BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023717
(278 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GIJ|A Chain A, Crystal Structure Of Pseudouridine Monophosphate
Glycosidase Complexed With Sulfate
pdb|4GIJ|B Chain B, Crystal Structure Of Pseudouridine Monophosphate
Glycosidase Complexed With Sulfate
pdb|4GIJ|C Chain C, Crystal Structure Of Pseudouridine Monophosphate
Glycosidase Complexed With Sulfate
pdb|4GIK|A Chain A, Crystal Structure Of Pseudouridine Monophosphate
GlycosidaseLINEAR R5p Adduct
pdb|4GIK|B Chain B, Crystal Structure Of Pseudouridine Monophosphate
GlycosidaseLINEAR R5p Adduct
pdb|4GIK|C Chain C, Crystal Structure Of Pseudouridine Monophosphate
GlycosidaseLINEAR R5p Adduct
pdb|4GIL|A Chain A, Crystal Structure Of Pseudouridine Monophosphate
GlycosidaseLINEAR Pseudouridine 5'-Phosphate Adduct
pdb|4GIL|B Chain B, Crystal Structure Of Pseudouridine Monophosphate
GlycosidaseLINEAR Pseudouridine 5'-Phosphate Adduct
pdb|4GIL|C Chain C, Crystal Structure Of Pseudouridine Monophosphate
GlycosidaseLINEAR Pseudouridine 5'-Phosphate Adduct
Length = 335
Score = 264 bits (674), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 142/266 (53%), Positives = 174/266 (65%)
Query: 1 MPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRD 60
MP+PQN +TA EVE +R GAVPATIAI+ G+ VGLS EE+E L + G K +RRD
Sbjct: 62 MPFPQNAQTAIEVEETIRKQGAVPATIAIIGGVMKVGLSKEEIELLGREGHNVTKVSRRD 121
Query: 61 IAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPV 120
+ VVA NGATTV++TM A++ GI VF TGGIGGVHR EHT DIS+DL EL T V
Sbjct: 122 LPFVVAAGKNGATTVASTMIIAALAGIKVFATGGIGGVHRGAEHTFDISADLQELANTNV 181
Query: 121 AVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARL 180
VV AG KSILD+ T EYLET GV + Y+T PAFF TS V R+DS + AR
Sbjct: 182 TVVCAGAKSILDLGLTTEYLETFGVPLIGYQTKALPAFFCRTSPFDVSIRLDSASEIARA 241
Query: 181 IDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVN 240
+ V + L GLV+ PIP + A I +AI A+ EA + + G TPFLLARV
Sbjct: 242 MVVKWQSGLNGGLVVANPIPEQFAMPEHTINAAIDQAVAEAEAQGVIGKESTPFLLARVA 301
Query: 241 ELTGGLSLASNIALVKNNALIGAKIS 266
ELTGG SL SNI LV NNA++ ++I+
Sbjct: 302 ELTGGDSLKSNIQLVFNNAILASEIA 327
>pdb|4GIM|A Chain A, Crystal Structure Of Pseudouridine Monophosphate
Glycosidase Complexed With Pseudouridine 5'-Phosphate
pdb|4GIM|B Chain B, Crystal Structure Of Pseudouridine Monophosphate
Glycosidase Complexed With Pseudouridine 5'-Phosphate
pdb|4GIM|C Chain C, Crystal Structure Of Pseudouridine Monophosphate
Glycosidase Complexed With Pseudouridine 5'-Phosphate
Length = 335
Score = 261 bits (668), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 141/266 (53%), Positives = 173/266 (65%)
Query: 1 MPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRD 60
MP+PQN +TA EVE +R GAVPATIAI+ G+ VGLS EE+E L + G K +RRD
Sbjct: 62 MPFPQNAQTAIEVEETIRKQGAVPATIAIIGGVMKVGLSKEEIELLGREGHNVTKVSRRD 121
Query: 61 IAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPV 120
+ VVA NGATTV++TM A++ GI VF TGGIGGVHR EHT DIS+DL EL T V
Sbjct: 122 LPFVVAAGKNGATTVASTMIIAALAGIKVFATGGIGGVHRGAEHTFDISADLQELANTNV 181
Query: 121 AVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARL 180
VV AG SILD+ T EYLET GV + Y+T PAFF TS V R+DS + AR
Sbjct: 182 TVVCAGAASILDLGLTTEYLETFGVPLIGYQTKALPAFFCRTSPFDVSIRLDSASEIARA 241
Query: 181 IDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVN 240
+ V + L GLV+ PIP + A I +AI A+ EA + + G TPFLLARV
Sbjct: 242 MVVKWQSGLNGGLVVANPIPEQFAMPEHTINAAIDQAVAEAEAQGVIGKESTPFLLARVA 301
Query: 241 ELTGGLSLASNIALVKNNALIGAKIS 266
ELTGG SL SNI LV NNA++ ++I+
Sbjct: 302 ELTGGDSLKSNIQLVFNNAILASEIA 327
>pdb|4EX8|A Chain A, Crystal Structure Of The Prealnumycin C-glycosynthase Alna
pdb|4EX9|A Chain A, Crystal Structure Of The Prealnumycin C-glycosynthase Alna
In Complex With Ribulose 5-phosphate
Length = 316
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 103/268 (38%), Positives = 149/268 (55%), Gaps = 2/268 (0%)
Query: 8 ETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVAT 67
ETA +E VR GAVPATI I G VGL+ +ER A K + RDI +A
Sbjct: 50 ETASLIEKAVRGAGAVPATIGIAGGKLVVGLTDSLIERFAST-KGIPKISARDIGGALAG 108
Query: 68 RGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGI 127
G GATTV+ T+ A GI VF T GIGGVHR GE T+DIS DL + +T + VVS G
Sbjct: 109 GGLGATTVAGTIVIAERAGIQVFTTAGIGGVHRRGEDTLDISPDLLQFRKTKMTVVSGGA 168
Query: 128 KSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKL 187
KSILD T EYLET GV V Y+T++ AF + V R+D AR + + ++
Sbjct: 169 KSILDHRLTAEYLETAGVPVYGYRTDKLAAFVVREADVPV-TRMDDLHTAARAAEAHWQV 227
Query: 188 KLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLS 247
+++ PI + A ++E+AI AL + ++ I GNA +P+L+ + +GG+
Sbjct: 228 NGPGTVLLTSPIDEQDAVDEAIVEAAIAEALAQCDQEGIVGNAVSPYLMKALARASGGML 287
Query: 248 LASNIALVKNNALIGAKISVALAQLRQQ 275
+ +L+ + A + + S AL+ ++ +
Sbjct: 288 PKAGRSLLLSTARVAGEFSAALSAVQAE 315
>pdb|1VKM|A Chain A, Crystal Structure Of An Indigoidine Synthase A (Idga)-Like
Protein (Tm1464) From Thermotoga Maritima Msb8 At 1.90 A
Resolution
pdb|1VKM|B Chain B, Crystal Structure Of An Indigoidine Synthase A (Idga)-Like
Protein (Tm1464) From Thermotoga Maritima Msb8 At 1.90 A
Resolution
pdb|1VKM|C Chain C, Crystal Structure Of An Indigoidine Synthase A (Idga)-Like
Protein (Tm1464) From Thermotoga Maritima Msb8 At 1.90 A
Resolution
pdb|1VKM|D Chain D, Crystal Structure Of An Indigoidine Synthase A (Idga)-Like
Protein (Tm1464) From Thermotoga Maritima Msb8 At 1.90 A
Resolution
pdb|1VKM|E Chain E, Crystal Structure Of An Indigoidine Synthase A (Idga)-Like
Protein (Tm1464) From Thermotoga Maritima Msb8 At 1.90 A
Resolution
pdb|1VKM|F Chain F, Crystal Structure Of An Indigoidine Synthase A (Idga)-Like
Protein (Tm1464) From Thermotoga Maritima Msb8 At 1.90 A
Resolution
Length = 297
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 104/271 (38%), Positives = 150/271 (55%), Gaps = 11/271 (4%)
Query: 1 MPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRD 60
+P + E + + I R G A I IL+G G S EELE + G A K R+
Sbjct: 37 LPRKEAIELFRRAKEISREKGFQLAVIGILKGKIVAGXSEEELEAXXREG--ADKVGTRE 94
Query: 61 IAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPV 120
I VVA N ATTVSAT+F + +GI V VTGG GGVH +D+S DLTE +
Sbjct: 95 IPIVVAEGKNAATTVSATIFLSRRIGIEVVVTGGTGGVH---PGRVDVSQDLTEXSSSRA 151
Query: 121 AVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARL 180
+VS+GIKSILD+ T E LET + + ++TNEFP FF+ SG +VP R+++ E+ ++
Sbjct: 152 VLVSSGIKSILDVEATFEXLETLEIPLVGFRTNEFPLFFSRKSGRRVP-RIENVEEVLKI 210
Query: 181 IDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVN 240
+ + +L L + P+P E+ IE L E E + G TPFLL ++
Sbjct: 211 YESXKEXELEKTLXVLNPVPEEYEIPHDEIER-----LLEKIELEVEGKEVTPFLLKKLV 265
Query: 241 ELTGGLSLASNIALVKNNALIGAKISVALAQ 271
E T G +L +N+AL++ N + +I+V L +
Sbjct: 266 EXTNGRTLKANLALLEENVKLAGEIAVKLKR 296
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,516,368
Number of Sequences: 62578
Number of extensions: 297882
Number of successful extensions: 897
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 884
Number of HSP's gapped (non-prelim): 15
length of query: 278
length of database: 14,973,337
effective HSP length: 98
effective length of query: 180
effective length of database: 8,840,693
effective search space: 1591324740
effective search space used: 1591324740
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)