Query 023716
Match_columns 278
No_of_seqs 225 out of 1814
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 11:35:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023716.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023716hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l9x_A Gamma-glutamyl hydrolas 100.0 4.9E-38 1.7E-42 289.0 13.6 229 43-278 13-244 (315)
2 3fij_A LIN1909 protein; 11172J 100.0 2.8E-34 9.7E-39 256.3 16.1 193 58-278 2-221 (254)
3 1wl8_A GMP synthase [glutamine 99.9 3.7E-27 1.3E-31 200.7 12.1 156 88-278 14-169 (189)
4 2a9v_A GMP synthase; structura 99.9 2.7E-27 9.1E-32 205.8 9.1 153 88-278 27-182 (212)
5 2vpi_A GMP synthase; guanine m 99.9 5.7E-27 2E-31 204.7 10.8 169 60-278 24-192 (218)
6 1qdl_B Protein (anthranilate s 99.9 4.6E-26 1.6E-30 195.2 15.7 158 88-278 15-178 (195)
7 1i1q_B Anthranilate synthase c 99.9 7.8E-26 2.7E-30 193.2 16.3 158 87-278 13-172 (192)
8 1a9x_B Carbamoyl phosphate syn 99.9 1.3E-24 4.5E-29 203.6 15.8 154 88-278 202-355 (379)
9 1o1y_A Conserved hypothetical 99.9 6.1E-25 2.1E-29 194.2 11.7 155 89-278 28-188 (239)
10 1gpm_A GMP synthetase, XMP ami 99.9 2.1E-25 7.3E-30 217.7 9.0 180 58-278 5-184 (525)
11 3m3p_A Glutamine amido transfe 99.9 2.4E-24 8.2E-29 191.8 14.2 159 88-278 18-179 (250)
12 2w7t_A CTP synthetase, putativ 99.9 4.4E-24 1.5E-28 192.3 14.5 201 61-278 9-236 (273)
13 3tqi_A GMP synthase [glutamine 99.9 1.1E-24 3.6E-29 212.8 10.4 179 59-278 9-187 (527)
14 2ywb_A GMP synthase [glutamine 99.9 5.6E-25 1.9E-29 213.7 6.3 159 83-278 9-167 (503)
15 3uow_A GMP synthetase; structu 99.9 5.1E-24 1.7E-28 209.1 12.1 170 88-278 21-212 (556)
16 3l7n_A Putative uncharacterize 99.9 6.7E-24 2.3E-28 187.0 11.2 160 88-278 15-182 (236)
17 2ywj_A Glutamine amidotransfer 99.9 9.6E-24 3.3E-28 179.0 8.5 151 88-278 13-168 (186)
18 2v4u_A CTP synthase 2; pyrimid 99.9 2.1E-23 7.1E-28 189.4 11.1 194 59-278 24-256 (289)
19 4gud_A Imidazole glycerol phos 99.9 2.5E-23 8.5E-28 179.7 9.0 162 88-278 16-188 (211)
20 2vxo_A GMP synthase [glutamine 99.9 2.1E-23 7.3E-28 209.0 8.5 153 89-278 44-197 (697)
21 2ywd_A Glutamine amidotransfer 99.9 2.2E-23 7.5E-28 177.1 7.0 168 60-278 2-175 (191)
22 1vco_A CTP synthetase; tetrame 99.9 3.5E-22 1.2E-26 194.7 13.6 205 58-278 298-525 (550)
23 3d54_D Phosphoribosylformylgly 99.9 6.4E-22 2.2E-26 170.7 12.8 173 60-278 2-189 (213)
24 3r75_A Anthranilate/para-amino 99.9 6.1E-22 2.1E-26 197.0 10.8 153 88-278 460-616 (645)
25 3nva_A CTP synthase; rossman f 99.9 3.3E-21 1.1E-25 185.4 14.6 196 58-278 291-514 (535)
26 1q7r_A Predicted amidotransfer 99.9 5.4E-22 1.9E-26 172.8 8.0 174 54-278 17-195 (219)
27 1s1m_A CTP synthase; CTP synth 99.9 2.9E-21 9.8E-26 188.0 13.6 195 59-278 288-518 (545)
28 1gpw_B Amidotransferase HISH; 99.9 2.3E-21 8E-26 166.2 11.0 157 88-278 14-181 (201)
29 2abw_A PDX2 protein, glutamina 99.8 5.5E-21 1.9E-25 167.1 7.5 176 59-278 2-199 (227)
30 1jvn_A Glutamine, bifunctional 99.8 6.8E-21 2.3E-25 186.9 6.6 177 60-278 4-199 (555)
31 2iss_D Glutamine amidotransfer 99.8 4.7E-20 1.6E-24 159.3 9.9 153 88-278 33-193 (208)
32 2nv0_A Glutamine amidotransfer 99.8 1.2E-19 4.1E-24 154.9 11.7 154 89-278 15-173 (196)
33 1ka9_H Imidazole glycerol phos 99.8 1.1E-19 3.7E-24 155.9 10.1 154 88-278 16-181 (200)
34 2vdj_A Homoserine O-succinyltr 99.6 3.1E-15 1E-19 136.1 14.5 137 117-278 97-238 (301)
35 2h2w_A Homoserine O-succinyltr 99.6 8.9E-15 3E-19 133.5 15.5 136 117-278 109-249 (312)
36 3ugj_A Phosphoribosylformylgly 99.1 3.8E-10 1.3E-14 119.4 11.6 94 59-171 1046-1152(1303)
37 3l4e_A Uncharacterized peptida 98.4 2.5E-07 8.7E-12 79.5 5.0 98 60-170 27-128 (206)
38 1fy2_A Aspartyl dipeptidase; s 98.3 9.1E-07 3.1E-11 77.1 7.4 95 59-171 30-129 (229)
39 1oi4_A Hypothetical protein YH 97.9 5.8E-05 2E-09 63.5 9.4 96 60-171 23-134 (193)
40 4hcj_A THIJ/PFPI domain protei 97.3 0.0008 2.7E-08 56.0 8.6 100 56-171 4-117 (177)
41 2rk3_A Protein DJ-1; parkinson 97.2 0.0007 2.4E-08 56.8 7.5 95 61-171 4-115 (197)
42 3l18_A Intracellular protease 97.2 0.0011 3.8E-08 53.9 8.3 95 61-171 3-111 (168)
43 2vrn_A Protease I, DR1199; cys 97.2 0.0015 5E-08 54.3 8.6 97 59-171 8-124 (190)
44 3efe_A THIJ/PFPI family protei 97.1 0.003 1E-07 53.8 9.8 96 60-171 5-121 (212)
45 1vhq_A Enhancing lycopene bios 97.0 0.002 6.9E-08 55.6 8.1 82 89-175 29-154 (232)
46 3f5d_A Protein YDEA; unknow pr 96.9 0.0039 1.3E-07 52.9 9.0 95 60-171 3-109 (206)
47 3ej6_A Catalase-3; heme, hydro 96.8 0.01 3.5E-07 59.0 12.4 96 61-171 538-646 (688)
48 2ab0_A YAJL; DJ-1/THIJ superfa 96.7 0.0023 7.9E-08 54.1 6.1 94 62-171 4-116 (205)
49 2fex_A Conserved hypothetical 96.7 0.0024 8.1E-08 53.1 6.0 94 62-171 3-110 (188)
50 3ttv_A Catalase HPII; heme ori 96.6 0.0052 1.8E-07 61.6 8.7 94 61-171 601-708 (753)
51 4e08_A DJ-1 beta; flavodoxin-l 96.6 0.0058 2E-07 50.8 7.6 95 61-171 6-116 (190)
52 3cne_A Putative protease I; st 96.2 0.0045 1.5E-07 50.6 4.7 49 118-171 65-120 (175)
53 3uk7_A Class I glutamine amido 96.2 0.012 4E-07 54.6 8.0 97 59-171 11-137 (396)
54 3uk7_A Class I glutamine amido 96.2 0.012 4.3E-07 54.4 8.1 97 59-171 204-330 (396)
55 2iuf_A Catalase; oxidoreductas 96.2 0.013 4.5E-07 58.3 8.5 99 59-171 528-648 (688)
56 3er6_A Putative transcriptiona 96.2 0.012 4.2E-07 49.8 7.3 50 117-171 72-124 (209)
57 3l3b_A ES1 family protein; ssg 96.1 0.011 3.9E-07 51.5 6.9 79 89-172 46-168 (242)
58 3ewn_A THIJ/PFPI family protei 95.8 0.024 8.2E-07 49.7 7.8 95 61-171 24-133 (253)
59 3ot1_A 4-methyl-5(B-hydroxyeth 95.7 0.015 5.1E-07 49.1 5.9 95 61-171 10-121 (208)
60 3gra_A Transcriptional regulat 95.6 0.015 5.1E-07 49.0 5.5 49 117-171 69-117 (202)
61 3fse_A Two-domain protein cont 95.4 0.033 1.1E-06 51.5 7.4 95 61-171 11-121 (365)
62 1sy7_A Catalase 1; heme oxidat 95.4 0.044 1.5E-06 55.0 8.7 99 59-173 533-646 (715)
63 3en0_A Cyanophycinase; serine 94.9 0.031 1.1E-06 50.1 5.5 97 60-170 56-160 (291)
64 1u9c_A APC35852; structural ge 94.8 0.014 4.7E-07 49.7 2.9 78 89-171 33-138 (224)
65 1rw7_A YDR533CP; alpha-beta sa 94.1 0.019 6.4E-07 49.7 2.1 49 118-171 97-147 (243)
66 3n7t_A Macrophage binding prot 94.0 0.029 1E-06 48.9 3.1 49 118-171 104-154 (247)
67 3kkl_A Probable chaperone prot 93.8 0.031 1E-06 48.7 3.0 49 118-171 97-147 (244)
68 3noq_A THIJ/PFPI family protei 93.2 0.071 2.4E-06 45.8 4.2 94 61-171 6-113 (231)
69 1n57_A Chaperone HSP31, protei 93.1 0.047 1.6E-06 48.7 3.0 50 117-171 143-194 (291)
70 3mgk_A Intracellular protease/ 93.0 0.046 1.6E-06 46.3 2.6 95 61-171 5-113 (211)
71 4gdh_A DJ-1, uncharacterized p 90.2 0.3 1E-05 40.5 4.7 75 89-168 22-120 (194)
72 3h75_A Periplasmic sugar-bindi 88.0 2 6.8E-05 38.0 8.8 86 59-163 2-94 (350)
73 3pzy_A MOG; ssgcid, seattle st 85.1 0.41 1.4E-05 39.0 2.3 69 56-132 3-79 (164)
74 3bhn_A THIJ/PFPI domain protei 85.1 0.52 1.8E-05 40.6 3.1 94 60-171 20-128 (236)
75 3tb6_A Arabinose metabolism tr 83.0 10 0.00035 31.9 10.6 88 60-163 15-107 (298)
76 3m9w_A D-xylose-binding peripl 82.9 9.9 0.00034 32.6 10.6 84 60-162 2-90 (313)
77 3l6u_A ABC-type sugar transpor 81.7 8.9 0.00031 32.3 9.7 86 59-163 7-97 (293)
78 2an1_A Putative kinase; struct 80.8 1.3 4.5E-05 38.8 4.0 83 61-164 6-96 (292)
79 3l49_A ABC sugar (ribose) tran 80.4 11 0.00038 31.7 9.9 84 60-162 5-93 (291)
80 1u0t_A Inorganic polyphosphate 80.2 2.9 0.0001 37.1 6.2 82 62-164 6-108 (307)
81 3jy6_A Transcriptional regulat 80.1 10 0.00035 31.8 9.5 83 59-163 6-93 (276)
82 3rot_A ABC sugar transporter, 79.7 9.8 0.00034 32.4 9.3 85 59-162 2-93 (297)
83 3o74_A Fructose transport syst 78.8 16 0.00054 30.3 10.2 82 61-162 3-89 (272)
84 3uug_A Multiple sugar-binding 78.6 11 0.00037 32.5 9.4 85 59-162 2-91 (330)
85 2pjk_A 178AA long hypothetical 78.2 6.5 0.00022 32.1 7.2 71 57-132 12-94 (178)
86 1y5e_A Molybdenum cofactor bio 77.6 5 0.00017 32.3 6.4 68 57-131 10-84 (169)
87 1di6_A MOGA, molybdenum cofact 77.3 2.4 8.4E-05 35.3 4.4 68 58-132 1-79 (195)
88 3ksm_A ABC-type sugar transpor 77.3 13 0.00044 30.9 9.2 83 61-162 1-91 (276)
89 3pfn_A NAD kinase; structural 76.9 1.4 4.9E-05 40.5 3.1 83 62-165 40-142 (365)
90 3kbq_A Protein TA0487; structu 75.0 2.3 8E-05 34.8 3.6 67 60-131 3-74 (172)
91 3k4h_A Putative transcriptiona 74.8 19 0.00065 30.2 9.7 88 59-162 7-99 (292)
92 2ioj_A Hypothetical protein AF 74.7 7.6 0.00026 30.0 6.5 71 88-171 42-114 (139)
93 1mkz_A Molybdenum cofactor bio 74.4 8.2 0.00028 31.2 6.8 67 58-131 8-81 (172)
94 1g8l_A Molybdopterin biosynthe 74.4 10 0.00035 35.2 8.3 76 58-133 175-257 (411)
95 3g1w_A Sugar ABC transporter; 73.4 20 0.00067 30.4 9.5 85 60-163 4-94 (305)
96 2fn9_A Ribose ABC transporter, 72.8 19 0.00067 30.2 9.3 83 61-162 3-90 (290)
97 1z0s_A Probable inorganic poly 72.6 7.7 0.00026 34.2 6.6 70 62-164 31-100 (278)
98 1uz5_A MOEA protein, 402AA lon 71.4 9.3 0.00032 35.4 7.2 76 57-132 177-259 (402)
99 2dri_A D-ribose-binding protei 71.3 17 0.00059 30.3 8.5 85 60-163 1-90 (271)
100 3cs3_A Sugar-binding transcrip 70.9 17 0.00059 30.4 8.4 61 59-129 7-67 (277)
101 3rfq_A Pterin-4-alpha-carbinol 70.5 3.8 0.00013 33.9 3.9 71 56-132 26-102 (185)
102 3egc_A Putative ribose operon 69.3 17 0.00057 30.7 8.0 64 59-130 7-75 (291)
103 3dbi_A Sugar-binding transcrip 69.1 31 0.0011 29.8 10.0 87 59-163 60-151 (338)
104 3h5o_A Transcriptional regulat 68.7 42 0.0014 29.0 10.8 63 59-129 61-128 (339)
105 2ioy_A Periplasmic sugar-bindi 68.5 24 0.00082 29.6 8.8 83 61-162 2-89 (283)
106 2amj_A Modulator of drug activ 68.2 6.8 0.00023 32.4 5.1 79 60-147 13-97 (204)
107 3kke_A LACI family transcripti 68.1 37 0.0013 28.8 10.1 83 60-163 15-102 (303)
108 2rgy_A Transcriptional regulat 68.0 33 0.0011 28.9 9.6 83 60-163 8-98 (290)
109 2vzf_A NADH-dependent FMN redu 67.1 7.8 0.00027 31.5 5.2 90 61-163 4-110 (197)
110 2q62_A ARSH; alpha/beta, flavo 66.8 13 0.00045 31.8 6.8 90 61-163 36-144 (247)
111 3bbl_A Regulatory protein of L 66.6 38 0.0013 28.4 9.8 86 60-163 4-95 (287)
112 8abp_A L-arabinose-binding pro 65.9 21 0.00071 30.2 8.0 83 60-162 2-89 (306)
113 3ff4_A Uncharacterized protein 65.3 6.3 0.00022 30.2 4.0 74 88-167 21-117 (122)
114 2rjo_A Twin-arginine transloca 65.0 25 0.00086 30.3 8.5 85 60-163 5-96 (332)
115 3kjx_A Transcriptional regulat 64.8 47 0.0016 28.7 10.3 82 59-161 67-153 (344)
116 2fep_A Catabolite control prot 64.8 45 0.0015 28.0 9.9 83 60-163 16-103 (289)
117 2fts_A Gephyrin; gephyrin, neu 64.8 11 0.00039 35.0 6.3 76 58-133 179-261 (419)
118 1jlj_A Gephyrin; globular alph 64.5 5 0.00017 33.2 3.5 71 56-131 10-90 (189)
119 3iwt_A 178AA long hypothetical 64.4 4.9 0.00017 32.5 3.4 42 90-131 45-93 (178)
120 2x7x_A Sensor protein; transfe 64.3 31 0.0011 29.6 8.9 83 60-162 6-94 (325)
121 2pbq_A Molybdenum cofactor bio 64.1 4.1 0.00014 33.3 2.8 68 59-131 4-80 (178)
122 3gv0_A Transcriptional regulat 63.9 28 0.00096 29.3 8.4 86 59-163 7-97 (288)
123 2vk2_A YTFQ, ABC transporter p 63.8 40 0.0014 28.6 9.4 83 61-162 3-90 (306)
124 2r47_A Uncharacterized protein 63.1 2.7 9.1E-05 33.9 1.4 41 118-163 83-125 (157)
125 3d8u_A PURR transcriptional re 62.0 32 0.0011 28.5 8.3 82 61-163 4-90 (275)
126 3brq_A HTH-type transcriptiona 61.9 68 0.0023 26.6 10.5 83 60-163 19-109 (296)
127 2fvy_A D-galactose-binding per 60.6 36 0.0012 28.6 8.5 84 61-163 3-92 (309)
128 3e3m_A Transcriptional regulat 60.1 45 0.0015 29.1 9.3 81 60-161 70-155 (355)
129 3e61_A Putative transcriptiona 59.8 22 0.00077 29.5 6.9 81 60-163 8-94 (277)
130 2iks_A DNA-binding transcripti 59.2 39 0.0013 28.4 8.5 63 59-129 19-86 (293)
131 2h3h_A Sugar ABC transporter, 58.7 67 0.0023 27.2 10.0 84 60-163 1-90 (313)
132 2g2c_A Putative molybdenum cof 58.6 3.9 0.00013 32.9 1.8 68 59-131 4-81 (167)
133 1sqs_A Conserved hypothetical 58.3 20 0.00069 30.0 6.3 58 61-126 3-86 (242)
134 3huu_A Transcription regulator 57.3 31 0.001 29.3 7.5 89 59-163 21-114 (305)
135 3rpe_A MDAB, modulator of drug 57.1 14 0.00049 31.1 5.1 82 60-150 26-113 (218)
136 2is8_A Molybdopterin biosynthe 57.0 5 0.00017 32.2 2.1 43 90-132 26-75 (164)
137 1ydg_A Trp repressor binding p 56.4 21 0.00073 28.9 6.0 45 82-126 19-85 (211)
138 1tjy_A Sugar transport protein 56.2 49 0.0017 28.4 8.7 84 61-163 4-93 (316)
139 1jx6_A LUXP protein; protein-l 56.1 75 0.0026 27.2 10.0 61 59-127 42-112 (342)
140 2qv7_A Diacylglycerol kinase D 56.0 43 0.0015 29.6 8.4 88 61-165 25-116 (337)
141 3afo_A NADH kinase POS5; alpha 55.7 2.8 9.5E-05 38.8 0.4 80 62-164 43-148 (388)
142 4fe7_A Xylose operon regulator 55.5 29 0.00098 31.3 7.3 82 58-163 23-105 (412)
143 2r4q_A Phosphotransferase syst 55.4 52 0.0018 24.5 7.4 78 60-150 3-102 (106)
144 2o20_A Catabolite control prot 54.9 95 0.0032 26.6 10.4 62 60-129 63-129 (332)
145 2fzv_A Putative arsenical resi 54.9 15 0.0005 32.3 4.9 91 60-163 59-169 (279)
146 3fvw_A Putative NAD(P)H-depend 54.8 15 0.00051 29.9 4.7 74 60-147 3-94 (192)
147 3c3k_A Alanine racemase; struc 54.7 73 0.0025 26.5 9.4 82 60-163 8-94 (285)
148 1uuy_A CNX1, molybdopterin bio 54.1 6.7 0.00023 31.5 2.4 68 59-132 4-84 (167)
149 2a5l_A Trp repressor binding p 53.9 39 0.0013 26.9 7.2 45 82-126 18-78 (200)
150 3o1i_D Periplasmic protein TOR 53.8 38 0.0013 28.4 7.4 82 60-161 5-93 (304)
151 3hcw_A Maltose operon transcri 53.4 33 0.0011 28.9 7.0 88 59-162 6-98 (295)
152 3qk7_A Transcriptional regulat 53.2 62 0.0021 27.2 8.8 87 60-163 6-96 (294)
153 3d02_A Putative LACI-type tran 52.0 74 0.0025 26.5 9.1 85 60-163 4-94 (303)
154 2r48_A Phosphotransferase syst 51.9 71 0.0024 23.8 8.1 78 60-150 3-102 (106)
155 1gud_A ALBP, D-allose-binding 51.8 61 0.0021 27.1 8.5 84 61-163 2-92 (288)
156 1t0b_A THUA-like protein; treh 51.6 56 0.0019 27.9 8.1 83 87-175 34-119 (252)
157 3miz_A Putative transcriptiona 51.3 43 0.0015 28.2 7.4 63 59-128 12-79 (301)
158 3k1y_A Oxidoreductase; structu 50.9 23 0.00078 29.0 5.3 92 58-164 10-127 (191)
159 2bon_A Lipid kinase; DAG kinas 50.5 43 0.0015 29.6 7.5 87 61-165 30-120 (332)
160 3hly_A Flavodoxin-like domain; 50.5 59 0.002 25.3 7.6 45 82-126 13-58 (161)
161 3brs_A Periplasmic binding pro 49.4 46 0.0016 27.7 7.2 64 60-129 5-75 (289)
162 3fni_A Putative diflavin flavo 48.4 55 0.0019 25.5 7.1 45 82-126 17-63 (159)
163 1wu2_A MOEA protein, molybdopt 48.3 15 0.0005 34.0 4.0 42 90-131 216-262 (396)
164 2hsg_A Glucose-resistance amyl 47.4 54 0.0018 28.1 7.5 63 59-129 59-126 (332)
165 3bil_A Probable LACI-family tr 45.7 58 0.002 28.3 7.5 61 61-129 67-132 (348)
166 2i2c_A Probable inorganic poly 45.6 16 0.00054 31.6 3.7 54 86-165 16-71 (272)
167 1dbq_A Purine repressor; trans 44.0 1.3E+02 0.0046 24.6 9.8 62 60-129 7-73 (289)
168 3clk_A Transcription regulator 43.5 50 0.0017 27.6 6.5 62 60-129 8-75 (290)
169 3mw8_A Uroporphyrinogen-III sy 43.3 32 0.0011 28.6 5.1 43 88-130 14-61 (240)
170 2qip_A Protein of unknown func 41.5 84 0.0029 24.6 7.2 64 88-163 64-141 (165)
171 3k9c_A Transcriptional regulat 41.0 56 0.0019 27.4 6.5 63 59-130 11-77 (289)
172 1d4a_A DT-diaphorase, quinone 40.9 52 0.0018 28.2 6.3 39 61-107 4-42 (273)
173 3f2v_A General stress protein 40.8 24 0.00083 28.9 3.9 56 61-126 3-65 (192)
174 3gbv_A Putative LACI-family tr 40.7 1.1E+02 0.0037 25.4 8.3 87 59-163 7-102 (304)
175 1t5b_A Acyl carrier protein ph 40.6 92 0.0032 24.5 7.5 40 61-107 3-44 (201)
176 3tem_A Ribosyldihydronicotinam 40.5 36 0.0012 28.5 5.1 39 61-107 3-41 (228)
177 3r6w_A FMN-dependent NADH-azor 40.4 50 0.0017 26.8 5.8 39 61-106 3-43 (212)
178 1eiw_A Hypothetical protein MT 40.2 26 0.00089 26.3 3.6 57 88-162 18-74 (111)
179 2kyr_A Fructose-like phosphotr 39.9 1.1E+02 0.0037 23.0 7.0 61 58-131 4-72 (111)
180 1rtt_A Conserved hypothetical 39.7 22 0.00075 28.5 3.4 89 61-163 8-116 (193)
181 3lkv_A Uncharacterized conserv 39.7 1.6E+02 0.0054 25.1 9.3 67 87-162 158-227 (302)
182 4a3s_A 6-phosphofructokinase; 39.6 31 0.001 30.8 4.6 41 122-169 5-45 (319)
183 1byk_A Protein (trehalose oper 39.2 69 0.0024 26.1 6.6 61 61-129 3-68 (255)
184 2zki_A 199AA long hypothetical 38.8 41 0.0014 26.8 5.0 43 83-126 17-77 (199)
185 3u7r_A NADPH-dependent FMN red 38.2 55 0.0019 26.6 5.7 50 113-163 61-112 (190)
186 2qh8_A Uncharacterized protein 37.3 1.5E+02 0.005 25.0 8.6 66 87-161 158-226 (302)
187 3hs3_A Ribose operon repressor 37.2 75 0.0026 26.4 6.6 61 59-127 9-75 (277)
188 3g85_A Transcriptional regulat 37.0 37 0.0013 28.3 4.6 63 59-128 10-77 (289)
189 3dzv_A 4-methyl-5-(beta-hydrox 35.3 2.2E+02 0.0074 24.6 9.7 79 57-159 14-92 (273)
190 1pfk_A Phosphofructokinase; tr 35.0 48 0.0016 29.6 5.1 41 122-169 6-46 (320)
191 1jye_A Lactose operon represso 34.9 1.5E+02 0.0051 25.6 8.5 61 60-128 61-127 (349)
192 1qpz_A PURA, protein (purine n 34.9 2.1E+02 0.0073 24.3 10.5 62 60-129 58-124 (340)
193 2ark_A Flavodoxin; FMN, struct 34.4 68 0.0023 25.4 5.6 42 82-126 17-59 (188)
194 1ccw_A Protein (glutamate muta 33.9 61 0.0021 24.7 5.0 61 87-150 19-82 (137)
195 4dik_A Flavoprotein; TM0755, e 33.6 1.7E+02 0.0059 26.7 8.9 77 83-160 279-359 (410)
196 1zxx_A 6-phosphofructokinase; 33.1 50 0.0017 29.5 4.9 41 122-169 5-45 (319)
197 2yxb_A Coenzyme B12-dependent 32.6 1.8E+02 0.006 22.7 8.8 85 59-159 17-104 (161)
198 2hpv_A FMN-dependent NADH-azor 32.6 59 0.002 26.1 5.0 41 61-107 3-45 (208)
199 3dzz_A Putative pyridoxal 5'-p 31.7 99 0.0034 26.7 6.7 62 89-150 121-193 (391)
200 2bwn_A 5-aminolevulinate synth 31.6 1.1E+02 0.0036 26.9 7.0 61 88-150 143-208 (401)
201 3lcm_A SMU.1420, putative oxid 31.5 53 0.0018 26.5 4.5 72 62-147 3-100 (196)
202 3p0r_A Azoreductase; structura 31.2 52 0.0018 27.0 4.5 42 59-106 4-47 (211)
203 1y81_A Conserved hypothetical 30.9 59 0.002 24.9 4.5 39 88-126 31-76 (138)
204 1jr2_A Uroporphyrinogen-III sy 30.8 48 0.0016 28.4 4.3 43 89-131 39-88 (286)
205 3ezx_A MMCP 1, monomethylamine 30.1 2E+02 0.0067 23.7 8.0 88 59-159 91-181 (215)
206 3jvd_A Transcriptional regulat 29.5 61 0.0021 28.0 4.9 61 59-128 63-128 (333)
207 4dq6_A Putative pyridoxal phos 28.9 1.2E+02 0.0041 26.2 6.8 62 89-150 126-197 (391)
208 1v8a_A Hydroxyethylthiazole ki 28.5 2.5E+02 0.0086 23.7 8.6 77 59-159 14-90 (265)
209 2e7j_A SEP-tRNA:Cys-tRNA synth 28.1 1.2E+02 0.0041 25.9 6.6 61 89-150 105-177 (371)
210 3s40_A Diacylglycerol kinase; 28.0 2E+02 0.007 24.7 8.0 95 62-173 10-108 (304)
211 1iuk_A Hypothetical protein TT 28.0 99 0.0034 23.6 5.4 77 88-169 30-132 (140)
212 4gi5_A Quinone reductase; prot 27.5 1.2E+02 0.0041 26.3 6.3 38 61-106 24-61 (280)
213 1d2f_A MALY protein; aminotran 27.4 2E+02 0.0067 24.9 8.0 59 89-150 123-195 (390)
214 3h14_A Aminotransferase, class 26.7 1.9E+02 0.0066 25.0 7.8 61 88-150 126-194 (391)
215 2h4a_A YRAM (HI1655); perplasm 26.6 64 0.0022 28.4 4.5 69 86-165 138-211 (325)
216 2dr1_A PH1308 protein, 386AA l 26.1 1.8E+02 0.0062 24.9 7.4 60 90-150 110-176 (386)
217 2h0a_A TTHA0807, transcription 26.0 40 0.0014 27.8 2.9 44 86-129 17-65 (276)
218 2l69_A Rossmann 2X3 fold prote 25.8 58 0.002 23.9 3.2 29 87-115 64-92 (134)
219 2gk3_A Putative cytoplasmic pr 25.8 27 0.00093 29.8 1.8 68 88-161 43-124 (256)
220 2hk9_A Shikimate dehydrogenase 25.6 1.2E+02 0.0042 25.6 6.1 55 61-126 13-72 (275)
221 1t0i_A YLR011WP; FMN binding p 25.5 94 0.0032 24.4 5.0 91 62-165 3-126 (191)
222 3hpd_A Hydroxyethylthiazole ki 25.0 1.1E+02 0.0038 26.4 5.6 61 90-159 30-90 (265)
223 2q9u_A A-type flavoprotein; fl 24.6 3.1E+02 0.011 24.2 8.9 46 82-127 269-315 (414)
224 3ihj_A Alanine aminotransferas 24.2 1.5E+02 0.0051 27.4 6.8 61 89-150 193-268 (498)
225 3fsl_A Aromatic-amino-acid ami 23.7 3.4E+02 0.012 23.3 8.9 63 88-150 132-206 (397)
226 3lab_A Putative KDPG (2-keto-3 23.6 2.3E+02 0.008 23.6 7.2 96 58-171 11-128 (217)
227 1o4s_A Aspartate aminotransfer 23.4 2.4E+02 0.0082 24.5 7.8 61 90-150 138-207 (389)
228 3ele_A Amino transferase; RER0 23.3 2.4E+02 0.0084 24.3 7.8 38 89-126 136-179 (398)
229 2qu7_A Putative transcriptiona 23.3 1.3E+02 0.0043 24.9 5.6 61 60-129 8-73 (288)
230 1nvt_A Shikimate 5'-dehydrogen 23.3 1.2E+02 0.004 25.9 5.5 55 61-126 12-71 (287)
231 3g0t_A Putative aminotransfera 23.2 1.3E+02 0.0044 26.6 5.9 60 88-150 144-215 (437)
232 3b6i_A Flavoprotein WRBA; flav 23.0 80 0.0027 24.8 4.1 44 82-126 14-75 (198)
233 3isl_A Purine catabolism prote 22.7 1.6E+02 0.0053 25.7 6.4 60 90-150 101-166 (416)
234 3f9t_A TDC, L-tyrosine decarbo 22.6 1.6E+02 0.0056 25.1 6.4 61 89-150 135-201 (397)
235 3gyb_A Transcriptional regulat 22.2 1.1E+02 0.0036 25.2 4.9 59 60-128 5-68 (280)
236 3re1_A Uroporphyrinogen-III sy 21.9 75 0.0026 26.9 3.9 81 88-176 27-115 (269)
237 1ehs_A STB, heat-stable entero 21.7 11 0.00038 23.1 -1.1 16 156-171 30-45 (48)
238 3qz6_A HPCH/HPAI aldolase; str 21.6 1.5E+02 0.005 25.3 5.7 46 112-163 158-215 (261)
239 4es6_A Uroporphyrinogen-III sy 21.5 88 0.003 26.1 4.2 81 88-176 19-107 (254)
240 2ohh_A Type A flavoprotein FPR 21.5 2.4E+02 0.0083 24.7 7.4 46 82-127 269-315 (404)
241 4hs4_A Chromate reductase; tri 21.4 82 0.0028 25.6 3.9 47 112-163 66-117 (199)
242 3inp_A D-ribulose-phosphate 3- 21.3 2.7E+02 0.0091 23.6 7.2 39 88-126 124-163 (246)
243 5nul_A Flavodoxin; electron tr 21.3 1.9E+02 0.0066 21.1 5.8 43 81-126 10-52 (138)
244 1j32_A Aspartate aminotransfer 21.2 2.9E+02 0.0098 23.7 7.8 62 89-150 126-196 (388)
245 1xi9_A Putative transaminase; 20.7 2.5E+02 0.0087 24.4 7.4 63 88-150 136-207 (406)
246 3op7_A Aminotransferase class 20.5 2.1E+02 0.0071 24.5 6.7 62 89-150 117-187 (375)
247 4e38_A Keto-hydroxyglutarate-a 20.3 2.6E+02 0.0089 23.5 6.9 91 60-168 34-140 (232)
248 3l8a_A METC, putative aminotra 20.2 2.2E+02 0.0074 25.1 6.8 62 89-150 155-227 (421)
249 3e2y_A Kynurenine-oxoglutarate 20.1 2.3E+02 0.0079 24.5 7.0 62 89-150 121-200 (410)
250 4e5v_A Putative THUA-like prot 20.1 2.6E+02 0.0087 24.1 7.0 75 83-165 18-96 (281)
No 1
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=100.00 E-value=4.9e-38 Score=289.01 Aligned_cols=229 Identities=33% Similarity=0.559 Sum_probs=162.1
Q ss_pred ccccCCCCCCCCCCCCCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCE
Q 023716 43 LSVLVPRCPVPDSKLNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNG 122 (278)
Q Consensus 43 ~~~~~~~~~~~~~~~~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDG 122 (278)
-++.--+|-.+++..+.||+|||++....... + .....+|+.++|+++|+++|+.+++++++.+.+.++++++.+||
T Consensus 13 ~~~~~~~~m~~~~~~~~~P~IGI~~~~~~~~~--~-~~~~~~~~~~~~~~~l~~~G~~~~vv~~~~~~~~i~~~l~~~dg 89 (315)
T 1l9x_A 13 GLVPRGSHMRPHGDTAKKPIIGILMQKCRNKV--M-KNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSING 89 (315)
T ss_dssp ---------------CCCCEEEEECEECCSHH--H-HTTCSEEEEHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHHSSE
T ss_pred CcccCccccCCCcccCCCCEEEEECCcccccc--c-ccCcceehHHHHHHHHHHCCCEEEEEecCCCHHHHHHHHhcCCE
Confidence 34445567788888899999999998643210 0 01236789999999999999999999998777778777889999
Q ss_pred EEEcCCC-CCCccchHH-HHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCcccccccccccccccccceecccccC
Q 023716 123 VLYTGGW-AKDGLYYAI-VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIE 200 (278)
Q Consensus 123 lIl~GG~-~~~p~~~~~-~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~ 200 (278)
||||||+ ++++..|+. ...+++.+++..++|+++||||||+|||+|++++||++.. .....++...++....... +
T Consensus 90 lil~GG~~~v~p~~~~~~~~~l~~~~~~~~~~g~~~PiLGIC~G~Qll~~a~GG~~~~-~~~~~~g~~~p~~~~~~~~-~ 167 (315)
T 1l9x_A 90 ILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECLL-TATDTVDVAMPLNFTGGQL-H 167 (315)
T ss_dssp EEECCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHHHHSSCCC-EEEEEEEEEECCEECSTTT-T
T ss_pred EEEeCCCcccChhhhhHHHHHHHHHHHHHHhcCCCceEEEEChHHHHHHHHhCCcccc-ccccccCCCCCeeeccCCC-C
Confidence 9999997 666664543 3467888887754555699999999999999999998432 2222222223444332222 6
Q ss_pred CcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCCCCcEEEEEEccCCC-CeEEEEEEeCCCcEEEEeecCCC
Q 023716 201 GTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKMLTTSADEDN-KVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 201 ~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~~~~vlA~s~D~~g-~~~ieaie~~~~pi~GvQfHPEk 278 (278)
+.+|+.+++++...++++.+++++|+++|.++++.....++++++++|++.| | .+++++++++++|++|||||||+
T Consensus 168 s~L~~~~~~~~~~~l~~~~~~~~~H~~~V~~~~~~~~~~l~~g~~v~A~s~d--g~ve~i~~i~~~~~~i~GVQfHPE~ 244 (315)
T 1l9x_A 168 SRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNTD--GKIEFISTMEGYKYPVYGVQWHPEK 244 (315)
T ss_dssp CSTTTTSCHHHHHHHHHSCCEEEEEEEECBHHHHHTCHHHHHHEEEEEEEES--SSCEEEEEEEESSSCEEEESSCTTH
T ss_pred ChHHHhcChhhhhhccccceEEEhhhhhcCccccccccccCCCCEEEEEcCC--CCEEEEEEeccCCCCEEEEEeCCCC
Confidence 7899888887766666666778899999988777655468889999999987 5 45677888888899999999995
No 2
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=100.00 E-value=2.8e-34 Score=256.31 Aligned_cols=193 Identities=22% Similarity=0.341 Sum_probs=128.4
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchH
Q 023716 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYA 137 (278)
Q Consensus 58 ~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~ 137 (278)
++||+|||++.......+.+ .+...+|+..+|+++|+++|+.++++|++.+.+ +++.++.+||||||||++++|..|+
T Consensus 2 ~~~p~IGi~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~aG~~pv~lp~~~~~~-~~~~l~~~DGlil~GG~~v~P~~yg 79 (254)
T 3fij_A 2 SLKPVIGITGNRLVKGVDVF-YGHRVTYTQQRYVDAIQKVGGFPIALPIDDPST-AVQAISLVDGLLLTGGQDITPQLYL 79 (254)
T ss_dssp -CCCEEEEEC-------------------CHHHHHHHHHHTCEEEEECCCCGGG-HHHHHHTCSEEEECCCSCCCGGGGT
T ss_pred CCCCEEEEeCCccccccccc-CCcchhhhhHHHHHHHHHCCCEEEEEeCCCchH-HHHHHhhCCEEEECCCCCCChhhcC
Confidence 36899999998643322111 234678999999999999999999999987666 7888899999999999987776653
Q ss_pred H----------------HHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCcc--cccc---cccccccccccceecc
Q 023716 138 I----------------VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDK--NILE---SFNAADQASTLQFMEN 196 (278)
Q Consensus 138 ~----------------~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~~--~il~---~~~~~~~~~~l~~~~~ 196 (278)
+ ...+++++++++ +||||||+|||+|++++||+. ++.. ....|.+.....+..+
T Consensus 80 ~~~~~~~~~~~~~rd~~~~~lir~a~~~~-----~PiLGIC~G~Qll~~a~Gg~v~~~~~~~~~~~~~h~~~~~~~~g~~ 154 (254)
T 3fij_A 80 EEPSQEIGAYFPPRDSYEIALVRAALDAG-----KPIFAICRGMQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSH 154 (254)
T ss_dssp CCCCTTCCCCCHHHHHHHHHHHHHHHHTT-----CCEEEETHHHHHHHHHTTCCEESSGGGSSSCCCCCBCCSCTTSCCE
T ss_pred CccCcccCCcChhhhHHHHHHHHHHHHcC-----CCEEEECHHHHHHHHHhCCceecccccccCccccccCCCCCccceE
Confidence 2 347888888888 999999999999999999983 1100 0011211111111111
Q ss_pred -c--ccCCcccccCchhHHHhhCCccEEEEE-EeeecCccchhhhccCCCCcEEEEEEccCCCCeEEEEEEeC-CCc-EE
Q 023716 197 -T--SIEGTVFQRFPPKLIKKLSTDCLVMQN-HHYGISPETLRKNLDLSRFFKMLTTSADEDNKVYVSTVQAY-DYP-VT 270 (278)
Q Consensus 197 -~--~~~~~lf~~~p~~l~~~l~~~~~~~~~-H~~~i~~~~~~~~~~L~~~~~vlA~s~D~~g~~~ieaie~~-~~p-i~ 270 (278)
+ ..++.+|+ .+++ ...+++ |+ +.+.+++++++++|++.| | .|++|+.+ ++| ++
T Consensus 155 ~v~~~~~s~l~~--------~~~~-~~~v~~~H~--------~~v~~l~~g~~v~a~s~d--g--~ieai~~~~~~~~~~ 213 (254)
T 3fij_A 155 TIDIEPTSELAK--------HHPN-KKLVNSLHH--------QFIKKLAPSFKVTARTAD--G--MIEAVEGDNLPSWYL 213 (254)
T ss_dssp EEEECTTSSGGG--------TCCT-TEEECCBCS--------CEESSCCSSEEEEEEETT--C--CEEEEEESSCSSCEE
T ss_pred EEEeCCCChHHH--------hcCC-cEEEEEecc--------chhhccCCCcEEEEEeCC--C--cEEEEEecCCCCeEE
Confidence 1 11333433 3333 344554 55 556679999999999986 7 79999999 887 89
Q ss_pred EEeecCCC
Q 023716 271 AFQWHPEV 278 (278)
Q Consensus 271 GvQfHPEk 278 (278)
|||||||+
T Consensus 214 gvQfHPE~ 221 (254)
T 3fij_A 214 GVQWHPEL 221 (254)
T ss_dssp EESSCGGG
T ss_pred EEEcCCcc
Confidence 99999995
No 3
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=99.94 E-value=3.7e-27 Score=200.72 Aligned_cols=156 Identities=21% Similarity=0.325 Sum_probs=105.8
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHH
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFEL 167 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~Ql 167 (278)
.+++++++++|+++++++++.+.+++.+ ..+||||||||+ ++...+...++++.+.+.+ +|+||||+|||+
T Consensus 14 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~--~~~dglil~Gg~--~~~~~~~~~~~i~~~~~~~-----~PilGIC~G~Q~ 84 (189)
T 1wl8_A 14 HRIWRTLRYLGVETKIIPNTTPLEEIKA--MNPKGIIFSGGP--SLENTGNCEKVLEHYDEFN-----VPILGICLGHQL 84 (189)
T ss_dssp HHHHHHHHHTTCEEEEEETTCCHHHHHH--TCCSEEEECCCS--CTTCCTTHHHHHHTGGGTC-----SCEEEETHHHHH
T ss_pred HHHHHHHHHCCCeEEEEECCCChHHhcc--cCCCEEEECCCC--ChhhhhhHHHHHHHHhhCC-----CeEEEEcHHHHH
Confidence 5789999999999999998765443332 369999999998 3333333345665554555 999999999999
Q ss_pred HHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCCCCcEEE
Q 023716 168 LTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKML 247 (278)
Q Consensus 168 L~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~~~~vl 247 (278)
|+.++||+.. .....+......... . .+.+|..++. ...++++|+ +.+.+++++++++
T Consensus 85 l~~~~gg~v~--~~~~~~~G~~~~~~~---~-~~~l~~~~~~--------~~~~~~~h~--------~~v~~l~~~~~vl 142 (189)
T 1wl8_A 85 IAKFFGGKVG--RGEKAEYSLVEIEII---D-EXEIFKGLPK--------RLKVWESHM--------DEVKELPPKFKIL 142 (189)
T ss_dssp HHHHHTCEEE--ECSCCSCEEEEEEES---C-C--CCTTSCS--------EEEEEECCS--------EEEEECCTTEEEE
T ss_pred HHHHhCCcee--cCCCcccCceeEEEe---c-CchHHhCCCC--------ceEEEEEee--------eehhhCCCCcEEE
Confidence 9999999832 111111111111111 1 3455544432 223444555 3445789999999
Q ss_pred EEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 248 TTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 248 A~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
|++.| | .+++++++++|++|+|||||+
T Consensus 143 a~s~~--g--~i~a~~~~~~~~~gvQfHPE~ 169 (189)
T 1wl8_A 143 ARSET--C--PIEAMKHEELPIYGVQFHPEV 169 (189)
T ss_dssp EEESS--C--SCSEEEESSSCEEEESSCTTS
T ss_pred EEcCC--C--CEEEEEeCCceEEEEecCCCc
Confidence 99976 7 799999988899999999996
No 4
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=99.94 E-value=2.7e-27 Score=205.80 Aligned_cols=153 Identities=20% Similarity=0.305 Sum_probs=107.2
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCC-CCCCccchHH--HHHHHHHHHHhcCCCCCCcEEEEech
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGG-WAKDGLYYAI--VEKVFKKILEKNDAGDHFPLYAHCLG 164 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG-~~~~p~~~~~--~~~li~~al~~~~~g~~~PVLGIClG 164 (278)
.+|+++|+++|+.+++++++.+.++ ++.+|||||||| +.. .++. ...+.+++++++ +|+||||+|
T Consensus 27 ~~~~~~l~~~G~~~~vv~~~~~~~~----l~~~DglIl~GG~p~~---~~~~~~~~~l~~~~~~~~-----~PiLGIC~G 94 (212)
T 2a9v_A 27 HREWRVLRELGVDTKIVPNDIDSSE----LDGLDGLVLSGGAPNI---DEELDKLGSVGKYIDDHN-----YPILGICVG 94 (212)
T ss_dssp CHHHHHHHHTTCBCCEEETTSCGGG----GTTCSEEEEEEECSCG---GGTGGGHHHHHHHHHHCC-----SCEEEETHH
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHH----HhCCCEEEECCCCCCC---CcccccchhHHHHHHhCC-----CCEEEEChH
Confidence 4799999999999999998764432 455999999999 441 1111 234555566666 999999999
Q ss_pred HHHHHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCCCCc
Q 023716 165 FELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFF 244 (278)
Q Consensus 165 ~QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~~~ 244 (278)
||+|+.++||+.. .....+.....+.++ . ++.+|+.++ +...++++|++. +.++++++
T Consensus 95 ~Qll~~~lGg~v~--~~~~~~~G~~~v~~~---~-~~~l~~~~~--------~~~~v~~~H~~~--------v~~l~~~~ 152 (212)
T 2a9v_A 95 AQFIALHFGASVV--KAKHPEFGKTKVSVM---H-SENIFGGLP--------SEITVWENHNDE--------IINLPDDF 152 (212)
T ss_dssp HHHHHHHTTCEEE--EEEEEEEEEEEEEES---C-CCGGGTTCC--------SEEEEEEEEEEE--------EESCCTTE
T ss_pred HHHHHHHhCCEEE--cCCCcccCceeeEEC---C-CChhHhcCC--------CceEEEeEhhhh--------HhhCCCCc
Confidence 9999999999832 111111111122221 1 344554443 233567788864 45689999
Q ss_pred EEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 245 KMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 245 ~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
+++|++.| | .++++++++.+++|||||||+
T Consensus 153 ~vlA~s~d--~--~i~ai~~~~~~i~gvQfHPE~ 182 (212)
T 2a9v_A 153 TLAASSAT--C--QVQGFYHKTRPIYATQFHPEV 182 (212)
T ss_dssp EEEEECSS--C--SCSEEEESSSSEEEESSCTTS
T ss_pred EEEEEeCC--C--CEEEEEECCCCEEEEEeCCCC
Confidence 99999976 6 699999988899999999996
No 5
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=99.94 E-value=5.7e-27 Score=204.68 Aligned_cols=169 Identities=15% Similarity=0.209 Sum_probs=111.9
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHHH
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIV 139 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~ 139 (278)
.+.|+|+.... +|+ .+++++++++|++++++|++.+.+++.. +.+||||||||++. .+....
T Consensus 24 ~~~I~iiD~g~-------------~~~-~~i~~~l~~~G~~~~vv~~~~~~~~l~~--~~~dglil~Gg~~~--~~~~~~ 85 (218)
T 2vpi_A 24 EGAVVILDAGA-------------QYG-KVIDRRVRELFVQSEIFPLETPAFAIKE--QGFRAIIISGGPNS--VYAEDA 85 (218)
T ss_dssp TTCEEEEECST-------------TTT-HHHHHHHHHTTCCEEEECTTCCHHHHHH--HTCSEEEEEC-----------C
T ss_pred CCeEEEEECCC-------------chH-HHHHHHHHHCCCEEEEEECCCChHHHhh--cCCCEEEECCCCcc--cccccc
Confidence 46799986532 222 4678999999999999999877665543 57999999999862 111111
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCcc
Q 023716 140 EKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDC 219 (278)
Q Consensus 140 ~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~ 219 (278)
..+.+.+++++ +||||||+|||+|+.++||+.. .....+....++.++ . ++.+|+.++ +..
T Consensus 86 ~~~~~~~~~~~-----~PilGIC~G~Qll~~~~GG~v~--~~~~~~~G~~~v~~~---~-~~~l~~~l~--------~~~ 146 (218)
T 2vpi_A 86 PWFDPAIFTIG-----KPVLGICYGMQMMNKVFGGTVH--KKSVREDGVFNISVD---N-TCSLFRGLQ--------KEE 146 (218)
T ss_dssp CCCCGGGGTSS-----CCEEEETHHHHHHHHHTTCCEE--EEEECSCEEEEEEEC---T-TSGGGTTCC--------SEE
T ss_pred hhHHHHHHHcC-----CCEEEEcHHHHHHHHHhCCceE--eCCCCcccEEEEEEc---c-CChhHhcCC--------CCc
Confidence 11222333444 9999999999999999999832 111112222222221 1 455555443 333
Q ss_pred EEEEEEeeecCccchhhhccCCCCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 220 LVMQNHHYGISPETLRKNLDLSRFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 220 ~~~~~H~~~i~~~~~~~~~~L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
.++++|++++ ..++++++++|++ | + ++++|++++.|++|+|||||+
T Consensus 147 ~v~~~H~~~v--------~~l~~~~~vlA~s-~--~--~i~ai~~~~~~i~gvQfHPE~ 192 (218)
T 2vpi_A 147 VVLLTHGDSV--------DKVADGFKVVARS-G--N--IVAGIANESKKLYGAQFHPEV 192 (218)
T ss_dssp EEEECSEEEE--------SSCCTTCEEEEEE-T--T--EEEEEEETTTTEEEESSCTTS
T ss_pred EEeehhhhHh--------hhcCCCCEEEEEc-C--C--eEEEEEECCCCEEEEEcCCCC
Confidence 5667788654 4688999999999 5 6 899999988999999999996
No 6
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=99.94 E-value=4.6e-26 Score=195.19 Aligned_cols=158 Identities=15% Similarity=0.221 Sum_probs=107.1
Q ss_pred HHHHHHHHHcCCeEEEEeCCC-ChhhHHHhcccCCEEEEcCCCCCCccc--hHHHHHHHHHHHHhcCCCCCCcEEEEech
Q 023716 88 ASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLY--YAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~-~~~~l~~~l~~iDGlIl~GG~~~~p~~--~~~~~~li~~al~~~~~g~~~PVLGIClG 164 (278)
..++++|+++|++++++++++ +.+++.. .++|||||+||++..... +....++++++ +.+ +|+||||+|
T Consensus 15 ~~~~~~l~~~G~~~~v~~~~~~~~~~~~~--~~~dglil~gG~~~~~~~~~~~~~~~~i~~~-~~~-----~PvLGIC~G 86 (195)
T 1qdl_B 15 YNIAQIVGELGSYPIVIRNDEISIKGIER--IDPDRLIISPGPGTPEKREDIGVSLDVIKYL-GKR-----TPILGVCLG 86 (195)
T ss_dssp HHHHHHHHHTTCEEEEEETTTSCHHHHHH--HCCSEEEECCCSSCTTSHHHHTTHHHHHHHH-TTT-----SCEEEETHH
T ss_pred HHHHHHHHhCCCEEEEEeCCCCCHHHHhh--CCCCEEEECCCCCChhhhhhhhHHHHHHHHh-cCC-----CcEEEEehH
Confidence 478899999999999999863 2223322 169999999987632111 11123556653 455 999999999
Q ss_pred HHHHHHHHhCcccccccccccccccccceecccccCC--cccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCCC
Q 023716 165 FELLTMIISKDKNILESFNAADQASTLQFMENTSIEG--TVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSR 242 (278)
Q Consensus 165 ~QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~--~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~ 242 (278)
||+|+.++||+..-.. ...+....++.++ . ++ .+|+.++ +...++++|++.+ ..+++
T Consensus 87 ~QlL~~~~gg~v~~~~-~~~~g~~~~v~~~---~-~~~~~l~~~~~--------~~~~v~~~H~~~v--------~~l~~ 145 (195)
T 1qdl_B 87 HQAIGYAFGAKIRRAR-KVFHGKISNIILV---N-NSPLSLYYGIA--------KEFKATRYHSLVV--------DEVHR 145 (195)
T ss_dssp HHHHHHHTTCEEEEEE-EEEEEEEEEEEEC---C-SSCCSTTTTCC--------SEEEEEEEEEEEE--------ECCCT
T ss_pred HHHHHHHhCCEEeccC-CCcCCCceEEEEC---C-CCHhHHHhcCC--------CceEEeccccchh--------hhCCC
Confidence 9999999999832111 1112222222221 1 33 5655443 2346778898754 46889
Q ss_pred CcEEEEEE-ccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 243 FFKMLTTS-ADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 243 ~~~vlA~s-~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
+++++|++ .| | .+++++++++|++|+|||||+
T Consensus 146 ~~~vla~s~~~--g--~i~a~~~~~~~~~gvQfHPE~ 178 (195)
T 1qdl_B 146 PLIVDAISAED--N--EIMAIHHEEYPIYGVQFHPES 178 (195)
T ss_dssp TEEEEEEESSS--C--CEEEEEESSSSEEEESSBTTS
T ss_pred CcEEEEEECCC--C--cEEEEEeCCCCEEEEecCCCC
Confidence 99999999 66 7 699999988899999999996
No 7
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=99.94 E-value=7.8e-26 Score=193.25 Aligned_cols=158 Identities=15% Similarity=0.217 Sum_probs=105.2
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCChhhHHHhccc--CCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEech
Q 023716 87 AASYVKFVESAGARVIPLIYNEPEDVLFEKLEL--VNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (278)
Q Consensus 87 ~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~--iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG 164 (278)
..+++++|++.|+++++++++.+.+++.+.+.. .+++||+||+.. +.-.+....+++. ++++ +||||||+|
T Consensus 13 ~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~~~~~iil~gGpg~-~~~~~~~~~l~~~-~~~~-----~PilGIC~G 85 (192)
T 1i1q_B 13 TWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSPGPGV-PSEAGCMPELLTR-LRGK-----LPIIGICLG 85 (192)
T ss_dssp HHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTCSSEEEEECCCSSC-GGGSTTHHHHHHH-HBTT-----BCEEEETHH
T ss_pred HHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhhccCCeEEECCCCcC-chhCchHHHHHHH-HhcC-----CCEEEECcC
Confidence 467899999999999999988665666555443 457899888773 2111223355553 4555 999999999
Q ss_pred HHHHHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCCCCc
Q 023716 165 FELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFF 244 (278)
Q Consensus 165 ~QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~~~ 244 (278)
||+|+.++||+..-... ..+..... ..+ . .+.+|.+++ +...++++|++. +..+|+++
T Consensus 86 ~Qll~~~~Gg~v~~~~~-~~~g~~~~---~~~-~-~~~l~~~~~--------~~~~v~~~H~~~--------v~~lp~~~ 143 (192)
T 1i1q_B 86 HQAIVEAYGGYVGQAGE-ILHGKATS---IEH-D-GQAMFAGLA--------NPLPVARYHSLV--------GSNVPAGL 143 (192)
T ss_dssp HHHHHHHTSCCCCC----CCSSEEEE---EEE-C-CCGGGTTSC--------SSEEEEECCC-----------CCCCTTC
T ss_pred hHHHHHHhCCEEEeCCC-cEecceeE---Eec-C-CChHHhcCC--------CCcEEEechhhH--------hhhCCCcc
Confidence 99999999997421111 01110000 011 1 344554443 344677788863 45789999
Q ss_pred EEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 245 KMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 245 ~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
+++|.+ | + ++++++++++|++|+|||||+
T Consensus 144 ~v~a~~-~--~--~~~ai~~~~~~~~gvQfHPE~ 172 (192)
T 1i1q_B 144 TINAHF-N--G--MVMAVRHDADRVCGFQFHPES 172 (192)
T ss_dssp EEEEEE-T--T--EEEEEEETTTTEEEESSBTTS
T ss_pred EEEECC-C--C--cEEEEEECCCCEEEEEccCcc
Confidence 999954 4 6 899999988999999999996
No 8
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=99.92 E-value=1.3e-24 Score=203.59 Aligned_cols=154 Identities=17% Similarity=0.312 Sum_probs=108.5
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHH
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFEL 167 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~Ql 167 (278)
.+++++|+++|++++++|++.+.+++.. ..+|||||+||+.. +.......++++++++++ +||||||+|||+
T Consensus 202 ~ni~r~L~~~G~~v~vvp~~~~~e~i~~--~~~DGliLsGGPgd-p~~~~~~~~~Ir~~~~~~-----~PILGIClG~QL 273 (379)
T 1a9x_B 202 RNILRMLVDRGCRLTIVPAQTSAEDVLK--MNPDGIFLSNGPGD-PAPCDYAITAIQKFLETD-----IPVFGICLGHQL 273 (379)
T ss_dssp HHHHHHHHHTTEEEEEEETTCCHHHHHT--TCCSEEEECCCSBC-STTCHHHHHHHHHHTTSC-----CCEEEETHHHHH
T ss_pred HHHHHHHHHCCCEEEEEeccCCHHHHhh--cCCCEEEEeCCCCC-hHHHHHHHHHHHHHHHcC-----CCEEEECchHHH
Confidence 4689999999999999999877655542 36999999999873 332334457788888777 999999999999
Q ss_pred HHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCCCCcEEE
Q 023716 168 LTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKML 247 (278)
Q Consensus 168 L~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~~~~vl 247 (278)
|+.++||+..-+ .+..+....++. .++. +.-.++.++|++.|.++ +||++++++
T Consensus 274 La~A~GG~v~k~-~~gh~g~n~pv~-------------~~~~------g~v~its~~H~~aV~~~------~Lp~~~~v~ 327 (379)
T 1a9x_B 274 LALASGAKTVKM-KFGHHGGNHPVK-------------DVEK------NVVMITAQNHGFAVDEA------TLPANLRVT 327 (379)
T ss_dssp HHHHTTCCEEEE-EEEEEEEEEEEE-------------ETTT------TEEEEEEEEEEEEECST------TCCTTEEEE
T ss_pred HHHHhCcEEEec-ccccccCceeeE-------------ecCC------CcEEEEecCccceEecc------cCCCCeEEE
Confidence 999999984211 111111111110 0000 00113456899877432 478899999
Q ss_pred EEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 248 TTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 248 A~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
+++.+ || .+++++++++|++|||||||+
T Consensus 328 a~s~~-Dg--~ieai~~~~~pi~gVQFHPE~ 355 (379)
T 1a9x_B 328 HKSLF-DG--TLQGIHRTDKPAFSFQGNPEA 355 (379)
T ss_dssp EEETT-TC--CEEEEEESSSSEEEESSCTTC
T ss_pred EEeCC-CC--cEEEEEECCCCEEEEEeCCcC
Confidence 99832 27 699999999999999999995
No 9
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=99.92 E-value=6.1e-25 Score=194.24 Aligned_cols=155 Identities=21% Similarity=0.211 Sum_probs=108.2
Q ss_pred HHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCC--C---ccchHHHHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 89 SYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK--D---GLYYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 89 syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~--~---p~~~~~~~~li~~al~~~~~g~~~PVLGICl 163 (278)
++.+++++.|..+++++++.. +.+++.++.+||||||||+.. + ..+.....++++++++++ +||||||+
T Consensus 28 ~i~~~l~~~G~~v~v~~~~~~-~~~~~~l~~~Dglil~GG~~~~~~~~~~~~l~~~~~~i~~~~~~~-----~PiLGIC~ 101 (239)
T 1o1y_A 28 MMEDIFREKNWSFDYLDTPKG-EKLERPLEEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEEILKKE-----IPFLGICL 101 (239)
T ss_dssp HHHHHHHHTTCEEEEECGGGT-CCCSSCGGGCSEEEECCCSCCTTCTTTCTHHHHHHHHHHHHHHHT-----CCEEEETH
T ss_pred HHHHHHHhCCCcEEEeCCcCc-cccccchhcCCEEEECCCCccccCCccChhHHHHHHHHHHHHHCC-----CCEEEEch
Confidence 577899999999888877532 234445778999999999742 1 122234558888888888 99999999
Q ss_pred hHHHHHHHHhCccccccccc-ccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCCC
Q 023716 164 GFELLTMIISKDKNILESFN-AADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSR 242 (278)
Q Consensus 164 G~QlL~~~~Gg~~~il~~~~-~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~ 242 (278)
|||+|+.++||+.. .... .+....++... . .+.+|+.++ +...++++|++.+ ++|+
T Consensus 102 G~QlL~~alGG~v~--~~~~g~~~G~~~v~~~---~-~~~l~~~~~--------~~~~~~~~H~~~v---------~lp~ 158 (239)
T 1o1y_A 102 GSQMLAKVLGASVY--RGKNGEEIGWYFVEKV---S-DNKFFREFP--------DRLRVFQWHGDTF---------DLPR 158 (239)
T ss_dssp HHHHHHHHTTCCEE--ECTTCCEEEEEEEEEC---C-CCGGGTTSC--------SEEEEEEEESEEE---------CCCT
T ss_pred hHHHHHHHcCCeEe--cCCCCCccccEEEEEC---C-CCchHHhCC--------CCceeEeecCCcc---------ccCC
Confidence 99999999999832 1111 11112222211 1 445555443 3346777888743 5789
Q ss_pred CcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 243 FFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 243 ~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
+++++|++.| + .++++++.+ ++|+|||||+
T Consensus 159 ~~~vlA~s~~--~--~iea~~~~~--i~gvQfHPE~ 188 (239)
T 1o1y_A 159 RATRVFTSEK--Y--ENQGFVYGK--AVGLQFHIEV 188 (239)
T ss_dssp TCEEEEECSS--C--SCSEEEETT--EEEESSBSSC
T ss_pred CCEEEEEcCC--C--CEEEEEECC--EEEEEeCccC
Confidence 9999999876 5 478999865 9999999996
No 10
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=99.92 E-value=2.1e-25 Score=217.66 Aligned_cols=180 Identities=13% Similarity=0.172 Sum_probs=120.0
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchH
Q 023716 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYA 137 (278)
Q Consensus 58 ~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~ 137 (278)
+.++.|+|+... .+|. .++.++|+++|+.+.++|++.+.+++.+. .+||||||||++.. |..
T Consensus 5 ~~~~~IlIlD~g-------------~~~~-~~i~r~lr~~G~~~~i~p~~~~~~~i~~~--~~dgiILsGGp~s~--~~~ 66 (525)
T 1gpm_A 5 IHKHRILILDFG-------------SQYT-QLVARRVRELGVYCELWAWDVTEAQIRDF--NPSGIILSGGPEST--TEE 66 (525)
T ss_dssp TTSSEEEEEECS-------------CTTH-HHHHHHHHHTTCEEEEEESCCCHHHHHHH--CCSEEEECCCSSCT--TST
T ss_pred CCCCEEEEEECC-------------CccH-HHHHHHHHHCCCEEEEEECCCCHHHHhcc--CCCEEEECCcCccc--ccc
Confidence 345789998643 2333 57889999999999999998877766654 57999999998621 100
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCC
Q 023716 138 IVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLST 217 (278)
Q Consensus 138 ~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~ 217 (278)
....+.+.+++.+ +||||||+|||+|+.++||++.-.. ..+.+...+.+. . ++.+|++++..+......
T Consensus 67 ~~~~~~~~~~~~g-----~PvLGIC~G~Qlla~~~GG~V~~~~--~~e~G~~~v~~~---~-~~~L~~~l~~~~~~~~~~ 135 (525)
T 1gpm_A 67 NSPRAPQYVFEAG-----VPVFGVCYGMQTMAMQLGGHVEASN--EREFGYAQVEVV---N-DSALVRGIEDALTADGKP 135 (525)
T ss_dssp TCCCCCGGGGTSS-----SCEEEETHHHHHHHHHHTCEEECCS--SCEEEEEEEEEC---S-CCTTTTTCCSEECTTSCE
T ss_pred CCcchHHHHHHCC-----CCEEEEChHHHHHHHHcCCEEEeCC--CcccceEEEEeC---C-CCHhhccCcccccccccc
Confidence 0001122334455 9999999999999999999842111 111111222221 1 345666654321111111
Q ss_pred ccEEEEEEeeecCccchhhhccCCCCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 218 DCLVMQNHHYGISPETLRKNLDLSRFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 218 ~~~~~~~H~~~i~~~~~~~~~~L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
...++++|++ .+..+|++|+++|++.| + .++++++++.++||+|||||+
T Consensus 136 ~~~v~~~H~~--------~V~~lp~g~~v~A~s~~--~--~i~ai~~~~~~i~gvQFHPE~ 184 (525)
T 1gpm_A 136 LLDVWMSHGD--------KVTAIPSDFITVASTES--C--PFAIMANEEKRFYGVQFHPEV 184 (525)
T ss_dssp EEEEEEEECS--------EEEECCTTCEEEEECSS--C--SCSEEEETTTTEEEESBCTTS
T ss_pred ceEEEEEccc--------eeeeCCCCCEEEEECCC--C--CEEEEEECCCCEEEEecCCCC
Confidence 3456778885 44578999999999976 6 689999988899999999996
No 11
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=99.91 E-value=2.4e-24 Score=191.76 Aligned_cols=159 Identities=14% Similarity=0.112 Sum_probs=110.1
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCC--C-ccchHHHHHHHHHHHHhcCCCCCCcEEEEech
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK--D-GLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~--~-p~~~~~~~~li~~al~~~~~g~~~PVLGIClG 164 (278)
.++.+++++.|..+.++.....+ .++..++.+|||||+||+.. + ..+.....++++.+++.+ +||||||+|
T Consensus 18 ~~i~~~l~~~G~~v~v~~~~~~~-~~p~~~~~~d~lIl~GGp~~~~d~~~~~~~~~~~i~~~~~~~-----~PvlGIC~G 91 (250)
T 3m3p_A 18 GHFGDFLAGEHIPFQVLRMDRSD-PLPAEIRDCSGLAMMGGPMSANDDLPWMPTLLALIRDAVAQR-----VPVIGHCLG 91 (250)
T ss_dssp HHHHHHHHHTTCCEEEEEGGGTC-CCCSCGGGSSEEEECCCSSCTTSCCTTHHHHHHHHHHHHHHT-----CCEEEETHH
T ss_pred HHHHHHHHHCCCeEEEEeccCCC-cCcCccccCCEEEECCCCCcccccchHHHHHHHHHHHHHHcC-----CCEEEECHH
Confidence 56788999999999888754321 12223678999999999862 1 234455568899899888 999999999
Q ss_pred HHHHHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCCCCc
Q 023716 165 FELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFF 244 (278)
Q Consensus 165 ~QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~~~ 244 (278)
+|+|+.++||++. .....+.+..++..+.... .+.+| .+.+...++++|++. + .+|+++
T Consensus 92 ~Qll~~~lGG~V~--~~~~~e~G~~~v~~~~~~~-~~~l~---------g~~~~~~v~~~H~~~--------v-~lp~~~ 150 (250)
T 3m3p_A 92 GQLLAKAMGGEVT--DSPHAEIGWVRAWPQHVPQ-ALEWL---------GTWDELELFEWHYQT--------F-SIPPGA 150 (250)
T ss_dssp HHHHHHHTTCCEE--EEEEEEEEEEEEEECSSHH-HHHHH---------SCSSCEEEEEEEEEE--------E-CCCTTE
T ss_pred HHHHHHHhCCEEE--eCCCCceeeEEEEEecCCC-Ccccc---------cCCCccEEEEEccce--------e-ecCCCC
Confidence 9999999999842 1111122222222221100 12233 233444677889863 3 689999
Q ss_pred EEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 245 KMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 245 ~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
+++|++.+ + .+++++..+ +++|+|||||+
T Consensus 151 ~vlA~s~~--~--~~~a~~~~~-~~~GvQfHPE~ 179 (250)
T 3m3p_A 151 VHILRSEH--C--ANQAYVLDD-LHIGFQCHIEM 179 (250)
T ss_dssp EEEEEETT--E--EEEEEEETT-TEEEESSCTTC
T ss_pred EEEEEeCC--C--CEEEEEECC-eeEEEEeCCcC
Confidence 99999976 6 789999866 69999999996
No 12
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=99.91 E-value=4.4e-24 Score=192.34 Aligned_cols=201 Identities=17% Similarity=0.188 Sum_probs=118.1
Q ss_pred cEEEEeCCCC-CCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCCh--hh----HHHhcccCCEEEEcCCCCCCc
Q 023716 61 PVIGIVTHPG-DGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE--DV----LFEKLELVNGVLYTGGWAKDG 133 (278)
Q Consensus 61 PvIGIl~~~~-~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~--~~----l~~~l~~iDGlIl~GG~~~~p 133 (278)
+.|||++..+ .- .++..|+. .++..+....|+++.++..+... +. +.+.++.+||||||||+.. +
T Consensus 9 ~~Iaivg~y~~~~------~dny~S~~-~aL~~~g~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~dgiil~GG~~~-~ 80 (273)
T 2w7t_A 9 VRIAFVGKYLQDA------GDTYFSVL-QCFEHCQIALQVRLDILYVDSEELEGPNADEARKALLGCDGIFVPGGFGN-R 80 (273)
T ss_dssp EEEEEEECCHHHH------TTTTHHHH-HHHHHHHHHHTCCEEEEEEEGGGGSSTTTHHHHHHHHTCSEEEECCCCTT-T
T ss_pred CEEEEEeCCCcCC------chHHHHHH-HHHHHHHHhcCCceEEeccChhhcccccchhHHHHHhhCCEEEecCCCCC-c
Confidence 7999996431 00 12223332 23444445566778777665422 01 4356778999999999763 2
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCccccccccc-cc---ccccc-cceecc-c-ccCC-----
Q 023716 134 LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFN-AA---DQAST-LQFMEN-T-SIEG----- 201 (278)
Q Consensus 134 ~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~~~il~~~~-~~---~~~~~-l~~~~~-~-~~~~----- 201 (278)
.. .....+++++++.+ +||||||+|||+|++++||+..-++... .+ +...+ +.+..| . ..++
T Consensus 81 ~~-~~~~~~i~~~~~~~-----~PilGIC~G~Qll~~a~Gg~v~~~~~~~s~E~~~~~~~~~l~~~~~~~~~~~~~~~~g 154 (273)
T 2w7t_A 81 GV-DGKCAAAQVARMNN-----IPYFGVXLGMQVAVIELSRNVVGWSDANSEEFNKESTHQVVRIMDCDRNKMGANMHLG 154 (273)
T ss_dssp TH-HHHHHHHHHHHHHT-----CCEEEETHHHHHHHHHHHHHTTCCTTCEETTTCTTCSCEEEECCGGGBCSSCBCCEEE
T ss_pred Cc-hhHHHHHHHHHHCC-----CcEEEECcCHHHHHHHHhCccccccCCchhhcccccCCCceeeccccccccCCccccc
Confidence 22 23347888888888 9999999999999999999842111111 00 00001 000001 0 0000
Q ss_pred --cccccC-chhHHHhhCCccEEE--EEEeeecCccchhhhccC-CCCcEEEEEEccCCC-CeEEEEEEeCCCcE-EEEe
Q 023716 202 --TVFQRF-PPKLIKKLSTDCLVM--QNHHYGISPETLRKNLDL-SRFFKMLTTSADEDN-KVYVSTVQAYDYPV-TAFQ 273 (278)
Q Consensus 202 --~lf~~~-p~~l~~~l~~~~~~~--~~H~~~i~~~~~~~~~~L-~~~~~vlA~s~D~~g-~~~ieaie~~~~pi-~GvQ 273 (278)
.+.-.- .+.+.+.+++...++ ++|+|.+.++. +..+ +++++++|++.|.+| ..++++||++++|+ +|||
T Consensus 155 ~~~v~~~~~~s~l~~~~~~~~~v~~~H~Hsy~v~~~~---v~~l~~~g~~v~A~s~d~~~~g~~ieaie~~~~p~~~GvQ 231 (273)
T 2w7t_A 155 ACDVYIVEKSSIMAKIYSKSNIVVERHRHRYEVNTAY---FEDLRKAGLCISAVTDPTFSSRCRVEAVENPSLRFFLAVQ 231 (273)
T ss_dssp EEEEEECCTTSHHHHHTTTCSEEEEEEEECCEECGGG---HHHHHHTTCEEEEESCTTCCTTCCEEEEECTTSSSEEEES
T ss_pred ceEEEEecCCcHHHHHhCCCceEEeecccccccCHHH---HHhhccCCcEEEEEcCCcCCCCCeEEEEEcCCCCeEEEEe
Confidence 010000 123555555444443 46778887743 4567 789999999976221 13899999998985 6999
Q ss_pred ecCCC
Q 023716 274 WHPEV 278 (278)
Q Consensus 274 fHPEk 278 (278)
||||+
T Consensus 232 fHPE~ 236 (273)
T 2w7t_A 232 FHPEF 236 (273)
T ss_dssp SCGGG
T ss_pred CCCCc
Confidence 99996
No 13
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=99.91 E-value=1.1e-24 Score=212.83 Aligned_cols=179 Identities=15% Similarity=0.193 Sum_probs=116.4
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHH
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAI 138 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~ 138 (278)
.+..|+|+... .+|. .++.++|+++|+.+.++|++.+.+++.+. ++||||||||+.. .+...
T Consensus 9 ~~~~I~IlD~g-------------~~~~-~~i~r~lr~~Gv~~~i~p~~~~~~~i~~~--~~dgIILsGGp~s--v~~~~ 70 (527)
T 3tqi_A 9 HQHRILILDFG-------------SQYA-QLIARRVREIGVYCELMPCDIDEETIRDF--NPHGIILSGGPET--VTLSH 70 (527)
T ss_dssp CCSEEEEEECS-------------CTTH-HHHHHHHHHHTCEEEEEETTCCSSSSTTT--CCSEEEECCCCC--------
T ss_pred cCCeEEEEECC-------------CccH-HHHHHHHHHCCCeEEEEECCCCHHHHHhc--CCCEEEECCcCcc--cccCC
Confidence 34679998652 2333 57889999999999999998776654322 5699999999872 11111
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCc
Q 023716 139 VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTD 218 (278)
Q Consensus 139 ~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~ 218 (278)
...+.+.+++.+ +||||||+|||+|+.++||++.- ....+.+...+.+. . .+.+|++++..........
T Consensus 71 ~~~~~~~~~~~~-----~PvLGIC~G~Qlla~~lGG~V~~--~~~~e~G~~~v~~~---~-~~~l~~~l~~~~~~~~~~~ 139 (527)
T 3tqi_A 71 TLRAPAFIFEIG-----CPVLGICYGMQTMAYQLGGKVNR--TAKAEFGHAQLRVL---N-PAFLFDGIEDQVSPQGEPL 139 (527)
T ss_dssp ---CCCSTTTSS-----SCEEEETHHHHHHHHHSSSCBC-------CEEEEEEEES---S-CTTTTSSCCSBCCTTSCCE
T ss_pred ChhhHHHHHhcC-----CCEEEEChHHHHHHHHcCCeEEe--CCCccccceEEEEc---C-CChhhcCCccccccccccc
Confidence 112333344455 99999999999999999998421 11112122222221 1 3557766654210000012
Q ss_pred cEEEEEEeeecCccchhhhccCCCCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 219 CLVMQNHHYGISPETLRKNLDLSRFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 219 ~~~~~~H~~~i~~~~~~~~~~L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
..++++|++ .+..+|++|+++|++.| + .+++++++++++||+|||||+
T Consensus 140 ~~v~~~H~d--------~v~~lp~g~~v~A~s~~--~--~i~ai~~~~~~~~GvQFHPE~ 187 (527)
T 3tqi_A 140 LDVWMSHGD--------IVSELPPGFEATACTDN--S--PLAAMADFKRRFFGLQFHPEV 187 (527)
T ss_dssp EEEEEESSS--------CBCSCCTTCEEEEEETT--E--EEEEEECSSSCEEEESBCSSS
T ss_pred eEEEEEccc--------chhccCCCCEEEEEeCC--C--cEEEEEcCCCCEEEEEecccc
Confidence 356778885 45679999999999965 5 799999988999999999996
No 14
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=99.90 E-value=5.6e-25 Score=213.74 Aligned_cols=159 Identities=17% Similarity=0.249 Sum_probs=109.1
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEe
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIC 162 (278)
.+|. .++.++|+++|+.+.++|++.+.+++.+. .+||||||||++.. |......+.+.+++.+ +||||||
T Consensus 9 ~~~~-~~i~r~l~~~G~~~~i~p~~~~~~~i~~~--~~dgiIlsGGp~s~--~~~~~~~~~~~~~~~~-----~PvLGIC 78 (503)
T 2ywb_A 9 SQYT-RLIARRLRELRAFSLILPGDAPLEEVLKH--RPQALILSGGPRSV--FDPDAPRPDPRLFSSG-----LPLLGIC 78 (503)
T ss_dssp CTTH-HHHHHHHHTTTCCEEEEETTCCHHHHHTT--CCSEEEECCCSSCS--SCTTCCCCCGGGGCSS-----CCEEEET
T ss_pred CcHH-HHHHHHHHHCCCEEEEEECCCCHHHHHhc--CCCEEEECCCCchh--ccCCCcchHHHHHhCC-----CCEEEEC
Confidence 4454 67899999999999999998777666543 57999999998621 1000001112233445 9999999
Q ss_pred chHHHHHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCCC
Q 023716 163 LGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSR 242 (278)
Q Consensus 163 lG~QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~ 242 (278)
+|||+|+.++||++.- ....+.+...+.+. .+.+|++++ +...++++|++. +..+|+
T Consensus 79 ~G~Qlla~~~GG~v~~--~~~~e~G~~~v~~~-----~~~l~~~~~--------~~~~v~~~H~~~--------v~~lp~ 135 (503)
T 2ywb_A 79 YGMQLLAQELGGRVER--AGRAEYGKALLTRH-----EGPLFRGLE--------GEVQVWMSHQDA--------VTAPPP 135 (503)
T ss_dssp HHHHHHHHTTTCEEEC--C---CEEEEECSEE-----CSGGGTTCC--------SCCEEEEECSCE--------EEECCT
T ss_pred HHHHHHHHHhCCeEee--CCCCccceEEEEec-----CcHHhhcCC--------CccEEEEECCCc--------cccCCC
Confidence 9999999999998421 11111111122211 244555443 334677889864 456899
Q ss_pred CcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 243 FFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 243 ~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
+|+++|++.| + .++++++++.++||+|||||+
T Consensus 136 g~~v~A~s~~--~--~i~ai~~~~~~~~gvQFHPE~ 167 (503)
T 2ywb_A 136 GWRVVAETEE--N--PVAAIASPDGRAYGVQFHPEV 167 (503)
T ss_dssp TCEEEEECSS--C--SCSEEECTTSSEEEESBCTTS
T ss_pred CCEEEEEECC--C--CEEEEEeCCCCEEEEecCCCc
Confidence 9999999976 6 689999988899999999996
No 15
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=99.90 E-value=5.1e-24 Score=209.09 Aligned_cols=170 Identities=18% Similarity=0.273 Sum_probs=111.8
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCC--CccchHHHHHHHHHHHHhcCCCCCCcEEEEechH
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK--DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~--~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~ 165 (278)
.+..++|+++|+.+.++|++.+.+++.. .++||||||||+.. +.........+++.+.+++ +||||||+||
T Consensus 21 ~~I~r~lre~Gv~~eiv~~~~~~~~i~~--~~~dgIIlsGGp~s~~~~~~~~~~~~l~~~a~~~g-----~PvLGIC~G~ 93 (556)
T 3uow_A 21 HLIVKRLNNIKIFSETKDYGVELKDIKD--MNIKGVILSGGPYSVTEAGSPHLKKEVFEYFLEKK-----IPIFGICYGM 93 (556)
T ss_dssp HHHHHHHHHTTCCEEEEETTCCGGGTTT--SCEEEEEECCCSCCTTSTTCCCCCHHHHHHHHHTT-----CCEEEETHHH
T ss_pred HHHHHHHHHCCCeEEEEECCCCHHHHhh--cCCCEEEECCCCCcccccCCcchhHHHHHHhhhcC-----CCEEEECHHH
Confidence 5788999999999999999876655432 37899999999862 1111111246778888778 9999999999
Q ss_pred HHHHHHHhCcccccccccccccccccceeccc------------------cc-CCcccccCchhHHHhh-CCccEEEEEE
Q 023716 166 ELLTMIISKDKNILESFNAADQASTLQFMENT------------------SI-EGTVFQRFPPKLIKKL-STDCLVMQNH 225 (278)
Q Consensus 166 QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~------------------~~-~~~lf~~~p~~l~~~l-~~~~~~~~~H 225 (278)
|+|+.++||++.- ....+.....+.+.... .. ...+...-.+.+++.+ .+...++++|
T Consensus 94 QlLa~~lGG~V~~--~~~~E~G~~~l~~~~~~~~~~~p~v~~~~~~~~~mg~~~n~~~~~~~~~Lf~gl~~~~~~v~~~H 171 (556)
T 3uow_A 94 QEIAVQMNGEVKK--SKTSEYGCTDVNILRNDNINNITYCRNFGDSSSAMDLYSNYKLMNETCCLFENIKSDITTVWMNH 171 (556)
T ss_dssp HHHHHHTTCEEEE--EEEEEEEEEEEEECCTTGGGGCSGGGGC---CCHHHHHTTSCCCC--CGGGTTCCSSEEEEEEEE
T ss_pred HHHHHHhCCcEec--CCCcccCCcceeeccCcccccccceecccccccccccccccccccccchhhcccccCceEEEEEc
Confidence 9999999998421 11111111111111110 00 0000000011233344 3444678889
Q ss_pred eeecCccchhhhccCCCCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 226 HYGISPETLRKNLDLSRFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 226 ~~~i~~~~~~~~~~L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
++. +..+|++|+++|++.+ + .++++++++.++||+|||||+
T Consensus 172 ~d~--------V~~lp~g~~vlA~s~~--~--~i~ai~~~~~~i~GvQFHPE~ 212 (556)
T 3uow_A 172 NDE--------VTKIPENFYLVSSSEN--C--LICSIYNKEYNIYGVQYHPEV 212 (556)
T ss_dssp EEE--------EEECCTTCEEEEEETT--E--EEEEEEETTTTEEEESSCTTS
T ss_pred cce--------eeccCCCcEEEEEeCC--C--CEEEEEECCCCEEEEEcCCCC
Confidence 964 4568999999999976 6 799999988999999999996
No 16
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=99.90 E-value=6.7e-24 Score=187.04 Aligned_cols=160 Identities=19% Similarity=0.169 Sum_probs=109.4
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCC------Cccch--HHHHHHHHHHHHhcCCCCCCcEE
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK------DGLYY--AIVEKVFKKILEKNDAGDHFPLY 159 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~------~p~~~--~~~~~li~~al~~~~~g~~~PVL 159 (278)
..+.+|+++.|..+.++.....+ .+++.++.+|||||+||+.. +..|. ....++++.+++.+ +|||
T Consensus 15 g~~~~~l~~~g~~~~~~~~~~~~-~~p~~~~~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~PvL 88 (236)
T 3l7n_A 15 GAYLAWAALRGHDVSMTKVYRYE-KLPKDIDDFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQKAAKSE-----KIIV 88 (236)
T ss_dssp HHHHHHHHHTTCEEEEEEGGGTC-CCCSCGGGCSEEEECCCSSCTTCCTTTCTTCCHHHHHHHHHHHHHTT-----CEEE
T ss_pred hHHHHHHHHCCCeEEEEeeeCCC-CCCCCccccCEEEECCCCCCcccccccCcccchHHHHHHHHHHHHcC-----CCEE
Confidence 46778999999999888764432 12334678999999999863 11222 22568889888888 9999
Q ss_pred EEechHHHHHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhcc
Q 023716 160 AHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLD 239 (278)
Q Consensus 160 GIClG~QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~ 239 (278)
|||+|||+|+.++||+.. .....+.+..++..+.... .+.+|..++. ...++++|++. ..
T Consensus 89 GIClG~QlL~~~~Gg~v~--~~~~~~~G~~~v~~~~~~~-~~~l~~~~~~--------~~~v~~~H~~~---------~~ 148 (236)
T 3l7n_A 89 GVCLGAQLMGVAYGADYL--HSPKKEIGNYLISLTEAGK-MDSYLSDFSD--------DLLVGHWHGDM---------PG 148 (236)
T ss_dssp EETHHHHHHHHHTTCCCE--EEEEEEEEEEEEEECTTGG-GCGGGTTSCS--------EEEEEEEEEEE---------CC
T ss_pred EEchHHHHHHHHhCCEEe--cCCCceeeeEEEEEccCcc-cChHHhcCCC--------CcEEEEecCCc---------cc
Confidence 999999999999999832 1111222223333322111 2455554443 33567778751 46
Q ss_pred CCCCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 240 LSRFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 240 L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
+|++++++|++.+ + .+++++..+ +++|+|||||+
T Consensus 149 lp~~~~vla~s~~--~--~~~a~~~~~-~v~gvQfHPE~ 182 (236)
T 3l7n_A 149 LPDKAQVLAISQG--C--PRQIIKFGP-KQYAFQCHLEF 182 (236)
T ss_dssp CCTTCEEEEECSS--C--SCSEEEEET-TEEEESSBSSC
T ss_pred CCChheEEEECCC--C--CEEEEEECC-CEEEEEeCCCC
Confidence 8999999999966 5 477888654 89999999996
No 17
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=99.89 E-value=9.6e-24 Score=179.03 Aligned_cols=151 Identities=17% Similarity=0.217 Sum_probs=93.7
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHH--HHHHHHHHHHhcCCCCCCcEEEEechH
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAI--VEKVFKKILEKNDAGDHFPLYAHCLGF 165 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~--~~~li~~al~~~~~g~~~PVLGIClG~ 165 (278)
.+|+++++++|+.+++++. ++ .++.+||||||||++ ..+... .+.+++.+.+++ +||||||+||
T Consensus 13 ~~~~~~l~~~G~~~~~~~~---~~----~~~~~dglil~GG~~--~~~~~~~~~~~~~~~i~~~~-----~PilGIC~G~ 78 (186)
T 2ywj_A 13 EEHEEAIKKAGYEAKKVKR---VE----DLEGIDALIIPGGES--TAIGKLMKKYGLLEKIKNSN-----LPILGTCAGM 78 (186)
T ss_dssp HHHHHHHHHTTSEEEEECS---GG----GGTTCSEEEECCSCH--HHHHHHHHHTTHHHHHHTCC-----CCEEEETHHH
T ss_pred HHHHHHHHHCCCEEEEECC---hH----HhccCCEEEECCCCc--hhhhhhhhccCHHHHHHhcC-----CcEEEECHHH
Confidence 4578999999999998874 22 367899999999975 122111 123455443444 9999999999
Q ss_pred HHHHHHHhCcccccccccccccccccceecc-ccc-CCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccC-CC
Q 023716 166 ELLTMIISKDKNILESFNAADQASTLQFMEN-TSI-EGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDL-SR 242 (278)
Q Consensus 166 QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~-~~~-~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L-~~ 242 (278)
|+|+.++||+..-+...+... ....+... ... ...+|.+ + +...++.+|++. +..+ ++
T Consensus 79 Qll~~~~gg~~~~lg~~~~~~--~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~H~~~--------v~~l~~~ 139 (186)
T 2ywj_A 79 VLLSKGTGINQILLELMDITV--KRNAYGRQVDSFEKEIEFKD--------L-GKVYGVFIRAPV--------VDKILSD 139 (186)
T ss_dssp HHHSSCCSSCCCCCCCSSEEE--ETTTTCSSSCCEEEEEEETT--------T-EEEEEEESSCCE--------EEEECCT
T ss_pred HHHHHHhCCCcCccCCCceeE--EeccCCCcccceeccccccc--------C-CcEEEEEEecce--------eeecCCC
Confidence 999999999731111111000 00000000 000 0112221 1 122345567753 4567 89
Q ss_pred CcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 243 FFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 243 ~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
+++++|++ | + +++++++. +++|+|||||+
T Consensus 140 ~~~v~a~s-d--~--~~~a~~~~--~~~gvQfHPE~ 168 (186)
T 2ywj_A 140 DVEVIARD-G--D--KIVGVKQG--KYMALSFHPEL 168 (186)
T ss_dssp TCEEEEEE-T--T--EEEEEEET--TEEEESSCGGG
T ss_pred CeEEEEEE-C--C--EEEEEeeC--CEEEEECCCCc
Confidence 99999999 6 6 89999963 79999999995
No 18
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=99.89 E-value=2.1e-23 Score=189.40 Aligned_cols=194 Identities=18% Similarity=0.213 Sum_probs=116.7
Q ss_pred CCcEEEEeCCC-CCCCCCCCCCCCchhhhHHHHHHHHHHcCC----eEEEEeCCCC----------hhhHHH---hcccC
Q 023716 59 YRPVIGIVTHP-GDGASGRLNNATNASYIAASYVKFVESAGA----RVIPLIYNEP----------EDVLFE---KLELV 120 (278)
Q Consensus 59 ~rPvIGIl~~~-~~~~~~~~~~~~~~~yi~~syv~~le~~Ga----~~v~i~~~~~----------~~~l~~---~l~~i 120 (278)
.++.|+|++.. +. ..+| .+++++|+++|+ +++++..+.. .+++.+ .++.+
T Consensus 24 ~~~~Iavv~d~~~~----------~~s~--~si~~~L~~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 91 (289)
T 2v4u_A 24 KICSIALVGKYTKL----------RDCY--ASVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQKLCKA 91 (289)
T ss_dssp EEEEEEEEESCSSC----------CGGG--HHHHHHHHHHHHHTTEEEEEEEEEGGGGSHHHHHHCHHHHHHHHHHHHHC
T ss_pred CceEEEEEecCcCC----------CccH--HHHHHHHHHhhhhhCCceEEEEechhhcccccccCChhhhhhHHHHHhhC
Confidence 34679998432 21 1223 378889988765 4455544321 111111 36789
Q ss_pred CEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCccc----cc-ccccccccccc-ccee
Q 023716 121 NGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKN----IL-ESFNAADQAST-LQFM 194 (278)
Q Consensus 121 DGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~~~----il-~~~~~~~~~~~-l~~~ 194 (278)
||||||||++. + ......++++.+++.+ +||||||+|||+|+.++||+.. .. ..+.. +...+ +.+.
T Consensus 92 dgiil~GG~~~-~-~~~~~~~~i~~~~~~~-----~PilGIC~G~Q~l~~a~Gg~v~~~~~~~~~e~~~-~~~~~~i~~~ 163 (289)
T 2v4u_A 92 DGILVPGGFGI-R-GTLGKLQAISWARTKK-----IPFLGVXLGMQLAVIEFARNCLNLKDADSTEFRP-NAPVPLVIDM 163 (289)
T ss_dssp SEEEECSCCSS-T-THHHHHHHHHHHHHTT-----CCEEEETHHHHHHHHHHHHHHSCCTTEEESTTCT-TCSEEEEEEC
T ss_pred CEEEecCCCCc-h-hHHHHHHHHHHHHHcC-----CcEEEECccHHHHHHHHhccccccccCcccccCc-cccccceecc
Confidence 99999999764 2 2233457788888888 9999999999999999999841 11 01110 00000 0000
Q ss_pred -cccc--cCCc-------cccc-CchhHHHhhCCccE--EEEEEeeecCccchhhhccCC-CCcEEEEEEccCCCCeEEE
Q 023716 195 -ENTS--IEGT-------VFQR-FPPKLIKKLSTDCL--VMQNHHYGISPETLRKNLDLS-RFFKMLTTSADEDNKVYVS 260 (278)
Q Consensus 195 -~~~~--~~~~-------lf~~-~p~~l~~~l~~~~~--~~~~H~~~i~~~~~~~~~~L~-~~~~vlA~s~D~~g~~~ie 260 (278)
.|.. .+++ +.-. -.+.+.+.++.... ..++|+|.++++ .+.+|+ ++++++|++.| |. +|+
T Consensus 164 ~~h~~~~~~~~~~~g~~~v~~~~~~s~l~~~~~~~~~v~~~H~H~y~vn~~---~v~~l~~~g~~v~A~s~d--g~-~ie 237 (289)
T 2v4u_A 164 PEHNPGNLGGTMRLGIRRTVFKTENSILRKLYGDVPFIEERHRHRFEVNPN---LIKQFEQNDLSFVGQDVD--GD-RME 237 (289)
T ss_dssp CBCCTTCSSCBCEEEEEEEEESCSCCHHHHHTTSCSEEEEEEEECEEECGG---GSGGGTTSSEEEEEEETT--SC-SEE
T ss_pred hhhcccccCCccccceEEEEEecCCCHHHHhcCCCceEEEecccccccCHH---HHHhcccCCeEEEEEcCC--CC-eEE
Confidence 0000 0000 0000 01234455554322 245577888874 456788 99999999976 62 499
Q ss_pred EEEeCCCcE-EEEeecCCC
Q 023716 261 TVQAYDYPV-TAFQWHPEV 278 (278)
Q Consensus 261 aie~~~~pi-~GvQfHPEk 278 (278)
+||++++|+ +|||||||+
T Consensus 238 aie~~~~p~~lGvQfHPE~ 256 (289)
T 2v4u_A 238 IIELANHPYFVGVQFHPEF 256 (289)
T ss_dssp EEEESSSSCEEEESSBGGG
T ss_pred EEEcCCCCeEEEEECCCCC
Confidence 999998886 599999995
No 19
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=99.89 E-value=2.5e-23 Score=179.70 Aligned_cols=162 Identities=15% Similarity=0.160 Sum_probs=97.1
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchH-HHHHHHHHHHHhcCCCCCCcEEEEechHH
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYA-IVEKVFKKILEKNDAGDHFPLYAHCLGFE 166 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~-~~~~li~~al~~~~~g~~~PVLGIClG~Q 166 (278)
.|+.++|+++|+.++++. ++++ ++.+||||||||+........ ....+++.+.+.+ +||||||+|||
T Consensus 16 ~si~~al~~~G~~~~v~~---~~~~----l~~~D~lilPG~g~~~~~~~~~~~~~~i~~~~~~~-----~PvlGIClG~Q 83 (211)
T 4gud_A 16 SSVKFAIERLGYAVTISR---DPQV----VLAADKLFLPGVGTASEAMKNLTERDLIELVKRVE-----KPLLGICLGMQ 83 (211)
T ss_dssp HHHHHHHHHTTCCEEEEC---CHHH----HHHCSEEEECCCSCHHHHHHHHHHTTCHHHHHHCC-----SCEEEETHHHH
T ss_pred HHHHHHHHHCCCEEEEEC---CHHH----HhCCCEEEECCCCCHHHHHHHHHhcChHHHHHHcC-----CCEEEEchhHh
Confidence 578899999999999864 3443 456899999997652111111 1124567777777 99999999999
Q ss_pred HHHHHHhCcccccc-------ccccc---ccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhh
Q 023716 167 LLTMIISKDKNILE-------SFNAA---DQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRK 236 (278)
Q Consensus 167 lL~~~~Gg~~~il~-------~~~~~---~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~ 236 (278)
+|+.++|++..... ..+.. ....... ..+.. ...+.......+.+.+.....+++.|++.+
T Consensus 84 lL~~~~g~~~~~~~~~~~gl~~~~~~v~~~~~~~~~-~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v------- 154 (211)
T 4gud_A 84 LLGKLSEEKGQKADEIVQCLGLVDGEVRLLQTGDLP-LPHMG-WNTVQVKEGHPLFNGIEPDAYFYFVHSFAM------- 154 (211)
T ss_dssp TTSSEECCC----CCCEECCCSSSCEEEECCCTTSC-SSEEE-EECCEECTTCGGGTTCCTTCCEEEEESEEC-------
T ss_pred HHHHHhCCcccccCCccccceeccceEEEcccCCcc-eeecc-ceeeeeeccChhhcCCCCCcEEEEEeeEEe-------
Confidence 99999888631110 00000 0000000 00000 000100111223344444556788898743
Q ss_pred hccCCCCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 237 NLDLSRFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 237 ~~~L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
+.+..++|++.+ |..++.+++ ++|+||+||||||
T Consensus 155 ----~~~~~~~a~~~~--g~~~~~~v~--~~~v~GvQFHPE~ 188 (211)
T 4gud_A 155 ----PVGDYTIAQCEY--GQPFSAAIQ--AGNYYGVQFHPER 188 (211)
T ss_dssp ----CCCTTEEEEEES--SSEEEEEEE--ETTEEEESSCGGG
T ss_pred ----CCCCeEEEEecC--CCeEEEEEe--CCCEEEEEccCEe
Confidence 445678898876 766777777 5689999999996
No 20
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=99.88 E-value=2.1e-23 Score=209.02 Aligned_cols=153 Identities=16% Similarity=0.194 Sum_probs=103.6
Q ss_pred HHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHHHH-HHHHHHHHhcCCCCCCcEEEEechHHH
Q 023716 89 SYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVE-KVFKKILEKNDAGDHFPLYAHCLGFEL 167 (278)
Q Consensus 89 syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~-~li~~al~~~~~g~~~PVLGIClG~Ql 167 (278)
...+.|+++|+.+.++|++.+.+++.. ..+||||||||++. .++... .+.+.+++.+ +||||||+|||+
T Consensus 44 liar~lre~Gv~~~ivp~~~~~e~i~~--~~~dGIILsGGp~s---~~~~~~~~~~~~i~~~g-----~PvLGIC~G~Ql 113 (697)
T 2vxo_A 44 VIDRRVRELFVQSEIFPLETPAFAIKE--QGFRAIIISGGPNS---VYAEDAPWFDPAIFTIG-----KPVLGICYGMQM 113 (697)
T ss_dssp HHHHHHHHTTCCEEEEETTCCHHHHHH--HTCSEEEEEECC----------CCCCCGGGTTSS-----CCEEEEEHHHHH
T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHhh--cCCCEEEECCCCCc---ccCccchhHHHHHHhCC-----CCEEEECHHHHH
Confidence 355899999999999999887766653 57999999999872 111110 1112223444 999999999999
Q ss_pred HHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCCCCcEEE
Q 023716 168 LTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKML 247 (278)
Q Consensus 168 L~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~~~~vl 247 (278)
|+.++||+..-. ...+.+..++.+. . ++.+|++++. ...++.+|++. +..+|++|+++
T Consensus 114 La~~lGG~v~~~--~~~e~G~~~v~~~---~-~~~Lf~~l~~--------~~~v~~~H~~~--------V~~lp~g~~vl 171 (697)
T 2vxo_A 114 MNKVFGGTVHKK--SVREDGVFNISVD---N-TCSLFRGLQK--------EEVVLLTHGDS--------VDKVADGFKVV 171 (697)
T ss_dssp HHHHTTCCBCC---------CEEEEEC---T-TSGGGTTCCS--------EEEECCCSSCC--------BSSCCTTCEEE
T ss_pred HHHHhCCeEeec--CCCccceEEEEec---C-CChhhhcCCc--------cCcceeecccc--------eecCCCCeEEE
Confidence 999999984211 1122222233221 1 3556655543 23556678854 45789999999
Q ss_pred EEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 248 TTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 248 A~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
|++ | + .+++|++++.++||+|||||+
T Consensus 172 A~s-~--~--~i~ai~~~~~~i~GvQFHPE~ 197 (697)
T 2vxo_A 172 ARS-G--N--IVAGIANESKKLYGAQFHPEV 197 (697)
T ss_dssp EEE-T--T--EEEEEEETTTTEEEESSCTTS
T ss_pred EEe-C--C--ceEEEEeCCCCEEEEEecccC
Confidence 999 4 5 899999999999999999995
No 21
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=99.88 E-value=2.2e-23 Score=177.11 Aligned_cols=168 Identities=18% Similarity=0.189 Sum_probs=99.9
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchH--
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYA-- 137 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~-- 137 (278)
||+|||++.+++ ..+|+++|+++|+.+++++.. + .++.+||||||||....+....
T Consensus 2 ~p~Igi~~~~~~---------------~~~~~~~l~~~G~~~~~~~~~---~----~l~~~dglil~GG~~~~~~~~~~~ 59 (191)
T 2ywd_A 2 RGVVGVLALQGD---------------FREHKEALKRLGIEAKEVRKK---E----HLEGLKALIVPGGESTTIGKLARE 59 (191)
T ss_dssp -CCEEEECSSSC---------------HHHHHHHHHTTTCCCEEECSG---G----GGTTCSEEEECSSCHHHHHHHHHH
T ss_pred CcEEEEEecCCc---------------hHHHHHHHHHCCCEEEEeCCh---h----hhccCCEEEECCCChhhhHHhhhh
Confidence 799999987521 247899999999999998742 2 3567999999999521111111
Q ss_pred -HHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhC-cccccccccccccccccceecccccCCc--ccccCchhHHH
Q 023716 138 -IVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISK-DKNILESFNAADQASTLQFMENTSIEGT--VFQRFPPKLIK 213 (278)
Q Consensus 138 -~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg-~~~il~~~~~~~~~~~l~~~~~~~~~~~--lf~~~p~~l~~ 213 (278)
...++++.+++++ + +||||||+|||+|+.++|| +. .+... ..+...... ..+.. .+.. .....
T Consensus 60 ~~~~~~i~~~~~~~---~-~PilGiC~G~Q~l~~~~gg~~~--~~~lg----~~~~~~~~~-~~g~~~~~~~~--~~~~~ 126 (191)
T 2ywd_A 60 YGIEDEVRKRVEEG---S-LALFGTCAGAIWLAKEIVGYPE--QPRLG----VLEAWVERN-AFGRQVESFEE--DLEVE 126 (191)
T ss_dssp TTHHHHHHHHHHTT---C-CEEEEETHHHHHHEEEETTCTT--CCCCC----CEEEEEETT-CSCCSSSEEEE--EEEET
T ss_pred hhHHHHHHHHHHCC---C-CeEEEECHHHHHHHHHhCCCCC--Ccccc----ccceEEEcC-CcCCccccccc--ccccc
Confidence 1124444444322 2 8999999999999999998 41 11110 000000000 00000 0000 00001
Q ss_pred hhCCccEEEEEEeeecCccchhhhccCCCCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 214 KLSTDCLVMQNHHYGISPETLRKNLDLSRFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 214 ~l~~~~~~~~~H~~~i~~~~~~~~~~L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
.+ +....+++|++.+ ..++++++++|++ | + +++++++. +++|+|||||+
T Consensus 127 ~~-~~~~~~~~Hs~~v--------~~l~~~~~~~a~~-~--~--~~~a~~~~--~~~gvQfHPE~ 175 (191)
T 2ywd_A 127 GL-GSFHGVFIRAPVF--------RRLGEGVEVLARL-G--D--LPVLVRQG--KVLASSFHPEL 175 (191)
T ss_dssp TT-EEEEEEEESCCEE--------EEECTTCEEEEEE-T--T--EEEEEEET--TEEEESSCGGG
T ss_pred CC-CceeEEEEcccce--------eccCCCcEEEEEE-C--C--EEEEEEEC--CEEEEEeCCCC
Confidence 12 2223456677533 3578899999998 5 6 89999975 49999999995
No 22
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=99.87 E-value=3.5e-22 Score=194.66 Aligned_cols=205 Identities=18% Similarity=0.201 Sum_probs=122.5
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCCh---hhHHHhcccCCEEEEcCCCCCCcc
Q 023716 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE---DVLFEKLELVNGVLYTGGWAKDGL 134 (278)
Q Consensus 58 ~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~---~~l~~~l~~iDGlIl~GG~~~~p~ 134 (278)
..++.||+++..-.- .+.+.|+. .++..+....|+++.+++++... +.+.+.++.+||||||||+.. +.
T Consensus 298 ~~~v~I~ivgkyv~l------~D~y~Sv~-~aL~~~g~~~g~~v~I~~~d~~~~~~~~~~~~L~~~DGIILpGGfGd-~~ 369 (550)
T 1vco_A 298 ERTVKIAIAGKYVKM------PDAYLSLL-EALRHAGIKNRARVEVKWVDAESLEAADLEEAFRDVSGILVPGGFGV-RG 369 (550)
T ss_dssp SEEEEEEEEESCC---------CTTHHHH-HHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHTTTCSCEEECCCCSS-TT
T ss_pred CCceEEcccCCeEEE------EecHHHHH-HHHHHHHHHcCCeEEEEEeCccccccchHHHHHhcCCEEEECCCCCC-cc
Confidence 356889987654211 12233332 23444445567788888765431 235566889999999999863 33
Q ss_pred chHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCcccccccccc-c---cccccc-ceecc-c---ccCCcccc
Q 023716 135 YYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNA-A---DQASTL-QFMEN-T---SIEGTVFQ 205 (278)
Q Consensus 135 ~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~~~il~~~~~-~---~~~~~l-~~~~~-~---~~~~~lf~ 205 (278)
.. ....+++++++++ +|+||||+|||+|++++||+..-+..... + +...+. .+..+ . ..+++++-
T Consensus 370 ~~-g~i~~ir~a~e~~-----iPiLGICLGmQlL~~a~Gg~v~~l~~~~s~E~~~~~~hpvi~~~~~q~~i~~~ggtmrl 443 (550)
T 1vco_A 370 IE-GKVRAAQYARERK-----IPYLGICLGLQIAVIEFARNVAGLKGANSTEFDPHTPHPVIDLMPEQLEVEGLGGTMRL 443 (550)
T ss_dssp HH-HHHHHHHHHHHTT-----CCEEEETHHHHHHHHHHHHHTSCCTTCEETTTCTTCSCEEEEESCGGGCC---CCCCEE
T ss_pred hh-hhHHHHHHHHHCC-----CcEEEECcCHHHHHHHhCcccccCCccccccccCCCCCCeEEeccccccccccCCcccc
Confidence 22 2237788888888 99999999999999999997321111100 0 000111 11000 0 01233321
Q ss_pred -----cC-chh-HHHhhCCccE-EEEEEeeecCccchhhhccCCCCcEEEEEEccCCC--CeEEEEEEeCCCcEE-EEee
Q 023716 206 -----RF-PPK-LIKKLSTDCL-VMQNHHYGISPETLRKNLDLSRFFKMLTTSADEDN--KVYVSTVQAYDYPVT-AFQW 274 (278)
Q Consensus 206 -----~~-p~~-l~~~l~~~~~-~~~~H~~~i~~~~~~~~~~L~~~~~vlA~s~D~~g--~~~ieaie~~~~pi~-GvQf 274 (278)
.+ +.. +.+.++...+ ..++|.|.+++...+.++ +++++++|++.|.+| ..++|+||++++|+| ||||
T Consensus 444 G~~~v~i~~~s~l~~iy~~~~v~e~h~H~Y~Vns~~~~~l~--~~gl~v~a~s~dG~g~~~~~VeaIe~~~~p~fvGVQF 521 (550)
T 1vco_A 444 GDWPMRIKPGTLLHRLYGKEEVLERHRHRYEVNPLYVDGLE--RAGLVVSATTPGMRGRGAGLVEAIELKDHPFFLGLQS 521 (550)
T ss_dssp EEEEEEECTTSHHHHHHCCSEEEEEEEESEEECHHHHHHHH--HHTEEEEEECCCBTTBSTTCEEEEEETTSSSEEEESS
T ss_pred cceEEEEccCchhhHhcCCceeeeeccceEEEchHHhhccc--cCCeEEEEEeCCCCccCCCcEEEEEeCCCCEEEEEEe
Confidence 11 223 3334444433 467888888776554432 378999999977311 228999999999987 9999
Q ss_pred cCCC
Q 023716 275 HPEV 278 (278)
Q Consensus 275 HPEk 278 (278)
|||+
T Consensus 522 HPE~ 525 (550)
T 1vco_A 522 HPEF 525 (550)
T ss_dssp CGGG
T ss_pred CCcc
Confidence 9995
No 23
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=99.87 E-value=6.4e-22 Score=170.67 Aligned_cols=173 Identities=16% Similarity=0.145 Sum_probs=108.8
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCcc-----
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGL----- 134 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~----- 134 (278)
.+.|+|+..++. ....+++++++++|+++++++.++ .++.+||||||||.+....
T Consensus 2 ~~~i~il~~~~~-------------~~~~~~~~~l~~~g~~~~~~~~~~-------~~~~~d~lil~Gg~~~~~~~~~~~ 61 (213)
T 3d54_D 2 KPRACVVVYPGS-------------NCDRDAYHALEINGFEPSYVGLDD-------KLDDYELIILPGGFSYGDYLRPGA 61 (213)
T ss_dssp CCEEEEECCTTE-------------EEHHHHHHHHHTTTCEEEEECTTC-------CCSSCSEEEECEECGGGGCSSTTH
T ss_pred CcEEEEEEcCCC-------------CccHHHHHHHHHCCCEEEEEecCC-------CcccCCEEEECCCCchhhhhcccc
Confidence 367999976531 111357899999999999987642 3678999999999763211
Q ss_pred ch--HHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH--HhCcccccccccccccccccceecccccCCcccccCchh
Q 023716 135 YY--AIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI--ISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPK 210 (278)
Q Consensus 135 ~~--~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~--~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~ 210 (278)
+. ....++++.+.+++ +||||||+|+|+|+.+ ++|+..-......|.....+.+.. . ++.+|+.++
T Consensus 62 ~~~~~~~~~~l~~~~~~~-----~pilgIC~G~qlLa~aGll~g~v~~~~~~~~~~g~~~v~~~~--~-~~~l~~~~~-- 131 (213)
T 3d54_D 62 VAAREKIAFEIAKAAERG-----KLIMGICNGFQILIEMGLLKGALLQNSSGKFICKWVDLIVEN--N-DTPFTNAFE-- 131 (213)
T ss_dssp HHHTSTTHHHHHHHHHHT-----CEEEECHHHHHHHHHHTSSCSEEECCSSSSCBCCEEEEEECC--C-SSTTSTTSC--
T ss_pred ccccHHHHHHHHHHHHCC-----CEEEEECHHHHHHHHcCCCCCCeecCCCCceEeeeEEEEeCC--C-CCceeeccC--
Confidence 11 12347778888888 9999999999999999 777631111000122222222210 1 344544433
Q ss_pred HHHhhCCccEEEE--EE---eeecCccchhhhccCCCCcEEEEEEccCCCC-eEEEEEEeCCCcEEEEeecCCC
Q 023716 211 LIKKLSTDCLVMQ--NH---HYGISPETLRKNLDLSRFFKMLTTSADEDNK-VYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 211 l~~~l~~~~~~~~--~H---~~~i~~~~~~~~~~L~~~~~vlA~s~D~~g~-~~ieaie~~~~pi~GvQfHPEk 278 (278)
+....+. +| ++.+ .+++++++|++.|.+|. ..++++++++.+++|+|||||+
T Consensus 132 ------~~~~~~~~~~H~~~s~~~----------~~~~~~~~a~~~~~ng~~~~i~a~~~~~~~~~gvQfHPE~ 189 (213)
T 3d54_D 132 ------KGEKIRIPIAHGFGRYVK----------IDDVNVVLRYVKDVNGSDERIAGVLNESGNVFGLMPHPER 189 (213)
T ss_dssp ------TTCEEEEECCBSSCEEEC----------SSCCEEEEEESSCSSCCGGGEEEEECSSSCEEEECSCSTT
T ss_pred ------CCCEEEEEeecCceEEEe----------cCCCcEEEEEcCCCCCCccceeEEEcCCCCEEEEeCCHHH
Confidence 2112232 56 3422 13678999998654441 2689999878899999999996
No 24
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=99.86 E-value=6.1e-22 Score=196.98 Aligned_cols=153 Identities=15% Similarity=0.139 Sum_probs=103.7
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCC--Cc--cchHHHHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK--DG--LYYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~--~p--~~~~~~~~li~~al~~~~~g~~~PVLGICl 163 (278)
.++++++++.|+.+.+++++.+.+ +..+|||||+||+.. +. .+......+++++++.+ +||||||+
T Consensus 460 ~~l~~~l~~~G~~v~Vv~~d~~~~-----~~~~DgIIlsGGPg~p~d~~~p~i~~~~~lI~~a~~~~-----iPiLGICl 529 (645)
T 3r75_A 460 AMIAQQLSSLGLATEVCGVHDAVD-----LARYDVVVMGPGPGDPSDAGDPRIARLYAWLRHLIDEG-----KPFMAVCL 529 (645)
T ss_dssp HHHHHHHHHTTCEEEEEETTCCCC-----GGGCSEEEECCCSSCTTCTTSHHHHHHHHHHHHHHHHT-----CCEEEETH
T ss_pred HHHHHHHHHCCCEEEEEECCCccc-----ccCCCEEEECCCCCChhhhhhhhHHHHHHHHHHHHHCC-----CCEEEECH
Confidence 578999999999999999886532 467999999999863 11 22233457889999988 99999999
Q ss_pred hHHHHHHHHhCcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCCCC
Q 023716 164 GFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRF 243 (278)
Q Consensus 164 G~QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~~ 243 (278)
|||+|+.++||++.-. ....+.....+.+. +..+|..++. ...++.||. +....+|++
T Consensus 530 G~QlLa~alGG~V~~~-~~~~~G~~~~i~~~-----~~~l~~~~~~---------~~~v~~~h~-------~~~~~lp~g 587 (645)
T 3r75_A 530 SHQILNAILGIPLVRR-EVPNQGIQVEIDLF-----GQRERVGFYN---------TYVAQTVRD-------EMDVDGVGT 587 (645)
T ss_dssp HHHHHHHHTTCCEEEE-EEEEEEEEEEEEET-----TEEEEEEEEE---------EEEEBCSCS-------EEEETTTEE
T ss_pred HHHHHHHHhCCEEEcC-CCcccccceEEeee-----cCcceecCCC---------cEEEEEehh-------hccccCCCC
Confidence 9999999999984211 11111111111110 2223222211 122333332 333468999
Q ss_pred cEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 244 FKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 244 ~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
++++|++.| | .|++|++++ ++|||||||+
T Consensus 588 ~~v~A~s~d--g--~i~Ai~~~~--~~GVQFHPE~ 616 (645)
T 3r75_A 588 VAISRDPRT--G--EVHALRGPT--FSSMQFHAES 616 (645)
T ss_dssp EEEEECTTT--C--BEEEEEETT--EEEESSBTTS
T ss_pred eEEEEEcCC--C--cEEEEEcCC--EEEEEeCCee
Confidence 999999876 7 899999765 7999999996
No 25
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=99.86 E-value=3.3e-21 Score=185.45 Aligned_cols=196 Identities=20% Similarity=0.225 Sum_probs=124.8
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcC----CeEEEEeCCCCh---hhH--HHhcccCCEEEEcCC
Q 023716 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAG----ARVIPLIYNEPE---DVL--FEKLELVNGVLYTGG 128 (278)
Q Consensus 58 ~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~G----a~~v~i~~~~~~---~~l--~~~l~~iDGlIl~GG 128 (278)
...-.||+++-... ..++| .|..++|+.+| .++.+...+... +.. .+.++.+||||+|||
T Consensus 291 ~~~v~IalVGKY~~---------l~DaY--~Sv~eAL~hag~~~~~~V~I~wIds~~l~~~~~~~~~~L~~~DgIIlpGG 359 (535)
T 3nva_A 291 KKTINIALVGKYTK---------LKDSY--ISIKEAIYHASAYIGVRPKLIWIESTDLESDTKNLNEILGNVNGIIVLPG 359 (535)
T ss_dssp CCEEEEEEEESCTT---------SGGGG--HHHHHHHHHHHHHTTCEEEEEEEEGGGGCCSSSCCTTTTTSCSEEEECCC
T ss_pred CCeeEEEEEecCcC---------CchhH--HHHHHHHHHHHHHcCCCeEEEEecchhccccccchhhhccCCCEEEECCC
Confidence 34467999876532 24566 46777777655 566655544321 101 246789999999999
Q ss_pred CCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCccccccc-----ccccccccc-cceec---c-cc
Q 023716 129 WAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILES-----FNAADQAST-LQFME---N-TS 198 (278)
Q Consensus 129 ~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~~~il~~-----~~~~~~~~~-l~~~~---~-~~ 198 (278)
... +.. .....+++++++++ +|+||||+|||+|++++||+.--+++ ++.+. ..+ +.+.+ . ..
T Consensus 360 ~G~-~~~-~g~i~~ir~a~~~~-----~PiLGIClG~Qll~va~Gg~v~g~qda~s~Ef~~~~-~~pvI~~m~eq~~~~~ 431 (535)
T 3nva_A 360 FGS-RGA-EGKIKAIKYAREHN-----IPFLGICFGFQLSIVEFARDVLGLSEANSTEINPNT-KDPVITLLDEQKNVTQ 431 (535)
T ss_dssp CSS-TTH-HHHHHHHHHHHHHT-----CCEEEETHHHHHHHHHHHHTTTCCTTCEETTTCTTC-SCEEEECBCSSSCBCS
T ss_pred CCC-ccH-HHHHHHHHHHHHcC-----CcEEEECcchhHHHHHhhccccCccCCcccccCCCC-CCCeeecchhcccccc
Confidence 863 222 22347788999989 99999999999999999998311121 21110 011 11100 0 00
Q ss_pred cCCcccc-----c-Cc-hhHHHhhCCccE-EEEEEeeecCccchhhhccCCCCcEEEEEEccCCCCeEEEEEEeCCCc-E
Q 023716 199 IEGTVFQ-----R-FP-PKLIKKLSTDCL-VMQNHHYGISPETLRKNLDLSRFFKMLTTSADEDNKVYVSTVQAYDYP-V 269 (278)
Q Consensus 199 ~~~~lf~-----~-~p-~~l~~~l~~~~~-~~~~H~~~i~~~~~~~~~~L~~~~~vlA~s~D~~g~~~ieaie~~~~p-i 269 (278)
.++++.- . .+ +.+.+.++.+.+ ..+.|+|.+++...|.+. +++|+++|++.| | .||+||++++| +
T Consensus 432 ~ggtmrlg~h~v~l~~gS~L~~iyG~~~I~erHrHryeVNs~h~q~l~--~~GL~vsA~s~D--G--~IEAIE~~~~pf~ 505 (535)
T 3nva_A 432 LGGTMRLGAQKIILKEGTIAYQLYGKKVVYERHRHRYEVNPKYVDILE--DAGLVVSGISEN--G--LVEIIELPSNKFF 505 (535)
T ss_dssp SCCCCEEEEEEEEECTTSHHHHHHTSSEEEEEEEECCEECHHHHHHHH--HTTCEEEEECTT--C--CEEEEECTTSSCE
T ss_pred cCCccccCceEEEEcCCCcHHHHhCCCeeeecccccceechHHHhhcc--cCCeEEEEEeCC--C--CEEEEEeCCCCcE
Confidence 1222210 0 12 335666766543 345677888887767665 689999999987 8 89999999999 5
Q ss_pred EEEeecCCC
Q 023716 270 TAFQWHPEV 278 (278)
Q Consensus 270 ~GvQfHPEk 278 (278)
+|||||||.
T Consensus 506 vGVQfHPE~ 514 (535)
T 3nva_A 506 VATQAHPEF 514 (535)
T ss_dssp EEESSCGGG
T ss_pred EEEEeCCEe
Confidence 999999994
No 26
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=99.85 E-value=5.4e-22 Score=172.84 Aligned_cols=174 Identities=15% Similarity=0.219 Sum_probs=105.4
Q ss_pred CCCCCCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCc
Q 023716 54 DSKLNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDG 133 (278)
Q Consensus 54 ~~~~~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p 133 (278)
.|..+.++.|+|+..++ +| .+++++|+++|+.+++++. .+ .++.+||||||||.+...
T Consensus 17 ~~~~~~~~~I~il~~~~-------------~~--~~~~~~l~~~G~~~~~~~~---~~----~l~~~Dglil~GG~~~~~ 74 (219)
T 1q7r_A 17 NLYFQSNMKIGVLGLQG-------------AV--REHVRAIEACGAEAVIVKK---SE----QLEGLDGLVLPGGESTTM 74 (219)
T ss_dssp -CCCCCCCEEEEESCGG-------------GC--HHHHHHHHHTTCEEEEECS---GG----GGTTCSEEEECCCCHHHH
T ss_pred CCCCCCCCEEEEEeCCC-------------Cc--HHHHHHHHHCCCEEEEECC---HH----HHhhCCEEEECCCChHHH
Confidence 33445678999996431 12 2467899999999999874 22 256899999999975210
Q ss_pred -cchHH--HHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCcc-cccccccccccccccceeccccc-CCcccccCc
Q 023716 134 -LYYAI--VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDK-NILESFNAADQASTLQFMENTSI-EGTVFQRFP 208 (278)
Q Consensus 134 -~~~~~--~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~~-~il~~~~~~~~~~~l~~~~~~~~-~~~lf~~~p 208 (278)
.+... ..++++.+++++ +||||||+|||+|+.++||+. .-+..++......+..... ... ....|.
T Consensus 75 ~~~~~~~~~~~~i~~~~~~~-----~PilGIC~G~QlL~~~~gg~~~~~lg~~~~~~~~~~~g~~~-~~~~~~~~~~--- 145 (219)
T 1q7r_A 75 RRLIDRYGLMEPLKQFAAAG-----KPMFGTCAGLILLAKRIVGYDEPHLGLMDITVERNSFGRQR-ESFEAELSIK--- 145 (219)
T ss_dssp HHHHHHTTCHHHHHHHHHTT-----CCEEEETTHHHHHEEEEESSCCCCCCCEEEEEECHHHHCCC-CCEEEEEEET---
T ss_pred HHHhhhhHHHHHHHHHHHcC-----CeEEEECHHHHHHHHHhCCCCcCCcCccceEEEecCCCccc-cceecCcccC---
Confidence 11001 136778888888 999999999999999999862 0001111000000000000 000 001111
Q ss_pred hhHHHhhCCccEEEEEEeeecCccchhhhccCCCCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 209 PKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 209 ~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
.++++...+..|++ .+..++++++++|++ | | ++++++. .+++|+|||||+
T Consensus 146 -----g~g~~~~~~~~h~~--------~v~~l~~~~~v~a~s-d--g--~~ea~~~--~~i~GvQfHPE~ 195 (219)
T 1q7r_A 146 -----GVGDGFVGVFIRAP--------HIVEAGDGVDVLATY-N--D--RIVAARQ--GQFLGCSFHPEL 195 (219)
T ss_dssp -----TTEEEEEEEESSCC--------EEEEECTTCEEEEEE-T--T--EEEEEEE--TTEEEESSCGGG
T ss_pred -----CCCCceEEEEEecc--------eeeccCCCcEEEEEc-C--C--EEEEEEE--CCEEEEEECccc
Confidence 12112223344553 345678999999998 6 7 7999997 479999999995
No 27
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=99.85 E-value=2.9e-21 Score=188.04 Aligned_cols=195 Identities=19% Similarity=0.278 Sum_probs=118.9
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCC----eEEEEeCCCChhhHH----HhcccCCEEEEcCCCC
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGA----RVIPLIYNEPEDVLF----EKLELVNGVLYTGGWA 130 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga----~~v~i~~~~~~~~l~----~~l~~iDGlIl~GG~~ 130 (278)
.++.||+.+..-. -.+.| .|++++|+.+|+ ++.+++++ .+++. +.++.+||||||||+.
T Consensus 288 ~~v~i~~vGkyv~---------l~D~y--~Si~~aL~~~G~~~~~~V~i~~~d--~e~i~~~~~~~l~~~DGIilsGGpg 354 (545)
T 1s1m_A 288 SEVTIGMVGKYIE---------LPDAY--KSVIEALKHGGLKNRVSVNIKLID--SQDVETRGVEILKGLDAILVPGGFG 354 (545)
T ss_dssp EEEEEEEEESSCS---------SGGGG--HHHHHHHHHHHHHHTEEEEEEEEE--HHHHHHHCTTTTTTCSEEEECCCCS
T ss_pred CeEEeCCcCCeEE---------EEEHH--HHHHHHHHHhCcccCCeEEEccCC--HHHhhhhhhhhhhcCCEEEECCCCC
Confidence 4578998764311 12334 578888888775 45555553 22332 3467899999999987
Q ss_pred CCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCccccccccc-c---ccccccc-cee----------c
Q 023716 131 KDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFN-A---ADQASTL-QFM----------E 195 (278)
Q Consensus 131 ~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~~~il~~~~-~---~~~~~~l-~~~----------~ 195 (278)
. +.. .....+++++++.+ +|+||||+|||+|++++||+..-+.... . ++...++ .+. +
T Consensus 355 ~-~~~-~g~~~~i~~a~~~~-----~PiLGIClG~Qll~va~Gg~v~~l~~a~s~E~~~~~~hpvi~l~~~w~~~~g~~~ 427 (545)
T 1s1m_A 355 Y-RGV-EGMITTARFARENN-----IPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVE 427 (545)
T ss_dssp S-TTH-HHHHHHHHHHHHTT-----CCEEEETHHHHHHHHHHHHHHHCCTTCEETTTCSSCSCEEEECTTTCCCTTSCCC
T ss_pred C-ccc-hhhHHHHHHHHHCC-----CcEEEECChHHHHHHHhCCceecCCCCcccccCCCCCCceEEeeccccccccccc
Confidence 4 332 23347788888888 9999999999999999999842111110 0 0001111 100 0
Q ss_pred -cc---ccCCccc----c-c-Cchh-HHHhhCCccE-EEEEEeeecCccchhhhccCCCCcEEEEEEccCCCCeEEEEEE
Q 023716 196 -NT---SIEGTVF----Q-R-FPPK-LIKKLSTDCL-VMQNHHYGISPETLRKNLDLSRFFKMLTTSADEDNKVYVSTVQ 263 (278)
Q Consensus 196 -~~---~~~~~lf----~-~-~p~~-l~~~l~~~~~-~~~~H~~~i~~~~~~~~~~L~~~~~vlA~s~D~~g~~~ieaie 263 (278)
.. ..+++++ . . .+.. +.+.++...+ ..++|+|.+++...+.+. +++++++|++.| |. .+|+||
T Consensus 428 ~q~~~~~~ggtmrlG~~~v~l~~~s~l~~iyg~~~v~e~h~Hry~VNs~~~~~l~--~~gl~v~a~s~d--g~-~VEaie 502 (545)
T 1s1m_A 428 VRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIE--DAGLRVAGRSGD--DQ-LVEIIE 502 (545)
T ss_dssp ----------CCEEEEEEEEECTTCHHHHHTTSSEEEEEEEECCEECHHHHHHHH--HTTCEEEEECSS--SC-CEEEEE
T ss_pred ccccccccCccccccceeeEeccCCHHHHhcCCceEEEecCcceEEChHHhhhcc--cCCeEEEEECCC--CC-ceEEEE
Confidence 00 0012211 0 0 1222 3344444432 356788878776665543 589999999987 43 799999
Q ss_pred eCCCcEE-EEeecCCC
Q 023716 264 AYDYPVT-AFQWHPEV 278 (278)
Q Consensus 264 ~~~~pi~-GvQfHPEk 278 (278)
++++|+| |||||||+
T Consensus 503 ~~~~p~flGVQFHPE~ 518 (545)
T 1s1m_A 503 VPNHPWFVACQFHPEF 518 (545)
T ss_dssp CTTSSSEEEESSCGGG
T ss_pred eCCCCEEEEEeCCCCC
Confidence 9999976 99999995
No 28
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=99.85 E-value=2.3e-21 Score=166.21 Aligned_cols=157 Identities=15% Similarity=0.082 Sum_probs=94.6
Q ss_pred HHHHHHHHHcC-----CeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccc--hHH--HHHHHHHHHHhcCCCCCCcE
Q 023716 88 ASYVKFVESAG-----ARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLY--YAI--VEKVFKKILEKNDAGDHFPL 158 (278)
Q Consensus 88 ~syv~~le~~G-----a~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~--~~~--~~~li~~al~~~~~g~~~PV 158 (278)
.+++++|+++| +.+++++..+ . +.+||||||||.+..... ... ..++++.+++++ +||
T Consensus 14 ~s~~~~l~~~G~~~~~~~~~~~~~~~-------~-~~~dglilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~-----~Pi 80 (201)
T 1gpw_B 14 MNLYRGVKRASENFEDVSIELVESPR-------N-DLYDLLFIPGVGHFGEGMRRLRENDLIDFVRKHVEDE-----RYV 80 (201)
T ss_dssp HHHHHHHHHHSTTBSSCEEEEECSCC-------S-SCCSEEEECCCSCSHHHHHHHHHTTCHHHHHHHHHTT-----CEE
T ss_pred HHHHHHHHHcCCCCCceEEEEECCCc-------c-cCCCEEEECCCCcHHHHHHHHHhhCHHHHHHHHHHcC-----CeE
Confidence 57889999999 8888887522 2 579999999975522111 111 236777777777 999
Q ss_pred EEEechHHHHHHHHh--CcccccccccccccccccceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhh
Q 023716 159 YAHCLGFELLTMIIS--KDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRK 236 (278)
Q Consensus 159 LGIClG~QlL~~~~G--g~~~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~ 236 (278)
||||+|||+|+.++| |+..-+.....+.........++.. ...++...+. +...++++|++.+
T Consensus 81 lGIC~G~Qll~~~~g~~G~~~~l~~~~g~v~~~~~~~~~~~g-~~~l~~~~~~-------~~~~v~~~H~~~v------- 145 (201)
T 1gpw_B 81 VGVCLGMQLLFEESEEAPGVKGLSLIEGNVVKLRSRRLPHMG-WNEVIFKDTF-------PNGYYYFVHTYRA------- 145 (201)
T ss_dssp EEETHHHHTTSSEETTEEEEECCCSSSEEEEECCCSSCSEEE-EEEEEESSSS-------CCEEEEEEESEEE-------
T ss_pred EEEChhHHHHHHhhccCCCCCCcceeeeEEEEcCCCCCCccc-ceeeEeccCC-------CCCeEEEECccee-------
Confidence 999999999999987 4311111111100000000000100 1233322211 2335677898755
Q ss_pred hccCCCCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 237 NLDLSRFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 237 ~~~L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
..+ +++++|++.+ +|. .++++++++ +++|+|||||+
T Consensus 146 -~~~--~~~vla~s~~-~g~-~~~a~~~~~-~i~gvQfHPE~ 181 (201)
T 1gpw_B 146 -VCE--EEHVLGTTEY-DGE-IFPSAVRKG-RILGFQFHPEK 181 (201)
T ss_dssp -EEC--GGGEEEEEEE-TTE-EEEEEEEET-TEEEESSCGGG
T ss_pred -ccC--CCEEEEEEcc-CCc-eEEEEEECC-CEEEEECCCcc
Confidence 223 5899999864 242 578888765 89999999995
No 29
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G
Probab=99.83 E-value=5.5e-21 Score=167.05 Aligned_cols=176 Identities=17% Similarity=0.179 Sum_probs=103.3
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHc---CCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCC-Ccc
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA---GARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK-DGL 134 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~---Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~-~p~ 134 (278)
.|++|||+...++ ..+|+++|+++ |+++++++. .+ .++.+||||||||.+. ...
T Consensus 2 ~~~~I~Il~~~~~---------------~~~~~~~l~~~~~~G~~~~~~~~---~~----~l~~~dglil~GG~~~~~~~ 59 (227)
T 2abw_A 2 SEITIGVLSLQGD---------------FEPHINHFIKLQIPSLNIIQVRN---VH----DLGLCDGLVIPGGESTTVRR 59 (227)
T ss_dssp CCEEEEEECTTSC---------------CHHHHHHHHTTCCTTEEEEEECS---HH----HHHTCSEEEECCSCHHHHHH
T ss_pred CCcEEEEEeCCCC---------------cHHHHHHHHHhccCCeEEEEEcC---cc----ccccCCEEEECCCcHHHHHH
Confidence 4689999986421 14689999999 999988863 22 2467999999999741 111
Q ss_pred chH----HHHHHHHHHHHh-cCCCCCCcEEEEechHHHHHHHHhCccccc--ccccccccccccceeccc--c----c-C
Q 023716 135 YYA----IVEKVFKKILEK-NDAGDHFPLYAHCLGFELLTMIISKDKNIL--ESFNAADQASTLQFMENT--S----I-E 200 (278)
Q Consensus 135 ~~~----~~~~li~~al~~-~~~g~~~PVLGIClG~QlL~~~~Gg~~~il--~~~~~~~~~~~l~~~~~~--~----~-~ 200 (278)
+.. ...++++.++++ + +||||||+|||+|+.++||+...- .... +....+....... . . .
T Consensus 60 ~~~~d~~~~~~~i~~~~~~~g-----~PilGIC~G~QlL~~~~gg~~~~~~~~~~~-~lG~~~~~~~~~~~g~~~~~~~~ 133 (227)
T 2abw_A 60 CCAYENDTLYNALVHFIHVLK-----KPIWGTCAGCILLSKNVENIKLYSNFGNKF-SFGGLDITICRNFYGSQNDSFIC 133 (227)
T ss_dssp HTTHHHHHHHHHHHHHHHTSC-----CCEEEETHHHHHTEEEEECCCSCCTTGGGS-CCCCEEEEEECCC----CCEEEE
T ss_pred HHHHhHHHHHHHHHHHHHhcC-----CEEEEECHHHHHHHHHhcCCcccccccccc-ccCceeEEEEecCCCcccccccc
Confidence 111 224667777777 7 999999999999999998862100 0010 0000111100000 0 0 0
Q ss_pred CcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccC-CCCcEEEEEEccC---CCCeEEEEEEeCCCcEEEEeecC
Q 023716 201 GTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDL-SRFFKMLTTSADE---DNKVYVSTVQAYDYPVTAFQWHP 276 (278)
Q Consensus 201 ~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L-~~~~~vlA~s~D~---~g~~~ieaie~~~~pi~GvQfHP 276 (278)
...+..++. ..++....+..|++. +..+ +++++++|++... ++ .+++++. .+++|+||||
T Consensus 134 ~~~~~~~~~----~~g~~~~~~~~h~~~--------v~~~~~~~~~vla~~~~~~~g~~--~~~a~~~--~~v~gvQfHP 197 (227)
T 2abw_A 134 SLNIISDSS----AFKKDLTAACIRAPY--------IREILSDEVKVLATFSHESYGPN--IIAAVEQ--NNCLGTVFHP 197 (227)
T ss_dssp ECEECCCCT----TCCTTCEEEEESCCE--------EEEECCTTCEEEEEEEETTTEEE--EEEEEEE--TTEEEESSCG
T ss_pred ccccccccc----cCCCceeEEEEEcce--------EeecCCCCcEEEEEcccccCCCC--ceEEEEE--CCEEEEEECC
Confidence 000111100 001222334455542 3445 8899999998510 25 7889985 4699999999
Q ss_pred CC
Q 023716 277 EV 278 (278)
Q Consensus 277 Ek 278 (278)
|+
T Consensus 198 E~ 199 (227)
T 2abw_A 198 EL 199 (227)
T ss_dssp GG
T ss_pred ee
Confidence 95
No 30
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=99.82 E-value=6.8e-21 Score=186.94 Aligned_cols=177 Identities=15% Similarity=0.150 Sum_probs=106.2
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHH-
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAI- 138 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~- 138 (278)
+|.|+|+.... + + ..+++++|+++|+.+++++.. +. ..++.+||||||||++..+.....
T Consensus 4 m~~I~Iid~~~-g--------~-----~~~~~~~l~~~G~~~~vv~~~---~~--~~l~~~DglILpGgG~~~~~~~~l~ 64 (555)
T 1jvn_A 4 MPVVHVIDVES-G--------N-----LQSLTNAIEHLGYEVQLVKSP---KD--FNISGTSRLILPGVGNYGHFVDNLF 64 (555)
T ss_dssp SCEEEEECCSC-S--------C-----CHHHHHHHHHTTCEEEEESSG---GG--CCSTTCSCEEEEECSCHHHHHHHHH
T ss_pred CCEEEEEECCC-C--------C-----HHHHHHHHHHCCCEEEEECCc---cc--cccccCCEEEECCCCchHhHhhhhh
Confidence 58999996421 0 1 146889999999999998742 21 236789999999965532221111
Q ss_pred ---HHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHH---hCcccccccccc---ccc--cccc-ceecc-cccCCcccc
Q 023716 139 ---VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMII---SKDKNILESFNA---ADQ--ASTL-QFMEN-TSIEGTVFQ 205 (278)
Q Consensus 139 ---~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~---Gg~~~il~~~~~---~~~--~~~l-~~~~~-~~~~~~lf~ 205 (278)
..++++.+++++ +||||||+|||+|+.++ |+.+.+ ..+.. +.. ..+. .+..+ +...+.+|.
T Consensus 65 ~~~~~~~i~~~~~~g-----~PiLGIC~G~QlL~~a~~egg~~~~L-g~lgg~v~~~~~~~~~~~~~G~~~v~~~~~L~~ 138 (555)
T 1jvn_A 65 NRGFEKPIREYIESG-----KPIMGIXVGLQALFAGSVESPKSTGL-NYIDFKLSRFDDSEKPVPEIGWNSCIPSENLFF 138 (555)
T ss_dssp HTTCHHHHHHHHHTT-----CCEEEEEHHHHTTEEEETTBTTCCCC-CSEEEEEEECCTTTSCSSEEEEECCCCCTTCCT
T ss_pred hccHHHHHHHHHHcC-----CcEEEEchhhhhhhhhhhcCCCcccc-CCCCcEEEECCcCCCCCccccceEEEEcCHHHh
Confidence 236777777777 99999999999999987 322211 11111 000 0011 00001 111134444
Q ss_pred cCchhHHHhhCCccEEEEEEeeecCccchhhhcc----CCCCcEEEEEEccC-CCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 206 RFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLD----LSRFFKMLTTSADE-DNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 206 ~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~----L~~~~~vlA~s~D~-~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
.++ +...++++|++.+ +.+.. |++++.++|++... |+ ++++++. .+++|+|||||+
T Consensus 139 ~l~--------~~~~~~~vHS~~~-----~~i~~~~~~L~~g~~vlA~s~~~~D~--~i~ai~~--~~i~GvQFHPE~ 199 (555)
T 1jvn_A 139 GLD--------PYKRYYFVHSFAA-----ILNSEKKKNLENDGWKIAKAKYGSEE--FIAAVNK--NNIFATQFHPEK 199 (555)
T ss_dssp TCC--------TTSCEEEEESEEC-----BCCHHHHHHHHHTTCEEEEEEETTEE--EEEEEEE--TTEEEESSBGGG
T ss_pred hCC--------CCceEEEEEEEEE-----EecccccccCCCCCEEEEEEcCCCCC--eEEEEEe--CCEEEEEeCcEe
Confidence 333 2224556666654 32222 36778899988631 14 8999993 589999999995
No 31
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=99.81 E-value=4.7e-20 Score=159.26 Aligned_cols=153 Identities=17% Similarity=0.266 Sum_probs=91.5
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHH------HHHHHHHHHHhcCCCCCCcEEEE
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAI------VEKVFKKILEKNDAGDHFPLYAH 161 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~------~~~li~~al~~~~~g~~~PVLGI 161 (278)
.++.++|+++|+.+++++. .++ ++.+||||||||. +..++. ..++++.+++++ +|||||
T Consensus 33 ~~~~~~l~~~g~~~~~~~~---~~~----l~~~d~iil~GG~---~~~~~~~~~~~~~~~~i~~~~~~g-----~PilGI 97 (208)
T 2iss_D 33 REHVEALHKLGVETLIVKL---PEQ----LDMVDGLILPGGE---STTMIRILKEMDMDEKLVERINNG-----LPVFAT 97 (208)
T ss_dssp HHHHHHHHHTTCEEEEECS---GGG----GGGCSEEEECSSC---HHHHHHHHHHTTCHHHHHHHHHTT-----CCEEEE
T ss_pred HHHHHHHHHCCCEEEEeCC---hHH----HhhCCEEEECCCc---HHHHHhhhhhhhHHHHHHHHHHCC-----CeEEEE
Confidence 4578899999999988863 222 5679999999994 332322 136777777777 999999
Q ss_pred echHHHHHHHHhCcc-cccccccccccccccceecccccCCcccccCchhHHHhhCCccE-EEEEEeeecCccchhhhcc
Q 023716 162 CLGFELLTMIISKDK-NILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCL-VMQNHHYGISPETLRKNLD 239 (278)
Q Consensus 162 ClG~QlL~~~~Gg~~-~il~~~~~~~~~~~l~~~~~~~~~~~lf~~~p~~l~~~l~~~~~-~~~~H~~~i~~~~~~~~~~ 239 (278)
|+|+|+|+.++||+. .-+..++......+..... .. +. +...+..++..++ .+..|++ .+..
T Consensus 98 C~G~QlL~~~~gg~~~~~lg~~~~~v~~~~~g~~~-----~~-~~--~~~~~~~~~~~~~~~~~~h~~--------~v~~ 161 (208)
T 2iss_D 98 CAGVILLAKRIKNYSQEKLGVLDITVERNAYGRQV-----ES-FE--TFVEIPAVGKDPFRAIFIRAP--------RIVE 161 (208)
T ss_dssp THHHHHHEEEEC---CCCCCCEEEEEETTTTCSGG-----GC-EE--EEECCGGGCSSCEEEEESSCC--------EEEE
T ss_pred CHHHHHHHHHcCCCCCCCccccceEEEecCCCccc-----cc-cc--CCcccccCCCCceEEEEEeCc--------cccc
Confidence 999999999999851 0001111000000000000 00 00 0001122332223 3334553 3445
Q ss_pred CCCCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 240 LSRFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 240 L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
++++++++|++ | | .+++++. .+++|+|||||+
T Consensus 162 ~~~~~~v~a~~-d--~--~~~a~~~--~~i~GvQfHPE~ 193 (208)
T 2iss_D 162 TGKNVEILATY-D--Y--DPVLVKE--GNILACTFHPEL 193 (208)
T ss_dssp ECSSCEEEEEE-T--T--EEEEEEE--TTEEEESSCGGG
T ss_pred CCCCcEEEEEE-C--C--EEEEEEE--CCEEEEEeCCCc
Confidence 68899999998 5 6 8999985 379999999995
No 32
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=99.81 E-value=1.2e-19 Score=154.94 Aligned_cols=154 Identities=16% Similarity=0.248 Sum_probs=92.8
Q ss_pred HHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCC-ccchHH--HHHHHHHHHHhcCCCCCCcEEEEechH
Q 023716 89 SYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKD-GLYYAI--VEKVFKKILEKNDAGDHFPLYAHCLGF 165 (278)
Q Consensus 89 syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~-p~~~~~--~~~li~~al~~~~~g~~~PVLGIClG~ 165 (278)
+++++++++|+.+++++. .+ .++.+||||||||.... ..+... ..++++.+++++ +|+||||+|+
T Consensus 15 ~~~~~l~~~g~~~~~~~~---~~----~l~~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~~-----~pilgIC~G~ 82 (196)
T 2nv0_A 15 EHIHAIEACGAAGLVVKR---PE----QLNEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQG-----KPMFGTCAGL 82 (196)
T ss_dssp HHHHHHHHTTCEEEEECS---GG----GGGGCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTT-----CCEEEETHHH
T ss_pred HHHHHHHHCCCEEEEeCC---hH----HHhhCCEEEECCCChhhHHHHhhhHHHHHHHHHHHHCC-----CcEEEECHHH
Confidence 466899999999988864 22 25679999999996411 011011 146777787777 9999999999
Q ss_pred HHHHHHHhCcccccccccccccccccceecccccCCc--ccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCCCC
Q 023716 166 ELLTMIISKDKNILESFNAADQASTLQFMENTSIEGT--VFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRF 243 (278)
Q Consensus 166 QlL~~~~Gg~~~il~~~~~~~~~~~l~~~~~~~~~~~--lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~~ 243 (278)
|+|+.++||+. ..... ..+...... ..+.. .+. .+..+..++++...+..|++ .+..++++
T Consensus 83 q~l~~~~gg~~--~~~lg----~~~~~~~~~-~~g~~~~~~~--~~~~~~~~g~~~~~~~~h~~--------~v~~~~~~ 145 (196)
T 2nv0_A 83 IILAKEIAGSD--NPHLG----LLNVVVERN-SFGRQVDSFE--ADLTIKGLDEPFTGVFIRAP--------HILEAGEN 145 (196)
T ss_dssp HHHSBCCC------CCCC----CSCEEEECC-CSCTTTSEEE--EEECCTTCSSCEEEEEESCC--------EEEEECTT
T ss_pred HHHHHHhcCCC--CCccc----CCceeEecc-CCCccccccc--CCcccccCCCceEEEEEecc--------eecccCCC
Confidence 99999999862 11110 001110000 00000 000 00011123333344556764 34457889
Q ss_pred cEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 244 FKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 244 ~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
++++|++ | | .+++++. .+++|+|||||+
T Consensus 146 ~~v~a~~-d--~--~~~a~~~--~~~~gvQfHPE~ 173 (196)
T 2nv0_A 146 VEVLSEH-N--G--RIVAAKQ--GQFLGCSFHPEL 173 (196)
T ss_dssp CEEEEEE-T--T--EEEEEEE--TTEEEESSCTTS
T ss_pred cEEEEEE-C--C--EEEEEEE--CCEEEEEECCcc
Confidence 9999998 5 6 7899986 479999999995
No 33
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=99.80 E-value=1.1e-19 Score=155.86 Aligned_cols=154 Identities=18% Similarity=0.191 Sum_probs=91.3
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccch----HHHHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYY----AIVEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~----~~~~~li~~al~~~~~g~~~PVLGICl 163 (278)
.+++++|+++|+.+++++.+ + .++.+||||||||.+..+.+. ....++++.+++++ +||||||+
T Consensus 16 ~~~~~~l~~~G~~~~~~~~~---~----~l~~~d~lil~G~g~~~~~~~~l~~~~~~~~i~~~~~~~-----~PilGIC~ 83 (200)
T 1ka9_H 16 RSAAKALEAAGFSVAVAQDP---K----AHEEADLLVLPGQGHFGQVMRAFQESGFVERVRRHLERG-----LPFLGICV 83 (200)
T ss_dssp HHHHHHHHHTTCEEEEESST---T----SCSSCSEEEECCCSCHHHHHHTTSSSCTHHHHHHHHHTT-----CCEEECTH
T ss_pred HHHHHHHHHCCCeEEEecCh---H----HcccCCEEEECCCCcHHHHHHHHHhcCHHHHHHHHHHcC-----CeEEEEcH
Confidence 56789999999999998742 1 366899999999655222111 11346788888888 99999999
Q ss_pred hHHHHHHH---HhCcccccccccccccccc---c-ceecc-cccCCcccccCchhHHHhhCCccEEEEEEeeecCccchh
Q 023716 164 GFELLTMI---ISKDKNILESFNAADQAST---L-QFMEN-TSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLR 235 (278)
Q Consensus 164 G~QlL~~~---~Gg~~~il~~~~~~~~~~~---l-~~~~~-~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~ 235 (278)
|+|+|+.+ +||.+.+ ..++......+ . .+..+ +. +. + + ++.+.+ ..++++|++.+ +
T Consensus 84 G~Qll~~~~~~~Gg~~~l-~~~~g~v~~~~~~~~~~~G~~~v~-----~~--~-~-l~~~~~-~~~~~~Hs~~~-~---- 147 (200)
T 1ka9_H 84 GMQVLYEGSEEAPGVRGL-GLVPGEVRRFRAGRVPQMGWNALE-----FG--G-A-FAPLTG-RHFYFANSYYG-P---- 147 (200)
T ss_dssp HHHTTSSEETTSTTCCCC-CSSSSEEEECCSSSSSEEEEEECE-----EC--G-G-GGGGTT-CEEEEEESEEC-C----
T ss_pred HHHHHHHhccccCCcCCc-cccccEEEECCCCCCCceeEEEEE-----ec--h-h-hhcCCC-CCEEEeccccc-C----
Confidence 99999998 5753211 21111100000 0 01000 11 00 1 1 222333 46778888865 3
Q ss_pred hhccCCCCcEEEEEEccCCCCeEEEEEEeCCCcEEEEeecCCC
Q 023716 236 KNLDLSRFFKMLTTSADEDNKVYVSTVQAYDYPVTAFQWHPEV 278 (278)
Q Consensus 236 ~~~~L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~GvQfHPEk 278 (278)
+++. ++ |++.| +|.++ +++.+++ +++|+|||||+
T Consensus 148 ----~~~~-~v-a~s~~-~g~~~-~~~~~~~-~i~gvQfHPE~ 181 (200)
T 1ka9_H 148 ----LTPY-SL-GKGEY-EGTPF-TALLAKE-NLLAPQFHPEK 181 (200)
T ss_dssp ----CCTT-CC-EEEEE-TTEEE-EEEEECS-SEEEESSCTTS
T ss_pred ----CCCC-cE-EEEEe-CCeEE-EEEEeeC-CEEEEecCCCc
Confidence 1233 56 87754 24223 4444444 89999999996
No 34
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=99.63 E-value=3.1e-15 Score=136.11 Aligned_cols=137 Identities=12% Similarity=0.078 Sum_probs=90.8
Q ss_pred cccCCEEEEcCCCCC-----CccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCccccccccccccccccc
Q 023716 117 LELVNGVLYTGGWAK-----DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTL 191 (278)
Q Consensus 117 l~~iDGlIl~GG~~~-----~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~~~il~~~~~~~~~~~l 191 (278)
.+.+||+|+|||+.. +-.|+.+..++++++.++. +|+||||+|+|++..++||..... ....+.+..+.
T Consensus 97 ~~~~DglIITGap~~~~~~ed~~yw~el~~li~~~~~~~-----~~~lgIC~GaQ~~l~~~~G~~k~~-~~~K~~Gv~~~ 170 (301)
T 2vdj_A 97 NEKFDGLIITGAPVETLSFEEVDYWEELKRIMEYSKTNV-----TSTLHICWGAQAGLYHHYGVQKYP-LKEKMFGVFEH 170 (301)
T ss_dssp TSCEEEEEECCCTTTTSCGGGSTTHHHHHHHHHHHHHHE-----EEEEEETHHHHHHHHHHHCCCCEE-EEEEEEEEEEE
T ss_pred ccccCEEEECCCCCcCCCcccCchHHHHHHHHHHHHHcC-----CcEEEEcHHHHHHHHHhCCCcccc-CCCCEEEEEEE
Confidence 467999999999852 3466777889999999999 999999999999888877742111 11111111111
Q ss_pred ceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCCCCcEEEEEEccCCCCeEEEEEEeCCCcEEE
Q 023716 192 QFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKMLTTSADEDNKVYVSTVQAYDYPVTA 271 (278)
Q Consensus 192 ~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~G 271 (278)
..+. . .+.+|.+++ ....+.++||-.+.. +.+..++ +++++|.|.. +| ++++..++..++|
T Consensus 171 ~~~~--~-~~pL~~g~~--------~~f~~phsr~~~~~~---~~v~~~p-ga~vLA~S~~-~~---~~~~~~~~~~~~~ 231 (301)
T 2vdj_A 171 EVRE--Q-HVKLLQGFD--------ELFFAVHSRHTEVRE---SDIREVK-ELTLLANSEE-AG---VHLVIGQEGRQVF 231 (301)
T ss_dssp EECC--S-SCGGGTTCC--------SEEEEEEEEEEECCH---HHHHTCT-TEEEEEEETT-TE---EEEEEEGGGTEEE
T ss_pred EecC--C-CCccccCCC--------CceEeeeEeccCcCH---HHccCCC-CCEEEEeCCC-Cc---ceEEEecCCCEEE
Confidence 1111 1 344444433 333556666644433 3355665 9999999964 34 7888876778999
Q ss_pred EeecCCC
Q 023716 272 FQWHPEV 278 (278)
Q Consensus 272 vQfHPEk 278 (278)
+|||||.
T Consensus 232 vQgHpEy 238 (301)
T 2vdj_A 232 ALGHSEY 238 (301)
T ss_dssp ECSCTTC
T ss_pred EECCCCC
Confidence 9999994
No 35
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=99.61 E-value=8.9e-15 Score=133.50 Aligned_cols=136 Identities=10% Similarity=0.054 Sum_probs=88.4
Q ss_pred cccCCEEEEcCCCCC-----CccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHhCccccccccccccccccc
Q 023716 117 LELVNGVLYTGGWAK-----DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTL 191 (278)
Q Consensus 117 l~~iDGlIl~GG~~~-----~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~Gg~~~il~~~~~~~~~~~l 191 (278)
.+.+||+|+|||+.. +-.|+.+..++++++.++. +|+||||+|+|++..++||..... ....+.+..+.
T Consensus 109 ~~~~DglIITGsP~~~~~~ed~~yw~el~~li~~~~~~~-----~p~LGIC~GaQ~~l~~~~G~~k~~-~~~K~~Gv~~~ 182 (312)
T 2h2w_A 109 DRKFDGFIITGAPVELLPFEEVDYWEELTEIMEWSRHNV-----YSTMFICWAAQAGLYYFYGIPKYE-LPQKLSGVYKH 182 (312)
T ss_dssp TCCEEEEEECCCSCTTSCGGGSTTHHHHHHHHHHHHHHE-----EEEEEETHHHHHHHHHHHCCCCEE-EEEEEEEEEEE
T ss_pred ccCcCEEEECCCCCCCCCCccCchHHHHHHHHHHHHHcC-----CcEEEECHHHHHHHHHhCCCcccc-CCCCEEEEEEE
Confidence 367999999999852 3466777889999999999 999999999999888888842111 11111111111
Q ss_pred ceecccccCCcccccCchhHHHhhCCccEEEEEEeeecCccchhhhccCCCCcEEEEEEccCCCCeEEEEEEeCCCcEEE
Q 023716 192 QFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKMLTTSADEDNKVYVSTVQAYDYPVTA 271 (278)
Q Consensus 192 ~~~~~~~~~~~lf~~~p~~l~~~l~~~~~~~~~H~~~i~~~~~~~~~~L~~~~~vlA~s~D~~g~~~ieaie~~~~pi~G 271 (278)
..+ . .+.+|.++ .....+.++||..+..+ .+..+ ++++++|.|.. +| ++++..++..+++
T Consensus 183 ~~~---~-~~pL~~g~--------~~~f~vphsr~~e~~~~---~v~~~-pga~vLA~S~~-~~---~q~~~~~~~~~~~ 242 (312)
T 2h2w_A 183 RVA---K-DSVLFRGH--------DDFFWAPHSRYTEVKKE---DIDKV-PELEILAESDE-AG---VYVVANKSERQIF 242 (312)
T ss_dssp EES---S-CCGGGTTC--------CSEEEEEEEEEEECCHH---HHTTC-C-CEEEEEETT-TE---EEEEECSSSSEEE
T ss_pred EEc---C-CCccccCC--------CCceEeeEEeccccCHH---HccCC-CCCEEEEcCCC-Cc---ceEEEecCCCEEE
Confidence 111 1 23344333 33335566666544322 23334 58999999964 34 7888876778999
Q ss_pred EeecCCC
Q 023716 272 FQWHPEV 278 (278)
Q Consensus 272 vQfHPEk 278 (278)
+|||||.
T Consensus 243 vQgHPEy 249 (312)
T 2h2w_A 243 VTGHPEY 249 (312)
T ss_dssp ECSCTTC
T ss_pred EECCCCC
Confidence 9999994
No 36
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=99.08 E-value=3.8e-10 Score=119.36 Aligned_cols=94 Identities=14% Similarity=0.216 Sum_probs=63.4
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCcc----
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGL---- 134 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~---- 134 (278)
.||.|+|+..++.+. ..++.++++++|+.++.++... ...-+..++.+|+|+||||......
T Consensus 1046 ~~pkVaIi~~~G~N~-------------~~~~~~A~~~aG~~~~~v~~~d-l~~~~~~l~~~d~lvlPGGfSygD~l~~g 1111 (1303)
T 3ugj_A 1046 ARPKVAVLREQGVNS-------------HVEMAAAFHRAGFDAIDVHMSD-LLGGRIGLGNFHALVACGGFSYGDVLGAG 1111 (1303)
T ss_dssp CCCEEEEEECTTCCC-------------HHHHHHHHHHTTCEEEEEEHHH-HHTTSCCGGGCSEEEECCSCGGGGTTSTT
T ss_pred CCCEEEEEecCCcCC-------------HHHHHHHHHHhCCceEEEeecc-cccCcccHhhCCEEEECCCCcchhhhccc
Confidence 589999999887543 3578899999999999886421 0000124678999999999752110
Q ss_pred --ch------HHHHHHHHHHH-HhcCCCCCCcEEEEechHHHHHHH
Q 023716 135 --YY------AIVEKVFKKIL-EKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 135 --~~------~~~~~li~~al-~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
+. ....+.++..+ +++ +|+||||+|||+|+..
T Consensus 1112 ~~~a~~~l~~~~l~~~l~~~~~~~g-----~pvLGICnG~QlL~e~ 1152 (1303)
T 3ugj_A 1112 EGWAKSILFNHRVRDEFETFFHRPQ-----TLALGVCNGCQMMSNL 1152 (1303)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHHSSS-----CEEEEETHHHHHHHTT
T ss_pred hhHHHHHHhchhHHHHHHHHHHhCC-----CcEEEECHHHHHHHHh
Confidence 00 01123344433 345 9999999999999975
No 37
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.38 E-value=2.5e-07 Score=79.46 Aligned_cols=98 Identities=15% Similarity=0.063 Sum_probs=65.4
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCC-CChhhHHHhcccCCEEEEcCCCCCC--ccch
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN-EPEDVLFEKLELVNGVLYTGGWAKD--GLYY 136 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~-~~~~~l~~~l~~iDGlIl~GG~~~~--p~~~ 136 (278)
.|.|++...-... .....|+ .++.+++++.|+.+..+... .+.++..+.++.+|+|++|||.... ..+.
T Consensus 27 ~~~i~~Ip~As~~-------~~~~~~~-~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~ad~I~l~GG~~~~l~~~L~ 98 (206)
T 3l4e_A 27 GKTVTFIPTASTV-------EEVTFYV-EAGKKALESLGLLVEELDIATESLGEITTKLRKNDFIYVTGGNTFFLLQELK 98 (206)
T ss_dssp TCEEEEECGGGGG-------CSCCHHH-HHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHHSSEEEECCSCHHHHHHHHH
T ss_pred CCEEEEECCCCCC-------CCHHHHH-HHHHHHHHHcCCeEEEEEecCCChHHHHHHHHhCCEEEECCCCHHHHHHHHH
Confidence 3788887643211 1123454 67899999999998877432 2445555678899999999986521 0111
Q ss_pred HH-HHHHHHHHHHhcCCCCCCcEEEEechHHHHHH
Q 023716 137 AI-VEKVFKKILEKNDAGDHFPLYAHCLGFELLTM 170 (278)
Q Consensus 137 ~~-~~~li~~al~~~~~g~~~PVLGIClG~QlL~~ 170 (278)
+. ..+.++.+++++ +|++|||.|+|+++.
T Consensus 99 ~~gl~~~l~~~~~~G-----~p~~G~sAGa~~l~~ 128 (206)
T 3l4e_A 99 RTGADKLILEEIAAG-----KLYIGESAGAVITSP 128 (206)
T ss_dssp HHTHHHHHHHHHHTT-----CEEEEETHHHHTTSS
T ss_pred HCChHHHHHHHHHcC-----CeEEEECHHHHHhcc
Confidence 11 235667677777 999999999999965
No 38
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=98.33 E-value=9.1e-07 Score=77.08 Aligned_cols=95 Identities=12% Similarity=0.065 Sum_probs=63.4
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHH
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAI 138 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~ 138 (278)
.++.|+|...-... .....|+ .++.+++++.|+.++.+....+ ..+.++.+|+|+||||... ...+.
T Consensus 30 ~~~~i~iI~~a~~~-------~~~~~~~-~~~~~al~~lG~~~~~v~~~~d---~~~~l~~ad~I~lpGG~~~--~~~~~ 96 (229)
T 1fy2_A 30 GRRSAVFIPFAGVT-------QTWDEYT-DKTAEVLAPLGVNVTGIHRVAD---PLAAIEKAEIIIVGGGNTF--QLLKE 96 (229)
T ss_dssp TCCEEEEECTTCCS-------SCHHHHH-HHHHHHHGGGTCEEEETTSSSC---HHHHHHHCSEEEECCSCHH--HHHHH
T ss_pred CCCeEEEEECCCCC-------CCHHHHH-HHHHHHHHHCCCEEEEEecccc---HHHHHhcCCEEEECCCcHH--HHHHH
Confidence 45889988654211 1124454 6788999999998877643222 2345678999999998641 11111
Q ss_pred -----HHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 139 -----VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 139 -----~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
..+.++.+++++ +|++|||.|||+|+..
T Consensus 97 l~~~gl~~~l~~~~~~G-----~p~~G~sAG~~~l~~~ 129 (229)
T 1fy2_A 97 SRERGLLAPMADRVKRG-----ALYIGWSAGANLACPT 129 (229)
T ss_dssp HHHTTCHHHHHHHHHTT-----CEEEEETHHHHHTSSB
T ss_pred HHHCChHHHHHHHHHcC-----CEEEEECHHHHhhccc
Confidence 135666666677 9999999999999764
No 39
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=97.87 E-value=5.8e-05 Score=63.51 Aligned_cols=96 Identities=18% Similarity=0.178 Sum_probs=62.8
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCCh---------h-----hHHH-hcccCCEEE
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE---------D-----VLFE-KLELVNGVL 124 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~---------~-----~l~~-~l~~iDGlI 124 (278)
...|+|+..++... .. .....+.++++|.++.++..+..+ . .+.+ ..+.+|+|+
T Consensus 23 ~~kV~ill~~g~~~---------~e--~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~li 91 (193)
T 1oi4_A 23 SKKIAVLITDEFED---------SE--FTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALL 91 (193)
T ss_dssp CCEEEEECCTTBCT---------HH--HHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEE
T ss_pred CCEEEEEECCCCCH---------HH--HHHHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEE
Confidence 35799998764211 11 234678899999998888654321 0 1111 124689999
Q ss_pred EcCCCCCCc-cchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 125 YTGGWAKDG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 125 l~GG~~~~p-~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
+|||..... .......++++.+.+++ +||.|||.|.++|+.+
T Consensus 92 vpGG~~~~~l~~~~~l~~~l~~~~~~g-----k~i~aIC~G~~lLa~a 134 (193)
T 1oi4_A 92 LPGGHSPDYLRGDNRFVTFTRDFVNSG-----KPVFAICHGPQLLISA 134 (193)
T ss_dssp ECCBTHHHHHTTSHHHHHHHHHHHHTT-----CCEEEETTTHHHHHHH
T ss_pred ECCCcCHHHhhhCHHHHHHHHHHHHcC-----CEEEEECHHHHHHHHC
Confidence 999954211 11233457777777777 9999999999999875
No 40
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=97.32 E-value=0.0008 Score=56.05 Aligned_cols=100 Identities=14% Similarity=0.060 Sum_probs=64.2
Q ss_pred CCCCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCC-----------h-hhHHH-hcccCCE
Q 023716 56 KLNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP-----------E-DVLFE-KLELVNG 122 (278)
Q Consensus 56 ~~~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~-----------~-~~l~~-~l~~iDG 122 (278)
+...+.+|.|+...+- ....+ ..-++.|+++|..+.++..+.. . ..+.+ ..+++|+
T Consensus 4 m~~t~~~v~il~~~gF---------e~~E~--~~p~~~l~~ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~yD~ 72 (177)
T 4hcj_A 4 MGKTNNILYVMSGQNF---------QDEEY--FESKKIFESAGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVEFDA 72 (177)
T ss_dssp -CCCCEEEEECCSEEE---------CHHHH--HHHHHHHHHTTCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGGCSE
T ss_pred cccCCCEEEEECCCCc---------cHHHH--HHHHHHHHHCCCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhHCCE
Confidence 3445678888875431 11222 2355788999999988865431 0 01122 1356899
Q ss_pred EEEcCCCCCCccc-hHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 123 VLYTGGWAKDGLY-YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 123 lIl~GG~~~~p~~-~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
|++|||....... .....++++.+.+++ +||.+||-|-.+|+.+
T Consensus 73 liiPGG~g~~~l~~~~~~~~~l~~~~~~~-----k~iaaIC~g~~~La~a 117 (177)
T 4hcj_A 73 VVFVGGIGCITLWDDWRTQGLAKLFLDNQ-----KIVAGIGSGVVIMANA 117 (177)
T ss_dssp EEECCSGGGGGGTTCHHHHHHHHHHHHTT-----CEEEEETTHHHHHHHT
T ss_pred EEECCCccHHHHhhCHHHHHHHHHHHHhC-----CEEEEecccHHHHHHC
Confidence 9999996521111 123457888888888 9999999999998764
No 41
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=97.24 E-value=0.0007 Score=56.78 Aligned_cols=95 Identities=16% Similarity=0.085 Sum_probs=62.0
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCC-------------hhhHHHh--cccCCEEEE
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP-------------EDVLFEK--LELVNGVLY 125 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~-------------~~~l~~~--l~~iDGlIl 125 (278)
..|+|+..++-. ...+ ...++.++++|.++..+..+.. ...+.+. ...+|.|++
T Consensus 4 ~~v~ill~~g~~---------~~e~--~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~liv 72 (197)
T 2rk3_A 4 KRALVILAKGAE---------EMET--VIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVL 72 (197)
T ss_dssp CEEEEEECTTCC---------HHHH--HHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEE
T ss_pred CEEEEEECCCCc---------HHHH--HHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEE
Confidence 468888776421 1122 3466889999999888865421 1123332 267899999
Q ss_pred cCCCC-CC-ccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 126 TGGWA-KD-GLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 126 ~GG~~-~~-p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
|||.. .. -.......++++.+.+++ +||.+||-|.++|+.+
T Consensus 73 pGG~~~~~~l~~~~~~~~~l~~~~~~g-----k~i~aiC~G~~~La~a 115 (197)
T 2rk3_A 73 PGGNLGAQNLSESAAVKEILKEQENRK-----GLIATICAGPTALLAH 115 (197)
T ss_dssp CCCHHHHHHHHHCHHHHHHHHHHHHTT-----CEEEEETTTHHHHHHT
T ss_pred CCCchhHHHhhhCHHHHHHHHHHHHcC-----CEEEEECHHHHHHHHC
Confidence 99963 10 011123446777777777 9999999999999875
No 42
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=97.22 E-value=0.0011 Score=53.94 Aligned_cols=95 Identities=13% Similarity=0.161 Sum_probs=61.2
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCCh------------hhHHHh-cccCCEEEEcC
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE------------DVLFEK-LELVNGVLYTG 127 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~------------~~l~~~-l~~iDGlIl~G 127 (278)
..|+|+..++-. ... .....+.++.+|.++..+..+... ..+.+. ...+|.|++||
T Consensus 3 ~ki~il~~~g~~---------~~e--~~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpG 71 (168)
T 3l18_A 3 MKVLFLSADGFE---------DLE--LIYPLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPG 71 (168)
T ss_dssp CEEEEECCTTBC---------HHH--HHHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECC
T ss_pred cEEEEEeCCCcc---------HHH--HHHHHHHHHHCCCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECC
Confidence 468898876421 112 234668889999998887554210 001111 23589999999
Q ss_pred CCCCCc-cchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 128 GWAKDG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 128 G~~~~p-~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
|..... .......++++.+.+++ +||.+||-|.++|+.+
T Consensus 72 G~~~~~~~~~~~l~~~l~~~~~~~-----k~i~aiC~G~~~La~a 111 (168)
T 3l18_A 72 GKAPEIVRLNEKAVMITRRMFEDD-----KPVASICHGPQILISA 111 (168)
T ss_dssp BSHHHHHTTCHHHHHHHHHHHHTT-----CCEEEETTTHHHHHHT
T ss_pred CcCHHHhccCHHHHHHHHHHHHCC-----CEEEEECHhHHHHHHC
Confidence 974211 11223457778788878 9999999999999875
No 43
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=97.16 E-value=0.0015 Score=54.31 Aligned_cols=97 Identities=22% Similarity=0.212 Sum_probs=60.8
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCCh-----------------hhHHHh-cccC
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE-----------------DVLFEK-LELV 120 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~-----------------~~l~~~-l~~i 120 (278)
....|+|+..++.. ...+ ....+.++.+|.++..+..+..+ ..+.+. ...+
T Consensus 8 ~~~~v~il~~~g~~---------~~e~--~~~~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~ 76 (190)
T 2vrn_A 8 TGKKIAILAADGVE---------EIEL--TSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDY 76 (190)
T ss_dssp TTCEEEEECCTTCB---------HHHH--HHHHHHHHHTTCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGGC
T ss_pred CCCEEEEEeCCCCC---------HHHH--HHHHHHHHHCCCEEEEEecCCCccccccccccCCcEEeCCCChhhCChhhC
Confidence 34579999765321 1122 34567888999988777543210 011111 2468
Q ss_pred CEEEEcCCC-CCCc-cchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 121 NGVLYTGGW-AKDG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 121 DGlIl~GG~-~~~p-~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
|.||+|||. .... .......++++.+.+++ +||.+||-|.++|+.+
T Consensus 77 D~livpGG~~~~~~~~~~~~l~~~l~~~~~~g-----k~i~aiC~G~~~La~a 124 (190)
T 2vrn_A 77 DGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAG-----KPIAAICHGPWSLSET 124 (190)
T ss_dssp SEEEECCCTHHHHHHTTCHHHHHHHHHHHHTT-----CCEEEC-CTTHHHHHT
T ss_pred CEEEECCCchhHHHHhhCHHHHHHHHHHHHcC-----CEEEEECHhHHHHHhC
Confidence 999999996 2111 11234457788888777 9999999999999875
No 44
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=97.08 E-value=0.003 Score=53.76 Aligned_cols=96 Identities=17% Similarity=0.067 Sum_probs=62.1
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHH--------HcCCeEEEEeCCCC-----------hh-hHHHh-cc
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVE--------SAGARVIPLIYNEP-----------ED-VLFEK-LE 118 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le--------~~Ga~~v~i~~~~~-----------~~-~l~~~-l~ 118 (278)
.+.|+|+..++-... .+ ...++.++ +.|.++..+..+.. .+ .+.+. .+
T Consensus 5 m~~v~ill~~g~~~~---------e~--~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~~~~~~~~~ 73 (212)
T 3efe_A 5 TKKAFLYVFNTMSDW---------EY--GYLIAELNSGRYFKKDLAPLKVITVGANKEMITTMGGLRIKPDISLDECTLE 73 (212)
T ss_dssp CCCEEEEECTTCCTT---------TT--HHHHHHHHHCTTSCTTCCCCCEEEEESSSCCEECTTCCEECCSEEGGGCCCC
T ss_pred ccEEEEEECCCccHH---------HH--HHHHHHHHhhhccccCCCCeEEEEEECCCCeEEcCCCCEEecCcCHHHCCcc
Confidence 346899887753221 11 34556777 56788877755421 00 11221 23
Q ss_pred cCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 119 LVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 119 ~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
.+|.|++|||............++++.+.+++ ++|.+||-|..+|+.+
T Consensus 74 ~~D~livpGG~~~~~~~~~~l~~~l~~~~~~g-----k~iaaiC~G~~~La~a 121 (212)
T 3efe_A 74 SKDLLILPGGTTWSEEIHQPILERIGQALKIG-----TIVAAICGATDALANM 121 (212)
T ss_dssp TTCEEEECCCSCTTSGGGHHHHHHHHHHHHHT-----CEEEEETHHHHHHHHT
T ss_pred CCCEEEECCCCccccccCHHHHHHHHHHHHCC-----CEEEEEcHHHHHHHHc
Confidence 78999999997633223334557888888888 9999999999998875
No 45
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=96.99 E-value=0.002 Score=55.55 Aligned_cols=82 Identities=12% Similarity=0.191 Sum_probs=55.8
Q ss_pred HHHHHHHHcCCeEEEEeCCCCh------------------------------hhHHHh-cccCCEEEEcCCCCCC---cc
Q 023716 89 SYVKFVESAGARVIPLIYNEPE------------------------------DVLFEK-LELVNGVLYTGGWAKD---GL 134 (278)
Q Consensus 89 syv~~le~~Ga~~v~i~~~~~~------------------------------~~l~~~-l~~iDGlIl~GG~~~~---p~ 134 (278)
..++.|+++|.++..+..+... ..+.+. .+.+|.|++|||.... ..
T Consensus 29 ~p~~~l~~ag~~v~~~s~~g~~~~v~d~~s~~~~~~~~g~~i~~~~~~~~~~~~l~~~~~~~~D~livpGG~~~~~~~~~ 108 (232)
T 1vhq_A 29 LTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSN 108 (232)
T ss_dssp HHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGGCCGGGCSEEEECCSTHHHHTSBC
T ss_pred HHHHHHHHCCCEEEEEecCCCCCcccccccccchhhhhhhhHHHHHhhhcCCCCHHHcCcccCCEEEECCCcchHHHHhh
Confidence 3567889999998888543210 011111 2468999999996420 00
Q ss_pred ---------chHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHh-Cc
Q 023716 135 ---------YYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIIS-KD 175 (278)
Q Consensus 135 ---------~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~G-g~ 175 (278)
......++++.+.+++ +||.+||-|-++|+.++. |+
T Consensus 109 ~~~~~~~~~~~~~l~~~l~~~~~~g-----k~vaaIC~G~~~La~aL~~Gr 154 (232)
T 1vhq_A 109 FASLGSECTVDRELKALAQAMHQAG-----KPLGFMCIAPAMLPKIFDFPL 154 (232)
T ss_dssp HHHHGGGCCBCHHHHHHHHHHHHTT-----CCEEEETTGGGGHHHHCSSCC
T ss_pred hhccccccccCHHHHHHHHHHHHcC-----CEEEEECHHHHHHHHHhcCCC
Confidence 1234557888888888 999999999999998866 64
No 46
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=96.90 E-value=0.0039 Score=52.93 Aligned_cols=95 Identities=12% Similarity=0.021 Sum_probs=61.3
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHc-CCeEEEEeCCCC-----------hhhHHHhcccCCEEEEcC
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA-GARVIPLIYNEP-----------EDVLFEKLELVNGVLYTG 127 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~-Ga~~v~i~~~~~-----------~~~l~~~l~~iDGlIl~G 127 (278)
...|+|+..++-... .. ....+.++++ |.++..+..+.. ...+.+..+.+|.|++||
T Consensus 3 m~kV~ill~~g~~~~---------E~--~~~~~~l~~~~~~~v~~vs~~~~V~~~~G~~v~~d~~l~~~~~~~D~livpG 71 (206)
T 3f5d_A 3 LKKALFLILDQYADW---------EG--VYLASALNQREDWSVHTVSLDPIVSSIGGFKTSVDYIIGLEPANFNLLVMIG 71 (206)
T ss_dssp CEEEEEECCSSBCTT---------TS--HHHHHHHHTSTTEEEEEEESSSEEEBTTSCEEECSEETTSSCSCCSEEEECC
T ss_pred ccEEEEEEcCCCcHH---------HH--HHHHHHHhccCCeEEEEEECCCCEEecCCcEEecCcChhhCCcCCCEEEEcC
Confidence 357899887653221 11 2345667776 887777654321 001222224689999999
Q ss_pred CCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 128 GWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 128 G~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
|..... ......++++.+.+++ +||.+||-|..+|+.+
T Consensus 72 G~~~~~-~~~~l~~~l~~~~~~g-----k~iaaiC~G~~~La~a 109 (206)
T 3f5d_A 72 GDSWSN-DNKKLLHFVKTAFQKN-----IPIAAICGAVDFLAKN 109 (206)
T ss_dssp BSCCCC-CCHHHHHHHHHHHHTT-----CCEEEETHHHHHHHHT
T ss_pred CCChhh-cCHHHHHHHHHHHHcC-----CEEEEECHHHHHHHHc
Confidence 975332 3344557788887777 9999999999999875
No 47
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=96.82 E-value=0.01 Score=58.96 Aligned_cols=96 Identities=14% Similarity=0.119 Sum_probs=63.6
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCCh--h-hHHH-hcccCCEEEEcCCCCC-----
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE--D-VLFE-KLELVNGVLYTGGWAK----- 131 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~--~-~l~~-~l~~iDGlIl~GG~~~----- 131 (278)
..|||+...++ ....-....+++|+++|+.+.++-..... + .+.. ....+|+||||||..-
T Consensus 538 rKVaILvadG~----------fE~~El~~p~~aL~~aGa~V~vVsp~~g~GvD~t~~~~~s~~fDAVvlPGG~~~~~~~~ 607 (688)
T 3ej6_A 538 LRVGVLSTTKG----------GSLDKAKALKEQLEKDGLKVTVIAEYLASGVDQTYSAADATAFDAVVVAEGAERVFSGK 607 (688)
T ss_dssp CEEEEECCSSS----------SHHHHHHHHHHHHHHTTCEEEEEESSCCTTCCEETTTCCGGGCSEEEECTTCCTTTSTT
T ss_pred CEEEEEccCCC----------ccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcccCcccCChhcCcEEEECCCcccccccc
Confidence 36899876431 01111245678999999999999653210 0 1111 1235899999999652
Q ss_pred ---Cccc-hHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 132 ---DGLY-YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 132 ---~p~~-~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
+... ......+++.+.+.+ |||-+||-|-++|..+
T Consensus 608 ~~~d~Lr~~~~a~~fV~e~~~hg-----KpIAAIchgp~lL~~A 646 (688)
T 3ej6_A 608 GAMSPLFPAGRPSQILTDGYRWG-----KPVAAVGSAKKALQSI 646 (688)
T ss_dssp TTCCTTSCTTHHHHHHHHHHHTT-----CCEEEEGGGHHHHHHT
T ss_pred cchhhhccCHHHHHHHHHHHHcC-----CEEEEeCccHHHHHHc
Confidence 1111 134568889999999 9999999999999765
No 48
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=96.72 E-value=0.0023 Score=54.05 Aligned_cols=94 Identities=13% Similarity=0.136 Sum_probs=60.8
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCC---------------hhhHHHh-cccCCEEEE
Q 023716 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP---------------EDVLFEK-LELVNGVLY 125 (278)
Q Consensus 62 vIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~---------------~~~l~~~-l~~iDGlIl 125 (278)
.|+|+..++.. ...+ ...++.++++|.++..+..+.. ...+.+. ...+|.|++
T Consensus 4 kV~ill~~g~~---------~~e~--~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~liv 72 (205)
T 2ab0_A 4 SALVCLAPGSE---------ETEA--VTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVL 72 (205)
T ss_dssp EEEEEECTTCC---------HHHH--HHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEE
T ss_pred EEEEEEcCCCc---------HHHH--HHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEE
Confidence 58888765421 1121 3456789999999888755431 1123332 357899999
Q ss_pred cCCCC-CCc-cchHHHHHHHHHHHHhcCCCCCCcEEEEechH-HHHHHH
Q 023716 126 TGGWA-KDG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF-ELLTMI 171 (278)
Q Consensus 126 ~GG~~-~~p-~~~~~~~~li~~al~~~~~g~~~PVLGIClG~-QlL~~~ 171 (278)
|||.. ... .......++++.+.+++ +||.+||-|. ++|+.+
T Consensus 73 pGG~~~~~~l~~~~~l~~~l~~~~~~g-----k~i~aiC~G~~~lLa~a 116 (205)
T 2ab0_A 73 PGGIKGAECFRDSTLLVETVKQFHRSG-----RIVAAICAAPATVLVPH 116 (205)
T ss_dssp CCCHHHHHHHHHCHHHHHHHHHHHHTT-----CEEEEETHHHHHHTTTT
T ss_pred CCCcccHHHhccCHHHHHHHHHHHHcC-----CEEEEECHhHHHHHHHC
Confidence 99953 110 11123447777777777 9999999999 999864
No 49
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2
Probab=96.71 E-value=0.0024 Score=53.08 Aligned_cols=94 Identities=12% Similarity=0.036 Sum_probs=58.6
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHH-cCCeEEEEeCCCC------------hhhHHHh-cccCCEEEEcC
Q 023716 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVES-AGARVIPLIYNEP------------EDVLFEK-LELVNGVLYTG 127 (278)
Q Consensus 62 vIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~-~Ga~~v~i~~~~~------------~~~l~~~-l~~iDGlIl~G 127 (278)
.|+|+..++-.. ..+ ....+.+++ .|.++..+..+.. ...+.+. .+.+|.|++||
T Consensus 3 ~i~ill~~g~~~---------~e~--~~~~~~l~~a~~~~v~~vs~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~livpG 71 (188)
T 2fex_A 3 RIAIALAQDFAD---------WEP--ALLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPG 71 (188)
T ss_dssp EEEEECCTTBCT---------TSS--HHHHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECC
T ss_pred EEEEEeCCCchH---------HHH--HHHHHHHhhcCCceEEEEeCCCCceeeCCCcEEeccccHHHCCcccCCEEEECC
Confidence 588887664221 111 234567777 8998888765431 0111111 12689999999
Q ss_pred CCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 128 GWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 128 G~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
|............++++.+.+++ +||.+||-|.++|+.+
T Consensus 72 G~~~~~~~~~~l~~~l~~~~~~~-----k~i~aiC~G~~~La~a 110 (188)
T 2fex_A 72 GLSWEKGTAADLGGLVKRFRDRD-----RLVAGICAAASALGGT 110 (188)
T ss_dssp BSHHHHTCCCCCHHHHHHHHHTT-----CEEEEETHHHHHHHHT
T ss_pred CCcccccccHHHHHHHHHHHHCC-----CEEEEECHHHHHHHHC
Confidence 96411111112346777777777 9999999999999875
No 50
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=96.62 E-value=0.0052 Score=61.58 Aligned_cols=94 Identities=13% Similarity=0.061 Sum_probs=62.5
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCCh-----------h-hHHH-hcccCCEEEEcC
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE-----------D-VLFE-KLELVNGVLYTG 127 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~-----------~-~l~~-~l~~iDGlIl~G 127 (278)
..|||+...+.. ... ....++.|+++|+.+.++-..... + .+.+ ....+|+|||||
T Consensus 601 rKVaILlaDGfE---------e~E--l~~pvdaLr~AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPG 669 (753)
T 3ttv_A 601 RVVAILLNDEVR---------SAD--LLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPC 669 (753)
T ss_dssp CEEEEECCTTCC---------HHH--HHHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECC
T ss_pred CEEEEEecCCCC---------HHH--HHHHHHHHHHCCCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEEECC
Confidence 479999765421 111 345778999999999988654310 0 1111 112489999999
Q ss_pred CCCCCcc-chHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 128 GWAKDGL-YYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 128 G~~~~p~-~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
| ..+.. .......+++.+.+++ +||-+||-|-++|..+
T Consensus 670 G-g~~~Lr~d~~vl~~Vre~~~~g-----KpIAAIC~Gp~lLa~A 708 (753)
T 3ttv_A 670 G-NIADIADNGDANYYLMEAYKHL-----KPIALAGDARKFKATI 708 (753)
T ss_dssp S-CGGGTTTCHHHHHHHHHHHHTT-----CCEEEEGGGGGGGGGG
T ss_pred C-ChHHhhhCHHHHHHHHHHHhcC-----CeEEEECchHHHHHHc
Confidence 9 32211 1234568888888888 9999999999998764
No 51
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=96.58 E-value=0.0058 Score=50.77 Aligned_cols=95 Identities=15% Similarity=0.143 Sum_probs=60.1
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCC-Ch------------hhHHHh-cccCCEEEEc
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE-PE------------DVLFEK-LELVNGVLYT 126 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~-~~------------~~l~~~-l~~iDGlIl~ 126 (278)
..|+|+-.++-. ...+ ...++.++++|.++..+..+. .+ ..+.+. ...+|.|++|
T Consensus 6 kkv~ill~~g~~---------~~e~--~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livp 74 (190)
T 4e08_A 6 KSALVILAPGAE---------EMEF--IIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLP 74 (190)
T ss_dssp CEEEEEECTTCC---------HHHH--HHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEEC
T ss_pred cEEEEEECCCch---------HHHH--HHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEEC
Confidence 467777665321 1222 345688999999998886553 10 012221 2358999999
Q ss_pred CCCC-CC-ccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 127 GGWA-KD-GLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 127 GG~~-~~-p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
||.. .. -.......++++.+.+++ +||.+||-|.++|+.+
T Consensus 75 GG~~~~~~~~~~~~~~~~l~~~~~~~-----k~i~aiC~G~~~La~a 116 (190)
T 4e08_A 75 GGLGGSNAMGESSLVGDLLRSQESGG-----GLIAAICAAPTVLAKH 116 (190)
T ss_dssp CCHHHHHHHHHCHHHHHHHHHHHHTT-----CEEEEETTTHHHHHHT
T ss_pred CCChHHHHhhhCHHHHHHHHHHHHCC-----CEEEEECHHHHHHHHC
Confidence 9942 11 011123447777777777 9999999999999874
No 52
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=96.21 E-value=0.0045 Score=50.62 Aligned_cols=49 Identities=18% Similarity=0.329 Sum_probs=36.6
Q ss_pred ccCCEEEEcCC--C-CCCcc----chHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 118 ELVNGVLYTGG--W-AKDGL----YYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 118 ~~iDGlIl~GG--~-~~~p~----~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
..+|.|++||| . ..... ......++++.+.+++ +||.+||-|.++|+.+
T Consensus 65 ~~~D~livpGG~~~~~~~~l~~~~~~~~~~~~l~~~~~~g-----k~i~aiC~G~~~La~a 120 (175)
T 3cne_A 65 DEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEKG-----KMMIGHCAGAMMFDFT 120 (175)
T ss_dssp GGCSEEEEECCTTGGGGGGCTTCHHHHHHHHHHHHHHHTT-----CEEEEETTHHHHHHHT
T ss_pred ccCCEEEECCCcCcccHHHHhhcccCHHHHHHHHHHHHCC-----CEEEEECHHHHHHHHC
Confidence 57899999999 4 32111 2233457788887777 9999999999999875
No 53
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=96.20 E-value=0.012 Score=54.63 Aligned_cols=97 Identities=16% Similarity=0.164 Sum_probs=62.6
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCCh----------------------------
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE---------------------------- 110 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~---------------------------- 110 (278)
....|+|+..++.. ... ....++.|+++|+++..+..+..+
T Consensus 11 ~~~kv~ill~dg~e---------~~E--~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~ 79 (396)
T 3uk7_A 11 NSRTVLILCGDYME---------DYE--VMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLN 79 (396)
T ss_dssp CCCEEEEECCTTEE---------HHH--HHHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECC
T ss_pred cCCeEEEEeCCCcc---------HHH--HHHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeecc
Confidence 34679998765321 111 234568899999999888554211
Q ss_pred hhHHH-hcccCCEEEEcCCCCCCc-cchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 111 DVLFE-KLELVNGVLYTGGWAKDG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 111 ~~l~~-~l~~iDGlIl~GG~~~~p-~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
..+.+ ....+|.|++|||..... ........+++.+.+++ +||.+||-|.++|+.+
T Consensus 80 ~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~l~~~~~~~-----~~i~aiC~G~~~La~a 137 (396)
T 3uk7_A 80 ATFDEVDLSKYDGLVIPGGRAPEYLALTASVVELVKEFSRSG-----KPIASICHGQLILAAA 137 (396)
T ss_dssp SCGGGCCGGGCSEEEECCBSHHHHHTTCHHHHHHHHHHHHTT-----CCEEEETTTHHHHHHT
T ss_pred CChhhcCcccCCEEEECCCcchhhcccCHHHHHHHHHHHHcC-----CEEEEECchHHHHHhc
Confidence 01111 135689999999964110 11123457777777777 9999999999999876
No 54
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=96.18 E-value=0.012 Score=54.45 Aligned_cols=97 Identities=12% Similarity=0.124 Sum_probs=62.5
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCCh----------------------------
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE---------------------------- 110 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~---------------------------- 110 (278)
..+.|+|+..++.. ... ....++.|+++|+++..+..+...
T Consensus 204 ~~~ki~ill~dg~~---------~~e--~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~ 272 (396)
T 3uk7_A 204 ANKRILFLCGDYME---------DYE--VKVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALT 272 (396)
T ss_dssp CCCEEEEECCTTEE---------HHH--HHHHHHHHHHHTCEEEEECTTCCTTCEECEEEEECCSSSSCEEEECCCEECC
T ss_pred ccceEEEEecCCCc---------chh--HHHHHHHHHHCCCEEEEECCCCCCCcccccccccccccchhhhcCCceeecc
Confidence 34678998765321 111 234667889999999888543211
Q ss_pred hhHHHh-cccCCEEEEcCCCCCCc-cchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 111 DVLFEK-LELVNGVLYTGGWAKDG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 111 ~~l~~~-l~~iDGlIl~GG~~~~p-~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
..+.+. ...+|.|++|||..... .......++++.+.+++ +||.+||-|.++|+.+
T Consensus 273 ~~~~~~~~~~~D~livpGg~~~~~~~~~~~~~~~l~~~~~~~-----~~i~aiC~g~~~La~a 330 (396)
T 3uk7_A 273 TNFDDLVSSSYDALVIPGGRAPEYLALNEHVLNIVKEFMNSE-----KPVASICHGQQILAAA 330 (396)
T ss_dssp SCGGGCCGGGCSEEEECCBSHHHHHTTCHHHHHHHHHHHHTT-----CCEEEEGGGHHHHHHT
T ss_pred CCHHHCCcccCCEEEECCCcchhhhccCHHHHHHHHHHHHCC-----CEEEEEchHHHHHHHc
Confidence 012221 34689999999964110 11223457777777777 9999999999999875
No 55
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=96.15 E-value=0.013 Score=58.30 Aligned_cols=99 Identities=12% Similarity=0.035 Sum_probs=63.8
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCCh--h-hHHH-hcccCCEEEEcCCCCC---
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE--D-VLFE-KLELVNGVLYTGGWAK--- 131 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~--~-~l~~-~l~~iDGlIl~GG~~~--- 131 (278)
....|||+....++. ..--....++.|+++|+.++++-..... + .+.+ ....+|+||||||..-
T Consensus 528 ~g~kVaIL~a~~dGf---------e~~E~~~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~~g~~~ 598 (688)
T 2iuf_A 528 DGLKVGLLASVNKPA---------SIAQGAKLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVADGAEGLFG 598 (688)
T ss_dssp TTCEEEEECCTTCHH---------HHHHHHHHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTCGGGCC
T ss_pred CCCEEEEEecCCCCC---------cHHHHHHHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecCCCccccc
Confidence 345799987632211 1111345778999999999998654311 0 1111 1246899999999421
Q ss_pred -------------Cccc--hHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 132 -------------DGLY--YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 132 -------------~p~~--~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
...+ ......+++.+.+.+ |||-+||-|-++|..+
T Consensus 599 ~~~~~~~~~~~~~~~~L~~~~~~~~~v~~~~~~g-----KpIaAIc~ap~vL~~a 648 (688)
T 2iuf_A 599 ADSFTVEPSAGSGASTLYPAGRPLNILLDAFRFG-----KTVGALGSGSDALESG 648 (688)
T ss_dssp TTTTTCCCCTTSCCCSSSCTTHHHHHHHHHHHHT-----CEEEEEGGGHHHHHHT
T ss_pred ccccccccccccchhhcccChHHHHHHHHHHHcC-----CEEEEECchHHHHHHc
Confidence 1111 123458888899899 9999999999988754
No 56
>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}
Probab=96.15 E-value=0.012 Score=49.80 Aligned_cols=50 Identities=8% Similarity=-0.057 Sum_probs=37.1
Q ss_pred cccCCEEEEcCCCCCCc---cchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 117 LELVNGVLYTGGWAKDG---LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 117 l~~iDGlIl~GG~~~~p---~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
++.+|.||+|||..... .......++++.+.+++ ++|.+||-|..+|+.+
T Consensus 72 ~~~~D~livpGg~~~~~~~~~~~~~l~~~l~~~~~~g-----~~iaaIC~G~~~La~a 124 (209)
T 3er6_A 72 FDFTNILIIGSIGDPLESLDKIDPALFDWIRELHLKG-----SKIVAIDTGIFVVAKA 124 (209)
T ss_dssp CSCCSEEEECCCSCHHHHGGGSCHHHHHHHHHHHHTT-----CEEEEETTHHHHHHHH
T ss_pred cCCCCEEEECCCCCchhhhccCCHHHHHHHHHHHhcC-----CEEEEEcHHHHHHHHc
Confidence 45789999999975211 11234457777777777 9999999999999876
No 57
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=96.09 E-value=0.011 Score=51.46 Aligned_cols=79 Identities=9% Similarity=0.203 Sum_probs=53.3
Q ss_pred HHHHHHHHcCCeEEEEeCCCC----------------hh-h-------------HHHh-cccCCEEEEcCCCCC-----C
Q 023716 89 SYVKFVESAGARVIPLIYNEP----------------ED-V-------------LFEK-LELVNGVLYTGGWAK-----D 132 (278)
Q Consensus 89 syv~~le~~Ga~~v~i~~~~~----------------~~-~-------------l~~~-l~~iDGlIl~GG~~~-----~ 132 (278)
..++.|+++|+++..+..+.. .. . +.+. .+.+|+|++|||... +
T Consensus 46 ~p~~vL~~aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~~~~~~~~~l~dv~~~~~D~livPGG~~~~~~L~~ 125 (242)
T 3l3b_A 46 LVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDIEQIRVEEFDMLVIPGGYGVAKNFSN 125 (242)
T ss_dssp HHHHHHHHTTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTTCEEEGGGCCGGGCSEEEECCCHHHHHHHBS
T ss_pred HHHHHHHHCCCEEEEEecCCCcccccccccCccccccCCeEEecchhccccCCChHHCCcccCCEEEEcCCcchhhhhhh
Confidence 356788999999988754421 00 0 1111 245899999999641 0
Q ss_pred --------ccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHH
Q 023716 133 --------GLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMII 172 (278)
Q Consensus 133 --------p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~ 172 (278)
-.......++++.+.+++ +||.+||-|..+|+.+-
T Consensus 126 ~~~~~~~~~~~~~~l~~~lr~~~~~g-----k~IaaIC~G~~~La~ag 168 (242)
T 3l3b_A 126 LFDEDKENDYILPEFKNAVREFYNAK-----KPIGAVCISPAVVVALL 168 (242)
T ss_dssp TTSCC--CCCBCHHHHHHHHHHHHTT-----CCEEEETTHHHHHHHHH
T ss_pred hhccccccccCCHHHHHHHHHHHHcC-----CEEEEECHHHHHHHHhC
Confidence 011234557888888888 99999999999998764
No 58
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}
Probab=95.81 E-value=0.024 Score=49.66 Aligned_cols=95 Identities=12% Similarity=0.013 Sum_probs=57.6
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHH-HHcCCeEEEEeCCCC------------hhhHHHhcccCCEEEEcC
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFV-ESAGARVIPLIYNEP------------EDVLFEKLELVNGVLYTG 127 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~l-e~~Ga~~v~i~~~~~------------~~~l~~~l~~iDGlIl~G 127 (278)
..|+|+..++-. ..++ ...++.+ +..|.++.++..+.. ...+.+.-..+|.|++||
T Consensus 24 ~~I~ill~~gf~---------~~e~--~~p~dvl~~~~~~~v~~vs~~~~~V~~~~G~~i~~d~~l~~~~~~yD~liVPG 92 (253)
T 3ewn_A 24 EQIAMLVYPGMT---------VMDL--VGPHCMFGSLMGAKIYIVAKSLDPVTSDAGLAIVPTATFGTCPRDLTVLFAPG 92 (253)
T ss_dssp CEEEEECCTTBC---------HHHH--HHHHHHHTTSTTCEEEEEESSSSCEECTTSCEECCSEETTTSCSSCSEEEECC
T ss_pred eEEEEEeCCCCc---------HHHH--HHHHHHHHhCCCCEEEEEeCCCCeEEcCCCCEEeCCcCHHHcCCCCCEEEECC
Confidence 479999876421 1122 2355667 567888877754421 001122223459999999
Q ss_pred CC-CCCc-cchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 128 GW-AKDG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 128 G~-~~~p-~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
|. .... .......++++.+.+++ ++|.+||-|..+|+.+
T Consensus 93 G~~g~~~l~~~~~l~~~Lr~~~~~g-----k~IaaICtG~~lLa~A 133 (253)
T 3ewn_A 93 GTDGTLAAASDAETLAFMADRGARA-----KYITSVCSGSLILGAA 133 (253)
T ss_dssp BSHHHHHHTTCHHHHHHHHHHHTTC-----SEEEEETTHHHHHHHT
T ss_pred CccchhhhccCHHHHHHHHHHHHcC-----CEEEEEChHHHHHHHc
Confidence 97 3110 11123346666666666 9999999999998875
No 59
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=95.70 E-value=0.015 Score=49.11 Aligned_cols=95 Identities=13% Similarity=0.058 Sum_probs=60.8
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCC-Ch------------hhHHHh-cccCCEEEEc
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE-PE------------DVLFEK-LELVNGVLYT 126 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~-~~------------~~l~~~-l~~iDGlIl~ 126 (278)
+.|+|+..++-. ... ....++.++++|.++.++..+. .+ ..+.+. ...+|.|++|
T Consensus 10 ~~v~ill~~g~~---------~~e--~~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livp 78 (208)
T 3ot1_A 10 KRILVPVAHGSE---------EME--TVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALP 78 (208)
T ss_dssp CEEEEEECTTCC---------HHH--HHHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEEC
T ss_pred CeEEEEECCCCc---------HHH--HHHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEEC
Confidence 478998776421 112 2345688899999988886652 10 012221 2468999999
Q ss_pred CCCC-CC-ccchHHHHHHHHHHHHhcCCCCCCcEEEEechH-HHHHHH
Q 023716 127 GGWA-KD-GLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF-ELLTMI 171 (278)
Q Consensus 127 GG~~-~~-p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~-QlL~~~ 171 (278)
||.. .. -.......++++.+.+++ +||.+||-|. .+|+.+
T Consensus 79 GG~~~~~~l~~~~~l~~~l~~~~~~g-----k~i~aiC~G~a~~La~a 121 (208)
T 3ot1_A 79 GGVGGAQAFADSTALLALIDAFSQQG-----KLVAAICATPALVFAKQ 121 (208)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHHHTT-----CEEEEETTHHHHTTTTT
T ss_pred CCchHHHHHhhCHHHHHHHHHHHHcC-----CEEEEEChhHHHHHHHC
Confidence 9962 11 011223457777777777 9999999998 788764
No 60
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}
Probab=95.61 E-value=0.015 Score=48.96 Aligned_cols=49 Identities=14% Similarity=0.166 Sum_probs=38.3
Q ss_pred cccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 117 LELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 117 l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
...+|.||+|||....... ....++++.+.+++ ++|.+||-|..+|+.+
T Consensus 69 ~~~~D~livpGG~~~~~~~-~~l~~~l~~~~~~g-----~~iaaIC~G~~~La~a 117 (202)
T 3gra_A 69 LKELDLLVVCGGLRTPLKY-PELDRLLNDCAAHG-----MALGGLWNGAWFLGRA 117 (202)
T ss_dssp GTTCSEEEEECCTTCCSCC-TTHHHHHHHHHHHT-----CEEEEETTHHHHHHHH
T ss_pred CCCCCEEEEeCCCchhhcc-HHHHHHHHHHHhhC-----CEEEEECHHHHHHHHc
Confidence 4578999999997632222 44557788888888 9999999999999875
No 61
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=95.39 E-value=0.033 Score=51.49 Aligned_cols=95 Identities=18% Similarity=0.141 Sum_probs=60.9
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCCh---------h-----hHHHh-cccCCEEEE
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE---------D-----VLFEK-LELVNGVLY 125 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~---------~-----~l~~~-l~~iDGlIl 125 (278)
..|+|+..++-. ... ....++.|+.+|.++.++..+..+ . .+.+. ...+|.|++
T Consensus 11 kkV~ILl~dgf~---------~~E--l~~p~dvL~~Ag~~v~vvS~~~g~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiV 79 (365)
T 3fse_A 11 KKVAILIEQAVE---------DTE--FIIPCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIASEFDAVVI 79 (365)
T ss_dssp CEEEEECCTTBC---------HHH--HHHHHHHHHHTTCEEEEEESSSSCCEECTTSCCEECCSEETTTCCGGGCSEEEE
T ss_pred eEEEEEECCCCc---------HHH--HHHHHHHHHHCCCEEEEEECCCCceeecCCCceEEeCCCCHhhCCCcCCCEEEE
Confidence 468998876421 112 234668889999988887544321 0 01111 125899999
Q ss_pred cCCCCCCc-cchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 126 TGGWAKDG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 126 ~GG~~~~p-~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
|||..... .......++++.+.+++ +||.+||-|..+|+.+
T Consensus 80 PGG~g~~~l~~~~~l~~~Lr~~~~~g-----k~IaAIC~G~~lLA~A 121 (365)
T 3fse_A 80 PGGMAPDKMRRNPNTVRFVQEAMEQG-----KLVAAVCHGPQVLIEG 121 (365)
T ss_dssp CCBTHHHHHTTCHHHHHHHHHHHHTT-----CEEEEETTTHHHHHHT
T ss_pred ECCcchhhccCCHHHHHHHHHHHHCC-----CEEEEECHHHHHHHHc
Confidence 99974210 11223457777777777 9999999999999875
No 62
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=95.38 E-value=0.044 Score=54.96 Aligned_cols=99 Identities=12% Similarity=0.067 Sum_probs=63.0
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCC------------hhhHHHh-cccCCEEEE
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP------------EDVLFEK-LELVNGVLY 125 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~------------~~~l~~~-l~~iDGlIl 125 (278)
....|+|+..++.. ... ....++.|+.+|+++.++-.+.. ...+.+. ...+|+||+
T Consensus 533 ~~rkVaILl~dGfe---------~~E--l~~p~dvL~~AG~~V~ivS~~gg~V~ss~G~~v~~d~~l~~v~~~~yDaViV 601 (715)
T 1sy7_A 533 KSRRVAIIIADGYD---------NVA--YDAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFI 601 (715)
T ss_dssp TTCEEEEECCTTBC---------HHH--HHHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEE
T ss_pred CCCEEEEEEcCCCC---------HHH--HHHHHHHHHhcCCEEEEEECCCCceecCCCceEecccccccCCcccCCEEEE
Confidence 34579998875321 111 23466889999999988865421 0011111 235799999
Q ss_pred cCCC-CCCc-cchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHHHh
Q 023716 126 TGGW-AKDG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIIS 173 (278)
Q Consensus 126 ~GG~-~~~p-~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~~G 173 (278)
|||. .... ........+++.+.+++ +||.+||-|..+|+.++|
T Consensus 602 PGG~~~~~~l~~~~~l~~~Lr~~~~~g-----K~IaAIC~G~~lLA~AlG 646 (715)
T 1sy7_A 602 PGGAKAAETLSKNGRALHWIREAFGHL-----KAIGATGEAVDLVAKAIA 646 (715)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHHHTT-----CEEEEETTHHHHHHHHHC
T ss_pred cCCcccHhhhccCHHHHHHHHHHHhCC-----CEEEEECHHHHHHHHccC
Confidence 9994 2110 11123457778788888 999999999999998743
No 63
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=94.89 E-value=0.031 Score=50.07 Aligned_cols=97 Identities=15% Similarity=0.195 Sum_probs=60.3
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCC-eEEEEeCCC----ChhhHHHhcccCCEEEEcCCCCC--C
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGA-RVIPLIYNE----PEDVLFEKLELVNGVLYTGGWAK--D 132 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga-~~v~i~~~~----~~~~l~~~l~~iDGlIl~GG~~~--~ 132 (278)
+|.|.++..... ....|. ..|.+++++.|+ .+..+.... +.+++.+.++.+|+|+++||... -
T Consensus 56 ~~~I~~IptAs~---------~~~~~~-~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~~ad~I~v~GGnt~~l~ 125 (291)
T 3en0_A 56 DAIIGIIPSASR---------EPLLIG-ERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVEQCTGIFMTGGDQLRLC 125 (291)
T ss_dssp GCEEEEECTTCS---------SHHHHH-HHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHHHCSEEEECCSCHHHHH
T ss_pred CCeEEEEeCCCC---------ChHHHH-HHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHHhcCCEEEECCCCHHHHH
Confidence 477888764321 124453 568889999999 565665532 22345567889999999999651 0
Q ss_pred ccchH-HHHHHHHHHHHhcCCCCCCcEEEEechHHHHHH
Q 023716 133 GLYYA-IVEKVFKKILEKNDAGDHFPLYAHCLGFELLTM 170 (278)
Q Consensus 133 p~~~~-~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~ 170 (278)
..+.+ ...+.++.+++++ ..|+.|+|-|.-++..
T Consensus 126 ~~l~~t~l~~~L~~~~~~G----~~~~~GtSAGA~i~~~ 160 (291)
T 3en0_A 126 GLLADTPLMDRIRQRVHNG----EISLAGTSAGAAVMGH 160 (291)
T ss_dssp HHHTTCHHHHHHHHHHHTT----SSEEEEETHHHHTTSS
T ss_pred HHHHhCCHHHHHHHHHHCC----CeEEEEeCHHHHhhhH
Confidence 01111 1234555555433 1799999999988754
No 64
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=94.83 E-value=0.014 Score=49.66 Aligned_cols=78 Identities=18% Similarity=0.133 Sum_probs=52.5
Q ss_pred HHHHHHHHcCCeEEEEeCCCCh---h----------------hH------HHh-cccCCEEEEcCCCCC--CccchHHHH
Q 023716 89 SYVKFVESAGARVIPLIYNEPE---D----------------VL------FEK-LELVNGVLYTGGWAK--DGLYYAIVE 140 (278)
Q Consensus 89 syv~~le~~Ga~~v~i~~~~~~---~----------------~l------~~~-l~~iDGlIl~GG~~~--~p~~~~~~~ 140 (278)
..++.++++|.++.++..+... + .+ .+. ...+|+|++|||... +-.......
T Consensus 33 ~p~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~D~livpGG~~~~~~l~~~~~l~ 112 (224)
T 1u9c_A 33 VPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQ 112 (224)
T ss_dssp HHHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECCGGGGSSCSEEEECCCTTHHHHSTTCHHHH
T ss_pred HHHHHHHHCCCeEEEECCCCCccccCccccccHHHHHhhhhHhhcCCCChHHcChhhCCEEEECCCcchHHHhhcCHHHH
Confidence 3567888999999888544211 0 01 111 236899999999752 111223455
Q ss_pred HHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 141 KVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 141 ~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
++++.+.+++ +||.+||-|-++|+.+
T Consensus 113 ~~l~~~~~~~-----k~iaaiC~G~~~La~a 138 (224)
T 1u9c_A 113 YVLQQFAEDG-----RIIAAVCHGPSGLVNA 138 (224)
T ss_dssp HHHHHHHHTT-----CEEEEETTGGGGGTTC
T ss_pred HHHHHHHHCC-----CEEEEEChHHHHHHHc
Confidence 7888888888 9999999999988764
No 65
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=94.12 E-value=0.019 Score=49.74 Aligned_cols=49 Identities=12% Similarity=0.089 Sum_probs=36.4
Q ss_pred ccCCEEEEcCCCCC--CccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 118 ELVNGVLYTGGWAK--DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 118 ~~iDGlIl~GG~~~--~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
+.+|+|++|||... +-.......++++.+.+++ +||.+||-|-.+|+.+
T Consensus 97 ~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~g-----k~vaaIC~G~~~La~a 147 (243)
T 1rw7_A 97 DDYQIFFASAGHGTLFDYPKAKDLQDIASEIYANG-----GVVAAVCHGPAIFDGL 147 (243)
T ss_dssp GGEEEEEECCSTTHHHHGGGCHHHHHHHHHHHHTT-----CEEEEETTGGGGGTTC
T ss_pred hhCcEEEECCCCCchhhcccCHHHHHHHHHHHHcC-----CEEEEECCCHHHHHhc
Confidence 35799999999751 1111234557888888888 9999999999988764
No 66
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=93.95 E-value=0.029 Score=48.95 Aligned_cols=49 Identities=18% Similarity=0.161 Sum_probs=36.6
Q ss_pred ccCCEEEEcCCCCC--CccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 118 ELVNGVLYTGGWAK--DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 118 ~~iDGlIl~GG~~~--~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
+.+|+|++|||... +-.......++++.+.+++ +||-+||-|-.+|+.+
T Consensus 104 ~~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~~g-----k~iaaIC~Gp~~La~a 154 (247)
T 3n7t_A 104 HDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRG-----GVIGAVCHGPAMLPGI 154 (247)
T ss_dssp GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTT-----CEEEEETTGGGGGGGC
T ss_pred hhCCEEEEeCCCchhhhcccCHHHHHHHHHHHHcC-----CEEEEEChHHHHHHHh
Confidence 35899999999752 1112234457888888888 9999999999998664
No 67
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=93.85 E-value=0.031 Score=48.70 Aligned_cols=49 Identities=16% Similarity=0.093 Sum_probs=36.9
Q ss_pred ccCCEEEEcCCCCC--CccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 118 ELVNGVLYTGGWAK--DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 118 ~~iDGlIl~GG~~~--~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
+.+|+|++|||... +-.......++++.+.+++ +||-+||-|-.+|+.+
T Consensus 97 ~~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~~g-----k~iaaIC~G~~~La~a 147 (244)
T 3kkl_A 97 SDYKVFFASAGHGALFDYPKAKNLQDIASKIYANG-----GVIAAICHGPLLFDGL 147 (244)
T ss_dssp GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTT-----CEEEEETTGGGGGTTC
T ss_pred hhCCEEEEcCCCchhhhcccCHHHHHHHHHHHHcC-----CEEEEECHHHHHHHHh
Confidence 35899999999752 1112234457888888888 9999999999998765
No 68
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Probab=93.22 E-value=0.071 Score=45.81 Aligned_cols=94 Identities=10% Similarity=0.032 Sum_probs=56.7
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHH-cCCeEEEEeCCCC-----------hh-hHHHhcccCCEEEEcC
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVES-AGARVIPLIYNEP-----------ED-VLFEKLELVNGVLYTG 127 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~-~Ga~~v~i~~~~~-----------~~-~l~~~l~~iDGlIl~G 127 (278)
..|+|+..++-.. .++ ...++.++. .|.++..+..+.. .+ .+. ....+|.|++||
T Consensus 6 ~~V~ill~~gf~~---------~e~--~~p~evl~~~~~~~v~~vs~~~~~V~~~~G~~v~~d~~l~-~~~~~D~livpG 73 (231)
T 3noq_A 6 VQIGFLLFPEVQQ---------LDL--TGPHDVLASLPDVQVHLIWKEPGPVVASSGLVLQATTSFA-DCPPLDVICIPG 73 (231)
T ss_dssp EEEEEECCTTCCH---------HHH--HHHHHHHTTSTTEEEEEEESSSEEEECTTSCEEEECEETT-TCCCCSEEEECC
T ss_pred EEEEEEEeCCCcH---------HHH--HHHHHHHHcCCCCEEEEEECCCCcEEcCCCCEEecccChh-HCCcCCEEEECC
Confidence 4689988764211 111 234567766 6777666643321 00 111 134689999999
Q ss_pred CCCCCc-cchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 128 GWAKDG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 128 G~~~~p-~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
|..... .......++++.+.+++ ++|.+||-|-.+|+.+
T Consensus 74 G~g~~~~~~~~~l~~~lr~~~~~g-----~~v~aiC~G~~~La~a 113 (231)
T 3noq_A 74 GTGVGALMEDPQALAFIRQQAARA-----RYVTSVSTGSLVLGAA 113 (231)
T ss_dssp STTHHHHTTCHHHHHHHHHHHTTC-----SEEEEETTHHHHHHHT
T ss_pred CCChhhhccCHHHHHHHHHHHhcC-----CEEEEECHHHHHHHHc
Confidence 965211 11123346666666666 9999999999998875
No 69
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=93.11 E-value=0.047 Score=48.72 Aligned_cols=50 Identities=10% Similarity=0.072 Sum_probs=37.2
Q ss_pred cccCCEEEEcCCCCC--CccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 117 LELVNGVLYTGGWAK--DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 117 l~~iDGlIl~GG~~~--~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
.+.+|+|++|||... +-.......++++++.+++ ++|.+||-|-.+|..+
T Consensus 143 ~~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~~~g-----k~VaaIC~Gp~~La~a 194 (291)
T 1n57_A 143 DSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKND-----RFVISLCHGPAAFLAL 194 (291)
T ss_dssp TCSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTT-----CEEEEETTGGGGGGGG
T ss_pred cccCCEEEecCCcchhhhhhhCHHHHHHHHHHHHcC-----CEEEEECccHHHHHhh
Confidence 467899999999642 1122234568888888888 9999999999876554
No 70
>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}
Probab=93.02 E-value=0.046 Score=46.30 Aligned_cols=95 Identities=8% Similarity=0.047 Sum_probs=56.5
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHc--CCeEEEEeCCCC-----------hhhHHHhcccCCEEEEcC
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA--GARVIPLIYNEP-----------EDVLFEKLELVNGVLYTG 127 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~--Ga~~v~i~~~~~-----------~~~l~~~l~~iDGlIl~G 127 (278)
..|+|+..++-.. .+ ....++.++.+ |.++..+..+.. .+...+.....|.|++||
T Consensus 5 ~~V~ill~~g~~~---------~e--~~~~~~~l~~a~~~~~v~~vs~~~~~V~~~~G~~v~~d~~~~~~~~~D~livpG 73 (211)
T 3mgk_A 5 YRIDVLLFNKFET---------LD--VFGPVEIFGNLQDDFELNFISSDGGLVESSQKVRVETSLYTRDENIEKILFVPG 73 (211)
T ss_dssp EEEEEECCTTCCH---------HH--HHHHHHHHTTCTTTEEEEEECSSCEEEECTTCCEEEEBCCCCCSSSEEEEEECC
T ss_pred eEEEEEEeCCcch---------hH--HHHHHHHHHhCCCceEEEEEECCCCeEecCCCcEEEeccchhhCCCCCEEEECC
Confidence 3688888764211 11 13456777776 356655533220 000001123479999999
Q ss_pred CCCCCc-cchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 128 GWAKDG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 128 G~~~~p-~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
|..... .......++++.+.+++ ++|.+||-|-.+|+.+
T Consensus 74 G~~~~~~~~~~~~~~~l~~~~~~~-----k~iaaiC~G~~~La~a 113 (211)
T 3mgk_A 74 GSGTREKVNDDNFINFIGNMVKES-----KYIISVCTGSALLSKA 113 (211)
T ss_dssp STHHHHHTTCHHHHHHHHHHHHHC-----SEEEECTTHHHHHHHT
T ss_pred CcchhhhcCCHHHHHHHHHHHHcC-----CEEEEEchHHHHHHhc
Confidence 964211 11223457778888888 9999999999999875
No 71
>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A
Probab=90.24 E-value=0.3 Score=40.54 Aligned_cols=75 Identities=13% Similarity=0.056 Sum_probs=40.4
Q ss_pred HHHHHHHHcCCeEEEEeCCCCh------------------hh---HHHhcccCCEEEEcCCCCCCccch---HHHHHHHH
Q 023716 89 SYVKFVESAGARVIPLIYNEPE------------------DV---LFEKLELVNGVLYTGGWAKDGLYY---AIVEKVFK 144 (278)
Q Consensus 89 syv~~le~~Ga~~v~i~~~~~~------------------~~---l~~~l~~iDGlIl~GG~~~~p~~~---~~~~~li~ 144 (278)
.-++.|+++|..+..+...... ++ .....+.+|.|++|||..- +... ....++++
T Consensus 22 ~p~~vl~~ag~~v~~~s~~~~~~~~v~~~~g~~v~~d~~~~~~~~~d~~~~~yD~lvvPGG~~~-~~~l~~~~~l~~~l~ 100 (194)
T 4gdh_A 22 APWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGGGLG-AKTLSTTPFVQQVVK 100 (194)
T ss_dssp HHHHHHHHTTCCEEEEEESSCTTCEEECTTSCEEECSEEGGGSCCHHHHHHHCSEEEECCCHHH-HHHHHTCHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEEEEcCCCCceEecCCCceeeccccHhhCCccccccccCCEEEECCCchh-HhHhhhCHHHHHHHH
Confidence 3457789999877655332110 00 1112345799999999430 1111 11223444
Q ss_pred HHHHhcCCCCCCcEEEEechHHHH
Q 023716 145 KILEKNDAGDHFPLYAHCLGFELL 168 (278)
Q Consensus 145 ~al~~~~~g~~~PVLGIClG~QlL 168 (278)
...++ ..+++-.||-|..++
T Consensus 101 ~~~~~----~~k~iaaiC~g~~l~ 120 (194)
T 4gdh_A 101 EFYKK----PNKWIGMICAGTLTA 120 (194)
T ss_dssp HHTTC----TTCEEEEEGGGGHHH
T ss_pred Hhhhc----CCceEEeecccccch
Confidence 33322 228999999998443
No 72
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=88.01 E-value=2 Score=37.96 Aligned_cols=86 Identities=6% Similarity=-0.045 Sum_probs=54.3
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhcc---cCCEEEEcCCCCC
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKLE---LVNGVLYTGGWAK 131 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l~---~iDGlIl~GG~~~ 131 (278)
.++.||++..-.. +......+.....+.+++.|..+++...+.+.+. +..++. ++||||+.+...
T Consensus 2 ~~~~Ig~i~p~~~-------~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~- 73 (350)
T 3h75_A 2 SLTSVVFLNPGNS-------TETFWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQY- 73 (350)
T ss_dssp -CCEEEEEECSCT-------TCHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSS-
T ss_pred CCCEEEEECCCCC-------CChHHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchh-
Confidence 4678999875421 1112444556677788889999988866554432 344444 899999986211
Q ss_pred CccchHHHHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 132 DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 132 ~p~~~~~~~~li~~al~~~~~g~~~PVLGICl 163 (278)
....+++++.+.+ +||.-+..
T Consensus 74 ------~~~~~~~~~~~~g-----iPvV~~~~ 94 (350)
T 3h75_A 74 ------VAPQILRLSQGSG-----IKLFIVNS 94 (350)
T ss_dssp ------HHHHHHHHHTTSC-----CEEEEEES
T ss_pred ------hHHHHHHHHHhCC-----CcEEEEcC
Confidence 2235666666667 89887764
No 73
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=85.09 E-value=0.41 Score=38.96 Aligned_cols=69 Identities=10% Similarity=0.127 Sum_probs=37.2
Q ss_pred CCCCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEE---EEeCCCChhhHH----Hhcc-cCCEEEEcC
Q 023716 56 KLNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVI---PLIYNEPEDVLF----EKLE-LVNGVLYTG 127 (278)
Q Consensus 56 ~~~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v---~i~~~~~~~~l~----~~l~-~iDGlIl~G 127 (278)
-.|.+|.++|++--..-..|...+ .+. .....++++.|+.++ +++ | + +.+. +.++ .+|-||.+|
T Consensus 3 ~~~~~~rv~ii~tGdEl~~G~i~D-sn~----~~l~~~l~~~G~~v~~~~iv~-D-d-~~i~~al~~a~~~~~DlVittG 74 (164)
T 3pzy_A 3 GSMTTRSARVIIASTRASSGEYED-RCG----PIITEWLAQQGFSSAQPEVVA-D-G-SPVGEALRKAIDDDVDVILTSG 74 (164)
T ss_dssp ----CCEEEEEEECHHHHC----C-CHH----HHHHHHHHHTTCEECCCEEEC-S-S-HHHHHHHHHHHHTTCSEEEEES
T ss_pred CCCCCCEEEEEEECCCCCCCceee-HHH----HHHHHHHHHCCCEEEEEEEeC-C-H-HHHHHHHHHHHhCCCCEEEECC
Confidence 347789999987642111222211 112 234468889999875 333 3 2 4443 3343 789999999
Q ss_pred CCCCC
Q 023716 128 GWAKD 132 (278)
Q Consensus 128 G~~~~ 132 (278)
|-...
T Consensus 75 G~s~g 79 (164)
T 3pzy_A 75 GTGIA 79 (164)
T ss_dssp CCSSS
T ss_pred CCCCC
Confidence 98753
No 74
>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}
Probab=85.07 E-value=0.52 Score=40.57 Aligned_cols=94 Identities=17% Similarity=0.108 Sum_probs=51.3
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcC--CeEEEEeCCC------------ChhhHHHhcccCCEEEE
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAG--ARVIPLIYNE------------PEDVLFEKLELVNGVLY 125 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~G--a~~v~i~~~~------------~~~~l~~~l~~iDGlIl 125 (278)
...|+|+..++-. ...+ ...++.++.+| .++..+. +. ....+.+ ...+|.|++
T Consensus 20 ~~kV~ill~dGf~---------~~e~--~~p~dvl~~~~~~~~v~~vs-~~~~V~ss~G~~v~~d~~l~~-~~~~D~liV 86 (236)
T 3bhn_A 20 MYKVGIVLFDDFT---------DVDF--FLMNDLLGRTSDSWTVRILG-TKPEHHSQLGMTVKTDGHVSE-VKEQDVVLI 86 (236)
T ss_dssp CEEEEEECCTTBC---------HHHH--HHHHHHHTTCSSSEEEEEEE-SSSEEEBTTCCEEECSEEGGG-GGGCSEEEE
T ss_pred CCEEEEEeCCCCh---------HHHH--HHHHHHHHcCCCCEEEEEEE-CCCcEEecCCcEEecCccccc-ccCCCEEEE
Confidence 3469998876421 1111 23456666655 4565554 21 0111222 467899999
Q ss_pred cCC-CCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHHHH
Q 023716 126 TGG-WAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (278)
Q Consensus 126 ~GG-~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~~~ 171 (278)
||| ... ........++++. ..+. ..++|.+||-|-.+|+.+
T Consensus 87 PGG~~g~--~~l~~~~~l~~~L--~~~~-~~~~IaaIC~G~~lLa~A 128 (236)
T 3bhn_A 87 TSGYRGI--PAALQDENFMSAL--KLDP-SRQLIGSICAGSFVLHEL 128 (236)
T ss_dssp CCCTTHH--HHHHTCHHHHHHC--CCCT-TTCEEEEETTHHHHHHHT
T ss_pred cCCccCH--hhhccCHHHHHHH--HhCC-CCCEEEEEcHHHHHHHHc
Confidence 999 331 1111112444444 2211 223999999999999875
No 75
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=83.02 E-value=10 Score=31.91 Aligned_cols=88 Identities=11% Similarity=0.068 Sum_probs=52.0
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHH----hc-ccCCEEEEcCCCCCCcc
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFE----KL-ELVNGVLYTGGWAKDGL 134 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~----~l-~~iDGlIl~GG~~~~p~ 134 (278)
+..||++..... + ....-+.....+.+++.|..+++.....+.+...+ +. ..+||||+.+.....+.
T Consensus 15 ~~~Igvi~~~~~-------~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~ 86 (298)
T 3tb6_A 15 NKTIGVLTTYIS-------D-YIFPSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQT 86 (298)
T ss_dssp CCEEEEEESCSS-------S-TTHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCC
T ss_pred CceEEEEeCCCC-------c-hHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccccccC
Confidence 368999875422 1 12344556677888889999988876554432222 22 47999999876431111
Q ss_pred chHHHHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 135 YYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 135 ~~~~~~~li~~al~~~~~g~~~PVLGICl 163 (278)
.....++.+.+.+ +|+.-+.+
T Consensus 87 ---~~~~~~~~~~~~~-----iPvV~~~~ 107 (298)
T 3tb6_A 87 ---PNIGYYLNLEKNG-----IPFAMINA 107 (298)
T ss_dssp ---TTHHHHHHHHHTT-----CCEEEESS
T ss_pred ---CcHHHHHHHHhcC-----CCEEEEec
Confidence 1123455555566 77776653
No 76
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=82.89 E-value=9.9 Score=32.61 Aligned_cols=84 Identities=18% Similarity=0.090 Sum_probs=50.5
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCCCCCCcc
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGWAKDGL 134 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~~~~p~ 134 (278)
+.+|||+..... +. ...-+.....+.+++.|..+++.....+.+. +..++ .++||||+.+.....
T Consensus 2 ~~~Igvi~~~~~-------~~-~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~-- 71 (313)
T 3m9w_A 2 EVKIGMAIDDLR-------LE-RWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQV-- 71 (313)
T ss_dssp -CEEEEEESCCS-------SS-TTHHHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTS--
T ss_pred CcEEEEEeCCCC-------Ch-HHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhh--
Confidence 468999875322 11 2334556677888899999988876554432 22222 479999998764311
Q ss_pred chHHHHHHHHHHHHhcCCCCCCcEEEEe
Q 023716 135 YYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (278)
Q Consensus 135 ~~~~~~~li~~al~~~~~g~~~PVLGIC 162 (278)
....++.+.+.+ +|+.-+-
T Consensus 72 ----~~~~~~~~~~~~-----iPvV~~~ 90 (313)
T 3m9w_A 72 ----LSNVVKEAKQEG-----IKVLAYD 90 (313)
T ss_dssp ----CHHHHHHHHTTT-----CEEEEES
T ss_pred ----hHHHHHHHHHCC-----CeEEEEC
Confidence 123555555666 7776554
No 77
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=81.74 E-value=8.9 Score=32.35 Aligned_cols=86 Identities=9% Similarity=0.047 Sum_probs=52.0
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHH----Hhc-ccCCEEEEcCCCCCCc
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLF----EKL-ELVNGVLYTGGWAKDG 133 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~----~~l-~~iDGlIl~GG~~~~p 133 (278)
...+||++..... ......+.....+.+++.|..+++...+.+.+... .++ ..+||||+.+....
T Consensus 7 ~~~~Ig~i~~~~~--------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-- 76 (293)
T 3l6u_A 7 KRNIVGFTIVNDK--------HEFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDV-- 76 (293)
T ss_dssp --CEEEEEESCSC--------SHHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTT--
T ss_pred CCcEEEEEEecCC--------cHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChH--
Confidence 4468999875321 11234445667778888999999887665543222 222 47999999875431
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 134 LYYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 134 ~~~~~~~~li~~al~~~~~g~~~PVLGICl 163 (278)
. ....++.+.+.+ +|+.-+..
T Consensus 77 ~----~~~~~~~~~~~~-----iPvV~~~~ 97 (293)
T 3l6u_A 77 Y----IGSAIEEAKKAG-----IPVFAIDR 97 (293)
T ss_dssp T----THHHHHHHHHTT-----CCEEEESS
T ss_pred H----HHHHHHHHHHcC-----CCEEEecC
Confidence 1 123556666667 88877643
No 78
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=80.76 E-value=1.3 Score=38.84 Aligned_cols=83 Identities=19% Similarity=0.174 Sum_probs=47.3
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCC--------ChhhHHHhcccCCEEEEcCCCCCC
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE--------PEDVLFEKLELVNGVLYTGGWAKD 132 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~--------~~~~l~~~l~~iDGlIl~GG~~~~ 132 (278)
..|+|..+|.+.. ..-+.....+++++.|..+...+... .........+.+|.||.-||..
T Consensus 6 kki~ii~np~~~~---------~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~GGDG-- 74 (292)
T 2an1_A 6 KCIGIVGHPRHPT---------ALTTHEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEIGQQADLAVVVGGDG-- 74 (292)
T ss_dssp CEEEEECC----------------CHHHHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHHHHHCSEEEECSCHH--
T ss_pred cEEEEEEcCCCHH---------HHHHHHHHHHHHHHCCCEEEEecchhhhcccccccccchhhcccCCCEEEEEcCcH--
Confidence 4699999986421 11234668899999999877653110 0000112234689999999954
Q ss_pred ccchHHHHHHHHHHHHhcCCCCCCcEEEEech
Q 023716 133 GLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (278)
Q Consensus 133 p~~~~~~~~li~~al~~~~~g~~~PVLGIClG 164 (278)
+....++.....+ .|++||=.|
T Consensus 75 -----T~l~a~~~~~~~~-----~P~lGI~~G 96 (292)
T 2an1_A 75 -----NMLGAARTLARYD-----INVIGINRG 96 (292)
T ss_dssp -----HHHHHHHHHTTSS-----CEEEEBCSS
T ss_pred -----HHHHHHHHhhcCC-----CCEEEEECC
Confidence 3333444443344 899999755
No 79
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=80.40 E-value=11 Score=31.68 Aligned_cols=84 Identities=15% Similarity=0.164 Sum_probs=51.6
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhH----HHhc-ccCCEEEEcCCCCCCcc
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVL----FEKL-ELVNGVLYTGGWAKDGL 134 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l----~~~l-~~iDGlIl~GG~~~~p~ 134 (278)
..+||++..... .....-+.....+.+++.|..+++.....+.+.. ..++ .++||||+.+...
T Consensus 5 ~~~Ig~i~~~~~--------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---- 72 (291)
T 3l49_A 5 GKTIGITAIGTD--------HDWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNL---- 72 (291)
T ss_dssp TCEEEEEESCCS--------SHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCH----
T ss_pred CcEEEEEeCCCC--------ChHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh----
Confidence 458999875321 1123334566777888899999888766554322 2222 4799999986532
Q ss_pred chHHHHHHHHHHHHhcCCCCCCcEEEEe
Q 023716 135 YYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (278)
Q Consensus 135 ~~~~~~~li~~al~~~~~g~~~PVLGIC 162 (278)
......++.+.+.+ +|+..+-
T Consensus 73 --~~~~~~~~~~~~~~-----iPvV~~~ 93 (291)
T 3l49_A 73 --DVLNPWLQKINDAG-----IPLFTVD 93 (291)
T ss_dssp --HHHHHHHHHHHHTT-----CCEEEES
T ss_pred --hhhHHHHHHHHHCC-----CcEEEec
Confidence 12234566666667 8877654
No 80
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=80.18 E-value=2.9 Score=37.08 Aligned_cols=82 Identities=18% Similarity=0.164 Sum_probs=47.3
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCCh------------------hhH--H-HhcccC
Q 023716 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE------------------DVL--F-EKLELV 120 (278)
Q Consensus 62 vIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~------------------~~l--~-~~l~~i 120 (278)
.|+|..+|.... ..-+.....++|++.|..+......... +.. . ...+.+
T Consensus 6 ki~iI~n~~~~~---------~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 76 (307)
T 1u0t_A 6 SVLLVVHTGRDE---------ATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGC 76 (307)
T ss_dssp EEEEEESSSGGG---------GSHHHHHHHHHHHTTTCEEEEEC-----------------------------------C
T ss_pred EEEEEEeCCCHH---------HHHHHHHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccCC
Confidence 589998885421 1223567889999999987765432211 000 0 133467
Q ss_pred CEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEech
Q 023716 121 NGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (278)
Q Consensus 121 DGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG 164 (278)
|-||.-||.. +.....+.....+ .|++||=.|
T Consensus 77 d~vi~~GGDG-------T~l~a~~~~~~~~-----~pvlgi~~G 108 (307)
T 1u0t_A 77 ELVLVLGGDG-------TFLRAAELARNAS-----IPVLGVNLG 108 (307)
T ss_dssp CCEEEEECHH-------HHHHHHHHHHHHT-----CCEEEEECS
T ss_pred CEEEEEeCCH-------HHHHHHHHhccCC-----CCEEEEeCC
Confidence 8888888854 3334444444556 899999776
No 81
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=80.06 E-value=10 Score=31.83 Aligned_cols=83 Identities=12% Similarity=0.064 Sum_probs=51.2
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHH----Hhc-ccCCEEEEcCCCCCCc
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLF----EKL-ELVNGVLYTGGWAKDG 133 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~----~~l-~~iDGlIl~GG~~~~p 133 (278)
...+||++..... + ....-+.....+.+++.|..+++...+.+.+... .+. .++||||+.+...
T Consensus 6 ~s~~Igvi~~~~~-------~-~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--- 74 (276)
T 3jy6_A 6 SSKLIAVIVANID-------D-YFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN--- 74 (276)
T ss_dssp CCCEEEEEESCTT-------S-HHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC---
T ss_pred CCcEEEEEeCCCC-------c-hHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc---
Confidence 3468999875321 1 1234445566677888999998887665543222 222 4799999987643
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 134 LYYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 134 ~~~~~~~~li~~al~~~~~g~~~PVLGICl 163 (278)
...++.+.+.+ +|+.-+.+
T Consensus 75 ------~~~~~~l~~~~-----iPvV~i~~ 93 (276)
T 3jy6_A 75 ------PQTVQEILHQQ-----MPVVSVDR 93 (276)
T ss_dssp ------HHHHHHHHTTS-----SCEEEESC
T ss_pred ------HHHHHHHHHCC-----CCEEEEec
Confidence 23455555566 88776654
No 82
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=79.66 E-value=9.8 Score=32.40 Aligned_cols=85 Identities=15% Similarity=0.046 Sum_probs=51.1
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCC--CChhh----HHHhc-ccCCEEEEcCCCCC
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN--EPEDV----LFEKL-ELVNGVLYTGGWAK 131 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~--~~~~~----l~~~l-~~iDGlIl~GG~~~ 131 (278)
.+..||++..... ......+.....+.+++.|..++....+ .+.+. +..++ .++||||+.+....
T Consensus 2 ~~~~Igvi~~~~~--------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~ 73 (297)
T 3rot_A 2 VRDKYYLITHGSQ--------DPYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDT 73 (297)
T ss_dssp -CCEEEEECSCCC--------SHHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSS
T ss_pred ceEEEEEEecCCC--------CchHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHH
Confidence 4568999875431 1224445566778888899998877644 23322 22222 47999999765331
Q ss_pred CccchHHHHHHHHHHHHhcCCCCCCcEEEEe
Q 023716 132 DGLYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (278)
Q Consensus 132 ~p~~~~~~~~li~~al~~~~~g~~~PVLGIC 162 (278)
. ....++.+.+.+ +|+.-+-
T Consensus 74 --~----~~~~~~~~~~~g-----iPvV~~~ 93 (297)
T 3rot_A 74 --A----FSKSLQRANKLN-----IPVIAVD 93 (297)
T ss_dssp --T----THHHHHHHHHHT-----CCEEEES
T ss_pred --H----HHHHHHHHHHCC-----CCEEEEc
Confidence 1 123556666677 8877664
No 83
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=78.77 E-value=16 Score=30.32 Aligned_cols=82 Identities=11% Similarity=0.133 Sum_probs=48.3
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhH----HHhc-ccCCEEEEcCCCCCCccc
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVL----FEKL-ELVNGVLYTGGWAKDGLY 135 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l----~~~l-~~iDGlIl~GG~~~~p~~ 135 (278)
.+||++..... + ....-+.....+.+++.|..+++...+.+.+.. ..+. .++||+|+.+.......
T Consensus 3 ~~Igvi~~~~~-------~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~- 73 (272)
T 3o74_A 3 RTLGFILPDLE-------N-PSYARIAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCLPPEDD- 73 (272)
T ss_dssp CEEEEEESCTT-------C-HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSSCC-
T ss_pred eEEEEEeCCCc-------C-hhHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCccccHH-
Confidence 47899865321 1 123344566677888899999988766544322 2222 47999999876532222
Q ss_pred hHHHHHHHHHHHHhcCCCCCCcEEEEe
Q 023716 136 YAIVEKVFKKILEKNDAGDHFPLYAHC 162 (278)
Q Consensus 136 ~~~~~~li~~al~~~~~g~~~PVLGIC 162 (278)
.++.+.+.+ +|+.-+.
T Consensus 74 ------~~~~~~~~~-----iPvV~~~ 89 (272)
T 3o74_A 74 ------SYRELQDKG-----LPVIAID 89 (272)
T ss_dssp ------HHHHHHHTT-----CCEEEES
T ss_pred ------HHHHHHHcC-----CCEEEEc
Confidence 334444555 7766554
No 84
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=78.64 E-value=11 Score=32.48 Aligned_cols=85 Identities=13% Similarity=0.026 Sum_probs=52.4
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCCCCCCc
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGWAKDG 133 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~~~~p 133 (278)
.+.+|||+...... .....+.....+.+++.|..+++...+.+.+. +..++ .++||||+.+...
T Consensus 2 ~~~~Igvi~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~--- 70 (330)
T 3uug_A 2 DKGSVGIAMPTKSS--------ARWIDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDG--- 70 (330)
T ss_dssp CCCEEEEEECCSSS--------THHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSG---
T ss_pred CCcEEEEEeCCCcc--------hHHHHHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCc---
Confidence 35789998754221 23444556677888899999888775544432 22222 4799999987532
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCcEEEEe
Q 023716 134 LYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (278)
Q Consensus 134 ~~~~~~~~li~~al~~~~~g~~~PVLGIC 162 (278)
. .....++.+.+.+ +|+.-+.
T Consensus 71 ~---~~~~~~~~~~~~g-----iPvV~~~ 91 (330)
T 3uug_A 71 T---TLSDVLKQAGEQG-----IKVIAYD 91 (330)
T ss_dssp G---GGHHHHHHHHHTT-----CEEEEES
T ss_pred h---hHHHHHHHHHHCC-----CCEEEEC
Confidence 1 1124566666667 7876654
No 85
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=78.18 E-value=6.5 Score=32.10 Aligned_cols=71 Identities=11% Similarity=0.153 Sum_probs=39.9
Q ss_pred CCCCcEEEEeCCCCCCC----C-CCCCCCCchhhhHHHHHHHHHHcCCeEEEEeC-CCChhhHH----Hhccc--CCEEE
Q 023716 57 LNYRPVIGIVTHPGDGA----S-GRLNNATNASYIAASYVKFVESAGARVIPLIY-NEPEDVLF----EKLEL--VNGVL 124 (278)
Q Consensus 57 ~~~rPvIGIl~~~~~~~----~-~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~-~~~~~~l~----~~l~~--iDGlI 124 (278)
...+|.+||++--.... . |...+ .+ ......++++.|+.++.... .++.+.+. +.++. +|-||
T Consensus 12 ~~~~~rv~IittGde~~~~~~~~G~i~D-sn----~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVi 86 (178)
T 2pjk_A 12 APKSLNFYVITISTSRYEKLLKKEPIVD-ES----GDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVII 86 (178)
T ss_dssp -CCCCEEEEEEECHHHHHHHHTTCCCCC-HH----HHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEE
T ss_pred CCCCCEEEEEEeCcccccccccCCeEee-hH----HHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 35679999987532100 1 22211 11 12344688999998765422 23344444 34444 89999
Q ss_pred EcCCCCCC
Q 023716 125 YTGGWAKD 132 (278)
Q Consensus 125 l~GG~~~~ 132 (278)
.+||-...
T Consensus 87 ttGG~s~g 94 (178)
T 2pjk_A 87 STGGTGYS 94 (178)
T ss_dssp EESCCSSS
T ss_pred ECCCCCCC
Confidence 99997753
No 86
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=77.64 E-value=5 Score=32.32 Aligned_cols=68 Identities=16% Similarity=0.137 Sum_probs=38.5
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCC-CChhhH----HHhcc--cCCEEEEcCCC
Q 023716 57 LNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN-EPEDVL----FEKLE--LVNGVLYTGGW 129 (278)
Q Consensus 57 ~~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~-~~~~~l----~~~l~--~iDGlIl~GG~ 129 (278)
+..+|.++|++--..- +... +.+. ....++|++.|+.++....- ++.+.+ .+.++ .+|-||.+||-
T Consensus 10 v~~~~rv~Ii~tGdEl--g~i~-Dsn~----~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~ 82 (169)
T 1y5e_A 10 APKEVRCKIVTISDTR--TEET-DKSG----QLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGT 82 (169)
T ss_dssp --CCCEEEEEEECSSC--CTTT-CHHH----HHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCC
T ss_pred cccCCEEEEEEEcCcc--Ceec-cChH----HHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 3567899998743221 2221 1112 22346788899987643222 233333 34455 78999999997
Q ss_pred CC
Q 023716 130 AK 131 (278)
Q Consensus 130 ~~ 131 (278)
..
T Consensus 83 g~ 84 (169)
T 1y5e_A 83 GI 84 (169)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 87
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=77.30 E-value=2.4 Score=35.32 Aligned_cols=68 Identities=19% Similarity=0.234 Sum_probs=35.7
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCe--EE---EEeCCCChhhHH----Hhcc--cCCEEEEc
Q 023716 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGAR--VI---PLIYNEPEDVLF----EKLE--LVNGVLYT 126 (278)
Q Consensus 58 ~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~--~v---~i~~~~~~~~l~----~~l~--~iDGlIl~ 126 (278)
|.+|.++|++--.....|.+.+ .+. ....++|++.|+. ++ +++ ++.+.+. +.++ .+|-||.+
T Consensus 1 ~~~~rv~IIttGdEl~~G~i~D-~n~----~~L~~~L~~~G~~~~v~~~~iV~--Dd~~~I~~al~~a~~~~~~DlVitT 73 (195)
T 1di6_A 1 MATLRIGLVSISDRASSGVYQD-KGI----PALEEWLTSALTTPFELETRLIP--DEQAIIEQTLCELVDEMSCHLVLTT 73 (195)
T ss_dssp -CCEEEEEEEEECC-------C-CHH----HHHHHHHHHHBCSCEEEEEEEEE--SCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred CCCCEEEEEEECCCCCCCeEEc-hHH----HHHHHHHHHcCCCCceEEEEEeC--CCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 3578899977543322233221 111 2244678888876 32 333 2333333 3444 58999999
Q ss_pred CCCCCC
Q 023716 127 GGWAKD 132 (278)
Q Consensus 127 GG~~~~ 132 (278)
||-...
T Consensus 74 GGtg~g 79 (195)
T 1di6_A 74 GGTGPA 79 (195)
T ss_dssp SCCSSS
T ss_pred CCCCCC
Confidence 997753
No 88
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=77.30 E-value=13 Score=30.90 Aligned_cols=83 Identities=12% Similarity=0.071 Sum_probs=49.0
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCC--CChhh----HHHhc-cc-CCEEEEcCCCCCC
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN--EPEDV----LFEKL-EL-VNGVLYTGGWAKD 132 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~--~~~~~----l~~~l-~~-iDGlIl~GG~~~~ 132 (278)
|.||++..... .....-+.....+.+++.|..+++...+ .+.+. +..++ .+ +||||+.+....
T Consensus 1 ~~Ig~i~~~~~--------~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~- 71 (276)
T 3ksm_A 1 PKLLLVLKGDS--------NAYWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAE- 71 (276)
T ss_dssp CEEEEECSCSS--------STHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTT-
T ss_pred CeEEEEeCCCC--------ChHHHHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHH-
Confidence 57899875321 1224445566777888899998877532 23222 22222 35 999999875321
Q ss_pred ccchHHHHHHHHHHHHhcCCCCCCcEEEEe
Q 023716 133 GLYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (278)
Q Consensus 133 p~~~~~~~~li~~al~~~~~g~~~PVLGIC 162 (278)
.....++.+.+.+ +|+..+.
T Consensus 72 -----~~~~~~~~~~~~~-----ipvV~~~ 91 (276)
T 3ksm_A 72 -----DLTPSVAQYRARN-----IPVLVVD 91 (276)
T ss_dssp -----TTHHHHHHHHHTT-----CCEEEES
T ss_pred -----HHHHHHHHHHHCC-----CcEEEEe
Confidence 1123556666667 8887664
No 89
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=76.93 E-value=1.4 Score=40.46 Aligned_cols=83 Identities=11% Similarity=0.007 Sum_probs=49.6
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCCh--------------------hhHHHhcccCC
Q 023716 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE--------------------DVLFEKLELVN 121 (278)
Q Consensus 62 vIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~--------------------~~l~~~l~~iD 121 (278)
.|||++.+.+. .........++||.+.|..+.+=...... ....+.-+.+|
T Consensus 40 ~I~iv~K~~~~---------~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 110 (365)
T 3pfn_A 40 SVLVIKKMRDA---------SLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQID 110 (365)
T ss_dssp EEEEEECTTCG---------GGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCCTTTCS
T ss_pred EEEEEecCCCH---------HHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhcccCCC
Confidence 69999988642 23445677899999999877653211000 00011235689
Q ss_pred EEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechH
Q 023716 122 GVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (278)
Q Consensus 122 GlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~ 165 (278)
-+|.-||.+ + +++.+... .+...||+||-+|.
T Consensus 111 lvI~lGGDG-------T---~L~aa~~~--~~~~~PvlGiN~G~ 142 (365)
T 3pfn_A 111 FIICLGGDG-------T---LLYASSLF--QGSVPPVMAFHLGS 142 (365)
T ss_dssp EEEEESSTT-------H---HHHHHHHC--SSSCCCEEEEESSS
T ss_pred EEEEEcChH-------H---HHHHHHHh--ccCCCCEEEEcCCC
Confidence 999999976 2 22222211 12338999999873
No 90
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=74.96 E-value=2.3 Score=34.79 Aligned_cols=67 Identities=25% Similarity=0.208 Sum_probs=37.4
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCC-CChhhHH----HhcccCCEEEEcCCCCC
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN-EPEDVLF----EKLELVNGVLYTGGWAK 131 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~-~~~~~l~----~~l~~iDGlIl~GG~~~ 131 (278)
++.++|++--..--.|+..+ .+. ....+++++.|+.+.....- ++.+.+. +.++.+|-||.+||-..
T Consensus 3 ~~~v~IistGdEll~G~i~D-tN~----~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVittGG~g~ 74 (172)
T 3kbq_A 3 AKNASVITVGNEILKGRTVN-TNA----AFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSSGGLGP 74 (172)
T ss_dssp -CEEEEEEECHHHHTTSSCC-HHH----HHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEESCCSS
T ss_pred CCEEEEEEEcccccCCcEEe-HHH----HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEcCCCcC
Confidence 47788876532111122211 112 23446889999987654322 3344444 34456899999999764
No 91
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=74.76 E-value=19 Score=30.22 Aligned_cols=88 Identities=13% Similarity=0.236 Sum_probs=49.0
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhh---HHHhc--ccCCEEEEcCCCCCCc
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV---LFEKL--ELVNGVLYTGGWAKDG 133 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~---l~~~l--~~iDGlIl~GG~~~~p 133 (278)
...+||++....... ... .....-+.....+.+++.|..+++...+.+.+. +.+.+ ..+||||+.+....+
T Consensus 7 ~~~~Igvi~~~~~~~--~~~-~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~- 82 (292)
T 3k4h_A 7 TTKTLGLVMPSSASK--AFQ-NPFFPEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSREND- 82 (292)
T ss_dssp CCCEEEEECSSCHHH--HTT-STHHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTTC-
T ss_pred CCCEEEEEecCCccc--ccc-CHHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCCh-
Confidence 446899987541000 001 112344456677788889998887655443332 12222 579999998754321
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCcEEEEe
Q 023716 134 LYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (278)
Q Consensus 134 ~~~~~~~~li~~al~~~~~g~~~PVLGIC 162 (278)
..++.+.+.+ +|+.-+-
T Consensus 83 -------~~~~~l~~~~-----iPvV~~~ 99 (292)
T 3k4h_A 83 -------RIIQYLHEQN-----FPFVLIG 99 (292)
T ss_dssp -------HHHHHHHHTT-----CCEEEES
T ss_pred -------HHHHHHHHCC-----CCEEEEC
Confidence 2444455556 7776553
No 92
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=74.66 E-value=7.6 Score=29.96 Aligned_cols=71 Identities=18% Similarity=0.169 Sum_probs=46.8
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcc--cCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechH
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLE--LVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~--~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~ 165 (278)
..|.+.++..-..+++++-+. ++.+...++ .+-+|||+||...++ .+++.|.+.+ +||+-+=...
T Consensus 42 ~~~~~~~~~~~~~l~I~~G~r-~~~~l~a~~~~~~~~iIlt~g~~~~~-------~i~~~A~~~~-----ipvl~t~~~T 108 (139)
T 2ioj_A 42 QSALRYLREARNAALVTGGDR-SDLLLTALEMPNVRCLILTGNLEPVQ-------LVLTKAEERG-----VPVILTGHDT 108 (139)
T ss_dssp HHHHHHHHTCSSEEEEEETTC-HHHHHHHTTCTTEEEEEEETTCCCCH-------HHHHHHHHHT-----CCEEECSSCH
T ss_pred HHHHHHHhcCCCEEEEEcCCH-HHHHHHHHhCCCCcEEEEcCCCCCCH-------HHHHHHHHCC-----CeEEEECCCH
Confidence 456677765434677776554 344444444 788999999976432 3667777888 9999888766
Q ss_pred HHHHHH
Q 023716 166 ELLTMI 171 (278)
Q Consensus 166 QlL~~~ 171 (278)
--.+..
T Consensus 109 ~~~~~~ 114 (139)
T 2ioj_A 109 LTAVSR 114 (139)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 93
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=74.38 E-value=8.2 Score=31.18 Aligned_cols=67 Identities=22% Similarity=0.175 Sum_probs=38.4
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeC-CCChhhHHH----hcc--cCCEEEEcCCCC
Q 023716 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIY-NEPEDVLFE----KLE--LVNGVLYTGGWA 130 (278)
Q Consensus 58 ~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~-~~~~~~l~~----~l~--~iDGlIl~GG~~ 130 (278)
..+|.++|++--.. .|... +.+. ....++|++.|+.++.... .++.+.+.+ .++ .+|-||.+||-.
T Consensus 8 ~~~~~v~Ii~tGdE--~g~i~-D~n~----~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~g 80 (172)
T 1mkz_A 8 FIPTRIAILTVSNR--RGEED-DTSG----HYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTG 80 (172)
T ss_dssp CCCCEEEEEEECSS--CCGGG-CHHH----HHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCCS
T ss_pred CCCCEEEEEEEeCC--CCccc-CccH----HHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCCC
Confidence 45789999775322 22221 1111 2244688899998764322 223344433 344 389999999976
Q ss_pred C
Q 023716 131 K 131 (278)
Q Consensus 131 ~ 131 (278)
.
T Consensus 81 ~ 81 (172)
T 1mkz_A 81 L 81 (172)
T ss_dssp S
T ss_pred C
Confidence 4
No 94
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=74.35 E-value=10 Score=35.17 Aligned_cols=76 Identities=14% Similarity=0.107 Sum_probs=40.8
Q ss_pred CCCcEEEEeCCCCCCC-CC-CCCCCCchhhhHHHHHHHHHHcCCeEEEEeCC-CChhhHHH----hcccCCEEEEcCCCC
Q 023716 58 NYRPVIGIVTHPGDGA-SG-RLNNATNASYIAASYVKFVESAGARVIPLIYN-EPEDVLFE----KLELVNGVLYTGGWA 130 (278)
Q Consensus 58 ~~rPvIGIl~~~~~~~-~~-~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~-~~~~~l~~----~l~~iDGlIl~GG~~ 130 (278)
..+|.|||++--..-. .+ .+..+.-.+--......++++.|+.++....- ++.+.+.+ .++.+|-||.+||-.
T Consensus 175 ~~~~rv~iistGdEl~~~g~~~~~G~i~dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~al~~a~~~~DlvittGG~s 254 (411)
T 1g8l_A 175 IRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVS 254 (411)
T ss_dssp ECCCEEEEEEECTTEECTTSCCCSSCEECCHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEECSSSC
T ss_pred cCCCEEEEEEcCccccCCCCCCCCCcEEcCchHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHhhcCCEEEECCCCC
Confidence 4689999976432100 00 00011111111223446788999988754222 33444443 445789999999987
Q ss_pred CCc
Q 023716 131 KDG 133 (278)
Q Consensus 131 ~~p 133 (278)
..+
T Consensus 255 ~g~ 257 (411)
T 1g8l_A 255 VGE 257 (411)
T ss_dssp SSS
T ss_pred CCC
Confidence 543
No 95
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=73.40 E-value=20 Score=30.40 Aligned_cols=85 Identities=6% Similarity=-0.052 Sum_probs=49.3
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEE-eCCCChhhH----HHhc-ccCCEEEEcCCCCCCc
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPL-IYNEPEDVL----FEKL-ELVNGVLYTGGWAKDG 133 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i-~~~~~~~~l----~~~l-~~iDGlIl~GG~~~~p 133 (278)
+..||++...... .....+.....+.+++.|..++.+ ..+.+.+.. ..++ .++||||+.+....
T Consensus 4 ~~~I~~i~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~-- 73 (305)
T 3g1w_A 4 NETYMMITFQSGM--------DYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPV-- 73 (305)
T ss_dssp -CEEEEEESSTTS--------THHHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTT--
T ss_pred CceEEEEEccCCC--------hHHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHH--
Confidence 4578887654321 124445566777888899999874 333343322 2222 46999999875431
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 134 LYYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 134 ~~~~~~~~li~~al~~~~~g~~~PVLGICl 163 (278)
. ....++.+.+.+ +|+.-+-+
T Consensus 74 ~----~~~~~~~~~~~~-----iPvV~~~~ 94 (305)
T 3g1w_A 74 E----LTDTINKAVDAG-----IPIVLFDS 94 (305)
T ss_dssp T----THHHHHHHHHTT-----CCEEEESS
T ss_pred H----HHHHHHHHHHCC-----CcEEEECC
Confidence 1 123555566667 88776544
No 96
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=72.83 E-value=19 Score=30.16 Aligned_cols=83 Identities=12% Similarity=0.037 Sum_probs=47.1
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCCCCCCccc
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGWAKDGLY 135 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~~~~p~~ 135 (278)
.+||++..... + ....-+.....+.+++.|..+++.....+.+. +..++ .++||||+.+.... ..
T Consensus 3 ~~Ig~i~~~~~-------~-~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~--~~ 72 (290)
T 2fn9_A 3 GKMAIVISTLN-------N-PWFVVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDAD--GS 72 (290)
T ss_dssp CEEEEEESCSS-------S-HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCTT--TT
T ss_pred eEEEEEeCCCC-------C-hHHHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCChH--HH
Confidence 57899864311 1 12334455667788889999887765444332 22222 47999999865321 11
Q ss_pred hHHHHHHHHHHHHhcCCCCCCcEEEEe
Q 023716 136 YAIVEKVFKKILEKNDAGDHFPLYAHC 162 (278)
Q Consensus 136 ~~~~~~li~~al~~~~~g~~~PVLGIC 162 (278)
...++.+.+.+ +|+..+.
T Consensus 73 ----~~~~~~~~~~~-----iPvV~~~ 90 (290)
T 2fn9_A 73 ----IANVKRAKEAG-----IPVFCVD 90 (290)
T ss_dssp ----HHHHHHHHHTT-----CCEEEES
T ss_pred ----HHHHHHHHHCC-----CeEEEEe
Confidence 12344444556 7776554
No 97
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=72.55 E-value=7.7 Score=34.17 Aligned_cols=70 Identities=13% Similarity=0.122 Sum_probs=47.0
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHHHHH
Q 023716 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEK 141 (278)
Q Consensus 62 vIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~ 141 (278)
.|||..++.. . .....++|++.|..+....... ..++.+|.+|.-||.. +
T Consensus 31 ki~iv~~~~~-----------~---~~~l~~~L~~~g~~v~~~~~~~------~~~~~~DlvIvlGGDG-------T--- 80 (278)
T 1z0s_A 31 RAAVVYKTDG-----------H---VKRIEEALKRLEVEVELFNQPS------EELENFDFIVSVGGDG-------T--- 80 (278)
T ss_dssp EEEEEESSST-----------T---HHHHHHHHHHTTCEEEEESSCC------GGGGGSSEEEEEECHH-------H---
T ss_pred EEEEEeCCcH-----------H---HHHHHHHHHHCCCEEEEccccc------cccCCCCEEEEECCCH-------H---
Confidence 4899887632 1 4668899999999887654321 1356899999999954 1
Q ss_pred HHHHHHHhcCCCCCCcEEEEech
Q 023716 142 VFKKILEKNDAGDHFPLYAHCLG 164 (278)
Q Consensus 142 li~~al~~~~~g~~~PVLGIClG 164 (278)
+++.+.. -... +||+||-.|
T Consensus 81 ~L~aa~~--~~~~-~PilGIN~G 100 (278)
T 1z0s_A 81 ILRILQK--LKRC-PPIFGINTG 100 (278)
T ss_dssp HHHHHTT--CSSC-CCEEEEECS
T ss_pred HHHHHHH--hCCC-CcEEEECCC
Confidence 3333322 1223 899999987
No 98
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=71.40 E-value=9.3 Score=35.37 Aligned_cols=76 Identities=11% Similarity=0.165 Sum_probs=38.7
Q ss_pred CCCCcEEEEeCCCCCC--CCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCC-CChhhHH----HhcccCCEEEEcCCC
Q 023716 57 LNYRPVIGIVTHPGDG--ASGRLNNATNASYIAASYVKFVESAGARVIPLIYN-EPEDVLF----EKLELVNGVLYTGGW 129 (278)
Q Consensus 57 ~~~rPvIGIl~~~~~~--~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~-~~~~~l~----~~l~~iDGlIl~GG~ 129 (278)
+..||.|+|++--..- ....+..+.-.+--......++++.|+.++....- ++.+.+. +.++.+|-||.+||-
T Consensus 177 V~~~prv~IistGdEl~~~g~~~~~G~i~DsN~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlVittGG~ 256 (402)
T 1uz5_A 177 VFRKPKVAVISTGNEIVPPGNELKPGQIYDINGRALCDAINELGGEGIFMGVARDDKESLKALIEKAVNVGDVVVISGGA 256 (402)
T ss_dssp EECCCEEEEEEECTTEECTTSCCCTTCEECCHHHHHHHHHHHHTSEEEEEEEECSSHHHHHHHHHHHHHHCSEEEEECCC
T ss_pred ecCCCEEEEEEcCccccCCCCCCCCCcEEcchHHHHHHHHHhCCCeEEEEEEeCCCHHHHHHHHHHHhhCCCEEEEcCCC
Confidence 3468999997643211 00000011111111122446788899988754322 2334443 344568999999998
Q ss_pred CCC
Q 023716 130 AKD 132 (278)
Q Consensus 130 ~~~ 132 (278)
...
T Consensus 257 s~g 259 (402)
T 1uz5_A 257 SGG 259 (402)
T ss_dssp ---
T ss_pred CCC
Confidence 753
No 99
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=71.34 E-value=17 Score=30.35 Aligned_cols=85 Identities=13% Similarity=0.035 Sum_probs=47.3
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCCCCCCcc
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGWAKDGL 134 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~~~~p~ 134 (278)
+++||++..... + .....+.....+.+++.|..+++.....+.+. +..++ .++||+|+.+... + .
T Consensus 1 ~~~Igvi~~~~~-------~-~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~-~-~ 70 (271)
T 2dri_A 1 KDTIALVVSTLN-------N-PFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDS-D-A 70 (271)
T ss_dssp CCEEEEEESCSS-------S-HHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCSST-T-T
T ss_pred CcEEEEEecCCC-------C-HHHHHHHHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh-H-H
Confidence 468999864211 1 12344555666777888998887654433322 22222 4699999976432 1 1
Q ss_pred chHHHHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 135 YYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 135 ~~~~~~~li~~al~~~~~g~~~PVLGICl 163 (278)
. ...++.+.+.+ +|+.-+.+
T Consensus 71 ~----~~~~~~~~~~~-----iPvV~i~~ 90 (271)
T 2dri_A 71 V----GNAVKMANQAN-----IPVITLDR 90 (271)
T ss_dssp T----HHHHHHHHHTT-----CCEEEESS
T ss_pred H----HHHHHHHHHCC-----CcEEEecC
Confidence 1 12345555556 77765543
No 100
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=70.92 E-value=17 Score=30.39 Aligned_cols=61 Identities=11% Similarity=-0.009 Sum_probs=37.1
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCC
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGW 129 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~ 129 (278)
...+||++..... +. ...-+.....+.+++.|..+++...+.+.+.... + ++||||+.+..
T Consensus 7 ~~~~Igvi~~~~~-------~~-~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~-~-~vdgiI~~~~~ 67 (277)
T 3cs3_A 7 QTNIIGVYLADYG-------GS-FYGELLEGIKKGLALFDYEMIVCSGKKSHLFIPE-K-MVDGAIILDWT 67 (277)
T ss_dssp CCCEEEEEECSSC-------TT-THHHHHHHHHHHHHTTTCEEEEEESTTTTTCCCT-T-TCSEEEEECTT
T ss_pred CCcEEEEEecCCC-------Ch-hHHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHhh-c-cccEEEEecCC
Confidence 3468999874321 11 2333445666778889998887765433322111 2 79999998754
No 101
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=70.51 E-value=3.8 Score=33.88 Aligned_cols=71 Identities=15% Similarity=0.030 Sum_probs=39.8
Q ss_pred CCCCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCC-CChhhHH----Hhc-ccCCEEEEcCCC
Q 023716 56 KLNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN-EPEDVLF----EKL-ELVNGVLYTGGW 129 (278)
Q Consensus 56 ~~~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~-~~~~~l~----~~l-~~iDGlIl~GG~ 129 (278)
....+|.|+|++--..-..|. . +.+ ......++++.|+.++....- ++.+.+. +.+ +.+|-||.+||-
T Consensus 26 ~~~~~~rvaIistGdEl~~G~-~-Dsn----~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVIttGGt 99 (185)
T 3rfq_A 26 AELVVGRALVVVVDDRTAHGD-E-DHS----GPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGT 99 (185)
T ss_dssp ---CCEEEEEEEECHHHHTTC-C-CSH----HHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESCC
T ss_pred cCCCCCEEEEEEECcccCCCC-c-CcH----HHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 345789999987532111122 1 111 223456889999987644221 2344443 333 478999999997
Q ss_pred CCC
Q 023716 130 AKD 132 (278)
Q Consensus 130 ~~~ 132 (278)
...
T Consensus 100 s~g 102 (185)
T 3rfq_A 100 GVT 102 (185)
T ss_dssp SSS
T ss_pred CCC
Confidence 753
No 102
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=69.30 E-value=17 Score=30.69 Aligned_cols=64 Identities=16% Similarity=0.102 Sum_probs=40.7
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHH---hc--ccCCEEEEcCCCC
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFE---KL--ELVNGVLYTGGWA 130 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~---~l--~~iDGlIl~GG~~ 130 (278)
...+||++..... + ....-+.....+.+++.|..+++...+.+.+...+ .+ ..+||||+.+...
T Consensus 7 ~~~~Igvv~~~~~-------~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 75 (291)
T 3egc_A 7 RSNVVGLIVSDIE-------N-VFFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEG 75 (291)
T ss_dssp CCCEEEEEESCTT-------S-HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS
T ss_pred CCcEEEEEECCCc-------c-hHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 4468999874321 1 12334455677788889999998876655433222 12 4799999988643
No 103
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=69.07 E-value=31 Score=29.80 Aligned_cols=87 Identities=9% Similarity=0.031 Sum_probs=49.8
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhH----HHhc-ccCCEEEEcCCCCCCc
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVL----FEKL-ELVNGVLYTGGWAKDG 133 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l----~~~l-~~iDGlIl~GG~~~~p 133 (278)
....||++..... +.+ ....-+.....+.+++.|..+++.....+.+.. ..+. ..+||||+.+.... .
T Consensus 60 ~~~~Igvi~~~~~-----~~~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~ 132 (338)
T 3dbi_A 60 STQTLGLVVTNTL-----YHG-IYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLS-V 132 (338)
T ss_dssp CCSEEEEEECTTT-----TST-THHHHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSSSC-H
T ss_pred CCCEEEEEecCCc-----ccC-hhHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCC-h
Confidence 3468999875310 011 223445566777888899999888755444322 2222 47999999875431 1
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 134 LYYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 134 ~~~~~~~~li~~al~~~~~g~~~PVLGICl 163 (278)
..+.+.+.+.+ +|+.-+.+
T Consensus 133 ------~~~~~~~~~~~-----iPvV~~~~ 151 (338)
T 3dbi_A 133 ------DEIDDIIDAHS-----QPIMVLNR 151 (338)
T ss_dssp ------HHHHHHHHHCS-----SCEEEESS
T ss_pred ------HHHHHHHHcCC-----CCEEEEcC
Confidence 12334344445 77766653
No 104
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=68.73 E-value=42 Score=29.01 Aligned_cols=63 Identities=13% Similarity=0.013 Sum_probs=38.8
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHh----c-ccCCEEEEcCCC
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEK----L-ELVNGVLYTGGW 129 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~----l-~~iDGlIl~GG~ 129 (278)
....||++...... . ...-+.....+.+++.|..+++...+.+.+...+. + ..+||||+.+..
T Consensus 61 ~~~~Igvi~~~~~~-------~-~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~ 128 (339)
T 3h5o_A 61 KSRTVLVLIPSLAN-------T-VFLETLTGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGLS 128 (339)
T ss_dssp --CEEEEEESCSTT-------C-TTHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCCEEEEEeCCCCC-------H-HHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 34689998653221 1 23334566777888899998887765544332222 2 479999998754
No 105
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=68.50 E-value=24 Score=29.64 Aligned_cols=83 Identities=16% Similarity=0.097 Sum_probs=45.9
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCCCCCCccc
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGWAKDGLY 135 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~~~~p~~ 135 (278)
.+||++..... + .....+.....+.+++.|..+++.....+.+. +..++ .++||||+.+... + ..
T Consensus 2 ~~Igvi~~~~~-------~-~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~-~-~~ 71 (283)
T 2ioy_A 2 KTIGLVISTLN-------N-PFFVTLKNGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQQKVDVLLINPVDS-D-AV 71 (283)
T ss_dssp CEEEEEESCSS-------S-HHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSST-T-TT
T ss_pred eEEEEEecCCC-------C-HHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCch-h-hh
Confidence 47888763211 1 12334455566777888999887765444322 22222 4699999976422 1 11
Q ss_pred hHHHHHHHHHHHHhcCCCCCCcEEEEe
Q 023716 136 YAIVEKVFKKILEKNDAGDHFPLYAHC 162 (278)
Q Consensus 136 ~~~~~~li~~al~~~~~g~~~PVLGIC 162 (278)
...++.+.+.+ +|+.-+.
T Consensus 72 ----~~~~~~~~~~~-----iPvV~~~ 89 (283)
T 2ioy_A 72 ----VTAIKEANSKN-----IPVITID 89 (283)
T ss_dssp ----HHHHHHHHHTT-----CCEEEES
T ss_pred ----HHHHHHHHHCC-----CeEEEec
Confidence 12344455556 7776554
No 106
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=68.15 E-value=6.8 Score=32.38 Aligned_cols=79 Identities=10% Similarity=0.052 Sum_probs=48.7
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCC--ChhhHHHhcccCCEEEEcCCCCCCccchH
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE--PEDVLFEKLELVNGVLYTGGWAKDGLYYA 137 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~--~~~~l~~~l~~iDGlIl~GG~~~~p~~~~ 137 (278)
-.+..|.++|..... .+....-+...+++.+++.|..+..+.... +.+.+.+.+..+|+|||. .|.|+.
T Consensus 13 ~~iLii~gsP~~~~s----~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~AD~iV~~-----~P~y~~ 83 (204)
T 2amj_A 13 SNILIINGAKKFAHS----NGQLNDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWADVVIWQ-----MPGWWM 83 (204)
T ss_dssp CEEEEEECCC----------CHHHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHHCSEEEEE-----EECBTT
T ss_pred cCEEEEEcCCCcccC----cCcHHHHHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHHhCCEEEEE-----CCcccc
Confidence 357888888863210 112345567778888888899998886653 344556678889999985 344442
Q ss_pred ----HHHHHHHHHH
Q 023716 138 ----IVEKVFKKIL 147 (278)
Q Consensus 138 ----~~~~li~~al 147 (278)
..+.+++.+.
T Consensus 84 s~pa~LK~~iDrv~ 97 (204)
T 2amj_A 84 GAPWTVKKYIDDVF 97 (204)
T ss_dssp BCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh
Confidence 3345555443
No 107
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=68.10 E-value=37 Score=28.78 Aligned_cols=83 Identities=16% Similarity=0.125 Sum_probs=49.2
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHH---Hhc--ccCCEEEEcCCCCCCcc
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLF---EKL--ELVNGVLYTGGWAKDGL 134 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~---~~l--~~iDGlIl~GG~~~~p~ 134 (278)
..+||++..... + ....-+.....+.+++.|..+++.....+.+... +.+ ..+||||+.+.....+
T Consensus 15 s~~Igvi~~~~~-------~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~- 85 (303)
T 3kke_A 15 SGTIGLIVPDVN-------N-AVFADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDFDD- 85 (303)
T ss_dssp --CEEEEESCTT-------S-TTHHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTCCH-
T ss_pred CCEEEEEeCCCc-------C-hHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCcH-
Confidence 457999875321 1 1234455667788888999998887655433222 222 4799999987644221
Q ss_pred chHHHHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 135 YYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 135 ~~~~~~~li~~al~~~~~g~~~PVLGICl 163 (278)
+.++.+.+ + +|+.-+.+
T Consensus 86 ------~~~~~l~~-~-----iPvV~i~~ 102 (303)
T 3kke_A 86 ------DMLAAVLE-G-----VPAVTINS 102 (303)
T ss_dssp ------HHHHHHHT-T-----SCEEEESC
T ss_pred ------HHHHHHhC-C-----CCEEEECC
Confidence 13444444 6 88876654
No 108
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=67.99 E-value=33 Score=28.88 Aligned_cols=83 Identities=7% Similarity=-0.074 Sum_probs=48.1
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChh-------hHHHhc-ccCCEEEEcCCCCC
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPED-------VLFEKL-ELVNGVLYTGGWAK 131 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~-------~l~~~l-~~iDGlIl~GG~~~ 131 (278)
..+||++..... + ....-+.....+.+++.|..+++...+.+.+ .+..+. .++||||+.+...
T Consensus 8 ~~~Ig~i~~~~~-------~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~- 78 (290)
T 2rgy_A 8 LGIIGLFVPTFF-------G-SYYGTILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDL- 78 (290)
T ss_dssp CCEEEEECSCSC-------S-HHHHHHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSS-
T ss_pred CCeEEEEeCCCC-------C-chHHHHHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecCCC-
Confidence 358999874311 1 1233344556677888999888765543322 222222 4799999987543
Q ss_pred CccchHHHHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 132 DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 132 ~p~~~~~~~~li~~al~~~~~g~~~PVLGICl 163 (278)
+ ...++.+.+.+ +|+.-+.+
T Consensus 79 ~-------~~~~~~l~~~~-----iPvV~~~~ 98 (290)
T 2rgy_A 79 H-------DEDLDELHRMH-----PKMVFLNR 98 (290)
T ss_dssp C-------HHHHHHHHHHC-----SSEEEESS
T ss_pred C-------HHHHHHHhhcC-----CCEEEEcc
Confidence 1 12344444566 88877654
No 109
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=67.07 E-value=7.8 Score=31.53 Aligned_cols=90 Identities=10% Similarity=0.066 Sum_probs=48.2
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHH-HHHcCCeEEEEeCCCC--------------hhhHHHhcccCCEEEE
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKF-VESAGARVIPLIYNEP--------------EDVLFEKLELVNGVLY 125 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~-le~~Ga~~v~i~~~~~--------------~~~l~~~l~~iDGlIl 125 (278)
.++.|...+.. ......++..+.+. ++..|..+..+..... .+.+.+.+...|+|||
T Consensus 4 kilii~gS~r~--------~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~ 75 (197)
T 2vzf_A 4 SIVAISGSPSR--------NSTTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIV 75 (197)
T ss_dssp EEEEEECCSST--------TCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEE
T ss_pred eEEEEECCCCC--------CChHHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEE
Confidence 35666666532 12355566666777 7888988887765431 1223345678999998
Q ss_pred cCCCCCCccchHHHHHHHHHHHHhc--CCCCCCcEEEEec
Q 023716 126 TGGWAKDGLYYAIVEKVFKKILEKN--DAGDHFPLYAHCL 163 (278)
Q Consensus 126 ~GG~~~~p~~~~~~~~li~~al~~~--~~g~~~PVLGICl 163 (278)
.- |.|.......++.+++.- ..-.++|+.-++-
T Consensus 76 ~s-----P~y~~~~p~~lK~~ld~l~~~~~~gK~~~~~~t 110 (197)
T 2vzf_A 76 AT-----PIYKASYTGLLKAFLDILPQFALAGKAALPLAT 110 (197)
T ss_dssp EE-----ECBTTBCCHHHHHHHTTSCTTTTTTCEEEEEEE
T ss_pred Ee-----CccCCCCCHHHHHHHHhccccccCCCEEEEEEE
Confidence 52 333322122333333321 1233478776664
No 110
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=66.80 E-value=13 Score=31.85 Aligned_cols=90 Identities=12% Similarity=-0.016 Sum_probs=52.5
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCC------------hhhHHHhcccCCEEEEcCC
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP------------EDVLFEKLELVNGVLYTGG 128 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~------------~~~l~~~l~~iDGlIl~GG 128 (278)
.+++|.+.+..+ ....-+...+.+.+++.|+.+..+....- ...+.+.+..+|||||.
T Consensus 36 kIliI~GS~r~~--------s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~-- 105 (247)
T 2q62_A 36 RILILYGSLRTV--------SYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWV-- 105 (247)
T ss_dssp EEEEEECCCCSS--------CHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEE--
T ss_pred eEEEEEccCCCC--------CHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEE--
Confidence 477888877531 22445566677788888998887754331 23455677889999985
Q ss_pred CCCCccch----HHHHHHHHHHHHh---cCCCCCCcEEEEec
Q 023716 129 WAKDGLYY----AIVEKVFKKILEK---NDAGDHFPLYAHCL 163 (278)
Q Consensus 129 ~~~~p~~~----~~~~~li~~al~~---~~~g~~~PVLGICl 163 (278)
.|.|+ ...+.++++.... ...=.++|+.-|+-
T Consensus 106 ---sP~Yn~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~t 144 (247)
T 2q62_A 106 ---SPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQV 144 (247)
T ss_dssp ---EECSSSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEE
T ss_pred ---eCCCCCCccHHHHHHHHHhhhccCcccccCCCEEEEEEe
Confidence 34443 3344455544221 01123478766664
No 111
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=66.61 E-value=38 Score=28.40 Aligned_cols=86 Identities=19% Similarity=0.137 Sum_probs=46.9
Q ss_pred CcEEEEeCCC-CCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCCh----hhHHHhc-ccCCEEEEcCCCCCCc
Q 023716 60 RPVIGIVTHP-GDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE----DVLFEKL-ELVNGVLYTGGWAKDG 133 (278)
Q Consensus 60 rPvIGIl~~~-~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~----~~l~~~l-~~iDGlIl~GG~~~~p 133 (278)
..+||++... ..+. .+ ....-+.....+.+++.|..+++...+.+. +.+..+. ..+||||+.+....+
T Consensus 4 s~~Ig~i~~~~~~~~----~~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~- 77 (287)
T 3bbl_A 4 SFMIGYSWTQTEPGQ----VN-HILDQFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSINYND- 77 (287)
T ss_dssp CCEEEECCCCCCTTC----SC-CTHHHHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTTCCSEEEECSCCTTC-
T ss_pred eeEEEEEeccccccc----CC-hhHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcCCCCEEEEeecCCCc-
Confidence 3589998743 2000 01 123344556677888899988776433222 1233322 479999998754311
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 134 LYYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 134 ~~~~~~~~li~~al~~~~~g~~~PVLGICl 163 (278)
..++.+.+.+ +|+..+.+
T Consensus 78 -------~~~~~l~~~~-----iPvV~~~~ 95 (287)
T 3bbl_A 78 -------PRVQFLLKQK-----FPFVAFGR 95 (287)
T ss_dssp -------HHHHHHHHTT-----CCEEEESC
T ss_pred -------HHHHHHHhcC-----CCEEEECC
Confidence 2334444455 77766643
No 112
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=65.92 E-value=21 Score=30.19 Aligned_cols=83 Identities=10% Similarity=-0.048 Sum_probs=50.1
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCCCCCCcc
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGWAKDGL 134 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~~~~p~ 134 (278)
..+||++..... ......+.....+.+++.|..++..... +.+. +..++ .++||||+.+... .
T Consensus 2 ~~~Ig~i~~~~~--------~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~i~~l~~~~vdgiii~~~~~---~ 69 (306)
T 8abp_A 2 NLKLGFLVKQPE--------EPWFQTEWKFADKAGKDLGFEVIKIAVP-DGEKTLNAIDSLAASGAKGFVICTPDP---K 69 (306)
T ss_dssp CEEEEEEESCTT--------SHHHHHHHHHHHHHHHHHTEEEEEEECC-SHHHHHHHHHHHHHTTCCEEEEECSCG---G
T ss_pred CeEEEEEeCCCC--------chHHHHHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEeCCCc---h
Confidence 357999865321 1124445566777888889988877653 3332 22222 4799999987532 1
Q ss_pred chHHHHHHHHHHHHhcCCCCCCcEEEEe
Q 023716 135 YYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (278)
Q Consensus 135 ~~~~~~~li~~al~~~~~g~~~PVLGIC 162 (278)
.....++.+.+.+ +|+.-+-
T Consensus 70 ---~~~~~~~~~~~~~-----iPvV~~~ 89 (306)
T 8abp_A 70 ---LGSAIVAKARGYD-----MKVIAVD 89 (306)
T ss_dssp ---GHHHHHHHHHHTT-----CEEEEES
T ss_pred ---hhHHHHHHHHHCC-----CcEEEeC
Confidence 1234566666677 8886654
No 113
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=65.34 E-value=6.3 Score=30.16 Aligned_cols=74 Identities=16% Similarity=0.015 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCeEEEEeCCCCh-------hhHHHhcccCCEEEEcCCCCCCccchHH----------------HHHHHH
Q 023716 88 ASYVKFVESAGARVIPLIYNEPE-------DVLFEKLELVNGVLYTGGWAKDGLYYAI----------------VEKVFK 144 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~-------~~l~~~l~~iDGlIl~GG~~~~p~~~~~----------------~~~li~ 144 (278)
....++|.+.|.++.++....++ ..+.++-+ +|-+++.=.+..-+...++ .+++.+
T Consensus 21 ~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~dlp~-vDlavi~~p~~~v~~~v~e~~~~g~k~v~~~~G~~~~e~~~ 99 (122)
T 3ff4_A 21 YLAAERLKSHGHEFIPVGRKKGEVLGKTIINERPVIEG-VDTVTLYINPQNQLSEYNYILSLKPKRVIFNPGTENEELEE 99 (122)
T ss_dssp HHHHHHHHHHTCCEEEESSSCSEETTEECBCSCCCCTT-CCEEEECSCHHHHGGGHHHHHHHCCSEEEECTTCCCHHHHH
T ss_pred HHHHHHHHHCCCeEEEECCCCCcCCCeeccCChHHCCC-CCEEEEEeCHHHHHHHHHHHHhcCCCEEEECCCCChHHHHH
Confidence 34668888889988888554321 01111122 4554443222111111111 146777
Q ss_pred HHHHhcCCCCCCcEEEEechHHH
Q 023716 145 KILEKNDAGDHFPLYAHCLGFEL 167 (278)
Q Consensus 145 ~al~~~~~g~~~PVLGIClG~Ql 167 (278)
.+.+.+ +.++|=|+|+++
T Consensus 100 ~a~~~G-----irvv~nC~gv~l 117 (122)
T 3ff4_A 100 ILSENG-----IEPVIGCTLVML 117 (122)
T ss_dssp HHHHTT-----CEEEESCHHHHH
T ss_pred HHHHcC-----CeEECCcCeEEe
Confidence 777777 888888888765
No 114
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=65.04 E-value=25 Score=30.33 Aligned_cols=85 Identities=8% Similarity=-0.029 Sum_probs=49.9
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-cc--CCEEEEcCCCCCC
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-EL--VNGVLYTGGWAKD 132 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~--iDGlIl~GG~~~~ 132 (278)
..+||++..... + ....-+.....+.+++.|..+++.....+.+. +..++ .+ +||||+.+...
T Consensus 5 s~~Igvi~~~~~-------~-~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~-- 74 (332)
T 2rjo_A 5 QTTLACSFRSLT-------N-PYYTAFNKGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPNDS-- 74 (332)
T ss_dssp CCEEEEEESCTT-------S-HHHHHHHHHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCSSH--
T ss_pred ccEEEEEecCCC-------c-HHHHHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCCH--
Confidence 358999874321 1 12333445566778889999888765444322 22222 46 99999976532
Q ss_pred ccchHHHHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 133 GLYYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 133 p~~~~~~~~li~~al~~~~~g~~~PVLGICl 163 (278)
. .....++.+.+.+ +|+..+.+
T Consensus 75 -~---~~~~~~~~~~~~~-----iPvV~~~~ 96 (332)
T 2rjo_A 75 -A---DARVIVEACSKAG-----AYVTTIWN 96 (332)
T ss_dssp -H---HHHHHHHHHHHHT-----CEEEEESC
T ss_pred -H---HHHHHHHHHHHCC-----CeEEEECC
Confidence 1 1224556666667 88876654
No 115
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=64.84 E-value=47 Score=28.72 Aligned_cols=82 Identities=9% Similarity=0.001 Sum_probs=48.5
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHH----hc-ccCCEEEEcCCCCCCc
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFE----KL-ELVNGVLYTGGWAKDG 133 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~----~l-~~iDGlIl~GG~~~~p 133 (278)
....||++..... + .....+.....+.+++.|..+++...+.+.+...+ ++ ..+||||+.+... +.
T Consensus 67 ~~~~Ig~i~~~~~-------~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~-~~ 137 (344)
T 3kjx_A 67 RVNLVAVIIPSLS-------N-MVFPEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEH-SE 137 (344)
T ss_dssp CCSEEEEEESCSS-------S-SSHHHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCC-CH
T ss_pred CCCEEEEEeCCCC-------c-HHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCC-CH
Confidence 3468999874321 1 12344455666777788999887766554433222 22 4699999987543 11
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCcEEEE
Q 023716 134 LYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (278)
Q Consensus 134 ~~~~~~~~li~~al~~~~~g~~~PVLGI 161 (278)
..++.+.+.+ +|+.-+
T Consensus 138 -------~~~~~l~~~~-----iPvV~i 153 (344)
T 3kjx_A 138 -------AARAMLDAAG-----IPVVEI 153 (344)
T ss_dssp -------HHHHHHHHCS-----SCEEEE
T ss_pred -------HHHHHHHhCC-----CCEEEE
Confidence 2444445556 887766
No 116
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=64.77 E-value=45 Score=28.01 Aligned_cols=83 Identities=13% Similarity=0.169 Sum_probs=48.0
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCCCCCCcc
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGWAKDGL 134 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~~~~p~ 134 (278)
..+|||+..... + ....-+.....+.+++.|..+++.....+.+. +..+. ..+||||+.+... .
T Consensus 16 s~~Igvi~~~~~-------~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~-- 84 (289)
T 2fep_A 16 TTTVGVIIPDIS-------S-IFYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNI-T-- 84 (289)
T ss_dssp CCEEEEEESCTT-------S-HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCC-C--
T ss_pred CCeEEEEeCCCC-------C-chHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCC-C--
Confidence 458999874211 1 12333445566778889999887765544322 22222 5799999987532 1
Q ss_pred chHHHHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 135 YYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 135 ~~~~~~~li~~al~~~~~g~~~PVLGICl 163 (278)
...++.+.+.+ +|+..+.+
T Consensus 85 -----~~~~~~l~~~~-----iPvV~~~~ 103 (289)
T 2fep_A 85 -----DEHVAEFKRSP-----VPIVLAAS 103 (289)
T ss_dssp -----HHHHHHHHHSS-----SCEEEESC
T ss_pred -----HHHHHHHHhcC-----CCEEEEcc
Confidence 12344444556 77776644
No 117
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=64.77 E-value=11 Score=34.98 Aligned_cols=76 Identities=16% Similarity=0.197 Sum_probs=40.2
Q ss_pred CCCcEEEEeCCCCCC--CCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCC-CChhhHH----HhcccCCEEEEcCCCC
Q 023716 58 NYRPVIGIVTHPGDG--ASGRLNNATNASYIAASYVKFVESAGARVIPLIYN-EPEDVLF----EKLELVNGVLYTGGWA 130 (278)
Q Consensus 58 ~~rPvIGIl~~~~~~--~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~-~~~~~l~----~~l~~iDGlIl~GG~~ 130 (278)
..||.|+|++--..- ....+..+.-.+--......++++.|+.++....- ++.+.+. +.++.+|-||.+||-.
T Consensus 179 ~~~prv~IistGdEl~~~g~~~~~G~i~dsN~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlVittGG~s 258 (419)
T 2fts_A 179 NKFPVVAVMSTGNELLNPEDDLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLNALNEGISRADVIITSGGVS 258 (419)
T ss_dssp ECCCCEEEEEECTTEECTTSCCCTTCEECCHHHHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHHHHCSEEEEESCCS
T ss_pred cCCCEEEEEEechhccCCCCCCCCCcEecCchHHHHHHHHHCCCEEEEEeecCCCHHHHHHHHHHHHhcCCEEEEcCCCc
Confidence 468999997643210 00000011111111122446788899987654322 2334443 3445689999999987
Q ss_pred CCc
Q 023716 131 KDG 133 (278)
Q Consensus 131 ~~p 133 (278)
..+
T Consensus 259 ~g~ 261 (419)
T 2fts_A 259 MGE 261 (419)
T ss_dssp SSC
T ss_pred CCC
Confidence 543
No 118
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=64.50 E-value=5 Score=33.16 Aligned_cols=71 Identities=13% Similarity=0.141 Sum_probs=37.2
Q ss_pred CCCCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHH---cCCeEEEEeC-CCChhhHH----Hhcc--cCCEEEE
Q 023716 56 KLNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVES---AGARVIPLIY-NEPEDVLF----EKLE--LVNGVLY 125 (278)
Q Consensus 56 ~~~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~---~Ga~~v~i~~-~~~~~~l~----~~l~--~iDGlIl 125 (278)
.+..+|.++|++--..-..|... +.+. ....++|++ .|+.++.... .++.+.+. +.++ .+|-||.
T Consensus 10 ~v~~~~rv~IistGdEl~~g~~~-D~n~----~~L~~~L~~~~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVIt 84 (189)
T 1jlj_A 10 NHDHQIRVGVLTVSDSCFRNLAE-DRSG----INLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELNLILT 84 (189)
T ss_dssp ---CCCEEEEEEECHHHHTTSSC-CHHH----HHHHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred cccCCCEEEEEEECCccCCCccc-chHH----HHHHHHHhchhcCCcEEEEEEEeCCCHHHHHHHHHHHhhcCCCCEEEE
Confidence 34567999998753211112111 1111 223456776 7988764322 22334443 3344 6899999
Q ss_pred cCCCCC
Q 023716 126 TGGWAK 131 (278)
Q Consensus 126 ~GG~~~ 131 (278)
+||-..
T Consensus 85 tGGtg~ 90 (189)
T 1jlj_A 85 TGGTGF 90 (189)
T ss_dssp ESCCSS
T ss_pred cCCCCC
Confidence 999765
No 119
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=64.37 E-value=4.9 Score=32.47 Aligned_cols=42 Identities=14% Similarity=0.257 Sum_probs=27.2
Q ss_pred HHHHHHHcCCeEEEEeCC-CChhhHHHhc------ccCCEEEEcCCCCC
Q 023716 90 YVKFVESAGARVIPLIYN-EPEDVLFEKL------ELVNGVLYTGGWAK 131 (278)
Q Consensus 90 yv~~le~~Ga~~v~i~~~-~~~~~l~~~l------~~iDGlIl~GG~~~ 131 (278)
..++|++.|+.++....- ++.+.+.+.+ +.+|-||.+||-..
T Consensus 45 L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~g~ 93 (178)
T 3iwt_A 45 IKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGY 93 (178)
T ss_dssp HHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSS
T ss_pred HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCccc
Confidence 446889999988654322 2334443322 45899999999764
No 120
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=64.29 E-value=31 Score=29.65 Aligned_cols=83 Identities=13% Similarity=0.085 Sum_probs=46.3
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHc-CCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCCCCCCc
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA-GARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGWAKDG 133 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~-Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~~~~p 133 (278)
..+||++... .. .....+.....+.+++. |..+++.....+.+. +..++ .++||||+.+...
T Consensus 6 ~~~Igvi~~~-~~--------~~~~~~~~gi~~~a~~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~--- 73 (325)
T 2x7x_A 6 HFRIGVAQCS-DD--------SWRHKMNDEILREAMFYNGVSVEIRSAGDDNSKQAEDVHYFMDEGVDLLIISANEA--- 73 (325)
T ss_dssp CCEEEEEESC-CS--------HHHHHHHHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSH---
T ss_pred CeEEEEEecC-CC--------HHHHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCH---
Confidence 4689998643 11 11233344555666677 888887765444322 22222 5799999986432
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCcEEEEe
Q 023716 134 LYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (278)
Q Consensus 134 ~~~~~~~~li~~al~~~~~g~~~PVLGIC 162 (278)
......++.+.+.+ +|+..+.
T Consensus 74 ---~~~~~~~~~~~~~~-----iPvV~~~ 94 (325)
T 2x7x_A 74 ---APMTPIVEEAYQKG-----IPVILVD 94 (325)
T ss_dssp ---HHHHHHHHHHHHTT-----CCEEEES
T ss_pred ---HHHHHHHHHHHHCC-----CeEEEeC
Confidence 11123455555556 7876654
No 121
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=64.10 E-value=4.1 Score=33.26 Aligned_cols=68 Identities=19% Similarity=0.250 Sum_probs=35.7
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHH---HcCCeEEEEeCCCChhhHH----Hhcc--cCCEEEEcCCC
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVE---SAGARVIPLIYNEPEDVLF----EKLE--LVNGVLYTGGW 129 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le---~~Ga~~v~i~~~~~~~~l~----~~l~--~iDGlIl~GG~ 129 (278)
.+|.++|++--.....|... +.+..+ ..++++ +.|+.+......++.+.+. +.++ .+|-||.+||-
T Consensus 4 ~~~rv~IistGdE~~~G~i~-Dsn~~~----l~~~l~~l~~~G~~v~~~iv~Dd~~~I~~~l~~~~~~~~~DlVittGG~ 78 (178)
T 2pbq_A 4 KKAVIGVVTISDRASKGIYE-DISGKA----IIDYLKDVIITPFEVEYRVIPDERDLIEKTLIELADEKGCSLILTTGGT 78 (178)
T ss_dssp -CCEEEEEEECHHHHHTSSC-CHHHHH----HHHHHHHHBCSCCEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred CCCEEEEEEeCCcCCCCCee-cchHHH----HHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 46889998753211112221 111222 234555 7899773222223444443 3444 68999999997
Q ss_pred CC
Q 023716 130 AK 131 (278)
Q Consensus 130 ~~ 131 (278)
..
T Consensus 79 g~ 80 (178)
T 2pbq_A 79 GP 80 (178)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 122
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=63.87 E-value=28 Score=29.25 Aligned_cols=86 Identities=14% Similarity=0.102 Sum_probs=48.7
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCCh---hhHHHhc--ccCCEEEEcCCCCCCc
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE---DVLFEKL--ELVNGVLYTGGWAKDG 133 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~---~~l~~~l--~~iDGlIl~GG~~~~p 133 (278)
...+|||+....... + ....-+.....+.+++.|..+++...+.+. ..+.+.+ ..+||||+.+....+
T Consensus 7 ~s~~Igvv~~~~~~~-----~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~- 79 (288)
T 3gv0_A 7 KTNVIALVLSVDEEL-----M-GFTSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIEPND- 79 (288)
T ss_dssp CCCEEEEECBCCCCS-----S-CHHHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCTTC-
T ss_pred CCCEEEEEecCCccc-----c-HHHHHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCCCCc-
Confidence 346899987542210 0 123344455666777789988877654332 2233333 579999998643211
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 134 LYYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 134 ~~~~~~~~li~~al~~~~~g~~~PVLGICl 163 (278)
..++++.+.+ +|+.-+.+
T Consensus 80 -------~~~~~l~~~~-----iPvV~i~~ 97 (288)
T 3gv0_A 80 -------PRVRFMTERN-----MPFVTHGR 97 (288)
T ss_dssp -------HHHHHHHHTT-----CCEEEESC
T ss_pred -------HHHHHHhhCC-----CCEEEECC
Confidence 2344444556 77766543
No 123
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=63.76 E-value=40 Score=28.56 Aligned_cols=83 Identities=11% Similarity=0.059 Sum_probs=46.1
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCCCCCCccc
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGWAKDGLY 135 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~~~~p~~ 135 (278)
.+||++..... .....-+.....+.+++.|..+++.....+.+. +..+. .++||||+.+.... ..
T Consensus 3 ~~Ig~i~~~~~--------~~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~--~~ 72 (306)
T 2vk2_A 3 LTVGFSQVGSE--------SGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVAT--GW 72 (306)
T ss_dssp CEEEEEECCCC--------SHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSSS--SC
T ss_pred eEEEEEeCCCC--------CHHHHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh--hH
Confidence 47899875421 112223344556677888999887765444332 22222 47999999875431 11
Q ss_pred hHHHHHHHHHHHHhcCCCCCCcEEEEe
Q 023716 136 YAIVEKVFKKILEKNDAGDHFPLYAHC 162 (278)
Q Consensus 136 ~~~~~~li~~al~~~~~g~~~PVLGIC 162 (278)
...++.+.+.+ +|+.-+.
T Consensus 73 ----~~~~~~~~~~~-----iPvV~~~ 90 (306)
T 2vk2_A 73 ----EPVLKEAKDAE-----IPVFLLD 90 (306)
T ss_dssp ----HHHHHHHHHTT-----CCEEEES
T ss_pred ----HHHHHHHHHCC-----CCEEEec
Confidence 12344444556 7776553
No 124
>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=63.14 E-value=2.7 Score=33.91 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=29.9
Q ss_pred ccCCEEEEcCCCCCC--ccchHHHHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 118 ELVNGVLYTGGWAKD--GLYYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 118 ~~iDGlIl~GG~~~~--p~~~~~~~~li~~al~~~~~g~~~PVLGICl 163 (278)
.++|-|+|.||-+.. +.-.+..+.++++.++.+ ..|.|||.
T Consensus 83 ~~~D~vVllGGLAMPk~~v~~e~v~~li~ki~~~~-----~kiiGvCF 125 (157)
T 2r47_A 83 GNVDVLVLLGGLSMPGIGSDIEDVKKLVEDALEEG-----GELMGLCY 125 (157)
T ss_dssp CCEEEEEEEGGGGSTTTSCCHHHHHHHHHHHEEEE-----EEEEEEEE
T ss_pred CCCCEEEEeccccCCCCCCCHHHHHHHHHHhhcCC-----CCEEEEEh
Confidence 468999999997642 222345668888887666 78999994
No 125
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=62.00 E-value=32 Score=28.47 Aligned_cols=82 Identities=13% Similarity=0.108 Sum_probs=47.8
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCCCCCCccc
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGWAKDGLY 135 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~~~~p~~ 135 (278)
.+||++..... + ....-+.....+.+++.|..+++.....+.+. +..+. .++||+|+.+... +
T Consensus 4 ~~Ig~i~~~~~-------~-~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~-~--- 71 (275)
T 3d8u_A 4 YSIALIIPSLF-------E-KACAHFLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGSEH-S--- 71 (275)
T ss_dssp CEEEEEESCSS-------C-HHHHHHHHHHHHHHHHTSCEECCEECTTCHHHHHHHHHHHHTSCCCCEEEESSCC-C---
T ss_pred eEEEEEeCCCc-------c-ccHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHhcCCCEEEEeCCCC-C---
Confidence 57999874311 1 12333445566778889998887765544332 22222 5799999987543 1
Q ss_pred hHHHHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 136 YAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 136 ~~~~~~li~~al~~~~~g~~~PVLGICl 163 (278)
...++.+.+.+ +|+.-+.+
T Consensus 72 ----~~~~~~l~~~~-----iPvV~~~~ 90 (275)
T 3d8u_A 72 ----QRTHQLLEASN-----TPVLEIAE 90 (275)
T ss_dssp ----HHHHHHHHHHT-----CCEEEESS
T ss_pred ----HHHHHHHHhCC-----CCEEEEee
Confidence 12344455566 88877643
No 126
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=61.91 E-value=68 Score=26.58 Aligned_cols=83 Identities=10% Similarity=0.102 Sum_probs=48.1
Q ss_pred CcEEEEeCCC--CCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCCCCCC
Q 023716 60 RPVIGIVTHP--GDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGWAKD 132 (278)
Q Consensus 60 rPvIGIl~~~--~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~~~~ 132 (278)
..+||++... .. + ....-+.....+.+++.|..+++.....+.+. +..+. .++||||+.+... +
T Consensus 19 ~~~Ig~i~~~~~~~-------~-~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~-~ 89 (296)
T 3brq_A 19 TQTLGLVVTNTLYH-------G-IYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFL-S 89 (296)
T ss_dssp CCEEEEEECGGGCC----------CHHHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHTTCSEEEEECSSS-C
T ss_pred CceEEEEeCCcccC-------C-chHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEecCCC-C
Confidence 4689998743 11 1 12334455667778889998887765444322 22222 4799999987542 1
Q ss_pred ccchHHHHHHHHHHHH-hcCCCCCCcEEEEec
Q 023716 133 GLYYAIVEKVFKKILE-KNDAGDHFPLYAHCL 163 (278)
Q Consensus 133 p~~~~~~~~li~~al~-~~~~g~~~PVLGICl 163 (278)
. ..++.+.+ .+ +|+..+..
T Consensus 90 ~-------~~~~~l~~~~~-----iPvV~~~~ 109 (296)
T 3brq_A 90 V-------DEIDDIIDAHS-----QPIMVLNR 109 (296)
T ss_dssp H-------HHHHHHHHTCS-----SCEEEESC
T ss_pred h-------HHHHHHHhcCC-----CCEEEEcc
Confidence 1 23444444 56 88876643
No 127
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=60.56 E-value=36 Score=28.64 Aligned_cols=84 Identities=13% Similarity=0.016 Sum_probs=48.8
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCC-eEEEEeCCCChhh----HHHhc-ccCCEEEEcCCCCCCcc
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGA-RVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGWAKDGL 134 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga-~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~~~~p~ 134 (278)
.+||++..... + .....+.....+.+++.|. .+++.....+.+. +..+. .++||||+.+... .
T Consensus 3 ~~Igvi~~~~~-------~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~---~ 71 (309)
T 2fvy_A 3 TRIGVTIYKYD-------D-NFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDP---A 71 (309)
T ss_dssp EEEEEEESCTT-------S-HHHHHHHHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSG---G
T ss_pred cEEEEEeccCC-------c-HHHHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCc---c
Confidence 47898864211 1 1233445566677788897 7777665444322 22222 5799999976432 1
Q ss_pred chHHHHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 135 YYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 135 ~~~~~~~li~~al~~~~~g~~~PVLGICl 163 (278)
.....++.+.+.+ +|+..+..
T Consensus 72 ---~~~~~~~~~~~~~-----iPvV~~~~ 92 (309)
T 2fvy_A 72 ---AAGTVIEKARGQN-----VPVVFFNK 92 (309)
T ss_dssp ---GHHHHHHHHHTTT-----CCEEEESS
T ss_pred ---hhHHHHHHHHHCC-----CcEEEecC
Confidence 1123555555566 99887765
No 128
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=60.14 E-value=45 Score=29.06 Aligned_cols=81 Identities=10% Similarity=0.097 Sum_probs=47.7
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHh----c-ccCCEEEEcCCCCCCcc
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEK----L-ELVNGVLYTGGWAKDGL 134 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~----l-~~iDGlIl~GG~~~~p~ 134 (278)
..+||++..... +. ...-+.....+.+++.|..+++...+.+.+...+. + ..+||||+.+... ..
T Consensus 70 ~~~Igvi~~~~~-------~~-~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~-~~- 139 (355)
T 3e3m_A 70 SGFVGLLLPSLN-------NL-HFAQTAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRRRPEAMVLSYDGH-TE- 139 (355)
T ss_dssp -CEEEEEESCSB-------CH-HHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEECSCC-CH-
T ss_pred CCEEEEEeCCCC-------ch-HHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCC-CH-
Confidence 458999864321 11 23334455667788899999887665544332222 2 4799999987543 11
Q ss_pred chHHHHHHHHHHHHhcCCCCCCcEEEE
Q 023716 135 YYAIVEKVFKKILEKNDAGDHFPLYAH 161 (278)
Q Consensus 135 ~~~~~~~li~~al~~~~~g~~~PVLGI 161 (278)
..++.+.+.+ +|+.-+
T Consensus 140 ------~~~~~l~~~~-----iPvV~i 155 (355)
T 3e3m_A 140 ------QTIRLLQRAS-----IPIVEI 155 (355)
T ss_dssp ------HHHHHHHHCC-----SCEEEE
T ss_pred ------HHHHHHHhCC-----CCEEEE
Confidence 2344455566 888766
No 129
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=59.78 E-value=22 Score=29.53 Aligned_cols=81 Identities=14% Similarity=0.127 Sum_probs=47.5
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHH---hc--ccCCEEEEcCCCCCCcc
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFE---KL--ELVNGVLYTGGWAKDGL 134 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~---~l--~~iDGlIl~GG~~~~p~ 134 (278)
..+||++..... + ....-+.....+.+++.|..+++.....+.+...+ .+ ..+||||+.+. +
T Consensus 8 ~~~Ig~i~~~~~-------~-~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~---~-- 74 (277)
T 3e61_A 8 SKLIGLLLPDMS-------N-PFFTLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTAF---N-- 74 (277)
T ss_dssp --CEEEEESCTT-------S-HHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECGG---G--
T ss_pred CCEEEEEECCCC-------C-HHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecC---C--
Confidence 357999864321 1 12334455667788889999988876655432222 12 47999999871 1
Q ss_pred chHHHHHHHH-HHHHhcCCCCCCcEEEEec
Q 023716 135 YYAIVEKVFK-KILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 135 ~~~~~~~li~-~al~~~~~g~~~PVLGICl 163 (278)
...++ .+.+.+ +|+.-+-.
T Consensus 75 -----~~~~~~~l~~~~-----iPvV~~~~ 94 (277)
T 3e61_A 75 -----ENIIENTLTDHH-----IPFVFIDR 94 (277)
T ss_dssp -----HHHHHHHHHHC------CCEEEGGG
T ss_pred -----hHHHHHHHHcCC-----CCEEEEec
Confidence 12355 555666 88876644
No 130
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=59.17 E-value=39 Score=28.35 Aligned_cols=63 Identities=17% Similarity=0.193 Sum_probs=37.9
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCCC
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~ 129 (278)
...+||++..... + ....-+.....+.+++.|..+++...+.+.+. +..+. ..+||||+.+..
T Consensus 19 ~~~~Ig~i~~~~~-------~-~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 86 (293)
T 2iks_A 19 RTRSIGLVIPDLE-------N-TSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAIIVSTSL 86 (293)
T ss_dssp CCCEEEEEESCSC-------S-HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred CCcEEEEEeCCCc-------C-cHHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 3468999874211 1 12333445566777889999887765444332 22222 479999998754
No 131
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=58.70 E-value=67 Score=27.17 Aligned_cols=84 Identities=19% Similarity=0.124 Sum_probs=47.2
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeC-CCChhh----HHHhc-ccCCEEEEcCCCCCCc
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIY-NEPEDV----LFEKL-ELVNGVLYTGGWAKDG 133 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~-~~~~~~----l~~~l-~~iDGlIl~GG~~~~p 133 (278)
+..||++.... .+ ....+.....+.+++.|..++.... ..+.+. +..++ +++||||+.+....
T Consensus 1 ~~~Ig~i~~~~-------~~--~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~-- 69 (313)
T 2h3h_A 1 MLTIGVIGKSV-------HP--YWSQVEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPSDPT-- 69 (313)
T ss_dssp CCEEEEECSCS-------SH--HHHHHHHHHHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSSTT--
T ss_pred CeEEEEEeCCC-------cH--HHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChH--
Confidence 35789986421 11 2334445566777888998877632 223222 22222 57999999765331
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 134 LYYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 134 ~~~~~~~~li~~al~~~~~g~~~PVLGICl 163 (278)
. ....++.+.+.+ +|+..+..
T Consensus 70 ~----~~~~~~~~~~~~-----iPvV~~~~ 90 (313)
T 2h3h_A 70 A----VIPTIKKALEMG-----IPVVTLDT 90 (313)
T ss_dssp T----THHHHHHHHHTT-----CCEEEESS
T ss_pred H----HHHHHHHHHHCC-----CeEEEeCC
Confidence 1 123455555666 88876643
No 132
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=58.63 E-value=3.9 Score=32.90 Aligned_cols=68 Identities=12% Similarity=0.121 Sum_probs=34.5
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHH----HHHcCCeEEEEeC-CCChhhHH----Hhcc-cCCEEEEcCC
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKF----VESAGARVIPLIY-NEPEDVLF----EKLE-LVNGVLYTGG 128 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~----le~~Ga~~v~i~~-~~~~~~l~----~~l~-~iDGlIl~GG 128 (278)
+.|.++|++--..-..|+.. +.+..+ ..++ +++.|+.++.... .++.+.+. +.++ .+|-||.+||
T Consensus 4 m~~~v~Ii~~GdEl~~G~i~-D~n~~~----l~~~~~~~l~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~~DlVittGG 78 (167)
T 2g2c_A 4 MHIKSAIIVVSDRISTGTRE-NKALPL----LQRLMSDELQDYSYELISEVVVPEGYDTVVEAIATALKQGARFIITAGG 78 (167)
T ss_dssp CEEEEEEEEECHHHHHTSSC-CCHHHH----HHHHHCC----CEEEEEEEEEECSSHHHHHHHHHHHHHTTCSEEEEESC
T ss_pred CccEEEEEEECCcccCCcee-ccHHHH----HHHhHHhHHHHCCCEEeEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCC
Confidence 45788887653211122221 122222 3356 8889987754322 12334443 3444 4999999999
Q ss_pred CCC
Q 023716 129 WAK 131 (278)
Q Consensus 129 ~~~ 131 (278)
-..
T Consensus 79 ~g~ 81 (167)
T 2g2c_A 79 TGI 81 (167)
T ss_dssp CSS
T ss_pred CCC
Confidence 764
No 133
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=58.25 E-value=20 Score=30.01 Aligned_cols=58 Identities=5% Similarity=-0.040 Sum_probs=37.3
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHc-CCeEEEEeCCC-------------------------ChhhHH
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA-GARVIPLIYNE-------------------------PEDVLF 114 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~-Ga~~v~i~~~~-------------------------~~~~l~ 114 (278)
.++.|.+.|.. ......++..+.+.+++. |+.+..+...+ +.+.+.
T Consensus 3 kIliI~gS~r~--------~s~T~~la~~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~ 74 (242)
T 1sqs_A 3 KIFIYAGVRNH--------NSKTLEYTKRLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIK 74 (242)
T ss_dssp EEEEEECCCCT--------TCHHHHHHHHHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHH
T ss_pred eEEEEECCCCC--------CChHHHHHHHHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHH
Confidence 36777777642 123556667778888877 99887774331 122344
Q ss_pred HhcccCCEEEEc
Q 023716 115 EKLELVNGVLYT 126 (278)
Q Consensus 115 ~~l~~iDGlIl~ 126 (278)
+.+..+|+|||.
T Consensus 75 ~~l~~AD~iI~~ 86 (242)
T 1sqs_A 75 KELLESDIIIIS 86 (242)
T ss_dssp HHHHHCSEEEEE
T ss_pred HHHHHCCEEEEE
Confidence 456789999985
No 134
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=57.27 E-value=31 Score=29.31 Aligned_cols=89 Identities=12% Similarity=0.093 Sum_probs=48.8
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhh---HHHhc--ccCCEEEEcCCCCCCc
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV---LFEKL--ELVNGVLYTGGWAKDG 133 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~---l~~~l--~~iDGlIl~GG~~~~p 133 (278)
...+||++....... ...+ ....-+.....+.+++.|..+++...+.+.+. +.+.+ ..+||||+.+....+
T Consensus 21 ~~~~Igvi~~~~~~~--~~~~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~- 96 (305)
T 3huu_A 21 KTLTIGLIQKSSAPE--IRQN-PFNSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKDD- 96 (305)
T ss_dssp CCCEEEEECSCCSHH--HHTS-HHHHHHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBTTC-
T ss_pred CCCEEEEEeCCCccc--cccC-cHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcCCc-
Confidence 346899986541000 0011 12334445566777888998887654433222 12222 479999998754311
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 134 LYYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 134 ~~~~~~~~li~~al~~~~~g~~~PVLGICl 163 (278)
..++.+.+.+ +|+.-+-+
T Consensus 97 -------~~~~~l~~~~-----iPvV~i~~ 114 (305)
T 3huu_A 97 -------PIEHLLNEFK-----VPYLIVGK 114 (305)
T ss_dssp -------HHHHHHHHTT-----CCEEEESC
T ss_pred -------HHHHHHHHcC-----CCEEEECC
Confidence 2344444556 78776644
No 135
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=57.09 E-value=14 Score=31.09 Aligned_cols=82 Identities=12% Similarity=0.161 Sum_probs=50.4
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCC--ChhhHHHhcccCCEEEEcCCCCCCccch-
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE--PEDVLFEKLELVNGVLYTGGWAKDGLYY- 136 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~--~~~~l~~~l~~iDGlIl~GG~~~~p~~~- 136 (278)
+.++.|.++|..... .+....-+...+.+.+++.|..+..+..+. +.+...+.+..+|+|||. .|.|+
T Consensus 26 ~kiLiI~gsp~~~~s----~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~~aD~iv~~-----~P~y~~ 96 (218)
T 3rpe_A 26 SNVLIINAMKEFAHS----KGALNLTLTNVAADFLRESGHQVKITTVDQGYDIESEIENYLWADTIIYQ-----MPAWWM 96 (218)
T ss_dssp CCEEEEECCCCBTTB----CSHHHHHHHHHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHHHCSEEEEE-----EECBTT
T ss_pred cceEEEEeCCCcccC----CChHHHHHHHHHHHHHhhCCCEEEEEECCCccCHHHHHHHHHhCCEEEEE-----CChHhc
Confidence 358888988853210 111234456667788888999988886653 334455678899999985 23333
Q ss_pred ---HHHHHHHHHHHHhc
Q 023716 137 ---AIVEKVFKKILEKN 150 (278)
Q Consensus 137 ---~~~~~li~~al~~~ 150 (278)
...+.+++.+...+
T Consensus 97 ~~p~~lK~~iD~v~~~g 113 (218)
T 3rpe_A 97 GEPWILKKYIDEVFTDG 113 (218)
T ss_dssp BCCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHhcC
Confidence 23455666655443
No 136
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=56.99 E-value=5 Score=32.19 Aligned_cols=43 Identities=9% Similarity=0.027 Sum_probs=27.2
Q ss_pred HHHHHHHcCCeEEEEeC-CCChhhHH----Hhcc--cCCEEEEcCCCCCC
Q 023716 90 YVKFVESAGARVIPLIY-NEPEDVLF----EKLE--LVNGVLYTGGWAKD 132 (278)
Q Consensus 90 yv~~le~~Ga~~v~i~~-~~~~~~l~----~~l~--~iDGlIl~GG~~~~ 132 (278)
..++|++.|+.++.... .++.+.+. +.++ .+|-||.+||-...
T Consensus 26 l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g 75 (164)
T 2is8_A 26 IREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGTGLA 75 (164)
T ss_dssp HHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSS
T ss_pred HHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCC
Confidence 34678889997764322 22334443 3444 68999999997753
No 137
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=56.37 E-value=21 Score=28.93 Aligned_cols=45 Identities=20% Similarity=0.222 Sum_probs=32.0
Q ss_pred chhhhHHHHHHHHHHcCCeEEEEeCCCC----------------------hhhHHHhcccCCEEEEc
Q 023716 82 NASYIAASYVKFVESAGARVIPLIYNEP----------------------EDVLFEKLELVNGVLYT 126 (278)
Q Consensus 82 ~~~yi~~syv~~le~~Ga~~v~i~~~~~----------------------~~~l~~~l~~iDGlIl~ 126 (278)
....++..+.+.+++.|+.+..+..... .+.+.+.+...|+|||.
T Consensus 19 ~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ii~g 85 (211)
T 1ydg_A 19 TGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFS 85 (211)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEEEE
T ss_pred hHHHHHHHHHHHHhcCCCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHHCCEEEEE
Confidence 3566778888889889998888876542 02234456789999985
No 138
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=56.21 E-value=49 Score=28.36 Aligned_cols=84 Identities=5% Similarity=-0.105 Sum_probs=48.2
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEE-eCCCChhh----HHHhc-ccCCEEEEcCCCCCCcc
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPL-IYNEPEDV----LFEKL-ELVNGVLYTGGWAKDGL 134 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i-~~~~~~~~----l~~~l-~~iDGlIl~GG~~~~p~ 134 (278)
..||++..... + .....+.....+.+++.|..+++. +...+.+. +..++ +.+||||+.+... .
T Consensus 4 ~~Igvi~~~~~-------~-~~~~~~~~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~---~ 72 (316)
T 1tjy_A 4 ERIAFIPKLVG-------V-GFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSP---D 72 (316)
T ss_dssp CEEEEECSSSS-------S-HHHHHHHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSS---S
T ss_pred CEEEEEeCCCC-------C-hHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCH---H
Confidence 57999874321 1 123344555667788889888765 33333322 22322 5799999976432 1
Q ss_pred chHHHHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 135 YYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 135 ~~~~~~~li~~al~~~~~g~~~PVLGICl 163 (278)
.....++.+.+++ +||..+-+
T Consensus 73 ---~~~~~~~~a~~~g-----ipvV~~d~ 93 (316)
T 1tjy_A 73 ---GLCPALKRAMQRG-----VKILTWDS 93 (316)
T ss_dssp ---TTHHHHHHHHHTT-----CEEEEESS
T ss_pred ---HHHHHHHHHHHCc-----CEEEEecC
Confidence 1123566666667 88876644
No 139
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=56.14 E-value=75 Score=27.20 Aligned_cols=61 Identities=15% Similarity=-0.048 Sum_probs=35.1
Q ss_pred CCcEEEEeCCC-CCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEe--CC--CChh----hHHHhc-ccCCEEEEcC
Q 023716 59 YRPVIGIVTHP-GDGASGRLNNATNASYIAASYVKFVESAGARVIPLI--YN--EPED----VLFEKL-ELVNGVLYTG 127 (278)
Q Consensus 59 ~rPvIGIl~~~-~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~--~~--~~~~----~l~~~l-~~iDGlIl~G 127 (278)
...+||++... .. + ....-+.....+.+++.|..+.+.. .+ .+.+ .+..++ .++||||+++
T Consensus 42 ~~~~Igvi~~~~~~-------~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~ 112 (342)
T 1jx6_A 42 RPIKISVVYPGQQV-------S-DYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTL 112 (342)
T ss_dssp SCEEEEEEECCCSS-------C-CHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred CceEEEEEecCCcc-------c-HHHHHHHHHHHHHHHHcCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 44689998743 11 1 1233445566677888998876652 32 2322 122222 4799999964
No 140
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=56.01 E-value=43 Score=29.60 Aligned_cols=88 Identities=17% Similarity=0.112 Sum_probs=51.2
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChh--hH-HHh-cccCCEEEEcCCCCCCccch
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPED--VL-FEK-LELVNGVLYTGGWAKDGLYY 136 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~--~l-~~~-l~~iDGlIl~GG~~~~p~~~ 136 (278)
..|+|..+|..+.. .... +.....+++++.|..+.+.......+ .+ .+. .+.+|.||..||..
T Consensus 25 ~~i~vI~NP~sg~~------~~~~-~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGDG------ 91 (337)
T 2qv7_A 25 KRARIIYNPTSGKE------QFKR-ELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDG------ 91 (337)
T ss_dssp EEEEEEECTTSTTS------CHHH-HHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECHH------
T ss_pred ceEEEEECCCCCCC------chHH-HHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcCch------
Confidence 45888888865421 1122 23567889999998877665332211 11 222 24679999999954
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEechH
Q 023716 137 AIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (278)
Q Consensus 137 ~~~~~li~~al~~~~~g~~~PVLGIClG~ 165 (278)
+....++..++ .+...|+.+|=.|-
T Consensus 92 -Tv~~v~~~l~~---~~~~~pl~iIP~GT 116 (337)
T 2qv7_A 92 -TLNEVVNGIAE---KPNRPKLGVIPMGT 116 (337)
T ss_dssp -HHHHHHHHHTT---CSSCCEEEEEECSS
T ss_pred -HHHHHHHHHHh---CCCCCcEEEecCCc
Confidence 33344444421 12348888887663
No 141
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=55.67 E-value=2.8 Score=38.83 Aligned_cols=80 Identities=13% Similarity=0.123 Sum_probs=46.4
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHc--CCeEEEEeCCCChhh-----------------------HHHh
Q 023716 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA--GARVIPLIYNEPEDV-----------------------LFEK 116 (278)
Q Consensus 62 vIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~--Ga~~v~i~~~~~~~~-----------------------l~~~ 116 (278)
.|+|..++.+. ....+....++||++. |..+.+-+.. .+. ....
T Consensus 43 ~V~II~n~~~~---------~~~~~~~~l~~~L~~~~~gi~V~ve~~~--a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (388)
T 3afo_A 43 NVYITKKPWTP---------STREAMVEFITHLHESYPEVNVIVQPDV--AEEISQDFKSPLENDPNRPHILYTGPEQDI 111 (388)
T ss_dssp EEEEEECTTCH---------HHHHHHHHHHHHHHHHCTTCEEECCHHH--HHHHHTTCCSCGGGCTTSCEEEEECCHHHH
T ss_pred EEEEEEeCCCH---------HHHHHHHHHHHHHHHhCCCeEEEEeCch--hhhhhhhccccccccccccccccccchhhc
Confidence 69999987531 2344567788999887 7766542110 000 1122
Q ss_pred cccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCC-cEEEEech
Q 023716 117 LELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHF-PLYAHCLG 164 (278)
Q Consensus 117 l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~-PVLGIClG 164 (278)
.+.+|-||.-||.+ +.....+.....+ + ||+||-+|
T Consensus 112 ~~~~DlVIvlGGDG-------TlL~aa~~~~~~~-----vpPiLGIN~G 148 (388)
T 3afo_A 112 VNRTDLLVTLGGDG-------TILHGVSMFGNTQ-----VPPVLAFALG 148 (388)
T ss_dssp HHHCSEEEEEESHH-------HHHHHHHTTTTSC-----CCCEEEEECS
T ss_pred ccCCCEEEEEeCcH-------HHHHHHHHhcccC-----CCeEEEEECC
Confidence 34689999999954 2222222222223 6 89999887
No 142
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=55.54 E-value=29 Score=31.29 Aligned_cols=82 Identities=10% Similarity=0.091 Sum_probs=45.8
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhc-ccCCEEEEcCCCCCCccch
Q 023716 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKL-ELVNGVLYTGGWAKDGLYY 136 (278)
Q Consensus 58 ~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l-~~iDGlIl~GG~~~~p~~~ 136 (278)
....+|||+. +.. + ....-+.....+.+++.|..+++...+...+.+..+. ..+||||+.. . +
T Consensus 23 ~~s~~Igvv~-~~~-------~-~f~~~l~~gi~~~a~~~g~~~~i~~~~~~~~~i~~l~~~~vDGiIi~~--~-~---- 86 (412)
T 4fe7_A 23 TKRHRITLLF-NAN-------K-AYDRQVVEGVGEYLQASQSEWDIFIEEDFRARIDKIKDWLGDGVIADF--D-D---- 86 (412)
T ss_dssp CCCEEEEEEC-CTT-------S-HHHHHHHHHHHHHHHHHTCCEEEEECC-CC--------CCCSEEEEET--T-C----
T ss_pred CCCceEEEEe-CCc-------c-hhhHHHHHHHHHHHHhcCCCeEEEecCCccchhhhHhcCCCCEEEEec--C-C----
Confidence 3457999998 321 1 1233445566677888899888776544333333333 4699999931 1 1
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 137 AIVEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 137 ~~~~~li~~al~~~~~g~~~PVLGICl 163 (278)
..+++.+.+.+ +|+.-+.+
T Consensus 87 ---~~~~~~l~~~~-----iPvV~i~~ 105 (412)
T 4fe7_A 87 ---KQIEQALADVD-----VPIVGVGG 105 (412)
T ss_dssp ---HHHHHHHTTCC-----SCEEEEEE
T ss_pred ---hHHHHHHhhCC-----CCEEEecC
Confidence 13445444556 89887754
No 143
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=55.42 E-value=52 Score=24.49 Aligned_cols=78 Identities=8% Similarity=0.169 Sum_probs=48.2
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHH-HHHHHcCCeEEE-------EeCCCChhhHHHhcccCCEEEEcCCCCC
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYV-KFVESAGARVIP-------LIYNEPEDVLFEKLELVNGVLYTGGWAK 131 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv-~~le~~Ga~~v~-------i~~~~~~~~l~~~l~~iDGlIl~GG~~~ 131 (278)
+.+++|+..|.. --.+|+++..+ ++-++.|..+.+ +....+.++ ++..|+|||.+.-.+
T Consensus 3 ~kivaVTaCptG---------iAhTymAaeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~----I~~Ad~VIiA~d~~v 69 (106)
T 2r4q_A 3 AKILAVTACPTG---------IAHTFMAADALKEKAKELGVEIKVETNGSSGIKHKLTAQE----IEDAPAIIVAADKQV 69 (106)
T ss_dssp CCEEEEEECSCC-----------CHHHHHHHHHHHHHHHTCCEEEEEEETTEEESCCCHHH----HHHCSCEEEEESSCC
T ss_pred ceEEEEecCCCc---------HHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccCCCCHHH----HHhCCEEEEEeCCcc
Confidence 468999999853 23678777655 455678888765 222224433 457999999997665
Q ss_pred CccchHH--------------HHHHHHHHHHhc
Q 023716 132 DGLYYAI--------------VEKVFKKILEKN 150 (278)
Q Consensus 132 ~p~~~~~--------------~~~li~~al~~~ 150 (278)
+...+.. .+.+++.+++..
T Consensus 70 ~~~RF~GK~v~~~~v~~ai~~p~~~l~~a~~~~ 102 (106)
T 2r4q_A 70 EMERFKGKRVLQVPVTAGIRRPQELIEKAMNQD 102 (106)
T ss_dssp CCGGGTTSBEEEECHHHHHHCHHHHHHHHHTTC
T ss_pred CHhHcCCCeEEEeCHHHHHHCHHHHHHHHHhcc
Confidence 4433311 246777776554
No 144
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=54.94 E-value=95 Score=26.55 Aligned_cols=62 Identities=16% Similarity=0.165 Sum_probs=37.3
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCCC
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~ 129 (278)
..+||++..... + ....-+.....+.+++.|..+++...+.+.+. +..+. ..+||||+.+..
T Consensus 63 ~~~Ig~i~~~~~-------~-~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 129 (332)
T 2o20_A 63 TTTVGVILPTIT-------S-TYFAAITRGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGSS 129 (332)
T ss_dssp CCEEEEEESCTT-------C-HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECSSC
T ss_pred CCEEEEEeCCCC-------C-cHHHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 468999864211 1 12333445566777888999887765544332 22222 579999998753
No 145
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=54.86 E-value=15 Score=32.34 Aligned_cols=91 Identities=7% Similarity=-0.028 Sum_probs=52.5
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCC-------------hhhHHHhcccCCEEEEc
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP-------------EDVLFEKLELVNGVLYT 126 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~-------------~~~l~~~l~~iDGlIl~ 126 (278)
..+++|.+.+..+ .....++..+.+.+++.|+.+.++....- ...+.+.+..+|||||.
T Consensus 59 mKILiI~GS~R~~--------S~T~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~a 130 (279)
T 2fzv_A 59 VRILLLYGSLRAR--------SFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWC 130 (279)
T ss_dssp CEEEEEESCCSSS--------CHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEE
T ss_pred CEEEEEEeCCCCC--------CHHHHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEE
Confidence 3477777776431 23445566677888888998887754321 13355567789999995
Q ss_pred CCCCCCccchH----HHHHHHHHHHHh---cCCCCCCcEEEEec
Q 023716 127 GGWAKDGLYYA----IVEKVFKKILEK---NDAGDHFPLYAHCL 163 (278)
Q Consensus 127 GG~~~~p~~~~----~~~~li~~al~~---~~~g~~~PVLGICl 163 (278)
.|.|+. ..+.++++.... ...-.++|+.-|+-
T Consensus 131 -----SP~Yn~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~t 169 (279)
T 2fzv_A 131 -----SPERHGQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQV 169 (279)
T ss_dssp -----EEEETTEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEE
T ss_pred -----cCccccCcCHHHHHHHHHHhhhcccccccCCCEEEEEEE
Confidence 455543 345555554321 01123467655543
No 146
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=54.81 E-value=15 Score=29.88 Aligned_cols=74 Identities=15% Similarity=0.173 Sum_probs=42.6
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCC--------------hhhHHHhcccCCEEEE
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP--------------EDVLFEKLELVNGVLY 125 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~--------------~~~l~~~l~~iDGlIl 125 (278)
+.++.|.+++..+ .....++..+.+.++ .|+.+..+....- ...+.+.+..+|+|||
T Consensus 3 ~kilii~gS~r~~--------s~t~~la~~~~~~~~-~~~~v~~~dl~~lp~~~~~~~~~~~~~~~~~~~~i~~AD~iV~ 73 (192)
T 3fvw_A 3 KRILFIVGSFSEG--------SFNRQLAKKAETIIG-DRAQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQEADAIWI 73 (192)
T ss_dssp CEEEEEESCCSTT--------CHHHHHHHHHHHHHT-TSSEEEECCCSSCCCCCGGGTTSCCHHHHHHHHHHHHCSEEEE
T ss_pred CEEEEEEcCCCCC--------CHHHHHHHHHHHhcC-CCCEEEEEeCccCCCCCcccccCCcHHHHHHHHHHHhCCEEEE
Confidence 4577888887521 123345555666665 6777776643211 1235567788999998
Q ss_pred cCCCCCCccch----HHHHHHHHHHH
Q 023716 126 TGGWAKDGLYY----AIVEKVFKKIL 147 (278)
Q Consensus 126 ~GG~~~~p~~~----~~~~~li~~al 147 (278)
. .|.|+ ...+.++++..
T Consensus 74 ~-----sP~y~~~~p~~lK~~iD~~~ 94 (192)
T 3fvw_A 74 F-----SPVYNYAIPGPVKNLLDWLS 94 (192)
T ss_dssp E-----CCCBTTBCCHHHHHHHHHHT
T ss_pred E-----CcccccCCCHHHHHHHHHhh
Confidence 5 33333 33455666554
No 147
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=54.66 E-value=73 Score=26.51 Aligned_cols=82 Identities=13% Similarity=0.130 Sum_probs=46.9
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhH----HHhc-ccCCEEEEcCCCCCCcc
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVL----FEKL-ELVNGVLYTGGWAKDGL 134 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l----~~~l-~~iDGlIl~GG~~~~p~ 134 (278)
..+||++..... + ....-+.....+.+++.|..+++...+.+.+.. ..+. .++||||+.+... +
T Consensus 8 ~~~Igvi~~~~~-------~-~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~-~-- 76 (285)
T 3c3k_A 8 TGMLLVMVSNIA-------N-PFCAAVVKGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSGKMVDGVITMDALS-E-- 76 (285)
T ss_dssp CCEEEEEESCTT-------S-HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHTTCCSEEEECCCGG-G--
T ss_pred CCEEEEEeCCCC-------C-chHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCC-C--
Confidence 458999874311 1 123334455667788899998877655443322 2222 4699999986532 1
Q ss_pred chHHHHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 135 YYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 135 ~~~~~~~li~~al~~~~~g~~~PVLGICl 163 (278)
. ..++.+. .+ +|+..+.+
T Consensus 77 --~---~~~~~l~-~~-----iPvV~~~~ 94 (285)
T 3c3k_A 77 --L---PELQNII-GA-----FPWVQCAE 94 (285)
T ss_dssp --H---HHHHHHH-TT-----SSEEEESS
T ss_pred --h---HHHHHHh-cC-----CCEEEEcc
Confidence 1 2333333 55 88877654
No 148
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=54.15 E-value=6.7 Score=31.48 Aligned_cols=68 Identities=19% Similarity=0.213 Sum_probs=36.0
Q ss_pred CCcEEEEeCCCCCC-CCCCCCCCCchhhhHHHHHHHHHHc-----CCeEEEEeC-CCChhhHHH----hc--ccCCEEEE
Q 023716 59 YRPVIGIVTHPGDG-ASGRLNNATNASYIAASYVKFVESA-----GARVIPLIY-NEPEDVLFE----KL--ELVNGVLY 125 (278)
Q Consensus 59 ~rPvIGIl~~~~~~-~~~~~~~~~~~~yi~~syv~~le~~-----Ga~~v~i~~-~~~~~~l~~----~l--~~iDGlIl 125 (278)
.+|.++|++- ++. ..|... +.+..++ .+.+++. |+.++.... .++.+.+.+ .+ +.+|-||.
T Consensus 4 ~~~rv~Iist-Gde~~~G~~~-d~n~~~l----~~~l~~~~~~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVit 77 (167)
T 1uuy_A 4 PEYKVAILTV-SDTVSAGAGP-DRSGPRA----VSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILT 77 (167)
T ss_dssp CSEEEEEEEE-CHHHHTTSSC-CSHHHHH----HHHHHHTTTTTTSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCcEEEEEEE-CCcccCCCCc-cCcHHHH----HHHHHhccccCCCcEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 5688999874 321 112111 1112232 3456656 887764322 233444433 33 26899999
Q ss_pred cCCCCCC
Q 023716 126 TGGWAKD 132 (278)
Q Consensus 126 ~GG~~~~ 132 (278)
+||-...
T Consensus 78 tGG~g~g 84 (167)
T 1uuy_A 78 LGGTGFT 84 (167)
T ss_dssp ESCCSSS
T ss_pred CCCCCCC
Confidence 9997753
No 149
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=53.88 E-value=39 Score=26.85 Aligned_cols=45 Identities=16% Similarity=0.092 Sum_probs=30.5
Q ss_pred chhhhHHHHHHHHHHcCCeEEEEeCCCCh----------------hhHHHhcccCCEEEEc
Q 023716 82 NASYIAASYVKFVESAGARVIPLIYNEPE----------------DVLFEKLELVNGVLYT 126 (278)
Q Consensus 82 ~~~yi~~syv~~le~~Ga~~v~i~~~~~~----------------~~l~~~l~~iDGlIl~ 126 (278)
....++..+.+.+++.|..+..+...... +...+.+...|+|||.
T Consensus 18 ~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~g 78 (200)
T 2a5l_A 18 ATAEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALG 78 (200)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEE
T ss_pred hHHHHHHHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCCEEEEE
Confidence 35667777888888899988877654310 0113456789999984
No 150
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=53.82 E-value=38 Score=28.41 Aligned_cols=82 Identities=16% Similarity=0.042 Sum_probs=48.6
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCC--Chhh----HHHhc-ccCCEEEEcCCCCCC
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE--PEDV----LFEKL-ELVNGVLYTGGWAKD 132 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~--~~~~----l~~~l-~~iDGlIl~GG~~~~ 132 (278)
...||++..... .....-+.....+.+++.|..+++...+. +.+. +..++ .++||||+.+....
T Consensus 5 ~~~Igvi~~~~~--------~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~- 75 (304)
T 3o1i_D 5 DEKICAIYPHLK--------DSYWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPH- 75 (304)
T ss_dssp CCEEEEEESCSC--------SHHHHHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTT-
T ss_pred CcEEEEEeCCCC--------CcHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh-
Confidence 358999865321 11234455667778888999998887664 4322 22222 47999999875431
Q ss_pred ccchHHHHHHHHHHHHhcCCCCCCcEEEE
Q 023716 133 GLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (278)
Q Consensus 133 p~~~~~~~~li~~al~~~~~g~~~PVLGI 161 (278)
.. ...++.+. ++ +|+.-+
T Consensus 76 -~~----~~~~~~~~-~~-----iPvV~~ 93 (304)
T 3o1i_D 76 -AY----EHNLKSWV-GN-----TPVFAT 93 (304)
T ss_dssp -SS----TTTHHHHT-TT-----SCEEEC
T ss_pred -HH----HHHHHHHc-CC-----CCEEEe
Confidence 00 11344444 56 898877
No 151
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=53.39 E-value=33 Score=28.95 Aligned_cols=88 Identities=11% Similarity=0.165 Sum_probs=47.4
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhh---HHHhc--ccCCEEEEcCCCCCCc
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV---LFEKL--ELVNGVLYTGGWAKDG 133 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~---l~~~l--~~iDGlIl~GG~~~~p 133 (278)
...+|||+....... ...+ ....-+.....+.+++.|..+++...+.+.+. +.+.+ ..+||||+.+....+
T Consensus 6 ~s~~Igvi~~~~~~~--~~~~-~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~- 81 (295)
T 3hcw_A 6 QTYKIGLVLKGSEEP--IRLN-PFYINVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKEND- 81 (295)
T ss_dssp CSCEEEEECSCCCHH--HHSC-HHHHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTTC-
T ss_pred CCcEEEEEeecCCcc--cccC-hHHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcccCh-
Confidence 346899987421100 0011 12333445566777888998887654433221 22222 579999998754311
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCcEEEEe
Q 023716 134 LYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (278)
Q Consensus 134 ~~~~~~~~li~~al~~~~~g~~~PVLGIC 162 (278)
..++.+.+.+ +|+.-+.
T Consensus 82 -------~~~~~l~~~~-----iPvV~i~ 98 (295)
T 3hcw_A 82 -------PIKQMLIDES-----MPFIVIG 98 (295)
T ss_dssp -------HHHHHHHHTT-----CCEEEES
T ss_pred -------HHHHHHHhCC-----CCEEEEC
Confidence 2344444556 7776554
No 152
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=53.16 E-value=62 Score=27.17 Aligned_cols=87 Identities=14% Similarity=0.112 Sum_probs=49.1
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCC--ChhhHHHhc--ccCCEEEEcCCCCCCccc
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE--PEDVLFEKL--ELVNGVLYTGGWAKDGLY 135 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~--~~~~l~~~l--~~iDGlIl~GG~~~~p~~ 135 (278)
..+||++...... .+.+ ....-+.....+.+++.|..+++...+. ....+.+.+ ..+||||+.+....+
T Consensus 6 s~~Igvi~~~~~~---~~~~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~--- 78 (294)
T 3qk7_A 6 TDAIALAYPSRPR---VLNN-STFLEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPED--- 78 (294)
T ss_dssp CCEEEEEEESCSG---GGSC-HHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSC---
T ss_pred cceEEEEecCCCc---cccC-hhHHHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCCh---
Confidence 4689998752110 0111 1233344556677888999988876542 122333333 379999998765421
Q ss_pred hHHHHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 136 YAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 136 ~~~~~~li~~al~~~~~g~~~PVLGICl 163 (278)
..++.+.+.+ +|+.-+.+
T Consensus 79 -----~~~~~l~~~~-----iPvV~~~~ 96 (294)
T 3qk7_A 79 -----FRLQYLQKQN-----FPFLALGR 96 (294)
T ss_dssp -----HHHHHHHHTT-----CCEEEESC
T ss_pred -----HHHHHHHhCC-----CCEEEECC
Confidence 2344444556 77766554
No 153
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=52.00 E-value=74 Score=26.53 Aligned_cols=85 Identities=9% Similarity=0.037 Sum_probs=47.4
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEe-CCCChhh----HHHhc-ccCCEEEEcCCCCCCc
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLI-YNEPEDV----LFEKL-ELVNGVLYTGGWAKDG 133 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~-~~~~~~~----l~~~l-~~iDGlIl~GG~~~~p 133 (278)
..+||++..... + ....-+.....+.+++.|..++.+. ...+.+. +..++ +++||||+.+...
T Consensus 4 ~~~Ig~i~~~~~-------~-~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~--- 72 (303)
T 3d02_A 4 EKTVVNISKVDG-------M-PWFNRMGEGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPNDA--- 72 (303)
T ss_dssp CEEEEEECSCSS-------C-HHHHHHHHHHHHHHHHTTEEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSCH---
T ss_pred ceEEEEEeccCC-------C-hHHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecCCh---
Confidence 357999874321 1 1233345566677888898877553 2233322 22222 5799999976521
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 134 LYYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 134 ~~~~~~~~li~~al~~~~~g~~~PVLGICl 163 (278)
......++.+.+.+ +|+.-+.+
T Consensus 73 ---~~~~~~~~~~~~~~-----ipvV~~~~ 94 (303)
T 3d02_A 73 ---NVLEPVFKKARDAG-----IVVLTNES 94 (303)
T ss_dssp ---HHHHHHHHHHHHTT-----CEEEEESC
T ss_pred ---HHHHHHHHHHHHCC-----CeEEEEec
Confidence 12234556565666 78766654
No 154
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=51.94 E-value=71 Score=23.75 Aligned_cols=78 Identities=14% Similarity=0.252 Sum_probs=48.7
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHH-HHHHHcCCeEEE-------EeCCCChhhHHHhcccCCEEEEcCCCCC
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYV-KFVESAGARVIP-------LIYNEPEDVLFEKLELVNGVLYTGGWAK 131 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv-~~le~~Ga~~v~-------i~~~~~~~~l~~~l~~iDGlIl~GG~~~ 131 (278)
+.+++|+..|. +--.+|+++..+ ++-++.|..+.+ +....+.++ ++..|+|||.+.-.+
T Consensus 3 ~kivaVTaCpt---------GiAhTymAaeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~----I~~Ad~VIiA~d~~v 69 (106)
T 2r48_A 3 AKLLAITSCPN---------GIAHTYMAAENLQKAADRLGVSIKVETQGGIGVENKLTEEE----IREADAIIIAADRSV 69 (106)
T ss_dssp CEEEEEEECSS---------CSHHHHHHHHHHHHHHHHHTCEEEEEEEETTEEESCCCHHH----HHHCSEEEEEESSCC
T ss_pred ceEEEEecCCC---------cHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccCCCCHHH----HHhCCEEEEEeCCcc
Confidence 36899999984 234678877655 455678888765 222224433 457999999997665
Q ss_pred CccchHH--------------HHHHHHHHHHhc
Q 023716 132 DGLYYAI--------------VEKVFKKILEKN 150 (278)
Q Consensus 132 ~p~~~~~--------------~~~li~~al~~~ 150 (278)
+...+.. .+.+++.+++..
T Consensus 70 ~~~RF~GK~v~~~~v~~ai~~p~~~l~~a~~~a 102 (106)
T 2r48_A 70 NKDRFIGKKLLSVGVQDGIRKPEELIQKALNGD 102 (106)
T ss_dssp CCGGGTTSBEEEECHHHHHHCHHHHHHHHHHCC
T ss_pred CHhHcCCCeEEEeCHHHHHHCHHHHHHHHHhcc
Confidence 4433311 246777776644
No 155
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=51.84 E-value=61 Score=27.14 Aligned_cols=84 Identities=8% Similarity=-0.087 Sum_probs=46.5
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEe--CCCChhh----HHHhc-ccCCEEEEcCCCCCCc
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLI--YNEPEDV----LFEKL-ELVNGVLYTGGWAKDG 133 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~--~~~~~~~----l~~~l-~~iDGlIl~GG~~~~p 133 (278)
.+||++..... + ....-+.....+.+++.|..+++.. ...+.+. +..++ .++||||+.+... +
T Consensus 2 ~~Igvi~~~~~-------~-~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~-~- 71 (288)
T 1gud_A 2 AEYAVVLKTLS-------N-PFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSS-V- 71 (288)
T ss_dssp CEEEEEESCSS-------S-HHHHHHHHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSS-S-
T ss_pred cEEEEEeCCCC-------c-hHHHHHHHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh-H-
Confidence 46888763211 1 1233344556677788899888765 3333322 22222 4699999976532 1
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 134 LYYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 134 ~~~~~~~~li~~al~~~~~g~~~PVLGICl 163 (278)
.. ...++.+.+.+ +|+.-+.+
T Consensus 72 ~~----~~~~~~~~~~~-----iPvV~~~~ 92 (288)
T 1gud_A 72 NL----VMPVARAWKKG-----IYLVNLDE 92 (288)
T ss_dssp TT----HHHHHHHHHTT-----CEEEEESS
T ss_pred HH----HHHHHHHHHCC-----CeEEEECC
Confidence 11 12345555566 88876644
No 156
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=51.55 E-value=56 Score=27.87 Aligned_cols=83 Identities=16% Similarity=0.206 Sum_probs=50.1
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCChhhH-HHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechH
Q 023716 87 AASYVKFVESAGARVIPLIYNEPEDVL-FEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (278)
Q Consensus 87 ~~syv~~le~~Ga~~v~i~~~~~~~~l-~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~ 165 (278)
...+.+.|+..|..+..+-.++....+ ++.|+++|.||+-|-.. ......+....++..++++ .+++||=-|.
T Consensus 34 ~~~i~~~L~~~gf~V~~~t~dd~~~~~~~~~L~~~DvvV~~~~~~-~~~l~~~~~~al~~~V~~G-----gG~vgiH~a~ 107 (252)
T 1t0b_A 34 HTVIASYLAEAGFDAATAVLDEPEHGLTDEVLDRCDVLVWWGHIA-HDEVKDEVVERVHRRVLEG-----MGLIVLHSGH 107 (252)
T ss_dssp HHHHHHHHHHTTCEEEEEESSSGGGGCCHHHHHTCSEEEEECSSC-GGGSCHHHHHHHHHHHHTT-----CEEEEEGGGG
T ss_pred HHHHHHHHhhCCcEEEEEeccCccccCCHhHHhcCCEEEEecCCC-CCcCCHHHHHHHHHHHHcC-----CCEEEEcccC
Confidence 344578888999988876644332211 24688999999943111 0112234445666677777 8999996552
Q ss_pred --HHHHHHHhCc
Q 023716 166 --ELLTMIISKD 175 (278)
Q Consensus 166 --QlL~~~~Gg~ 175 (278)
+.....+||.
T Consensus 108 ~~~~y~~llGg~ 119 (252)
T 1t0b_A 108 FSKIFKKLMGTT 119 (252)
T ss_dssp GSHHHHHHHCSC
T ss_pred CcHHHHhhhCCc
Confidence 3344456665
No 157
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=51.27 E-value=43 Score=28.19 Aligned_cols=63 Identities=16% Similarity=0.187 Sum_probs=39.7
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhc-----ccCCEEEEcCC
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKL-----ELVNGVLYTGG 128 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l-----~~iDGlIl~GG 128 (278)
...+||++...... .....-+.....+.+++.|..+++...+.+.+...+.+ ..+||||+.+.
T Consensus 12 ~s~~Igvi~~~~~~-------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 79 (301)
T 3miz_A 12 RSNTFGIITDYVST-------TPYSVDIVRGIQDWANANGKTILIANTGGSSEREVEIWKMFQSHRIDGVLYVTM 79 (301)
T ss_dssp CCCEEEEEESSTTT-------CCSCHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CCCEEEEEeCCCcC-------cccHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEecC
Confidence 34689998754321 11221445667788899999998887655443222222 47999999764
No 158
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=50.88 E-value=23 Score=29.00 Aligned_cols=92 Identities=16% Similarity=0.186 Sum_probs=51.2
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHH----HHHHc--CCeEEEEeCCC-------------Ch---hhHHH
Q 023716 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVK----FVESA--GARVIPLIYNE-------------PE---DVLFE 115 (278)
Q Consensus 58 ~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~----~le~~--Ga~~v~i~~~~-------------~~---~~l~~ 115 (278)
..|.|++|.+.++.+. ...-+...+++ .+++. |+.+..+.... .. +.+.+
T Consensus 10 ~~~~il~i~GS~r~~S--------~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~~l~~~~~~~~~~~~~~~~~~~~ 81 (191)
T 3k1y_A 10 HMRTLAVISAGLSTPS--------STRQIADSISEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLEEITS 81 (191)
T ss_dssp CSEEEEEEECCCSSSC--------HHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCHHHHTTTTSSSCCCHHHHHHHH
T ss_pred hhceEEEEECCCCCCC--------HHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhCCCcccChhhcCCCCHHHHHHHH
Confidence 4578999999886432 23444555666 55555 67777763321 11 23445
Q ss_pred hcccCCEEEEcCCCCCCccchH----HHHHHHHHHHHhcCCCCCCcEEEEech
Q 023716 116 KLELVNGVLYTGGWAKDGLYYA----IVEKVFKKILEKNDAGDHFPLYAHCLG 164 (278)
Q Consensus 116 ~l~~iDGlIl~GG~~~~p~~~~----~~~~li~~al~~~~~g~~~PVLGIClG 164 (278)
.+..+|+|||. .|.|+. ..+.++++... ..=.++|+.-++.|
T Consensus 82 ~i~~AD~ivi~-----sP~Y~~~~~~~lK~~iD~~~~--~~l~gK~~~~v~t~ 127 (191)
T 3k1y_A 82 ALSASDGLVVA-----TPVFKASYTGLFKMFFDILDT--DALTGMPTIIAATA 127 (191)
T ss_dssp HHHHCSEEEEE-----EECBTTBSCHHHHHHHHHSCT--TTTTTCEEEEEEEE
T ss_pred HHHHCCEEEEE-----cCccCCcCcHHHHHHHHHhhh--hhcCCCEEEEEEeC
Confidence 66789999985 344443 33444444321 12234777766654
No 159
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=50.52 E-value=43 Score=29.56 Aligned_cols=87 Identities=17% Similarity=0.098 Sum_probs=51.0
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChh--hH-HHh-cccCCEEEEcCCCCCCccch
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPED--VL-FEK-LELVNGVLYTGGWAKDGLYY 136 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~--~l-~~~-l~~iDGlIl~GG~~~~p~~~ 136 (278)
..|+|..+|..+. . . +.....+++++.|..+.+.......+ ++ .+. .+.+|.||..||..
T Consensus 30 ~~~~vi~Np~sg~--------~-~-~~~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GGDG------ 93 (332)
T 2bon_A 30 PASLLILNGKSTD--------N-L-PLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDG------ 93 (332)
T ss_dssp CCEEEEECSSSTT--------C-H-HHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEESHH------
T ss_pred ceEEEEECCCCCC--------C-c-hHHHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEccch------
Confidence 3488888886432 1 1 23467789999999877665332211 11 111 24689999999954
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEechH
Q 023716 137 AIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (278)
Q Consensus 137 ~~~~~li~~al~~~~~g~~~PVLGIClG~ 165 (278)
+...+++...+.. .+...|+..|=.|-
T Consensus 94 -Tl~~v~~~l~~~~-~~~~~plgiiP~Gt 120 (332)
T 2bon_A 94 -TINEVSTALIQCE-GDDIPALGILPLGT 120 (332)
T ss_dssp -HHHHHHHHHHHCC-SSCCCEEEEEECSS
T ss_pred -HHHHHHHHHhhcc-cCCCCeEEEecCcC
Confidence 4445555555321 23348877775554
No 160
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=50.49 E-value=59 Score=25.26 Aligned_cols=45 Identities=11% Similarity=0.118 Sum_probs=32.3
Q ss_pred chhhhHHHHHHHHHHcCCeEEEEeCCCC-hhhHHHhcccCCEEEEc
Q 023716 82 NASYIAASYVKFVESAGARVIPLIYNEP-EDVLFEKLELVNGVLYT 126 (278)
Q Consensus 82 ~~~yi~~syv~~le~~Ga~~v~i~~~~~-~~~l~~~l~~iDGlIl~ 126 (278)
+...++....+.++..|..+.++..... .+++...+...|+|||-
T Consensus 13 nT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~G 58 (161)
T 3hly_A 13 YSDRLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSSARGIVLG 58 (161)
T ss_dssp THHHHHHHHHHHHHHTTCCEEEEETTTCCHHHHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhCCEEEEE
Confidence 4677788888889889998877776542 34444445678998884
No 161
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=49.40 E-value=46 Score=27.67 Aligned_cols=64 Identities=9% Similarity=-0.062 Sum_probs=36.3
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCC--CChhh----HHHhc-ccCCEEEEcCCC
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN--EPEDV----LFEKL-ELVNGVLYTGGW 129 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~--~~~~~----l~~~l-~~iDGlIl~GG~ 129 (278)
..+||++...... .+ ....-+.....+.+++.|..+++...+ .+.+. +..+. .++||||+.+..
T Consensus 5 ~~~Ig~v~~~~~~-----~~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 75 (289)
T 3brs_A 5 QYYMICIPKVLDD-----SS-DFWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAAD 75 (289)
T ss_dssp CCEEEEECSCCCS-----SS-HHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSC
T ss_pred CcEEEEEeCCCCC-----Cc-hHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 4589998743210 01 123334455667778889988876542 23221 22222 579999998754
No 162
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=48.38 E-value=55 Score=25.49 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=32.5
Q ss_pred chhhhHHHHHHHHHHcCCeEEEEeCCCC--hhhHHHhcccCCEEEEc
Q 023716 82 NASYIAASYVKFVESAGARVIPLIYNEP--EDVLFEKLELVNGVLYT 126 (278)
Q Consensus 82 ~~~yi~~syv~~le~~Ga~~v~i~~~~~--~~~l~~~l~~iDGlIl~ 126 (278)
+..-++....+.+++.|..+.++..... .+++...+...|+|||-
T Consensus 17 nT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~d~ii~G 63 (159)
T 3fni_A 17 YSDRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVGRCTGLVIG 63 (159)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHHhCCEEEEE
Confidence 3566777788888889998888776543 44455556678988884
No 163
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A
Probab=48.31 E-value=15 Score=33.97 Aligned_cols=42 Identities=26% Similarity=0.107 Sum_probs=23.9
Q ss_pred HHHHHHHcCCeEEEEeCC-CChhh----HHHhcccCCEEEEcCCCCC
Q 023716 90 YVKFVESAGARVIPLIYN-EPEDV----LFEKLELVNGVLYTGGWAK 131 (278)
Q Consensus 90 yv~~le~~Ga~~v~i~~~-~~~~~----l~~~l~~iDGlIl~GG~~~ 131 (278)
...++++.|+.++....- ++.+. +.+.++.+|-||.+||-..
T Consensus 216 L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlvittGG~s~ 262 (396)
T 1wu2_A 216 LQGLVEKFFGEPILYGVLPDDESIIKETLEKAKNECDIVLITGGSAF 262 (396)
T ss_dssp HHHHHHHTTCEEEEEEEECSCHHHHTTHHHHHHHCSEEEECC-----
T ss_pred HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHhhCCCEEEEeCCCCC
Confidence 446788899988754322 23333 4445567899999999764
No 164
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=47.43 E-value=54 Score=28.13 Aligned_cols=63 Identities=16% Similarity=0.196 Sum_probs=37.0
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCCC
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~ 129 (278)
...+||++..... + ....-+.....+.+++.|..+++...+.+.+. +..+. ..+||||+.+..
T Consensus 59 ~~~~Ig~i~~~~~-------~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 126 (332)
T 2hsg_A 59 KTTTVGVIIPDIS-------N-IFYAELARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSGN 126 (332)
T ss_dssp -CCEEEEEEC--C-------C-SHHHHHHHHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHTSCCSSCCEEECCSS
T ss_pred CCCEEEEEeCCCC-------C-cHHHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3468999874321 1 12333445566777888999887765433322 22222 469999998754
No 165
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=45.74 E-value=58 Score=28.34 Aligned_cols=61 Identities=18% Similarity=0.086 Sum_probs=36.1
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCCC
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~ 129 (278)
..||++..... + ....-+.....+.+++.|..+++.....+.+. +..+. ..+||||+.+..
T Consensus 67 ~~Igvi~~~~~-------~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 132 (348)
T 3bil_A 67 NTIGVIVPSLI-------N-HYFAAMVTEIQSTASKAGLATIITNSNEDATTMSGSLEFLTSHGVDGIICVPNE 132 (348)
T ss_dssp -CEEEEESCSS-------S-HHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSCEEECCCG
T ss_pred CEEEEEeCCCC-------C-cHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 57999864211 1 12333445566777889999888765544332 22222 479999998753
No 166
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=45.65 E-value=16 Score=31.62 Aligned_cols=54 Identities=11% Similarity=0.027 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHh--cCCCCCCcEEEEec
Q 023716 86 IAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEK--NDAGDHFPLYAHCL 163 (278)
Q Consensus 86 i~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~--~~~g~~~PVLGICl 163 (278)
+.....+++++.|..+. .+.+|-||.-||.. +.....+..... + +|++||=.
T Consensus 16 ~~~~l~~~l~~~g~~v~--------------~~~~D~vv~lGGDG-------T~l~aa~~~~~~~~~-----~PilGIn~ 69 (272)
T 2i2c_A 16 LRLNMIAGFGEYDMEYD--------------DVEPEIVISIGGDG-------TFLSAFHQYEERLDE-----IAFIGIHT 69 (272)
T ss_dssp HHHHHHHHHTTSSCEEC--------------SSSCSEEEEEESHH-------HHHHHHHHTGGGTTT-----CEEEEEES
T ss_pred HHHHHHHHHHHCCCEeC--------------CCCCCEEEEEcCcH-------HHHHHHHHHhhcCCC-----CCEEEEeC
Confidence 34567788888998761 24689999999954 322333333332 4 99999987
Q ss_pred hH
Q 023716 164 GF 165 (278)
Q Consensus 164 G~ 165 (278)
|.
T Consensus 70 G~ 71 (272)
T 2i2c_A 70 GH 71 (272)
T ss_dssp SS
T ss_pred CC
Confidence 63
No 167
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=43.97 E-value=1.3e+02 Score=24.65 Aligned_cols=62 Identities=16% Similarity=0.048 Sum_probs=36.9
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCCC
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~ 129 (278)
..+||++..... + ....-+.....+.+++.|..+++.....+.+. +..+. .++||||+.+..
T Consensus 7 ~~~Ig~i~~~~~-------~-~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 73 (289)
T 1dbq_A 7 TKSIGLLATSSE-------A-AYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSE 73 (289)
T ss_dssp -CEEEEEESCTT-------S-HHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CCEEEEEeCCCC-------C-hHHHHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHhCCCCEEEEEecc
Confidence 358999874221 1 12233445566777888998887765544432 22222 479999998754
No 168
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=43.53 E-value=50 Score=27.61 Aligned_cols=62 Identities=18% Similarity=0.119 Sum_probs=34.6
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEE-eCCCChh----hHHHhc-ccCCEEEEcCCC
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPL-IYNEPED----VLFEKL-ELVNGVLYTGGW 129 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i-~~~~~~~----~l~~~l-~~iDGlIl~GG~ 129 (278)
..+||++..... + ....-+.....+.+++.|..+++. ....+.+ .+..+. ..+||||+.+..
T Consensus 8 ~~~Ig~i~~~~~-------~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 75 (290)
T 3clk_A 8 SNVIAAVVSSVR-------T-NFAQQILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIERPVMGILLLSIA 75 (290)
T ss_dssp CCEEEEECCCCS-------S-SHHHHHHHHHHHHHHTTTCEEEEEC----------CHHHHHHSSCCSEEEEESCC
T ss_pred CCEEEEEeCCCC-------C-hHHHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 358999874211 1 123344555667778889988776 4322221 233322 579999997754
No 169
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=43.30 E-value=32 Score=28.62 Aligned_cols=43 Identities=7% Similarity=0.055 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCCeEEEEeCCCC-----hhhHHHhcccCCEEEEcCCCC
Q 023716 88 ASYVKFVESAGARVIPLIYNEP-----EDVLFEKLELVNGVLYTGGWA 130 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~-----~~~l~~~l~~iDGlIl~GG~~ 130 (278)
..+.+.|++.|+.++.+|.-.. .+.....++.+|.|||+...+
T Consensus 14 ~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~l~~~d~viftS~~a 61 (240)
T 3mw8_A 14 AAMASALDALAIPYLVEPLLSVEAAAVTQAQLDELSRADILIFISTSA 61 (240)
T ss_dssp HHHHHHHHHHTCCEEECCSCEEEECCCCHHHHHHHTTCSEEEECSHHH
T ss_pred HHHHHHHHHCCCcEEEeCcEEEeccccHHHHHHHhcCCCEEEEECHHH
Confidence 4688999999999887765431 122223467899999996644
No 170
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=41.55 E-value=84 Score=24.64 Aligned_cols=64 Identities=16% Similarity=0.169 Sum_probs=42.7
Q ss_pred HHHHHHHHHcCCeEEEEeCCC--------Chh-----hHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHh-cCCC
Q 023716 88 ASYVKFVESAGARVIPLIYNE--------PED-----VLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEK-NDAG 153 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~--------~~~-----~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~-~~~g 153 (278)
..+.++|+..|.+++..|... ..| ++.+....+|.++|..|.. .+ ..+++++.++ +
T Consensus 64 ~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vLvSgD~---DF----~plv~~lr~~~G--- 133 (165)
T 2qip_A 64 RQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVILVSGDG---DF----SLLVERIQQRYN--- 133 (165)
T ss_dssp HHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEEECCCG---GG----HHHHHHHHHHHC---
T ss_pred HHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCEEEEEECCh---hH----HHHHHHHHHHcC---
Confidence 568899999999988666421 111 1223346799988877643 22 3577777776 8
Q ss_pred CCCcEEEEec
Q 023716 154 DHFPLYAHCL 163 (278)
Q Consensus 154 ~~~PVLGICl 163 (278)
+.|.+++.
T Consensus 134 --~~V~v~g~ 141 (165)
T 2qip_A 134 --KKVTVYGV 141 (165)
T ss_dssp --CEEEEEEC
T ss_pred --cEEEEEeC
Confidence 89999884
No 171
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=41.01 E-value=56 Score=27.39 Aligned_cols=63 Identities=10% Similarity=0.056 Sum_probs=38.4
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChh---hHHHhc-ccCCEEEEcCCCC
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPED---VLFEKL-ELVNGVLYTGGWA 130 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~---~l~~~l-~~iDGlIl~GG~~ 130 (278)
...+|||+. ... + ....-+.....+.+++.|..+++...+.+.+ .+..+. .++||||+.+...
T Consensus 11 ~~~~Igvi~-~~~-------~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 77 (289)
T 3k9c_A 11 SSRLLGVVF-ELQ-------Q-PFHGDLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMRERCEAAILLGTRF 77 (289)
T ss_dssp --CEEEEEE-ETT-------C-HHHHHHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETCCC
T ss_pred CCCEEEEEE-ecC-------C-chHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 346899988 321 1 1234445667778888999988876554322 222222 4799999987543
No 172
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=40.86 E-value=52 Score=28.23 Aligned_cols=39 Identities=8% Similarity=0.040 Sum_probs=27.5
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCC
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN 107 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~ 107 (278)
.++.|.++|... .....+...+++.+++.|..+..+...
T Consensus 4 kiLiI~gSpr~~--------s~t~~la~~~~~~l~~~g~eV~~~dL~ 42 (273)
T 1d4a_A 4 RALIVLAHSERT--------SFNYAMKEAAAAALKKKGWEVVESDLY 42 (273)
T ss_dssp EEEEEECCSCTT--------SHHHHHHHHHHHHHHHTTCEEEEEETT
T ss_pred EEEEEEeCCCCc--------cHHHHHHHHHHHHHHhCCCeEEEEEcc
Confidence 477888888531 234556777888888899988887543
No 173
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=40.84 E-value=24 Score=28.92 Aligned_cols=56 Identities=13% Similarity=0.107 Sum_probs=37.6
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCC-------CChhhHHHhcccCCEEEEc
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN-------EPEDVLFEKLELVNGVLYT 126 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~-------~~~~~l~~~l~~iDGlIl~ 126 (278)
.++.|.++|... .+-+...+++.+++.|..+..+... .+.+...+.+..+|+|||.
T Consensus 3 kiLiI~gsp~~~----------~s~l~~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~ 65 (192)
T 3f2v_A 3 KTLIILAHPNIS----------QSTVHKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQ 65 (192)
T ss_dssp CEEEEECCTTGG----------GCSHHHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEE
T ss_pred EEEEEEeCCCcc----------HHHHHHHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEE
Confidence 477788887521 1345677888888889877777432 2334455677899999985
No 174
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=40.68 E-value=1.1e+02 Score=25.36 Aligned_cols=87 Identities=8% Similarity=-0.046 Sum_probs=49.0
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHc-CCeEEEEeC---CCChhh----HHHhc-ccCCEEEEcCCC
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA-GARVIPLIY---NEPEDV----LFEKL-ELVNGVLYTGGW 129 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~-Ga~~v~i~~---~~~~~~----l~~~l-~~iDGlIl~GG~ 129 (278)
...+||++...... ......+.....+.+++. |..+.+... ..+.+. +..+. .++||||+.+..
T Consensus 7 ~~~~Igvi~~~~~~-------~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~ 79 (304)
T 3gbv_A 7 KKYTFACLLPKHLE-------GEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTV 79 (304)
T ss_dssp CCEEEEEEEECCCT-------TSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSS
T ss_pred CcceEEEEecCCCC-------chHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 34689987654200 112444556666777777 777776542 122222 22222 579999998753
Q ss_pred CCCccchHHHHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 130 AKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 130 ~~~p~~~~~~~~li~~al~~~~~g~~~PVLGICl 163 (278)
. . .....++.+.+.+ +|+.-+.+
T Consensus 80 ~---~---~~~~~~~~~~~~~-----iPvV~~~~ 102 (304)
T 3gbv_A 80 P---Q---YTKGFTDALNELG-----IPYIYIDS 102 (304)
T ss_dssp G---G---GTHHHHHHHHHHT-----CCEEEESS
T ss_pred h---H---HHHHHHHHHHHCC-----CeEEEEeC
Confidence 2 1 1124566666667 88876654
No 175
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=40.65 E-value=92 Score=24.47 Aligned_cols=40 Identities=5% Similarity=0.023 Sum_probs=25.4
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcC--CeEEEEeCC
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAG--ARVIPLIYN 107 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~G--a~~v~i~~~ 107 (278)
.++.|.++|... ......++..+.+.+++.| ..+..+...
T Consensus 3 kilii~~S~~~~-------~s~t~~la~~~~~~l~~~g~~~~v~~~dl~ 44 (201)
T 1t5b_A 3 KVLVLKSSILAG-------YSQSGQLTDYFIEQWREKHVADEITVRDLA 44 (201)
T ss_dssp EEEEEECCSSGG-------GCHHHHHHHHHHHHHHHHCTTCEEEEEETT
T ss_pred eEEEEEeCCCCC-------CChHHHHHHHHHHHHHHhCCCCeEEEEecc
Confidence 366777776420 1235556677788888876 787777654
No 176
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=40.50 E-value=36 Score=28.48 Aligned_cols=39 Identities=13% Similarity=0.042 Sum_probs=28.7
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCC
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN 107 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~ 107 (278)
.++.|.++|... ....-+...+++.+++.|..+.++...
T Consensus 3 kiLiI~gspr~~--------S~t~~l~~~~~~~l~~~g~ev~~~dL~ 41 (228)
T 3tem_A 3 KVLIVYAHQEPK--------SFNGSLKNVAVDELSRQGCTVTVSDLY 41 (228)
T ss_dssp EEEEEECCSCTT--------SHHHHHHHHHHHHHHHHTCEEEEEETT
T ss_pred EEEEEEeCCCCC--------CHHHHHHHHHHHHHHHCCCEEEEEEhh
Confidence 477888888632 235567778889998889998888553
No 177
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=40.36 E-value=50 Score=26.83 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=26.5
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHc--CCeEEEEeC
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA--GARVIPLIY 106 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~--Ga~~v~i~~ 106 (278)
.++.|.++|... .....-+...+++.+++. |..+..+..
T Consensus 3 kiLii~gSpr~~-------~s~t~~l~~~~~~~~~~~~~g~~v~~~dL 43 (212)
T 3r6w_A 3 RILAVHASPRGE-------RSQSRRLAEVFLAAYREAHPQARVARREV 43 (212)
T ss_dssp CEEEEECCSCST-------TCHHHHHHHHHHHHHHHHCTTCCEEEEES
T ss_pred EEEEEEeCCCCC-------CCHHHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 477888887531 123455677788888877 888887754
No 178
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=40.18 E-value=26 Score=26.31 Aligned_cols=57 Identities=12% Similarity=0.096 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEe
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIC 162 (278)
..+.+.+...|....- +.++.+|.+|+.-|.-. .+-.-.+.-++.|.+.+ +|++||=
T Consensus 18 ~~L~~~l~~~~f~~~~-----------~~I~~~~~vIvL~G~~t--~~s~wv~~EI~~A~~~g-----kpIigV~ 74 (111)
T 1eiw_A 18 RVFLERLEQSGLEWRP-----------ATPEDADAVIVLAGLWG--TRRDEILGAVDLARKSS-----KPIITVR 74 (111)
T ss_dssp HHHHHHHHHHCSCEEE-----------CCSSSCSEEEEEGGGTT--TSHHHHHHHHHHHTTTT-----CCEEEEC
T ss_pred HHHHHHHhCCCCeeec-----------CccccCCEEEEEeCCCc--CCChHHHHHHHHHHHcC-----CCEEEEE
Confidence 4556666555665553 35788999997766542 12223345566777777 9999983
No 179
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=39.92 E-value=1.1e+02 Score=22.96 Aligned_cols=61 Identities=11% Similarity=0.060 Sum_probs=41.2
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHH-HHHHHcCCeEEEE-------eCCCChhhHHHhcccCCEEEEcCCC
Q 023716 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYV-KFVESAGARVIPL-------IYNEPEDVLFEKLELVNGVLYTGGW 129 (278)
Q Consensus 58 ~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv-~~le~~Ga~~v~i-------~~~~~~~~l~~~l~~iDGlIl~GG~ 129 (278)
|.+.+++|++.|.. -..+|+++.-+ ++-++.|..+.+- ...-+.++ ++.+|+|||.+.-
T Consensus 4 m~mkIvaVTaCptG---------iAHTyMAAeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~----I~~Ad~VIiA~d~ 70 (111)
T 2kyr_A 4 MSKKLIALCACPMG---------LAHTFMAAQALEEAAVEAGYEVKIETQGADGIQNRLTAQD----IAEATIIIHSVAV 70 (111)
T ss_dssp CCCEEEEEEEESSC---------HHHHHHHHHHHHHHHHHTSSEEEEEEEETTEEESCCCHHH----HHHCSEEEEEESS
T ss_pred ccccEEEEEcCCCc---------HHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcCCCCCHHH----HHhCCEEEEEeCC
Confidence 44679999999842 34678777655 4567789887762 22234443 4569999999876
Q ss_pred CC
Q 023716 130 AK 131 (278)
Q Consensus 130 ~~ 131 (278)
.+
T Consensus 71 ~v 72 (111)
T 2kyr_A 71 TP 72 (111)
T ss_dssp CC
T ss_pred Cc
Confidence 65
No 180
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=39.71 E-value=22 Score=28.49 Aligned_cols=89 Identities=12% Similarity=0.110 Sum_probs=44.6
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCC---------------hhhHHHhcccCCEEEE
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP---------------EDVLFEKLELVNGVLY 125 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~---------------~~~l~~~l~~iDGlIl 125 (278)
.++.|...+... .....++..+.+.++ .|+.+..+....- .+.+.+.+..+|+|||
T Consensus 8 kilii~gS~r~~--------g~t~~la~~i~~~l~-~g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~ 78 (193)
T 1rtt_A 8 KVLGISGSLRSG--------SYNSAALQEAIGLVP-PGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLF 78 (193)
T ss_dssp EEEEEESCCSTT--------CHHHHHHHHHHTTCC-TTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEE
T ss_pred eEEEEECCCCCC--------ChHHHHHHHHHHhcc-CCCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEE
Confidence 366777766421 123334444444444 5777777654320 1233456778999999
Q ss_pred cCCCCCCccch----HHHHHHHHHHHHhc-CCCCCCcEEEEec
Q 023716 126 TGGWAKDGLYY----AIVEKVFKKILEKN-DAGDHFPLYAHCL 163 (278)
Q Consensus 126 ~GG~~~~p~~~----~~~~~li~~al~~~-~~g~~~PVLGICl 163 (278)
. .|.|+ ...+.++++..... ..-.++|+.-+|-
T Consensus 79 ~-----sP~y~~~~p~~lK~~iD~~~~~~~~~l~gK~~~~~~t 116 (193)
T 1rtt_A 79 A-----TPEYNYSMAGVLKNAIDWASRPPEQPFSGKPAAILGA 116 (193)
T ss_dssp E-----CCEETTEECHHHHHHHHHHTCSSSCTTTTCEEEEEEE
T ss_pred E-----ccccccCcCHHHHHHHHHhccccCcccCCCeEEEEEe
Confidence 5 23333 33455555543210 0122367665553
No 181
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=39.65 E-value=1.6e+02 Score=25.09 Aligned_cols=67 Identities=9% Similarity=0.032 Sum_probs=42.4
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCChhh---HHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEe
Q 023716 87 AASYVKFVESAGARVIPLIYNEPEDV---LFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (278)
Q Consensus 87 ~~syv~~le~~Ga~~v~i~~~~~~~~---l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIC 162 (278)
...+.+..+..|..++........+. +..+..++|+++++.. .......+.+...+.+.+ +|++|.-
T Consensus 158 ~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~l~~~~d~i~~~~d----~~~~~~~~~i~~~~~~~~-----iPv~~~~ 227 (302)
T 3lkv_A 158 MELLKLSAAKHGIKLVEATALKSADVQSATQAIAEKSDVIYALID----NTVASAIEGMIVAANQAK-----TPVFGAA 227 (302)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHHTTCSEEEECSC----HHHHHTHHHHHHHHHHTT-----CCEEESS
T ss_pred HHHHHHHHHHcCCEEEEEecCChHHHHHHHHhccCCeeEEEEeCC----cchhhHHHHHHHHHhhcC-----Cceeecc
Confidence 34455677788999888876554321 2334468999998753 222333345666677777 9999854
No 182
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=39.60 E-value=31 Score=30.84 Aligned_cols=41 Identities=29% Similarity=0.378 Sum_probs=32.4
Q ss_pred EEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHH
Q 023716 122 GVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLT 169 (278)
Q Consensus 122 GlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~ 169 (278)
||+.+||.. |-.....+.+++.++..+ .-|+|+..|++=|-
T Consensus 5 gIltsGG~~--pG~Na~ir~vv~~a~~~g-----~~v~Gi~~G~~Gl~ 45 (319)
T 4a3s_A 5 GVLTSGGDS--PGMNAAVRAVVRKAIYHD-----VEVYGIYNGYAGLI 45 (319)
T ss_dssp EEEEESSCC--TTHHHHHHHHHHHHHHTT-----CEEEEECSTTHHHH
T ss_pred EEECcCCCc--HHHHHHHHHHHHHHHHCC-----CEEEEEecchHHHc
Confidence 677777765 566666778888888776 67999999998874
No 183
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=39.17 E-value=69 Score=26.05 Aligned_cols=61 Identities=15% Similarity=0.085 Sum_probs=36.5
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCCC
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~ 129 (278)
.+||++..... + ....-+.....+.+++.|..+++.....+.+. +..+. .++||+|+.+..
T Consensus 3 ~~Igvi~~~~~-------~-~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 68 (255)
T 1byk_A 3 KVVAIIVTRLD-------S-LSENLAVQTMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKRRNIDGVVLFGFT 68 (255)
T ss_dssp CEEEEEESCTT-------C-HHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHTTTCCEEEEECCT
T ss_pred CEEEEEeCCCC-------C-ccHHHHHHHHHHHHHHcCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecCc
Confidence 47899874221 1 12233445566777888999888765444332 22222 579999998753
No 184
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=38.78 E-value=41 Score=26.80 Aligned_cols=43 Identities=23% Similarity=0.169 Sum_probs=30.0
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeCCCC------------------hhhHHHhcccCCEEEEc
Q 023716 83 ASYIAASYVKFVESAGARVIPLIYNEP------------------EDVLFEKLELVNGVLYT 126 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~~~~~------------------~~~l~~~l~~iDGlIl~ 126 (278)
...++..+.+.+++.|+.+..+..... ... .+.+...|+|||.
T Consensus 17 T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~d~~~~~~-~~~l~~aD~ii~g 77 (199)
T 2zki_A 17 IVELAKEIGKGAEEAGAEVKIRRVRETLPPEFQSRIPFDKVKDIPEVT-LDDMRWADGFAIG 77 (199)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEECCCCSCGGGGTTCCGGGSTTSCBCC-HHHHHHCSEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEehhHhCChhhhhccCCCccccccccc-HHHHHhCCEEEEE
Confidence 566777788888888998887765432 112 3356779999884
No 185
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=38.22 E-value=55 Score=26.63 Aligned_cols=50 Identities=12% Similarity=0.095 Sum_probs=27.2
Q ss_pred HHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHH--hcCCCCCCcEEEEec
Q 023716 113 LFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILE--KNDAGDHFPLYAHCL 163 (278)
Q Consensus 113 l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~--~~~~g~~~PVLGICl 163 (278)
+.+.++.+||+||.-- ..+..+....+.+++++-. ....=.+||+.-++-
T Consensus 61 l~~~i~~aD~~ii~tP-eYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~ 112 (190)
T 3u7r_A 61 LKDRIEHSDAVLAITP-EYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGT 112 (190)
T ss_dssp HHHHHHTSSEEEEECC-CBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEE
T ss_pred HHHHHHhCCcEEEech-hhcccCCHHHHHHHHHhcccccCCccCCCEEEEEEe
Confidence 4567788999998621 1122233445666665521 112234589877753
No 186
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=37.28 E-value=1.5e+02 Score=25.01 Aligned_cols=66 Identities=6% Similarity=-0.028 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCCh---hhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEE
Q 023716 87 AASYVKFVESAGARVIPLIYNEPE---DVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (278)
Q Consensus 87 ~~syv~~le~~Ga~~v~i~~~~~~---~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGI 161 (278)
...|.+++++.|..+......... +.+.++++.+|+|+.+... .-.+..+.+.+..+..+ +||+|.
T Consensus 158 ~~g~~~al~~~gi~~~~~~~~~~~~~~~~~~~l~~~~dai~~~~D~----~a~g~~~~l~~~~~~~~-----i~vig~ 226 (302)
T 2qh8_A 158 MELLKLSAAKHGIKLVEATALKSADVQSATQAIAEKSDVIYALIDN----TVASAIEGMIVAANQAK-----TPVFGA 226 (302)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHGGGCSEEEECSCH----HHHTTHHHHHHHHHHTT-----CCEEES
T ss_pred HHHHHHHHHHcCCEEEEEecCChHHHHHHHHHHhccCCEEEECCcH----hHHHHHHHHHHHHHHcC-----CCEEEC
Confidence 356888999999987766443222 2234456789998886321 11222334555555555 999885
No 187
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=37.20 E-value=75 Score=26.37 Aligned_cols=61 Identities=16% Similarity=0.223 Sum_probs=37.7
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCe-EEEEeCCCChhh----HHHhc-ccCCEEEEcC
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGAR-VIPLIYNEPEDV----LFEKL-ELVNGVLYTG 127 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~-~v~i~~~~~~~~----l~~~l-~~iDGlIl~G 127 (278)
...+||++..... + ....-+.....+.+++.|.. +++.....+.+. +..+. ..+||||+.+
T Consensus 9 ~~~~Igvi~~~~~-------~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 9 KSKMIGIIIPDLN-------N-RFYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp CCCEEEEEESCTT-------S-HHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCEEEEEeCCCC-------C-hhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 4468999875321 1 12334455667788889999 776655544332 22222 4799999987
No 188
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=36.98 E-value=37 Score=28.34 Aligned_cols=63 Identities=6% Similarity=-0.074 Sum_probs=35.2
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCCh---hhHHHhc--ccCCEEEEcCC
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE---DVLFEKL--ELVNGVLYTGG 128 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~---~~l~~~l--~~iDGlIl~GG 128 (278)
...+|||+..... .+ ....-+.....+.+++.|..+++...+.+. ..+.+.+ ..+||||+.+.
T Consensus 10 ~~~~Igvi~~~~~------~~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 77 (289)
T 3g85_A 10 SKPTIALYWSSDI------SV-NIISRFLRGLQSKLAKQNYNYNVVICPYKTDCLHLEKGISKENSFDAAIIANI 77 (289)
T ss_dssp -CCEEEEEEETTS------CG-GGHHHHHHHHHHHHHHTTTCSEEEEEEECTTCGGGCGGGSTTTCCSEEEESSC
T ss_pred CCceEEEEecccc------ch-HHHHHHHHHHHHHHHHcCCeEEEEecCCCchhHHHHHHHHhccCCCEEEEecC
Confidence 4468999875211 11 123344556667788889887765432221 1122222 46999999865
No 189
>3dzv_A 4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_816404.1, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.57A {Enterococcus faecalis}
Probab=35.34 E-value=2.2e+02 Score=24.55 Aligned_cols=79 Identities=11% Similarity=-0.028 Sum_probs=51.2
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccch
Q 023716 57 LNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYY 136 (278)
Q Consensus 57 ~~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~ 136 (278)
+..+|+|==.|+.-. ...-...+-..|+.|+... .++++.+.++.+|+++|==|-. ++.+.
T Consensus 14 ~~~~Plvh~iTN~V~---------------~n~~AN~~La~GasP~M~~---~~~e~~e~~~~a~alvIn~G~l-~~~~~ 74 (273)
T 3dzv_A 14 LTTAPLIQCITNEIT---------------CESMANALLYIDAKPIMAD---DPREFPQMFQQTSALVLNLGHL-SQERE 74 (273)
T ss_dssp CCSCCEEEEECCTTT---------------HHHHHHHHHHTTCEEECCC---CGGGHHHHHTTCSEEEEECCSC-CHHHH
T ss_pred CCCCCEEEEecCcch---------------hhhHHHHHHHcCCchhhcC---CHHHHHHHHHHCCeEEEecCCC-ChHHH
Confidence 467798887776531 1233467889999998753 4677888889999999965543 33333
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEE
Q 023716 137 AIVEKVFKKILEKNDAGDHFPLY 159 (278)
Q Consensus 137 ~~~~~li~~al~~~~~g~~~PVL 159 (278)
+.....++.+.+.+ +|+.
T Consensus 75 ~~~~~a~~~a~~~~-----~PvV 92 (273)
T 3dzv_A 75 QSLLAASDYARQVN-----KLTV 92 (273)
T ss_dssp HHHHHHHHHHHHTT-----CCEE
T ss_pred HHHHHHHHHHHHcC-----CcEE
Confidence 33344555555555 7764
No 190
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=35.01 E-value=48 Score=29.61 Aligned_cols=41 Identities=27% Similarity=0.285 Sum_probs=31.2
Q ss_pred EEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHH
Q 023716 122 GVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLT 169 (278)
Q Consensus 122 GlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~ 169 (278)
||+-+||+. |-.....+.+++.++..+ .-|+||..|++=|.
T Consensus 6 ~IltsGGda--pGmNaair~vv~~a~~~g-----~~v~Gi~~G~~GL~ 46 (320)
T 1pfk_A 6 GVLTSGGDA--PGMNAAIRGVVRSALTEG-----LEVMGIYDGYLGLY 46 (320)
T ss_dssp EEEECSSCC--TTHHHHHHHHHHHHHHTT-----CEEEEESTHHHHHH
T ss_pred EEEccCCCc--hhHHHHHHHHHHHHHHCC-----CEEEEEecChHHhc
Confidence 455566654 666666788888888766 78999999999773
No 191
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=34.90 E-value=1.5e+02 Score=25.56 Aligned_cols=61 Identities=20% Similarity=0.244 Sum_probs=35.1
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCC-hhh----HHHhc-ccCCEEEEcCC
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP-EDV----LFEKL-ELVNGVLYTGG 128 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~-~~~----l~~~l-~~iDGlIl~GG 128 (278)
..+||++..... +. ....+.....+.+++.|..+++...+.+ .+. +..++ ..+||||+.+.
T Consensus 61 ~~~Igvi~~~~~-------~~-~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~~vdGiIi~~~ 127 (349)
T 1jye_A 61 SLLIGVATSSLA-------LH-APSQIVAAILSRADQLGASVVVSMVERSGVEACKTAVHNLLAQRVSGLIINYP 127 (349)
T ss_dssp -CEEEEEESCTT-------SH-HHHHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHHHTTTCSCEEEESC
T ss_pred CCEEEEEeCCCC-------cc-cHHHHHHHHHHHHHHcCCEEEEEeCCCCcHHHHHHHHHHHHHCCCCEEEEecC
Confidence 358999864211 11 1233445566777889998887765432 221 22222 46999999753
No 192
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=34.89 E-value=2.1e+02 Score=24.33 Aligned_cols=62 Identities=16% Similarity=0.048 Sum_probs=37.5
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCCC
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~ 129 (278)
..+||++..... + ....-+.....+.+++.|..+++...+.+.+. +..+. ..+||||+.+..
T Consensus 58 ~~~Igvi~~~~~-------~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 124 (340)
T 1qpz_A 58 TKSIGLLATSSE-------A-AYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSE 124 (340)
T ss_dssp CSEEEEEESCSC-------S-HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred CCEEEEEeCCCC-------C-hHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 458999874321 1 12333445566777788998887765444432 22222 479999998754
No 193
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=34.40 E-value=68 Score=25.42 Aligned_cols=42 Identities=19% Similarity=0.140 Sum_probs=29.4
Q ss_pred chhhhHHHHHHHHHH-cCCeEEEEeCCCChhhHHHhcccCCEEEEc
Q 023716 82 NASYIAASYVKFVES-AGARVIPLIYNEPEDVLFEKLELVNGVLYT 126 (278)
Q Consensus 82 ~~~yi~~syv~~le~-~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~ 126 (278)
....++....+.+++ .|..+..+...... . +.+...|+|||.
T Consensus 17 nT~~~a~~i~~~l~~~~g~~v~~~~l~~~~--~-~~l~~aD~ii~g 59 (188)
T 2ark_A 17 NTKKMAELVAEGARSLEGTEVRLKHVDEAT--K-EDVLWADGLAVG 59 (188)
T ss_dssp HHHHHHHHHHHHHHTSTTEEEEEEETTTCC--H-HHHHHCSEEEEE
T ss_pred HHHHHHHHHHHHHhhcCCCeEEEEEhhhCC--H-HHHHhCCEEEEE
Confidence 356677778888888 88888887665422 2 235678999985
No 194
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=33.90 E-value=61 Score=24.70 Aligned_cols=61 Identities=11% Similarity=0.121 Sum_probs=38.5
Q ss_pred HHHHH-HHHHHcCCeEEEEeCCCChhhHHHhc--ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhc
Q 023716 87 AASYV-KFVESAGARVIPLIYNEPEDVLFEKL--ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKN 150 (278)
Q Consensus 87 ~~syv-~~le~~Ga~~v~i~~~~~~~~l~~~l--~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~ 150 (278)
...++ .+++..|.+++-+-.+.+.+++.+.. .++|.|.++.-.. .+....+++++...+++
T Consensus 19 G~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~~d~v~lS~~~~---~~~~~~~~~i~~l~~~g 82 (137)
T 1ccw_A 19 GNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILVSSLYG---QGEIDCKGLRQKCDEAG 82 (137)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECSS---THHHHHTTHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEecCc---CcHHHHHHHHHHHHhcC
Confidence 34444 47889999999886566676665544 4789999987543 22333445555554443
No 195
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=33.60 E-value=1.7e+02 Score=26.65 Aligned_cols=77 Identities=6% Similarity=0.149 Sum_probs=42.8
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEe-CCC---ChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcE
Q 023716 83 ASYIAASYVKFVESAGARVIPLI-YNE---PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPL 158 (278)
Q Consensus 83 ~~yi~~syv~~le~~Ga~~v~i~-~~~---~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PV 158 (278)
..-++....+-+++.|..++++. ++. +..++...+.++|||+| |.+-.+...+.....++......+..++..=+
T Consensus 279 Te~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~~ivl-GspT~~~~~~p~~~~~l~~l~~~~~~~K~~~~ 357 (410)
T 4dik_A 279 VENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIF-GVSTYEAEIHPLMRFTLLEIIDKANYEKPVLV 357 (410)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEE-EECCTTSSSCHHHHHHHHHHHHHCCCCCEEEE
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhCCeEEE-EeCCcCCcCCHHHHHHHHHHHhcccCCCEEEE
Confidence 55567778889999999887653 222 23455556778999998 22222222222333444444444434433334
Q ss_pred EE
Q 023716 159 YA 160 (278)
Q Consensus 159 LG 160 (278)
||
T Consensus 358 FG 359 (410)
T 4dik_A 358 FG 359 (410)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 196
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=33.14 E-value=50 Score=29.51 Aligned_cols=41 Identities=27% Similarity=0.361 Sum_probs=31.1
Q ss_pred EEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEEEechHHHHH
Q 023716 122 GVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLT 169 (278)
Q Consensus 122 GlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLGIClG~QlL~ 169 (278)
||+-+||+. |-.....+.+++.++..+ .-|+||-.|++=|.
T Consensus 5 ~IltsGGda--pGmNaair~vv~~a~~~g-----~~v~Gi~~G~~GL~ 45 (319)
T 1zxx_A 5 GILTSGGDA--PGMNAAVRAVTRVAIANG-----LEVFGIRYGFAGLV 45 (319)
T ss_dssp EEEECSSCC--TTHHHHHHHHHHHHHTTT-----CEEEEECTHHHHHH
T ss_pred EEEccCCCc--hhHHHHHHHHHHHHHHCC-----CEEEEEccChHHHc
Confidence 455666654 666666778888888766 78999999999774
No 197
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=32.64 E-value=1.8e+02 Score=22.73 Aligned_cols=85 Identities=16% Similarity=0.106 Sum_probs=51.8
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHH-HHHHHcCCeEEEEeCCCChhhHHHhc--ccCCEEEEcCCCCCCccc
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYV-KFVESAGARVIPLIYNEPEDVLFEKL--ELVNGVLYTGGWAKDGLY 135 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv-~~le~~Ga~~v~i~~~~~~~~l~~~l--~~iDGlIl~GG~~~~p~~ 135 (278)
.+|.|=+.+-+++. .-+...++ .+++..|..++.+..+.+.+++.+.. .++|.|.++.-.. .+
T Consensus 17 ~~~~vlla~~~gd~-----------HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~diV~lS~~~~---~~ 82 (161)
T 2yxb_A 17 RRYKVLVAKMGLDG-----------HDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIGVSILNG---AH 82 (161)
T ss_dssp CSCEEEEEEESSSS-----------CCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEEEEESSS---CH
T ss_pred CCCEEEEEeCCCCc-----------cHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEeech---hh
Confidence 45666665554431 11334444 47788999999998777777776655 3789999886533 33
Q ss_pred hHHHHHHHHHHHHhcCCCCCCcEE
Q 023716 136 YAIVEKVFKKILEKNDAGDHFPLY 159 (278)
Q Consensus 136 ~~~~~~li~~al~~~~~g~~~PVL 159 (278)
....+++++...+.+. +..||+
T Consensus 83 ~~~~~~~i~~L~~~g~--~~i~v~ 104 (161)
T 2yxb_A 83 LHLMKRLMAKLRELGA--DDIPVV 104 (161)
T ss_dssp HHHHHHHHHHHHHTTC--TTSCEE
T ss_pred HHHHHHHHHHHHhcCC--CCCEEE
Confidence 4445566666555331 236654
No 198
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=32.57 E-value=59 Score=26.10 Aligned_cols=41 Identities=7% Similarity=0.085 Sum_probs=27.4
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcC--CeEEEEeCC
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAG--ARVIPLIYN 107 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~G--a~~v~i~~~ 107 (278)
.++.|.++|.... ......++..+++.+++.| ..+..+...
T Consensus 3 kilii~gS~r~~~------~s~t~~la~~~~~~~~~~g~~~~v~~~dL~ 45 (208)
T 2hpv_A 3 KLLVVKAHPLTKE------ESRSVRALETFLASYRETNPSDEIEILDVY 45 (208)
T ss_dssp EEEEEECCSSCTT------TCHHHHHHHHHHHHHHHHCTTSEEEEEETT
T ss_pred eEEEEEecCCCCC------CCHHHHHHHHHHHHHHHhCCCCeEEEeeCC
Confidence 3677888775211 1235566777888888887 888877654
No 199
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=31.67 E-value=99 Score=26.74 Aligned_cols=62 Identities=19% Similarity=0.177 Sum_probs=38.6
Q ss_pred HHHHHHHHcCCeEEEEeCC-------CChhhHHHhcc--cCCEEEEcCCCCCCccch--HHHHHHHHHHHHhc
Q 023716 89 SYVKFVESAGARVIPLIYN-------EPEDVLFEKLE--LVNGVLYTGGWAKDGLYY--AIVEKVFKKILEKN 150 (278)
Q Consensus 89 syv~~le~~Ga~~v~i~~~-------~~~~~l~~~l~--~iDGlIl~GG~~~~p~~~--~~~~~li~~al~~~ 150 (278)
++...++..|++++.++.+ .+.+.+++.++ +...|+++....-.+..+ ...+++.+.+.+.+
T Consensus 121 ~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~ 193 (391)
T 3dzz_A 121 MFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQ 193 (391)
T ss_dssp HHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCC
Confidence 5777888999999998874 35667777664 466677654321111111 23456777776655
No 200
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=31.64 E-value=1.1e+02 Score=26.87 Aligned_cols=61 Identities=13% Similarity=0.086 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCeEEEEeCCCChhhHHHhcc-----cCCEEEEcCCCCCCccchHHHHHHHHHHHHhc
Q 023716 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLE-----LVNGVLYTGGWAKDGLYYAIVEKVFKKILEKN 150 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~-----~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~ 150 (278)
.++...++..|++++.++.+ +.+.+++.++ +...|+++......+.... .+++.+.+.+.+
T Consensus 143 ~~~~~~~~~~g~~~~~v~~~-d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~-l~~i~~l~~~~~ 208 (401)
T 2bwn_A 143 ASMIEGIKRNAGPKRIFRHN-DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGP-IKEICDIAEEFG 208 (401)
T ss_dssp HHHHHHHHHSCCCEEEECTT-CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCC-HHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCeEEEEcCC-CHHHHHHHHHhhccCCceEEEEecCcCCCCCcCC-HHHHHHHHHHcC
Confidence 34566778899999999976 5666776664 4556777654321111111 345666666555
No 201
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=31.54 E-value=53 Score=26.54 Aligned_cols=72 Identities=11% Similarity=0.197 Sum_probs=41.3
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCC----------------------hhhHHHhccc
Q 023716 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP----------------------EDVLFEKLEL 119 (278)
Q Consensus 62 vIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~----------------------~~~l~~~l~~ 119 (278)
++.|.++|..+ ....-+...+++.+ ..|..+..+...+. .+.+.+.+..
T Consensus 3 iLiI~gspr~~--------s~t~~l~~~~~~~~-~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 73 (196)
T 3lcm_A 3 ILIVYTHPNPT--------SFNAEILKQVQTNL-SKEHTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTW 73 (196)
T ss_dssp EEEEECCSCTT--------SHHHHHHHHHHHHS-CTTSEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHHHHHHHH
T ss_pred EEEEEeCCCCC--------ChHHHHHHHHHHHh-cCCCeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHHHHHHHh
Confidence 66777777531 12344555555555 57888887754321 1234456778
Q ss_pred CCEEEEcCCCCCCccchH----HHHHHHHHHH
Q 023716 120 VNGVLYTGGWAKDGLYYA----IVEKVFKKIL 147 (278)
Q Consensus 120 iDGlIl~GG~~~~p~~~~----~~~~li~~al 147 (278)
+|+|||. .|.|+. ..+.+++++.
T Consensus 74 AD~iV~~-----~P~y~~~~pa~LK~~iD~v~ 100 (196)
T 3lcm_A 74 ADHLIFI-----FPIWWSGMPAILKGFIDRVF 100 (196)
T ss_dssp CSEEEEE-----EECBTTBCCHHHHHHHHHHS
T ss_pred CCEEEEE-----CchhhccccHHHHHHHHHHc
Confidence 9999985 344432 3455565553
No 202
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=31.24 E-value=52 Score=26.95 Aligned_cols=42 Identities=10% Similarity=0.093 Sum_probs=27.4
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHc--CCeEEEEeC
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA--GARVIPLIY 106 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~--Ga~~v~i~~ 106 (278)
+..++.|.++|..+. .....-+...+++.+++. |..+..+..
T Consensus 4 M~kiLiI~gSpr~~~------~S~s~~l~~~~~~~~~~~~~g~ev~~~dL 47 (211)
T 3p0r_A 4 MTKVLFVKANNRPAE------QAVSVKLYEAFLASYKEAHPNDTVVELDL 47 (211)
T ss_dssp CCEEEEEECCCSCTT------TCHHHHHHHHHHHHHHHHCTTSEEEEEEG
T ss_pred cCEEEEEEeCCCCCC------CCHHHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 345888888886211 123455667788888876 888877643
No 203
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=30.91 E-value=59 Score=24.85 Aligned_cols=39 Identities=21% Similarity=0.144 Sum_probs=22.7
Q ss_pred HHHHHHHHHcCCeEEEEeCCCC-------hhhHHHhcccCCEEEEc
Q 023716 88 ASYVKFVESAGARVIPLIYNEP-------EDVLFEKLELVNGVLYT 126 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~-------~~~l~~~l~~iDGlIl~ 126 (278)
....+.+.+.|.++.++..... ...+.++.+.+|-+++.
T Consensus 31 ~~~~~~L~~~G~~V~~vnp~~~~i~G~~~~~s~~el~~~vDlvii~ 76 (138)
T 1y81_A 31 NIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFV 76 (138)
T ss_dssp HHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEEC
T ss_pred HHHHHHHHHCCCEEEEeCCCCCeECCeeecCCHHHhCCCCCEEEEE
Confidence 4566778889998666543221 01233444567777765
No 204
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=30.81 E-value=48 Score=28.43 Aligned_cols=43 Identities=19% Similarity=0.167 Sum_probs=30.0
Q ss_pred HHHHHHHHcCCeEEEEeCCC----ChhhHHHh---cccCCEEEEcCCCCC
Q 023716 89 SYVKFVESAGARVIPLIYNE----PEDVLFEK---LELVNGVLYTGGWAK 131 (278)
Q Consensus 89 syv~~le~~Ga~~v~i~~~~----~~~~l~~~---l~~iDGlIl~GG~~~ 131 (278)
.+.+.|++.|+.++.+|.-. +.+.+.+. +..+|.||||...++
T Consensus 39 ~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~l~~~~~~d~lifTS~naV 88 (286)
T 1jr2_A 39 PYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFTSPRAV 88 (286)
T ss_dssp HHHHHHHTTTCEEEEEECEEEEECCHHHHHHHHTCGGGCSEEEECCHHHH
T ss_pred HHHHHHHHCCCceEEEeeEEEecCCHHHHHHHHhCcccccEEEEeCHHHH
Confidence 57889999999988877543 22233333 367899999976553
No 205
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=30.05 E-value=2e+02 Score=23.68 Aligned_cols=88 Identities=14% Similarity=0.086 Sum_probs=51.4
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHH-HHHHHcCCeEEEEeCCCChhhHHHhc--ccCCEEEEcCCCCCCccc
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYV-KFVESAGARVIPLIYNEPEDVLFEKL--ELVNGVLYTGGWAKDGLY 135 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv-~~le~~Ga~~v~i~~~~~~~~l~~~l--~~iDGlIl~GG~~~~p~~ 135 (278)
.+|.|=+.+-+++. +-|...++ ..++..|.+++-+-.+.+.+++.+.. .++|.|.++|+....+ .
T Consensus 91 ~~~~vll~~v~gd~-----------HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~-~ 158 (215)
T 3ezx_A 91 EAGLAITFVAEGDI-----------HDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTT-S 158 (215)
T ss_dssp -CCEEEEEECTTCC-----------CCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHH-H
T ss_pred CCCeEEEEeCCCCh-----------hHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccC-c
Confidence 45666666655432 22344555 47788999999998887877775544 4689999966654322 2
Q ss_pred hHHHHHHHHHHHHhcCCCCCCcEE
Q 023716 136 YAIVEKVFKKILEKNDAGDHFPLY 159 (278)
Q Consensus 136 ~~~~~~li~~al~~~~~g~~~PVL 159 (278)
....+++++...+.+. .+.+||+
T Consensus 159 ~~~~~~~i~~l~~~~~-~~~v~v~ 181 (215)
T 3ezx_A 159 MLGQKDLMDRLNEEKL-RDSVKCM 181 (215)
T ss_dssp HTHHHHHHHHHHHTTC-GGGSEEE
T ss_pred HHHHHHHHHHHHHcCC-CCCCEEE
Confidence 2234456655554431 1135654
No 206
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=29.46 E-value=61 Score=27.99 Aligned_cols=61 Identities=13% Similarity=0.068 Sum_probs=37.4
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHH---hc--ccCCEEEEcCC
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFE---KL--ELVNGVLYTGG 128 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~---~l--~~iDGlIl~GG 128 (278)
...+||++..... + ....-+.....+.+++.|..+++...+. .+...+ .+ ..+||||+.+.
T Consensus 63 ~~~~Igvi~~~~~-------~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~vdGiIi~~~ 128 (333)
T 3jvd_A 63 RSALVGVIVPDLS-------N-EYYSESLQTIQQDLKAAGYQMLVAEANS-VQAQDVVMESLISIQAAGIIHVPV 128 (333)
T ss_dssp -CCEEEEEESCSS-------S-HHHHHHHHHHHHHHHHHTCEEEEEECCS-HHHHHHHHHHHHHHTCSEEEECCC
T ss_pred CCCEEEEEeCCCc-------C-hHHHHHHHHHHHHHHHCCCEEEEECCCC-hHHHHHHHHHHHhCCCCEEEEcch
Confidence 3468999875321 1 1233345556677888899998887654 332222 12 47999999875
No 207
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=28.89 E-value=1.2e+02 Score=26.20 Aligned_cols=62 Identities=13% Similarity=0.088 Sum_probs=37.4
Q ss_pred HHHHHHHHcCCeEEEEeCC--------CChhhHHHhcccCCEEEEcCCCCCCccch--HHHHHHHHHHHHhc
Q 023716 89 SYVKFVESAGARVIPLIYN--------EPEDVLFEKLELVNGVLYTGGWAKDGLYY--AIVEKVFKKILEKN 150 (278)
Q Consensus 89 syv~~le~~Ga~~v~i~~~--------~~~~~l~~~l~~iDGlIl~GG~~~~p~~~--~~~~~li~~al~~~ 150 (278)
+|...++..|++++.++.+ .+.+.+++.++....|+++--..-.+..+ ...+++.+.+.+.+
T Consensus 126 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~ 197 (391)
T 4dq6_A 126 PFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKDVKLFILCNPHNPVGRVWTKDELKKLGDICLKHN 197 (391)
T ss_dssp HHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhcCCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcC
Confidence 4667888999999999876 25566777666555565643211011111 23456777776655
No 208
>1v8a_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, structural genomics, riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii} PDB: 3hpd_A
Probab=28.54 E-value=2.5e+02 Score=23.71 Aligned_cols=77 Identities=19% Similarity=0.142 Sum_probs=47.6
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHH
Q 023716 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAI 138 (278)
Q Consensus 59 ~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~ 138 (278)
.+|+|==.|+.-. ...-...+-..|+.|+... ..+++.+.++.+|.+++--|-. ++...+.
T Consensus 14 ~~plvh~itn~v~---------------~~~~an~~la~gasp~M~~---~~~e~~~~~~~~dalvi~~G~~-~~~~~~~ 74 (265)
T 1v8a_A 14 RRPLVHNITNFVV---------------MNTTANALLALGASPVMAH---AEEELEEMIRLADAVVINIGTL-DSGWRRS 74 (265)
T ss_dssp HCCEEEEECCTTT---------------HHHHHHHHHHHTCEEEECC---CTTTHHHHHHHCSEEEEECTTC-CHHHHHH
T ss_pred cCCeEEEEcccee---------------ecchHHHHHhcCCCccccC---CHHHHHHHHHHCCEEEEEECCC-CHHHHHH
Confidence 4587776665421 1233457788999999854 3455677788899999944443 3333333
Q ss_pred HHHHHHHHHHhcCCCCCCcEE
Q 023716 139 VEKVFKKILEKNDAGDHFPLY 159 (278)
Q Consensus 139 ~~~li~~al~~~~~g~~~PVL 159 (278)
...+++.+.+.+ +|+.
T Consensus 75 ~~~~~~~a~~~~-----~pvV 90 (265)
T 1v8a_A 75 MVKATEIANELG-----KPIV 90 (265)
T ss_dssp HHHHHHHHHHHT-----CCEE
T ss_pred HHHHHHHHHHcC-----CcEE
Confidence 345556666666 7764
No 209
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=28.11 E-value=1.2e+02 Score=25.95 Aligned_cols=61 Identities=21% Similarity=0.044 Sum_probs=36.1
Q ss_pred HHHHHHHHcCCeEEEEe--CCC----ChhhHHHhcc------cCCEEEEcCCCCCCccchHHHHHHHHHHHHhc
Q 023716 89 SYVKFVESAGARVIPLI--YNE----PEDVLFEKLE------LVNGVLYTGGWAKDGLYYAIVEKVFKKILEKN 150 (278)
Q Consensus 89 syv~~le~~Ga~~v~i~--~~~----~~~~l~~~l~------~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~ 150 (278)
++...++..|++++.++ .+. +.+.+++.++ +...|+++......+..+. .+++.+.+.+.+
T Consensus 105 ~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~-~~~i~~~~~~~~ 177 (371)
T 2e7j_A 105 SSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPD-VKKIAKVCSEYD 177 (371)
T ss_dssp HHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCC-HHHHHHHHHTTT
T ss_pred HHHHHHHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccCC-HHHHHHHHHHcC
Confidence 45566888999999998 653 4566666664 4566777654321111111 245666665554
No 210
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=28.01 E-value=2e+02 Score=24.68 Aligned_cols=95 Identities=15% Similarity=0.010 Sum_probs=51.9
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChh--h-HHHhcccCCEEEEcCCCCCCccchHH
Q 023716 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPED--V-LFEKLELVNGVLYTGGWAKDGLYYAI 138 (278)
Q Consensus 62 vIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~--~-l~~~l~~iDGlIl~GG~~~~p~~~~~ 138 (278)
.+.|..+|..+. +..... .....+++++.|..+.+..-....+ + ..+..+..|.|+..||.. +
T Consensus 10 ~~~vi~Np~sG~------~~~~~~-~~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~~~d~vv~~GGDG-------T 75 (304)
T 3s40_A 10 KVLLIVNPKAGQ------GDLHTN-LTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFASKVDLIIVFGGDG-------T 75 (304)
T ss_dssp SEEEEECTTCSS------SCHHHH-HHHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTTTCSEEEEEECHH-------H
T ss_pred EEEEEECcccCC------CchHHH-HHHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhcCCCEEEEEccch-------H
Confidence 366777875432 111222 3457788999998877665332211 1 223335789999999954 3
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEechHH-HHHHHHh
Q 023716 139 VEKVFKKILEKNDAGDHFPLYAHCLGFE-LLTMIIS 173 (278)
Q Consensus 139 ~~~li~~al~~~~~g~~~PVLGIClG~Q-lL~~~~G 173 (278)
...+++..... +...|+..|=.|-- -++..+|
T Consensus 76 l~~v~~~l~~~---~~~~~l~iiP~Gt~N~~ar~lg 108 (304)
T 3s40_A 76 VFECTNGLAPL---EIRPTLAIIPGGTCNDFSRTLG 108 (304)
T ss_dssp HHHHHHHHTTC---SSCCEEEEEECSSCCHHHHHTT
T ss_pred HHHHHHHHhhC---CCCCcEEEecCCcHHHHHHHcC
Confidence 33444444331 12377777666643 3344444
No 211
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=27.97 E-value=99 Score=23.56 Aligned_cols=77 Identities=18% Similarity=0.103 Sum_probs=40.9
Q ss_pred HHHHHHHHHcCCeEEEEeCC--CC-------hhhHHHhcccCCEEEEcCCCCCCccchHH----------------HHHH
Q 023716 88 ASYVKFVESAGARVIPLIYN--EP-------EDVLFEKLELVNGVLYTGGWAKDGLYYAI----------------VEKV 142 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~--~~-------~~~l~~~l~~iDGlIl~GG~~~~p~~~~~----------------~~~l 142 (278)
....+++.+.|.++.++... .. ...+.++-+.+|-+++.=-...-+...++ .+++
T Consensus 30 ~~~~~~l~~~G~~v~~vnp~~~~~~i~G~~~~~sl~el~~~vDlavi~vp~~~~~~v~~~~~~~gi~~i~~~~g~~~~~~ 109 (140)
T 1iuk_A 30 HYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVFRPPSALMDHLPEVLALRPGLVWLQSGIRHPEF 109 (140)
T ss_dssp HHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEECSCHHHHTTTHHHHHHHCCSCEEECTTCCCHHH
T ss_pred HHHHHHHHHCCCEEEEeCCCcccCcCCCEEecCCHHHCCCCCCEEEEEeCHHHHHHHHHHHHHcCCCEEEEcCCcCHHHH
Confidence 34667788999986666433 11 01233333456766664322100111110 1456
Q ss_pred HHHHHHhcCCCCCCcEEE-EechHHHHH
Q 023716 143 FKKILEKNDAGDHFPLYA-HCLGFELLT 169 (278)
Q Consensus 143 i~~al~~~~~g~~~PVLG-IClG~QlL~ 169 (278)
.+++.+.+ +.++| =|.|++.=.
T Consensus 110 ~~~a~~~G-----ir~vgpnc~g~~~~~ 132 (140)
T 1iuk_A 110 EKALKEAG-----IPVVADRCLMVEHKR 132 (140)
T ss_dssp HHHHHHTT-----CCEEESCCHHHHHHH
T ss_pred HHHHHHcC-----CEEEcCCccceEChh
Confidence 66666666 78888 788876543
No 212
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=27.54 E-value=1.2e+02 Score=26.34 Aligned_cols=38 Identities=18% Similarity=0.187 Sum_probs=28.0
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeC
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIY 106 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~ 106 (278)
.|.-|.++|... ....-+...+++.++++|..|.++..
T Consensus 24 KiLII~aHP~~~--------S~n~aL~~~~~~~l~~~G~eV~v~DL 61 (280)
T 4gi5_A 24 KVLLIYAHPEPR--------SLNGALKNFAIRHLQQAGHEVQVSDL 61 (280)
T ss_dssp EEEEEECCSCTT--------SHHHHHHHHHHHHHHHTTCEEEEEET
T ss_pred eEEEEEeCCCCc--------cHHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 477789998532 12445677899999999999888754
No 213
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=27.41 E-value=2e+02 Score=24.93 Aligned_cols=59 Identities=15% Similarity=0.059 Sum_probs=35.8
Q ss_pred HHHHHHHHcCCeEEEEeCC-------CChhhHHHhcc--cCCEEEEcC-----CCCCCccchHHHHHHHHHHHHhc
Q 023716 89 SYVKFVESAGARVIPLIYN-------EPEDVLFEKLE--LVNGVLYTG-----GWAKDGLYYAIVEKVFKKILEKN 150 (278)
Q Consensus 89 syv~~le~~Ga~~v~i~~~-------~~~~~l~~~l~--~iDGlIl~G-----G~~~~p~~~~~~~~li~~al~~~ 150 (278)
+|...++..|++++.+|.+ .+.+.+++.++ +...|+++. |...+.. ..+++.+.+.+.+
T Consensus 123 ~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~---~l~~l~~~~~~~~ 195 (390)
T 1d2f_A 123 AFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCD---ELEIMADLCERHG 195 (390)
T ss_dssp HHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTT---HHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcCHH---HHHHHHHHHHHcC
Confidence 4667788899999988864 34566666664 456777742 2212222 3446666666554
No 214
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=26.74 E-value=1.9e+02 Score=25.01 Aligned_cols=61 Identities=11% Similarity=0.098 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCCeEEEEeCCC------ChhhHHHhcccCCEEEEcCCCCCCcc-c-hHHHHHHHHHHHHhc
Q 023716 88 ASYVKFVESAGARVIPLIYNE------PEDVLFEKLELVNGVLYTGGWAKDGL-Y-YAIVEKVFKKILEKN 150 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~------~~~~l~~~l~~iDGlIl~GG~~~~p~-~-~~~~~~li~~al~~~ 150 (278)
.+|.+.++..|++++.++.+. +.+.+.+. +...|+++--..-.+. + ....+++.+.+.+.+
T Consensus 126 ~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~--~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~ 194 (391)
T 3h14_A 126 PSYRQILRALGLVPVDLPTAPENRLQPVPADFAGL--DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQG 194 (391)
T ss_dssp HHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTS--CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHhc--CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcC
Confidence 356788899999999999863 23333322 5678888532110111 1 123457777777665
No 215
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=26.61 E-value=64 Score=28.36 Aligned_cols=69 Identities=10% Similarity=0.051 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHcCCeEEEE-eCCCChhhHHHhc----ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEEE
Q 023716 86 IAASYVKFVESAGARVIPL-IYNEPEDVLFEKL----ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYA 160 (278)
Q Consensus 86 i~~syv~~le~~Ga~~v~i-~~~~~~~~l~~~l----~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVLG 160 (278)
+...+.+.+++.|++++-. .|+.. .++...+ .++|.|+++|... +. .++...++.. +...|++|
T Consensus 138 ~~~~F~~~~~~~Gg~vv~~~~y~~~-~d~~~~l~~i~~~pDaV~~~~~~~-------~~-~~i~~~~~~~--g~~~pl~~ 206 (325)
T 2h4a_A 138 VGNAFNVRWQQLAGTDANIRYYNLP-ADVTYFVQENNSNTTALYAVASPT-------EL-AEXKGYLTNI--VPNLAIYA 206 (325)
T ss_dssp HHHHHHHHHHHHHSSCCEEEEESST-THHHHHHHHSTTCCCEEEECCCHH-------HH-HHHHHHHTTT--CTTCEEEE
T ss_pred HHHHHHHHHHHcCCCcceeEecCCH-HHHHHHHHhcCCCCCEEEEeCCHH-------HH-hhhhhhHhhc--CCCCCEEE
Confidence 4566778888888876644 34433 3333333 4689999986532 22 3444444332 66799999
Q ss_pred EechH
Q 023716 161 HCLGF 165 (278)
Q Consensus 161 IClG~ 165 (278)
.-.-.
T Consensus 207 ~~~~~ 211 (325)
T 2h4a_A 207 SSRAS 211 (325)
T ss_dssp CGGGC
T ss_pred ecccc
Confidence 85433
No 216
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=26.08 E-value=1.8e+02 Score=24.88 Aligned_cols=60 Identities=25% Similarity=0.265 Sum_probs=37.3
Q ss_pred HHHHHHHcCCeEEEEeCC----CChhhHHHhc---ccCCEEEEcCCCCCCccchHHHHHHHHHHHHhc
Q 023716 90 YVKFVESAGARVIPLIYN----EPEDVLFEKL---ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKN 150 (278)
Q Consensus 90 yv~~le~~Ga~~v~i~~~----~~~~~l~~~l---~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~ 150 (278)
|.+.++..|++++.++.+ .+.+.+++.+ .+...|+++......+... ..+++.+.+.+.+
T Consensus 110 ~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~ 176 (386)
T 2dr1_A 110 YKEVVESNGRKAVVLEYEPGKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLN-PLPELAKVAKEHD 176 (386)
T ss_dssp HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEEC-CHHHHHHHHHHTT
T ss_pred HHHHHHHhCCceEEEecCCCCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhC-CHHHHHHHHHHcC
Confidence 677888899999999875 3456676666 3578888874321111111 1355666666555
No 217
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=25.99 E-value=40 Score=27.84 Aligned_cols=44 Identities=7% Similarity=-0.065 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHcCCeEEEEeCCCCh----hhHHHhc-ccCCEEEEcCCC
Q 023716 86 IAASYVKFVESAGARVIPLIYNEPE----DVLFEKL-ELVNGVLYTGGW 129 (278)
Q Consensus 86 i~~syv~~le~~Ga~~v~i~~~~~~----~~l~~~l-~~iDGlIl~GG~ 129 (278)
+.....+.+++.|..+++.....+. +.+..+. .++||||+.+..
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 65 (276)
T 2h0a_A 17 LVEGIEGVLLEQRYDLALFPILSLARLKRYLENTTLAYLTDGLILASYD 65 (276)
T ss_dssp HHHHHHHHHGGGTCEEEECCCCSCCCCC---------CCCSEEEEESCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCchhhHHHHHHHHHhCCCCEEEEecCC
Confidence 4455666777789888776433221 1222222 469999998754
No 218
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=25.78 E-value=58 Score=23.90 Aligned_cols=29 Identities=38% Similarity=0.646 Sum_probs=23.0
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCChhhHHH
Q 023716 87 AASYVKFVESAGARVIPLIYNEPEDVLFE 115 (278)
Q Consensus 87 ~~syv~~le~~Ga~~v~i~~~~~~~~l~~ 115 (278)
+..-++++.+.|+.+.+|.|+.+...+++
T Consensus 64 aekairfvkslgaqvliiiydqdqnrlee 92 (134)
T 2l69_A 64 AEKAIRFVKSLGAQVLIIIYDQDQNRLEE 92 (134)
T ss_dssp HHHHHHHHHHHCCCCEEEEECSCHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEEEeCchhHHHH
Confidence 34567899999999999999987665554
No 219
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=25.78 E-value=27 Score=29.83 Aligned_cols=68 Identities=6% Similarity=0.008 Sum_probs=41.4
Q ss_pred HHHHHHHHHcCCeEEEEeCC----CChhhHHHhcccCCEEEEcCCCCC--C--ccch------HHHHHHHHHHHHhcCCC
Q 023716 88 ASYVKFVESAGARVIPLIYN----EPEDVLFEKLELVNGVLYTGGWAK--D--GLYY------AIVEKVFKKILEKNDAG 153 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~----~~~~~l~~~l~~iDGlIl~GG~~~--~--p~~~------~~~~~li~~al~~~~~g 153 (278)
..+.++|+..|..+..++.. .-++. .+.|+.+|.|||.+.... . +..+ ....+.++..++++
T Consensus 43 ~~l~~aL~~~~~~v~~~~~~~~~~~fp~~-~~~L~~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~~G--- 118 (256)
T 2gk3_A 43 TWLLECLRKGGVDIDYMPAHTVQIAFPES-IDELNRYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKNG--- 118 (256)
T ss_dssp HHHHHHHHHTTCEEEEECHHHHHHCCCCS-HHHHHTCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHTT---
T ss_pred HHHHHHHHhcCceEEEEecccchhhCCcC-hhHHhcCCEEEEeCCchhhcccccccccccccChHHHHHHHHHHHhC---
Confidence 34667899999999888532 11111 135788999999985431 1 1111 12235666666667
Q ss_pred CCCcEEEE
Q 023716 154 DHFPLYAH 161 (278)
Q Consensus 154 ~~~PVLGI 161 (278)
..+++|
T Consensus 119 --Ggll~i 124 (256)
T 2gk3_A 119 --GGLLMI 124 (256)
T ss_dssp --CEEEEE
T ss_pred --CEEEEE
Confidence 889988
No 220
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A
Probab=25.56 E-value=1.2e+02 Score=25.65 Aligned_cols=55 Identities=20% Similarity=0.275 Sum_probs=38.0
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcc-----cCCEEEEc
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLE-----LVNGVLYT 126 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~-----~iDGlIl~ 126 (278)
.+.|+++.|-. .||-+.-.-+++++.|......+++.+++++.+.++ .++|+.++
T Consensus 13 ~~~~liG~pi~-----------hs~sp~~h~~~~~~~g~~~~y~~~~~~~~~l~~~i~~l~~~~~~G~nvt 72 (275)
T 2hk9_A 13 QLYGVIGFPVK-----------HSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFKALKVKGINVT 72 (275)
T ss_dssp EEEEEEESSCT-----------TCSHHHHHHHHHHHHTCSEEEEEEECCGGGHHHHHHHHHHHTCCEEEEC
T ss_pred eEEEEECCCcc-----------cccCHHHHHHHHHHcCCCcEEEEEECCHHHHHHHHHHHHhCCCCEEEEC
Confidence 46799988743 344455566788999987777776666666655443 47788886
No 221
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=25.53 E-value=94 Score=24.44 Aligned_cols=91 Identities=11% Similarity=0.024 Sum_probs=47.2
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHc------CCeEEEEeCCC------------------------C--
Q 023716 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA------GARVIPLIYNE------------------------P-- 109 (278)
Q Consensus 62 vIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~------Ga~~v~i~~~~------------------------~-- 109 (278)
++.|.+++... .....++..+.+.+++. |..+..+.... +
T Consensus 3 ilii~gS~r~~--------~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (191)
T 1t0i_A 3 VGIIMGSVRAK--------RVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSK 74 (191)
T ss_dssp EEEEECCCCSS--------CSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHH
T ss_pred EEEEeCCCCCC--------CchHHHHHHHHHHHHHhhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHH
Confidence 55666666421 23555666677777776 67777663221 0
Q ss_pred hhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcC-CCCCCcEEEEechH
Q 023716 110 EDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKND-AGDHFPLYAHCLGF 165 (278)
Q Consensus 110 ~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~-~g~~~PVLGIClG~ 165 (278)
.+.+.+.+..+|+|||. .|.|+......++.++++-. .-.++|++-++.|-
T Consensus 75 ~~~~~~~l~~aD~iI~~-----sP~y~~~~p~~lK~~iD~~~~~l~gK~~~~~~~G~ 126 (191)
T 1t0i_A 75 TRSWSRIVNALDIIVFV-----TPQYNWGYPAALKNAIDRLYHEWHGKPALVVSYGG 126 (191)
T ss_dssp HHHHHHHHHTCSEEEEE-----EECBTTBCCHHHHHHHHTCSTTTTTCEEEEEEEET
T ss_pred HHHHHHHHHhCCEEEEE-----eceECCCCCHHHHHHHHHHHhhcCCCEEEEEEeCC
Confidence 02344567789999985 23343222222333333211 11236777666553
No 222
>3hpd_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, ATP-binding, M metal-binding, nucleotide-binding, thiamine biosynthesis; 1.85A {Pyrococcus horikoshii}
Probab=25.00 E-value=1.1e+02 Score=26.36 Aligned_cols=61 Identities=20% Similarity=0.133 Sum_probs=41.2
Q ss_pred HHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEE
Q 023716 90 YVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (278)
Q Consensus 90 yv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVL 159 (278)
-...+-..|+.|+... .+++..++....|+++|-=|-. ++.+........+.+-+.+ +|+.
T Consensus 30 ~AN~lLA~GasPiMa~---~~~E~~e~~~~a~al~iNiGtl-~~~~~~~m~~A~~~A~~~~-----~PvV 90 (265)
T 3hpd_A 30 TANALLALGASPVMAH---AEEELEEMIRLADAVVINIGTL-DSGWRRSMVKATEIANELG-----KPIV 90 (265)
T ss_dssp HHHHHHHHTCEEEECC---CTTTHHHHHHHCSEEEEECTTC-CHHHHHHHHHHHHHHHHHT-----CCEE
T ss_pred HHHHHHHhCCchhhcC---CHHHHHHHHHHCCeEEEECCCC-ChHHHHHHHHHHHHHHHcC-----CCEE
Confidence 3357788999998753 3456777788899999976654 3444444445556666666 8875
No 223
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=24.63 E-value=3.1e+02 Score=24.21 Aligned_cols=46 Identities=11% Similarity=0.052 Sum_probs=32.3
Q ss_pred chhhhHHHHHHHHHHcCCeEEEEeCCC-ChhhHHHhcccCCEEEEcC
Q 023716 82 NASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTG 127 (278)
Q Consensus 82 ~~~yi~~syv~~le~~Ga~~v~i~~~~-~~~~l~~~l~~iDGlIl~G 127 (278)
+...++....+.+++.|..+.++.... +...+.+.+...|+|||..
T Consensus 269 nT~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~~~D~iiigs 315 (414)
T 2q9u_A 269 TTHRMALALLDGARSTGCETVLLEMTSSDITKVALHTYDSGAVAFAS 315 (414)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHHTCSEEEEEC
T ss_pred hHHHHHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHHHhCCEEEEEc
Confidence 466677778888888898887776543 2233444677899999863
No 224
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=24.18 E-value=1.5e+02 Score=27.39 Aligned_cols=61 Identities=13% Similarity=0.108 Sum_probs=38.8
Q ss_pred HHHHHHHHcCCeEEEEeCCC------ChhhHHHhccc------CCEEEEcCCCCC-Cc-cch-HHHHHHHHHHHHhc
Q 023716 89 SYVKFVESAGARVIPLIYNE------PEDVLFEKLEL------VNGVLYTGGWAK-DG-LYY-AIVEKVFKKILEKN 150 (278)
Q Consensus 89 syv~~le~~Ga~~v~i~~~~------~~~~l~~~l~~------iDGlIl~GG~~~-~p-~~~-~~~~~li~~al~~~ 150 (278)
+|...++..|++++.++.+. +.+.+++.++. ...|++. -+.. .+ .+. ...+++++.|.+.+
T Consensus 193 ~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~-np~NPTG~v~s~~~l~~i~~la~~~~ 268 (498)
T 3ihj_A 193 LYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCII-NPGNPTGQVQSRKCIEDVIHFAWEEK 268 (498)
T ss_dssp HHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEE-CCCCCCCCcCCHHHHHHHHHHHHHcC
Confidence 57788899999999998764 34566666543 5677775 2221 11 111 23457888887766
No 225
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=23.72 E-value=3.4e+02 Score=23.26 Aligned_cols=63 Identities=16% Similarity=0.113 Sum_probs=37.0
Q ss_pred HHHHHHHHHcCCeEEEEeCC---C---ChhhHHHhcc---cCCEEEEcCCCCC-Ccc-ch-HHHHHHHHHHHHhc
Q 023716 88 ASYVKFVESAGARVIPLIYN---E---PEDVLFEKLE---LVNGVLYTGGWAK-DGL-YY-AIVEKVFKKILEKN 150 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~---~---~~~~l~~~l~---~iDGlIl~GG~~~-~p~-~~-~~~~~li~~al~~~ 150 (278)
.+|...++..|++++.++.. . +.+.+.+.++ .-..+++..-+.. .+. +. ...+++.+.+.+.+
T Consensus 132 ~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~ 206 (397)
T 3fsl_A 132 ENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARE 206 (397)
T ss_dssp HHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCC
Confidence 35778889999999999872 2 4566666665 2234555322211 111 11 23457777777766
No 226
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=23.62 E-value=2.3e+02 Score=23.64 Aligned_cols=96 Identities=9% Similarity=0.100 Sum_probs=59.0
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCCh--hhHHHhcccCCEEEEcCCCCCCccc
Q 023716 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE--DVLFEKLELVNGVLYTGGWAKDGLY 135 (278)
Q Consensus 58 ~~rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~--~~l~~~l~~iDGlIl~GG~~~~p~~ 135 (278)
+..|+|.|+..... . -+....+++.+.|.+.+.++++.+. +.+..+-+.+..+++--|.-.+...
T Consensus 11 ~~~~vi~Vir~~~~-----------~--~a~~~a~al~~gGi~~iEvt~~t~~a~~~I~~l~~~~p~~~IGAGTVlt~~~ 77 (217)
T 3lab_A 11 NTKPLIPVIVIDDL-----------V--HAIPMAKALVAGGVHLLEVTLRTEAGLAAISAIKKAVPEAIVGAGTVCTADD 77 (217)
T ss_dssp TSCSEEEEECCSCG-----------G--GHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTSEEEEECCCSHHH
T ss_pred hhCCEEEEEEcCCH-----------H--HHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCeEeeccccCHHH
Confidence 45699999976421 1 1356789999999999999887542 3344333444444443354434332
Q ss_pred hHH--------------HHHHHHHHHHhcCCCCCC------cEEEEechHHHHHHH
Q 023716 136 YAI--------------VEKVFKKILEKNDAGDHF------PLYAHCLGFELLTMI 171 (278)
Q Consensus 136 ~~~--------------~~~li~~al~~~~~g~~~------PVLGIClG~QlL~~~ 171 (278)
.+. ..++++++.+.+ + |++-=|.=..-+..+
T Consensus 78 a~~ai~AGA~fivsP~~~~evi~~~~~~~-----v~~~~~~~~~PG~~TptE~~~A 128 (217)
T 3lab_A 78 FQKAIDAGAQFIVSPGLTPELIEKAKQVK-----LDGQWQGVFLPGVATASEVMIA 128 (217)
T ss_dssp HHHHHHHTCSEEEESSCCHHHHHHHHHHH-----HHCSCCCEEEEEECSHHHHHHH
T ss_pred HHHHHHcCCCEEEeCCCcHHHHHHHHHcC-----CCccCCCeEeCCCCCHHHHHHH
Confidence 222 257888888888 8 887666555444433
No 227
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=23.44 E-value=2.4e+02 Score=24.47 Aligned_cols=61 Identities=16% Similarity=0.114 Sum_probs=35.8
Q ss_pred HHHHHHHcCCeEEEEeCCC------ChhhHHHhcc-cCCEEEEcCCCCCCccc--hHHHHHHHHHHHHhc
Q 023716 90 YVKFVESAGARVIPLIYNE------PEDVLFEKLE-LVNGVLYTGGWAKDGLY--YAIVEKVFKKILEKN 150 (278)
Q Consensus 90 yv~~le~~Ga~~v~i~~~~------~~~~l~~~l~-~iDGlIl~GG~~~~p~~--~~~~~~li~~al~~~ 150 (278)
|...++..|++++.++.+. +.+.+++.++ +...|+++....-.+.. ....+++.+.+.+.+
T Consensus 138 ~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~ 207 (389)
T 1o4s_A 138 YIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRN 207 (389)
T ss_dssp HHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 5567788999999998763 4456666553 34567764321111111 123456777776666
No 228
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=23.34 E-value=2.4e+02 Score=24.32 Aligned_cols=38 Identities=32% Similarity=0.509 Sum_probs=27.6
Q ss_pred HHHHHHHHcCCeEEEEeCCC-----ChhhHHHhcc-cCCEEEEc
Q 023716 89 SYVKFVESAGARVIPLIYNE-----PEDVLFEKLE-LVNGVLYT 126 (278)
Q Consensus 89 syv~~le~~Ga~~v~i~~~~-----~~~~l~~~l~-~iDGlIl~ 126 (278)
.|...++..|++++.+|.+. +.+.+.+.++ +...|+++
T Consensus 136 ~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~ 179 (398)
T 3ele_A 136 EYKVFVNAAGARLVEVPADTEHFQIDFDALEERINAHTRGVIIN 179 (398)
T ss_dssp HHHHHHHHTTCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEEEC
T ss_pred hhHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhCcCCCEEEEc
Confidence 46678889999999998764 4566666553 46677774
No 229
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=23.30 E-value=1.3e+02 Score=24.93 Aligned_cols=61 Identities=10% Similarity=0.028 Sum_probs=37.0
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhh----HHHhc-ccCCEEEEcCCC
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~----l~~~l-~~iDGlIl~GG~ 129 (278)
..+||++... .. ....-+.....+.+++.|..+++.....+.+. +..+. .++||||+.+..
T Consensus 8 ~~~Igvi~~~-~~--------~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 73 (288)
T 2qu7_A 8 SNIIAFIVPD-QN--------PFFTEVLTEISHECQKHHLHVAVASSEENEDKQQDLIETFVSQNVSAIILVPVK 73 (288)
T ss_dssp EEEEEEEESS-CC--------HHHHHHHHHHHHHHGGGTCEEEEEECTTCHHHHHHHHHHHHHTTEEEEEECCSS
T ss_pred CCEEEEEECC-CC--------chHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCccEEEEecCC
Confidence 3589998743 11 12333445566677788998887765544332 22222 469999998754
No 230
>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5
Probab=23.27 E-value=1.2e+02 Score=25.92 Aligned_cols=55 Identities=18% Similarity=0.246 Sum_probs=37.0
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcc-----cCCEEEEc
Q 023716 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLE-----LVNGVLYT 126 (278)
Q Consensus 61 PvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~-----~iDGlIl~ 126 (278)
.+.||+.+|-. .|+-+.-+-+++++.|.....++++.+++++.+.++ .++|+.++
T Consensus 12 ~~~~viG~pi~-----------hS~Sp~~h~~~~~~~gi~~~y~~~~~~~~~l~~~i~~l~~~~~~G~nVt 71 (287)
T 1nvt_A 12 KVIGLIGHPVE-----------HSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIVGFNVT 71 (287)
T ss_dssp EEEEEEESSCT-----------TCSHHHHHHHHHHHTTCCEEEEEEECCGGGGGGHHHHHHHHTCCEEEEC
T ss_pred cEEEEECCCcc-----------cccCHHHHHHHHHHcCCCcEEEEEEcCHHHHHHHHHHHHhCCCCEEEEc
Confidence 47899998853 234455567888999987777776655555444332 57888876
No 231
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=23.24 E-value=1.3e+02 Score=26.63 Aligned_cols=60 Identities=8% Similarity=-0.026 Sum_probs=37.0
Q ss_pred HHHHHHHHHcCCeEEEEeCCC-----ChhhHHHhc--ccCCEEEEcC-----CCCCCccchHHHHHHHHHHHHhc
Q 023716 88 ASYVKFVESAGARVIPLIYNE-----PEDVLFEKL--ELVNGVLYTG-----GWAKDGLYYAIVEKVFKKILEKN 150 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~-----~~~~l~~~l--~~iDGlIl~G-----G~~~~p~~~~~~~~li~~al~~~ 150 (278)
.+|...++..|++++.++.+. +.+.+++.+ .+...|+++- |...+. ...+++.+.+.+.+
T Consensus 144 ~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~---~~l~~i~~~a~~~~ 215 (437)
T 3g0t_A 144 NLNKLQCRILGQKFESFDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNPTWQCMTD---EELRIIGELATKHD 215 (437)
T ss_dssp HHHHHHHHHHTCCCEEEEGGGGCTTHHHHHHHHHHTTTCCCEEEEESSCTTTCCCCCH---HHHHHHHHHHHHTT
T ss_pred HhHHHHHHHcCCEEEEEeecCCCCccCHHHHHHHHhcCCceEEEEeCCCCCCCCcCCH---HHHHHHHHHHHHCC
Confidence 357778889999999998752 345565555 3567787732 221111 23456777776655
No 232
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=23.01 E-value=80 Score=24.83 Aligned_cols=44 Identities=14% Similarity=0.144 Sum_probs=30.3
Q ss_pred chhhhHHHHHHHHHH-cCCeEEEEeCCCCh-----------------hhHHHhcccCCEEEEc
Q 023716 82 NASYIAASYVKFVES-AGARVIPLIYNEPE-----------------DVLFEKLELVNGVLYT 126 (278)
Q Consensus 82 ~~~yi~~syv~~le~-~Ga~~v~i~~~~~~-----------------~~l~~~l~~iDGlIl~ 126 (278)
....++..+.+.+++ .|+.+..+...... .. .+.+...|+|||.
T Consensus 14 ~t~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~aD~ii~g 75 (198)
T 3b6i_A 14 HIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVAT-PQELADYDAIIFG 75 (198)
T ss_dssp HHHHHHHHHHHHHHTSTTCEEEEEECCCCSCHHHHHHTTCCCCCSCBCC-GGGGGGCSEEEEE
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEEEccccCchhhhhhcccccccCchhh-HHHHHHCCEEEEE
Confidence 356677778888888 89988877664310 11 3457789999984
No 233
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=22.70 E-value=1.6e+02 Score=25.68 Aligned_cols=60 Identities=13% Similarity=0.092 Sum_probs=36.9
Q ss_pred HHHHHHHcCCeEEEEeCCC----ChhhHHHhcc--cCCEEEEcCCCCCCccchHHHHHHHHHHHHhc
Q 023716 90 YVKFVESAGARVIPLIYNE----PEDVLFEKLE--LVNGVLYTGGWAKDGLYYAIVEKVFKKILEKN 150 (278)
Q Consensus 90 yv~~le~~Ga~~v~i~~~~----~~~~l~~~l~--~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~ 150 (278)
+.+.++..|++++.++.+. +.+.+++.++ +...|+++......+.... .+++.+.+.+.+
T Consensus 101 ~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~-l~~i~~l~~~~~ 166 (416)
T 3isl_A 101 LTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHP-LKAIGEACRTED 166 (416)
T ss_dssp HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC-CHHHHHHHHHTT
T ss_pred HHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCceecC-HHHHHHHHHHcC
Confidence 6678889999999998764 4566666664 5778888754221111111 234666565555
No 234
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=22.61 E-value=1.6e+02 Score=25.11 Aligned_cols=61 Identities=25% Similarity=0.192 Sum_probs=38.1
Q ss_pred HHHHHHHHcCCeEEEEeCCC----ChhhHHHhcc--cCCEEEEcCCCCCCccchHHHHHHHHHHHHhc
Q 023716 89 SYVKFVESAGARVIPLIYNE----PEDVLFEKLE--LVNGVLYTGGWAKDGLYYAIVEKVFKKILEKN 150 (278)
Q Consensus 89 syv~~le~~Ga~~v~i~~~~----~~~~l~~~l~--~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~ 150 (278)
+|.+.++..|++++.+|.+. +.+.+++.++ +...++++-.....+... ..+++.+.+.+.+
T Consensus 135 ~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~ 201 (397)
T 3f9t_A 135 SFEKGREMMDLEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTID-NIEELSKIAKENN 201 (397)
T ss_dssp HHHHHHHHHTCEEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBC-CHHHHHHHHHHHT
T ss_pred HHHHHHHHcCceeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCC-CHHHHHHHHHHhC
Confidence 46677888899999998863 4566666554 467777765432111111 2345777776666
No 235
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=22.17 E-value=1.1e+02 Score=25.24 Aligned_cols=59 Identities=12% Similarity=0.103 Sum_probs=36.1
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCChh----hHHHhc-ccCCEEEEcCC
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPED----VLFEKL-ELVNGVLYTGG 128 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~----~l~~~l-~~iDGlIl~GG 128 (278)
..+||++..... + ....-+.....+.+++.|..+++...+ +.+ .+..+. ..+|||| .+.
T Consensus 5 ~~~Igvi~~~~~-------~-~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI-~~~ 68 (280)
T 3gyb_A 5 TQLIAVLIDDYS-------N-PWFIDLIQSLSDVLTPKGYRLSVIDSL-TSQAGTDPITSALSMRPDGII-IAQ 68 (280)
T ss_dssp CCEEEEEESCTT-------S-GGGHHHHHHHHHHHGGGTCEEEEECSS-SSCSSSCHHHHHHTTCCSEEE-EES
T ss_pred cCEEEEEeCCCC-------C-hHHHHHHHHHHHHHHHCCCEEEEEeCC-CchHHHHHHHHHHhCCCCEEE-ecC
Confidence 468999875321 1 123444566777888899999888665 322 223222 5799999 443
No 236
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=21.89 E-value=75 Score=26.92 Aligned_cols=81 Identities=15% Similarity=0.020 Sum_probs=45.5
Q ss_pred HHHHHHHHHcCCeEEEEeCCCC-----hhhHHH---hcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEE
Q 023716 88 ASYVKFVESAGARVIPLIYNEP-----EDVLFE---KLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~-----~~~l~~---~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVL 159 (278)
..+.+.|++.|+.++.+|.-.. .+.+.+ .++.+|.|||+...++ +.+++...+.+..-+..+++
T Consensus 27 ~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~naV--------~~~~~~l~~~~~~~~~~~i~ 98 (269)
T 3re1_A 27 AALARVLADAGIFSSSLPLLETEPLPLTPAQRSIIFELLNYSAVIVVSKPAA--------RLAIELIDEVWPQPPMQPWF 98 (269)
T ss_dssp HHHHHHHHTTTCEEEECCCCEEEECCCHHHHHHHHHTGGGSSEEEECSHHHH--------HHHHHHHHHHCSSCCCSCEE
T ss_pred HHHHHHHHHCCCCEEEcCCEEEecCCCcHHHHHHHHhccCCCEEEEECHHHH--------HHHHHHHHHhCCCcccCEEE
Confidence 5688999999999988876541 122322 3577999999966442 23333332222111126777
Q ss_pred EEechHHHHHHHHhCcc
Q 023716 160 AHCLGFELLTMIISKDK 176 (278)
Q Consensus 160 GIClG~QlL~~~~Gg~~ 176 (278)
.|.-+---.-...|-+.
T Consensus 99 aVG~~Ta~aL~~~G~~~ 115 (269)
T 3re1_A 99 SVGSATGQILLDYGLDA 115 (269)
T ss_dssp ESSHHHHHHHHHTTCCE
T ss_pred EECHHHHHHHHHcCCCc
Confidence 66655433223335443
No 237
>1ehs_A STB, heat-stable enterotoxin B; disulfide; NMR {Escherichia coli} SCOP: g.2.1.1
Probab=21.67 E-value=11 Score=23.09 Aligned_cols=16 Identities=13% Similarity=0.287 Sum_probs=11.9
Q ss_pred CcEEEEechHHHHHHH
Q 023716 156 FPLYAHCLGFELLTMI 171 (278)
Q Consensus 156 ~PVLGIClG~QlL~~~ 171 (278)
--.-|-|.|.|+|..+
T Consensus 30 dgtagacfgaqimvaa 45 (48)
T 1ehs_A 30 DGTAGACFGAQIMVAA 45 (48)
T ss_dssp SSSCCTTTTTHHHHTT
T ss_pred cCccccccchhHhhhc
Confidence 3456889999998654
No 238
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=21.57 E-value=1.5e+02 Score=25.35 Aligned_cols=46 Identities=15% Similarity=0.104 Sum_probs=28.3
Q ss_pred hHHHhc--ccCCEEEEcCCCC----------CCccchHHHHHHHHHHHHhcCCCCCCcEEEEec
Q 023716 112 VLFEKL--ELVNGVLYTGGWA----------KDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (278)
Q Consensus 112 ~l~~~l--~~iDGlIl~GG~~----------~~p~~~~~~~~li~~al~~~~~g~~~PVLGICl 163 (278)
.++++. ..+|++.+-.+.- ..|......+.++..+.+.+ +|+ |||-
T Consensus 158 ~~~eIaa~~~vd~l~iG~~DL~~~lg~~~~~~~p~v~~a~~~iv~aa~aaG-----~~~-g~~~ 215 (261)
T 3qz6_A 158 DIDSILAVQGVDAVIFGPRDLSNDLGIIGQTEHPKVYECYEKVYRAADRQG-----VVK-GFFT 215 (261)
T ss_dssp THHHHHTSTTCCEEEECHHHHHHHTTCTTCTTCHHHHHHHHHHHHHHHHHT-----CEE-EEEE
T ss_pred HHHHHhCCCCCCEEEECHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhC-----CCE-EEEe
Confidence 344555 5699998832210 12233344567888888888 887 8884
No 239
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=21.54 E-value=88 Score=26.08 Aligned_cols=81 Identities=10% Similarity=-0.086 Sum_probs=45.1
Q ss_pred HHHHHHHHHcCCeEEEEeCCCC-----hhhHH---HhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcEE
Q 023716 88 ASYVKFVESAGARVIPLIYNEP-----EDVLF---EKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~~-----~~~l~---~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PVL 159 (278)
..+.+.|++.|+.++.+|.-.. .+.+. ..+..+|.|||+...++ +.+++...+.+..-+..+++
T Consensus 19 ~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~~aV--------~~~~~~l~~~~~~~~~~~i~ 90 (254)
T 4es6_A 19 AALAASLGEAGVHSSSLPLLAIDPLEETPEQRTLMLDLDRYCAVVVVSKPAA--------RLGLERLDRYWPQPPQQTWC 90 (254)
T ss_dssp HHHHHHHHHTTCEEEECCSCEEEECCCCHHHHHHHHTGGGCSEEEECSHHHH--------HHHHHHHHHHCSSCCSCEEE
T ss_pred HHHHHHHHHCCCcEEEeCCEEEeeCcChHHHHHHHHhccCCCEEEEECHHHH--------HHHHHHHHHhCCCcccCEEE
Confidence 5688999999999988865531 12232 23567999999966432 23333332222111226676
Q ss_pred EEechHHHHHHHHhCcc
Q 023716 160 AHCLGFELLTMIISKDK 176 (278)
Q Consensus 160 GIClG~QlL~~~~Gg~~ 176 (278)
.|.-+-.-.-...|-+.
T Consensus 91 aVG~~Ta~~L~~~G~~~ 107 (254)
T 4es6_A 91 SVGAATAAILEAYGLDV 107 (254)
T ss_dssp ESSHHHHHHHHHHTCCE
T ss_pred EECHHHHHHHHHcCCCc
Confidence 66555433333345543
No 240
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=21.46 E-value=2.4e+02 Score=24.73 Aligned_cols=46 Identities=11% Similarity=0.080 Sum_probs=32.7
Q ss_pred chhhhHHHHHHHHHHcCCeEEEEeCCC-ChhhHHHhcccCCEEEEcC
Q 023716 82 NASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTG 127 (278)
Q Consensus 82 ~~~yi~~syv~~le~~Ga~~v~i~~~~-~~~~l~~~l~~iDGlIl~G 127 (278)
+...++....+.+++.|..+.++.... +.+.+.+.+...|+|||.-
T Consensus 269 nT~~la~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~l~~~d~iiigs 315 (404)
T 2ohh_A 269 STRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIALGA 315 (404)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEEEC
Confidence 466677777888888898888876643 2334445677899999863
No 241
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=21.36 E-value=82 Score=25.59 Aligned_cols=47 Identities=6% Similarity=0.104 Sum_probs=26.6
Q ss_pred hHHHhcccCCEEEEcCCCCCCccch----HHHHHHHHHHHHhc-CCCCCCcEEEEec
Q 023716 112 VLFEKLELVNGVLYTGGWAKDGLYY----AIVEKVFKKILEKN-DAGDHFPLYAHCL 163 (278)
Q Consensus 112 ~l~~~l~~iDGlIl~GG~~~~p~~~----~~~~~li~~al~~~-~~g~~~PVLGICl 163 (278)
.+.+.+..+|+|||. .|.|. ...+.++++....+ ..=.++|+.-++-
T Consensus 66 ~~~~~i~~AD~iVi~-----tP~Y~~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~t 117 (199)
T 4hs4_A 66 TMAQQIATADAVVIV-----TPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTA 117 (199)
T ss_dssp HHHHHHHHSSEEEEE-----ECCBTTBCCHHHHHHHHHHTTSSSCTTTTCEEEEEEE
T ss_pred HHHHHHHhCCEEEEE-----cCccCCCcCHHHHHHHHHhcccCCcccCCCEEEEEEe
Confidence 345567889999985 23333 34556666654311 1223477766654
No 242
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=21.31 E-value=2.7e+02 Score=23.59 Aligned_cols=39 Identities=15% Similarity=0.017 Sum_probs=27.5
Q ss_pred HHHHHHHHHcCCeEEEE-eCCCChhhHHHhcccCCEEEEc
Q 023716 88 ASYVKFVESAGARVIPL-IYNEPEDVLFEKLELVNGVLYT 126 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i-~~~~~~~~l~~~l~~iDGlIl~ 126 (278)
...++.+++.|.++-+. ....+.+.+..+++.+|-|++.
T Consensus 124 ~~~i~~ir~~G~k~Gvalnp~Tp~e~l~~~l~~vD~VlvM 163 (246)
T 3inp_A 124 DRSLQLIKSFGIQAGLALNPATGIDCLKYVESNIDRVLIM 163 (246)
T ss_dssp HHHHHHHHTTTSEEEEEECTTCCSGGGTTTGGGCSEEEEE
T ss_pred HHHHHHHHHcCCeEEEEecCCCCHHHHHHHHhcCCEEEEe
Confidence 45778888889887544 3334556677788889998873
No 243
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=21.27 E-value=1.9e+02 Score=21.10 Aligned_cols=43 Identities=14% Similarity=0.124 Sum_probs=30.1
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEeCCCChhhHHHhcccCCEEEEc
Q 023716 81 TNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYT 126 (278)
Q Consensus 81 ~~~~yi~~syv~~le~~Ga~~v~i~~~~~~~~l~~~l~~iDGlIl~ 126 (278)
.+...++....+.+++.|..+.++...... . ..+...|+|+|-
T Consensus 10 GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~--~-~~l~~~d~iiig 52 (138)
T 5nul_A 10 GNTEKMAELIAKGIIESGKDVNTINVSDVN--I-DELLNEDILILG 52 (138)
T ss_dssp SHHHHHHHHHHHHHHHTTCCCEEEEGGGCC--H-HHHTTCSEEEEE
T ss_pred chHHHHHHHHHHHHHHCCCeEEEEEhhhCC--H-HHHhhCCEEEEE
Confidence 346677888888899999888777654321 1 236678998884
No 244
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=21.23 E-value=2.9e+02 Score=23.75 Aligned_cols=62 Identities=15% Similarity=0.191 Sum_probs=36.2
Q ss_pred HHHHHHHHcCCeEEEEeCCC------ChhhHHHhcc-cCCEEEEcCCCCCCccch--HHHHHHHHHHHHhc
Q 023716 89 SYVKFVESAGARVIPLIYNE------PEDVLFEKLE-LVNGVLYTGGWAKDGLYY--AIVEKVFKKILEKN 150 (278)
Q Consensus 89 syv~~le~~Ga~~v~i~~~~------~~~~l~~~l~-~iDGlIl~GG~~~~p~~~--~~~~~li~~al~~~ 150 (278)
+|...++..|++++.++.+. +.+.+++.++ +...|+++....-.+..+ ...+++.+.+.+.+
T Consensus 126 ~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~ 196 (388)
T 1j32_A 126 SYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAG 196 (388)
T ss_dssp HHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 45667888999999998753 4456666554 345666643211111111 23456777776665
No 245
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=20.70 E-value=2.5e+02 Score=24.43 Aligned_cols=63 Identities=14% Similarity=0.133 Sum_probs=37.0
Q ss_pred HHHHHHHHHcCCeEEEEeCCC------ChhhHHHhcc-cCCEEEEcCCCCCCccc--hHHHHHHHHHHHHhc
Q 023716 88 ASYVKFVESAGARVIPLIYNE------PEDVLFEKLE-LVNGVLYTGGWAKDGLY--YAIVEKVFKKILEKN 150 (278)
Q Consensus 88 ~syv~~le~~Ga~~v~i~~~~------~~~~l~~~l~-~iDGlIl~GG~~~~p~~--~~~~~~li~~al~~~ 150 (278)
.+|...++..|++++.++.+. +.+.+++.++ +...|+++......+.. ....+++.+.+.+.+
T Consensus 136 ~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~ 207 (406)
T 1xi9_A 136 PPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYE 207 (406)
T ss_dssp HHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhCcCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcC
Confidence 356777888999999888653 4556666554 35567775321111111 123456777776665
No 246
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=20.51 E-value=2.1e+02 Score=24.54 Aligned_cols=62 Identities=15% Similarity=0.078 Sum_probs=37.7
Q ss_pred HHHHHHHHcCCeEEEEeCCC------ChhhHHHhcc-cCCEEEEcCCCCCCcc-c-hHHHHHHHHHHHHhc
Q 023716 89 SYVKFVESAGARVIPLIYNE------PEDVLFEKLE-LVNGVLYTGGWAKDGL-Y-YAIVEKVFKKILEKN 150 (278)
Q Consensus 89 syv~~le~~Ga~~v~i~~~~------~~~~l~~~l~-~iDGlIl~GG~~~~p~-~-~~~~~~li~~al~~~ 150 (278)
++...++..|++++.++.+. +.+.+++.++ +...|+++.-....+. + .+..+++.+.+.+.+
T Consensus 117 ~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~ 187 (375)
T 3op7_A 117 QLYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVG 187 (375)
T ss_dssp HHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHcCCEEEEEeccccCCCCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 35677889999999888652 5566666553 5778888632111111 1 123456777776666
No 247
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=20.32 E-value=2.6e+02 Score=23.50 Aligned_cols=91 Identities=9% Similarity=0.025 Sum_probs=53.3
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEeCCCCh--hhHHHhcccCCEEEEcCCCCCCccchH
Q 023716 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE--DVLFEKLELVNGVLYTGGWAKDGLYYA 137 (278)
Q Consensus 60 rPvIGIl~~~~~~~~~~~~~~~~~~yi~~syv~~le~~Ga~~v~i~~~~~~--~~l~~~l~~iDGlIl~GG~~~~p~~~~ 137 (278)
.|+|.|+..... . ......+.+.+.|.+.+.++++.+. +.+..+-+.+..+++--|.-.+....+
T Consensus 34 ~~vv~Vir~~~~-----------~--~a~~~a~al~~gGi~~iEvt~~t~~a~e~I~~l~~~~~~~~iGaGTVlt~~~a~ 100 (232)
T 4e38_A 34 LKVIPVIAIDNA-----------E--DIIPLGKVLAENGLPAAEITFRSDAAVEAIRLLRQAQPEMLIGAGTILNGEQAL 100 (232)
T ss_dssp HCEEEEECCSSG-----------G--GHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTCEEEEECCCSHHHHH
T ss_pred CCEEEEEEcCCH-----------H--HHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCCEEeECCcCCHHHHH
Confidence 389999976421 1 1456788999999999999887542 233333333434444324333333322
Q ss_pred H--------------HHHHHHHHHHhcCCCCCCcEEEEechHHHH
Q 023716 138 I--------------VEKVFKKILEKNDAGDHFPLYAHCLGFELL 168 (278)
Q Consensus 138 ~--------------~~~li~~al~~~~~g~~~PVLGIClG~QlL 168 (278)
. ..++++.+.+.+ +|++-=|.=..-+
T Consensus 101 ~Ai~AGA~fIvsP~~~~~vi~~~~~~g-----i~~ipGv~TptEi 140 (232)
T 4e38_A 101 AAKEAGATFVVSPGFNPNTVRACQEIG-----IDIVPGVNNPSTV 140 (232)
T ss_dssp HHHHHTCSEEECSSCCHHHHHHHHHHT-----CEEECEECSHHHH
T ss_pred HHHHcCCCEEEeCCCCHHHHHHHHHcC-----CCEEcCCCCHHHH
Confidence 2 146788888877 8875444444333
No 248
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=20.24 E-value=2.2e+02 Score=25.14 Aligned_cols=62 Identities=10% Similarity=0.016 Sum_probs=37.9
Q ss_pred HHHHHHHHcCCeEEEEeCC-------CChhhHHHhcc--cCCEEEEcCCCCCCccc--hHHHHHHHHHHHHhc
Q 023716 89 SYVKFVESAGARVIPLIYN-------EPEDVLFEKLE--LVNGVLYTGGWAKDGLY--YAIVEKVFKKILEKN 150 (278)
Q Consensus 89 syv~~le~~Ga~~v~i~~~-------~~~~~l~~~l~--~iDGlIl~GG~~~~p~~--~~~~~~li~~al~~~ 150 (278)
.+...++..|++++.+|++ .+.+.+++.++ +...|+++--..-.... ....+++.+.+.+.+
T Consensus 155 ~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~ 227 (421)
T 3l8a_A 155 PFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHG 227 (421)
T ss_dssp HHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcC
Confidence 4667888899999999875 25667777664 56777774321111111 123456777776655
No 249
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=20.13 E-value=2.3e+02 Score=24.55 Aligned_cols=62 Identities=15% Similarity=0.144 Sum_probs=35.9
Q ss_pred HHHHHHHHcCCeEEEEeCC---------------CChhhHHHhcc-cCCEEEEcCCCCCCccch--HHHHHHHHHHHHhc
Q 023716 89 SYVKFVESAGARVIPLIYN---------------EPEDVLFEKLE-LVNGVLYTGGWAKDGLYY--AIVEKVFKKILEKN 150 (278)
Q Consensus 89 syv~~le~~Ga~~v~i~~~---------------~~~~~l~~~l~-~iDGlIl~GG~~~~p~~~--~~~~~li~~al~~~ 150 (278)
.|...++..|++++.++.+ .+.+.+.+.++ +...|+++.-..-.+..+ ...+++.+.+.+.+
T Consensus 121 ~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~ 200 (410)
T 3e2y_A 121 CYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHD 200 (410)
T ss_dssp THHHHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcCCCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcC
Confidence 3567788899999998875 24455655553 456777742211111111 23456777776655
No 250
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=20.11 E-value=2.6e+02 Score=24.09 Aligned_cols=75 Identities=9% Similarity=-0.061 Sum_probs=45.1
Q ss_pred hhhhHHHHHHHHHHcC-CeEEEEeCCC---ChhhHHHhcccCCEEEEcCCCCCCccchHHHHHHHHHHHHhcCCCCCCcE
Q 023716 83 ASYIAASYVKFVESAG-ARVIPLIYNE---PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPL 158 (278)
Q Consensus 83 ~~yi~~syv~~le~~G-a~~v~i~~~~---~~~~l~~~l~~iDGlIl~GG~~~~p~~~~~~~~li~~al~~~~~g~~~PV 158 (278)
.......+.+.+++.| ..+....... +.+.+.+.|++.|.||+.-..+ .+....++.++..++++ .++
T Consensus 18 ~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~~~L~~~D~vV~~~~~~---~l~~~~~~~l~~yV~~G-----ggl 89 (281)
T 4e5v_A 18 WQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFVLDFSPYQLVVLDYNGD---SWPEETNRRFLEYVQNG-----GGV 89 (281)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCCCCCTTCSEEEECCCSS---CCCHHHHHHHHHHHHTT-----CEE
T ss_pred hHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHhhhhhcCCEEEEeCCCC---cCCHHHHHHHHHHHHcC-----CCE
Confidence 3344456778889888 6776653211 1122223578999999854322 12234445566666777 899
Q ss_pred EEEechH
Q 023716 159 YAHCLGF 165 (278)
Q Consensus 159 LGIClG~ 165 (278)
+|+.-+.
T Consensus 90 v~~H~a~ 96 (281)
T 4e5v_A 90 VIYHAAD 96 (281)
T ss_dssp EEEGGGG
T ss_pred EEEeccc
Confidence 9998754
Done!