGG~~~~~~~l--~~~l~~~i~~~g-----~pvlGICgG~Qm 77 (476)
T PRK06278 10 GSLPCFENFGNLPTKIIDEN-NIK----EIKDLDGLIIPGGSLVESGSL--TDELKKEILNFD-----GYIIGICSGFQI 77 (476)
T ss_pred hHHHHHHHhcCCCcEEEEeC-ChH----HhccCCEEEECCCchhhcchH--HHHHHHHHHHcC-----CeEEEEcHHHHh
Confidence 45567888886 44443332 332 367899999999854211101 123444333445 999999999999
Q ss_pred HHHHH
Q 023716 168 LTMII 172 (278)
Q Consensus 168 L~~~~ 172 (278)
|+...
T Consensus 78 Lg~~~ 82 (476)
T PRK06278 78 LSEKI 82 (476)
T ss_pred ccccc
Confidence 98764
No 96
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=98.36 E-value=3.5e-06 Score=77.04 Aligned_cols=132 Identities=15% Similarity=0.181 Sum_probs=76.2
Q ss_pred ccCCEEEEcCCCCC-----CccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHH-HHHHHhCcccccc-cccccccccc
Q 023716 118 ELVNGVLYTGGWAK-----DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFEL-LTMIISKDKNILE-SFNAADQAST 190 (278)
Q Consensus 118 ~~iDGlIl~GG~~~-----~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~Ql-L~~~~Gg~~~il~-~~~~~~~~~~ 190 (278)
+.+||+|+||-+.- +-.|+.+..++++++.+.. ++.|.||.|.|. |...+|-....+. ..-+
T Consensus 97 ~~~DglIITGAPvE~l~Fe~V~YW~El~~i~dwa~~~v-----~stl~iCWgAqAaLy~~yGI~K~~l~~KlfG------ 165 (298)
T PF04204_consen 97 RKFDGLIITGAPVEQLPFEEVDYWDELTEIFDWAKTHV-----TSTLFICWGAQAALYHFYGIPKYPLPEKLFG------ 165 (298)
T ss_dssp S-EEEEEE---TTTTS-GGGSTTHHHHHHHHHHHHHHE-----EEEEEETHHHHHHHHHHH----EEEEEEEEE------
T ss_pred CCCCEEEEeCCCcCCCCcccCCcHHHHHHHHHHHHHcC-----CcchhhhHHHHHHHHHHcCCCcccCCCccee------
Confidence 46899999998762 3467888999999999999 999999999999 6666676521111 1100
Q ss_pred cceeccc-ccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCCCCcEEEEEEccCCCCeEEEEEEeCCCcE
Q 023716 191 LQFMENT-SIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKMLTTSADEDNKVYVSTVQAYDYPV 269 (278)
Q Consensus 191 l~~~~~~-~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~~~~vlA~s~D~~g~~~ieaie~~~~pi 269 (278)
-+..++ ...+.|+.+ +.....+=++-+-++..+.+ .-..+++|+|.|.+ .| +..+..++...
T Consensus 166 -Vf~~~~~~~~~pLl~G--------fdd~f~~PhSR~t~i~~~~i----~~~~~L~vLa~s~~-~G---~~l~~~~d~r~ 228 (298)
T PF04204_consen 166 -VFEHRVLDPDHPLLRG--------FDDTFFAPHSRYTEIDRDDI----KKAPGLEVLAESEE-AG---VFLVASKDGRQ 228 (298)
T ss_dssp -EEEEEES-SS-GGGTT----------SEEEEEEEEEEE--HHHH----CT-TTEEEEEEETT-TE---EEEEEECCCTE
T ss_pred -ceeeeccCCCChhhcC--------CCccccCCcccccCCCHHHH----hcCCCcEEEeccCC-cc---eEEEEcCCCCE
Confidence 000010 103444444 33333444665555655433 23578999999964 35 66777778888
Q ss_pred EEEeecCC
Q 023716 270 TAFQWHPE 277 (278)
Q Consensus 270 ~GvQfHPE 277 (278)
+=+|.|||
T Consensus 229 vfi~GH~E 236 (298)
T PF04204_consen 229 VFITGHPE 236 (298)
T ss_dssp EEE-S-TT
T ss_pred EEEeCCCc
Confidence 88999999
No 97
>PHA03366 FGAM-synthase; Provisional
Probab=98.34 E-value=8e-06 Score=88.01 Aligned_cols=95 Identities=16% Similarity=0.213 Sum_probs=64.5
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCc----
Q 023716 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDG---- 133 (278)
Q Consensus 58 ~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p---- 133 (278)
..||.|+|+.-|+.++ ......+++++|+.+..+....-... +.|+.++||+++||.....
T Consensus 1026 ~~~prVaIl~~pG~N~-------------~~e~~~Af~~aGf~~~~v~~~dL~~~--~~l~~f~glv~~GGFS~gD~l~~ 1090 (1304)
T PHA03366 1026 DKRHRVAVLLLPGCPG-------------PHALLAAFTNAGFDPYPVSIEELKDG--TFLDEFSGLVIGGSSGAEDSYTG 1090 (1304)
T ss_pred CCCCeEEEEECCCCCC-------------HHHHHHHHHHcCCceEEEEeecCCCC--CccccceEEEEcCCCCCcccccH
Confidence 4689999999997654 24567889999999888875431110 1178899999999976311
Q ss_pred --cch------HHHHHHHHHHHHhcCCCCCCcEEEEec-hHHHHHHH
Q 023716 134 --LYY------AIVEKVFKKILEKNDAGDHFPLYAHCL-GFELLTMI 171 (278)
Q Consensus 134 --~~~------~~~~~li~~al~~~~~g~~~PVLGICl-G~QlL~~~ 171 (278)
.+. ...++-++..+++. +.++||||. |+|+|...
T Consensus 1091 ~~~~a~~il~n~~~~~~~~~f~~r~----dt~~LGiCN~G~Q~L~~l 1133 (1304)
T PHA03366 1091 ARAAVAALLSNPAVRDALLRFLNRP----DTFSLGCGELGCQILFAL 1133 (1304)
T ss_pred HHHHHHHhhhchHHHHHHHHHHhCC----CCeEEEeCcHHHHHHHHc
Confidence 111 11234444445332 299999998 99999874
No 98
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=98.30 E-value=1.8e-05 Score=84.96 Aligned_cols=95 Identities=16% Similarity=0.190 Sum_probs=63.7
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCC-Cccch
Q 023716 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK-DGLYY 136 (278)
Q Consensus 58 ~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~-~p~~~ 136 (278)
..||.|+|+.-|+.++ ......+++++|+.+..+...+-.+. +.++.++||+++||... ++.-.
T Consensus 927 ~~~p~VaIl~~pG~N~-------------~~e~~~Af~~aGf~~~~v~~~dl~~~--~~l~~f~glv~~Ggfsy~D~lgs 991 (1202)
T TIGR01739 927 DPRHQVAVLLLPGQSV-------------PHGLLAALTNAGFDPRIVSITELKKT--DFLDTFSGLIIGGASGTLDSEVG 991 (1202)
T ss_pred CCCCeEEEEeCCCCCC-------------HHHHHHHHHHcCCceEEEEeccCCCC--CchhheEEEEEcCcCCCCccchH
Confidence 4589999999998654 24567889999999888876541110 12568899999999763 21111
Q ss_pred H-----------HHHHHHHHHHHhcCCCCCCcEEEEec-hHHHHHHH
Q 023716 137 A-----------IVEKVFKKILEKNDAGDHFPLYAHCL-GFELLTMI 171 (278)
Q Consensus 137 ~-----------~~~~li~~al~~~~~g~~~PVLGICl-G~QlL~~~ 171 (278)
+ ..++-++..+++. +.++||||. |||+|...
T Consensus 992 g~~~a~~il~n~~~~~~~~~f~~r~----dtf~LGiCN~G~Q~L~~l 1034 (1202)
T TIGR01739 992 ARALAAALLRNQAFLRDLLTFLNRP----DTFSLGFGELGCQLLLAL 1034 (1202)
T ss_pred HHHHHHHhhcchHHHHHHHHHHhCC----CceEEEeCcHHHHHHHHc
Confidence 1 1223344444332 399999998 99999874
No 99
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=98.21 E-value=1.7e-06 Score=73.56 Aligned_cols=54 Identities=9% Similarity=0.042 Sum_probs=47.4
Q ss_pred cccCCEEEEcCCCCC-----CccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCc
Q 023716 117 LELVNGVLYTGGWAK-----DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKD 175 (278)
Q Consensus 117 l~~iDGlIl~GG~~~-----~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~ 175 (278)
.+..||+|+||.+.- +-.|+++..++++++.++. .|+||||.|+|....+++|-
T Consensus 60 ~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~~~v-----~stl~iCWgaqaal~~~yGi 118 (175)
T cd03131 60 DAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKTHV-----TSTLFSCWAAMAALYYFYGI 118 (175)
T ss_pred ccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHHHhC-----cchHHHHHHHHHHHHHHcCc
Confidence 568999999999862 3467788899999999888 99999999999999999996
No 100
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=98.17 E-value=7.7e-06 Score=61.01 Aligned_cols=76 Identities=21% Similarity=0.229 Sum_probs=54.5
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccc--hHHHHHHHHHHHHhcCCCCCCcEEEEechH
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLY--YAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~--~~~~~~li~~al~~~~~g~~~PVLGIClG~ 165 (278)
..+.+.++++|..+.+++...............|+|++|||....... .....+.++...+++ .|++|+|.|+
T Consensus 15 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~~~~~-----~~i~~~c~g~ 89 (115)
T cd01653 15 ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLARDEALLALLREAAAAG-----KPILGICLGA 89 (115)
T ss_pred HHHHHHHHHCCCeEEEEcCCCCceeccCChhccCEEEECCCCCchhhhccCHHHHHHHHHHHHcC-----CEEEEECchh
Confidence 567789999999999998765431111235689999999998743332 233345666666666 9999999999
Q ss_pred HHH
Q 023716 166 ELL 168 (278)
Q Consensus 166 QlL 168 (278)
|++
T Consensus 90 ~~l 92 (115)
T cd01653 90 QLL 92 (115)
T ss_pred HhH
Confidence 999
No 101
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.14 E-value=1.1e-05 Score=78.47 Aligned_cols=93 Identities=17% Similarity=0.271 Sum_probs=62.3
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCC--Cccch
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK--DGLYY 136 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~--~p~~~ 136 (278)
.++.|||...+-- .|--...++.|++.|++++.+....+. .+..+|+|+||||... ...+.
T Consensus 244 ~~~~iava~d~af------------~f~y~e~~~~L~~~g~~~~~~~~~~~~-----~l~~~D~lilpGG~~~~~~~~l~ 306 (451)
T PRK01077 244 PGVRIAVARDAAF------------NFYYPENLELLRAAGAELVFFSPLADE-----ALPDCDGLYLGGGYPELFAAELA 306 (451)
T ss_pred CCceEEEEecCcc------------cccHHHHHHHHHHCCCEEEEeCCcCCC-----CCCCCCEEEeCCCchhhHHHHHh
Confidence 3468999876521 111245678899999999988643222 2457899999999641 11111
Q ss_pred H--HHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHh
Q 023716 137 A--IVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIIS 173 (278)
Q Consensus 137 ~--~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~G 173 (278)
. ...+.++.+.+++ +||+|||-|+|+|...+-
T Consensus 307 ~~~~~~~~i~~~~~~g-----~~i~aiCgG~~~L~~~i~ 340 (451)
T PRK01077 307 ANTSMRASIRAAAAAG-----KPIYAECGGLMYLGESLE 340 (451)
T ss_pred hCchhHHHHHHHHHcC-----CCEEEEcHHHHHHHhhhc
Confidence 1 1235666666666 999999999999998763
No 102
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=98.05 E-value=2.7e-05 Score=68.16 Aligned_cols=96 Identities=19% Similarity=0.197 Sum_probs=64.6
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHc-CCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccch
Q 023716 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA-GARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYY 136 (278)
Q Consensus 58 ~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~-Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~ 136 (278)
..++.|.+...... ....|+ .++.+++++. |..+..+.... .++..+.+..+|+|+|+||.-. .+.
T Consensus 29 ~~~~~i~~IptAs~---------~~~~~~-~~~~~a~~~l~G~~~~~~~~~~-~~~~~~~l~~ad~I~l~GG~~~--~~~ 95 (212)
T cd03146 29 KARPKVLFVPTASG---------DRDEYT-ARFYAAFESLRGVEVSHLHLFD-TEDPLDALLEADVIYVGGGNTF--NLL 95 (212)
T ss_pred cCCCeEEEECCCCC---------CHHHHH-HHHHHHHhhccCcEEEEEeccC-cccHHHHHhcCCEEEECCchHH--HHH
Confidence 34577888765432 124554 4688999999 99988876433 2334556789999999998431 111
Q ss_pred HH-----HHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 137 AI-----VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 137 ~~-----~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
.. ..++++.+++++ .|++|||.|+|++...
T Consensus 96 ~~l~~~~l~~~l~~~~~~g-----~~i~G~SAGa~i~~~~ 130 (212)
T cd03146 96 AQWREHGLDAILKAALERG-----VVYIGWSAGSNCWFPS 130 (212)
T ss_pred HHHHHcCHHHHHHHHHHCC-----CEEEEECHhHHhhCCC
Confidence 11 235566566666 9999999999999763
No 103
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=98.00 E-value=1.8e-05 Score=72.14 Aligned_cols=132 Identities=15% Similarity=0.184 Sum_probs=80.2
Q ss_pred ccCCEEEEcCCCCC-----CccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHH-HHHHhCccccc-ccccccccccc
Q 023716 118 ELVNGVLYTGGWAK-----DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELL-TMIISKDKNIL-ESFNAADQAST 190 (278)
Q Consensus 118 ~~iDGlIl~GG~~~-----~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL-~~~~Gg~~~il-~~~~~~~~~~~ 190 (278)
+.+||+|+||-+.- +-.|+++..++++++.+.. ...|.||.|.|.- ...+|-....+ +..-+ .
T Consensus 98 ~~fDGlIITGAPvE~l~FeeV~YW~El~~I~dwsk~~v-----~Stl~iCWaAqAaLy~~yGI~K~~l~~KlfG---V-- 167 (300)
T TIGR01001 98 RKFDGLIITGAPVELVPFEDVAYWEELTEIMEWSKHNV-----TSTMFICWAAQAGLKYFYGIPKYTLPEKLSG---V-- 167 (300)
T ss_pred CCCCEEEEcCCCcCCCCcccCCcHHHHHHHHHHHHHcC-----cchHHHHHHHHHHHHHHcCCCccccCCceEE---e--
Confidence 57999999998762 3478888899999999988 9999999999994 44455542111 11100 0
Q ss_pred cceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCCCCcEEEEEEccCCCCeEEEEEEeCCCcEE
Q 023716 191 LQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKMLTTSADEDNKVYVSTVQAYDYPVT 270 (278)
Q Consensus 191 l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~ 270 (278)
|...+...+.|+.++++ ...+=++-+-.+..+.+ .-.++++|+|.|.+ .| +..+..++..-+
T Consensus 168 --f~h~~~~~~pL~rGfdd--------~f~~PhSR~t~i~~~~i----~~~~~L~vla~s~e-~G---~~l~~s~d~r~v 229 (300)
T TIGR01001 168 --YKHDIAPDSLLLRGFDD--------FFLAPHSRYADFDAEDI----DKVTDLEILAESDE-AG---VYLAANKDERNI 229 (300)
T ss_pred --ecCccCCCCccccCCCC--------ccccCCCCCCCCCHHHH----hcCCCCeEEecCCC-cc---eEEEEcCCCCEE
Confidence 00000002344444432 22333443334543322 12358999999864 35 556666676655
Q ss_pred EEeecCC
Q 023716 271 AFQWHPE 277 (278)
Q Consensus 271 GvQfHPE 277 (278)
=++-|||
T Consensus 230 fi~GH~E 236 (300)
T TIGR01001 230 FVTGHPE 236 (300)
T ss_pred EEcCCCc
Confidence 5999999
No 104
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=97.99 E-value=2.3e-05 Score=55.79 Aligned_cols=76 Identities=21% Similarity=0.225 Sum_probs=52.3
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccc--hHHHHHHHHHHHHhcCCCCCCcEEEEechH
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLY--YAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~--~~~~~~li~~al~~~~~g~~~PVLGIClG~ 165 (278)
..+.+.+++.|..+.+++...............|+|+++||.+..... .....+.+.+...++ +|++|+|.|+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~g~ 89 (92)
T cd03128 15 ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAG-----KPVLGICLGA 89 (92)
T ss_pred ecHHHHHHhCCCEEEEEeCCCCcccccCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcC-----CEEEEEeccc
Confidence 356788999999999988776532211235689999999998853332 122334455555555 9999999999
Q ss_pred HHH
Q 023716 166 ELL 168 (278)
Q Consensus 166 QlL 168 (278)
|++
T Consensus 90 ~~~ 92 (92)
T cd03128 90 QLL 92 (92)
T ss_pred ccC
Confidence 864
No 105
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=97.96 E-value=3e-05 Score=75.32 Aligned_cols=91 Identities=19% Similarity=0.346 Sum_probs=60.2
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCC--CccchH
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK--DGLYYA 137 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~--~p~~~~ 137 (278)
++.|||.-.+- . ..-| ..-++.|++.|+.++.+....+.+ +..+|+|+||||... ...+..
T Consensus 244 ~~~Iava~d~a---f-------nFy~--~~~~~~L~~~g~~~~~~~~~~d~~-----l~~~d~l~ipGG~~~~~~~~l~~ 306 (449)
T TIGR00379 244 YVRIAVAQDQA---F-------NFYY--QDNLDALTHNAAELVPFSPLEDTE-----LPDVDAVYIGGGFPELFAEELSQ 306 (449)
T ss_pred CcEEEEEechh---h-------ceeH--HHHHHHHHHCCCEEEEECCccCCC-----CCCCCEEEeCCcHHHHHHHHHHh
Confidence 47899987541 1 1112 567788999999999986532221 457999999999741 111110
Q ss_pred --HHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHH
Q 023716 138 --IVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMII 172 (278)
Q Consensus 138 --~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~ 172 (278)
...+-++.+++++ .||||+|-|||+|...+
T Consensus 307 ~~~~~~~i~~~~~~G-----~pv~g~CgG~~~L~~~i 338 (449)
T TIGR00379 307 NQALRDSIKTFIHQG-----LPIYGECGGLMYLSQSL 338 (449)
T ss_pred hhHHHHHHHHHHHcC-----CCEEEEcHHHHHHHhhh
Confidence 1124455555666 99999999999999876
No 106
>PRK00784 cobyric acid synthase; Provisional
Probab=97.92 E-value=2e-05 Score=77.33 Aligned_cols=72 Identities=14% Similarity=0.169 Sum_probs=50.5
Q ss_pred HHHHHHHH-cCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCcc--chHH--HHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 89 SYVKFVES-AGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGL--YYAI--VEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 89 syv~~le~-~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~--~~~~--~~~li~~al~~~~~g~~~PVLGICl 163 (278)
.-++.|+. +|++++.+... + .+..+|||+||||...... +... ....++.+++++ .|+||||.
T Consensus 266 ~nl~~l~~~~g~~v~~~s~~---~----~l~~~d~lilpGg~~~~~~~~~~~~~~l~~~i~~~~~~g-----~pilg~C~ 333 (488)
T PRK00784 266 TDFDPLRAEPGVDVRYVRPG---E----PLPDADLVILPGSKNTIADLAWLRESGWDEAIRAHARRG-----GPVLGICG 333 (488)
T ss_pred cChHHHhhcCCCeEEEECCc---c----ccccCCEEEECCccchHHHHHHHHHcCHHHHHHHHHHcC-----CeEEEECH
Confidence 34578887 99999988532 2 2557999999999863211 1111 134455566667 99999999
Q ss_pred hHHHHHHHH
Q 023716 164 GFELLTMII 172 (278)
Q Consensus 164 G~QlL~~~~ 172 (278)
|||+|+..+
T Consensus 334 G~~~L~~~~ 342 (488)
T PRK00784 334 GYQMLGRRI 342 (488)
T ss_pred HHHHHhhhc
Confidence 999999875
No 107
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=97.60 E-value=5.4e-05 Score=63.22 Aligned_cols=53 Identities=21% Similarity=0.353 Sum_probs=38.0
Q ss_pred hcccCCEEEEcCCCCC--CccchH--HHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHh
Q 023716 116 KLELVNGVLYTGGWAK--DGLYYA--IVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIIS 173 (278)
Q Consensus 116 ~l~~iDGlIl~GG~~~--~p~~~~--~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~G 173 (278)
.+..+|+|+|+||... +..+.+ ..+.-++.+.+++ .||+|+|=|||+|...+-
T Consensus 4 ~~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G-----~pi~aeCGG~~~Lg~~i~ 60 (158)
T PF07685_consen 4 LPPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAG-----GPIYAECGGYQYLGESII 60 (158)
T ss_pred CCCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcC-----CcEEEEchHHHHHHHHHh
Confidence 4678999999999752 111111 1235566667777 999999999999998764
No 108
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=97.59 E-value=0.00022 Score=68.86 Aligned_cols=87 Identities=16% Similarity=0.305 Sum_probs=57.6
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHHHH
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVE 140 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~ 140 (278)
+.|||---. + -+|.-...++.||++ ++++.+..-.+.+ +.++|+|+|+||... .+.+...
T Consensus 234 ~~iavA~D~---A---------F~FyY~enl~~L~~~-aelv~fSPl~~~~-----lp~~D~l~lpGG~~e--~~~~~L~ 293 (433)
T PRK13896 234 PTVAVARDA---A---------FCFRYPATIERLRER-ADVVTFSPVAGDP-----LPDCDGVYLPGGYPE--LHADALA 293 (433)
T ss_pred CeEEEEEcC---c---------cceeCHHHHHHHHhc-CcEEEEcCCCCCC-----CCCCCEEEeCCCchh--hHHHHHH
Confidence 678886422 1 233336678899999 9999886543322 457999999999742 1111111
Q ss_pred -----HHHHHHHHhcCCCCCCcEEEEechHHHHHHHH
Q 023716 141 -----KVFKKILEKNDAGDHFPLYAHCLGFELLTMII 172 (278)
Q Consensus 141 -----~li~~al~~~~~g~~~PVLGIClG~QlL~~~~ 172 (278)
+-++.+.+++ .||+|+|-|+|+|...+
T Consensus 294 ~n~~~~~i~~~~~~G-----~pi~aeCGG~q~L~~~i 325 (433)
T PRK13896 294 DSPALDELADRAADG-----LPVLGECGGLMALAESL 325 (433)
T ss_pred hCCcHHHHHHHHHCC-----CcEEEEehHHHHhhccc
Confidence 2334444555 99999999999998865
No 109
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=97.20 E-value=0.00061 Score=66.75 Aligned_cols=51 Identities=12% Similarity=0.124 Sum_probs=34.6
Q ss_pred cccCCEEEEcCCCCCCcc--chHH--HHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHH
Q 023716 117 LELVNGVLYTGGWAKDGL--YYAI--VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMII 172 (278)
Q Consensus 117 l~~iDGlIl~GG~~~~p~--~~~~--~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~ 172 (278)
+..+|+|+||||...... +... ....++.+.+++ .||||||-|||+|...+
T Consensus 282 l~~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G-----~pvlgiCgG~q~Lg~~i 336 (475)
T TIGR00313 282 LTGCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEG-----GIVIGICGGYQMLGKEL 336 (475)
T ss_pred cccCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcC-----CcEEEEcHHHHHhhhhh
Confidence 457999999999862111 1111 123444455556 99999999999998864
No 110
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=97.18 E-value=0.0016 Score=58.05 Aligned_cols=98 Identities=13% Similarity=0.125 Sum_probs=65.3
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCC--ccch
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKD--GLYY 136 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~--p~~~ 136 (278)
.+|.|.+....... .....|+ ..+.+.+++.|+.+..+... ++..+.+..+|+|+++||.... ..+.
T Consensus 30 ~~~~v~fIPtAs~~-------~~~~~y~-~~~~~af~~lG~~v~~l~~~---~d~~~~l~~ad~I~v~GGnt~~l~~~l~ 98 (233)
T PRK05282 30 GRRKAVFIPYAGVT-------QSWDDYT-AKVAEALAPLGIEVTGIHRV---ADPVAAIENAEAIFVGGGNTFQLLKQLY 98 (233)
T ss_pred CCCeEEEECCCCCC-------CCHHHHH-HHHHHHHHHCCCEEEEeccc---hhhHHHHhcCCEEEECCccHHHHHHHHH
Confidence 45777776544321 1246676 46888999999998877543 2334568899999999997521 1111
Q ss_pred HH-HHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHH
Q 023716 137 AI-VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMII 172 (278)
Q Consensus 137 ~~-~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~ 172 (278)
+. ..+.++.+++++ +|++|+|-|.-+++-..
T Consensus 99 ~~gl~~~l~~~~~~G-----~~~~G~SAGAii~~~~i 130 (233)
T PRK05282 99 ERGLLAPIREAVKNG-----TPYIGWSAGANVAGPTI 130 (233)
T ss_pred HCCcHHHHHHHHHCC-----CEEEEECHHHHhhhccc
Confidence 11 235666677777 99999999997766543
No 111
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=97.14 E-value=0.0026 Score=56.04 Aligned_cols=78 Identities=19% Similarity=0.307 Sum_probs=53.5
Q ss_pred HHHHHHHcCCeEEEEeCCCC-------------h-----------------hhHHH-hcccCCEEEEcCCCCCC------
Q 023716 90 YVKFVESAGARVIPLIYNEP-------------E-----------------DVLFE-KLELVNGVLYTGGWAKD------ 132 (278)
Q Consensus 90 yv~~le~~Ga~~v~i~~~~~-------------~-----------------~~l~~-~l~~iDGlIl~GG~~~~------ 132 (278)
..+.|+++|..+........ . ..+.+ ..+.+|+|+||||....
T Consensus 25 P~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~dyDalviPGG~g~~~~l~d~ 104 (217)
T PRK11780 25 TLLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLAEADAEDFDALIVPGGFGAAKNLSNF 104 (217)
T ss_pred HHHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchhHCChhhCCEEEECCCCchhhhhhhh
Confidence 45788999998887743220 0 01122 23579999999996410
Q ss_pred ---cc---chHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHH
Q 023716 133 ---GL---YYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMII 172 (278)
Q Consensus 133 ---p~---~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~ 172 (278)
+. ......++++.+.+++ +||.+||.|-++|..+.
T Consensus 105 ~~~~~~lr~~~~v~~lv~~f~~~g-----K~vaAIChgp~iL~~~~ 145 (217)
T PRK11780 105 AVKGAECTVNPDVKALVRAFHQAG-----KPIGFICIAPAMLPKIL 145 (217)
T ss_pred cccchhcccCHHHHHHHHHHHHCC-----CEEEEECHHHHHHHHHh
Confidence 11 1233558888888888 99999999999998776
No 112
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=97.11 E-value=0.0029 Score=55.61 Aligned_cols=80 Identities=19% Similarity=0.267 Sum_probs=53.8
Q ss_pred HHHHHHHHcCCeEEEEeCCCC---------h---------------------hhHHH-hcccCCEEEEcCCCCCCccc--
Q 023716 89 SYVKFVESAGARVIPLIYNEP---------E---------------------DVLFE-KLELVNGVLYTGGWAKDGLY-- 135 (278)
Q Consensus 89 syv~~le~~Ga~~v~i~~~~~---------~---------------------~~l~~-~l~~iDGlIl~GG~~~~p~~-- 135 (278)
..++.|+++|..+........ . ..+.+ .++.+|+|+||||..-...+
T Consensus 21 ~p~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPGG~~~~~~l~D 100 (213)
T cd03133 21 LTLLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPGGFGAAKNLSD 100 (213)
T ss_pred HHHHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECCCCchhhhhhh
Confidence 356788999998888654210 0 11222 13569999999996421111
Q ss_pred ----------hHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHh
Q 023716 136 ----------YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIIS 173 (278)
Q Consensus 136 ----------~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~G 173 (278)
.....++++.+.+++ +||.+||.|-++|..+.+
T Consensus 101 ~~~~~~~~~~~~~l~~lv~~f~~~g-----K~VaAIChgp~~L~~~~~ 143 (213)
T cd03133 101 FAVKGADCTVNPEVERLVREFHQAG-----KPIGAICIAPALAAKILG 143 (213)
T ss_pred hcccccccccCHHHHHHHHHHHHCC-----CeEEEECHHHHHHHHHhc
Confidence 123457788888888 999999999999988764
No 113
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=97.02 E-value=0.0048 Score=51.22 Aligned_cols=78 Identities=21% Similarity=0.232 Sum_probs=50.8
Q ss_pred HHHHHHHHcCCeEEEEeCCCC------------hhhHHHh-cccCCEEEEcCCCCCCc-cchHHHHHHHHHHHHhcCCCC
Q 023716 89 SYVKFVESAGARVIPLIYNEP------------EDVLFEK-LELVNGVLYTGGWAKDG-LYYAIVEKVFKKILEKNDAGD 154 (278)
Q Consensus 89 syv~~le~~Ga~~v~i~~~~~------------~~~l~~~-l~~iDGlIl~GG~~~~p-~~~~~~~~li~~al~~~~~g~ 154 (278)
...+.++++|.++..+..+.. ...+.+. .+.+|+|++|||..... .......++++++.+++
T Consensus 17 ~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~~~~~~~~~~l~~~l~~~~~~~---- 92 (166)
T TIGR01382 17 YPLDRLREAGHEVDTVSKEAGTTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRAPEYLRLNNKAVRLVREFVEKG---- 92 (166)
T ss_pred HHHHHHHHCCCEEEEEecCCCceeccCCceeeccCChhhCCHHHCcEEEECCCCCHHHhccCHHHHHHHHHHHHcC----
Confidence 456788888988877643210 0112221 23589999999965211 01123457777777777
Q ss_pred CCcEEEEechHHHHHHH
Q 023716 155 HFPLYAHCLGFELLTMI 171 (278)
Q Consensus 155 ~~PVLGIClG~QlL~~~ 171 (278)
+|+.|||-|.++|+.+
T Consensus 93 -~~i~~ic~G~~~La~a 108 (166)
T TIGR01382 93 -KPVAAICHGPQLLISA 108 (166)
T ss_pred -CEEEEEChHHHHHHhc
Confidence 9999999999999874
No 114
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=96.88 E-value=0.0012 Score=52.21 Aligned_cols=45 Identities=13% Similarity=0.090 Sum_probs=30.5
Q ss_pred ccCCEEEEcCCCCCCccchH---HHHHHHHHHHHhcCCCCCCcEEEEechHHHH
Q 023716 118 ELVNGVLYTGGWAKDGLYYA---IVEKVFKKILEKNDAGDHFPLYAHCLGFELL 168 (278)
Q Consensus 118 ~~iDGlIl~GG~~~~p~~~~---~~~~li~~al~~~~~g~~~PVLGIClG~QlL 168 (278)
+++|.||||||.. .+.+.. ...+.++..++++ .|+||||+|.-+-
T Consensus 43 ~~ad~lVlPGGa~-~~~~~~L~~~g~~~i~~~v~~g-----~p~LGIClGAy~a 90 (114)
T cd03144 43 SKTALLVVPGGAD-LPYCRALNGKGNRRIRNFVRNG-----GNYLGICAGAYLA 90 (114)
T ss_pred hCCCEEEECCCCh-HHHHHHHHhhCcHHHHHHHHCC-----CcEEEEecCccce
Confidence 4799999999765 222211 1135555556677 9999999998665
No 115
>PRK04155 chaperone protein HchA; Provisional
Probab=96.74 E-value=0.025 Score=51.94 Aligned_cols=49 Identities=16% Similarity=0.060 Sum_probs=36.6
Q ss_pred cccCCEEEEcCCCCCCc--cchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHH
Q 023716 117 LELVNGVLYTGGWAKDG--LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTM 170 (278)
Q Consensus 117 l~~iDGlIl~GG~~~~p--~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~ 170 (278)
.+..|+|+||||..... .......++++++.+++ +||.+||.|-++|.-
T Consensus 145 ~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~-----K~VaAICHGPa~Ll~ 195 (287)
T PRK04155 145 DSDYAAVFIPGGHGALIGLPESEDVAAALQWALDND-----RFIITLCHGPAALLA 195 (287)
T ss_pred cccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcC-----CEEEEEChHHHHHHH
Confidence 35789999999965211 11223568899999888 999999999986655
No 116
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=96.72 E-value=0.0097 Score=49.29 Aligned_cols=78 Identities=18% Similarity=0.124 Sum_probs=52.0
Q ss_pred HHHHHHHHcCCeEEEEeCC-CCh-----h--------hHHHh-cccCCEEEEcCCCCCCc-cchHHHHHHHHHHHHhcCC
Q 023716 89 SYVKFVESAGARVIPLIYN-EPE-----D--------VLFEK-LELVNGVLYTGGWAKDG-LYYAIVEKVFKKILEKNDA 152 (278)
Q Consensus 89 syv~~le~~Ga~~v~i~~~-~~~-----~--------~l~~~-l~~iDGlIl~GG~~~~p-~~~~~~~~li~~al~~~~~ 152 (278)
...+.++++|.++..+..+ ... . .+.+. ...+|+|++|||..... .......++++++.+++
T Consensus 17 ~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~-- 94 (165)
T cd03134 17 YPLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGTNPDKLRRDPDAVAFVRAFAEAG-- 94 (165)
T ss_pred HHHHHHHHCCCEEEEEccCCCcccccCcCceeecCCCChHHCCHHHCCEEEECCCCChhhhccCHHHHHHHHHHHHcC--
Confidence 4567788899988887544 210 0 12221 13579999999974221 11233457777777777
Q ss_pred CCCCcEEEEechHHHHHHH
Q 023716 153 GDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 153 g~~~PVLGIClG~QlL~~~ 171 (278)
+||.|||-|.++|+.+
T Consensus 95 ---~~i~~ic~G~~~La~a 110 (165)
T cd03134 95 ---KPVAAICHGPWVLISA 110 (165)
T ss_pred ---CeEEEEchHHHHHHhc
Confidence 9999999999998874
No 117
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=96.72 E-value=0.0069 Score=53.82 Aligned_cols=50 Identities=18% Similarity=0.172 Sum_probs=38.0
Q ss_pred cccCCEEEEcCCCCC--CccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 117 LELVNGVLYTGGWAK--DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 117 l~~iDGlIl~GG~~~--~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
.+++|+|+||||..- +-.......++++.+.+++ +||-+||.|-++|.-+
T Consensus 92 ~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~g-----K~iaAIChgp~~L~~a 143 (231)
T cd03147 92 PDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYANG-----GVVAAVCHGPAILANL 143 (231)
T ss_pred HhhCcEEEECCCCchhhhcccCHHHHHHHHHHHHcC-----CEEEEEChHHHHHHhh
Confidence 357899999999652 1111234568888888888 9999999999998775
No 118
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=96.71 E-value=0.0093 Score=51.87 Aligned_cols=96 Identities=13% Similarity=0.192 Sum_probs=63.5
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCC--ChhhHHHhcccCCEEEEcCCCCCCccch
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE--PEDVLFEKLELVNGVLYTGGWAKDGLYY 136 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~--~~~~l~~~l~~iDGlIl~GG~~~~p~~~ 136 (278)
..|.|.++...... ...|. ..|.+++++.|+.++.++... +.+++.+.+..+|+|+++||... .+.
T Consensus 28 ~~~~i~~iptA~~~---------~~~~~-~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~--~~~ 95 (210)
T cd03129 28 AGARVLFIPTASGD---------RDEYG-EEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQL--RLL 95 (210)
T ss_pred CCCeEEEEeCCCCC---------hHHHH-HHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHH--HHH
Confidence 35778887554321 23343 568899999999988776542 33456678899999999999651 111
Q ss_pred HH-----HHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 137 AI-----VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 137 ~~-----~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
.. ..+.+.+...++ .|+.|+|-|..++...
T Consensus 96 ~~l~~t~~~~~i~~~~~~G-----~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 96 SVLRETPLLDAILKRVARG-----VVIGGTSAGAAVMGET 130 (210)
T ss_pred HHHHhCChHHHHHHHHHcC-----CeEEEcCHHHHHhhhc
Confidence 11 112223333355 9999999999999875
No 119
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.64 E-value=0.0032 Score=53.28 Aligned_cols=48 Identities=23% Similarity=0.302 Sum_probs=36.4
Q ss_pred cCCEEEEcCCCCCCc-cchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 119 LVNGVLYTGGWAKDG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 119 ~iDGlIl~GG~~~~p-~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
.+|+|+++||..... ........+++.+.+++ +||.|||.|.++|+.+
T Consensus 76 ~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~~~-----k~i~~ic~G~~~La~a 124 (180)
T cd03169 76 DYDALVIPGGRAPEYLRLDEKVLAIVRHFAEAN-----KPVAAICHGPQILAAA 124 (180)
T ss_pred HCCEEEEcCCCChhhhccCHHHHHHHHHHHHcC-----CEEEEECcHHHHHHHc
Confidence 579999999975211 11234457788888877 9999999999999885
No 120
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=96.63 E-value=0.0086 Score=53.24 Aligned_cols=49 Identities=12% Similarity=0.077 Sum_probs=36.4
Q ss_pred ccCCEEEEcCCCCC--CccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 118 ELVNGVLYTGGWAK--DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 118 ~~iDGlIl~GG~~~--~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
++.|+|++|||..- +=.......++++...+++ +||-+||.|-+.|.-+
T Consensus 95 ~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~g-----K~VaAICHGp~~L~~a 145 (232)
T cd03148 95 SEYAAVFIPGGHGALIGIPESQDVAAALQWAIKND-----RFVITLCHGPAAFLAA 145 (232)
T ss_pred hhceEEEECCCCCChhhcccCHHHHHHHHHHHHcC-----CEEEEECcHHHHHHhc
Confidence 57899999999652 1112233457888888888 9999999999876554
No 121
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=96.55 E-value=0.0091 Score=53.36 Aligned_cols=132 Identities=14% Similarity=0.196 Sum_probs=75.8
Q ss_pred ccCCEEEEcCCCCC-----CccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCc--ccccccccccccccc
Q 023716 118 ELVNGVLYTGGWAK-----DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKD--KNILESFNAADQAST 190 (278)
Q Consensus 118 ~~iDGlIl~GG~~~-----~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~--~~il~~~~~~~~~~~ 190 (278)
+++||+|+||-+.- +-.|+.+.+++++|....- --.|-||.|.|.--..+=|- ..+.+...+-
T Consensus 98 ~~FDG~IiTGAPve~l~feeV~YW~el~~I~eWskt~V-----~STl~ICWgaqAaly~~yGv~K~~l~~Kl~GV----- 167 (307)
T COG1897 98 QKFDGLIITGAPVELLPFEEVAYWEELKQIFEWSKTHV-----TSTLHICWGAQAALYYFYGVPKYTLPEKLSGV----- 167 (307)
T ss_pred cccCceEEeCCcccccCchhhhhHHHHHHHHHHHhhcc-----hhhhhhHHHHHHHHHHHcCCCccccchhhhce-----
Confidence 47999999998751 3467788889999998876 78899999999876665442 1111111100
Q ss_pred cceecc-cccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCCCCcEEEEEEccCCCCeEEEEEEeCCCcE
Q 023716 191 LQFMEN-TSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKMLTTSADEDNKVYVSTVQAYDYPV 269 (278)
Q Consensus 191 l~~~~~-~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~~~~vlA~s~D~~g~~~ieaie~~~~pi 269 (278)
+..+ ..-.+.++.++. +...+-++-+-.+..+.+++ . ..++|++.|.. -| +..+..++..-
T Consensus 168 --y~h~~l~p~~~l~rGfd--------d~f~~PhSR~t~~~~e~i~~---~-~~LeIL~es~e-~G---~~l~a~k~~r~ 229 (307)
T COG1897 168 --YKHDILSPHSLLTRGFD--------DSFLAPHSRYTDVPKEDILA---V-PDLEILAESKE-AG---VYLLASKDGRN 229 (307)
T ss_pred --eeccccCccchhhccCC--------ccccCcccccccCCHHHHhh---C-CCceeeecccc-cc---eEEEecCCCCe
Confidence 0000 000233333333 33233344444455544433 3 34899998853 35 44555555554
Q ss_pred EEEeecCC
Q 023716 270 TAFQWHPE 277 (278)
Q Consensus 270 ~GvQfHPE 277 (278)
.=+--|||
T Consensus 230 ifv~gH~E 237 (307)
T COG1897 230 IFVTGHPE 237 (307)
T ss_pred EEEeCCcc
Confidence 44556887
No 122
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=96.52 E-value=0.019 Score=46.50 Aligned_cols=94 Identities=20% Similarity=0.156 Sum_probs=59.9
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCC-----------hh-hHHHh-cccCCEEEEcCC
Q 023716 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP-----------ED-VLFEK-LELVNGVLYTGG 128 (278)
Q Consensus 62 vIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~-----------~~-~l~~~-l~~iDGlIl~GG 128 (278)
.|+|+..++-.. .+ .....+.++.+|.++..+..+.. .+ .+.+. ...+|.|++|||
T Consensus 3 ~v~ill~~g~~~---------~e--~~~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg 71 (142)
T cd03132 3 KVGILVADGVDA---------AE--LSALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGG 71 (142)
T ss_pred EEEEEEcCCcCH---------HH--HHHHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCC
Confidence 488887764211 12 24567888899999888754321 00 11111 124799999999
Q ss_pred CCCCcc--chHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 129 WAKDGL--YYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 129 ~~~~p~--~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
...... ......++++.+.+++ +||.+||-|-.+|+.+
T Consensus 72 ~~~~~~~~~~~~l~~~l~~~~~~~-----~~I~aic~G~~~La~a 111 (142)
T cd03132 72 AEAAFALAPSGRALHFVTEAFKHG-----KPIGAVGEGSDLLEAA 111 (142)
T ss_pred ccCHHHHccChHHHHHHHHHHhcC-----CeEEEcCchHHHHHHc
Confidence 763211 1223446777777777 9999999999998874
No 123
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.39 E-value=0.016 Score=48.94 Aligned_cols=50 Identities=16% Similarity=0.182 Sum_probs=36.3
Q ss_pred cccCCEEEEcCCCCCC-ccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 117 LELVNGVLYTGGWAKD-GLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 117 l~~iDGlIl~GG~~~~-p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
...+|.|++|||.... ........++++....++ ++|.+||-|..+|+.+
T Consensus 62 ~~~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~-----~~i~aic~g~~~La~a 112 (187)
T cd03137 62 LAAADTVIVPGGPDVDGRPPPPALLAALRRAAARG-----ARVASVCTGAFVLAEA 112 (187)
T ss_pred cCCCCEEEECCCcccccccCCHHHHHHHHHHHhcC-----CEEEEECHHHHHHHHc
Confidence 5679999999996532 111233446666666666 9999999999999875
No 124
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.23 E-value=0.024 Score=47.43 Aligned_cols=49 Identities=18% Similarity=0.150 Sum_probs=36.3
Q ss_pred ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 118 ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 118 ~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
+..|.|++|||......-.....+++++..+++ .+|.+||-|.++|+.+
T Consensus 59 ~~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~~~~-----~~i~aic~G~~~La~a 107 (170)
T cd03140 59 EDYDLLILPGGDSWDNPEAPDLAGLVRQALKQG-----KPVAAICGATLALARA 107 (170)
T ss_pred hHccEEEEcCCcccccCCcHHHHHHHHHHHHcC-----CEEEEEChHHHHHHHC
Confidence 468999999997532221223456777777777 9999999999999885
No 125
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=96.10 E-value=0.0041 Score=50.94 Aligned_cols=50 Identities=22% Similarity=0.322 Sum_probs=36.4
Q ss_pred cccCCEEEEcCCCC-CCccc-h-HHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 117 LELVNGVLYTGGWA-KDGLY-Y-AIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 117 l~~iDGlIl~GG~~-~~p~~-~-~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
.+..|+|+||||.. ..... . ....++++.+.+++ +||.+||-|-.+|..+
T Consensus 35 ~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~-----k~iaaIC~g~~~L~~~ 87 (147)
T PF01965_consen 35 PSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAG-----KPIAAICHGPAVLAAA 87 (147)
T ss_dssp GGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT------EEEEETTCHHHHHHT
T ss_pred hhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcC-----CeEEecCCCcchhhcc
Confidence 35699999999976 22111 1 34568888888888 9999999999888765
No 126
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=95.91 E-value=0.01 Score=51.98 Aligned_cols=73 Identities=18% Similarity=0.203 Sum_probs=47.7
Q ss_pred HHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccc----hHHHHHHHHHHHHhcCCCCCCcEEEEechHHH
Q 023716 92 KFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLY----YAIVEKVFKKILEKNDAGDHFPLYAHCLGFEL 167 (278)
Q Consensus 92 ~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~----~~~~~~li~~al~~~~~g~~~PVLGIClG~Ql 167 (278)
...+..|+.+.+.+.+.... .+ .+.+|-+++-||.|-.... ....+.-++.+++.+ +|++.||-|+|+
T Consensus 28 ~ra~~rgi~v~i~~vsl~d~-~~--~~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g-----~p~laiCgg~Ql 99 (250)
T COG3442 28 QRAEKRGIKVEIVEVSLTDT-FP--DDSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENG-----KPVLAICGGYQL 99 (250)
T ss_pred HHHHhcCCceEEEEeecCCC-CC--cccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcC-----CcEEEEccchhh
Confidence 35677888777666554332 22 2578988888887721111 111235567777777 999999999999
Q ss_pred HHHHH
Q 023716 168 LTMII 172 (278)
Q Consensus 168 L~~~~ 172 (278)
|.-.+
T Consensus 100 LG~yY 104 (250)
T COG3442 100 LGQYY 104 (250)
T ss_pred cccee
Confidence 98754
No 127
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=95.85 E-value=0.015 Score=56.53 Aligned_cols=66 Identities=17% Similarity=0.130 Sum_probs=41.6
Q ss_pred HHHH-cCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCc-c-chHH---HHHHHHHHHHhcCCCCCCcEEEEechHH
Q 023716 93 FVES-AGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDG-L-YYAI---VEKVFKKILEKNDAGDHFPLYAHCLGFE 166 (278)
Q Consensus 93 ~le~-~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p-~-~~~~---~~~li~~al~~~~~g~~~PVLGIClG~Q 166 (278)
.++. -+.++..++...+ +..+|.+||||.-..-. . +.+. .+++.+++.. + .||+|||=|||
T Consensus 270 pL~~~~~v~v~~v~~~~~-------l~~~dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~~~~-~-----~~viGICGG~Q 336 (486)
T COG1492 270 PLRAEPDVRVRFVKPGSD-------LRDADLVILPGSKNTIADLKILREGGMDEKILEYARK-G-----GDVIGICGGYQ 336 (486)
T ss_pred hhhcCCCeEEEEeccCCC-------CCCCCEEEeCCCcccHHHHHHHHHcCHHHHHHHHHhC-C-----CCEEEEcchHH
Confidence 3444 3778887765432 55699999999876321 1 1111 1244443332 4 89999999999
Q ss_pred HHHHH
Q 023716 167 LLTMI 171 (278)
Q Consensus 167 lL~~~ 171 (278)
+|...
T Consensus 337 mLG~~ 341 (486)
T COG1492 337 MLGRR 341 (486)
T ss_pred hhhhh
Confidence 99764
No 128
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=95.72 E-value=0.16 Score=52.72 Aligned_cols=95 Identities=16% Similarity=0.270 Sum_probs=59.5
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCC------C
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK------D 132 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~------~ 132 (278)
.+|.++|+--.+.+ + ...+.-.+.++|+.++-+..++-.+ =...|+++-||.++||... .
T Consensus 1057 ~~PkVAilREeGvN-------g------~rEMa~af~~AgF~~~DVtmtDlL~-G~~~ld~frGlaf~GGFSYaDvLgSa 1122 (1320)
T KOG1907|consen 1057 TAPKVAILREEGVN-------G------DREMAAAFYAAGFETVDVTMTDLLA-GRHHLDDFRGLAFCGGFSYADVLGSA 1122 (1320)
T ss_pred CCCceEEeeccccc-------c------HHHHHHHHHHcCCceeeeeeehhhc-CceeHhHhcceeeecCcchHhhhccc
Confidence 58999999765432 1 1345567889999988765432110 0124678999999999762 1
Q ss_pred ccch------HHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 133 GLYY------AIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 133 p~~~------~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
..|. ...+.-+++...+.| .=-||||.|.|+|+..
T Consensus 1123 kGWAasil~ne~v~~QF~~F~~R~D----tFslGiCNGCQlms~L 1163 (1320)
T KOG1907|consen 1123 KGWAASILFNESVRSQFEAFFNRQD----TFSLGICNGCQLMSRL 1163 (1320)
T ss_pred cchhhheeeChhHHHHHHHHhcCCC----ceeeecccHhHHHHHh
Confidence 1111 123344555544332 4579999999999985
No 129
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=95.45 E-value=0.072 Score=43.68 Aligned_cols=79 Identities=18% Similarity=0.196 Sum_probs=50.7
Q ss_pred HHHHHHHHHcCCeEEEEeCCCC------------h-hhHHHh-cccCCEEEEcCCC-CCC-ccchHHHHHHHHHHHHhcC
Q 023716 88 ASYVKFVESAGARVIPLIYNEP------------E-DVLFEK-LELVNGVLYTGGW-AKD-GLYYAIVEKVFKKILEKND 151 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~------------~-~~l~~~-l~~iDGlIl~GG~-~~~-p~~~~~~~~li~~al~~~~ 151 (278)
....+.++.+|.++..+..+.. . ..+.+. ....|.|++|||. ... ........++++++.+++
T Consensus 15 ~~~~~~~~~a~~~v~~vs~~~~~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~~~~~~~~~l~~~l~~~~~~~- 93 (163)
T cd03135 15 VTPVDVLRRAGIEVTTASLEKKLAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKG- 93 (163)
T ss_pred HHHHHHHHHCCCEEEEEEcCCCceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchHHHHHhCHHHHHHHHHHHHcC-
Confidence 3456778888877766643211 0 122221 2578999999997 311 111223456777777767
Q ss_pred CCCCCcEEEEechHHHHHHH
Q 023716 152 AGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 152 ~g~~~PVLGIClG~QlL~~~ 171 (278)
++|.+||-|..+|+.+
T Consensus 94 ----~~i~~ic~g~~~La~a 109 (163)
T cd03135 94 ----KLIAAICAAPAVLAKA 109 (163)
T ss_pred ----CEEEEEchhHHHHHHc
Confidence 9999999999999875
No 130
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=95.44 E-value=0.15 Score=43.46 Aligned_cols=94 Identities=11% Similarity=0.125 Sum_probs=55.6
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCC---------------ChhhHHHh-cccCCEE
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE---------------PEDVLFEK-LELVNGV 123 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~---------------~~~~l~~~-l~~iDGl 123 (278)
+|.|.|+..++-.. ..+ ...++.++++|..+....... +...+.+. .+..|.|
T Consensus 2 ~~~~~il~~~g~~~---------~e~--~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l 70 (196)
T PRK11574 2 SASALVCLAPGSEE---------TEA--VTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVI 70 (196)
T ss_pred CceEEEEeCCCcch---------hhH--hHHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEE
Confidence 46788888775322 122 345677788887655543211 01122232 2468999
Q ss_pred EEcCCCCC-Cc-cchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHH
Q 023716 124 LYTGGWAK-DG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLT 169 (278)
Q Consensus 124 Il~GG~~~-~p-~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~ 169 (278)
++|||..- .. ........+++.+.+++ ++|.+||-|..+|.
T Consensus 71 ~ipGG~~~~~~~~~~~~l~~~L~~~~~~g-----~~v~aic~G~~~ll 113 (196)
T PRK11574 71 VLPGGIKGAECFRDSPLLVETVRQFHRSG-----RIVAAICAAPATVL 113 (196)
T ss_pred EECCCCchhhhhhhCHHHHHHHHHHHHCC-----CEEEEECHhHHHHH
Confidence 99999631 11 11122346677777777 99999999998654
No 131
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=95.43 E-value=0.024 Score=48.07 Aligned_cols=95 Identities=17% Similarity=0.165 Sum_probs=58.6
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCC--------------hhhHHHhc--ccCCEEE
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP--------------EDVLFEKL--ELVNGVL 124 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~--------------~~~l~~~l--~~iDGlI 124 (278)
..|+|+..++... ..+ ..-.+.++++|..+..+..... .+...+.. +..|.|+
T Consensus 3 ~~i~i~~~~g~e~---------~E~--~~p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ 71 (188)
T COG0693 3 KKIAILLADGFED---------LEL--IVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALV 71 (188)
T ss_pred ceeEEEecCccee---------hhH--hHHHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEE
Confidence 3477777665322 222 2345788888887665533321 00111122 4789999
Q ss_pred EcCC-CCCCccch-HHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 125 YTGG-WAKDGLYY-AIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 125 l~GG-~~~~p~~~-~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
+||| ....-.+. ....++++...+.+ +||.+||.|-++|..+
T Consensus 72 ipGG~~~~~~~~~~~~~~~~v~~~~~~~-----k~vaaIC~g~~~L~~a 115 (188)
T COG0693 72 IPGGDHGPEYLRPDPDLLAFVRDFYANG-----KPVAAICHGPAVLAAA 115 (188)
T ss_pred ECCCccchhhccCcHHHHHHHHHHHHcC-----CEEEEEChhHHHHhcc
Confidence 9999 55211111 34457888888888 9999999999999764
No 132
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=95.13 E-value=0.062 Score=44.42 Aligned_cols=73 Identities=12% Similarity=0.180 Sum_probs=51.2
Q ss_pred HHHHHHHHHcCCeEEEEeCCC-ChhhHHHhcccCCEEEEcCCCCCCccchHH-----HHHHHHHHHHhcCCCCCCcEEEE
Q 023716 88 ASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLYYAI-----VEKVFKKILEKNDAGDHFPLYAH 161 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~-~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~-----~~~li~~al~~~~~g~~~PVLGI 161 (278)
..+.+++++.|+++..++... +.+++.+.+..+|+|+|.||.-. .+... ....++.++.++ .|+.|+
T Consensus 3 ~~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~~~--~l~~~l~~t~l~~~i~~~~~~G-----~vi~G~ 75 (154)
T PF03575_consen 3 EKFRKAFRKLGFEVDQLDLSDRNDADILEAIREADAIFLGGGDTF--RLLRQLKETGLDEAIREAYRKG-----GVIIGT 75 (154)
T ss_dssp HHHHHHHHHCT-EEEECCCTSCGHHHHHHHHHHSSEEEE--S-HH--HHHHHHHHTTHHHHHHHHHHTT-----SEEEEE
T ss_pred HHHHHHHHHCCCEEEEEeccCCChHHHHHHHHhCCEEEECCCCHH--HHHHHHHhCCHHHHHHHHHHCC-----CEEEEE
Confidence 457899999999988887765 34566777889999999999641 22222 246777777777 999999
Q ss_pred echHHH
Q 023716 162 CLGFEL 167 (278)
Q Consensus 162 ClG~Ql 167 (278)
--|.-+
T Consensus 76 SAGA~i 81 (154)
T PF03575_consen 76 SAGAMI 81 (154)
T ss_dssp THHHHC
T ss_pred ChHHhh
Confidence 999844
No 133
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=95.10 E-value=0.061 Score=45.13 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=33.8
Q ss_pred ccCCEEEEcCCCCCC-ccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 118 ELVNGVLYTGGWAKD-GLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 118 ~~iDGlIl~GG~~~~-p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
..+|.|++|||.... ........++++++.+++ ++|.++|-|.-+|+.+
T Consensus 61 ~~~D~lvipgg~~~~~~~~~~~~~~~l~~~~~~~-----k~i~aic~g~~~La~a 110 (183)
T cd03139 61 PDLDVLLVPGGGGTRALVNDPALLDFIRRQAARA-----KYVTSVCTGALLLAAA 110 (183)
T ss_pred CCCCEEEECCCcchhhhccCHHHHHHHHHhcccC-----CEEEEEchHHHHHHhc
Confidence 478999999996421 111223345666555555 8999999999888764
No 134
>PRK11249 katE hydroperoxidase II; Provisional
Probab=95.02 E-value=0.14 Score=52.86 Aligned_cols=97 Identities=13% Similarity=0.072 Sum_probs=62.4
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCC------hh--hHHHhcc-----cCCEEEE
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP------ED--VLFEKLE-----LVNGVLY 125 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~------~~--~l~~~l~-----~iDGlIl 125 (278)
....|||+...+... .. .....+.|+++|+.+.++-.... .. .....++ .+|+|++
T Consensus 596 ~gRKIaILVaDG~d~---------~e--v~~~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvV 664 (752)
T PRK11249 596 KGRKVAILLNDGVDA---------AD--LLAILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIV 664 (752)
T ss_pred cccEEEEEecCCCCH---------HH--HHHHHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEE
Confidence 345799998764211 11 24577899999999888743321 00 0111122 4899999
Q ss_pred cCCCCCCccc--hHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 126 TGGWAKDGLY--YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 126 ~GG~~~~p~~--~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
+||....... ......+++.+.++. ++|.+||-|.++|..+
T Consensus 665 PGG~~~~~~L~~d~~al~fL~eaykHg-----K~IAAiCaG~~LLaaA 707 (752)
T PRK11249 665 PGGKANIADLADNGDARYYLLEAYKHL-----KPIALAGDARKLKAAL 707 (752)
T ss_pred CCCchhHHHHhhCHHHHHHHHHHHHcC-----CEEEEeCccHHHHHhc
Confidence 9996421111 223457788888877 9999999999999874
No 135
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=94.97 E-value=0.069 Score=51.38 Aligned_cols=88 Identities=19% Similarity=0.324 Sum_probs=60.4
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccch-HH-
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYY-AI- 138 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~-~~- 138 (278)
..|||---. + -+|--....+.++++|+.++.+..-.+++ +-+.+|+|.|+||.. +.+ ++
T Consensus 246 ~rIAVA~D~---A---------F~FyY~~nl~~Lr~~GAelv~FSPL~D~~----lP~~~D~vYlgGGYP---ElfA~~L 306 (451)
T COG1797 246 VRIAVARDA---A---------FNFYYPENLELLREAGAELVFFSPLADEE----LPPDVDAVYLGGGYP---ELFAEEL 306 (451)
T ss_pred ceEEEEecc---h---------hccccHHHHHHHHHCCCEEEEeCCcCCCC----CCCCCCEEEeCCCCh---HHHHHHH
Confidence 579986432 1 22223567899999999999996655443 223699999999964 322 22
Q ss_pred -----HHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHH
Q 023716 139 -----VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMII 172 (278)
Q Consensus 139 -----~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~ 172 (278)
.++-++.+.+.+ +||+|=|=|+--|...+
T Consensus 307 ~~n~~~~~~i~~~~~~G-----~piyaECGGlMYL~~~l 340 (451)
T COG1797 307 SANESMRRAIKAFAAAG-----KPIYAECGGLMYLGESL 340 (451)
T ss_pred hhCHHHHHHHHHHHHcC-----CceEEecccceeehhhe
Confidence 235555566666 99999999998877654
No 136
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=94.79 E-value=0.036 Score=48.74 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=36.8
Q ss_pred ccCCEEEEcCCCCCCc--cchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 118 ELVNGVLYTGGWAKDG--LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 118 ~~iDGlIl~GG~~~~p--~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
+.+|+|+||||..... .......++++.+.+++ ++|.+||-|-.+|+.+
T Consensus 89 ~~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~~~~-----k~iaaIC~g~~~La~a 139 (221)
T cd03141 89 SDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENG-----KVVAAVCHGPAALLNV 139 (221)
T ss_pred hHceEEEECCCcccccccccCHHHHHHHHHHHHcC-----CEEEEEcchHHHHHhc
Confidence 4689999999975211 11233457888888877 9999999999998875
No 137
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=94.68 E-value=0.16 Score=44.56 Aligned_cols=96 Identities=16% Similarity=0.240 Sum_probs=63.5
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeE-EEEeCCC----ChhhHHHhcccCCEEEEcCCCCCCc
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARV-IPLIYNE----PEDVLFEKLELVNGVLYTGGWAKDG 133 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~-v~i~~~~----~~~~l~~~l~~iDGlIl~GG~~~~p 133 (278)
..|.|.++...... ...| ...|.+.+++.|+.. ..+.... ..+++.+.+..+|+|++.||...
T Consensus 28 ~~~~i~~iptA~~~---------~~~~-~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~-- 95 (217)
T cd03145 28 AGARIVVIPAASEE---------PAEV-GEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQL-- 95 (217)
T ss_pred CCCcEEEEeCCCcC---------hhHH-HHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHH--
Confidence 35778887655321 1333 456889999999964 4443331 23345667889999999999641
Q ss_pred cchH-----HHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 134 LYYA-----IVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 134 ~~~~-----~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
.+.. ...+.++.+++++ .|+.|+--|.-++...
T Consensus 96 ~~~~~l~~t~l~~~l~~~~~~G-----~v~~G~SAGA~i~~~~ 133 (217)
T cd03145 96 RITSALGGTPLLDALRKVYRGG-----VVIGGTSAGAAVMSDT 133 (217)
T ss_pred HHHHHHcCChHHHHHHHHHHcC-----CEEEEccHHHHhhhhc
Confidence 1111 1235677777777 9999999999887653
No 138
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=94.64 E-value=0.14 Score=46.07 Aligned_cols=97 Identities=18% Similarity=0.246 Sum_probs=62.7
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCe-EEEEeCCC----ChhhHHHhcccCCEEEEcCCCCC--
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGAR-VIPLIYNE----PEDVLFEKLELVNGVLYTGGWAK-- 131 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~-~v~i~~~~----~~~~l~~~l~~iDGlIl~GG~~~-- 131 (278)
..|.|.|+..-.. .+..| ...|.+++++.|+. +.++.... ..++..+.+..+|+|+++||...
T Consensus 27 ~~~rI~~iptAS~---------~~~~~-~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGnq~~l 96 (250)
T TIGR02069 27 EDAIIVIITSASE---------EPREV-GERYITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTGGDQLRI 96 (250)
T ss_pred CCceEEEEeCCCC---------ChHHH-HHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeCCCHHHH
Confidence 3478888764321 12344 35799999999995 55555432 22334567889999999999641
Q ss_pred CccchH-HHHHHHHHHHHhcCCCCCCcEEEEechHHHHHH
Q 023716 132 DGLYYA-IVEKVFKKILEKNDAGDHFPLYAHCLGFELLTM 170 (278)
Q Consensus 132 ~p~~~~-~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~ 170 (278)
-..+-+ .....++.++++. .|+.|+--|.-+|.-
T Consensus 97 ~~~l~~t~l~~~l~~~~~~G-----~vi~G~SAGA~i~~~ 131 (250)
T TIGR02069 97 TSLLGDTPLLDRLRKRVHEG-----IILGGTSAGAAVMSD 131 (250)
T ss_pred HHHHcCCcHHHHHHHHHHcC-----CeEEEccHHHHhccc
Confidence 001101 1235666677777 999999999988853
No 139
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=93.96 E-value=0.12 Score=43.57 Aligned_cols=50 Identities=12% Similarity=0.075 Sum_probs=36.0
Q ss_pred cccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 117 LELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 117 l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
...+|.|++|||............++++...+++ +.|.+||-|..+|+.+
T Consensus 62 ~~~~D~liipgg~~~~~~~~~~~~~~l~~~~~~~-----~~i~aic~g~~~La~a 111 (185)
T cd03136 62 APPLDYLFVVGGLGARRAVTPALLAWLRRAARRG-----VALGGIDTGAFLLARA 111 (185)
T ss_pred cCCCCEEEEeCCCCccccCCHHHHHHHHHHHhcC-----CEEEEEcHHHHHHHHc
Confidence 3468999999996533222233446677666666 9999999999998874
No 140
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=93.96 E-value=0.13 Score=43.78 Aligned_cols=50 Identities=16% Similarity=0.140 Sum_probs=35.7
Q ss_pred cccCCEEEEcCCCCCCc--cc--hHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 117 LELVNGVLYTGGWAKDG--LY--YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 117 l~~iDGlIl~GG~~~~p--~~--~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
....|.|++|||..... .. .....++++...+++ ++|.+||-|..+|+.+
T Consensus 67 ~~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~i~aic~G~~~La~a 120 (195)
T cd03138 67 VPAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANG-----ATVAAACTGVFLLAEA 120 (195)
T ss_pred cCCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcC-----CEEEEecHHHHHHHHc
Confidence 45789999999865221 11 123346677676767 9999999999998874
No 141
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=93.59 E-value=0.093 Score=43.90 Aligned_cols=50 Identities=20% Similarity=0.231 Sum_probs=35.2
Q ss_pred cccCCEEEEcCCCCCCc--cchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 117 LELVNGVLYTGGWAKDG--LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 117 l~~iDGlIl~GG~~~~p--~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
...+|.|++|||..... .......++++.+.+++ ++|.+||-|..+|+.+
T Consensus 61 ~~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~-----~~i~~ic~G~~~La~a 112 (179)
T TIGR01383 61 LEEFDAIVLPGGMPGAENLRNSKLLLNILKKQESKG-----KLVAAICAAPAVLLAA 112 (179)
T ss_pred cccCCEEEECCCchHHHHHhhCHHHHHHHHHHHHCC-----CEEEEEChhHHHHHhc
Confidence 45689999999853111 11123346677676677 9999999999999885
No 142
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.49 E-value=0.56 Score=43.49 Aligned_cols=83 Identities=22% Similarity=0.192 Sum_probs=50.8
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCCh-----------------hhHHHhcccCCEEE
Q 023716 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE-----------------DVLFEKLELVNGVL 124 (278)
Q Consensus 62 vIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~-----------------~~l~~~l~~iDGlI 124 (278)
.|||..++... ...-+.....+|+++.|..+......... +......+.+|-+|
T Consensus 7 ~I~iv~~~~~~---------~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 77 (306)
T PRK03372 7 RVLLVAHTGRD---------EATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVL 77 (306)
T ss_pred EEEEEecCCCH---------HHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEE
Confidence 49999887532 12234567888999999988875432110 00012234689999
Q ss_pred EcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechH
Q 023716 125 YTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (278)
Q Consensus 125 l~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~ 165 (278)
.-||.. +.-...+.+...+ +|||||-.|.
T Consensus 78 ~lGGDG-------T~L~aar~~~~~~-----~PilGIN~G~ 106 (306)
T PRK03372 78 VLGGDG-------TILRAAELARAAD-----VPVLGVNLGH 106 (306)
T ss_pred EEcCCH-------HHHHHHHHhccCC-----CcEEEEecCC
Confidence 999965 3223333333345 9999999873
No 143
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=92.31 E-value=0.6 Score=41.37 Aligned_cols=69 Identities=19% Similarity=0.205 Sum_probs=42.0
Q ss_pred HHHHHHcCCeEEEEeCCCCh-------------hhHHH-hcccCCEEEEcCCCCCCccchH---HHHHHHHHHHHhcCCC
Q 023716 91 VKFVESAGARVIPLIYNEPE-------------DVLFE-KLELVNGVLYTGGWAKDGLYYA---IVEKVFKKILEKNDAG 153 (278)
Q Consensus 91 v~~le~~Ga~~v~i~~~~~~-------------~~l~~-~l~~iDGlIl~GG~~~~p~~~~---~~~~li~~al~~~~~g 153 (278)
...+++.|+.++..-.+..+ ..+.+ .-+.+|.++||||..- ..+.. ...++++..-+.+
T Consensus 25 ~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g-~e~L~~~~~v~~lvK~q~~~g--- 100 (247)
T KOG2764|consen 25 IDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPG-AETLSECEKVVDLVKEQAESG--- 100 (247)
T ss_pred HHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCchh-hhhhhhcHHHHHHHHHHHhcC---
Confidence 45677888777766433210 00111 1267999999999331 12211 2346777666666
Q ss_pred CCCcEEEEechH
Q 023716 154 DHFPLYAHCLGF 165 (278)
Q Consensus 154 ~~~PVLGIClG~ 165 (278)
++|..||.|-
T Consensus 101 --kLIaaICaap 110 (247)
T KOG2764|consen 101 --KLIAAICAAP 110 (247)
T ss_pred --CeEEEeecch
Confidence 9999999986
No 144
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=92.25 E-value=0.3 Score=45.05 Aligned_cols=50 Identities=14% Similarity=0.191 Sum_probs=34.9
Q ss_pred cccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 117 LELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 117 l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
.+.+|.|++|||............++++...+++ ++|.|||-|.-+|+.+
T Consensus 73 ~~~~D~livpGg~~~~~~~~~~l~~~l~~~~~~~-----~~i~aic~g~~~La~a 122 (322)
T PRK09393 73 LDRADTIVIPGWRGPDAPVPEPLLEALRAAHARG-----ARLCSICSGVFVLAAA 122 (322)
T ss_pred cCCCCEEEECCCCcccccCCHHHHHHHHHHHHcC-----CEEEEEcHHHHHHHhc
Confidence 5678999999986532222223345566555555 8999999999988875
No 145
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=91.41 E-value=0.23 Score=41.13 Aligned_cols=50 Identities=16% Similarity=0.088 Sum_probs=31.5
Q ss_pred cccCCEEEEcCCCCCCc-cchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 117 LELVNGVLYTGGWAKDG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 117 l~~iDGlIl~GG~~~~p-~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
....|.||+|||..... .......+.++...+++ .+|.+||-|..+|+.+
T Consensus 59 ~~~~D~lvvpg~~~~~~~~~~~~l~~~l~~~~~~~-----~~i~aic~G~~~La~a 109 (166)
T PF13278_consen 59 APDFDILVVPGGPGFDAAAKDPALLDWLRQQHAQG-----TYIAAICTGALLLAEA 109 (166)
T ss_dssp CSCCSEEEEE-STTHHHHTT-HHHHHHHHHHHCCT-----SEEEEETTHHHHHHHT
T ss_pred cccCCEEEeCCCCCchhcccCHHHHHHhhhhhccc-----eEEeeeehHHHHHhhh
Confidence 56799999999987111 11111223333333334 9999999999999885
No 146
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.75 E-value=1.3 Score=40.81 Aligned_cols=83 Identities=19% Similarity=0.042 Sum_probs=50.7
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCCh-----------h---hHHHhcccCCEEEEcC
Q 023716 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE-----------D---VLFEKLELVNGVLYTG 127 (278)
Q Consensus 62 vIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~-----------~---~l~~~l~~iDGlIl~G 127 (278)
.|||..++... ...-+.....+|+++.|..+...+..... . ...+..+.+|-+|.-|
T Consensus 2 ~igii~~~~~~---------~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lG 72 (292)
T PRK01911 2 KIAIFGQTYQE---------SASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVISIG 72 (292)
T ss_pred EEEEEeCCCCH---------HHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEEEC
Confidence 38998887432 23334567888999999988875421110 0 1122334689999999
Q ss_pred CCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechH
Q 023716 128 GWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (278)
Q Consensus 128 G~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~ 165 (278)
|.. +.-...+.+...+ +|||||-.|-
T Consensus 73 GDG-------T~L~aa~~~~~~~-----~PilGIN~G~ 98 (292)
T PRK01911 73 GDG-------TFLRTATYVGNSN-----IPILGINTGR 98 (292)
T ss_pred CcH-------HHHHHHHHhcCCC-----CCEEEEecCC
Confidence 965 2222333333334 9999999885
No 147
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.72 E-value=1.3 Score=40.78 Aligned_cols=84 Identities=19% Similarity=0.132 Sum_probs=51.7
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCC--------hhhHHHhcccCCEEEEcCCCCCC
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP--------EDVLFEKLELVNGVLYTGGWAKD 132 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~--------~~~l~~~l~~iDGlIl~GG~~~~ 132 (278)
..|||..++... ...-+.....+|+++.|..+........ .....+..+.+|-+|.-||..
T Consensus 6 ~~i~iv~~~~~~---------~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~lGGDG-- 74 (292)
T PRK03378 6 KCIGIVGHPRHP---------TALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIVVGGDG-- 74 (292)
T ss_pred CEEEEEEeCCCH---------HHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEEECCcH--
Confidence 359999887532 2333456788899999998876542110 001123334689999999965
Q ss_pred ccchHHHHHHHHHHHHhcCCCCCCcEEEEechH
Q 023716 133 GLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (278)
Q Consensus 133 p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~ 165 (278)
+.-+..+.+...+ +||+||-.|-
T Consensus 75 -----T~L~aa~~~~~~~-----~Pilgin~G~ 97 (292)
T PRK03378 75 -----NMLGAARVLARYD-----IKVIGINRGN 97 (292)
T ss_pred -----HHHHHHHHhcCCC-----CeEEEEECCC
Confidence 2222333332334 9999999987
No 148
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=90.31 E-value=0.81 Score=40.16 Aligned_cols=78 Identities=14% Similarity=0.183 Sum_probs=57.6
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCC-ChhhHHHhcccCCEEEEcCCCCCCc--cchHH-HHHHHHHHHHhcCCCCCCcE
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDG--LYYAI-VEKVFKKILEKNDAGDHFPL 158 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~-~~~~l~~~l~~iDGlIl~GG~~~~p--~~~~~-~~~li~~al~~~~~g~~~PV 158 (278)
..|+. ...++++..|..+.-++... +.+.+++.+.+.|+|++.||.-..- .+..+ ..++++..+.++ .|.
T Consensus 48 ~~Yv~-k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGNTF~LL~~lke~gld~iIr~~vk~G-----~~Y 121 (224)
T COG3340 48 DFYVE-KVRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGNTFNLLQELKETGLDDIIRERVKAG-----TPY 121 (224)
T ss_pred HHHHH-HHHHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCchHHHHHHHHHHhCcHHHHHHHHHcC-----Cce
Confidence 55654 45679999999999887654 4577888888999999999975211 11111 237888888888 999
Q ss_pred EEEechHH
Q 023716 159 YAHCLGFE 166 (278)
Q Consensus 159 LGIClG~Q 166 (278)
.|+.-|.-
T Consensus 122 iG~SAGA~ 129 (224)
T COG3340 122 IGWSAGAN 129 (224)
T ss_pred EEeccCce
Confidence 99998873
No 149
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.16 E-value=1.2 Score=41.16 Aligned_cols=82 Identities=20% Similarity=0.097 Sum_probs=50.3
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCCh-----------------hhHHHhcccCCEEE
Q 023716 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE-----------------DVLFEKLELVNGVL 124 (278)
Q Consensus 62 vIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~-----------------~~l~~~l~~iDGlI 124 (278)
.|||..++... ...-+.....+|+++.|..++........ ....+..+.+|-+|
T Consensus 3 ~igiv~n~~~~---------~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi 73 (305)
T PRK02649 3 KAGIIYNDGKP---------LAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAI 73 (305)
T ss_pred EEEEEEcCCCH---------HHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEE
Confidence 48999876431 13334567888999999988765421100 01122334689999
Q ss_pred EcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEech
Q 023716 125 YTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (278)
Q Consensus 125 l~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG 164 (278)
.-||.+ +.-...+.....+ +|||||-.|
T Consensus 74 ~iGGDG-------TlL~aar~~~~~~-----iPilGIN~G 101 (305)
T PRK02649 74 VLGGDG-------TVLSAARQLAPCG-----IPLLTINTG 101 (305)
T ss_pred EEeCcH-------HHHHHHHHhcCCC-----CcEEEEeCC
Confidence 999965 3223333333345 999999887
No 150
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.79 E-value=2.2 Score=39.30 Aligned_cols=83 Identities=22% Similarity=0.177 Sum_probs=50.7
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCC-------------hhhHHHhcccCCEEEEcCC
Q 023716 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP-------------EDVLFEKLELVNGVLYTGG 128 (278)
Q Consensus 62 vIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~-------------~~~l~~~l~~iDGlIl~GG 128 (278)
.|||..++... ...-+.....+|+++.|..++....... .....+..+.+|-+|.-||
T Consensus 7 ~i~ii~~~~~~---------~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGG 77 (296)
T PRK04539 7 NIGIVTRPNTP---------DIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAVLGG 77 (296)
T ss_pred EEEEEecCCCH---------HHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEEECC
Confidence 49999887532 1233456788899999998887542111 0011222346899999999
Q ss_pred CCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechH
Q 023716 129 WAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (278)
Q Consensus 129 ~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~ 165 (278)
.. +.-...+.+...+ +||+||-.|.
T Consensus 78 DG-------T~L~aa~~~~~~~-----~PilGIN~G~ 102 (296)
T PRK04539 78 DG-------TFLSVAREIAPRA-----VPIIGINQGH 102 (296)
T ss_pred cH-------HHHHHHHHhcccC-----CCEEEEecCC
Confidence 65 2222233232334 9999999885
No 151
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.51 E-value=1.9 Score=39.57 Aligned_cols=82 Identities=16% Similarity=0.091 Sum_probs=50.8
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCCh-----hhHHHhcccCCEEEEcCCCCCCccch
Q 023716 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE-----DVLFEKLELVNGVLYTGGWAKDGLYY 136 (278)
Q Consensus 62 vIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~-----~~l~~~l~~iDGlIl~GG~~~~p~~~ 136 (278)
.|||..++.. . ..-+.....+|+++.|..+..-+..... ....+..+.+|-+|.-||..
T Consensus 12 ~i~ii~~~~~-~---------~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDG------ 75 (287)
T PRK14077 12 KIGLVTRPNV-S---------LDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELFKISDFLISLGGDG------ 75 (287)
T ss_pred EEEEEeCCcH-H---------HHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcccCCCEEEEECCCH------
Confidence 5999988742 1 2334566788999999888775432110 01122334689999999965
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEechH
Q 023716 137 AIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (278)
Q Consensus 137 ~~~~~li~~al~~~~~g~~~PVLGIClG~ 165 (278)
+.-+..+.+...+ +|||||-.|.
T Consensus 76 -T~L~aa~~~~~~~-----~PilGIN~G~ 98 (287)
T PRK14077 76 -TLISLCRKAAEYD-----KFVLGIHAGH 98 (287)
T ss_pred -HHHHHHHHhcCCC-----CcEEEEeCCC
Confidence 2223333333345 9999999886
No 152
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=86.97 E-value=3.6 Score=37.84 Aligned_cols=84 Identities=12% Similarity=0.026 Sum_probs=50.5
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCC--------hhhHHHhcccCCEEEEcCCCCCC
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP--------EDVLFEKLELVNGVLYTGGWAKD 132 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~--------~~~l~~~l~~iDGlIl~GG~~~~ 132 (278)
..|||..++... ...-+....++|+++.|..+........ .....+..+.+|-+|.-||..
T Consensus 6 ~~v~iv~~~~~~---------~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDG-- 74 (291)
T PRK02155 6 KTVALIGRYQTP---------GIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVLGGDG-- 74 (291)
T ss_pred CEEEEEecCCCH---------HHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEEECCcH--
Confidence 369999887431 2333456788999999988766432110 001122334689999999865
Q ss_pred ccchHHHHHHHHHHHHhcCCCCCCcEEEEechH
Q 023716 133 GLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (278)
Q Consensus 133 p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~ 165 (278)
+.-+.++.....+ .|+|||-.|.
T Consensus 75 -----t~l~~~~~~~~~~-----~pilGIn~G~ 97 (291)
T PRK02155 75 -----TMLGIGRQLAPYG-----VPLIGINHGR 97 (291)
T ss_pred -----HHHHHHHHhcCCC-----CCEEEEcCCC
Confidence 2223333332334 9999999886
No 153
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=85.78 E-value=3.3 Score=38.15 Aligned_cols=83 Identities=17% Similarity=0.113 Sum_probs=50.7
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCC--------hhhHHHhcccCCEEEEcCCCCCCc
Q 023716 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP--------EDVLFEKLELVNGVLYTGGWAKDG 133 (278)
Q Consensus 62 vIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~--------~~~l~~~l~~iDGlIl~GG~~~~p 133 (278)
.|||..++... ...-+.....+|+++.|..+........ ........+.+|-+|.-||..
T Consensus 6 ~v~iv~~~~k~---------~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDG--- 73 (295)
T PRK01231 6 NIGLIGRLGSS---------SVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIVVGGDG--- 73 (295)
T ss_pred EEEEEecCCCH---------HHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEEEeCcH---
Confidence 59999887532 2444567788999999998877543210 001112233578888888865
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCcEEEEechH
Q 023716 134 LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (278)
Q Consensus 134 ~~~~~~~~li~~al~~~~~g~~~PVLGIClG~ 165 (278)
+.-...+.....+ .||+||-.|.
T Consensus 74 ----t~l~~~~~~~~~~-----~Pvlgin~G~ 96 (295)
T PRK01231 74 ----SLLGAARALARHN-----VPVLGINRGR 96 (295)
T ss_pred ----HHHHHHHHhcCCC-----CCEEEEeCCc
Confidence 2222333332334 9999999885
No 154
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=85.35 E-value=6.2 Score=38.04 Aligned_cols=77 Identities=17% Similarity=0.211 Sum_probs=44.4
Q ss_pred CCCCCcEEEEeCCCCCC--CCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCC-ChhhHH----HhcccCCEEEEcCC
Q 023716 56 KLNYRPVIGIVTHPGDG--ASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE-PEDVLF----EKLELVNGVLYTGG 128 (278)
Q Consensus 56 ~~~~rPvIGIl~~~~~~--~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~-~~~~l~----~~l~~iDGlIl~GG 128 (278)
.+..||.|||.+.-..- ....+..++=...........+++.|++++-+.... +++.+. +.++.+|-||.+||
T Consensus 172 ~V~rkprV~IisTGdELv~~~~~l~~gqI~dsN~~~l~a~l~~~G~e~~~~giv~Dd~~~l~~~i~~a~~~~DviItsGG 251 (404)
T COG0303 172 KVYRKPRVAIISTGDELVEPGQPLEPGQIYDSNSYMLAALLERAGGEVVDLGIVPDDPEALREAIEKALSEADVIITSGG 251 (404)
T ss_pred EEecCCEEEEEecCccccCCCCCCCCCeEEecCHHHHHHHHHHcCCceeeccccCCCHHHHHHHHHHhhhcCCEEEEeCC
Confidence 34678999997754221 111111111112222234468899999888775443 334443 44566999999999
Q ss_pred CCCC
Q 023716 129 WAKD 132 (278)
Q Consensus 129 ~~~~ 132 (278)
.++.
T Consensus 252 ~SvG 255 (404)
T COG0303 252 VSVG 255 (404)
T ss_pred ccCc
Confidence 8753
No 155
>PRK01215 competence damage-inducible protein A; Provisional
Probab=85.13 E-value=4.5 Score=36.65 Aligned_cols=68 Identities=24% Similarity=0.202 Sum_probs=38.9
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeC-CCChhhH----HHhcccCCEEEEcCCCC
Q 023716 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIY-NEPEDVL----FEKLELVNGVLYTGGWA 130 (278)
Q Consensus 58 ~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~-~~~~~~l----~~~l~~iDGlIl~GG~~ 130 (278)
|.+|.++|++--..--.|...+ .+..| ..+.+++.|+.+..... .++.+.+ .+.++..|-||++||-.
T Consensus 1 ~~~~~v~Ii~~GdEll~G~i~d-tn~~~----l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVIttGG~g 73 (264)
T PRK01215 1 MDKWFAWIITIGNELLIGRTVN-TNASW----IARRLTYLGYTVRRITVVMDDIEEIVSAFREAIDRADVVVSTGGLG 73 (264)
T ss_pred CCCCEEEEEEEChhccCCeEEE-hhHHH----HHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 4679999976532212232211 11222 34678999998754432 2233333 34455689999999865
No 156
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=84.77 E-value=3.8 Score=40.49 Aligned_cols=83 Identities=17% Similarity=0.178 Sum_probs=48.9
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHH-HcCCeEEEEeCCCC-----------------hhhHHHhcccCCE
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVE-SAGARVIPLIYNEP-----------------EDVLFEKLELVNG 122 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le-~~Ga~~v~i~~~~~-----------------~~~l~~~l~~iDG 122 (278)
..|||..++... ...-+...+++|++ ..|..+++-+.... .+.+..+...+|-
T Consensus 195 ~~VgIV~n~~k~---------~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~Dl 265 (508)
T PLN02935 195 QTVLIITKPNST---------SVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDL 265 (508)
T ss_pred CEEEEEecCCCH---------HHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCE
Confidence 479999887542 23334567888998 47777776432110 0111112246899
Q ss_pred EEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEech
Q 023716 123 VLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (278)
Q Consensus 123 lIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG 164 (278)
+|.-||.+ +.-...+.....+ +|||||-.|
T Consensus 266 VIsiGGDG-------TlL~Aar~~~~~~-----iPILGIN~G 295 (508)
T PLN02935 266 VITLGGDG-------TVLWAASMFKGPV-----PPVVPFSMG 295 (508)
T ss_pred EEEECCcH-------HHHHHHHHhccCC-----CcEEEEeCC
Confidence 99999965 2222333333334 899999977
No 157
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=83.35 E-value=3.4 Score=39.33 Aligned_cols=48 Identities=10% Similarity=0.020 Sum_probs=33.6
Q ss_pred hcccCCEEEEcCCCCCCcc--chHHHHHHHHHHHHhcCCCCCCcEEEEechHHHH
Q 023716 116 KLELVNGVLYTGGWAKDGL--YYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELL 168 (278)
Q Consensus 116 ~l~~iDGlIl~GG~~~~p~--~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL 168 (278)
...+++-+|+|||.+..-. ..+...+.++..++++ --.||||-|.-.-
T Consensus 46 w~~~~~LlV~PGG~d~~y~~~l~~~g~~~Ir~fV~~G-----G~YlGiCAGaY~a 95 (367)
T PF09825_consen 46 WQSKCALLVMPGGADLPYCRSLNGEGNRRIRQFVENG-----GGYLGICAGAYYA 95 (367)
T ss_pred cccCCcEEEECCCcchHHHHhhChHHHHHHHHHHHcC-----CcEEEECcchhhh
Confidence 3567999999999874211 1122346777777777 7899999997553
No 158
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=82.95 E-value=3.8 Score=33.10 Aligned_cols=90 Identities=19% Similarity=0.302 Sum_probs=54.7
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCC------------------hhhHHHhcccCCEE
Q 023716 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP------------------EDVLFEKLELVNGV 123 (278)
Q Consensus 62 vIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~------------------~~~l~~~l~~iDGl 123 (278)
+++|.+.+.. ......+.....+.+++.|+.+..+....- .+.+.+.+..+|++
T Consensus 3 ilii~gS~r~--------~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~i 74 (152)
T PF03358_consen 3 ILIINGSPRK--------NSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGI 74 (152)
T ss_dssp EEEEESSSST--------TSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEE
T ss_pred EEEEECcCCC--------CCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeE
Confidence 5667776642 123555667777888888999988865541 12345567789999
Q ss_pred EEcCCCCCCccchH----HHHHHHHHHHH-hcCCCCCCcEEEEech
Q 023716 124 LYTGGWAKDGLYYA----IVEKVFKKILE-KNDAGDHFPLYAHCLG 164 (278)
Q Consensus 124 Il~GG~~~~p~~~~----~~~~li~~al~-~~~~g~~~PVLGIClG 164 (278)
|+. .|.|+. ..+.++++... ....=.++|+..||-|
T Consensus 75 I~~-----sP~y~~~~s~~lK~~lD~~~~~~~~~~~~K~~~~i~~~ 115 (152)
T PF03358_consen 75 IFA-----SPVYNGSVSGQLKNFLDRLSCWFRRALRGKPVAIIAVG 115 (152)
T ss_dssp EEE-----EEEBTTBE-HHHHHHHHTHHHTHTTTTTTSEEEEEEEE
T ss_pred EEe-----ecEEcCcCChhhhHHHHHhccccccccCCCEEEEEEEe
Confidence 985 344443 34455555431 1123345888888654
No 159
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=81.47 E-value=10 Score=32.73 Aligned_cols=70 Identities=21% Similarity=0.277 Sum_probs=35.5
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCe---EEEEeCCCChhh----HHHhcc--cCCEEEEcCCC
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGAR---VIPLIYNEPEDV----LFEKLE--LVNGVLYTGGW 129 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~---~v~i~~~~~~~~----l~~~l~--~iDGlIl~GG~ 129 (278)
.++.+||++--.....|...+ ... ....+++++.|+. +......++.+. +.+.++ .+|-||.+||-
T Consensus 2 ~~~~~aIItvSd~~~~G~i~D-~ng----~~L~~~L~~~G~~g~~v~~~iVpDd~~~I~~aL~~a~~~~~~DlIITTGGt 76 (193)
T PRK09417 2 DTLKIGLVSISDRASSGVYED-KGI----PALEEWLASALTSPFEIETRLIPDEQDLIEQTLIELVDEMGCDLVLTTGGT 76 (193)
T ss_pred CCcEEEEEEEcCcCCCCceee-chH----HHHHHHHHHcCCCCceEEEEECCCCHHHHHHHHHHHhhcCCCCEEEECCCC
Confidence 456788876543222222211 111 2344677888653 221111223333 334443 68999999997
Q ss_pred CCCc
Q 023716 130 AKDG 133 (278)
Q Consensus 130 ~~~p 133 (278)
...+
T Consensus 77 g~g~ 80 (193)
T PRK09417 77 GPAR 80 (193)
T ss_pred CCCC
Confidence 7543
No 160
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=81.10 E-value=5.3 Score=36.42 Aligned_cols=65 Identities=14% Similarity=0.091 Sum_probs=39.5
Q ss_pred HHHHHHHHHcCCeEEEEeCCCCh--------hhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEE
Q 023716 88 ASYVKFVESAGARVIPLIYNEPE--------DVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~--------~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVL 159 (278)
....+|+++.|..+..-+..... ....+..+.+|-+|.-||.. +.-+..+.+...+ +||+
T Consensus 3 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDG-------T~L~aa~~~~~~~-----~Pil 70 (272)
T PRK02231 3 KNLFHWLKERGYQVLVEKEIAEQLNLPENHLASLEEIGQRAQLAIVIGGDG-------NMLGRARVLAKYD-----IPLI 70 (272)
T ss_pred HHHHHHHHHCCCEEEEecchhhhcCccccccCChHHhCcCCCEEEEECCcH-------HHHHHHHHhccCC-----CcEE
Confidence 45678999999888775432110 01123334689999999965 2222333333334 9999
Q ss_pred EEech
Q 023716 160 AHCLG 164 (278)
Q Consensus 160 GIClG 164 (278)
||-.|
T Consensus 71 gIn~G 75 (272)
T PRK02231 71 GINRG 75 (272)
T ss_pred EEeCC
Confidence 99987
No 161
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=80.79 E-value=7.3 Score=33.61 Aligned_cols=76 Identities=24% Similarity=0.429 Sum_probs=51.3
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCC-----------------------hhhHHHhc
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP-----------------------EDVLFEKL 117 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~-----------------------~~~l~~~l 117 (278)
.+++|+..|.. .....-+.....+.+++.|+.+..+..... .+++.+.+
T Consensus 2 ki~~I~gs~r~--------~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l 73 (207)
T COG0655 2 KILGINGSPRS--------NGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKL 73 (207)
T ss_pred eeeEEEecCCC--------CCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHH
Confidence 36788887753 123555667788899999998887754421 24455557
Q ss_pred ccCCEEEEcCCCCCCccchHHHHHHHHHHHHh
Q 023716 118 ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEK 149 (278)
Q Consensus 118 ~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~ 149 (278)
..+|||||. .|.|++....-++..+++
T Consensus 74 ~~aD~iI~g-----sPvy~g~vsa~~K~fiDR 100 (207)
T COG0655 74 LEADGIIFG-----SPVYFGNVSAQMKAFIDR 100 (207)
T ss_pred HHCCEEEEe-----CCeecCCchHHHHHHHhh
Confidence 779999996 466776666666666666
No 162
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=79.83 E-value=11 Score=31.54 Aligned_cols=67 Identities=19% Similarity=0.137 Sum_probs=37.8
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCC-CChhhHHHhc------ccCCEEEEcCCCCC
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN-EPEDVLFEKL------ELVNGVLYTGGWAK 131 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~-~~~~~l~~~l------~~iDGlIl~GG~~~ 131 (278)
.+|.|||++--.... ... +. . ......++++.|+.+.....- ++.+.+.+.+ +.+|-||.+||-..
T Consensus 3 ~~~rv~vit~~d~~~--~~~-d~-n---~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~ 75 (163)
T TIGR02667 3 IPLRIAILTVSDTRT--EED-DT-S---GQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTGF 75 (163)
T ss_pred CccEEEEEEEeCcCC--ccC-CC-c---HHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCC
Confidence 468899976432211 111 11 1 123445789999987755322 2334444332 35899999999775
Q ss_pred C
Q 023716 132 D 132 (278)
Q Consensus 132 ~ 132 (278)
.
T Consensus 76 g 76 (163)
T TIGR02667 76 T 76 (163)
T ss_pred C
Confidence 3
No 163
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=79.52 E-value=1.5 Score=40.02 Aligned_cols=83 Identities=16% Similarity=0.159 Sum_probs=48.1
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHc-CCeEEEEeCC--------------------------CChhhHH
Q 023716 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA-GARVIPLIYN--------------------------EPEDVLF 114 (278)
Q Consensus 62 vIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~-Ga~~v~i~~~--------------------------~~~~~l~ 114 (278)
.|||..+|.... ...+....++||++. |..+..-... .......
T Consensus 1 kVgii~np~~~~---------~~~~~~~~~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (285)
T PF01513_consen 1 KVGIIANPNKPE---------AIELANELARWLLEKQGIEVLVEGSIAEDILEAIKKRYEVISVEKKLKTLDDTRNALEE 71 (285)
T ss_dssp -EEEEESSCGHC---------CCHHHHHHHHHHHHTTTEEEEEEHHHHHSHCCCSHSCCCCCTTSHCCCCTCEEEECCHH
T ss_pred CEEEEEcCCCHH---------HHHHHHHHHHHHHhCCCEEEEEChHHHHHHHHhccccccccccccccccccccchhhhh
Confidence 489999986321 334567788999988 4444332110 0000112
Q ss_pred HhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechH
Q 023716 115 EKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (278)
Q Consensus 115 ~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~ 165 (278)
...+.+|-+|.-||.. +.....+.+...+ .||+||-.|-
T Consensus 72 ~~~~~~D~ii~lGGDG-------T~L~~~~~~~~~~-----~Pilgin~G~ 110 (285)
T PF01513_consen 72 MLEEGVDLIIVLGGDG-------TFLRAARLFGDYD-----IPILGINTGT 110 (285)
T ss_dssp HHCCCSSEEEEEESHH-------HHHHHHHHCTTST------EEEEEESSS
T ss_pred hcccCCCEEEEECCCH-------HHHHHHHHhccCC-----CcEEeecCCC
Confidence 2347899999999964 3334444333334 9999999774
No 164
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=79.36 E-value=3.9 Score=33.20 Aligned_cols=40 Identities=25% Similarity=0.332 Sum_probs=26.5
Q ss_pred CCCCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEe
Q 023716 56 KLNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLI 105 (278)
Q Consensus 56 ~~~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~ 105 (278)
....||+|||+|-..-... .=| +..-+||+++|+.++...
T Consensus 87 ~~~~k~vIgvVTK~DLaed---------~dI-~~~~~~L~eaGa~~IF~~ 126 (148)
T COG4917 87 DIGVKKVIGVVTKADLAED---------ADI-SLVKRWLREAGAEPIFET 126 (148)
T ss_pred cccccceEEEEecccccch---------HhH-HHHHHHHHHcCCcceEEE
Confidence 4567899999997642211 111 234579999999887653
No 165
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=79.32 E-value=6.8 Score=35.72 Aligned_cols=82 Identities=18% Similarity=0.205 Sum_probs=49.5
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCC------hhhHHHhc-ccCCEEEEcCCCCCCcc
Q 023716 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP------EDVLFEKL-ELVNGVLYTGGWAKDGL 134 (278)
Q Consensus 62 vIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~------~~~l~~~l-~~iDGlIl~GG~~~~p~ 134 (278)
.|||..+++.. ...-+.....+|+++.|..+.+...... ........ +.+|.+|.-||..
T Consensus 2 ~v~iv~~~~k~---------~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDG---- 68 (277)
T PRK03708 2 RFGIVARRDKE---------EALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDG---- 68 (277)
T ss_pred EEEEEecCCCH---------HHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcH----
Confidence 38888877532 2334466788899999998887642110 00000111 3689999999965
Q ss_pred chHHHHHHHHHHHHhcCCCCCCcEEEEechH
Q 023716 135 YYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (278)
Q Consensus 135 ~~~~~~~li~~al~~~~~g~~~PVLGIClG~ 165 (278)
+.-..++ ....+ +||+||-.|-
T Consensus 69 ---TlL~a~~-~~~~~-----~pi~gIn~G~ 90 (277)
T PRK03708 69 ---TILRIEH-KTKKD-----IPILGINMGT 90 (277)
T ss_pred ---HHHHHHH-hcCCC-----CeEEEEeCCC
Confidence 2222333 22334 9999999886
No 166
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=78.91 E-value=22 Score=30.95 Aligned_cols=71 Identities=14% Similarity=0.133 Sum_probs=40.3
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCc
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFP 157 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~P 157 (278)
..-+.....+.+++.|..+++.....+.+. +..+. .++||+|+.+....++. .....++.+.+++ +|
T Consensus 14 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~---~~~~~i~~~~~~~-----ip 85 (273)
T cd06292 14 FPAFAEAIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISSLHADTH---ADHSHYERLAERG-----LP 85 (273)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCCCCCccc---chhHHHHHHHhCC-----CC
Confidence 344456677888889999887765433322 22222 46999999764321111 1123344444555 77
Q ss_pred EEEE
Q 023716 158 LYAH 161 (278)
Q Consensus 158 VLGI 161 (278)
+.-+
T Consensus 86 vV~i 89 (273)
T cd06292 86 VVLV 89 (273)
T ss_pred EEEE
Confidence 7655
No 167
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=78.62 E-value=15 Score=29.79 Aligned_cols=44 Identities=25% Similarity=0.243 Sum_probs=29.5
Q ss_pred HHHHHHHHcCCeEEEEeCC-CChhhHHH----hcccCCEEEEcCCCCCC
Q 023716 89 SYVKFVESAGARVIPLIYN-EPEDVLFE----KLELVNGVLYTGGWAKD 132 (278)
Q Consensus 89 syv~~le~~Ga~~v~i~~~-~~~~~l~~----~l~~iDGlIl~GG~~~~ 132 (278)
...+++++.|+++.....- ++.+.+.+ .++.+|-||.+||....
T Consensus 31 ~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g~g 79 (144)
T TIGR00177 31 LLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTGVG 79 (144)
T ss_pred HHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCCCC
Confidence 4556889999988755433 33444443 34578999999997653
No 168
>PLN02727 NAD kinase
Probab=78.28 E-value=7 Score=41.38 Aligned_cols=83 Identities=14% Similarity=0.035 Sum_probs=49.9
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHc-CCeEEEEeCCCCh---------------hhHHHhcccCCEEE
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA-GARVIPLIYNEPE---------------DVLFEKLELVNGVL 124 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~-Ga~~v~i~~~~~~---------------~~l~~~l~~iDGlI 124 (278)
..|||++.+.+ .........++||.+. |..+++-+..... ....+..+.+|.+|
T Consensus 679 rtVgIV~K~~~----------ea~~~~~eL~~~L~~~~gi~V~VE~~~a~~l~~~~~~~~~~~~~~~~~~el~~~~DLVI 748 (986)
T PLN02727 679 KTVLLLKKLGQ----------ELMEEAKEVASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDLHERVDFVA 748 (986)
T ss_pred CEEEEEcCCcH----------HHHHHHHHHHHHHHhCCCeEEEEecchHHHhhccccccccceecccchhhcccCCCEEE
Confidence 48999998754 1233456678999987 8777653321110 01122234689999
Q ss_pred EcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechH
Q 023716 125 YTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (278)
Q Consensus 125 l~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~ 165 (278)
.-||.+ +.-...+.....+ +||+||-+|.
T Consensus 749 vLGGDG-------TlLrAar~~~~~~-----iPILGINlGr 777 (986)
T PLN02727 749 CLGGDG-------VILHASNLFRGAV-----PPVVSFNLGS 777 (986)
T ss_pred EECCcH-------HHHHHHHHhcCCC-----CCEEEEeCCC
Confidence 999965 2222333333345 9999999884
No 169
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=78.12 E-value=16 Score=35.19 Aligned_cols=78 Identities=14% Similarity=0.118 Sum_probs=42.2
Q ss_pred CCCCCcEEEEeCCCCCC-CCCC-CCCCCchhhhHHHHHHHHHHcCCeEEEEeCC-CChhhHHHh----cccCCEEEEcCC
Q 023716 56 KLNYRPVIGIVTHPGDG-ASGR-LNNATNASYIAASYVKFVESAGARVIPLIYN-EPEDVLFEK----LELVNGVLYTGG 128 (278)
Q Consensus 56 ~~~~rPvIGIl~~~~~~-~~~~-~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~-~~~~~l~~~----l~~iDGlIl~GG 128 (278)
.+..||.|||++.-..- ..+. ...+.-+.........++++.|+.++.+... ++.+.+.+. .+.+|-||.+||
T Consensus 173 ~V~~~prV~iistGdEl~~~~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DlvIttGG 252 (411)
T PRK10680 173 PVVRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGG 252 (411)
T ss_pred EecCCCEEEEEccCCeEeCCCCCCCCCEEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhccCCCEEEEcCC
Confidence 44678999997643210 0000 0111111111112345789999987765332 344445443 356899999999
Q ss_pred CCCCc
Q 023716 129 WAKDG 133 (278)
Q Consensus 129 ~~~~p 133 (278)
-...+
T Consensus 253 ~S~G~ 257 (411)
T PRK10680 253 VSVGE 257 (411)
T ss_pred CCCCC
Confidence 77543
No 170
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=77.68 E-value=16 Score=35.33 Aligned_cols=79 Identities=9% Similarity=0.048 Sum_probs=42.4
Q ss_pred CCCCCCCcEEEEeCCCCCCC-CCC-CCCCCchhhhHHHHHHHHHHcCCeEEEEeCC-CChhhHHH----hcccCCEEEEc
Q 023716 54 DSKLNYRPVIGIVTHPGDGA-SGR-LNNATNASYIAASYVKFVESAGARVIPLIYN-EPEDVLFE----KLELVNGVLYT 126 (278)
Q Consensus 54 ~~~~~~rPvIGIl~~~~~~~-~~~-~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~-~~~~~l~~----~l~~iDGlIl~ 126 (278)
.-.+..||.|||++--..-. .+. ...+.-..-.......++++.|+.++..... ++.+.+.+ .++.+|-||++
T Consensus 187 ~V~V~~~prV~IisTGdEl~~~g~~~~~g~i~dsN~~~L~a~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIItT 266 (419)
T PRK14690 187 RVSVRRPLRVAVLSTGDELVEPGALAEVGQIYDANRPMLLALARRWGHAPVDLGRVGDDRAALAARLDRAAAEADVILTS 266 (419)
T ss_pred eeEeecCCEEEEEEccccccCCCCCCCCCeEEeCHHHHHHHHHHHCCCEEEEEeeeCCCHHHHHHHHHHhCccCCEEEEc
Confidence 33456789999976532110 000 0011111111122345788999988755332 33444443 34568999999
Q ss_pred CCCCCC
Q 023716 127 GGWAKD 132 (278)
Q Consensus 127 GG~~~~ 132 (278)
||-...
T Consensus 267 GG~S~G 272 (419)
T PRK14690 267 GGASAG 272 (419)
T ss_pred CCccCC
Confidence 997753
No 171
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=76.62 E-value=10 Score=35.05 Aligned_cols=82 Identities=18% Similarity=0.235 Sum_probs=48.2
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChh---hH-HHhcccCCEEEEcCCCCCCccch
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPED---VL-FEKLELVNGVLYTGGWAKDGLYY 136 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~---~l-~~~l~~iDGlIl~GG~~~~p~~~ 136 (278)
..|++..+++.. ....+....++++++.|..+.+........ .. ....+.+|-+|.-||..
T Consensus 4 kkv~lI~n~~~~---------~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDG------ 68 (305)
T PRK02645 4 KQVIIAYKAGSS---------QAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVLGGDG------ 68 (305)
T ss_pred CEEEEEEeCCCH---------HHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEECCcH------
Confidence 357887776421 122345667889999999987765322110 01 11223588899888865
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 137 AIVEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 137 ~~~~~li~~al~~~~~g~~~PVLGICl 163 (278)
+.-...+.....+ .|++||-.
T Consensus 69 -T~l~~~~~~~~~~-----~pv~gin~ 89 (305)
T PRK02645 69 -TVLAAARHLAPHD-----IPILSVNV 89 (305)
T ss_pred -HHHHHHHHhccCC-----CCEEEEec
Confidence 2223333333345 99999998
No 172
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=76.19 E-value=26 Score=30.52 Aligned_cols=47 Identities=11% Similarity=0.044 Sum_probs=29.7
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCCC
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~ 129 (278)
..-+.....+.+++.|..++......+++. +..+. .++||+|+.++.
T Consensus 14 ~~~~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~ 65 (269)
T cd06281 14 LAQLFSGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPGD 65 (269)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCC
Confidence 334456677888889999887654433322 22222 479999998764
No 173
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=76.12 E-value=32 Score=29.94 Aligned_cols=66 Identities=15% Similarity=0.246 Sum_probs=39.4
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCCC-hhhHHHhc--ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEE
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNEP-EDVLFEKL--ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~~-~~~l~~~l--~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVL 159 (278)
...+.....+.+++.|..+.+...+.. .+.+.+.+ .++||+|+.+... +. ..++.+.+.+ +|+.
T Consensus 25 ~~~~~~gi~~~~~~~g~~~~v~~~~~~~~~~~~~~l~~~~~dgiii~~~~~-~~-------~~~~~~~~~~-----ipvV 91 (275)
T cd06295 25 FLSLLGGIADALAERGYDLLLSFVSSPDRDWLARYLASGRADGVILIGQHD-QD-------PLPERLAETG-----LPFV 91 (275)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCchhHHHHHHHHHhCCCCEEEEeCCCC-Ch-------HHHHHHHhCC-----CCEE
Confidence 333445566778889999887765433 33344434 4799999976432 11 2345555556 7765
Q ss_pred EE
Q 023716 160 AH 161 (278)
Q Consensus 160 GI 161 (278)
.+
T Consensus 92 ~~ 93 (275)
T cd06295 92 VW 93 (275)
T ss_pred EE
Confidence 43
No 174
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=76.03 E-value=7.4 Score=29.66 Aligned_cols=54 Identities=15% Similarity=0.150 Sum_probs=30.5
Q ss_pred CeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEech
Q 023716 99 ARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (278)
Q Consensus 99 a~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG 164 (278)
...++.+-+...-.+......+.+|||+||...+ +.+++.+.+.+ +||+.+=..
T Consensus 41 ~~lvIt~gdR~di~~~a~~~~i~~iIltg~~~~~-------~~v~~la~~~~-----i~vi~t~~d 94 (105)
T PF07085_consen 41 GDLVITPGDREDIQLAAIEAGIACIILTGGLEPS-------EEVLELAKELG-----IPVISTPYD 94 (105)
T ss_dssp TEEEEEETT-HHHHHHHCCTTECEEEEETT-----------HHHHHHHHHHT------EEEE-SS-
T ss_pred CeEEEEeCCcHHHHHHHHHhCCCEEEEeCCCCCC-------HHHHHHHHHCC-----CEEEEECCC
Confidence 4455565554332223344678999999987633 35777788888 999876443
No 175
>PLN02929 NADH kinase
Probab=76.03 E-value=7.3 Score=36.06 Aligned_cols=60 Identities=10% Similarity=0.086 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEech
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG 164 (278)
....++|++.|..+..+.- .++......+|-+|.-||.. +.-...+.+ ..+ +||+||-.|
T Consensus 37 ~~~~~~L~~~gi~~~~v~r----~~~~~~~~~~Dlvi~lGGDG-------T~L~aa~~~-~~~-----iPvlGIN~G 96 (301)
T PLN02929 37 NFCKDILQQKSVDWECVLR----NELSQPIRDVDLVVAVGGDG-------TLLQASHFL-DDS-----IPVLGVNSD 96 (301)
T ss_pred HHHHHHHHHcCCEEEEeec----cccccccCCCCEEEEECCcH-------HHHHHHHHc-CCC-----CcEEEEECC
Confidence 4567799999998855431 11233467899999999965 222233333 344 999999998
No 176
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=74.97 E-value=17 Score=31.38 Aligned_cols=61 Identities=13% Similarity=0.130 Sum_probs=44.5
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhc
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKN 150 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~ 150 (278)
....+.++..|+.++...++ +.+.+.+.|+.+|.|++.-+... +........+++.|.+.+
T Consensus 34 ~~~~~~l~~~g~~vv~~d~~-~~~~l~~al~g~d~v~~~~~~~~-~~~~~~~~~li~Aa~~ag 94 (233)
T PF05368_consen 34 SDRAQQLQALGAEVVEADYD-DPESLVAALKGVDAVFSVTPPSH-PSELEQQKNLIDAAKAAG 94 (233)
T ss_dssp HHHHHHHHHTTTEEEES-TT--HHHHHHHHTTCSEEEEESSCSC-CCHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhcccceEeecccC-CHHHHHHHHcCCceEEeecCcch-hhhhhhhhhHHHhhhccc
Confidence 34567788899998877765 56778889999999998877553 333444567888888877
No 177
>PRK13017 dihydroxy-acid dehydratase; Provisional
Probab=74.85 E-value=22 Score=36.02 Aligned_cols=103 Identities=17% Similarity=0.197 Sum_probs=62.1
Q ss_pred CCCCCCCCC-CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCC------------ChhhHHH-
Q 023716 50 CPVPDSKLN-YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE------------PEDVLFE- 115 (278)
Q Consensus 50 ~~~~~~~~~-~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~------------~~~~l~~- 115 (278)
+.-++...+ .||+|||.+...+...+ ...-.-++....+-++++|+.++.++... +.|.+.+
T Consensus 36 ~G~~~ed~~~~KP~IgI~ns~se~~Pc----h~hl~~la~~vk~gI~~aGG~p~ef~ti~v~d~~~~~~~l~sRelIAd~ 111 (596)
T PRK13017 36 YGLTREELQSGKPIIGIAQTGSDLSPC----NRHHLELAERVKEGIRDAGGIPMEFPVHPIQETGKRPTAALDRNLAYLG 111 (596)
T ss_pred cCCChHHhccCCCEEEEEecccCCcCc----hhhHHHHHHHHHHHHHHcCCeeEecccccccccCCCcccccCHHHHHHH
Confidence 444566665 79999999877553322 12233344556678889999998775432 2222222
Q ss_pred ---hc--ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHH
Q 023716 116 ---KL--ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFEL 167 (278)
Q Consensus 116 ---~l--~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~Ql 167 (278)
.+ ..+||+|+-||-|+... ..+-.+...| +|-+=++-|-++
T Consensus 112 iE~~~~a~~~Dg~V~i~gCDK~~P------G~lMaaarln-----iP~i~v~GG~m~ 157 (596)
T PRK13017 112 LVEILYGYPLDGVVLTTGCDKTTP------ACLMAAATVD-----LPAIVLSGGPML 157 (596)
T ss_pred HHHHHhcCCcceEEEeccCCCccH------HHHHHHHhcC-----CCEEEEeCCCcC
Confidence 22 35899999999985321 2333455566 887777666443
No 178
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=74.79 E-value=25 Score=35.17 Aligned_cols=93 Identities=14% Similarity=0.130 Sum_probs=55.9
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCC-----------------ChhhHHH----hc
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE-----------------PEDVLFE----KL 117 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~-----------------~~~~l~~----~l 117 (278)
.||+|||.+...+...+ .....-++....+-++++|+.+..++... ++|.+.+ .+
T Consensus 10 ~kP~IgI~ns~~e~~pc----h~hl~~l~~~vk~gv~~aGg~p~ef~ti~v~Dgi~~g~~GM~ySL~SRelIAdsiE~~~ 85 (535)
T TIGR00110 10 GKPFIGVANSYTTIVPG----HMHLRDLAQAVKEGIEAAGGVAFEFNTIAVCDGIAMGHEGMKYSLPSREIIADSVETMV 85 (535)
T ss_pred CCCEEEEEeccccCcCc----hhhHHHHHHHHHHHHHHcCCeeEEecCCcCccccccCCcccchhhhhHHHHHHHHHHHH
Confidence 59999999887654332 12233344556678888999999885433 1222222 11
Q ss_pred --ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHH
Q 023716 118 --ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFE 166 (278)
Q Consensus 118 --~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~Q 166 (278)
..+||+|+-||-|+..+ ..+-.+...| +|-+=+.-|-+
T Consensus 86 ~~~~~Dg~v~l~~CDK~~P------G~lMaaarln-----iP~i~v~gGpm 125 (535)
T TIGR00110 86 NAHRFDGLVCIPSCDKITP------GMLMAAARLN-----IPSIFVTGGPM 125 (535)
T ss_pred hcCCcceEEEeccCCCCcH------HHHHHHHhcC-----CCEEEEeCCCc
Confidence 35899999999885211 2333345556 77776655543
No 179
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=74.49 E-value=21 Score=29.22 Aligned_cols=43 Identities=28% Similarity=0.323 Sum_probs=28.3
Q ss_pred HHHHHHHcCCeEEEEeCC-CChhhHHH----hcc--cCCEEEEcCCCCCC
Q 023716 90 YVKFVESAGARVIPLIYN-EPEDVLFE----KLE--LVNGVLYTGGWAKD 132 (278)
Q Consensus 90 yv~~le~~Ga~~v~i~~~-~~~~~l~~----~l~--~iDGlIl~GG~~~~ 132 (278)
..+++++.|+.+.....- ++++.+.+ .++ ..|-||.+||....
T Consensus 25 l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~g 74 (152)
T cd00886 25 LVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTGLA 74 (152)
T ss_pred HHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCC
Confidence 446789999987655322 33444444 334 68999999997653
No 180
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=74.21 E-value=19 Score=34.41 Aligned_cols=77 Identities=21% Similarity=0.251 Sum_probs=42.5
Q ss_pred CCCCCcEEEEeCCCCCCC-CC-CCCCCCchhhhHHHHHHHHHHcCCeEEEEeCC-CChhhHHH----hcccCCEEEEcCC
Q 023716 56 KLNYRPVIGIVTHPGDGA-SG-RLNNATNASYIAASYVKFVESAGARVIPLIYN-EPEDVLFE----KLELVNGVLYTGG 128 (278)
Q Consensus 56 ~~~~rPvIGIl~~~~~~~-~~-~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~-~~~~~l~~----~l~~iDGlIl~GG 128 (278)
.+..+|.|||++--..-- .+ ....+.-..........++++.|+.++..... ++.+.+.+ .++.+|-||.+||
T Consensus 164 ~V~~~~rv~ii~tGdEl~~~g~~~~~g~i~dsn~~~l~~~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DliittGG 243 (394)
T cd00887 164 PVYRRPRVAIISTGDELVEPGEPLAPGQIYDSNSYMLAALLRELGAEVVDLGIVPDDPEALREALEEALEEADVVITSGG 243 (394)
T ss_pred EEecCCEEEEEeCCCcccCCCCCCCCCEEEEChHHHHHHHHHHCCCEEEEeceeCCCHHHHHHHHHHHhhCCCEEEEeCC
Confidence 345789999976532110 00 01111111222223445788899988766433 33344443 4456899999999
Q ss_pred CCCC
Q 023716 129 WAKD 132 (278)
Q Consensus 129 ~~~~ 132 (278)
....
T Consensus 244 ~s~g 247 (394)
T cd00887 244 VSVG 247 (394)
T ss_pred CCCC
Confidence 7754
No 181
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=73.51 E-value=10 Score=38.16 Aligned_cols=85 Identities=20% Similarity=0.329 Sum_probs=50.2
Q ss_pred Cc-EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCCh------h--hHHHhcccCCEEEEcCCCC
Q 023716 60 RP-VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE------D--VLFEKLELVNGVLYTGGWA 130 (278)
Q Consensus 60 rP-vIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~------~--~l~~~l~~iDGlIl~GG~~ 130 (278)
+| .|||..++... ...-+.....+|+++.|..+..-+..... + .....++.+|.+|.-||..
T Consensus 289 ~~~~i~iv~~~~~~---------~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDG 359 (569)
T PRK14076 289 KPTKFGIVSRIDNE---------EAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIISIGGDG 359 (569)
T ss_pred CCcEEEEEcCCCCH---------HHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEEECCcH
Confidence 44 49999887531 13334566788999999887765321100 0 0001134689999999965
Q ss_pred CCccchHHHHHHHHHHHHhcCCCCCCcEEEEechH
Q 023716 131 KDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (278)
Q Consensus 131 ~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~ 165 (278)
+.-...+.....+ +|||||-.|-
T Consensus 360 -------T~L~aa~~~~~~~-----~PilGin~G~ 382 (569)
T PRK14076 360 -------TVLRASKLVNGEE-----IPIICINMGT 382 (569)
T ss_pred -------HHHHHHHHhcCCC-----CCEEEEcCCC
Confidence 2222333333344 9999999884
No 182
>PF02514 CobN-Mg_chel: CobN/Magnesium Chelatase; InterPro: IPR003672 This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase. CobN may play a role in cobalt insertion reactions and is implicated in the conversion of precorrin-2 to cobyrinic acid in cobalamin biosynthesis []. Magnesium protoporphyrin chelatase is involved in chlorophyll biosynthesis as the third subunit of light-independent protochlorophyllide reductase in bacteria and plants [].; GO: 0009058 biosynthetic process
Probab=73.16 E-value=13 Score=40.41 Aligned_cols=66 Identities=20% Similarity=0.378 Sum_probs=45.8
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCC---ChhhHHHhccc-----CCEEEEcCCC
Q 023716 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE---PEDVLFEKLEL-----VNGVLYTGGW 129 (278)
Q Consensus 58 ~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~---~~~~l~~~l~~-----iDGlIl~GG~ 129 (278)
..+|+|||+.....-.. ....++ ...++.||+.|+.|+++-... ..+.+.+.+.. +|.||-+-+.
T Consensus 69 ~~~P~VgIlfyrs~~~~------g~~~~v-daLI~~LE~~G~nvipvf~~~~~~~~~~i~~~f~~~g~~~vDaIIn~~~f 141 (1098)
T PF02514_consen 69 PNRPTVGILFYRSYWLS------GNTAVV-DALIRALEERGLNVIPVFCSSGPDSQEAIEDYFMDDGKPRVDAIINLTGF 141 (1098)
T ss_pred CCCCEEEEEeehhhhhc------CCcHHH-HHHHHHHHHCCCeEEEEEecCccchHHHHHHHHhhcCCCCceEEEEcCcc
Confidence 46899999987643221 223444 579999999999999987442 34456666655 8999876655
Q ss_pred C
Q 023716 130 A 130 (278)
Q Consensus 130 ~ 130 (278)
.
T Consensus 142 ~ 142 (1098)
T PF02514_consen 142 S 142 (1098)
T ss_pred c
Confidence 4
No 183
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=73.09 E-value=23 Score=35.53 Aligned_cols=94 Identities=17% Similarity=0.128 Sum_probs=58.1
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCC-----------------ChhhH----HHhc
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE-----------------PEDVL----FEKL 117 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~-----------------~~~~l----~~~l 117 (278)
.||+|||.....+...+ ...-.-++....+-++++|+.|..++... +.|.+ +..+
T Consensus 30 ~kP~IgI~ns~se~~Pc----h~hl~~la~~Vk~gi~~aGg~p~ef~ti~~~Dgi~~g~~GM~ysL~sReliA~~iE~~~ 105 (552)
T PRK00911 30 DKPFIGIANSWNEITPC----NIHLNELADAVKEGVRAAGGVPFEFNTIGVSDGIAMGHEGMKYSLVSREVIADSIETVV 105 (552)
T ss_pred cCCEEEEeccccccccc----hhhHHHHHHHHHHHHHHcCCEeEEeCCCccccccccCcccceehhhhHHHHHHHHHHHh
Confidence 69999999887654322 12233345556678888999998885433 11111 1112
Q ss_pred --ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHH
Q 023716 118 --ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFEL 167 (278)
Q Consensus 118 --~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~Ql 167 (278)
..+||+|+-+|-|+..+ ..+-.+...| +|-.=++-|-++
T Consensus 106 ~a~~~Dg~V~l~~CDK~~P------g~lMaaarln-----iPsi~v~gGpm~ 146 (552)
T PRK00911 106 NAHWFDGLVAIPGCDKNMP------GMLMAAARLN-----VPSIFVYGGPIL 146 (552)
T ss_pred hCCCcceEEEeccCCCCcH------HHHHHHHhcC-----CCEEEEeCCCcC
Confidence 35899999999885221 2344455567 888777766544
No 184
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=72.15 E-value=33 Score=29.64 Aligned_cols=47 Identities=13% Similarity=0.197 Sum_probs=31.0
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhc-----ccCCEEEEcCCC
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKL-----ELVNGVLYTGGW 129 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l-----~~iDGlIl~GG~ 129 (278)
..-+.....+++++.|..+.+...+.+.+...+.+ .++||+++.+..
T Consensus 14 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~ 65 (264)
T cd06274 14 FARIAKRLEALARERGYQLLIACSDDDPETERETVETLIARQVDALIVAGSL 65 (264)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 34445667778888999988876654443322222 479999998764
No 185
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=72.00 E-value=19 Score=36.09 Aligned_cols=82 Identities=13% Similarity=0.201 Sum_probs=44.1
Q ss_pred CCCCCCCCCCCcEEEEeCCCCCC-CCCC-CCCCCchhhhHHHHHHHHHHcCCeEEEEeCC-CChhhHHH----hcccCCE
Q 023716 50 CPVPDSKLNYRPVIGIVTHPGDG-ASGR-LNNATNASYIAASYVKFVESAGARVIPLIYN-EPEDVLFE----KLELVNG 122 (278)
Q Consensus 50 ~~~~~~~~~~rPvIGIl~~~~~~-~~~~-~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~-~~~~~l~~----~l~~iDG 122 (278)
+....-.+..||.|||++--..- ..+. +..+.-..........++++.|+.++..+.- ++.+.+.+ .++.+|-
T Consensus 169 ~Gi~~V~V~~rprV~IisTGdELv~pg~~l~~G~I~dsNs~~L~a~l~~~G~~v~~~~iv~Dd~e~i~~~l~~al~~~Dl 248 (546)
T PRK14497 169 LGISSVKVYEKPKIYLIATGDELVEPGNSLSPGKIYESNLHYLYSKLKSEGYKIVGLSLLSDDKESIKNEIKRAISVADV 248 (546)
T ss_pred CCCCEEeeccCCEEEEEEcCCcccCCCCCCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhhcCCE
Confidence 33344456789999997643211 0010 1111111111112334688899987655332 34444544 4456899
Q ss_pred EEEcCCCCC
Q 023716 123 VLYTGGWAK 131 (278)
Q Consensus 123 lIl~GG~~~ 131 (278)
||++||...
T Consensus 249 VIttGGtS~ 257 (546)
T PRK14497 249 LILTGGTSA 257 (546)
T ss_pred EEEcCCccC
Confidence 999999764
No 186
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=71.90 E-value=34 Score=29.51 Aligned_cols=67 Identities=15% Similarity=0.156 Sum_probs=40.1
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCCChh----hHHHhc--ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCC
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNEPED----VLFEKL--ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHF 156 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~~~~----~l~~~l--~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~ 156 (278)
...+.....+++++.|..++....+...+ .+.+.+ .++||+|+.+..... ..+++.+.+.+ +
T Consensus 14 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~-------~~~~~~~~~~~-----i 81 (270)
T cd01545 14 VSEIQLGALDACRDTGYQLVIEPCDSGSPDLAERVRALLQRSRVDGVILTPPLSDN-------PELLDLLDEAG-----V 81 (270)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeCCCCchHHHHHHHHHHHHCCCCEEEEeCCCCCc-------cHHHHHHHhcC-----C
Confidence 44455667788889999988876653322 233323 469999998664211 12344455556 7
Q ss_pred cEEEE
Q 023716 157 PLYAH 161 (278)
Q Consensus 157 PVLGI 161 (278)
|++.+
T Consensus 82 pvv~i 86 (270)
T cd01545 82 PYVRI 86 (270)
T ss_pred CEEEE
Confidence 77654
No 187
>PRK13016 dihydroxy-acid dehydratase; Provisional
Probab=71.11 E-value=25 Score=35.40 Aligned_cols=103 Identities=17% Similarity=0.142 Sum_probs=62.4
Q ss_pred CCCCCCCCCCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCC------------ChhhHHH--
Q 023716 50 CPVPDSKLNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE------------PEDVLFE-- 115 (278)
Q Consensus 50 ~~~~~~~~~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~------------~~~~l~~-- 115 (278)
+.-++.....||+|||.....+...+ ...-.-++....+-++++|+.|..++... ..|.+.+
T Consensus 32 ~G~~~~d~~~KP~IgI~ns~se~~Pc----h~hL~~la~~Vk~gv~~aGG~P~ef~ti~v~Dgi~~g~sl~~RelIAdsi 107 (577)
T PRK13016 32 MGYAPEDFDGKPVIAILNTWSDANPC----HGHFRERVEDVKRGVLQAGGFPLELPALSLSENFVKPTTMLYRNLLAMET 107 (577)
T ss_pred cCCCHHHHhcCCEEEEEecccCCcCc----hhhHHHHHHHHHHHHHHcCCeeEecccccCcccccCCcccccHHHHHHHH
Confidence 33345555579999999887654322 12233345556678888999998775432 1222221
Q ss_pred --hc--ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHH
Q 023716 116 --KL--ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFEL 167 (278)
Q Consensus 116 --~l--~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~Ql 167 (278)
.+ ..+||+|+-+|-|+.-+ ..+-.+...| +|-+=++-|-++
T Consensus 108 E~~~~a~~~Dg~V~l~~CDK~~P------g~lMaaarln-----iPsI~v~GG~m~ 152 (577)
T PRK13016 108 EELIRSHPVDGAVLMGGCDKTTP------GLVMGAISMG-----LPMIYLPAGPML 152 (577)
T ss_pred HHHHhcCCccceEEeccCCCCcH------HHHHHHHhcC-----CCEEEEecCCCC
Confidence 11 35899999999885211 2344455567 888877766543
No 188
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=70.83 E-value=34 Score=29.02 Aligned_cols=66 Identities=17% Similarity=0.172 Sum_probs=40.6
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCc
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFP 157 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~P 157 (278)
...+.....++++..|..++....+.+.+. +.... .++||+++.+..... .. ++++.+++ +|
T Consensus 14 ~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~~~~-------~~-~~~~~~~~-----ip 80 (264)
T cd06267 14 FAELLRGIEEAAREAGYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPSRLDD-------EL-LEELAALG-----IP 80 (264)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCCcch-------HH-HHHHHHcC-----CC
Confidence 444556677778888988888776654322 22222 479999998765411 11 44555566 77
Q ss_pred EEEE
Q 023716 158 LYAH 161 (278)
Q Consensus 158 VLGI 161 (278)
+..+
T Consensus 81 vv~~ 84 (264)
T cd06267 81 VVLV 84 (264)
T ss_pred EEEe
Confidence 7666
No 189
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=70.58 E-value=21 Score=28.42 Aligned_cols=44 Identities=23% Similarity=0.178 Sum_probs=29.0
Q ss_pred HHHHHHHHcCCeEEEEeCC-CChhhHHH----hcccCCEEEEcCCCCCC
Q 023716 89 SYVKFVESAGARVIPLIYN-EPEDVLFE----KLELVNGVLYTGGWAKD 132 (278)
Q Consensus 89 syv~~le~~Ga~~v~i~~~-~~~~~l~~----~l~~iDGlIl~GG~~~~ 132 (278)
...+++++.|+++...... ++.+.+.+ .++.+|-||.+||-...
T Consensus 23 ~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~g~g 71 (133)
T cd00758 23 ALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGTGVG 71 (133)
T ss_pred HHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCCCCC
Confidence 3456789999987765332 33344433 44568999999997754
No 190
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=70.43 E-value=37 Score=29.40 Aligned_cols=68 Identities=15% Similarity=0.175 Sum_probs=39.1
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCc
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFP 157 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~P 157 (278)
.+-+.....+.+++.|..++......+.+. +...+ .++||||+..+.. . .....++.+.+++ +|
T Consensus 14 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~vdgii~~~~~~---~---~~~~~i~~~~~~~-----ip 82 (273)
T cd06305 14 DQAYLAGTKAEAEALGGDLRVYDAGGDDAKQADQIDQAIAQKVDAIIIQHGRA---E---VLKPWVKRALDAG-----IP 82 (273)
T ss_pred HHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCh---h---hhHHHHHHHHHcC-----CC
Confidence 334456677888899999887654333322 22222 3799999976432 1 1123455555556 67
Q ss_pred EEEE
Q 023716 158 LYAH 161 (278)
Q Consensus 158 VLGI 161 (278)
+..+
T Consensus 83 vV~~ 86 (273)
T cd06305 83 VVAF 86 (273)
T ss_pred EEEe
Confidence 6544
No 191
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=70.30 E-value=26 Score=35.33 Aligned_cols=101 Identities=19% Similarity=0.179 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCC------------ChhhHHH--
Q 023716 50 CPVPDSKLNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE------------PEDVLFE-- 115 (278)
Q Consensus 50 ~~~~~~~~~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~------------~~~~l~~-- 115 (278)
+.-++.....||+|||.+...+...+ .....-++....+-++++|+.+..++... +.|.+.+
T Consensus 28 ~G~~~ed~~~kP~IgI~ns~se~~Pc----h~hl~~l~~~vk~gi~~aGg~p~ef~ti~v~Dgi~~g~sL~sRelIAdsi 103 (571)
T PRK06131 28 QGYPDELFDGRPIIGICNTWSDLNPC----NAHFRQLAERVKRGVLEAGGFPVEFPVISLGESFLRPTAMLYRNLAAMDV 103 (571)
T ss_pred cCCChHHhccCCEEEEecccccCcCc----hhhHHHHHHHHHHHHHHcCCEEEecCccCccccccCccccccHHHHHHHH
Confidence 33345555559999999877654322 12233445556678889999998775433 1222222
Q ss_pred --hc--ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechH
Q 023716 116 --KL--ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (278)
Q Consensus 116 --~l--~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~ 165 (278)
.+ ..+||+|+-||-|+... ..+-.+...| +|-+=+.-|-
T Consensus 104 E~~~~a~~~Dg~v~i~~CDK~~P------G~lMaa~rln-----iPsi~v~gGp 146 (571)
T PRK06131 104 EEMIRGYPIDGVVLLGGCDKTTP------ALLMGAASVD-----LPAIVLSGGP 146 (571)
T ss_pred HHHHhcCCcceEEEEeeCCCCcH------HHHHHHHhcC-----CCEEEEeCCC
Confidence 22 35899999999885221 2333345556 7776665443
No 192
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=70.04 E-value=39 Score=29.04 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCCC
Q 023716 86 IAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (278)
Q Consensus 86 i~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~ 129 (278)
+.....+.+++.|..++....+.+.+. +..+. .++||+|+.+..
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~ 65 (268)
T cd01575 17 VLQGISDVLEAAGYQLLLGNTGYSPEREEELLRTLLSRRPAGLILTGLE 65 (268)
T ss_pred HHHHHHHHHHHcCCEEEEecCCCCchhHHHHHHHHHHcCCCEEEEeCCC
Confidence 345667788889999888766543322 22222 479999998753
No 193
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=70.03 E-value=44 Score=30.76 Aligned_cols=85 Identities=18% Similarity=0.085 Sum_probs=51.8
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhH----HHhc-ccCCEEEEcCCCCCCc
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVL----FEKL-ELVNGVLYTGGWAKDG 133 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l----~~~l-~~iDGlIl~GG~~~~p 133 (278)
.++.||++..-.+ ....+-+...+.+.+++.|..+++...+.+.+.. ..++ .++||+|+.+...
T Consensus 24 ~~~~Ig~i~~~~~--------~~f~~~~~~gi~~~a~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~~~--- 92 (330)
T PRK10355 24 KEVKIGMAIDDLR--------LERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNG--- 92 (330)
T ss_pred CCceEEEEecCCC--------chHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh---
Confidence 4688999874321 1234445667888889999998887654443322 2222 3799999986421
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCcEEEEe
Q 023716 134 LYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (278)
Q Consensus 134 ~~~~~~~~li~~al~~~~~g~~~PVLGIC 162 (278)
. ...+.++.+.+++ +||.-+.
T Consensus 93 ~---~~~~~l~~~~~~~-----iPvV~id 113 (330)
T PRK10355 93 Q---VLSNVIKEAKQEG-----IKVLAYD 113 (330)
T ss_pred h---hHHHHHHHHHHCC-----CeEEEEC
Confidence 1 1123455555666 7877764
No 194
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=69.74 E-value=25 Score=35.67 Aligned_cols=78 Identities=18% Similarity=0.195 Sum_probs=42.1
Q ss_pred CCCCCCcEEEEeCCCCCC-CCCC-CCCCCchhhhHHHHHHHHHHcCCeEEEEeC-CCChhhHHH----hcccCCEEEEcC
Q 023716 55 SKLNYRPVIGIVTHPGDG-ASGR-LNNATNASYIAASYVKFVESAGARVIPLIY-NEPEDVLFE----KLELVNGVLYTG 127 (278)
Q Consensus 55 ~~~~~rPvIGIl~~~~~~-~~~~-~~~~~~~~yi~~syv~~le~~Ga~~v~i~~-~~~~~~l~~----~l~~iDGlIl~G 127 (278)
-.+..||.|||++.-..- ..+. ...+.-+.........++++.|+.++.... .++.+.+.+ .++.+|-||.+|
T Consensus 362 V~V~~~prV~IistGdEl~~~g~~~~~g~i~dsn~~~L~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIIttG 441 (597)
T PRK14491 362 VPVFRRPKVAVFSTGDEVQAPGETLKPNCIYDSNRFTIKAMAKKLGCEVIDLGIIEDSEAALEATLEQAAAQADVVISSG 441 (597)
T ss_pred EEeccCCEEEEEecCCeeccCCCcCCCCcEEeCCHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhhcCCEEEEcC
Confidence 345678999997643211 0010 001111111122344678999998865432 233444443 445689999999
Q ss_pred CCCCC
Q 023716 128 GWAKD 132 (278)
Q Consensus 128 G~~~~ 132 (278)
|-...
T Consensus 442 G~s~G 446 (597)
T PRK14491 442 GVSVG 446 (597)
T ss_pred CccCC
Confidence 97754
No 195
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=69.71 E-value=48 Score=29.46 Aligned_cols=63 Identities=10% Similarity=-0.036 Sum_probs=37.6
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHH----hc-ccCCEEEEcCC
Q 023716 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFE----KL-ELVNGVLYTGG 128 (278)
Q Consensus 58 ~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~----~l-~~iDGlIl~GG 128 (278)
+.+.+||++..-.. .....-+.....+.+++.|..++......+.+.... .. ..+||+|+.+.
T Consensus 24 ~~~~~I~vi~~~~~--------~~f~~~~~~~i~~~~~~~G~~~~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~ 91 (295)
T PRK10653 24 MAKDTIALVVSTLN--------NPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPT 91 (295)
T ss_pred ccCCeEEEEecCCC--------ChHHHHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 34568998763211 112444556677888889999887654333332222 22 46999999754
No 196
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=69.63 E-value=36 Score=34.61 Aligned_cols=94 Identities=13% Similarity=0.135 Sum_probs=56.7
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCC-----------------ChhhHHH----hc
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE-----------------PEDVLFE----KL 117 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~-----------------~~~~l~~----~l 117 (278)
.||+|||.+...+...+. ..-.-++....+.++++|+.+..++... +.|.+.+ .+
T Consensus 32 ~kP~IgI~ns~~e~~pch----~hl~~la~~vk~gi~~aGG~p~ef~ti~v~Dgit~g~~GM~ySL~SRelIAdsiE~~~ 107 (615)
T PRK12448 32 GKPIIAVVNSFTQFVPGH----VHLKDLGQLVAREIEAAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIADSVEYMV 107 (615)
T ss_pred CCCEEEEEeccccCcCch----hhHHHHHHHHHHHHHHcCCeeeEeccCcccCCcCcCCccceechhhHHHHHHHHHHHh
Confidence 599999998876543221 1222334555667888999988874332 1222222 12
Q ss_pred --ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHH
Q 023716 118 --ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFEL 167 (278)
Q Consensus 118 --~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~Ql 167 (278)
..+||+|+-||-|+.. -..+-.++..| +|-+=+.-|-++
T Consensus 108 ~a~~~Dg~V~i~~CDK~~------PG~lMaaarln-----iPsi~v~gGpm~ 148 (615)
T PRK12448 108 NAHCADAMVCISNCDKIT------PGMLMAALRLN-----IPVVFVSGGPME 148 (615)
T ss_pred hCCCcceEEEeccCCCch------HHHHHHHHhcC-----CCEEEEeCCCcC
Confidence 3589999999988521 12444455567 887766655443
No 197
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=69.21 E-value=13 Score=29.65 Aligned_cols=42 Identities=21% Similarity=0.335 Sum_probs=26.9
Q ss_pred HHHHHHHcCCeEEEEeC-CCChhhHHH----hcccCCEEEEcCCCCC
Q 023716 90 YVKFVESAGARVIPLIY-NEPEDVLFE----KLELVNGVLYTGGWAK 131 (278)
Q Consensus 90 yv~~le~~Ga~~v~i~~-~~~~~~l~~----~l~~iDGlIl~GG~~~ 131 (278)
..+++++.|+.+..... .++.+.+.+ .++..|-||.+||...
T Consensus 23 l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittGG~g~ 69 (135)
T smart00852 23 LAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGTGP 69 (135)
T ss_pred HHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcCCCCC
Confidence 45689999987653321 134444444 3456899999999764
No 198
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=68.92 E-value=47 Score=28.47 Aligned_cols=46 Identities=13% Similarity=0.062 Sum_probs=30.0
Q ss_pred hhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCCC
Q 023716 84 SYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (278)
Q Consensus 84 ~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~ 129 (278)
+-+...+.+.+++.|..++....+.+++. +..+. ..+||+|+.+..
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~~~ 65 (259)
T cd01542 15 SRTVKGILAALYENGYQMLLMNTNFSIEKEIEALELLARQKVDGIILLATT 65 (259)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 44556667788889999888765433332 22222 479999998653
No 199
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=68.78 E-value=22 Score=29.92 Aligned_cols=74 Identities=20% Similarity=0.183 Sum_probs=39.9
Q ss_pred HHHHHHHcCCeEEEEeCC-CChhh----HHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEech
Q 023716 90 YVKFVESAGARVIPLIYN-EPEDV----LFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (278)
Q Consensus 90 yv~~le~~Ga~~v~i~~~-~~~~~----l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG 164 (278)
..+++++.|+.+...... ++++. +.+.++.+|-||.+||-...+ .+...+.+..++. +|+.+.=--
T Consensus 24 l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G~t~--~D~t~ea~~~~~~-------~~l~~~~e~ 94 (170)
T cd00885 24 LAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGLGPTH--DDLTREAVAKAFG-------RPLVLDEEA 94 (170)
T ss_pred HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCCCCCC--CChHHHHHHHHhC-------CCcccCHHH
Confidence 446788999987644222 23333 334456789999999866322 2222334443332 445554444
Q ss_pred HHHHHHHH
Q 023716 165 FELLTMII 172 (278)
Q Consensus 165 ~QlL~~~~ 172 (278)
++.|-..+
T Consensus 95 ~~~i~~~~ 102 (170)
T cd00885 95 LERIEARF 102 (170)
T ss_pred HHHHHHHH
Confidence 44454443
No 200
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=68.64 E-value=11 Score=34.06 Aligned_cols=96 Identities=15% Similarity=0.277 Sum_probs=57.1
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEE---eCC--CChhhHHHhcccCCEEEEcCCCCC--C
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPL---IYN--EPEDVLFEKLELVNGVLYTGGWAK--D 132 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i---~~~--~~~~~l~~~l~~iDGlIl~GG~~~--~ 132 (278)
+-.|.|....+..+ .-|...|.+..|..|+.-+-+ ..- .+.+.+...+++++||+|+||... -
T Consensus 52 ~A~i~I~paas~ep----------~~iG~~y~rife~~gv~~v~ildir~R~~a~~s~~~~~v~~a~gIfftGGDQ~ri~ 121 (293)
T COG4242 52 KAYIVIIPAASREP----------RAIGGNYIRIFEMMGVEEVQILDIRNREDASSSDIVAKVENATGIFFTGGDQLRII 121 (293)
T ss_pred ceEEEEEecCccCh----------hhhccchhhHHHHhccceeEEEeeecccccchHHHHHHHHhCceEEEecCcceeee
Confidence 34677766543211 223456778889988754333 222 234456667889999999999752 1
Q ss_pred ccchHH-HHHHHHHHHHhcCCCCCCcEEEEechHHHHHH
Q 023716 133 GLYYAI-VEKVFKKILEKNDAGDHFPLYAHCLGFELLTM 170 (278)
Q Consensus 133 p~~~~~-~~~li~~al~~~~~g~~~PVLGIClG~QlL~~ 170 (278)
..+.++ ..+.++...... .-|-|+.-|.-+|.-
T Consensus 122 ~~lkdTpl~~~ir~r~r~G-----~avgGTSAGAavM~~ 155 (293)
T COG4242 122 GSLKDTPLMAAIRQRVRRG-----IAVGGTSAGAAVMSD 155 (293)
T ss_pred eeccCCHHHHHHHHHHhcC-----ceecccccchhhcCC
Confidence 111111 223444444444 889999999988864
No 201
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=68.26 E-value=34 Score=29.40 Aligned_cols=66 Identities=12% Similarity=0.076 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEE
Q 023716 86 IAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYA 160 (278)
Q Consensus 86 i~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLG 160 (278)
+.....+.+++.|..++......+.+. +..+. .++||+|+..+.... .+.++.+.+++ +|+..
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~-------~~~~~~~~~~~-----ipvV~ 84 (266)
T cd06282 17 CVQGIQEEARAAGYSLLLATTDYDAEREADAVETLLRQRVDGLILTVADAAT-------SPALDLLDAER-----VPYVL 84 (266)
T ss_pred HHHHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCc-------hHHHHHHhhCC-----CCEEE
Confidence 345566788889999988765433322 12222 469999997654211 12445555566 78766
Q ss_pred Eec
Q 023716 161 HCL 163 (278)
Q Consensus 161 ICl 163 (278)
+..
T Consensus 85 ~~~ 87 (266)
T cd06282 85 AYN 87 (266)
T ss_pred Eec
Confidence 543
No 202
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=67.79 E-value=44 Score=28.73 Aligned_cols=46 Identities=20% Similarity=0.154 Sum_probs=30.1
Q ss_pred hhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCCC
Q 023716 84 SYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (278)
Q Consensus 84 ~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~ 129 (278)
.-+.....+.+++.|..+..+....+.+. +..+. ..+||||+.+..
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 65 (265)
T cd06299 15 ASLATAIQDAASAAGYSTIIGNSDENPETENRYLDNLLSQRVDGIIVVPHE 65 (265)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 33445677788889999888865544332 22223 369999998753
No 203
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=67.72 E-value=9.9 Score=30.85 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=26.4
Q ss_pred cccCCEEEEcCCCCCC--ccchHHHHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 117 LELVNGVLYTGGWAKD--GLYYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 117 l~~iDGlIl~GG~~~~--p~~~~~~~~li~~al~~~~~g~~~PVLGICl 163 (278)
+.++|.|+|-||-++. ..-.+..+++++. ..+ +|+.|+|.
T Consensus 83 ~n~aDvvVLlGGLaMP~~gv~~d~~kel~ee--~~~-----kkliGvCf 124 (154)
T COG4090 83 LNSADVVVLLGGLAMPKIGVTPDDAKELLEE--LGN-----KKLIGVCF 124 (154)
T ss_pred cccccEEEEEcccccCcCCCCHHHHHHHHHh--cCC-----CceEEeeH
Confidence 6679999999997741 1222344566651 233 79999994
No 204
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=65.25 E-value=44 Score=28.24 Aligned_cols=48 Identities=10% Similarity=0.102 Sum_probs=31.6
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCCChhhHH----Hhc-ccCCEEEEcCCCC
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNEPEDVLF----EKL-ELVNGVLYTGGWA 130 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~----~~l-~~iDGlIl~GG~~ 130 (278)
...+.....++++..|...+.++...+.+... ..+ .++||+|+.+...
T Consensus 14 ~~~~~~g~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~ 66 (264)
T cd01537 14 FAQVLKGIEEAAKAAGYQVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDL 66 (264)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 34455667788888999888877655443222 222 3799999987543
No 205
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=65.24 E-value=29 Score=32.75 Aligned_cols=37 Identities=16% Similarity=0.278 Sum_probs=27.0
Q ss_pred cCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHH
Q 023716 119 LVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELL 168 (278)
Q Consensus 119 ~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL 168 (278)
.+|-|++.||.. +.+++.+.+ ... .|||||-.|--+-
T Consensus 100 gVdlIvfaGGDG-------TarDVa~av-~~~-----vPvLGipaGvk~~ 136 (355)
T COG3199 100 GVDLIVFAGGDG-------TARDVAEAV-GAD-----VPVLGIPAGVKNY 136 (355)
T ss_pred CceEEEEeCCCc-------cHHHHHhhc-cCC-----CceEeecccccee
Confidence 589999999976 555666544 334 9999999886543
No 206
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=65.16 E-value=25 Score=31.93 Aligned_cols=70 Identities=11% Similarity=0.004 Sum_probs=43.7
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHHHHH
Q 023716 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEK 141 (278)
Q Consensus 62 vIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~ 141 (278)
.|||..++.. ...-+.....+|+++.|..++.- .+.+|-++.-||.. +.-+
T Consensus 4 ~i~iv~~~~~----------~a~~~~~~l~~~l~~~g~~~~~~------------~~~~D~vi~lGGDG-------T~L~ 54 (264)
T PRK03501 4 NLFFFYKRDK----------ELVEKVKPLKKIAEEYGFTVVDH------------PKNANIIVSIGGDG-------TFLQ 54 (264)
T ss_pred EEEEEECCCH----------HHHHHHHHHHHHHHHCCCEEEcC------------CCCccEEEEECCcH-------HHHH
Confidence 6888876542 13334566778999999877631 13579999999965 2112
Q ss_pred HHHHHHHhcCCCCCCcEEEEec-h
Q 023716 142 VFKKILEKNDAGDHFPLYAHCL-G 164 (278)
Q Consensus 142 li~~al~~~~~g~~~PVLGICl-G 164 (278)
..+.+... +..|++||-. |
T Consensus 55 a~~~~~~~----~~~pilgIn~~G 74 (264)
T PRK03501 55 AVRKTGFR----EDCLYAGISTKD 74 (264)
T ss_pred HHHHhccc----CCCeEEeEecCC
Confidence 22222111 1389999999 6
No 207
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=65.12 E-value=53 Score=28.16 Aligned_cols=47 Identities=17% Similarity=0.036 Sum_probs=30.1
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHH----hc-ccCCEEEEcCCC
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNEPEDVLFE----KL-ELVNGVLYTGGW 129 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~----~l-~~iDGlIl~GG~ 129 (278)
..-+.....+++++.|..++.+..+.+.+...+ +. .++||+|+.+..
T Consensus 14 ~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~ 65 (267)
T cd06284 14 FSEILKGIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRKQADGIILLDGS 65 (267)
T ss_pred HHHHHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEecCC
Confidence 344456677888999999887765544332222 22 369999997653
No 208
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=65.04 E-value=64 Score=27.75 Aligned_cols=65 Identities=14% Similarity=0.146 Sum_probs=38.2
Q ss_pred hhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhcc-cCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcE
Q 023716 84 SYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKLE-LVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPL 158 (278)
Q Consensus 84 ~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l~-~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PV 158 (278)
.-+.....+.+++.|..+++.....+.+. +..+.+ .+||+++.+... . ...++.+.+++ +|+
T Consensus 15 ~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~-~-------~~~~~~l~~~~-----iPv 81 (268)
T cd06273 15 ARVIQAFQETLAAHGYTLLVASSGYDLDREYAQARKLLERGVDGLALIGLDH-S-------PALLDLLARRG-----VPY 81 (268)
T ss_pred HHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeCCCC-C-------HHHHHHHHhCC-----CCE
Confidence 33345667788889998887644333332 222333 599999986432 1 12344455566 887
Q ss_pred EEE
Q 023716 159 YAH 161 (278)
Q Consensus 159 LGI 161 (278)
+.+
T Consensus 82 v~~ 84 (268)
T cd06273 82 VAT 84 (268)
T ss_pred EEE
Confidence 765
No 209
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=64.91 E-value=53 Score=24.56 Aligned_cols=74 Identities=18% Similarity=0.146 Sum_probs=48.2
Q ss_pred HHHHHHHHHcCCeEEEE--eCCCChh--hHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEe-
Q 023716 88 ASYVKFVESAGARVIPL--IYNEPED--VLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHC- 162 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i--~~~~~~~--~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIC- 162 (278)
..|-+.+++.|+..+.. .-..... .++..+.++|.||+.=+.. ++... ..+-+.|.+.+ +|++=.=
T Consensus 13 ~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~v-sH~~~---~~vk~~akk~~-----ip~~~~~~ 83 (97)
T PF10087_consen 13 RRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYV-SHNAM---WKVKKAAKKYG-----IPIIYSRS 83 (97)
T ss_pred HHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCc-ChHHH---HHHHHHHHHcC-----CcEEEECC
Confidence 56889999999999888 2222222 3788889999999876654 33322 23455566667 8987554
Q ss_pred chHHHHHH
Q 023716 163 LGFELLTM 170 (278)
Q Consensus 163 lG~QlL~~ 170 (278)
.|..-|..
T Consensus 84 ~~~~~l~~ 91 (97)
T PF10087_consen 84 RGVSSLER 91 (97)
T ss_pred CCHHHHHH
Confidence 45554433
No 210
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=64.83 E-value=31 Score=32.04 Aligned_cols=74 Identities=15% Similarity=0.185 Sum_probs=42.3
Q ss_pred CCCCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCC-CChhhHHH----hccc-CCEEEEcCCC
Q 023716 56 KLNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN-EPEDVLFE----KLEL-VNGVLYTGGW 129 (278)
Q Consensus 56 ~~~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~-~~~~~l~~----~l~~-iDGlIl~GG~ 129 (278)
....+|.+||++--..-..++.. +-.......++++.|+.++....- .+.+.+.+ .++. +|-||++||-
T Consensus 155 ~v~r~~rv~II~TG~Ev~~G~i~-----D~~~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~ai~~~~~~g~DlIItTGGt 229 (312)
T cd03522 155 APFRPLRVGLIVTGSEVYGGRIE-----DKFGPVLRARLAALGVELVEQVIVPHDEAAIAAAIAEALEAGAELLILTGGA 229 (312)
T ss_pred EecCCCEEEEEEcCCcCCCCcEE-----EhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhcCCCCEEEEeCCc
Confidence 34567999998753222222221 111223446789999987754322 33344443 3344 8999999998
Q ss_pred CCCcc
Q 023716 130 AKDGL 134 (278)
Q Consensus 130 ~~~p~ 134 (278)
..++.
T Consensus 230 svg~~ 234 (312)
T cd03522 230 SVDPD 234 (312)
T ss_pred ccCCc
Confidence 76544
No 211
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=64.83 E-value=48 Score=28.87 Aligned_cols=46 Identities=9% Similarity=-0.016 Sum_probs=29.5
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhc-----ccCCEEEEcCC
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKL-----ELVNGVLYTGG 128 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l-----~~iDGlIl~GG 128 (278)
..-+.....+.+++.|..++....+.+.+...+.+ .++||||+.+.
T Consensus 14 ~~~~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~ 64 (282)
T cd06318 14 FAALTEAAKAHAKALGYELISTDAQGDLTKQIADVEDLLTRGVNVLIINPV 64 (282)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 44455667788889999888765543432222222 47999999753
No 212
>PRK12493 magnesium chelatase subunit H; Provisional
Probab=64.17 E-value=22 Score=39.43 Aligned_cols=99 Identities=20% Similarity=0.174 Sum_probs=53.9
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCC-C-hhhHHHhc--------ccCCEEE-EcCC
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE-P-EDVLFEKL--------ELVNGVL-YTGG 128 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~-~-~~~l~~~l--------~~iDGlI-l~GG 128 (278)
+|+|||+.....-- ..+..++. ..++.||+.|..|+++-... + ...+.+.+ ..+|+|| ++|.
T Consensus 253 ~p~Vgil~~r~~~~------~~d~~~~d-alI~~LE~~G~~vipvf~~gl~~~~~v~~~~~~~~~~~~~~vDaiI~~t~F 325 (1310)
T PRK12493 253 APTVGLLLQRTHLL------TGNDAHYV-ALIQELEARGARVIPAYAGGLDFRKPVEAFFYDPGNPDTPLVDLVVSLTGF 325 (1310)
T ss_pred CCEEEEEEchhhhh------cCCcHHHH-HHHHHHHHCCCeEEEEEecCcccchHHHHHHHhhcccCCCCccEEEEcCcc
Confidence 79999998764321 12345554 68999999999999874431 1 11222222 2479988 4442
Q ss_pred CCCC-ccchHHHHHHHHHHHHhcCCCCCCcEEE-EechHHHHHHH
Q 023716 129 WAKD-GLYYAIVEKVFKKILEKNDAGDHFPLYA-HCLGFELLTMI 171 (278)
Q Consensus 129 ~~~~-p~~~~~~~~li~~al~~~~~g~~~PVLG-IClG~QlL~~~ 171 (278)
.... |.+... ....+...+.| +|++- +-+-+|-+...
T Consensus 326 ~l~ggpa~~~~-~~a~~~L~~ln-----VPvl~~~~l~~qt~~~W 364 (1310)
T PRK12493 326 ALVGGPARQDH-PKAIEALKKLN-----RPYMVALPLVFQTTEEW 364 (1310)
T ss_pred cccCCcccCcc-hhhHHHHHHCC-----CCEEEEEecCCCCHHHH
Confidence 2221 221111 11222333457 99886 44555655554
No 213
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=63.60 E-value=40 Score=28.84 Aligned_cols=89 Identities=16% Similarity=0.225 Sum_probs=50.6
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCC--------------ChhhHHHhcccCCEEEEc
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE--------------PEDVLFEKLELVNGVLYT 126 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~--------------~~~~l~~~l~~iDGlIl~ 126 (278)
.+++|.++|..+. ...-+...+.+.+++.|..+..+.... ....+.+.+..+|||||.
T Consensus 2 kIl~I~GSpr~~S--------~t~~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~ 73 (191)
T PRK10569 2 RVITLAGSPRFPS--------RSSALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVA 73 (191)
T ss_pred EEEEEEcCCCCCC--------hHHHHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEE
Confidence 3788888886422 244456667788888899887763321 111334566788999885
Q ss_pred CCCCCCccch----HHHHHHHHHHHHhcCCCCCCcEEEEech
Q 023716 127 GGWAKDGLYY----AIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (278)
Q Consensus 127 GG~~~~p~~~----~~~~~li~~al~~~~~g~~~PVLGIClG 164 (278)
.|.|. ...+.++++.-. ..=.++|++=||.|
T Consensus 74 -----tP~Y~~s~pg~LKn~iD~l~~--~~l~~K~v~iiat~ 108 (191)
T PRK10569 74 -----TPVYKASFSGALKTLLDLLPE--RALEHKVVLPLATG 108 (191)
T ss_pred -----CCccCCCCCHHHHHHHHhCCh--hhhCCCEEEEEEec
Confidence 33343 334444444311 11223788766554
No 214
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=63.23 E-value=51 Score=28.28 Aligned_cols=47 Identities=13% Similarity=0.084 Sum_probs=29.8
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCCChhhH----HHhc-ccCCEEEEcCCC
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNEPEDVL----FEKL-ELVNGVLYTGGW 129 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l----~~~l-~~iDGlIl~GG~ 129 (278)
..-+.....+.+++.|..++......+.+.. ..+. .++||||+.+..
T Consensus 14 ~~~~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~~ 65 (267)
T cd06283 14 SSLVLKGIEDVCRAHGYQVLVCNSDNDPEKEKEYLESLLAYQVDGLIVNPTG 65 (267)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEeCCC
Confidence 3444566778888899888776554333322 2222 369999998753
No 215
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=62.57 E-value=62 Score=27.89 Aligned_cols=68 Identities=10% Similarity=0.057 Sum_probs=38.4
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCc
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFP 157 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~P 157 (278)
..-+.....+.++..|.++.+.....+.+. +...+ .++||+|+.+... . ...+.++.+.+.+ +|
T Consensus 14 ~~~~~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~---~---~~~~~~~~~~~~~-----ip 82 (267)
T cd06322 14 YIELANAMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPVDS---K---GIRAAIAKAKKAG-----IP 82 (267)
T ss_pred HHHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCh---h---hhHHHHHHHHHCC-----CC
Confidence 344456677788889998877654433322 22222 4799999975421 1 1123445554555 66
Q ss_pred EEEE
Q 023716 158 LYAH 161 (278)
Q Consensus 158 VLGI 161 (278)
+..+
T Consensus 83 vV~~ 86 (267)
T cd06322 83 VITV 86 (267)
T ss_pred EEEE
Confidence 6555
No 216
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=62.02 E-value=29 Score=35.32 Aligned_cols=77 Identities=21% Similarity=0.258 Sum_probs=42.0
Q ss_pred CCCCCcEEEEeCCCCCC-CCCC-CCCCCchhhhHHHHHHHHHHcCCeEEEEeC-CCChhhHHH----hcccCCEEEEcCC
Q 023716 56 KLNYRPVIGIVTHPGDG-ASGR-LNNATNASYIAASYVKFVESAGARVIPLIY-NEPEDVLFE----KLELVNGVLYTGG 128 (278)
Q Consensus 56 ~~~~rPvIGIl~~~~~~-~~~~-~~~~~~~~yi~~syv~~le~~Ga~~v~i~~-~~~~~~l~~----~l~~iDGlIl~GG 128 (278)
.+..+|.|||++--..- ..+. ...+.-.+........++++.|+.++.... .++.+.+.+ .++.+|-||.+||
T Consensus 182 ~v~~~prv~vi~tG~El~~~~~~~~~g~i~dsn~~~l~~~l~~~g~~~~~~~~v~Dd~~~i~~~l~~~~~~~D~iIttGG 261 (633)
T PRK14498 182 PVYKKPRVGIISTGDELVEPGEPLKPGKIYDVNSYTLAAAVEEAGGEPVRYGIVPDDEEELEAALRKALKECDLVLLSGG 261 (633)
T ss_pred EEecCcEEEEEecCccccCCCCCCCCCEEEEChHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEECCC
Confidence 44678999997553210 0000 011111111222345678999998875532 233444443 3356899999999
Q ss_pred CCCC
Q 023716 129 WAKD 132 (278)
Q Consensus 129 ~~~~ 132 (278)
-...
T Consensus 262 ~s~g 265 (633)
T PRK14498 262 TSAG 265 (633)
T ss_pred CcCC
Confidence 7653
No 217
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=61.96 E-value=12 Score=35.71 Aligned_cols=46 Identities=20% Similarity=0.107 Sum_probs=31.7
Q ss_pred hHHHhcccCCEEEEcCCCCCCc-cchHHH-HHHHHHHHHhcCCCCCCcEEEEec
Q 023716 112 VLFEKLELVNGVLYTGGWAKDG-LYYAIV-EKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 112 ~l~~~l~~iDGlIl~GG~~~~p-~~~~~~-~~li~~al~~~~~g~~~PVLGICl 163 (278)
.+++.++.+| +||||-..+|. ..+++. ..+.+.+...+ +|+..||-
T Consensus 276 ~l~~~l~~AD-lVITGEG~~D~Qtl~GK~p~~Va~~A~~~~-----vPviai~G 323 (375)
T TIGR00045 276 DLEQKIKDAD-LVITGEGRLDRQSLMGKAPVGVAKRAKKYG-----VPVIAIAG 323 (375)
T ss_pred CHHHHhcCCC-EEEECCCcccccccCCchHHHHHHHHHHhC-----CeEEEEec
Confidence 3566788888 78888544332 233333 37778888888 99999994
No 218
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=61.93 E-value=50 Score=29.47 Aligned_cols=81 Identities=17% Similarity=0.193 Sum_probs=48.0
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHH
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAI 138 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~ 138 (278)
.+|+||+++..+....+...+.....| ..+.+.|++. ..+..+... .+ ++.+++|.||+.|... .+...
T Consensus 145 ~~~~V~~l~ghge~~~~~~~~~~~~~~--~~l~~~L~~~-y~V~~~~l~--~~---~IP~~~d~Lvi~~P~~---~ls~~ 213 (271)
T PF09822_consen 145 EKPKVYFLTGHGERGGGSMPNSQSTSY--SSLKSLLEKN-YDVEELNLA--NE---EIPDDADVLVIAGPKT---DLSEE 213 (271)
T ss_pred cCceEEEEccccccccccccccCcchH--HHHHHHHHhc-CceeecCCc--cc---ccCCCCCEEEEECCCC---CCCHH
Confidence 579999998765441111111222232 5577888888 888888664 22 2347899999998754 23333
Q ss_pred HHHHHHHHHHhc
Q 023716 139 VEKVFKKILEKN 150 (278)
Q Consensus 139 ~~~li~~al~~~ 150 (278)
....++..+.++
T Consensus 214 e~~~l~~yl~~G 225 (271)
T PF09822_consen 214 ELYALDQYLMNG 225 (271)
T ss_pred HHHHHHHHHHcC
Confidence 345555555533
No 219
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=61.87 E-value=23 Score=32.09 Aligned_cols=67 Identities=15% Similarity=0.257 Sum_probs=41.4
Q ss_pred EEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHHHHHH
Q 023716 63 IGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKV 142 (278)
Q Consensus 63 IGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~l 142 (278)
|||..+. . ....-+.....+|+++.|..+ + .+.+|-++.-||.. +.-+.
T Consensus 3 i~Ii~~~-~---------~~~~~~~~~l~~~l~~~g~~~-----~---------~~~~Dlvi~iGGDG-------T~L~a 51 (265)
T PRK04885 3 VAIISNG-D---------PKSKRVASKLKKYLKDFGFIL-----D---------EKNPDIVISVGGDG-------TLLSA 51 (265)
T ss_pred EEEEeCC-C---------HHHHHHHHHHHHHHHHcCCcc-----C---------CcCCCEEEEECCcH-------HHHHH
Confidence 7888662 1 113335566778898888762 1 13579999999965 22222
Q ss_pred HHHHHH--hcCCCCCCcEEEEechH
Q 023716 143 FKKILE--KNDAGDHFPLYAHCLGF 165 (278)
Q Consensus 143 i~~al~--~~~~g~~~PVLGIClG~ 165 (278)
.+.+.. .+ +|++||-.|.
T Consensus 52 ~~~~~~~~~~-----iPilGIN~G~ 71 (265)
T PRK04885 52 FHRYENQLDK-----VRFVGVHTGH 71 (265)
T ss_pred HHHhcccCCC-----CeEEEEeCCC
Confidence 222222 24 9999999884
No 220
>PRK10342 glycerate kinase I; Provisional
Probab=61.70 E-value=11 Score=36.11 Aligned_cols=47 Identities=17% Similarity=0.008 Sum_probs=31.6
Q ss_pred hHHHhcccCCEEEEcCCCCCC-ccchHHH-HHHHHHHHHhcCCCCCCcEEEEech
Q 023716 112 VLFEKLELVNGVLYTGGWAKD-GLYYAIV-EKVFKKILEKNDAGDHFPLYAHCLG 164 (278)
Q Consensus 112 ~l~~~l~~iDGlIl~GG~~~~-p~~~~~~-~~li~~al~~~~~g~~~PVLGIClG 164 (278)
.+++.++.+| +||||=..+| ...+++. -.+.+.+...+ +|+..||=-
T Consensus 277 ~l~~~l~~AD-LVITGEG~~D~QTl~GK~p~gVa~~A~~~~-----vPviai~G~ 325 (381)
T PRK10342 277 NLEEHIHDCT-LVITGEGRIDSQSIHGKVPIGVANVAKKYH-----KPVIGIAGS 325 (381)
T ss_pred CHHHHhccCC-EEEECCCcCcccccCCccHHHHHHHHHHhC-----CCEEEEecc
Confidence 3566778888 7888844332 2233332 36778888888 999999943
No 221
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=61.43 E-value=57 Score=28.07 Aligned_cols=72 Identities=10% Similarity=0.036 Sum_probs=48.2
Q ss_pred chhhhHHHHHHHHHHcCCeEEEE-eCCCChhhHHHhc-----ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCC
Q 023716 82 NASYIAASYVKFVESAGARVIPL-IYNEPEDVLFEKL-----ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDH 155 (278)
Q Consensus 82 ~~~yi~~syv~~le~~Ga~~v~i-~~~~~~~~l~~~l-----~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~ 155 (278)
....+.....++.++.|..+..+ +...+.+...+.+ +++||||+...... .....++++.+++
T Consensus 12 ~~~~~~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~------~~~~~l~~~~~~g----- 80 (257)
T PF13407_consen 12 FWQQVIKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPD------SLAPFLEKAKAAG----- 80 (257)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSSTT------TTHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHH------HHHHHHHHHhhcC-----
Confidence 34555666778888999999886 5555543332222 46999998765431 1235777788888
Q ss_pred CcEEEEech
Q 023716 156 FPLYAHCLG 164 (278)
Q Consensus 156 ~PVLGIClG 164 (278)
+||..+=.+
T Consensus 81 Ipvv~~d~~ 89 (257)
T PF13407_consen 81 IPVVTVDSD 89 (257)
T ss_dssp SEEEEESST
T ss_pred ceEEEEecc
Confidence 999887666
No 222
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=61.27 E-value=81 Score=28.22 Aligned_cols=66 Identities=9% Similarity=0.078 Sum_probs=38.8
Q ss_pred hhhHHHHHHHHHHcCCeEEEEeCCCChh----hHHHhcc---cCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCC
Q 023716 84 SYIAASYVKFVESAGARVIPLIYNEPED----VLFEKLE---LVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHF 156 (278)
Q Consensus 84 ~yi~~syv~~le~~Ga~~v~i~~~~~~~----~l~~~l~---~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~ 156 (278)
.-+.....+.+++.|..++....+.+.+ .+..++. .+||||+.+... .....++.+.+++ +
T Consensus 16 ~~~~~gi~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~~~-------~~~~~~~~~~~~g-----i 83 (305)
T cd06324 16 NSVARFMQAAADDLGIELEVLYAERDRFLMLQQARTILQRPDKPDALIFTNEKS-------VAPELLRLAEGAG-----V 83 (305)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHhccCCCEEEEcCCcc-------chHHHHHHHHhCC-----C
Confidence 3344556677788899888775543332 2233333 799999976432 1123455566666 7
Q ss_pred cEEEE
Q 023716 157 PLYAH 161 (278)
Q Consensus 157 PVLGI 161 (278)
||.-+
T Consensus 84 PvV~~ 88 (305)
T cd06324 84 KLFLV 88 (305)
T ss_pred eEEEE
Confidence 76655
No 223
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=61.13 E-value=78 Score=28.62 Aligned_cols=63 Identities=22% Similarity=0.235 Sum_probs=37.8
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHH----Hhc-ccCCEEEEcCCC
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLF----EKL-ELVNGVLYTGGW 129 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~----~~l-~~iDGlIl~GG~ 129 (278)
...+||++..... + .....+.....+++++.|..+.+.....+.+... .+. .++||+|+.+..
T Consensus 63 ~~~~Igvv~~~~~-------~-~~~~~i~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 130 (342)
T PRK10014 63 QSGVIGLIVRDLS-------A-PFYAELTAGLTEALEAQGRMVFLLQGGKDGEQLAQRFSTLLNQGVDGVVIAGAA 130 (342)
T ss_pred CCCEEEEEeCCCc-------c-chHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 3468999874311 1 1244455566778888998877765543332222 222 469999998754
No 224
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=61.10 E-value=58 Score=28.83 Aligned_cols=68 Identities=13% Similarity=0.041 Sum_probs=41.3
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHH----hc-ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCc
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNEPEDVLFE----KL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFP 157 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~----~l-~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~P 157 (278)
..-+.....+.+++.|..+.......+.+...+ .. ..+||+|+.+... . ....+++.+.+++ +|
T Consensus 14 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~---~---~~~~~l~~l~~~~-----ip 82 (288)
T cd01538 14 WIRDRPNFEAALKELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPVDG---E---ALASAVEKAADAG-----IP 82 (288)
T ss_pred HHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCh---h---hHHHHHHHHHHCC-----CC
Confidence 344455677788889999988866544332222 22 4799999976432 1 1123555555666 88
Q ss_pred EEEE
Q 023716 158 LYAH 161 (278)
Q Consensus 158 VLGI 161 (278)
|..+
T Consensus 83 vV~~ 86 (288)
T cd01538 83 VIAY 86 (288)
T ss_pred EEEE
Confidence 7666
No 225
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=61.09 E-value=57 Score=28.34 Aligned_cols=69 Identities=10% Similarity=-0.040 Sum_probs=40.0
Q ss_pred hhhHHHHHHHHHHcCCeEEEEeCCCChhhH----HHhc-ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcE
Q 023716 84 SYIAASYVKFVESAGARVIPLIYNEPEDVL----FEKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPL 158 (278)
Q Consensus 84 ~yi~~syv~~le~~Ga~~v~i~~~~~~~~l----~~~l-~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PV 158 (278)
.-+..+..+..++.|..++....+.+.+.. ..++ +++||+|+.+... + .....++.+.+.+ +|+
T Consensus 15 ~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~-~-----~~~~~i~~~~~~~-----iPv 83 (273)
T cd06309 15 TAETKSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPVVE-T-----GWDPVLKEAKAAG-----IPV 83 (273)
T ss_pred HHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCcc-c-----cchHHHHHHHHCC-----CCE
Confidence 334566778888899999887654433322 2222 4699999976432 1 1112445555555 676
Q ss_pred EEEec
Q 023716 159 YAHCL 163 (278)
Q Consensus 159 LGICl 163 (278)
..+=+
T Consensus 84 V~~~~ 88 (273)
T cd06309 84 ILVDR 88 (273)
T ss_pred EEEec
Confidence 65543
No 226
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=60.29 E-value=86 Score=27.11 Aligned_cols=68 Identities=9% Similarity=0.126 Sum_probs=37.0
Q ss_pred hhhhHHHHHHHHHHc---CC--eEEEEeCCCChhh----HHHhc-ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCC
Q 023716 83 ASYIAASYVKFVESA---GA--RVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDA 152 (278)
Q Consensus 83 ~~yi~~syv~~le~~---Ga--~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~ 152 (278)
.+-+.....+.+++. |. .+++.....+.+. +...+ +++||||+.+... . .....++.+.+++
T Consensus 14 ~~~~~~~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~--~----~~~~~l~~~~~~~-- 85 (272)
T cd06300 14 RAQMLDEFKAQAKELKKAGLISEFIVTSADGDVAQQIADIRNLIAQGVDAIIINPASP--T----ALNPVIEEACEAG-- 85 (272)
T ss_pred HHHHHHHHHHHHHhhhccCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh--h----hhHHHHHHHHHCC--
Confidence 344455666777777 87 3444433323222 22222 4799999976431 1 1123455555666
Q ss_pred CCCCcEEEE
Q 023716 153 GDHFPLYAH 161 (278)
Q Consensus 153 g~~~PVLGI 161 (278)
+|+..+
T Consensus 86 ---iPvv~~ 91 (272)
T cd06300 86 ---IPVVSF 91 (272)
T ss_pred ---CeEEEE
Confidence 887775
No 227
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=59.97 E-value=78 Score=27.15 Aligned_cols=46 Identities=17% Similarity=0.249 Sum_probs=30.0
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCC
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGG 128 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG 128 (278)
..-+.....+++++.|..+++.....+.+. +..++ .++||+|+.+.
T Consensus 14 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (268)
T cd06298 14 FAELARGIDDIATMYKYNIILSNSDNDKEKELKVLNNLLAKQVDGIIFMGG 64 (268)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 344556677888889999887765443332 22222 47999999864
No 228
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=59.92 E-value=9.4 Score=33.73 Aligned_cols=47 Identities=15% Similarity=0.190 Sum_probs=27.9
Q ss_pred cccCCEEEEcCCCCCCccchHH----HHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCc
Q 023716 117 LELVNGVLYTGGWAKDGLYYAI----VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKD 175 (278)
Q Consensus 117 l~~iDGlIl~GG~~~~p~~~~~----~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~ 175 (278)
.+.--.||+|||.|.. |-+. ..+.+...+.+. -=.||||-|- .+|+.
T Consensus 47 ~~~T~lLV~pGGaDlp--Y~~~l~g~g~a~i~~yvk~G-----G~fLGiCAG~-----YFg~~ 97 (253)
T COG4285 47 EETTLLLVFPGGADLP--YVQVLQGLGTARIKNYVKEG-----GNFLGICAGG-----YFGSA 97 (253)
T ss_pred hhceEEEEecCCCCch--HHHHhcchhhhhHHHHHhcC-----CeEEEEeccc-----cccce
Confidence 4456789999999852 2222 223333333344 5689999885 45655
No 229
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=59.54 E-value=70 Score=28.00 Aligned_cols=67 Identities=10% Similarity=-0.093 Sum_probs=40.0
Q ss_pred hhhHHHHHHHHHHcCCeEEEEeCCCChhhH----HHhc-ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcE
Q 023716 84 SYIAASYVKFVESAGARVIPLIYNEPEDVL----FEKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPL 158 (278)
Q Consensus 84 ~yi~~syv~~le~~Ga~~v~i~~~~~~~~l----~~~l-~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PV 158 (278)
.-+.....+.+++.|..++....+ +.+.. ..+. .++||||+.+... . ....+++.+.+.+ +|+
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~-~~~~~~~~i~~~~~~~~dgiii~~~~~---~---~~~~~~~~~~~~~-----iPv 82 (289)
T cd01540 15 QTEWKFAKKAAKEKGFTVVKIDVP-DGEKVLSAIDNLGAQGAKGFVICVPDV---K---LGPAIVAKAKAYN-----MKV 82 (289)
T ss_pred HHHHHHHHHHHHHcCCEEEEccCC-CHHHHHHHHHHHHHcCCCEEEEccCch---h---hhHHHHHHHHhCC-----CeE
Confidence 334456678888899988876544 32222 2222 3699999986421 1 1234566666667 787
Q ss_pred EEEe
Q 023716 159 YAHC 162 (278)
Q Consensus 159 LGIC 162 (278)
..+.
T Consensus 83 V~~~ 86 (289)
T cd01540 83 VAVD 86 (289)
T ss_pred EEec
Confidence 7664
No 230
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=59.13 E-value=70 Score=28.53 Aligned_cols=46 Identities=7% Similarity=0.008 Sum_probs=28.7
Q ss_pred hhhhHHHHHHHHHHcCCeEEEE-eCCCChhhHH----Hhc-ccCCEEEEcCC
Q 023716 83 ASYIAASYVKFVESAGARVIPL-IYNEPEDVLF----EKL-ELVNGVLYTGG 128 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i-~~~~~~~~l~----~~l-~~iDGlIl~GG 128 (278)
...+.....+.+++.|..++.+ +.+.+.+... ..+ .++||+|+.+.
T Consensus 14 ~~~i~~gi~~~a~~~g~~v~~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~~~ 65 (298)
T cd06302 14 FNRMEEGAKEAAKELGVDAIYVGPTTADAAGQVQIIEDLIAQGVDAIAVVPN 65 (298)
T ss_pred HHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 4445566777888899988875 4433332222 222 36999999753
No 231
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=58.77 E-value=74 Score=27.50 Aligned_cols=68 Identities=12% Similarity=-0.021 Sum_probs=39.5
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCC--CChhh----HHHhc-ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCC
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYN--EPEDV----LFEKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDH 155 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~--~~~~~----l~~~l-~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~ 155 (278)
...+.....+++++.|..+..+..+ .+.+. +..++ .++||+|+.+... . ...+.++.+.+.+
T Consensus 14 ~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~~~---~---~~~~~l~~~~~~~----- 82 (273)
T cd06310 14 WQAVKAGAEAAAKELGVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPTDA---K---ALVPPLKEAKDAG----- 82 (273)
T ss_pred HHHHHHHHHHHHHHcCCEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCCCh---h---hhHHHHHHHHHCC-----
Confidence 4555667778888999998887532 23222 22222 4799999976432 1 1123445555555
Q ss_pred CcEEEE
Q 023716 156 FPLYAH 161 (278)
Q Consensus 156 ~PVLGI 161 (278)
+|+..+
T Consensus 83 ipvV~~ 88 (273)
T cd06310 83 IPVVLI 88 (273)
T ss_pred CCEEEe
Confidence 676655
No 232
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=58.23 E-value=92 Score=26.95 Aligned_cols=47 Identities=13% Similarity=0.107 Sum_probs=29.4
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCCC
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~ 129 (278)
...+.....+.+++.|..++......+.+. +..++ .++||+|+.++.
T Consensus 14 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~ 65 (273)
T cd01541 14 FPSIIRGIESVLSEKGYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPTK 65 (273)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 344455667788888998887654433321 22222 479999997653
No 233
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=58.04 E-value=1.1e+02 Score=27.32 Aligned_cols=63 Identities=16% Similarity=0.168 Sum_probs=36.4
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCCC
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~ 129 (278)
....||++..... + ....-+.....+.+++.|..+++.....+.+. +..+. ..+||||+.+..
T Consensus 60 ~~~~Igvv~~~~~-------~-~~~~~l~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 127 (328)
T PRK11303 60 RTRSIGLIIPDLE-------N-TSYARIAKYLERQARQRGYQLLIACSDDQPDNEMRCAEHLLQRQVDALIVSTSL 127 (328)
T ss_pred CCceEEEEeCCCC-------C-chHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 3468999863211 1 12333445566778889998887654433322 11121 469999997653
No 234
>PRK09932 glycerate kinase II; Provisional
Probab=57.37 E-value=14 Score=35.31 Aligned_cols=47 Identities=15% Similarity=-0.057 Sum_probs=31.6
Q ss_pred hHHHhcccCCEEEEcCCCCCCc-cchHH-HHHHHHHHHHhcCCCCCCcEEEEech
Q 023716 112 VLFEKLELVNGVLYTGGWAKDG-LYYAI-VEKVFKKILEKNDAGDHFPLYAHCLG 164 (278)
Q Consensus 112 ~l~~~l~~iDGlIl~GG~~~~p-~~~~~-~~~li~~al~~~~~g~~~PVLGIClG 164 (278)
.+++.++++| +||||-..+|. ..+++ --.+.+.+...+ +|+..||=-
T Consensus 277 ~l~~~l~~AD-lVITGEG~~D~Qt~~GK~p~~Va~~A~~~~-----~Pvi~i~G~ 325 (381)
T PRK09932 277 NLEQAVQGAA-LVITGEGRIDSQTAGGKAPLGVASVAKQFN-----VPVIGIAGV 325 (381)
T ss_pred ChHHHhccCC-EEEECCCcccccccCCccHHHHHHHHHHcC-----CCEEEEecc
Confidence 3566778888 78888544332 23333 236777788888 999999953
No 235
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=57.36 E-value=65 Score=26.54 Aligned_cols=56 Identities=16% Similarity=0.064 Sum_probs=42.0
Q ss_pred HHHHHcCCeEEEEeCCCChhhHHHhc--ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhc
Q 023716 92 KFVESAGARVIPLIYNEPEDVLFEKL--ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKN 150 (278)
Q Consensus 92 ~~le~~Ga~~v~i~~~~~~~~l~~~l--~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~ 150 (278)
++++.+|+.++..+...+++++.... +++|.|.+++=.. .+......+++.+.++.
T Consensus 34 ~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g---~h~~l~~~lve~lre~G 91 (143)
T COG2185 34 RALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDG---GHLTLVPGLVEALREAG 91 (143)
T ss_pred HHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEeccc---hHHHHHHHHHHHHHHhC
Confidence 68999999999999888887766544 6899999987432 34444567777777766
No 236
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=57.00 E-value=94 Score=26.58 Aligned_cols=46 Identities=24% Similarity=0.203 Sum_probs=27.6
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCC
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGG 128 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG 128 (278)
...+.....++.++.|..++......+.+. +.... .++||+|+.+.
T Consensus 14 ~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 64 (268)
T cd06289 14 FAELAAGLEEVLEEAGYTVFLANSGEDVERQEQLLSTMLEHGVAGIILCPA 64 (268)
T ss_pred HHHHHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 333445566778888988776643333322 22222 46999999865
No 237
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=56.75 E-value=86 Score=27.07 Aligned_cols=68 Identities=7% Similarity=0.005 Sum_probs=39.6
Q ss_pred hhhhHHHHHHHHHH-cCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCC
Q 023716 83 ASYIAASYVKFVES-AGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHF 156 (278)
Q Consensus 83 ~~yi~~syv~~le~-~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~ 156 (278)
..-+.....+++++ .|..+++.....+.+. +...+ .++||+|+.+... . ....+++.+.+.+ +
T Consensus 14 ~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~---~---~~~~~~~~l~~~~-----i 82 (272)
T cd06301 14 LTLLRNAMKEHAKVLGGVELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPVDT---A---ATAPIVKAANAAG-----I 82 (272)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCch---h---hhHHHHHHHHHCC-----C
Confidence 44555667778888 8888887654333322 22222 3799999976432 1 1124556566666 7
Q ss_pred cEEEE
Q 023716 157 PLYAH 161 (278)
Q Consensus 157 PVLGI 161 (278)
|+..+
T Consensus 83 Pvv~~ 87 (272)
T cd06301 83 PLVYV 87 (272)
T ss_pred eEEEe
Confidence 77654
No 238
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=56.20 E-value=22 Score=26.31 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=27.5
Q ss_pred HHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCC
Q 023716 89 SYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWA 130 (278)
Q Consensus 89 syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~ 130 (278)
...++|++.|..++.+-... .++.+|+++++|...
T Consensus 12 ~v~~~L~~~GyeVv~l~~~~-------~~~~~daiVvtG~~~ 46 (80)
T PF03698_consen 12 NVKEALREKGYEVVDLENEQ-------DLQNVDAIVVTGQDT 46 (80)
T ss_pred HHHHHHHHCCCEEEecCCcc-------ccCCcCEEEEECCCc
Confidence 46689999999999985322 367899999999654
No 239
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=55.73 E-value=99 Score=26.51 Aligned_cols=46 Identities=15% Similarity=0.173 Sum_probs=29.2
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCC
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGG 128 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG 128 (278)
..-+.....+.+++.|..+.......+.+. +..+. ..+||+|+.+.
T Consensus 15 ~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~ 65 (269)
T cd06288 15 AVEIILGAQDAAREHGYLLLVVNTGGDDELEAEAVEALLDHRVDGIIYATM 65 (269)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 333445666788889998887765544322 22222 36999999874
No 240
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=55.46 E-value=1.1e+02 Score=28.73 Aligned_cols=88 Identities=18% Similarity=0.251 Sum_probs=58.6
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCCh---hhHHHhcccCCEEEEcCCCCCCccc
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE---DVLFEKLELVNGVLYTGGWAKDGLY 135 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~---~~l~~~l~~iDGlIl~GG~~~~p~~ 135 (278)
+-..|||+-+|+.. +.........+..++.|..++.......- .....+..+.|.+++|=- ..-
T Consensus 158 nak~Igv~Y~p~E~---------ns~~l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~~p~d----n~i 224 (322)
T COG2984 158 NAKSIGVLYNPGEA---------NSVSLVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIYIPTD----NLI 224 (322)
T ss_pred CCeeEEEEeCCCCc---------ccHHHHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhcCCCcEEEEecc----hHH
Confidence 34579999888542 23344566778888999999998765432 223345577888888733 233
Q ss_pred hHHHHHHHHHHHHhcCCCCCCcEEEEech
Q 023716 136 YAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (278)
Q Consensus 136 ~~~~~~li~~al~~~~~g~~~PVLGIClG 164 (278)
+.....++..+.+++ +|+++==-+
T Consensus 225 ~s~~~~l~~~a~~~k-----iPli~sd~~ 248 (322)
T COG2984 225 VSAIESLLQVANKAK-----IPLIASDTS 248 (322)
T ss_pred HHHHHHHHHHHHHhC-----CCeecCCHH
Confidence 334567888888888 999875443
No 241
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=54.94 E-value=1.2e+02 Score=28.08 Aligned_cols=61 Identities=20% Similarity=0.182 Sum_probs=40.1
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHH----hc-ccCCEEEEcC
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFE----KL-ELVNGVLYTG 127 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~----~l-~~iDGlIl~G 127 (278)
..-+||++..... + ....-+....-+.+++.|..+++...+.+++.... ++ ..+||||+.|
T Consensus 57 ~s~~Ig~i~p~~~-------~-~~~~~i~~gi~~~~~~~gy~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~ 122 (333)
T COG1609 57 RTKTIGLVVPDIT-------N-PFFAEILKGIEEAAREAGYSLLLANTDDDPEKEREYLETLLQKRVDGLILLG 122 (333)
T ss_pred CCCEEEEEeCCCC-------C-chHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 3468999876322 1 12444556667788889999998877765443222 22 4799999999
No 242
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=54.92 E-value=50 Score=30.06 Aligned_cols=75 Identities=13% Similarity=0.199 Sum_probs=42.6
Q ss_pred EEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCCh-----hhHHHhcccCCEEEEcCCCCCCccchH
Q 023716 63 IGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE-----DVLFEKLELVNGVLYTGGWAKDGLYYA 137 (278)
Q Consensus 63 IGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~-----~~l~~~l~~iDGlIl~GG~~~~p~~~~ 137 (278)
|||..++.... ..-+.....+|+ +.|..++.-...... ... ... .+|-+|.-||..
T Consensus 3 i~iv~~~~~~~---------~~~~~~~i~~~l-~~g~~~~~~~~~~~~~~~~~~~~-~~~-~~D~vi~lGGDG------- 63 (271)
T PRK01185 3 VAFVIRKDCKR---------CIKIAKSIIELL-PPDWEIIYEMEAAKALGMDGLDI-EEI-NADVIITIGGDG------- 63 (271)
T ss_pred EEEEecCCCHH---------HHHHHHHHHHHH-hcCCEEEEechhhhhcCcccCcc-ccc-CCCEEEEEcCcH-------
Confidence 89988764311 222345567788 568776653211100 000 112 689999999965
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEech
Q 023716 138 IVEKVFKKILEKNDAGDHFPLYAHCLG 164 (278)
Q Consensus 138 ~~~~li~~al~~~~~g~~~PVLGIClG 164 (278)
+ +++.+.... .||+||-.|
T Consensus 64 T---~L~a~~~~~-----~PilGIN~G 82 (271)
T PRK01185 64 T---ILRTLQRAK-----GPILGINMG 82 (271)
T ss_pred H---HHHHHHHcC-----CCEEEEECC
Confidence 2 333333334 699999998
No 243
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=54.88 E-value=80 Score=27.31 Aligned_cols=69 Identities=10% Similarity=-0.022 Sum_probs=37.3
Q ss_pred hhhhHHHHHHHHHH--cCCeEEEEeCCCChhhHHHh-----cccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCC
Q 023716 83 ASYIAASYVKFVES--AGARVIPLIYNEPEDVLFEK-----LELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDH 155 (278)
Q Consensus 83 ~~yi~~syv~~le~--~Ga~~v~i~~~~~~~~l~~~-----l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~ 155 (278)
..-+.....+++++ .|..++......+.+...+. -.++||+|+.+... . .....++.+.+.+
T Consensus 14 ~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiIi~~~~~---~---~~~~~i~~~~~~~----- 82 (271)
T cd06321 14 FVALAKGAEAAAKKLNPGVKVTVVSADYDLNKQVSQIDNFIAAKVDLILLNAVDS---K---GIAPAVKRAQAAG----- 82 (271)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEccCCCCHHHHHHHHHHHHHhCCCEEEEeCCCh---h---HhHHHHHHHHHCC-----
Confidence 34455566778888 56666555443333222222 24799999975422 1 1123455555556
Q ss_pred CcEEEEe
Q 023716 156 FPLYAHC 162 (278)
Q Consensus 156 ~PVLGIC 162 (278)
+|+.-+=
T Consensus 83 ipvv~~~ 89 (271)
T cd06321 83 IVVVAVD 89 (271)
T ss_pred CeEEEec
Confidence 7776663
No 244
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=54.50 E-value=1.1e+02 Score=26.82 Aligned_cols=46 Identities=20% Similarity=0.177 Sum_probs=28.9
Q ss_pred hhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHh-cccCCEEEEcCCC
Q 023716 84 SYIAASYVKFVESAGARVIPLIYNEPEDVLFEK-LELVNGVLYTGGW 129 (278)
Q Consensus 84 ~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~-l~~iDGlIl~GG~ 129 (278)
..+.....+.+++.|..++........+.+... -.++||+++.+..
T Consensus 20 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~~ 66 (283)
T cd06279 20 SQFLAGVAEVLDAAGVNLLLLPASSEDSDSALVVSALVDGFIVYGVP 66 (283)
T ss_pred HHHHHHHHHHHHHCCCEEEEecCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 333455667888899998887654322222222 2579999998653
No 245
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=54.44 E-value=83 Score=27.10 Aligned_cols=67 Identities=15% Similarity=0.108 Sum_probs=38.8
Q ss_pred hhhHHHHHHHHHHcCCeEEEEeCCCChhhHHH----hc-ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcE
Q 023716 84 SYIAASYVKFVESAGARVIPLIYNEPEDVLFE----KL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPL 158 (278)
Q Consensus 84 ~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~----~l-~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PV 158 (278)
..+.....+++++.|..+++.....+.+...+ ++ ..+||+|+.+... +. ..+.++.+.+++ +|+
T Consensus 16 ~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~--~~----~~~~l~~~~~~~-----iPv 84 (275)
T cd06317 16 TTYNKAFQAAAEEDGVEVIVLDANGDVARQAAQVEDLIAQKVDGIILWPTDG--QA----YIPGLRKAKQAG-----IPV 84 (275)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcCCcCHHHHHHHHHHHHHcCCCEEEEecCCc--cc----cHHHHHHHHHCC-----CcE
Confidence 33445667778889998887654433332222 12 4799999976432 11 123445555666 887
Q ss_pred EEE
Q 023716 159 YAH 161 (278)
Q Consensus 159 LGI 161 (278)
..+
T Consensus 85 V~~ 87 (275)
T cd06317 85 VIT 87 (275)
T ss_pred EEe
Confidence 665
No 246
>PLN03069 magnesiumprotoporphyrin-IX chelatase subunit H; Provisional
Probab=53.75 E-value=45 Score=36.83 Aligned_cols=101 Identities=18% Similarity=0.203 Sum_probs=55.3
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCC-C-hhhHHHh-c------ccCCEEE-EcCC
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE-P-EDVLFEK-L------ELVNGVL-YTGG 128 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~-~-~~~l~~~-l------~~iDGlI-l~GG 128 (278)
.+|+|||+.....--. .+..++ ...++.+|+.|+.|+++-... + ...+.+. + ..+|.|| ++|.
T Consensus 265 ~~p~Vgil~~r~~~~~------~~~~~i-dalI~~LE~~G~~vipvf~~gl~~~~~~~~~~~~~~~~~~~vDaiIn~tgF 337 (1220)
T PLN03069 265 DAPVVGLVLQRSHIVT------GDDGHY-VAVVMELEARGAKVVPIFAGGLDFSGPVERFFYDPITKKPIVDSVVSLTGF 337 (1220)
T ss_pred CCCEEEEEechhhhhc------CCcHHH-HHHHHHHHHCCCeEEEEEecCccccchHHHHHHhhhcCCCCccEEEECCcc
Confidence 4799999987543211 234444 468999999999999874322 1 1112221 2 2489988 4443
Q ss_pred CCC-CccchHHHHHHHHHHHHhcCCCCCCcEEEE-echHHHHHHHH
Q 023716 129 WAK-DGLYYAIVEKVFKKILEKNDAGDHFPLYAH-CLGFELLTMII 172 (278)
Q Consensus 129 ~~~-~p~~~~~~~~li~~al~~~~~g~~~PVLGI-ClG~QlL~~~~ 172 (278)
..+ .|.+.+. ....+...+.| +|++-. -+-+|-+....
T Consensus 338 ~L~ggpa~~~~-~~a~~~L~~ln-----VPvl~~~~l~~qt~e~W~ 377 (1220)
T PLN03069 338 ALVGGPARQDH-PKAIEALKKLD-----VPYLVALPLVFQTTEEWL 377 (1220)
T ss_pred cccCCcccccc-hhhHHHHHHCC-----CCEEEEEecCCCCHHHHH
Confidence 322 2222111 11233333457 999864 35567666553
No 247
>TIGR01196 edd 6-phosphogluconate dehydratase. A close homolog, designated MocB (mannityl opine catabolism), is found in a mannopine catabolism region of a plasmid of Agrobacterium tumefaciens. However, it is not essential for mannopine catabolism, branches within the cluster of 6-phosphogluconate dehydratases (with a short branch length) in a tree rooted by the presence of other dehydyatases. It may represent an authentic 6-phosphogluconate dehydratase, redundant with the chromosomal copy shown to exist in plasmid-cured strains. This model includes mocB above the trusted cutoff, although the designation is somewhat tenuous.
Probab=53.63 E-value=1.3e+02 Score=30.66 Aligned_cols=94 Identities=20% Similarity=0.114 Sum_probs=53.7
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEE-eCCC-----------------ChhhHHH---
Q 023716 57 LNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPL-IYNE-----------------PEDVLFE--- 115 (278)
Q Consensus 57 ~~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i-~~~~-----------------~~~~l~~--- 115 (278)
...||.|||.+...+.-.+ .....-++....+.++++|+.+... ..-. +.|.+..
T Consensus 61 ~~~kP~IgIvns~~d~~p~----h~hl~~~~~~vk~~i~~aGg~~~~~Gg~~a~cDGit~G~~GM~~SL~SRdlIA~sie 136 (601)
T TIGR01196 61 SMKRPNLAIITAYNDMLSA----HQPFKNYPDLIKKALQEANAVAQVAGGVPAMCDGVTQGYDGMELSLFSRDVIAMSTA 136 (601)
T ss_pred ccCCCEEEEEeccccCccc----cccHHHHHHHHHHHHHHCCCEeEEeCCcCccCCCccCCCcccchhhhcHHHHHHHHH
Confidence 3579999999988664332 1222223444556777889988877 2111 2222221
Q ss_pred -hc--ccCCEEEEcCCCCCCccchHHHHHHHHHHHHh-cCCCCCCcEEEEechH
Q 023716 116 -KL--ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEK-NDAGDHFPLYAHCLGF 165 (278)
Q Consensus 116 -~l--~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~-~~~g~~~PVLGIClG~ 165 (278)
.+ ..+||+|+-||-|+.- -.++-.++.. | +|-+=|.-|-
T Consensus 137 ~~l~~~~fDg~v~l~~CDKiv------PG~lMaA~r~g~-----lP~IfV~gGp 179 (601)
T TIGR01196 137 IGLSHNMFDGALFLGVCDKIV------PGLLIGALSFGH-----LPAVFVPSGP 179 (601)
T ss_pred HHhcCCCcceeEEeccCCCCc------HHHHHHHHhcCC-----CCEEEEeCCC
Confidence 12 3589999999988421 1233334444 5 7776666554
No 248
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=53.57 E-value=34 Score=28.95 Aligned_cols=44 Identities=25% Similarity=0.299 Sum_probs=27.9
Q ss_pred HHHHHHHHHcCCeE---EEEeCCCChhhHHH----hccc-CCEEEEcCCCCCCc
Q 023716 88 ASYVKFVESAGARV---IPLIYNEPEDVLFE----KLEL-VNGVLYTGGWAKDG 133 (278)
Q Consensus 88 ~syv~~le~~Ga~~---v~i~~~~~~~~l~~----~l~~-iDGlIl~GG~~~~p 133 (278)
.-.+++|+++|..+ .++| + +.+.+.. ..+. +|.||.+||-.+.+
T Consensus 30 ~~l~~~L~~ag~~~~~~~iV~-D-~~~~I~~~l~~~~~~~~DvvlttGGTG~t~ 81 (169)
T COG0521 30 PLLVELLEEAGHNVAAYTIVP-D-DKEQIRATLIALIDEDVDVVLTTGGTGITP 81 (169)
T ss_pred hHHHHHHHHcCCccceEEEeC-C-CHHHHHHHHHHHhcCCCCEEEEcCCccCCC
Confidence 45778999999876 2333 2 2233332 2233 89999999987543
No 249
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=53.02 E-value=1.1e+02 Score=25.87 Aligned_cols=47 Identities=11% Similarity=0.041 Sum_probs=31.2
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCCC
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~ 129 (278)
...+.....+++++.|..++......+.+. +..++ .++||||+.+..
T Consensus 14 ~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~~ 65 (267)
T cd01536 14 WQAMNKGAEAAAKELGVELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISPVD 65 (267)
T ss_pred HHHHHHHHHHHHHhcCceEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 455666777888889999888776544332 22222 379999997653
No 250
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=52.80 E-value=1.9e+02 Score=26.57 Aligned_cols=62 Identities=8% Similarity=-0.137 Sum_probs=35.7
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCC--CChhh----HHHhc-ccCCEEEEcCC
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN--EPEDV----LFEKL-ELVNGVLYTGG 128 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~--~~~~~----l~~~l-~~iDGlIl~GG 128 (278)
....||++..... + .....+.....+.+++.|..+++.... .+.+. +.... .++||||+.+.
T Consensus 45 ~t~~Igvv~p~~~-------~-~f~~~~~~gi~~aa~~~G~~l~i~~~~~~~~~~~q~~~i~~l~~~~vdgIIl~~~ 113 (343)
T PRK10936 45 KAWKLCALYPHLK-------D-SYWLSVNYGMVEEAKRLGVDLKVLEAGGYYNLAKQQQQLEQCVAWGADAILLGAV 113 (343)
T ss_pred CCeEEEEEecCCC-------c-hHHHHHHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 3468998864311 1 123344556677888899988877432 12222 22222 46999999753
No 251
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=52.66 E-value=1.2e+02 Score=26.38 Aligned_cols=67 Identities=4% Similarity=-0.111 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHHHc-----CCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCC
Q 023716 84 SYIAASYVKFVESA-----GARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAG 153 (278)
Q Consensus 84 ~yi~~syv~~le~~-----Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g 153 (278)
.-+.....+..++. |..++......+.+. +..+. .++||||+.+... . .....++.+.+++
T Consensus 15 ~~~~~gi~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vDgiii~~~~~---~---~~~~~i~~~~~~g--- 85 (274)
T cd06311 15 AGIVWHAQAAAKKLEAAYPDVEFILVTASNDTEQQNAQQDLLINRKIDALVILPFES---A---PLTQPVAKAKKAG--- 85 (274)
T ss_pred HHHHHHHHHHHHHhhhhCCCeEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCc---h---hhHHHHHHHHHCC---
Confidence 33445555666665 566666554333322 22233 3699999976421 1 1224456666666
Q ss_pred CCCcEEEE
Q 023716 154 DHFPLYAH 161 (278)
Q Consensus 154 ~~~PVLGI 161 (278)
+||.-+
T Consensus 86 --IpvV~~ 91 (274)
T cd06311 86 --IFVVVV 91 (274)
T ss_pred --CeEEEE
Confidence 777654
No 252
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=52.54 E-value=99 Score=26.54 Aligned_cols=46 Identities=17% Similarity=0.076 Sum_probs=28.9
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHH----hc-ccCCEEEEcCC
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNEPEDVLFE----KL-ELVNGVLYTGG 128 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~----~l-~~iDGlIl~GG 128 (278)
..-+.....+.+++.|..++......+.+...+ .. ..+||+|+.+.
T Consensus 14 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (265)
T cd06291 14 FSELARAVEKELYKKGYKLILCNSDNDPEKEREYLEMLRQNQVDGIIAGTH 64 (265)
T ss_pred HHHHHHHHHHHHHHCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEEecC
Confidence 334445667888889999887755433322222 22 36999999875
No 253
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=51.89 E-value=1.1e+02 Score=26.20 Aligned_cols=67 Identities=12% Similarity=0.016 Sum_probs=38.9
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCc
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFP 157 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~P 157 (278)
..-+.....+.+++.|..+++...+.+.+. +..+. .++||+|+.+... +. ..++.+.+++ +|
T Consensus 14 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~-~~-------~~~~~~~~~~-----ip 80 (270)
T cd06296 14 ASEVLRGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSARRTDGVILVTPEL-TS-------AQRAALRRTG-----IP 80 (270)
T ss_pred HHHHHHHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHHcCCCEEEEecCCC-Ch-------HHHHHHhcCC-----CC
Confidence 334445666788889998887765543322 22222 3699999876432 11 2345555556 77
Q ss_pred EEEEe
Q 023716 158 LYAHC 162 (278)
Q Consensus 158 VLGIC 162 (278)
+.-+=
T Consensus 81 vV~i~ 85 (270)
T cd06296 81 FVVVD 85 (270)
T ss_pred EEEEe
Confidence 76553
No 254
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=51.76 E-value=1.4e+02 Score=25.57 Aligned_cols=47 Identities=23% Similarity=0.227 Sum_probs=28.5
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCCC-hhh----HHHhc-ccCCEEEEcCCC
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNEP-EDV----LFEKL-ELVNGVLYTGGW 129 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~~-~~~----l~~~l-~~iDGlIl~GG~ 129 (278)
...+.....+.+++.|..+++...+.. .+. +..+. .++||+++.+..
T Consensus 14 ~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~ 66 (264)
T cd01574 14 PSSTLAAIESAAREAGYAVTLSMLAEADEEALRAAVRRLLAQRVDGVIVNAPL 66 (264)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEeCCCCchHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 344455677788888988877754322 111 22222 469999997653
No 255
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=51.76 E-value=97 Score=26.50 Aligned_cols=68 Identities=12% Similarity=0.085 Sum_probs=38.0
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHh----c-ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCc
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNEPEDVLFEK----L-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFP 157 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~----l-~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~P 157 (278)
..-+.....+.+++.|..++......+.+...+. + .++||+|+.+. . .. .....++.+.+++ +|
T Consensus 14 ~~~~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~~-~--~~---~~~~~l~~l~~~~-----ip 82 (268)
T cd06323 14 FVTLKDGAQKEAKELGYELTVLDAQNDAAKQLNDIEDLITRGVDAIIINPT-D--SD---AVVPAVKAANEAG-----IP 82 (268)
T ss_pred HHHHHHHHHHHHHHcCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEcCC-C--hH---HHHHHHHHHHHCC-----Cc
Confidence 3444455667788889888876554333322221 2 36999999642 1 11 1123445555556 77
Q ss_pred EEEE
Q 023716 158 LYAH 161 (278)
Q Consensus 158 VLGI 161 (278)
+..+
T Consensus 83 vv~~ 86 (268)
T cd06323 83 VFTI 86 (268)
T ss_pred EEEE
Confidence 7666
No 256
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=51.66 E-value=1.2e+02 Score=26.23 Aligned_cols=47 Identities=9% Similarity=-0.099 Sum_probs=29.9
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCCChh---hHHHhc--ccCCEEEEcCCC
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNEPED---VLFEKL--ELVNGVLYTGGW 129 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~~~~---~l~~~l--~~iDGlIl~GG~ 129 (278)
..-+.....+.+++.|..+++...+.+.+ .+...+ ..+||||+.+..
T Consensus 14 ~~~~~~~i~~~~~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~~ 65 (269)
T cd06297 14 YRRLLEGIEGALLEQRYDLALFPLLSLARLKRYLESTTLAYLTDGLLLASYD 65 (269)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecCc
Confidence 34445667778888999988876553322 122222 369999998753
No 257
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=51.29 E-value=1.2e+02 Score=27.09 Aligned_cols=63 Identities=16% Similarity=0.165 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhc-----ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEE
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKL-----ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l-----~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGI 161 (278)
....+..++.|..++......+.+...+.+ +++||||+.+... ......++.+.+.+ +||..+
T Consensus 18 ~~i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~~~~------~~~~~~l~~~~~~~-----iPvV~~ 85 (302)
T TIGR02634 18 DIFVAAAESLGAKVFVQSANGNEAKQISQIENLIARGVDVLVIIPQNG------QVLSNAVQEAKDEG-----IKVVAY 85 (302)
T ss_pred HHHHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh------hHHHHHHHHHHHCC-----CeEEEe
Confidence 456678888899888775543333222222 4699999975321 11234566666666 777655
No 258
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=51.14 E-value=1.3e+02 Score=25.96 Aligned_cols=70 Identities=9% Similarity=0.003 Sum_probs=42.3
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCC-ChhhHHHh----c-ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCC
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEK----L-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHF 156 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~-~~~~l~~~----l-~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~ 156 (278)
..-+.....+.+++.|..+++...+. +.+...+. + .++||+|+.+... . .....++.+.+++ +
T Consensus 15 ~~~~~~g~~~~~~~~g~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~---~---~~~~~l~~~~~~~-----i 83 (271)
T cd06312 15 WTVVKNGAEDAAKDLGVDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIPDP---D---ALDPAIKRAVAAG-----I 83 (271)
T ss_pred HHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCh---H---HhHHHHHHHHHCC-----C
Confidence 33345667778888999888776543 33322221 1 4699999986421 1 1223556666666 8
Q ss_pred cEEEEec
Q 023716 157 PLYAHCL 163 (278)
Q Consensus 157 PVLGICl 163 (278)
|+.-+.+
T Consensus 84 pvV~~~~ 90 (271)
T cd06312 84 PVISFNA 90 (271)
T ss_pred eEEEeCC
Confidence 8888754
No 259
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=50.87 E-value=1.3e+02 Score=26.45 Aligned_cols=68 Identities=9% Similarity=-0.017 Sum_probs=39.4
Q ss_pred hhhhHHHHHHHHHHcCCeEEEE-eCCCChhh----HHHhc-ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCC
Q 023716 83 ASYIAASYVKFVESAGARVIPL-IYNEPEDV----LFEKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHF 156 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i-~~~~~~~~----l~~~l-~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~ 156 (278)
...+.....+.+++.|..++.+ ....+.+. +...+ ..+||+|+.+... . ...+.++.+.+++ +
T Consensus 14 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~dgiii~~~~~---~---~~~~~i~~~~~~~-----i 82 (294)
T cd06316 14 SNAQVRGAKDEFAKLGIEVVATTDAQFDPAKQVADIETTISQKPDIIISIPVDP---V---STAAAYKKVAEAG-----I 82 (294)
T ss_pred HHHHHHHHHHHHHHcCCEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCc---h---hhhHHHHHHHHcC-----C
Confidence 4455666778888999988754 32223321 22222 4799999975321 1 1124556666667 7
Q ss_pred cEEEE
Q 023716 157 PLYAH 161 (278)
Q Consensus 157 PVLGI 161 (278)
|+..+
T Consensus 83 PvV~~ 87 (294)
T cd06316 83 KLVFM 87 (294)
T ss_pred cEEEe
Confidence 87654
No 260
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=50.53 E-value=1.9e+02 Score=26.05 Aligned_cols=63 Identities=17% Similarity=0.065 Sum_probs=37.8
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCCC
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~ 129 (278)
...+||++....+ ....+.+.....+.+++.|..++......+.+. +..+. ..+||||+.++.
T Consensus 58 ~~~~i~vi~~~~~--------~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~ 125 (341)
T PRK10703 58 HTKSIGLLATSSE--------APYFAEIIEAVEKNCYQKGYTLILCNAWNNLEKQRAYLSMLAQKRVDGLLVMCSE 125 (341)
T ss_pred CCCeEEEEeCCCC--------CchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCC
Confidence 3458998864321 122444556677788889998887754433322 22222 369999998753
No 261
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=50.35 E-value=1.6e+02 Score=25.09 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=29.2
Q ss_pred hhhHHHHHHHHHHcCCeEEEEeCCCCh---hhHHHhc--ccCCEEEEcCCC
Q 023716 84 SYIAASYVKFVESAGARVIPLIYNEPE---DVLFEKL--ELVNGVLYTGGW 129 (278)
Q Consensus 84 ~yi~~syv~~le~~Ga~~v~i~~~~~~---~~l~~~l--~~iDGlIl~GG~ 129 (278)
.-+.....+.+++.|..+.....+... +.+.+.+ ..+||+|+.+..
T Consensus 19 ~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~ 69 (268)
T cd06271 19 AEFLSGLSEALAEHGYDLVLLPVDPDEDPLEVYRRLVESGLVDGVIISRTR 69 (268)
T ss_pred HHHHHHHHHHHHHCCceEEEecCCCcHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 334456667788889888877654332 2234443 369999998753
No 262
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=50.33 E-value=70 Score=27.78 Aligned_cols=93 Identities=13% Similarity=0.193 Sum_probs=57.5
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCCh--hhHHHhcccCCEEEEcCCCCCCccc
Q 023716 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE--DVLFEKLELVNGVLYTGGWAKDGLY 135 (278)
Q Consensus 58 ~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~--~~l~~~l~~iDGlIl~GG~~~~p~~ 135 (278)
...|+|.|+..... .. ....++.+.+.|.+.+.|.++.+. +.+..+-+..+.+++-=|.-.++..
T Consensus 2 ~~~~vv~Vir~~~~-----------~~--a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~ 68 (201)
T PRK06015 2 KLQPVIPVLLIDDV-----------EH--AVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQ 68 (201)
T ss_pred CCCCEEEEEEcCCH-----------HH--HHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHH
Confidence 45688999865421 11 245778999999999999987542 3333333455666665565544433
Q ss_pred hHH--------------HHHHHHHHHHhcCCCCCCcEEEEechHHHH
Q 023716 136 YAI--------------VEKVFKKILEKNDAGDHFPLYAHCLGFELL 168 (278)
Q Consensus 136 ~~~--------------~~~li~~al~~~~~g~~~PVLGIClG~QlL 168 (278)
.+. ..++++++.+.+ +|++==|.=---+
T Consensus 69 a~~ai~aGA~FivSP~~~~~vi~~a~~~~-----i~~iPG~~TptEi 110 (201)
T PRK06015 69 FEDAAKAGSRFIVSPGTTQELLAAANDSD-----VPLLPGAATPSEV 110 (201)
T ss_pred HHHHHHcCCCEEECCCCCHHHHHHHHHcC-----CCEeCCCCCHHHH
Confidence 222 257888888888 8877544443333
No 263
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=50.28 E-value=56 Score=29.74 Aligned_cols=80 Identities=21% Similarity=0.245 Sum_probs=44.3
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHH-------HhcccCCEEEEcCCCCCCcc
Q 023716 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLF-------EKLELVNGVLYTGGWAKDGL 134 (278)
Q Consensus 62 vIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~-------~~l~~iDGlIl~GG~~~~p~ 134 (278)
.|||..++... ....++..+.+++...+-.+....-. .+.+. ..-+.+|.++.-||..
T Consensus 2 ~~~i~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~d~ivvlGGDG---- 66 (281)
T COG0061 2 KVGIVGRPDKP---------EALKIAKRLYEFLKFKGVTVEVDQEL--AEELKDFADYVDDDEEKADLIVVLGGDG---- 66 (281)
T ss_pred eEEEEecCCcH---------HHHHHHHHHHHHHHhcCceEEEechh--hhhcccccccccccccCceEEEEeCCcH----
Confidence 57888877532 13444566778888877766654311 11111 0113466666666654
Q ss_pred chHHHHHHHHHHHHhcCCCCCCcEEEEech
Q 023716 135 YYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (278)
Q Consensus 135 ~~~~~~~li~~al~~~~~g~~~PVLGIClG 164 (278)
+.-...+.....+ +||+||-+|
T Consensus 67 ---tlL~~~~~~~~~~-----~pilgin~G 88 (281)
T COG0061 67 ---TLLRAARLLARLD-----IPVLGINLG 88 (281)
T ss_pred ---HHHHHHHHhccCC-----CCEEEEeCC
Confidence 2223333333334 999999999
No 264
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.14 E-value=55 Score=29.38 Aligned_cols=59 Identities=15% Similarity=0.007 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechH
Q 023716 86 IAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (278)
Q Consensus 86 i~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~ 165 (278)
+.....+++.+.|..+..-.. .+ .....+|.++.-||.. + +++.+...+ +||+||-.|.
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~---~~---~~~~~~d~vi~iGGDG-------T---~L~a~~~~~-----~Pilgin~G~ 72 (256)
T PRK14075 14 EAKFLKEKISKEHEVVEFCEA---SA---SGKVTADLIIVVGGDG-------T---VLKAAKKVG-----TPLVGFKAGR 72 (256)
T ss_pred HHHHHHHHHHHcCCeeEeecc---cc---cccCCCCEEEEECCcH-------H---HHHHHHHcC-----CCEEEEeCCC
Confidence 345677888888887664321 11 2245789999999965 2 222222225 9999999885
No 265
>PRK03094 hypothetical protein; Provisional
Probab=50.14 E-value=33 Score=25.37 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=26.3
Q ss_pred HHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCC
Q 023716 89 SYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGW 129 (278)
Q Consensus 89 syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~ 129 (278)
...++|++.|..++.+.... ..+.+|+++++|-.
T Consensus 12 ~i~~~L~~~GYeVv~l~~~~-------~~~~~Da~VitG~d 45 (80)
T PRK03094 12 DVQQALKQKGYEVVQLRSEQ-------DAQGCDCCVVTGQD 45 (80)
T ss_pred HHHHHHHHCCCEEEecCccc-------ccCCcCEEEEeCCC
Confidence 46689999999999985321 15689999999954
No 266
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=49.97 E-value=37 Score=31.85 Aligned_cols=49 Identities=12% Similarity=0.149 Sum_probs=32.6
Q ss_pred ccCCEEEEcCCCCCC-ccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 118 ELVNGVLYTGGWAKD-GLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 118 ~~iDGlIl~GG~~~~-p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
..+|-++..||.... ..-......+++.+..+. .++-|||-|.-+|+.+
T Consensus 75 ~~~~~v~v~~g~~~~~~~~~~~l~~~Lr~~~~~G-----~~l~gictGaf~LA~a 124 (328)
T COG4977 75 PPIDILPVCGGLGPERPVNAPALLAWLRRAARRG-----ARLGGLCTGAFVLAEA 124 (328)
T ss_pred CcceEEEEecCCCcccccchHHHHHHHHHHHhcC-----CeEEEehHhHHHHHHh
Confidence 347777776765432 121123345666666666 9999999999999886
No 267
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=49.54 E-value=1.5e+02 Score=26.55 Aligned_cols=61 Identities=18% Similarity=0.205 Sum_probs=36.5
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCC
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGG 128 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG 128 (278)
...||++..... + ....-+.....+.+++.|..+++...+.+.+. +..+. ..+||+|+.+.
T Consensus 60 ~~~Igvi~~~~~-------~-~~~~~~~~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 125 (327)
T TIGR02417 60 SRTIGLVIPDLE-------N-YSYARIAKELEQQCREAGYQLLIACSDDNPDQEKVVIENLLARQVDALIVASC 125 (327)
T ss_pred CceEEEEeCCCC-------C-ccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 358999863211 1 12333455666778889999887765543322 22222 47999998764
No 268
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=49.46 E-value=1.4e+02 Score=30.31 Aligned_cols=71 Identities=21% Similarity=0.279 Sum_probs=44.2
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCC-----------------ChhhHHH----
Q 023716 57 LNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE-----------------PEDVLFE---- 115 (278)
Q Consensus 57 ~~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~-----------------~~~~l~~---- 115 (278)
...||+|||.+...+.-.+. ..-.-++....+.++++|+.++..+... ++|.+.+
T Consensus 39 ~~~kP~IgI~~s~~d~~p~h----~hl~~l~~~vk~~i~~aGg~p~ef~t~~v~DGiamG~~GM~~SL~SRelIAds~e~ 114 (575)
T COG0129 39 DFGKPIIGIANSYNDMVPGH----QHLKDLAQLVKEGIREAGGVPVEFGTIAVCDGIAMGHDGMPYSLPSRELIADSVEE 114 (575)
T ss_pred HcCCCeEEEEeccccCcCch----hhHHHHHHHHHHHHHHcCCceeEeCCCCccCccccCCCCcccccccHHHHHHHHHH
Confidence 45899999999886543321 1222234556678889999888775433 1222222
Q ss_pred hc--ccCCEEEEcCCCCC
Q 023716 116 KL--ELVNGVLYTGGWAK 131 (278)
Q Consensus 116 ~l--~~iDGlIl~GG~~~ 131 (278)
.+ ..+||+|+.||-|+
T Consensus 115 ~~~~~~~Da~V~i~~CDK 132 (575)
T COG0129 115 VLSAHPFDGVVLIGGCDK 132 (575)
T ss_pred HHhccCcceEEEecCCCC
Confidence 22 24899999988874
No 269
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=48.96 E-value=1.4e+02 Score=25.84 Aligned_cols=68 Identities=10% Similarity=0.041 Sum_probs=38.4
Q ss_pred hhhHHHHHHHHHHcCCeEEEEeCCC--Chhh----HHHhc-ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCC
Q 023716 84 SYIAASYVKFVESAGARVIPLIYNE--PEDV----LFEKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHF 156 (278)
Q Consensus 84 ~yi~~syv~~le~~Ga~~v~i~~~~--~~~~----l~~~l-~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~ 156 (278)
.-+....-+++++.|..+++...+. +.+. ++.++ .++||+|+.+... + .....++.+.+++ +
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~--~----~~~~~~~~~~~~~-----i 83 (275)
T cd06320 15 RSLKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPISD--V----NLVPAVERAKKKG-----I 83 (275)
T ss_pred HHHHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCCCh--H----HhHHHHHHHHHCC-----C
Confidence 3344556678888999888764322 2211 22222 4799999865432 1 1122445555666 8
Q ss_pred cEEEEe
Q 023716 157 PLYAHC 162 (278)
Q Consensus 157 PVLGIC 162 (278)
|+..+-
T Consensus 84 PvV~~~ 89 (275)
T cd06320 84 PVVNVN 89 (275)
T ss_pred eEEEEC
Confidence 887663
No 270
>PRK06852 aldolase; Validated
Probab=48.71 E-value=1.4e+02 Score=27.72 Aligned_cols=68 Identities=18% Similarity=0.260 Sum_probs=42.4
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCC-----CChhhHHHhcccC--CEEEEcCCCCC
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN-----EPEDVLFEKLELV--NGVLYTGGWAK 131 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~-----~~~~~l~~~l~~i--DGlIl~GG~~~ 131 (278)
.-|+|+.. .|.... ..+....++|+ -.++.-...||.++-++|. .+.+.+.+..+.+ =.||+.||+-.
T Consensus 167 GlPll~~~-yprG~~---i~~~~~~~~ia-~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~g~vpVviaGG~k~ 241 (304)
T PRK06852 167 GLIAVLWI-YPRGKA---VKDEKDPHLIA-GAAGVAACLGADFVKVNYPKKEGANPAELFKEAVLAAGRTKVVCAGGSST 241 (304)
T ss_pred CCcEEEEe-eccCcc---cCCCccHHHHH-HHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhCCCCcEEEeCCCCC
Confidence 35888743 332111 11222334553 3446667799999999997 5566777766655 45899999875
No 271
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=48.43 E-value=92 Score=26.51 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=29.6
Q ss_pred chhhhHHHHHHHHHH-cCCeEEEEeCCCC-hhhH----------------HHhcccCCEEEEc
Q 023716 82 NASYIAASYVKFVES-AGARVIPLIYNEP-EDVL----------------FEKLELVNGVLYT 126 (278)
Q Consensus 82 ~~~yi~~syv~~le~-~Ga~~v~i~~~~~-~~~l----------------~~~l~~iDGlIl~ 126 (278)
...-++..+.+.+++ .|+.+.++...+. ++++ .+.+..+|+|||-
T Consensus 14 ~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~g 76 (200)
T PRK03767 14 HIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDELADYDAIIFG 76 (200)
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHHHhCCEEEEE
Confidence 355667778888887 8998877765321 1111 3456789998885
No 272
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=48.42 E-value=1.1e+02 Score=26.74 Aligned_cols=40 Identities=15% Similarity=0.141 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCCeEEE-EeCCCChhhHHHhcccCCEEEEcC
Q 023716 88 ASYVKFVESAGARVIP-LIYNEPEDVLFEKLELVNGVLYTG 127 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~-i~~~~~~~~l~~~l~~iDGlIl~G 127 (278)
...++++++.|.++-+ +....+.+.+..+++.+|.|++.+
T Consensus 96 ~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMt 136 (220)
T PRK08883 96 DRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMS 136 (220)
T ss_pred HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEE
Confidence 4577899999988754 444456788888999999999954
No 273
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=48.28 E-value=1.2e+02 Score=26.17 Aligned_cols=67 Identities=7% Similarity=0.002 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHc-CCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEE
Q 023716 86 IAASYVKFVESA-GARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (278)
Q Consensus 86 i~~syv~~le~~-Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVL 159 (278)
+.....+.+++. |..+++.....+.+. +...+ .++||||+.+... . ...+.++.+.+++ +|+.
T Consensus 17 ~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~---~---~~~~~~~~~~~~~-----ipvV 85 (270)
T cd06308 17 MNDEIQREASNYPDVELIIADAADDNSKQVADIENFIRQGVDLLIISPNEA---A---PLTPVVEEAYRAG-----IPVI 85 (270)
T ss_pred HHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCCCEEEEecCch---h---hchHHHHHHHHCC-----CCEE
Confidence 344555667765 777776654333322 22222 3799999986432 1 1123445555566 7877
Q ss_pred EEec
Q 023716 160 AHCL 163 (278)
Q Consensus 160 GICl 163 (278)
-+..
T Consensus 86 ~~~~ 89 (270)
T cd06308 86 LLDR 89 (270)
T ss_pred EeCC
Confidence 6643
No 274
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=48.14 E-value=1.1e+02 Score=26.01 Aligned_cols=26 Identities=15% Similarity=0.349 Sum_probs=18.3
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCC
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNE 108 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~ 108 (278)
+..+..+..++|++.+-.+.++....
T Consensus 4 D~~i~~~~~~~l~~~~~~~~~~~~~~ 29 (286)
T PF04230_consen 4 DDLILEALLKLLKKHGPDAEIIIFSP 29 (286)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCC
Confidence 56778889999999885555444443
No 275
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=48.10 E-value=28 Score=28.60 Aligned_cols=36 Identities=25% Similarity=0.387 Sum_probs=23.0
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEE
Q 023716 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVI 102 (278)
Q Consensus 58 ~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v 102 (278)
-.+|||||.|....... ..- ...-.++|+.+|++-+
T Consensus 88 f~~pvIGVITK~Dl~~~--------~~~-i~~a~~~L~~aG~~~i 123 (143)
T PF10662_consen 88 FNKPVIGVITKIDLPSD--------DAN-IERAKKWLKNAGVKEI 123 (143)
T ss_pred cCCCEEEEEECccCccc--------hhh-HHHHHHHHHHcCCCCe
Confidence 46899999998743211 111 1234579999999754
No 276
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=48.02 E-value=1.1e+02 Score=25.67 Aligned_cols=63 Identities=14% Similarity=0.005 Sum_probs=41.6
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHH---Hhc--ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEe
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLF---EKL--ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~---~~l--~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIC 162 (278)
..+.+++...|.+|+...-+.+.+-.- +++ ..+|+++|..|.. ....+++++.+++ +-|.|+.
T Consensus 69 ~~l~~~l~~~Gf~pv~~kG~~Dv~laIDame~~~~~~iD~~vLvSgD~-------DF~~Lv~~lre~G-----~~V~v~g 136 (160)
T TIGR00288 69 DKLIEAVVNQGFEPIIVAGDVDVRMAVEAMELIYNPNIDAVALVTRDA-------DFLPVINKAKENG-----KETIVIG 136 (160)
T ss_pred HHHHHHHHHCCceEEEecCcccHHHHHHHHHHhccCCCCEEEEEeccH-------hHHHHHHHHHHCC-----CEEEEEe
Confidence 457789999999988654433332222 233 6789988877654 2245777777777 7787765
No 277
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=47.81 E-value=1.1e+02 Score=29.51 Aligned_cols=101 Identities=15% Similarity=0.227 Sum_probs=65.6
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCCh-hhHHHhc--ccCCEEE-E--------
Q 023716 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE-DVLFEKL--ELVNGVL-Y-------- 125 (278)
Q Consensus 58 ~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~-~~l~~~l--~~iDGlI-l-------- 125 (278)
..||+|||++.--. ..++ ....+.||+.|..++++.-+-.- ..++++. ..+|||| |
T Consensus 183 ~~kp~I~iTmfGvT-----------Tp~V-~~~~~~Le~~G~Ev~VFHAtG~GG~aME~Li~~G~~~~VlDlTttEl~d~ 250 (403)
T PF06792_consen 183 EDKPLIGITMFGVT-----------TPCV-DAIRERLEEEGYEVLVFHATGTGGRAMERLIREGQFDGVLDLTTTELADE 250 (403)
T ss_pred CCCcEEEEECCCCc-----------HHHH-HHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHcCCcEEEEECcHHHHHHH
Confidence 78999999986321 2333 34678899999999999877543 2233333 3578877 2
Q ss_pred -cCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCccccccccc
Q 023716 126 -TGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFN 183 (278)
Q Consensus 126 -~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~~~il~~~~ 183 (278)
.||-.. ...+-++.|.+++ +|-...|=++-++| ||....+.+.|.
T Consensus 251 l~GGv~s------agp~Rl~AA~~~G-----IP~Vvs~GalDmVn--Fg~~~tvPe~~~ 296 (403)
T PF06792_consen 251 LFGGVLS------AGPDRLEAAARAG-----IPQVVSPGALDMVN--FGPPDTVPEKFK 296 (403)
T ss_pred HhCCCCC------CCchHHHHHHHcC-----CCEEEecCccceec--cCCcccCCHhhc
Confidence 233211 1124566778888 99999999988877 566544555443
No 278
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=47.50 E-value=97 Score=27.47 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=30.3
Q ss_pred HHHHHHHHHcCCeE-EEEeCCCChhhHHHhcccCCEEEEcC
Q 023716 88 ASYVKFVESAGARV-IPLIYNEPEDVLFEKLELVNGVLYTG 127 (278)
Q Consensus 88 ~syv~~le~~Ga~~-v~i~~~~~~~~l~~~l~~iDGlIl~G 127 (278)
...++.++++|.++ +.+....+.+.+..+++.+|.|++..
T Consensus 98 ~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMs 138 (229)
T PRK09722 98 FRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMT 138 (229)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEE
Confidence 34678889999887 44444556788888999999999843
No 279
>PRK09054 phosphogluconate dehydratase; Validated
Probab=47.27 E-value=1.4e+02 Score=30.45 Aligned_cols=70 Identities=26% Similarity=0.183 Sum_probs=41.8
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEE-eCCC-----------------ChhhHHH----
Q 023716 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPL-IYNE-----------------PEDVLFE---- 115 (278)
Q Consensus 58 ~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i-~~~~-----------------~~~~l~~---- 115 (278)
..||.|||.+...+.-.+ .....-++....+.++.+|+.+... ..-. +.|.+..
T Consensus 63 ~~kP~IgIvns~nd~~p~----h~~l~~~~~~vk~~v~~aGg~~~~~Gg~pa~cDGit~G~~GM~~SL~SRdlIA~sie~ 138 (603)
T PRK09054 63 MTRPNIGIVTAYNDMLSA----HQPYEHYPDIIKEAAREAGAVAQVAGGVPAMCDGVTQGQPGMELSLFSRDVIAMSTAV 138 (603)
T ss_pred cCCCEEEEEeccccCcCc----cccHHHHHHHHHHHHHHcCCccceeCCCCccCCCccCCCcchhhhhhhHHHHHHHHHH
Confidence 579999999988664332 1222233444556778899887766 1111 1222221
Q ss_pred hc--ccCCEEEEcCCCCC
Q 023716 116 KL--ELVNGVLYTGGWAK 131 (278)
Q Consensus 116 ~l--~~iDGlIl~GG~~~ 131 (278)
.+ ..+||+|+-||-|+
T Consensus 139 ~l~~~~fDg~v~lg~CDK 156 (603)
T PRK09054 139 ALSHNMFDAALLLGVCDK 156 (603)
T ss_pred HhhcCCcceEEEeccCCC
Confidence 12 35899999998884
No 280
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=47.26 E-value=2e+02 Score=25.22 Aligned_cols=67 Identities=12% Similarity=0.039 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHcCCeEEEEeCCCChhhHHHhc-----ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEE
Q 023716 86 IAASYVKFVESAGARVIPLIYNEPEDVLFEKL-----ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYA 160 (278)
Q Consensus 86 i~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l-----~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLG 160 (278)
+.....+.+++.|..++......+.+...+.+ .++||+|+.+... . .....++.+.+.+ +|+.-
T Consensus 18 ~~~gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~~~~---~---~~~~~~~~~~~~~-----iPvV~ 86 (280)
T cd06315 18 VGEGVREAAKAIGWNLRILDGRGSEAGQAAALNQAIALKPDGIVLGGVDA---A---ELQAELELAQKAG-----IPVVG 86 (280)
T ss_pred HHHHHHHHHHHcCcEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcCCCH---H---HHHHHHHHHHHCC-----CCEEE
Confidence 44556678888998887765433333222222 5799999986421 1 1112334444455 78766
Q ss_pred Eec
Q 023716 161 HCL 163 (278)
Q Consensus 161 ICl 163 (278)
+.+
T Consensus 87 ~d~ 89 (280)
T cd06315 87 WHA 89 (280)
T ss_pred ecC
Confidence 644
No 281
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=47.16 E-value=1.8e+02 Score=25.03 Aligned_cols=68 Identities=10% Similarity=0.123 Sum_probs=38.0
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCc
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFP 157 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~P 157 (278)
...+.....+.+++.|..++......+++. +...+ .++||+|+.+... + .....++.+.+.+ +|
T Consensus 14 ~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~--~----~~~~~l~~~~~~~-----ip 82 (277)
T cd06319 14 WQIMGRGVKSKAKALGYDAVELSAENSAKKELENLRTAIDKGVSGIIISPTNS--S----AAVTLLKLAAQAK-----IP 82 (277)
T ss_pred HHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCch--h----hhHHHHHHHHHCC-----CC
Confidence 344455566777888988887754433321 22222 5799999865321 1 1123455555555 67
Q ss_pred EEEE
Q 023716 158 LYAH 161 (278)
Q Consensus 158 VLGI 161 (278)
+..+
T Consensus 83 vV~~ 86 (277)
T cd06319 83 VVIA 86 (277)
T ss_pred EEEE
Confidence 6543
No 282
>PF00920 ILVD_EDD: Dehydratase family; InterPro: IPR000581 Two dehydratases, dihydroxy-acid dehydratase (4.2.1.9 from EC) (gene ilvD or ILV3) and 6-phosphogluconate dehydratase (4.2.1.12 from EC) (gene edd) have been shown to be evolutionary related []. Dihydroxy-acid dehydratase catalyses the fourth step in the biosynthesis of isoleucine and valine, the dehydratation of 2,3-dihydroxy-isovaleic acid into alpha-ketoisovaleric acid. 6-Phosphogluconate dehydratase catalyses the first step in the Entner-Doudoroff pathway, the dehydratation of 6-phospho-D-gluconate into 6-phospho-2-dehydro-3-deoxy-D-gluconate. Another protein containing this signature is the Escherichia coli hypothetical protein yjhG. The N-terminal part of the proteins contains a cysteine that could be involved in the binding of a 2Fe-2S iron-sulphur cluster [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GP4_B.
Probab=47.08 E-value=15 Score=36.57 Aligned_cols=99 Identities=17% Similarity=0.147 Sum_probs=24.8
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCC-----------------ChhhH----HHhc-
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE-----------------PEDVL----FEKL- 117 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~-----------------~~~~l----~~~l- 117 (278)
||+|||.+...+...+. ..-.-++....+-++++|+.|+.++... ++|.+ +..+
T Consensus 1 KP~IgI~ns~~e~~Pc~----~hl~~la~~vk~gi~~aGG~p~ef~ti~v~Dgi~~g~~GM~ysL~sRelIAd~iE~~~~ 76 (521)
T PF00920_consen 1 KPIIGIVNSWSEINPCH----MHLRELAEAVKEGIRAAGGVPFEFNTIAVCDGIAMGTEGMRYSLPSRELIADSIEEMVR 76 (521)
T ss_dssp ----------------------------------SS---EEEE---B---------SSSGGGGHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEeccccCCccc----hhHHHHHHHHHHHHHHcCCeEEEECCCcccchhcCCccccchhhhhHHHHHHHHHHHHh
Confidence 79999998876543321 1222234445567778999998775433 11111 2222
Q ss_pred -ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHh
Q 023716 118 -ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIIS 173 (278)
Q Consensus 118 -~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~G 173 (278)
..+||+|+.||-|+... ..+-.+...| +|-+=+.-|-++=...-|
T Consensus 77 a~~~Dg~V~l~gCDK~~P------g~lMaaarln-----iPsi~v~gGpm~~G~~~G 122 (521)
T PF00920_consen 77 AHPFDGMVLLGGCDKIVP------GMLMAAARLN-----IPSIFVYGGPMLPGKYRG 122 (521)
T ss_dssp T---SEEEEE--STTCCH------HHHHHHHTTT-----S-EEE-------------
T ss_pred CCCcceEEEeccCCCccH------HHHHHHHHcC-----CCEEEEecCCCCCCcccc
Confidence 35899999999985322 2344455567 999888877776555433
No 283
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=46.92 E-value=82 Score=24.18 Aligned_cols=73 Identities=12% Similarity=-0.013 Sum_probs=39.8
Q ss_pred hhhhHHHHH-HHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEE
Q 023716 83 ASYIAASYV-KFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (278)
Q Consensus 83 ~~yi~~syv-~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGI 161 (278)
.++..+.|. ..+.+.|-.+..+............+..=|-+|+..-.. ...+..+.++.+.+++ .|+++|
T Consensus 10 ~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG----~t~~~~~~~~~a~~~g-----~~vi~i 80 (128)
T cd05014 10 KSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSG----ETDELLNLLPHLKRRG-----APIIAI 80 (128)
T ss_pred HhHHHHHHHHHHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCC----CCHHHHHHHHHHHHCC-----CeEEEE
Confidence 444445554 455667877766532111110112233446666654333 2234456788888887 999999
Q ss_pred ech
Q 023716 162 CLG 164 (278)
Q Consensus 162 ClG 164 (278)
+-.
T Consensus 81 T~~ 83 (128)
T cd05014 81 TGN 83 (128)
T ss_pred eCC
Confidence 953
No 284
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=46.78 E-value=1.7e+02 Score=25.44 Aligned_cols=66 Identities=11% Similarity=-0.043 Sum_probs=37.8
Q ss_pred hhhHHHHHHHHHHcCCeEEEEeCCC--Chh----hHHHhc-ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCC
Q 023716 84 SYIAASYVKFVESAGARVIPLIYNE--PED----VLFEKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHF 156 (278)
Q Consensus 84 ~yi~~syv~~le~~Ga~~v~i~~~~--~~~----~l~~~l-~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~ 156 (278)
.-+.....+.++..|..++....+. +.+ .+..++ ..+||||+.+... . ... .++.+.+++ +
T Consensus 15 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiI~~~~~~---~---~~~-~~~~~~~~g-----i 82 (268)
T cd06306 15 LSVNYGMVEEAKRLGVSLKLLEAGGYPNLAKQIAQLEDCAAWGADAILLGAVSP---D---GLN-EILQQVAAS-----I 82 (268)
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCh---h---hHH-HHHHHHHCC-----C
Confidence 3344566678888999988875432 221 222222 4799999985421 1 111 344455566 7
Q ss_pred cEEEE
Q 023716 157 PLYAH 161 (278)
Q Consensus 157 PVLGI 161 (278)
||.-+
T Consensus 83 PvV~~ 87 (268)
T cd06306 83 PVIAL 87 (268)
T ss_pred CEEEe
Confidence 87644
No 285
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=46.77 E-value=1.3e+02 Score=23.32 Aligned_cols=43 Identities=26% Similarity=0.203 Sum_probs=29.5
Q ss_pred chhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcC
Q 023716 82 NASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTG 127 (278)
Q Consensus 82 ~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~G 127 (278)
+...++....+.+...|..+.++..+... . ..+...|+|+|..
T Consensus 11 nT~~~A~~i~~~~~~~g~~v~~~~~~~~~--~-~~l~~~d~iilgs 53 (140)
T TIGR01753 11 NTEEMANIIAEGLKEAGAEVDLLEVADAD--A-EDLLSYDAVLLGC 53 (140)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEcccCC--H-HHHhcCCEEEEEc
Confidence 45667777788888889988887765432 1 1345689988754
No 286
>PRK09739 hypothetical protein; Provisional
Probab=46.57 E-value=1.2e+02 Score=25.63 Aligned_cols=74 Identities=12% Similarity=0.192 Sum_probs=44.8
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCC------------------------ChhhHHHh
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE------------------------PEDVLFEK 116 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~------------------------~~~~l~~~ 116 (278)
.++-|.++|... ....-+...+++.+++.|..+..+.... +.+.+.+.
T Consensus 5 kiliI~~sp~~~--------s~s~~l~~~~~~~~~~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (199)
T PRK09739 5 RIYLVWAHPRHD--------SLTAKVAEAIHQRAQERGHQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSE 76 (199)
T ss_pred eEEEEEcCCCCC--------CcHHHHHHHHHHHHHHCCCEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHH
Confidence 477788887532 2345567778888888898777663221 01234456
Q ss_pred cccCCEEEEcCCCCCCccchHHH----HHHHHHHH
Q 023716 117 LELVNGVLYTGGWAKDGLYYAIV----EKVFKKIL 147 (278)
Q Consensus 117 l~~iDGlIl~GG~~~~p~~~~~~----~~li~~al 147 (278)
+..+|+|||. .|.|+... +.+++.+.
T Consensus 77 l~~AD~iV~~-----~P~y~~~~Pa~LK~~iD~v~ 106 (199)
T PRK09739 77 LLEHDALVFV-----FPLWWYSFPAMLKGYIDRVW 106 (199)
T ss_pred HHhCCEEEEE-----CchhhhcchHHHHHHHHHHc
Confidence 6778999885 45555433 44444443
No 287
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=46.13 E-value=1.4e+02 Score=25.62 Aligned_cols=46 Identities=22% Similarity=0.250 Sum_probs=29.5
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCCChhh---HHHhc--ccCCEEEEcCC
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNEPEDV---LFEKL--ELVNGVLYTGG 128 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~~~~~---l~~~l--~~iDGlIl~GG 128 (278)
..-+.....+.+++.|..++....+.+.+. +.+.+ .++||||+.+.
T Consensus 17 ~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 67 (268)
T cd06277 17 YSEIYRAIEEEAKKYGYNLILKFVSDEDEEEFELPSFLEDGKVDGIILLGG 67 (268)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeCC
Confidence 444456677788889998888766544321 12222 47999999764
No 288
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=46.12 E-value=1e+02 Score=31.83 Aligned_cols=78 Identities=18% Similarity=0.168 Sum_probs=42.5
Q ss_pred CCCCCCCcEEEEeCCCCCC-CCC--CCCCCCchhhhHHHHHHHHHHcCCeEEEEeC-CCChhhHHH----hcc-cCCEEE
Q 023716 54 DSKLNYRPVIGIVTHPGDG-ASG--RLNNATNASYIAASYVKFVESAGARVIPLIY-NEPEDVLFE----KLE-LVNGVL 124 (278)
Q Consensus 54 ~~~~~~rPvIGIl~~~~~~-~~~--~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~-~~~~~~l~~----~l~-~iDGlI 124 (278)
.-.+..||.|+|++.-..- ..+ .+..+.-..........++++.|+.++.+.. .++.+.+.+ .++ .+|-||
T Consensus 175 ~V~V~~kprV~visTGdELv~~g~~~~~~g~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DlvI 254 (659)
T PLN02699 175 MVKVYPRPTVAILSTGDELVEPTTGTLGRGQIRDSNRAMLLAAAIQQQCKVVDLGIARDDEEELERILDEAISSGVDILL 254 (659)
T ss_pred eEEeecCCeEEEEeCCcccccCCCCCCCCCcEEeChHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhcCCCCEEE
Confidence 3345678999997543211 001 0111111122122345678999998876532 234444444 333 589999
Q ss_pred EcCCCCC
Q 023716 125 YTGGWAK 131 (278)
Q Consensus 125 l~GG~~~ 131 (278)
++||-..
T Consensus 255 tTGGts~ 261 (659)
T PLN02699 255 TSGGVSM 261 (659)
T ss_pred ECCCCCC
Confidence 9999775
No 289
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=45.46 E-value=1.4e+02 Score=24.57 Aligned_cols=57 Identities=14% Similarity=0.205 Sum_probs=34.4
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCC--------------ChhhHHHhcccCCEEEEc
Q 023716 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE--------------PEDVLFEKLELVNGVLYT 126 (278)
Q Consensus 62 vIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~--------------~~~~l~~~l~~iDGlIl~ 126 (278)
+++|.++|..+ ....-+....++.++..|..+..+.... ..+.+.+.+..+|+|||.
T Consensus 2 il~I~gS~r~~--------S~t~~l~~~~~~~l~~~~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~ 72 (171)
T TIGR03567 2 VLTLSGSPSTP--------SRSSALLRHVREALQEQGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVA 72 (171)
T ss_pred EEEEECCCCCC--------ChHHHHHHHHHHHHHHCCCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEE
Confidence 67788877532 1234455667778888888766663221 012334456678999986
No 290
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=45.15 E-value=1.5e+02 Score=26.43 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=37.0
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhc-----ccCCEEEEcCC
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKL-----ELVNGVLYTGG 128 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l-----~~iDGlIl~GG 128 (278)
.+|||+-..... ...+-+.....+.+++.|..++++..+.+.+.- +.+ .++||+|+.+-
T Consensus 2 ~~IGvivp~~~n--------pff~~ii~gIe~~a~~~Gy~l~l~~t~~~~~~e-~~i~~l~~~~vDGiI~~s~ 65 (279)
T PF00532_consen 2 KTIGVIVPDISN--------PFFAEIIRGIEQEAREHGYQLLLCNTGDDEEKE-EYIELLLQRRVDGIILASS 65 (279)
T ss_dssp CEEEEEESSSTS--------HHHHHHHHHHHHHHHHTTCEEEEEEETTTHHHH-HHHHHHHHTTSSEEEEESS
T ss_pred CEEEEEECCCCC--------cHHHHHHHHHHHHHHHcCCEEEEecCCCchHHH-HHHHHHHhcCCCEEEEecc
Confidence 468887654321 123334555667778899999888766554322 322 47999999954
No 291
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=45.03 E-value=1.8e+02 Score=24.94 Aligned_cols=44 Identities=11% Similarity=0.097 Sum_probs=27.9
Q ss_pred hhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhc--ccCCEEEEcCC
Q 023716 84 SYIAASYVKFVESAGARVIPLIYNEPEDVLFEKL--ELVNGVLYTGG 128 (278)
Q Consensus 84 ~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l--~~iDGlIl~GG 128 (278)
.-+...+.+.+++.|..+++.... +.+...+.+ .++||+|+.+.
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~-~~~~~~~~l~~~~vdgii~~~~ 60 (261)
T cd06272 15 TELVTGINQAISKNGYNMNVSITP-SLAEAEDLFKENRFDGVIIFGE 60 (261)
T ss_pred HHHHHHHHHHHHHcCCEEEEEecc-cHHHHHHHHHHcCcCEEEEeCC
Confidence 334456677788889888777544 232233333 37999998864
No 292
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=44.76 E-value=1.4e+02 Score=24.68 Aligned_cols=57 Identities=11% Similarity=0.184 Sum_probs=33.1
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHH-HcCCeEEEEeCCC--------------C--hhhHHHhcccCCEEE
Q 023716 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVE-SAGARVIPLIYNE--------------P--EDVLFEKLELVNGVL 124 (278)
Q Consensus 62 vIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le-~~Ga~~v~i~~~~--------------~--~~~l~~~l~~iDGlI 124 (278)
+++|.+.+..+ ....-+...+.+.++ +.|..+..+.... + .+.+.+.+..+||+|
T Consensus 2 Il~i~GS~r~~--------s~t~~l~~~~~~~l~~~~g~ev~~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iI 73 (174)
T TIGR03566 2 VVGVSGSLTRP--------SRTLALVEALVAELAARLGISPRTIDLADLAPSLGGALWRSQLPPDAERILQAIESADLLV 73 (174)
T ss_pred EEEEECCCCCC--------ChHHHHHHHHHHHHHHhcCCeEEEEEhhhcChhhccccccCCCCHHHHHHHHHHHHCCEEE
Confidence 67777777532 123445566666665 5677766553211 1 123455677899999
Q ss_pred Ec
Q 023716 125 YT 126 (278)
Q Consensus 125 l~ 126 (278)
|.
T Consensus 74 i~ 75 (174)
T TIGR03566 74 VG 75 (174)
T ss_pred EE
Confidence 85
No 293
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=44.69 E-value=2e+02 Score=24.66 Aligned_cols=46 Identities=11% Similarity=0.183 Sum_probs=29.4
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhc-----ccCCEEEEcCC
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKL-----ELVNGVLYTGG 128 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l-----~~iDGlIl~GG 128 (278)
...+.....+.+++.|..+.+...+.+.+...+.+ ..+||+|+.+-
T Consensus 14 ~~~~~~gi~~~~~~~gy~v~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (269)
T cd06293 14 FAELADAVEEEADARGLSLVLCATRNRPERELTYLRWLDTNHVDGLIFVTN 64 (269)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 34455667788889999988775443332222212 46999999864
No 294
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=44.44 E-value=1.3e+02 Score=26.47 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCCeE-EEEeCCCChhhHHHhcccCCEEEEc
Q 023716 88 ASYVKFVESAGARV-IPLIYNEPEDVLFEKLELVNGVLYT 126 (278)
Q Consensus 88 ~syv~~le~~Ga~~-v~i~~~~~~~~l~~~l~~iDGlIl~ 126 (278)
...++++++.|.++ +.+.+..+.+.+..+++.+|.|++.
T Consensus 100 ~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvM 139 (223)
T PRK08745 100 HRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVM 139 (223)
T ss_pred HHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEE
Confidence 45778899999887 4454555678888899999999983
No 295
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=44.13 E-value=2.1e+02 Score=24.56 Aligned_cols=43 Identities=9% Similarity=0.052 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHcCCeEEEEeCCCChhhHHHh-----cccCCEEEEcCC
Q 023716 86 IAASYVKFVESAGARVIPLIYNEPEDVLFEK-----LELVNGVLYTGG 128 (278)
Q Consensus 86 i~~syv~~le~~Ga~~v~i~~~~~~~~l~~~-----l~~iDGlIl~GG 128 (278)
+.....+.+++.|..++....+.+.+...+. -..+||+|+.+-
T Consensus 17 ~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (265)
T cd06285 17 MYEGIEEAAAERGYSTFVANTGDNPDAQRRAIEMLLDRRVDGLILGDA 64 (265)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 3456677888899988766554443322221 247999999753
No 296
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=44.08 E-value=2.3e+02 Score=25.26 Aligned_cols=61 Identities=16% Similarity=0.236 Sum_probs=35.9
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHH----Hhc-ccCCEEEEcCC
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLF----EKL-ELVNGVLYTGG 128 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~----~~l-~~iDGlIl~GG 128 (278)
.-+|||+..... + .....+.....+.+++.|..+++...+.+.+... .+. ..+||+|+.+.
T Consensus 59 ~~~Igvv~~~~~-------~-~f~~~l~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 124 (329)
T TIGR01481 59 TTTVGVIIPDIS-------N-IYYAELARGIEDIATMYKYNIILSNSDEDPEKEVQVLNTLLSKQVDGIIFMGG 124 (329)
T ss_pred CCEEEEEeCCCC-------c-hhHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 358999864211 1 1233444556677778899888776544333222 112 46999999764
No 297
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=44.05 E-value=64 Score=28.32 Aligned_cols=86 Identities=15% Similarity=0.140 Sum_probs=58.2
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCCh--hhHHHhcccCCEEEEcCCCCCCcc
Q 023716 57 LNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE--DVLFEKLELVNGVLYTGGWAKDGL 134 (278)
Q Consensus 57 ~~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~--~~l~~~l~~iDGlIl~GG~~~~p~ 134 (278)
+...|+|.|+..... .. +-..+++|-+.|.+.+.|+++.+. +.++.+-+.+-.+++-=|.-.++.
T Consensus 10 l~~~~vI~Vlr~~~~-----------e~--a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p~~lIGAGTVL~~~ 76 (211)
T COG0800 10 LKAQPVVPVIRGDDV-----------EE--ALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFPEALIGAGTVLNPE 76 (211)
T ss_pred HHHCCeeEEEEeCCH-----------HH--HHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCcccEEccccccCHH
Confidence 355799999976531 11 245779999999999999998653 445555555556666657665554
Q ss_pred chHH--------------HHHHHHHHHHhcCCCCCCcEEE
Q 023716 135 YYAI--------------VEKVFKKILEKNDAGDHFPLYA 160 (278)
Q Consensus 135 ~~~~--------------~~~li~~al~~~~~g~~~PVLG 160 (278)
-.+. ..++++.+...+ +|++=
T Consensus 77 q~~~a~~aGa~fiVsP~~~~ev~~~a~~~~-----ip~~P 111 (211)
T COG0800 77 QARQAIAAGAQFIVSPGLNPEVAKAANRYG-----IPYIP 111 (211)
T ss_pred HHHHHHHcCCCEEECCCCCHHHHHHHHhCC-----CcccC
Confidence 4433 257888888888 88763
No 298
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=43.97 E-value=1.4e+02 Score=27.80 Aligned_cols=67 Identities=16% Similarity=0.085 Sum_probs=38.0
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCC-CChhhHHHhc-----ccCCEEEEcCCCCCCc
Q 023716 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN-EPEDVLFEKL-----ELVNGVLYTGGWAKDG 133 (278)
Q Consensus 62 vIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~-~~~~~l~~~l-----~~iDGlIl~GG~~~~p 133 (278)
.+||++--.....|+. .+-.......++++.|+.++....- ++.+.+.+.+ +.+|-||.+||-...+
T Consensus 157 ~~aIltvsde~~~G~i-----~Dsn~~~L~~~L~~~G~~v~~~~iVpDD~~~I~~al~~a~~~~~DlIITTGGtg~g~ 229 (312)
T PRK03604 157 SAAVLVLSDSIAAGTK-----EDRSGKLIVEGLEEAGFEVSHYTIIPDEPAEIAAAVAAWIAEGYALIITTGGTGLGP 229 (312)
T ss_pred EEEEEEECCcCCCCcE-----EEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHhhhCCCCEEEECCCCCCCC
Confidence 6778765432222222 2222234557899999988765332 2334344322 4589999999977543
No 299
>PRK05569 flavodoxin; Provisional
Probab=43.86 E-value=1.5e+02 Score=23.24 Aligned_cols=43 Identities=19% Similarity=0.216 Sum_probs=29.9
Q ss_pred chhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcC
Q 023716 82 NASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTG 127 (278)
Q Consensus 82 ~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~G 127 (278)
+...++....+-+++.|+.+.+....... . ..+...|+|+|--
T Consensus 14 nT~~iA~~i~~~~~~~g~~v~~~~~~~~~--~-~~~~~~d~iilgs 56 (141)
T PRK05569 14 NVEVLANTIADGAKEAGAEVTIKHVADAK--V-EDVLEADAVAFGS 56 (141)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEECCcCC--H-HHHhhCCEEEEEC
Confidence 46778888888888899887776654322 1 2356789988853
No 300
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=43.11 E-value=2.5e+02 Score=25.19 Aligned_cols=62 Identities=16% Similarity=0.127 Sum_probs=35.4
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCC--hhh-HHHhc-ccCCEEEEcCCCC
Q 023716 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP--EDV-LFEKL-ELVNGVLYTGGWA 130 (278)
Q Consensus 62 vIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~--~~~-l~~~l-~~iDGlIl~GG~~ 130 (278)
.++|..+|..+.. ..... .....+.+++.|..+........ .+. +.+.. +.+|.||+.||..
T Consensus 3 ~~~ii~Np~sg~~------~~~~~-~~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDG 68 (293)
T TIGR00147 3 EAPAILNPTAGKS------NDNKP-LREVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGDG 68 (293)
T ss_pred eEEEEECCCccch------hhHHH-HHHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCCC
Confidence 5778888854321 11222 23467788899988776654332 111 12221 3578999999976
No 301
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=43.03 E-value=91 Score=26.97 Aligned_cols=40 Identities=28% Similarity=0.379 Sum_probs=29.3
Q ss_pred HHHHHHHHHcCCeE-EEEeCCCChhhHHHhcccCCEEEEcC
Q 023716 88 ASYVKFVESAGARV-IPLIYNEPEDVLFEKLELVNGVLYTG 127 (278)
Q Consensus 88 ~syv~~le~~Ga~~-v~i~~~~~~~~l~~~l~~iDGlIl~G 127 (278)
...++.+++.|.++ +.+....+.+.+..+++.+|.|++..
T Consensus 95 ~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMs 135 (201)
T PF00834_consen 95 KETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMS 135 (201)
T ss_dssp HHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEES
T ss_pred HHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEE
Confidence 34678899999986 44444556677888999999999854
No 302
>PRK13405 bchH magnesium chelatase subunit H; Provisional
Probab=42.98 E-value=85 Score=34.74 Aligned_cols=100 Identities=16% Similarity=0.215 Sum_probs=53.6
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCC--ChhhHHHhc-----ccCCEEEEcCCCCC
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE--PEDVLFEKL-----ELVNGVLYTGGWAK 131 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~--~~~~l~~~l-----~~iDGlIl~GG~~~ 131 (278)
.+|+|||+-....--. ....++ ...++.||+.|..|+++-... ....+.+.+ ..+|+||=+-|...
T Consensus 245 ~~p~Vgil~~r~~~~~------~d~~~~-d~lI~~lE~~G~~vipvf~~gl~~~~~v~~~~~~~~~~~vDaiI~~tgF~l 317 (1209)
T PRK13405 245 AKGTVGLLLMRSYVLA------GNTAHY-DGVIEALEARGLRVVPAFASGLDGRPAIEAYFMKDGRPTVDAVVSLTGFSL 317 (1209)
T ss_pred CCCeEEEEEehhhhhc------CCcHHH-HHHHHHHHHCCCeEEEEEecCccchHHHHHHHhccCCCCccEEEEcCcccc
Confidence 4799999987543111 123444 458999999999999874421 112344444 24799883323321
Q ss_pred -C-ccchHHHHHHHHHHHHhcCCCCCCcEEEEe-chHHHHHHH
Q 023716 132 -D-GLYYAIVEKVFKKILEKNDAGDHFPLYAHC-LGFELLTMI 171 (278)
Q Consensus 132 -~-p~~~~~~~~li~~al~~~~~g~~~PVLGIC-lG~QlL~~~ 171 (278)
. |.+.+. ....+...+.| +|+|-.- +=+|-+...
T Consensus 318 ~ggpa~~~~-~~a~~~L~~ln-----VPvl~~~~l~~qt~~~W 354 (1209)
T PRK13405 318 VGGPAYNDS-AAAEEILARLD-----VPYLAAHPLEFQTLEQW 354 (1209)
T ss_pred cCCcccCcc-hhHHHHHHHCC-----CCEEEEeecCCCCHHHH
Confidence 1 222111 11222233456 9998643 344555444
No 303
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=42.71 E-value=29 Score=31.15 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=24.2
Q ss_pred ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechH
Q 023716 118 ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (278)
Q Consensus 118 ~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~ 165 (278)
+.+|.+|.-||.. +.-+..+.....+ +|||||-.|-
T Consensus 24 ~~~Dlvi~iGGDG-------TlL~a~~~~~~~~-----~PvlGIN~G~ 59 (246)
T PRK04761 24 EEADVIVALGGDG-------FMLQTLHRYMNSG-----KPVYGMNRGS 59 (246)
T ss_pred ccCCEEEEECCCH-------HHHHHHHHhcCCC-----CeEEEEeCCC
Confidence 3579999999965 3223334333445 9999999874
No 304
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=42.56 E-value=2.1e+02 Score=24.27 Aligned_cols=42 Identities=24% Similarity=0.358 Sum_probs=27.3
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCChh---hHHHhc-ccCCEEEEcCC
Q 023716 87 AASYVKFVESAGARVIPLIYNEPED---VLFEKL-ELVNGVLYTGG 128 (278)
Q Consensus 87 ~~syv~~le~~Ga~~v~i~~~~~~~---~l~~~l-~~iDGlIl~GG 128 (278)
.....+.+++.|..+.....+.+.+ .+...+ ..+||+|+.+.
T Consensus 18 ~~~i~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 63 (266)
T cd06278 18 LEALSRALQARGYQPLLINTDDDEDLDAALRQLLQYRVDGVIVTSG 63 (266)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHHcCCCEEEEecC
Confidence 3456678888999988876654321 122222 57999999765
No 305
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=42.02 E-value=2.2e+02 Score=24.42 Aligned_cols=45 Identities=9% Similarity=0.068 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCC
Q 023716 84 SYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGG 128 (278)
Q Consensus 84 ~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG 128 (278)
.-+.....+.+++.|..++....+.+.+. +...+ ..+||+|+.+.
T Consensus 15 ~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgii~~~~ 64 (268)
T cd06270 15 GPLLSGVESVARKAGKHLIITAGHHSAEKEREAIEFLLERRCDALILHSK 64 (268)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCchHHHHHHHHHHHHcCCCEEEEecC
Confidence 33445667788889999887754433222 22222 47999999874
No 306
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=42.00 E-value=51 Score=26.99 Aligned_cols=27 Identities=26% Similarity=0.307 Sum_probs=19.1
Q ss_pred CCEEEEcCCCCCCccchHHHHHHHHHHHHhc
Q 023716 120 VNGVLYTGGWAKDGLYYAIVEKVFKKILEKN 150 (278)
Q Consensus 120 iDGlIl~GG~~~~p~~~~~~~~li~~al~~~ 150 (278)
++||.|+||. . ..+...++++.+.+.+
T Consensus 62 ~~gVt~SGGE-l---~~~~l~~ll~~lk~~G 88 (147)
T TIGR02826 62 ISCVLFLGGE-W---NREALLSLLKIFKEKG 88 (147)
T ss_pred CCEEEEechh-c---CHHHHHHHHHHHHHCC
Confidence 5799999998 3 3344567777776655
No 307
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=41.85 E-value=74 Score=29.13 Aligned_cols=43 Identities=12% Similarity=0.067 Sum_probs=28.1
Q ss_pred cCCEEEEcCCCCCCccchH-HHHHHHHHHHHhcCCCCCCcEE-EEec
Q 023716 119 LVNGVLYTGGWAKDGLYYA-IVEKVFKKILEKNDAGDHFPLY-AHCL 163 (278)
Q Consensus 119 ~iDGlIl~GG~~~~p~~~~-~~~~li~~al~~~~~g~~~PVL-GICl 163 (278)
.+|||++.|..+--+.+.. +.+++++.+.+.. +..+||+ ||+.
T Consensus 41 Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~--~~~~pvi~gv~~ 85 (303)
T PRK03620 41 GAAALFAAGGTGEFFSLTPDEYSQVVRAAVETT--AGRVPVIAGAGG 85 (303)
T ss_pred CCCEEEECcCCcCcccCCHHHHHHHHHHHHHHh--CCCCcEEEecCC
Confidence 5899999997664333333 3447888777653 3348887 7764
No 308
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=41.30 E-value=39 Score=30.85 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=40.2
Q ss_pred hhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHH
Q 023716 110 EDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFEL 167 (278)
Q Consensus 110 ~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~Ql 167 (278)
.+.++++|+.++.+++-.|-.-+|...++..++++++.+++ +|+-==--|.-+
T Consensus 92 v~~i~k~L~RlhavVIGPGLGRdp~~~k~i~~iley~~~~d-----vP~VIDaDGL~L 144 (306)
T KOG3974|consen 92 VDIIEKLLQRLHAVVIGPGLGRDPAILKEIAKILEYLRGKD-----VPLVIDADGLWL 144 (306)
T ss_pred HhHHHHHHhheeEEEECCCCCCCHHHHHHHHHHHHHHhcCC-----CcEEEcCCceEe
Confidence 45566778999999997665557888888889999999887 998744444433
No 309
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=40.63 E-value=2.3e+02 Score=25.30 Aligned_cols=67 Identities=12% Similarity=0.014 Sum_probs=39.4
Q ss_pred hhhHHHHHHHHHH--cCCeEEEEeCCCChh----hHHHhc-ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCC
Q 023716 84 SYIAASYVKFVES--AGARVIPLIYNEPED----VLFEKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHF 156 (278)
Q Consensus 84 ~yi~~syv~~le~--~Ga~~v~i~~~~~~~----~l~~~l-~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~ 156 (278)
.-+.....+.+++ .|..++..+.+.+.+ .+..++ .++||+|+.+.. +. .....++.+.+.+ +
T Consensus 15 ~~~~~gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~~---~~---~~~~~~~~~~~~g-----i 83 (303)
T cd01539 15 SLVRKNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVD---PT---AAQTVINKAKQKN-----I 83 (303)
T ss_pred HHHHHHHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecCc---hh---hHHHHHHHHHHCC-----C
Confidence 3344556677777 677777766554433 233323 479999997532 11 2235666666667 8
Q ss_pred cEEEE
Q 023716 157 PLYAH 161 (278)
Q Consensus 157 PVLGI 161 (278)
||.-+
T Consensus 84 PvV~~ 88 (303)
T cd01539 84 PVIFF 88 (303)
T ss_pred CEEEe
Confidence 87665
No 310
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=40.50 E-value=1e+02 Score=26.48 Aligned_cols=43 Identities=26% Similarity=0.230 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHcCCeEEEEeCCCChhhHH---H-hc-ccCCEEEEcCC
Q 023716 86 IAASYVKFVESAGARVIPLIYNEPEDVLF---E-KL-ELVNGVLYTGG 128 (278)
Q Consensus 86 i~~syv~~le~~Ga~~v~i~~~~~~~~l~---~-~l-~~iDGlIl~GG 128 (278)
+.....+.+++.|..++....+.+.+... + +. ..+||+|+.+-
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (263)
T cd06280 17 VSRAVEDAAYRAGLRVILCNTDEDPEKEAMYLELMEEERVTGVIFAPT 64 (263)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 44566778888999988776554433221 2 22 36999999874
No 311
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=40.20 E-value=2.8e+02 Score=24.91 Aligned_cols=60 Identities=15% Similarity=0.187 Sum_probs=35.2
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcC
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTG 127 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~G 127 (278)
...||++..... + ....-+.....+.+++.|..+++...+.+.+. +..+. ..+||+|+.+
T Consensus 63 ~~~Igvi~~~~~-------~-~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiI~~~ 127 (331)
T PRK14987 63 SRAIGVLLPSLT-------N-QVFAEVLRGIESVTDAHGYQTMLAHYGYKPEMEQERLESMLSWNIDGLILTE 127 (331)
T ss_pred CCEEEEEeCCCc-------c-hhHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcC
Confidence 358999863211 1 12333445566778888998887665433322 22222 4799999975
No 312
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=40.02 E-value=2.4e+02 Score=24.11 Aligned_cols=46 Identities=13% Similarity=0.063 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCCC
Q 023716 84 SYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (278)
Q Consensus 84 ~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~ 129 (278)
.-+.....+.+++.|..++....+.+.+. +..+. .++||||+.+..
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~ 65 (269)
T cd06275 15 AEVVRGVEQYCYRQGYNLILCNTEGDPERQRSYLRMLAQKRVDGLLVMCSE 65 (269)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCC
Confidence 33445666778888998887764444332 22222 469999998753
No 313
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.58 E-value=34 Score=30.92 Aligned_cols=36 Identities=8% Similarity=-0.014 Sum_probs=23.4
Q ss_pred ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechH
Q 023716 118 ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (278)
Q Consensus 118 ~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~ 165 (278)
+.+|.++.-||.. +.-...+.+...+ +||+||-.|.
T Consensus 32 ~~~D~vi~iGGDG-------T~L~a~~~~~~~~-----iPilGIN~G~ 67 (259)
T PRK00561 32 DGADYLFVLGGDG-------FFVSTAANYNCAG-----CKVVGINTGH 67 (259)
T ss_pred CCCCEEEEECCcH-------HHHHHHHHhcCCC-----CcEEEEecCC
Confidence 4589999999965 2222333333344 9999998773
No 314
>PRK06851 hypothetical protein; Provisional
Probab=39.57 E-value=97 Score=29.54 Aligned_cols=51 Identities=16% Similarity=0.100 Sum_probs=39.2
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcC
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTG 127 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~G 127 (278)
+.++-|.+.|+. +.+.+...+.+.+.+.|.++...+...++ +++|+||||.
T Consensus 214 ~~~~~i~G~pG~----------GKstl~~~i~~~a~~~G~~v~~~hC~~dP-------dslD~viIPe 264 (367)
T PRK06851 214 KNRYFLKGRPGT----------GKSTMLKKIAKAAEERGFDVEVYHCGFDP-------DSLDMVIIPE 264 (367)
T ss_pred ceEEEEeCCCCC----------cHHHHHHHHHHHHHhCCCeEEEEeCCCCC-------CCcceEEecc
Confidence 457888887764 35666777888888899999999876554 3689999987
No 315
>TIGR02025 BchH magnesium chelatase, H subunit. This model represents the H subunit of the magnesium chelatase complex responsible for magnesium insertion into the protoporphyrin IX ring in the biosynthesis of both chlorophyll and bacteriochlorophyll. In chlorophyll-utilizing species, this gene is known as ChlH, while in bacteriochlorophyll-utilizing spoecies it is called BchH. Subunit H is the largest (~140kDa) of the three subunits (the others being BchD/ChlD and BchI/ChlI), and is known to bind protoporphyrin IX. Subunit H is homologous to the CobN subunit of cobaltochelatase and by anology with that enzyme, subunit H is believed to also bind the magnesium ion which is inserted into the ring. In conjunction with the hydrolysis of ATP by subunits I and D, a conformation change is believed to happen in subunit H causing the magnesium ion insertion into the distorted protoporphyrin ring.
Probab=39.50 E-value=75 Score=35.15 Aligned_cols=101 Identities=14% Similarity=0.152 Sum_probs=54.8
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCC--ChhhHHHhc----c---cCCEEEEcCCC
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE--PEDVLFEKL----E---LVNGVLYTGGW 129 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~--~~~~l~~~l----~---~iDGlIl~GG~ 129 (278)
.+|+|||+.....--. .+..++ ...++.||+.|..|+++-... ....+.+.+ . .+|+||=+-|.
T Consensus 238 ~~p~Vgil~~r~~~~~------~~~~~~-dalI~~lE~~G~~vipvf~~gl~~~~~v~~~~~~~~~~~~~vdaiI~~~gF 310 (1216)
T TIGR02025 238 KAPRVGLLLLRKHLLT------GNQAHY-DNLIRELEAAGLQVVPAFSGGLDGRVAVEDFFMKDSTPSVKVDAVVSLTGF 310 (1216)
T ss_pred CCCEEEEEEchhhhhc------CCcHHH-HHHHHHHHHCCCcEEEEEecCccccHHHHHHHHhcccCCCCccEEEECCch
Confidence 4799999987643221 123444 468899999999999874332 111222222 1 58998833232
Q ss_pred C-C-CccchHHHHHHHHHHHHhcCCCCCCcEEE-EechHHHHHHHH
Q 023716 130 A-K-DGLYYAIVEKVFKKILEKNDAGDHFPLYA-HCLGFELLTMII 172 (278)
Q Consensus 130 ~-~-~p~~~~~~~~li~~al~~~~~g~~~PVLG-IClG~QlL~~~~ 172 (278)
. + .|.+... ....+...+.| +|++- +-+.+|-+....
T Consensus 311 ~l~ggpa~~~~-~~a~~~L~~ln-----VPvl~~~~l~~qt~~~W~ 350 (1216)
T TIGR02025 311 SLVGGPAGSDA-AAAVEILKGLD-----VPYIVAIPLLFQTIESWT 350 (1216)
T ss_pred hccCCCccccc-hhhHHHHHHCC-----CCEEEEEecCCCCHHHHH
Confidence 2 1 1111111 11222233457 99986 446567666554
No 316
>PRK06756 flavodoxin; Provisional
Probab=39.43 E-value=2e+02 Score=22.94 Aligned_cols=44 Identities=11% Similarity=0.185 Sum_probs=30.0
Q ss_pred chhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcC
Q 023716 82 NASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTG 127 (278)
Q Consensus 82 ~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~G 127 (278)
+...++....+.+++.|..+.++....... . ..+...|+|+|.-
T Consensus 14 nTe~vA~~ia~~l~~~g~~v~~~~~~~~~~-~-~~~~~~d~vi~gs 57 (148)
T PRK06756 14 NTEEMADHIAGVIRETENEIEVIDIMDSPE-A-SILEQYDGIILGA 57 (148)
T ss_pred hHHHHHHHHHHHHhhcCCeEEEeehhccCC-H-HHHhcCCeEEEEe
Confidence 466778888888888998887766533221 1 2366789988853
No 317
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=38.92 E-value=1.5e+02 Score=28.65 Aligned_cols=41 Identities=12% Similarity=0.211 Sum_probs=26.6
Q ss_pred HHHHHHHcCCeEEEEeCC-CChhh----HHHhcccCCEEEEcCCCC
Q 023716 90 YVKFVESAGARVIPLIYN-EPEDV----LFEKLELVNGVLYTGGWA 130 (278)
Q Consensus 90 yv~~le~~Ga~~v~i~~~-~~~~~----l~~~l~~iDGlIl~GG~~ 130 (278)
..+++++.|..+...... ++.+. +...++.+|-||++||-.
T Consensus 25 l~~~L~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlVIttGGlg 70 (413)
T TIGR00200 25 LADFLAHQGLPLSRRTTVGDNPERLKTIIRIASERADVLIFNGGLG 70 (413)
T ss_pred HHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 346789999987644222 23333 344556799999999854
No 318
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=38.64 E-value=1.9e+02 Score=25.23 Aligned_cols=46 Identities=4% Similarity=-0.330 Sum_probs=28.7
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHH----hc-ccCCEEEEcCC
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNEPEDVLFE----KL-ELVNGVLYTGG 128 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~----~l-~~iDGlIl~GG 128 (278)
..-+.....+.+++.|..++....+.+.+...+ .. .++||||+.+.
T Consensus 14 ~~~~~~gi~~~~~~~G~~~~~~~~~~d~~~~~~~i~~~~~~~vdgiii~~~ 64 (272)
T cd06313 14 CAQGKQAADEAGKLLGVDVTWYGGALDAVKQVAAIENMASQGWDFIAVDPL 64 (272)
T ss_pred HHHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 334455666778889998888755433332222 22 46999999653
No 319
>PF02595 Gly_kinase: Glycerate kinase family; InterPro: IPR004381 This family includes glycerate kinase 2 (2.7.1.31 from EC), which catalyses the phosphorylation of (R)-glycerate to 3-phospho-(R)-glycerate in the presence of ATP. These proteins consist of two different alpha/beta domains: domain 1 has a flavodoxin-like fold, while domain 2 has a restriction enzyme-like fold (domain 2 is inserted into domain 1).; GO: 0008887 glycerate kinase activity, 0031388 organic acid phosphorylation; PDB: 3CWC_B 1TO6_A.
Probab=38.09 E-value=14 Score=35.29 Aligned_cols=45 Identities=22% Similarity=0.135 Sum_probs=24.8
Q ss_pred HHHhcccCCEEEEcCCCCCC-ccchHH-HHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 113 LFEKLELVNGVLYTGGWAKD-GLYYAI-VEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 113 l~~~l~~iDGlIl~GG~~~~-p~~~~~-~~~li~~al~~~~~g~~~PVLGICl 163 (278)
+++.++.+| +||||-+..| ....+. ...+.+.|.+.+ +|++.||-
T Consensus 278 l~~~l~~aD-lVITGEG~~D~Qtl~GK~p~~Va~~A~~~~-----vPviav~G 324 (377)
T PF02595_consen 278 LEERLEDAD-LVITGEGRLDAQTLAGKVPGGVARLAKKHG-----VPVIAVAG 324 (377)
T ss_dssp HHHHCCC-S-EEEE--CECSTTTTTTCHHHHHHCCHCCTT-------EEEEEC
T ss_pred HHHHhcCCC-EEEECccccccccCCCcHHHHHHHHHHHcC-----CcEEEEeC
Confidence 567788888 5777744333 233332 235666666666 99999993
No 320
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=37.51 E-value=70 Score=25.62 Aligned_cols=43 Identities=26% Similarity=0.313 Sum_probs=28.2
Q ss_pred HHHHHHHcCCeEEEEe-CCCChhhHHH----hcccCCEEEEcCCCCCC
Q 023716 90 YVKFVESAGARVIPLI-YNEPEDVLFE----KLELVNGVLYTGGWAKD 132 (278)
Q Consensus 90 yv~~le~~Ga~~v~i~-~~~~~~~l~~----~l~~iDGlIl~GG~~~~ 132 (278)
..+++++.|+++.... ..++++.+.+ .++..|-||.+||-...
T Consensus 22 l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~D~VittGG~g~~ 69 (144)
T PF00994_consen 22 LAALLEELGIEVIRYGIVPDDPDAIKEALRRALDRADLVITTGGTGPG 69 (144)
T ss_dssp HHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHHTTSEEEEESSSSSS
T ss_pred HHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhccCCEEEEcCCcCcc
Confidence 4568889999876331 1234444444 34678999999997643
No 321
>PRK00170 azoreductase; Reviewed
Probab=37.22 E-value=1.5e+02 Score=24.78 Aligned_cols=39 Identities=10% Similarity=0.055 Sum_probs=26.0
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHc--CCeEEEEeC
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA--GARVIPLIY 106 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~--Ga~~v~i~~ 106 (278)
.++.|.++|... ......+...+++.+++. |..+..+..
T Consensus 3 kil~i~gSpr~~-------~s~s~~l~~~~~~~l~~~~~~~~v~~~dL 43 (201)
T PRK00170 3 KVLVIKSSILGD-------YSQSMQLGDAFIEAYKEAHPDDEVTVRDL 43 (201)
T ss_pred eEEEEecCCCCC-------CcHHHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 478888888532 123445667788888887 887766643
No 322
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=37.06 E-value=1.9e+02 Score=25.68 Aligned_cols=58 Identities=9% Similarity=0.118 Sum_probs=33.1
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEe-CCC---------ChhhHHHhc-----ccCCEEE
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLI-YNE---------PEDVLFEKL-----ELVNGVL 124 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~-~~~---------~~~~l~~~l-----~~iDGlI 124 (278)
-..|+|+|-. ...+.....+++++.|..++-+. .+. +++.+.+.. ..+|+|+
T Consensus 120 ~~RIalvTPY-------------~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAif 186 (239)
T TIGR02990 120 VRRISLLTPY-------------TPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALF 186 (239)
T ss_pred CCEEEEECCC-------------cHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEE
Confidence 3567777643 23345667788888888776652 111 233333322 2577787
Q ss_pred EcCCCC
Q 023716 125 YTGGWA 130 (278)
Q Consensus 125 l~GG~~ 130 (278)
+++...
T Consensus 187 isCTnL 192 (239)
T TIGR02990 187 LSCTAL 192 (239)
T ss_pred EeCCCc
Confidence 776543
No 323
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=37.02 E-value=2.5e+02 Score=28.94 Aligned_cols=75 Identities=17% Similarity=0.149 Sum_probs=35.6
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHc-CCeEEEEeCC-CChhhHHHhc------ccCCEEEEcCC
Q 023716 57 LNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA-GARVIPLIYN-EPEDVLFEKL------ELVNGVLYTGG 128 (278)
Q Consensus 57 ~~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~-Ga~~v~i~~~-~~~~~l~~~l------~~iDGlIl~GG 128 (278)
-+.+|.++|++--.....+...+. ....+..-+-...+.. |+.++..... ++.+.+.+.+ +.+|-||.+||
T Consensus 455 ~~~~~rvaIIt~sde~~~~~~~D~-sg~~~~~il~~n~~~l~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVItTGG 533 (659)
T PLN02699 455 QNPEVKVAILTVSDTVSSGAGPDR-SGPRAVSVVNSSSEKLGGAKVVATAVVPDDVEKIKDVLQKWSDIDRMDLILTLGG 533 (659)
T ss_pred ccCCcEEEEEEECCcccCCCcccc-cchHHHHHHHhhhhhcCCcEEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 356789999765322111111110 0111111111123334 8877654322 2334444322 45899999999
Q ss_pred CCCC
Q 023716 129 WAKD 132 (278)
Q Consensus 129 ~~~~ 132 (278)
....
T Consensus 534 ts~g 537 (659)
T PLN02699 534 TGFT 537 (659)
T ss_pred ccCC
Confidence 7653
No 324
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=37.02 E-value=2.2e+02 Score=27.22 Aligned_cols=85 Identities=8% Similarity=0.130 Sum_probs=48.5
Q ss_pred HHHHHHHHcCCeEEEEeCCCChhhHHHhc-ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEE---EEech
Q 023716 89 SYVKFVESAGARVIPLIYNEPEDVLFEKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY---AHCLG 164 (278)
Q Consensus 89 syv~~le~~Ga~~v~i~~~~~~~~l~~~l-~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVL---GIClG 164 (278)
.-++||++.--.|+++.-..+.++..... ..+|||+++|-+.-...+.-..-..+..+.+. .++.+||+ ||.+|
T Consensus 214 ~di~wlr~~~~~PiivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~a--v~~~~~vi~dGGIr~G 291 (367)
T PLN02493 214 KDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKA--TQGRIPVFLDGGVRRG 291 (367)
T ss_pred HHHHHHHhccCCCEEeecCCCHHHHHHHHHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHH--hCCCCeEEEeCCcCcH
Confidence 34788988655566665444555555444 47999999984431111111111222222211 12338888 89999
Q ss_pred HHHH-HHHHhCc
Q 023716 165 FELL-TMIISKD 175 (278)
Q Consensus 165 ~QlL-~~~~Gg~ 175 (278)
..++ +.++|.+
T Consensus 292 ~Dv~KALALGA~ 303 (367)
T PLN02493 292 TDVFKALALGAS 303 (367)
T ss_pred HHHHHHHHcCCC
Confidence 9998 5567766
No 325
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=36.99 E-value=2.8e+02 Score=25.66 Aligned_cols=82 Identities=6% Similarity=-0.057 Sum_probs=46.3
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEE-eCCCChh----hHHHhc-ccCCEEEEcCCCCCCcc
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPL-IYNEPED----VLFEKL-ELVNGVLYTGGWAKDGL 134 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i-~~~~~~~----~l~~~l-~~iDGlIl~GG~~~~p~ 134 (278)
..|+++...... ....-+.....++.++.|..++.. +.+.+.+ .+..++ +++|||++.+-. +
T Consensus 24 ~~i~~v~k~~~~--------pf~~~~~~Gi~~aa~~~G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv~~~d---~- 91 (336)
T PRK15408 24 ERIAFIPKLVGV--------GFFTSGGNGAKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAVS---P- 91 (336)
T ss_pred cEEEEEECCCCC--------HHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecCC---H-
Confidence 368887754321 123344556778888899888763 3322222 223333 579999997432 1
Q ss_pred chHHHHHHHHHHHHhcCCCCCCcEEEE
Q 023716 135 YYAIVEKVFKKILEKNDAGDHFPLYAH 161 (278)
Q Consensus 135 ~~~~~~~li~~al~~~~~g~~~PVLGI 161 (278)
......++.+.+++ +||.-+
T Consensus 92 --~al~~~l~~a~~~g-----IpVV~~ 111 (336)
T PRK15408 92 --DGLCPALKRAMQRG-----VKVLTW 111 (336)
T ss_pred --HHHHHHHHHHHHCC-----CeEEEe
Confidence 12345667677666 666554
No 326
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.78 E-value=2.7e+02 Score=23.75 Aligned_cols=45 Identities=9% Similarity=0.071 Sum_probs=27.3
Q ss_pred hhhHHHHHHHHHHcCCeEEEEeCCCChh---hHHHhc--ccCCEEEEcCC
Q 023716 84 SYIAASYVKFVESAGARVIPLIYNEPED---VLFEKL--ELVNGVLYTGG 128 (278)
Q Consensus 84 ~yi~~syv~~le~~Ga~~v~i~~~~~~~---~l~~~l--~~iDGlIl~GG 128 (278)
.-+.....+.+++.|..++....+...+ .+.+.+ ..+||+|+.+.
T Consensus 20 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~ 69 (270)
T cd06294 20 IEVLRGISAVANENGYDISLATGKNEEELLEEVKKMIQQKRVDGFILLYS 69 (270)
T ss_pred HHHHHHHHHHHHHCCCEEEEecCCCcHHHHHHHHHHHHHcCcCEEEEecC
Confidence 3344556677888998887665433322 233333 24999999764
No 327
>PRK09271 flavodoxin; Provisional
Probab=36.58 E-value=2.3e+02 Score=23.03 Aligned_cols=46 Identities=17% Similarity=-0.051 Sum_probs=28.0
Q ss_pred chhhhHHHHHHHHHHcCCeEEEEeCCCCh-hhHHHhcccCCEEEEcC
Q 023716 82 NASYIAASYVKFVESAGARVIPLIYNEPE-DVLFEKLELVNGVLYTG 127 (278)
Q Consensus 82 ~~~yi~~syv~~le~~Ga~~v~i~~~~~~-~~l~~~l~~iDGlIl~G 127 (278)
....++....+.++..|..+.+....... ..+...+...|+|+|..
T Consensus 13 nTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vilgt 59 (160)
T PRK09271 13 NTREVAREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLLGT 59 (160)
T ss_pred hHHHHHHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEEEC
Confidence 35667777888899999877655433211 11122344678888855
No 328
>PRK00549 competence damage-inducible protein A; Provisional
Probab=36.32 E-value=1.6e+02 Score=28.38 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=26.2
Q ss_pred HHHHHHHcCCeEEEEeCC-CChhhHH----HhcccCCEEEEcCCCC
Q 023716 90 YVKFVESAGARVIPLIYN-EPEDVLF----EKLELVNGVLYTGGWA 130 (278)
Q Consensus 90 yv~~le~~Ga~~v~i~~~-~~~~~l~----~~l~~iDGlIl~GG~~ 130 (278)
..+.+++.|..+..+... ++.+.+. ..++..|-||++||-.
T Consensus 25 L~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVItTGGlG 70 (414)
T PRK00549 25 LSEKLAELGIDVYHQTVVGDNPERLLSALEIAEERSDLIITTGGLG 70 (414)
T ss_pred HHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHhccCCCEEEECCCCC
Confidence 345789999977644222 2333333 3446789999999855
No 329
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=36.23 E-value=1.2e+02 Score=30.38 Aligned_cols=78 Identities=9% Similarity=0.109 Sum_probs=44.4
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCC---ChhhHHHhcccCCEEEEcCCCCCCccc
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE---PEDVLFEKLELVNGVLYTGGWAKDGLY 135 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~---~~~~l~~~l~~iDGlIl~GG~~~~p~~ 135 (278)
.+|+||+++..+... ... ...+++.|+ .+..+..+.... ..+.+.+.|+++|.||+.|-.. .+
T Consensus 182 ~~~~V~~l~ghGE~~--------~~~--~~~l~~~L~-~~y~v~~l~l~~~~~~~~~ip~~l~d~d~LvI~~P~~---~l 247 (552)
T TIGR03521 182 REKRIAVLKGNGELA--------DLQ--IADLVSTLK-EYYFIAPFTLDSVAANPAKTLADLKKFDLIVIAKPTE---AF 247 (552)
T ss_pred cCceEEEEeCCCCCC--------hHH--HHHHHHHHH-hcCceeeecchhcccCcccccccccCcCEEEEeCCCc---cC
Confidence 579999999654211 011 135666776 677777765531 1123344456899999998652 12
Q ss_pred hHHHHHHHHHHHHhc
Q 023716 136 YAIVEKVFKKILEKN 150 (278)
Q Consensus 136 ~~~~~~li~~al~~~ 150 (278)
.......++..++++
T Consensus 248 s~~e~~~Ldqfl~~G 262 (552)
T TIGR03521 248 SEREKYILDQYIMNG 262 (552)
T ss_pred CHHHHHHHHHHHHcC
Confidence 233345555555544
No 330
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=36.14 E-value=2.5e+02 Score=24.25 Aligned_cols=45 Identities=16% Similarity=0.085 Sum_probs=27.1
Q ss_pred hhhHHHHHHHHHHcCCeEEEEe-CCCChhh----HHHhc-ccCCEEEEcCC
Q 023716 84 SYIAASYVKFVESAGARVIPLI-YNEPEDV----LFEKL-ELVNGVLYTGG 128 (278)
Q Consensus 84 ~yi~~syv~~le~~Ga~~v~i~-~~~~~~~----l~~~l-~~iDGlIl~GG 128 (278)
..+.....+.+++.|..+.... .+.+.+. +..+. ..+||+|+.+.
T Consensus 14 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 64 (271)
T cd06314 14 KIAEAGVKAAGKELGVDVEFVVPQQGTVNAQLRMLEDLIAEGVDGIAISPI 64 (271)
T ss_pred HHHHHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 3344556678888999887763 2223222 22222 47999999864
No 331
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=36.12 E-value=2e+02 Score=22.37 Aligned_cols=66 Identities=11% Similarity=0.061 Sum_probs=40.4
Q ss_pred HHHHHHHH-cCCeEEEEeC--CCChhhHHHhc--ccCCEEEEcCCC-CCCccchHHHHHHHHHHHHhcCCCCCCcEEE
Q 023716 89 SYVKFVES-AGARVIPLIY--NEPEDVLFEKL--ELVNGVLYTGGW-AKDGLYYAIVEKVFKKILEKNDAGDHFPLYA 160 (278)
Q Consensus 89 syv~~le~-~Ga~~v~i~~--~~~~~~l~~~l--~~iDGlIl~GG~-~~~p~~~~~~~~li~~al~~~~~g~~~PVLG 160 (278)
.-.++|++ .|..+..+.. .....++.+.+ ..+|.||.+-.+ +..+. ......+-+.|++.+ +|++-
T Consensus 35 gTa~~L~~~~Gi~v~~vk~~~~~g~~~i~~~i~~g~i~~VInt~~~~~~~~~-~~dg~~iRr~a~~~~-----Ip~~T 106 (115)
T cd01422 35 TTGLLIQEATGLTVNRMKSGPLGGDQQIGALIAEGEIDAVIFFRDPLTAQPH-EPDVKALLRLCDVYN-----IPLAT 106 (115)
T ss_pred hHHHHHHHhhCCcEEEEecCCCCchhHHHHHHHcCceeEEEEcCCCCCCCcc-cccHHHHHHHHHHcC-----CCEEE
Confidence 44578888 8887766643 23333344444 369999988654 32221 123446778888888 99864
No 332
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.07 E-value=1.9e+02 Score=28.23 Aligned_cols=64 Identities=11% Similarity=0.189 Sum_probs=44.2
Q ss_pred CCCCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCC--hhhHHHhcccCCEEEEcCCCC
Q 023716 56 KLNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP--EDVLFEKLELVNGVLYTGGWA 130 (278)
Q Consensus 56 ~~~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~--~~~l~~~l~~iDGlIl~GG~~ 130 (278)
+.+.+|.|.|++.|++... +-.+ --|-|...|..+++.....+ .+....+..++|++.++-...
T Consensus 262 n~~~~P~V~Ilcgpgnngg--------dg~v---~gRHL~~~G~~~vi~~pk~s~~~~~~~~L~~q~~~~~Ip~v~~ 327 (453)
T KOG2585|consen 262 NSHQWPLVAILCGPGNNGG--------DGLV---CGRHLAQHGYTPVIYYPKRSLNVDLYKSLVKQCDGFSIPSVSE 327 (453)
T ss_pred ccCCCceEEEEeCCCCccc--------hhHH---HHHHHHHcCceeEEEeecCccchhHHHHHHHHhcCcccccccc
Confidence 4467899999999976431 1111 33788899988877654432 245566778899999987654
No 333
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=35.73 E-value=2e+02 Score=29.07 Aligned_cols=68 Identities=12% Similarity=0.226 Sum_probs=42.0
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHH
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFEL 167 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~Ql 167 (278)
.|+|+++.+.|.+|..|.+..+..... .+ .. ..|.+.....++.+.+. .-.+.+=++|.|.|=-+
T Consensus 237 ~SlVr~lv~qG~~VflIsW~nP~~~~r-~~------------~l-dDYv~~i~~Ald~V~~~-tG~~~vnl~GyC~GGtl 301 (560)
T TIGR01839 237 KSFVQYCLKNQLQVFIISWRNPDKAHR-EW------------GL-STYVDALKEAVDAVRAI-TGSRDLNLLGACAGGLT 301 (560)
T ss_pred chHHHHHHHcCCeEEEEeCCCCChhhc-CC------------CH-HHHHHHHHHHHHHHHHh-cCCCCeeEEEECcchHH
Confidence 689999999999999998765332111 00 00 12332223444444332 23445789999999988
Q ss_pred HHH
Q 023716 168 LTM 170 (278)
Q Consensus 168 L~~ 170 (278)
+..
T Consensus 302 ~a~ 304 (560)
T TIGR01839 302 CAA 304 (560)
T ss_pred HHH
Confidence 886
No 334
>PRK08005 epimerase; Validated
Probab=35.40 E-value=1.4e+02 Score=26.12 Aligned_cols=40 Identities=10% Similarity=0.052 Sum_probs=30.1
Q ss_pred HHHHHHHHHcCCeE-EEEeCCCChhhHHHhcccCCEEEEcC
Q 023716 88 ASYVKFVESAGARV-IPLIYNEPEDVLFEKLELVNGVLYTG 127 (278)
Q Consensus 88 ~syv~~le~~Ga~~-v~i~~~~~~~~l~~~l~~iDGlIl~G 127 (278)
...++.+++.|.++ +-+....+.+.+..+++.+|.|++..
T Consensus 96 ~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMs 136 (210)
T PRK08005 96 SEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMT 136 (210)
T ss_pred HHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEE
Confidence 34678889999887 34444556777888899999999843
No 335
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=34.42 E-value=1.4e+02 Score=25.50 Aligned_cols=68 Identities=16% Similarity=0.058 Sum_probs=39.4
Q ss_pred HHHHHHHH-HcCCeEEEEeCCCChhhH-HHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechH
Q 023716 88 ASYVKFVE-SAGARVIPLIYNEPEDVL-FEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (278)
Q Consensus 88 ~syv~~le-~~Ga~~v~i~~~~~~~~l-~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~ 165 (278)
..+.+.++ ..|.++.... +.+.+ .+.|+++|.||+...... ....+.++.++..++++ .+++|+..+.
T Consensus 22 ~~l~~ll~~~~~~~v~~~~---~~~~~~~~~L~~~Dvvv~~~~~~~--~l~~~~~~al~~~v~~G-----gglv~lH~~~ 91 (217)
T PF06283_consen 22 KALAQLLEESEGFEVTVTE---DPDDLTPENLKGYDVVVFYNTGGD--ELTDEQRAALRDYVENG-----GGLVGLHGAA 91 (217)
T ss_dssp HHHHHHHHHTTCEEEEECC---SGGCTSHHCHCT-SEEEEE-SSCC--GS-HHHHHHHHHHHHTT------EEEEEGGGG
T ss_pred HHHHHHhccCCCEEEEEEe---CcccCChhHhcCCCEEEEECCCCC--cCCHHHHHHHHHHHHcC-----CCEEEEcccc
Confidence 34556666 4566666542 22222 235899999998765421 13345566777778888 9999999443
No 336
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=34.30 E-value=2.9e+02 Score=24.10 Aligned_cols=45 Identities=13% Similarity=0.048 Sum_probs=30.2
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCC
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGW 129 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~ 129 (278)
..-+.....+.+++.|..+++...+...+.+. -.++||+|+.+..
T Consensus 22 ~~~~~~~i~~~~~~~gy~~~~~~~~~~~~~l~--~~~vdgiIi~~~~ 66 (269)
T cd06287 22 MMEVAAAAAESALERGLALCLVPPHEADSPLD--ALDIDGAILVEPM 66 (269)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCchhhhh--ccCcCeEEEecCC
Confidence 44455666788888999999887653333222 2479999997643
No 337
>PLN03241 magnesium chelatase subunit H; Provisional
Probab=34.27 E-value=1.8e+02 Score=32.64 Aligned_cols=40 Identities=20% Similarity=0.368 Sum_probs=28.4
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeC
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIY 106 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~ 106 (278)
.+|+|||+.....-. . ...++ ...++.||+.|..|+++-.
T Consensus 315 ~~p~Vgil~yrs~~~------~-~~~~i-dalI~~LE~~G~~vipvf~ 354 (1353)
T PLN03241 315 DAPRVAILLYRKHVI------T-KQPYL-ADLVRQMEESGVLPVPIFI 354 (1353)
T ss_pred CCCEEEEEecchhhh------c-CChHH-HHHHHHHHHCCCeEEEEEe
Confidence 479999998764321 1 13444 4588999999999998843
No 338
>PRK09701 D-allose transporter subunit; Provisional
Probab=33.86 E-value=3e+02 Score=24.62 Aligned_cols=82 Identities=7% Similarity=-0.043 Sum_probs=44.6
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEe--CCCChh----hHHHhc-ccCCEEEEcCCCCCCc
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLI--YNEPED----VLFEKL-ELVNGVLYTGGWAKDG 133 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~--~~~~~~----~l~~~l-~~iDGlIl~GG~~~~p 133 (278)
-.||++..-.. ......+.....+.+++.|..+..+. ...+.+ .+...+ .++||+|+.+...
T Consensus 25 ~~Igvi~~~~~--------~~f~~~~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~--- 93 (311)
T PRK09701 25 AEYAVVLKTLS--------NPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSS--- 93 (311)
T ss_pred CeEEEEeCCCC--------CHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh---
Confidence 37888764321 11244445666778888898887763 222221 122333 4699999986532
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCcEEEE
Q 023716 134 LYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (278)
Q Consensus 134 ~~~~~~~~li~~al~~~~~g~~~PVLGI 161 (278)
. .....++.+.+++ +|+..+
T Consensus 94 ~---~~~~~l~~~~~~g-----iPvV~~ 113 (311)
T PRK09701 94 V---NLVMPVARAWKKG-----IYLVNL 113 (311)
T ss_pred H---HHHHHHHHHHHCC-----CcEEEe
Confidence 1 1112234445555 777655
No 339
>PRK11914 diacylglycerol kinase; Reviewed
Probab=33.31 E-value=3.7e+02 Score=24.31 Aligned_cols=61 Identities=15% Similarity=0.211 Sum_probs=34.6
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHh-----cccCCEEEEcCCCC
Q 023716 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEK-----LELVNGVLYTGGWA 130 (278)
Q Consensus 62 vIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~-----l~~iDGlIl~GG~~ 130 (278)
.+.|+-+|..+.. . ..-.....++.+++.|..+.++.... .....++ .+..|.||+.||..
T Consensus 10 ~~~iI~NP~sG~g------~-~~~~~~~~~~~l~~~g~~~~~~~t~~-~~~~~~~a~~~~~~~~d~vvv~GGDG 75 (306)
T PRK11914 10 KVTVLTNPLSGHG------A-APHAAERAIARLHHRGVDVVEIVGTD-AHDARHLVAAALAKGTDALVVVGGDG 75 (306)
T ss_pred eEEEEECCCCCCC------c-HHHHHHHHHHHHHHcCCeEEEEEeCC-HHHHHHHHHHHHhcCCCEEEEECCch
Confidence 4667777754321 1 11123456778899998766554322 2222222 24578999999965
No 340
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=33.14 E-value=1.9e+02 Score=25.83 Aligned_cols=62 Identities=16% Similarity=0.142 Sum_probs=35.9
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHH----hc-ccCCEEEEcCCC
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFE----KL-ELVNGVLYTGGW 129 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~----~l-~~iDGlIl~GG~ 129 (278)
..+||++....+ +. ...-+.....+.+++.|..+++...+.+.+...+ +. .++||+|+.+..
T Consensus 59 ~~~Ig~i~~~~~-------~~-~~~~~~~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~~~vdGvIi~~~~ 125 (311)
T TIGR02405 59 DKVVAVIVSRLD-------SP-SENLAVSGMLPVFYTAGYDPIIMESQFSPQLTNEHLSVLQKRNVDGVILFGFT 125 (311)
T ss_pred CCEEEEEeCCcc-------cc-cHHHHHHHHHHHHHHCCCeEEEecCCCChHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 358999863211 11 1223445566778889999887754433332222 22 369999998643
No 341
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=32.86 E-value=97 Score=26.98 Aligned_cols=79 Identities=15% Similarity=0.089 Sum_probs=43.3
Q ss_pred HHHHHHHHHcCCeEEEEeCCCCh---hhHHHhc-ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 88 ASYVKFVESAGARVIPLIYNEPE---DVLFEKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~---~~l~~~l-~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGICl 163 (278)
..+.+.|++.|+.++.+|.-... +.....+ +..|.|+|+...++.. ......-++ ...+ .|++.|.-
T Consensus 13 ~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~l~~~~d~iifTS~naV~~--~~~~~~~~~--~~~~-----~~~~aVG~ 83 (240)
T PRK09189 13 ERTAARLRAMGHEPVLLPLSRPVHDVAAAFTALSEPHGAIAVTSAEAVRH--LAALGERLL--PHLA-----LPLFAVGE 83 (240)
T ss_pred HHHHHHHHHCCCceEEecccccccChhhhhhhhcCCcCEEEEECHHHHHH--HHhcchhhH--HhcC-----CeEEEEcH
Confidence 45678999999999998765421 2222223 3479999997654321 000000000 0123 67777766
Q ss_pred hHHHHHHHHhCc
Q 023716 164 GFELLTMIISKD 175 (278)
Q Consensus 164 G~QlL~~~~Gg~ 175 (278)
+-.-.....|.+
T Consensus 84 ~Ta~~l~~~G~~ 95 (240)
T PRK09189 84 ATAEAARELGFR 95 (240)
T ss_pred HHHHHHHHcCCC
Confidence 665544455554
No 342
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=32.55 E-value=96 Score=30.53 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=33.4
Q ss_pred HHHHHHHHHHcCCeEEE-EeCCCChhhHHHhcc-cCCEEEEcCCCC
Q 023716 87 AASYVKFVESAGARVIP-LIYNEPEDVLFEKLE-LVNGVLYTGGWA 130 (278)
Q Consensus 87 ~~syv~~le~~Ga~~v~-i~~~~~~~~l~~~l~-~iDGlIl~GG~~ 130 (278)
+.+--++-..+|++++- +-++.+..+++++.. ..|-|||+||-|
T Consensus 86 aeAAk~AAlgAGA~V~~~~a~~l~~~~l~~I~~~~PDIILLaGGtD 131 (463)
T TIGR01319 86 AEAAKRAAHGAGAKIANVYAYDLNNKDIEAIEESNLDIILFAGGTD 131 (463)
T ss_pred HHHHHHHHhcCCcEEEEEEeecCCHHHHHHHhhcCCCEEEEeCCcC
Confidence 34455677789999986 677777777776553 689999999987
No 343
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=32.43 E-value=2.5e+02 Score=24.72 Aligned_cols=61 Identities=11% Similarity=0.093 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHcCCeEEEEeCC------CCh------hhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHH
Q 023716 86 IAASYVKFVESAGARVIPLIYN------EPE------DVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKIL 147 (278)
Q Consensus 86 i~~syv~~le~~Ga~~v~i~~~------~~~------~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al 147 (278)
++.-..+.+...|+.+.++.+. .+. ..+.+.++..||+||.-- .-+..+.+..+..++++-
T Consensus 45 la~~~~~~~~~~g~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~ADgvii~TP-EYn~sipg~LKNaiDwls 117 (219)
T TIGR02690 45 LAEEAARLLGCEGRETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSEGQVWCSP-ERHGAITGSQKDQIDWIP 117 (219)
T ss_pred HHHHHHHHHhhcCCEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCCEEEEeCC-ccccCcCHHHHHHHHhcc
Confidence 4444556666668887666321 111 224556678999998521 112223344556666554
No 344
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=32.39 E-value=3e+02 Score=24.32 Aligned_cols=68 Identities=7% Similarity=0.073 Sum_probs=35.2
Q ss_pred hhhhHHHHHHHHHHcCC-eEEEE-eCCCChhh----HHHhc-ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCC
Q 023716 83 ASYIAASYVKFVESAGA-RVIPL-IYNEPEDV----LFEKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDH 155 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga-~~v~i-~~~~~~~~----l~~~l-~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~ 155 (278)
...+.....+..++.|. .++.. +.+.+.+. +..++ +++||||+.+. + + ......++.+.+++
T Consensus 13 ~~~~~~gi~~~a~~~g~~~~i~~~~~~~d~~~q~~~i~~l~~~~vdgiIi~~~-~--~---~~~~~~l~~~~~~g----- 81 (302)
T TIGR02637 13 FEAANKGAEEAAKELGSVYIIYTGPTGTTAEGQIEVVNSLIAQKVDAIAISAN-D--P---DALVPALKKAMKRG----- 81 (302)
T ss_pred HHHHHHHHHHHHHHhCCeeEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCC-C--h---HHHHHHHHHHHHCC-----
Confidence 44455667778888884 34433 22222221 22222 47999999753 2 1 12224455555555
Q ss_pred CcEEEE
Q 023716 156 FPLYAH 161 (278)
Q Consensus 156 ~PVLGI 161 (278)
+||..+
T Consensus 82 iPvV~~ 87 (302)
T TIGR02637 82 IKVVTW 87 (302)
T ss_pred CEEEEe
Confidence 665543
No 345
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=32.23 E-value=3.3e+02 Score=23.45 Aligned_cols=59 Identities=24% Similarity=0.327 Sum_probs=35.3
Q ss_pred EEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcC
Q 023716 63 IGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTG 127 (278)
Q Consensus 63 IGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~G 127 (278)
||++....... .+.+ .....+.....+.+++.|..+.....+.. .......+||+|+.+
T Consensus 2 ~~~~~~~~~~~--~~~~-~~~~~~~~gi~~~~~~~g~~~~~~~~~~~---~~~~~~~vdgii~~~ 60 (270)
T cd01544 2 IAIVQWYSEEE--ELDD-PYYLSIRLGIEKRAQELGIELTKFFRDDD---LLEILEDVDGIIAIG 60 (270)
T ss_pred eEEEEeccccc--cccC-ccHHHHHHHHHHHHHHcCCEEEEEeccch---hHHhccCcCEEEEec
Confidence 77777643111 1111 22344455667788889998887765322 223457899999875
No 346
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=31.91 E-value=1.9e+02 Score=28.13 Aligned_cols=62 Identities=21% Similarity=0.205 Sum_probs=42.1
Q ss_pred HHHHHHHHcCCeEEEEeCCC---ChhhHHHhcc--cCCEEEEcCCCCCC--ccch-HHHHHHHHHHHHhc
Q 023716 89 SYVKFVESAGARVIPLIYNE---PEDVLFEKLE--LVNGVLYTGGWAKD--GLYY-AIVEKVFKKILEKN 150 (278)
Q Consensus 89 syv~~le~~Ga~~v~i~~~~---~~~~l~~~l~--~iDGlIl~GG~~~~--p~~~-~~~~~li~~al~~~ 150 (278)
.....++..|+++++||.|+ +.|.+++.++ ++..++++-..... ..+- ...++++++|-+.+
T Consensus 191 ~~~~~~~~~g~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~ 260 (459)
T COG1167 191 GALQALEALGARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYD 260 (459)
T ss_pred HHHHHHHHcCCcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcC
Confidence 35678999999999999986 3566666665 38899987765421 1222 23458888885544
No 347
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=31.83 E-value=90 Score=24.45 Aligned_cols=40 Identities=20% Similarity=0.207 Sum_probs=29.9
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCC
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGW 129 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~ 129 (278)
....+.|++ |..+.... ..+.+++.+.++.+|+++..++.
T Consensus 9 ~~~~~~l~~-~~~v~~~~-~~~~~~~~~~l~~~d~ii~~~~~ 48 (133)
T PF00389_consen 9 DEEIERLEE-GFEVEFCD-SPSEEELAERLKDADAIIVGSGT 48 (133)
T ss_dssp HHHHHHHHH-TSEEEEES-SSSHHHHHHHHTTESEEEESTTS
T ss_pred HHHHHHHHC-CceEEEeC-CCCHHHHHHHhCCCeEEEEcCCC
Confidence 345677877 77555555 56777888889999999987765
No 348
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=31.51 E-value=2.5e+02 Score=24.96 Aligned_cols=62 Identities=16% Similarity=0.102 Sum_probs=37.4
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCCC
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~ 129 (278)
..+||++....+ + .....+.....+.+++.|..++....+.+.+. +..+. ..+||+|+.+..
T Consensus 56 ~~~Igvi~~~~~-------~-~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~ 122 (327)
T PRK10423 56 TRTIGMLITAST-------N-PFYSELVRGVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTE 122 (327)
T ss_pred CCeEEEEeCCCC-------C-CcHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 368998864321 1 12344556677888889998877654433322 22222 369999998654
No 349
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=31.39 E-value=77 Score=28.91 Aligned_cols=42 Identities=26% Similarity=0.340 Sum_probs=31.3
Q ss_pred EEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHH
Q 023716 122 GVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTM 170 (278)
Q Consensus 122 GlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~ 170 (278)
||+.+||+. |-+......+++.+...+ .-|+|+..|+.=|..
T Consensus 4 ~Il~sGG~a--pG~Na~i~~~v~~a~~~g-----~~v~g~~~G~~GL~~ 45 (282)
T PF00365_consen 4 AILTSGGDA--PGMNAAIRGVVRYAIRRG-----WEVYGIRNGFEGLLN 45 (282)
T ss_dssp EEEEESS----TTHHHHHHHHHHHHHHTT-----SEEEEETTHHHHHHH
T ss_pred EEEecCCCc--hhhhHHHHHHHHHHHhcC-----CEEEEEEccCcccee
Confidence 567777765 566666678888888777 889999999987654
No 350
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=31.16 E-value=78 Score=28.49 Aligned_cols=79 Identities=14% Similarity=0.051 Sum_probs=47.7
Q ss_pred HHHHHHHHHcCCeEEEEeCCC----ChhhH---HHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEE
Q 023716 88 ASYVKFVESAGARVIPLIYNE----PEDVL---FEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYA 160 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~----~~~~l---~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLG 160 (278)
....+.|++.|+.++.+|.-. +...+ ...++..|.|||+...++ +.+++ .++. ....+.|+++
T Consensus 31 ~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~l~~l~~~d~iiftS~NAV--------~~~~~-~~~~-~~~~~~~~~A 100 (266)
T PRK08811 31 APLRRAVARHGGRLLALSPWRLQRLDTAQARDALRQALAAPIVVFTSPAAV--------RAAHR-LLPL-QRPARAHWLS 100 (266)
T ss_pred HHHHHHHHHCCCcEEEcCceeecCCCchhHHHHHhhcccCCEEEEECHHHH--------HHHHH-Hhcc-cCccCCeEEE
Confidence 568899999999999887631 11111 134568999999976543 12221 1111 1123478888
Q ss_pred EechHHHHHHHHhCcc
Q 023716 161 HCLGFELLTMIISKDK 176 (278)
Q Consensus 161 IClG~QlL~~~~Gg~~ 176 (278)
|..+-.--....|...
T Consensus 101 VG~~TA~aL~~~G~~~ 116 (266)
T PRK08811 101 VGEGTARALQACGIDE 116 (266)
T ss_pred ECHHHHHHHHHcCCCc
Confidence 8877766555556553
No 351
>PRK14057 epimerase; Provisional
Probab=31.14 E-value=2.3e+02 Score=25.65 Aligned_cols=39 Identities=18% Similarity=0.153 Sum_probs=29.0
Q ss_pred HHHHHHHHHcCCe----------EEEEeCCCChhhHHHhcccCCEEEEc
Q 023716 88 ASYVKFVESAGAR----------VIPLIYNEPEDVLFEKLELVNGVLYT 126 (278)
Q Consensus 88 ~syv~~le~~Ga~----------~v~i~~~~~~~~l~~~l~~iDGlIl~ 126 (278)
...++++++.|++ =+.+....+.+.+..+++.+|.|++.
T Consensus 113 ~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~vD~VLvM 161 (254)
T PRK14057 113 HHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLL 161 (254)
T ss_pred HHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHhCCEEEEE
Confidence 4567888888863 34555555778888899999999984
No 352
>PRK03670 competence damage-inducible protein A; Provisional
Probab=31.10 E-value=1.8e+02 Score=26.06 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=25.6
Q ss_pred HHHHHHHcCCeEEEEeCC-CChhhHHHh----cc-cCCEEEEcCCCC
Q 023716 90 YVKFVESAGARVIPLIYN-EPEDVLFEK----LE-LVNGVLYTGGWA 130 (278)
Q Consensus 90 yv~~le~~Ga~~v~i~~~-~~~~~l~~~----l~-~iDGlIl~GG~~ 130 (278)
..++++..|..+...... ++.+.+.+. ++ ..|-||++||-.
T Consensus 25 la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGGlG 71 (252)
T PRK03670 25 IAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVISGGLG 71 (252)
T ss_pred HHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEECCCcc
Confidence 346789999987654322 233444433 34 369999999854
No 353
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=30.62 E-value=62 Score=30.78 Aligned_cols=46 Identities=17% Similarity=0.044 Sum_probs=28.7
Q ss_pred hHHHhcccCCEEEEcC-CCCCCccchHHH-HHHHHHHHHhcCCCCCCcEEEEec
Q 023716 112 VLFEKLELVNGVLYTG-GWAKDGLYYAIV-EKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 112 ~l~~~l~~iDGlIl~G-G~~~~p~~~~~~-~~li~~al~~~~~g~~~PVLGICl 163 (278)
.+++.++++|- ||+| |........++. -.+.+.|.+.+ +|+++||-
T Consensus 277 ~le~~v~daDL-VITGEGr~D~Qs~~GK~pigVA~~Akk~~-----vPvIaiaG 324 (378)
T COG1929 277 NLEDAVKDADL-VITGEGRIDSQSLHGKTPIGVAKLAKKYG-----VPVIAIAG 324 (378)
T ss_pred CHHHhhccCCE-EEeCCCcccccccCCccchHHHHhhhhhC-----CCEEEEec
Confidence 35667788886 4555 544222222222 36667777777 99999993
No 354
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=30.37 E-value=1.5e+02 Score=25.71 Aligned_cols=92 Identities=13% Similarity=0.107 Sum_probs=56.2
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCCh--hhHHHhcccCCEEEEcCCCCCCccc
Q 023716 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE--DVLFEKLELVNGVLYTGGWAKDGLY 135 (278)
Q Consensus 58 ~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~--~~l~~~l~~iDGlIl~GG~~~~p~~ 135 (278)
...|+|.|+..... .. .....+.+.+.|.+.+.+.++.+. +.+..+-+....+++--|.-.++.-
T Consensus 6 ~~~~liaVlr~~~~-----------e~--a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~ 72 (204)
T TIGR01182 6 REAKIVPVIRIDDV-----------DD--ALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQ 72 (204)
T ss_pred hhCCEEEEEecCCH-----------HH--HHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHH
Confidence 45689999865421 11 245778999999999999987542 2233443445555555465443332
Q ss_pred hHH--------------HHHHHHHHHHhcCCCCCCcEEEEechHHH
Q 023716 136 YAI--------------VEKVFKKILEKNDAGDHFPLYAHCLGFEL 167 (278)
Q Consensus 136 ~~~--------------~~~li~~al~~~~~g~~~PVLGIClG~Ql 167 (278)
.+. ..++++.+.+.+ +|++-=|.=---
T Consensus 73 a~~a~~aGA~FivsP~~~~~v~~~~~~~~-----i~~iPG~~TptE 113 (204)
T TIGR01182 73 LRQAVDAGAQFIVSPGLTPELAKHAQDHG-----IPIIPGVATPSE 113 (204)
T ss_pred HHHHHHcCCCEEECCCCCHHHHHHHHHcC-----CcEECCCCCHHH
Confidence 221 257888888888 887754443333
No 355
>PRK03673 hypothetical protein; Provisional
Probab=30.20 E-value=2.5e+02 Score=27.03 Aligned_cols=39 Identities=15% Similarity=0.220 Sum_probs=26.2
Q ss_pred HHHHHcCCeEEEEe-CCCChhhHHH----hcccCCEEEEcCCCC
Q 023716 92 KFVESAGARVIPLI-YNEPEDVLFE----KLELVNGVLYTGGWA 130 (278)
Q Consensus 92 ~~le~~Ga~~v~i~-~~~~~~~l~~----~l~~iDGlIl~GG~~ 130 (278)
+.+...|..+.... ..++.+.+.+ .++..|-||++||-.
T Consensus 28 ~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~~~~DlVI~tGGlG 71 (396)
T PRK03673 28 DFFFHQGLPLSRRNTVGDNLDALVAILRERSQHADVLIVNGGLG 71 (396)
T ss_pred HHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhccCCEEEEcCCCC
Confidence 56889999876443 2234444444 445789999999854
No 356
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=30.01 E-value=79 Score=29.22 Aligned_cols=41 Identities=27% Similarity=0.402 Sum_probs=30.8
Q ss_pred EEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHH
Q 023716 122 GVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLT 169 (278)
Q Consensus 122 GlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~ 169 (278)
||+.+||+. |-.....+.+++.+.+.+ .-|+|+..|++=|-
T Consensus 3 aIltsGG~a--pG~Na~i~~vv~~a~~~g-----~~v~G~~~G~~GL~ 43 (301)
T TIGR02482 3 GILTSGGDA--PGMNAAIRAVVRTAIYHG-----FEVYGIRRGYKGLI 43 (301)
T ss_pred EEEccCCCc--HHHHHHHHHHHHHHHHCC-----CEEEEEecCHHHhc
Confidence 566677764 555556677888887766 78999999998663
No 357
>PRK07667 uridine kinase; Provisional
Probab=29.76 E-value=1.4e+02 Score=25.18 Aligned_cols=40 Identities=13% Similarity=0.134 Sum_probs=30.7
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCC
Q 023716 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN 107 (278)
Q Consensus 58 ~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~ 107 (278)
..+.+|||.+.++. +.+.++..+.+.+.+.|..+..+..+
T Consensus 15 ~~~~iIgI~G~~gs----------GKStla~~L~~~l~~~~~~~~~i~~D 54 (193)
T PRK07667 15 ENRFILGIDGLSRS----------GKTTFVANLKENMKQEGIPFHIFHID 54 (193)
T ss_pred CCCEEEEEECCCCC----------CHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 35689999988754 36777888888888888887777655
No 358
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=29.52 E-value=2.7e+02 Score=24.66 Aligned_cols=39 Identities=13% Similarity=0.163 Sum_probs=29.8
Q ss_pred HHHHHHHHHcCC--eE-EEEeCCCChhhHHHhcccCCEEEEc
Q 023716 88 ASYVKFVESAGA--RV-IPLIYNEPEDVLFEKLELVNGVLYT 126 (278)
Q Consensus 88 ~syv~~le~~Ga--~~-v~i~~~~~~~~l~~~l~~iDGlIl~ 126 (278)
...++++++.|. ++ +.|....+.+.+..+++.+|-|++.
T Consensus 106 ~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiM 147 (228)
T PRK08091 106 ALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQIL 147 (228)
T ss_pred HHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEE
Confidence 457788999998 65 4455555678888899999999983
No 359
>PRK08211 putative dehydratase; Provisional
Probab=29.48 E-value=4.2e+02 Score=27.35 Aligned_cols=73 Identities=8% Similarity=0.011 Sum_probs=42.6
Q ss_pred CCcEEEEeCCCCCCC--CC------CCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCC-----------------ChhhH
Q 023716 59 YRPVIGIVTHPGDGA--SG------RLNNATNASYIAASYVKFVESAGARVIPLIYNE-----------------PEDVL 113 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~--~~------~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~-----------------~~~~l 113 (278)
.||.|||.+...+-. .+ -........-+.....+-++++|+.++.+.... +++.+
T Consensus 60 ~kP~IgI~nt~~~~~~~~~~~~~~~~~pgh~hL~~l~~~vk~gi~~aGG~P~ef~ti~vcDGit~G~~GM~ySL~sRelI 139 (655)
T PRK08211 60 LGKQFLILSTQGGIRAADGTPIALGYHTGHWEVGLLMKAAAEEIKRNGGIPFAGYVSDPCDGRTQGTTGMFDSLPYRNDA 139 (655)
T ss_pred CCCEEEEEeCCccccccccccccCCCcCCchhHHHHHHHHHHHHHHcCCeeEEeCCCCCcCccccCCccceechhhHHHH
Confidence 799999998876300 00 000112233345556677888999988775433 12222
Q ss_pred ----HHhcc---cCCEEEEcCCCCC
Q 023716 114 ----FEKLE---LVNGVLYTGGWAK 131 (278)
Q Consensus 114 ----~~~l~---~iDGlIl~GG~~~ 131 (278)
+.... .+||+|+.+|-|+
T Consensus 140 A~siE~~~~a~~~~DGvV~l~~CDK 164 (655)
T PRK08211 140 AIVFRRLIRSLPTRKAVIGVATCDK 164 (655)
T ss_pred HHHHHHHHcccCcCCeEEEeCcCCC
Confidence 22233 2799999999885
No 360
>PLN02979 glycolate oxidase
Probab=29.34 E-value=3.9e+02 Score=25.55 Aligned_cols=84 Identities=10% Similarity=0.141 Sum_probs=48.1
Q ss_pred HHHHHHHHcCCeEEEEeCCCChhhHHHhc-ccCCEEEEcCCCCCCccch-HHHHHHHHHHHHhcCCCCCCcEE---EEec
Q 023716 89 SYVKFVESAGARVIPLIYNEPEDVLFEKL-ELVNGVLYTGGWAKDGLYY-AIVEKVFKKILEKNDAGDHFPLY---AHCL 163 (278)
Q Consensus 89 syv~~le~~Ga~~v~i~~~~~~~~l~~~l-~~iDGlIl~GG~~~~p~~~-~~~~~li~~al~~~~~g~~~PVL---GICl 163 (278)
..++||++.=-.|+++.-..+.++..... ..+|||+++|.+.-...+. .+..-+.+ +.+. .+.++||+ ||.+
T Consensus 213 ~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~e-i~~~--~~~~~~Vi~dGGIr~ 289 (366)
T PLN02979 213 KDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEE-VVKA--TQGRIPVFLDGGVRR 289 (366)
T ss_pred HHHHHHHhccCCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHH-HHHH--hCCCCeEEEeCCcCc
Confidence 45789987555566665444555555444 4799999998443211111 11222222 2111 12338888 8999
Q ss_pred hHHHH-HHHHhCc
Q 023716 164 GFELL-TMIISKD 175 (278)
Q Consensus 164 G~QlL-~~~~Gg~ 175 (278)
|..++ +.++|.+
T Consensus 290 G~Di~KALALGAd 302 (366)
T PLN02979 290 GTDVFKALALGAS 302 (366)
T ss_pred HHHHHHHHHcCCC
Confidence 99988 4567776
No 361
>PRK09492 treR trehalose repressor; Provisional
Probab=29.17 E-value=2.6e+02 Score=24.83 Aligned_cols=60 Identities=18% Similarity=0.166 Sum_probs=35.7
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHH---Hhc--ccCCEEEEcCC
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLF---EKL--ELVNGVLYTGG 128 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~---~~l--~~iDGlIl~GG 128 (278)
.+||++....+ + .....+.....+.+++.|..++......+.+... +.+ ..+||+|+.+.
T Consensus 63 ~~Ig~i~~~~~-------~-~~~~~~~~~i~~~~~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 127 (315)
T PRK09492 63 KVVGIIVSRLD-------S-LSENQAVRTMLPAFYEQGYDPIIMESQFSPEKVNEHLGVLKRRNVDGVILFGF 127 (315)
T ss_pred CeEEEEecCCc-------C-cccHHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHhcCCCEEEEeCC
Confidence 58999864211 1 1233445667788888999887765543332211 122 36999999763
No 362
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=28.68 E-value=1.5e+02 Score=25.92 Aligned_cols=100 Identities=17% Similarity=0.145 Sum_probs=60.5
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCCh--hhHHHhcccCCEEEEcCCCCCCccc
Q 023716 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE--DVLFEKLELVNGVLYTGGWAKDGLY 135 (278)
Q Consensus 58 ~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~--~~l~~~l~~iDGlIl~GG~~~~p~~ 135 (278)
...++|.|+-.... .. +....+.+.+.|.+.+.+.++.+. +.+..+-+.+..+++--|.-.++.-
T Consensus 13 ~~~~~iaV~r~~~~-----------~~--a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~ 79 (212)
T PRK05718 13 RAGPVVPVIVINKL-----------ED--AVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQ 79 (212)
T ss_pred HHCCEEEEEEcCCH-----------HH--HHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHH
Confidence 45689999865421 11 245778999999999999877542 2333333344445444444333221
Q ss_pred hHH--------------HHHHHHHHHHhcCCCCCCcEE-EEechHHHHHH-HHhCc
Q 023716 136 YAI--------------VEKVFKKILEKNDAGDHFPLY-AHCLGFELLTM-IISKD 175 (278)
Q Consensus 136 ~~~--------------~~~li~~al~~~~~g~~~PVL-GIClG~QlL~~-~~Gg~ 175 (278)
.+. ..++++.+.+.+ +|++ |++-=-++... .+|-+
T Consensus 80 a~~a~~aGA~FivsP~~~~~vi~~a~~~~-----i~~iPG~~TptEi~~a~~~Ga~ 130 (212)
T PRK05718 80 LAQAIEAGAQFIVSPGLTPPLLKAAQEGP-----IPLIPGVSTPSELMLGMELGLR 130 (212)
T ss_pred HHHHHHcCCCEEECCCCCHHHHHHHHHcC-----CCEeCCCCCHHHHHHHHHCCCC
Confidence 111 247899999888 9999 88866665533 24444
No 363
>PRK06851 hypothetical protein; Provisional
Probab=28.68 E-value=1.7e+02 Score=27.90 Aligned_cols=51 Identities=16% Similarity=0.158 Sum_probs=36.0
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcC
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTG 127 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~G 127 (278)
+.++-|.+.|+. +.+.+.....+.+.+.|..+..+....++ +.+|||+||+
T Consensus 30 ~~~~il~G~pGt----------GKStl~~~i~~~~~~~g~~Ve~~~~~~d~-------~slDgviip~ 80 (367)
T PRK06851 30 NRIFILKGGPGT----------GKSTLMKKIGEEFLEKGYDVEFLHCSSDN-------DSLDGVIIPE 80 (367)
T ss_pred ceEEEEECCCCC----------CHHHHHHHHHHHHHHcCCeEEEEEcCCCC-------CceeeEEecC
Confidence 456667766653 35666677888888889888877654443 3689999988
No 364
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=28.44 E-value=2.6e+02 Score=27.44 Aligned_cols=81 Identities=17% Similarity=0.225 Sum_probs=45.3
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHH--cCCeEEEEeCCCC----hhhHH------HhcccCCEEEEc-CC
Q 023716 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVES--AGARVIPLIYNEP----EDVLF------EKLELVNGVLYT-GG 128 (278)
Q Consensus 62 vIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~--~Ga~~v~i~~~~~----~~~l~------~~l~~iDGlIl~-GG 128 (278)
.|||.|.|... .-...++-+.+ -...++++|.... .+++. +....+|-||+. ||
T Consensus 137 ~IGVITS~tgA-------------airDIl~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGG 203 (440)
T COG1570 137 KIGVITSPTGA-------------ALRDILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGG 203 (440)
T ss_pred eEEEEcCCchH-------------HHHHHHHHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCc
Confidence 79999988421 12455666654 3466666665431 12222 233458988885 44
Q ss_pred CCCCccchHHHHHHHHHHHHhcCCCCCCcEEE
Q 023716 129 WAKDGLYYAIVEKVFKKILEKNDAGDHFPLYA 160 (278)
Q Consensus 129 ~~~~p~~~~~~~~li~~al~~~~~g~~~PVLG 160 (278)
+++...|.=..+.+.+.+.+.. +||.-
T Consensus 204 GSiEDLW~FNdE~vaRAi~~s~-----iPvIS 230 (440)
T COG1570 204 GSIEDLWAFNDEIVARAIAASR-----IPVIS 230 (440)
T ss_pred chHHHHhccChHHHHHHHHhCC-----CCeEe
Confidence 4444333222345666666677 89863
No 365
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=28.25 E-value=1e+02 Score=27.20 Aligned_cols=84 Identities=20% Similarity=0.175 Sum_probs=52.2
Q ss_pred HHHHHHHHHcCCeEEEEeCCCCh-----hhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhc-CCCCCCcEEEE
Q 023716 88 ASYVKFVESAGARVIPLIYNEPE-----DVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKN-DAGDHFPLYAH 161 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~-----~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~-~~g~~~PVLGI 161 (278)
..++..++..|+.++.+|.-... +.....+...|.|+++-..++ +.+++.....+ +.-...++++|
T Consensus 14 ~~~~~~l~~~G~~~~~~P~i~~~~~~~l~~~l~~l~~~d~vvfTS~~av--------~~~~~~l~~~~~~~~~~~~i~aV 85 (248)
T COG1587 14 EELAALLRKAGAEPLELPLIEIEPLPDLEVALEDLDSADWVVFTSPNAV--------RFFFEALKEQGLDALKNKKIAAV 85 (248)
T ss_pred HHHHHHHHhCCCcceeecceeeecchhHHHHHhccccCCEEEEECHHHH--------HHHHHHHHhhcccccccCeEEEE
Confidence 56889999999999988766422 222334455789999976543 22232222221 01112789988
Q ss_pred echHHHHHHHHhCccccc
Q 023716 162 CLGFELLTMIISKDKNIL 179 (278)
Q Consensus 162 ClG~QlL~~~~Gg~~~il 179 (278)
...---....+|.+.++.
T Consensus 86 G~~Ta~~l~~~G~~~~~~ 103 (248)
T COG1587 86 GEKTAEALRKLGIKVDFI 103 (248)
T ss_pred cHHHHHHHHHhCCCCCcC
Confidence 888777777778775443
No 366
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=28.24 E-value=2e+02 Score=24.55 Aligned_cols=46 Identities=20% Similarity=0.137 Sum_probs=30.0
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCC
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGG 128 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG 128 (278)
..-+.....+.+++.|..+++...+.+.+. +.... .++||+|+.+.
T Consensus 14 ~~~i~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (260)
T cd06286 14 FSQLVDGIEKAALKHGYKVVLLQTNYDKEKELEYLELLKTKQVDGLILCSR 64 (260)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 344556677788888999888766544432 22222 36999999765
No 367
>PLN02417 dihydrodipicolinate synthase
Probab=28.17 E-value=1.8e+02 Score=26.24 Aligned_cols=45 Identities=9% Similarity=0.022 Sum_probs=29.2
Q ss_pred cCCEEEEcCCCCCCccch-HHHHHHHHHHHHhcCCCCCCcEEEEechH
Q 023716 119 LVNGVLYTGGWAKDGLYY-AIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (278)
Q Consensus 119 ~iDGlIl~GG~~~~p~~~-~~~~~li~~al~~~~~g~~~PVLGIClG~ 165 (278)
.+|||++.|..+-.+.+. ++.+++++.+.+.. ...+||++-+-+.
T Consensus 35 Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~--~~~~pvi~gv~~~ 80 (280)
T PLN02417 35 GAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCF--GGKIKVIGNTGSN 80 (280)
T ss_pred CCCEEEECccCcchhhCCHHHHHHHHHHHHHHh--CCCCcEEEECCCc
Confidence 689999998655333333 34457888877653 2358998766553
No 368
>PF13941 MutL: MutL protein
Probab=27.92 E-value=2.4e+02 Score=27.78 Aligned_cols=44 Identities=30% Similarity=0.280 Sum_probs=31.3
Q ss_pred HHHHHHHHHHcCCeEEEE-eCCCChhhHHHhc-ccCCEEEEcCCCC
Q 023716 87 AASYVKFVESAGARVIPL-IYNEPEDVLFEKL-ELVNGVLYTGGWA 130 (278)
Q Consensus 87 ~~syv~~le~~Ga~~v~i-~~~~~~~~l~~~l-~~iDGlIl~GG~~ 130 (278)
+.+--++...+|++++-+ .+.-+.++++++. .+.|-|||.||-+
T Consensus 90 a~AAk~AAlgAGA~V~~v~s~~l~~~~l~~i~~~~PDiILLaGGtD 135 (457)
T PF13941_consen 90 AEAAKRAALGAGARVLQVYSYELTEEDLEEIREIRPDIILLAGGTD 135 (457)
T ss_pred HHHHHHHHhcCCcEEEEEeccCCCHHHHHHHhccCCCEEEEeCCcc
Confidence 444556677799998765 4445566666654 3689999999987
No 369
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.90 E-value=2.3e+02 Score=24.23 Aligned_cols=47 Identities=13% Similarity=-0.033 Sum_probs=29.7
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCCChhhH----HHhc-ccCCEEEEcCCC
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNEPEDVL----FEKL-ELVNGVLYTGGW 129 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l----~~~l-~~iDGlIl~GG~ 129 (278)
...+.....+.+++.|..++....+.+.+.. ..+. ..+||+|+.+..
T Consensus 14 ~~~~~~gi~~~~~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~ 65 (265)
T cd06290 14 YGRILKGMERGLNGSGYSPIIATGHWNQSRELEALELLKSRRVDALILLGGD 65 (265)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 3344455667788899988887655444322 2222 359999998653
No 370
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=27.87 E-value=1.5e+02 Score=25.64 Aligned_cols=91 Identities=13% Similarity=0.169 Sum_probs=53.8
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCCh--hhHHHhcccCCEEEEcCCCCCCccchH
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE--DVLFEKLELVNGVLYTGGWAKDGLYYA 137 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~--~~l~~~l~~iDGlIl~GG~~~~p~~~~ 137 (278)
.++|.|+..... .. .....+++.+.|.+.+.+.++.+. +.++.+.+....+++-=|.-.+....+
T Consensus 8 ~~iiaVir~~~~-----------~~--a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~ 74 (196)
T PF01081_consen 8 NKIIAVIRGDDP-----------ED--AVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEFPDLLVGAGTVLTAEQAE 74 (196)
T ss_dssp HSEEEEETTSSG-----------GG--HHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHHTTSEEEEES--SHHHHH
T ss_pred CCEEEEEEcCCH-----------HH--HHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHCCCCeeEEEeccCHHHHH
Confidence 478888875421 11 356889999999999999987642 333333334555565445544433222
Q ss_pred H--------------HHHHHHHHHHhcCCCCCCcEEEEec-hHHHH
Q 023716 138 I--------------VEKVFKKILEKNDAGDHFPLYAHCL-GFELL 168 (278)
Q Consensus 138 ~--------------~~~li~~al~~~~~g~~~PVLGICl-G~QlL 168 (278)
. .+++++++.+.+ +|++==|. =-+++
T Consensus 75 ~a~~aGA~FivSP~~~~~v~~~~~~~~-----i~~iPG~~TptEi~ 115 (196)
T PF01081_consen 75 AAIAAGAQFIVSPGFDPEVIEYAREYG-----IPYIPGVMTPTEIM 115 (196)
T ss_dssp HHHHHT-SEEEESS--HHHHHHHHHHT-----SEEEEEESSHHHHH
T ss_pred HHHHcCCCEEECCCCCHHHHHHHHHcC-----CcccCCcCCHHHHH
Confidence 1 358999999999 99885444 44443
No 371
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=27.64 E-value=86 Score=24.37 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=14.4
Q ss_pred HHHHHHHHHcCCeEEEEeCCC
Q 023716 88 ASYVKFVESAGARVIPLIYNE 108 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~ 108 (278)
...++.+.+.|..+.++....
T Consensus 17 ~~v~~~l~~~G~~v~~Vnp~~ 37 (116)
T PF13380_consen 17 YRVLRNLKAAGYEVYPVNPKG 37 (116)
T ss_dssp HHHHHHHHHTT-EEEEESTTC
T ss_pred HHHHHHHHhCCCEEEEECCCc
Confidence 346677878998888886554
No 372
>PRK08227 autoinducer 2 aldolase; Validated
Probab=27.59 E-value=3.7e+02 Score=24.40 Aligned_cols=79 Identities=14% Similarity=0.172 Sum_probs=45.7
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccC-CEEEEcCCCCCCccchH
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELV-NGVLYTGGWAKDGLYYA 137 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~i-DGlIl~GG~~~~p~~~~ 137 (278)
.-|+|++. |.... .. ....+|+ --.+.-.+.||.++-++|.. +.+.+..+.+ --||+.||+-.+ . .
T Consensus 140 G~Plla~~--prG~~---~~--~~~~~ia-~aaRiaaELGADiVK~~y~~--~~f~~vv~a~~vPVviaGG~k~~-~--~ 206 (264)
T PRK08227 140 GMPVMAVT--AVGKD---MV--RDARYFS-LATRIAAEMGAQIIKTYYVE--EGFERITAGCPVPIVIAGGKKLP-E--R 206 (264)
T ss_pred CCcEEEEe--cCCCC---cC--chHHHHH-HHHHHHHHHcCCEEecCCCH--HHHHHHHHcCCCcEEEeCCCCCC-H--H
Confidence 46999855 32111 11 1233543 34556677999999999964 4555555443 468999998642 1 2
Q ss_pred HHHHHHHHHHHhc
Q 023716 138 IVEKVFKKILEKN 150 (278)
Q Consensus 138 ~~~~li~~al~~~ 150 (278)
+.-..++.+++.+
T Consensus 207 ~~L~~v~~ai~aG 219 (264)
T PRK08227 207 DALEMCYQAIDEG 219 (264)
T ss_pred HHHHHHHHHHHcC
Confidence 2234555566655
No 373
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=27.46 E-value=3.2e+02 Score=21.80 Aligned_cols=61 Identities=13% Similarity=-0.039 Sum_probs=39.5
Q ss_pred HHHHH-HHHHHcCCeEEEEeCCCChhhHHHhc--ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhc
Q 023716 87 AASYV-KFVESAGARVIPLIYNEPEDVLFEKL--ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKN 150 (278)
Q Consensus 87 ~~syv-~~le~~Ga~~v~i~~~~~~~~l~~~l--~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~ 150 (278)
.+.++ .+|+.+|..++-+..+.++++..+.. .++|.+.+++=. ..+....+.+++...+++
T Consensus 18 g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~---~~~~~~~~~~~~~L~~~g 81 (132)
T TIGR00640 18 GAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLA---GGHLTLVPALRKELDKLG 81 (132)
T ss_pred HHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCch---hhhHHHHHHHHHHHHhcC
Confidence 34444 58899999999998777766554432 468888888643 234444556666655544
No 374
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=27.42 E-value=2.6e+02 Score=25.44 Aligned_cols=36 Identities=25% Similarity=0.292 Sum_probs=27.7
Q ss_pred HHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcC
Q 023716 89 SYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTG 127 (278)
Q Consensus 89 syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~G 127 (278)
+|...++..|.+++.++ +.+.+.+.++..+.++++-
T Consensus 98 ~~~~~~~~~g~~~~~~~---d~~~l~~~~~~~~~v~i~~ 133 (330)
T TIGR01140 98 EYARAWRAAGHEVVELP---DLDRLPAALEELDVLVLCN 133 (330)
T ss_pred HHHHHHHHcCCEEEEeC---CHHHHHhhcccCCEEEEeC
Confidence 46677889999998887 5666777777778777754
No 375
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=27.40 E-value=2.2e+02 Score=27.83 Aligned_cols=66 Identities=20% Similarity=0.230 Sum_probs=41.2
Q ss_pred HHHHHHHHcCCeEEEEeCC--------------CChhhHHHhcc-----cCCEEEEc------CCCCCCccchHHHHHHH
Q 023716 89 SYVKFVESAGARVIPLIYN--------------EPEDVLFEKLE-----LVNGVLYT------GGWAKDGLYYAIVEKVF 143 (278)
Q Consensus 89 syv~~le~~Ga~~v~i~~~--------------~~~~~l~~~l~-----~iDGlIl~------GG~~~~p~~~~~~~~li 143 (278)
+|...++.+|++++.++.+ -+.+.+++.+. +...|++. ||...+ ....+.+.
T Consensus 128 ~~~~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s---~~~l~~I~ 204 (460)
T PRK13238 128 TTRAHIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVS---MANLRAVY 204 (460)
T ss_pred chHHHHHHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCC---HHHHHHHH
Confidence 4556788899999988764 23455666554 34566663 443322 23445777
Q ss_pred HHHHHhcCCCCCCcEEEEe
Q 023716 144 KKILEKNDAGDHFPLYAHC 162 (278)
Q Consensus 144 ~~al~~~~~g~~~PVLGIC 162 (278)
+.|.+.+ ++++-=+
T Consensus 205 ~ia~~~g-----i~li~Da 218 (460)
T PRK13238 205 EIAKKYG-----IPVVIDA 218 (460)
T ss_pred HHHHHcC-----CEEEEEC
Confidence 7777777 7776543
No 376
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=27.18 E-value=67 Score=30.23 Aligned_cols=56 Identities=13% Similarity=0.220 Sum_probs=34.7
Q ss_pred HHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEE
Q 023716 90 YVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (278)
Q Consensus 90 yv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGI 161 (278)
.++.++.+|....++. ...+.+.+..+|.||=.||.+. +.-.. .++++++ +||+||
T Consensus 80 ~~~~l~k~giesklv~----R~~lsq~i~waD~VisvGGDGT---fL~Aa----srv~~~~-----~PViGv 135 (395)
T KOG4180|consen 80 CQEELSKAGIESKLVS----RNDLSQPIRWADMVISVGGDGT---FLLAA----SRVIDDS-----KPVIGV 135 (395)
T ss_pred HHHHHhhCCcceeeee----hhhccCcCchhhEEEEecCccc---eeehh----hhhhccC-----Cceeee
Confidence 4455667888766553 3344455778999998888652 11111 1144556 999998
No 377
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=27.12 E-value=1.4e+02 Score=26.89 Aligned_cols=68 Identities=15% Similarity=0.124 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChh---hHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEech
Q 023716 88 ASYVKFVESAGARVIPLIYNEPED---VLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~---~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG 164 (278)
..+.+..++.|..++.++.....+ .+..+.++.|+++++.... .......+++.+.+.+ +|++|....
T Consensus 150 ~~~~~~a~~~g~~l~~~~v~~~~~~~~~~~~l~~~~da~~~~~~~~----~~~~~~~i~~~~~~~~-----iPv~~~~~~ 220 (294)
T PF04392_consen 150 EQLRKAAKKLGIELVEIPVPSSEDLEQALEALAEKVDALYLLPDNL----VDSNFEAILQLANEAK-----IPVFGSSDF 220 (294)
T ss_dssp HHHHHHHHHTT-EEEEEEESSGGGHHHHHHHHCTT-SEEEE-S-HH----HHHTHHHHHHHCCCTT-------EEESSHH
T ss_pred HHHHHHHHHcCCEEEEEecCcHhHHHHHHHHhhccCCEEEEECCcc----hHhHHHHHHHHHHhcC-----CCEEECCHH
Confidence 445566677899988777654332 2233446789999874432 2222234555555555 999997643
No 378
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=27.09 E-value=3.9e+02 Score=23.21 Aligned_cols=45 Identities=16% Similarity=0.087 Sum_probs=27.4
Q ss_pred hhhHHHHHHHHHHcCCeEEEEeCCC----Chhh----HHHhc-ccCCEEEEcCC
Q 023716 84 SYIAASYVKFVESAGARVIPLIYNE----PEDV----LFEKL-ELVNGVLYTGG 128 (278)
Q Consensus 84 ~yi~~syv~~le~~Ga~~v~i~~~~----~~~~----l~~~l-~~iDGlIl~GG 128 (278)
.-+.....+.+++.|..+++.+++. +.+. +..++ .++||||+.+.
T Consensus 16 ~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIv~~~ 69 (280)
T cd06303 16 VRNIASFTARLEELNIPYELTQFSSRPGIDHRLQSQQLNEALQSKPDYLIFTLD 69 (280)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeccCcccCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3345567778888998887764321 1111 12222 47999999864
No 379
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=27.06 E-value=2.3e+02 Score=26.02 Aligned_cols=44 Identities=20% Similarity=0.233 Sum_probs=29.9
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCC--h-hhHHHhc-ccCCEEEEcCCCC
Q 023716 87 AASYVKFVESAGARVIPLIYNEP--E-DVLFEKL-ELVNGVLYTGGWA 130 (278)
Q Consensus 87 ~~syv~~le~~Ga~~v~i~~~~~--~-~~l~~~l-~~iDGlIl~GG~~ 130 (278)
.....+.|++.|........... . +..++.. +.+|.||..||..
T Consensus 22 ~~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDG 69 (301)
T COG1597 22 LREVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDG 69 (301)
T ss_pred HHHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcc
Confidence 45678899999998887765543 1 1222222 3689999999976
No 380
>PLN02765 pyruvate kinase
Probab=26.84 E-value=82 Score=31.53 Aligned_cols=81 Identities=15% Similarity=0.179 Sum_probs=50.4
Q ss_pred CchhhhHHHHH----------HHHHHcCC-eEEEEe-C--CCChhhHHHhcccCCEEEEcCCCC-C--Cc-cchHHHHHH
Q 023716 81 TNASYIAASYV----------KFVESAGA-RVIPLI-Y--NEPEDVLFEKLELVNGVLYTGGWA-K--DG-LYYAIVEKV 142 (278)
Q Consensus 81 ~~~~yi~~syv----------~~le~~Ga-~~v~i~-~--~~~~~~l~~~l~~iDGlIl~GG~~-~--~p-~~~~~~~~l 142 (278)
.+.+||+.||| +.+.+.|. .+-+|. . .+..++++++++..|||.+.=|.. + .. ......+.+
T Consensus 219 ~~vD~ia~SFVr~a~DI~~~r~~l~~~g~~~~~IiaKIE~~~av~nl~eIi~~sDgIMVARGDLGvEip~e~vp~~QK~i 298 (526)
T PLN02765 219 NKIDFLSLSYTRHAEDVREAREFLSSLGLSQTQIFAKIENVEGLTHFDEILQEADGIILSRGNLGIDLPPEKVFLFQKAA 298 (526)
T ss_pred cCCCEEEECCCCCHHHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHHHHHhcCEEEEecCccccccCHHHhHHHHHHH
Confidence 34566666665 34455564 332332 1 123467888889999999998865 2 11 112234688
Q ss_pred HHHHHHhcCCCCCCcEEEEechHHHHHH
Q 023716 143 FKKILEKNDAGDHFPLYAHCLGFELLTM 170 (278)
Q Consensus 143 i~~al~~~~~g~~~PVLGIClG~QlL~~ 170 (278)
++.|.+.+ +|+. . -|+|-.
T Consensus 299 I~~c~~~g-----KPVI--~--TQmLeS 317 (526)
T PLN02765 299 LYKCNMAG-----KPAV--V--TRVVDS 317 (526)
T ss_pred HHHHHHhC-----CCeE--E--ehhhhH
Confidence 88888888 9996 3 688853
No 381
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=26.83 E-value=2.1e+02 Score=25.32 Aligned_cols=39 Identities=21% Similarity=0.270 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCCeE-EEEeCCCChhhHHHhcccCCEEEEc
Q 023716 88 ASYVKFVESAGARV-IPLIYNEPEDVLFEKLELVNGVLYT 126 (278)
Q Consensus 88 ~syv~~le~~Ga~~-v~i~~~~~~~~l~~~l~~iDGlIl~ 126 (278)
...++.+++.|+++ +.+.+..+.+.+..+++.+|.|++.
T Consensus 99 ~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllM 138 (220)
T COG0036 99 HRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLM 138 (220)
T ss_pred HHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEE
Confidence 44678888889887 4455555668888899999999984
No 382
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=26.81 E-value=82 Score=27.93 Aligned_cols=46 Identities=11% Similarity=0.153 Sum_probs=31.1
Q ss_pred ccCCEEEEcCCCCCCccchHHHHHHHHHHHH-hcCCCCCCcEEEEechHHHHHHHHhCcccc
Q 023716 118 ELVNGVLYTGGWAKDGLYYAIVEKVFKKILE-KNDAGDHFPLYAHCLGFELLTMIISKDKNI 178 (278)
Q Consensus 118 ~~iDGlIl~GG~~~~p~~~~~~~~li~~al~-~~~~g~~~PVLGIClG~QlL~~~~Gg~~~i 178 (278)
+.+|++++.==.| | .+.++.+ .. +|+.|||.-.-+.+...|.+..+
T Consensus 68 ~GvdaiiIaCf~D--P--------gl~~~Re~~~-----~PviGi~eAsv~~A~~vgrrfsV 114 (230)
T COG4126 68 QGVDAIIIACFSD--P--------GLAAARERAA-----IPVIGICEASVLAALFVGRRFSV 114 (230)
T ss_pred cCCcEEEEEecCC--h--------HHHHHHHHhC-----CCceehhHHHHHHHHHhcceEEE
Confidence 3689998863222 2 2233333 24 99999999999999988887433
No 383
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=26.74 E-value=61 Score=26.51 Aligned_cols=54 Identities=22% Similarity=0.285 Sum_probs=37.6
Q ss_pred HHHHHHHcCCeEEEEeCCC----------ChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHH
Q 023716 90 YVKFVESAGARVIPLIYNE----------PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKIL 147 (278)
Q Consensus 90 yv~~le~~Ga~~v~i~~~~----------~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al 147 (278)
+++.+++.+.++.++-.+. ..+.....+..+|.+++||..-++.. ..++++.+.
T Consensus 23 ~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGsTlvN~T----i~~iL~~~~ 86 (147)
T PF04016_consen 23 LVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGSTLVNGT----IDDILELAR 86 (147)
T ss_dssp CHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECHHCCTTT----HHHHHHHTT
T ss_pred HHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEeeeeecCC----HHHHHHhCc
Confidence 5677777888888885554 23456778999999999998775533 345666554
No 384
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.73 E-value=1.7e+02 Score=24.78 Aligned_cols=53 Identities=17% Similarity=0.294 Sum_probs=35.4
Q ss_pred ccCCEEEEcCCCCC--CccchH----------HHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCc
Q 023716 118 ELVNGVLYTGGWAK--DGLYYA----------IVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKD 175 (278)
Q Consensus 118 ~~iDGlIl~GG~~~--~p~~~~----------~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~ 175 (278)
+.+|++|+|||..- +-.-+. ....+.+..-+.. +|+==||-.--++..++|--
T Consensus 84 e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~ag-----KP~G~iCIaP~m~pki~g~~ 148 (217)
T COG3155 84 EELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAG-----KPLGFMCIAPAMLPKIFGFP 148 (217)
T ss_pred HhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhC-----CCceEEEecHHHHHHHcCCc
Confidence 35799999999762 111110 1124444444566 99999999999999988764
No 385
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=26.58 E-value=38 Score=27.97 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=23.2
Q ss_pred CCEEEEcCCCCCC--ccchHHHHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 120 VNGVLYTGGWAKD--GLYYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 120 iDGlIl~GG~~~~--p~~~~~~~~li~~al~~~~~g~~~PVLGICl 163 (278)
+|-|+|.||-++. +.-.+..+.++++... ..|.|||.
T Consensus 81 ~D~vVlmGGLAMP~~~v~~e~v~~li~ki~~-------~~iiGiCF 119 (147)
T PF09897_consen 81 PDVVVLMGGLAMPKSGVTPEDVNELIKKISP-------KKIIGICF 119 (147)
T ss_dssp EEEEEEEGGGGSTTTS--HHHHHHHHHHHEE-------EEEEEEEE
T ss_pred CCEEEEEcccccCCCCCCHHHHHHHHHHhCc-------CCEEEEeh
Confidence 8999999997742 1222334566665432 34999994
No 386
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=26.57 E-value=2.1e+02 Score=26.01 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=25.9
Q ss_pred cCCEEEEcCCCCCCccchH-HHHHHHHHHHHhcCCCCCCcEEEE
Q 023716 119 LVNGVLYTGGWAKDGLYYA-IVEKVFKKILEKNDAGDHFPLYAH 161 (278)
Q Consensus 119 ~iDGlIl~GG~~~~p~~~~-~~~~li~~al~~~~~g~~~PVLGI 161 (278)
.+|||++.|...-.+.+.. +.+.+++.+.+.. + ...||+.-
T Consensus 39 Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~-~-g~~pvi~g 80 (296)
T TIGR03249 39 GLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTA-K-GKVPVYTG 80 (296)
T ss_pred CCCEEEECCCCcCcccCCHHHHHHHHHHHHHHh-C-CCCcEEEe
Confidence 5899999987664333333 4457888887754 2 34676633
No 387
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=25.85 E-value=1.8e+02 Score=26.11 Aligned_cols=77 Identities=12% Similarity=0.128 Sum_probs=39.1
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCC---------------ChhhHHHhcccCCEEEEcCCCCCCccc-hHHH---HHHH
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNE---------------PEDVLFEKLELVNGVLYTGGWAKDGLY-YAIV---EKVF 143 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~---------------~~~~l~~~l~~iDGlIl~GG~~~~p~~-~~~~---~~li 143 (278)
+.-+..+.++.+. .+.+++++..+. +.-.+.+.+++.|.+|+.||......+ ++.. -.+.
T Consensus 14 De~~l~~~l~~l~-~~~~~~v~s~~p~~~~~~~~v~~~~r~~~~~~~~~l~~~D~vI~gGG~l~~d~~~~~~~~~~~~~~ 92 (298)
T TIGR03609 14 DEALLAALLRELP-PGVEPTVLSNDPAETAKLYGVEAVNRRSLLAVLRALRRADVVIWGGGSLLQDVTSFRSLLYYLGLM 92 (298)
T ss_pred hHHHHHHHHHhcC-CCCeEEEecCChHHHHhhcCceEEccCCHHHHHHHHHHCCEEEECCcccccCCcccccHHHHHHHH
Confidence 3444444444443 466666665332 111234456789999988886542211 1111 1233
Q ss_pred HHHHHhcCCCCCCcEEEEechH
Q 023716 144 KKILEKNDAGDHFPLYAHCLGF 165 (278)
Q Consensus 144 ~~al~~~~~g~~~PVLGIClG~ 165 (278)
..+...+ +|++-...|+
T Consensus 93 ~~a~~~~-----k~~~~~g~gi 109 (298)
T TIGR03609 93 RLARLFG-----KPVILWGQGI 109 (298)
T ss_pred HHHHHcC-----CCEEEEeccc
Confidence 4444455 7776655554
No 388
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=25.61 E-value=3.7e+02 Score=24.22 Aligned_cols=67 Identities=13% Similarity=0.142 Sum_probs=36.4
Q ss_pred HHHHHHHHcCCeEEEE-eCCCChhhHHHhcccCCEEEE----cCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEE
Q 023716 89 SYVKFVESAGARVIPL-IYNEPEDVLFEKLELVNGVLY----TGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (278)
Q Consensus 89 syv~~le~~Ga~~v~i-~~~~~~~~l~~~l~~iDGlIl----~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVL 159 (278)
.|.+.+++.|..++.+ .++.+.+.+..+.+..+|.|. +|-...........+++++...+.. ..|+.
T Consensus 135 ~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t----~~Pi~ 206 (263)
T CHL00200 135 YLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMT----NKPII 206 (263)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhc----CCCEE
Confidence 4556666677666544 344456677777788887654 3311222233333455665555432 27774
No 389
>PRK12440 acetate kinase; Reviewed
Probab=25.30 E-value=60 Score=31.28 Aligned_cols=15 Identities=33% Similarity=0.893 Sum_probs=12.8
Q ss_pred hcccCCEEEEcCCCC
Q 023716 116 KLELVNGVLYTGGWA 130 (278)
Q Consensus 116 ~l~~iDGlIl~GG~~ 130 (278)
.|..+|+||||||-.
T Consensus 317 ~l~gvDaiVFTgGIG 331 (397)
T PRK12440 317 ALDSLDGIIFTGGIG 331 (397)
T ss_pred HhCCCCEEEECCccc
Confidence 457899999999976
No 390
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=25.16 E-value=2.3e+02 Score=25.59 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=27.2
Q ss_pred cCCEEEEcCCCCCCccchH-HHHHHHHHHHHhcCCCCCCcEEE-Eec
Q 023716 119 LVNGVLYTGGWAKDGLYYA-IVEKVFKKILEKNDAGDHFPLYA-HCL 163 (278)
Q Consensus 119 ~iDGlIl~GG~~~~p~~~~-~~~~li~~al~~~~~g~~~PVLG-ICl 163 (278)
.+|||++.|+..-...+.. +.+++++.+++.- +..+||+. +|.
T Consensus 34 Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~--~~~~pvi~gv~~ 78 (289)
T cd00951 34 GAAALFAAGGTGEFFSLTPDEYAQVVRAAVEET--AGRVPVLAGAGY 78 (289)
T ss_pred CCCEEEECcCCcCcccCCHHHHHHHHHHHHHHh--CCCCCEEEecCC
Confidence 5899999997653333333 4457888887754 23478764 553
No 391
>PRK12379 propionate/acetate kinase; Provisional
Probab=25.13 E-value=57 Score=31.45 Aligned_cols=16 Identities=31% Similarity=0.823 Sum_probs=13.2
Q ss_pred hcccCCEEEEcCCCCC
Q 023716 116 KLELVNGVLYTGGWAK 131 (278)
Q Consensus 116 ~l~~iDGlIl~GG~~~ 131 (278)
.|..+|+||||||-.-
T Consensus 314 ~L~~vDaIVFTGGIGe 329 (396)
T PRK12379 314 SLHRLDGIIFTGGIGE 329 (396)
T ss_pred HhCCCCEEEECCcccc
Confidence 4568999999999763
No 392
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=25.06 E-value=3.1e+02 Score=20.81 Aligned_cols=55 Identities=20% Similarity=0.289 Sum_probs=37.1
Q ss_pred HHHHHcCCeEEEEeCCCChhhHHHhc--ccCCEEEEcCCCCCCccchHHHHHHHHHHHHh
Q 023716 92 KFVESAGARVIPLIYNEPEDVLFEKL--ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEK 149 (278)
Q Consensus 92 ~~le~~Ga~~v~i~~~~~~~~l~~~l--~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~ 149 (278)
.++++.|.+++.+-.+.+.+++.+.+ .++|-|.|+.... ......+++++...+.
T Consensus 21 ~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~~---~~~~~~~~~i~~l~~~ 77 (119)
T cd02067 21 RALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSGLLT---THMTLMKEVIEELKEA 77 (119)
T ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecccc---ccHHHHHHHHHHHHHc
Confidence 57889999998886666666665544 4689999987632 3334555666666554
No 393
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=24.97 E-value=3.7e+02 Score=22.79 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=26.5
Q ss_pred hhhhHHHHHHHHHHc-CCeEEEEeCCCC--hhhH---------------HHhcccCCEEEEcC
Q 023716 83 ASYIAASYVKFVESA-GARVIPLIYNEP--EDVL---------------FEKLELVNGVLYTG 127 (278)
Q Consensus 83 ~~yi~~syv~~le~~-Ga~~v~i~~~~~--~~~l---------------~~~l~~iDGlIl~G 127 (278)
..-++....+-+++. |+.+.++...+. .+.+ .+.+..+|+|+|-.
T Consensus 14 T~~lA~~ia~g~~~~~g~ev~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~GS 76 (197)
T TIGR01755 14 IETMARAVAEGAREVDGAEVVVKRVPETVPEEVAEKSHGKTDQTAPVATPQELADYDAIIFGT 76 (197)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEeccccCcHHHHHhccCCcccCCccCCHHHHHHCCEEEEEe
Confidence 444556666777775 888777654321 1111 13466789988854
No 394
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=24.88 E-value=2.2e+02 Score=25.91 Aligned_cols=42 Identities=7% Similarity=0.097 Sum_probs=26.9
Q ss_pred cCCEEEEcCCCCCCccchH-HHHHHHHHHHHhcCCCCCCcEE-EEe
Q 023716 119 LVNGVLYTGGWAKDGLYYA-IVEKVFKKILEKNDAGDHFPLY-AHC 162 (278)
Q Consensus 119 ~iDGlIl~GG~~~~p~~~~-~~~~li~~al~~~~~g~~~PVL-GIC 162 (278)
.+|||++.|...-.+.+.. +..++++.+.+.. ...+||+ |++
T Consensus 34 Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~--~g~~pvi~gv~ 77 (294)
T TIGR02313 34 GSHAISVGGTSGEPGSLTLEERKQAIENAIDQI--AGRIPFAPGTG 77 (294)
T ss_pred CCCEEEECccCcccccCCHHHHHHHHHHHHHHh--CCCCcEEEECC
Confidence 5899999997653333333 4457888877644 2348887 444
No 395
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=24.85 E-value=5.3e+02 Score=23.39 Aligned_cols=85 Identities=13% Similarity=0.017 Sum_probs=44.6
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCC-eEEEEeCCCChh----hHHHhc-ccCCEEEEcCCCCCCc
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGA-RVIPLIYNEPED----VLFEKL-ELVNGVLYTGGWAKDG 133 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga-~~v~i~~~~~~~----~l~~~l-~~iDGlIl~GG~~~~p 133 (278)
..+||++..... + ....-+.....+.+++.|. .++......+.+ .+..+. .++||+|+.+...
T Consensus 24 ~~~Igvv~~~~~-------~-~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~--- 92 (330)
T PRK15395 24 DTRIGVTIYKYD-------D-NFMSVVRKAIEKDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDP--- 92 (330)
T ss_pred CceEEEEEecCc-------c-hHHHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeccCH---
Confidence 368998764211 1 1233334556677777764 444434332222 222333 3799999976532
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 134 LYYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 134 ~~~~~~~~li~~al~~~~~g~~~PVLGICl 163 (278)
. .....++.+.+.+ +|+.-+=+
T Consensus 93 ~---~~~~~l~~l~~~g-----iPvV~vd~ 114 (330)
T PRK15395 93 A---AAPTVIEKARGQD-----VPVVFFNK 114 (330)
T ss_pred H---HHHHHHHHHHHCC-----CcEEEEcC
Confidence 1 1223556666666 88766544
No 396
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.58 E-value=2.1e+02 Score=26.08 Aligned_cols=59 Identities=20% Similarity=0.341 Sum_probs=37.5
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeC--CCChhhHHHhcc------cCCEEEEc
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIY--NEPEDVLFEKLE------LVNGVLYT 126 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~--~~~~~~l~~~l~------~iDGlIl~ 126 (278)
.+|..+|..--.+.+ ...|+ ....++.++.|.....+++ +.+++++.+.++ .++|++++
T Consensus 32 ~~p~L~~i~vg~~~~--------s~~Y~-~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~Vq 98 (283)
T PRK14192 32 RTPILATILVGDDPA--------SATYV-RMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQ 98 (283)
T ss_pred CCCeEEEEEeCCChh--------HHHHH-HHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEe
Confidence 357666654432221 24554 4567889999999888887 555555554332 47899986
No 397
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=24.49 E-value=1.2e+02 Score=25.65 Aligned_cols=43 Identities=26% Similarity=0.328 Sum_probs=30.1
Q ss_pred HHHHHHHHHcCCeEEEEeCCCCh-------hhHHHhcccCCEEEEcCCCC
Q 023716 88 ASYVKFVESAGARVIPLIYNEPE-------DVLFEKLELVNGVLYTGGWA 130 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~-------~~l~~~l~~iDGlIl~GG~~ 130 (278)
..+.+.+++.|+.++.+|..... +.....+..+|+|+|+...+
T Consensus 11 ~~l~~~L~~~G~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iiftS~~a 60 (239)
T cd06578 11 DELAALLEALGAEVLELPLIEIEPLDDAELDAALADLDEYDWLIFTSPNA 60 (239)
T ss_pred HHHHHHHHHcCCcEEEeeeEEEecCChHHHHHHHHhcCCCCEEEEECHHH
Confidence 45778999999999988755331 22223445789999997654
No 398
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=24.47 E-value=3.2e+02 Score=24.46 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=24.3
Q ss_pred HHHHHHHHHcCCeEEE-EeCCCChhhHHHhcccCCEEEE
Q 023716 88 ASYVKFVESAGARVIP-LIYNEPEDVLFEKLELVNGVLY 125 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~-i~~~~~~~~l~~~l~~iDGlIl 125 (278)
..+++.+++.|..+++ +..+.+.+.+..+.+..+|.+.
T Consensus 130 ~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy 168 (256)
T TIGR00262 130 GDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVY 168 (256)
T ss_pred HHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEE
Confidence 3466677777877663 3444456677777778885544
No 399
>KOG2371 consensus Molybdopterin biosynthesis protein [Coenzyme transport and metabolism]
Probab=24.20 E-value=1.7e+02 Score=27.98 Aligned_cols=79 Identities=15% Similarity=0.138 Sum_probs=44.7
Q ss_pred CCCCcEEEEeCCCCCCCC-CCCCCCCchhhhHHHHHHHHHHcCCeEEEEe-CCCChh----hHHHhcccCCEEEEcCCCC
Q 023716 57 LNYRPVIGIVTHPGDGAS-GRLNNATNASYIAASYVKFVESAGARVIPLI-YNEPED----VLFEKLELVNGVLYTGGWA 130 (278)
Q Consensus 57 ~~~rPvIGIl~~~~~~~~-~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~-~~~~~~----~l~~~l~~iDGlIl~GG~~ 130 (278)
.+.+|+|.|++--..... .+...+...+.-....+..+...|+.++-.- ..++.+ .+.+..+-.|-||-+||-.
T Consensus 186 iykkpvVtV~sTgSel~~~d~~~pg~v~~~n~s~l~~l~~~~Gf~~i~~gvv~D~~~~i~e~L~e~~~~aDvIlTtGGvs 265 (411)
T KOG2371|consen 186 IYKKPVVTVSSTGSELNSPDRSGPGMVRDSNRSQLLELFQEHGFTAIDAGVVPDDVTRIKEKLREASSFADVILTTGGVS 265 (411)
T ss_pred eecccEEEEeeccccccCccccCCceeeecchHHHHHHHHHhCccccccccccCcHHHHHHHHHHhhhhccEEEecCCcc
Confidence 467899999776543221 1112222333434557778888898743220 112233 3444456688888899987
Q ss_pred CCccc
Q 023716 131 KDGLY 135 (278)
Q Consensus 131 ~~p~~ 135 (278)
+.+.-
T Consensus 266 m~~~D 270 (411)
T KOG2371|consen 266 MGPRD 270 (411)
T ss_pred ccchh
Confidence 65543
No 400
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=24.15 E-value=2.8e+02 Score=21.84 Aligned_cols=46 Identities=13% Similarity=-0.070 Sum_probs=25.2
Q ss_pred chhhhHHHHHHHHHHcCCeEEE-EeCCCChhhHHHhcccCCEEEEcCC
Q 023716 82 NASYIAASYVKFVESAGARVIP-LIYNEPEDVLFEKLELVNGVLYTGG 128 (278)
Q Consensus 82 ~~~yi~~syv~~le~~Ga~~v~-i~~~~~~~~l~~~l~~iDGlIl~GG 128 (278)
....++....+.++..|..+.+ .... +.+.....+.+.|.|+|...
T Consensus 13 nTe~iA~~ia~~l~~~g~~v~~~~~~~-~~~~~~~~~~~~d~iilgs~ 59 (140)
T TIGR01754 13 NTEEVAFMIQDYLQKDGHEVDILHRIG-TLADAPLDPENYDLVFLGTW 59 (140)
T ss_pred hHHHHHHHHHHHHhhCCeeEEeccccc-ccccCcCChhhCCEEEEEcC
Confidence 3566777777888888877652 2211 10111112446788887553
No 401
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=24.00 E-value=5.3e+02 Score=23.12 Aligned_cols=77 Identities=17% Similarity=0.129 Sum_probs=44.6
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHH
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAI 138 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~ 138 (278)
.+|+|=-.|+.-. .....+.+-..|+.|+.-. .+++..+..+..|+++|==|.. ++.+.+.
T Consensus 7 ~~PLVh~ITN~Vt---------------~n~~AN~~LA~GasPiMa~---~~~E~~e~~~~a~al~iNiGTl-~~~~~~~ 67 (246)
T PF02110_consen 7 KRPLVHCITNYVT---------------ANDVANALLAIGASPIMAE---APEEVEEFASIADALVINIGTL-TDERIEA 67 (246)
T ss_dssp H--EEEEE--TTT---------------HHHHHHHHHHCTSEEEE-----STTTHHHHHHCTSEEEEESTTS-SHHHHHH
T ss_pred cCCeEEEccccch---------------hhhHHHHHHHcCCCccccC---CHHHHHHHHHHcCEEEEECCCC-CHhHHHH
Confidence 4677776666431 1234467889999999864 3556777788899999965543 3344444
Q ss_pred HHHHHHHHHHhcCCCCCCcEE
Q 023716 139 VEKVFKKILEKNDAGDHFPLY 159 (278)
Q Consensus 139 ~~~li~~al~~~~~g~~~PVL 159 (278)
.+...+.+-+.+ +|+.
T Consensus 68 m~~A~~~A~~~~-----~PvV 83 (246)
T PF02110_consen 68 MKKAAKAANELG-----IPVV 83 (246)
T ss_dssp HHHHHHHHHHTT-------EE
T ss_pred HHHHHHHHHHcC-----CCEE
Confidence 455566666666 8875
No 402
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=23.83 E-value=4e+02 Score=23.30 Aligned_cols=74 Identities=15% Similarity=0.069 Sum_probs=44.3
Q ss_pred hhhHHHHHHHHHHcCCeEEEEeCCCChhhH-HHhcccCCEEEEc--CCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEE
Q 023716 84 SYIAASYVKFVESAGARVIPLIYNEPEDVL-FEKLELVNGVLYT--GGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYA 160 (278)
Q Consensus 84 ~yi~~syv~~le~~Ga~~v~i~~~~~~~~l-~~~l~~iDGlIl~--GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLG 160 (278)
.-|-..+.+.|++.|..+..-.+++++..+ ++.|++.|.||+- .+.+ ...++.++-++.+++++ .=+.|
T Consensus 22 ~~~~~~~~~~L~~~gf~V~~~~~~d~~~~~~~~~L~~~D~lV~~~~~~~~---~l~~eq~~~l~~~V~~G-----gGlv~ 93 (215)
T cd03142 22 DGMHGTIAAALAEYGFDVQTATLDEPEHGLTEEVLAETDVLLWWGHIAHD---EVKDEIVERVHRRVLDG-----MGLIV 93 (215)
T ss_pred chHHHHHHHHHHhcCcEEEEEeccCccccCCHhHHhcCCEEEEeCCCCcC---cCCHHHHHHHHHHHHcC-----CCEEE
Confidence 346667888999999888755544332111 2358899999982 2322 12233445555566666 56677
Q ss_pred EechH
Q 023716 161 HCLGF 165 (278)
Q Consensus 161 IClG~ 165 (278)
+=-|+
T Consensus 94 lHsg~ 98 (215)
T cd03142 94 LHSGH 98 (215)
T ss_pred ECCCc
Confidence 66555
No 403
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=23.77 E-value=3.6e+02 Score=21.15 Aligned_cols=66 Identities=8% Similarity=0.089 Sum_probs=42.5
Q ss_pred HHHHHHHHHHcCCeEEEEeCC--------CChhhH---HHhc--ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCC
Q 023716 87 AASYVKFVESAGARVIPLIYN--------EPEDVL---FEKL--ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAG 153 (278)
Q Consensus 87 ~~syv~~le~~Ga~~v~i~~~--------~~~~~l---~~~l--~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g 153 (278)
...+.++++..|.+++..+.. .+..-. .+.. ..+|.++|-.|.. .+ ..+++.+.+.+
T Consensus 54 ~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~---Df----~~~i~~lr~~G--- 123 (149)
T cd06167 54 QRGFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELAYKRRIDTIVLVSGDS---DF----VPLVERLRELG--- 123 (149)
T ss_pred HHHHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHhhhcCCCEEEEEECCc---cH----HHHHHHHHHcC---
Confidence 356889999999999988742 111111 1112 2488888766643 22 24667777777
Q ss_pred CCCcEEEEech
Q 023716 154 DHFPLYAHCLG 164 (278)
Q Consensus 154 ~~~PVLGIClG 164 (278)
+.|..+|..
T Consensus 124 --~~V~v~~~~ 132 (149)
T cd06167 124 --KRVIVVGFE 132 (149)
T ss_pred --CEEEEEccC
Confidence 889888876
No 404
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=23.70 E-value=2.6e+02 Score=25.33 Aligned_cols=40 Identities=18% Similarity=0.206 Sum_probs=25.2
Q ss_pred cCCEEEEcCCCCCCccch-HHHHHHHHHHHHhcCCCCCCcEEE
Q 023716 119 LVNGVLYTGGWAKDGLYY-AIVEKVFKKILEKNDAGDHFPLYA 160 (278)
Q Consensus 119 ~iDGlIl~GG~~~~p~~~-~~~~~li~~al~~~~~g~~~PVLG 160 (278)
.+|||++.|...-...+. ++.+.+++.+++..+ ..+||+.
T Consensus 38 Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~--~~~~via 78 (293)
T PRK04147 38 GIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAK--GKVKLIA 78 (293)
T ss_pred CCCEEEECCCccccccCCHHHHHHHHHHHHHHhC--CCCCEEe
Confidence 689999998655323333 344578888887542 3367664
No 405
>PF09075 STb_secrete: Heat-stable enterotoxin B, secretory; InterPro: IPR015160 Members of this family assume a helical secondary structure, with two alpha helices forming a disulphide cross-linked alpha-helical hairpin. The disulphide bonds are crucial for the toxic activity of the protein, and are required for maintenance of the tertiary structure, and subsequent interaction with the particulate form of guanylate cyclase, increasing cyclic GMP levels within the host intestinal epithelial cells []. ; PDB: 1EHS_A.
Probab=23.67 E-value=17 Score=23.09 Aligned_cols=16 Identities=13% Similarity=0.287 Sum_probs=10.6
Q ss_pred CcEEEEechHHHHHHH
Q 023716 156 FPLYAHCLGFELLTMI 171 (278)
Q Consensus 156 ~PVLGIClG~QlL~~~ 171 (278)
--.-|-|.|.|+|..+
T Consensus 30 dgtagacfgaqimvaa 45 (48)
T PF09075_consen 30 DGTAGACFGAQIMVAA 45 (48)
T ss_dssp SSS--TTTTTHHHHTT
T ss_pred cCccccccchhhhhhc
Confidence 3456889999998654
No 406
>PRK15453 phosphoribulokinase; Provisional
Probab=23.47 E-value=1.8e+02 Score=26.79 Aligned_cols=40 Identities=10% Similarity=0.236 Sum_probs=29.2
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCC
Q 023716 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN 107 (278)
Q Consensus 58 ~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~ 107 (278)
...|+|||++.++. +.+.++..+.+.+...|..++++..|
T Consensus 3 ~k~piI~ItG~SGs----------GKTTva~~l~~if~~~~~~~~vi~~D 42 (290)
T PRK15453 3 AKHPIIAVTGSSGA----------GTTTVKRAFEKIFRRENINAAVVEGD 42 (290)
T ss_pred CCCcEEEEECCCCC----------CHHHHHHHHHHHHhhcCCCeEEEecc
Confidence 34599999987754 36677777888887777777777544
No 407
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=23.45 E-value=4.2e+02 Score=21.72 Aligned_cols=66 Identities=15% Similarity=0.079 Sum_probs=37.1
Q ss_pred HHHHHHHHHH--cCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEE
Q 023716 87 AASYVKFVES--AGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (278)
Q Consensus 87 ~~syv~~le~--~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVL 159 (278)
.....+++++ .|.+++......+.+. +.... +.+||+++++.... ...+.+.+.+.+ +|++
T Consensus 19 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~-------~~~~~~~~~~~~-----ip~v 86 (269)
T cd01391 19 LAGIELAAEEIGRGLEVILADSQSDPERALEALRDLIQQGVDGIIGPPSSSS-------ALAVVELAAAAG-----IPVV 86 (269)
T ss_pred HHHHHHHHHHhCCceEEEEecCCCCHHHHHHHHHHHHHcCCCEEEecCCCHH-------HHHHHHHHHHcC-----CcEE
Confidence 3455667777 6777766654433222 22222 36999999876531 112445555566 8887
Q ss_pred EEech
Q 023716 160 AHCLG 164 (278)
Q Consensus 160 GIClG 164 (278)
.+=..
T Consensus 87 ~~~~~ 91 (269)
T cd01391 87 SLDAT 91 (269)
T ss_pred EecCC
Confidence 76443
No 408
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]
Probab=23.31 E-value=79 Score=28.81 Aligned_cols=69 Identities=25% Similarity=0.171 Sum_probs=41.8
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCC-----CccchHHHHHHHHHHHHhcCCCCCCcEEEEe
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK-----DGLYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~-----~p~~~~~~~~li~~al~~~~~g~~~PVLGIC 162 (278)
..|++++++.|+.+..++... .+++..-.-|.-+++|=..+ .|...++ +..++..++.. ++|++..|
T Consensus 41 ~~lve~l~~~gv~V~ll~~~~---~~Pd~VFt~D~~~v~~~~avl~r~~~p~R~gE-~~~~~~~~~~l----gi~i~~~~ 112 (267)
T COG1834 41 EALVEALEKNGVEVHLLPPIE---GLPDQVFTRDPGLVTGEGAVLARMGAPERRGE-EEAIKETLESL----GIPIYPRV 112 (267)
T ss_pred HHHHHHHHHCCCEEEEcCccc---CCCcceEeccceeEecccEEEeccCChhhccC-HHHHHHHHHHc----CCcccccc
Confidence 468999999999999998543 34444545677777774442 2222222 34555555544 27766655
Q ss_pred ch
Q 023716 163 LG 164 (278)
Q Consensus 163 lG 164 (278)
-.
T Consensus 113 ~~ 114 (267)
T COG1834 113 EA 114 (267)
T ss_pred cC
Confidence 43
No 409
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=23.24 E-value=1.3e+02 Score=28.44 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=32.5
Q ss_pred EEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHH
Q 023716 122 GVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLT 169 (278)
Q Consensus 122 GlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~ 169 (278)
||+.+||.. |.+....+.+++.++..+ .=|+||=.|.|=|-
T Consensus 6 aIlTSGGda--PGmNa~Iravvr~a~~~g-----~eV~Gi~~Gy~GL~ 46 (347)
T COG0205 6 AILTSGGDA--PGMNAVIRAVVRTAIKEG-----LEVFGIYNGYLGLL 46 (347)
T ss_pred EEEccCCCC--ccHHHHHHHHHHHHHHcC-----CEEEEEecchhhhc
Confidence 455666654 777777889999999887 99999999998663
No 410
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=23.24 E-value=4e+02 Score=25.08 Aligned_cols=45 Identities=29% Similarity=0.200 Sum_probs=28.5
Q ss_pred HHHHHcCCeEEEEeCCC-ChhhHHHhcc-cCCEEEEcCCCC-CCccch
Q 023716 92 KFVESAGARVIPLIYNE-PEDVLFEKLE-LVNGVLYTGGWA-KDGLYY 136 (278)
Q Consensus 92 ~~le~~Ga~~v~i~~~~-~~~~l~~~l~-~iDGlIl~GG~~-~~p~~~ 136 (278)
+.-+...|.++.-|++. +++.+.++++ ..|-||+-||+- +.|.|.
T Consensus 46 ~iaellNA~Vlttpwg~ynes~~~eI~~lnpd~VLIIGGp~AVs~~yE 93 (337)
T COG2247 46 PIAELLNAPVLTTPWGIYNESVLDEIIELNPDLVLIIGGPIAVSPNYE 93 (337)
T ss_pred HHHHHhCCeeEecCcccccHHHHHHHHhhCCceEEEECCCCcCChhHH
Confidence 44456688888767553 3444444443 689999999975 455443
No 411
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=23.24 E-value=1.1e+02 Score=27.07 Aligned_cols=80 Identities=11% Similarity=-0.033 Sum_probs=45.0
Q ss_pred HHHHHHHHHcCCeEEEEeCCC-----ChhhH---HHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEE
Q 023716 88 ASYVKFVESAGARVIPLIYNE-----PEDVL---FEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~-----~~~~l---~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVL 159 (278)
....+.|++.|+.++.+|.-. +...+ ...++.+|.|||+.-.++ +.+++...+.+-.-...|++
T Consensus 16 ~~l~~~l~~~G~~~~~~P~i~i~p~~~~~~~~~~l~~l~~~d~iifTS~naV--------~~~~~~l~~~~~~~~~~~~~ 87 (255)
T PRK05752 16 AALAASLAEAGIFSSSLPLLAIEPLPETPEQRALLLELDRYCAVIVVSKPAA--------RLGLELLDRYWPQPPQQPWF 87 (255)
T ss_pred HHHHHHHHHcCCCEEEcCcEEEeeCCCCHHHHHHHhcCCCCCEEEEECHHHH--------HHHHHHHHhhCCCCcCCEEE
Confidence 467889999999999886432 11112 134678999999965432 22222222222111126888
Q ss_pred EEechHHHHHHHHhCc
Q 023716 160 AHCLGFELLTMIISKD 175 (278)
Q Consensus 160 GIClG~QlL~~~~Gg~ 175 (278)
+|.-+---.....|-+
T Consensus 88 aVG~~Ta~al~~~G~~ 103 (255)
T PRK05752 88 SVGAATAAILQDYGLD 103 (255)
T ss_pred EECHHHHHHHHHcCCC
Confidence 8876655444444444
No 412
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=23.21 E-value=3.3e+02 Score=24.64 Aligned_cols=46 Identities=26% Similarity=0.341 Sum_probs=29.7
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEeCC-CChhhH----HHhcccCCEEEEcCCCC
Q 023716 81 TNASYIAASYVKFVESAGARVIPLIYN-EPEDVL----FEKLELVNGVLYTGGWA 130 (278)
Q Consensus 81 ~~~~yi~~syv~~le~~Ga~~v~i~~~-~~~~~l----~~~l~~iDGlIl~GG~~ 130 (278)
++..|++ +.|...|..+..+..- ++++.+ ....+..|-||++||-.
T Consensus 21 tNa~~la----~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGGLG 71 (255)
T COG1058 21 TNAAFLA----DELTELGVDLARITTVGDNPDRIVEALREASERADVVITTGGLG 71 (255)
T ss_pred chHHHHH----HHHHhcCceEEEEEecCCCHHHHHHHHHHHHhCCCEEEECCCcC
Confidence 3455543 6888999877655333 233333 34456799999999854
No 413
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=23.05 E-value=5.1e+02 Score=22.59 Aligned_cols=84 Identities=13% Similarity=0.011 Sum_probs=49.2
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcC-CeEEEEeCCCChhh----HH-H-hcccCCEEEEcCCCCC
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAG-ARVIPLIYNEPEDV----LF-E-KLELVNGVLYTGGWAK 131 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~G-a~~v~i~~~~~~~~----l~-~-~l~~iDGlIl~GG~~~ 131 (278)
..++|+|+...-+... +.. ...+.+.+.+.| ..+-..|.+..+.. .+ . +....|++|+.+....
T Consensus 97 ~g~tIaVl~~gld~~y----p~~-----n~~l~~~i~~~gglliSe~p~~~~~~~~~f~~RNriia~ls~~vivve~~~~ 167 (220)
T TIGR00732 97 NGRTIAVLGTGLDQIY----PRQ-----NSKLAAKIAENGGLLLSEYPPDTKPIKYNFPKRNRIISGLSRAVLVVEAPLK 167 (220)
T ss_pred CCCEEEEECCCCccCC----chh-----hHHHHHHHHHcCCEEEEecCCCCCCCcccHHHHHHHHHHhcCEEEEEECCCC
Confidence 4699999998754321 111 234555555555 66666666543211 01 1 1235799999887653
Q ss_pred CccchHHHHHHHHHHHHhcCCCCCCcEEEE
Q 023716 132 DGLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (278)
Q Consensus 132 ~p~~~~~~~~li~~al~~~~~g~~~PVLGI 161 (278)
++.+ ...+.|++.+ +||+.+
T Consensus 168 sGtl-----~ta~~A~~~g-----r~v~~~ 187 (220)
T TIGR00732 168 SGAL-----ITARYALEQG-----REVFAY 187 (220)
T ss_pred CchH-----HHHHHHHHhC-----CcEEEE
Confidence 3332 3567788888 999987
No 414
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=22.94 E-value=3.5e+02 Score=26.48 Aligned_cols=67 Identities=13% Similarity=0.014 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCCeEEEEeC-------CCChhhHHHhccc----CCEEEE-cCCCCCCccchHHHHHHHHHHHHhcCCCCC
Q 023716 88 ASYVKFVESAGARVIPLIY-------NEPEDVLFEKLEL----VNGVLY-TGGWAKDGLYYAIVEKVFKKILEKNDAGDH 155 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~-------~~~~~~l~~~l~~----iDGlIl-~GG~~~~p~~~~~~~~li~~al~~~~~g~~ 155 (278)
.+..+++..+|++++.++. ..+.+.+++.+.. .-.+++ +++ -..+...+..+++.+.|.+.+
T Consensus 162 ~S~~kAi~~~G~~pv~Vd~~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~-t~~~g~~ddL~eIa~la~k~g----- 235 (444)
T TIGR03531 162 KSCIKAISTAGFEPRVIETVLDGDELTTDVEDIERAIEEIGPDNILCVLSTTS-CFAPRSPDDIEEIAKICANYD----- 235 (444)
T ss_pred HHHHHHHHHcCCeEEEeeeeecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCC-cCCCcchhCHHHHHHHHHHcC-----
Confidence 5677999999999999983 2255666666642 122333 222 111111234456777777777
Q ss_pred CcEEE
Q 023716 156 FPLYA 160 (278)
Q Consensus 156 ~PVLG 160 (278)
+|+.=
T Consensus 236 I~lIv 240 (444)
T TIGR03531 236 IPHIV 240 (444)
T ss_pred CEEEE
Confidence 88743
No 415
>TIGR03432 yjhG_yagF probable dehydratase, YjhG/YagF family. This homolog of dihydroxy-acid dehydratases has an odd, sparse distribution. Members are found in two Acidobacteria, two Planctomycetes, Bacillus clausii KSM-K16, and (in two copies each) in strains K12-MG1655 and W3110 of Escherichia coli. The local context is not well conserved, but a few members are adjacent to homologs of the gluconate:H+ symporter (see TIGR00791).
Probab=22.94 E-value=7.9e+02 Score=25.36 Aligned_cols=73 Identities=11% Similarity=0.050 Sum_probs=43.0
Q ss_pred CCcEEEEeCCCCCCC--CCC-----C-CCCCchhhhHHHHHHHHHHcCCeEEEEeCCC-----------------ChhhH
Q 023716 59 YRPVIGIVTHPGDGA--SGR-----L-NNATNASYIAASYVKFVESAGARVIPLIYNE-----------------PEDVL 113 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~--~~~-----~-~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~-----------------~~~~l 113 (278)
.||.|||.....+-. .+. + .......-+.....+-++++|+.++.++... +.+.+
T Consensus 54 ~kP~I~I~ns~~~~~~~~~~~~~l~~~pgh~hl~~l~~~vk~gi~~aGg~P~ef~ti~vcDGia~G~~GM~ySL~sRelI 133 (640)
T TIGR03432 54 LGKEFLILSTHGGLRAADGTPIALGYHTGHWEVGLLMKAAAEEIKRDGAVPFAGFVSDPCDGRTQGTTGMFDSLPYRNDA 133 (640)
T ss_pred CCCEEEEEeCCcccccccccccccCcCCCcccHHHHHHHHHHHHHHcCceeEEeCCCCccCccccCCCcceechhhHHHH
Confidence 699999998876300 000 0 0112333455566678888999988875433 12222
Q ss_pred H----Hhc--cc-CCEEEEcCCCCC
Q 023716 114 F----EKL--EL-VNGVLYTGGWAK 131 (278)
Q Consensus 114 ~----~~l--~~-iDGlIl~GG~~~ 131 (278)
. ..+ .. +||+|+.+|-|+
T Consensus 134 A~siE~~v~ah~~~DgvV~i~~CDK 158 (640)
T TIGR03432 134 AMVMRRLIRSLPTRKGVIGIATCDK 158 (640)
T ss_pred HHHHHHHHhccCcCCeEEEeCcCCC
Confidence 2 222 23 699999999885
No 416
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=22.94 E-value=2.1e+02 Score=26.80 Aligned_cols=40 Identities=30% Similarity=0.399 Sum_probs=30.0
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCC
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE 108 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~ 108 (278)
+-++|||+.-|+.+ .|-+-..+.+.+.+.|-+|-+|-.|.
T Consensus 50 ~a~viGITG~PGaG----------KSTli~~L~~~l~~~G~rVaVlAVDP 89 (323)
T COG1703 50 NAHVIGITGVPGAG----------KSTLIEALGRELRERGHRVAVLAVDP 89 (323)
T ss_pred CCcEEEecCCCCCc----------hHHHHHHHHHHHHHCCcEEEEEEECC
Confidence 34699999999754 33344568888899999998887664
No 417
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=22.75 E-value=1.3e+02 Score=28.06 Aligned_cols=41 Identities=27% Similarity=0.361 Sum_probs=29.9
Q ss_pred EEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHH
Q 023716 122 GVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLT 169 (278)
Q Consensus 122 GlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~ 169 (278)
||+.+||+. |-+....+.+++.++..+ .-|+|+-.|+.=|.
T Consensus 4 aIltsGG~a--pGmNa~i~~vv~~a~~~g-----~~v~G~~~G~~GL~ 44 (317)
T cd00763 4 GVLTSGGDA--PGMNAAIRGVVRSAIAEG-----LEVYGIRDGYAGLI 44 (317)
T ss_pred EEEccCCCc--HHHHHHHHHHHHHHHHCC-----CEEEEEecCHHHhc
Confidence 455555553 555556678888888777 78999999998664
No 418
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=22.69 E-value=1.9e+02 Score=28.07 Aligned_cols=86 Identities=19% Similarity=0.293 Sum_probs=45.5
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHc--CCeEEEEeCCCC----hhhHHHhc------ccCCEEEEc-CC
Q 023716 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA--GARVIPLIYNEP----EDVLFEKL------ELVNGVLYT-GG 128 (278)
Q Consensus 62 vIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~--Ga~~v~i~~~~~----~~~l~~~l------~~iDGlIl~-GG 128 (278)
.|||.|.+.... -..+++.+.+. .+.+.+.|.... ...+...+ ..+|-||+. ||
T Consensus 131 ~i~vits~~~aa-------------~~D~~~~~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGG 197 (432)
T TIGR00237 131 RVGVITSQTGAA-------------LADILHILKRRDPSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGG 197 (432)
T ss_pred EEEEEeCCccHH-------------HHHHHHHHHhhCCCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCC
Confidence 699999874211 24556666654 356666654431 12222222 236888875 44
Q ss_pred CCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHH
Q 023716 129 WAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFE 166 (278)
Q Consensus 129 ~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~Q 166 (278)
++....|.=..+.+.+...... +||+- .-||+
T Consensus 198 Gs~eDL~~Fn~e~~~rai~~~~-----~Pvis-~iGHe 229 (432)
T TIGR00237 198 GSLEDLWSFNDEKVARAIFLSK-----IPIIS-AVGHE 229 (432)
T ss_pred CCHHHhhhcCcHHHHHHHHcCC-----CCEEE-ecCcC
Confidence 4443333222346666666667 99873 34444
No 419
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=22.69 E-value=1.5e+02 Score=17.22 Aligned_cols=20 Identities=20% Similarity=0.566 Sum_probs=14.8
Q ss_pred EEEEEEeCCCcEEEEeecCC
Q 023716 258 YVSTVQAYDYPVTAFQWHPE 277 (278)
Q Consensus 258 ~ieaie~~~~pi~GvQfHPE 277 (278)
.+..++....++.++.|||.
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~ 22 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPD 22 (39)
T ss_dssp EEEEEESSSSSEEEEEEETT
T ss_pred EEEEEcCCCCcEEEEEEecc
Confidence 34566666678999999985
No 420
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=22.67 E-value=3.4e+02 Score=20.49 Aligned_cols=72 Identities=17% Similarity=-0.097 Sum_probs=36.1
Q ss_pred hhhhHHHHH-HHHHHcCC-eEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEE
Q 023716 83 ASYIAASYV-KFVESAGA-RVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYA 160 (278)
Q Consensus 83 ~~yi~~syv-~~le~~Ga-~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLG 160 (278)
.++..+.+. ..+.+.|. .+..++ ..........+..-|-+|+..-.+ +..+..+.++.+.+++ .|+++
T Consensus 9 ~S~~~a~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~I~iS~sG----~t~e~~~~~~~a~~~g-----~~vi~ 78 (126)
T cd05008 9 TSYHAALVAKYLLERLAGIPVEVEA-ASEFRYRRPLLDEDTLVIAISQSG----ETADTLAALRLAKEKG-----AKTVA 78 (126)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEe-hhHhhhcCCCCCCCcEEEEEeCCc----CCHHHHHHHHHHHHcC-----CeEEE
Confidence 455555555 45666664 444333 111111111233345444432222 2224456788888888 99999
Q ss_pred Eech
Q 023716 161 HCLG 164 (278)
Q Consensus 161 IClG 164 (278)
|+-.
T Consensus 79 iT~~ 82 (126)
T cd05008 79 ITNV 82 (126)
T ss_pred EECC
Confidence 9954
No 421
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=22.64 E-value=3.2e+02 Score=22.75 Aligned_cols=75 Identities=15% Similarity=0.122 Sum_probs=38.7
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEe
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIC 162 (278)
...++....+.++. |..+.+++...... ..+...|.|||-++-- ...+......+++.-.. .-..+|+.-.|
T Consensus 14 T~~iA~~Ia~~l~~-g~~v~~~~~~~~~~---~~l~~yD~vIlGspi~-~G~~~~~~~~fl~~~~~---~l~~K~v~~F~ 85 (177)
T PRK11104 14 TRKIASYIASELKE-GIQCDVVNLHRIEE---PDLSDYDRVVIGASIR-YGHFHSALYKFVKKHAT---QLNQMPSAFFS 85 (177)
T ss_pred HHHHHHHHHHHhCC-CCeEEEEEhhhcCc---cCHHHCCEEEEECccc-cCCcCHHHHHHHHHHHH---HhCCCeEEEEE
Confidence 44555555666665 77777766543221 1356789977755421 12222233344433221 11227888877
Q ss_pred chH
Q 023716 163 LGF 165 (278)
Q Consensus 163 lG~ 165 (278)
.|+
T Consensus 86 v~l 88 (177)
T PRK11104 86 VNL 88 (177)
T ss_pred ech
Confidence 773
No 422
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=22.56 E-value=2.2e+02 Score=25.99 Aligned_cols=36 Identities=11% Similarity=0.115 Sum_probs=22.0
Q ss_pred HHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEech
Q 023716 113 LFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (278)
Q Consensus 113 l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG 164 (278)
+.+.+..+|.++.++|+ ..+-.++..+ +|+..++.|
T Consensus 246 ~~~~~~~~d~~i~~~g~-----------~~~~Ea~~~g-----~Pvv~~~~~ 281 (357)
T PRK00726 246 MAAAYAAADLVICRAGA-----------STVAELAAAG-----LPAILVPLP 281 (357)
T ss_pred HHHHHHhCCEEEECCCH-----------HHHHHHHHhC-----CCEEEecCC
Confidence 44455556666655542 1233456778 999999863
No 423
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=22.52 E-value=4.6e+02 Score=21.92 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=26.1
Q ss_pred HHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEech
Q 023716 113 LFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (278)
Q Consensus 113 l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG 164 (278)
+.+.+...||+||.=-. .+..|.+..+.++++.-.. .=.++|++-+|.|
T Consensus 61 ~~~~i~~aD~li~~tPe-Yn~s~pg~lKnaiD~l~~~--~~~~Kpv~~~~~s 109 (184)
T COG0431 61 LREAIAAADGLIIATPE-YNGSYPGALKNAIDWLSRE--ALGGKPVLLLGTS 109 (184)
T ss_pred HHHHHHhCCEEEEECCc-cCCCCCHHHHHHHHhCCHh--HhCCCcEEEEecC
Confidence 44566789999986221 1223334455555544332 1223897766654
No 424
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=22.48 E-value=2e+02 Score=25.82 Aligned_cols=36 Identities=8% Similarity=0.146 Sum_probs=23.5
Q ss_pred EEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEech
Q 023716 122 GVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (278)
Q Consensus 122 GlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG 164 (278)
-|+|+.|.+... ....+++++.+.+.+ ++|+.|..|
T Consensus 168 iIllTDG~~~~~--~~~~~~~~~~~~~~~-----v~vy~I~~~ 203 (296)
T TIGR03436 168 LIVISDGGDNRS--RDTLERAIDAAQRAD-----VAIYSIDAR 203 (296)
T ss_pred EEEEecCCCcch--HHHHHHHHHHHHHcC-----CEEEEeccC
Confidence 466787765322 123346677666677 999999986
No 425
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.46 E-value=4.9e+02 Score=22.20 Aligned_cols=44 Identities=5% Similarity=-0.107 Sum_probs=25.7
Q ss_pred hhhhHHHHHHHHHH-cCCeEEEEeCCCChhhHHHhc-ccCCEEEEcC
Q 023716 83 ASYIAASYVKFVES-AGARVIPLIYNEPEDVLFEKL-ELVNGVLYTG 127 (278)
Q Consensus 83 ~~yi~~syv~~le~-~Ga~~v~i~~~~~~~~l~~~l-~~iDGlIl~G 127 (278)
...+.....+++++ .|..++....+ ..+.+..+. .++||+|+.+
T Consensus 13 ~~~~~~gi~~~~~~~~g~~~~~~~~~-~~~~~~~l~~~~vdGiI~~~ 58 (265)
T cd01543 13 GRGVLRGIARYAREHGPWSIYLEPRG-LQEPLRWLKDWQGDGIIARI 58 (265)
T ss_pred hHHHHHHHHHHHHhcCCeEEEEeccc-chhhhhhccccccceEEEEC
Confidence 44555667788888 56666554332 222232222 3699999975
No 426
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=22.29 E-value=3.5e+02 Score=20.60 Aligned_cols=67 Identities=13% Similarity=0.007 Sum_probs=36.5
Q ss_pred HHHHHHHcCCeEEEEeCC-C--ChhhHHHhcc--cCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEE
Q 023716 90 YVKFVESAGARVIPLIYN-E--PEDVLFEKLE--LVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (278)
Q Consensus 90 yv~~le~~Ga~~v~i~~~-~--~~~~l~~~l~--~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGI 161 (278)
-.++|++.|..+..+..- . .++...-+.+ ++|.||.+-.+............+.+.|++.+ +|++--
T Consensus 34 Ta~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~-----Ip~~T~ 105 (112)
T cd00532 34 TSRVLADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYK-----IPVTTP 105 (112)
T ss_pred HHHHHHHcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcCCCCcccccCCChHHHHHHHHHcC-----CCEEEC
Confidence 447888889877665321 1 2322222333 68888875422211111112346777788888 998743
No 427
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=22.03 E-value=3.8e+02 Score=20.72 Aligned_cols=55 Identities=18% Similarity=0.126 Sum_probs=37.6
Q ss_pred HHHHHcCCeEEEEeCCCChhhHHHhc--ccCCEEEEcCCCCCCccchHHHHHHHHHHHHh
Q 023716 92 KFVESAGARVIPLIYNEPEDVLFEKL--ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEK 149 (278)
Q Consensus 92 ~~le~~Ga~~v~i~~~~~~~~l~~~l--~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~ 149 (278)
.+++..|.+++.+-.+.+.+++.+.. .++|.|.+++-. ..+....+++++...++
T Consensus 21 ~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~---~~~~~~~~~~~~~L~~~ 77 (122)
T cd02071 21 RALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLS---GGHMTLFPEVIELLREL 77 (122)
T ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcccc---hhhHHHHHHHHHHHHhc
Confidence 57889999999997776666655433 468999998764 23444455666665554
No 428
>PRK07324 transaminase; Validated
Probab=21.79 E-value=4.7e+02 Score=24.26 Aligned_cols=62 Identities=18% Similarity=0.071 Sum_probs=34.7
Q ss_pred HHHHHHHHcCCeEEEEeCCC------ChhhHHHhc-ccCCEEEEcCCCCCCcc-ch-HHHHHHHHHHHHhc
Q 023716 89 SYVKFVESAGARVIPLIYNE------PEDVLFEKL-ELVNGVLYTGGWAKDGL-YY-AIVEKVFKKILEKN 150 (278)
Q Consensus 89 syv~~le~~Ga~~v~i~~~~------~~~~l~~~l-~~iDGlIl~GG~~~~p~-~~-~~~~~li~~al~~~ 150 (278)
.|...++..|++++.++.+. +.+.+.+.+ .+...++++--..-.+. +. .+.+.+.+.+.+.+
T Consensus 116 ~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~ 186 (373)
T PRK07324 116 QLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVRPNTKLICINNANNPTGALMDRAYLEEIVEIARSVD 186 (373)
T ss_pred hHHHHHHHcCCEEEEEecccccCCCCCHHHHHHhCCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCC
Confidence 46677889999999998753 234455444 34667777521110111 11 12346677665544
No 429
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=21.78 E-value=1.4e+02 Score=27.96 Aligned_cols=41 Identities=27% Similarity=0.389 Sum_probs=30.0
Q ss_pred EEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHH
Q 023716 122 GVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLT 169 (278)
Q Consensus 122 GlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~ 169 (278)
||+.+||+. |-+....+.+++.+...+ .-|+|+..|+.=|.
T Consensus 4 ~Il~sGG~a--pG~N~~i~~~v~~~~~~g-----~~v~G~~~G~~GL~ 44 (338)
T cd00363 4 GVLTSGGDA--PGMNAAIRGVVRSAIAEG-----LEVYGIYEGYAGLV 44 (338)
T ss_pred EEEccCCCc--hhHHHHHHHHHHHHHHCC-----CEEEEEecChHHhC
Confidence 456666654 566666677888887766 78999999997653
No 430
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=21.65 E-value=7.4e+02 Score=23.98 Aligned_cols=38 Identities=18% Similarity=0.086 Sum_probs=21.6
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHc--CCeEEEEeC
Q 023716 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA--GARVIPLIY 106 (278)
Q Consensus 62 vIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~--Ga~~v~i~~ 106 (278)
.|+|++..+-+ | .+++-|-.+.++.|++. ++.++++..
T Consensus 2 ~i~i~G~~g~~------N-~GdeAil~~ii~~l~~~~p~~~i~v~S~ 41 (426)
T PRK10017 2 KLLILGNHTCG------N-RGDSAILRGLLDAINILNPHAEVDVMSR 41 (426)
T ss_pred eEEEEccccCC------C-ccHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 36666655432 1 23566677777777664 356666643
No 431
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=21.65 E-value=99 Score=26.42 Aligned_cols=42 Identities=29% Similarity=0.247 Sum_probs=29.6
Q ss_pred HHHHHHHHcCCeEEEEeCCCCh-----hhHHHhc---c--cCCEEEEcCCCC
Q 023716 89 SYVKFVESAGARVIPLIYNEPE-----DVLFEKL---E--LVNGVLYTGGWA 130 (278)
Q Consensus 89 syv~~le~~Ga~~v~i~~~~~~-----~~l~~~l---~--~iDGlIl~GG~~ 130 (278)
.+.+.+++.|+.++.+|.-... +.+...+ . ..|+|||+...+
T Consensus 2 ~l~~~l~~~G~~~~~~P~i~~~~~~~~~~l~~~l~~l~~~~~d~viftS~~a 53 (231)
T PF02602_consen 2 ELAALLRALGAEVIELPLIEIEPLPDLASLEAALEQLPPGNYDWVIFTSPNA 53 (231)
T ss_dssp HHHHHHHHTTEEEEEEESEEEEECCHHHHHHHHHHHHTGCCSSEEEESSHHH
T ss_pred HHHHHHHHCCCcEEEECCEEEEeCCCHHHHHHHHHhcccCCCCEEEEECHHH
Confidence 4678999999999988765421 2233333 3 899999997755
No 432
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=21.53 E-value=4.1e+02 Score=23.31 Aligned_cols=61 Identities=13% Similarity=-0.010 Sum_probs=35.9
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHh-cccCCEEEEcCC
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEK-LELVNGVLYTGG 128 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~-l~~iDGlIl~GG 128 (278)
..+||++..... .....-+.....+++++.|..++....+.+.+. +..+ -..+||||+.+.
T Consensus 35 ~~~ig~v~~~~~--------~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 100 (309)
T PRK11041 35 SRTILVIVPDIC--------DPFFSEIIRGIEVTAAEHGYLVLIGDCAHQNQQEKTFVNLIITKQIDGMLLLGS 100 (309)
T ss_pred CcEEEEEeCCCc--------CccHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 358999864311 112333445567778888988877655433321 1121 146999999864
No 433
>PLN02884 6-phosphofructokinase
Probab=21.50 E-value=2.8e+02 Score=26.85 Aligned_cols=62 Identities=13% Similarity=0.126 Sum_probs=41.2
Q ss_pred HHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCC-cEEEEechHHHHH
Q 023716 92 KFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHF-PLYAHCLGFELLT 169 (278)
Q Consensus 92 ~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~-PVLGIClG~QlL~ 169 (278)
.|++++|-|-.+.- ++. ...--|+++|++ .|-+....+.+++.+...+ . -|+||-.|++=|.
T Consensus 36 ~~~~~agpr~~~~~---~p~-------~~rIaIltsGGd-aPGmNa~Iravv~~a~~~g-----~~~V~Gi~~G~~GL~ 98 (411)
T PLN02884 36 QWVHRAGPRKKIYF---EPE-------EVKAAIVTCGGL-CPGLNDVIRQIVFTLEIYG-----VKNIVGIPFGYRGFF 98 (411)
T ss_pred hhhhhcCCceeEEe---CCc-------ceEEEEEcCCCC-CccHhHHHHHHHHHHHHcC-----CcEEEEEccCHHHHh
Confidence 58999998876542 111 234445555554 3666666677887776656 6 5999999998654
No 434
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=21.34 E-value=2.9e+02 Score=25.31 Aligned_cols=47 Identities=23% Similarity=0.314 Sum_probs=29.8
Q ss_pred cCCEEEEcC--CCCCCccchHH-----------HHHHHHHHHHhcCCCCCCcEEEEechHHHHHH
Q 023716 119 LVNGVLYTG--GWAKDGLYYAI-----------VEKVFKKILEKNDAGDHFPLYAHCLGFELLTM 170 (278)
Q Consensus 119 ~iDGlIl~G--G~~~~p~~~~~-----------~~~li~~al~~~~~g~~~PVLGIClG~QlL~~ 170 (278)
++|.||-.. |...+..||.. ...++..+.+.+ +|..||.-|=.-|.+
T Consensus 131 ~~d~lIaIERpGra~dG~Y~nmrG~~I~~~~a~~D~lf~~a~~~g-----i~tigIGDGGNEiGM 190 (291)
T PF14336_consen 131 RPDLLIAIERPGRAADGNYYNMRGEDISHLVAPLDDLFLAAKEPG-----IPTIGIGDGGNEIGM 190 (291)
T ss_pred CCCEEEEeCCcccCCCCCEecCcCCcCccccccHHHHHHHhhcCC-----CCEEEECCCchhccc
Confidence 355666544 44445555532 347777777766 999999988755544
No 435
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=21.32 E-value=3.3e+02 Score=25.70 Aligned_cols=81 Identities=9% Similarity=0.152 Sum_probs=42.8
Q ss_pred HHHHHHHHcCCeEEEEeCCCChhhHHHhcc-cCCEEEEcC--CCCCC--ccchHHHHHHHHHHHHhcCCCCCCcEE---E
Q 023716 89 SYVKFVESAGARVIPLIYNEPEDVLFEKLE-LVNGVLYTG--GWAKD--GLYYAIVEKVFKKILEKNDAGDHFPLY---A 160 (278)
Q Consensus 89 syv~~le~~Ga~~v~i~~~~~~~~l~~~l~-~iDGlIl~G--G~~~~--p~~~~~~~~li~~al~~~~~g~~~PVL---G 160 (278)
..++++++.=-.|+++.=..+.++.....+ .+|||+++| |...+ +.-.....++ ..++..+ +||+ |
T Consensus 215 ~~i~~~~~~~~~pvivKgv~~~~da~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i-~~~~~~~-----~~i~~dgG 288 (356)
T PF01070_consen 215 DDIEWIRKQWKLPVIVKGVLSPEDAKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEI-RAAVGDD-----IPIIADGG 288 (356)
T ss_dssp HHHHHHHHHCSSEEEEEEE-SHHHHHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHH-HHHHTTS-----SEEEEESS
T ss_pred HHHHHHhcccCCceEEEecccHHHHHHHHhcCCCEEEecCCCcccCccccccccccHHH-HhhhcCC-----eeEEEeCC
Confidence 347777765444555543356666665543 699999996 44332 1111111122 2233334 9998 7
Q ss_pred EechHHHH-HHHHhCc
Q 023716 161 HCLGFELL-TMIISKD 175 (278)
Q Consensus 161 IClG~QlL-~~~~Gg~ 175 (278)
|.+|.-++ ++++|.+
T Consensus 289 ir~g~Dv~kalaLGA~ 304 (356)
T PF01070_consen 289 IRRGLDVAKALALGAD 304 (356)
T ss_dssp --SHHHHHHHHHTT-S
T ss_pred CCCHHHHHHHHHcCCC
Confidence 99999887 5567776
No 436
>PRK05989 cobN cobaltochelatase subunit CobN; Reviewed
Probab=21.24 E-value=4.2e+02 Score=29.61 Aligned_cols=93 Identities=20% Similarity=0.301 Sum_probs=53.2
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCC-----hhhHHHhc-c--cCCEEEEcCCCCCC
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP-----EDVLFEKL-E--LVNGVLYTGGWAKD 132 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~-----~~~l~~~l-~--~iDGlIl~GG~~~~ 132 (278)
|+|||+-....... ....++ ...++.||+.|..|+++-...- .+.+.+++ . .+|.||=+.+....
T Consensus 202 p~vgilfyr~~~~~------~~~~~i-dali~~Le~~G~nvipvf~~~~k~~~~~~~~~~~~~~~~~vd~ii~~~~f~l~ 274 (1244)
T PRK05989 202 PTVAILFYRAHLQA------GNTAPI-DALIAALEARGLNPLPVFVSSLKDAESPEVLEDLFNADALVDAVLNATGFALA 274 (1244)
T ss_pred CeEEEEEecchhcc------CCcHHH-HHHHHHHHHCCCeEEEEEecCccccchHHHHHHHhcCCCCccEEEEcCCcccc
Confidence 99999987643221 234444 4688999999999998744322 23455555 3 47998855554432
Q ss_pred ccchHHHHHHHHHHHHhcCCCCCCcEE-EEechHHHHHHH
Q 023716 133 GLYYAIVEKVFKKILEKNDAGDHFPLY-AHCLGFELLTMI 171 (278)
Q Consensus 133 p~~~~~~~~li~~al~~~~~g~~~PVL-GIClG~QlL~~~ 171 (278)
.. ... ++...+.| +||| +|+.+ |-....
T Consensus 275 ~~--~~~---~~~l~~ln-----vPVlq~i~~~-~~~~~W 303 (1244)
T PRK05989 275 AA--AWD---VEVLAALD-----VPVLQVICSG-GNREAW 303 (1244)
T ss_pred Cc--chh---hHHHHHCC-----CCEEEEeeCC-CCHHHH
Confidence 10 011 22223456 8987 45544 444443
No 437
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=21.23 E-value=47 Score=31.18 Aligned_cols=13 Identities=54% Similarity=0.966 Sum_probs=11.0
Q ss_pred CCcEEEEeecCCC
Q 023716 266 DYPVTAFQWHPEV 278 (278)
Q Consensus 266 ~~pi~GvQfHPEk 278 (278)
+.|+|+.||||-|
T Consensus 106 ~spv~~~q~hp~k 118 (405)
T KOG1273|consen 106 DSPVWGAQWHPRK 118 (405)
T ss_pred cCccceeeecccc
Confidence 5689999999964
No 438
>PLN02828 formyltetrahydrofolate deformylase
Probab=21.19 E-value=4e+02 Score=24.24 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=24.6
Q ss_pred HHHHHHHcCCeEEEEeCCC---ChhhHHHhcccCCEEEEcC
Q 023716 90 YVKFVESAGARVIPLIYNE---PEDVLFEKLELVNGVLYTG 127 (278)
Q Consensus 90 yv~~le~~Ga~~v~i~~~~---~~~~l~~~l~~iDGlIl~G 127 (278)
..+..++.|.....+|... .++.+.+.++++|-+++.|
T Consensus 115 ~~~~A~~~gIP~~~~~~~~~~~~e~~~~~~l~~~DliVLAg 155 (268)
T PLN02828 115 VMRFLERHGIPYHYLPTTKENKREDEILELVKGTDFLVLAR 155 (268)
T ss_pred HHHHHHHcCCCEEEeCCCCCCCHHHHHHHHHhcCCEEEEee
Confidence 4456778888766666532 1234455666799888886
No 439
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=21.16 E-value=4.2e+02 Score=20.89 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=22.9
Q ss_pred cCCeEEEEeCCC--ChhhHHHhc-ccCCEEEEcCCCC
Q 023716 97 AGARVIPLIYNE--PEDVLFEKL-ELVNGVLYTGGWA 130 (278)
Q Consensus 97 ~Ga~~v~i~~~~--~~~~l~~~l-~~iDGlIl~GG~~ 130 (278)
.+.+++.+|... +++.+.+.| +.+|||++.|-+.
T Consensus 27 ~~vriIrvpC~Grv~~~~il~Af~~GADGV~V~gC~~ 63 (124)
T PF02662_consen 27 PNVRIIRVPCSGRVDPEFILRAFEKGADGVLVAGCHP 63 (124)
T ss_pred CCeEEEEccCCCccCHHHHHHHHHcCCCEEEEeCCCC
Confidence 346788888764 334444434 6799999999664
No 440
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=21.08 E-value=1.6e+02 Score=28.79 Aligned_cols=86 Identities=19% Similarity=0.211 Sum_probs=56.5
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccch
Q 023716 57 LNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYY 136 (278)
Q Consensus 57 ~~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~ 136 (278)
...+|.|+|+--..... ... ..-+.+.+++.|...++.+. . .|+--||.+.-||.-++--|-
T Consensus 182 ~~~~P~IAIvDf~~~~~--------~~E--f~~f~~~f~~~G~~~vI~d~----~----~L~y~~g~L~~~~~~ID~VyR 243 (445)
T PF14403_consen 182 RVEKPNIAIVDFLEYPT--------LSE--FEVFQRLFEEHGYDCVICDP----R----DLEYRDGRLYAGGRPIDAVYR 243 (445)
T ss_pred cCCCCcEEEEecccCCc--------cch--HHHHHHHHHHcCCceEecCh----H----HceecCCEEEECCEeeehhhH
Confidence 45689999998765322 122 24678899999999998753 2 245578888888876554332
Q ss_pred -----------HHHHHHHHHHHHhcCCCCCCcEEEEechH
Q 023716 137 -----------AIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (278)
Q Consensus 137 -----------~~~~~li~~al~~~~~g~~~PVLGIClG~ 165 (278)
+....+++...+.. +++.|==++-
T Consensus 244 R~Vt~e~l~~~d~~~~li~Ay~~~a-----v~~vgsfrs~ 278 (445)
T PF14403_consen 244 RFVTSELLERYDEVQPLIQAYRDGA-----VCMVGSFRSQ 278 (445)
T ss_pred hhhhHHhhhccccchHHHHHHhcCC-----eEEecchhhh
Confidence 22346666666656 8888866654
No 441
>PRK06696 uridine kinase; Validated
Probab=20.99 E-value=2.1e+02 Score=24.55 Aligned_cols=39 Identities=13% Similarity=0.085 Sum_probs=29.2
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCC
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN 107 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~ 107 (278)
...+|||.+.++. +.+.++....+.+...|..++.++.+
T Consensus 21 ~~~iI~I~G~sgs----------GKSTlA~~L~~~l~~~g~~v~~~~~D 59 (223)
T PRK06696 21 RPLRVAIDGITAS----------GKTTFADELAEEIKKRGRPVIRASID 59 (223)
T ss_pred CceEEEEECCCCC----------CHHHHHHHHHHHHHHcCCeEEEeccc
Confidence 4579999987753 36777888888888888877776643
No 442
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=20.93 E-value=5.9e+02 Score=22.67 Aligned_cols=40 Identities=15% Similarity=0.072 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEc
Q 023716 86 IAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYT 126 (278)
Q Consensus 86 i~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~ 126 (278)
-.....++|++.|.+++.+..+........ ..++|.++..
T Consensus 24 s~~~i~~al~~~g~~v~~i~~~~~~~~~~~-~~~~D~v~~~ 63 (304)
T PRK01372 24 SGAAVLAALREAGYDAHPIDPGEDIAAQLK-ELGFDRVFNA 63 (304)
T ss_pred hHHHHHHHHHHCCCEEEEEecCcchHHHhc-cCCCCEEEEe
Confidence 346788999999999999976543221111 2368988864
No 443
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=20.84 E-value=5.2e+02 Score=22.69 Aligned_cols=37 Identities=14% Similarity=0.207 Sum_probs=23.7
Q ss_pred HHHHHHHHcCCeEEE-EeCCCChhhHHHhcc-cCCEEEE
Q 023716 89 SYVKFVESAGARVIP-LIYNEPEDVLFEKLE-LVNGVLY 125 (278)
Q Consensus 89 syv~~le~~Ga~~v~-i~~~~~~~~l~~~l~-~iDGlIl 125 (278)
.+.+.+++.|..+++ +..+.+.+.++.+.+ ..|-|++
T Consensus 120 ~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~ 158 (242)
T cd04724 120 EFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYY 158 (242)
T ss_pred HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEE
Confidence 566777778877665 444445666676666 5566665
No 444
>PTZ00445 p36-lilke protein; Provisional
Probab=20.79 E-value=3e+02 Score=24.37 Aligned_cols=67 Identities=15% Similarity=0.234 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCc---c-----chHHHHHHHHHHHHhcCCCCCCc
Q 023716 86 IAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDG---L-----YYAIVEKVFKKILEKNDAGDHFP 157 (278)
Q Consensus 86 i~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p---~-----~~~~~~~li~~al~~~~~g~~~P 157 (278)
.+..+++.|++.|.+++.+-+|.+. +. +-+||+.... . -..+.+.+++.+.+.+ +|
T Consensus 30 ~~~~~v~~L~~~GIk~Va~D~DnTl------I~-----~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~-----I~ 93 (219)
T PTZ00445 30 SADKFVDLLNECGIKVIASDFDLTM------IT-----KHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSN-----IK 93 (219)
T ss_pred HHHHHHHHHHHcCCeEEEecchhhh------hh-----hhcccccCCCcchhhhhccCCHHHHHHHHHHHHCC-----Ce
Confidence 3577999999999999998665432 11 3467765321 0 1223457778777888 99
Q ss_pred EEEEechHHHH
Q 023716 158 LYAHCLGFELL 168 (278)
Q Consensus 158 VLGIClG~QlL 168 (278)
|.=+=.-=|..
T Consensus 94 v~VVTfSd~~~ 104 (219)
T PTZ00445 94 ISVVTFSDKEL 104 (219)
T ss_pred EEEEEccchhh
Confidence 98888777765
No 445
>PRK07157 acetate kinase; Provisional
Probab=20.78 E-value=94 Score=30.01 Aligned_cols=15 Identities=20% Similarity=0.587 Sum_probs=12.5
Q ss_pred hcc-cCCEEEEcCCCC
Q 023716 116 KLE-LVNGVLYTGGWA 130 (278)
Q Consensus 116 ~l~-~iDGlIl~GG~~ 130 (278)
.|. .+|+||||||-.
T Consensus 316 ~L~G~vDaiVFTgGIG 331 (400)
T PRK07157 316 KIGKKIDAIVFTAGVG 331 (400)
T ss_pred HhCCCCCEEEECCccc
Confidence 466 599999999976
No 446
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=20.75 E-value=2.1e+02 Score=27.09 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=28.4
Q ss_pred HHHHHHcCCeEEEEeCCCChhhHHHh-------------------------cccC----CEEEEcCCCCC
Q 023716 91 VKFVESAGARVIPLIYNEPEDVLFEK-------------------------LELV----NGVLYTGGWAK 131 (278)
Q Consensus 91 v~~le~~Ga~~v~i~~~~~~~~l~~~-------------------------l~~i----DGlIl~GG~~~ 131 (278)
.+.-...||.++-++|..+.+...+. .+.+ =.||+.||+..
T Consensus 223 aRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~ 292 (348)
T PRK09250 223 NHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASK 292 (348)
T ss_pred HHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCC
Confidence 44556789999999887655544443 4443 46999999875
No 447
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.72 E-value=4.5e+02 Score=23.15 Aligned_cols=93 Identities=17% Similarity=0.145 Sum_probs=56.6
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCCh--hhHHHhc----ccCCEEEEcCCCCC
Q 023716 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE--DVLFEKL----ELVNGVLYTGGWAK 131 (278)
Q Consensus 58 ~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~--~~l~~~l----~~iDGlIl~GG~~~ 131 (278)
...++|.|+..... . -+....+.+.+.|.+.+.|.++.+. +.+..+. ++...+++--|.-.
T Consensus 13 ~~~~vi~Vvr~~~~-----------~--~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl 79 (222)
T PRK07114 13 KATGMVPVFYHADV-----------E--VAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIV 79 (222)
T ss_pred HhCCEEEEEEcCCH-----------H--HHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCc
Confidence 34589999865321 1 1346789999999999999887532 3333322 33445666556554
Q ss_pred CccchHH--------------HHHHHHHHHHhcCCCCCCcEEE-EechHHHH
Q 023716 132 DGLYYAI--------------VEKVFKKILEKNDAGDHFPLYA-HCLGFELL 168 (278)
Q Consensus 132 ~p~~~~~--------------~~~li~~al~~~~~g~~~PVLG-IClG~QlL 168 (278)
++.-.+. ..++++++.+.+ +|++= ++-=-+++
T Consensus 80 ~~e~a~~a~~aGA~FiVsP~~~~~v~~~~~~~~-----i~~iPG~~TpsEi~ 126 (222)
T PRK07114 80 DAATAALYIQLGANFIVTPLFNPDIAKVCNRRK-----VPYSPGCGSLSEIG 126 (222)
T ss_pred CHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcC-----CCEeCCCCCHHHHH
Confidence 4433222 257899999888 88774 43333443
No 448
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=20.66 E-value=3.6e+02 Score=20.11 Aligned_cols=51 Identities=18% Similarity=0.182 Sum_probs=32.1
Q ss_pred CchhhhHHHHH-HHHHHcCCeEEEEeCCCC--hhhHH-HhcccCCEEEEcCCCCC
Q 023716 81 TNASYIAASYV-KFVESAGARVIPLIYNEP--EDVLF-EKLELVNGVLYTGGWAK 131 (278)
Q Consensus 81 ~~~~yi~~syv-~~le~~Ga~~v~i~~~~~--~~~l~-~~l~~iDGlIl~GG~~~ 131 (278)
...+|+++..+ +++++.|..+.+-..... ...+. +..+.+|.||+.|....
T Consensus 11 ~a~s~laa~~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~~Ad~vi~~~~~~~ 65 (96)
T cd05569 11 IAHTYMAAEALEKAAKKLGWEIKVETQGSLGIENELTAEDIAEADAVILAADVPV 65 (96)
T ss_pred hhHHHHHHHHHHHHHHHCCCeEEEEEecCcCccCcCCHHHHhhCCEEEEecCCCC
Confidence 34677777766 577889988765422221 11121 34678999999997653
No 449
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=20.58 E-value=4.3e+02 Score=23.85 Aligned_cols=61 Identities=8% Similarity=0.006 Sum_probs=36.2
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCC
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGG 128 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG 128 (278)
..+||++..... + .....+.....+.+++.|..++......+.+. +..+. ..+||+|+.+.
T Consensus 59 ~~~Igvi~~~~~-------~-~f~~~l~~gi~~~~~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~ 124 (346)
T PRK10401 59 SDTIGVVVMDVS-------D-AFFGALVKAVDLVAQQHQKYVLIGNSYHEAEKERHAIEVLIRQRCNALIVHSK 124 (346)
T ss_pred CCEEEEEeCCCC-------C-ccHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhcCCCEEEEeCC
Confidence 458999864211 1 22444555666778888988776654433322 22222 46999999864
No 450
>PRK07058 acetate kinase; Provisional
Probab=20.40 E-value=91 Score=30.06 Aligned_cols=15 Identities=27% Similarity=0.490 Sum_probs=12.7
Q ss_pred hcccCCEEEEcCCCC
Q 023716 116 KLELVNGVLYTGGWA 130 (278)
Q Consensus 116 ~l~~iDGlIl~GG~~ 130 (278)
.|..+|+||||||-.
T Consensus 315 ~Lg~vDaiVfTGGIg 329 (396)
T PRK07058 315 TLGGLDAVVFTAGIG 329 (396)
T ss_pred HhCCCCEEEECCccc
Confidence 457899999999976
No 451
>PRK06348 aspartate aminotransferase; Provisional
Probab=20.39 E-value=4.4e+02 Score=24.48 Aligned_cols=60 Identities=17% Similarity=0.211 Sum_probs=34.7
Q ss_pred HHHHHHHHcCCeEEEEeCCC------ChhhHHHhc-ccCCEEEEcCCCCCCc---cch-HHHHHHHHHHHHhc
Q 023716 89 SYVKFVESAGARVIPLIYNE------PEDVLFEKL-ELVNGVLYTGGWAKDG---LYY-AIVEKVFKKILEKN 150 (278)
Q Consensus 89 syv~~le~~Ga~~v~i~~~~------~~~~l~~~l-~~iDGlIl~GG~~~~p---~~~-~~~~~li~~al~~~ 150 (278)
.|...++..|++++.++... +.+.+++.+ ...+.|+++ -+. +| .+. .+.+++++.+.+.+
T Consensus 125 ~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~-~p~-NPtG~~~s~~~~~~l~~~a~~~~ 195 (384)
T PRK06348 125 PYKDQIEMVGGKPIILETYEEDGFQINVKKLEALITSKTKAIILN-SPN-NPTGAVFSKETLEEIAKIAIEYD 195 (384)
T ss_pred chHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCcCccEEEEe-CCC-CCCCcCCCHHHHHHHHHHHHHCC
Confidence 46778888999999887531 334555544 356777775 222 11 111 23456666665544
No 452
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=20.34 E-value=3.6e+02 Score=24.87 Aligned_cols=42 Identities=19% Similarity=0.195 Sum_probs=26.2
Q ss_pred HHHHHHHHHHcCCeEEEEeCCC----ChhhHHHhcccCCEEEEcCCCC
Q 023716 87 AASYVKFVESAGARVIPLIYNE----PEDVLFEKLELVNGVLYTGGWA 130 (278)
Q Consensus 87 ~~syv~~le~~Ga~~v~i~~~~----~~~~l~~~l~~iDGlIl~GG~~ 130 (278)
...+++.|++.|+.++++-... ....+.+.+..+|-|| ||+.
T Consensus 196 ~~~~v~~Lr~~gvD~II~LsH~g~~~~d~~lA~~v~gIDvIi--gGHs 241 (313)
T cd08162 196 IQPSIDALTAQGINKIILLSHLQQISIEQALAALLSGVDVII--AGGS 241 (313)
T ss_pred HHHHHHHHHHCCCCEEEEEecccccchHHHHHhcCCCCCEEE--eCCC
Confidence 4568888888888877763333 1223455556778655 6654
No 453
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=20.28 E-value=89 Score=30.19 Aligned_cols=40 Identities=13% Similarity=0.266 Sum_probs=23.7
Q ss_pred hc-ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHH
Q 023716 116 KL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFEL 167 (278)
Q Consensus 116 ~l-~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~Ql 167 (278)
.| ..+|+||||||-.-.. ..++..+.+. +-.|||.+=-+.
T Consensus 319 ~L~g~vDaiVfTGGIgE~s-------~~lr~~I~~~-----l~~lGi~lD~~~ 359 (402)
T PRK00180 319 ALNGRLDAIVFTAGIGENS-------ALVREKVLEG-----LEFLGIELDPEK 359 (402)
T ss_pred HhcCCCCEEEEcCccccCC-------HHHHHHHHhh-----hhhcCeeeCHHH
Confidence 35 6799999999966221 2333334445 566676655433
No 454
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=20.08 E-value=5.1e+02 Score=24.31 Aligned_cols=62 Identities=15% Similarity=0.141 Sum_probs=40.1
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCCh--------hhHHHhcccCCEEEEcCCC
Q 023716 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE--------DVLFEKLELVNGVLYTGGW 129 (278)
Q Consensus 58 ~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~--------~~l~~~l~~iDGlIl~GG~ 129 (278)
+..|+|+|++.++++ .+.+-...++.+++.|.++-.|-.+... |...-.-..++.+++.++.
T Consensus 203 ~~~~~~~~~g~~~~G----------Ktt~~~~l~~~l~~~g~~v~~iKh~~h~~~~d~~g~Ds~r~~~aGa~~v~~~~~~ 272 (366)
T PRK14489 203 GAPPLLGVVGYSGTG----------KTTLLEKLIPELIARGYRIGLIKHSHHRVDIDKPGKDSHRLRAAGANPTMIVCPE 272 (366)
T ss_pred CCccEEEEecCCCCC----------HHHHHHHHHHHHHHcCCEEEEEEECCcccCCCCCCChhHHHHhCCCceEEEEcCC
Confidence 346799999987543 4445567889999999999888654221 1111122457777776654
No 455
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=20.05 E-value=1.3e+02 Score=23.60 Aligned_cols=46 Identities=15% Similarity=0.017 Sum_probs=22.9
Q ss_pred HHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechH
Q 023716 113 LFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (278)
Q Consensus 113 l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~ 165 (278)
+.+.++..+-+|+.-|... ....-...-++.|++.+ +||+||.+.-
T Consensus 64 I~~~i~~s~~~IVLig~~T--~~s~wV~~EI~~A~~~~-----~~Ii~V~~~~ 109 (130)
T PF08937_consen 64 IRERIKNSSVTIVLIGPNT--AKSKWVNWEIEYALKKG-----KPIIGVYLPG 109 (130)
T ss_dssp HHHHHHTEEEEEEE--TT------HHHHHHHHHHTTT--------EEEEETT-
T ss_pred HHHHHhcCCEEEEEeCCCc--ccCcHHHHHHHHHHHCC-----CCEEEEECCC
Confidence 4445667777777766652 11222334555666666 9999998643
No 456
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=20.00 E-value=2.6e+02 Score=25.73 Aligned_cols=58 Identities=17% Similarity=0.235 Sum_probs=34.9
Q ss_pred CeEEEEe--CCCChhhHHHhcccCCEEEEcC-CCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEech
Q 023716 99 ARVIPLI--YNEPEDVLFEKLELVNGVLYTG-GWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (278)
Q Consensus 99 a~~v~i~--~~~~~~~l~~~l~~iDGlIl~G-G~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG 164 (278)
-++.++. ...+.+.+...+..++|||+-| |... ......+.++.+.+++ +||.-+.+-
T Consensus 202 ~~V~il~~~pG~~~~~l~~~~~~~~GlVl~~~G~Gn---~~~~~~~~l~~a~~~g-----ipVV~~sr~ 262 (313)
T PF00710_consen 202 PRVAILYLYPGMDAELLDAALAGAKGLVLEGYGAGN---VPPALLEALARAVERG-----IPVVVTSRC 262 (313)
T ss_dssp S-EEEEE--TT--THHHHHHHTT-SEEEEEEBTTTB---SSHHHHHHHHHHHHTT-----SEEEEEESS
T ss_pred CCEEEEEECCCCCHHHHHHHhccCCEEEEeccCCCC---CCHHHHHHHHHHHhcC-----ceEEEeccc
Confidence 3444443 3345566666668899999977 4432 2224456778888888 999887653
Done!