Query 023717
Match_columns 278
No_of_seqs 124 out of 476
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 06:07:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023717.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023717hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04227 Indigoidine_A: Indigo 100.0 2E-122 4E-127 857.9 21.0 269 1-269 25-293 (293)
2 COG2313 IndA Uncharacterized e 100.0 3E-120 6E-125 830.4 28.3 271 1-272 39-309 (310)
3 KOG3009 Predicted carbohydrate 100.0 1.5E-89 3.3E-94 666.8 14.8 274 1-274 54-329 (614)
4 TIGR02643 T_phosphoryl thymidi 91.9 3.9 8.4E-05 41.4 13.4 191 36-244 48-264 (437)
5 PRK05820 deoA thymidine phosph 89.5 4.9 0.00011 40.7 11.6 184 37-235 50-254 (440)
6 TIGR02644 Y_phosphoryl pyrimid 88.9 5.6 0.00012 39.8 11.5 176 37-226 47-228 (405)
7 PRK00188 trpD anthranilate pho 85.7 4 8.6E-05 39.3 8.2 149 37-220 49-209 (339)
8 TIGR02645 ARCH_P_rylase putati 85.5 6.9 0.00015 40.2 10.1 180 37-235 132-331 (493)
9 PRK06078 pyrimidine-nucleoside 85.2 12 0.00026 37.8 11.6 165 37-221 49-224 (434)
10 TIGR01245 trpD anthranilate ph 85.0 4.8 0.0001 38.6 8.4 149 37-220 43-205 (330)
11 PRK04350 thymidine phosphoryla 82.9 10 0.00023 38.9 10.2 186 36-239 126-330 (490)
12 cd03109 DTBS Dethiobiotin synt 82.1 3.1 6.7E-05 34.3 5.1 84 70-154 10-106 (134)
13 PF07302 AroM: AroM protein; 80.5 39 0.00085 31.4 12.2 117 128-253 71-211 (221)
14 cd00377 ICL_PEPM Members of th 79.2 38 0.00082 31.1 11.7 158 77-242 20-194 (243)
15 PF13500 AAA_26: AAA domain; P 79.0 2.2 4.7E-05 36.8 3.3 67 84-151 97-164 (199)
16 TIGR03327 AMP_phos AMP phospho 78.1 20 0.00044 37.0 10.4 178 36-235 132-332 (500)
17 PRK14607 bifunctional glutamin 75.3 10 0.00022 38.7 7.5 44 177-220 352-402 (534)
18 PRK13947 shikimate kinase; Pro 70.7 16 0.00035 30.2 6.4 78 68-148 10-99 (171)
19 PRK12374 putative dithiobiotin 70.7 4.3 9.4E-05 36.3 3.2 70 85-155 104-174 (231)
20 PRK08508 biotin synthase; Prov 70.5 92 0.002 29.0 16.8 185 6-257 73-269 (279)
21 PF08659 KR: KR domain; Inter 69.3 5.6 0.00012 34.0 3.5 104 89-215 3-110 (181)
22 TIGR02822 adh_fam_2 zinc-bindi 68.4 28 0.0006 32.4 8.1 71 76-150 179-255 (329)
23 TIGR00433 bioB biotin syntheta 67.5 99 0.0022 28.2 15.8 190 7-257 97-293 (296)
24 COG2513 PrpB PEP phosphonomuta 66.1 72 0.0016 30.9 10.5 138 77-222 29-177 (289)
25 PF06057 VirJ: Bacterial virul 65.2 7.2 0.00016 35.5 3.5 41 121-163 5-46 (192)
26 PRK06256 biotin synthase; Vali 64.0 1.3E+02 0.0028 28.3 16.2 164 38-257 150-319 (336)
27 PRK10481 hypothetical protein; 63.7 1.2E+02 0.0027 28.0 11.3 122 125-254 71-216 (224)
28 COG0352 ThiE Thiamine monophos 63.4 23 0.0005 32.4 6.4 120 7-140 51-202 (211)
29 PLN02974 adenosylmethionine-8- 61.3 34 0.00073 37.2 8.1 106 86-215 184-290 (817)
30 PLN02641 anthranilate phosphor 61.0 20 0.00043 35.0 5.8 131 11-159 24-160 (343)
31 PRK12744 short chain dehydroge 60.4 59 0.0013 28.4 8.3 75 85-183 7-82 (257)
32 PLN02617 imidazole glycerol ph 59.9 16 0.00036 37.7 5.3 65 72-147 468-536 (538)
33 cd00659 Topo_IB_C DNA topoisom 59.9 72 0.0016 29.3 9.0 68 159-234 90-157 (218)
34 TIGR02319 CPEP_Pphonmut carbox 59.1 73 0.0016 30.6 9.2 160 77-246 27-203 (294)
35 cd08613 GDPD_GDE4_like_1 Glyce 57.9 80 0.0017 30.7 9.3 98 9-115 168-291 (309)
36 PRK08185 hypothetical protein; 57.4 44 0.00096 31.9 7.4 129 1-159 102-236 (283)
37 PRK07523 gluconate 5-dehydroge 57.0 75 0.0016 27.7 8.3 87 84-198 8-95 (255)
38 COG2101 SPT15 TATA-box binding 57.0 5.2 0.00011 36.3 1.0 26 122-147 64-93 (185)
39 cd06167 LabA_like LabA_like pr 56.7 19 0.00042 29.3 4.3 76 75-153 54-132 (149)
40 TIGR00347 bioD dethiobiotin sy 56.1 12 0.00026 31.1 3.0 64 85-150 98-163 (166)
41 cd01075 NAD_bind_Leu_Phe_Val_D 55.7 49 0.0011 29.3 7.0 137 9-169 9-150 (200)
42 TIGR03649 ergot_EASG ergot alk 55.3 86 0.0019 28.0 8.6 13 88-100 1-13 (285)
43 smart00052 EAL Putative diguan 55.1 73 0.0016 27.2 7.8 78 8-93 133-210 (241)
44 PRK11320 prpB 2-methylisocitra 55.0 1.7E+02 0.0036 28.1 10.9 138 77-222 28-177 (292)
45 PRK15108 biotin synthase; Prov 54.2 1E+02 0.0022 29.7 9.5 106 79-196 85-194 (345)
46 PTZ00254 40S ribosomal protein 53.8 26 0.00057 33.1 5.2 78 125-226 44-142 (249)
47 cd04937 ACT_AKi-DapG-BS_2 ACT 53.6 38 0.00082 24.2 4.9 44 120-173 4-48 (64)
48 PRK04020 rps2P 30S ribosomal p 53.2 28 0.00061 31.8 5.2 77 128-227 43-139 (204)
49 COG0547 TrpD Anthranilate phos 52.9 32 0.0007 33.7 5.8 137 6-159 18-162 (338)
50 cd04729 NanE N-acetylmannosami 52.6 65 0.0014 28.5 7.3 73 73-151 131-206 (219)
51 PF00591 Glycos_transf_3: Glyc 51.6 15 0.00033 33.4 3.2 116 66-197 8-148 (252)
52 PRK09856 fructoselysine 3-epim 51.6 88 0.0019 28.0 8.1 92 132-227 48-144 (275)
53 TIGR01012 Sa_S2_E_A ribosomal 51.5 23 0.0005 32.2 4.3 78 126-227 36-133 (196)
54 PRK12311 rpsB 30S ribosomal pr 51.4 73 0.0016 31.2 7.9 85 128-227 33-177 (326)
55 PRK09880 L-idonate 5-dehydroge 50.9 69 0.0015 29.6 7.5 69 77-147 184-263 (343)
56 PRK00090 bioD dithiobiotin syn 50.9 18 0.00039 31.6 3.5 64 86-151 103-168 (222)
57 cd08233 butanediol_DH_like (2R 50.4 1E+02 0.0022 28.3 8.5 74 72-147 182-269 (351)
58 TIGR00315 cdhB CO dehydrogenas 49.3 14 0.00031 32.5 2.6 57 95-151 6-62 (162)
59 PF00106 adh_short: short chai 49.2 68 0.0015 25.8 6.3 89 89-201 3-92 (167)
60 COG0282 ackA Acetate kinase [E 49.0 33 0.00072 34.5 5.3 59 36-96 255-330 (396)
61 PRK12938 acetyacetyl-CoA reduc 48.5 1.2E+02 0.0025 26.2 8.1 84 88-198 5-89 (246)
62 cd01948 EAL EAL domain. This d 48.5 30 0.00066 29.5 4.4 77 9-93 133-209 (240)
63 PLN02522 ATP citrate (pro-S)-l 47.8 2.4E+02 0.0053 30.0 11.6 122 69-198 175-327 (608)
64 PRK11359 cyclic-di-GMP phospho 47.7 80 0.0017 32.3 7.9 81 5-93 675-755 (799)
65 TIGR00126 deoC deoxyribose-pho 47.6 1.3E+02 0.0028 27.5 8.5 75 9-96 104-185 (211)
66 PLN02482 glutamate-1-semialdeh 47.5 1.7E+02 0.0037 29.6 10.1 45 78-123 272-325 (474)
67 TIGR02320 PEP_mutase phosphoen 47.5 2.6E+02 0.0056 26.7 12.0 161 77-243 20-205 (285)
68 TIGR02317 prpB methylisocitrat 46.8 1.9E+02 0.004 27.7 9.8 135 77-222 24-172 (285)
69 TIGR01081 mpl UDP-N-acetylmura 46.4 46 0.00099 32.6 5.8 69 71-150 8-90 (448)
70 TIGR00361 ComEC_Rec2 DNA inter 46.3 27 0.00058 36.5 4.4 58 88-154 601-660 (662)
71 PTZ00137 2-Cys peroxiredoxin; 46.2 43 0.00093 31.5 5.4 111 111-225 91-231 (261)
72 PRK09522 bifunctional glutamin 46.1 43 0.00093 34.5 5.8 145 37-197 246-418 (531)
73 PRK10754 quinone oxidoreductas 46.1 1.6E+02 0.0034 26.5 8.8 72 73-147 152-236 (327)
74 PRK06278 cobyrinic acid a,c-di 45.9 22 0.00047 36.3 3.6 71 86-156 317-394 (476)
75 TIGR02415 23BDH acetoin reduct 45.4 1.5E+02 0.0033 25.5 8.4 99 88-214 2-105 (254)
76 PRK08591 acetyl-CoA carboxylas 45.4 1.3E+02 0.0028 29.3 8.7 18 76-93 64-81 (451)
77 TIGR03278 methan_mark_10 putat 45.4 1.5E+02 0.0033 29.6 9.3 203 11-258 92-314 (404)
78 TIGR00735 hisF imidazoleglycer 45.3 22 0.00047 32.5 3.2 65 75-147 188-253 (254)
79 PRK14030 glutamate dehydrogena 45.1 84 0.0018 32.0 7.5 135 12-169 242-378 (445)
80 PRK09427 bifunctional indole-3 44.9 2.1E+02 0.0046 29.1 10.3 167 39-241 168-349 (454)
81 COG0707 MurG UDP-N-acetylgluco 44.5 60 0.0013 31.7 6.2 151 86-260 183-336 (357)
82 TIGR02194 GlrX_NrdH Glutaredox 43.8 25 0.00055 25.5 2.8 32 14-47 38-72 (72)
83 PRK11059 regulatory protein Cs 43.3 84 0.0018 32.2 7.3 80 6-93 531-610 (640)
84 PRK09071 hypothetical protein; 43.3 44 0.00094 32.3 5.0 137 7-159 23-164 (323)
85 cd04509 PBP1_ABC_transporter_G 42.8 1.7E+02 0.0038 24.8 8.2 71 137-220 84-162 (299)
86 PRK07478 short chain dehydroge 42.7 1.6E+02 0.0035 25.6 8.1 71 86-183 6-76 (254)
87 PRK07890 short chain dehydroge 42.5 1.9E+02 0.004 25.0 8.4 85 86-198 5-90 (258)
88 PRK05876 short chain dehydroge 42.2 1.8E+02 0.0039 26.2 8.6 100 85-212 5-109 (275)
89 PRK06801 hypothetical protein; 42.0 61 0.0013 30.9 5.7 129 1-159 108-241 (286)
90 PF00591 Glycos_transf_3: Glyc 41.8 16 0.00035 33.3 1.8 121 88-220 2-137 (252)
91 KOG4166 Thiamine pyrophosphate 41.7 74 0.0016 33.2 6.5 144 65-244 159-327 (675)
92 TIGR03527 selenium_YedF seleni 41.5 48 0.001 29.8 4.7 72 112-186 114-190 (194)
93 TIGR02196 GlrX_YruB Glutaredox 41.5 63 0.0014 22.1 4.4 25 20-46 48-72 (74)
94 cd04920 ACT_AKiii-DAPDC_2 ACT 41.1 43 0.00092 24.2 3.6 37 120-156 3-40 (63)
95 PRK05458 guanosine 5'-monophos 41.0 1.1E+02 0.0023 30.0 7.3 84 79-164 154-248 (326)
96 PRK07677 short chain dehydroge 40.7 1.6E+02 0.0035 25.5 7.9 32 88-126 3-34 (252)
97 cd06268 PBP1_ABC_transporter_L 40.6 2.3E+02 0.0049 24.1 9.2 20 133-152 79-98 (298)
98 PRK03202 6-phosphofructokinase 40.6 53 0.0012 31.7 5.2 71 30-115 45-115 (320)
99 PRK13896 cobyrinic acid a,c-di 40.6 30 0.00065 34.8 3.6 62 87-151 78-145 (433)
100 PF05589 DUF768: Protein of un 40.5 42 0.0009 25.6 3.5 32 199-230 17-48 (64)
101 COG1625 Fe-S oxidoreductase, r 40.5 42 0.00092 34.0 4.6 133 121-266 181-327 (414)
102 TIGR01303 IMP_DH_rel_1 IMP deh 40.4 46 0.001 33.9 4.9 54 37-96 274-338 (475)
103 PF01261 AP_endonuc_2: Xylose 39.7 1.9E+02 0.0041 23.9 7.8 92 133-227 29-127 (213)
104 TIGR03279 cyano_FeS_chp putati 39.1 1.9E+02 0.004 29.6 8.9 185 38-258 126-357 (433)
105 TIGR00514 accC acetyl-CoA carb 38.9 2.1E+02 0.0046 28.1 9.1 66 75-148 63-131 (449)
106 PRK08063 enoyl-(acyl carrier p 38.7 2E+02 0.0044 24.6 8.1 86 85-198 3-90 (250)
107 PRK09250 fructose-bisphosphate 38.5 21 0.00046 35.3 2.1 127 6-143 145-304 (348)
108 cd06330 PBP1_Arsenic_SBP_like 38.4 1.8E+02 0.0039 26.5 8.0 38 113-151 60-98 (346)
109 COG2200 Rtn c-di-GMP phosphodi 38.4 1.5E+02 0.0032 27.1 7.5 81 5-93 133-213 (256)
110 PRK09072 short chain dehydroge 38.2 1.3E+02 0.0027 26.5 6.8 82 87-196 6-87 (263)
111 cd08291 ETR_like_1 2-enoyl thi 37.6 1.2E+02 0.0025 27.6 6.7 68 77-147 159-239 (324)
112 TIGR01007 eps_fam capsular exo 36.7 32 0.00069 29.6 2.8 42 114-155 149-190 (204)
113 TIGR03728 glyco_access_1 glyco 36.5 1.3E+02 0.0028 28.9 6.9 64 131-199 2-65 (265)
114 PRK07178 pyruvate carboxylase 36.3 1.3E+02 0.0027 30.1 7.2 18 206-223 172-189 (472)
115 cd06341 PBP1_ABC_ligand_bindin 36.2 2.4E+02 0.0052 25.6 8.5 18 135-152 81-98 (341)
116 PRK06101 short chain dehydroge 36.1 1.5E+02 0.0032 25.7 6.9 94 88-215 3-100 (240)
117 PRK12595 bifunctional 3-deoxy- 35.9 3.9E+02 0.0085 26.3 10.4 73 79-158 175-269 (360)
118 COG0029 NadB Aspartate oxidase 35.7 23 0.0005 36.8 1.9 31 86-116 186-216 (518)
119 PRK07097 gluconate 5-dehydroge 35.5 1.6E+02 0.0035 25.9 7.1 107 82-215 6-116 (265)
120 cd00958 DhnA Class I fructose- 35.5 2.3E+02 0.0051 25.0 8.1 87 73-182 143-231 (235)
121 PF10096 DUF2334: Uncharacteri 35.3 1.1E+02 0.0025 28.0 6.2 95 129-231 14-126 (243)
122 PRK00758 GMP synthase subunit 35.3 37 0.0008 29.1 2.9 39 112-151 35-74 (184)
123 PRK09997 hydroxypyruvate isome 35.2 1.7E+02 0.0037 26.2 7.3 92 131-227 40-139 (258)
124 PRK00726 murG undecaprenyldiph 35.1 1E+02 0.0022 28.4 5.9 47 114-165 208-256 (357)
125 PF04430 DUF498: Protein of un 34.9 45 0.00099 26.8 3.2 32 120-151 56-87 (110)
126 cd00958 DhnA Class I fructose- 34.6 1.6E+02 0.0034 26.1 6.9 29 74-102 110-138 (235)
127 cd08296 CAD_like Cinnamyl alco 34.6 3.6E+02 0.0078 24.6 9.5 73 73-147 174-256 (333)
128 PRK13585 1-(5-phosphoribosyl)- 34.4 2.5E+02 0.0055 24.9 8.2 18 79-96 186-203 (241)
129 PRK10494 hypothetical protein; 34.3 79 0.0017 29.4 5.1 77 74-154 108-211 (259)
130 cd03111 CpaE_like This protein 34.0 79 0.0017 24.8 4.4 70 67-146 8-95 (106)
131 KOG1203 Predicted dehydrogenas 33.8 2.7E+02 0.0059 28.2 9.0 144 84-233 77-243 (411)
132 PF00107 ADH_zinc_N: Zinc-bind 33.7 39 0.00084 26.4 2.6 70 77-148 5-87 (130)
133 PF14246 TetR_C_7: AefR-like t 33.7 16 0.00035 25.2 0.3 46 170-219 4-49 (55)
134 PF13524 Glyco_trans_1_2: Glyc 33.5 23 0.0005 26.4 1.2 65 135-222 14-78 (92)
135 PF00563 EAL: EAL domain; Int 33.4 42 0.00092 28.5 3.0 75 9-93 136-210 (236)
136 PLN02586 probable cinnamyl alc 33.2 3.1E+02 0.0068 25.8 9.0 72 77-150 198-279 (360)
137 PLN02424 ketopantoate hydroxym 33.0 1.2E+02 0.0026 29.9 6.3 110 76-188 45-192 (332)
138 TIGR03699 mena_SCO4550 menaqui 32.9 2.2E+02 0.0048 26.8 8.0 85 75-191 183-268 (340)
139 PRK02083 imidazole glycerol ph 32.6 58 0.0013 29.5 3.9 17 131-147 235-251 (253)
140 cd08281 liver_ADH_like1 Zinc-d 32.4 3.7E+02 0.008 25.2 9.3 70 76-147 205-287 (371)
141 cd01533 4RHOD_Repeat_2 Member 32.4 1.5E+02 0.0032 22.9 5.7 26 117-146 66-92 (109)
142 PRK12745 3-ketoacyl-(acyl-carr 32.3 1.3E+02 0.0028 26.0 5.9 82 88-197 4-87 (256)
143 COG0132 BioD Dethiobiotin synt 32.3 41 0.00088 31.1 2.8 88 62-151 79-171 (223)
144 COG3946 VirJ Type IV secretory 32.3 29 0.00063 35.5 2.0 69 120-196 262-332 (456)
145 PRK06245 cofG FO synthase subu 32.3 3.1E+02 0.0067 25.9 8.8 72 170-242 39-124 (336)
146 COG0413 PanB Ketopantoate hydr 32.2 47 0.001 31.9 3.3 76 121-202 110-186 (268)
147 cd06557 KPHMT-like Ketopantoat 32.2 4.3E+02 0.0094 24.8 11.7 72 77-148 23-108 (254)
148 COG2266 GTP:adenosylcobinamide 32.2 35 0.00075 30.9 2.3 95 77-182 54-165 (177)
149 PRK08654 pyruvate carboxylase 32.1 3.3E+02 0.0071 27.7 9.5 17 132-148 115-131 (499)
150 cd07244 FosA FosA, a Fosfomyci 32.1 49 0.0011 25.6 2.9 45 132-176 69-114 (121)
151 PRK06139 short chain dehydroge 31.7 2.4E+02 0.0053 26.6 8.0 103 86-215 7-113 (330)
152 PF13692 Glyco_trans_1_4: Glyc 31.6 30 0.00065 26.9 1.6 46 134-183 86-131 (135)
153 TIGR00506 ribB 3,4-dihydroxy-2 31.6 46 0.001 30.4 3.0 54 96-150 135-192 (199)
154 PLN02884 6-phosphofructokinase 31.6 84 0.0018 31.6 5.1 62 35-115 104-165 (411)
155 PRK01792 ribB 3,4-dihydroxy-2- 31.5 45 0.00097 30.9 2.9 54 96-150 145-202 (214)
156 PRK06114 short chain dehydroge 31.5 2.9E+02 0.0064 24.0 8.0 87 85-198 7-94 (254)
157 PRK06512 thiamine-phosphate py 31.4 3.5E+02 0.0076 24.5 8.7 28 2-33 52-79 (221)
158 TIGR03811 tyr_de_CO2_Ent tyros 31.3 1E+02 0.0022 32.6 5.8 59 149-219 216-274 (608)
159 PRK09989 hypothetical protein; 31.1 2.3E+02 0.0051 25.3 7.5 92 132-227 41-139 (258)
160 TIGR00421 ubiX_pad polyprenyl 31.0 1.6E+02 0.0034 26.0 6.2 60 116-191 111-175 (181)
161 cd01425 RPS2 Ribosomal protein 30.9 2.4E+02 0.0052 25.0 7.4 85 127-226 29-151 (193)
162 PRK15473 cbiF cobalt-precorrin 30.9 2.1E+02 0.0045 26.2 7.2 115 75-201 117-238 (257)
163 PRK07109 short chain dehydroge 30.9 1.5E+02 0.0032 27.9 6.3 102 85-214 7-113 (334)
164 TIGR02764 spore_ybaN_pdaB poly 30.8 3.4E+02 0.0073 23.1 8.3 74 134-227 110-183 (191)
165 cd06349 PBP1_ABC_ligand_bindin 30.7 4.1E+02 0.009 24.1 9.5 35 117-152 65-99 (340)
166 PRK14072 6-phosphofructokinase 30.5 68 0.0015 32.1 4.2 86 19-115 31-125 (416)
167 PRK13125 trpA tryptophan synth 30.5 3.7E+02 0.0079 24.4 8.7 145 56-241 31-178 (244)
168 PRK09134 short chain dehydroge 30.3 2.9E+02 0.0063 24.0 7.8 16 85-100 8-23 (258)
169 PRK05926 hypothetical protein; 30.2 57 0.0012 32.0 3.6 23 77-100 211-233 (370)
170 PRK13210 putative L-xylulose 5 30.2 1.1E+02 0.0024 27.3 5.2 92 132-227 53-148 (284)
171 PRK10060 RNase II stability mo 30.0 2.4E+02 0.0052 29.2 8.3 81 5-93 538-618 (663)
172 CHL00067 rps2 ribosomal protei 29.8 2.2E+02 0.0047 26.3 7.1 26 188-226 160-185 (230)
173 PRK13530 arsenate reductase; P 29.4 2.2E+02 0.0047 23.6 6.5 88 119-216 31-120 (133)
174 PRK06111 acetyl-CoA carboxylas 29.4 4.4E+02 0.0096 25.5 9.5 67 74-148 62-131 (450)
175 PRK03731 aroL shikimate kinase 29.4 59 0.0013 27.0 3.1 77 68-148 11-99 (171)
176 KOG2250 Glutamate/leucine/phen 29.4 2.7E+02 0.0059 29.2 8.3 128 10-169 263-400 (514)
177 PRK07792 fabG 3-ketoacyl-(acyl 29.4 3.8E+02 0.0081 24.6 8.7 103 84-213 10-116 (306)
178 PRK00911 dihydroxy-acid dehydr 29.4 1.3E+02 0.0028 31.7 6.1 128 7-163 51-199 (552)
179 cd06340 PBP1_ABC_ligand_bindin 29.3 2.1E+02 0.0045 26.4 7.0 123 74-196 82-231 (347)
180 PRK13016 dihydroxy-acid dehydr 29.3 1.3E+02 0.0029 31.8 6.2 130 7-163 62-206 (577)
181 PRK05867 short chain dehydroge 29.0 3.2E+02 0.007 23.7 7.8 86 85-198 8-94 (253)
182 TIGR00110 ilvD dihydroxy-acid 28.6 1.4E+02 0.003 31.3 6.2 128 7-163 31-180 (535)
183 smart00842 FtsA Cell division 28.6 2.1E+02 0.0045 24.6 6.5 70 141-219 20-109 (187)
184 PF00205 TPP_enzyme_M: Thiamin 28.3 51 0.0011 26.7 2.5 51 110-160 5-61 (137)
185 PRK02615 thiamine-phosphate py 28.3 1.7E+02 0.0037 28.8 6.4 26 5-34 185-210 (347)
186 PF13192 Thioredoxin_3: Thiore 28.2 53 0.0011 24.3 2.4 27 18-46 43-74 (76)
187 cd02929 TMADH_HD_FMN Trimethyl 28.1 2.6E+02 0.0056 27.3 7.6 60 203-271 138-212 (370)
188 TIGR02321 Pphn_pyruv_hyd phosp 27.9 5.4E+02 0.012 24.6 10.2 160 78-245 27-204 (290)
189 PRK08154 anaerobic benzoate ca 27.7 58 0.0013 30.7 3.1 88 55-149 129-233 (309)
190 PF13407 Peripla_BP_4: Peripla 27.7 2.7E+02 0.0059 23.9 7.1 78 133-220 69-150 (257)
191 TIGR00007 phosphoribosylformim 27.6 3.6E+02 0.0079 23.7 8.0 17 80-96 183-199 (230)
192 PRK13394 3-hydroxybutyrate deh 27.6 4E+02 0.0086 22.9 8.8 87 84-198 5-92 (262)
193 cd04795 SIS SIS domain. SIS (S 27.5 44 0.00096 24.2 1.8 62 80-151 19-81 (87)
194 cd06259 YdcF-like YdcF-like. Y 27.5 1.2E+02 0.0026 24.7 4.6 95 105-226 22-119 (150)
195 TIGR03029 EpsG chain length de 27.5 54 0.0012 29.6 2.7 35 116-150 236-270 (274)
196 PF10609 ParA: ParA/MinD ATPas 27.5 59 0.0013 25.8 2.6 51 115-166 23-74 (81)
197 cd05537 POLBc_Pol_II DNA polym 27.4 77 0.0017 31.1 4.0 111 133-246 131-282 (371)
198 TIGR01518 g3p_cytidyltrns glyc 27.3 48 0.001 26.9 2.2 57 89-148 1-65 (125)
199 COG0394 Wzb Protein-tyrosine-p 27.1 1.6E+02 0.0034 25.0 5.3 96 116-219 27-129 (139)
200 COG1775 HgdB Benzoyl-CoA reduc 27.1 2.3E+02 0.005 28.6 7.1 95 122-216 237-347 (379)
201 COG0052 RpsB Ribosomal protein 27.0 2E+02 0.0043 27.5 6.4 46 129-176 39-106 (252)
202 TIGR02717 AcCoA-syn-alpha acet 27.0 4.1E+02 0.0089 26.5 9.0 128 53-198 235-379 (447)
203 cd06349 PBP1_ABC_ligand_bindin 26.9 3.6E+02 0.0077 24.5 8.0 118 77-194 82-220 (340)
204 PRK08305 spoVFB dipicolinate s 26.8 70 0.0015 29.0 3.3 38 117-154 121-159 (196)
205 PTZ00256 glutathione peroxidas 26.7 2.3E+02 0.005 24.4 6.4 30 124-153 53-83 (183)
206 PRK11478 putative lyase; Provi 26.6 70 0.0015 24.6 2.9 36 132-167 85-124 (129)
207 PF04481 DUF561: Protein of un 26.6 3.2E+02 0.0068 26.0 7.5 121 101-242 39-171 (242)
208 PRK11178 uridine phosphorylase 26.2 5.2E+02 0.011 23.8 13.3 161 37-198 23-218 (251)
209 TIGR01949 AroFGH_arch predicte 26.2 5E+02 0.011 23.6 11.2 86 79-187 162-249 (258)
210 TIGR01369 CPSaseII_lrg carbamo 26.1 3.2E+02 0.0069 30.5 8.7 149 75-229 70-279 (1050)
211 cd08239 THR_DH_like L-threonin 25.8 5.1E+02 0.011 23.6 9.6 69 77-147 178-259 (339)
212 cd04824 eu_ALAD_PBGS_cysteine_ 25.6 1.7E+02 0.0036 28.9 5.8 67 154-224 24-104 (320)
213 cd02812 PcrB_like PcrB_like pr 25.4 3.3E+02 0.0072 25.1 7.5 139 79-243 18-173 (219)
214 TIGR02691 arsC_pI258_fam arsen 25.3 1.6E+02 0.0034 24.3 4.9 43 120-162 27-69 (129)
215 TIGR03432 yjhG_yagF probable d 25.1 1.2E+02 0.0026 32.5 5.0 76 7-95 87-182 (640)
216 cd02803 OYE_like_FMN_family Ol 25.0 1.6E+02 0.0035 27.3 5.5 36 203-238 129-170 (327)
217 PRK00115 hemE uroporphyrinogen 25.0 2.9E+02 0.0062 26.3 7.2 29 117-151 239-267 (346)
218 cd00384 ALAD_PBGS Porphobilino 24.9 1.9E+02 0.0042 28.4 6.1 66 154-224 24-101 (314)
219 TIGR01859 fruc_bis_ald_ fructo 24.8 2.5E+02 0.0053 26.6 6.7 22 1-22 108-129 (282)
220 PRK00347 putative DNA-binding 24.7 40 0.00086 31.3 1.4 78 139-227 132-210 (234)
221 PF14601 TFX_C: DNA_binding pr 24.4 1.4E+02 0.0031 23.8 4.2 50 189-245 11-60 (84)
222 PRK00945 acetyl-CoA decarbonyl 24.3 66 0.0014 28.7 2.6 56 95-150 13-69 (171)
223 cd08294 leukotriene_B4_DH_like 24.3 2.8E+02 0.0062 24.8 6.8 68 77-147 159-238 (329)
224 PRK06523 short chain dehydroge 24.2 4.7E+02 0.01 22.6 8.9 17 84-100 7-23 (260)
225 TIGR01304 IMP_DH_rel_2 IMP deh 24.1 5.9E+02 0.013 25.3 9.4 18 4-21 115-132 (369)
226 PF03749 SfsA: Sugar fermentat 24.1 41 0.0009 30.8 1.3 78 139-227 118-196 (215)
227 cd02042 ParA ParA and ParB of 24.1 1.3E+02 0.0029 22.7 4.0 70 66-138 7-84 (104)
228 smart00822 PKS_KR This enzymat 24.0 1.1E+02 0.0023 23.9 3.6 11 88-98 2-12 (180)
229 TIGR02852 spore_dpaB dipicolin 23.9 93 0.002 28.0 3.5 39 117-155 116-155 (187)
230 PRK08662 nicotinate phosphorib 23.9 1.1E+02 0.0024 29.9 4.3 71 69-145 266-342 (343)
231 PF13380 CoA_binding_2: CoA bi 23.8 2.5E+02 0.0053 22.7 5.7 76 120-195 3-86 (116)
232 cd06388 PBP1_iGluR_AMPA_GluR4 23.7 2.4E+02 0.0053 27.0 6.6 126 69-198 70-215 (371)
233 PRK14071 6-phosphofructokinase 23.7 5.5E+02 0.012 25.2 9.1 91 13-114 27-128 (360)
234 cd05313 NAD_bind_2_Glu_DH NAD( 23.7 6.2E+02 0.013 23.8 11.7 133 12-169 52-188 (254)
235 PRK06701 short chain dehydroge 23.6 5.6E+02 0.012 23.3 8.7 50 86-144 46-95 (290)
236 cd06273 PBP1_GntR_like_1 This 23.6 4.7E+02 0.01 22.4 12.1 66 77-152 20-86 (268)
237 cd06334 PBP1_ABC_ligand_bindin 23.6 5E+02 0.011 24.3 8.5 59 91-151 32-97 (351)
238 PRK08463 acetyl-CoA carboxylas 23.6 5.3E+02 0.011 25.8 9.1 18 76-93 63-80 (478)
239 TIGR03137 AhpC peroxiredoxin. 23.3 2.1E+02 0.0046 24.7 5.6 55 128-182 49-109 (187)
240 PRK06128 oxidoreductase; Provi 23.3 5E+02 0.011 23.5 8.2 106 84-215 53-164 (300)
241 COG4529 Uncharacterized protei 23.3 2.9E+02 0.0063 28.7 7.2 103 119-258 198-301 (474)
242 PRK12823 benD 1,6-dihydroxycyc 23.2 4.9E+02 0.011 22.5 8.7 16 85-100 7-22 (260)
243 PRK08862 short chain dehydroge 23.2 3.8E+02 0.0083 23.5 7.3 87 85-198 4-91 (227)
244 TIGR03551 F420_cofH 7,8-dideme 23.2 2.5E+02 0.0055 26.7 6.5 182 35-259 135-328 (343)
245 cd04733 OYE_like_2_FMN Old yel 23.1 3.9E+02 0.0084 25.4 7.7 60 203-271 137-211 (338)
246 TIGR01273 speA arginine decarb 23.1 3.9E+02 0.0084 28.4 8.3 121 119-272 139-273 (624)
247 PRK11829 biofilm formation reg 23.0 2.8E+02 0.006 28.2 7.1 78 5-93 536-616 (660)
248 PRK01130 N-acetylmannosamine-6 23.0 1.6E+02 0.0035 25.9 4.8 66 80-151 133-202 (221)
249 cd02809 alpha_hydroxyacid_oxid 22.8 2.8E+02 0.0061 25.9 6.7 71 77-152 184-257 (299)
250 PRK06246 fumarate hydratase; P 22.8 2.3E+02 0.0049 27.3 6.1 54 205-264 4-60 (280)
251 cd05288 PGDH Prostaglandin deh 22.7 3.6E+02 0.0079 24.1 7.1 75 73-151 157-244 (329)
252 PRK07577 short chain dehydroge 22.7 4.7E+02 0.01 22.1 9.0 15 86-100 3-17 (234)
253 PRK05299 rpsB 30S ribosomal pr 22.7 3.5E+02 0.0076 25.4 7.2 26 188-226 156-181 (258)
254 PRK13561 putative diguanylate 22.6 3E+02 0.0064 28.1 7.2 75 5-93 531-611 (651)
255 PRK10124 putative UDP-glucose 22.5 5.8E+02 0.013 25.6 9.1 90 117-227 143-232 (463)
256 PHA03101 DNA topoisomerase typ 22.5 1.6E+02 0.0034 28.9 5.0 62 159-234 165-226 (314)
257 cd06360 PBP1_alkylbenzenes_lik 22.5 5.6E+02 0.012 22.9 9.8 19 133-151 78-96 (336)
258 TIGR03201 dearomat_had 6-hydro 22.5 2.6E+02 0.0057 25.9 6.4 74 76-151 180-274 (349)
259 cd04922 ACT_AKi-HSDH-ThrA_2 AC 22.4 1.3E+02 0.0028 20.6 3.4 31 120-150 4-35 (66)
260 PRK07069 short chain dehydroge 22.1 3.5E+02 0.0076 23.1 6.7 30 88-124 1-30 (251)
261 PF00208 ELFV_dehydrog: Glutam 22.0 1.4E+02 0.0031 27.5 4.5 134 10-169 44-181 (244)
262 PRK11260 cystine transporter s 21.9 98 0.0021 27.5 3.3 35 130-164 27-61 (266)
263 PRK07832 short chain dehydroge 21.9 4.1E+02 0.0088 23.5 7.2 23 88-116 2-24 (272)
264 cd02811 IDI-2_FMN Isopentenyl- 21.8 5.4E+02 0.012 24.6 8.5 78 72-155 189-288 (326)
265 PRK02427 3-phosphoshikimate 1- 21.8 7.2E+02 0.016 23.9 10.5 44 105-148 161-213 (435)
266 cd01537 PBP1_Repressors_Sugar_ 21.8 4.7E+02 0.01 21.7 10.1 35 117-153 54-88 (264)
267 cd03794 GT1_wbuB_like This fam 21.8 1.7E+02 0.0037 25.4 4.7 66 115-183 292-361 (394)
268 cd08295 double_bond_reductase_ 21.7 3.8E+02 0.0083 24.5 7.2 68 77-147 167-248 (338)
269 PRK13609 diacylglycerol glucos 21.6 5.1E+02 0.011 24.1 8.1 48 144-201 257-304 (380)
270 PLN02898 HMP-P kinase/thiamin- 21.6 2.7E+02 0.0058 28.0 6.6 24 6-33 336-359 (502)
271 PRK08213 gluconate 5-dehydroge 21.6 5.4E+02 0.012 22.3 8.0 36 84-126 10-45 (259)
272 PRK08643 acetoin reductase; Va 21.5 5.3E+02 0.012 22.2 8.7 30 88-124 4-33 (256)
273 PLN02335 anthranilate synthase 21.5 69 0.0015 28.9 2.2 31 120-150 65-97 (222)
274 PRK06198 short chain dehydroge 21.5 5.3E+02 0.012 22.2 8.6 74 84-183 4-77 (260)
275 PF04722 Ssu72: Ssu72-like pro 21.4 86 0.0019 28.8 2.8 30 119-153 3-35 (195)
276 TIGR01072 murA UDP-N-acetylglu 21.3 2.2E+02 0.0047 27.2 5.7 118 75-199 123-256 (416)
277 PRK08655 prephenate dehydrogen 21.3 92 0.002 31.0 3.2 62 9-73 288-377 (437)
278 TIGR03234 OH-pyruv-isom hydrox 21.2 4.6E+02 0.01 23.2 7.4 91 132-227 40-138 (254)
279 COG1798 DPH5 Diphthamide biosy 21.2 1.2E+02 0.0025 29.2 3.7 55 37-93 40-110 (260)
280 PRK13017 dihydroxy-acid dehydr 21.2 2.3E+02 0.0051 30.1 6.2 126 7-163 67-211 (596)
281 KOG1201 Hydroxysteroid 17-beta 21.2 7.4E+02 0.016 24.3 9.2 101 85-214 37-142 (300)
282 PRK04155 chaperone protein Hch 21.1 19 0.00041 34.2 -1.5 39 89-132 151-195 (287)
283 cd01391 Periplasmic_Binding_Pr 21.1 4.6E+02 0.01 21.3 9.1 33 118-152 58-90 (269)
284 cd06295 PBP1_CelR Ligand bindi 21.0 5.5E+02 0.012 22.2 9.8 63 77-153 31-96 (275)
285 TIGR00542 hxl6Piso_put hexulos 21.0 3E+02 0.0065 24.9 6.3 94 131-227 52-148 (279)
286 PRK08462 biotin carboxylase; V 20.9 5.2E+02 0.011 25.2 8.3 17 206-222 175-191 (445)
287 PF00926 DHBP_synthase: 3,4-di 20.8 1E+02 0.0022 28.0 3.2 46 105-150 138-187 (194)
288 PRK07985 oxidoreductase; Provi 20.8 6.4E+02 0.014 22.9 9.2 17 84-100 47-63 (294)
289 TIGR00288 conserved hypothetic 20.6 2.4E+02 0.0051 25.0 5.3 62 80-152 73-137 (160)
290 TIGR00587 nfo apurinic endonuc 20.6 6.6E+02 0.014 23.0 8.7 93 132-233 12-109 (274)
291 PLN02979 glycolate oxidase 20.6 2.3E+02 0.0051 28.3 5.8 102 32-152 204-308 (366)
292 cd00248 Mth938-like Mth938-lik 20.5 97 0.0021 25.1 2.7 34 119-152 54-87 (109)
293 PRK05294 carB carbamoyl phosph 20.5 4.7E+02 0.01 29.2 8.7 160 26-195 556-747 (1066)
294 TIGR01382 PfpI intracellular p 20.5 3.6E+02 0.0077 22.1 6.2 79 75-153 15-101 (166)
295 PF01070 FMN_dh: FMN-dependent 20.5 1.6E+02 0.0034 28.9 4.6 67 80-151 240-309 (356)
296 cd04823 ALAD_PBGS_aspartate_ri 20.4 2.5E+02 0.0053 27.8 5.8 67 154-224 27-106 (320)
297 PRK00885 phosphoribosylamine-- 20.4 3.1E+02 0.0067 26.6 6.6 17 134-150 104-120 (420)
298 cd02932 OYE_YqiM_FMN Old yello 20.3 1.2E+02 0.0026 28.7 3.7 30 203-232 142-174 (336)
299 PF07805 HipA_N: HipA-like N-t 20.3 55 0.0012 24.6 1.1 62 20-94 3-65 (81)
300 cd05282 ETR_like 2-enoyl thioe 20.2 3.6E+02 0.0078 23.9 6.5 67 74-147 151-234 (323)
301 PF03808 Glyco_tran_WecB: Glyc 20.1 3E+02 0.0065 23.6 5.8 84 67-202 29-114 (172)
302 cd01526 RHOD_ThiF Member of th 20.1 2.5E+02 0.0054 22.2 5.0 25 117-145 72-97 (122)
303 cd01653 GATase1 Type 1 glutami 20.1 3.1E+02 0.0067 19.0 5.0 70 74-153 13-88 (115)
No 1
>PF04227 Indigoidine_A: Indigoidine synthase A like protein; InterPro: IPR007342 Members of this entry catalyze the hydrolysis of pseudouridine 5'-phosphate (PsiMP) to ribose 5-phosphate and uracil. It is also reported to be involved in the synthesis of indigoidine, which is a blue pigment synthesised by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 1VKM_C.
Probab=100.00 E-value=1.9e-122 Score=857.90 Aligned_cols=269 Identities=65% Similarity=0.931 Sum_probs=208.9
Q ss_pred CCCchhHHHHHHHHHHHHHCCCcccEEEEEcCceeecCCHHHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHHHH
Q 023717 1 MPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMF 80 (278)
Q Consensus 1 lPyP~Nle~A~~~E~~vR~~GavPATIaii~G~i~VGl~~~el~~la~~~~~~~K~srRDl~~~~a~~~~GaTTVaaTm~ 80 (278)
||||+|+|||+++|++||++||+||||||+||+|+|||+++||++|++.++++.|+|||||++++++|++||||||+||+
T Consensus 25 lPyP~Nle~a~~~E~~vr~~GavPATIai~~G~i~vGl~~~ele~la~~~~~~~K~s~RDl~~~~a~~~~GaTTVsaTm~ 104 (293)
T PF04227_consen 25 LPYPQNLETAREVEEIVRSQGAVPATIAIIDGKIKVGLSEEELERLADAGKGVIKVSRRDLAYALAKGLSGATTVSATMI 104 (293)
T ss_dssp S-HHHHHHHHHHHHHHHHHHT-EEEEEEEETTEEEES--HHHHHHHHHH----EEE-GGGHHHHHHHT--EEE-HHHHHH
T ss_pred CCCChHHHHHHHHHHHHHhcCCCccEEEEECCeeEEcCCHHHHHHHHHhccCCeeecHhhHHHHHhCCCccHhHHHHHHH
Confidence 89999999999999999999999999999999999999999999999876789999999999999999999999999999
Q ss_pred HHHHCCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCcceee
Q 023717 81 FASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFT 160 (278)
Q Consensus 81 lA~~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~ 160 (278)
+||++||+||+||||||||||+++|||||+||+||+||||+|||||+|||||||+|||||||+||||+||+||+||+||+
T Consensus 105 lA~~aGI~VfaTGGiGGVHrga~~t~DiSaDL~eL~rtpv~VV~aG~KsILDi~~TLE~LET~GV~Vvgy~t~~fPaFy~ 184 (293)
T PF04227_consen 105 LAHLAGIKVFATGGIGGVHRGAEETFDISADLTELARTPVAVVCAGAKSILDIPKTLEYLETQGVPVVGYGTDEFPAFYT 184 (293)
T ss_dssp HHHHTT--EEE-S-B--B-TT---SS-B-HHHHHHTTS-EEEEESBB-TTS-HHHHHHHHHHTT--EEEES-SB--BTTB
T ss_pred HHHHcCCCEEEeCCcccCCCCCcCcchhhhHHHHHhcCCceEEEccCcchhchHHHHHHhhcCCeEEEEecCCCCCeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccCcccCCHHHHHHHHHHHHhcCCCCeEEEEeCCCccCCCChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHH
Q 023717 161 ETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVN 240 (278)
Q Consensus 161 ~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~~~i~~~i~~Al~ea~~~gi~Gk~vTPflL~~i~ 240 (278)
++||+++|||+||++|+|++++++|+||+++|+||+||||+|+++|+++|+++|++|++||+++||+||++|||||++|+
T Consensus 185 ~~Sg~~~~~~~d~~~e~A~~~~~~~~lgl~~g~lvanPiP~e~~~~~~~i~~~I~~Al~ea~~~gi~Gk~vTPfLL~~i~ 264 (293)
T PF04227_consen 185 RSSGFKSPYRVDSPEEAARIIRAHWQLGLPSGVLVANPIPEEDAIDGEEIESAIEQALAEAEEQGIRGKAVTPFLLARIN 264 (293)
T ss_dssp S--S-B---EE-SHHHHHHHHHHHHHTT--SEEEEE----GGG---HHHHHHHHHT-----------GGGHHHHHHHHHH
T ss_pred cCCCCCCCcccCCHHHHHHHHHHHHHhCCCCeEEEEccCChHhcCCHHHHHHHHHHHHhhHhhcCCCcccCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCccHHHHHHHHHHHHHHHHHHHHHH
Q 023717 241 ELTGGLSLASNIALVKNNALIGAKISVAL 269 (278)
Q Consensus 241 elT~G~Sl~aNiaLl~nNa~laa~IA~~~ 269 (278)
|+|+|+|+++|++||+|||++|+|||++|
T Consensus 265 e~T~G~Sl~aNialv~nNa~~aa~IA~~l 293 (293)
T PF04227_consen 265 ELTGGKSLEANIALVKNNARLAAQIAVAL 293 (293)
T ss_dssp HHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCccHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999987
No 2
>COG2313 IndA Uncharacterized enzyme involved in pigment biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.6e-120 Score=830.35 Aligned_cols=271 Identities=59% Similarity=0.858 Sum_probs=268.8
Q ss_pred CCCchhHHHHHHHHHHHHHCCCcccEEEEEcCceeecCCHHHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHHHH
Q 023717 1 MPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMF 80 (278)
Q Consensus 1 lPyP~Nle~A~~~E~~vR~~GavPATIaii~G~i~VGl~~~el~~la~~~~~~~K~srRDl~~~~a~~~~GaTTVaaTm~ 80 (278)
||||+|+|||+++|+++|++||||||||||+|+|+|||+++|||.|++. .++.|+|||||++++|+|++||||||+||+
T Consensus 39 MPypqn~ema~~ve~iiR~~GavpAtIaii~G~i~iGLs~eelE~la~~-~~a~KvsrrDl~~vvA~~~~gaTTVAaTMi 117 (310)
T COG2313 39 MPYPQNVEMAREVEEIIRDQGAVPATIAIIGGKIKIGLSKEELELLARE-GNAMKVSRRDLPFVVAEGKNGATTVAATMI 117 (310)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCcceeEEEeccEEEeecCHHHHHHHhhc-CccceeeccchHHHHhcCcCCcchHHHHHH
Confidence 8999999999999999999999999999999999999999999999987 489999999999999999999999999999
Q ss_pred HHHHCCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCcceee
Q 023717 81 FASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFT 160 (278)
Q Consensus 81 lA~~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~ 160 (278)
+|.++||+|||||||||||||+|+|||||+||+||+||+|+|||||+||||||++|||||||+||||+||+|++||+||+
T Consensus 118 ~A~~aGI~vfaTGGiGGVHrGAe~t~DISaDL~ELa~T~v~vV~AGaKsILDi~~TlE~LET~gVPvvg~~t~~fPaF~s 197 (310)
T COG2313 118 LAALAGIKVFATGGIGGVHRGAEHTFDISADLTELARTNVTVVCAGAKSILDIGLTLEVLETQGVPVVGYQTNEFPAFFS 197 (310)
T ss_pred HHHHcCceEEEecCcccccCCcccccccchhHHHHhcCCeEEEecCchhhhccHHHHHHHHhcCcceeecCCCcccchhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccCcccCCHHHHHHHHHHHHhcCCCCeEEEEeCCCccCCCChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHH
Q 023717 161 ETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVN 240 (278)
Q Consensus 161 ~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~~~i~~~i~~Al~ea~~~gi~Gk~vTPflL~~i~ 240 (278)
|+||+++|.|+++|+++|+++.++|+||+.+|+||+||+|++++||.++|+.+|++|+++|+++||+||++|||||++|.
T Consensus 198 R~Sg~~~pl~l~~pe~ia~~~~t~~~lglegg~lVaNPvPee~eip~eeie~~I~~a~~eae~~gi~GK~vTPfLLgkl~ 277 (310)
T COG2313 198 RESGFRVPLRLESPEEIARILATKWQLGLEGGLLVANPVPEEFEIPEEEIEALIERALAEAEALGITGKEVTPFLLGKLV 277 (310)
T ss_pred ccCCCcCccccCCHHHHHHHHHHHHHhCCCCceEEecCCchhccCCHHHHHHHHHHHHHHHHHcCCCccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023717 241 ELTGGLSLASNIALVKNNALIGAKISVALAQL 272 (278)
Q Consensus 241 elT~G~Sl~aNiaLl~nNa~laa~IA~~~~~~ 272 (278)
|+|+|+||++||+||+|||++|++||++|+++
T Consensus 278 elT~GrSL~tNIaLv~nNa~laa~IAv~l~~l 309 (310)
T COG2313 278 ELTGGRSLKTNIALVENNAILAAEIAVALARL 309 (310)
T ss_pred HHhCCccHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999985
No 3
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=100.00 E-value=1.5e-89 Score=666.78 Aligned_cols=274 Identities=59% Similarity=0.857 Sum_probs=270.1
Q ss_pred CCCchhHHHHHHHHHHHHHCCCcccEEEEEcCceeecCCHHHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHHHH
Q 023717 1 MPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMF 80 (278)
Q Consensus 1 lPyP~Nle~A~~~E~~vR~~GavPATIaii~G~i~VGl~~~el~~la~~~~~~~K~srRDl~~~~a~~~~GaTTVaaTm~ 80 (278)
||||+|+++|..+|+.||++||+||||+++||+++|||+++||+.||..++.++|+||||++++++++++|||||++||.
T Consensus 54 mPyp~nl~tA~~veq~vrs~GaipaTialldg~~kiGLt~e~L~~La~~g~~~~kvsrRD~~~v~i~rlvggTtvaaTm~ 133 (614)
T KOG3009|consen 54 MPYPQNLSTATVVEQKVRSNGAIPATIALLDGIIKIGLTPEELETLASSGPSAVKVSRRDIASVVIVRLVGGTTVAATMI 133 (614)
T ss_pred CcCCcccccccchhhhhhcCCCcchhhhhhcceeeecCCHHHHHHHhhcCccccccccccccccceeeecCCcchhhhhh
Confidence 89999999999999999999999999999999999999999999999987779999999999999999999999999999
Q ss_pred HHHHCCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCC--Ccce
Q 023717 81 FASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNE--FPAF 158 (278)
Q Consensus 81 lA~~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~--fPaF 158 (278)
+||++||.|||||||||||||++++||+|+||+||+||||+|||+|+|||||||+||||||||||+|++|+++. ||+|
T Consensus 134 iA~~~gI~vfaTggiggvhr~An~smdisadl~elgrtpvavv~agvksiLdip~tle~letq~V~vvtlgs~gavfpsf 213 (614)
T KOG3009|consen 134 IAHAAGIVVFATGGIGGVHRGANQSMDISADLTELGRTPVAVVSAGVKSILDIPKTLEYLETQGVVVVTLGSPGAVFPSF 213 (614)
T ss_pred hcccceEEEEecCCcchhhhccccccchhhhhhhhcCCcceEEecchhhhccchhhhhhhccccEEEEEeCCCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887 9999
Q ss_pred eecCCCCccCcccCCHHHHHHHHHHHHhcCCCCeEEEEeCCCccCCCChHHHHHHHHHHHHHHHHcCCCCccCChHHHHH
Q 023717 159 FTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLAR 238 (278)
Q Consensus 159 y~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~~~i~~~i~~Al~ea~~~gi~Gk~vTPflL~~ 238 (278)
|+|+|++++|+++++++|++++++.+..|+.+.|.|+++|||+.|++|...|+++|++|+++|.++||.||.||||+|++
T Consensus 214 ftrks~~~~p~~~~s~~ev~k~l~S~~~l~~~~g~L~a~piP~~fAad~~~Ieaaik~at~~a~~q~itG~~VTpflla~ 293 (614)
T KOG3009|consen 214 FTRKSGCKAPRKLESPQEVAKLLQSNVCLGNEFGTLGAIPIPEHFAADGPKIEAAIKKATQEAREQNITGKTVTPFLLAR 293 (614)
T ss_pred cCcccccCCccccCCHHHHHHHHhhccccCcccceeeccCChHHhhccchhHHHHHHHHHHHHHHhcccccccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023717 239 VNELTGGLSLASNIALVKNNALIGAKISVALAQLRQ 274 (278)
Q Consensus 239 i~elT~G~Sl~aNiaLl~nNa~laa~IA~~~~~~~~ 274 (278)
+.++|.|.|+.+|||||+|||.++.|||.+|..++.
T Consensus 294 vl~~t~g~slasniAlVenna~va~~ia~~L~~~k~ 329 (614)
T KOG3009|consen 294 VLELTLGVSLASNIALVENNANVASQIAADLCDLKN 329 (614)
T ss_pred HHHHhhcchhHHHHHHHhccccchHHHHHHHhcccc
Confidence 999999999999999999999999999999988654
No 4
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=91.88 E-value=3.9 Score=41.37 Aligned_cols=191 Identities=18% Similarity=0.129 Sum_probs=127.5
Q ss_pred ecCCHHHHHHHHhc---CCCcccccc----cchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCCcccccc
Q 023717 36 VGLSTEELERLAKL---GSKAQKTAR----RDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDI 108 (278)
Q Consensus 36 VGl~~~el~~la~~---~~~~~K~sr----RDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrg~~~t~Di 108 (278)
=|++.+|+..|++. .......+. ..+-..++.|..|--+--....++..+|++|-=+||=|=-|.++
T Consensus 48 kG~t~~Ei~~lt~aM~~sg~~i~~~~~~~~~~~vDkhgTGGdG~niSt~~apivAA~Gv~VaKhgnR~iss~~G------ 121 (437)
T TIGR02643 48 NGMNRDERVALTLAMRDSGDVLDWRSLDLNGPVVDKHSTGGVGDVVSLMLGPIVAACGGYVPMISGRGLGHTGG------ 121 (437)
T ss_pred cCCCHHHHHHHHHHHHHhCCcccCcccccCCCeeEecCCCCCCcchhHHHHHHHHhCCCCeeeecCCCcCCCCc------
Confidence 37999999999762 112333341 22334455566666333356788899999999999877667777
Q ss_pred ccchhhhcCCCeEEEec-ccccccchhhhHhHhhhCCeeEEeecCCCCcc---eeecCCCCccCcccCCHHHHHHHHHHH
Q 023717 109 SSDLTELGRTPVAVVSA-GIKSILDIPRTLEYLETHGVCVAAYKTNEFPA---FFTETSGSKVPCRVDSPEDCARLIDVN 184 (278)
Q Consensus 109 SaDL~eL~rtpV~VVca-G~KsILDi~~TLE~LET~GV~V~gy~t~~fPa---Fy~~~Sg~~~~~r~d~~~e~A~~~~~~ 184 (278)
|+|..| +- |.+-=|+.....+.|+..|..++|...+--|+ +|--+ .++..+||.-.++.-|.++
T Consensus 122 TaD~LE---------alpG~~v~ls~e~~~~~l~~~g~~f~gqa~~l~PADk~ly~lR---Dvt~tVds~pLi~aSImSK 189 (437)
T TIGR02643 122 TLDKLE---------AIPGYDIFPDPALFRRVVKDVGVAIIGQTADLAPADKRFYATR---DVTATVESIPLITASILSK 189 (437)
T ss_pred hHHHHH---------hCCCCCCCCCHHHHHHHHHHcCceEEccCCCcCcchhceeeee---eecCCCCcHHHHHHHHHHH
Confidence 566665 33 77777888899999999999999877777777 44321 3667899988888877777
Q ss_pred HhcCCCCeEEEEeCCCccCCCChHHHHHHHHHHH-HHHHHcCCC------------CccCChHH--HHHHHHHhC
Q 023717 185 MKLKLGSGLVIGVPIPREHAASGRVIESAIQSAL-REAREKNIT------------GNAETPFL--LARVNELTG 244 (278)
Q Consensus 185 ~~l~l~~g~lvanPiP~e~~~~~~~i~~~i~~Al-~ea~~~gi~------------Gk~vTPfl--L~~i~elT~ 244 (278)
+--.-...+|+=+|+=.---+...+--+-+.+.+ +-++..|++ |..+=|+| ...|.-|.+
T Consensus 190 KlA~g~d~ivlDVk~G~gAfmk~~~~A~~LA~~mv~ig~~~g~~~~a~iTdm~qPlG~~iGnalEv~Eai~~L~g 264 (437)
T TIGR02643 190 KLAAGLDALVMDVKVGNGAFMPTYEESEELARSLVDVANGAGVRTTALITDMNQPLASAAGNAVEVRNAVDFLTG 264 (437)
T ss_pred HHHcCCCeEEEEcCcCCCCcCCCHHHHHHHHHHHHHHHHHcCCeEEEEECCCCCccccccCcHHHHHHHHHHHCC
Confidence 7766688899999997765555433333344433 334455653 66666764 333444443
No 5
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=89.48 E-value=4.9 Score=40.68 Aligned_cols=184 Identities=17% Similarity=0.098 Sum_probs=112.2
Q ss_pred cCCHHHHHHHHhc---CCCcccccccchH----HHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCCccccccc
Q 023717 37 GLSTEELERLAKL---GSKAQKTARRDIA----HVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDIS 109 (278)
Q Consensus 37 Gl~~~el~~la~~---~~~~~K~srRDl~----~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrg~~~t~DiS 109 (278)
|+|.+|+..|++. .......+..|+. ..++.|..|-.+--....++..+|++|.=+||=|=-|.++ |
T Consensus 50 G~t~eEi~~lt~Am~~sg~~i~~~~~d~~~~~vDkhgTGGdG~niS~~~a~ivAa~Gv~VaKhg~R~lss~~G------T 123 (440)
T PRK05820 50 GMTRPERVALTLAMRDSGEVLDWSSLNLNGPIVDKHSTGGVGDKISLMLAPMVAACGGYVPMISGRGLGHTGG------T 123 (440)
T ss_pred CCCHHHHHHHHHHHHHhCCcCCCccccCCCCeEEEcCCCCCCccHHHHHHHHHHhCCCCEEeeCCCCCCCccc------H
Confidence 8999999998752 1123333432222 2233444455333344667777999999999876557766 7
Q ss_pred cchhhhcCCCeEEEec-ccccccchhhhHhHhhhCCeeEEeecCCCCcceeecCCCCccCcccCCHHHHHHHHHHHHhcC
Q 023717 110 SDLTELGRTPVAVVSA-GIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLK 188 (278)
Q Consensus 110 aDL~eL~rtpV~VVca-G~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~ 188 (278)
+|..| +- |.+-=++...-.+.|+..|+.+++-..+..|++=.--.=-.+...+||.-.++.-|.+++---
T Consensus 124 aD~LE---------~LpG~~v~ls~e~~~~~l~~~G~~~~~~~~~l~PAdk~l~~lRdvt~tvds~pli~aSImSKK~A~ 194 (440)
T PRK05820 124 LDKLE---------AIPGYRAFPSNDRFREILKDVGVAIIGQTSDLAPADKRLYALRDVTATVESIPLITASILSKKLAE 194 (440)
T ss_pred HHHHH---------hCCCCCCCCCHHHHHHHHHHcCeEEEcCchhcChHHHHHHHHhcccCCCChHHHHHHHHHHHHHHc
Confidence 77766 33 666678888889999999966664334778876432221235678898877665555554443
Q ss_pred CCCeEEEEeCCCccCCCChHHHHHHHHHHH-HHHHHcCCC------------CccCChHH
Q 023717 189 LGSGLVIGVPIPREHAASGRVIESAIQSAL-REAREKNIT------------GNAETPFL 235 (278)
Q Consensus 189 l~~g~lvanPiP~e~~~~~~~i~~~i~~Al-~ea~~~gi~------------Gk~vTPfl 235 (278)
-...+|+=+|.=.---+...+--+-+.+.+ +-++..|++ |..+=|+|
T Consensus 195 G~~~lvlDVk~G~gAfmkt~~~A~~La~~mv~ig~~~g~~~~a~lTdm~qPlG~~iGnal 254 (440)
T PRK05820 195 GLDALVLDVKVGSGAFMKTYEEARELARSMVEVANGAGVRTTALLTDMNQPLASSAGNAL 254 (440)
T ss_pred CCCeEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEccCCCcccCccchHH
Confidence 348999999987655554322223333333 334455653 66666665
No 6
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=88.92 E-value=5.6 Score=39.83 Aligned_cols=176 Identities=17% Similarity=0.096 Sum_probs=108.1
Q ss_pred cCCHHHHHHHHhc-CCCcccccccc----hHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCCccccccccc
Q 023717 37 GLSTEELERLAKL-GSKAQKTARRD----IAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSD 111 (278)
Q Consensus 37 Gl~~~el~~la~~-~~~~~K~srRD----l~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrg~~~t~DiSaD 111 (278)
|+|.+|+..|++. .+...++.-.+ +-.-++.|..|-.+-.....++..+|++|.=.||=|=-|.++ |+|
T Consensus 47 GeT~eEi~g~t~Am~~~~~~l~~~~~~~~~vD~~gTGGdG~~iSt~~a~ivAa~Gv~VaKhgnR~lss~~G------TaD 120 (405)
T TIGR02644 47 GMTDEETAYLTKAMIDSGEVLDLSSLPGPKVDKHSTGGVGDKVSLVLGPIVAACGVKVAKMSGRGLGHTGG------TID 120 (405)
T ss_pred CCCHHHHHHHHHHHHHhCCcCCCcccCCCeeEEeCCCCCCCCchHHHHHHHHhCCCCEEeeCCCCCCCcch------HHH
Confidence 7999999988753 11122222111 222233444444333345677778999999999887667766 777
Q ss_pred hhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCcceeecCCCCccCcccCCHHHHHHHHHHHHhcCCCC
Q 023717 112 LTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGS 191 (278)
Q Consensus 112 L~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~ 191 (278)
..|-- .|.+-=|+...-.+.|+..|+..++-..+-+|+--.--.=-++...+|+.-.++.-+.+++--.-..
T Consensus 121 ~LE~l--------gG~~v~ls~e~~~~~l~~~G~~fl~~~~~l~PAdk~l~~lRd~~~Tv~sipLi~aSimSKK~A~G~~ 192 (405)
T TIGR02644 121 KLESI--------PGFRTELSEAEFIEIVNKVGLAIIGQTKDLAPADKKLYALRDVTGTVDSIPLIASSIMSKKLAAGAD 192 (405)
T ss_pred HHHhc--------CCCCCCCCHHHHHHHHHHcCeEEecCccccCcchhHHHHHhhcccccCcHHHHHHHHHHHHHhcCCC
Confidence 66621 1355567778888999999999974444788874311111112336777766654444444433458
Q ss_pred eEEEEeCCCccCCCChHHHHHHHHHHH-HHHHHcCC
Q 023717 192 GLVIGVPIPREHAASGRVIESAIQSAL-REAREKNI 226 (278)
Q Consensus 192 g~lvanPiP~e~~~~~~~i~~~i~~Al-~ea~~~gi 226 (278)
.+|+-+|+=.---+...+.-+.+.+.+ +-++..|+
T Consensus 193 ~~vlDVk~G~gAfm~~~e~a~~LA~~~~~~g~~~g~ 228 (405)
T TIGR02644 193 AIVLDVKVGSGAFMKTLEDAKELAKLMVEIGKGAGR 228 (405)
T ss_pred eEEEeecccCCCCcCCHHHHHHHHHHHHHHHHHcCC
Confidence 899999987776665555555566665 44556676
No 7
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional
Probab=85.69 E-value=4 Score=39.26 Aligned_cols=149 Identities=22% Similarity=0.295 Sum_probs=81.6
Q ss_pred cCCHHHHHHHHhc-CCCcccccccc-hHHHHhcCCCchhhHH---HHHHHHHHCCCcEEEecccccccCCCccccccccc
Q 023717 37 GLSTEELERLAKL-GSKAQKTARRD-IAHVVATRGNGATTVS---ATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSD 111 (278)
Q Consensus 37 Gl~~~el~~la~~-~~~~~K~srRD-l~~~~a~~~~GaTTVa---aTm~lA~~aGI~VFaTGGIGGVHrg~~~t~DiSaD 111 (278)
|.|.+||.-+.+. .+...++..-| .-..+..+.+|.-|.- ...+++..+|++|+-.|+=+=-++.+ |+|
T Consensus 49 get~~El~g~~~a~~~~~~~~~~~~~~iDi~gtggdg~~t~nis~~~a~vlA~~G~~V~kHG~~~~~s~~G------sad 122 (339)
T PRK00188 49 GETVDEIAGAARAMREHAVPVPDPDDAVDIVGTGGDGANTFNISTAAAFVAAAAGVKVAKHGNRSVSSKSG------SAD 122 (339)
T ss_pred CCCHHHHHHHHHHHHHhCCcCCCCCCCCcccCCCCCCCCccchHHHHHHHHHhCCCEEEEECCCCCCCCcC------HHH
Confidence 6689999888652 12222333222 1112355556654422 45677788899999999644333322 455
Q ss_pred hhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCcceeecCCCCccCcccCCHHHHHHHHHHHHhcCCCC
Q 023717 112 LTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGS 191 (278)
Q Consensus 112 L~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~ 191 (278)
+-|-= |.+--++.....+.|+.+|+.-+ |..+.+|+| .+++..++.||+++
T Consensus 123 vLe~l---------Gi~~~~~~~~~~~~l~~~g~~fl-~a~~~~P~l-------------------~~l~~lR~~Lg~Rt 173 (339)
T PRK00188 123 VLEAL---------GVNLDLSPEQVARCLEEVGIGFL-FAPLYHPAM-------------------KHVAPVRKELGIRT 173 (339)
T ss_pred HHHHc---------CCCCCCCHHHHHHHHHHcCcEEe-eCcccCHHH-------------------HHHHHHHHHhCCCC
Confidence 55522 33333455555666666665443 333444444 35666778888776
Q ss_pred e----EEEEeCCCccCCCCh---HHHHHHHHHHHHH
Q 023717 192 G----LVIGVPIPREHAASG---RVIESAIQSALRE 220 (278)
Q Consensus 192 g----~lvanPiP~e~~~~~---~~i~~~i~~Al~e 220 (278)
- -=+.||...++.+-+ ........++++.
T Consensus 174 ~fN~l~~L~NP~~~~~~v~Gv~h~~~~~~~a~~l~~ 209 (339)
T PRK00188 174 IFNLLGPLTNPARPKRQLIGVYSPDLLEPMAEVLKR 209 (339)
T ss_pred HHHHHHHhcCCCCCCCEEEeecCHHHHHHHHHHHHH
Confidence 3 135677777776653 2333444555543
No 8
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=85.50 E-value=6.9 Score=40.24 Aligned_cols=180 Identities=18% Similarity=0.177 Sum_probs=118.1
Q ss_pred cCCHHHHHHHHhc---CCCcccccccchHHHHhcCCC-ch-hhHHHHHHHHHHCCCcEEEecccccccCCCccccccccc
Q 023717 37 GLSTEELERLAKL---GSKAQKTARRDIAHVVATRGN-GA-TTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSD 111 (278)
Q Consensus 37 Gl~~~el~~la~~---~~~~~K~srRDl~~~~a~~~~-Ga-TTVaaTm~lA~~aGI~VFaTGGIGGVHrg~~~t~DiSaD 111 (278)
|++.+|+..|++. .....+.+...+-..+..|.. |- |+++ ...+...+|++|-=+||=|=-|.++ |+|
T Consensus 132 G~t~~Ei~~lt~AM~~sg~~l~~~~~~~vDkhgTGGd~gnk~ni~-~apIvAA~Gv~VaKhsnRaits~sG------TAD 204 (493)
T TIGR02645 132 GMTMDEIEALTIAMADTGEMLEWDREPIMDKHSIGGVPGNKTSLI-VVPIVAAAGLLIPKTSSRAITSAAG------TAD 204 (493)
T ss_pred CCCHHHHHHHHHHHHHhCCCccCCCCCeEEEeCCCCCCCCCEeHH-HHHHHHhCCCCeeeeCCCCcCCCcc------HHH
Confidence 7999999998752 112333343222222333333 33 3454 5556689999999999877777877 667
Q ss_pred hhh-hcCCCeEEEecccccccchhhhHhHhhhCCee-EEeecCCCCcceeecCCCCccCcccCCHHHHHHHHHHHHhcCC
Q 023717 112 LTE-LGRTPVAVVSAGIKSILDIPRTLEYLETHGVC-VAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKL 189 (278)
Q Consensus 112 L~e-L~rtpV~VVcaG~KsILDi~~TLE~LET~GV~-V~gy~t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l 189 (278)
..| | | +-=|+.....+.||..|.+ +.|-..+.-|++=. =..++-+..+||.-.++.-|.+++----
T Consensus 205 ~LE~L----------g-~v~ls~e~~~~~ve~~G~~fl~G~a~~l~PAdk~-i~~vR~~l~vds~~li~aSImSKKlA~G 272 (493)
T TIGR02645 205 TMEVL----------T-RVALSAEEIKRIVEKVGGCLVWGGALNLAPADDV-LIRVERPLSIDPRAQMLASIMSKKIAAG 272 (493)
T ss_pred HHHHh----------c-CCCCCHHHHHHHHHHCCEEEEECCCcccCHHHHH-HHHHHhhcCCCcHHHHHHHHHHHHHhcC
Confidence 666 3 3 3448888999999999998 55555666777521 1122225678998888777777766666
Q ss_pred CCeEEEEeCCCccCCCChHHHHHHHHHHHHH-HHHcCCC------------CccCChHH
Q 023717 190 GSGLVIGVPIPREHAASGRVIESAIQSALRE-AREKNIT------------GNAETPFL 235 (278)
Q Consensus 190 ~~g~lvanPiP~e~~~~~~~i~~~i~~Al~e-a~~~gi~------------Gk~vTPfl 235 (278)
...+|+=+|+=.---+...+--+-+.+.+.+ +++.|++ |+.+=|.|
T Consensus 273 ~~~lvlDvk~G~gAf~~~~~~A~~La~~~~~vg~~~G~~~~a~iTdm~qPlG~~iGnal 331 (493)
T TIGR02645 273 STHVLIDIPVGPGAKVRSLQEAERLARLFIELGDRLGVRVECAITYGSQPIGRGIGPAL 331 (493)
T ss_pred CCeEEEeccccCCCcCCCHHHHHHHHHHHHHHHHHcCCeEEEEECCCCCccccccCcHH
Confidence 7889999999777666655555555555443 4555663 77788876
No 9
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=85.19 E-value=12 Score=37.84 Aligned_cols=165 Identities=18% Similarity=0.170 Sum_probs=103.7
Q ss_pred cCCHHHHHHHHhc-CCCcccccccc----hHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCCccccccccc
Q 023717 37 GLSTEELERLAKL-GSKAQKTARRD----IAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSD 111 (278)
Q Consensus 37 Gl~~~el~~la~~-~~~~~K~srRD----l~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrg~~~t~DiSaD 111 (278)
|++.+|+..|++. .+...++...+ +-..++.|..|--|.=...+++..+|++|-=+||=|=-|.++ |+|
T Consensus 49 G~t~~Ei~~lt~aM~~sg~~~~~~~~~~~~vD~~gTGGdG~kt~ni~a~ivAA~Gv~VaKhgnR~lss~~G------TaD 122 (434)
T PRK06078 49 DMTDRERADLTMAMVNSGDTIDLSAIEGIKVDKHSTGGVGDTTTLVLAPLVAAFGVPVAKMSGRGLGHTGG------TID 122 (434)
T ss_pred CCCHHHHHHHHHHHHHhCCcccCcccCCCeeEecCCCCCCCCchHHHHHHHHcCCCCeeeeCCCCcCCCcc------hHH
Confidence 8999999999762 11122332212 333455566666565567788889999999999976668887 566
Q ss_pred hhhhcCCCeEEEec-ccccccchhhhHhHhhhCCeeEEeecCCCCcce---e-ecCCCCccCcccCCHHHHH-HHHHHHH
Q 023717 112 LTELGRTPVAVVSA-GIKSILDIPRTLEYLETHGVCVAAYKTNEFPAF---F-TETSGSKVPCRVDSPEDCA-RLIDVNM 185 (278)
Q Consensus 112 L~eL~rtpV~VVca-G~KsILDi~~TLE~LET~GV~V~gy~t~~fPaF---y-~~~Sg~~~~~r~d~~~e~A-~~~~~~~ 185 (278)
..| +- |.+-=|+...-.+.|+..|+.+++-..+.-|++ | .|+ +...+|+.--++ .|+.-+-
T Consensus 123 ~LE---------~lpG~~~~ls~e~~~~~l~~~G~~fl~~a~~~~PAdk~v~~lR~----v~~t~n~lPLi~~SImSKKl 189 (434)
T PRK06078 123 KLE---------SIKGFHVEISQEDFIKLVNENKVAVIGQSGNLTPADKKLYALRD----VTATVNSIPLIASSIMSKKI 189 (434)
T ss_pred HHH---------hCCCCCCCCCHHHHHHHHHHhCcEEEccCCCcChhhhhhHHHhc----cccccChHHhhhhHhhhhhh
Confidence 655 33 778888999999999999999995446666774 2 232 111255543333 4444444
Q ss_pred hcCCCCeEEEEeCCCccCCCChHHHHHHHHHHHHHH
Q 023717 186 KLKLGSGLVIGVPIPREHAASGRVIESAIQSALREA 221 (278)
Q Consensus 186 ~l~l~~g~lvanPiP~e~~~~~~~i~~~i~~Al~ea 221 (278)
..| +..+|+-++.=.---+...+.-+.+.+++.+-
T Consensus 190 Aag-~~~~vldV~~G~gAfm~~~~~a~~lA~~l~~l 224 (434)
T PRK06078 190 AAG-ADAIVLDVKTGAGAFMKTVEDAEELAHAMVRI 224 (434)
T ss_pred hcC-CCeEEEeeecCCCCCCCCHHHHHHHHHHHHHH
Confidence 444 56677777755554454444455555555443
No 10
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=85.05 E-value=4.8 Score=38.58 Aligned_cols=149 Identities=25% Similarity=0.341 Sum_probs=85.6
Q ss_pred cCCHHHHHHHHhc-CCCcccccc---cchHHHHhcCCCchhh---HHHHHHHHHHCCCcEEEecccccccCCCccccccc
Q 023717 37 GLSTEELERLAKL-GSKAQKTAR---RDIAHVVATRGNGATT---VSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDIS 109 (278)
Q Consensus 37 Gl~~~el~~la~~-~~~~~K~sr---RDl~~~~a~~~~GaTT---VaaTm~lA~~aGI~VFaTGGIGGVHrg~~~t~DiS 109 (278)
|.|.+||.-+++. .+...++.. .++-..+..+.+|--| -....+++..+|+||+-.|+=+=-.+-+ |
T Consensus 43 get~~Elag~~~a~~~~~~~~~~~~~~~~iD~~gtggdg~~t~nist~~a~vlA~~G~~V~kHG~r~~~s~~G------s 116 (330)
T TIGR01245 43 GETPEEITGFAKAMREHAVKVPGRPVEDLVDIVGTGGDGANTINISTASAFVAAAAGVKVAKHGNRSVSSKSG------S 116 (330)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCccCCCcccccCCCCCCCCccccHHHHHHHHHhCCCEEEEeCCCCCCCCcc------H
Confidence 7789999888752 122233322 1222234555556544 2245667778899999999633211111 4
Q ss_pred cchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCcceeecCCCCccCcccCCHHHHHHHHHHHHhcCC
Q 023717 110 SDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKL 189 (278)
Q Consensus 110 aDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l 189 (278)
+|+-| +-|.+--++.....+.||.+|+..+. ..+.+|++ .+++..++.||+
T Consensus 117 ~d~le---------~LGi~~~~s~~~~~~~l~~~g~~f~~-~~~~~P~~-------------------~~l~~lR~~lg~ 167 (330)
T TIGR01245 117 ADVLE---------ALGVNLDLGPEKVARSLEETGIGFLF-APLYHPAM-------------------KHVAPVRRELGV 167 (330)
T ss_pred HHHHH---------HcCCCCCCCHHHHHHHHHHhCcEEee-chhhCHHH-------------------HHHHHHHHHhCC
Confidence 56555 23444445666777778888876653 33444443 466777788887
Q ss_pred CCeE----EEEeCCCccCCCCh---HHHHHHHHHHHHH
Q 023717 190 GSGL----VIGVPIPREHAASG---RVIESAIQSALRE 220 (278)
Q Consensus 190 ~~g~----lvanPiP~e~~~~~---~~i~~~i~~Al~e 220 (278)
++-+ =+.||...++.+-+ ....+...++++.
T Consensus 168 rT~~N~lgpL~NP~~~~~~v~Gv~~~~~~~~~a~~~~~ 205 (330)
T TIGR01245 168 RTVFNLLGPLTNPARPKYQVIGVYDPDLVEVMAEALKN 205 (330)
T ss_pred CCHHHHHHHhcCCCCCCCEEEcccCHHHHHHHHHHHHH
Confidence 7642 35678777766544 3344444555544
No 11
>PRK04350 thymidine phosphorylase; Provisional
Probab=82.93 E-value=10 Score=38.90 Aligned_cols=186 Identities=18% Similarity=0.176 Sum_probs=120.4
Q ss_pred ecCCHHHHHHHHhc---CCCcccccccchHHHHhcCCC-chhhHHHHHHHHHHCCCcEEEecccccccCCCccccccccc
Q 023717 36 VGLSTEELERLAKL---GSKAQKTARRDIAHVVATRGN-GATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSD 111 (278)
Q Consensus 36 VGl~~~el~~la~~---~~~~~K~srRDl~~~~a~~~~-GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrg~~~t~DiSaD 111 (278)
=|++.+|+..|++. .......+...+-.-+..|.. |.||--....+...+|++|-=+||=|=-|.++ |+|
T Consensus 126 kG~t~~Ei~~lt~AM~~~g~~l~~~~~~~vDkhgTGGd~g~t~S~~~apivAA~Gv~VaKhgnRaiss~sG------TaD 199 (490)
T PRK04350 126 NGLDMDEIEALTRAMVETGERLDWDRPPVVDKHSIGGVPGNRTTLIVVPIVAAAGLTIPKTSSRAITSPAG------TAD 199 (490)
T ss_pred cCCCHHHHHHHHHHHHHhCCcccCCCCCeEEecCCCCCCCCCEeHHHHHHHHhCCCceeeecCCCCCCCCc------hHH
Confidence 48999999998752 112233343333333344444 33332224455689999999999966667777 667
Q ss_pred hhh-hcCCCeEEEecccccccchhhhHhHhhhCCeeEE-eecCCCCcceeecCCCCccCcccCCHHHHHHHHHHHHhcCC
Q 023717 112 LTE-LGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVA-AYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKL 189 (278)
Q Consensus 112 L~e-L~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~-gy~t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l 189 (278)
..| |+ +-=|+.....+.||..|.+.+ |=..+.-|++=.- ..++=+..+||.-.++.=|..++----
T Consensus 200 ~LEaLg-----------~v~ls~e~~~~~l~~~G~~flfG~a~~l~PAdk~l-~~vR~~l~vds~~li~aSImSKKlA~G 267 (490)
T PRK04350 200 TMEVLA-----------PVDLSVEEIKRVVEKVGGCLVWGGAVNLSPADDIL-IRVERPLSIDPRGQLVASILSKKIAAG 267 (490)
T ss_pred HHHHhh-----------cCCCCHHHHHHHHHHcCEEEEECCccccCHHHHHH-HHHhhhcCCCcHHHHHHHHhhhHhhcC
Confidence 555 43 333778888999999998776 4345666764210 111223568888887776666665555
Q ss_pred CCeEEEEeCCCccCCCChHHHHHHHHHHHHH-HHHcCCC------------CccCChHHHHHH
Q 023717 190 GSGLVIGVPIPREHAASGRVIESAIQSALRE-AREKNIT------------GNAETPFLLARV 239 (278)
Q Consensus 190 ~~g~lvanPiP~e~~~~~~~i~~~i~~Al~e-a~~~gi~------------Gk~vTPflL~~i 239 (278)
...+|+=+|.=...-+...+.-+.+.+.+.+ +++.|+. |..+-|.|-.+.
T Consensus 268 ~~~lvlDVp~G~ga~v~~~~~A~~LA~~~~~vg~~~g~~v~a~lTd~~qPlG~~iGnalEv~e 330 (490)
T PRK04350 268 STHVVIDIPVGPTAKVRSVEEARRLARLFEEVGDRLGLRVECAITDGSQPIGRGIGPALEARD 330 (490)
T ss_pred CCceEEecccCCCCcCCCHHHHHHHHHHHHHHHHhcCCeEEEEECCCCeehhccCCchHHHHH
Confidence 7889999999888778777777777777744 5556653 778888886654
No 12
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=82.12 E-value=3.1 Score=34.35 Aligned_cols=84 Identities=19% Similarity=0.183 Sum_probs=61.1
Q ss_pred CchhhHHHHHH-HHHHCCCc-----------EEEecccccccCCCccccccccchhhhcCCCeEEEecccc-cccchhhh
Q 023717 70 NGATTVSATMF-FASMVGIP-----------VFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIK-SILDIPRT 136 (278)
Q Consensus 70 ~GaTTVaaTm~-lA~~aGI~-----------VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~K-sILDi~~T 136 (278)
+|=|||+.-+. ...+.|.+ +..-=|.||.+-+-....| ..|+...-+.|+++|...-. +|=|.-+|
T Consensus 10 ~Gkt~~~~~l~~~l~~~~~~v~~~kp~~~~d~vliEGaGg~~~p~~~~~~-~~d~~~~~~~~vllV~~~~~g~i~~a~~~ 88 (134)
T cd03109 10 IGKTVATAILARALKEKGYRVAPLKPVQTYDFVLVEGAGGLCVPLKEDFT-NADVAKELNLPAILVTSAGLGSINHAFLT 88 (134)
T ss_pred cCHHHHHHHHHHHHHHCCCeEEEEecCCCCCEEEEECCCccccCCCCCCC-HHHHHHHhCCCEEEEEcCCCCcHhHHHHH
Confidence 67777776433 33334554 4567799999987766666 45777777899999985543 45558899
Q ss_pred HhHhhhCCeeEEeecCCC
Q 023717 137 LEYLETHGVCVAAYKTNE 154 (278)
Q Consensus 137 LE~LET~GV~V~gy~t~~ 154 (278)
+++++..|+++.|+--+.
T Consensus 89 ~~~l~~~g~~i~gvi~N~ 106 (134)
T cd03109 89 IEAARIKGIILNGVLGNV 106 (134)
T ss_pred HHHHHhcCCceeEEEEcc
Confidence 999999999999997554
No 13
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=80.54 E-value=39 Score=31.37 Aligned_cols=117 Identities=23% Similarity=0.188 Sum_probs=79.7
Q ss_pred ccccchhhhHhHhhhCCeeEEeec-CCCCcceeecCCCCccCcc------------------cCCHHHHHHHHHHHHhcC
Q 023717 128 KSILDIPRTLEYLETHGVCVAAYK-TNEFPAFFTETSGSKVPCR------------------VDSPEDCARLIDVNMKLK 188 (278)
Q Consensus 128 KsILDi~~TLE~LET~GV~V~gy~-t~~fPaFy~~~Sg~~~~~r------------------~d~~~e~A~~~~~~~~l~ 188 (278)
|=.-.+..-++.||.+|+.++-.= |.+||.|.++.. +=-|.| +-.+++++...+....++
T Consensus 71 ~v~~~lq~~i~~le~~G~d~illlCTG~F~~l~~~~~-lleP~ril~~lV~al~~~~~vGVivP~~eQ~~~~~~kW~~l~ 149 (221)
T PF07302_consen 71 KVEPRLQACIAQLEAQGYDVILLLCTGEFPGLTARNP-LLEPDRILPPLVAALVGGHQVGVIVPLPEQIAQQAEKWQPLG 149 (221)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEeccCCCCCCCCCcc-eeehHHhHHHHHHHhcCCCeEEEEecCHHHHHHHHHHHHhcC
Confidence 344467777889999999999985 999999998885 444443 345777776666655677
Q ss_pred CCCeEEEEeCCCccCCCChHHHHHHHHHHHHHHHHcCCC-----CccCChHHHHHHHHHhCCccHHHHHH
Q 023717 189 LGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNIT-----GNAETPFLLARVNELTGGLSLASNIA 253 (278)
Q Consensus 189 l~~g~lvanPiP~e~~~~~~~i~~~i~~Al~ea~~~gi~-----Gk~vTPflL~~i~elT~G~Sl~aNia 253 (278)
-+--...++|.= -+ ++-+.+|=++-+++|.. ==.+|-..=+.+.+.|+.--+-+|..
T Consensus 150 ~~~~~a~asPy~----~~----~~~l~~Aa~~L~~~gadlIvLDCmGYt~~~r~~~~~~~g~PVlLsr~l 211 (221)
T PF07302_consen 150 NPVVVAAASPYE----GD----EEELAAAARELAEQGADLIVLDCMGYTQEMRDIVQRALGKPVLLSRTL 211 (221)
T ss_pred CCeEEEEeCCCC----CC----HHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHhCCCEEeHHHH
Confidence 677777888862 12 23444455555555542 23467788888888888887777643
No 14
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=79.16 E-value=38 Score=31.08 Aligned_cols=158 Identities=16% Similarity=0.114 Sum_probs=95.8
Q ss_pred HHHHHHHHCCCcEEEecccccccC-CCcccccccc-chh-------hhcCCCeEE-EecccccccchhhhHhHhhhCCee
Q 023717 77 ATMFFASMVGIPVFVTGGIGGVHR-HGEHTMDISS-DLT-------ELGRTPVAV-VSAGIKSILDIPRTLEYLETHGVC 146 (278)
Q Consensus 77 aTm~lA~~aGI~VFaTGGIGGVHr-g~~~t~DiSa-DL~-------eL~rtpV~V-VcaG~KsILDi~~TLE~LET~GV~ 146 (278)
.+..++..+|+++..|||-+.-.- |...+-.++- |+. .-..+||++ .-.|--+..++.+|.+.|+..||.
T Consensus 20 ~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~ 99 (243)
T cd00377 20 LSARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGAA 99 (243)
T ss_pred HHHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCE
Confidence 567888999999999999876522 6555555552 222 234578555 335555778899999999999987
Q ss_pred EEeecCCCCcceeecCCCCccCcccCCHHHHHHHHHHHHhc-CC-CCeEEEEeCCCccCCCC-hHHHHHHHHHHHHHHHH
Q 023717 147 VAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKL-KL-GSGLVIGVPIPREHAAS-GRVIESAIQSALREARE 223 (278)
Q Consensus 147 V~gy~t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l-~l-~~g~lvanPiP~e~~~~-~~~i~~~i~~Al~ea~~ 223 (278)
-+-.....+|.= -|+.-.+.+-+++|..+.+++-.+. .- +.-+|++.= +.... ...++++|++|.+.++
T Consensus 100 gv~iED~~~~k~----~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiART---Da~~~~~~~~~eai~Ra~ay~~- 171 (243)
T cd00377 100 GIHIEDQVGPKK----CGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIART---DALLAGEEGLDEAIERAKAYAE- 171 (243)
T ss_pred EEEEecCCCCcc----ccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEc---CchhccCCCHHHHHHHHHHHHH-
Confidence 776665555432 2222345666788888777755443 21 456677662 11111 1346888888866544
Q ss_pred cCCCCccC----ChHHHHHHHHH
Q 023717 224 KNITGNAE----TPFLLARVNEL 242 (278)
Q Consensus 224 ~gi~Gk~v----TPflL~~i~el 242 (278)
.|-.+=-+ ++--++++.+.
T Consensus 172 AGAD~v~v~~~~~~~~~~~~~~~ 194 (243)
T cd00377 172 AGADGIFVEGLKDPEEIRAFAEA 194 (243)
T ss_pred cCCCEEEeCCCCCHHHHHHHHhc
Confidence 44433222 44444555544
No 15
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=78.95 E-value=2.2 Score=36.78 Aligned_cols=67 Identities=22% Similarity=0.271 Sum_probs=51.4
Q ss_pred HCCCcEEEecccccccCCCccccccccchhhhcCCCeEEEe-cccccccchhhhHhHhhhCCeeEEeec
Q 023717 84 MVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVS-AGIKSILDIPRTLEYLETHGVCVAAYK 151 (278)
Q Consensus 84 ~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVc-aG~KsILDi~~TLE~LET~GV~V~gy~ 151 (278)
...=++..-=|.||..-+.... +..+||..-=..||++|+ .+-.+|=++-.|+|+|+.+|+++.|.=
T Consensus 97 ~~~~D~vlVEGag~~~~~~~~~-~~n~dia~~L~a~vIlV~~~~~g~i~~~l~~~~~~~~~g~~v~GvI 164 (199)
T PF13500_consen 97 AEEYDVVLVEGAGGLMVPIFSG-DLNADIAKALGAPVILVASGRLGTINHTLLTIEALKQRGIRVLGVI 164 (199)
T ss_dssp HTTTCEEEEEESSSTTSECCTT-EEHHHHHHHHT-EEEEEEESSTTHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred hhcCCEEEEeCCcccCcccccC-hHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 3466899999999998654443 778888887788966655 556678888999999999999999984
No 16
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=78.07 E-value=20 Score=36.98 Aligned_cols=178 Identities=17% Similarity=0.197 Sum_probs=114.6
Q ss_pred ecCCHHHHHHHHhc---CCCcccccccchHHHHhcCCC-ch-hhHHHHHHHHHHCCCcEEEecccccccCCCcccccccc
Q 023717 36 VGLSTEELERLAKL---GSKAQKTARRDIAHVVATRGN-GA-TTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISS 110 (278)
Q Consensus 36 VGl~~~el~~la~~---~~~~~K~srRDl~~~~a~~~~-Ga-TTVaaTm~lA~~aGI~VFaTGGIGGVHrg~~~t~DiSa 110 (278)
=|++.+|+..|++. .......+...+-.-++.|.. |- ||++...++ ..+|++|-=+||=|=-|.++ |+
T Consensus 132 kG~t~~Eia~lt~AM~~sg~~l~~~~~~vvDkhgTGGd~gnk~nl~~apIV-AA~Gv~VaKhsnRaits~sG------Ta 204 (500)
T TIGR03327 132 NGMDMDEIEWLTRAMAETGDMLSFDRHPIMDKHSIGGVPGNKISLLVVPIV-AAAGLTIPKTSSRAITSAAG------TA 204 (500)
T ss_pred hCCCHHHHHHHHHHHHHhCCcccCCCCCeEEEeCCCCCCCCCEEHHHHHHH-HhCCCCeeeeCCCCcCCCcc------HH
Confidence 37999999888652 112333443222222333333 22 355544444 55899999999988778887 67
Q ss_pred chhh-hcCCCeEEEecccccccchhhhHhHhhhCCeeE-EeecCCCCcce---eecCCCCccCcccCCHHHHHHHHHHHH
Q 023717 111 DLTE-LGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV-AAYKTNEFPAF---FTETSGSKVPCRVDSPEDCARLIDVNM 185 (278)
Q Consensus 111 DL~e-L~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V-~gy~t~~fPaF---y~~~Sg~~~~~r~d~~~e~A~~~~~~~ 185 (278)
|..| |. +-=|+.....+.+|..|.+. +|-..+.-|++ |.-+ + +..+||.-.++.-|.+++
T Consensus 205 D~LEsL~-----------~v~ls~e~~~~~v~~~G~~fl~Gqa~~l~PAdk~l~alr---d-t~tvds~~li~aSImSKK 269 (500)
T TIGR03327 205 DVMEVLA-----------PVEFSADEIKRIVEKTGGCLVWGGATNLAPADDKIIKVE---R-PLSIDPRGQMLASVMAKK 269 (500)
T ss_pred HHHHHhh-----------CCCCCHHHHHHHHHHCCEEEEECCccccCHHHHHHHHhc---c-ccCCCcHHHHHHHHHHHH
Confidence 7666 32 33366777888899999876 44345667774 4333 2 668999988888777777
Q ss_pred hcCCCCeEEEEeCCCccCCCChHHHHHHHHHHHH-HHHHcCCC------------CccCChHH
Q 023717 186 KLKLGSGLVIGVPIPREHAASGRVIESAIQSALR-EAREKNIT------------GNAETPFL 235 (278)
Q Consensus 186 ~l~l~~g~lvanPiP~e~~~~~~~i~~~i~~Al~-ea~~~gi~------------Gk~vTPfl 235 (278)
--.-...+|+=+|+=.---+...+--+-+.+.+. -+++.|++ |..+=|.|
T Consensus 270 lA~G~d~lvlDVk~G~gAfm~~~~~A~~LA~~mv~vg~~~G~~~~a~iTdm~qPlG~~iGnaL 332 (500)
T TIGR03327 270 GAIGADHVVIDIPVGKGAKVKTVEEGRKLARDFIELGDRLGMNVECAITYGGQPIGRAIGPAL 332 (500)
T ss_pred HHcCCCeEEEEcCcCCCCcCCCHHHHHHHHHHHHHHHHHcCCeEEEEECCCCCccccccCcHH
Confidence 7666788999999977766665444444555443 34556663 77777776
No 17
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=75.26 E-value=10 Score=38.72 Aligned_cols=44 Identities=9% Similarity=0.097 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcCCCCeEE----EEeCCCccCCCC---hHHHHHHHHHHHHH
Q 023717 177 CARLIDVNMKLKLGSGLV----IGVPIPREHAAS---GRVIESAIQSALRE 220 (278)
Q Consensus 177 ~A~~~~~~~~l~l~~g~l----vanPiP~e~~~~---~~~i~~~i~~Al~e 220 (278)
...++..+++||+++-+= +.||....+.+- .....+.+.++++.
T Consensus 352 l~~~~~~R~~Lg~rTifN~lgpL~NP~~~~~~v~Gv~~~~~~~~~a~~l~~ 402 (534)
T PRK14607 352 MKHAAPARRELGIRTAFNLLGPLTNPARVKYQIVGVFDPSYAEPLAQALQR 402 (534)
T ss_pred HHHHHHHHHHhCCCcHHHhHHhccCCCCCCcEEEeeCCHHHHHHHHHHHHH
Confidence 345666778888774322 346765555543 33445555555554
No 18
>PRK13947 shikimate kinase; Provisional
Probab=70.71 E-value=16 Score=30.22 Aligned_cols=78 Identities=21% Similarity=0.199 Sum_probs=45.9
Q ss_pred CCCchhhHHHHHHHHHHCCCcEEEecccccccCCCcccccc-------ccc-----hhhhcCCCeEEEecccccccchhh
Q 023717 68 RGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDI-------SSD-----LTELGRTPVAVVSAGIKSILDIPR 135 (278)
Q Consensus 68 ~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrg~~~t~Di-------SaD-----L~eL~rtpV~VVcaG~KsILDi~~ 135 (278)
-.+|.||+| -.||+..|++++-+.=.---+-|-...-.+ -.| +.+|..-.-+||+.|.--++| +.
T Consensus 10 ~GsGKst~a--~~La~~lg~~~id~d~~~~~~~g~~~~~~~~~~ge~~~~~~e~~~~~~l~~~~~~vi~~g~g~vl~-~~ 86 (171)
T PRK13947 10 MGTGKTTVG--KRVATTLSFGFIDTDKEIEKMTGMTVAEIFEKDGEVRFRSEEKLLVKKLARLKNLVIATGGGVVLN-PE 86 (171)
T ss_pred CCCCHHHHH--HHHHHHhCCCEEECchhhhhhcCCcHHHHHHHhChHHHHHHHHHHHHHHhhcCCeEEECCCCCcCC-HH
Confidence 457899998 477899999887655321111111000000 011 334554445666778777888 47
Q ss_pred hHhHhhhCCeeEE
Q 023717 136 TLEYLETHGVCVA 148 (278)
Q Consensus 136 TLE~LET~GV~V~ 148 (278)
++++|+..|+.|.
T Consensus 87 ~~~~l~~~~~vv~ 99 (171)
T PRK13947 87 NVVQLRKNGVVIC 99 (171)
T ss_pred HHHHHHhCCEEEE
Confidence 8999998886443
No 19
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=70.68 E-value=4.3 Score=36.30 Aligned_cols=70 Identities=17% Similarity=0.174 Sum_probs=48.1
Q ss_pred CCCcEEEecccccccCCCccccccccchhhhcCCCeEEEe-cccccccchhhhHhHhhhCCeeEEeecCCCC
Q 023717 85 VGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVS-AGIKSILDIPRTLEYLETHGVCVAAYKTNEF 155 (278)
Q Consensus 85 aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVc-aG~KsILDi~~TLE~LET~GV~V~gy~t~~f 155 (278)
..-.+..-=|.||++-+-...... .|+..--..||++|+ .+.-+|=+.-.|+|+|..+|+++.|+=-+.+
T Consensus 104 ~~~D~VlVEGaGgl~~p~~~~~~~-~d~~~~~~~pvilV~~~~lg~in~~lLt~~~l~~~~~~~~gvV~N~~ 174 (231)
T PRK12374 104 EKVDHVVVEGTGGWRSLMNDLRPL-SEWVVQEQLPVLMVVGIQEGCINHALLTAQAIANDGLPLIGWVANRI 174 (231)
T ss_pred hhCCEEEEECCCCcceeccCcccH-HHHHHHhCCCEEEEECCCcChHHHHHHHHHHHHhCCCcEEEEEEeCc
Confidence 455777867777777654332232 255555589988887 2233488888999999999999999864443
No 20
>PRK08508 biotin synthase; Provisional
Probab=70.47 E-value=92 Score=28.95 Aligned_cols=185 Identities=20% Similarity=0.202 Sum_probs=97.3
Q ss_pred hHHHHHHHHHHHHHCCCccc-EEEEEcCceeecCCHHHHHHHHhcCCC----cccccccchHHHHhcCCCchhh---HHH
Q 023717 6 NFETAKEVEAIVRNNGAVPA-TIAILEGLPCVGLSTEELERLAKLGSK----AQKTARRDIAHVVATRGNGATT---VSA 77 (278)
Q Consensus 6 Nle~A~~~E~~vR~~GavPA-TIaii~G~i~VGl~~~el~~la~~~~~----~~K~srRDl~~~~a~~~~GaTT---Vaa 77 (278)
.+|...++=+.+|+.+ |- .+..-.|.. ++|+|.+|.+.+-+ -.+.+ ++ .. .+...+-| +=.
T Consensus 73 ~~e~~~ei~~~ik~~~--p~l~i~~s~G~~----~~e~l~~Lk~aGld~~~~~lEt~-~~---~~-~~i~~~~~~~~~l~ 141 (279)
T PRK08508 73 KLEYVAEAAKAVKKEV--PGLHLIACNGTA----SVEQLKELKKAGIFSYNHNLETS-KE---FF-PKICTTHTWEERFQ 141 (279)
T ss_pred cHHHHHHHHHHHHhhC--CCcEEEecCCCC----CHHHHHHHHHcCCCEEcccccch-HH---Hh-cCCCCCCCHHHHHH
Confidence 4444455555666654 32 233345555 68889888654311 12333 22 12 33333333 334
Q ss_pred HHHHHHHCCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCcc
Q 023717 78 TMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPA 157 (278)
Q Consensus 78 Tm~lA~~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPa 157 (278)
|+..|+.+||+|.. |+|=|. | |+.- |+-.++.+|...++--+-++
T Consensus 142 ~i~~a~~~Gi~v~s-g~I~Gl--G-Et~e-------------------------d~~~~l~~lr~L~~~svpl~------ 186 (279)
T PRK08508 142 TCENAKEAGLGLCS-GGIFGL--G-ESWE-------------------------DRISFLKSLASLSPHSTPIN------ 186 (279)
T ss_pred HHHHHHHcCCeecc-eeEEec--C-CCHH-------------------------HHHHHHHHHHcCCCCEEeeC------
Confidence 88889999997765 555553 3 2222 33334444444444333333
Q ss_pred eeecCCCCccCcccCCHHHHHHHHHHHHhcCCCCeEEEEeCCCccCCCChHHHHHHHHHHHHHHHHcCCC----CccCCh
Q 023717 158 FFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNIT----GNAETP 233 (278)
Q Consensus 158 Fy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~~~i~~~i~~Al~ea~~~gi~----Gk~vTP 233 (278)
||.+..|.+....--+++|.-+++...+-+ +|...+-..+ - . +..+.+-...+-..|+. |.++|
T Consensus 187 ~~~p~~~t~~~~~~~~~~~~lr~iAv~Rl~-lp~~~i~~~~---g----r---~~~~~~~~~~~~~~g~n~~~~g~~lt- 254 (279)
T PRK08508 187 FFIPNPALPLKAPTLSADEALEIVRLAKEA-LPNARLMVAG---G----R---EVVFGERQYEIFEAGANAIVIGDYLT- 254 (279)
T ss_pred CcCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCceeeecC---C----h---hhhchhhHHHHHhcCCcceeecCccc-
Confidence 344444443322225788999988877766 6766443332 1 1 11122222333444544 55555
Q ss_pred HHHHHHHHHhCCccHHHHHHHHHH
Q 023717 234 FLLARVNELTGGLSLASNIALVKN 257 (278)
Q Consensus 234 flL~~i~elT~G~Sl~aNiaLl~n 257 (278)
|.|++.+.-++++++
T Consensus 255 ---------~~g~~~~~d~~~~~~ 269 (279)
T PRK08508 255 ---------TKGEAPKKDIEKLKS 269 (279)
T ss_pred ---------CCCCChHHHHHHHHH
Confidence 789999999999876
No 21
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=69.27 E-value=5.6 Score=34.04 Aligned_cols=104 Identities=17% Similarity=0.278 Sum_probs=60.2
Q ss_pred EEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCcceeecCCCCccC
Q 023717 89 VFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVP 168 (278)
Q Consensus 89 VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~~~~ 168 (278)
+.+|||.||+- .-+..-|.+-+...+++++--...=-+....++.|+.+|+.|.=++
T Consensus 3 ylitGG~gglg------~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~----------------- 59 (181)
T PF08659_consen 3 YLITGGLGGLG------QSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQ----------------- 59 (181)
T ss_dssp EEEETTTSHHH------HHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE-----------------
T ss_pred EEEECCccHHH------HHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeec-----------------
Confidence 67899999983 3677788887777777776664333455578999999999776322
Q ss_pred cccCCHHHHHHHHHHHHhcC-CCCeEEEEeCCCccCCC---ChHHHHHHHH
Q 023717 169 CRVDSPEDCARLIDVNMKLK-LGSGLVIGVPIPREHAA---SGRVIESAIQ 215 (278)
Q Consensus 169 ~r~d~~~e~A~~~~~~~~l~-l~~g~lvanPiP~e~~~---~~~~i~~~i~ 215 (278)
..+.+++++.+++..-.+.. -=.|++-+-.++.+..+ +.++++..+.
T Consensus 60 ~Dv~d~~~v~~~~~~~~~~~~~i~gVih~ag~~~~~~~~~~t~~~~~~~~~ 110 (181)
T PF08659_consen 60 CDVTDPEAVAAALAQLRQRFGPIDGVIHAAGVLADAPIQDQTPDEFDAVLA 110 (181)
T ss_dssp --TTSHHHHHHHHHTSHTTSS-EEEEEE-------B-GCC--HHHHHHHHH
T ss_pred cCccCHHHHHHHHHHHHhccCCcceeeeeeeeecccccccCCHHHHHHHHh
Confidence 33567888888887544332 22567777666665443 3444444443
No 22
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=68.42 E-value=28 Score=32.38 Aligned_cols=71 Identities=20% Similarity=0.142 Sum_probs=41.9
Q ss_pred HHHHHHHHHCCCcEEEeccccccc-----CCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEE-e
Q 023717 76 SATMFFASMVGIPVFVTGGIGGVH-----RHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVA-A 149 (278)
Q Consensus 76 aaTm~lA~~aGI~VFaTGGIGGVH-----rg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~-g 149 (278)
..++.+|+..|++|++|..-.--+ .|+...+|.. |..+ ....+.++|+|.-+. +...++.|...|.-|+ |
T Consensus 179 ~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~-~~~~-~~~d~~i~~~~~~~~--~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 179 HLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAY-DTPP-EPLDAAILFAPAGGL--VPPALEALDRGGVLAVAG 254 (329)
T ss_pred HHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceecccc-ccCc-ccceEEEECCCcHHH--HHHHHHhhCCCcEEEEEe
Confidence 345678999999998875422100 0333333311 1110 134567888887664 6678999999997654 4
Q ss_pred e
Q 023717 150 Y 150 (278)
Q Consensus 150 y 150 (278)
+
T Consensus 255 ~ 255 (329)
T TIGR02822 255 I 255 (329)
T ss_pred c
Confidence 4
No 23
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=67.49 E-value=99 Score=28.17 Aligned_cols=190 Identities=16% Similarity=0.111 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHCCCcccEEEEEcCceeecCCHHHHHHHHhcCCCccccccc---chHHHHhcCCCchhhHHHHHHHHH
Q 023717 7 FETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARR---DIAHVVATRGNGATTVSATMFFAS 83 (278)
Q Consensus 7 le~A~~~E~~vR~~GavPATIaii~G~i~VGl~~~el~~la~~~~~~~K~srR---Dl~~~~a~~~~GaTTVaaTm~lA~ 83 (278)
.+...++-+++++.|. .+.+-.| -+++|+++.|.+.+-+..-++-. ++=..+.++.+-...+ -++..++
T Consensus 97 ~~~~~~i~~~~~~~~i---~~~~~~g----~~~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~~~~-~ai~~l~ 168 (296)
T TIGR00433 97 MEYVEAMVQIVEEMGL---KTCATLG----LLDPEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYDDRV-DTLENAK 168 (296)
T ss_pred HHHHHHHHHHHHhCCC---eEEecCC----CCCHHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHHHHH-HHHHHHH
Confidence 5556666666666653 2222223 24688888886653222222211 1111111222222223 4567788
Q ss_pred HCCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeec-CCCCcceeecC
Q 023717 84 MVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYK-TNEFPAFFTET 162 (278)
Q Consensus 84 ~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~-t~~fPaFy~~~ 162 (278)
.+||+|.. +.|=|. |. +.=|+..++++|...|+..+.+. -.-+ +.
T Consensus 169 ~~Gi~v~~-~~i~Gl--~e--------------------------t~~d~~~~~~~l~~l~~~~i~l~~l~p~-----~g 214 (296)
T TIGR00433 169 KAGLKVCS-GGIFGL--GE--------------------------TVEDRIGLALALANLPPESVPINFLVKI-----KG 214 (296)
T ss_pred HcCCEEEE-eEEEeC--CC--------------------------CHHHHHHHHHHHHhCCCCEEEeeeeEEc-----CC
Confidence 88998543 344443 21 22455567777777777655443 1111 12
Q ss_pred CCCccCcccCCHHHHHHHHHHHHhcCCCCeEE-EEeCCCccCCCChHHHHHHHHH-HHHHHHHcCCCCccCChHHHHHHH
Q 023717 163 SGSKVPCRVDSPEDCARLIDVNMKLKLGSGLV-IGVPIPREHAASGRVIESAIQS-ALREAREKNITGNAETPFLLARVN 240 (278)
Q Consensus 163 Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~l-vanPiP~e~~~~~~~i~~~i~~-Al~ea~~~gi~Gk~vTPflL~~i~ 240 (278)
+.+.- +..-+.++..+++...+.+ +|...+ +.--=| ..+.+...+ |+...-..=+.|.++|
T Consensus 215 T~l~~-~~~~s~~~~~~~ia~~r~~-lp~~~i~~~~~~~-------~~~~~~~~~~~l~~G~n~i~~g~~~~-------- 277 (296)
T TIGR00433 215 TPLAD-NKELSADDALKTIALARII-MPKAEIRLAGGRE-------VNMRELQQAMCFMAGANSIFVGDYLT-------- 277 (296)
T ss_pred CccCC-CCCCCHHHHHHHHHHHHHH-CCcceEEEeCCcc-------hhhhhhHHHHHHHhcCceEEEcCccc--------
Confidence 22221 2334778888888876665 454433 222111 122333333 4443322223588887
Q ss_pred HHhCCccHH-HHHHHHHH
Q 023717 241 ELTGGLSLA-SNIALVKN 257 (278)
Q Consensus 241 elT~G~Sl~-aNiaLl~n 257 (278)
|+|++.. .++.++++
T Consensus 278 --~~g~~~~~~~~~~~~~ 293 (296)
T TIGR00433 278 --TTGNPEEDKDKKLLAK 293 (296)
T ss_pred --CCCCCCcHHHHHHHHH
Confidence 8999998 99988875
No 24
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=66.06 E-value=72 Score=30.93 Aligned_cols=138 Identities=20% Similarity=0.256 Sum_probs=94.8
Q ss_pred HHHHHHHHCCCcEEEecccc-----cccCCCccccc----cccchhhhcCCCeEE-EecccccccchhhhHhHhhhCCee
Q 023717 77 ATMFFASMVGIPVFVTGGIG-----GVHRHGEHTMD----ISSDLTELGRTPVAV-VSAGIKSILDIPRTLEYLETHGVC 146 (278)
Q Consensus 77 aTm~lA~~aGI~VFaTGGIG-----GVHrg~~~t~D----iSaDL~eL~rtpV~V-VcaG~KsILDi~~TLE~LET~GV~ 146 (278)
.+..++..+|-+...|+|-| |.--++..||| .-.+++...+.||.| +=+|--.-+.+-+|...||..|+-
T Consensus 29 ~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~~~nvartV~~~~~aG~a 108 (289)
T COG2513 29 GSALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAVDLPVLVDIDTGFGEALNVARTVRELEQAGAA 108 (289)
T ss_pred HHHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhcCCceEEeccCCCCcHHHHHHHHHHHHHcCcc
Confidence 56789999999999999865 43334444444 566778888999988 667877889999999999999998
Q ss_pred EEeecCCCCcceeecCCCCccCcccCCHHHHHHHHHHHHhcCC-CCeEEEEeCCCccCCCChHHHHHHHHHHHHHHH
Q 023717 147 VAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKL-GSGLVIGVPIPREHAASGRVIESAIQSALREAR 222 (278)
Q Consensus 147 V~gy~t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l-~~g~lvanPiP~e~~~~~~~i~~~i~~Al~ea~ 222 (278)
=+-.....+|.=...-.| ..+-+++|.++-|++-.+-.- +.=++++.- ++.-.+-++++|++|.+..+
T Consensus 109 gi~iEDq~~pk~cgh~~g----k~l~~~~e~v~rIkAa~~a~~~~~fvi~ART----da~~~~~ld~AI~Ra~AY~e 177 (289)
T COG2513 109 GIHIEDQVGPKRCGHLPG----KELVSIDEMVDRIKAAVEARRDPDFVIIART----DALLVEGLDDAIERAQAYVE 177 (289)
T ss_pred eeeeeecccchhcCCCCC----CCcCCHHHHHHHHHHHHHhccCCCeEEEeeh----HHHHhccHHHHHHHHHHHHH
Confidence 887778888853322233 345567777777776555543 444555542 22222337888888766544
No 25
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=65.25 E-value=7.2 Score=35.48 Aligned_cols=41 Identities=27% Similarity=0.327 Sum_probs=25.0
Q ss_pred EEEecccccccchhhh-HhHhhhCCeeEEeecCCCCcceeecCC
Q 023717 121 AVVSAGIKSILDIPRT-LEYLETHGVCVAAYKTNEFPAFFTETS 163 (278)
Q Consensus 121 ~VVcaG~KsILDi~~T-LE~LET~GV~V~gy~t~~fPaFy~~~S 163 (278)
+|+=||---.-|+.+. -+.|-.+||||+|+.+- --|++++|
T Consensus 5 ~v~~SGDgGw~~~d~~~a~~l~~~G~~VvGvdsl--~Yfw~~rt 46 (192)
T PF06057_consen 5 AVFFSGDGGWRDLDKQIAEALAKQGVPVVGVDSL--RYFWSERT 46 (192)
T ss_pred EEEEeCCCCchhhhHHHHHHHHHCCCeEEEechH--HHHhhhCC
Confidence 3444444444444443 47899999999999743 33555444
No 26
>PRK06256 biotin synthase; Validated
Probab=64.03 E-value=1.3e+02 Score=28.27 Aligned_cols=164 Identities=21% Similarity=0.268 Sum_probs=85.9
Q ss_pred CCHHHHHHHHhcCCCcccc----cccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCCccccccccchh
Q 023717 38 LSTEELERLAKLGSKAQKT----ARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLT 113 (278)
Q Consensus 38 l~~~el~~la~~~~~~~K~----srRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~ 113 (278)
+++++++.|.+.+-+..-+ |.+-++. +.++.+-- .+--++..++.+||+| .+|+|=|. | |
T Consensus 150 l~~e~l~~LkeaG~~~v~~~lEts~~~~~~-i~~~~t~~-~~i~~i~~a~~~Gi~v-~~~~I~Gl--g-E---------- 213 (336)
T PRK06256 150 LTEEQAERLKEAGVDRYNHNLETSRSYFPN-VVTTHTYE-DRIDTCEMVKAAGIEP-CSGGIIGM--G-E---------- 213 (336)
T ss_pred CCHHHHHHHHHhCCCEEecCCccCHHHHhh-cCCCCCHH-HHHHHHHHHHHcCCee-ccCeEEeC--C-C----------
Confidence 6788888887653111111 2222222 11222211 2236788888899874 55556553 2 1
Q ss_pred hhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCcceeecCCCCccC-cccCCHHHHHHHHHHHHhcCCCCe
Q 023717 114 ELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVP-CRVDSPEDCARLIDVNMKLKLGSG 192 (278)
Q Consensus 114 eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~~~~-~r~d~~~e~A~~~~~~~~l~l~~g 192 (278)
+.=|+-.++++|...++.-+.+. ||.+..|-++. ...-+++|..+++..-+-+ +|..
T Consensus 214 ---------------t~ed~~~~~~~l~~l~~~~v~i~------~l~P~pGT~l~~~~~~~~~e~l~~ia~~Rl~-~p~~ 271 (336)
T PRK06256 214 ---------------SLEDRVEHAFFLKELDADSIPIN------FLNPIPGTPLENHPELTPLECLKTIAIFRLI-NPDK 271 (336)
T ss_pred ---------------CHHHHHHHHHHHHhCCCCEEeec------ccccCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCC
Confidence 22345568888888887655443 23332222221 1234788888888755444 4544
Q ss_pred EEEEeCCCccCCCChHHHHHHHHHHHHHHHHcC-CCCccCChHHHHHHHHHhCCccHHHHHHHHHH
Q 023717 193 LVIGVPIPREHAASGRVIESAIQSALREAREKN-ITGNAETPFLLARVNELTGGLSLASNIALVKN 257 (278)
Q Consensus 193 ~lvanPiP~e~~~~~~~i~~~i~~Al~ea~~~g-i~Gk~vTPflL~~i~elT~G~Sl~aNiaLl~n 257 (278)
.|-.+=..+..+.+ .+ ..++ +-..+ +.|.++| |.|++.+.+++++++
T Consensus 272 -~I~~~~gr~~~~~~--~~---~~~~--~g~~~~~~g~~lt----------~~g~~~~~d~~~~~~ 319 (336)
T PRK06256 272 -EIRIAGGREVNLRS--LQ---PLGL--GGANSVIVGNYLT----------TVGQPATADLDMIED 319 (336)
T ss_pred -eeEecCchhhhchh--hH---HHHh--ccCceeeECCccc----------CCCCChHHHHHHHHH
Confidence 33333223222221 11 1122 22223 2577766 999999999999876
No 27
>PRK10481 hypothetical protein; Provisional
Probab=63.68 E-value=1.2e+02 Score=28.00 Aligned_cols=122 Identities=19% Similarity=0.150 Sum_probs=75.9
Q ss_pred cccccccchhhhHhHhhhCCeeEEeec-CCCCcceeecCCCCccCccc------------------CCHHHHHHHHHHHH
Q 023717 125 AGIKSILDIPRTLEYLETHGVCVAAYK-TNEFPAFFTETSGSKVPCRV------------------DSPEDCARLIDVNM 185 (278)
Q Consensus 125 aG~KsILDi~~TLE~LET~GV~V~gy~-t~~fPaFy~~~Sg~~~~~r~------------------d~~~e~A~~~~~~~ 185 (278)
|=.|=.-++..-++.||.+|+.++-.- |.+||+|.+++.-..-|.+. -.++++.+..+...
T Consensus 71 s~~~v~~~lq~~i~~l~~~g~d~ivl~Ctgdfp~l~a~r~~l~~P~~~i~~lv~Al~~g~riGVitP~~~qi~~~~~kw~ 150 (224)
T PRK10481 71 SKQKVERDLQSVIEVLDNQGYDVILLLCTGEFPSLTARNAILLEPSRILPPLVAAIVGGHQVGVIVPVEEQLAQQAQKWQ 150 (224)
T ss_pred EHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCCCccccCccccCchhhHHHHHHHhcCCCeEEEEEeCHHHHHHHHHHHH
Confidence 334556678888999999999999986 99999999977666655543 23455555555555
Q ss_pred hcCCCCeEEEEeCCCccCCCChHHHHHHHHHHHHHHHHcCC-----CCccCChHHHHHHHHHhCCccHHHHHHH
Q 023717 186 KLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNI-----TGNAETPFLLARVNELTGGLSLASNIAL 254 (278)
Q Consensus 186 ~l~l~~g~lvanPiP~e~~~~~~~i~~~i~~Al~ea~~~gi-----~Gk~vTPflL~~i~elT~G~Sl~aNiaL 254 (278)
.+|.+.-+-.++|. .-+ ++.+.+|.++-..+|. .+-.++--+-+.+.+.++---+.+|-+.
T Consensus 151 ~~G~~v~~~~aspy----~~~----~~~l~~aa~~L~~~gaD~Ivl~C~G~~~~~~~~le~~lg~PVI~~n~a~ 216 (224)
T PRK10481 151 VLQKPPVFALASPY----HGS----EEELIDAGKELLDQGADVIVLDCLGYHQRHRDLLQKALDVPVLLSNVLV 216 (224)
T ss_pred hcCCceeEeecCCC----CCC----HHHHHHHHHHhhcCCCCEEEEeCCCcCHHHHHHHHHHHCcCEEcHHHHH
Confidence 55555554455542 122 2233334444444444 3455554557777777777766666554
No 28
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=63.37 E-value=23 Score=32.39 Aligned_cols=120 Identities=21% Similarity=0.233 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHCCCcccEEEEEcCce-----------eecCCHHHHHHHHhc--CCCcccccccchHHHHhcCCC---
Q 023717 7 FETAKEVEAIVRNNGAVPATIAILEGLP-----------CVGLSTEELERLAKL--GSKAQKTARRDIAHVVATRGN--- 70 (278)
Q Consensus 7 le~A~~~E~~vR~~GavPATIaii~G~i-----------~VGl~~~el~~la~~--~~~~~K~srRDl~~~~a~~~~--- 70 (278)
++.|+++.++++++|+- .+||+++ |+|-++..+....+- .+..+=+|..|+..+..-...
T Consensus 51 ~~~a~~~~~lc~~~~v~----liINd~~dlA~~~~AdGVHlGq~D~~~~~ar~~~~~~~iIG~S~h~~eea~~A~~~g~D 126 (211)
T COG0352 51 LALAEKLRALCQKYGVP----LIINDRVDLALAVGADGVHLGQDDMPLAEARELLGPGLIIGLSTHDLEEALEAEELGAD 126 (211)
T ss_pred HHHHHHHHHHHHHhCCe----EEecCcHHHHHhCCCCEEEcCCcccchHHHHHhcCCCCEEEeecCCHHHHHHHHhcCCC
Confidence 68899999999999863 5566654 555554443333221 122445566666555443222
Q ss_pred ----------------chhhHHHHHHHHHHCCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchh
Q 023717 71 ----------------GATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIP 134 (278)
Q Consensus 71 ----------------GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~ 134 (278)
-...+..-..+.+...||+||-|||.= +=..++.+-+=.-|+|||+=.+ =-|.+
T Consensus 127 Yv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vAIGGi~~---------~nv~~v~~~Ga~gVAvvsai~~-a~d~~ 196 (211)
T COG0352 127 YVGLGPIFPTSTKPDAPPLGLEGLREIRELVNIPVVAIGGINL---------ENVPEVLEAGADGVAVVSAITS-AADPA 196 (211)
T ss_pred EEEECCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEEEcCCCH---------HHHHHHHHhCCCeEEehhHhhc-CCCHH
Confidence 123344545667777799999888752 3334444444455777765322 23445
Q ss_pred hhHhHh
Q 023717 135 RTLEYL 140 (278)
Q Consensus 135 ~TLE~L 140 (278)
++.+.|
T Consensus 197 ~a~~~~ 202 (211)
T COG0352 197 AAAKAL 202 (211)
T ss_pred HHHHHH
Confidence 544444
No 29
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=61.29 E-value=34 Score=37.23 Aligned_cols=106 Identities=19% Similarity=0.231 Sum_probs=69.2
Q ss_pred CCcEEEecccccccCCCccccccccchhhhcCCCeEEEecc-cccccchhhhHhHhhhCCeeEEeecCCCCcceeecCCC
Q 023717 86 GIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAG-IKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSG 164 (278)
Q Consensus 86 GI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG-~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg 164 (278)
+-.+..-=|-|||+-=....... .||..--+-||++|+.+ ==.|=.-=.|+|+|...|++|.|+--.+ .
T Consensus 184 ~~d~vlVEGAGGl~vPl~~~~~~-~Dl~~~l~lPvILV~~~~LG~INhtllt~eaL~~rGi~v~gii~~~--------~- 253 (817)
T PLN02974 184 GRVLALVETAGGVASPGPSGTLQ-CDLYRPLRLPAILVGDGRLGGISATLAAYESLLLRGYDVVAVVIED--------H- 253 (817)
T ss_pred cCCeEEEECCCcccccCCCCCCH-HHHHHHhCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEeC--------C-
Confidence 34677888999998744333322 48887778898777653 3456566689999999999999986222 1
Q ss_pred CccCcccCCHHHHHHHHHHHHhcCCCCeEEEEeCCCccCCCChHHHHHHHH
Q 023717 165 SKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQ 215 (278)
Q Consensus 165 ~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~~~i~~~i~ 215 (278)
..++.+.+.+.++. .-.++..-|+|+. +.+.++++.+
T Consensus 254 -----~~~N~~~l~~~~~~------~~pv~~lp~~p~~---~~~~~~~~~~ 290 (817)
T PLN02974 254 -----GLSNEKALLSYLSN------RVPVFVLPPVPED---PGDDLDEWFD 290 (817)
T ss_pred -----ccchHHHHHHHHhc------CCcEEeCCCCCCC---cchhHHHHHH
Confidence 13777777765554 3334444455544 3345788876
No 30
>PLN02641 anthranilate phosphoribosyltransferase
Probab=61.01 E-value=20 Score=35.00 Aligned_cols=131 Identities=24% Similarity=0.279 Sum_probs=76.0
Q ss_pred HHHHHHHHHCCCcccEEEEE-cCceeecCCHHHHHHHHhc-CCCcccccc-cchHHHHhcCCCchhh--HH-HHHHHHHH
Q 023717 11 KEVEAIVRNNGAVPATIAIL-EGLPCVGLSTEELERLAKL-GSKAQKTAR-RDIAHVVATRGNGATT--VS-ATMFFASM 84 (278)
Q Consensus 11 ~~~E~~vR~~GavPATIaii-~G~i~VGl~~~el~~la~~-~~~~~K~sr-RDl~~~~a~~~~GaTT--Va-aTm~lA~~ 84 (278)
..++.+.. |+.|+-||-+ =+-=.=|.+.+||.-+++. .+...++.. .+.-..+..+.+|.-| +| +..+++..
T Consensus 24 ~~~~~il~--~~~~~qigAfL~alr~kget~eEiag~~~a~~~~~~~~~~~~~~~D~~gtGGdg~~t~nist~aa~v~A~ 101 (343)
T PLN02641 24 AALDFLLD--DADEAQISAFLVLLRAKGETFEEIAGLARAMIKRARKVDGLVDAVDIVGTGGDGANTVNISTGSSILAAA 101 (343)
T ss_pred HHHHHHHc--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCCCCCCCceeCCCCCCCCccccHHHHHHHHHh
Confidence 33555553 5888766422 1111115689999888763 112223321 1112234555555433 21 23567777
Q ss_pred CCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCccee
Q 023717 85 VGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFF 159 (278)
Q Consensus 85 aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy 159 (278)
+|++|+-.|.=+=-++- =|+|+-| +-|++-=++....-+.||..|+.-+ |....+|++.
T Consensus 102 ~G~~V~kHGnr~~ss~~------GsaDvLe---------aLGi~~~~~~~~~~~~l~~~g~~fl-~a~~~hPa~~ 160 (343)
T PLN02641 102 CGAKVAKQGNRSSSSAC------GSADVLE---------ALGVAIDLGPEGVKRCVEEVGIGFM-MAPKYHPAMK 160 (343)
T ss_pred CCCeEEEeCCCCCCCcc------CHHHHHH---------HcCCCCCCCHHHHHHHHHhcCcEEE-echhhCHHHH
Confidence 99999999873322221 2566655 4566666777788889999998877 6677777774
No 31
>PRK12744 short chain dehydrogenase; Provisional
Probab=60.44 E-value=59 Score=28.41 Aligned_cols=75 Identities=20% Similarity=0.279 Sum_probs=41.5
Q ss_pred CCCcEEEecccccccCCCccccccccchhhhcCCCeEEEec-ccccccchhhhHhHhhhCCeeEEeecCCCCcceeecCC
Q 023717 85 VGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSA-GIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETS 163 (278)
Q Consensus 85 aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVca-G~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~S 163 (278)
.|=.|++|||-||+-+ .+...|.+.+- .|++++. ..++-=....+.+.|+..+..+..
T Consensus 7 ~~k~vlItGa~~gIG~------~~a~~l~~~G~-~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~-------------- 65 (257)
T PRK12744 7 KGKVVLIAGGAKNLGG------LIARDLAAQGA-KAVAIHYNSAASKADAEETVAAVKAAGAKAVA-------------- 65 (257)
T ss_pred CCcEEEEECCCchHHH------HHHHHHHHCCC-cEEEEecCCccchHHHHHHHHHHHHhCCcEEE--------------
Confidence 3557999999999844 67777766543 3444432 222212234445555554432221
Q ss_pred CCccCcccCCHHHHHHHHHH
Q 023717 164 GSKVPCRVDSPEDCARLIDV 183 (278)
Q Consensus 164 g~~~~~r~d~~~e~A~~~~~ 183 (278)
++..+.+++++.+++..
T Consensus 66 ---~~~D~~~~~~~~~~~~~ 82 (257)
T PRK12744 66 ---FQADLTTAAAVEKLFDD 82 (257)
T ss_pred ---EecCcCCHHHHHHHHHH
Confidence 23445667777776664
No 32
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=59.90 E-value=16 Score=37.70 Aligned_cols=65 Identities=23% Similarity=0.344 Sum_probs=48.8
Q ss_pred hhhHHHHHHHHHHCCCcEEEecccccccCCCccccccccchhhhcC-CC-eEEEeccc--ccccchhhhHhHhhhCCeeE
Q 023717 72 ATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGR-TP-VAVVSAGI--KSILDIPRTLEYLETHGVCV 147 (278)
Q Consensus 72 aTTVaaTm~lA~~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~r-tp-V~VVcaG~--KsILDi~~TLE~LET~GV~V 147 (278)
|--..-+-.++....|||.|.||+|-. .|+.+|=+ +. .++.+++. ---.+++..-+||...|++|
T Consensus 468 G~d~~l~~~v~~~~~ipviasGG~g~~-----------~d~~~~~~~~~~~a~~aa~~fh~~~~~~~~~k~~l~~~gi~v 536 (538)
T PLN02617 468 GFDIELVKLVSDAVTIPVIASSGAGTP-----------EHFSDVFSKTNASAALAAGIFHRKEVPISSVKEHLLEEGIET 536 (538)
T ss_pred CcCHHHHHHHHhhCCCCEEEECCCCCH-----------HHHHHHHhcCCccEEEEEeeeccCCCCHHHHHHHHHHCCCcc
Confidence 344556667889999999999999953 46666554 43 56777765 33578999999999999987
No 33
>cd00659 Topo_IB_C DNA topoisomerase IB, C-terminal catalytic domain. Topoisomerase I promotes the relaxation of both positive and negative DNA superhelical tension by introducing a transient single-stranded break in duplex DNA. This function is vital for the processes of replication, transcription, and recombination. Unlike Topo IA enzymes, Topo IB enzymes do not require a single-stranded region of DNA or metal ions for their function. The type IB family of DNA topoisomerases includes eukaryotic nuclear topoisomerase I, topoisomerases of poxviruses and bacterial versions of Topo IB. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their C-terminal catalytic domain and the overall reaction mechanism with tyrosine recombinases. The C-terminal catalytic domain in topoisomerases is linked to a divergent N-terminal domain that shows no sequence or structure similarity to the N-terminal domains of tyrosine recombinases.
Probab=59.89 E-value=72 Score=29.31 Aligned_cols=68 Identities=7% Similarity=0.098 Sum_probs=56.9
Q ss_pred eecCCCCccCcccCCHHHHHHHHHHHHhcCCCCeEEEEeCCCccCCCChHHHHHHHHHHHHHHHHcCCCCccCChH
Q 023717 159 FTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPF 234 (278)
Q Consensus 159 y~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~~~i~~~i~~Al~ea~~~gi~Gk~vTPf 234 (278)
|..+||..-..++++...++++++.-.+ .+|+--||..+ +.+.++...++++|.+.. .+++=|++.=|
T Consensus 90 F~GK~g~~~~~~v~d~~~l~~~l~~~~~-k~pg~~LF~y~--~~~~v~s~~vN~yl~e~~-----~~~TaKdFRTw 157 (218)
T cd00659 90 FLGKDSIRYENEVEVEPRLFKNLRKFLD-KLPGDDLFQYL--QVDRLNSSKLNAYLREFM-----EGLTAKVFRTY 157 (218)
T ss_pred EECCCCcEEEEEECChHHHHHHHHHHHH-cCCcHHhhccC--CCCcCCHHHHHHHHHHHh-----CCCChhhcccc
Confidence 4669999999999996788999987776 45777788877 667899999999998886 48999999888
No 34
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=59.11 E-value=73 Score=30.61 Aligned_cols=160 Identities=14% Similarity=0.102 Sum_probs=98.9
Q ss_pred HHHHHHHHCCCcEEEeccccccc--CCCcc----cc----ccccchhhhcCCCeEEE-ecccccccchhhhHhHhhhCCe
Q 023717 77 ATMFFASMVGIPVFVTGGIGGVH--RHGEH----TM----DISSDLTELGRTPVAVV-SAGIKSILDIPRTLEYLETHGV 145 (278)
Q Consensus 77 aTm~lA~~aGI~VFaTGGIGGVH--rg~~~----t~----DiSaDL~eL~rtpV~VV-caG~KsILDi~~TLE~LET~GV 145 (278)
.+..++..+|-+...|.|-+... .|-.. +| +.-.++..-...||+|= =+|--.-+++.+|.+.||..||
T Consensus 27 ~SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~v~r~V~~~~~aGa 106 (294)
T TIGR02319 27 LSAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAVDVPVIMDADAGYGNAMSVWRATREFERVGI 106 (294)
T ss_pred HHHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCC
Confidence 45678888898888887766553 34221 11 11222333445687774 4777888999999999999998
Q ss_pred eEEeecCCCCcceeecCCCCccCcccCCHHHHHHHHHHHHhcC-CCCeEEEEeCCCccCCCChHHHHHHHHHHHHHHHHc
Q 023717 146 CVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLK-LGSGLVIGVPIPREHAASGRVIESAIQSALREAREK 224 (278)
Q Consensus 146 ~V~gy~t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~-l~~g~lvanPiP~e~~~~~~~i~~~i~~Al~ea~~~ 224 (278)
-=+-.....+| ..-|+.-...+-+.+|.++-|++-.+.. -+.-+|++.= ++.....++++|++|.+.++ .
T Consensus 107 agi~IEDq~~p----K~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ART----Da~~~~g~deaI~Ra~aY~e-A 177 (294)
T TIGR02319 107 VGYHLEDQVNP----KRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIART----DARESFGLDEAIRRSREYVA-A 177 (294)
T ss_pred eEEEEECCCCc----cccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEe----cccccCCHHHHHHHHHHHHH-h
Confidence 76666666666 2333333445667777777776555432 2344555552 11223457889998877665 3
Q ss_pred CC-----CCccCChHHHHHHHHHhCCc
Q 023717 225 NI-----TGNAETPFLLARVNELTGGL 246 (278)
Q Consensus 225 gi-----~Gk~vTPflL~~i~elT~G~ 246 (278)
|- .| -.+|--++++.+..++.
T Consensus 178 GAD~ifi~~-~~~~~ei~~~~~~~~~P 203 (294)
T TIGR02319 178 GADCIFLEA-MLDVEEMKRVRDEIDAP 203 (294)
T ss_pred CCCEEEecC-CCCHHHHHHHHHhcCCC
Confidence 33 34 35677777777776553
No 35
>cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial homologs of mammalian GDE4, a transmembrane protein whose cellular function has not been elucidated yet.
Probab=57.90 E-value=80 Score=30.66 Aligned_cols=98 Identities=15% Similarity=0.182 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHCCCcccEEEEEcCceeecCCHHHHHHHHhcCCCcccccccchHH----HHhcCCCchhhHH--------
Q 023717 9 TAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAH----VVATRGNGATTVS-------- 76 (278)
Q Consensus 9 ~A~~~E~~vR~~GavPATIaii~G~i~VGl~~~el~~la~~~~~~~K~srRDl~~----~~a~~~~GaTTVa-------- 76 (278)
....+.+.++++++..-.+..+.+ ..+.|+++.+..++..-.|+.-... +++.+.+|.-.-+
T Consensus 168 ~~~~v~~~i~~~~~~r~~v~sf~s------~~~~l~~~r~l~P~~~~~s~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~v 241 (309)
T cd08613 168 EGELLAEKLATLPRKRLQVLTVYG------GDKPIAALRELTPDLRTLSKASMKDCLIEYLALGWTGYVPDSCRNTTLLI 241 (309)
T ss_pred HHHHHHHHHHhcCccceEEEEEEC------CHHHHHHHHHHCCCCceecccchHHHHHHHHhhcccccCCccccCCeEec
Confidence 457888999999985333333455 3555666544334455555554322 2334444433222
Q ss_pred -------------HHHHHHHHCCCcEEEecc-cccccCCCccccccccchhhh
Q 023717 77 -------------ATMFFASMVGIPVFVTGG-IGGVHRHGEHTMDISSDLTEL 115 (278)
Q Consensus 77 -------------aTm~lA~~aGI~VFaTGG-IGGVHrg~~~t~DiSaDL~eL 115 (278)
.-+.-+|.+|.+|++.|| -|| +..+++|--+|+..|
T Consensus 242 P~~~~~~~~~w~~~f~~~~~~~g~~V~~~~~~~~~---~~~~~~d~~~~~~~l 291 (309)
T cd08613 242 PLNYAPWLWGWPNRFLARMEAAGTRVILVGPYTGG---EFSEGFDTPEDLKRL 291 (309)
T ss_pred CccccceEEeCCHHHHHHHHHcCCeEEEEecccCC---cccCCCCCHHHHHHH
Confidence 345578899999999987 344 444566666555544
No 36
>PRK08185 hypothetical protein; Provisional
Probab=57.43 E-value=44 Score=31.86 Aligned_cols=129 Identities=19% Similarity=0.247 Sum_probs=69.8
Q ss_pred CCCchhHHHHHHHHHHHHHCCCc-ccEEEEEcCceeecCCHHHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHHH
Q 023717 1 MPYPQNFETAKEVEAIVRNNGAV-PATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATM 79 (278)
Q Consensus 1 lPyP~Nle~A~~~E~~vR~~Gav-PATIaii~G~i~VGl~~~el~~la~~~~~~~K~srRDl~~~~a~~~~GaTTVaaTm 79 (278)
|||-+|++.++++-++++..|+- =+=||.+ |..+++. ....| ..--|+..-..
T Consensus 102 l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~v------g~~e~~~---------~~~~~-----------~~~~t~peea~ 155 (283)
T PRK08185 102 LPYEENVALTKEVVELAHKVGVSVEGELGTI------GNTGTSI---------EGGVS-----------EIIYTDPEQAE 155 (283)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEEEeec------cCccccc---------ccccc-----------cccCCCHHHHH
Confidence 68999999999999999998863 2233332 2111100 00001 01134444444
Q ss_pred HHHHHCCCcEEEe--cccccccCCC---ccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCC
Q 023717 80 FFASMVGIPVFVT--GGIGGVHRHG---EHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNE 154 (278)
Q Consensus 80 ~lA~~aGI~VFaT--GGIGGVHrg~---~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~ 154 (278)
...+.-|+..+|- |=.+|++.++ .-.||.=.++.+.-..|++.. |.-.+= ..-+...-..||.=+=++|+-
T Consensus 156 ~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~iPLVlH--Ggsg~~--~e~~~~ai~~GI~KiNi~T~l 231 (283)
T PRK08185 156 DFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVDIPLVLH--GGSANP--DAEIAESVQLGVGKINISSDM 231 (283)
T ss_pred HHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhCCCEEEE--CCCCCC--HHHHHHHHHCCCeEEEeChHH
Confidence 4555556666554 5556666542 224555555554445665333 332221 233555567888888888876
Q ss_pred Cccee
Q 023717 155 FPAFF 159 (278)
Q Consensus 155 fPaFy 159 (278)
+-+|.
T Consensus 232 ~~a~~ 236 (283)
T PRK08185 232 KYAFF 236 (283)
T ss_pred HHHHH
Confidence 55553
No 37
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=57.04 E-value=75 Score=27.66 Aligned_cols=87 Identities=17% Similarity=0.256 Sum_probs=48.0
Q ss_pred HCCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCcceeecCC
Q 023717 84 MVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETS 163 (278)
Q Consensus 84 ~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~S 163 (278)
+.|=+|++|||-||+-+ -+...|.+.+- .|++++.... .+....+.++..|..+..+
T Consensus 8 ~~~k~vlItGa~g~iG~------~ia~~l~~~G~-~V~~~~r~~~---~~~~~~~~i~~~~~~~~~~------------- 64 (255)
T PRK07523 8 LTGRRALVTGSSQGIGY------ALAEGLAQAGA-EVILNGRDPA---KLAAAAESLKGQGLSAHAL------------- 64 (255)
T ss_pred CCCCEEEEECCcchHHH------HHHHHHHHcCC-EEEEEeCCHH---HHHHHHHHHHhcCceEEEE-------------
Confidence 45668999999999944 67777777654 3554443322 2233444555444333222
Q ss_pred CCccCcccCCHHHHHHHHHHHH-hcCCCCeEEEEeC
Q 023717 164 GSKVPCRVDSPEDCARLIDVNM-KLKLGSGLVIGVP 198 (278)
Q Consensus 164 g~~~~~r~d~~~e~A~~~~~~~-~l~l~~g~lvanP 198 (278)
+..+.+++++.+++..-. .++-.. +||.|.
T Consensus 65 ----~~D~~~~~~~~~~~~~~~~~~~~~d-~li~~a 95 (255)
T PRK07523 65 ----AFDVTDHDAVRAAIDAFEAEIGPID-ILVNNA 95 (255)
T ss_pred ----EccCCCHHHHHHHHHHHHHhcCCCC-EEEECC
Confidence 223567777777776433 344333 344443
No 38
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=57.00 E-value=5.2 Score=36.30 Aligned_cols=26 Identities=35% Similarity=0.581 Sum_probs=19.7
Q ss_pred EEecccccccchhhhHhH----hhhCCeeE
Q 023717 122 VVSAGIKSILDIPRTLEY----LETHGVCV 147 (278)
Q Consensus 122 VVcaG~KsILDi~~TLE~----LET~GV~V 147 (278)
+||+|+||+=|+.++++. |...|+.+
T Consensus 64 ~VcTGaKs~ed~~~av~~~~~~L~~~g~~~ 93 (185)
T COG2101 64 VVCTGAKSVEDVHRAVKKLAKKLKDGGIDI 93 (185)
T ss_pred EEEeccCcHHHHHHHHHHHHHHHHhcCcCc
Confidence 699999999998887764 45555544
No 39
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=56.72 E-value=19 Score=29.31 Aligned_cols=76 Identities=14% Similarity=0.030 Sum_probs=55.4
Q ss_pred HHHHHHHHHHCCCcEEEecccccccCCCccccccccchhhhcCC---CeEEEecccccccchhhhHhHhhhCCeeEEeec
Q 023717 75 VSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRT---PVAVVSAGIKSILDIPRTLEYLETHGVCVAAYK 151 (278)
Q Consensus 75 VaaTm~lA~~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rt---pV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~ 151 (278)
...-...-+..|+.+.-..+..--.+-....+.+..|+.+++.. .++|++||=. |.--.++.|..+|..|+.++
T Consensus 54 ~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~---Df~~~i~~lr~~G~~V~v~~ 130 (149)
T cd06167 54 QRGFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELAYKRRIDTIVLVSGDS---DFVPLVERLRELGKRVIVVG 130 (149)
T ss_pred HHHHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHhhhcCCCEEEEEECCc---cHHHHHHHHHHcCCEEEEEc
Confidence 34555666778988887766531001122356678899998877 4899999987 77888999999999999998
Q ss_pred CC
Q 023717 152 TN 153 (278)
Q Consensus 152 t~ 153 (278)
..
T Consensus 131 ~~ 132 (149)
T cd06167 131 FE 132 (149)
T ss_pred cC
Confidence 54
No 40
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=56.12 E-value=12 Score=31.12 Aligned_cols=64 Identities=22% Similarity=0.265 Sum_probs=44.7
Q ss_pred CCCcEEEecccccccCCCccccc-cccchhhhcCCCeEEE-ecccccccchhhhHhHhhhCCeeEEee
Q 023717 85 VGIPVFVTGGIGGVHRHGEHTMD-ISSDLTELGRTPVAVV-SAGIKSILDIPRTLEYLETHGVCVAAY 150 (278)
Q Consensus 85 aGI~VFaTGGIGGVHrg~~~t~D-iSaDL~eL~rtpV~VV-caG~KsILDi~~TLE~LET~GV~V~gy 150 (278)
.+-.+.+--|.||.+.+.. .+ .-+|+...=..||++| -.+..+|=++-.+.++|++.|+++.|+
T Consensus 98 ~~~D~viid~~g~~~~~~~--~~~~~~dl~~~~~~~vilV~~~~~~~~~~~~~~~~~l~~~~~~i~gv 163 (166)
T TIGR00347 98 QKYDFVLVEGAGGLCVPIT--EEYTTADLIKLLQLPVILVVRVKLGTINHTLLTVEHARQTGLTLAGV 163 (166)
T ss_pred hcCCEEEEEcCCccccCCC--CCCcHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHHHHHCCCCeEEE
Confidence 4556677666677765432 23 3556665446675555 456778888899999999999999986
No 41
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=55.67 E-value=49 Score=29.29 Aligned_cols=137 Identities=23% Similarity=0.234 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHC--CCcc--cEEEEEcCceeecCCHHHHHHHHhcCCCcccccccchHHHHhc-CCCchhhHHHHHHHHH
Q 023717 9 TAKEVEAIVRNN--GAVP--ATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVAT-RGNGATTVSATMFFAS 83 (278)
Q Consensus 9 ~A~~~E~~vR~~--GavP--ATIaii~G~i~VGl~~~el~~la~~~~~~~K~srRDl~~~~a~-~~~GaTTVaaTm~lA~ 83 (278)
++..+++.++.. |--. .+|+|+..- +||..-. ++|.+.+-++. ++-++-..+-.- ...|++.+.. -.+..
T Consensus 9 v~~~~~~~~~~~~~~~~l~gk~v~I~G~G-~vG~~~A--~~L~~~G~~Vv-v~D~~~~~~~~~~~~~g~~~v~~-~~l~~ 83 (200)
T cd01075 9 VFLGMKAAAEHLLGTDSLEGKTVAVQGLG-KVGYKLA--EHLLEEGAKLI-VADINEEAVARAAELFGATVVAP-EEIYS 83 (200)
T ss_pred HHHHHHHHHHHhcCCCCCCCCEEEEECCC-HHHHHHH--HHHHHCCCEEE-EEcCCHHHHHHHHHHcCCEEEcc-hhhcc
Confidence 445567777774 3333 588888533 6776543 34555543444 444443322111 1124544432 11111
Q ss_pred HCCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCcceeecCC
Q 023717 84 MVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETS 163 (278)
Q Consensus 84 ~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~S 163 (278)
...+|++.+.+|++ |..|.. .+-..=+|+.|+.+=+.=+.--+.|+..||.++ |.|.+...
T Consensus 84 -~~~Dv~vp~A~~~~---------I~~~~~--~~l~~~~v~~~AN~~~~~~~~~~~L~~~Gi~~~-------Pd~~~NaG 144 (200)
T cd01075 84 -VDADVFAPCALGGV---------INDDTI--PQLKAKAIAGAANNQLADPRHGQMLHERGILYA-------PDYVVNAG 144 (200)
T ss_pred -ccCCEEEecccccc---------cCHHHH--HHcCCCEEEECCcCccCCHhHHHHHHHCCCEEe-------CceeeeCc
Confidence 25788888888763 222222 222345677777776654788999999999988 99999888
Q ss_pred CCccCc
Q 023717 164 GSKVPC 169 (278)
Q Consensus 164 g~~~~~ 169 (278)
|+-..|
T Consensus 145 Gv~~~~ 150 (200)
T cd01075 145 GLINVA 150 (200)
T ss_pred Cceeeh
Confidence 888765
No 42
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=55.27 E-value=86 Score=27.99 Aligned_cols=13 Identities=31% Similarity=0.682 Sum_probs=10.5
Q ss_pred cEEEecccccccC
Q 023717 88 PVFVTGGIGGVHR 100 (278)
Q Consensus 88 ~VFaTGGIGGVHr 100 (278)
+|++|||.|.|-+
T Consensus 1 ~ilVtGatG~iG~ 13 (285)
T TIGR03649 1 TILLTGGTGKTAS 13 (285)
T ss_pred CEEEEcCCChHHH
Confidence 4899999998844
No 43
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=55.13 E-value=73 Score=27.17 Aligned_cols=78 Identities=22% Similarity=0.290 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHCCCcccEEEEEcCceeecCCHHHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHHHHHHHHCCC
Q 023717 8 ETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGI 87 (278)
Q Consensus 8 e~A~~~E~~vR~~GavPATIaii~G~i~VGl~~~el~~la~~~~~~~K~srRDl~~~~a~~~~GaTTVaaTm~lA~~aGI 87 (278)
+.+.+.=+..|+.|. .|++ |+ +|.....++.|.....+.+|+++.-+.... ........+.+-..+|+..||
T Consensus 133 ~~~~~~i~~l~~~G~---~ial-dd---fg~~~~~~~~l~~l~~d~iKld~~~~~~~~-~~~~~~~~l~~l~~~~~~~~~ 204 (241)
T smart00052 133 ESAVATLQRLRELGV---RIAL-DD---FGTGYSSLSYLKRLPVDLLKIDKSFVRDLQ-TDPEDEAIVQSIIELAQKLGL 204 (241)
T ss_pred HHHHHHHHHHHHCCC---EEEE-eC---CCCcHHHHHHHHhCCCCeEEECHHHHhhhc-cChhHHHHHHHHHHHHHHCCC
Confidence 334344455677776 4654 43 788888888887665567898876554432 233345667788889999999
Q ss_pred cEEEec
Q 023717 88 PVFVTG 93 (278)
Q Consensus 88 ~VFaTG 93 (278)
+|.|+|
T Consensus 205 ~via~g 210 (241)
T smart00052 205 QVVAEG 210 (241)
T ss_pred eEEEec
Confidence 999985
No 44
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=54.95 E-value=1.7e+02 Score=28.13 Aligned_cols=138 Identities=16% Similarity=0.166 Sum_probs=85.6
Q ss_pred HHHHHHHHCCCcEEEeccccc--ccCCCcc----ccc----cccchhhhcCCCeEEEe-cccccccchhhhHhHhhhCCe
Q 023717 77 ATMFFASMVGIPVFVTGGIGG--VHRHGEH----TMD----ISSDLTELGRTPVAVVS-AGIKSILDIPRTLEYLETHGV 145 (278)
Q Consensus 77 aTm~lA~~aGI~VFaTGGIGG--VHrg~~~----t~D----iSaDL~eL~rtpV~VVc-aG~KsILDi~~TLE~LET~GV 145 (278)
.+..++..+|.+...|.|-|= -..|... ||| .-.++..-...||+|=+ +|-=+.+++.+|.+.||..||
T Consensus 28 ~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~aGa 107 (292)
T PRK11320 28 YHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPLLVDIDTGFGGAFNIARTVKSMIKAGA 107 (292)
T ss_pred HHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCC
Confidence 446788899999888877542 2334221 111 11222333455876643 564599999999999999998
Q ss_pred eEEeecCCCCcceeecCCCCccCcccCCHHHHHHHHHHHHhcCC-CCeEEEEeCCCccCCCChHHHHHHHHHHHHHHH
Q 023717 146 CVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKL-GSGLVIGVPIPREHAASGRVIESAIQSALREAR 222 (278)
Q Consensus 146 ~V~gy~t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l-~~g~lvanPiP~e~~~~~~~i~~~i~~Al~ea~ 222 (278)
-=+-.....||- .-|+.-...+-+++|.++-|++-.+..- +.-+|++.= ++.....++++|++|.+.++
T Consensus 108 agi~IEDq~~pK----~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiART----Da~~~~g~deAI~Ra~aY~e 177 (292)
T PRK11320 108 AAVHIEDQVGAK----RCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMART----DALAVEGLDAAIERAQAYVE 177 (292)
T ss_pred eEEEEecCCCcc----ccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEec----CcccccCHHHHHHHHHHHHH
Confidence 766666666662 2244334567788888887776555432 334555552 12223347899998877665
No 45
>PRK15108 biotin synthase; Provisional
Probab=54.20 E-value=1e+02 Score=29.72 Aligned_cols=106 Identities=14% Similarity=0.155 Sum_probs=60.9
Q ss_pred HHHHHHCCCcEEEecccccccCCCccccccccchhhhcC-CCe-EEEecccccccchhhhHhHhhhCCeeEEeecCCCCc
Q 023717 79 MFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGR-TPV-AVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFP 156 (278)
Q Consensus 79 m~lA~~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~r-tpV-~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fP 156 (278)
+..+...||+=| ++|.||-|. ....+|.=.|+...-+ ..+ +.+|.| .|+ +..++.|...||--+.-.-+.-|
T Consensus 85 a~~~~~~G~~~i-~i~~~g~~p-~~~~~e~i~~~i~~ik~~~i~v~~s~G---~ls-~e~l~~LkeAGld~~n~~leT~p 158 (345)
T PRK15108 85 ARKAKAAGSTRF-CMGAAWKNP-HERDMPYLEQMVQGVKAMGLETCMTLG---TLS-ESQAQRLANAGLDYYNHNLDTSP 158 (345)
T ss_pred HHHHHHcCCCEE-EEEecCCCC-CcchHHHHHHHHHHHHhCCCEEEEeCC---cCC-HHHHHHHHHcCCCEEeeccccCh
Confidence 344556799887 666666432 1234444445543332 332 235666 467 99999999999998888744469
Q ss_pred ceeecCCCCccCcccCCHHHHHHHHHHHHhcCC--CCeEEEE
Q 023717 157 AFFTETSGSKVPCRVDSPEDCARLIDVNMKLKL--GSGLVIG 196 (278)
Q Consensus 157 aFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l--~~g~lva 196 (278)
.||-+-- .-++.++.-+.++.-.++|+ .+|+||.
T Consensus 159 ~~f~~I~------~~~~~~~rl~~i~~a~~~G~~v~sg~i~G 194 (345)
T PRK15108 159 EFYGNII------TTRTYQERLDTLEKVRDAGIKVCSGGIVG 194 (345)
T ss_pred HhcCCCC------CCCCHHHHHHHHHHHHHcCCceeeEEEEe
Confidence 9996432 11244444444444444433 3455555
No 46
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=53.85 E-value=26 Score=33.10 Aligned_cols=78 Identities=24% Similarity=0.268 Sum_probs=52.7
Q ss_pred cccccccchhhhHhHhh-----------hCCeeEEeecCC----------CCcceeecCCCCccCcccCCHHHHHHHHHH
Q 023717 125 AGIKSILDIPRTLEYLE-----------THGVCVAAYKTN----------EFPAFFTETSGSKVPCRVDSPEDCARLIDV 183 (278)
Q Consensus 125 aG~KsILDi~~TLE~LE-----------T~GV~V~gy~t~----------~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~ 183 (278)
-|. .|+||.+|+|.|. -.+|.++|-+.. .+-+||.. |.-+|+.+.+..
T Consensus 44 dGi-~IIdL~kT~~~L~~Aa~~i~~i~~~~~Il~Vstr~~~~~~V~k~A~~tg~~~i~--~Rw~pGtlTN~~-------- 112 (249)
T PTZ00254 44 EGV-HIINLAKTWEKLKLAARVIAAIENPADVVVVSSRPYGQRAVLKFAQYTGASAIA--GRFTPGTFTNQI-------- 112 (249)
T ss_pred CCC-EEEcHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCHHHHHHHHHHHHHhCCeEEC--CcccCCCCCCcc--------
Confidence 344 7999999999994 456778877641 13345533 235666666652
Q ss_pred HHhcCCCCeEEEEeCCCccCCCChHHHHHHHHHHHHHHHHcCC
Q 023717 184 NMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNI 226 (278)
Q Consensus 184 ~~~l~l~~g~lvanPiP~e~~~~~~~i~~~i~~Al~ea~~~gi 226 (278)
+..+.+|.-++|.+|--+ .+|+.||...||
T Consensus 113 ~~~f~~P~llIV~Dp~~d-------------~qAI~EA~~lnI 142 (249)
T PTZ00254 113 QKKFMEPRLLIVTDPRTD-------------HQAIREASYVNI 142 (249)
T ss_pred ccccCCCCEEEEeCCCcc-------------hHHHHHHHHhCC
Confidence 234578999999998333 378888988887
No 47
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=53.56 E-value=38 Score=24.20 Aligned_cols=44 Identities=16% Similarity=0.399 Sum_probs=33.1
Q ss_pred eEEEecccccccc-hhhhHhHhhhCCeeEEeecCCCCcceeecCCCCccCcccCC
Q 023717 120 VAVVSAGIKSILD-IPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDS 173 (278)
Q Consensus 120 V~VVcaG~KsILD-i~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~~~~~r~d~ 173 (278)
|.||+.|.+..-. ..+-++.|+.+|++|..+.+ |...+.+-+++
T Consensus 4 isvvG~~~~~~~gi~~~if~aL~~~~I~v~~~~~----------Se~~is~~v~~ 48 (64)
T cd04937 4 VTIIGSRIRGVPGVMAKIVGALSKEGIEILQTAD----------SHTTISCLVSE 48 (64)
T ss_pred EEEECCCccCCcCHHHHHHHHHHHCCCCEEEEEc----------CccEEEEEEcH
Confidence 7788888877666 45889999999999986553 56666655554
No 48
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=53.23 E-value=28 Score=31.81 Aligned_cols=77 Identities=19% Similarity=0.154 Sum_probs=50.5
Q ss_pred ccccchhhhHhHhhhC----------CeeEEeecCC----------CCcceeecCCCCccCcccCCHHHHHHHHHHHHhc
Q 023717 128 KSILDIPRTLEYLETH----------GVCVAAYKTN----------EFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKL 187 (278)
Q Consensus 128 KsILDi~~TLE~LET~----------GV~V~gy~t~----------~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l 187 (278)
..|+|+.+|+++|... .|.+||-+.. .+-.||..+ ..+|+.+.+... ...
T Consensus 43 i~IIdL~kT~~~L~~A~~~i~~~~~~~ILfVgTk~~~~~~v~k~A~~~g~~~v~~--RWlgG~LTN~~~--------~~~ 112 (204)
T PRK04020 43 LYVLDVRKTDERIRIAAKFLSRYEPEKILVVSSRQYGQKPVQKFAEVVGAKAITG--RFIPGTLTNPSL--------KGY 112 (204)
T ss_pred CEEEcHHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHhCCeeecC--ccCCCcCcCcch--------hcc
Confidence 3799999999999653 4556655431 234555433 345666665541 223
Q ss_pred CCCCeEEEEeCCCccCCCChHHHHHHHHHHHHHHHHcCCC
Q 023717 188 KLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNIT 227 (278)
Q Consensus 188 ~l~~g~lvanPiP~e~~~~~~~i~~~i~~Al~ea~~~gi~ 227 (278)
-+|.-++|.+|.-+ .+|+.||...||-
T Consensus 113 ~~Pdliiv~dp~~~-------------~~AI~EA~kl~IP 139 (204)
T PRK04020 113 IEPDVVVVTDPRGD-------------AQAVKEAIEVGIP 139 (204)
T ss_pred CCCCEEEEECCccc-------------HHHHHHHHHhCCC
Confidence 48999999998443 5788999988883
No 49
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=52.94 E-value=32 Score=33.73 Aligned_cols=137 Identities=26% Similarity=0.323 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHHHHCCCcccEEEEE--cCceeecCCHHHHHHHHhc-CCCcccccccchH--HHHhcCCCchhhH---HH
Q 023717 6 NFETAKEVEAIVRNNGAVPATIAIL--EGLPCVGLSTEELERLAKL-GSKAQKTARRDIA--HVVATRGNGATTV---SA 77 (278)
Q Consensus 6 Nle~A~~~E~~vR~~GavPATIaii--~G~i~VGl~~~el~~la~~-~~~~~K~srRDl~--~~~a~~~~GaTTV---aa 77 (278)
+.+-|.++=+++=+.-+-|+-||=+ -=++ =|-+.+||.-+++. .+...++...+.. ..+..+.+|.-|. -+
T Consensus 18 ~~~eA~~l~~~il~g~~~~~qi~A~L~Alr~-Kget~eEi~G~~~am~~~~~~~~~p~~~~vDi~GTGGDg~~T~NiSt~ 96 (338)
T COG0547 18 DREEARELFKAILSGEASPAQIGAFLTALRI-KGETPEEIAGFAEAMREHAPKLPVPAADPVDIVGTGGDGANTINISTA 96 (338)
T ss_pred CHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhcccCCCCCCCCCCeecCCCCCCCcccchHH
Confidence 3455555555555555556555432 1122 27789999888753 1223455555433 5677888888764 46
Q ss_pred HHHHHHHCCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCcc
Q 023717 78 TMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPA 157 (278)
Q Consensus 78 Tm~lA~~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPa 157 (278)
++++++.+|+||.--|+=. ..+--=|+|+-| +-|+.=-++..+..+.|++.|+.-+ |-...+|+
T Consensus 97 aA~v~A~~Gv~VaKHGnrs------~sSksGsaDvle---------aLGv~l~~~~e~~~~~l~~~g~~Fl-fAp~~hp~ 160 (338)
T COG0547 97 AAIVAAAAGVPVAKHGNRS------VSSKSGSADVLE---------ALGVNLELSPEQAARALEETGIGFL-FAPAYHPA 160 (338)
T ss_pred HHHHHHhCCCcEEeECCCC------CCCCCcHHHHHH---------HcCCCCCCCHHHHHHHHHhcCeEEE-EccccCHH
Confidence 6899999999999988533 223344688777 4466666788889999999998766 66666676
Q ss_pred ee
Q 023717 158 FF 159 (278)
Q Consensus 158 Fy 159 (278)
|.
T Consensus 161 ~k 162 (338)
T COG0547 161 MK 162 (338)
T ss_pred HH
Confidence 64
No 50
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=52.60 E-value=65 Score=28.46 Aligned_cols=73 Identities=15% Similarity=0.150 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHCCCcEEEec--ccccc-cCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEe
Q 023717 73 TTVSATMFFASMVGIPVFVTG--GIGGV-HRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAA 149 (278)
Q Consensus 73 TTVaaTm~lA~~aGI~VFaTG--GIGGV-Hrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~g 149 (278)
+|+.- +..+..+|...+.+. |..+- |......++....+.+.-+.||++. .|.++- .+++.+-..|.--+.
T Consensus 131 ~t~~e-a~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~-GGI~~~----~~~~~~l~~GadgV~ 204 (219)
T cd04729 131 STLEE-ALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAE-GRINSP----EQAAKALELGADAVV 204 (219)
T ss_pred CCHHH-HHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEe-CCCCCH----HHHHHHHHCCCCEEE
Confidence 34433 355566777766543 33221 1111234555666665556676643 365544 333333335555555
Q ss_pred ec
Q 023717 150 YK 151 (278)
Q Consensus 150 y~ 151 (278)
.+
T Consensus 205 vG 206 (219)
T cd04729 205 VG 206 (219)
T ss_pred Ec
Confidence 54
No 51
>PF00591 Glycos_transf_3: Glycosyl transferase family, a/b domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR000312 The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1V8G_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 3H5Q_A 1KHD_A 1KGZ_B 1AZY_A 1OTP_A ....
Probab=51.64 E-value=15 Score=33.41 Aligned_cols=116 Identities=26% Similarity=0.358 Sum_probs=72.2
Q ss_pred hcCCCchhh---HHHHHHHHHHCCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhh
Q 023717 66 ATRGNGATT---VSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLET 142 (278)
Q Consensus 66 a~~~~GaTT---VaaTm~lA~~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET 142 (278)
..|.+|.-| -.+..+++..+|+||+-.|+=+=-++.+ |+|+-| +-|.+-=++.....+.||+
T Consensus 8 gTGGd~~~t~niSt~~a~vlAa~G~~V~kHG~r~~~~~~G------s~dvLe---------~LGv~~~~~~~~~~~~l~~ 72 (252)
T PF00591_consen 8 GTGGDGDKTFNISTAAAIVLAAAGVPVAKHGNRGVTSKSG------SADVLE---------ALGVPIDLSPEEAQAQLEE 72 (252)
T ss_dssp ESSCSSSTBHHHHHHHHHHHHHTTSEEEEEEESGCTTSSS------HHHHHH---------HSTB-TT--HHHHHHHHHH
T ss_pred cCCCCCCCceehHHHHHHHHHccCCcEecccCCCcccccc------HHHHHH---------hcCCCcCCCHHHHHHHhhc
Confidence 345566655 3345677778899999999765444544 677777 3466555788888999999
Q ss_pred CCeeEEeecCCCCcceee-----cCCCCccCc-----------------ccCCHHHHHHHHHHHHhcCCCCeEEEEe
Q 023717 143 HGVCVAAYKTNEFPAFFT-----ETSGSKVPC-----------------RVDSPEDCARLIDVNMKLKLGSGLVIGV 197 (278)
Q Consensus 143 ~GV~V~gy~t~~fPaFy~-----~~Sg~~~~~-----------------r~d~~~e~A~~~~~~~~l~l~~g~lvan 197 (278)
+|+.-+ |..+.+|++.. +.=|++..+ -+-+++-+..+...-..+|.+.+++|--
T Consensus 73 ~g~~fl-~~~~~~p~~~~l~~~R~~lg~rT~~N~l~pL~nP~~~~~~v~Gv~~~~~~~~~~~~~~~lg~~~~~vv~G 148 (252)
T PF00591_consen 73 TGIAFL-FAPNFHPALKRLAPVRRELGIRTVFNTLGPLLNPANAKHQVIGVFHPEYAELMAEALRDLGYGRALVVKG 148 (252)
T ss_dssp HSEEEE-EHHHHSGGHHHHHHHHHHHTS--SHHHHGHHHHTT--SEEEEEHSCHHHHHHHHHHHCCETESEEEEEEE
T ss_pred cCeEEe-cchhcCcchHHHHHHHHHcCCCCHHHhhhhhcCCcCCCcEEEEEeCHHHHHHHHHHHHhCCCceEEEEec
Confidence 998865 66777777532 122333222 2235555555666666677777777655
No 52
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=51.55 E-value=88 Score=27.98 Aligned_cols=92 Identities=10% Similarity=0.088 Sum_probs=53.8
Q ss_pred chhhhHhHhhhCCeeEEeecCCCCcceeec-CCCCccCcccCCHHHHHHHHHHHHhcCCCCeEEEEeCCCccCCCCh---
Q 023717 132 DIPRTLEYLETHGVCVAAYKTNEFPAFFTE-TSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASG--- 207 (278)
Q Consensus 132 Di~~TLE~LET~GV~V~gy~t~~fPaFy~~-~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~--- 207 (278)
++..--+.++.+|+.|.++.+..- .|+.. .++-+ ..|-+..+.+.+.++.-..||.+ .++..|....+.-+.
T Consensus 48 ~~~~l~~~~~~~gl~v~s~~~~~~-~~~~~~~~~~~-~~r~~~~~~~~~~i~~a~~lGa~--~i~~~~~~~~~~~~~~~~ 123 (275)
T PRK09856 48 GIKQIKALAQTYQMPIIGYTPETN-GYPYNMMLGDE-HMRRESLDMIKLAMDMAKEMNAG--YTLISAAHAGYLTPPNVI 123 (275)
T ss_pred HHHHHHHHHHHcCCeEEEecCccc-CcCccccCCCH-HHHHHHHHHHHHHHHHHHHhCCC--EEEEcCCCCCCCCCHHHH
Confidence 456667789999999999875221 11110 11101 12334456777778888888755 455555432222222
Q ss_pred -HHHHHHHHHHHHHHHHcCCC
Q 023717 208 -RVIESAIQSALREAREKNIT 227 (278)
Q Consensus 208 -~~i~~~i~~Al~ea~~~gi~ 227 (278)
+.+-+.+++....|++.||+
T Consensus 124 ~~~~~~~l~~l~~~a~~~gv~ 144 (275)
T PRK09856 124 WGRLAENLSELCEYAENIGMD 144 (275)
T ss_pred HHHHHHHHHHHHHHHHHcCCE
Confidence 34445677778888999985
No 53
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=51.52 E-value=23 Score=32.21 Aligned_cols=78 Identities=23% Similarity=0.254 Sum_probs=52.3
Q ss_pred ccccccchhhhHhHhhhC----------CeeEEeecCC----------CCcceeecCCCCccCcccCCHHHHHHHHHHHH
Q 023717 126 GIKSILDIPRTLEYLETH----------GVCVAAYKTN----------EFPAFFTETSGSKVPCRVDSPEDCARLIDVNM 185 (278)
Q Consensus 126 G~KsILDi~~TLE~LET~----------GV~V~gy~t~----------~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~ 185 (278)
|. .|+|+.+|+++|+.. .|.++|-+.. .+-+||..+ ..+|+.+.+..+ .
T Consensus 36 gi-~IIdL~kT~~~L~~A~~~i~~i~~~~ILfVgtk~~~~~~V~~~A~~~g~~~v~~--RWlgGtLTN~~~--------~ 104 (196)
T TIGR01012 36 GL-YVLDLRKTDERLRVAAKFLVRIEPEDILVVSARIYGQKPVLKFAKVTGARAIAG--RFTPGTFTNPMQ--------K 104 (196)
T ss_pred CC-EEEcHHHHHHHHHHHHHHHHHhhCCeEEEEecCHHHHHHHHHHHHHhCCceECC--eeCCCCCCCccc--------c
Confidence 44 899999999999754 4666665531 233555332 356666666543 2
Q ss_pred hcCCCCeEEEEeCCCccCCCChHHHHHHHHHHHHHHHHcCCC
Q 023717 186 KLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNIT 227 (278)
Q Consensus 186 ~l~l~~g~lvanPiP~e~~~~~~~i~~~i~~Al~ea~~~gi~ 227 (278)
...+|.-++|.+|.-+ .+|++||...||-
T Consensus 105 ~~~~Pdlliv~dp~~~-------------~~Av~EA~~l~IP 133 (196)
T TIGR01012 105 AFREPEVVVVTDPRAD-------------HQALKEASEVGIP 133 (196)
T ss_pred ccCCCCEEEEECCccc-------------cHHHHHHHHcCCC
Confidence 4678999999988433 3688899988883
No 54
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=51.40 E-value=73 Score=31.18 Aligned_cols=85 Identities=20% Similarity=0.212 Sum_probs=53.7
Q ss_pred ccccchhhhHhHhhh----------CC--eeEEeecCC----------CCcceeecCCCCccCcccCCHHHHHHHHH---
Q 023717 128 KSILDIPRTLEYLET----------HG--VCVAAYKTN----------EFPAFFTETSGSKVPCRVDSPEDCARLID--- 182 (278)
Q Consensus 128 KsILDi~~TLE~LET----------~G--V~V~gy~t~----------~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~--- 182 (278)
-.|+|+.+|+++|+. +| |-.||-+.. .+-.||..+ ..+++.+.+...+-..++
T Consensus 33 ihIIDL~kT~~~L~~A~~~i~~~~~~gg~iLfVgTk~~~~~~V~~~A~~~g~~yV~~--RWlgG~LTN~~ti~~si~~l~ 110 (326)
T PRK12311 33 IHIIDLAQTVPLLHRALQAVSDTVAKGGRVLFVGTKRQAQDAVADAAKRSAQYFVNS--RWLGGTLTNWKTISGSIQRLR 110 (326)
T ss_pred cEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHHHHHHhCCeeeCC--eecCcccCCHHHHHHHHHHHH
Confidence 479999999999864 23 334443321 244566533 356666666665544332
Q ss_pred ------------------------HHHhc-----------CCCCeEEEEeCCCccCCCChHHHHHHHHHHHHHHHHcCCC
Q 023717 183 ------------------------VNMKL-----------KLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNIT 227 (278)
Q Consensus 183 ------------------------~~~~l-----------~l~~g~lvanPiP~e~~~~~~~i~~~i~~Al~ea~~~gi~ 227 (278)
.+.+| ++|..++|.+|.-+ ..|++||...||-
T Consensus 111 ~l~~~~~~~~~~~~~kke~~~~~r~~~kl~k~l~Gi~~m~~~Pd~viv~d~~~e-------------~~AI~EA~kl~IP 177 (326)
T PRK12311 111 KLDEVLSSGEANGYTKKERLTLQRERDKLDRALGGIKDMGGLPDLLFVIDTNKE-------------DIAIQEAQRLGIP 177 (326)
T ss_pred HHHHHhhcCccccCCHHHHHHHHHHHHHHHHhccchhhcccCCCEEEEeCCccc-------------hHHHHHHHHcCCC
Confidence 12222 37999999998643 5788999999983
No 55
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=50.91 E-value=69 Score=29.65 Aligned_cols=69 Identities=17% Similarity=0.142 Sum_probs=39.9
Q ss_pred HHHHHHHHCCC-cEEEeccccccc-----CCCcccccccc-chhhhc----CCCeEEEecccccccchhhhHhHhhhCCe
Q 023717 77 ATMFFASMVGI-PVFVTGGIGGVH-----RHGEHTMDISS-DLTELG----RTPVAVVSAGIKSILDIPRTLEYLETHGV 145 (278)
Q Consensus 77 aTm~lA~~aGI-~VFaTGGIGGVH-----rg~~~t~DiSa-DL~eL~----rtpV~VVcaG~KsILDi~~TLE~LET~GV 145 (278)
.++.+|+..|. +|++|..----+ .|+...+|... |+.++- ...+++=|+|.++- +...++.|...|.
T Consensus 184 ~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~~~--~~~~~~~l~~~G~ 261 (343)
T PRK09880 184 LIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHPSS--INTCLEVTRAKGV 261 (343)
T ss_pred HHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCHHH--HHHHHHHhhcCCE
Confidence 44678888898 588775311000 13333344322 233322 24689999997643 4567888988886
Q ss_pred eE
Q 023717 146 CV 147 (278)
Q Consensus 146 ~V 147 (278)
-|
T Consensus 262 iv 263 (343)
T PRK09880 262 MV 263 (343)
T ss_pred EE
Confidence 55
No 56
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=50.89 E-value=18 Score=31.55 Aligned_cols=64 Identities=23% Similarity=0.282 Sum_probs=44.5
Q ss_pred CCcEEEecccccccCCCccccc-cccchhhhcCCCeEEEe-cccccccchhhhHhHhhhCCeeEEeec
Q 023717 86 GIPVFVTGGIGGVHRHGEHTMD-ISSDLTELGRTPVAVVS-AGIKSILDIPRTLEYLETHGVCVAAYK 151 (278)
Q Consensus 86 GI~VFaTGGIGGVHrg~~~t~D-iSaDL~eL~rtpV~VVc-aG~KsILDi~~TLE~LET~GV~V~gy~ 151 (278)
+=++.+-=|.||.+.+.. .+ ..+|+..--+.||++|+ .+..+|-+.-.++++|+..|+++.|+=
T Consensus 103 ~~D~viIEg~gg~~~~~~--~~~~~adl~~~l~~pvilV~~~~~~~i~~~~~~i~~l~~~~~~i~gvI 168 (222)
T PRK00090 103 QYDLVLVEGAGGLLVPLT--EDLTLADLAKQLQLPVILVVGVKLGCINHTLLTLEAIRARGLPLAGWV 168 (222)
T ss_pred hCCEEEEECCCceeccCC--CCCcHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHHHHHCCCCeEEEE
Confidence 345556555667765542 23 45788877788987765 445566667889999999999988864
No 57
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=50.38 E-value=1e+02 Score=28.32 Aligned_cols=74 Identities=15% Similarity=0.248 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHHHCCC-cEEEeccccccc-----CCCcccc-----ccccchhhhcC---CCeEEEecccccccchhhhH
Q 023717 72 ATTVSATMFFASMVGI-PVFVTGGIGGVH-----RHGEHTM-----DISSDLTELGR---TPVAVVSAGIKSILDIPRTL 137 (278)
Q Consensus 72 aTTVaaTm~lA~~aGI-~VFaTGGIGGVH-----rg~~~t~-----DiSaDL~eL~r---tpV~VVcaG~KsILDi~~TL 137 (278)
+..-..+..+|+..|+ +|++|..--.-+ .|+...+ |...++.++.. ..+++-|+|... .++..+
T Consensus 182 g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~~g~~~--~~~~~~ 259 (351)
T cd08233 182 GPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFDCAGVQA--TLDTAI 259 (351)
T ss_pred CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEECCCCHH--HHHHHH
Confidence 3455567889999999 788885311000 0222222 33344555543 568888888544 246677
Q ss_pred hHhhhCCeeE
Q 023717 138 EYLETHGVCV 147 (278)
Q Consensus 138 E~LET~GV~V 147 (278)
..|...|.-+
T Consensus 260 ~~l~~~G~~v 269 (351)
T cd08233 260 DALRPRGTAV 269 (351)
T ss_pred HhccCCCEEE
Confidence 7888777533
No 58
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=49.31 E-value=14 Score=32.47 Aligned_cols=57 Identities=12% Similarity=0.148 Sum_probs=42.8
Q ss_pred cccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeec
Q 023717 95 IGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYK 151 (278)
Q Consensus 95 IGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~ 151 (278)
|+|++...-.+-+.-+++..=++-|+++|-.|+++==....-.++.|..|+||+.-.
T Consensus 6 ~~g~~~a~~~~p~~aa~lLk~AKRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~ 62 (162)
T TIGR00315 6 ISGPKHATLVSPKLVAMMIKRAKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATA 62 (162)
T ss_pred cCCcccccccCHHHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcC
Confidence 456666544566777788888999999999999754446667788889999998643
No 59
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=49.18 E-value=68 Score=25.77 Aligned_cols=89 Identities=20% Similarity=0.269 Sum_probs=51.5
Q ss_pred EEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCcceeecCCCCccC
Q 023717 89 VFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVP 168 (278)
Q Consensus 89 VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~~~~ 168 (278)
|.+|||-+|+-+ .+..-|.+-+-..|++++-. .+.=....+...|+..|..+..+..|
T Consensus 3 ~lItGa~~giG~------~~a~~l~~~g~~~v~~~~r~-~~~~~~~~l~~~l~~~~~~~~~~~~D--------------- 60 (167)
T PF00106_consen 3 VLITGASSGIGR------ALARALARRGARVVILTSRS-EDSEGAQELIQELKAPGAKITFIECD--------------- 60 (167)
T ss_dssp EEEETTTSHHHH------HHHHHHHHTTTEEEEEEESS-CHHHHHHHHHHHHHHTTSEEEEEESE---------------
T ss_pred EEEECCCCHHHH------HHHHHHHhcCceEEEEeeec-cccccccccccccccccccccccccc---------------
Confidence 688999999955 45554444433344444433 22333455566677777666655433
Q ss_pred cccCCHHHHHHHHHHHHhcCCCCeEEEEe-CCCc
Q 023717 169 CRVDSPEDCARLIDVNMKLKLGSGLVIGV-PIPR 201 (278)
Q Consensus 169 ~r~d~~~e~A~~~~~~~~l~l~~g~lvan-PiP~ 201 (278)
+.+++++.++++.-..-.-+--+||.| .++.
T Consensus 61 --~~~~~~~~~~~~~~~~~~~~ld~li~~ag~~~ 92 (167)
T PF00106_consen 61 --LSDPESIRALIEEVIKRFGPLDILINNAGIFS 92 (167)
T ss_dssp --TTSHHHHHHHHHHHHHHHSSESEEEEECSCTT
T ss_pred --cccccccccccccccccccccccccccccccc
Confidence 556777777777666433344455555 4444
No 60
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=49.03 E-value=33 Score=34.55 Aligned_cols=59 Identities=31% Similarity=0.459 Sum_probs=42.6
Q ss_pred ecCCHHHHHHHHhcCCCccccc-----ccchHHHHhcCCCchhhHHHHH-----------HHHHHCCCcEE-Eecccc
Q 023717 36 VGLSTEELERLAKLGSKAQKTA-----RRDIAHVVATRGNGATTVSATM-----------FFASMVGIPVF-VTGGIG 96 (278)
Q Consensus 36 VGl~~~el~~la~~~~~~~K~s-----rRDl~~~~a~~~~GaTTVaaTm-----------~lA~~aGI~VF-aTGGIG 96 (278)
-|+|.+|++.+-...++..-+| .|||..+.+++ ++| .-|=-| ++|.+-|++.+ .|||||
T Consensus 255 ~~~s~~~i~~~LNkkSGllGlSg~ssD~R~l~~~~~~g-~~A-~lA~~~f~~Ri~kyIg~y~a~L~glDaiVFTaGIG 330 (396)
T COG0282 255 EGMSAEEIDTLLNKKSGLLGLSGLSSDMRDLEEAAAEG-NEA-KLALDMFVYRIAKYIGSYAAALGGLDALVFTAGIG 330 (396)
T ss_pred cCCCHHHHHHHHhhhccccccccccchHHHHHHHhccC-chH-HHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCccc
Confidence 5799999999876555666555 79999999999 653 223333 46778888854 499998
No 61
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=48.53 E-value=1.2e+02 Score=26.18 Aligned_cols=84 Identities=20% Similarity=0.205 Sum_probs=43.1
Q ss_pred cEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCcceeecCCCCcc
Q 023717 88 PVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKV 167 (278)
Q Consensus 88 ~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~~~ 167 (278)
-+++|||-||+-+ .+..=|.+.+- .||+....+--.....++.++.+|..+..+.
T Consensus 5 ~~lVtG~s~giG~------~~a~~l~~~G~---~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 59 (246)
T PRK12938 5 IAYVTGGMGGIGT------SICQRLHKDGF---KVVAGCGPNSPRRVKWLEDQKALGFDFIASE---------------- 59 (246)
T ss_pred EEEEECCCChHHH------HHHHHHHHcCC---EEEEEcCCChHHHHHHHHHHHhcCCcEEEEE----------------
Confidence 4799999999844 55555544443 2333211222233445566666554443322
Q ss_pred CcccCCHHHHHHHHHHH-HhcCCCCeEEEEeC
Q 023717 168 PCRVDSPEDCARLIDVN-MKLKLGSGLVIGVP 198 (278)
Q Consensus 168 ~~r~d~~~e~A~~~~~~-~~l~l~~g~lvanP 198 (278)
..+.+.+++.+.+..- ..++ +--+||.|.
T Consensus 60 -~D~~~~~~~~~~~~~~~~~~~-~id~li~~a 89 (246)
T PRK12938 60 -GNVGDWDSTKAAFDKVKAEVG-EIDVLVNNA 89 (246)
T ss_pred -cCCCCHHHHHHHHHHHHHHhC-CCCEEEECC
Confidence 3356677776666533 3333 223455554
No 62
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=48.52 E-value=30 Score=29.49 Aligned_cols=77 Identities=22% Similarity=0.247 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHCCCcccEEEEEcCceeecCCHHHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHHHHHHHHCCCc
Q 023717 9 TAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIP 88 (278)
Q Consensus 9 ~A~~~E~~vR~~GavPATIaii~G~i~VGl~~~el~~la~~~~~~~K~srRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~ 88 (278)
.+...=+.+|+.|.- |++ | .+|.+...++.|..-..+.+|+++.-+...... ......+.+-..+|+..||+
T Consensus 133 ~~~~~~~~l~~~G~~---l~l-d---~~g~~~~~~~~l~~~~~d~iKld~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~ 204 (240)
T cd01948 133 EALATLRRLRALGVR---IAL-D---DFGTGYSSLSYLKRLPVDYLKIDRSFVRDIETD-PEDRAIVRAIIALAHSLGLK 204 (240)
T ss_pred HHHHHHHHHHHCCCe---EEE-e---CCCCcHhhHHHHHhCCCCEEEECHHHHHhHhcC-hhhHHHHHHHHHHHHHCCCe
Confidence 344555567777764 554 2 257888888888776567889988776544433 45567788888999999999
Q ss_pred EEEec
Q 023717 89 VFVTG 93 (278)
Q Consensus 89 VFaTG 93 (278)
|.|+|
T Consensus 205 via~g 209 (240)
T cd01948 205 VVAEG 209 (240)
T ss_pred EEEEe
Confidence 99886
No 63
>PLN02522 ATP citrate (pro-S)-lyase
Probab=47.77 E-value=2.4e+02 Score=29.96 Aligned_cols=122 Identities=19% Similarity=0.149 Sum_probs=72.4
Q ss_pred CCchhhHHHHHHHHHHCCCcEEEecccccccCCCccccccccchhhhc---CCCeEEEecccccccchhhhHhHhhh--C
Q 023717 69 GNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELG---RTPVAVVSAGIKSILDIPRTLEYLET--H 143 (278)
Q Consensus 69 ~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~---rtpV~VVcaG~KsILDi~~TLE~LET--~ 143 (278)
+||+.|-+ .+..+...|+.+=--=|||| ..-...|...-|..|. +|.++|+. |--.+=|=.+-+|+++. .
T Consensus 175 qSGtL~~e-i~~~~~~~GlG~S~~VsiGn---d~~~g~~~~D~L~~~~~Dp~Tk~Ivly-gEiGg~~e~~f~ea~~~a~~ 249 (608)
T PLN02522 175 KSGGMSNE-MYNVIARVTDGIYEGIAIGG---DVFPGSTLSDHVLRFNNIPQIKMIVVL-GELGGRDEYSLVEALKQGKV 249 (608)
T ss_pred ccHHHHHH-HHHHHHHcCCCeEEEEEeCC---CCCCCCCHHHHHHHHhcCCCCCEEEEE-EecCchhHHHHHHHHHHhcC
Confidence 57777654 46677788887666667776 2222245555555565 45555554 22234455677788775 6
Q ss_pred CeeEEeecCCC----Ccc---eee-------------------cCCCCccCcccCCHHHHHHHHHHHHhcCCCCeEEEEe
Q 023717 144 GVCVAAYKTNE----FPA---FFT-------------------ETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGV 197 (278)
Q Consensus 144 GV~V~gy~t~~----fPa---Fy~-------------------~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvan 197 (278)
+-||+.|.... +|. |=. ++.|+ .+++|++|+.++++.-.+-=...|+++-.
T Consensus 250 ~KPVVa~kaGrsa~~~~~~aa~gHtGAiag~~~~ta~~k~aAlr~aGv---~vv~s~~El~~~~~~~~~~~~~~~~~~~~ 326 (608)
T PLN02522 250 SKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDAGA---IVPTSFEALEAAIKETFEKLVEEGKIIPV 326 (608)
T ss_pred CCCEEEEeccCCCccCccccccccccccccCCCccHHHHHHHHHHCCC---eEeCCHHHHHHHHHHHHHHHHhCCceeec
Confidence 89999997433 331 211 11222 26788889888887544333467777766
Q ss_pred C
Q 023717 198 P 198 (278)
Q Consensus 198 P 198 (278)
|
T Consensus 327 ~ 327 (608)
T PLN02522 327 K 327 (608)
T ss_pred C
Confidence 4
No 64
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=47.74 E-value=80 Score=32.32 Aligned_cols=81 Identities=16% Similarity=0.164 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHHHHCCCcccEEEEEcCceeecCCHHHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHHHHHHHH
Q 023717 5 QNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASM 84 (278)
Q Consensus 5 ~Nle~A~~~E~~vR~~GavPATIaii~G~i~VGl~~~el~~la~~~~~~~K~srRDl~~~~a~~~~GaTTVaaTm~lA~~ 84 (278)
+|.+.++..=+.+|+.|. .|+|=| +|.+..-++.|..-..+.+|+++.=+. -+......-..+.+...+|+.
T Consensus 675 ~~~~~~~~~l~~l~~~G~---~i~ld~----fg~~~~~~~~l~~l~~d~iKid~~~~~-~~~~~~~~~~~~~~~~~~~~~ 746 (799)
T PRK11359 675 EHDTEIFKRIQILRDMGV---GLSVDD----FGTGFSGLSRLVSLPVTEIKIDKSFVD-RCLTEKRILALLEAITSIGQS 746 (799)
T ss_pred cCHHHHHHHHHHHHHCCC---EEEEEC----CCCchhhHHHHhhCCCCEEEECHHHHh-hcccChhHHHHHHHHHHHHHH
Confidence 566777777888899987 566543 677778888887765678999965332 233344455678899999999
Q ss_pred CCCcEEEec
Q 023717 85 VGIPVFVTG 93 (278)
Q Consensus 85 aGI~VFaTG 93 (278)
.||+|.|+|
T Consensus 747 ~~i~via~g 755 (799)
T PRK11359 747 LNLTVVAEG 755 (799)
T ss_pred CCCeEEEEc
Confidence 999999984
No 65
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=47.64 E-value=1.3e+02 Score=27.47 Aligned_cols=75 Identities=29% Similarity=0.460 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHCCCcccEEEEEc-CceeecCCHHHHHHHHh----cCCCcccccccchHHHHhcCCCchhhHHHHHHHHH
Q 023717 9 TAKEVEAIVRNNGAVPATIAILE-GLPCVGLSTEELERLAK----LGSKAQKTARRDIAHVVATRGNGATTVSATMFFAS 83 (278)
Q Consensus 9 ~A~~~E~~vR~~GavPATIaii~-G~i~VGl~~~el~~la~----~~~~~~K~srRDl~~~~a~~~~GaTTVaaTm~lA~ 83 (278)
...++.++++..+.+|=.+ |+. |. |+++|+.+.++ .+-+..|.|.-= ..+|.|+..--.+.+
T Consensus 104 v~~ei~~i~~~~~g~~lKv-IlE~~~----L~~~ei~~a~~ia~eaGADfvKTsTGf--------~~~gat~~dv~~m~~ 170 (211)
T TIGR00126 104 VYDDIRAVVEACAGVLLKV-IIETGL----LTDEEIRKACEICIDAGADFVKTSTGF--------GAGGATVEDVRLMRN 170 (211)
T ss_pred HHHHHHHHHHHcCCCeEEE-EEecCC----CCHHHHHHHHHHHHHhCCCEEEeCCCC--------CCCCCCHHHHHHHHH
Confidence 3445555555554444444 442 21 56666654432 223455655310 125566654444444
Q ss_pred HC--CCcEEEecccc
Q 023717 84 MV--GIPVFVTGGIG 96 (278)
Q Consensus 84 ~a--GI~VFaTGGIG 96 (278)
.. .++|-+.|||-
T Consensus 171 ~v~~~v~IKaaGGir 185 (211)
T TIGR00126 171 TVGDTIGVKASGGVR 185 (211)
T ss_pred HhccCCeEEEeCCCC
Confidence 33 36666666553
No 66
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=47.55 E-value=1.7e+02 Score=29.56 Aligned_cols=45 Identities=24% Similarity=0.240 Sum_probs=24.5
Q ss_pred HHHHHHHCCCcEEE----ecccccccCCCccccccccchhhhcCC-----CeEEE
Q 023717 78 TMFFASMVGIPVFV----TGGIGGVHRHGEHTMDISSDLTELGRT-----PVAVV 123 (278)
Q Consensus 78 Tm~lA~~aGI~VFa----TGGIGGVHrg~~~t~DiSaDL~eL~rt-----pV~VV 123 (278)
--.+|+..||-+.+ ||=-+| ..|+.+.++|..|+..|++. |+..|
T Consensus 272 lr~lc~~~g~lLI~DEV~tGfR~g-~~ga~~~~gv~PDi~t~gK~lggG~Pigav 325 (474)
T PLN02482 272 LREITKENGALLVFDEVMTGFRIA-YGGAQEYFGITPDLTTLGKVIGGGLPVGAY 325 (474)
T ss_pred HHHHHHHcCCEEEEeccccCeecC-cchHhHHhCCCCCEEEecchhhCCCceEEE
Confidence 34567777764432 432122 23444556777777776554 66665
No 67
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=47.50 E-value=2.6e+02 Score=26.66 Aligned_cols=161 Identities=14% Similarity=0.118 Sum_probs=89.1
Q ss_pred HHHHHHHHC---------CCcEEEeccccccc-CCCc----ccccc----ccchhhhcCCCeEEEe-cccccccchhhhH
Q 023717 77 ATMFFASMV---------GIPVFVTGGIGGVH-RHGE----HTMDI----SSDLTELGRTPVAVVS-AGIKSILDIPRTL 137 (278)
Q Consensus 77 aTm~lA~~a---------GI~VFaTGGIGGVH-rg~~----~t~Di----SaDL~eL~rtpV~VVc-aG~KsILDi~~TL 137 (278)
.+..++..+ |-+...|.|-|=-. .|.. -+||. -..+..-..+||+|=. +| -+.+++.+|+
T Consensus 20 ~SA~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~~~Pv~~D~d~G-g~~~~v~r~V 98 (285)
T TIGR02320 20 LSALIAEEARVEVGGESLGFDGIWSSSLTDSTSRGVPDIEEASWTQRLDVVEFMFDVTTKPIILDGDTG-GNFEHFRRLV 98 (285)
T ss_pred HHHHHHHHhhhcccCcCCCcCEEEechHHHHHHCCCCCcCcCCHHHHHHHHHHHHhhcCCCEEEecCCC-CCHHHHHHHH
Confidence 456677777 88888887755211 2311 11111 1112223356776644 56 7999999999
Q ss_pred hHhhhCCeeEEeecCCCCcceeecCCCCccCcccCCHHHHHHHHHHHHhcCCCCe-EEEEeCCCccCCCChHHHHHHHHH
Q 023717 138 EYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSG-LVIGVPIPREHAASGRVIESAIQS 216 (278)
Q Consensus 138 E~LET~GV~V~gy~t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g-~lvanPiP~e~~~~~~~i~~~i~~ 216 (278)
+.|+..||-=+-.....+|.-- ...|.+.++.+-+.+|.++.|++-.+..-... +|++.= +..+....++++|++
T Consensus 99 ~~l~~aGvaGi~iEDq~~pk~c-g~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiART---Da~~~~~~~~eAi~R 174 (285)
T TIGR02320 99 RKLERRGVSAVCIEDKLGLKKN-SLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARV---ESLILGKGMEDALKR 174 (285)
T ss_pred HHHHHcCCeEEEEeccCCCccc-cccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEec---ccccccCCHHHHHHH
Confidence 9999999866555444455421 11233444567788898888887665422333 444541 111111236888888
Q ss_pred HHHHHHHcCCC-----CccCChHHHHHHHHHh
Q 023717 217 ALREAREKNIT-----GNAETPFLLARVNELT 243 (278)
Q Consensus 217 Al~ea~~~gi~-----Gk~vTPflL~~i~elT 243 (278)
|.+.++ .|-. +...+|--+.++.+..
T Consensus 175 a~ay~e-AGAD~ifv~~~~~~~~ei~~~~~~~ 205 (285)
T TIGR02320 175 AEAYAE-AGADGIMIHSRKKDPDEILEFARRF 205 (285)
T ss_pred HHHHHH-cCCCEEEecCCCCCHHHHHHHHHHh
Confidence 765544 5443 3233444455555444
No 68
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=46.84 E-value=1.9e+02 Score=27.68 Aligned_cols=135 Identities=18% Similarity=0.217 Sum_probs=85.0
Q ss_pred HHHHHHHHCCCcEEEeccccccc-CCCccccccc-cch----------hhhcCCCeEEEe-cccccccchhhhHhHhhhC
Q 023717 77 ATMFFASMVGIPVFVTGGIGGVH-RHGEHTMDIS-SDL----------TELGRTPVAVVS-AGIKSILDIPRTLEYLETH 143 (278)
Q Consensus 77 aTm~lA~~aGI~VFaTGGIGGVH-rg~~~t~DiS-aDL----------~eL~rtpV~VVc-aG~KsILDi~~TLE~LET~ 143 (278)
.+..++..+|.+...|+|-|=-+ .|. -|.. -++ ..-...||+|=+ +|-=..+++-+|.+.++..
T Consensus 24 ~SAri~e~aGf~Ai~~sg~~~a~~lG~---pD~g~lt~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~~tv~~~~~a 100 (285)
T TIGR02317 24 MAALLAERAGFEAIYLSGAAVAASLGL---PDLGITTLDEVAEDARRITRVTDLPLLVDADTGFGEAFNVARTVREMEDA 100 (285)
T ss_pred HHHHHHHHcCCCEEEEcHHHHHHhCCC---CCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHc
Confidence 44568888999999998866332 342 2321 122 223456877744 6656699999999999999
Q ss_pred CeeEEeecCCCCcceeecCCCCccCcccCCHHHHHHHHHHHHhcCC-CCeEEEEeCCCccCCCChHHHHHHHHHHHHHHH
Q 023717 144 GVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKL-GSGLVIGVPIPREHAASGRVIESAIQSALREAR 222 (278)
Q Consensus 144 GV~V~gy~t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l-~~g~lvanPiP~e~~~~~~~i~~~i~~Al~ea~ 222 (278)
||-=+-.....+|- +-|+.-...+-+.+|.++-|++-.+..- +.-+|++.= ++.....++++|+++.+.++
T Consensus 101 G~agi~IEDq~~pK----~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiART----Da~~~~g~deAI~Ra~ay~~ 172 (285)
T TIGR02317 101 GAAAVHIEDQVLPK----RCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIART----DARAVEGLDAAIERAKAYVE 172 (285)
T ss_pred CCeEEEEecCCCcc----ccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEc----CcccccCHHHHHHHHHHHHH
Confidence 99777776666662 2233333456677777777775555432 334555552 22223347889998877665
No 69
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=46.39 E-value=46 Score=32.59 Aligned_cols=69 Identities=16% Similarity=0.156 Sum_probs=37.5
Q ss_pred chhhHHHHHHHHHHCCCcEEEecccccccCCCccccccccchh-------------hh-cCCCeEEEecccccccchhhh
Q 023717 71 GATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLT-------------EL-GRTPVAVVSAGIKSILDIPRT 136 (278)
Q Consensus 71 GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~-------------eL-~rtpV~VVcaG~KsILDi~~T 136 (278)
||.=.|+-..+.+..|..|+.+=.- ...+...+|. .+ ....++|+|.|++. |-| -
T Consensus 8 gG~gm~~la~~l~~~G~~V~~~D~~--------~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~SpgI~~--~~~-~ 76 (448)
T TIGR01081 8 CGTFMGGLAMIAKQLGHEVTGSDAN--------VYPPMSTQLEAQGIEIIEGFDAAQLEPKPDLVVIGNAMKR--GNP-C 76 (448)
T ss_pred CHHhHHHHHHHHHhCCCEEEEECCC--------CCcHHHHHHHHCCCEEeCCCCHHHCCCCCCEEEECCCCCC--CCH-H
Confidence 5666777777777888887665420 0011111121 11 23668999999973 433 2
Q ss_pred HhHhhhCCeeEEee
Q 023717 137 LEYLETHGVCVAAY 150 (278)
Q Consensus 137 LE~LET~GV~V~gy 150 (278)
+.....+|+||+++
T Consensus 77 ~~~a~~~~i~v~~~ 90 (448)
T TIGR01081 77 VEAVLNLNLPYTSG 90 (448)
T ss_pred HHHHHHCCCCEEeH
Confidence 34444555555543
No 70
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=46.32 E-value=27 Score=36.51 Aligned_cols=58 Identities=28% Similarity=0.464 Sum_probs=42.6
Q ss_pred cEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchh--hhHhHhhhCCeeEEeecCCC
Q 023717 88 PVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIP--RTLEYLETHGVCVAAYKTNE 154 (278)
Q Consensus 88 ~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~--~TLE~LET~GV~V~gy~t~~ 154 (278)
+|+..+ |.|...+ -|.++.+--+-.++|+|+|-+.=-.-| .|+|.|+.+|++| |+||+
T Consensus 601 dvLk~~-----HHGS~~S--ss~~fl~~v~P~~aiiS~g~~N~yghP~~~vl~rl~~~g~~~--~~T~~ 660 (662)
T TIGR00361 601 DVLQVG-----HHGSKTS--TSEELIQQVQPKVAIISAGRNNRWHHPHQKVLQRLQRHSIRV--LRTDQ 660 (662)
T ss_pred cEEEeC-----CCCCCCC--ChHHHHHhcCCCEEEEECCCCCCCCCChHHHHHHHHHCCCeE--EecCC
Confidence 355554 6665443 356777777888999999987666555 5999999999997 55553
No 71
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=46.21 E-value=43 Score=31.54 Aligned_cols=111 Identities=14% Similarity=0.129 Sum_probs=65.3
Q ss_pred chhhh-cCCCeEEE------eccc-ccccchhhhHhHhhhCCeeEEeecCCCCc---ceeecC-------CCCccCcccC
Q 023717 111 DLTEL-GRTPVAVV------SAGI-KSILDIPRTLEYLETHGVCVAAYKTNEFP---AFFTET-------SGSKVPCRVD 172 (278)
Q Consensus 111 DL~eL-~rtpV~VV------caG~-KsILDi~~TLE~LET~GV~V~gy~t~~fP---aFy~~~-------Sg~~~~~r~d 172 (278)
+|.++ ..-+|+++ |-++ ..|.++..-.+-++.+|+-|+|...|. | ..|... .+++.|.-.|
T Consensus 91 sLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds-~~~h~aw~~~~~~~~g~~~l~fPlLsD 169 (261)
T PTZ00137 91 NSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDS-PFSHKAWKELDVRQGGVSPLKFPLFSD 169 (261)
T ss_pred eHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC-HHHHHHHHhhhhhhccccCcceEEEEc
Confidence 45565 44466666 2333 346677777788889999999999776 3 123221 3555665556
Q ss_pred CHHHHHHHHHHHHhcC--CCCeEEE----------EeCCCccCCCChHHHHHHHHHHHHHHHHcC
Q 023717 173 SPEDCARLIDVNMKLK--LGSGLVI----------GVPIPREHAASGRVIESAIQSALREAREKN 225 (278)
Q Consensus 173 ~~~e~A~~~~~~~~l~--l~~g~lv----------anPiP~e~~~~~~~i~~~i~~Al~ea~~~g 225 (278)
.-.++|+.+-.....| +++..|| .+|.|... +-+++-++|+ |++..++.|
T Consensus 170 ~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr--~v~eiLr~l~-alq~~~~~g 231 (261)
T PTZ00137 170 ISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGR--SVDETLRLFD-AVQFAEKTG 231 (261)
T ss_pred CChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCC--CHHHHHHHHH-HhchhhhcC
Confidence 5456666544322122 3444444 25666653 5556666665 788877775
No 72
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=46.12 E-value=43 Score=34.52 Aligned_cols=145 Identities=23% Similarity=0.303 Sum_probs=84.8
Q ss_pred cCCHHHHHHHHhc-CCCccccccc--chHHHHhcCCCchhh---HHHHHHHHHHCCCcEEEecccccccCCCcccccccc
Q 023717 37 GLSTEELERLAKL-GSKAQKTARR--DIAHVVATRGNGATT---VSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISS 110 (278)
Q Consensus 37 Gl~~~el~~la~~-~~~~~K~srR--Dl~~~~a~~~~GaTT---VaaTm~lA~~aGI~VFaTGGIGGVHrg~~~t~DiSa 110 (278)
|.|.+||.-+++. .+...+++.- ++-..+..+.+|.-| -..+.+++..+|+||+--|+=+--++.+ |+
T Consensus 246 get~eEl~g~~~a~~~~~~~~~~~~~~~iD~~gtGgdg~~t~nist~aa~v~A~~Gv~V~kHG~r~~ss~~G------sa 319 (531)
T PRK09522 246 GEHPNEIAGAATALLENAAPFPRPDYLFADIVGTGGDGSNSINISTASAFVAAACGLKVAKHGNRSVSSKSG------SS 319 (531)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhCCCcEEEeCCCCCCCCcc------HH
Confidence 5789999888652 1122334321 123344666666642 2234677788999999999755444432 46
Q ss_pred chhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCccee-----ecCCCCccCc----------------
Q 023717 111 DLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFF-----TETSGSKVPC---------------- 169 (278)
Q Consensus 111 DL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy-----~~~Sg~~~~~---------------- 169 (278)
|+-| .-|.+-=++.....+.|+..|+.-+ |....+|++- -+.=|++.++
T Consensus 320 dvle---------alGi~~~~~~~~~~~~l~~~g~~fl-~ap~~hpam~~~~~~R~~Lg~rT~fN~lgpL~NPa~~~~~v 389 (531)
T PRK09522 320 DLLA---------AFGINLDMNADKSRQALDELGVCFL-FAPKYHTGFRHAMPVRQQLKTRTLFNVLGPLINPAHPPLAL 389 (531)
T ss_pred HHHH---------HcCCCCCCCHHHHHHHHHHhCcEEE-EhhHhCHHHHHHHHHHHHhCCCcHHHHHHHhcCCCCCCcEE
Confidence 7555 3366666777788888999888776 5555555441 1111222222
Q ss_pred -ccCCHHHHHHHHHHHHhcCCCCeEEEEe
Q 023717 170 -RVDSPEDCARLIDVNMKLKLGSGLVIGV 197 (278)
Q Consensus 170 -r~d~~~e~A~~~~~~~~l~l~~g~lvan 197 (278)
-+-+++-...+.++-.+||.+..++|--
T Consensus 390 ~Gv~~~~~~~~~a~~l~~lG~~~~~vv~G 418 (531)
T PRK09522 390 IGVYSPELVLPIAETLRVLGYQRAAVVHS 418 (531)
T ss_pred EEeeCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 1335555555556666778777777663
No 73
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=46.10 E-value=1.6e+02 Score=26.55 Aligned_cols=72 Identities=18% Similarity=0.192 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHCCCcEEEeccccccc-----CCCcccc-----ccccchhhhcC---CCeEEEecccccccchhhhHhH
Q 023717 73 TTVSATMFFASMVGIPVFVTGGIGGVH-----RHGEHTM-----DISSDLTELGR---TPVAVVSAGIKSILDIPRTLEY 139 (278)
Q Consensus 73 TTVaaTm~lA~~aGI~VFaTGGIGGVH-----rg~~~t~-----DiSaDL~eL~r---tpV~VVcaG~KsILDi~~TLE~ 139 (278)
..-..+..+|+..|++||++-.-..-. -|....+ +....+.++.. ..+++=|+|.+. +...+..
T Consensus 152 ~ig~~~~~lak~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~~~~~---~~~~~~~ 228 (327)
T PRK10754 152 GVGLIACQWAKALGAKLIGTVGSAQKAQRAKKAGAWQVINYREENIVERVKEITGGKKVRVVYDSVGKDT---WEASLDC 228 (327)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEEcCCCCcHHHHHHHHcCCCCeEEEEECCcHHH---HHHHHHH
Confidence 344467889999999999875421000 0111122 22233444422 356677777654 3456777
Q ss_pred hhhCCeeE
Q 023717 140 LETHGVCV 147 (278)
Q Consensus 140 LET~GV~V 147 (278)
|...|.-|
T Consensus 229 l~~~g~~v 236 (327)
T PRK10754 229 LQRRGLMV 236 (327)
T ss_pred hccCCEEE
Confidence 87777555
No 74
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=45.85 E-value=22 Score=36.28 Aligned_cols=71 Identities=15% Similarity=0.191 Sum_probs=51.5
Q ss_pred CCcEEEecccccccCCCccccc--cccchhhhcCCCeEEEeccc----ccc-cchhhhHhHhhhCCeeEEeecCCCCc
Q 023717 86 GIPVFVTGGIGGVHRHGEHTMD--ISSDLTELGRTPVAVVSAGI----KSI-LDIPRTLEYLETHGVCVAAYKTNEFP 156 (278)
Q Consensus 86 GI~VFaTGGIGGVHrg~~~t~D--iSaDL~eL~rtpV~VVcaG~----KsI-LDi~~TLE~LET~GV~V~gy~t~~fP 156 (278)
+=++.+-=|.||.+-|--..-| -++||..+-..||++|.-.- -+. +-+-.+.+||+..++++.|+==+.++
T Consensus 317 ~~DivIIEGagGL~dg~~~~~~~~S~adlAk~l~~PVILV~~~~~g~i~~~~~~i~G~~~~l~~~~i~i~GVIlN~v~ 394 (476)
T PRK06278 317 DYDYYIIEGVMGAFTGALNKKNPYSGAEIAKALGFPVYIVSSCSKSGIEGAFVESMAYYSLLKKMGVKVEGIILNKVY 394 (476)
T ss_pred CCCEEEEECCCCcccccCCCCccccHHHHHHHhCCCEEEEEcCCCChHHHHHHHHHHHHHHHhcCCCcEEEEEEECCC
Confidence 5678888899999998422212 45799999999999987542 223 33455789999999999998655554
No 75
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=45.38 E-value=1.5e+02 Score=25.45 Aligned_cols=99 Identities=20% Similarity=0.270 Sum_probs=50.6
Q ss_pred cEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCcceeecCCCCcc
Q 023717 88 PVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKV 167 (278)
Q Consensus 88 ~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~~~ 167 (278)
.+++|||-||+.+ .+..-|.+.+- .|++++-... .....+..|+..|..+..+
T Consensus 2 ~~lItG~sg~iG~------~la~~l~~~G~-~v~~~~r~~~---~~~~~~~~l~~~~~~~~~~----------------- 54 (254)
T TIGR02415 2 VALVTGGAQGIGK------GIAERLAKDGF-AVAVADLNEE---TAKETAKEINQAGGKAVAY----------------- 54 (254)
T ss_pred EEEEeCCCchHHH------HHHHHHHHCCC-EEEEEeCCHH---HHHHHHHHHHhcCCeEEEE-----------------
Confidence 3789999999844 56666666553 4555543221 1222334445444322111
Q ss_pred CcccCCHHHHHHHHHHHH-hcCCCCeEEEEeC-CCcc---CCCChHHHHHHH
Q 023717 168 PCRVDSPEDCARLIDVNM-KLKLGSGLVIGVP-IPRE---HAASGRVIESAI 214 (278)
Q Consensus 168 ~~r~d~~~e~A~~~~~~~-~l~l~~g~lvanP-iP~e---~~~~~~~i~~~i 214 (278)
+..+.+++++.+++..-. .++ +-.+||-|. +... ...+.+.+++..
T Consensus 55 ~~Dl~~~~~i~~~~~~~~~~~~-~id~vi~~ag~~~~~~~~~~~~~~~~~~~ 105 (254)
T TIGR02415 55 KLDVSDKDQVFSAIDQAAEKFG-GFDVMVNNAGVAPITPILEITEEELKKVY 105 (254)
T ss_pred EcCCCCHHHHHHHHHHHHHHcC-CCCEEEECCCcCCCCCcccCCHHHHHHHH
Confidence 234567888888776443 344 333454443 2211 134555555444
No 76
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=45.36 E-value=1.3e+02 Score=29.29 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=8.6
Q ss_pred HHHHHHHHHCCCcEEEec
Q 023717 76 SATMFFASMVGIPVFVTG 93 (278)
Q Consensus 76 aaTm~lA~~aGI~VFaTG 93 (278)
.....+|...+|.++.+|
T Consensus 64 ~~l~~~a~~~~id~I~p~ 81 (451)
T PRK08591 64 PAIISAAEITGADAIHPG 81 (451)
T ss_pred HHHHHHHHHhCCCEEEEC
Confidence 344445555555554443
No 77
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=45.36 E-value=1.5e+02 Score=29.61 Aligned_cols=203 Identities=16% Similarity=0.172 Sum_probs=108.3
Q ss_pred HHHHHHHHHCCCcccEEEEEcCceeecCCHHHHHHHHhcCCCcccccccchHHHHhcCCCc----hhhHHHHHHHHHHCC
Q 023717 11 KEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNG----ATTVSATMFFASMVG 86 (278)
Q Consensus 11 ~~~E~~vR~~GavPATIaii~G~i~VGl~~~el~~la~~~~~~~K~srRDl~~~~a~~~~G----aTTVaaTm~lA~~aG 86 (278)
.++=+.+++.| +|-.|.+-+|... .+++.+++|++.+-+..-+|-.-+...+.+++.| .-....--.+++ +
T Consensus 92 ~eLl~~lk~~g-i~taI~~TnG~~l--~~~e~~~~L~~~gld~v~iSvka~dpe~h~kl~G~~~a~~ILe~L~~L~e--~ 166 (404)
T TIGR03278 92 EELTKGLSDLG-LPIHLGYTSGKGF--DDPEIAEFLIDNGVREVSFTVFATDPELRREWMKDPTPEASLQCLRRFCE--S 166 (404)
T ss_pred HHHHHHHHhCC-CCEEEeCCCCccc--CCHHHHHHHHHcCCCEEEEecccCCHHHHHHHhCCCCHHHHHHHHHHHHh--c
Confidence 34444566676 5644444577622 4788899998753345555544444444444333 233333333332 1
Q ss_pred CcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeec---CCCCcceeecCC
Q 023717 87 IPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYK---TNEFPAFFTETS 163 (278)
Q Consensus 87 I~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~---t~~fPaFy~~~S 163 (278)
|++ .-.+|+|.|.-+=-++.+|+++|...|+.-++.. .-.-..| .-+-
T Consensus 167 ~~v----------------------------~~~ivlIPGiND~eel~~ti~~L~~lg~~~V~L~~y~~~g~~ky-~lg~ 217 (404)
T TIGR03278 167 CEV----------------------------HAASVIIPGVNDGDVLWKTCADLESWGAKALILMRFANTEEQGL-ILGN 217 (404)
T ss_pred CCE----------------------------EEEEEEeCCccCcHHHHHHHHHHHHCCCCEEEEEeccccccccc-ccCC
Confidence 221 1247889998874455799999999998644432 1000111 1122
Q ss_pred CCccC-cccCCHHHHHHHHH-HHHhcCCC---CeEEEEe---CCCccCCCChHHHHHHHHHHHHHHH-----HcCCCCcc
Q 023717 164 GSKVP-CRVDSPEDCARLID-VNMKLKLG---SGLVIGV---PIPREHAASGRVIESAIQSALREAR-----EKNITGNA 230 (278)
Q Consensus 164 g~~~~-~r~d~~~e~A~~~~-~~~~l~l~---~g~lvan---PiP~e~~~~~~~i~~~i~~Al~ea~-----~~gi~Gk~ 230 (278)
.+..+ ++-.+.++..++++ .+.+++++ +.++..- |+ .+.+-.+++++... -.=++|+-
T Consensus 218 ~~~~~~~~~~~~~e~~~~v~~~~~~~~i~~~g~~~~~~~ag~~~---------~~~~e~~~~~~~l~~~~~~~~ivtG~~ 288 (404)
T TIGR03278 218 APIIPGIKPHTVSEFKNIVRETHKEFPIRVTGTPLCDPETGAPF---------ALAKEPNEYLEILPPVEKEATIITGRV 288 (404)
T ss_pred cCcccCCCCCCHHHHHHHHHHHHHHhCCcccCCcccccCCCCCe---------eHHHHHHHHHhhCCCCCceEEEEEEEe
Confidence 22333 55667778777743 34455522 2233333 22 22222223333211 11246899
Q ss_pred CChHHHHHHHHHhCCccHHHHHHHHHHH
Q 023717 231 ETPFLLARVNELTGGLSLASNIALVKNN 258 (278)
Q Consensus 231 vTPflL~~i~elT~G~Sl~aNiaLl~nN 258 (278)
.-||+-.-+.++.+- ++.|+--|+|+
T Consensus 289 a~~~~~~~~~~l~~~--~~v~v~~v~n~ 314 (404)
T TIGR03278 289 AAPFIREIFRALGGG--DLVNVVPVKKD 314 (404)
T ss_pred cHHHHHHHHHHHhcC--ceEEEEEecCc
Confidence 999998777777544 66777777888
No 78
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=45.27 E-value=22 Score=32.47 Aligned_cols=65 Identities=25% Similarity=0.345 Sum_probs=36.0
Q ss_pred HHHHHHHHHHCCCcEEEecccccccCCCccccccccchhhhcCCCeEEEeccc-ccccchhhhHhHhhhCCeeE
Q 023717 75 VSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGI-KSILDIPRTLEYLETHGVCV 147 (278)
Q Consensus 75 VaaTm~lA~~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~-KsILDi~~TLE~LET~GV~V 147 (278)
..-.-.+++...|||++.||+... |-=.++.+++...-+++++=- .-=+++..-+++|+.+|+||
T Consensus 188 ~~~~~~i~~~~~ipvia~GGi~s~--------~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 188 LELTKAVSEAVKIPVIASGGAGKP--------EHFYEAFTKGKADAALAASVFHYREITIGEVKEYLAERGIPV 253 (254)
T ss_pred HHHHHHHHHhCCCCEEEeCCCCCH--------HHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHHHCCCcc
Confidence 444455667778899988888732 111123333323333332210 01256777788888888876
No 79
>PRK14030 glutamate dehydrogenase; Provisional
Probab=45.11 E-value=84 Score=32.03 Aligned_cols=135 Identities=16% Similarity=0.128 Sum_probs=87.7
Q ss_pred HHHHHHHHCCCcccEEEEEcCceee--cCCHHHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHHHHHHHHCCCcE
Q 023717 12 EVEAIVRNNGAVPATIAILEGLPCV--GLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPV 89 (278)
Q Consensus 12 ~~E~~vR~~GavPATIaii~G~i~V--Gl~~~el~~la~~~~~~~K~srRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~V 89 (278)
.+-+...+.||..-+|.=.+|-|.= ||+.+++..|.+. |-+.+.+......+..|++.++.--++. ...+|
T Consensus 242 ~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~-----k~~~~~~~~~~~~~~~ga~~i~~~~~~~--~~cDV 314 (445)
T PRK14030 242 GAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLEL-----RASGNDIVAPYAEKFPGSTFFAGKKPWE--QKVDI 314 (445)
T ss_pred HHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHH-----HHhcCccHHHHHhcCCCCEEcCCcccee--ccccE
Confidence 3334445678886555444565554 8888887666442 2223333222233445666665433332 46779
Q ss_pred EEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCcceeecCCCCccCc
Q 023717 90 FVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPC 169 (278)
Q Consensus 90 FaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~~~~~ 169 (278)
|+=+.++++=.. .+...|.+...-+|+=|+.- +--|..-+.|+..||.|+ |.|+...-|+-+.|
T Consensus 315 liPcAl~n~I~~--------~na~~l~~~~ak~V~EgAN~-p~t~eA~~iL~~rGI~~v-------PD~~aNAGGVivs~ 378 (445)
T PRK14030 315 ALPCATQNELNG--------EDADKLIKNGVLCVAEVSNM-GCTAEAIDKFIAAKQLFA-------PGKAVNAGGVATSG 378 (445)
T ss_pred EeeccccccCCH--------HHHHHHHHcCCeEEEeCCCC-CCCHHHHHHHHHCCCEEe-------CcceecCCCeeeeh
Confidence 999999976331 23344655567778888866 777788899999999998 99999999998866
No 80
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=44.90 E-value=2.1e+02 Score=29.13 Aligned_cols=167 Identities=18% Similarity=0.171 Sum_probs=87.9
Q ss_pred CHHHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHHHHHHHHC--CCcEEEecccccccCCCccccccccchhhhc
Q 023717 39 STEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMV--GIPVFVTGGIGGVHRHGEHTMDISSDLTELG 116 (278)
Q Consensus 39 ~~~el~~la~~~~~~~K~srRDl~~~~a~~~~GaTTVaaTm~lA~~a--GI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~ 116 (278)
+++|+++-.+.+..++-+.-|||.- =-+-...|..|+.+. ++-+.+-+||-. ..|+..|.
T Consensus 168 ~~~El~~al~~~a~iiGiNnRdL~t-------~~vd~~~~~~l~~~ip~~~~~vseSGI~t-----------~~d~~~~~ 229 (454)
T PRK09427 168 NEEELERAIALGAKVIGINNRNLRD-------LSIDLNRTRELAPLIPADVIVISESGIYT-----------HAQVRELS 229 (454)
T ss_pred CHHHHHHHHhCCCCEEEEeCCCCcc-------ceECHHHHHHHHhhCCCCcEEEEeCCCCC-----------HHHHHHHH
Confidence 4566665544444566677777642 234466777777766 444445455542 23444442
Q ss_pred C-CCeEEEecccccccchhhhHhHhhhCCeeEEeecC-----------CCCccee-ecCCCCccCcccCCHHHHHHHHHH
Q 023717 117 R-TPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKT-----------NEFPAFF-TETSGSKVPCRVDSPEDCARLIDV 183 (278)
Q Consensus 117 r-tpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t-----------~~fPaFy-~~~Sg~~~~~r~d~~~e~A~~~~~ 183 (278)
. ..-++|-...-.=-|+..++.-|-+--|.++|..+ -+|-+|- ..+|.-.+ +++++.++...
T Consensus 230 ~~~davLiG~~lm~~~d~~~~~~~L~~~~vKICGit~~eda~~a~~~GaD~lGfIf~~~SpR~V-----~~~~a~~i~~~ 304 (454)
T PRK09427 230 PFANGFLIGSSLMAEDDLELAVRKLILGENKVCGLTRPQDAKAAYDAGAVYGGLIFVEKSPRYV-----SLEQAQEIIAA 304 (454)
T ss_pred hcCCEEEECHHHcCCCCHHHHHHHHhccccccCCCCCHHHHHHHHhCCCCEEeeEeCCCCCCCC-----CHHHHHHHHHh
Confidence 2 23344444443344777777777665677777764 2677774 35564333 57777777664
Q ss_pred HHhcCCCCeEEEEeCCCccCCCChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHHH
Q 023717 184 NMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNE 241 (278)
Q Consensus 184 ~~~l~l~~g~lvanPiP~e~~~~~~~i~~~i~~Al~ea~~~gi~Gk~vTPflL~~i~e 241 (278)
+....--||.|+ +.++|.+++++.-- .--.++|.+ +|-.++++.+
T Consensus 305 ---l~v~~VgVfv~~-------~~~~i~~i~~~~~l--D~vQLHG~e-~~~~~~~l~~ 349 (454)
T PRK09427 305 ---APLRYVGVFRNA-------DIEDIVDIAKQLSL--AAVQLHGDE-DQAYIDALRE 349 (454)
T ss_pred ---CCCCEEEEEeCC-------CHHHHHHHHHHcCC--CEEEeCCCC-CHHHHHHHHh
Confidence 233333345555 33344444332211 011235654 4555566654
No 81
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=44.51 E-value=60 Score=31.72 Aligned_cols=151 Identities=18% Similarity=0.179 Sum_probs=82.1
Q ss_pred CCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCC-eeEEeecCCCCcceeecCCC
Q 023717 86 GIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHG-VCVAAYKTNEFPAFFTETSG 164 (278)
Q Consensus 86 GI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~G-V~V~gy~t~~fPaFy~~~Sg 164 (278)
-..|+++||--|...=.+.=.+...+|.+ .+-|+...-|.- +.+..+.+...| +.|..| +++++..|....-
T Consensus 183 ~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~----~~~v~~~~G~~~--~~~~~~~~~~~~~~~v~~f-~~dm~~~~~~ADL 255 (357)
T COG0707 183 KKTILVTGGSQGAKALNDLVPEALAKLAN----RIQVIHQTGKND--LEELKSAYNELGVVRVLPF-IDDMAALLAAADL 255 (357)
T ss_pred CcEEEEECCcchhHHHHHHHHHHHHHhhh----CeEEEEEcCcch--HHHHHHHHhhcCcEEEeeH-HhhHHHHHHhccE
Confidence 56789999999887654444455666665 555554444443 677777888788 555555 4558888866554
Q ss_pred CccCcccCCHHHHHHHHHHHHhcCCCCeEEEEeCCCccCCCChHHHHHHHHHHHHHHHHc-CCCCccCChHHH-HHHHHH
Q 023717 165 SKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREK-NITGNAETPFLL-ARVNEL 242 (278)
Q Consensus 165 ~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~~~i~~~i~~Al~ea~~~-gi~Gk~vTPflL-~~i~el 242 (278)
+=.=-=-.+..|++. +|+| .|..|.|..- +.++. .=.+.+.++... -++-.++||=.| +.|.++
T Consensus 256 vIsRaGa~Ti~E~~a-------~g~P---~IliP~p~~~--~~~Q~--~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~~l 321 (357)
T COG0707 256 VISRAGALTIAELLA-------LGVP---AILVPYPPGA--DGHQE--YNAKFLEKAGAALVIRQSELTPEKLAELILRL 321 (357)
T ss_pred EEeCCcccHHHHHHH-------hCCC---EEEeCCCCCc--cchHH--HHHHHHHhCCCEEEeccccCCHHHHHHHHHHH
Confidence 333222335555554 3555 4555666542 33221 112233333222 235677777544 334443
Q ss_pred hCCccHHHHHHHHHHHHH
Q 023717 243 TGGLSLASNIALVKNNAL 260 (278)
Q Consensus 243 T~G~Sl~aNiaLl~nNa~ 260 (278)
-.- ..++.-..+|++
T Consensus 322 ~~~---~~~l~~m~~~a~ 336 (357)
T COG0707 322 LSN---PEKLKAMAENAK 336 (357)
T ss_pred hcC---HHHHHHHHHHHH
Confidence 332 455666666654
No 82
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=43.81 E-value=25 Score=25.50 Aligned_cols=32 Identities=28% Similarity=0.508 Sum_probs=23.5
Q ss_pred HHHHHHCC--CcccEEEEEcCc-eeecCCHHHHHHHH
Q 023717 14 EAIVRNNG--AVPATIAILEGL-PCVGLSTEELERLA 47 (278)
Q Consensus 14 E~~vR~~G--avPATIaii~G~-i~VGl~~~el~~la 47 (278)
.+..++.| .||.+ ++||. ...|.++++|++||
T Consensus 38 ~~~~~~~g~~~vP~v--~~~g~~~~~G~~~~~~~~~~ 72 (72)
T TIGR02194 38 IDYVKAQGFRQVPVI--VADGDLSWSGFRPDKLKALA 72 (72)
T ss_pred HHHHHHcCCcccCEE--EECCCcEEeccCHHHHHhcC
Confidence 33444456 57765 67776 99999999998875
No 83
>PRK11059 regulatory protein CsrD; Provisional
Probab=43.27 E-value=84 Score=32.24 Aligned_cols=80 Identities=18% Similarity=0.200 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHHCCCcccEEEEEcCceeecCCHHHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHHHHHHHHC
Q 023717 6 NFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMV 85 (278)
Q Consensus 6 Nle~A~~~E~~vR~~GavPATIaii~G~i~VGl~~~el~~la~~~~~~~K~srRDl~~~~a~~~~GaTTVaaTm~lA~~a 85 (278)
+.+.+..+=+..|+.|. .|+|= ..|.....+++|.+-.-+.+|+++.-+... ......-.-|.+..-+||..
T Consensus 531 ~~~~~~~~l~~L~~~G~---~iaid----dfG~g~~s~~~L~~l~~d~iKid~s~v~~i-~~~~~~~~~v~sli~~a~~~ 602 (640)
T PRK11059 531 HISRLRPVLRMLRGLGC---RLAVD----QAGLTVVSTSYIKELNVELIKLHPSLVRNI-HKRTENQLFVRSLVGACAGT 602 (640)
T ss_pred CHHHHHHHHHHHHHCCC---EEEEE----CCCCCcccHHHHHhCCCCEEEECHHHHhhh-hcCchhHHHHHHHHHHHHHC
Confidence 45667777778888887 56654 367666677777665557889987655433 33344456789999999999
Q ss_pred CCcEEEec
Q 023717 86 GIPVFVTG 93 (278)
Q Consensus 86 GI~VFaTG 93 (278)
||+|+|+|
T Consensus 603 ~i~viAeg 610 (640)
T PRK11059 603 ETQVFATG 610 (640)
T ss_pred CCeEEEEE
Confidence 99999985
No 84
>PRK09071 hypothetical protein; Validated
Probab=43.27 E-value=44 Score=32.35 Aligned_cols=137 Identities=15% Similarity=0.113 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHCCCcccEEEEE-cCceeecCCHHHHHHHHhc-CCCcccccc-cchHHHHhcCCCchhhH-HHHHHHH
Q 023717 7 FETAKEVEAIVRNNGAVPATIAIL-EGLPCVGLSTEELERLAKL-GSKAQKTAR-RDIAHVVATRGNGATTV-SATMFFA 82 (278)
Q Consensus 7 le~A~~~E~~vR~~GavPATIaii-~G~i~VGl~~~el~~la~~-~~~~~K~sr-RDl~~~~a~~~~GaTTV-aaTm~lA 82 (278)
.|-|.++=+.+=+..+-|+-||-+ =.-=.=|.|.+||.-+++. .+...++.. .|+...+-.|.++..|+ -.+.+++
T Consensus 23 ~eEa~~~~~~il~g~~~~~q~aAfL~alr~kgeT~eEi~g~~~a~r~~~~~~~~~~~iD~~~gtG~d~~~~~~~~~a~vl 102 (323)
T PRK09071 23 REEARQAMGMILDGEVEDDQLGAFLMLLRVKEETAEELAGFVEAIRERLQAPPLAVDLDWPSYAGKRRHLPWYLLAAKLL 102 (323)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCCCceecCCcCCCCCCcccHHHHHHHH
Confidence 344444444444455555554321 1101126899999888752 123334421 23332123444444343 3556778
Q ss_pred HHCCCcEEEecccccccCCCcccccc-ccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCccee
Q 023717 83 SMVGIPVFVTGGIGGVHRHGEHTMDI-SSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFF 159 (278)
Q Consensus 83 ~~aGI~VFaTGGIGGVHrg~~~t~Di-SaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy 159 (278)
..+|+||.-=|.- +.... =. |+|+-| +-|++--++.....+.|+..|+.-+ |..+.+|++.
T Consensus 103 A~~G~~V~kHGnr-----~~ssk-~g~saDvLe---------aLGv~~~~~~~~~~~~l~~~g~~fl-~ap~~hPa~~ 164 (323)
T PRK09071 103 AQNGYRVLLHGGG-----GHTAG-RLYTEQLLE---------ALGIPIARSWQEAEQALEEHNIAYL-PLEDFAPQLQ 164 (323)
T ss_pred HHCCCeEEEECCC-----CCCCC-cccHHHHHH---------HCCCCCCCCHHHHHHHHHhcCeEEe-ehHHhChHHH
Confidence 8899999998632 22111 23 777776 4577777888888899999988766 5566677664
No 85
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=42.76 E-value=1.7e+02 Score=24.80 Aligned_cols=71 Identities=13% Similarity=0.139 Sum_probs=36.7
Q ss_pred HhHhhhCCeeEEeecCCC--------CcceeecCCCCccCcccCCHHHHHHHHHHHHhcCCCCeEEEEeCCCccCCCChH
Q 023717 137 LEYLETHGVCVAAYKTNE--------FPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGR 208 (278)
Q Consensus 137 LE~LET~GV~V~gy~t~~--------fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~~ 208 (278)
.++++..+|||+.+.+.. +|.||. ...++..+...+.+--...+...-.+|...-+ ...
T Consensus 84 ~~~~~~~~iP~i~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~v~iv~~~~~-----~~~ 150 (299)
T cd04509 84 APVAEALKIPLISPGATAPGLTDKKGYPYLFR--------TGPSDEQQAEALADYIKEYNWKKVAILYDDDS-----YGR 150 (299)
T ss_pred HHHHhhCCceEEeccCCCcccccccCCCCEEE--------ecCCcHHHHHHHHHHHHHcCCcEEEEEecCch-----HHH
Confidence 467888999999997432 223322 12223333333333334456666656654322 344
Q ss_pred HHHHHHHHHHHH
Q 023717 209 VIESAIQSALRE 220 (278)
Q Consensus 209 ~i~~~i~~Al~e 220 (278)
...+.+++++++
T Consensus 151 ~~~~~~~~~~~~ 162 (299)
T cd04509 151 GLLEAFKAAFKK 162 (299)
T ss_pred HHHHHHHHHHHH
Confidence 455666666654
No 86
>PRK07478 short chain dehydrogenase; Provisional
Probab=42.71 E-value=1.6e+02 Score=25.56 Aligned_cols=71 Identities=15% Similarity=0.203 Sum_probs=41.5
Q ss_pred CCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCcceeecCCCC
Q 023717 86 GIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGS 165 (278)
Q Consensus 86 GI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~ 165 (278)
|=.+++|||-||+-+ .+...|.+-+- .|++++-..+. +....+.|+.+|..+. |
T Consensus 6 ~k~~lItGas~giG~------~ia~~l~~~G~-~v~~~~r~~~~---~~~~~~~~~~~~~~~~---------~------- 59 (254)
T PRK07478 6 GKVAIITGASSGIGR------AAAKLFAREGA-KVVVGARRQAE---LDQLVAEIRAEGGEAV---------A------- 59 (254)
T ss_pred CCEEEEeCCCChHHH------HHHHHHHHCCC-EEEEEeCCHHH---HHHHHHHHHhcCCcEE---------E-------
Confidence 446999999999944 56666665543 46666554432 3344555555543221 1
Q ss_pred ccCcccCCHHHHHHHHHH
Q 023717 166 KVPCRVDSPEDCARLIDV 183 (278)
Q Consensus 166 ~~~~r~d~~~e~A~~~~~ 183 (278)
++..+.+++++.+++..
T Consensus 60 -~~~D~~~~~~~~~~~~~ 76 (254)
T PRK07478 60 -LAGDVRDEAYAKALVAL 76 (254)
T ss_pred -EEcCCCCHHHHHHHHHH
Confidence 23346677777777664
No 87
>PRK07890 short chain dehydrogenase; Provisional
Probab=42.49 E-value=1.9e+02 Score=25.02 Aligned_cols=85 Identities=16% Similarity=0.275 Sum_probs=42.4
Q ss_pred CCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCcceeecCCCC
Q 023717 86 GIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGS 165 (278)
Q Consensus 86 GI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~ 165 (278)
+=.+|+|||-||+-+ .+..=|.+-+- .|++++-..+ +.....+-+...|..+.
T Consensus 5 ~k~vlItGa~~~IG~------~la~~l~~~G~-~V~~~~r~~~---~~~~~~~~~~~~~~~~~----------------- 57 (258)
T PRK07890 5 GKVVVVSGVGPGLGR------TLAVRAARAGA-DVVLAARTAE---RLDEVAAEIDDLGRRAL----------------- 57 (258)
T ss_pred CCEEEEECCCCcHHH------HHHHHHHHcCC-EEEEEeCCHH---HHHHHHHHHHHhCCceE-----------------
Confidence 446999999999955 44444444332 3444443322 23333333433232111
Q ss_pred ccCcccCCHHHHHHHHHH-HHhcCCCCeEEEEeC
Q 023717 166 KVPCRVDSPEDCARLIDV-NMKLKLGSGLVIGVP 198 (278)
Q Consensus 166 ~~~~r~d~~~e~A~~~~~-~~~l~l~~g~lvanP 198 (278)
.+...+.+++++.+++.. ..+++-. -+||.|.
T Consensus 58 ~~~~D~~~~~~~~~~~~~~~~~~g~~-d~vi~~a 90 (258)
T PRK07890 58 AVPTDITDEDQCANLVALALERFGRV-DALVNNA 90 (258)
T ss_pred EEecCCCCHHHHHHHHHHHHHHcCCc-cEEEECC
Confidence 112345677777777764 3344422 3455554
No 88
>PRK05876 short chain dehydrogenase; Provisional
Probab=42.19 E-value=1.8e+02 Score=26.21 Aligned_cols=100 Identities=17% Similarity=0.190 Sum_probs=51.8
Q ss_pred CCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCcceeecCCC
Q 023717 85 VGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSG 164 (278)
Q Consensus 85 aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg 164 (278)
.|=.+++|||-||+-+ -+...|.+.+- .|+++.-.. =++..+.+.|+.+|..+..+
T Consensus 5 ~~k~vlVTGas~gIG~------ala~~La~~G~-~Vv~~~r~~---~~l~~~~~~l~~~~~~~~~~-------------- 60 (275)
T PRK05876 5 PGRGAVITGGASGIGL------ATGTEFARRGA-RVVLGDVDK---PGLRQAVNHLRAEGFDVHGV-------------- 60 (275)
T ss_pred CCCEEEEeCCCchHHH------HHHHHHHHCCC-EEEEEeCCH---HHHHHHHHHHHhcCCeEEEE--------------
Confidence 3445999999999944 45555544432 233332111 23455566666665443321
Q ss_pred CccCcccCCHHHHHHHHHHHH-hcCCCCeEEEEeCCC----ccCCCChHHHHH
Q 023717 165 SKVPCRVDSPEDCARLIDVNM-KLKLGSGLVIGVPIP----REHAASGRVIES 212 (278)
Q Consensus 165 ~~~~~r~d~~~e~A~~~~~~~-~l~l~~g~lvanPiP----~e~~~~~~~i~~ 212 (278)
+.-+.+++++.+++..-. .+| +--+||-|.-- .-..++.+.+++
T Consensus 61 ---~~Dv~d~~~v~~~~~~~~~~~g-~id~li~nAg~~~~~~~~~~~~~~~~~ 109 (275)
T PRK05876 61 ---MCDVRHREEVTHLADEAFRLLG-HVDVVFSNAGIVVGGPIVEMTHDDWRW 109 (275)
T ss_pred ---eCCCCCHHHHHHHHHHHHHHcC-CCCEEEECCCcCCCCCcccCCHHHHHH
Confidence 344567778877776533 333 22355655421 122355555544
No 89
>PRK06801 hypothetical protein; Provisional
Probab=42.04 E-value=61 Score=30.89 Aligned_cols=129 Identities=18% Similarity=0.211 Sum_probs=79.5
Q ss_pred CCCchhHHHHHHHHHHHHHCCCcccEEEEEcCceeecCCHHHHHHHHhcCCCcccccccchHHHHhc-CCCchhhHHHHH
Q 023717 1 MPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVAT-RGNGATTVSATM 79 (278)
Q Consensus 1 lPyP~Nle~A~~~E~~vR~~GavPATIaii~G~i~VGl~~~el~~la~~~~~~~K~srRDl~~~~a~-~~~GaTTVaaTm 79 (278)
+||-+|++..+++-+..+..|+ .+..==|. ||=.++ .+ .... +.+--|+..-..
T Consensus 108 l~~eeNi~~t~~v~~~a~~~gv---~VE~ElG~--vgg~e~----------~v----------~~~~~~~~~~T~pe~a~ 162 (286)
T PRK06801 108 LEYEENVRQTREVVKMCHAVGV---SVEAELGA--VGGDEG----------GA----------LYGEADSAKFTDPQLAR 162 (286)
T ss_pred CCHHHHHHHHHHHHHHHHHcCC---eEEeecCc--ccCCCC----------Cc----------ccCCcccccCCCHHHHH
Confidence 5888999999999999999996 22111111 221111 11 0000 233456767777
Q ss_pred HHHHHCCCcEEEecccccccCCC----ccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCC
Q 023717 80 FFASMVGIPVFVTGGIGGVHRHG----EHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEF 155 (278)
Q Consensus 80 ~lA~~aGI~VFaTGGIGGVHrg~----~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~f 155 (278)
...+..|++.++. .+|=+|--. .-.||.-.++.+..++|++.. |.-.|=| ..+..+-..||.=+-+.|+-+
T Consensus 163 ~f~~~tgvD~LAv-aiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlH--GGSgi~~--e~~~~~i~~Gi~KINv~T~~~ 237 (286)
T PRK06801 163 DFVDRTGIDALAV-AIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLH--GGSGISD--ADFRRAIELGIHKINFYTGMS 237 (286)
T ss_pred HHHHHHCcCEEEe-ccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEE--CCCCCCH--HHHHHHHHcCCcEEEehhHHH
Confidence 7888889999999 898888622 245666666666667775333 3322221 335556678888887777777
Q ss_pred ccee
Q 023717 156 PAFF 159 (278)
Q Consensus 156 PaFy 159 (278)
-+|+
T Consensus 238 ~a~~ 241 (286)
T PRK06801 238 QAAL 241 (286)
T ss_pred HHHH
Confidence 6665
No 90
>PF00591 Glycos_transf_3: Glycosyl transferase family, a/b domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR000312 The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1V8G_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 3H5Q_A 1KHD_A 1KGZ_B 1AZY_A 1OTP_A ....
Probab=41.80 E-value=16 Score=33.26 Aligned_cols=121 Identities=24% Similarity=0.292 Sum_probs=67.9
Q ss_pred cEEEecccccccCCCccccccccchhh-hcCCCeEEEecccccccchhhhHhHhhhCCeeEE-eecC------CCCccee
Q 023717 88 PVFVTGGIGGVHRHGEHTMDISSDLTE-LGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVA-AYKT------NEFPAFF 159 (278)
Q Consensus 88 ~VFaTGGIGGVHrg~~~t~DiSaDL~e-L~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~-gy~t------~~fPaFy 159 (278)
+++=++|.||... .||.||.=..= |+..-+-|+==|.+++=----|.++||..||++- .... +.=-+|+
T Consensus 2 ~~~D~~gTGGd~~---~t~niSt~~a~vlAa~G~~V~kHG~r~~~~~~Gs~dvLe~LGv~~~~~~~~~~~~l~~~g~~fl 78 (252)
T PF00591_consen 2 PVVDICGTGGDGD---KTFNISTAAAIVLAAAGVPVAKHGNRGVTSKSGSADVLEALGVPIDLSPEEAQAQLEETGIAFL 78 (252)
T ss_dssp TEEEEEESSCSSS---TBHHHHHHHHHHHHHTTSEEEEEEESGCTTSSSHHHHHHHSTB-TT--HHHHHHHHHHHSEEEE
T ss_pred CceEEecCCCCCC---CceehHHHHHHHHHccCCcEecccCCCccccccHHHHHHhcCCCcCCCHHHHHHHhhccCeEEe
Confidence 3566889999654 59999864433 4556666776677777666678899999999982 1110 0112343
Q ss_pred ecCCCCccCcccCCHHHHHHHHHHHHhcCCCCeE----EEEeCCCccCCCChH---HHHHHHHHHHHH
Q 023717 160 TETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGL----VIGVPIPREHAASGR---VIESAIQSALRE 220 (278)
Q Consensus 160 ~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~----lvanPiP~e~~~~~~---~i~~~i~~Al~e 220 (278)
.... + .| ...+++..+++||+++-. =+.||....+.+-+- .+.+.+.+++++
T Consensus 79 ~~~~-~-~p-------~~~~l~~~R~~lg~rT~~N~l~pL~nP~~~~~~v~Gv~~~~~~~~~~~~~~~ 137 (252)
T PF00591_consen 79 FAPN-F-HP-------ALKRLAPVRRELGIRTVFNTLGPLLNPANAKHQVIGVFHPEYAELMAEALRD 137 (252)
T ss_dssp EHHH-H-SG-------GHHHHHHHHHHHTS--SHHHHGHHHHTT--SEEEEEHSCHHHHHHHHHHHCC
T ss_pred cchh-c-Cc-------chHHHHHHHHHcCCCCHHHhhhhhcCCcCCCcEEEEEeCHHHHHHHHHHHHh
Confidence 2211 1 11 245677788899986542 246787777665443 333344444443
No 91
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=41.69 E-value=74 Score=33.23 Aligned_cols=144 Identities=31% Similarity=0.435 Sum_probs=91.3
Q ss_pred HhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCC--CccccccccchhhhcCCC--eEEEecccccccchhhhHhHh
Q 023717 65 VATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRH--GEHTMDISSDLTELGRTP--VAVVSAGIKSILDIPRTLEYL 140 (278)
Q Consensus 65 ~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrg--~~~t~DiSaDL~eL~rtp--V~VVcaG~KsILDi~~TLE~L 140 (278)
+.....|+|-|-.-|.=|-.-|+|..+--| -|-+- +..-|- -+|.-+++|+= -.| =+|+.=|||+-+|
T Consensus 159 lvTSGPGATNvvtp~ADAlaDg~PlVvftG--QVptsaIGtDAFQ-EadiVgisRScTKwNv---mVkdVedlPrrI~-- 230 (675)
T KOG4166|consen 159 LVTSGPGATNVVTPLADALADGVPLVVFTG--QVPTSAIGTDAFQ-EADIVGISRSCTKWNV---MVKDVEDLPRRIE-- 230 (675)
T ss_pred EEecCCCcccccchhhHHhhcCCcEEEEec--ccchhhcccchhc-cCCeeeeeeccceehe---eeecHHHhhHHHH--
Confidence 334457899999889999999999776432 22221 011111 24555555541 111 1588999999887
Q ss_pred hhCCeeEEeecCCCCcceeecCCCCccCcccCCHHHHHHHHHHHHhcCCCCeEEEEeCCCccCCCCh------------H
Q 023717 141 ETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASG------------R 208 (278)
Q Consensus 141 ET~GV~V~gy~t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~------------~ 208 (278)
-||+-..||-+=|--+|-|.++-+- |+-+|||....++. +
T Consensus 231 ---------------EAFeiATSGRPGPVLVDlPKDvta~-------------~l~~pip~~~~lPsn~~m~~~~~~~~~ 282 (675)
T KOG4166|consen 231 ---------------EAFEIATSGRPGPVLVDLPKDVTAQ-------------LLIPPIPQAMRLPSNAYMSRMPKPPED 282 (675)
T ss_pred ---------------HHhhhhccCCCCCeEeeCcHHHHHH-------------HhcCCchhhhcCCchhhHhhCCCCchh
Confidence 3899999999999999999887442 44566666666554 3
Q ss_pred HHHHHHHHHHH---HHHH------cCCCCccCChHHHHHHHHHhC
Q 023717 209 VIESAIQSALR---EARE------KNITGNAETPFLLARVNELTG 244 (278)
Q Consensus 209 ~i~~~i~~Al~---ea~~------~gi~Gk~vTPflL~~i~elT~ 244 (278)
.+-.-|+++.. +|++ .|+--..=-|-||+++.|+++
T Consensus 283 ~v~~~i~~~a~Li~laKKPVlyvG~G~Ln~~d~p~lL~~fser~q 327 (675)
T KOG4166|consen 283 FVMSHIEQIARLISLAKKPVLYVGGGCLNSSDGPRLLGRFSERTQ 327 (675)
T ss_pred hHHHHHHHHHHHHHhccCceEEeCcccccCCcchHHHHHHHHhhc
Confidence 34455555543 3332 234444556889999999875
No 92
>TIGR03527 selenium_YedF selenium metabolism protein YedF. Members of this protein family are about 200 amino acids in size, and include the uncharacterized YedF protein of Escherichia coli. This family shares an N-terminal domain, modeled by pfam01206, with the sulfurtransferase TusA (also called SirA). The C-terminal domain includes a typical redox-active disulfide motif, CGXC. This protein family found only among those genomes that also carry the selenium donor protein SelD, and its connection to selenium metabolism is indicated by the method of partial phylogenetic profiling vs. SelD. Its gene typically is found next to selD. Members of this family are found even when selenocysteine and selenouridine biosynthesis pathways are, except for SelD, completely absent, as in Enterococcus faecalis. Its role in selenium metabolism is unclear, but may include either detoxification or a role in labile selenoprotein biosynthesis.
Probab=41.51 E-value=48 Score=29.82 Aligned_cols=72 Identities=25% Similarity=0.330 Sum_probs=52.9
Q ss_pred hhhhcCCC--eEEEecccccccc---hhhhHhHhhhCCeeEEeecCCCCcceeecCCCCccCcccCCHHHHHHHHHHHHh
Q 023717 112 LTELGRTP--VAVVSAGIKSILD---IPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMK 186 (278)
Q Consensus 112 L~eL~rtp--V~VVcaG~KsILD---i~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~ 186 (278)
|.|...-| +..+..|+|.-.+ +...|+.||.+||.|...+| |-.||--..-..+ .++.+--++++.+...++
T Consensus 114 L~e~~~~p~~Ifl~n~gV~l~~~~~~~~e~Lk~L~~~Gv~I~~CGt--Cl~~~gl~~~~~v-G~i~nm~~i~~~~~~adk 190 (194)
T TIGR03527 114 LSELDPLPKRILFVNGGVKLTTEGSEVLEDLKELEKKGVEILSCGT--CLDFYGLKDKLKV-GTITNMYDIVEALTTADK 190 (194)
T ss_pred HHhCCCCceEEEEEccceeeccCCchHHHHHHHHHHCCCEEEEeHH--HHHhcCCcccccC-CccCCHHHHHHHHHhcCC
Confidence 44555545 6777788876655 66778889999999999886 6777776666665 488888888887776543
No 93
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=41.46 E-value=63 Score=22.06 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=19.9
Q ss_pred CCCcccEEEEEcCceeecCCHHHHHHH
Q 023717 20 NGAVPATIAILEGLPCVGLSTEELERL 46 (278)
Q Consensus 20 ~GavPATIaii~G~i~VGl~~~el~~l 46 (278)
.+.+|..+ ++|++.+|.++++|+.+
T Consensus 48 ~~~vP~~~--~~~~~~~g~~~~~i~~~ 72 (74)
T TIGR02196 48 QRGVPVIV--IGHKIIVGFDPEKLDQL 72 (74)
T ss_pred CCcccEEE--ECCEEEeeCCHHHHHHH
Confidence 35789664 58999999999998765
No 94
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=41.09 E-value=43 Score=24.15 Aligned_cols=37 Identities=27% Similarity=0.461 Sum_probs=30.7
Q ss_pred eEEEecccccccc-hhhhHhHhhhCCeeEEeecCCCCc
Q 023717 120 VAVVSAGIKSILD-IPRTLEYLETHGVCVAAYKTNEFP 156 (278)
Q Consensus 120 V~VVcaG~KsILD-i~~TLE~LET~GV~V~gy~t~~fP 156 (278)
|.||..|.++.-. ..+.++.|...+|.++.+++.+.-
T Consensus 3 VsvVG~g~~~~~gv~~~~~~~L~~~~i~~i~~~~s~~~ 40 (63)
T cd04920 3 VSLVGRGIRSLLHKLGPALEVFGKKPVHLVSQAANDLN 40 (63)
T ss_pred EEEECCCcccCccHHHHHHHHHhcCCceEEEEeCCCCe
Confidence 7889999988877 568889999999999999965443
No 95
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=41.01 E-value=1.1e+02 Score=29.97 Aligned_cols=84 Identities=18% Similarity=0.218 Sum_probs=50.8
Q ss_pred HHHHHHCCCcEEEeccccccc------CC-Ccccccc--ccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEe
Q 023717 79 MFFASMVGIPVFVTGGIGGVH------RH-GEHTMDI--SSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAA 149 (278)
Q Consensus 79 m~lA~~aGI~VFaTGGIGGVH------rg-~~~t~Di--SaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~g 149 (278)
+.-+..+|++.+.-|+-||-. +| ....|.+ -.++.+-.+.|| +-.-|.++-.|+-+.|.. --..|-+-+
T Consensus 154 a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipV-IAdGGI~~~~Di~KaLa~-GA~aV~vG~ 231 (326)
T PRK05458 154 VRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPI-IADGGIRTHGDIAKSIRF-GATMVMIGS 231 (326)
T ss_pred HHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCCE-EEeCCCCCHHHHHHHHHh-CCCEEEech
Confidence 444556888888877777722 11 2234555 335555456663 356788999999999876 445555544
Q ss_pred e--cCCCCcceeecCCC
Q 023717 150 Y--KTNEFPAFFTETSG 164 (278)
Q Consensus 150 y--~t~~fPaFy~~~Sg 164 (278)
+ +|+|=|+=|....|
T Consensus 232 ~~~~~~espg~~~~~~g 248 (326)
T PRK05458 232 LFAGHEESPGKTVEIDG 248 (326)
T ss_pred hhcCCccCCCceeeecc
Confidence 4 36666665544444
No 96
>PRK07677 short chain dehydrogenase; Provisional
Probab=40.72 E-value=1.6e+02 Score=25.54 Aligned_cols=32 Identities=25% Similarity=0.484 Sum_probs=19.7
Q ss_pred cEEEecccccccCCCccccccccchhhhcCCCeEEEecc
Q 023717 88 PVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAG 126 (278)
Q Consensus 88 ~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG 126 (278)
.+++|||-||+.+ .+..-|.+-+- .|++++..
T Consensus 3 ~~lItG~s~giG~------~ia~~l~~~G~-~Vi~~~r~ 34 (252)
T PRK07677 3 VVIITGGSSGMGK------AMAKRFAEEGA-NVVITGRT 34 (252)
T ss_pred EEEEeCCCChHHH------HHHHHHHHCCC-EEEEEeCC
Confidence 5789999999855 45554544333 45555444
No 97
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=40.63 E-value=2.3e+02 Score=24.08 Aligned_cols=20 Identities=15% Similarity=0.019 Sum_probs=16.4
Q ss_pred hhhhHhHhhhCCeeEEeecC
Q 023717 133 IPRTLEYLETHGVCVAAYKT 152 (278)
Q Consensus 133 i~~TLE~LET~GV~V~gy~t 152 (278)
.....++++..||||+.+.+
T Consensus 79 ~~~~~~~~~~~~ip~i~~~~ 98 (298)
T cd06268 79 ALAAAPVAEEAGVPLISPGA 98 (298)
T ss_pred HHhhHHHHHhCCCcEEccCC
Confidence 34567899999999999963
No 98
>PRK03202 6-phosphofructokinase; Provisional
Probab=40.61 E-value=53 Score=31.72 Aligned_cols=71 Identities=20% Similarity=0.129 Sum_probs=43.8
Q ss_pred EcCceeecCCHHHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCCccccccc
Q 023717 30 LEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDIS 109 (278)
Q Consensus 30 i~G~i~VGl~~~el~~la~~~~~~~K~srRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrg~~~t~DiS 109 (278)
++|++.- |+.++++.+...+......||.+...- -.-..-...-.+..+|..++.= |+..||+..
T Consensus 45 ~~~~~~~-l~~~~v~~~~~~gGs~LgtsR~~~~~~-------~~~~~~~~~~l~~~~Id~Li~I-------GGd~s~~~a 109 (320)
T PRK03202 45 LEGDIVK-LDLKSVSDIINRGGTILGSARFPEFKD-------EEGRAKAIENLKKLGIDALVVI-------GGDGSYMGA 109 (320)
T ss_pred cCCCEEE-CCHHHHhhHHhCCCcccccCCCCCcCC-------HHHHHHHHHHHHHcCCCEEEEe-------CChHHHHHH
Confidence 3444433 889999888766555777777553110 0112334555677899887763 334588888
Q ss_pred cchhhh
Q 023717 110 SDLTEL 115 (278)
Q Consensus 110 aDL~eL 115 (278)
..|.|.
T Consensus 110 ~~L~e~ 115 (320)
T PRK03202 110 KRLTEH 115 (320)
T ss_pred HHHHhc
Confidence 888874
No 99
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=40.61 E-value=30 Score=34.82 Aligned_cols=62 Identities=18% Similarity=0.183 Sum_probs=41.6
Q ss_pred CcEEEecccccccCCCccccccccchhhhcCCCeEEEecccc---cccchhhhH-hHhhh--CCeeEEeec
Q 023717 87 IPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIK---SILDIPRTL-EYLET--HGVCVAAYK 151 (278)
Q Consensus 87 I~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~K---sILDi~~TL-E~LET--~GV~V~gy~ 151 (278)
-++.+.=|.||.+.|.. .-++||..+-..||++|...-. |+-=+=+|+ +|... .||++.|.=
T Consensus 78 ~d~~vIEG~gGl~dg~~---~s~adla~~l~~PviLVv~~~~g~~s~aa~l~g~~~~~~~~~~~~~i~GvI 145 (433)
T PRK13896 78 GDICVVEGVMGLYDGDV---SSTAMVAEALDLPVVLVVDAKAGMESVAATALGFRAYADRIGRDIDVAGVI 145 (433)
T ss_pred CCEEEEECCCccccCCC---CCHHHHHHHHCCCEEEEEcCcccHHHHHHHHHHHHHHHHhccCCCcEEEEE
Confidence 67888889999987631 3488999999999999965322 333333443 44443 368887763
No 100
>PF05589 DUF768: Protein of unknown function (DUF768); InterPro: IPR008486 This family consists of several uncharacterised hypothetical proteins from Rhizobium loti (Mesorhizobium loti).
Probab=40.52 E-value=42 Score=25.63 Aligned_cols=32 Identities=13% Similarity=0.134 Sum_probs=22.9
Q ss_pred CCccCCCChHHHHHHHHHHHHHHHHcCCCCcc
Q 023717 199 IPREHAASGRVIESAIQSALREAREKNITGNA 230 (278)
Q Consensus 199 iP~e~~~~~~~i~~~i~~Al~ea~~~gi~Gk~ 230 (278)
+|..-.-|.-.+.++-++.+++|+++||.+.+
T Consensus 17 V~~~~~~d~is~~~La~kl~adA~a~Gi~~~e 48 (64)
T PF05589_consen 17 VPDTPKADIISAAELAEKLFADAEAAGIPREE 48 (64)
T ss_pred CCCccccchhhHHHHHHHHHHHHHHcCCCHHH
Confidence 33333333446688999999999999998654
No 101
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=40.48 E-value=42 Score=34.01 Aligned_cols=133 Identities=23% Similarity=0.310 Sum_probs=71.2
Q ss_pred EEEecccccccchhhhHhHhhhCCe---eEEeecCC---CCcceeecCCCCccCcccCCHHHHHHHHHHHHhc--CCCCe
Q 023717 121 AVVSAGIKSILDIPRTLEYLETHGV---CVAAYKTN---EFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKL--KLGSG 192 (278)
Q Consensus 121 ~VVcaG~KsILDi~~TLE~LET~GV---~V~gy~t~---~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l--~l~~g 192 (278)
+|+|-|..+==++++|+|+|++.|. +++.|..- .|-.++. +--.++++..+-...+++ .++|=
T Consensus 181 iVl~PGvNdge~L~kT~~dL~~~g~~~~~~~~~~pvGlt~~n~~~i---------~~~t~~~l~~~k~i~re~~~E~~~~ 251 (414)
T COG1625 181 IVLCPGVNDGEELEKTLEDLEEWGAHEVILMRVVPVGLTRYNRPGI---------RPPTPHELEEFKEIVREFDRELGSI 251 (414)
T ss_pred EEEcCCcCcHHHHHHHHHHHHHhCcCceeEEEeecceeeecCCCCC---------CCCCHHHHHHHHHHHHHHHHhcCce
Confidence 6899999999999999999999864 34432111 1111121 222445555544433333 33443
Q ss_pred EEEEeCCCccCCCCh-HHHH---HHHHHHHHH--HHHcCCCCccCChHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHH
Q 023717 193 LVIGVPIPREHAASG-RVIE---SAIQSALRE--AREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKIS 266 (278)
Q Consensus 193 ~lvanPiP~e~~~~~-~~i~---~~i~~Al~e--a~~~gi~Gk~vTPflL~~i~elT~G~Sl~aNiaLl~nNa~laa~IA 266 (278)
.|...|+|.+..=.+ ..++ .-|.+.|.+ -+.--++|+=-.|++..-+..+- ++ -|+..++||.-.|..|.
T Consensus 252 ~V~g~Pl~~~~~~e~f~~~~~~v~~i~~~L~~~~~~a~iltg~ia~p~~~~~~~~~e--~~--~~v~vv~~~k~~g~~i~ 327 (414)
T COG1625 252 RVTGTPLPDALLGEPFPQLEDGVGEIREFLPEVDFEATILTGEIAAPRIRTIVRGLE--KA--EEVNVVKNEKDGGLLIT 327 (414)
T ss_pred EEeCCCCCchhhcCcchhhhccchhhhhhcccccccccccccccccceeeehhhhcc--cc--ceeeeeeehhhcceeee
Confidence 344456765432221 1222 223444443 33345678888888875555421 11 25566666666655554
No 102
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=40.36 E-value=46 Score=33.87 Aligned_cols=54 Identities=28% Similarity=0.383 Sum_probs=38.9
Q ss_pred cCCHHHHHHHHhcCCCccc--------ccccchHHHHhcCCCchhhHHHHHHHH---HHCCCcEEEecccc
Q 023717 37 GLSTEELERLAKLGSKAQK--------TARRDIAHVVATRGNGATTVSATMFFA---SMVGIPVFVTGGIG 96 (278)
Q Consensus 37 Gl~~~el~~la~~~~~~~K--------~srRDl~~~~a~~~~GaTTVaaTm~lA---~~aGI~VFaTGGIG 96 (278)
+.|.++...|.+.+-+..| |.+|.+. ..|-.|+++-+.++ +..|++|+|.|||-
T Consensus 274 ~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~------~~g~~~~~a~~~~~~~~~~~~~~viadGgi~ 338 (475)
T TIGR01303 274 VVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMT------GVGRPQFSAVLECAAEARKLGGHVWADGGVR 338 (475)
T ss_pred cCCHHHHHHHHHhCCCEEEECCcCCccccCcccc------CCCCchHHHHHHHHHHHHHcCCcEEEeCCCC
Confidence 4789999999887667888 7677321 23556677766664 66699999999874
No 103
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=39.65 E-value=1.9e+02 Score=23.87 Aligned_cols=92 Identities=16% Similarity=0.092 Sum_probs=52.0
Q ss_pred hhhhHhHhhhCCeeEEeecCCCCcceeecCCCC-ccCcccCCHHHHHHHHHHHHhcCCCCeEEEEeCC----Ccc--CCC
Q 023717 133 IPRTLEYLETHGVCVAAYKTNEFPAFFTETSGS-KVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPI----PRE--HAA 205 (278)
Q Consensus 133 i~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~-~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPi----P~e--~~~ 205 (278)
+..-.++|+..|+.|.++....+........+- .-+ |-...+.+-+.++.-..||.+. ++..|- +.+ .+-
T Consensus 29 ~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~--i~~~~g~~~~~~~~~~~~ 105 (213)
T PF01261_consen 29 AEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKY--IVVHSGRYPSGPEDDTEE 105 (213)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSE--EEEECTTESSSTTSSHHH
T ss_pred HHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCc--eeecCcccccccCCCHHH
Confidence 455567899999999988732221111110000 001 3334677778888888887444 444433 221 122
Q ss_pred ChHHHHHHHHHHHHHHHHcCCC
Q 023717 206 SGRVIESAIQSALREAREKNIT 227 (278)
Q Consensus 206 ~~~~i~~~i~~Al~ea~~~gi~ 227 (278)
..+.+.+.+++....|++.|++
T Consensus 106 ~~~~~~~~l~~l~~~a~~~gv~ 127 (213)
T PF01261_consen 106 NWERLAENLRELAEIAEEYGVR 127 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHHHhhhhhhcce
Confidence 3445556677888888888983
No 104
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=39.09 E-value=1.9e+02 Score=29.62 Aligned_cols=185 Identities=18% Similarity=0.148 Sum_probs=108.4
Q ss_pred CCHHHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHHHHHHH---HCCCcEEEecccccccCCCccccccccchhh
Q 023717 38 LSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFAS---MVGIPVFVTGGIGGVHRHGEHTMDISSDLTE 114 (278)
Q Consensus 38 l~~~el~~la~~~~~~~K~srRDl~~~~a~~~~GaTTVaaTm~lA~---~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~e 114 (278)
|+++|++|+.+.+=...-+|--=....+.+++-|-..+.-.|...+ .+||++-+
T Consensus 126 l~~~d~~RI~~~~lspl~iSVhat~p~lR~~ll~n~~a~~il~~l~~l~~~~I~~h~----------------------- 182 (433)
T TIGR03279 126 LPPAEWQRIEQLRLSPLYVSVHATEPSLRARLLKNPRAGLILEQLKWFQERRLQLHA----------------------- 182 (433)
T ss_pred CCHHHHHHHHHcCCCCEEEEEecCCHHHHHHHhCCCCHHHHHHHHHHHHHcCCeEEE-----------------------
Confidence 7899999998754456666665555556666555555544444433 35775432
Q ss_pred hcCCCeEEEecccccccchhhhHhHhhhC---------CeeEEeec-CCCCcceeecCCCCccCcccCCHHHHHHHHHHH
Q 023717 115 LGRTPVAVVSAGIKSILDIPRTLEYLETH---------GVCVAAYK-TNEFPAFFTETSGSKVPCRVDSPEDCARLIDVN 184 (278)
Q Consensus 115 L~rtpV~VVcaG~KsILDi~~TLE~LET~---------GV~V~gy~-t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~ 184 (278)
=+|+|-|...==++.+|+++|+.. .|-||=.| |..=+++| |.+-=+++++++++..-
T Consensus 183 -----qiVlcPGiNDg~~L~~Ti~dL~~~~~~~~P~v~S~avVPVGlTk~R~~l~--------~l~~~~~e~A~~vi~~i 249 (433)
T TIGR03279 183 -----QVVVCPGINDGKHLERTLRDLAQFHDGDWPTVLSVAVVPVGLTRFRPEED--------ELTPVTPECARRVIAQV 249 (433)
T ss_pred -----EEEEcCCcCCHHHHHHHHHHHHhhcccCCCceeEEEEEccccccCCCCCC--------CCccCCHHHHHHHHHHH
Confidence 268999998888899999999977 45666666 55445544 22333566776666532
Q ss_pred ------HhcCCCCeEEE--------E-eCCCccCCCChH-----------HHHHHHHHHHHHHHHc--------CCCCcc
Q 023717 185 ------MKLKLGSGLVI--------G-VPIPREHAASGR-----------VIESAIQSALREAREK--------NITGNA 230 (278)
Q Consensus 185 ------~~l~l~~g~lv--------a-nPiP~e~~~~~~-----------~i~~~i~~Al~ea~~~--------gi~Gk~ 230 (278)
..-...+..+. | .|+|++..-++= ...+-.++++++.... =++|..
T Consensus 250 e~~q~~~~~~~g~~fv~~sDEfYl~A~~~~P~~~~Y~~~pQ~enGVGm~r~f~~e~~~~~~~l~~~~~~~~~~~~vtG~~ 329 (433)
T TIGR03279 250 EALQTQFQRQLGSRFAWLADEWYLIAGEPLPPRAHYEDYPQLENGVGSIRSFLEEFDRQAEHLPKKIAPARRLSWVVGNA 329 (433)
T ss_pred HHHHHHHHHHcCCceEEEchhhhhhcCCCCCChhHcCCCcccccchhhHHHHHHHHHHHHHhchhhcCCCcEEEEEEecc
Confidence 12234455533 2 588876544320 1111222333333221 136889
Q ss_pred CChHHHHHHHHHhCCccHHHHHHHHHHH
Q 023717 231 ETPFLLARVNELTGGLSLASNIALVKNN 258 (278)
Q Consensus 231 vTPflL~~i~elT~G~Sl~aNiaLl~nN 258 (278)
.-||+-.-++++..-.-++.++--|+|+
T Consensus 330 ~~~~~~~~~~~l~~~~~~~v~v~~i~N~ 357 (433)
T TIGR03279 330 VEQAFEPLVERLNAVEGLELDLHGLASD 357 (433)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEeccC
Confidence 9999988888776544444444444443
No 105
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=38.88 E-value=2.1e+02 Score=28.08 Aligned_cols=66 Identities=17% Similarity=0.254 Sum_probs=33.4
Q ss_pred HHHHHHHHHHCCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccc---cchhhhHhHhhhCCeeEE
Q 023717 75 VSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSI---LDIPRTLEYLETHGVCVA 148 (278)
Q Consensus 75 VaaTm~lA~~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsI---LDi~~TLE~LET~GV~V~ 148 (278)
+-.-+.+|...+|.+..+| .|.... ..++. ..+.+..+.+++.+++++ -|=-++-++|+.+|||+.
T Consensus 63 ~~~l~~~a~~~~id~I~pg-~g~~se----~~~~a---~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~gip~p 131 (449)
T TIGR00514 63 IPNIISAAEITGADAIHPG-YGFLSE----NANFA---EQCERSGFTFIGPSAESIRLMGDKVSAIETMKKAGVPCV 131 (449)
T ss_pred HHHHHHHHHHhCCCEEEeC-CCcccc----CHHHH---HHHHHCCCcEECcCHHHHHHhCCHHHHHHHHHHCCCCCC
Confidence 3345666777777766664 332211 11111 122233344455555444 355566677777777764
No 106
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=38.74 E-value=2e+02 Score=24.64 Aligned_cols=86 Identities=23% Similarity=0.231 Sum_probs=44.4
Q ss_pred CCCcEEEecccccccCCCccccccccchhhhcCCCeEEEec-ccccccchhhhHhHhhhCCeeEEeecCCCCcceeecCC
Q 023717 85 VGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSA-GIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETS 163 (278)
Q Consensus 85 aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVca-G~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~S 163 (278)
.|=.+++|||-||+-+ .+...|.+.+- .|++++. ... ....+.+.++..|..+.
T Consensus 3 ~~~~vlItGa~g~iG~------~~a~~l~~~g~-~v~~~~~r~~~---~~~~~~~~~~~~~~~~~--------------- 57 (250)
T PRK08063 3 SGKVALVTGSSRGIGK------AIALRLAEEGY-DIAVNYARSRK---AAEETAEEIEALGRKAL--------------- 57 (250)
T ss_pred CCCEEEEeCCCchHHH------HHHHHHHHCCC-EEEEEcCCCHH---HHHHHHHHHHhcCCeEE---------------
Confidence 4557999999999944 56666665442 2333221 111 12344444544332111
Q ss_pred CCccCcccCCHHHHHHHHHHHHh-cCCCCeEEEEeC
Q 023717 164 GSKVPCRVDSPEDCARLIDVNMK-LKLGSGLVIGVP 198 (278)
Q Consensus 164 g~~~~~r~d~~~e~A~~~~~~~~-l~l~~g~lvanP 198 (278)
.++..+.+++++.+++..-.. ++ +--+||.|.
T Consensus 58 --~~~~D~~~~~~~~~~~~~~~~~~~-~id~vi~~a 90 (250)
T PRK08063 58 --AVKANVGDVEKIKEMFAQIDEEFG-RLDVFVNNA 90 (250)
T ss_pred --EEEcCCCCHHHHHHHHHHHHHHcC-CCCEEEECC
Confidence 123345678888888775443 33 223455543
No 107
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=38.48 E-value=21 Score=35.28 Aligned_cols=127 Identities=19% Similarity=0.235 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHHHCCCcccEEEEEcCceeecCCHH---HHHHHHhcCCCcccccccchHHHH---hcCC---------C
Q 023717 6 NFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTE---ELERLAKLGSKAQKTARRDIAHVV---ATRG---------N 70 (278)
Q Consensus 6 Nle~A~~~E~~vR~~GavPATIaii~G~i~VGl~~~---el~~la~~~~~~~K~srRDl~~~~---a~~~---------~ 70 (278)
+-.+.-.+|+++| .||.---+- +-+| ++. +|+.|++- +..+-+..||..+ .+|. +
T Consensus 145 ~~~l~~sVedAlr-LGAdAV~~t-----vy~G-s~~E~~ml~~l~~i---~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~ 214 (348)
T PRK09250 145 DQALTASVEDALR-LGAVAVGAT-----IYFG-SEESRRQIEEISEA---FEEAHELGLATVLWSYLRNSAFKKDGDYHT 214 (348)
T ss_pred cccceecHHHHHH-CCCCEEEEE-----EecC-CHHHHHHHHHHHHH---HHHHHHhCCCEEEEecccCcccCCcccccc
Confidence 4445566899888 565522222 2233 444 44455442 3445555665443 2221 1
Q ss_pred chhhHHHHHHHHHHCC---CcEEEecccccccC---CC-----cccccc--ccchhh--hcCC---CeEEEecccccccc
Q 023717 71 GATTVSATMFFASMVG---IPVFVTGGIGGVHR---HG-----EHTMDI--SSDLTE--LGRT---PVAVVSAGIKSILD 132 (278)
Q Consensus 71 GaTTVaaTm~lA~~aG---I~VFaTGGIGGVHr---g~-----~~t~Di--SaDL~e--L~rt---pV~VVcaG~KsILD 132 (278)
....++....+|.-.| |||=-||-.++-++ |- -++.|+ ++|+.+ ...+ |+-|||||-.+. +
T Consensus 215 ~~d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~-~ 293 (348)
T PRK09250 215 AADLTGQANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASK-G 293 (348)
T ss_pred cHHHHHHHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCC-C
Confidence 2357888889999999 88888875555322 11 112333 333333 4445 788888888887 8
Q ss_pred hhhhHhHhhhC
Q 023717 133 IPRTLEYLETH 143 (278)
Q Consensus 133 i~~TLE~LET~ 143 (278)
-...|+..++.
T Consensus 294 ~~e~L~~v~~a 304 (348)
T PRK09250 294 EDDLLDAVRTA 304 (348)
T ss_pred HHHHHHHHHHH
Confidence 88889988887
No 108
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=38.40 E-value=1.8e+02 Score=26.49 Aligned_cols=38 Identities=21% Similarity=0.039 Sum_probs=24.8
Q ss_pred hhhcCC-CeEEEecccccccchhhhHhHhhhCCeeEEeec
Q 023717 113 TELGRT-PVAVVSAGIKSILDIPRTLEYLETHGVCVAAYK 151 (278)
Q Consensus 113 ~eL~rt-pV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~ 151 (278)
.+|-+. .|.+|. |+-+--......++++..+||++++.
T Consensus 60 ~~li~~~~v~aii-g~~~s~~~~~~~~~~~~~~ip~i~~~ 98 (346)
T cd06330 60 RELVENEGVDMLI-GLISSGVALAVAPVAEELKVFFIATD 98 (346)
T ss_pred HHHHhccCCcEEE-cccchHHHHHHHHHHHHcCCeEEEcC
Confidence 344444 565555 44333344566789999999999985
No 109
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=38.39 E-value=1.5e+02 Score=27.13 Aligned_cols=81 Identities=23% Similarity=0.315 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHHHHHCCCcccEEEEEcCceeecCCHHHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHHHHHHHH
Q 023717 5 QNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASM 84 (278)
Q Consensus 5 ~Nle~A~~~E~~vR~~GavPATIaii~G~i~VGl~~~el~~la~~~~~~~K~srRDl~~~~a~~~~GaTTVaaTm~lA~~ 84 (278)
.|.+.+..+=+..|+.| ..||+=| .|..-.-+.+|.+..-+.+|+.|.=+.... ........|.+-..+|+.
T Consensus 133 ~~~~~~~~~l~~L~~~G---~~ialDD----FGtG~ssl~~L~~l~~d~iKID~~fi~~i~-~~~~~~~iv~~iv~la~~ 204 (256)
T COG2200 133 DDLDTALALLRQLRELG---VRIALDD----FGTGYSSLSYLKRLPPDILKIDRSFVRDLE-TDARDQAIVRAIVALAHK 204 (256)
T ss_pred cCHHHHHHHHHHHHHCC---CeEEEEC----CCCCHHHHHHHhhCCCCeEEECHHHHhhcc-cCcchHHHHHHHHHHHHH
Confidence 46667777778888888 3788776 888889999998876678999875433322 233344789999999999
Q ss_pred CCCcEEEec
Q 023717 85 VGIPVFVTG 93 (278)
Q Consensus 85 aGI~VFaTG 93 (278)
.|++|.|-|
T Consensus 205 l~~~vvaEG 213 (256)
T COG2200 205 LGLTVVAEG 213 (256)
T ss_pred CCCEEEEee
Confidence 999999864
No 110
>PRK09072 short chain dehydrogenase; Provisional
Probab=38.22 E-value=1.3e+02 Score=26.46 Aligned_cols=82 Identities=15% Similarity=0.196 Sum_probs=46.8
Q ss_pred CcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCcceeecCCCCc
Q 023717 87 IPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSK 166 (278)
Q Consensus 87 I~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~~ 166 (278)
=.+.+|||-||+.+ .+...|.+-+- .|++++...+..-++...+ + .+. +. -|
T Consensus 6 ~~vlItG~s~~iG~------~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~-~~~--------~~-~~-------- 57 (263)
T PRK09072 6 KRVLLTGASGGIGQ------ALAEALAAAGA-RLLLVGRNAEKLEALAARL---P-YPG--------RH-RW-------- 57 (263)
T ss_pred CEEEEECCCchHHH------HHHHHHHHCCC-EEEEEECCHHHHHHHHHHH---h-cCC--------ce-EE--------
Confidence 35899999999944 67777777664 4777776544432222211 1 111 10 11
Q ss_pred cCcccCCHHHHHHHHHHHHhcCCCCeEEEE
Q 023717 167 VPCRVDSPEDCARLIDVNMKLKLGSGLVIG 196 (278)
Q Consensus 167 ~~~r~d~~~e~A~~~~~~~~l~l~~g~lva 196 (278)
.+..+.+++++.++++....++-..+++.+
T Consensus 58 ~~~D~~d~~~~~~~~~~~~~~~~id~lv~~ 87 (263)
T PRK09072 58 VVADLTSEAGREAVLARAREMGGINVLINN 87 (263)
T ss_pred EEccCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 134466788888887766555544454443
No 111
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=37.57 E-value=1.2e+02 Score=27.63 Aligned_cols=68 Identities=15% Similarity=0.002 Sum_probs=39.2
Q ss_pred HHHHHHHHCCCcEEEeccccccc-----CCCccccc-----cccchhhhc---CCCeEEEecccccccchhhhHhHhhhC
Q 023717 77 ATMFFASMVGIPVFVTGGIGGVH-----RHGEHTMD-----ISSDLTELG---RTPVAVVSAGIKSILDIPRTLEYLETH 143 (278)
Q Consensus 77 aTm~lA~~aGI~VFaTGGIGGVH-----rg~~~t~D-----iSaDL~eL~---rtpV~VVcaG~KsILDi~~TLE~LET~ 143 (278)
.+..+|+..|++||+|..-.--. .|+...+| ...++.++. ...+++=|+|.+... ..++.|...
T Consensus 159 ~a~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~~d~vid~~g~~~~~---~~~~~l~~~ 235 (324)
T cd08291 159 MLVRLCKADGIKVINIVRRKEQVDLLKKIGAEYVLNSSDPDFLEDLKELIAKLNATIFFDAVGGGLTG---QILLAMPYG 235 (324)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEECCCccHHHHHHHHhCCCCCcEEEECCCcHHHH---HHHHhhCCC
Confidence 45668899999999886421000 12222333 333344443 246888888877653 357777777
Q ss_pred CeeE
Q 023717 144 GVCV 147 (278)
Q Consensus 144 GV~V 147 (278)
|.-|
T Consensus 236 G~~v 239 (324)
T cd08291 236 STLY 239 (324)
T ss_pred CEEE
Confidence 7543
No 112
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=36.74 E-value=32 Score=29.60 Aligned_cols=42 Identities=21% Similarity=0.207 Sum_probs=35.1
Q ss_pred hhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCC
Q 023717 114 ELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEF 155 (278)
Q Consensus 114 eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~f 155 (278)
.++..-++|+.++.-++-++.+++++|+..|++++|.=-+.+
T Consensus 149 ~~~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~ 190 (204)
T TIGR01007 149 RACDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKV 190 (204)
T ss_pred HhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCc
Confidence 456777888889999999999999999999999999743333
No 113
>TIGR03728 glyco_access_1 glycosyltransferase, SP_1767 family. Members of this protein family are putative glycosyltransferases. Some members are found close to genes for the accessory secretory (SecA2) system, and are suggested by Partial Phylogenetic Profiling to correlate with SecA2 systems. Glycosylation, therefore, may occur in the cytosol prior to secretion.
Probab=36.51 E-value=1.3e+02 Score=28.93 Aligned_cols=64 Identities=20% Similarity=0.307 Sum_probs=47.9
Q ss_pred cchhhhHhHhhhCCeeEEeecCCCCcceeecCCCCccCcccCCHHHHHHHHHHHHhcCCCCeEEEEeCC
Q 023717 131 LDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPI 199 (278)
Q Consensus 131 LDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPi 199 (278)
.++..||.++-..+..|+=||..||---. |...||.-.+++-+.++ +.--..+-....|||-|=
T Consensus 2 ks~~ETl~~I~~~~~Sv~RFGDGE~~li~----g~~I~fQ~y~~~La~rL-keiL~~~~~~n~lVclpd 65 (265)
T TIGR03728 2 KSIDETLDYIIKNNCSVVRFGDGEIDLIA----GESIGYQSYDPELAKRL-KEILGNESDENLLVCLPD 65 (265)
T ss_pred CCHHHHHHHHHHCCCeEEEecCceeeeec----CCCCCCCCCCHHHHHHH-HHHHhcCCCCCeEEeCCc
Confidence 46789999999999999999999987662 56688888888655543 332222556788999885
No 114
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=36.33 E-value=1.3e+02 Score=30.09 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=14.0
Q ss_pred ChHHHHHHHHHHHHHHHH
Q 023717 206 SGRVIESAIQSALREARE 223 (278)
Q Consensus 206 ~~~~i~~~i~~Al~ea~~ 223 (278)
+.++++++++++..++..
T Consensus 172 ~~~eL~~a~~~~~~~~~~ 189 (472)
T PRK07178 172 SREELEQNFPRVISEATK 189 (472)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 567888888888877664
No 115
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=36.19 E-value=2.4e+02 Score=25.62 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=14.5
Q ss_pred hhHhHhhhCCeeEEeecC
Q 023717 135 RTLEYLETHGVCVAAYKT 152 (278)
Q Consensus 135 ~TLE~LET~GV~V~gy~t 152 (278)
..++.++..+||++...+
T Consensus 81 ~~~~~~~~~~ip~v~~~~ 98 (341)
T cd06341 81 SALPYLAGAGIPVIGGAG 98 (341)
T ss_pred hHHHHHhhcCCceecCCC
Confidence 345899999999998763
No 116
>PRK06101 short chain dehydrogenase; Provisional
Probab=36.13 E-value=1.5e+02 Score=25.73 Aligned_cols=94 Identities=14% Similarity=0.150 Sum_probs=46.5
Q ss_pred cEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCcceeecCCCCcc
Q 023717 88 PVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKV 167 (278)
Q Consensus 88 ~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~~~ 167 (278)
.+++|||-||+-+ .+..-|.+.+- .|++++-. +..++.+..++..+. | .
T Consensus 3 ~vlItGas~giG~------~la~~L~~~G~-~V~~~~r~-------~~~~~~~~~~~~~~~---------~--------~ 51 (240)
T PRK06101 3 AVLITGATSGIGK------QLALDYAKQGW-QVIACGRN-------QSVLDELHTQSANIF---------T--------L 51 (240)
T ss_pred EEEEEcCCcHHHH------HHHHHHHhCCC-EEEEEECC-------HHHHHHHHHhcCCCe---------E--------E
Confidence 3789999999944 45555554432 34444322 233455544331110 1 1
Q ss_pred CcccCCHHHHHHHHHHHHhcCCCCeEEEEeCC----CccCCCChHHHHHHHH
Q 023717 168 PCRVDSPEDCARLIDVNMKLKLGSGLVIGVPI----PREHAASGRVIESAIQ 215 (278)
Q Consensus 168 ~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPi----P~e~~~~~~~i~~~i~ 215 (278)
+..+.+++++.+++..-+. . + -.+|.|.- .....++.+.+++.++
T Consensus 52 ~~D~~~~~~~~~~~~~~~~-~-~-d~~i~~ag~~~~~~~~~~~~~~~~~~~~ 100 (240)
T PRK06101 52 AFDVTDHPGTKAALSQLPF-I-P-ELWIFNAGDCEYMDDGKVDATLMARVFN 100 (240)
T ss_pred EeeCCCHHHHHHHHHhccc-C-C-CEEEEcCcccccCCCCCCCHHHHHHHHH
Confidence 3455677888777664321 1 2 23444441 2223456666555443
No 117
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=35.95 E-value=3.9e+02 Score=26.29 Aligned_cols=73 Identities=15% Similarity=0.242 Sum_probs=49.3
Q ss_pred HHHHHHCCCcEEEecccccccCCCccccccc----------------cc-hhhhcCCC-eEEEeccc-ccccchhhhHhH
Q 023717 79 MFFASMVGIPVFVTGGIGGVHRHGEHTMDIS----------------SD-LTELGRTP-VAVVSAGI-KSILDIPRTLEY 139 (278)
Q Consensus 79 m~lA~~aGI~VFaTGGIGGVHrg~~~t~DiS----------------aD-L~eL~rtp-V~VVcaG~-KsILDi~~TLE~ 139 (278)
-..|+..||++|.|- |.- ...|.= -| |.+++++. .+++|.|. -++=|+...+||
T Consensus 175 ~~~~~~~Gl~~~t~v-----~d~--~~~~~l~~~vd~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~ 247 (360)
T PRK12595 175 KQVADEYGLAVISEI-----VNP--ADVEVALDYVDVIQIGARNMQNFELLKAAGRVNKPVLLKRGLSATIEEFIYAAEY 247 (360)
T ss_pred HHHHHHcCCCEEEee-----CCH--HHHHHHHHhCCeEEECcccccCHHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHH
Confidence 445788999988874 321 111111 11 34577776 67789997 799999999999
Q ss_pred hhhCCee-EEee--cCCCCcce
Q 023717 140 LETHGVC-VAAY--KTNEFPAF 158 (278)
Q Consensus 140 LET~GV~-V~gy--~t~~fPaF 158 (278)
+...|.+ ++=. ++..||.|
T Consensus 248 i~~~Gn~~i~L~erg~s~yp~~ 269 (360)
T PRK12595 248 IMSQGNGQIILCERGIRTYEKA 269 (360)
T ss_pred HHHCCCCCEEEECCccCCCCCC
Confidence 9998884 4433 46677766
No 118
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=35.68 E-value=23 Score=36.80 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=25.3
Q ss_pred CCcEEEecccccccCCCccccccccchhhhc
Q 023717 86 GIPVFVTGGIGGVHRHGEHTMDISSDLTELG 116 (278)
Q Consensus 86 GI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~ 116 (278)
.--|.||||+||++.--.+..-.+.|-..|+
T Consensus 186 ~~vVLATGG~g~ly~~TTNp~~~~GdGIamA 216 (518)
T COG0029 186 KAVVLATGGLGGLYAYTTNPKGSTGDGIAMA 216 (518)
T ss_pred CeEEEecCCCcccccccCCCccccccHHHHH
Confidence 3447899999999998877778888887765
No 119
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=35.51 E-value=1.6e+02 Score=25.88 Aligned_cols=107 Identities=16% Similarity=0.168 Sum_probs=54.8
Q ss_pred HHHCCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCcceeec
Q 023717 82 ASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTE 161 (278)
Q Consensus 82 A~~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~ 161 (278)
..+-|=.+++|||-||+.+ .+..-|.+.+-. |++++... =.+....+.+...|..+..
T Consensus 6 ~~~~~k~~lItGa~~~iG~------~ia~~l~~~G~~-vv~~~~~~---~~~~~~~~~~~~~~~~~~~------------ 63 (265)
T PRK07097 6 FSLKGKIALITGASYGIGF------AIAKAYAKAGAT-IVFNDINQ---ELVDKGLAAYRELGIEAHG------------ 63 (265)
T ss_pred cCCCCCEEEEeCCCchHHH------HHHHHHHHCCCe-EEEEeCCH---HHHHHHHHHHHhcCCceEE------------
Confidence 3455657999999999843 566666666543 44443222 1223334444443332221
Q ss_pred CCCCccCcccCCHHHHHHHHHHH-HhcCCCCeEEEEeCCCc---cCCCChHHHHHHHH
Q 023717 162 TSGSKVPCRVDSPEDCARLIDVN-MKLKLGSGLVIGVPIPR---EHAASGRVIESAIQ 215 (278)
Q Consensus 162 ~Sg~~~~~r~d~~~e~A~~~~~~-~~l~l~~g~lvanPiP~---e~~~~~~~i~~~i~ 215 (278)
+++.+.+++++-+.+..- ..++-..+++.+.-+.. -...+.+.+++.++
T Consensus 64 -----~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~ 116 (265)
T PRK07097 64 -----YVCDVTDEDGVQAMVSQIEKEVGVIDILVNNAGIIKRIPMLEMSAEDFRQVID 116 (265)
T ss_pred -----EEcCCCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHH
Confidence 245567788877777643 33443334333322211 12345666666554
No 120
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=35.47 E-value=2.3e+02 Score=25.05 Aligned_cols=87 Identities=18% Similarity=0.182 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHCCCcEEEecccccccCCCccccccccchhhhcCCCeEEEeccc--ccccchhhhHhHhhhCCeeEEee
Q 023717 73 TTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGI--KSILDIPRTLEYLETHGVCVAAY 150 (278)
Q Consensus 73 TTVaaTm~lA~~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~--KsILDi~~TLE~LET~GV~V~gy 150 (278)
.++.-.+.+|..+|.+..-|...+| ++.-..+.+..+.|| |++-|+ ++.-|-...++.+...|+-=+-+
T Consensus 143 ~~i~~~~~~a~~~GaD~Ik~~~~~~--------~~~~~~i~~~~~~pv-v~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~v 213 (235)
T cd00958 143 DLIAYAARIGAELGADIVKTKYTGD--------AESFKEVVEGCPVPV-VIAGGPKKDSEEEFLKMVYDAMEAGAAGVAV 213 (235)
T ss_pred HHHHHHHHHHHHHCCCEEEecCCCC--------HHHHHHHHhcCCCCE-EEeCCCCCCCHHHHHHHHHHHHHcCCcEEEe
Confidence 4555557778888999888876653 244455555566785 443443 23333445556667788887766
Q ss_pred cCCCCcceeecCCCCccCcccCCHHHHHHHHH
Q 023717 151 KTNEFPAFFTETSGSKVPCRVDSPEDCARLID 182 (278)
Q Consensus 151 ~t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~ 182 (278)
++.-| +-++|++.++-++
T Consensus 214 g~~i~--------------~~~dp~~~~~~~~ 231 (235)
T cd00958 214 GRNIF--------------QRPDPVAMLRAIS 231 (235)
T ss_pred chhhh--------------cCCCHHHHHHHHH
Confidence 65444 2335777666554
No 121
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=35.33 E-value=1.1e+02 Score=27.97 Aligned_cols=95 Identities=12% Similarity=0.161 Sum_probs=64.3
Q ss_pred cccchhhhHhHhhhCCeeEEeecCCCCcceeecCCCCccCcccCCHHHHHHHHHHHHhcCCCCeEEEEeCCCccC-----
Q 023717 129 SILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREH----- 203 (278)
Q Consensus 129 sILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~----- 203 (278)
+.=.+....+||..+||| |.=.-.|-|..+..+. .+++.+-.+..+.++.... .+|.++..--=-.+
T Consensus 14 ~~~~l~~i~d~l~~~~ip---f~v~vIP~~~d~~~~~--~~~l~~~~~f~~~L~~~~~---~Gg~I~lHGYtHq~~~~~s 85 (243)
T PF10096_consen 14 DLEKLKEIADYLYKYGIP---FSVAVIPVYVDPNGGI--TVNLSDNPEFVEYLRYLQA---RGGEIVLHGYTHQYGNSVS 85 (243)
T ss_pred CHHHHHHHHHHHHHCCCC---EEEEEEecccCCCCcc--cccchhhHHHHHHHHHHHh---cCCEEEEEecceecCCCcc
Confidence 344567788999999999 4444568888777766 4455555566666665443 45555544222222
Q ss_pred -------------CCChHHHHHHHHHHHHHHHHcCCCCccC
Q 023717 204 -------------AASGRVIESAIQSALREAREKNITGNAE 231 (278)
Q Consensus 204 -------------~~~~~~i~~~i~~Al~ea~~~gi~Gk~v 231 (278)
..+.+...+-|+++++...+.||.=+.+
T Consensus 86 g~~~ef~~~~~~~~~~~~~a~~ri~~gl~~l~~~gi~p~~f 126 (243)
T PF10096_consen 86 GDGFEFWDSEFDAGDSEEEAKERIEKGLEILAELGIYPVGF 126 (243)
T ss_pred cccceeccccccccCCHHHHHHHHHHHHHHHHHCCCcccEE
Confidence 3678899999999999999999964443
No 122
>PRK00758 GMP synthase subunit A; Validated
Probab=35.30 E-value=37 Score=29.14 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=25.1
Q ss_pred hhhhcCC-CeEEEecccccccchhhhHhHhhhCCeeEEeec
Q 023717 112 LTELGRT-PVAVVSAGIKSILDIPRTLEYLETHGVCVAAYK 151 (278)
Q Consensus 112 L~eL~rt-pV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~ 151 (278)
..+|.+. .-+|++-|+ ++-+.+...++|...++||+|..
T Consensus 35 ~~~l~~~~dgivi~Gg~-~~~~~~~~~~~l~~~~~PilGIC 74 (184)
T PRK00758 35 VEEIKAFEDGLILSGGP-DIERAGNCPEYLKELDVPILGIC 74 (184)
T ss_pred HHHHhhcCCEEEECCCC-ChhhccccHHHHHhCCCCEEEEe
Confidence 3344444 666666666 55555666677777788888764
No 123
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=35.22 E-value=1.7e+02 Score=26.21 Aligned_cols=92 Identities=13% Similarity=0.141 Sum_probs=49.8
Q ss_pred cchhhhHhHhhhCCeeEEee--cCCCCcceeecCCCCc-cCccc-CCHHHHHHHHHHHHhcCCCCeEEEEeC--CCccCC
Q 023717 131 LDIPRTLEYLETHGVCVAAY--KTNEFPAFFTETSGSK-VPCRV-DSPEDCARLIDVNMKLKLGSGLVIGVP--IPREHA 204 (278)
Q Consensus 131 LDi~~TLE~LET~GV~V~gy--~t~~fPaFy~~~Sg~~-~~~r~-d~~~e~A~~~~~~~~l~l~~g~lvanP--iP~e~~ 204 (278)
+|+....+.|+.+|+.|..+ ...++. ....+.. .|.+- ...+.+.+.++....||-+ .|...+ .|....
T Consensus 40 ~~~~~~~~~l~~~gl~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lga~--~i~~~~g~~~~~~~ 114 (258)
T PRK09997 40 YDIEELKQVLASNKLEHTLHNLPAGDWA---AGERGIACIPGREEEFRDGVAAAIRYARALGNK--KINCLVGKTPAGFS 114 (258)
T ss_pred CCHHHHHHHHHHcCCcEEEEcCCCCccc---cCcCccccCCCcHHHHHHHHHHHHHHHHHhCCC--EEEECCCCCCCCCC
Confidence 57889999999999999864 232221 1111100 11111 1124567788888888765 333322 333222
Q ss_pred CC--hHHHHHHHHHHHHHHHHcCCC
Q 023717 205 AS--GRVIESAIQSALREAREKNIT 227 (278)
Q Consensus 205 ~~--~~~i~~~i~~Al~ea~~~gi~ 227 (278)
-+ .+.+.+.+.++...|++.||+
T Consensus 115 ~~~~~~~~~~~l~~l~~~a~~~Gv~ 139 (258)
T PRK09997 115 SEQIHATLVENLRYAANMLMKEDIL 139 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 11 133445567777777888884
No 124
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=35.12 E-value=1e+02 Score=28.42 Aligned_cols=47 Identities=11% Similarity=0.137 Sum_probs=26.9
Q ss_pred hhcCCCeEEEecccccccchhhhHhHhhhCC--eeEEeecCCCCcceeecCCCC
Q 023717 114 ELGRTPVAVVSAGIKSILDIPRTLEYLETHG--VCVAAYKTNEFPAFFTETSGS 165 (278)
Q Consensus 114 eL~rtpV~VVcaG~KsILDi~~TLE~LET~G--V~V~gy~t~~fPaFy~~~Sg~ 165 (278)
.+.+.|..++..|... ....++.++ .| |.+.||. ++++.||....-+
T Consensus 208 ~~~~~~~~~~~~G~g~---~~~~~~~~~-~~~~v~~~g~~-~~~~~~~~~~d~~ 256 (357)
T PRK00726 208 LLPEALQVIHQTGKGD---LEEVRAAYA-AGINAEVVPFI-DDMAAAYAAADLV 256 (357)
T ss_pred HhhhCcEEEEEcCCCc---HHHHHHHhh-cCCcEEEeehH-hhHHHHHHhCCEE
Confidence 3444455556666654 244455555 56 6777886 5666666555443
No 125
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=34.90 E-value=45 Score=26.80 Aligned_cols=32 Identities=25% Similarity=0.496 Sum_probs=26.0
Q ss_pred eEEEecccccccchhhhHhHhhhCCeeEEeec
Q 023717 120 VAVVSAGIKSILDIPRTLEYLETHGVCVAAYK 151 (278)
Q Consensus 120 V~VVcaG~KsILDi~~TLE~LET~GV~V~gy~ 151 (278)
++||.+|.+...=-|...+||+.+|+.|---.
T Consensus 56 ~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~ 87 (110)
T PF04430_consen 56 VLIIGTGKRQLFLPPELREYLRKKGIGVEVMD 87 (110)
T ss_dssp EEEEEETTS-SECTHHHHHHHHTTT-EEEEE-
T ss_pred EEEEccCCccccCCHHHHHHHHHcCCeEEEEC
Confidence 99999999988888999999999999886544
No 126
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=34.60 E-value=1.6e+02 Score=26.12 Aligned_cols=29 Identities=14% Similarity=0.040 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHCCCcEEEecccccccCCC
Q 023717 74 TVSATMFFASMVGIPVFVTGGIGGVHRHG 102 (278)
Q Consensus 74 TVaaTm~lA~~aGI~VFaTGGIGGVHrg~ 102 (278)
-+..-..+|+..|+++|+.--.-|+|-+.
T Consensus 110 ~i~~v~~~~~~~g~~~iie~~~~g~~~~~ 138 (235)
T cd00958 110 ELARVAAEAHKYGLPLIAWMYPRGPAVKN 138 (235)
T ss_pred HHHHHHHHHHHcCCCEEEEEeccCCcccC
Confidence 45566667788888888765566777764
No 127
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=34.55 E-value=3.6e+02 Score=24.60 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHCCCcEEEecccccccC-----CCcccc-----ccccchhhhcCCCeEEEecccccccchhhhHhHhhh
Q 023717 73 TTVSATMFFASMVGIPVFVTGGIGGVHR-----HGEHTM-----DISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLET 142 (278)
Q Consensus 73 TTVaaTm~lA~~aGI~VFaTGGIGGVHr-----g~~~t~-----DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET 142 (278)
..-.++..+|+..|++|++|..-.--.. |+...+ |....+.++....+++-|+|... -+...+..|..
T Consensus 174 ~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~~g~~~--~~~~~~~~l~~ 251 (333)
T cd08296 174 GLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAKLILATAPNAK--AISALVGGLAP 251 (333)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhcCCCCEEEECCCchH--HHHHHHHHccc
Confidence 4445668899999999999976420000 111222 33333455544567776766333 23445667777
Q ss_pred CCeeE
Q 023717 143 HGVCV 147 (278)
Q Consensus 143 ~GV~V 147 (278)
.|.-|
T Consensus 252 ~G~~v 256 (333)
T cd08296 252 RGKLL 256 (333)
T ss_pred CCEEE
Confidence 77544
No 128
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=34.38 E-value=2.5e+02 Score=24.86 Aligned_cols=18 Identities=33% Similarity=0.597 Sum_probs=9.8
Q ss_pred HHHHHHCCCcEEEecccc
Q 023717 79 MFFASMVGIPVFVTGGIG 96 (278)
Q Consensus 79 m~lA~~aGI~VFaTGGIG 96 (278)
-.++....|||++.|||.
T Consensus 186 ~~i~~~~~iPvia~GGI~ 203 (241)
T PRK13585 186 KELVDSVDIPVIASGGVT 203 (241)
T ss_pred HHHHHhCCCCEEEeCCCC
Confidence 344445556666665554
No 129
>PRK10494 hypothetical protein; Provisional
Probab=34.25 E-value=79 Score=29.42 Aligned_cols=77 Identities=14% Similarity=0.363 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHC-CCcEEEecccccccCCCc--------cccccccc----------hh--------hhcCCCeEEEecc
Q 023717 74 TVSATMFFASMV-GIPVFVTGGIGGVHRHGE--------HTMDISSD----------LT--------ELGRTPVAVVSAG 126 (278)
Q Consensus 74 TVaaTm~lA~~a-GI~VFaTGGIGGVHrg~~--------~t~DiSaD----------L~--------eL~rtpV~VVcaG 126 (278)
-+-.++.+.+.- +-++.+|||-|.-+.-.| ..+-|++| -. .++..++++|++.
T Consensus 108 Rl~~a~~L~r~~~~~~ii~SGg~~~~~~~sEA~~~~~~l~~lGVp~~~Ii~e~~s~nT~eNa~~~~~~~~~~~iiLVTsa 187 (259)
T PRK10494 108 RLTEGIRLWRANPGAKLIFTGGAAKTNTVSTAEVGARVAQSLGVPREDIITLDLPKDTEEEAAAVKQAIGDAPFLLVTSA 187 (259)
T ss_pred HHHHHHHHHHhCCCCEEEEECCCCCCCCCCHHHHHHHHHHHcCCCHHHeeeCCCCCCHHHHHHHHHHHhCCCCEEEECCH
Confidence 344556666663 678899998773321000 01122222 11 2556679999876
Q ss_pred cccccchhhhHhHhhhCCeeEEeecCCC
Q 023717 127 IKSILDIPRTLEYLETHGVCVAAYKTNE 154 (278)
Q Consensus 127 ~KsILDi~~TLE~LET~GV~V~gy~t~~ 154 (278)
.-++|.+.+++.+|+.|+-+-||.
T Consensus 188 ----~Hm~RA~~~f~~~Gl~v~p~Ptd~ 211 (259)
T PRK10494 188 ----SHLPRAMIFFQQEGLNPLPAPANQ 211 (259)
T ss_pred ----HHHHHHHHHHHHcCCceeecCCcc
Confidence 478999999999999999888764
No 130
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=33.99 E-value=79 Score=24.84 Aligned_cols=70 Identities=24% Similarity=0.282 Sum_probs=49.2
Q ss_pred cCCCchhhHHHHHHHHHH-C-CCcEEEe----------------cccccccCCCccccccccchhhhcCCCeEEEecccc
Q 023717 67 TRGNGATTVSATMFFASM-V-GIPVFVT----------------GGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIK 128 (278)
Q Consensus 67 ~~~~GaTTVaaTm~lA~~-a-GI~VFaT----------------GGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~K 128 (278)
||..|-||++..+..+-. . |.+|..- +|++ .....+...+..=++|+.....
T Consensus 8 kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~~D~IIiDtpp~~~----------~~~~~~l~~aD~vlvvv~~~~~ 77 (106)
T cd03111 8 KGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGDDYVVVDLGRSLD----------EVSLAALDQADRVFLVTQQDLP 77 (106)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCCCCEEEEeCCCCcC----------HHHHHHHHHcCeEEEEecCChH
Confidence 677888888877665544 4 7766543 1111 1123455566666888889999
Q ss_pred cccchhhhHhHhhhCCee
Q 023717 129 SILDIPRTLEYLETHGVC 146 (278)
Q Consensus 129 sILDi~~TLE~LET~GV~ 146 (278)
|+-+..+.+++|+..+.+
T Consensus 78 s~~~~~~~~~~l~~~~~~ 95 (106)
T cd03111 78 SIRNAKRLLELLRVLDYS 95 (106)
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 999999999999998865
No 131
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=33.83 E-value=2.7e+02 Score=28.24 Aligned_cols=144 Identities=19% Similarity=0.162 Sum_probs=80.6
Q ss_pred HCCCcEEEecccccccCCC-----ccccccc---------cch--hhhcCCCeEEEecccccccchhhhHhHhhhCCeeE
Q 023717 84 MVGIPVFVTGGIGGVHRHG-----EHTMDIS---------SDL--TELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 147 (278)
Q Consensus 84 ~aGI~VFaTGGIGGVHrg~-----~~t~DiS---------aDL--~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V 147 (278)
.--..|||+|+-|+|-|-- +..|++= .|+ .....--..+||.=.-.=.|+...+=-=-.+++.+
T Consensus 77 ~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~~~~~d~~~~~v~~~~~~~~d~~~~~~~~~~~~~~~ 156 (411)
T KOG1203|consen 77 KKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLGVFFVDLGLQNVEADVVTAIDILKKLVEAVPKGVVI 156 (411)
T ss_pred CCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhcccccccccceeeeccccccchhhhhhhhcccccee
Confidence 3456799999999997610 0012211 122 01112223334433333356666655555667888
Q ss_pred EeecCCCCcceeecCCCCccCcccCCHHHHHHHHHHHHhcCCCCeEEE-------EeCCCccCCCChHHHHHHHHHHHHH
Q 023717 148 AAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVI-------GVPIPREHAASGRVIESAIQSALRE 220 (278)
Q Consensus 148 ~gy~t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lv-------anPiP~e~~~~~~~i~~~i~~Al~e 220 (278)
+.-+....|.|- ....|+.+| .+-.=.++.+....|+...+|| .|+.|.-.-. -..+..+=..+.++
T Consensus 157 v~~~~ggrp~~e----d~~~p~~VD-~~g~knlvdA~~~aGvk~~vlv~si~~~~~~~~~~~~~~-~~~~~~~k~~~e~~ 230 (411)
T KOG1203|consen 157 VIKGAGGRPEEE----DIVTPEKVD-YEGTKNLVDACKKAGVKRVVLVGSIGGTKFNQPPNILLL-NGLVLKAKLKAEKF 230 (411)
T ss_pred EEecccCCCCcc----cCCCcceec-HHHHHHHHHHHHHhCCceEEEEEeecCcccCCCchhhhh-hhhhhHHHHhHHHH
Confidence 888888888887 445677776 4566778888899999999998 2333322111 11222222334445
Q ss_pred HHHcCCCCccCCh
Q 023717 221 AREKNITGNAETP 233 (278)
Q Consensus 221 a~~~gi~Gk~vTP 233 (278)
.++.|+..--+.|
T Consensus 231 ~~~Sgl~ytiIR~ 243 (411)
T KOG1203|consen 231 LQDSGLPYTIIRP 243 (411)
T ss_pred HHhcCCCcEEEec
Confidence 5567776554444
No 132
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=33.73 E-value=39 Score=26.39 Aligned_cols=70 Identities=20% Similarity=0.288 Sum_probs=46.3
Q ss_pred HHHHHHHHCCCcEEEecccccccC-----CCccccccc-----cchhhhcC---CCeEEEecccccccchhhhHhHhhhC
Q 023717 77 ATMFFASMVGIPVFVTGGIGGVHR-----HGEHTMDIS-----SDLTELGR---TPVAVVSAGIKSILDIPRTLEYLETH 143 (278)
Q Consensus 77 aTm~lA~~aGI~VFaTGGIGGVHr-----g~~~t~DiS-----aDL~eL~r---tpV~VVcaG~KsILDi~~TLE~LET~ 143 (278)
.+..+|+..|.+|++|..--.=+. |+...+|.+ ..+.++.. ..+++-|+|.... +...++.|.-.
T Consensus 5 ~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~--~~~~~~~l~~~ 82 (130)
T PF00107_consen 5 MAIQLAKAMGAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGDT--LQEAIKLLRPG 82 (130)
T ss_dssp HHHHHHHHTTSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSSHHH--HHHHHHHEEEE
T ss_pred HHHHHHHHcCCEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCcHHH--HHHHHHHhccC
Confidence 457889999999999986321110 444444444 45666654 5588899995553 56777888888
Q ss_pred CeeEE
Q 023717 144 GVCVA 148 (278)
Q Consensus 144 GV~V~ 148 (278)
|.-|+
T Consensus 83 G~~v~ 87 (130)
T PF00107_consen 83 GRIVV 87 (130)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 86554
No 133
>PF14246 TetR_C_7: AefR-like transcriptional repressor, C-terminal region; PDB: 3BHQ_B 3CDL_A.
Probab=33.70 E-value=16 Score=25.22 Aligned_cols=46 Identities=30% Similarity=0.325 Sum_probs=26.7
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCeEEEEeCCCccCCCChHHHHHHHHHHHH
Q 023717 170 RVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALR 219 (278)
Q Consensus 170 r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~~~i~~~i~~Al~ 219 (278)
+++||+.+|+.+.....=..--..++..+.| .+.+++++++++|+.
T Consensus 4 ~~~Dp~~AA~qf~~l~~g~~~~~~llg~~~~----~s~~e~~~~v~~aV~ 49 (55)
T PF14246_consen 4 RIDDPELAAEQFLGLLKGDLFWPALLGLAPP----PSAEEIERIVESAVD 49 (55)
T ss_dssp -SSSHHHHHHHHHHHHHHHHCHHHHHHTS--------HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhHHHHHHHhCCCCC----cCHHHHHHHHHHHHH
Confidence 6789999999877543322222223333322 347888999998875
No 134
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=33.47 E-value=23 Score=26.41 Aligned_cols=65 Identities=15% Similarity=0.186 Sum_probs=44.8
Q ss_pred hhHhHhhhCCeeEEeecCCCCcceeecCCCCccCcccCCHHHHHHHHHHHHhcCCCCeEEEEeCCCccCCCChHHHHHHH
Q 023717 135 RTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAI 214 (278)
Q Consensus 135 ~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~~~i~~~i 214 (278)
+.+|++ ..|+||++..+..++.||..+..+ ..++|++|++..+..- + -++++.+++-
T Consensus 14 r~~E~~-a~G~~vi~~~~~~~~~~~~~~~~~---~~~~~~~el~~~i~~l----------l---------~~~~~~~~ia 70 (92)
T PF13524_consen 14 RIFEAM-ACGTPVISDDSPGLREIFEDGEHI---ITYNDPEELAEKIEYL----------L---------ENPEERRRIA 70 (92)
T ss_pred HHHHHH-HCCCeEEECChHHHHHHcCCCCeE---EEECCHHHHHHHHHHH----------H---------CCHHHHHHHH
Confidence 566666 479999999999999998665322 2234899988877652 1 2456667777
Q ss_pred HHHHHHHH
Q 023717 215 QSALREAR 222 (278)
Q Consensus 215 ~~Al~ea~ 222 (278)
++|.+..+
T Consensus 71 ~~a~~~v~ 78 (92)
T PF13524_consen 71 KNARERVL 78 (92)
T ss_pred HHHHHHHH
Confidence 77776654
No 135
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=33.42 E-value=42 Score=28.51 Aligned_cols=75 Identities=21% Similarity=0.287 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHCCCcccEEEEEcCceeecCCHHHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHHHHHHHHCCCc
Q 023717 9 TAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIP 88 (278)
Q Consensus 9 ~A~~~E~~vR~~GavPATIaii~G~i~VGl~~~el~~la~~~~~~~K~srRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~ 88 (278)
....+++ +|+.|. .|++ | .+|.....++.|.....+.+|++++-+.... ...--..+.+-+.+|+..||+
T Consensus 136 ~~~~l~~-l~~~G~---~i~l-d---~~g~~~~~~~~l~~l~~~~ikld~~~~~~~~--~~~~~~~l~~l~~~~~~~~~~ 205 (236)
T PF00563_consen 136 LLENLRR-LRSLGF---RIAL-D---DFGSGSSSLEYLASLPPDYIKLDGSLVRDLS--DEEAQSLLQSLINLAKSLGIK 205 (236)
T ss_dssp HHHHHHH-HHHCT----EEEE-E---EETSTCGCHHHHHHHCGSEEEEEHHGHTTTT--SHHHHHHHHHHHHHHHHTT-E
T ss_pred HHHHHHH-HHhcCc---eeEe-e---eccCCcchhhhhhhcccccceeecccccccc--hhhHHHHHHHHHHHhhccccc
Confidence 3355555 788886 4554 3 2577777777776655568888887652211 233445566778899999999
Q ss_pred EEEec
Q 023717 89 VFVTG 93 (278)
Q Consensus 89 VFaTG 93 (278)
|.|+|
T Consensus 206 via~g 210 (236)
T PF00563_consen 206 VIAEG 210 (236)
T ss_dssp EEEEC
T ss_pred cceee
Confidence 99986
No 136
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=33.22 E-value=3.1e+02 Score=25.79 Aligned_cols=72 Identities=8% Similarity=0.077 Sum_probs=41.1
Q ss_pred HHHHHHHHCCCcEEEeccccccc------CCCccccccc--cchhhhc-CCCeEEEecccccccchhhhHhHhhhCCeeE
Q 023717 77 ATMFFASMVGIPVFVTGGIGGVH------RHGEHTMDIS--SDLTELG-RTPVAVVSAGIKSILDIPRTLEYLETHGVCV 147 (278)
Q Consensus 77 aTm~lA~~aGI~VFaTGGIGGVH------rg~~~t~DiS--aDL~eL~-rtpV~VVcaG~KsILDi~~TLE~LET~GV~V 147 (278)
.++.+|+..|++|+++..----. .|+...+|.. .++.++. ...+++=|+|... .+...++.|...|.-|
T Consensus 198 ~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~~~--~~~~~~~~l~~~G~iv 275 (360)
T PLN02586 198 VAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSAVH--ALGPLLGLLKVNGKLI 275 (360)
T ss_pred HHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCCHH--HHHHHHHHhcCCcEEE
Confidence 56778889999988875432110 1333333322 1333332 2467777888432 3456788888888755
Q ss_pred -Eee
Q 023717 148 -AAY 150 (278)
Q Consensus 148 -~gy 150 (278)
+|.
T Consensus 276 ~vG~ 279 (360)
T PLN02586 276 TLGL 279 (360)
T ss_pred EeCC
Confidence 443
No 137
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=33.02 E-value=1.2e+02 Score=29.95 Aligned_cols=110 Identities=16% Similarity=0.253 Sum_probs=63.8
Q ss_pred HHHHHHHHHCCCcEEEeccccc-ccCCCcccccccc---------------------chhhhc--CCC-------eEE-E
Q 023717 76 SATMFFASMVGIPVFVTGGIGG-VHRHGEHTMDISS---------------------DLTELG--RTP-------VAV-V 123 (278)
Q Consensus 76 aaTm~lA~~aGI~VFaTGGIGG-VHrg~~~t~DiSa---------------------DL~eL~--rtp-------V~V-V 123 (278)
+.+..++..+||++..+|--.| |--|.++|..|+= ||.-++ .+| .-+ -
T Consensus 45 ~~sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~nA~rl~~ 124 (332)
T PLN02424 45 YPSAVHVDSAGIDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVESAVRMLK 124 (332)
T ss_pred HHHHHHHHHcCCCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4567889999999999998776 2334444443332 222220 111 001 1
Q ss_pred ecccccc------cchhhhHhHhhhCCeeEEeecCCCCcceeecCCCCccCcccCCHHHHHHHHHHHHhcC
Q 023717 124 SAGIKSI------LDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLK 188 (278)
Q Consensus 124 caG~KsI------LDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~ 188 (278)
-+|+..| -+.-.+++.|-..||||+|- -.--|-....-.||++..+ +.+++.++++.-..|.
T Consensus 125 eaGa~aVKlEGg~~~~~~~I~~l~~~GIPV~gH-iGLtPQs~~~lGGykvqGr--~~~~a~~li~dA~ale 192 (332)
T PLN02424 125 EGGMDAVKLEGGSPSRVTAAKAIVEAGIAVMGH-VGLTPQAISVLGGFRPQGR--TAESAVKVVETALALQ 192 (332)
T ss_pred HhCCcEEEECCCcHHHHHHHHHHHHcCCCEEEe-ecccceeehhhcCccccCC--CHHHHHHHHHHHHHHH
Confidence 1333222 12346788888999999964 1122555555578888764 4557777777666664
No 138
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=32.92 E-value=2.2e+02 Score=26.84 Aligned_cols=85 Identities=16% Similarity=0.169 Sum_probs=46.6
Q ss_pred HHHHHHHHHHCCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCC
Q 023717 75 VSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNE 154 (278)
Q Consensus 75 VaaTm~lA~~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~ 154 (278)
.--|+..|+.+||+|- +|+|=| | | |+ + =|+-.++++|...++-..+|. .-
T Consensus 183 ~l~~i~~a~~~Gi~v~-~~~iiG-l-g-Et-~------------------------ed~~~~l~~l~~l~~~~~~~~-~f 232 (340)
T TIGR03699 183 WLEVMETAHKLGLPTT-ATMMFG-H-V-ET-L------------------------EDRIEHLERIRELQDKTGGFT-AF 232 (340)
T ss_pred HHHHHHHHHHcCCCcc-ceeEee-C-C-CC-H------------------------HHHHHHHHHHHHhchhhCCee-EE
Confidence 4578889999999864 555544 3 3 21 1 123345667766666555543 11
Q ss_pred Ccceeec-CCCCccCcccCCHHHHHHHHHHHHhcCCCC
Q 023717 155 FPAFFTE-TSGSKVPCRVDSPEDCARLIDVNMKLKLGS 191 (278)
Q Consensus 155 fPaFy~~-~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~ 191 (278)
.|--|.+ .+.+.- ...-+++|..+++...+-+ +|.
T Consensus 233 IP~~f~p~~tpl~~-~~~~~~~e~l~~iA~~Rl~-lp~ 268 (340)
T TIGR03699 233 IPWTFQPGNTELGK-KRPATSTEYLKVLAISRIF-LDN 268 (340)
T ss_pred EeecccCCCCcccC-CCCCCHHHHHHHHHHHHHc-CCC
Confidence 2322222 333221 1234788999988876665 354
No 139
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=32.64 E-value=58 Score=29.49 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=10.1
Q ss_pred cchhhhHhHhhhCCeeE
Q 023717 131 LDIPRTLEYLETHGVCV 147 (278)
Q Consensus 131 LDi~~TLE~LET~GV~V 147 (278)
+++..-+++|..+|++|
T Consensus 235 ~~~~~~~~~~~~~~~~~ 251 (253)
T PRK02083 235 ITIGELKAYLAEQGIPV 251 (253)
T ss_pred CCHHHHHHHHHHCCCcc
Confidence 45555566666666665
No 140
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=32.40 E-value=3.7e+02 Score=25.19 Aligned_cols=70 Identities=17% Similarity=0.123 Sum_probs=39.7
Q ss_pred HHHHHHHHHCCC-cEEEecccccc-----cCCCccccccc-----cchhhhc--CCCeEEEecccccccchhhhHhHhhh
Q 023717 76 SATMFFASMVGI-PVFVTGGIGGV-----HRHGEHTMDIS-----SDLTELG--RTPVAVVSAGIKSILDIPRTLEYLET 142 (278)
Q Consensus 76 aaTm~lA~~aGI-~VFaTGGIGGV-----Hrg~~~t~DiS-----aDL~eL~--rtpV~VVcaG~KsILDi~~TLE~LET 142 (278)
..++.+|+..|. +|++|..---- .-|+...+|.. ..+.++. ...+++=|+|..+. +...++.|..
T Consensus 205 ~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~~~~--~~~~~~~l~~ 282 (371)
T cd08281 205 LSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGSVPA--LETAYEITRR 282 (371)
T ss_pred HHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCChHH--HHHHHHHHhc
Confidence 355778899999 59988641100 00333344432 2334443 24577778886543 3456788888
Q ss_pred CCeeE
Q 023717 143 HGVCV 147 (278)
Q Consensus 143 ~GV~V 147 (278)
.|.-|
T Consensus 283 ~G~iv 287 (371)
T cd08281 283 GGTTV 287 (371)
T ss_pred CCEEE
Confidence 88544
No 141
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=32.37 E-value=1.5e+02 Score=22.89 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=18.8
Q ss_pred CCCeEEEe-cccccccchhhhHhHhhhCCee
Q 023717 117 RTPVAVVS-AGIKSILDIPRTLEYLETHGVC 146 (278)
Q Consensus 117 rtpV~VVc-aG~KsILDi~~TLE~LET~GV~ 146 (278)
..||+|+| +|..| ......|..+|.+
T Consensus 66 ~~~ivv~C~~G~rs----~~a~~~L~~~G~~ 92 (109)
T cd01533 66 RTPIVVNCAGRTRS----IIGAQSLINAGLP 92 (109)
T ss_pred CCeEEEECCCCchH----HHHHHHHHHCCCC
Confidence 46899999 55544 3456788888885
No 142
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=32.34 E-value=1.3e+02 Score=25.96 Aligned_cols=82 Identities=21% Similarity=0.257 Sum_probs=42.6
Q ss_pred cEEEecccccccCCCccccccccchhhhcCCCeEEEec-ccccccchhhhHhHhhhCCeeEEeecCCCCcceeecCCCCc
Q 023717 88 PVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSA-GIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSK 166 (278)
Q Consensus 88 ~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVca-G~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~~ 166 (278)
.+++|||-||+.+ .+..-|.+.+- .|++++. ..+. ....++.++..+.++..+
T Consensus 4 ~vlItG~sg~iG~------~la~~L~~~g~-~vi~~~r~~~~~---~~~~~~~~~~~~~~~~~~---------------- 57 (256)
T PRK12745 4 VALVTGGRRGIGL------GIARALAAAGF-DLAINDRPDDEE---LAATQQELRALGVEVIFF---------------- 57 (256)
T ss_pred EEEEeCCCchHHH------HHHHHHHHCCC-EEEEEecCchhH---HHHHHHHHHhcCCceEEE----------------
Confidence 4899999999944 45555554432 3443332 2222 334455665544332221
Q ss_pred cCcccCCHHHHHHHHHHHHh-cCCCCeEEEEe
Q 023717 167 VPCRVDSPEDCARLIDVNMK-LKLGSGLVIGV 197 (278)
Q Consensus 167 ~~~r~d~~~e~A~~~~~~~~-l~l~~g~lvan 197 (278)
+.-+.+++++.+++..-++ ++-.. ++|.|
T Consensus 58 -~~D~~~~~~~~~~~~~~~~~~~~id-~vi~~ 87 (256)
T PRK12745 58 -PADVADLSAHEAMLDAAQAAWGRID-CLVNN 87 (256)
T ss_pred -EecCCCHHHHHHHHHHHHHhcCCCC-EEEEC
Confidence 2345577787777765543 33233 44554
No 143
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=32.32 E-value=41 Score=31.14 Aligned_cols=88 Identities=19% Similarity=0.223 Sum_probs=58.9
Q ss_pred HHHHhcCCCchhhHHHHHHHHHH----CCCcEEEecccccccCCCccccccccchhhhcCCCeEEEec-ccccccchhhh
Q 023717 62 AHVVATRGNGATTVSATMFFASM----VGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSA-GIKSILDIPRT 136 (278)
Q Consensus 62 ~~~~a~~~~GaTTVaaTm~lA~~----aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVca-G~KsILDi~~T 136 (278)
+-.+|.+..|-+ +--.-+..++ .--+.+..=|-||+.-==.+.+. =+|+...=+-||++|+. .-=+|=+-=.|
T Consensus 79 sPhlAa~~eg~~-I~~~~l~~~l~~l~~~~d~vlVEGAGGl~vPl~~~~~-~~D~~~~~~lpvILV~~~~LGtINHtlLt 156 (223)
T COG0132 79 SPHLAAELEGRT-IDLEKLSQGLRQLLKKYDLVLVEGAGGLLVPLTEEYT-FADLAVQLQLPVILVVGIKLGTINHTLLT 156 (223)
T ss_pred CcHHHHhhcCCc-ccHHHHHHHHHhhhcccCEEEEeCCCceeeecCCccc-HHHHHHHcCCCEEEEecCCccHHHHHHHH
Confidence 344455555433 6555555543 23346778889998653222322 35888888899877654 44578888899
Q ss_pred HhHhhhCCeeEEeec
Q 023717 137 LEYLETHGVCVAAYK 151 (278)
Q Consensus 137 LE~LET~GV~V~gy~ 151 (278)
+|+|...|+|+.|+=
T Consensus 157 ~eal~~~gl~l~G~I 171 (223)
T COG0132 157 VEALRARGLPLAGWV 171 (223)
T ss_pred HHHHHHCCCCEEEEE
Confidence 999999999999995
No 144
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=32.30 E-value=29 Score=35.45 Aligned_cols=69 Identities=28% Similarity=0.400 Sum_probs=38.7
Q ss_pred eEEEecccccccchhhhH-hHhhhCCeeEEeecCCCCcceeecCCCCccCcccCCHHHHHHHHHHH-HhcCCCCeEEEE
Q 023717 120 VAVVSAGIKSILDIPRTL-EYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVN-MKLKLGSGLVIG 196 (278)
Q Consensus 120 V~VVcaG~KsILDi~~TL-E~LET~GV~V~gy~t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~-~~l~l~~g~lva 196 (278)
++|.-||---==||.+-+ |.|..+||||||..+ +-=||+.+++-.+ ..+.+++|+.- ++.+-..-+||.
T Consensus 262 ~av~~SGDGGWr~lDk~v~~~l~~~gvpVvGvds--LRYfW~~rtPe~~------a~Dl~r~i~~y~~~w~~~~~~liG 332 (456)
T COG3946 262 VAVFYSGDGGWRDLDKEVAEALQKQGVPVVGVDS--LRYFWSERTPEQI------AADLSRLIRFYARRWGAKRVLLIG 332 (456)
T ss_pred EEEEEecCCchhhhhHHHHHHHHHCCCceeeeeh--hhhhhccCCHHHH------HHHHHHHHHHHHHhhCcceEEEEe
Confidence 344444444444666554 899999999999874 3447766654322 22334444422 224445666664
No 145
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=32.27 E-value=3.1e+02 Score=25.86 Aligned_cols=72 Identities=14% Similarity=0.104 Sum_probs=44.8
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCeEEEEeCCCccCCCCh----------HHHHHHHHHHHHHHHHcC----CCCccCChHH
Q 023717 170 RVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASG----------RVIESAIQSALREAREKN----ITGNAETPFL 235 (278)
Q Consensus 170 r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~----------~~i~~~i~~Al~ea~~~g----i~Gk~vTPfl 235 (278)
+.-+++|+.+.++.-.++|...-++..--.|. +..+. ..+-+.|++..+...+.| ++...+|+=.
T Consensus 39 ~~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~-~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~~g~~~~~~~~~lt~e~ 117 (336)
T PRK06245 39 SLLSPEEVKEILRRGADAGCTEALFTFGEVPD-ESYERIKEQLAEMGYSSILEYLYDLCELALEEGLLPHTNAGILTREE 117 (336)
T ss_pred CcCCHHHHHHHHHHHHHCCCCEEEEecCCCCc-cchhhhhhhhhhhhHHHHHHHHHHHHHHHhhcCCCccccCCCCCHHH
Confidence 46789999999999899998884444322222 22221 334445544444444333 4577888888
Q ss_pred HHHHHHH
Q 023717 236 LARVNEL 242 (278)
Q Consensus 236 L~~i~el 242 (278)
+.++.+.
T Consensus 118 i~~Lk~a 124 (336)
T PRK06245 118 MEKLKEV 124 (336)
T ss_pred HHHHHHh
Confidence 8888886
No 146
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=32.20 E-value=47 Score=31.89 Aligned_cols=76 Identities=22% Similarity=0.263 Sum_probs=53.3
Q ss_pred EEEecccccccchhhhHhHhhhCCeeEEeecCCCCcceeecCCCCccCcccCCHHHHHHHHHHHHhcCCCCe-EEEEeCC
Q 023717 121 AVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSG-LVIGVPI 199 (278)
Q Consensus 121 ~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g-~lvanPi 199 (278)
+|=|.|-+ ++-.|+++|-..||||+|- -.--|.....--||++..|= .+++.++++.-.+|.=-+. .++.--|
T Consensus 110 aVKlEGG~---~~~~~i~~L~~~gIPV~gH-iGLtPQ~v~~~GGykvqGr~--~~~a~~l~~dA~ale~AGaf~ivlE~V 183 (268)
T COG0413 110 AVKLEGGE---EMAETIKRLTERGIPVMGH-IGLTPQSVNWLGGYKVQGRT--EESAEKLLEDAKALEEAGAFALVLECV 183 (268)
T ss_pred EEEEcCCH---HHHHHHHHHHHcCCceEEE-ecCChhhhhccCCeeeecCC--HHHHHHHHHHHHHHHhcCceEEEEecc
Confidence 44455553 4556899999999999985 33558888999999998875 4788888887777653333 3444445
Q ss_pred Ccc
Q 023717 200 PRE 202 (278)
Q Consensus 200 P~e 202 (278)
|++
T Consensus 184 p~~ 186 (268)
T COG0413 184 PAE 186 (268)
T ss_pred HHH
Confidence 554
No 147
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=32.17 E-value=4.3e+02 Score=24.80 Aligned_cols=72 Identities=17% Similarity=0.199 Sum_probs=44.5
Q ss_pred HHHHHHHHCCCcEEEec-ccccccCCCccccccccchh--------hhcCCCeEEEecccccccc-----hhhhHhHhhh
Q 023717 77 ATMFFASMVGIPVFVTG-GIGGVHRHGEHTMDISSDLT--------ELGRTPVAVVSAGIKSILD-----IPRTLEYLET 142 (278)
Q Consensus 77 aTm~lA~~aGI~VFaTG-GIGGVHrg~~~t~DiSaDL~--------eL~rtpV~VVcaG~KsILD-----i~~TLE~LET 142 (278)
.+..++..+|++...|| +++-+..|-..+--+|-|-. .=...|++++-.+--+..+ +..|...++.
T Consensus 23 ~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~a~r~~~~ 102 (254)
T cd06557 23 PTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRNAARLMKE 102 (254)
T ss_pred HHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHHHHHHHHH
Confidence 45678899999999998 55656566555443333221 1223465555565566666 6667777776
Q ss_pred CCeeEE
Q 023717 143 HGVCVA 148 (278)
Q Consensus 143 ~GV~V~ 148 (278)
.|+--+
T Consensus 103 aGa~aV 108 (254)
T cd06557 103 AGADAV 108 (254)
T ss_pred hCCeEE
Confidence 665443
No 148
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=32.17 E-value=35 Score=30.89 Aligned_cols=95 Identities=25% Similarity=0.372 Sum_probs=56.5
Q ss_pred HHHHHHHHCCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhH----hHhhhCCeeEEeecC
Q 023717 77 ATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTL----EYLETHGVCVAAYKT 152 (278)
Q Consensus 77 aTm~lA~~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TL----E~LET~GV~V~gy~t 152 (278)
.|-..++..||+||.|=|.|=|+ |+.-=|.+|+. |+.||+|=- -+|+ |..+ ++.-+-.||.+.+.+
T Consensus 54 ~t~~~~~~~gv~vi~tpG~GYv~-------Dl~~al~~l~~-P~lvvsaDL-p~l~-~~~i~~vi~~~~~~~~p~~~~~~ 123 (177)
T COG2266 54 KTKEYLESVGVKVIETPGEGYVE-------DLRFALESLGT-PILVVSADL-PFLN-PSIIDSVIDAAASVEVPIVTVVK 123 (177)
T ss_pred hHHHHHHhcCceEEEcCCCChHH-------HHHHHHHhcCC-ceEEEeccc-ccCC-HHHHHHHHHHHhhccCceeEeec
Confidence 45678888999999999988552 77777778887 999999853 2222 2222 222234444443321
Q ss_pred -------------CCCcceeecCCCCccCcccCCHHHHHHHHH
Q 023717 153 -------------NEFPAFFTETSGSKVPCRVDSPEDCARLID 182 (278)
Q Consensus 153 -------------~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~ 182 (278)
-..-.||.-+-+ .+-++++++++..+.-+
T Consensus 124 ~G~v~~Glni~~~~~~~~~~~i~~~-~la~NVNT~eDl~~a~~ 165 (177)
T COG2266 124 AGRVPVGLNIVGGKQEEEILEIDNP-ELAVNVNTPEDLKKAER 165 (177)
T ss_pred cCccceeeEeecCCCcceeEEeecc-ceeEecCCHHHHHHHHH
Confidence 111123333333 33478888888665433
No 149
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=32.11 E-value=3.3e+02 Score=27.71 Aligned_cols=17 Identities=18% Similarity=0.163 Sum_probs=9.6
Q ss_pred chhhhHhHhhhCCeeEE
Q 023717 132 DIPRTLEYLETHGVCVA 148 (278)
Q Consensus 132 Di~~TLE~LET~GV~V~ 148 (278)
|=-.+-++|+..||||.
T Consensus 115 DK~~~k~~l~~~GVpv~ 131 (499)
T PRK08654 115 SKINAKKLMKKAGVPVL 131 (499)
T ss_pred CHHHHHHHHHHcCcCCC
Confidence 44455556666666654
No 150
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=32.09 E-value=49 Score=25.63 Aligned_cols=45 Identities=27% Similarity=0.229 Sum_probs=32.4
Q ss_pred chhhhHhHhhhCCeeEEeecCCCCcceeec-CCCCccCcccCCHHH
Q 023717 132 DIPRTLEYLETHGVCVAAYKTNEFPAFFTE-TSGSKVPCRVDSPED 176 (278)
Q Consensus 132 Di~~TLE~LET~GV~V~gy~t~~fPaFy~~-~Sg~~~~~r~d~~~e 176 (278)
|+.+..+.|..+|++++....+....||++ -+|..+....+..++
T Consensus 69 dl~~~~~~l~~~G~~~~~~~~~~~~~~~f~DPdG~~ie~~~~~~~~ 114 (121)
T cd07244 69 DFASLKEKLRQAGVKEWKENTSEGDSFYFLDPDGHKLELHVGSLAS 114 (121)
T ss_pred HHHHHHHHHHHcCCcccCCCCCCccEEEEECCCCCEEEEEeCCHHH
Confidence 899999999999999987654434455554 457777776665544
No 151
>PRK06139 short chain dehydrogenase; Provisional
Probab=31.72 E-value=2.4e+02 Score=26.59 Aligned_cols=103 Identities=16% Similarity=0.184 Sum_probs=51.1
Q ss_pred CCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCcceeecCCCC
Q 023717 86 GIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGS 165 (278)
Q Consensus 86 GI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~ 165 (278)
+=.|++|||-||+-+ -+..-|.+-+- .|++++-... .+....+.++..|..+..+
T Consensus 7 ~k~vlITGAs~GIG~------aia~~la~~G~-~Vvl~~R~~~---~l~~~~~~~~~~g~~~~~~--------------- 61 (330)
T PRK06139 7 GAVVVITGASSGIGQ------ATAEAFARRGA-RLVLAARDEE---ALQAVAEECRALGAEVLVV--------------- 61 (330)
T ss_pred CCEEEEcCCCCHHHH------HHHHHHHHCCC-EEEEEECCHH---HHHHHHHHHHhcCCcEEEE---------------
Confidence 446899999999955 34444444332 2444433222 2334445555555433222
Q ss_pred ccCcccCCHHHHHHHHHHHHhcCCCCeEEEEeC-CC---ccCCCChHHHHHHHH
Q 023717 166 KVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVP-IP---REHAASGRVIESAIQ 215 (278)
Q Consensus 166 ~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanP-iP---~e~~~~~~~i~~~i~ 215 (278)
+.-+.+++++.+++..-.+..-+--++|.|. +. .-...+.+++++.++
T Consensus 62 --~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~ 113 (330)
T PRK06139 62 --PTDVTDADQVKALATQAASFGGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQ 113 (330)
T ss_pred --EeeCCCHHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCcccCCHHHHHHHHH
Confidence 2345667777777665443322223455543 21 112345555555554
No 152
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=31.64 E-value=30 Score=26.89 Aligned_cols=46 Identities=26% Similarity=0.320 Sum_probs=27.2
Q ss_pred hhhHhHhhhCCeeEEeecCCCCcceeecCCCCccCcccCCHHHHHHHHHH
Q 023717 134 PRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDV 183 (278)
Q Consensus 134 ~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~ 183 (278)
-+.+||+- .|.||+.... .+..++.. .+...-. .+++++.++.+..
T Consensus 86 ~k~~e~~~-~G~pvi~~~~-~~~~~~~~-~~~~~~~-~~~~~~l~~~i~~ 131 (135)
T PF13692_consen 86 NKLLEAMA-AGKPVIASDN-GAEGIVEE-DGCGVLV-ANDPEELAEAIER 131 (135)
T ss_dssp HHHHHHHC-TT--EEEEHH-HCHCHS----SEEEE--TT-HHHHHHHHHH
T ss_pred HHHHHHHH-hCCCEEECCc-chhhheee-cCCeEEE-CCCHHHHHHHHHH
Confidence 46778887 9999999987 35555543 3333322 6789998887764
No 153
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal.
Probab=31.63 E-value=46 Score=30.37 Aligned_cols=54 Identities=28% Similarity=0.509 Sum_probs=41.6
Q ss_pred ccccCCCccccccccchhhhcC-CCeEEEecccc---cccchhhhHhHhhhCCeeEEee
Q 023717 96 GGVHRHGEHTMDISSDLTELGR-TPVAVVSAGIK---SILDIPRTLEYLETHGVCVAAY 150 (278)
Q Consensus 96 GGVHrg~~~t~DiSaDL~eL~r-tpV~VVcaG~K---sILDi~~TLE~LET~GV~V~gy 150 (278)
|||-+-.- ...-|-||.+|+. +|+.|+|-=.. ++++.+.-.+|=+++|.|++.-
T Consensus 135 gGvl~R~G-hTEaavdL~~lAGl~p~~vicEil~~dG~m~~~~~~~~fA~~~~l~~isi 192 (199)
T TIGR00506 135 GGVLTRGG-HTEASVDLAELAGLKPAGVICEMMNDDGTMARKPELMEYAKKHNLKLISI 192 (199)
T ss_pred CCCcCCCC-hHHHHHHHHHHcCCCceEEEEEEeCCCCCccCHHHHHHHHHHcCCcEEEH
Confidence 55643211 3578999999994 69999995333 5999999999999999999864
No 154
>PLN02884 6-phosphofructokinase
Probab=31.62 E-value=84 Score=31.61 Aligned_cols=62 Identities=16% Similarity=0.128 Sum_probs=39.3
Q ss_pred eecCCHHHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCCccccccccchhh
Q 023717 35 CVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTE 114 (278)
Q Consensus 35 ~VGl~~~el~~la~~~~~~~K~srRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~e 114 (278)
.+-|+.+.+..+...+...+..||-+.. ..-....-+..||..++.= | +..||+-...|.+
T Consensus 104 ~~~l~~~~v~~i~~~GGt~LGtsR~~~~------------~~~i~~~L~~~~Id~LivI--G-----GdgS~~~a~~L~~ 164 (411)
T PLN02884 104 EMPLSRKVVQNIHLSGGSLLGVSRGGAK------------TSDIVDSIEARGINMLFVL--G-----GNGTHAGANAIHN 164 (411)
T ss_pred eeecCHHHHHHHHhCCCceeccCCCCcc------------HHHHHHHHHHcCCCEEEEE--C-----CchHHHHHHHHHH
Confidence 3448888898887765668888876641 2223344567899887763 2 2336666666665
Q ss_pred h
Q 023717 115 L 115 (278)
Q Consensus 115 L 115 (278)
.
T Consensus 165 ~ 165 (411)
T PLN02884 165 E 165 (411)
T ss_pred H
Confidence 4
No 155
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=31.49 E-value=45 Score=30.88 Aligned_cols=54 Identities=20% Similarity=0.336 Sum_probs=41.9
Q ss_pred ccccCCCccccccccchhhhcC-CCeEEEecc---cccccchhhhHhHhhhCCeeEEee
Q 023717 96 GGVHRHGEHTMDISSDLTELGR-TPVAVVSAG---IKSILDIPRTLEYLETHGVCVAAY 150 (278)
Q Consensus 96 GGVHrg~~~t~DiSaDL~eL~r-tpV~VVcaG---~KsILDi~~TLE~LET~GV~V~gy 150 (278)
|||-+-.- .-.-|-||.+|+. +|+.|+|-= .-++++.+.-.+|=+.+|.|++.-
T Consensus 145 gGvl~R~G-HTEaavdLa~lAGl~p~~vicEil~~dG~ma~~~~~~~fA~~~~l~~isi 202 (214)
T PRK01792 145 GGVLTRRG-HTEAAVDLARLAGYKEAGVICEITNDDGTMARTPEIVEFAKKFGYAVVTI 202 (214)
T ss_pred CCCccCCC-hHHHHHHHHHHcCCCceEEEEEEecCCCCccCHHHHHHHHHHcCCcEEEH
Confidence 56643211 3478999999995 599999953 346999999999999999999864
No 156
>PRK06114 short chain dehydrogenase; Provisional
Probab=31.47 E-value=2.9e+02 Score=24.04 Aligned_cols=87 Identities=23% Similarity=0.289 Sum_probs=46.0
Q ss_pred CCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCcceeecCCC
Q 023717 85 VGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSG 164 (278)
Q Consensus 85 aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg 164 (278)
.|=.+++|||-||+-+ .+..-|.+-+ ..|++++..... .+....+.|+..|..+..+
T Consensus 7 ~~k~~lVtG~s~gIG~------~ia~~l~~~G-~~v~~~~r~~~~--~~~~~~~~l~~~~~~~~~~-------------- 63 (254)
T PRK06114 7 DGQVAFVTGAGSGIGQ------RIAIGLAQAG-ADVALFDLRTDD--GLAETAEHIEAAGRRAIQI-------------- 63 (254)
T ss_pred CCCEEEEECCCchHHH------HHHHHHHHCC-CEEEEEeCCcch--HHHHHHHHHHhcCCceEEE--------------
Confidence 3456899999999843 6676666654 244444322211 2345566676655332211
Q ss_pred CccCcccCCHHHHHHHHHHH-HhcCCCCeEEEEeC
Q 023717 165 SKVPCRVDSPEDCARLIDVN-MKLKLGSGLVIGVP 198 (278)
Q Consensus 165 ~~~~~r~d~~~e~A~~~~~~-~~l~l~~g~lvanP 198 (278)
+..+.+++++.+++..- ..++--. +||.|.
T Consensus 64 ---~~D~~~~~~i~~~~~~~~~~~g~id-~li~~a 94 (254)
T PRK06114 64 ---AADVTSKADLRAAVARTEAELGALT-LAVNAA 94 (254)
T ss_pred ---EcCCCCHHHHHHHHHHHHHHcCCCC-EEEECC
Confidence 23355667777766643 3333222 455554
No 157
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=31.41 E-value=3.5e+02 Score=24.55 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=20.3
Q ss_pred CCchhHHHHHHHHHHHHHCCCcccEEEEEcCc
Q 023717 2 PYPQNFETAKEVEAIVRNNGAVPATIAILEGL 33 (278)
Q Consensus 2 PyP~Nle~A~~~E~~vR~~GavPATIaii~G~ 33 (278)
+..+-+++|+++-+++++.|+ --|||++
T Consensus 52 ~~~~~~~~a~~l~~l~~~~gv----~liINd~ 79 (221)
T PRK06512 52 DEATFQKQAEKLVPVIQEAGA----AALIAGD 79 (221)
T ss_pred CHHHHHHHHHHHHHHHHHhCC----EEEEeCH
Confidence 344567889999999999983 2456654
No 158
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=31.31 E-value=1e+02 Score=32.59 Aligned_cols=59 Identities=12% Similarity=0.147 Sum_probs=41.5
Q ss_pred eecCCCCcceeecCCCCccCcccCCHHHHHHHHHHHHhcCCCCeEEEEeCCCccCCCChHHHHHHHHHHHH
Q 023717 149 AYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALR 219 (278)
Q Consensus 149 gy~t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~~~i~~~i~~Al~ 219 (278)
|+....++-+|+..+.+.+ +.++..-||+...-|+.+|+.++++||.+.++++|++.++
T Consensus 216 g~~~~~~~~vl~s~~aHyS------------~~KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~ 274 (608)
T TIGR03811 216 GKDLQKLGKWLVPQTKHYS------------WLKAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAA 274 (608)
T ss_pred ccccccceEEEECCCccHH------------HHHHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHh
Confidence 3444456667777765432 2344456799888899999999999999888888776544
No 159
>PRK09989 hypothetical protein; Provisional
Probab=31.08 E-value=2.3e+02 Score=25.30 Aligned_cols=92 Identities=11% Similarity=0.105 Sum_probs=49.3
Q ss_pred chhhhHhHhhhCCeeEEeecCC--CCc-ceeecCCCCccCcccCCHHHHHHHHHHHHhcCCCCeEEEEeCCCccCCCChH
Q 023717 132 DIPRTLEYLETHGVCVAAYKTN--EFP-AFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGR 208 (278)
Q Consensus 132 Di~~TLE~LET~GV~V~gy~t~--~fP-aFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~~ 208 (278)
+.....+.|+..|+.|.++.+. .++ +-+...+ .-+.+-+..+.+.+.+.....||-+.=+++..-+|.. .+.+
T Consensus 41 ~~~~~~~~l~~~Gl~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~i~~A~~lg~~~v~v~~g~~~~~--~~~~ 116 (258)
T PRK09989 41 STLQIQKQLEQNHLTLALFNTAPGDINAGEWGLSA--LPGREHEARADIDLALEYALALNCEQVHVMAGVVPAG--EDAE 116 (258)
T ss_pred CHHHHHHHHHHcCCcEEEeccCCCccCCCCCcccC--CCccHHHHHHHHHHHHHHHHHhCcCEEEECccCCCCC--CCHH
Confidence 4567788899999999988753 121 1010000 0011111224466777777888765222222223322 2322
Q ss_pred ----HHHHHHHHHHHHHHHcCCC
Q 023717 209 ----VIESAIQSALREAREKNIT 227 (278)
Q Consensus 209 ----~i~~~i~~Al~ea~~~gi~ 227 (278)
.+.+.+++....|++.|++
T Consensus 117 ~~~~~~~~~l~~l~~~a~~~gv~ 139 (258)
T PRK09989 117 RYRAVFIDNLRYAADRFAPHGKR 139 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCE
Confidence 2456667777788888885
No 160
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=31.02 E-value=1.6e+02 Score=26.04 Aligned_cols=60 Identities=27% Similarity=0.291 Sum_probs=39.5
Q ss_pred cCCCeEEEecccccccchhhhHh---HhhhCCeeEEeecCCCCcceeecCCCCccCcccCCHHHHHHHHHHH--HhcCCC
Q 023717 116 GRTPVAVVSAGIKSILDIPRTLE---YLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVN--MKLKLG 190 (278)
Q Consensus 116 ~rtpV~VVcaG~KsILDi~~TLE---~LET~GV~V~gy~t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~--~~l~l~ 190 (278)
.+.|++++=+ .+-.-+.|++ .|+.+|+-|+.- .|+||. +-.+++|..+.+-.+ ..||++
T Consensus 111 ~~~pv~i~P~---~m~~~~~~~~Nl~~L~~~G~~ii~P----~~g~~~---------~p~~~~~~~~~i~~~~l~~lg~~ 174 (181)
T TIGR00421 111 ERRKLVLVPR---ETPLNSIHLENMLRLSRMGAIILPP----MPAFYT---------RPKSVEDMIDFIVGRVLDQLGIE 174 (181)
T ss_pred cCCCEEEEeC---CCcCCHHHHHHHHHHHHCCCEEECC----CCcccC---------CCCCHHHHHHHHHHHHHHHcCCC
Confidence 5678887774 5556666676 999999999853 478873 445677766555433 345554
Q ss_pred C
Q 023717 191 S 191 (278)
Q Consensus 191 ~ 191 (278)
.
T Consensus 175 ~ 175 (181)
T TIGR00421 175 N 175 (181)
T ss_pred c
Confidence 3
No 161
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=30.95 E-value=2.4e+02 Score=24.95 Aligned_cols=85 Identities=22% Similarity=0.258 Sum_probs=55.1
Q ss_pred cccccchhhhHhHhhhC-----------C-eeEEeecCC----------CCcceeecCCCCccCcccCCHHHHHHHHHHH
Q 023717 127 IKSILDIPRTLEYLETH-----------G-VCVAAYKTN----------EFPAFFTETSGSKVPCRVDSPEDCARLIDVN 184 (278)
Q Consensus 127 ~KsILDi~~TLE~LET~-----------G-V~V~gy~t~----------~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~ 184 (278)
-..|+|+..|+++|+.. | |.+||-+.. .+-.||... ...++.+.+..+.-..+...
T Consensus 29 ~~~Iidl~~T~~~L~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~~~~~~~i~~--rw~~G~LTN~~~~~~~~~~~ 106 (193)
T cd01425 29 GIHIIDLEKTLEKLRLALNFIANIAAKGGKILFVGTKPQAQRAVKKFAERTGSFYVNG--RWLGGTLTNWKTIRKSIKRL 106 (193)
T ss_pred CeEEEeHHHHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCeeecC--eecCCcCCCHHHHHHHHHHH
Confidence 34899999999999542 3 666666531 123344332 36677788877765555433
Q ss_pred Hhc----------------CCCCeEEEEeCCCccCCCChHHHHHHHHHHHHHHHHcCC
Q 023717 185 MKL----------------KLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNI 226 (278)
Q Consensus 185 ~~l----------------~l~~g~lvanPiP~e~~~~~~~i~~~i~~Al~ea~~~gi 226 (278)
..+ .+|.-++|.+|..+ .+|++||...||
T Consensus 107 ~~~~~~~~~k~~~g~~~~~~~Pdlviv~~~~~~-------------~~ai~Ea~~l~I 151 (193)
T cd01425 107 KKLEKEKLEKNLGGIKDMFRLPDLVIVLDPRKE-------------HQAIREASKLGI 151 (193)
T ss_pred HHHHHHHHHHhcccccccccCCCEEEEeCCccc-------------hHHHHHHHHcCC
Confidence 222 47888999998332 367888888887
No 162
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=30.88 E-value=2.1e+02 Score=26.17 Aligned_cols=115 Identities=14% Similarity=0.091 Sum_probs=66.5
Q ss_pred HHHHHHHHHHCCCcEEEecccc-----cccCCCccccccccchhhhcCCC-eEEEecccccccchhhhHhHhhhCCeeEE
Q 023717 75 VSATMFFASMVGIPVFVTGGIG-----GVHRHGEHTMDISSDLTELGRTP-VAVVSAGIKSILDIPRTLEYLETHGVCVA 148 (278)
Q Consensus 75 VaaTm~lA~~aGI~VFaTGGIG-----GVHrg~~~t~DiSaDL~eL~rtp-V~VVcaG~KsILDi~~TLE~LET~GV~V~ 148 (278)
||+-..+|.+.|++.-.-++-- .+| |-. ...-..+|..+.+.+ .+|+=-+.+ .+++..+.|...|.+
T Consensus 117 ISS~~aaaA~lg~pl~~~~~~~~~~v~s~h-G~~-~~~~~~~l~~~~~~~~t~vi~~~~~---~~~~i~~~L~~~g~~-- 189 (257)
T PRK15473 117 VSSFLGAAAELGVEYTVPEVSQSLIITRME-GRT-PVPAREQLESFASHQTSMAIFLSVQ---RIHRVAERLIAGGYP-- 189 (257)
T ss_pred hhHHHHHHHHcCCCcccccccccEEEEeec-CCC-CCCchhhHHHHhcCCCeEEEECCch---hHHHHHHHHHHcCCC--
Confidence 5666778888999752111100 112 211 111123678888766 333333444 478889999887642
Q ss_pred eecCCCCcceeecCCCCccCccc-CCHHHHHHHHHHHHhcCCCCeEEEEeCCCc
Q 023717 149 AYKTNEFPAFFTETSGSKVPCRV-DSPEDCARLIDVNMKLKLGSGLVIGVPIPR 201 (278)
Q Consensus 149 gy~t~~fPaFy~~~Sg~~~~~r~-d~~~e~A~~~~~~~~l~l~~g~lvanPiP~ 201 (278)
++.|.++...-+.+-+-.+ .++++++..+... .+.-+.-++|.+.+-.
T Consensus 190 ----~~~~v~v~e~l~~~~E~i~~~tl~~l~~~~~~~-~~~~~~~ivvG~~~~~ 238 (257)
T PRK15473 190 ----ATTPVAVIYKATWPESQTVRGTLADIAEKVRDA-GIRKTALILVGNFLGE 238 (257)
T ss_pred ----CCCeEEEEEECCCCCcEEEEEEHHHHHHHHHhc-CCCCCEEEEEchhccC
Confidence 4667888887777766433 4588888866554 3444555666665543
No 163
>PRK07109 short chain dehydrogenase; Provisional
Probab=30.86 E-value=1.5e+02 Score=27.90 Aligned_cols=102 Identities=15% Similarity=0.117 Sum_probs=51.6
Q ss_pred CCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCcceeecCCC
Q 023717 85 VGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSG 164 (278)
Q Consensus 85 aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg 164 (278)
.+=.|++|||-||+-+ .+..-|.+-+ ..|++++-... .+....+.++..|..+..+
T Consensus 7 ~~k~vlITGas~gIG~------~la~~la~~G-~~Vvl~~R~~~---~l~~~~~~l~~~g~~~~~v-------------- 62 (334)
T PRK07109 7 GRQVVVITGASAGVGR------ATARAFARRG-AKVVLLARGEE---GLEALAAEIRAAGGEALAV-------------- 62 (334)
T ss_pred CCCEEEEECCCCHHHH------HHHHHHHHCC-CEEEEEECCHH---HHHHHHHHHHHcCCcEEEE--------------
Confidence 3446999999999955 3444444433 23555443322 2334455555555443322
Q ss_pred CccCcccCCHHHHHHHHHH-HHhcCCCCeEEEEeCCC----ccCCCChHHHHHHH
Q 023717 165 SKVPCRVDSPEDCARLIDV-NMKLKLGSGLVIGVPIP----REHAASGRVIESAI 214 (278)
Q Consensus 165 ~~~~~r~d~~~e~A~~~~~-~~~l~l~~g~lvanPiP----~e~~~~~~~i~~~i 214 (278)
+..+.+++++.+++.. ..++|--. ++|-|.-. .-..++.+.+++.+
T Consensus 63 ---~~Dv~d~~~v~~~~~~~~~~~g~iD-~lInnAg~~~~~~~~~~~~~~~~~~~ 113 (334)
T PRK07109 63 ---VADVADAEAVQAAADRAEEELGPID-TWVNNAMVTVFGPFEDVTPEEFRRVT 113 (334)
T ss_pred ---EecCCCHHHHHHHHHHHHHHCCCCC-EEEECCCcCCCCchhhCCHHHHHHHH
Confidence 2345567777776653 33444222 34444321 11245666666653
No 164
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=30.81 E-value=3.4e+02 Score=23.14 Aligned_cols=74 Identities=14% Similarity=0.157 Sum_probs=45.1
Q ss_pred hhhHhHhhhCCeeEEeecCCCCcceeecCCCCccCcccCCHHHHHHHHHHHHhcCCCCeEEEEeCCCccCCCChHHHHHH
Q 023717 134 PRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESA 213 (278)
Q Consensus 134 ~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~~~i~~~ 213 (278)
+.+++.|+.+|..++.|.-+.. +|.-.+++++.+-+..+ + -++.+|+... .. +...--++
T Consensus 110 ~~~~~~l~~~G~~~v~w~~~~~------------D~~~~~~~~i~~~~~~~--~-~~g~Iil~Hd-~~----~~~~t~~~ 169 (191)
T TIGR02764 110 KAVLKAAESLGYTVVHWSVDSR------------DWKNPGVESIVDRVVKN--T-KPGDIILLHA-SD----SAKQTVKA 169 (191)
T ss_pred HHHHHHHHHcCCeEEEecCCCC------------ccCCCCHHHHHHHHHhc--C-CCCCEEEEeC-CC----CcHhHHHH
Confidence 5789999999999998874321 23334566665533322 2 2455777775 11 12223456
Q ss_pred HHHHHHHHHHcCCC
Q 023717 214 IQSALREAREKNIT 227 (278)
Q Consensus 214 i~~Al~ea~~~gi~ 227 (278)
+.+.+...+++|.+
T Consensus 170 l~~~i~~l~~~Gy~ 183 (191)
T TIGR02764 170 LPTIIKKLKEKGYE 183 (191)
T ss_pred HHHHHHHHHHCCCE
Confidence 78888888887753
No 165
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=30.67 E-value=4.1e+02 Score=24.11 Aligned_cols=35 Identities=9% Similarity=-0.038 Sum_probs=22.4
Q ss_pred CCCeEEEecccccccchhhhHhHhhhCCeeEEeecC
Q 023717 117 RTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKT 152 (278)
Q Consensus 117 rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t 152 (278)
+-.|.++..+. +-----....++|..+||++++..
T Consensus 65 ~~~V~~i~G~~-~s~~~~a~~~~~~~~~vp~i~~~~ 99 (340)
T cd06349 65 DPRIVAVLGDF-SSGVSMAASPIYQRAGLVQLSPTN 99 (340)
T ss_pred cCCeEEEECCC-ccHhHHHhHHHHHhCCCeEEecCC
Confidence 44576665433 222223456789999999999863
No 166
>PRK14072 6-phosphofructokinase; Provisional
Probab=30.52 E-value=68 Score=32.13 Aligned_cols=86 Identities=20% Similarity=0.252 Sum_probs=46.9
Q ss_pred HCCCcccEEEEEcCce------eecCCH---HHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHHHHHHHHCCCcE
Q 023717 19 NNGAVPATIAILEGLP------CVGLST---EELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPV 89 (278)
Q Consensus 19 ~~GavPATIaii~G~i------~VGl~~---~el~~la~~~~~~~K~srRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~V 89 (278)
++|.+=-.+++.+|-- .+=|+. +.++.+...+.....-||.++...- . --....-.+...+..||..
T Consensus 31 ~~g~~~~V~G~~~G~~GLl~~~~~~l~~~~~~~i~~i~~~gGt~LgssR~~~~~~~-~---~~~~~~~~~~~l~~~~Id~ 106 (416)
T PRK14072 31 KHKKIGKVYGARNGIIGILDEDLIDLSKESDEALAALAHTPSGALGSCRYKLKSLE-E---DRAEYERLLEVFKAHDIGY 106 (416)
T ss_pred HhCCceEEEEEecChHHhcCCCeeeCChhhHhHHHHHhcCCCeEeccCCCCCcccc-c---ChHHHHHHHHHHHHcCCCE
Confidence 3454444566665521 233333 4444455544457888887752100 0 1122344466678899998
Q ss_pred EEecccccccCCCccccccccchhhh
Q 023717 90 FVTGGIGGVHRHGEHTMDISSDLTEL 115 (278)
Q Consensus 90 FaTGGIGGVHrg~~~t~DiSaDL~eL 115 (278)
|+.= | +..||+-...|.|.
T Consensus 107 LivI--G-----GdgS~~~a~~L~e~ 125 (416)
T PRK14072 107 FFYN--G-----GNDSMDTALKVSQL 125 (416)
T ss_pred EEEE--C-----ChHHHHHHHHHHHH
Confidence 8874 3 33477777776664
No 167
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=30.50 E-value=3.7e+02 Score=24.43 Aligned_cols=145 Identities=8% Similarity=0.024 Sum_probs=80.9
Q ss_pred ccccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCCccccccccchhhhcCCCeEE-Eecccccccchh
Q 023717 56 TARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAV-VSAGIKSILDIP 134 (278)
Q Consensus 56 ~srRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~V-VcaG~KsILDi~ 134 (278)
+.-=+|..-.+.-.-.|.++..+...|-..|+ +++-..+..-.+.|+.+ +=--+ -+-|..
T Consensus 31 ad~iElgip~sdp~adG~~i~~~~~~a~~~g~------------------~~~v~~vr~~~~~Pl~lM~y~n~-~~~~~~ 91 (244)
T PRK13125 31 VDILELGIPPKYPKYDGPVIRKSHRKVKGLDI------------------WPLLEEVRKDVSVPIILMTYLED-YVDSLD 91 (244)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCc------------------HHHHHHHhccCCCCEEEEEecch-hhhCHH
Confidence 44555556666666677777777666665555 44444443333456532 11111 134677
Q ss_pred hhHhHhhhCCeeEEeecCCCCcceeecCCCCccCcccCCHHHHHHHHHHHHhcCCCCeEEEEeCCCccCCCChHHHHHHH
Q 023717 135 RTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAI 214 (278)
Q Consensus 135 ~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~~~i~~~i 214 (278)
..++.+...|+--+.+. .+|+ |+.++.-+++..-+++|+..++ ..+|- -+.+.++.++
T Consensus 92 ~~i~~~~~~Gadgvii~--------------dlp~--e~~~~~~~~~~~~~~~Gl~~~~-~v~p~-----T~~e~l~~~~ 149 (244)
T PRK13125 92 NFLNMARDVGADGVLFP--------------DLLI--DYPDDLEKYVEIIKNKGLKPVF-FTSPK-----FPDLLIHRLS 149 (244)
T ss_pred HHHHHHHHcCCCEEEEC--------------CCCC--CcHHHHHHHHHHHHHcCCCEEE-EECCC-----CCHHHHHHHH
Confidence 77888888877666552 2222 3456777888888899998774 45552 2234445554
Q ss_pred HHHHHH--HHHcCCCCccCChHHHHHHHH
Q 023717 215 QSALRE--AREKNITGNAETPFLLARVNE 241 (278)
Q Consensus 215 ~~Al~e--a~~~gi~Gk~vTPflL~~i~e 241 (278)
+.+=.- ....+..|..+.+.++.++.+
T Consensus 150 ~~~~~~l~msv~~~~g~~~~~~~~~~i~~ 178 (244)
T PRK13125 150 KLSPLFIYYGLRPATGVPLPVSVERNIKR 178 (244)
T ss_pred HhCCCEEEEEeCCCCCCCchHHHHHHHHH
Confidence 432100 013444677777777665543
No 168
>PRK09134 short chain dehydrogenase; Provisional
Probab=30.31 E-value=2.9e+02 Score=24.05 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=13.3
Q ss_pred CCCcEEEecccccccC
Q 023717 85 VGIPVFVTGGIGGVHR 100 (278)
Q Consensus 85 aGI~VFaTGGIGGVHr 100 (278)
.|-.+++|||-||+.+
T Consensus 8 ~~k~vlItGas~giG~ 23 (258)
T PRK09134 8 APRAALVTGAARRIGR 23 (258)
T ss_pred CCCEEEEeCCCcHHHH
Confidence 4567999999999955
No 169
>PRK05926 hypothetical protein; Provisional
Probab=30.23 E-value=57 Score=32.00 Aligned_cols=23 Identities=22% Similarity=0.063 Sum_probs=20.3
Q ss_pred HHHHHHHHCCCcEEEecccccccC
Q 023717 77 ATMFFASMVGIPVFVTGGIGGVHR 100 (278)
Q Consensus 77 aTm~lA~~aGI~VFaTGGIGGVHr 100 (278)
-||..||.+||++-+| +|+|.-.
T Consensus 211 ~~i~~a~~~Gi~~~sg-mi~G~gE 233 (370)
T PRK05926 211 EIHKTAHSLGIPSNAT-MLCYHRE 233 (370)
T ss_pred HHHHHHHHcCCcccCc-eEEeCCC
Confidence 7899999999999998 9998633
No 170
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=30.21 E-value=1.1e+02 Score=27.33 Aligned_cols=92 Identities=11% Similarity=0.085 Sum_probs=51.7
Q ss_pred chhhhHhHhhhCCeeEEeecCCCCcceeecCCCCccCcccCCHHHHHHHHHHHHhcCCCCeEEEEeCCC----ccCCCCh
Q 023717 132 DIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIP----REHAASG 207 (278)
Q Consensus 132 Di~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP----~e~~~~~ 207 (278)
++..-.+.|+..|+.|.++..+.+..| .-.+ ...+.|-+..+..-++++....||.+.= .+ .+.+ .......
T Consensus 53 ~~~~l~~~l~~~Gl~i~~~~~~~~~~~-~~~~-~d~~~r~~~~~~~~~~i~~a~~lG~~~v-~~-~~~~~~~~~~~~~~~ 128 (284)
T PRK13210 53 ERLSLVKAIYETGVRIPSMCLSGHRRF-PFGS-RDPATRERALEIMKKAIRLAQDLGIRTI-QL-AGYDVYYEEKSEETR 128 (284)
T ss_pred HHHHHHHHHHHcCCCceEEecccccCc-CCCC-CCHHHHHHHHHHHHHHHHHHHHhCCCEE-EE-CCcccccccccHHHH
Confidence 455667789999999998864322111 0001 0111122344566788888888987553 33 2211 1111122
Q ss_pred HHHHHHHHHHHHHHHHcCCC
Q 023717 208 RVIESAIQSALREAREKNIT 227 (278)
Q Consensus 208 ~~i~~~i~~Al~ea~~~gi~ 227 (278)
+.+-+.+++....|++.||+
T Consensus 129 ~~~~~~l~~l~~~a~~~gv~ 148 (284)
T PRK13210 129 QRFIEGLAWAVEQAAAAQVM 148 (284)
T ss_pred HHHHHHHHHHHHHHHHhCCE
Confidence 44456677788889999994
No 171
>PRK10060 RNase II stability modulator; Provisional
Probab=30.03 E-value=2.4e+02 Score=29.25 Aligned_cols=81 Identities=21% Similarity=0.227 Sum_probs=56.8
Q ss_pred hhHHHHHHHHHHHHHCCCcccEEEEEcCceeecCCHHHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHHHHHHHH
Q 023717 5 QNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASM 84 (278)
Q Consensus 5 ~Nle~A~~~E~~vR~~GavPATIaii~G~i~VGl~~~el~~la~~~~~~~K~srRDl~~~~a~~~~GaTTVaaTm~lA~~ 84 (278)
.|.+.+...=+..|+.|. .|++=| .|..-.-+.+|....-+.+|++|.=+.... .....-.-|.+-..+|+.
T Consensus 538 ~~~~~~~~~l~~L~~~G~---~ialDd----fGtg~ssl~~L~~l~~d~iKiD~sfv~~i~-~~~~~~~~v~~ii~~a~~ 609 (663)
T PRK10060 538 ENEELALSVIQQFSQLGA---QVHLDD----FGTGYSSLSQLARFPIDAIKLDQSFVRDIH-KQPVSQSLVRAIVAVAQA 609 (663)
T ss_pred cCHHHHHHHHHHHHHCCC---EEEEEC----CCCchhhHHHHHhCCCCEEEECHHHHhccc-cCcchHHHHHHHHHHHHH
Confidence 355666666677777776 466443 577778888887765678899864443333 334455678899999999
Q ss_pred CCCcEEEec
Q 023717 85 VGIPVFVTG 93 (278)
Q Consensus 85 aGI~VFaTG 93 (278)
.||+|.|.|
T Consensus 610 lg~~viAeG 618 (663)
T PRK10060 610 LNLQVIAEG 618 (663)
T ss_pred CCCcEEEec
Confidence 999999984
No 172
>CHL00067 rps2 ribosomal protein S2
Probab=29.78 E-value=2.2e+02 Score=26.26 Aligned_cols=26 Identities=35% Similarity=0.298 Sum_probs=20.5
Q ss_pred CCCCeEEEEeCCCccCCCChHHHHHHHHHHHHHHHHcCC
Q 023717 188 KLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNI 226 (278)
Q Consensus 188 ~l~~g~lvanPiP~e~~~~~~~i~~~i~~Al~ea~~~gi 226 (278)
.+|.-++|.+|.-+. .|+.||...||
T Consensus 160 ~~P~~iiv~d~~~~~-------------~ai~Ea~~l~I 185 (230)
T CHL00067 160 KLPDIVIIIDQQEEY-------------TALRECRKLGI 185 (230)
T ss_pred cCCCEEEEeCCcccH-------------HHHHHHHHcCC
Confidence 478899999996432 68888988887
No 173
>PRK13530 arsenate reductase; Provisional
Probab=29.43 E-value=2.2e+02 Score=23.62 Aligned_cols=88 Identities=9% Similarity=0.067 Sum_probs=46.7
Q ss_pred CeEEEecccccccch-hhhHhHhhhCCeeEEeecCCCCcceeecCCCCccCcccCCHHHHHHHHHHHHhcCCC-CeEEEE
Q 023717 119 PVAVVSAGIKSILDI-PRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLG-SGLVIG 196 (278)
Q Consensus 119 pV~VVcaG~KsILDi-~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~-~g~lva 196 (278)
.+-|-|||... -.+ |.+++.|+.+|+++-+.....+..+-.+...+=+ .++ +++.++.. -++ ....+.
T Consensus 31 ~~~v~SAG~~~-~~~~~~a~~~l~e~Gi~~~~~~s~~l~~~~~~~~D~ii--~m~--~~~~~~~~-----~~p~~~~~~~ 100 (133)
T PRK13530 31 KWNVYSAGIEA-HGVNPNAIKAMKEVGIDISNQTSDIIDNDILNNADLVV--TLC--SHADDVCP-----STPPHVKRVH 100 (133)
T ss_pred CEEEECCCCCC-CCCCHHHHHHHHHcCCCcCCCccccCChhHhccCCEEE--Eec--hHhhhhcc-----ccCCCceEEE
Confidence 35556777521 112 7999999999999988776555544333333322 222 12111111 112 123344
Q ss_pred eCCCccCCCChHHHHHHHHH
Q 023717 197 VPIPREHAASGRVIESAIQS 216 (278)
Q Consensus 197 nPiP~e~~~~~~~i~~~i~~ 216 (278)
-+||..+..+.+..+++.++
T Consensus 101 w~i~DP~~~~~~~f~~~~~~ 120 (133)
T PRK13530 101 WGFDDPAGKEWSEFQRVRDE 120 (133)
T ss_pred CCCCCCCCCcHHHHHHHHHH
Confidence 47887777776555554443
No 174
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=29.42 E-value=4.4e+02 Score=25.53 Aligned_cols=67 Identities=15% Similarity=0.168 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHCCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccc---cchhhhHhHhhhCCeeEE
Q 023717 74 TVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSI---LDIPRTLEYLETHGVCVA 148 (278)
Q Consensus 74 TVaaTm~lA~~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsI---LDi~~TLE~LET~GV~V~ 148 (278)
.......+|...+|.++.+| .|... +. ..+..-+..+ .+.+++.+++++ -|=-.+-++|+.+|||+.
T Consensus 62 d~~~l~~~~~~~~id~I~p~-~~~~~---e~-~~~~~~~~~~---g~~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p 131 (450)
T PRK06111 62 NLEKIIEIAKKTGAEAIHPG-YGLLS---EN-ASFAERCKEE---GIVFIGPSADIIAKMGSKIEARRAMQAAGVPVV 131 (450)
T ss_pred CHHHHHHHHHHhCCCEEEeC-CCccc---cC-HHHHHHHHHC---CCeEECCCHHHHHHhCCHHHHHHHHHHCCCCCC
Confidence 34555667777777666554 22110 00 0111112222 233445555444 355556666777777653
No 175
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=29.42 E-value=59 Score=26.97 Aligned_cols=77 Identities=23% Similarity=0.278 Sum_probs=43.2
Q ss_pred CCCchhhHHHHHHHHHHCCCcEEEecccccccCC-----------Cccccccccc-hhhhcCCCeEEEecccccccchhh
Q 023717 68 RGNGATTVSATMFFASMVGIPVFVTGGIGGVHRH-----------GEHTMDISSD-LTELGRTPVAVVSAGIKSILDIPR 135 (278)
Q Consensus 68 ~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrg-----------~~~t~DiSaD-L~eL~rtpV~VVcaG~KsILDi~~ 135 (278)
..+|.||++ ..+|++.|+++|-+-=+---..| ++.--+.... +..+.+ +-+||+.|.--+| -+.
T Consensus 11 ~GsGKst~~--~~la~~lg~~~~d~D~~~~~~~g~~~~~~~~~~g~~~~~~~e~~~~~~~~~-~~~vi~~ggg~vl-~~~ 86 (171)
T PRK03731 11 RGCGKTTVG--MALAQALGYRFVDTDQWLQSTSNMTVAEIVEREGWAGFRARESAALEAVTA-PSTVIATGGGIIL-TEE 86 (171)
T ss_pred CCCCHHHHH--HHHHHHhCCCEEEccHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHhcC-CCeEEECCCCccC-CHH
Confidence 357888887 68889999998876533221111 1000011111 223444 4445655553444 567
Q ss_pred hHhHhhhCCeeEE
Q 023717 136 TLEYLETHGVCVA 148 (278)
Q Consensus 136 TLE~LET~GV~V~ 148 (278)
+.++|...|+.|.
T Consensus 87 ~~~~l~~~~~~v~ 99 (171)
T PRK03731 87 NRHFMRNNGIVIY 99 (171)
T ss_pred HHHHHHhCCEEEE
Confidence 8899988887553
No 176
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=29.41 E-value=2.7e+02 Score=29.17 Aligned_cols=128 Identities=19% Similarity=0.270 Sum_probs=79.1
Q ss_pred HHHHHHHHHHCCCcccEEEEEcCceee----cCCHHHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHHHHHHHHC
Q 023717 10 AKEVEAIVRNNGAVPATIAILEGLPCV----GLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMV 85 (278)
Q Consensus 10 A~~~E~~vR~~GavPATIaii~G~i~V----Gl~~~el~~la~~~~~~~K~srRDl~~~~a~~~~GaTTVaaTm~lA~~a 85 (278)
+.-.+..+-+.|+. .|+|.|++-.+ |++.+||.++++. |-+.++++.+-..... +.++-=.-=...
T Consensus 263 ~~~aa~~l~~~G~k--vvavsD~~G~l~np~Gid~~eL~~~~~~-----k~~i~~f~~~~~~~~~---~~~~~~~~~~v~ 332 (514)
T KOG2250|consen 263 GGHAAKKLSEKGAK--VVAVSDSKGVLINPDGIDIEELLDLADE-----KKTIKSFDGAKLSYEG---YIAGLPPWTLVE 332 (514)
T ss_pred HHHHHHHHHhcCCE--EEEEEcCceeEECCCCCCHHHHHHHHHh-----hccccccccccccCcc---ccccCcchhhHh
Confidence 45667777888888 57777665544 9999999999875 4445555543322111 232211222345
Q ss_pred CCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccc------hhhhHhHhhhCCeeEEeecCCCCccee
Q 023717 86 GIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILD------IPRTLEYLETHGVCVAAYKTNEFPAFF 159 (278)
Q Consensus 86 GI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILD------i~~TLE~LET~GV~V~gy~t~~fPaFy 159 (278)
-+++|+-|+..++--+ +--.+ +|..|+|-|.. -|..-+.||+.||-++ |.-|
T Consensus 333 ~~DI~vPCA~qn~I~~-----~nA~~----------lvak~~~~IvEGAN~ptTpeA~~vlek~gv~i~-------Pd~~ 390 (514)
T KOG2250|consen 333 KCDILVPCATQNEITG-----ENAKA----------LVAKGCKYIVEGANMPTTPEADEVLEKAGVLII-------PDIY 390 (514)
T ss_pred hCcEEeecCccCcccH-----hhHHH----------HHhcCCcEEEecCCCCCChhHHHHHHhCCeEEe-------chhh
Confidence 6788888877654222 11111 23444444432 3556788999999876 8999
Q ss_pred ecCCCCccCc
Q 023717 160 TETSGSKVPC 169 (278)
Q Consensus 160 ~~~Sg~~~~~ 169 (278)
...-|+.+.|
T Consensus 391 aNaGGVtvS~ 400 (514)
T KOG2250|consen 391 ANAGGVTVSY 400 (514)
T ss_pred ccCCCeeeeH
Confidence 9999988865
No 177
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=29.41 E-value=3.8e+02 Score=24.59 Aligned_cols=103 Identities=21% Similarity=0.310 Sum_probs=53.2
Q ss_pred HCCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCcceeecCC
Q 023717 84 MVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETS 163 (278)
Q Consensus 84 ~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~S 163 (278)
+.|=.+++|||-||+-+ .+..-|.+-+- .|++++.+... ......+.++..|..|..+
T Consensus 10 l~~k~~lVTGas~gIG~------~ia~~L~~~Ga-~Vv~~~~~~~~--~~~~~~~~i~~~g~~~~~~------------- 67 (306)
T PRK07792 10 LSGKVAVVTGAAAGLGR------AEALGLARLGA-TVVVNDVASAL--DASDVLDEIRAAGAKAVAV------------- 67 (306)
T ss_pred CCCCEEEEECCCChHHH------HHHHHHHHCCC-EEEEecCCchh--HHHHHHHHHHhcCCeEEEE-------------
Confidence 44667999999999944 55655555443 34443322111 2334445555545433322
Q ss_pred CCccCcccCCHHHHHHHHHHHHhcCCCCeEEEEeC-CCcc---CCCChHHHHHH
Q 023717 164 GSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVP-IPRE---HAASGRVIESA 213 (278)
Q Consensus 164 g~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanP-iP~e---~~~~~~~i~~~ 213 (278)
+..+.+++++.+++..-.++| +--+||.|. ++.. ..++.+.++..
T Consensus 68 ----~~Dv~d~~~~~~~~~~~~~~g-~iD~li~nAG~~~~~~~~~~~~~~~~~~ 116 (306)
T PRK07792 68 ----AGDISQRATADELVATAVGLG-GLDIVVNNAGITRDRMLFNMSDEEWDAV 116 (306)
T ss_pred ----eCCCCCHHHHHHHHHHHHHhC-CCCEEEECCCCCCCCCcccCCHHHHHHH
Confidence 234667777777776544444 223455543 3222 23455555543
No 178
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=29.40 E-value=1.3e+02 Score=31.71 Aligned_cols=128 Identities=27% Similarity=0.411 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHCCCccc---EEEEEcCce--eecC----CHHHHHHHHhcCCCcccccccchHHH-HhcCCCch----
Q 023717 7 FETAKEVEAIVRNNGAVPA---TIAILEGLP--CVGL----STEELERLAKLGSKAQKTARRDIAHV-VATRGNGA---- 72 (278)
Q Consensus 7 le~A~~~E~~vR~~GavPA---TIaii~G~i--~VGl----~~~el~~la~~~~~~~K~srRDl~~~-~a~~~~Ga---- 72 (278)
.++|..+.+-|+++|.+|- ||++-||.- +-|| -..|| +|.+ +..+ -+...+|-
T Consensus 51 ~~la~~Vk~gi~~aGg~p~ef~ti~~~Dgi~~g~~GM~ysL~sRel--iA~~-----------iE~~~~a~~~Dg~V~l~ 117 (552)
T PRK00911 51 NELADAVKEGVRAAGGVPFEFNTIGVSDGIAMGHEGMKYSLVSREV--IADS-----------IETVVNAHWFDGLVAIP 117 (552)
T ss_pred HHHHHHHHHHHHHcCCEeEEeCCCccccccccCcccceehhhhHHH--HHHH-----------HHHHhhCCCcceEEEec
Confidence 4789999999999999996 778778832 2222 22222 1111 1111 12233332
Q ss_pred ---hhHHHHHHHHHHCCCc-EEEecc--cccccCCCccccccccchhhh-cCCCeEEEecccccccchhhhHhHhhhCCe
Q 023717 73 ---TTVSATMFFASMVGIP-VFVTGG--IGGVHRHGEHTMDISSDLTEL-GRTPVAVVSAGIKSILDIPRTLEYLETHGV 145 (278)
Q Consensus 73 ---TTVaaTm~lA~~aGI~-VFaTGG--IGGVHrg~~~t~DiSaDL~eL-~rtpV~VVcaG~KsILDi~~TLE~LET~GV 145 (278)
-|+=|.|..|.+.+|| ||++|| ..|.|+|. .+|++ |+-|- ++ ..+|- +|. .-|+.+|..-+
T Consensus 118 ~CDK~~Pg~lMaaarlniPsi~v~gGpm~~G~~~g~--~~~~~-~~~e~~g~-----~~~G~---i~~-ee~~~~e~~a~ 185 (552)
T PRK00911 118 GCDKNMPGMLMAAARLNVPSIFVYGGPILPGRLKGK--DLTLV-SVFEAVGA-----YAAGK---ISE-EELKEIERNAC 185 (552)
T ss_pred cCCCCcHHHHHHHHhcCCCEEEEeCCCcCCCCCCCc--cccHH-HHHHHHHH-----HHcCC---CCH-HHHHHHHHhcC
Confidence 3566777778888998 799999 47777763 44553 44321 11 12232 122 23566677766
Q ss_pred eEEeecCCCCcceeecCC
Q 023717 146 CVAAYKTNEFPAFFTETS 163 (278)
Q Consensus 146 ~V~gy~t~~fPaFy~~~S 163 (278)
|-.| .|...||..|
T Consensus 186 ps~G----sC~~mgTANT 199 (552)
T PRK00911 186 PGAG----SCGGMFTANT 199 (552)
T ss_pred CCCC----cccccchHHH
Confidence 6544 3556666554
No 179
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=29.32 E-value=2.1e+02 Score=26.44 Aligned_cols=123 Identities=14% Similarity=0.177 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHCCCcEEEeccccc---------ccCCCccccccccchhh----h------cCCCeEEEecccccccchh
Q 023717 74 TVSATMFFASMVGIPVFVTGGIGG---------VHRHGEHTMDISSDLTE----L------GRTPVAVVSAGIKSILDIP 134 (278)
Q Consensus 74 TVaaTm~lA~~aGI~VFaTGGIGG---------VHrg~~~t~DiSaDL~e----L------~rtpV~VVcaG~KsILDi~ 134 (278)
+..+.+-++...+|+++.++.-.- +.|-....-+...-+.+ + +-..|.+|...---=-++-
T Consensus 82 ~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~g~~~~ 161 (347)
T cd06340 82 VTLAASQVAERYGVPFVVDGAVSDSITERGFKYTFRITPHDGMFTRDMFDFLKDLNEKTGKPLKTVALVHEDTEFGTSVA 161 (347)
T ss_pred hHHHHHHHHHHhCCCEEeccccchHHhhcCCceEEecCCChHHHHHHHHHHHHHhhHhcCCCCceEEEEecCchHhHHHH
Confidence 344556788889999997654321 12211111111111222 2 1256777765321112222
Q ss_pred hh-HhHhhhCCeeEEeec-----CCCCcceee--cCCCCccCcccCCHHHHHHHHHHHHhcCCCCeEEEE
Q 023717 135 RT-LEYLETHGVCVAAYK-----TNEFPAFFT--ETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIG 196 (278)
Q Consensus 135 ~T-LE~LET~GV~V~gy~-----t~~fPaFy~--~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lva 196 (278)
.. -+.++.+|++|+... +.+|...-. +.++..+=+-..+..+.+.++++-++.|++.-+++.
T Consensus 162 ~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~i~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 231 (347)
T cd06340 162 EAIKKFAKERGFEIVEDISYPANARDLTSEVLKLKAANPDAILPASYTNDAILLVRTMKEQRVEPKAVYS 231 (347)
T ss_pred HHHHHHHHHcCCEEEEeeccCCCCcchHHHHHHHHhcCCCEEEEcccchhHHHHHHHHHHcCCCCcEEEe
Confidence 22 347889999998643 223332222 234444434555777888899988899987665544
No 180
>PRK13016 dihydroxy-acid dehydratase; Provisional
Probab=29.28 E-value=1.3e+02 Score=31.79 Aligned_cols=130 Identities=18% Similarity=0.167 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHCCCccc---EEEEEcCceee-cCCHHHHHHHHhcCCCcccccccchHH-HHhcCCCch-------hh
Q 023717 7 FETAKEVEAIVRNNGAVPA---TIAILEGLPCV-GLSTEELERLAKLGSKAQKTARRDIAH-VVATRGNGA-------TT 74 (278)
Q Consensus 7 le~A~~~E~~vR~~GavPA---TIaii~G~i~V-Gl~~~el~~la~~~~~~~K~srRDl~~-~~a~~~~Ga-------TT 74 (278)
-++|..+.+-||++|.+|- ||++-||.-.= +|-..|| +|.+ +.. +-+...+|- -|
T Consensus 62 ~~la~~Vk~gv~~aGG~P~ef~ti~v~Dgi~~g~sl~~Rel--IAds-----------iE~~~~a~~~Dg~V~l~~CDK~ 128 (577)
T PRK13016 62 RERVEDVKRGVLQAGGFPLELPALSLSENFVKPTTMLYRNL--LAME-----------TEELIRSHPVDGAVLMGGCDKT 128 (577)
T ss_pred HHHHHHHHHHHHHcCCeeEecccccCcccccCCcccccHHH--HHHH-----------HHHHHhcCCccceEEeccCCCC
Confidence 4789999999999999995 77877775220 2211111 1111 111 112333333 36
Q ss_pred HHHHHHHHHHCCCc-EEEeccc--ccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeec
Q 023717 75 VSATMFFASMVGIP-VFVTGGI--GGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYK 151 (278)
Q Consensus 75 VaaTm~lA~~aGI~-VFaTGGI--GGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~ 151 (278)
+=|.|+.|.+.+|| ||++||- .|.|+|. ..|.-.|.-|..-. ..+|--+ ...|+.+|....|-.|
T Consensus 129 ~Pg~lMaaarlniPsI~v~GG~m~~G~~~g~--~~~~~~~~~e~~g~----~~~G~i~----~eel~~~e~~a~p~~G-- 196 (577)
T PRK13016 129 TPGLVMGAISMGLPMIYLPAGPMLRGNYRGK--VLGSGSDAWKYWDE----RRAGNIT----QAEWLEIEGGIARSYG-- 196 (577)
T ss_pred cHHHHHHHHhcCCCEEEEecCCCCCCccCCc--eechhHHHHHHHHH----HHcCCCC----HHHHHHHHhccCCCCC--
Confidence 66778888888998 8999994 6677763 23211232222111 2334322 2346677887777544
Q ss_pred CCCCcceeecCC
Q 023717 152 TNEFPAFFTETS 163 (278)
Q Consensus 152 t~~fPaFy~~~S 163 (278)
.|...||..|
T Consensus 197 --sC~gmgTANT 206 (577)
T PRK13016 197 --TCMTMGTAST 206 (577)
T ss_pred --cccccCHHHH
Confidence 4555555554
No 181
>PRK05867 short chain dehydrogenase; Provisional
Probab=28.99 E-value=3.2e+02 Score=23.69 Aligned_cols=86 Identities=17% Similarity=0.285 Sum_probs=42.7
Q ss_pred CCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCcceeecCCC
Q 023717 85 VGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSG 164 (278)
Q Consensus 85 aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg 164 (278)
.|=.+++|||-||+-+ -+..-|.+.+- .|++++-..+ .+..+.+.|+..|-.+..+
T Consensus 8 ~~k~vlVtGas~gIG~------~ia~~l~~~G~-~V~~~~r~~~---~~~~~~~~l~~~~~~~~~~-------------- 63 (253)
T PRK05867 8 HGKRALITGASTGIGK------RVALAYVEAGA-QVAIAARHLD---ALEKLADEIGTSGGKVVPV-------------- 63 (253)
T ss_pred CCCEEEEECCCchHHH------HHHHHHHHCCC-EEEEEcCCHH---HHHHHHHHHHhcCCeEEEE--------------
Confidence 4556999999999844 45555554443 3444433222 2333444444333211111
Q ss_pred CccCcccCCHHHHHHHHHHH-HhcCCCCeEEEEeC
Q 023717 165 SKVPCRVDSPEDCARLIDVN-MKLKLGSGLVIGVP 198 (278)
Q Consensus 165 ~~~~~r~d~~~e~A~~~~~~-~~l~l~~g~lvanP 198 (278)
...+.+++++.+++..- ..+|-.. +||.|+
T Consensus 64 ---~~D~~~~~~~~~~~~~~~~~~g~id-~lv~~a 94 (253)
T PRK05867 64 ---CCDVSQHQQVTSMLDQVTAELGGID-IAVCNA 94 (253)
T ss_pred ---EccCCCHHHHHHHHHHHHHHhCCCC-EEEECC
Confidence 23456777777766543 3344223 455553
No 182
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=28.60 E-value=1.4e+02 Score=31.32 Aligned_cols=128 Identities=27% Similarity=0.405 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHCCCccc---EEEEEcCce--eecCCHHHHHHHHhcCCCcccccccchHHHH-----hcCCCch----
Q 023717 7 FETAKEVEAIVRNNGAVPA---TIAILEGLP--CVGLSTEELERLAKLGSKAQKTARRDIAHVV-----ATRGNGA---- 72 (278)
Q Consensus 7 le~A~~~E~~vR~~GavPA---TIaii~G~i--~VGl~~~el~~la~~~~~~~K~srRDl~~~~-----a~~~~Ga---- 72 (278)
.+++..+.+-||++|.+|- ||++-||.- +-||.-. =.||--|+..+ +...+|-
T Consensus 31 ~~l~~~vk~gv~~aGg~p~ef~ti~v~Dgi~~g~~GM~yS-------------L~SRelIAdsiE~~~~~~~~Dg~v~l~ 97 (535)
T TIGR00110 31 RDLAQAVKEGIEAAGGVAFEFNTIAVCDGIAMGHEGMKYS-------------LPSREIIADSVETMVNAHRFDGLVCIP 97 (535)
T ss_pred HHHHHHHHHHHHHcCCeeEEecCCcCccccccCCcccchh-------------hhhHHHHHHHHHHHHhcCCcceEEEec
Confidence 4789999999999999996 666668765 4454331 11221122222 2233333
Q ss_pred ---hhHHHHHHHHHHCCCc-EEEeccc--ccccC-CCccccccccchhh-hcCCCeEEEecccccccchhhhHhHhhhCC
Q 023717 73 ---TTVSATMFFASMVGIP-VFVTGGI--GGVHR-HGEHTMDISSDLTE-LGRTPVAVVSAGIKSILDIPRTLEYLETHG 144 (278)
Q Consensus 73 ---TTVaaTm~lA~~aGI~-VFaTGGI--GGVHr-g~~~t~DiSaDL~e-L~rtpV~VVcaG~KsILDi~~TLE~LET~G 144 (278)
-|+=|.|+.|.+.+|| ||++||- -|.|+ |. ..|++ |.-| .++ ..+|- +| ..-|+.+|..-
T Consensus 98 ~CDK~~PG~lMaaarlniP~i~v~gGpm~~G~~~~g~--~~~~~-~~~e~~g~-----~~~G~---i~-~eel~~~e~~a 165 (535)
T TIGR00110 98 SCDKITPGMLMAAARLNIPSIFVTGGPMLPGHTKLGK--KIDLV-SAFEAVGE-----YAAGK---IS-EEELEEIERSA 165 (535)
T ss_pred cCCCCcHHHHHHHHhcCCCEEEEeCCCccCCCCCCCC--ccchh-hHHHHHHH-----HHcCC---CC-HHHHHHHHHhc
Confidence 3667788888888998 7999984 56665 52 45542 2222 111 12332 12 23467788887
Q ss_pred eeEEeecCCCCcceeecCC
Q 023717 145 VCVAAYKTNEFPAFFTETS 163 (278)
Q Consensus 145 V~V~gy~t~~fPaFy~~~S 163 (278)
.|-.| .|..+||..|
T Consensus 166 ~ps~G----sC~gmgTANT 180 (535)
T TIGR00110 166 CPGCG----SCSGMFTANT 180 (535)
T ss_pred CCCCC----CcccEEHHHH
Confidence 77554 5566666555
No 183
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=28.58 E-value=2.1e+02 Score=24.59 Aligned_cols=70 Identities=19% Similarity=0.256 Sum_probs=46.6
Q ss_pred hhCCeeEEeecCCCCcceeecCCCCccCcccCCHHHHHHHHHHHHh-----cCCC-CeEEEE--------------eCCC
Q 023717 141 ETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMK-----LKLG-SGLVIG--------------VPIP 200 (278)
Q Consensus 141 ET~GV~V~gy~t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~-----l~l~-~g~lva--------------nPiP 200 (278)
+...+-++||+.. +++|++- +.+.+.+.+++.++.-++ +|.+ ..+.++ .++|
T Consensus 20 ~~~~~~i~g~~~~-------~s~gi~~-G~I~d~~~~~~~I~~ai~~ae~~~~~~i~~V~v~i~g~~v~~~~~~~~i~i~ 91 (187)
T smart00842 20 EDGEINVIGVGEV-------PSRGIRK-GVIVDIEAAARAIREAVEEAERMAGVKIDSVYVGISGRHLKSVNVSGVVAIP 91 (187)
T ss_pred CCCCEEEEEEEEe-------cCCCccC-cEEECHHHHHHHHHHHHHHHHHHhCCcccEEEEEEcCCceEEEeeEEEEECC
Confidence 3556889999832 4566654 688899999988874322 3544 234444 3466
Q ss_pred ccCCCChHHHHHHHHHHHH
Q 023717 201 REHAASGRVIESAIQSALR 219 (278)
Q Consensus 201 ~e~~~~~~~i~~~i~~Al~ 219 (278)
+..++.++|++++++|..
T Consensus 92 -~~~i~~~di~~~~~~a~~ 109 (187)
T smart00842 92 -DKEITQEDIDRVLEAAKA 109 (187)
T ss_pred -CCEECHHHHHHHHHHhhc
Confidence 346999999998877654
No 184
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=28.33 E-value=51 Score=26.68 Aligned_cols=51 Identities=24% Similarity=0.333 Sum_probs=38.6
Q ss_pred cchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecC------CCCcceee
Q 023717 110 SDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKT------NEFPAFFT 160 (278)
Q Consensus 110 aDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t------~~fPaFy~ 160 (278)
+|+..=++.|++++-.|+..--..+.-.++.|..|+||+.... .+.|.|.-
T Consensus 5 ~~~L~~A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G 61 (137)
T PF00205_consen 5 ADLLSSAKRPVILAGRGARRSGAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLG 61 (137)
T ss_dssp HHHHHH-SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEE
T ss_pred HHHHHhCCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCccccccCCCCchhcc
Confidence 4566678999999999998777788888999999999998752 24566654
No 185
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=28.27 E-value=1.7e+02 Score=28.78 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHCCCcccEEEEEcCce
Q 023717 5 QNFETAKEVEAIVRNNGAVPATIAILEGLP 34 (278)
Q Consensus 5 ~Nle~A~~~E~~vR~~GavPATIaii~G~i 34 (278)
+-++.|+.+-+++++.|+ .-|+|+.+
T Consensus 185 ~~~~~a~~L~~l~~~~~~----~lIIND~v 210 (347)
T PRK02615 185 QRLEEAKKLKELCHRYGA----LFIVNDRV 210 (347)
T ss_pred HHHHHHHHHHHHHHHhCC----eEEEeChH
Confidence 346889999999999985 35667654
No 186
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=28.16 E-value=53 Score=24.31 Aligned_cols=27 Identities=44% Similarity=0.680 Sum_probs=17.9
Q ss_pred HHCC--CcccEEEEEcCce-eec--CCHHHHHHH
Q 023717 18 RNNG--AVPATIAILEGLP-CVG--LSTEELERL 46 (278)
Q Consensus 18 R~~G--avPATIaii~G~i-~VG--l~~~el~~l 46 (278)
.+.| .+||+ +|||++ .+| .+.+||+.|
T Consensus 43 ~~ygv~~vPal--vIng~~~~~G~~p~~~el~~~ 74 (76)
T PF13192_consen 43 EKYGVMSVPAL--VINGKVVFVGRVPSKEELKEL 74 (76)
T ss_dssp HHTT-SSSSEE--EETTEEEEESS--HHHHHHHH
T ss_pred HHcCCCCCCEE--EECCEEEEEecCCCHHHHHHH
Confidence 5555 47887 789997 677 456666654
No 187
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=28.09 E-value=2.6e+02 Score=27.27 Aligned_cols=60 Identities=20% Similarity=0.085 Sum_probs=38.5
Q ss_pred CCCChHHHHHHHHH---HHHHHHHcCCCCccCC---hHH---------HHHHHHHhCCccHHHHHHHHHHHHHHHHHHHH
Q 023717 203 HAASGRVIESAIQS---ALREAREKNITGNAET---PFL---------LARVNELTGGLSLASNIALVKNNALIGAKISV 267 (278)
Q Consensus 203 ~~~~~~~i~~~i~~---Al~ea~~~gi~Gk~vT---Pfl---------L~~i~elT~G~Sl~aNiaLl~nNa~laa~IA~ 267 (278)
.+|+.++|+++|++ |-+.|++.|..|=+++ -|| ++|-++. |-|+ +|.+|+.-+|-.
T Consensus 138 ~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~y--GGsl-------enR~Rf~~eii~ 208 (370)
T cd02929 138 REMDKDDIKRVRRWYVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEY--GGSL-------ENRARFWRETLE 208 (370)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCcccc--CCCh-------HhhhHHHHHHHH
Confidence 56999999998875 4455667788887775 344 4444432 3354 566666666666
Q ss_pred HHHH
Q 023717 268 ALAQ 271 (278)
Q Consensus 268 ~~~~ 271 (278)
+..+
T Consensus 209 aIr~ 212 (370)
T cd02929 209 DTKD 212 (370)
T ss_pred HHHH
Confidence 6544
No 188
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=27.85 E-value=5.4e+02 Score=24.58 Aligned_cols=160 Identities=13% Similarity=0.122 Sum_probs=93.4
Q ss_pred HHHHHHHCCCcEEEeccccccc-CC----Cccccc----cccchhhhcCCCeEEE-ecccccccchhhhHhHhhhCCeeE
Q 023717 78 TMFFASMVGIPVFVTGGIGGVH-RH----GEHTMD----ISSDLTELGRTPVAVV-SAGIKSILDIPRTLEYLETHGVCV 147 (278)
Q Consensus 78 Tm~lA~~aGI~VFaTGGIGGVH-rg----~~~t~D----iSaDL~eL~rtpV~VV-caG~KsILDi~~TLE~LET~GV~V 147 (278)
+..++..+|-+...|+|-|=-. .| +.-+|| .-..+..-...||+|= =+|--.-+++.+|.+.||..||-=
T Consensus 27 SAri~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~~~v~~tV~~~~~aGvag 106 (290)
T TIGR02321 27 VAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSIPLIADIDTGFGNAVNVHYVVPQYEAAGASA 106 (290)
T ss_pred HHHHHHHcCCCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeE
Confidence 4567778888888887754111 12 111222 2223333445687763 367677779999999999999866
Q ss_pred EeecCCCCcceeecCCCCccC--cccCCHHHHHHHHHHHHhcCCCCe-EEEEeCCCccCCCChHHHHHHHHHHHHHHHHc
Q 023717 148 AAYKTNEFPAFFTETSGSKVP--CRVDSPEDCARLIDVNMKLKLGSG-LVIGVPIPREHAASGRVIESAIQSALREAREK 224 (278)
Q Consensus 148 ~gy~t~~fPaFy~~~Sg~~~~--~r~d~~~e~A~~~~~~~~l~l~~g-~lvanPiP~e~~~~~~~i~~~i~~Al~ea~~~ 224 (278)
+-.....+|. .-|+..+ ..+.+++|.++-|++-.+...... +|++.= +-.+....++++|++|...++ .
T Consensus 107 i~IEDq~~pk----~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ART---Da~~~~~g~deAI~Ra~aY~e-A 178 (290)
T TIGR02321 107 IVMEDKTFPK----DTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARV---EALIAGLGQQEAVRRGQAYEE-A 178 (290)
T ss_pred EEEeCCCCCc----ccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEe---ccccccCCHHHHHHHHHHHHH-c
Confidence 6555555554 2233211 357788888887776555433333 444542 111122234888888776655 4
Q ss_pred CC-----CCccCChHHHHHHHHHhCC
Q 023717 225 NI-----TGNAETPFLLARVNELTGG 245 (278)
Q Consensus 225 gi-----~Gk~vTPflL~~i~elT~G 245 (278)
|- .|...+|--+.++.+...+
T Consensus 179 GAD~ifv~~~~~~~~ei~~~~~~~~~ 204 (290)
T TIGR02321 179 GADAILIHSRQKTPDEILAFVKSWPG 204 (290)
T ss_pred CCCEEEecCCCCCHHHHHHHHHhcCC
Confidence 43 3444566777777776654
No 189
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=27.74 E-value=58 Score=30.67 Aligned_cols=88 Identities=24% Similarity=0.373 Sum_probs=48.4
Q ss_pred cccccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCCccccccc-----------cc-----hhh-hcC
Q 023717 55 KTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDIS-----------SD-----LTE-LGR 117 (278)
Q Consensus 55 K~srRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrg~~~t~DiS-----------aD-----L~e-L~r 117 (278)
|+..-+.=..+..-.+|.|||+- .+|...|++++-+.-. .-....+++. .+ |.+ +.+
T Consensus 129 ~~~~~~~I~l~G~~GsGKStvg~--~La~~Lg~~~id~D~~----i~~~~G~~i~ei~~~~G~~~fr~~e~~~l~~ll~~ 202 (309)
T PRK08154 129 RAARRRRIALIGLRGAGKSTLGR--MLAARLGVPFVELNRE----IEREAGLSVSEIFALYGQEGYRRLERRALERLIAE 202 (309)
T ss_pred hccCCCEEEEECCCCCCHHHHHH--HHHHHcCCCEEeHHHH----HHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHHHhh
Confidence 33333333333445789999976 4688889998854421 0000011111 01 223 344
Q ss_pred CCeEEEecccccccchhhhHhHhhhCCeeEEe
Q 023717 118 TPVAVVSAGIKSILDIPRTLEYLETHGVCVAA 149 (278)
Q Consensus 118 tpV~VVcaG~KsILDi~~TLE~LET~GV~V~g 149 (278)
.+.+||++|. ++...+.++++|-..++-|.=
T Consensus 203 ~~~~VI~~Gg-g~v~~~~~~~~l~~~~~~V~L 233 (309)
T PRK08154 203 HEEMVLATGG-GIVSEPATFDLLLSHCYTVWL 233 (309)
T ss_pred CCCEEEECCC-chhCCHHHHHHHHhCCEEEEE
Confidence 5556666665 457788899888877765443
No 190
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=27.65 E-value=2.7e+02 Score=23.88 Aligned_cols=78 Identities=13% Similarity=0.164 Sum_probs=41.1
Q ss_pred hhhhHhHhhhCCeeEEeecCCCCcceeecCCCCccCcccCCHHH----HHHHHHHHHhcCCCCeEEEEeCCCccCCCChH
Q 023717 133 IPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPED----CARLIDVNMKLKLGSGLVIGVPIPREHAASGR 208 (278)
Q Consensus 133 i~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~~~~~r~d~~~e----~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~~ 208 (278)
....|+.+..+||||+.+.++ .....-...+---+..+ +|+.+..+. +-+..+++....|.. ....
T Consensus 69 ~~~~l~~~~~~gIpvv~~d~~------~~~~~~~~~~v~~d~~~~G~~~a~~l~~~~--~~~~~v~~~~~~~~~--~~~~ 138 (257)
T PF13407_consen 69 LAPFLEKAKAAGIPVVTVDSD------EAPDSPRAAYVGTDNYEAGKLAAEYLAEKL--GAKGKVLILSGSPGN--PNTQ 138 (257)
T ss_dssp THHHHHHHHHTTSEEEEESST------HHTTSTSSEEEEE-HHHHHHHHHHHHHHHH--TTTEEEEEEESSTTS--HHHH
T ss_pred HHHHHHHHhhcCceEEEEecc------ccccccceeeeeccHHHHHHHHHHHHHHHh--ccCceEEeccCCCCc--hHHH
Confidence 347788999999999999877 00111111122222333 344443333 333667766666652 1222
Q ss_pred HHHHHHHHHHHH
Q 023717 209 VIESAIQSALRE 220 (278)
Q Consensus 209 ~i~~~i~~Al~e 220 (278)
.-.+.+.+++++
T Consensus 139 ~r~~g~~~~l~~ 150 (257)
T PF13407_consen 139 ERLEGFRDALKE 150 (257)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 345556666766
No 191
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=27.63 E-value=3.6e+02 Score=23.68 Aligned_cols=17 Identities=29% Similarity=0.683 Sum_probs=7.8
Q ss_pred HHHHHCCCcEEEecccc
Q 023717 80 FFASMVGIPVFVTGGIG 96 (278)
Q Consensus 80 ~lA~~aGI~VFaTGGIG 96 (278)
.+++...|||.+-|||.
T Consensus 183 ~i~~~~~ipvia~GGi~ 199 (230)
T TIGR00007 183 ELVKAVNVPVIASGGVS 199 (230)
T ss_pred HHHHhCCCCEEEeCCCC
Confidence 33444445555544444
No 192
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=27.58 E-value=4e+02 Score=22.93 Aligned_cols=87 Identities=17% Similarity=0.271 Sum_probs=44.8
Q ss_pred HCCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCcceeecCC
Q 023717 84 MVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETS 163 (278)
Q Consensus 84 ~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~S 163 (278)
+.|-.+++|||-||+-+ -+..-|.+-+- .|++++-... ......+.++..|..+..
T Consensus 5 ~~~~~vlItGasg~iG~------~la~~l~~~G~-~v~~~~r~~~---~~~~~~~~~~~~~~~~~~-------------- 60 (262)
T PRK13394 5 LNGKTAVVTGAASGIGK------EIALELARAGA-AVAIADLNQD---GANAVADEINKAGGKAIG-------------- 60 (262)
T ss_pred CCCCEEEEECCCChHHH------HHHHHHHHCCC-eEEEEeCChH---HHHHHHHHHHhcCceEEE--------------
Confidence 44667999999999954 34555544433 3444433221 233444555444432211
Q ss_pred CCccCcccCCHHHHHHHHHHH-HhcCCCCeEEEEeC
Q 023717 164 GSKVPCRVDSPEDCARLIDVN-MKLKLGSGLVIGVP 198 (278)
Q Consensus 164 g~~~~~r~d~~~e~A~~~~~~-~~l~l~~g~lvanP 198 (278)
+...+.+++.+.+++..- ..++ +--+||.|.
T Consensus 61 ---~~~Dl~~~~~~~~~~~~~~~~~~-~~d~vi~~a 92 (262)
T PRK13394 61 ---VAMDVTNEDAVNAGIDKVAERFG-SVDILVSNA 92 (262)
T ss_pred ---EECCCCCHHHHHHHHHHHHHHcC-CCCEEEECC
Confidence 234566777777766643 3333 223455543
No 193
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=27.50 E-value=44 Score=24.20 Aligned_cols=62 Identities=21% Similarity=0.140 Sum_probs=39.3
Q ss_pred HHHHHCCCcEEEecccccccCCCccccccccchhhhc-CCCeEEEecccccccchhhhHhHhhhCCeeEEeec
Q 023717 80 FFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELG-RTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYK 151 (278)
Q Consensus 80 ~lA~~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~-rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~ 151 (278)
.+-+.+|++++.-..-+..|.. ++..+. +..++++|-...+ =++-..+|.+..+|++++..-
T Consensus 19 ~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~d~~i~iS~sg~t-~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 19 ELLELTGIEVVALIATELEHAS---------LLSLLRKGDVVIALSYSGRT-EELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred HHhcccCCceEEeCCcHHHHHH---------HHhcCCCCCEEEEEECCCCC-HHHHHHHHHHHHcCCeEEEEe
Confidence 3344458888876655544432 122222 3446666655544 457778999999999999875
No 194
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=27.49 E-value=1.2e+02 Score=24.68 Aligned_cols=95 Identities=19% Similarity=0.213 Sum_probs=53.3
Q ss_pred ccccccchhhhcCCCeEEEecccc---cccchhhhHhHhhhCCeeEEeecCCCCcceeecCCCCccCcccCCHHHHHHHH
Q 023717 105 TMDISSDLTELGRTPVAVVSAGIK---SILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLI 181 (278)
Q Consensus 105 t~DiSaDL~eL~rtpV~VVcaG~K---sILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~ 181 (278)
..|--.+|-.-+..|.+|+|-|.. .+=.-..--+||..+|||-- ..+ .-+...++.+++....
T Consensus 22 R~~~a~~l~~~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~~~--------~I~------~e~~s~~T~ena~~~~ 87 (150)
T cd06259 22 RLDAAAELYRAGPAPKLIVSGGQGPGEGYSEAEAMARYLIELGVPAE--------AIL------LEDRSTNTYENARFSA 87 (150)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCCHH--------Hee------ecCCCCCHHHHHHHHH
Confidence 445555666666677777766654 23455566788999998421 111 1123344555555555
Q ss_pred HHHHhcCCCCeEEEEeCCCccCCCChHHHHHHHHHHHHHHHHcCC
Q 023717 182 DVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNI 226 (278)
Q Consensus 182 ~~~~~l~l~~g~lvanPiP~e~~~~~~~i~~~i~~Al~ea~~~gi 226 (278)
..-++.+..+-+||+.|. .+.+|...+++.+.
T Consensus 88 ~~~~~~~~~~i~lVTs~~-------------H~~Ra~~~~~~~~~ 119 (150)
T cd06259 88 ELLRERGIRSVLLVTSAY-------------HMPRALLIFRKAGL 119 (150)
T ss_pred HHHHhcCCCeEEEECCHH-------------HHHHHHHHHHHcCC
Confidence 555555666777776652 34455555565554
No 195
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=27.47 E-value=54 Score=29.60 Aligned_cols=35 Identities=20% Similarity=0.193 Sum_probs=30.9
Q ss_pred cCCCeEEEecccccccchhhhHhHhhhCCeeEEee
Q 023717 116 GRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAY 150 (278)
Q Consensus 116 ~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy 150 (278)
+..-++||-++..++=|+.+.+++|+..|++++|.
T Consensus 236 ~d~vilV~~~~~t~~~~~~~~~~~l~~~~~~~~G~ 270 (274)
T TIGR03029 236 ARGTLIVSRVNETRLHELTSLKEHLSGVGVRVVGA 270 (274)
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 33457788899999999999999999999999996
No 196
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=27.45 E-value=59 Score=25.76 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=31.3
Q ss_pred hcCCCeEEEeccc-ccccchhhhHhHhhhCCeeEEeecCCCCcceeecCCCCc
Q 023717 115 LGRTPVAVVSAGI-KSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSK 166 (278)
Q Consensus 115 L~rtpV~VVcaG~-KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~~ 166 (278)
+-...++||.+-- -|..|..|.++++...+|||+|.=. .+-.|.+++-|.+
T Consensus 23 ~~~~g~ivVTTPq~la~~dv~r~~~~~~~~~vpilGvVE-NMs~~~Cp~Cg~~ 74 (81)
T PF10609_consen 23 LPIDGAIVVTTPQELALADVRRAIDMFRKLNVPILGVVE-NMSYFVCPHCGER 74 (81)
T ss_dssp H--SEEEEEE-CCC--HHHHHHHHHHHHCTT-EEEEEEE-CT-EEE-TTT--E
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHHHHhcCCCcEEEEE-CCCccCCCCCCCe
Confidence 3345567777654 4899999999999999999999853 3455666654443
No 197
>cd05537 POLBc_Pol_II DNA polymerase type-II subfamily catalytic domain. Bacteria contain five DNA polymerases (I, II, III, IV and V). DNA polymerase II (Pol II) is a prototype for the B-family of polymerases. The role of Pol II in a variety of cellular activities, such as repair of DNA damaged by UV irradiation or oxidation has been proven by genetic studies. DNA polymerase III is the main enzyme responsible for replication of the bacterial chromosome; however, In vivo studies have also shown that Pol II is able to participate in chromosomal DNA replication with larger role in lagging-strand replication.
Probab=27.43 E-value=77 Score=31.14 Aligned_cols=111 Identities=18% Similarity=0.138 Sum_probs=57.7
Q ss_pred hhhhHhHhhhCCeeEEeec-CCCCcceeecCCCCccCcccCCHHHHHHHHHHHH------hcCCCCeE-----------E
Q 023717 133 IPRTLEYLETHGVCVAAYK-TNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNM------KLKLGSGL-----------V 194 (278)
Q Consensus 133 i~~TLE~LET~GV~V~gy~-t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~------~l~l~~g~-----------l 194 (278)
|..|.+++|+.|..|+ |+ ||.. |..-.......--..-.+++++.+..+| .+++++.+ +
T Consensus 131 l~~~~~~~e~~g~~Vi-YgDTDSv--fV~~~~~~~~~~~~~~~~~l~~~In~~~~~~~~~~~~~~~~l~Le~Ekvy~~~l 207 (371)
T cd05537 131 MKQTRAWIEQQGYQVI-YGDTDST--FVWLGEELDAAEAQAIGKELASQINQWWAQKLKEEFGLESFLEIEFETHYSRFF 207 (371)
T ss_pred HHHHHHHHHHcCCEEE-EecCCce--EEecCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCceEEEeeeeeeee
Confidence 5578899999999988 88 7754 4433221111111111346677676654 33433221 1
Q ss_pred EE------eCCCccCC-----------------CChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHHHHhCCc
Q 023717 195 IG------VPIPREHA-----------------ASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGL 246 (278)
Q Consensus 195 va------nPiP~e~~-----------------~~~~~i~~~i~~Al~ea~~~gi~Gk~vTPflL~~i~elT~G~ 246 (278)
+. .--.+.|+ +-....-.++++..++.-+.=..++++.-|+-+.+.++..|+
T Consensus 208 l~~~~~~~~~~KKrYag~~~~~~~~~i~~KGle~vRrD~~~l~k~~~~~vl~~il~~~~~~~~~~~~~~~l~~g~ 282 (371)
T cd05537 208 MPTIRGSDEGSKKRYAGLKSTDGGDELVFKGLETVRSDWTPLARQFQKELYERVFNDEPYEGFIKETVEELLAGE 282 (371)
T ss_pred eeccccccccccceEEEEEEECCCcEEEeecceeEecchHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Confidence 10 00112221 111122344555555555555556777778777777777774
No 198
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=27.32 E-value=48 Score=26.85 Aligned_cols=57 Identities=19% Similarity=0.181 Sum_probs=41.1
Q ss_pred EEEecccccccCCCccccccccchhhhcCCCeEEEec-------ccccccchhhhHhHhhhCC-eeEE
Q 023717 89 VFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSA-------GIKSILDIPRTLEYLETHG-VCVA 148 (278)
Q Consensus 89 VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVca-------G~KsILDi~~TLE~LET~G-V~V~ 148 (278)
|++.|--=|+|+|- ..+=.-+.+++..++++|+. +.+.|++...-++.|+..| |-.+
T Consensus 1 v~~~G~FDg~H~GH---~~~l~~a~~~~~~~iv~v~~d~~~~~~~~~~i~~~eeR~~~l~~~~~Vd~v 65 (125)
T TIGR01518 1 VLTYGTFDLLHWGH---INLLERAKQLGDYLIVALSTDEFNLQKQKKAYHSYEHRKLILETIRYVDLV 65 (125)
T ss_pred CEEcceeCCCCHHH---HHHHHHHHHcCCEEEEEEechHHHhhcCCCCCCCHHHHHHHHHcCCCccEE
Confidence 46677778899983 33444455667777776665 4678888898999999997 8766
No 199
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=27.09 E-value=1.6e+02 Score=25.02 Aligned_cols=96 Identities=23% Similarity=0.238 Sum_probs=52.5
Q ss_pred cCCCeEEEeccccc----ccchhhhHhHhhhCCeeEEeecCCCCcceeecCCCCccCcccC--CHHHHHHHHHHHHhcCC
Q 023717 116 GRTPVAVVSAGIKS----ILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVD--SPEDCARLIDVNMKLKL 189 (278)
Q Consensus 116 ~rtpV~VVcaG~Ks----ILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~~~~~r~d--~~~e~A~~~~~~~~l~l 189 (278)
....+-|-|||..+ =.| |+|+|.|+.+|+..-+.....+-.|...+..+=+ .+| +..++-.+.-.+. +
T Consensus 27 ~~~~~~v~SAGt~~~~g~~~~-~~a~~vl~e~Gid~~~~~~k~i~~~~~~~~DlIi--tmd~~~~~~~~~~~p~~~-~-- 100 (139)
T COG0394 27 APDNVEVDSAGTGGHPGEPPD-PRAVEVLAEHGIDISGHRSKQLTEEDFDEFDLII--TMDESNAADLCPLAPGNT-L-- 100 (139)
T ss_pred ccCCeEEECCccCCCCCCCCC-HHHHHHHHHcCCCcCCccCccCchhhhhhCCEEE--EeChHHHhhHhhcCcccc-c--
Confidence 33567777888433 222 6899999999999998766666666654444333 333 2222222111110 0
Q ss_pred CCeEEEE-eCCCccCCCChHHHHHHHHHHHH
Q 023717 190 GSGLVIG-VPIPREHAASGRVIESAIQSALR 219 (278)
Q Consensus 190 ~~g~lva-nPiP~e~~~~~~~i~~~i~~Al~ 219 (278)
.+-+. -+||..+.-+.++.++..++-..
T Consensus 101 --~~~~~~~~v~DP~~~~~e~~~~~~~~i~~ 129 (139)
T COG0394 101 --LLEYEHWEVPDPYYGSGEEFEEVYRLIED 129 (139)
T ss_pred --cccccCCCCCCCCCCchHHHHHHHHHHHH
Confidence 11111 57888777665555554444333
No 200
>COG1775 HgdB Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB [Amino acid transport and metabolism]
Probab=27.07 E-value=2.3e+02 Score=28.61 Aligned_cols=95 Identities=13% Similarity=0.128 Sum_probs=55.3
Q ss_pred EEecccccccchhhhHhHhhhCCeeEEeecCCCCcceeecCCC-------------CccC---cccCCHHHHHHHHHHHH
Q 023717 122 VVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSG-------------SKVP---CRVDSPEDCARLIDVNM 185 (278)
Q Consensus 122 VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg-------------~~~~---~r~d~~~e~A~~~~~~~ 185 (278)
++=+|.--+-|=+.+++.+|..|.+|+++....=.-||...-+ ++.| |..++.--+=.+.+.-.
T Consensus 237 i~~~g~p~~~~~~~v~~~~e~~~~~vv~~~~c~~ar~f~~~~~e~~~v~D~lAd~Y~~~~~~~~~pn~e~r~k~i~~mvk 316 (379)
T COG1775 237 ILITGIPILGDNPKVWEILEEVGEFVVKDEVCTGARAFEFAVSEGGDVEDALADQYFKIPCACYSPNDEFRVKYISRMVK 316 (379)
T ss_pred EEeecCcccCCCcchhHHHHhhcceeeecccccceeEeeccccccccHHHHHHHHHhccccccCCccHHHHHHHHHHHHH
Confidence 5567887888999999999999999999974444444443332 1111 22222112222333334
Q ss_pred hcCCCCeEEEEeCCCccCCCChHHHHHHHHH
Q 023717 186 KLKLGSGLVIGVPIPREHAASGRVIESAIQS 216 (278)
Q Consensus 186 ~l~l~~g~lvanPiP~e~~~~~~~i~~~i~~ 216 (278)
..+..|.++..+--=..++++..++++.+++
T Consensus 317 E~~vDGvv~~~l~fC~p~~~e~~~lk~~~kE 347 (379)
T COG1775 317 EYNVDGVVLYTLRFCKPYSVEYPELKRRLKE 347 (379)
T ss_pred HcCCCeEeehhhhccCccccccHHHHHHHHh
Confidence 4566666666665555556665555555544
No 201
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=27.00 E-value=2e+02 Score=27.50 Aligned_cols=46 Identities=20% Similarity=0.298 Sum_probs=29.0
Q ss_pred cccchhhhHhHhhh------------CCeeEEeecC----------CCCcceeecCCCCccCcccCCHHH
Q 023717 129 SILDIPRTLEYLET------------HGVCVAAYKT----------NEFPAFFTETSGSKVPCRVDSPED 176 (278)
Q Consensus 129 sILDi~~TLE~LET------------~GV~V~gy~t----------~~fPaFy~~~Sg~~~~~r~d~~~e 176 (278)
-|+|+.+|+++|+. .-|-+||-+. ..+-.||.. +-.+|+.+.+...
T Consensus 39 hIIDL~kT~~~l~~A~~~v~~~~~~~g~ILfVgTK~~a~~~V~~~A~r~g~~yV~--~RwLgG~LTN~~t 106 (252)
T COG0052 39 HIIDLQKTLERLREAYKFLRRIAANGGKILFVGTKKQAQEPVKEFAERTGAYYVN--GRWLGGMLTNFKT 106 (252)
T ss_pred EEEEHHHHHHHHHHHHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHHhCCceec--CcccCccccCchh
Confidence 69999999999953 2355666542 145566643 4466666666444
No 202
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=26.99 E-value=4.1e+02 Score=26.53 Aligned_cols=128 Identities=17% Similarity=0.155 Sum_probs=73.8
Q ss_pred cccccccchHHHHhcCCCchhhHHHHH--HHHHHCCCcEEEecccccccCCCccccccccchh-hhcCC------CeEEE
Q 023717 53 AQKTARRDIAHVVATRGNGATTVSATM--FFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLT-ELGRT------PVAVV 123 (278)
Q Consensus 53 ~~K~srRDl~~~~a~~~~GaTTVaaTm--~lA~~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~-eL~rt------pV~VV 123 (278)
+.|..|.+.....+...+|+.+-+..+ .+.+.+||-+.- ++|-=-|+. -|++. .|+||
T Consensus 235 ~~k~Grs~~g~~aa~sHtgalag~~~~~~a~~~~~Gv~~~~-------------~~~el~~~~~~l~~~~~~~g~rvaiv 301 (447)
T TIGR02717 235 VLKSGTSEAGAKAASSHTGALAGSDEAYDAAFKQAGVIRAD-------------SIEELFDLARLLSNQPLPKGNRVAII 301 (447)
T ss_pred EEecCCChhhhhhhhhccccccChHHHHHHHHHHCCeEEeC-------------CHHHHHHHHHHHhcCCCCCCCeEEEE
Confidence 346666665555555556665543333 455677764321 222111211 23333 37777
Q ss_pred eccc-ccccchhhhHhHhhhCCeeEEeecC-------CCCcceeecCCCCccCcccCCHHHHHHHHHHHHhcCCCCeEEE
Q 023717 124 SAGI-KSILDIPRTLEYLETHGVCVAAYKT-------NEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVI 195 (278)
Q Consensus 124 caG~-KsILDi~~TLE~LET~GV~V~gy~t-------~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lv 195 (278)
+.|. -.+ .+...++..|+.+--+.. ..+|.|.+..-++.+ ....+++...++++.-.+-.=-.++++
T Consensus 302 s~sGG~g~----l~aD~~~~~Gl~lp~ls~~t~~~L~~~lp~~~~~~NPlDl-~~~~~~~~~~~al~~l~~dp~vd~Vlv 376 (447)
T TIGR02717 302 TNAGGPGV----IATDACEENGLELAELSEATKNKLRNILPPEASIKNPVDV-LGDATPERYAKALKTVAEDENVDGVVV 376 (447)
T ss_pred ECCchHHH----HHHHHHHHcCCCcCCCCHHHHHHHHHhCccccccCCCEec-CCCCCHHHHHHHHHHHHcCCCCCEEEE
Confidence 6543 232 356678888888776642 368888888888887 455788888888886655322345555
Q ss_pred EeC
Q 023717 196 GVP 198 (278)
Q Consensus 196 anP 198 (278)
...
T Consensus 377 ~~~ 379 (447)
T TIGR02717 377 VLT 379 (447)
T ss_pred Ecc
Confidence 554
No 203
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=26.85 E-value=3.6e+02 Score=24.52 Aligned_cols=118 Identities=17% Similarity=0.116 Sum_probs=65.6
Q ss_pred HHHHHHHHCCCcEEEecccccccC-CCcccccccc----------ch--hhhcCCCeEEEecccccccchhh-hHhHhhh
Q 023717 77 ATMFFASMVGIPVFVTGGIGGVHR-HGEHTMDISS----------DL--TELGRTPVAVVSAGIKSILDIPR-TLEYLET 142 (278)
Q Consensus 77 aTm~lA~~aGI~VFaTGGIGGVHr-g~~~t~DiSa----------DL--~eL~rtpV~VVcaG~KsILDi~~-TLE~LET 142 (278)
+..-++...+|++|..+....... ...-.|..+. +. .+++...|.++...--.-.+.-. .-+.|+.
T Consensus 82 a~~~~~~~~~vp~i~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~ 161 (340)
T cd06349 82 AASPIYQRAGLVQLSPTNSHPDFTKGGDFIFRNSTSQAIEAPLLADYAVKDLGFKKVAILSVNTDWGRTSADIFVKAAEK 161 (340)
T ss_pred HhHHHHHhCCCeEEecCCCCCccccCCCeEEEccCCcHHHHHHHHHHHHHHcCCcEEEEEecCChHhHHHHHHHHHHHHH
Confidence 445678889999997554322111 1122232322 22 23455678777765444434433 4478899
Q ss_pred CCeeEEeec-----CCCCcceeec--CCCCccCcccCCHHHHHHHHHHHHhcCCCCeEE
Q 023717 143 HGVCVAAYK-----TNEFPAFFTE--TSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLV 194 (278)
Q Consensus 143 ~GV~V~gy~-----t~~fPaFy~~--~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~l 194 (278)
.|+.|++.. +.+|-....+ .++-.+=+-.-...+++.++++-++.|+..-++
T Consensus 162 ~g~~v~~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~ 220 (340)
T cd06349 162 LGGQVVAHEEYVPGEKDFRPTITRLRDANPDAIILISYYNDGAPIARQARAVGLDIPVV 220 (340)
T ss_pred cCCEEEEEEEeCCCCCcHHHHHHHHHhcCCCEEEEccccchHHHHHHHHHHcCCCCcEE
Confidence 999999743 2344443332 233333233445667788888888888765543
No 204
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=26.80 E-value=70 Score=29.04 Aligned_cols=38 Identities=13% Similarity=0.217 Sum_probs=33.5
Q ss_pred CCCeEEEecccccccchhhhHhHhh-hCCeeEEeecCCC
Q 023717 117 RTPVAVVSAGIKSILDIPRTLEYLE-THGVCVAAYKTNE 154 (278)
Q Consensus 117 rtpV~VVcaG~KsILDi~~TLE~LE-T~GV~V~gy~t~~ 154 (278)
+.||+++=|=--.+.+-++-++.|+ +.|+-++.|+.|+
T Consensus 121 ~~PvvlaPAMN~~M~~~~~ni~~L~~~~g~~~i~~~~~~ 159 (196)
T PRK08305 121 QRPVVLAISTNDALGLNAKNLGRLLNTKNIYFVPFGQDD 159 (196)
T ss_pred CCCEEEEECCCHHHHhCHHHHHHHHhcCCEEEEecCCCC
Confidence 5899988888778888899999998 5999999999876
No 205
>PTZ00256 glutathione peroxidase; Provisional
Probab=26.65 E-value=2.3e+02 Score=24.36 Aligned_cols=30 Identities=10% Similarity=0.181 Sum_probs=18.7
Q ss_pred eccccc-ccchhhhHhHhhhCCeeEEeecCC
Q 023717 124 SAGIKS-ILDIPRTLEYLETHGVCVAAYKTN 153 (278)
Q Consensus 124 caG~Ks-ILDi~~TLE~LET~GV~V~gy~t~ 153 (278)
|--++. +=++.+-.+.+..+||.|+|+..+
T Consensus 53 Cp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 53 CGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred CCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 445553 224555555667789999998643
No 206
>PRK11478 putative lyase; Provisional
Probab=26.59 E-value=70 Score=24.55 Aligned_cols=36 Identities=28% Similarity=0.548 Sum_probs=24.3
Q ss_pred chhhhHhHhhhCCeeEEeecCCCCc----ceeecCCCCcc
Q 023717 132 DIPRTLEYLETHGVCVAAYKTNEFP----AFFTETSGSKV 167 (278)
Q Consensus 132 Di~~TLE~LET~GV~V~gy~t~~fP----aFy~~~Sg~~~ 167 (278)
|+.++.++|+..|+++...+.+.++ .||.--+|..+
T Consensus 85 d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~i 124 (129)
T PRK11478 85 DIDAAVAHLESHNVKCEAIRVDPYTQKRFTFFNDPDGLPL 124 (129)
T ss_pred CHHHHHHHHHHcCCeeeccccCCCCCCEEEEEECCCCCEE
Confidence 7899999999999998755443332 24444445443
No 207
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=26.59 E-value=3.2e+02 Score=26.04 Aligned_cols=121 Identities=18% Similarity=0.297 Sum_probs=75.3
Q ss_pred CCccccccccch------hhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCcceeecCCCCccCcccCCH
Q 023717 101 HGEHTMDISSDL------TELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSP 174 (278)
Q Consensus 101 g~~~t~DiSaDL------~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~~~~~r~d~~ 174 (278)
|+..-.||-+|- .+++.-||||=+-=++.+++ -- ..|.-.+=.| .|..||.. .|.-+.
T Consensus 39 ggAt~vDIAadp~LV~~~~~~s~lPICVSaVep~~f~~------aV-~AGAdliEIG--NfDsFY~q-------Gr~f~a 102 (242)
T PF04481_consen 39 GGATFVDIAADPELVKLAKSLSNLPICVSAVEPELFVA------AV-KAGADLIEIG--NFDSFYAQ-------GRRFSA 102 (242)
T ss_pred cCCceEEecCCHHHHHHHHHhCCCCeEeecCCHHHHHH------HH-HhCCCEEEec--chHHHHhc-------CCeecH
Confidence 334566887773 35778899986555444432 11 2344444443 89999965 355567
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEeCCCccCCCChHHHHHHHHHHHHHHHH------cCCCCccCChHHHHHHHHH
Q 023717 175 EDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREARE------KNITGNAETPFLLARVNEL 242 (278)
Q Consensus 175 ~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~~~i~~~i~~Al~ea~~------~gi~Gk~vTPflL~~i~el 242 (278)
+|+-++-+.-++| | .-+.+++-||.-..+|. +--+.+.|.++.. -|.+-+..+|=.|.-|.+.
T Consensus 103 ~eVL~Lt~~tR~L-L-P~~~LsVTVPHiL~ld~---Qv~LA~~L~~~GaDiIQTEGgtss~p~~~g~lglIeka 171 (242)
T PF04481_consen 103 EEVLALTRETRSL-L-PDITLSVTVPHILPLDQ---QVQLAEDLVKAGADIIQTEGGTSSKPTSPGILGLIEKA 171 (242)
T ss_pred HHHHHHHHHHHHh-C-CCCceEEecCccccHHH---HHHHHHHHHHhCCcEEEcCCCCCCCCCCcchHHHHHHH
Confidence 8888888877776 3 44577888888877776 5556666665532 2334455566666655543
No 208
>PRK11178 uridine phosphorylase; Provisional
Probab=26.23 E-value=5.2e+02 Score=23.79 Aligned_cols=161 Identities=18% Similarity=0.259 Sum_probs=76.1
Q ss_pred cCCHHHHHHHHhcCCCccccc-ccchHH----------HHhcCCCchhhHHHHHHHHHHCCCcEEEeccc-ccccCCCcc
Q 023717 37 GLSTEELERLAKLGSKAQKTA-RRDIAH----------VVATRGNGATTVSATMFFASMVGIPVFVTGGI-GGVHRHGEH 104 (278)
Q Consensus 37 Gl~~~el~~la~~~~~~~K~s-rRDl~~----------~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGI-GGVHrg~~~ 104 (278)
+-.++|.+.|++.=++..+.+ .|.+.+ .+....-|..-.|.++......|.+.+.--|. ||+..+ -.
T Consensus 23 ~g~p~e~~~ia~~l~~~~~~~~~~~~~~~~G~~~g~~v~v~~~GiG~~~Aa~~~~eLi~~g~~~iI~~GtaG~l~~~-l~ 101 (251)
T PRK11178 23 PGDPERVEKIAALMDNPVFLASHREFTSWRAELDGKPVIVCSTGIGGPSTSIAVEELAQLGVRTFLRIGTTGAIQPH-IN 101 (251)
T ss_pred CCCHHHHHHHHHHhccchheeeccCeEEEEEEEcCEEEEEEecCCCHHHHHHHHHHHHHcCCCEEEEEeccccCCCC-CC
Confidence 345788888875423333333 454333 34444556655555554444568888775555 444332 12
Q ss_pred cccc--ccchhhhcCCCeEEEecccccccch---hhhHhHhhhCCeeEEeecCCCCcceeecCCCCcc---------C--
Q 023717 105 TMDI--SSDLTELGRTPVAVVSAGIKSILDI---PRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKV---------P-- 168 (278)
Q Consensus 105 t~Di--SaDL~eL~rtpV~VVcaG~KsILDi---~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~~~---------~-- 168 (278)
..|+ +......-.+.---.-...-...|. +.-++.++.+|+++.-=.+-.-..||....-..- |
T Consensus 102 ~GDvVI~~~a~~~Dg~s~~y~~~~~p~~~~~~~~~~L~~~~~~~~~~~~~G~i~S~D~Fy~~~~~~~~~~~~i~~~~~~~ 181 (251)
T PRK11178 102 VGDVLVTTASVRLDGASLHFAPLEFPAVADFECTTALVEAAKSIGATTHVGVTASSDTFYPGQERYDTYSGRVVRRFKGS 181 (251)
T ss_pred CCCEEEecceecCCCCccccCCCCcCCCCCHHHHHHHHHHHHHcCCCEEEEEEeecCcccCCCCccccccccchhhHHHH
Confidence 2222 1111000000000000000011233 3345566777887653224445677864432210 0
Q ss_pred -------cccCCHHHHHHHHHHHHhcCCCCeEEEEeC
Q 023717 169 -------CRVDSPEDCARLIDVNMKLKLGSGLVIGVP 198 (278)
Q Consensus 169 -------~r~d~~~e~A~~~~~~~~l~l~~g~lvanP 198 (278)
.-+.-.=|.|.+.+....+|++.|.+..+.
T Consensus 182 ~~~~~~~g~~avEMEsAAla~va~~~gv~a~~v~~~~ 218 (251)
T PRK11178 182 MEEWQAMGVMNYEMESATLLTMCASQGLRAGMVAGVI 218 (251)
T ss_pred HHHHHHcCCeEEehhHHHHHHHHHHcCCcEEEEEEEE
Confidence 111122378888998889999988654433
No 209
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=26.15 E-value=5e+02 Score=23.63 Aligned_cols=86 Identities=20% Similarity=0.191 Sum_probs=53.2
Q ss_pred HHHHHHCCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccc--cccchhhhHhHhhhCCeeEEeecCCCCc
Q 023717 79 MFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIK--SILDIPRTLEYLETHGVCVAAYKTNEFP 156 (278)
Q Consensus 79 m~lA~~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~K--sILDi~~TLE~LET~GV~V~gy~t~~fP 156 (278)
...|..+|.....|..- + ..+.=..+.+..+.|| |..-|+| +.-|....++.+-..|+.=+.++..
T Consensus 162 ~~~a~~~GADyikt~~~-----~---~~~~l~~~~~~~~iPV-va~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~--- 229 (258)
T TIGR01949 162 ARLGAELGADIVKTPYT-----G---DIDSFRDVVKGCPAPV-VVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRN--- 229 (258)
T ss_pred HHHHHHHCCCEEeccCC-----C---CHHHHHHHHHhCCCcE-EEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhH---
Confidence 45666789998888632 1 2233334444556787 5567787 6677777777777888873333322
Q ss_pred ceeecCCCCccCcccCCHHHHHHHHHHHHhc
Q 023717 157 AFFTETSGSKVPCRVDSPEDCARLIDVNMKL 187 (278)
Q Consensus 157 aFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l 187 (278)
.| +-++|.++++-++....-
T Consensus 230 -i~----------~~~dp~~~~~~l~~~i~~ 249 (258)
T TIGR01949 230 -IF----------QHDDPVGITKAVCKIVHE 249 (258)
T ss_pred -hh----------cCCCHHHHHHHHHHHHhC
Confidence 22 446788888877765443
No 210
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=26.11 E-value=3.2e+02 Score=30.50 Aligned_cols=149 Identities=13% Similarity=0.135 Sum_probs=91.8
Q ss_pred HHHHHHHHHHCCCcEEEecccccccCCCccccccccchh---hhcCCCeEEEecccccc---cchhhhHhHhhhCCeeEE
Q 023717 75 VSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLT---ELGRTPVAVVSAGIKSI---LDIPRTLEYLETHGVCVA 148 (278)
Q Consensus 75 VaaTm~lA~~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~---eL~rtpV~VVcaG~KsI---LDi~~TLE~LET~GV~V~ 148 (278)
.-.-..++..-+++.+.+ ++|| +..++.+.+|. .|....|-++.+++++| -|=.++-++|+..|+|+.
T Consensus 70 ~~~v~~ii~~e~~DaIlp-~~gg-----~~~l~la~~l~~~~~le~~Gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp 143 (1050)
T TIGR01369 70 PEAVEKIIEKERPDAILP-TFGG-----QTALNLAVELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVP 143 (1050)
T ss_pred HHHHHHHHHHhCCCEEEE-CCCC-----hhHHHHHhhHHHHhHHHHCCCEEECCCHHHHHHhCCHHHHHHHHHHCCCCCC
Confidence 344556777788876665 3332 22334443333 24445577778888777 677888999999999998
Q ss_pred eecC--C-----------CCcceeecCCCCc--cCcccCCHHHHHHHHHHHHhc-------------CC----------C
Q 023717 149 AYKT--N-----------EFPAFFTETSGSK--VPCRVDSPEDCARLIDVNMKL-------------KL----------G 190 (278)
Q Consensus 149 gy~t--~-----------~fPaFy~~~Sg~~--~~~r~d~~~e~A~~~~~~~~l-------------~l----------~ 190 (278)
-|.. + .||.+.-+..|.. =-+.+++++|+.+.+...... |. .
T Consensus 144 ~~~~v~s~~e~~~~~~~igyPvIVKP~~g~gg~Gv~iv~~~eeL~~~~~~~~~~s~~~~vlVEe~I~G~~Eiev~v~rd~ 223 (1050)
T TIGR01369 144 ESEIAHSVEEALAAAKEIGYPVIVRPAFTLGGTGGGIAYNREELKEIAERALSASPINQVLVEKSLAGWKEIEYEVMRDS 223 (1050)
T ss_pred CeeecCCHHHHHHHHHHhCCCeEEECCCCCCCCCeEEECCHHHHHHHHHHHHhcCCCCcEEEEEcccCceEEEEEEEEeC
Confidence 8863 1 2777776654332 235788999987775543321 11 0
Q ss_pred CeEEEEeCCCcc-----------------CCCChHHHHHHHHHHHHHHHHcCCCCc
Q 023717 191 SGLVIGVPIPRE-----------------HAASGRVIESAIQSALREAREKNITGN 229 (278)
Q Consensus 191 ~g~lvanPiP~e-----------------~~~~~~~i~~~i~~Al~ea~~~gi~Gk 229 (278)
.|-.+..|.-+. ..++++..+++.+.|.+-+++-|+.|-
T Consensus 224 ~g~~~~~~~~e~~~p~gvh~g~~i~v~Pa~tl~~~~~~~l~~~a~~i~~~Lg~~G~ 279 (1050)
T TIGR01369 224 NDNCITVCNMENFDPMGVHTGDSIVVAPSQTLTDKEYQMLRDASIKIIRELGIEGG 279 (1050)
T ss_pred CCCEEEEeeceeccCcceecCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCcce
Confidence 111111111111 126677788899999999999999875
No 211
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=25.81 E-value=5.1e+02 Score=23.57 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=40.0
Q ss_pred HHHHHHHHCCCc-EEEeccccc-----ccCCCccccccc----cchhhhc---CCCeEEEecccccccchhhhHhHhhhC
Q 023717 77 ATMFFASMVGIP-VFVTGGIGG-----VHRHGEHTMDIS----SDLTELG---RTPVAVVSAGIKSILDIPRTLEYLETH 143 (278)
Q Consensus 77 aTm~lA~~aGI~-VFaTGGIGG-----VHrg~~~t~DiS----aDL~eL~---rtpV~VVcaG~KsILDi~~TLE~LET~ 143 (278)
.+..+|+..|++ |++|..--- -..|+...+|.. ..+.++. ...+++-|+|.++.+ ...+..|...
T Consensus 178 ~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~--~~~~~~l~~~ 255 (339)
T cd08239 178 GALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGNTAAR--RLALEAVRPW 255 (339)
T ss_pred HHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCCHHHH--HHHHHHhhcC
Confidence 456788999999 998853100 000222223322 1233332 356888899987653 4557788888
Q ss_pred CeeE
Q 023717 144 GVCV 147 (278)
Q Consensus 144 GV~V 147 (278)
|.-|
T Consensus 256 G~~v 259 (339)
T cd08239 256 GRLV 259 (339)
T ss_pred CEEE
Confidence 8655
No 212
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=25.61 E-value=1.7e+02 Score=28.91 Aligned_cols=67 Identities=22% Similarity=0.392 Sum_probs=46.7
Q ss_pred CCcceeecCCCCccC-------cccCCHHHHHHHHHHHHhcCCCCeEEEEeCCCc-c------CCCChHHHHHHHHHHHH
Q 023717 154 EFPAFFTETSGSKVP-------CRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPR-E------HAASGRVIESAIQSALR 219 (278)
Q Consensus 154 ~fPaFy~~~Sg~~~~-------~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~-e------~~~~~~~i~~~i~~Al~ 219 (278)
-+|-|...+.+.+.| +|+ +.+.+.+.+..-+++|+++=+||.+|-.+ . .+.++ +.++.+|++
T Consensus 24 I~PlFV~eg~~~~~~I~smPG~~r~-s~d~l~~~~~~~~~~Gi~~v~LFgv~~~~~Kd~~~gs~a~~~---~g~v~~air 99 (320)
T cd04824 24 IYPIFITDNPDAKQPIDSLPGINRY-GVNRLEEFLRPLVAKGLRSVILFGVPLKPGKDDRSGSAADDE---DGPVIQAIK 99 (320)
T ss_pred eeeEEEecCCCCccccCCCCCceee-CHHHHHHHHHHHHHCCCCEEEEeCCCccccCCcCccccccCC---CChHHHHHH
Confidence 468888777665433 233 57788999999999999999999886442 1 12333 667778877
Q ss_pred HHHHc
Q 023717 220 EAREK 224 (278)
Q Consensus 220 ea~~~ 224 (278)
.-++.
T Consensus 100 ~iK~~ 104 (320)
T cd04824 100 LIREE 104 (320)
T ss_pred HHHHh
Confidence 77654
No 213
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=25.43 E-value=3.3e+02 Score=25.12 Aligned_cols=139 Identities=17% Similarity=0.220 Sum_probs=82.8
Q ss_pred HHHHHHCCCcEEEecccccccCCCccccccc-cchhhhcC-CCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCc
Q 023717 79 MFFASMVGIPVFVTGGIGGVHRHGEHTMDIS-SDLTELGR-TPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFP 156 (278)
Q Consensus 79 m~lA~~aGI~VFaTGGIGGVHrg~~~t~DiS-aDL~eL~r-tpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fP 156 (278)
..+|...|-+.|--||-=||+ .++|-- +-+.+..+ -||++-=+.+-.| +..+.
T Consensus 18 ~~~~~~~gtdai~vGGS~~v~----~~~~~~~~~ik~~~~~~Pvilfp~~~~~i---------------------~~~aD 72 (219)
T cd02812 18 AKLAEESGTDAIMVGGSDGVS----STLDNVVRLIKRIRRPVPVILFPSNPEAV---------------------SPGAD 72 (219)
T ss_pred HHHHHhcCCCEEEECCccchh----hhHHHHHHHHHHhcCCCCEEEeCCCcccc---------------------CcCCC
Confidence 345555777777777777765 244422 33334444 5555554444333 34577
Q ss_pred ceeecC--CCCccCcccCCHHHHHHHHHH--HHhcCCCCeEEEEeCCCccCCCChH----HHHHHHHHHHHHHHHcCC--
Q 023717 157 AFFTET--SGSKVPCRVDSPEDCARLIDV--NMKLKLGSGLVIGVPIPREHAASGR----VIESAIQSALREAREKNI-- 226 (278)
Q Consensus 157 aFy~~~--Sg~~~~~r~d~~~e~A~~~~~--~~~l~l~~g~lvanPiP~e~~~~~~----~i~~~i~~Al~ea~~~gi-- 226 (278)
+||+.+ ++-...|-+..-.+.+..+.. .|.--++.|-+|.||=..--.+... ..+.+..-|+ -|+.-|+
T Consensus 73 a~l~~svlns~n~~~i~g~~~~~~~~~~~~~~~~e~i~~gYiv~~~~~~v~~v~~a~~~~~~e~~~ayA~-aae~~g~~i 151 (219)
T cd02812 73 AYLFPSVLNSGDPYWIIGAQAEAAPEVGKIIPWLELIPEGYLVLNPDSTVARVTGAKTDLKPEDAAAYAL-AAEYLGMPI 151 (219)
T ss_pred EEEEEeeecCCCchHHHHHHHHHHHHhccccccccccceEEEEECCCCceeeeeccCcCCCHHHHHHHHH-HHHHcCCeE
Confidence 777765 343455666666778887777 6666688899999996543322222 1233333332 2344344
Q ss_pred -----CCccCChHHHHHHHHHh
Q 023717 227 -----TGNAETPFLLARVNELT 243 (278)
Q Consensus 227 -----~Gk~vTPflL~~i~elT 243 (278)
+|..+.|-+++++.+.+
T Consensus 152 vyLe~SG~~~~~e~I~~v~~~~ 173 (219)
T cd02812 152 VYLEYSGAYGPPEVVRAVKKVL 173 (219)
T ss_pred EEeCCCCCcCCHHHHHHHHHhc
Confidence 58888899999999987
No 214
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=25.28 E-value=1.6e+02 Score=24.34 Aligned_cols=43 Identities=16% Similarity=0.157 Sum_probs=26.7
Q ss_pred eEEEecccccccchhhhHhHhhhCCeeEEeecCCCCcceeecC
Q 023717 120 VAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTET 162 (278)
Q Consensus 120 V~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~ 162 (278)
+-|-|+|...====|.+++.|+.+|+++-+.....+..+....
T Consensus 27 ~~v~SaG~~~~~~~~~a~~~l~e~Gid~~~~~~~~l~~~~~~~ 69 (129)
T TIGR02691 27 WEVYSAGIEAHGLNPNAVKAMKEVGIDISNQTSDLIDLDILNK 69 (129)
T ss_pred EEEEcCCCCCCCcCHHHHHHHHHcCCCcCCcccccCChhhccc
Confidence 4445555321011388999999999999777655555444443
No 215
>TIGR03432 yjhG_yagF probable dehydratase, YjhG/YagF family. This homolog of dihydroxy-acid dehydratases has an odd, sparse distribution. Members are found in two Acidobacteria, two Planctomycetes, Bacillus clausii KSM-K16, and (in two copies each) in strains K12-MG1655 and W3110 of Escherichia coli. The local context is not well conserved, but a few members are adjacent to homologs of the gluconate:H+ symporter (see TIGR00791).
Probab=25.06 E-value=1.2e+02 Score=32.50 Aligned_cols=76 Identities=26% Similarity=0.352 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHCCCccc---EEEEEcCcee--ecCCHHHHHHHHhcCCCcccccccchHHHH-----hcC-CCch---
Q 023717 7 FETAKEVEAIVRNNGAVPA---TIAILEGLPC--VGLSTEELERLAKLGSKAQKTARRDIAHVV-----ATR-GNGA--- 72 (278)
Q Consensus 7 le~A~~~E~~vR~~GavPA---TIaii~G~i~--VGl~~~el~~la~~~~~~~K~srRDl~~~~-----a~~-~~Ga--- 72 (278)
-++++.+.+-|+++|.+|- ||++-||.-. -||. --=.||-+++..+ +.. .+|-
T Consensus 87 ~~l~~~vk~gi~~aGg~P~ef~ti~vcDGia~G~~GM~-------------ySL~sRelIA~siE~~v~ah~~~DgvV~i 153 (640)
T TIGR03432 87 GLLMKAAAEEIKRDGAVPFAGFVSDPCDGRTQGTTGMF-------------DSLPYRNDAAMVMRRLIRSLPTRKGVIGI 153 (640)
T ss_pred HHHHHHHHHHHHHcCceeEEeCCCCccCccccCCCcce-------------echhhHHHHHHHHHHHHhccCcCCeEEEe
Confidence 4789999999999999996 5677787532 2221 1123444444333 333 3443
Q ss_pred ----hhHHH-HHHHHHHCCCc-EEEeccc
Q 023717 73 ----TTVSA-TMFFASMVGIP-VFVTGGI 95 (278)
Q Consensus 73 ----TTVaa-Tm~lA~~aGI~-VFaTGGI 95 (278)
-|+=| -|.+|++..|| ||++||-
T Consensus 154 ~~CDK~~PgmlMAaa~rlniPsI~V~GGp 182 (640)
T TIGR03432 154 ATCDKGLPAMMMALAATHHLPTVLVPGGV 182 (640)
T ss_pred CcCCCchHHHHHHHHHhCCCCEEEEeCCC
Confidence 23444 44445679998 8999983
No 216
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=24.98 E-value=1.6e+02 Score=27.34 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=26.2
Q ss_pred CCCChHHHHHHHHHHHH---HHHHcCCCCccCC---hHHHHH
Q 023717 203 HAASGRVIESAIQSALR---EAREKNITGNAET---PFLLAR 238 (278)
Q Consensus 203 ~~~~~~~i~~~i~~Al~---ea~~~gi~Gk~vT---PflL~~ 238 (278)
.+|+.++|+++|++-.+ .|++.|..|=+++ .||+..
T Consensus 129 ~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~q 170 (327)
T cd02803 129 REMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQ 170 (327)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHH
Confidence 46999999999986554 4556788887776 566654
No 217
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=24.96 E-value=2.9e+02 Score=26.30 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=20.9
Q ss_pred CCCeEEEecccccccchhhhHhHhhhCCeeEEeec
Q 023717 117 RTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYK 151 (278)
Q Consensus 117 rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~ 151 (278)
..|+..+|-|...+ +|++...|+-++++.
T Consensus 239 ~~~ilh~cg~~~~~------~~~~~~~~~~~is~d 267 (346)
T PRK00115 239 DVPVILFGKGAGEL------LEAMAETGADVVGLD 267 (346)
T ss_pred CCCEEEEcCCcHHH------HHHHHhcCCCEEeeC
Confidence 46788889887765 556666788877664
No 218
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=24.95 E-value=1.9e+02 Score=28.41 Aligned_cols=66 Identities=21% Similarity=0.341 Sum_probs=47.0
Q ss_pred CCcceeecCCCCccC-------cccCCHHHHHHHHHHHHhcCCCCeEEEEeCCCccC-----CCChHHHHHHHHHHHHHH
Q 023717 154 EFPAFFTETSGSKVP-------CRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREH-----AASGRVIESAIQSALREA 221 (278)
Q Consensus 154 ~fPaFy~~~Sg~~~~-------~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~-----~~~~~~i~~~i~~Al~ea 221 (278)
-+|-|...+.+.+.| +|+ +.+.+.+.+..-+++|+++=+||.+|- ..+ +.++ +..+.+|++..
T Consensus 24 I~PlFV~eg~~~~~~I~sMPG~~r~-s~d~l~~~~~~~~~~Gi~~v~LFgv~~-~Kd~~gs~A~~~---~g~v~~air~i 98 (314)
T cd00384 24 IYPLFVVEGIDEKEEISSMPGVYRL-SVDSLVEEAEELADLGIRAVILFGIPE-HKDEIGSEAYDP---DGIVQRAIRAI 98 (314)
T ss_pred eeeEEEecCCCCccccCCCCCceee-CHHHHHHHHHHHHHCCCCEEEEECCCC-CCCCCcccccCC---CChHHHHHHHH
Confidence 468888877655433 233 578889999999999999999998862 222 3334 56788888877
Q ss_pred HHc
Q 023717 222 REK 224 (278)
Q Consensus 222 ~~~ 224 (278)
++.
T Consensus 99 K~~ 101 (314)
T cd00384 99 KEA 101 (314)
T ss_pred HHh
Confidence 765
No 219
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=24.80 E-value=2.5e+02 Score=26.60 Aligned_cols=22 Identities=27% Similarity=0.601 Sum_probs=20.4
Q ss_pred CCCchhHHHHHHHHHHHHHCCC
Q 023717 1 MPYPQNFETAKEVEAIVRNNGA 22 (278)
Q Consensus 1 lPyP~Nle~A~~~E~~vR~~Ga 22 (278)
+|+.+|++.++++-+..+..|+
T Consensus 108 l~~~eni~~t~~v~~~a~~~gv 129 (282)
T TIGR01859 108 LPFEENLALTKKVVEIAHAKGV 129 (282)
T ss_pred CCHHHHHHHHHHHHHHHHHcCC
Confidence 6889999999999999999996
No 220
>PRK00347 putative DNA-binding transcriptional regulator; Reviewed
Probab=24.68 E-value=40 Score=31.27 Aligned_cols=78 Identities=19% Similarity=0.184 Sum_probs=49.8
Q ss_pred HhhhCCeeEEeecCCCCcceeecCCCCccCcccCCHHHHHHHHHHHHhcCCCCeEEEEeCCCcc-CCCChHHHHHHHHHH
Q 023717 139 YLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPRE-HAASGRVIESAIQSA 217 (278)
Q Consensus 139 ~LET~GV~V~gy~t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e-~~~~~~~i~~~i~~A 217 (278)
|+|..||+.+-=+...||-=.|.. -.-..+|.+++.. -|....+||.+=-|.- .=.+..++|....++
T Consensus 132 ~vEVKsvtL~~~~~A~FPDapT~R-------G~kHl~eL~~l~~----~G~ra~vlFvvqr~d~~~F~P~~~~Dp~fa~~ 200 (234)
T PRK00347 132 YVEVKSVTLEENGLAMFPDAVTER-------GQKHLRELIELAK----EGHRAVLLFLVQRSDIKRFSPADEIDPKYAEL 200 (234)
T ss_pred EEEEcCEEeCCCCEEECCCCCcHH-------HHHHHHHHHHHHH----CCCcEEEEEEEeCCCCCEEeECcccCHHHHHH
Confidence 999999976522355666522111 1122344444333 2778888888766642 233556788999999
Q ss_pred HHHHHHcCCC
Q 023717 218 LREAREKNIT 227 (278)
Q Consensus 218 l~ea~~~gi~ 227 (278)
+.+|.++|+.
T Consensus 201 l~~A~~~GV~ 210 (234)
T PRK00347 201 LREAVKAGVE 210 (234)
T ss_pred HHHHHHCCCE
Confidence 9999999985
No 221
>PF14601 TFX_C: DNA_binding protein, TFX, C-term; PDB: 1NR3_A.
Probab=24.38 E-value=1.4e+02 Score=23.77 Aligned_cols=50 Identities=24% Similarity=0.315 Sum_probs=33.6
Q ss_pred CCCeEEEEeCCCccCCCChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHHHHhCC
Q 023717 189 LGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGG 245 (278)
Q Consensus 189 l~~g~lvanPiP~e~~~~~~~i~~~i~~Al~ea~~~gi~Gk~vTPflL~~i~elT~G 245 (278)
+.+.+.+..| .+..+-++-+.-.++|++.||+=++-||=|+.+|.+....
T Consensus 11 l~Apv~i~i~-------~GtDl~diP~~if~~aDe~gIKV~y~t~~li~~i~~~a~~ 60 (84)
T PF14601_consen 11 LNAPVRITIP-------AGTDLFDIPEIIFKEADEAGIKVRYDTPELINFIREAAPD 60 (84)
T ss_dssp H---EEEEE---------GGGHHHHHHHHHHHHHHHS-S----HHHHHHHHHHH-SS
T ss_pred cCCCEEEEEc-------CCCcHHHhHHHHHHHHhHcCCeeccCHHHHHHHHHHhchh
Confidence 4566667666 4677888999999999999999999999999999987663
No 222
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=24.27 E-value=66 Score=28.68 Aligned_cols=56 Identities=18% Similarity=0.183 Sum_probs=38.1
Q ss_pred cccccCCCccccccccchhhhcCCCeEEEeccccc-ccchhhhHhHhhhCCeeEEee
Q 023717 95 IGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKS-ILDIPRTLEYLETHGVCVAAY 150 (278)
Q Consensus 95 IGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~Ks-ILDi~~TLE~LET~GV~V~gy 150 (278)
|.|++.....+-|.-+++..=++-|+++|-.|++. ==-..+-.|..|..|+||+.-
T Consensus 13 ~~g~~~a~~~~p~~aa~lI~~AKrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT 69 (171)
T PRK00945 13 ISGPKHAKIVSPKIAAMMIKKAKRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAAT 69 (171)
T ss_pred ccCcccccccCHHHHHHHHHhCCCcEEEECcCccccchHHHHHHHHHHHHCCCEEEc
Confidence 34555544445566667777788999999998876 111334677888899999854
No 223
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=24.26 E-value=2.8e+02 Score=24.77 Aligned_cols=68 Identities=13% Similarity=0.063 Sum_probs=37.2
Q ss_pred HHHHHHHHCCCcEEEeccccccc-----CCCcccc-----ccccchhhhcC--CCeEEEecccccccchhhhHhHhhhCC
Q 023717 77 ATMFFASMVGIPVFVTGGIGGVH-----RHGEHTM-----DISSDLTELGR--TPVAVVSAGIKSILDIPRTLEYLETHG 144 (278)
Q Consensus 77 aTm~lA~~aGI~VFaTGGIGGVH-----rg~~~t~-----DiSaDL~eL~r--tpV~VVcaG~KsILDi~~TLE~LET~G 144 (278)
..+.+|+..|++|++|..----+ .|+...+ |....+.++.. ..+++=|.|.+. +...++.|-..|
T Consensus 159 ~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~~g~~~---~~~~~~~l~~~G 235 (329)
T cd08294 159 LVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYFDNVGGEF---SSTVLSHMNDFG 235 (329)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEECCCHHH---HHHHHHhhccCC
Confidence 44668999999999887421000 0222223 33344444432 335555666543 355677777777
Q ss_pred eeE
Q 023717 145 VCV 147 (278)
Q Consensus 145 V~V 147 (278)
.-|
T Consensus 236 ~iv 238 (329)
T cd08294 236 RVA 238 (329)
T ss_pred EEE
Confidence 644
No 224
>PRK06523 short chain dehydrogenase; Provisional
Probab=24.16 E-value=4.7e+02 Score=22.63 Aligned_cols=17 Identities=35% Similarity=0.661 Sum_probs=13.1
Q ss_pred HCCCcEEEecccccccC
Q 023717 84 MVGIPVFVTGGIGGVHR 100 (278)
Q Consensus 84 ~aGI~VFaTGGIGGVHr 100 (278)
+.|=.|++|||-||+-+
T Consensus 7 ~~~k~vlItGas~gIG~ 23 (260)
T PRK06523 7 LAGKRALVTGGTKGIGA 23 (260)
T ss_pred CCCCEEEEECCCCchhH
Confidence 34567999999999844
No 225
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=24.14 E-value=5.9e+02 Score=25.26 Aligned_cols=18 Identities=39% Similarity=0.361 Sum_probs=10.4
Q ss_pred chhHHHHHHHHHHHHHCC
Q 023717 4 PQNFETAKEVEAIVRNNG 21 (278)
Q Consensus 4 P~Nle~A~~~E~~vR~~G 21 (278)
|.+.++..++=+.+|+.+
T Consensus 115 ~~~p~l~~~ii~~vr~a~ 132 (369)
T TIGR01304 115 PLKPELLGERIAEVRDSG 132 (369)
T ss_pred ccChHHHHHHHHHHHhcc
Confidence 445555555556666654
No 226
>PF03749 SfsA: Sugar fermentation stimulation protein; InterPro: IPR005224 The sugar fermentation stimulation protein is a probable regulatory factor involved in maltose metabolism. It contains a putative DNA-binding domain, and was isolated as a gene which enabled Escherichia coli W3110 (strain MK2001) to use maltose [].
Probab=24.06 E-value=41 Score=30.81 Aligned_cols=78 Identities=24% Similarity=0.318 Sum_probs=52.0
Q ss_pred HhhhCCeeEEeecCCCCcceeecCCCCccCcccCCHHHHHHHHHHHHhcCCCCeEEEEeCCCccCC-CChHHHHHHHHHH
Q 023717 139 YLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHA-ASGRVIESAIQSA 217 (278)
Q Consensus 139 ~LET~GV~V~gy~t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~-~~~~~i~~~i~~A 217 (278)
|+|-.+|+-+--+...||.=.|... .-..+|.+++.+. |....+||.+--|.-.. .+..++|....++
T Consensus 118 ~vEVKsvtL~~~~~a~FPDApT~RG-------~kHL~eL~~l~~~----G~ra~vlFvvqr~d~~~f~p~~~~Dp~fa~~ 186 (215)
T PF03749_consen 118 YVEVKSVTLVEDGIAMFPDAPTERG-------RKHLRELAELAEE----GYRAAVLFVVQRPDAERFRPNREIDPEFAEA 186 (215)
T ss_pred EEEEeeeEeccCCcccCCCccchHH-------HHHHHHHHHHHhc----cCcEEEEEEEECCCCCEEeEChhcCHHHHHH
Confidence 8898998877555566664433222 1123455554443 78888888886665222 3445788999999
Q ss_pred HHHHHHcCCC
Q 023717 218 LREAREKNIT 227 (278)
Q Consensus 218 l~ea~~~gi~ 227 (278)
+.+|.++|+.
T Consensus 187 l~~A~~~GV~ 196 (215)
T PF03749_consen 187 LREAAEAGVE 196 (215)
T ss_pred HHHHHHCCCE
Confidence 9999999985
No 227
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=24.06 E-value=1.3e+02 Score=22.68 Aligned_cols=70 Identities=16% Similarity=0.081 Sum_probs=42.7
Q ss_pred hcCCCchhhHHHHHHHHHH-CCCcEEEecccccccCCCcccccc-------ccchhhhcCCCeEEEecccccccchhhhH
Q 023717 66 ATRGNGATTVSATMFFASM-VGIPVFVTGGIGGVHRHGEHTMDI-------SSDLTELGRTPVAVVSAGIKSILDIPRTL 137 (278)
Q Consensus 66 a~~~~GaTTVaaTm~lA~~-aGI~VFaTGGIGGVHrg~~~t~Di-------SaDL~eL~rtpV~VVcaG~KsILDi~~TL 137 (278)
.+|..|-||+|..+...-. .|.+|.+---=-. +. -.=+|. ...+.+.+..=++++-....|+-...+.+
T Consensus 7 ~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~-~d--~viiD~p~~~~~~~~~~l~~ad~viv~~~~~~~s~~~~~~~~ 83 (104)
T cd02042 7 QKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ-YD--YIIIDTPPSLGLLTRNALAAADLVLIPVQPSPLDLDGLEKLL 83 (104)
T ss_pred CCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC-CC--EEEEeCcCCCCHHHHHHHHHCCEEEEeccCCHHHHHHHHHHH
Confidence 4788999999988766554 8888766421110 00 000122 11334455556777788888888888887
Q ss_pred h
Q 023717 138 E 138 (278)
Q Consensus 138 E 138 (278)
+
T Consensus 84 ~ 84 (104)
T cd02042 84 E 84 (104)
T ss_pred H
Confidence 7
No 228
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=24.03 E-value=1.1e+02 Score=23.93 Aligned_cols=11 Identities=45% Similarity=1.138 Sum_probs=8.6
Q ss_pred cEEEecccccc
Q 023717 88 PVFVTGGIGGV 98 (278)
Q Consensus 88 ~VFaTGGIGGV 98 (278)
.+++|||-||+
T Consensus 2 ~~li~Ga~~~i 12 (180)
T smart00822 2 TYLITGGLGGL 12 (180)
T ss_pred EEEEEcCCChH
Confidence 47888888887
No 229
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=23.90 E-value=93 Score=27.97 Aligned_cols=39 Identities=13% Similarity=0.121 Sum_probs=32.1
Q ss_pred CCCeEEEecccccccchhhhHhHhh-hCCeeEEeecCCCC
Q 023717 117 RTPVAVVSAGIKSILDIPRTLEYLE-THGVCVAAYKTNEF 155 (278)
Q Consensus 117 rtpV~VVcaG~KsILDi~~TLE~LE-T~GV~V~gy~t~~f 155 (278)
+.|++++=+=--.+..=++-++.|. +.|+.++.|+.|++
T Consensus 116 ~rPlvlaPamN~~m~~~~~Ni~~L~~~~g~~~v~f~qd~~ 155 (187)
T TIGR02852 116 NKPVVLAISTNDALGLNAVNLMRLLNTKNIYFVPFGQDDP 155 (187)
T ss_pred CCCEEEEECcCHHHHhCHHHHHHHHHcCCEEEEeecCCCC
Confidence 5788887776666766789999984 99999999998864
No 230
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=23.89 E-value=1.1e+02 Score=29.87 Aligned_cols=71 Identities=24% Similarity=0.297 Sum_probs=55.8
Q ss_pred CCchhhHHHHHHHHHHCCCcEEEecccccccCCCccccccccchhhhcCCCeEEEec--ccccccchhh----hHhHhhh
Q 023717 69 GNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSA--GIKSILDIPR----TLEYLET 142 (278)
Q Consensus 69 ~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVca--G~KsILDi~~----TLE~LET 142 (278)
.|||-|..---.+|.. |++|.+|.+= |. ...+|+|.|+.|+--+|++=++. |-|..=++.+ .||.||.
T Consensus 266 aSGgI~~~ni~~ya~~--vD~isvGs~~--~~--a~~lDis~~iv~~~g~~~~K~~~~~g~~~~~~~~~~~~~~~~~~~~ 339 (343)
T PRK08662 266 VSGGLDPERIRELRDV--VDGFGVGTYI--SF--APPVDFSMDIVEVEGKPIAKRGKLPGIKQVPRLKEIREYVLEQLEE 339 (343)
T ss_pred EeCCCCHHHHHHHHHh--CCEEEcCccc--cC--CCccceEEEEEEECCeeeEeecCCcccccCCCHHHHHHHHHHHHHh
Confidence 3699999888888877 9999777642 43 46899999999999999999998 5587777765 4666777
Q ss_pred CCe
Q 023717 143 HGV 145 (278)
Q Consensus 143 ~GV 145 (278)
.|.
T Consensus 340 ~~~ 342 (343)
T PRK08662 340 LGL 342 (343)
T ss_pred ccC
Confidence 764
No 231
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=23.83 E-value=2.5e+02 Score=22.75 Aligned_cols=76 Identities=17% Similarity=0.138 Sum_probs=38.4
Q ss_pred eEEEecccccccchhhhHhHhhhCCeeEEeecCC--C---CcceeecCC---CCccCcccCCHHHHHHHHHHHHhcCCCC
Q 023717 120 VAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTN--E---FPAFFTETS---GSKVPCRVDSPEDCARLIDVNMKLKLGS 191 (278)
Q Consensus 120 V~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~--~---fPaFy~~~S---g~~~~~r~d~~~e~A~~~~~~~~l~l~~ 191 (278)
|+||-+..+-=-==.+.+.+|..+|.+|+..+.. + .+.|=+-.. .+.+=.-+-.++.+.++++.-.++|.+.
T Consensus 3 iAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~g~~~ 82 (116)
T PF13380_consen 3 IAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAALGVKA 82 (116)
T ss_dssp EEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHHT-SE
T ss_pred EEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHcCCCE
Confidence 4555544331111245678888899999888732 2 344433331 1111122336778888888888888665
Q ss_pred eEEE
Q 023717 192 GLVI 195 (278)
Q Consensus 192 g~lv 195 (278)
-+++
T Consensus 83 v~~~ 86 (116)
T PF13380_consen 83 VWLQ 86 (116)
T ss_dssp EEE-
T ss_pred EEEE
Confidence 4443
No 232
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=23.74 E-value=2.4e+02 Score=26.99 Aligned_cols=126 Identities=11% Similarity=0.067 Sum_probs=75.9
Q ss_pred CCchhhHHHHHHHHHHCCCcEEEecccccccCCCcccc--ccccch--------hhhcCCCeEEEecccccccchhhhHh
Q 023717 69 GNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTM--DISSDL--------TELGRTPVAVVSAGIKSILDIPRTLE 138 (278)
Q Consensus 69 ~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrg~~~t~--DiSaDL--------~eL~rtpV~VVcaG~KsILDi~~TLE 138 (278)
-+...++.+..-+|...+||.+.+..- ......| -+..++ ..++=..|+++.--...+.=+..-++
T Consensus 70 p~ss~~~~~v~~i~~~~~IP~I~~~~~----~~~~~~f~i~~~p~~~~a~~~~i~~~~wk~vaiiYd~~~~~~~lq~l~~ 145 (371)
T cd06388 70 LYDKRSVHTLTSFCSALHISLITPSFP----TEGESQFVLQLRPSLRGALLSLLDHYEWNRFVFLYDTDRGYSILQAIME 145 (371)
T ss_pred cCCHHHHHHHHHHhhCCCCCeeecCcc----ccCCCceEEEeChhhhhHHHHHHHhcCceEEEEEecCCccHHHHHHHHH
Confidence 455566777788999999999876543 1112233 222222 33556778888764444444566677
Q ss_pred HhhhCCeeEEeecC-----CCCcceeec--CCCCccCcccCCHHHHHHHHHHHHhcCCCCe---EEEEeC
Q 023717 139 YLETHGVCVAAYKT-----NEFPAFFTE--TSGSKVPCRVDSPEDCARLIDVNMKLKLGSG---LVIGVP 198 (278)
Q Consensus 139 ~LET~GV~V~gy~t-----~~fPaFy~~--~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g---~lvanP 198 (278)
.++..|+.|+.... ++|-..... .++-+.=.---++++++.++++..++|+.+- .++++.
T Consensus 146 ~~~~~g~~v~~~~~~~~~~~d~~~~L~~ik~~~~~~iil~~~~~~~~~il~qa~~~gm~~~~y~~il~~~ 215 (371)
T cd06388 146 KAGQNGWQVSAICVENFNDASYRRLLEDLDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIANL 215 (371)
T ss_pred hhHhcCCeeeeEEeccCCcHHHHHHHHHhcccccEEEEEECCHHHHHHHHHHHHhcCccccceEEEEccC
Confidence 78888988775332 123222221 2222221223378899999999999999776 455665
No 233
>PRK14071 6-phosphofructokinase; Provisional
Probab=23.73 E-value=5.5e+02 Score=25.23 Aligned_cols=91 Identities=15% Similarity=0.239 Sum_probs=51.5
Q ss_pred HHHHHHHCCCcccEEEEEcCc--------eeecCCHHHHHHHHhcCCCcccccccchHHHHhcCC-Cch--hhHHHHHHH
Q 023717 13 VEAIVRNNGAVPATIAILEGL--------PCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRG-NGA--TTVSATMFF 81 (278)
Q Consensus 13 ~E~~vR~~GavPATIaii~G~--------i~VGl~~~el~~la~~~~~~~K~srRDl~~~~a~~~-~Ga--TTVaaTm~l 81 (278)
++...+..|. -.+++.+|- -.+-|+.+++..+...+....+.|||.-++. .+. ++. .-..--...
T Consensus 27 v~~a~~~~g~--~v~G~~~G~~GL~~~~~~~~~l~~~~v~~~~~~GGt~LgtsR~~~~~~--~~~~~~~~~~~~~~~~~~ 102 (360)
T PRK14071 27 VHRARGTYGW--EVIGIRDATQGLMARPPQYIELDLDQVDDLLRMGGTILGTTNKGDPFA--FPMPDGSLRDRSQEIIDG 102 (360)
T ss_pred HHHHHhcCCC--EEEEEecChHHHhcCCCCeEECCHHHHhhHHhCCCceeccCCCCCccc--cccccccchHHHHHHHHH
Confidence 3334333364 467766652 2467999999988776666889998744432 111 111 011223444
Q ss_pred HHHCCCcEEEecccccccCCCccccccccchhh
Q 023717 82 ASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTE 114 (278)
Q Consensus 82 A~~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~e 114 (278)
.+..||..|..= || ..||+....|.+
T Consensus 103 l~~~~Id~Li~I--GG-----dgS~~~a~~L~~ 128 (360)
T PRK14071 103 YHSLGLDALIGI--GG-----DGSLAILRRLAQ 128 (360)
T ss_pred HHHcCCCEEEEE--CC-----hhHHHHHHHHHH
Confidence 567899988873 33 336665544444
No 234
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=23.68 E-value=6.2e+02 Score=23.83 Aligned_cols=133 Identities=16% Similarity=0.168 Sum_probs=78.4
Q ss_pred HHHHHHHHCCCcccEEEEEc--Ccee--ecCCHHHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHHHHHHHHCCC
Q 023717 12 EVEAIVRNNGAVPATIAILE--GLPC--VGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGI 87 (278)
Q Consensus 12 ~~E~~vR~~GavPATIaii~--G~i~--VGl~~~el~~la~~~~~~~K~srRDl~~~~a~~~~GaTTVaaTm~lA~~aGI 87 (278)
.+-+.+.+.|+. .|+|.| |-+. =||+.++|+.|.+..+ .+-|+ +... .....|++.++.-=++ ..-.
T Consensus 52 ~~a~~L~e~Gak--vvaVsD~~G~i~~~~Gld~~~l~~l~~~~~--~~~~~--v~~~-~~~~~~a~~~~~~~~~--~~~~ 122 (254)
T cd05313 52 YAAEKLLELGAK--VVTLSDSKGYVYDPDGFTGEKLAELKEIKE--VRRGR--VSEY-AKKYGTAKYFEGKKPW--EVPC 122 (254)
T ss_pred HHHHHHHHCCCE--EEEEECCCceEECCCCCCHHHHHHHHHHHH--hcCCc--HHHH-hhcCCCCEEeCCcchh--cCCC
Confidence 334445557765 455554 3222 2888888877754211 11111 2211 2222245665443333 2357
Q ss_pred cEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCcceeecCCCCcc
Q 023717 88 PVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKV 167 (278)
Q Consensus 88 ~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~~~ 167 (278)
+||+=+.++++=.. |. ...|-+...-+|+-|+.-=+.- .--+.|+..||.|+ |.|+...-|+-+
T Consensus 123 DIliPcAl~~~I~~-----~n---a~~i~~~~ak~I~EgAN~p~t~-~a~~~L~~rGI~vv-------PD~laNaGGViv 186 (254)
T cd05313 123 DIAFPCATQNEVDA-----ED---AKLLVKNGCKYVAEGANMPCTA-EAIEVFRQAGVLFA-------PGKAANAGGVAV 186 (254)
T ss_pred cEEEeccccccCCH-----HH---HHHHHHcCCEEEEeCCCCCCCH-HHHHHHHHCCcEEE-------CchhhcCCCeee
Confidence 79999999986331 11 1223333566677777666655 67789999999998 999999999988
Q ss_pred Cc
Q 023717 168 PC 169 (278)
Q Consensus 168 ~~ 169 (278)
.|
T Consensus 187 s~ 188 (254)
T cd05313 187 SG 188 (254)
T ss_pred eH
Confidence 66
No 235
>PRK06701 short chain dehydrogenase; Provisional
Probab=23.64 E-value=5.6e+02 Score=23.26 Aligned_cols=50 Identities=26% Similarity=0.420 Sum_probs=29.0
Q ss_pred CCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCC
Q 023717 86 GIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHG 144 (278)
Q Consensus 86 GI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~G 144 (278)
|=.+++|||-||+-+ .+..-|.+.+ ..|++++-...+ +.....+.++..|
T Consensus 46 ~k~iLItGasggIG~------~la~~l~~~G-~~V~l~~r~~~~--~~~~~~~~~~~~~ 95 (290)
T PRK06701 46 GKVALITGGDSGIGR------AVAVLFAKEG-ADIAIVYLDEHE--DANETKQRVEKEG 95 (290)
T ss_pred CCEEEEeCCCcHHHH------HHHHHHHHCC-CEEEEEeCCcch--HHHHHHHHHHhcC
Confidence 557999999999933 6777666654 345555443211 3344445555443
No 236
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=23.58 E-value=4.7e+02 Score=22.37 Aligned_cols=66 Identities=20% Similarity=0.156 Sum_probs=40.0
Q ss_pred HHHHHHHHCCCcEEEecccccccCCCccccccccchhhhcCCCe-EEEecccccccchhhhHhHhhhCCeeEEeecC
Q 023717 77 ATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPV-AVVSAGIKSILDIPRTLEYLETHGVCVAAYKT 152 (278)
Q Consensus 77 aTm~lA~~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV-~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t 152 (278)
+-...+...|+.+.... .....-+...-+..|.+..| .++..+.++ -+..++.|+.+|+||+.+.+
T Consensus 20 ~i~~~~~~~g~~~~~~~-------~~~~~~~~~~~~~~l~~~~vdgiii~~~~~---~~~~~~~l~~~~iPvv~~~~ 86 (268)
T cd06273 20 AFQETLAAHGYTLLVAS-------SGYDLDREYAQARKLLERGVDGLALIGLDH---SPALLDLLARRGVPYVATWN 86 (268)
T ss_pred HHHHHHHHCCCEEEEec-------CCCCHHHHHHHHHHHHhcCCCEEEEeCCCC---CHHHHHHHHhCCCCEEEEcC
Confidence 33455677899888732 11111122333445666554 555566543 24668899999999999875
No 237
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=23.57 E-value=5e+02 Score=24.34 Aligned_cols=59 Identities=12% Similarity=0.097 Sum_probs=33.2
Q ss_pred Eecccccc-----cCCCccccccccch-hhhcCC-CeEEEecccccccchhhhHhHhhhCCeeEEeec
Q 023717 91 VTGGIGGV-----HRHGEHTMDISSDL-TELGRT-PVAVVSAGIKSILDIPRTLEYLETHGVCVAAYK 151 (278)
Q Consensus 91 aTGGIGGV-----Hrg~~~t~DiSaDL-~eL~rt-pV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~ 151 (278)
+.|||+|. -+..+...+.+.+. .+|-.. .|.+|. |.-| =.....+++++..+||+++..
T Consensus 32 a~GGI~Gr~ielv~~D~~~~p~~a~~~a~~Li~~~~V~~i~-~~~S-~~~~a~~~~~~~~~vp~i~~~ 97 (351)
T cd06334 32 EDGGINGVKLEWEECDTGYEVPRGVECYERLKGEDGAVAFQ-GWST-GITEALIPKIAADKIPLMSGS 97 (351)
T ss_pred HcCCcCCeEEEEEEecCCCCcHHHHHHHHHHhccCCcEEEe-cCcH-HHHHHhhHHHhhcCCcEEecc
Confidence 45788872 22322233333333 345554 466664 4322 223466789999999999875
No 238
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=23.56 E-value=5.3e+02 Score=25.84 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=9.7
Q ss_pred HHHHHHHHHCCCcEEEec
Q 023717 76 SATMFFASMVGIPVFVTG 93 (278)
Q Consensus 76 aaTm~lA~~aGI~VFaTG 93 (278)
..-+.+|...+|....+|
T Consensus 63 ~~i~~~a~~~~iDaI~pg 80 (478)
T PRK08463 63 KRIVEIAKACGADAIHPG 80 (478)
T ss_pred HHHHHHHHHhCCCEEEEC
Confidence 344556666666555553
No 239
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=23.31 E-value=2.1e+02 Score=24.72 Aligned_cols=55 Identities=18% Similarity=0.154 Sum_probs=34.0
Q ss_pred ccccchhhhHhHhhhCCeeEEeecCCCCcc--eeecC----CCCccCcccCCHHHHHHHHH
Q 023717 128 KSILDIPRTLEYLETHGVCVAAYKTNEFPA--FFTET----SGSKVPCRVDSPEDCARLID 182 (278)
Q Consensus 128 KsILDi~~TLE~LET~GV~V~gy~t~~fPa--Fy~~~----Sg~~~~~r~d~~~e~A~~~~ 182 (278)
+.+-++..-.+.|+.+||.|+|..+|.-.. -|... .++..|.-.|.-.++++.+.
T Consensus 49 ~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 49 TELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 556677777788888999999998764211 11111 24555555555556666554
No 240
>PRK06128 oxidoreductase; Provisional
Probab=23.30 E-value=5e+02 Score=23.54 Aligned_cols=106 Identities=13% Similarity=0.226 Sum_probs=54.5
Q ss_pred HCCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCcceeecCC
Q 023717 84 MVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETS 163 (278)
Q Consensus 84 ~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~S 163 (278)
+.|=.|++|||-||+-+ .+..-|.+.+- .|++++-.. +--+.....+.++..|..+..
T Consensus 53 l~~k~vlITGas~gIG~------~~a~~l~~~G~-~V~i~~~~~-~~~~~~~~~~~~~~~~~~~~~-------------- 110 (300)
T PRK06128 53 LQGRKALITGADSGIGR------ATAIAFAREGA-DIALNYLPE-EEQDAAEVVQLIQAEGRKAVA-------------- 110 (300)
T ss_pred cCCCEEEEecCCCcHHH------HHHHHHHHcCC-EEEEEeCCc-chHHHHHHHHHHHHcCCeEEE--------------
Confidence 55668999999999954 45555544432 233332211 122344555666655533221
Q ss_pred CCccCcccCCHHHHHHHHHH-HHhcCCCCeEEEEeCC---C--ccCCCChHHHHHHHH
Q 023717 164 GSKVPCRVDSPEDCARLIDV-NMKLKLGSGLVIGVPI---P--REHAASGRVIESAIQ 215 (278)
Q Consensus 164 g~~~~~r~d~~~e~A~~~~~-~~~l~l~~g~lvanPi---P--~e~~~~~~~i~~~i~ 215 (278)
++.-+.+++++.+++.. ...++-.. +||.|.- + .-..++.+.+++.++
T Consensus 111 ---~~~Dl~~~~~v~~~~~~~~~~~g~iD-~lV~nAg~~~~~~~~~~~~~~~~~~~~~ 164 (300)
T PRK06128 111 ---LPGDLKDEAFCRQLVERAVKELGGLD-ILVNIAGKQTAVKDIADITTEQFDATFK 164 (300)
T ss_pred ---EecCCCCHHHHHHHHHHHHHHhCCCC-EEEECCcccCCCCChhhCCHHHHHHHHH
Confidence 23445677777777764 33344222 4555532 1 122345666665544
No 241
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.26 E-value=2.9e+02 Score=28.65 Aligned_cols=103 Identities=18% Similarity=0.199 Sum_probs=58.7
Q ss_pred CeEEEecccccccchhhhHhHhhhCC-eeEEeecCCCCcceeecCCCCccCcccCCHHHHHHHHHHHHhcCCCCeEEEEe
Q 023717 119 PVAVVSAGIKSILDIPRTLEYLETHG-VCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGV 197 (278)
Q Consensus 119 pV~VVcaG~KsILDi~~TLE~LET~G-V~V~gy~t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvan 197 (278)
+|+|+-||- +.+|.=++|..==-.| |.++ =++.-.|.++...-..+ =+-...-
T Consensus 198 rVli~GsgL-t~~D~v~~l~~~gh~g~It~i-SRrGl~~~~h~~~~~~p------------------------~~d~~~~ 251 (474)
T COG4529 198 RVLIVGSGL-TSIDQVLVLRRRGHKGPITAI-SRRGLVPRPHIPVPYEP------------------------LGDFLSD 251 (474)
T ss_pred ceEEecCCc-hhHHHHHHHhccCCccceEEE-eccccccCCCCCCCccc------------------------cccccch
Confidence 399999998 5568777776611111 2222 13444444443332222 0112222
Q ss_pred CCCccCCCChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHHHHhCCccHHHHHHHHHHH
Q 023717 198 PIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNN 258 (278)
Q Consensus 198 PiP~e~~~~~~~i~~~i~~Al~ea~~~gi~Gk~vTPflL~~i~elT~G~Sl~aNiaLl~nN 258 (278)
|.+.+ ++ +..+|.+.|+|++++|+.=++ +.+.+ .-.|..+..|+..++.|
T Consensus 252 p~~s~--~~---L~~~vR~~l~e~e~~g~~w~~----v~D~l--R~~~~~~wq~l~~~er~ 301 (474)
T COG4529 252 PANSA--LS---LLSIVRLLLREAEEAGQDWRD----VVDGL--RPQGQWIWQNLPAVERR 301 (474)
T ss_pred hhhhh--hh---HHHHHHHHHHHHHHhCCCHHH----HHHhh--hhhhhHHHHhCCHHHHH
Confidence 33332 22 789999999999999997655 33333 33456677788888877
No 242
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=23.25 E-value=4.9e+02 Score=22.51 Aligned_cols=16 Identities=44% Similarity=0.636 Sum_probs=12.6
Q ss_pred CCCcEEEecccccccC
Q 023717 85 VGIPVFVTGGIGGVHR 100 (278)
Q Consensus 85 aGI~VFaTGGIGGVHr 100 (278)
.|=.+++|||-||+-+
T Consensus 7 ~~k~vlVtGas~gIG~ 22 (260)
T PRK12823 7 AGKVVVVTGAAQGIGR 22 (260)
T ss_pred CCCEEEEeCCCchHHH
Confidence 3556999999999844
No 243
>PRK08862 short chain dehydrogenase; Provisional
Probab=23.24 E-value=3.8e+02 Score=23.49 Aligned_cols=87 Identities=15% Similarity=0.153 Sum_probs=43.8
Q ss_pred CCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCcceeecCCC
Q 023717 85 VGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSG 164 (278)
Q Consensus 85 aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg 164 (278)
.|=.+++|||-+|+-+ .+..-|.+-+- .|+++.-..+ .+..+.+-++..|..+..|..
T Consensus 4 ~~k~~lVtGas~GIG~------aia~~la~~G~-~V~~~~r~~~---~l~~~~~~i~~~~~~~~~~~~------------ 61 (227)
T PRK08862 4 KSSIILITSAGSVLGR------TISCHFARLGA-TLILCDQDQS---ALKDTYEQCSALTDNVYSFQL------------ 61 (227)
T ss_pred CCeEEEEECCccHHHH------HHHHHHHHCCC-EEEEEcCCHH---HHHHHHHHHHhcCCCeEEEEc------------
Confidence 4556899999999843 34444444332 2333322222 233344445444555443322
Q ss_pred CccCcccCCHHHHHHHHHHH-HhcCCCCeEEEEeC
Q 023717 165 SKVPCRVDSPEDCARLIDVN-MKLKLGSGLVIGVP 198 (278)
Q Consensus 165 ~~~~~r~d~~~e~A~~~~~~-~~l~l~~g~lvanP 198 (278)
-+.+++++.+++..- ..+|.+--+||.|.
T Consensus 62 -----D~~~~~~~~~~~~~~~~~~g~~iD~li~na 91 (227)
T PRK08862 62 -----KDFSQESIRHLFDAIEQQFNRAPDVLVNNW 91 (227)
T ss_pred -----cCCCHHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 234677777766643 34442222577765
No 244
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=23.17 E-value=2.5e+02 Score=26.71 Aligned_cols=182 Identities=14% Similarity=0.094 Sum_probs=87.2
Q ss_pred eecC-CHHHHHHHHhcCCCcccccccc-hHH----HHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCCcccccc
Q 023717 35 CVGL-STEELERLAKLGSKAQKTARRD-IAH----VVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDI 108 (278)
Q Consensus 35 ~VGl-~~~el~~la~~~~~~~K~srRD-l~~----~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrg~~~t~Di 108 (278)
.+|+ ++|++++|.+.+=+..-.+..+ +.. -+..+....-..=-++..|+.+||+|-+ |+|=|. -.
T Consensus 135 ~~g~~~~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s-~~i~G~-~E------- 205 (343)
T TIGR03551 135 NSGLSVEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTA-TIMYGH-VE------- 205 (343)
T ss_pred HcCCCHHHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccc-eEEEec-CC-------
Confidence 3454 5666888877542222222333 211 1222221222345889999999999855 445442 21
Q ss_pred ccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCc-ceeecCCCCccC---cccCCHHHHHHHHHHH
Q 023717 109 SSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFP-AFFTETSGSKVP---CRVDSPEDCARLIDVN 184 (278)
Q Consensus 109 SaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fP-aFy~~~Sg~~~~---~r~d~~~e~A~~~~~~ 184 (278)
+.=|+-.++.+|...++.-.||+.-- | -|....+++.-. ..--+++|..+++...
T Consensus 206 --------------------t~ed~~~~l~~lr~l~~~~~~~~~~i-P~~f~~~gT~l~~~~~~~~~~~~~~~lr~iAv~ 264 (343)
T TIGR03551 206 --------------------TPEHWVDHLLILREIQEETGGFTEFV-PLPFVHYNAPLYLKGMARPGPTGREDLKVHAIA 264 (343)
T ss_pred --------------------CHHHHHHHHHHHHHhhHHhCCeeEEE-eccccCCCCccccccCCCCCCCHHHHHHHHHHH
Confidence 23345566667777666444443110 1 112223333211 0113788999988877
Q ss_pred HhcCCCCe-EEEEeCCCccCCCChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHHHHhCCccH-HHHHHHHHHHH
Q 023717 185 MKLKLGSG-LVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSL-ASNIALVKNNA 259 (278)
Q Consensus 185 ~~l~l~~g-~lvanPiP~e~~~~~~~i~~~i~~Al~ea~~~gi~Gk~vTPflL~~i~elT~G~Sl-~aNiaLl~nNa 259 (278)
+-+ +|.. +-|+-+- ..+.+..- +.+| .+-..++.| | -+-.+|....+..+- .-|..=+.+..
T Consensus 265 Rl~-lp~~~~~i~a~~---~~l~~~~~----~~~l-~~Gan~~~g---~-~~~e~v~~~~g~~~~~~~~~~~~~~~i 328 (343)
T TIGR03551 265 RIL-LHGLIDNIQASW---VKLGKKLA----QVAL-RCGANDLGG---T-LMEESISRAAGASHGEYLSPEELEAII 328 (343)
T ss_pred HHh-CCCcccCeeccc---cccCHHHH----HHHH-hCCCccCCc---c-ceecccccccCCCCCCCCCHHHHHHHH
Confidence 665 4655 2455443 13333111 2222 222334444 2 333667666665553 23444444333
No 245
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=23.08 E-value=3.9e+02 Score=25.43 Aligned_cols=60 Identities=33% Similarity=0.387 Sum_probs=37.8
Q ss_pred CCCChHHHHHHHHH---HHHHHHHcCCCCccCC------------hHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHH
Q 023717 203 HAASGRVIESAIQS---ALREAREKNITGNAET------------PFLLARVNELTGGLSLASNIALVKNNALIGAKISV 267 (278)
Q Consensus 203 ~~~~~~~i~~~i~~---Al~ea~~~gi~Gk~vT------------PflL~~i~elT~G~Sl~aNiaLl~nNa~laa~IA~ 267 (278)
.+|+.++|+++|++ |-+.|++.|..|=+++ |+.++|=+|. +| |+ +|..++.-+|-.
T Consensus 137 ~~mt~~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~y-GG-sl-------enR~rf~~EiI~ 207 (338)
T cd04733 137 RAMTEEEIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEY-GG-SL-------ENRARLLLEIYD 207 (338)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccC-CC-CH-------HHHHHHHHHHHH
Confidence 57899999988875 4456667788887764 5555554443 33 65 455555555555
Q ss_pred HHHH
Q 023717 268 ALAQ 271 (278)
Q Consensus 268 ~~~~ 271 (278)
+..+
T Consensus 208 aIR~ 211 (338)
T cd04733 208 AIRA 211 (338)
T ss_pred HHHH
Confidence 5443
No 246
>TIGR01273 speA arginine decarboxylase, biosynthetic. A distinct biodegradative form is also pyridoxal phosphate-dependent but is not similar in sequence.
Probab=23.08 E-value=3.9e+02 Score=28.40 Aligned_cols=121 Identities=19% Similarity=0.098 Sum_probs=74.0
Q ss_pred CeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCcceeecCCCCccCcccCCHHHHHHHHHHHHhcCCCCeEEEE-e
Q 023717 119 PVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIG-V 197 (278)
Q Consensus 119 pV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lva-n 197 (278)
+-.+||.|.|+-=+|..-|+. ++-|+.+-..+|+++|+..+.+...+++...-+.|- |
T Consensus 139 ~~~Ii~NG~K~~e~I~~Al~~---------------------~~lG~~v~IvIDs~~EL~~I~~~a~~~~~~~~IglRvn 197 (624)
T TIGR01273 139 GAPIVCNGYKDREYIELALIG---------------------RKLGHNVFIVIEKLSELDLVIEEAKKLGVKPKLGLRAR 197 (624)
T ss_pred CCEEEeCCCCCHHHHHHHHHh---------------------hhcCCCeEEEECCHHHHHHHHHHHHhcCCCceEEEEEe
Confidence 467899998865433333321 122444434799999999999988888766555543 3
Q ss_pred CC-------------CccCCCChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHHHHhCCccHHHHHHHHHHHHHHHHH
Q 023717 198 PI-------------PREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAK 264 (278)
Q Consensus 198 Pi-------------P~e~~~~~~~i~~~i~~Al~ea~~~gi~Gk~vTPflL~~i~elT~G~Sl~aNiaLl~nNa~laa~ 264 (278)
|- +..+-++.+++.++++.+.+.-....+.|=-+| .+ |=-.|+.-+++..+-+.+
T Consensus 198 l~~~~~g~~~~tgg~~SKFGl~~~ei~~~i~~lk~~~~l~~L~GLHfH----------iG--SQi~d~~~~~~ai~~~~~ 265 (624)
T TIGR01273 198 LASKGSGKWASSGGEKSKFGLSATQILEVVRLLEQNGLLDCLKLLHFH----------IG--SQISNIDDVKKGVREAAR 265 (624)
T ss_pred cCCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCCCceEEEEEe----------CC--CCCCCHHHHHHHHHHHHH
Confidence 42 246678887777776655432111112222222 11 112478888899999999
Q ss_pred HHHHHHHH
Q 023717 265 ISVALAQL 272 (278)
Q Consensus 265 IA~~~~~~ 272 (278)
+..++.++
T Consensus 266 i~~eL~~~ 273 (624)
T TIGR01273 266 FYCELRKL 273 (624)
T ss_pred HHHHHHHc
Confidence 98888763
No 247
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=23.03 E-value=2.8e+02 Score=28.19 Aligned_cols=78 Identities=15% Similarity=0.221 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHHHHHCCCcccEEEEEcCceeecCCHHHHHHHHh---cCCCcccccccchHHHHhcCCCchhhHHHHHHH
Q 023717 5 QNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAK---LGSKAQKTARRDIAHVVATRGNGATTVSATMFF 81 (278)
Q Consensus 5 ~Nle~A~~~E~~vR~~GavPATIaii~G~i~VGl~~~el~~la~---~~~~~~K~srRDl~~~~a~~~~GaTTVaaTm~l 81 (278)
.|.+.+...=+..|+.|. .|++=| .|....-+++|.. -..+.+|+++.=+...- .+ -..+..-..+
T Consensus 536 ~~~~~~~~~~~~l~~~G~---~ialDd----fG~g~ss~~~L~~~~~l~~d~iKid~~~~~~~~---~~-~~~~~~i~~~ 604 (660)
T PRK11829 536 QDLDEALRLLRELQGLGL---LIALDD----FGIGYSSLRYLNHLKSLPIHMIKLDKSFVKNLP---ED-DAIARIISCV 604 (660)
T ss_pred cCHHHHHHHHHHHHhCCC---EEEEEC----CCCchhhHHHHhccCCCCCcEEEECHHHHhccc---CC-HHHHHHHHHH
Confidence 456666777777888886 466544 6777777788876 55567888864322211 11 2445566678
Q ss_pred HHHCCCcEEEec
Q 023717 82 ASMVGIPVFVTG 93 (278)
Q Consensus 82 A~~aGI~VFaTG 93 (278)
|+..||+|.|+|
T Consensus 605 a~~l~~~viaeg 616 (660)
T PRK11829 605 SDVLKVRVMAEG 616 (660)
T ss_pred HHHcCCeEEEec
Confidence 999999988884
No 248
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=23.02 E-value=1.6e+02 Score=25.95 Aligned_cols=66 Identities=15% Similarity=0.108 Sum_probs=31.0
Q ss_pred HHHHHCCCcEEEecccccccCC----CccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeec
Q 023717 80 FFASMVGIPVFVTGGIGGVHRH----GEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYK 151 (278)
Q Consensus 80 ~lA~~aGI~VFaTGGIGGVHrg----~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~ 151 (278)
..+..+|...+.++. +|.+.. ....++....+.+.-+.||++ ..|.++-=|+. .+-..|.--+..+
T Consensus 133 ~~a~~~G~d~i~~~~-~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia-~GGI~t~~~~~----~~l~~GadgV~iG 202 (221)
T PRK01130 133 LAAQKLGFDFIGTTL-SGYTEETKKPEEPDFALLKELLKAVGCPVIA-EGRINTPEQAK----KALELGAHAVVVG 202 (221)
T ss_pred HHHHHcCCCEEEcCC-ceeecCCCCCCCcCHHHHHHHHHhCCCCEEE-ECCCCCHHHHH----HHHHCCCCEEEEc
Confidence 456677887776542 222111 111233444444444566554 45666554443 3333455444444
No 249
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=22.80 E-value=2.8e+02 Score=25.90 Aligned_cols=71 Identities=21% Similarity=0.274 Sum_probs=47.7
Q ss_pred HHHHHHHHCCCcEEEecccccccC-CCccccccccchhh-hc-CCCeEEEecccccccchhhhHhHhhhCCeeEEeecC
Q 023717 77 ATMFFASMVGIPVFVTGGIGGVHR-HGEHTMDISSDLTE-LG-RTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKT 152 (278)
Q Consensus 77 aTm~lA~~aGI~VFaTGGIGGVHr-g~~~t~DiSaDL~e-L~-rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t 152 (278)
.....|..+|++.+...|-||-.. ++..+++.-.++.+ +. +.|| +.+-|..+=.|+-+ +|. .|.--|+.++
T Consensus 184 ~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipv-ia~GGI~~~~d~~k---al~-lGAd~V~ig~ 257 (299)
T cd02809 184 EDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEV-LLDGGIRRGTDVLK---ALA-LGADAVLIGR 257 (299)
T ss_pred HHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeE-EEeCCCCCHHHHHH---HHH-cCCCEEEEcH
Confidence 346778889999998877777433 45567777777754 33 4553 45556666666655 444 7888888887
No 250
>PRK06246 fumarate hydratase; Provisional
Probab=22.78 E-value=2.3e+02 Score=27.31 Aligned_cols=54 Identities=13% Similarity=-0.074 Sum_probs=40.3
Q ss_pred CChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHHHHhCCc---cHHHHHHHHHHHHHHHHH
Q 023717 205 ASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGL---SLASNIALVKNNALIGAK 264 (278)
Q Consensus 205 ~~~~~i~~~i~~Al~ea~~~gi~Gk~vTPflL~~i~elT~G~---Sl~aNiaLl~nNa~laa~ 264 (278)
++.+.|.+.+.+++.+|. ..+-|-.++.+.+.-+-+ .-+..+.-+.+|+++|++
T Consensus 4 i~~~~i~~~v~~~~~~a~------~~lp~Dv~~~l~~a~~~E~s~~ak~~l~~ileN~~iA~~ 60 (280)
T PRK06246 4 IHVEDIIEAVAELCIEAN------YYLPDDVKEALKKAYEKEESPIGKEILKAILENAEIAKE 60 (280)
T ss_pred ccHHHHHHHHHHHHHHHH------hhCCHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHhc
Confidence 556778899999998884 567777777776654433 345678889999999875
No 251
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=22.72 E-value=3.6e+02 Score=24.08 Aligned_cols=75 Identities=16% Similarity=0.108 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHCCCcEEEeccccccc------CCCccccc-----cccchhhhc--CCCeEEEecccccccchhhhHhH
Q 023717 73 TTVSATMFFASMVGIPVFVTGGIGGVH------RHGEHTMD-----ISSDLTELG--RTPVAVVSAGIKSILDIPRTLEY 139 (278)
Q Consensus 73 TTVaaTm~lA~~aGI~VFaTGGIGGVH------rg~~~t~D-----iSaDL~eL~--rtpV~VVcaG~KsILDi~~TLE~ 139 (278)
..-.++..+|+..|++|+++-.-.--. .|....+| ....+.++. ...+++=|+|.. .+...+..
T Consensus 157 ~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~d~vi~~~g~~---~~~~~~~~ 233 (329)
T cd05288 157 AVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEELGFDAAINYKTPDLAEALKEAAPDGIDVYFDNVGGE---ILDAALTL 233 (329)
T ss_pred hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhcCCceEEecCChhHHHHHHHhccCCceEEEEcchHH---HHHHHHHh
Confidence 344467789999999999885411000 11122222 222334442 345777777764 45566788
Q ss_pred hhhCCeeEEeec
Q 023717 140 LETHGVCVAAYK 151 (278)
Q Consensus 140 LET~GV~V~gy~ 151 (278)
|...|.-| -++
T Consensus 234 l~~~G~~v-~~g 244 (329)
T cd05288 234 LNKGGRIA-LCG 244 (329)
T ss_pred cCCCceEE-EEe
Confidence 88888643 344
No 252
>PRK07577 short chain dehydrogenase; Provisional
Probab=22.72 E-value=4.7e+02 Score=22.09 Aligned_cols=15 Identities=33% Similarity=0.465 Sum_probs=11.4
Q ss_pred CCcEEEecccccccC
Q 023717 86 GIPVFVTGGIGGVHR 100 (278)
Q Consensus 86 GI~VFaTGGIGGVHr 100 (278)
+=.+++|||-||+.+
T Consensus 3 ~k~vlItG~s~~iG~ 17 (234)
T PRK07577 3 SRTVLVTGATKGIGL 17 (234)
T ss_pred CCEEEEECCCCcHHH
Confidence 345899999998844
No 253
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=22.66 E-value=3.5e+02 Score=25.44 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=20.3
Q ss_pred CCCCeEEEEeCCCccCCCChHHHHHHHHHHHHHHHHcCC
Q 023717 188 KLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNI 226 (278)
Q Consensus 188 ~l~~g~lvanPiP~e~~~~~~~i~~~i~~Al~ea~~~gi 226 (278)
.+|.-++|.+|.-+ ..|++||...||
T Consensus 156 ~~Pd~iii~d~~~~-------------~~ai~Ea~kl~I 181 (258)
T PRK05299 156 GLPDALFVVDPNKE-------------HIAVKEARKLGI 181 (258)
T ss_pred cCCCEEEEeCCCcc-------------HHHHHHHHHhCC
Confidence 57999999998422 268889999988
No 254
>PRK13561 putative diguanylate cyclase; Provisional
Probab=22.55 E-value=3e+02 Score=28.07 Aligned_cols=75 Identities=20% Similarity=0.340 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHHHHHCCCcccEEEEEcCceeecCCHHHHHHHHh---cCCCccccccc---chHHHHhcCCCchhhHHHH
Q 023717 5 QNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAK---LGSKAQKTARR---DIAHVVATRGNGATTVSAT 78 (278)
Q Consensus 5 ~Nle~A~~~E~~vR~~GavPATIaii~G~i~VGl~~~el~~la~---~~~~~~K~srR---Dl~~~~a~~~~GaTTVaaT 78 (278)
.|.+.+...=+.+|+.|. .|++=| .|..-.-+..|.. -.-+..|+++. |++ ..-.-|.+-
T Consensus 531 ~~~~~~~~~~~~l~~~G~---~i~ldd----fG~g~ssl~~L~~l~~l~~d~lKiD~s~i~~i~-------~~~~~v~~i 596 (651)
T PRK13561 531 DDPHAAVAILRPLRNAGV---RVALDD----FGMGYAGLRQLQHMKSLPIDVLKIDKMFVDGLP-------EDDSMVAAI 596 (651)
T ss_pred cCHHHHHHHHHHHHHCCC---EEEEEC----CCCCcccHHHHhhcCCCCCcEEEECHHHHhcCC-------CCHHHHHHH
Confidence 355666667777788886 466533 5654455555532 23467888763 332 223678899
Q ss_pred HHHHHHCCCcEEEec
Q 023717 79 MFFASMVGIPVFVTG 93 (278)
Q Consensus 79 m~lA~~aGI~VFaTG 93 (278)
..+||..||+|.|+|
T Consensus 597 ~~~a~~l~i~viAeg 611 (651)
T PRK13561 597 IMLAQSLNLQVIAEG 611 (651)
T ss_pred HHHHHHCCCcEEEec
Confidence 999999999999984
No 255
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=22.54 E-value=5.8e+02 Score=25.62 Aligned_cols=90 Identities=11% Similarity=0.094 Sum_probs=54.8
Q ss_pred CCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCcceeecCCCCccCcccCCHHHHHHHHHHHHhcCCCCeEEEE
Q 023717 117 RTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIG 196 (278)
Q Consensus 117 rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lva 196 (278)
+.+|.+|-+|...- .+-+.|..-...|..++||=.|+ | ..|.++|. ..+.+++.++++.+ + -.-++++
T Consensus 143 ~rrVLIvGaG~~g~-~l~~~L~~~~~~g~~vVGfiDdd-~-----~~g~~Vpv-lG~~~dL~~~v~~~---~-IdeViIA 210 (463)
T PRK10124 143 KRMVAVAGDLPAGQ-MLLESFRNEPWLGFEVVGVYHDP-K-----PGGVSNDW-AGNLQQLVEDAKAG---K-IHNVYIA 210 (463)
T ss_pred CCcEEEEECCHHHH-HHHHHHhcCccCCeEEEEEEeCC-c-----cccCCCCc-CCCHHHHHHHHHhC---C-CCEEEEe
Confidence 46799999997553 33344443345689999987554 2 23566653 66778888777553 2 3556777
Q ss_pred eCCCccCCCChHHHHHHHHHHHHHHHHcCCC
Q 023717 197 VPIPREHAASGRVIESAIQSALREAREKNIT 227 (278)
Q Consensus 197 nPiP~e~~~~~~~i~~~i~~Al~ea~~~gi~ 227 (278)
.|- .+.+.+++++ .++++.+++
T Consensus 211 ip~-----~~~~~l~ell----~~~~~~~v~ 232 (463)
T PRK10124 211 MSM-----CDGARVKKLV----RQLADTTCS 232 (463)
T ss_pred CCC-----cchHHHHHHH----HHHHHcCCe
Confidence 663 3444455554 455566664
No 256
>PHA03101 DNA topoisomerase type I; Provisional
Probab=22.54 E-value=1.6e+02 Score=28.94 Aligned_cols=62 Identities=8% Similarity=0.005 Sum_probs=50.5
Q ss_pred eecCCCCccCcccCCHHHHHHHHHHHHhcCCCCeEEEEeCCCccCCCChHHHHHHHHHHHHHHHHcCCCCccCChH
Q 023717 159 FTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPF 234 (278)
Q Consensus 159 y~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~~~i~~~i~~Al~ea~~~gi~Gk~vTPf 234 (278)
|..+||..-...+++-..++++++.-+++.+|+--||.- ++++.|++.|.+ .+++=|++.=|
T Consensus 165 F~GKsG~~~~~~i~dD~rL~~~v~~l~~~~~Pg~~LF~y-------~d~~~VN~Ylre-------~~fTAKDFRTW 226 (314)
T PHA03101 165 FVGKDKVSHEFVVHKSNRLYKPLLKLIDKTNPDDFLFNK-------LSERKVYKFMKQ-------FGIRLKDLRTY 226 (314)
T ss_pred EECCCCcEEEEEecccHHHHHHHHHHHcCCCChHHHhhc-------CCHHHHHHHHHh-------CCCcceeecCc
Confidence 566999999889985446999999999887888877754 377788888877 28999999988
No 257
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=22.52 E-value=5.6e+02 Score=22.92 Aligned_cols=19 Identities=11% Similarity=0.050 Sum_probs=15.4
Q ss_pred hhhhHhHhhhCCeeEEeec
Q 023717 133 IPRTLEYLETHGVCVAAYK 151 (278)
Q Consensus 133 i~~TLE~LET~GV~V~gy~ 151 (278)
.....++++..+||++.+.
T Consensus 78 ~~~~~~~~~~~~ip~v~~~ 96 (336)
T cd06360 78 ALAMVKVLREPGTPLINPN 96 (336)
T ss_pred HHHHHHHHHhcCceEEecC
Confidence 3455778999999999986
No 258
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=22.46 E-value=2.6e+02 Score=25.89 Aligned_cols=74 Identities=15% Similarity=0.126 Sum_probs=41.4
Q ss_pred HHHHHHHHHCCCcEEEecccccc-----cCCCcccccccc----chhh----hcC-CC------eEEEecccccccchhh
Q 023717 76 SATMFFASMVGIPVFVTGGIGGV-----HRHGEHTMDISS----DLTE----LGR-TP------VAVVSAGIKSILDIPR 135 (278)
Q Consensus 76 aaTm~lA~~aGI~VFaTGGIGGV-----Hrg~~~t~DiSa----DL~e----L~r-tp------V~VVcaG~KsILDi~~ 135 (278)
..++.+|+..|++|++|..---- ..|+...+|... |+.+ +.. .. +++-|+|...-+ ..
T Consensus 180 ~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d~v~d~~g~~~~~--~~ 257 (349)
T TIGR03201 180 GYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGWKIFECSGSKPGQ--ES 257 (349)
T ss_pred HHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcCEEEECCCChHHH--HH
Confidence 35677899999999998641100 002223344322 3322 211 11 577799976533 34
Q ss_pred hHhHhhhCCeeE-Eeec
Q 023717 136 TLEYLETHGVCV-AAYK 151 (278)
Q Consensus 136 TLE~LET~GV~V-~gy~ 151 (278)
.++.|...|.-| +|+.
T Consensus 258 ~~~~l~~~G~iv~~G~~ 274 (349)
T TIGR03201 258 ALSLLSHGGTLVVVGYT 274 (349)
T ss_pred HHHHHhcCCeEEEECcC
Confidence 678898888665 4543
No 259
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=22.38 E-value=1.3e+02 Score=20.64 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=24.3
Q ss_pred eEEEecccccccc-hhhhHhHhhhCCeeEEee
Q 023717 120 VAVVSAGIKSILD-IPRTLEYLETHGVCVAAY 150 (278)
Q Consensus 120 V~VVcaG~KsILD-i~~TLE~LET~GV~V~gy 150 (278)
|.||+.|.+..-+ +.+-++.|...|++|.-.
T Consensus 4 isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i 35 (66)
T cd04922 4 LALVGDGMAGTPGVAATFFSALAKANVNIRAI 35 (66)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEE
Confidence 6788888766555 567889999999999544
No 260
>PRK07069 short chain dehydrogenase; Validated
Probab=22.12 E-value=3.5e+02 Score=23.10 Aligned_cols=30 Identities=33% Similarity=0.624 Sum_probs=19.3
Q ss_pred cEEEecccccccCCCccccccccchhhhcCCCeEEEe
Q 023717 88 PVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVS 124 (278)
Q Consensus 88 ~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVc 124 (278)
++++|||-||+-+ .+...|.+-+ ..|.+++
T Consensus 1 ~ilVtG~~~~iG~------~~a~~l~~~G-~~v~~~~ 30 (251)
T PRK07069 1 RAFITGAAGGLGR------AIARRMAEQG-AKVFLTD 30 (251)
T ss_pred CEEEECCCChHHH------HHHHHHHHCC-CEEEEEe
Confidence 4799999999833 5666665544 2354444
No 261
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=21.99 E-value=1.4e+02 Score=27.50 Aligned_cols=134 Identities=21% Similarity=0.326 Sum_probs=73.3
Q ss_pred HHHHHHHHHHCCCcccEEEEEcCceee--cCCHHHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHH-HHHHHHCC
Q 023717 10 AKEVEAIVRNNGAVPATIAILEGLPCV--GLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSAT-MFFASMVG 86 (278)
Q Consensus 10 A~~~E~~vR~~GavPATIaii~G~i~V--Gl~~~el~~la~~~~~~~K~srRDl~~~~a~~~~GaTTVaaT-m~lA~~aG 86 (278)
...+-+...+.|+..-.|.=.+|-+.= ||+.++|.++.+.... ++.+-+.. -.+++..+..- -+ --..
T Consensus 44 G~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~--~v~~~~~~-----~~~~~~~~~~~~~i--l~~~ 114 (244)
T PF00208_consen 44 GSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGS--RVDDYPLE-----SPDGAEYIPNDDEI--LSVD 114 (244)
T ss_dssp HHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSS--HSTTGTHT-----CSSTSEEECHHCHG--GTSS
T ss_pred HHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCC--cccccccc-----cccceeEecccccc--cccc
Confidence 334445555678775333212233322 7888888877543221 22222211 00011111110 11 2248
Q ss_pred CcEEEecccccccCCCccccccccchhh-hcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCcceeecCCCC
Q 023717 87 IPVFVTGGIGGVHRHGEHTMDISSDLTE-LGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGS 165 (278)
Q Consensus 87 I~VFaTGGIGGVHrg~~~t~DiSaDL~e-L~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~ 165 (278)
.+||+-|.++++ |..|-.. +=+.-.=+||-|+..=+. |...+.|+.+||.|+ |.|+....|+
T Consensus 115 ~DiliP~A~~~~---------I~~~~~~~~i~~~akiIvegAN~p~t-~~a~~~L~~rGI~vi-------PD~~aNaGGv 177 (244)
T PF00208_consen 115 CDILIPCALGNV---------INEDNAPSLIKSGAKIIVEGANGPLT-PEADEILRERGILVI-------PDFLANAGGV 177 (244)
T ss_dssp SSEEEEESSSTS---------BSCHHHCHCHHTT-SEEEESSSSSBS-HHHHHHHHHTT-EEE--------HHHHTTHHH
T ss_pred ccEEEEcCCCCe---------eCHHHHHHHHhccCcEEEeCcchhcc-HHHHHHHHHCCCEEE-------cchhhcCCCe
Confidence 899999999975 3333333 334225566777777776 666789999999998 9999998886
Q ss_pred ccCc
Q 023717 166 KVPC 169 (278)
Q Consensus 166 ~~~~ 169 (278)
-+.|
T Consensus 178 i~s~ 181 (244)
T PF00208_consen 178 IVSY 181 (244)
T ss_dssp HHHH
T ss_pred Eeeh
Confidence 5543
No 262
>PRK11260 cystine transporter subunit; Provisional
Probab=21.94 E-value=98 Score=27.46 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=25.6
Q ss_pred ccchhhhHhHhhhCCeeEEeecCCCCcceeecCCC
Q 023717 130 ILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSG 164 (278)
Q Consensus 130 ILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg 164 (278)
.++=+.++++++..|+=.+||..+.+|-.|..++|
T Consensus 27 ~~~~~~~l~~i~~~~~l~v~~~~~~~P~~~~~~~g 61 (266)
T PRK11260 27 SFADEGLLNKVKERGTLLVGLEGTYPPFSFQGEDG 61 (266)
T ss_pred cccCcccHHHhhcCCeEEEEeCCCcCCceEECCCC
Confidence 45667899999999999999876656644554545
No 263
>PRK07832 short chain dehydrogenase; Provisional
Probab=21.88 E-value=4.1e+02 Score=23.48 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=15.7
Q ss_pred cEEEecccccccCCCccccccccchhhhc
Q 023717 88 PVFVTGGIGGVHRHGEHTMDISSDLTELG 116 (278)
Q Consensus 88 ~VFaTGGIGGVHrg~~~t~DiSaDL~eL~ 116 (278)
.+++|||-||+-+ .+..-|.+.+
T Consensus 2 ~vlItGas~giG~------~la~~la~~G 24 (272)
T PRK07832 2 RCFVTGAASGIGR------ATALRLAAQG 24 (272)
T ss_pred EEEEeCCCCHHHH------HHHHHHHHCC
Confidence 4789999999855 4555555444
No 264
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=21.82 E-value=5.4e+02 Score=24.57 Aligned_cols=78 Identities=24% Similarity=0.307 Sum_probs=50.7
Q ss_pred hhhHHHHHHHHHHCCCcEEEecccccc-------cCCCcc-------ccccc----cchhh----hcCCCeEEEeccccc
Q 023717 72 ATTVSATMFFASMVGIPVFVTGGIGGV-------HRHGEH-------TMDIS----SDLTE----LGRTPVAVVSAGIKS 129 (278)
Q Consensus 72 aTTVaaTm~lA~~aGI~VFaTGGIGGV-------Hrg~~~-------t~DiS----aDL~e----L~rtpV~VVcaG~Ks 129 (278)
++|+ .+...+..+|++.+.-.|.||- ||+... ..|.. .-|.+ ..+.||+ .+-|..+
T Consensus 189 g~s~-~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipIi-asGGIr~ 266 (326)
T cd02811 189 GISR-ETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLI-ASGGIRN 266 (326)
T ss_pred CCCH-HHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcEE-EECCCCC
Confidence 3565 6667777899999999999984 676331 12222 12222 2255643 4678899
Q ss_pred ccchhhhHhHhhhCCeeEEeecCCCC
Q 023717 130 ILDIPRTLEYLETHGVCVAAYKTNEF 155 (278)
Q Consensus 130 ILDi~~TLE~LET~GV~V~gy~t~~f 155 (278)
=.|+-+.|. .|.-.++.++--+
T Consensus 267 ~~dv~kal~----lGAd~V~i~~~~L 288 (326)
T cd02811 267 GLDIAKALA----LGADLVGMAGPFL 288 (326)
T ss_pred HHHHHHHHH----hCCCEEEEcHHHH
Confidence 999988876 4888888885433
No 265
>PRK02427 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=21.80 E-value=7.2e+02 Score=23.85 Aligned_cols=44 Identities=23% Similarity=0.203 Sum_probs=27.7
Q ss_pred ccccccchhh----h----cCCCeEEEecc-cccccchhhhHhHhhhCCeeEE
Q 023717 105 TMDISSDLTE----L----GRTPVAVVSAG-IKSILDIPRTLEYLETHGVCVA 148 (278)
Q Consensus 105 t~DiSaDL~e----L----~rtpV~VVcaG-~KsILDi~~TLE~LET~GV~V~ 148 (278)
..|+|.|... + ++.++.+...+ .++==.++.|++.|+..|+.|-
T Consensus 161 ~~~~ss~~~~~lll~aa~~~~g~~~i~~~~~~~~rp~i~~~~~~L~~lG~~i~ 213 (435)
T PRK02427 161 DGPVSSQFVKSLLLLAPLFAEGDTETTVIEPLPSRPHTEITLRMLRAFGVEVE 213 (435)
T ss_pred cCCcCCHHHHHHHHHHhhccCCCcEEEEcCCCCCCCHHHHHHHHHHHCCCeEE
Confidence 4455766432 1 24554444444 3444457789999999999986
No 266
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=21.79 E-value=4.7e+02 Score=21.73 Aligned_cols=35 Identities=11% Similarity=0.088 Sum_probs=23.2
Q ss_pred CCCeEEEecccccccchhhhHhHhhhCCeeEEeecCC
Q 023717 117 RTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTN 153 (278)
Q Consensus 117 rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~ 153 (278)
+-+-.+|+.+.-.- +.. .++.|...||||+.+..+
T Consensus 54 ~~~d~ii~~~~~~~-~~~-~~~~l~~~~ip~v~~~~~ 88 (264)
T cd01537 54 RGVDGIIIAPSDLT-APT-IVKLARKAGIPVVLVDRD 88 (264)
T ss_pred cCCCEEEEecCCCc-chh-HHHHhhhcCCCEEEeccC
Confidence 34555565554332 222 689999999999999743
No 267
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=21.76 E-value=1.7e+02 Score=25.38 Aligned_cols=66 Identities=27% Similarity=0.257 Sum_probs=40.0
Q ss_pred hcCCCeEEEecccccc--cchhh-hHhHhhhCCeeEEeecCCCCcceeec-CCCCccCcccCCHHHHHHHHHH
Q 023717 115 LGRTPVAVVSAGIKSI--LDIPR-TLEYLETHGVCVAAYKTNEFPAFFTE-TSGSKVPCRVDSPEDCARLIDV 183 (278)
Q Consensus 115 L~rtpV~VVcaG~KsI--LDi~~-TLE~LET~GV~V~gy~t~~fPaFy~~-~Sg~~~~~r~d~~~e~A~~~~~ 183 (278)
++.+.+.|..+..-.. .-.|. .+|+| ..|+||++......+.+... ..|+-++ .+|++++++.+..
T Consensus 292 ~~~~di~i~~~~~~~~~~~~~p~~~~Ea~-~~G~pvi~~~~~~~~~~~~~~~~g~~~~--~~~~~~l~~~i~~ 361 (394)
T cd03794 292 LAAADVGLVPLKPGPAFEGVSPSKLFEYM-AAGKPVLASVDGESAELVEEAGAGLVVP--PGDPEALAAAILE 361 (394)
T ss_pred HHhhCeeEEeccCcccccccCchHHHHHH-HCCCcEEEecCCCchhhhccCCcceEeC--CCCHHHHHHHHHH
Confidence 5666677766655443 22222 35555 35999999987777766655 3444433 3477787776654
No 268
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=21.71 E-value=3.8e+02 Score=24.50 Aligned_cols=68 Identities=16% Similarity=0.098 Sum_probs=39.5
Q ss_pred HHHHHHHHCCCcEEEeccccccc------CCCcccccccc--c----hhhhc--CCCeEEEecccccccchhhhHhHhhh
Q 023717 77 ATMFFASMVGIPVFVTGGIGGVH------RHGEHTMDISS--D----LTELG--RTPVAVVSAGIKSILDIPRTLEYLET 142 (278)
Q Consensus 77 aTm~lA~~aGI~VFaTGGIGGVH------rg~~~t~DiSa--D----L~eL~--rtpV~VVcaG~KsILDi~~TLE~LET 142 (278)
.+..+|+..|++|++|..--.-. -|+...+|-+. | +.++. ...+++=|.|.++ +...++.|-.
T Consensus 167 ~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~g~~~---~~~~~~~l~~ 243 (338)
T cd08295 167 LVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNVGGKM---LDAVLLNMNL 243 (338)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECCCHHH---HHHHHHHhcc
Confidence 45668999999999876411000 12222333221 2 23332 2457777888643 4677888988
Q ss_pred CCeeE
Q 023717 143 HGVCV 147 (278)
Q Consensus 143 ~GV~V 147 (278)
.|.-|
T Consensus 244 ~G~iv 248 (338)
T cd08295 244 HGRIA 248 (338)
T ss_pred CcEEE
Confidence 88755
No 269
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=21.61 E-value=5.1e+02 Score=24.14 Aligned_cols=48 Identities=17% Similarity=0.264 Sum_probs=24.6
Q ss_pred CeeEEeecCCCCcceeecCCCCccCcccCCHHHHHHHHHHHHhcCCCCeEEEEeCCCc
Q 023717 144 GVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPR 201 (278)
Q Consensus 144 GV~V~gy~t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~ 201 (278)
.|.+.||.. +.+.+|...+-+ +. +- .+- .+..-..+|+| +++.+|+|.
T Consensus 257 ~v~~~g~~~-~~~~l~~~aD~~-v~-~~-gg~----t~~EA~a~g~P--vI~~~~~~g 304 (380)
T PRK13609 257 ALKVFGYVE-NIDELFRVTSCM-IT-KP-GGI----TLSEAAALGVP--VILYKPVPG 304 (380)
T ss_pred cEEEEechh-hHHHHHHhccEE-Ee-CC-Cch----HHHHHHHhCCC--EEECCCCCC
Confidence 489999864 466666544322 21 10 011 11122234766 677688885
No 270
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=21.59 E-value=2.7e+02 Score=28.03 Aligned_cols=24 Identities=29% Similarity=0.309 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHCCCcccEEEEEcCc
Q 023717 6 NFETAKEVEAIVRNNGAVPATIAILEGL 33 (278)
Q Consensus 6 Nle~A~~~E~~vR~~GavPATIaii~G~ 33 (278)
-++.++++-+++++.|+ .-+||.+
T Consensus 336 ~~~~a~~l~~~~~~~~~----~liind~ 359 (502)
T PLN02898 336 FIEEAKACLAICRSYGV----PLLINDR 359 (502)
T ss_pred HHHHHHHHHHHHHHhCC----EEEEcCh
Confidence 46778888888888874 2455554
No 271
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=21.57 E-value=5.4e+02 Score=22.32 Aligned_cols=36 Identities=31% Similarity=0.460 Sum_probs=23.6
Q ss_pred HCCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecc
Q 023717 84 MVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAG 126 (278)
Q Consensus 84 ~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG 126 (278)
+.|=.+++|||-||+-+ .+..-|.+.+- .|++++..
T Consensus 10 ~~~k~ilItGa~g~IG~------~la~~l~~~G~-~V~~~~r~ 45 (259)
T PRK08213 10 LSGKTALVTGGSRGLGL------QIAEALGEAGA-RVVLSARK 45 (259)
T ss_pred cCCCEEEEECCCchHHH------HHHHHHHHcCC-EEEEEeCC
Confidence 34557999999999833 56666665443 46666553
No 272
>PRK08643 acetoin reductase; Validated
Probab=21.50 E-value=5.3e+02 Score=22.24 Aligned_cols=30 Identities=37% Similarity=0.409 Sum_probs=19.0
Q ss_pred cEEEecccccccCCCccccccccchhhhcCCCeEEEe
Q 023717 88 PVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVS 124 (278)
Q Consensus 88 ~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVc 124 (278)
.+++|||-||+-+ .+...|.+.+- .|++++
T Consensus 4 ~~lItGas~giG~------~la~~l~~~G~-~v~~~~ 33 (256)
T PRK08643 4 VALVTGAGQGIGF------AIAKRLVEDGF-KVAIVD 33 (256)
T ss_pred EEEEECCCChHHH------HHHHHHHHCCC-EEEEEe
Confidence 4789999999833 56666665543 244443
No 273
>PLN02335 anthranilate synthase
Probab=21.48 E-value=69 Score=28.94 Aligned_cols=31 Identities=19% Similarity=0.125 Sum_probs=17.0
Q ss_pred eEEEecccccccchhhhHhHhhhCC--eeEEee
Q 023717 120 VAVVSAGIKSILDIPRTLEYLETHG--VCVAAY 150 (278)
Q Consensus 120 V~VVcaG~KsILDi~~TLE~LET~G--V~V~gy 150 (278)
-+|++-|+.+--|.+..+++++..| +||+|.
T Consensus 65 ~iVisgGPg~p~d~~~~~~~~~~~~~~~PiLGI 97 (222)
T PLN02335 65 GVLISPGPGTPQDSGISLQTVLELGPLVPLFGV 97 (222)
T ss_pred EEEEcCCCCChhhccchHHHHHHhCCCCCEEEe
Confidence 4555556665555555555554443 566554
No 274
>PRK06198 short chain dehydrogenase; Provisional
Probab=21.47 E-value=5.3e+02 Score=22.24 Aligned_cols=74 Identities=23% Similarity=0.358 Sum_probs=39.9
Q ss_pred HCCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCcceeecCC
Q 023717 84 MVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETS 163 (278)
Q Consensus 84 ~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~S 163 (278)
+.+=.+++|||-||+.+ .+..-|.+.+-..|++++.-... .+.+.+.|...|..+.-
T Consensus 4 ~~~k~vlItGa~g~iG~------~la~~l~~~G~~~V~~~~r~~~~---~~~~~~~l~~~~~~~~~-------------- 60 (260)
T PRK06198 4 LDGKVALVTGGTQGLGA------AIARAFAERGAAGLVICGRNAEK---GEAQAAELEALGAKAVF-------------- 60 (260)
T ss_pred CCCcEEEEeCCCchHHH------HHHHHHHHCCCCeEEEEcCCHHH---HHHHHHHHHhcCCeEEE--------------
Confidence 34556899999999854 44444444444446666553322 23344455433332211
Q ss_pred CCccCcccCCHHHHHHHHHH
Q 023717 164 GSKVPCRVDSPEDCARLIDV 183 (278)
Q Consensus 164 g~~~~~r~d~~~e~A~~~~~ 183 (278)
.+..+.+++++.+++..
T Consensus 61 ---~~~D~~~~~~~~~~~~~ 77 (260)
T PRK06198 61 ---VQADLSDVEDCRRVVAA 77 (260)
T ss_pred ---EEccCCCHHHHHHHHHH
Confidence 13345667777777654
No 275
>PF04722 Ssu72: Ssu72-like protein; InterPro: IPR006811 The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle. Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB []. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs [].; GO: 0004721 phosphoprotein phosphatase activity, 0006397 mRNA processing, 0005634 nucleus; PDB: 3O2S_B 3O2Q_E 3FMV_H 3OMW_D 3P9Y_B 3FDF_A 3OMX_A.
Probab=21.36 E-value=86 Score=28.84 Aligned_cols=30 Identities=33% Similarity=0.417 Sum_probs=23.1
Q ss_pred CeEEEecccccccchhhhHh---HhhhCCeeEEeecCC
Q 023717 119 PVAVVSAGIKSILDIPRTLE---YLETHGVCVAAYKTN 153 (278)
Q Consensus 119 pV~VVcaG~KsILDi~~TLE---~LET~GV~V~gy~t~ 153 (278)
.++||||.- ..|.+| .|...|-+|..|||.
T Consensus 3 ~~avVCasN-----~NRSMEAH~~L~~~G~~V~SfGTG 35 (195)
T PF04722_consen 3 RFAVVCASN-----QNRSMEAHNVLKKAGFNVRSFGTG 35 (195)
T ss_dssp EEEEEESSS-----SSHHHHHHHHHHHTT-EEEEEE-S
T ss_pred eEEEEccCC-----CCcCHHHHHHHHHCCCceEeecCC
Confidence 479999963 567776 699999999999986
No 276
>TIGR01072 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
Probab=21.28 E-value=2.2e+02 Score=27.19 Aligned_cols=118 Identities=14% Similarity=0.137 Sum_probs=65.0
Q ss_pred HHHHHHHHHHCCCcEEEecc-----cccccCCCccccc-cccchhh-------hcCCCeEEEecccccccchhhhHhHhh
Q 023717 75 VSATMFFASMVGIPVFVTGG-----IGGVHRHGEHTMD-ISSDLTE-------LGRTPVAVVSAGIKSILDIPRTLEYLE 141 (278)
Q Consensus 75 VaaTm~lA~~aGI~VFaTGG-----IGGVHrg~~~t~D-iSaDL~e-------L~rtpV~VVcaG~KsILDi~~TLE~LE 141 (278)
+..++.+-+..|++|..+.| ++|--+|.+.++| .|.+... ++..++.+ .|..+.-|+..|++.|+
T Consensus 123 ~~~~i~~L~~~G~~v~~~~~~~~v~~~~~l~~~~~~l~~~~s~~~~~ll~aa~~~~~~~~i--~~~~~~~~i~~~~~~L~ 200 (416)
T TIGR01072 123 VDLHLKGLKALGAEIVIEDGYVYASAKGRLVGAHIVLDKVSVGATENIIMAAVLAEGTTVI--ENAAREPEIVDLCEFLN 200 (416)
T ss_pred HHHHHHHHHHCCCEEEEECCEEEEEecCcceeeEEecCCCCHHHHHHHHHHHHhCCCcEEE--ecCCcCcCHHHHHHHHH
Confidence 44577788999999854432 1232345555566 4444331 56666554 45567788989999999
Q ss_pred hCCeeEEeecCCCCcceeecCCC-Cc-cCcccC-CHHHHHHHHHHHHhcCCCCeEEEEeCC
Q 023717 142 THGVCVAAYKTNEFPAFFTETSG-SK-VPCRVD-SPEDCARLIDVNMKLKLGSGLVIGVPI 199 (278)
Q Consensus 142 T~GV~V~gy~t~~fPaFy~~~Sg-~~-~~~r~d-~~~e~A~~~~~~~~l~l~~g~lvanPi 199 (278)
..|+.|-..+. ..|.....+ ++ .++.+. |...++-++-+-.-+ .+.+.|.|+-
T Consensus 201 ~~G~~v~~~~~---~~l~I~g~~~~~~~~~~v~~D~~~a~~~l~a~~l~--~g~~~i~~~~ 256 (416)
T TIGR01072 201 KMGAKITGAGS---NTITIEGVEKLHGTEHSVIPDRIEAGTFLVAAAIT--GGEITIKNVR 256 (416)
T ss_pred HCCCEEEEcCC---CEEEEeCCCcccCcEEEEcCCHHHHHHHHHHHHHc--CCeEEEEecC
Confidence 99999963221 233333222 11 122222 333444444443333 4567776643
No 277
>PRK08655 prephenate dehydrogenase; Provisional
Probab=21.26 E-value=92 Score=31.03 Aligned_cols=62 Identities=26% Similarity=0.303 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHCCCcccEEEEEcCceeec----------------------------CCHHHHHHHHhcCCCcccccccc
Q 023717 9 TAKEVEAIVRNNGAVPATIAILEGLPCVG----------------------------LSTEELERLAKLGSKAQKTARRD 60 (278)
Q Consensus 9 ~A~~~E~~vR~~GavPATIaii~G~i~VG----------------------------l~~~el~~la~~~~~~~K~srRD 60 (278)
+.++.+.+..+-|-.=+--=+..|++||| |+++||.+.=. +-...++||
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~fp~~~RD 364 (437)
T PRK08655 288 LNQEFEKLLKSIGKEIGLKHIYSGKIHVGILKKVTPDYVTLKKNNKEIKLKISNIRLLSEKELREWKK---KNLEKYVRD 364 (437)
T ss_pred HHHHHHHHHHhhcceeeeEeecCCcEEEEEEEEecCCeEEEeeCCcEEEEEeeeeecCCHHHHHHHHH---hcCCcccee
Confidence 55677888888887766666668999999 88999987733 347889999
Q ss_pred hHHHHhcCCCchh
Q 023717 61 IAHVVATRGNGAT 73 (278)
Q Consensus 61 l~~~~a~~~~GaT 73 (278)
|+..+.++.+-+.
T Consensus 365 is~~v~~~~~~~~ 377 (437)
T PRK08655 365 ISVLFPKGADPEV 377 (437)
T ss_pred EEEEECCCCCHHH
Confidence 9999888766443
No 278
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=21.23 E-value=4.6e+02 Score=23.15 Aligned_cols=91 Identities=16% Similarity=0.116 Sum_probs=45.8
Q ss_pred chhhhHhHhhhCCeeEEeecCCCCcceeecCCCCcc-CcccC-CHHHHHHHHHHHHhcCCCCeEEEEe--CCCccCCCCh
Q 023717 132 DIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKV-PCRVD-SPEDCARLIDVNMKLKLGSGLVIGV--PIPREHAASG 207 (278)
Q Consensus 132 Di~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~~~-~~r~d-~~~e~A~~~~~~~~l~l~~g~lvan--PiP~e~~~~~ 207 (278)
+...-...|+..|+.|.++...- ..+....-+..+ |-+.+ ..+..-+.++....||.+ .|... ..|.+ .+.
T Consensus 40 ~~~~l~~~l~~~gl~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~~--~i~~~~g~~~~~--~~~ 114 (254)
T TIGR03234 40 DAEALKARLAAAGLEQVLFNLPA-GDWAAGERGIACLPGREEEFREGVALAIAYARALGCP--QVNCLAGKRPAG--VSP 114 (254)
T ss_pred CHHHHHHHHHHcCCeEEEEeCCC-CccccCCCccccCCccHHHHHHHHHHHHHHHHHhCCC--EEEECcCCCCCC--CCH
Confidence 45555678999999999985221 111111111100 11111 112333566666777654 33333 23332 222
Q ss_pred H----HHHHHHHHHHHHHHHcCCC
Q 023717 208 R----VIESAIQSALREAREKNIT 227 (278)
Q Consensus 208 ~----~i~~~i~~Al~ea~~~gi~ 227 (278)
+ .+-+.+++....|++.||.
T Consensus 115 ~~~~~~~~~~l~~l~~~A~~~gi~ 138 (254)
T TIGR03234 115 EEARATLVENLRYAADALDRIGLT 138 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCE
Confidence 2 3335577777889998884
No 279
>COG1798 DPH5 Diphthamide biosynthesis methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=21.22 E-value=1.2e+02 Score=29.17 Aligned_cols=55 Identities=29% Similarity=0.168 Sum_probs=41.9
Q ss_pred cCCHHHHHHHHhcCCCcccccccchHHH------HhcC----------CCchhhHHHHHHHHHHCCCcEEEec
Q 023717 37 GLSTEELERLAKLGSKAQKTARRDIAHV------VATR----------GNGATTVSATMFFASMVGIPVFVTG 93 (278)
Q Consensus 37 Gl~~~el~~la~~~~~~~K~srRDl~~~------~a~~----------~~GaTTVaaTm~lA~~aGI~VFaTG 93 (278)
|-+-+.|+++.. +++.-+||+|+..- .|++ -..|||=+.-++-|+..||+|=+-=
T Consensus 40 ~~~~e~le~~~g--kev~~~~R~dlE~~~~~il~~a~~~~Vall~~GDpmvATTH~~L~~~A~~~Gi~v~vIh 110 (260)
T COG1798 40 GSNLEKLEELIG--KEVILLDREDLEENSRSILDRAKDKDVALLVAGDPMVATTHVDLRIEAKRRGIEVRVIH 110 (260)
T ss_pred cchHHHHHHHhC--CceEeccHHHHhhcchhHHHHHhcCCEEEEecCCcceehhHHHHHHHHHHcCCcEEEEc
Confidence 334788888875 57999999998774 2332 2478999999999999999987754
No 280
>PRK13017 dihydroxy-acid dehydratase; Provisional
Probab=21.20 E-value=2.3e+02 Score=30.13 Aligned_cols=126 Identities=19% Similarity=0.214 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHCCCccc---EEEEEcCceeecCCHHHHHHHHhcCCCcccccccchHHHH-----hcCCCch------
Q 023717 7 FETAKEVEAIVRNNGAVPA---TIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVV-----ATRGNGA------ 72 (278)
Q Consensus 7 le~A~~~E~~vR~~GavPA---TIaii~G~i~VGl~~~el~~la~~~~~~~K~srRDl~~~~-----a~~~~Ga------ 72 (278)
-+++..+.+-||++|.+|- ||++-||.-+=.+ =.||--|+..+ +...+|-
T Consensus 67 ~~la~~vk~gI~~aGG~p~ef~ti~v~d~~~~~~~----------------l~sRelIAd~iE~~~~a~~~Dg~V~i~gC 130 (596)
T PRK13017 67 LELAERVKEGIRDAGGIPMEFPVHPIQETGKRPTA----------------ALDRNLAYLGLVEILYGYPLDGVVLTTGC 130 (596)
T ss_pred HHHHHHHHHHHHHcCCeeEecccccccccCCCccc----------------ccCHHHHHHHHHHHHhcCCcceEEEeccC
Confidence 4789999999999999997 5555554322111 12332233222 2333433
Q ss_pred -hhHHHHHHHHHHCCCc-EEEeccc--ccccCCCccccccccchhhh-cCCCeEEEecccccccchhhhHhHhhhCCeeE
Q 023717 73 -TTVSATMFFASMVGIP-VFVTGGI--GGVHRHGEHTMDISSDLTEL-GRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 147 (278)
Q Consensus 73 -TTVaaTm~lA~~aGI~-VFaTGGI--GGVHrg~~~t~DiSaDL~eL-~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V 147 (278)
-|+-|.|+.|.+.+|| ||++||- -|.|+|. ..+-..|.-|. ++ ..+|- +|. ..|+.+|...+|-
T Consensus 131 DK~~PG~lMaaarlniP~i~v~GG~m~~G~~~g~--~~~~~~~~~e~~g~-----~~~G~---i~~-eel~~~e~~acp~ 199 (596)
T PRK13017 131 DKTTPACLMAAATVDLPAIVLSGGPMLDGWHEGE--RVGSGTVIWKAREL-----LAAGE---IDY-EEFMELVASSAPS 199 (596)
T ss_pred CCccHHHHHHHHhcCCCEEEEeCCCcCCCCCCCc--CcccchhHHHHHHH-----HHcCC---CCH-HHHHHHHHhcCCC
Confidence 3667788888888998 7999994 6667764 33211232221 11 22342 222 2467778887775
Q ss_pred EeecCCCCcceeecCC
Q 023717 148 AAYKTNEFPAFFTETS 163 (278)
Q Consensus 148 ~gy~t~~fPaFy~~~S 163 (278)
.| .|...||..|
T Consensus 200 ~G----sC~gmgTANT 211 (596)
T PRK13017 200 VG----HCNTMGTAST 211 (596)
T ss_pred CC----ccccccHHHH
Confidence 54 4566666554
No 281
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.17 E-value=7.4e+02 Score=24.28 Aligned_cols=101 Identities=19% Similarity=0.285 Sum_probs=60.5
Q ss_pred CCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCcceeecCCC
Q 023717 85 VGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSG 164 (278)
Q Consensus 85 aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg 164 (278)
+|=-|..|||=+|.-| -+..++..++- -++++--=.++ ...|.+.+...| .+-+| .
T Consensus 37 ~g~~vLITGgg~GlGr------~ialefa~rg~-~~vl~Din~~~---~~etv~~~~~~g-~~~~y--------~----- 92 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGR------LIALEFAKRGA-KLVLWDINKQG---NEETVKEIRKIG-EAKAY--------T----- 92 (300)
T ss_pred cCCEEEEeCCCchHHH------HHHHHHHHhCC-eEEEEeccccc---hHHHHHHHHhcC-ceeEE--------E-----
Confidence 4556899999999966 45555555444 23333222232 245777777665 33333 2
Q ss_pred CccCcccCCHHHHHHHHHH-HHhcCCCCeEEEEe----CCCccCCCChHHHHHHH
Q 023717 165 SKVPCRVDSPEDCARLIDV-NMKLKLGSGLVIGV----PIPREHAASGRVIESAI 214 (278)
Q Consensus 165 ~~~~~r~d~~~e~A~~~~~-~~~l~l~~g~lvan----PiP~e~~~~~~~i~~~i 214 (278)
..+.+.+|+.+..+. +++.| +=-+||-| |.-.=.++++++|++.+
T Consensus 93 ----cdis~~eei~~~a~~Vk~e~G-~V~ILVNNAGI~~~~~ll~~~d~ei~k~~ 142 (300)
T KOG1201|consen 93 ----CDISDREEIYRLAKKVKKEVG-DVDILVNNAGIVTGKKLLDCSDEEIQKTF 142 (300)
T ss_pred ----ecCCCHHHHHHHHHHHHHhcC-CceEEEeccccccCCCccCCCHHHHHHHH
Confidence 245678888888774 44455 66667765 34444568999999843
No 282
>PRK04155 chaperone protein HchA; Provisional
Probab=21.11 E-value=19 Score=34.25 Aligned_cols=39 Identities=23% Similarity=0.417 Sum_probs=27.8
Q ss_pred EEEecccccccCCCccccccccchhhh------cCCCeEEEecccccccc
Q 023717 89 VFVTGGIGGVHRHGEHTMDISSDLTEL------GRTPVAVVSAGIKSILD 132 (278)
Q Consensus 89 VFaTGGIGGVHrg~~~t~DiSaDL~eL------~rtpV~VVcaG~KsILD 132 (278)
||..||.|+.+. +--|.++.+| ..-+|+-||.|+-..+.
T Consensus 151 V~iPGG~g~~~d-----L~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~ 195 (287)
T PRK04155 151 VFIPGGHGALIG-----LPESEDVAAALQWALDNDRFIITLCHGPAALLA 195 (287)
T ss_pred EEECCCCchHHH-----HhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHH
Confidence 799999988653 2335566654 35689999999965554
No 283
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=21.06 E-value=4.6e+02 Score=21.34 Aligned_cols=33 Identities=12% Similarity=0.112 Sum_probs=21.8
Q ss_pred CCeEEEecccccccchhhhHhHhhhCCeeEEeecC
Q 023717 118 TPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKT 152 (278)
Q Consensus 118 tpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t 152 (278)
...+|+..+...-. ...++++...|+|++.+..
T Consensus 58 ~~d~ii~~~~~~~~--~~~~~~~~~~~ip~v~~~~ 90 (269)
T cd01391 58 GVDGIIGPPSSSSA--LAVVELAAAAGIPVVSLDA 90 (269)
T ss_pred CCCEEEecCCCHHH--HHHHHHHHHcCCcEEEecC
Confidence 34555655554321 1257888999999999974
No 284
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=21.05 E-value=5.5e+02 Score=22.19 Aligned_cols=63 Identities=14% Similarity=0.081 Sum_probs=37.4
Q ss_pred HHHHHHHHCCCcEEEecccccccCCCccccccccchhh-h--cCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCC
Q 023717 77 ATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTE-L--GRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTN 153 (278)
Q Consensus 77 aTm~lA~~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~e-L--~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~ 153 (278)
+....|+..|+.+++..- + .. +. .++.+ | .+...+++++... + ...++.|++.|+||+.++++
T Consensus 31 gi~~~~~~~g~~~~v~~~-~----~~----~~-~~~~~~l~~~~~dgiii~~~~~---~-~~~~~~~~~~~ipvV~~~~~ 96 (275)
T cd06295 31 GIADALAERGYDLLLSFV-S----SP----DR-DWLARYLASGRADGVILIGQHD---Q-DPLPERLAETGLPFVVWGRP 96 (275)
T ss_pred HHHHHHHHcCCEEEEEeC-C----ch----hH-HHHHHHHHhCCCCEEEEeCCCC---C-hHHHHHHHhCCCCEEEECCc
Confidence 445668888988776531 1 10 11 22322 3 3445555554322 1 35589999999999999864
No 285
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=20.99 E-value=3e+02 Score=24.86 Aligned_cols=94 Identities=13% Similarity=0.128 Sum_probs=49.7
Q ss_pred cchhhhHhHhhhCCeeEEeecCCCCcceeecCCCCccCcccCCHHHHHHHHHHHHhcCCCCeEEEEeC-CC-c-cCCCCh
Q 023717 131 LDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVP-IP-R-EHAASG 207 (278)
Q Consensus 131 LDi~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanP-iP-~-e~~~~~ 207 (278)
-++..-...|+..|+.|.++.+..+-. |.-.+. .-..|-...+.+-+.++.-..||.+. +++.-. .+ . ..+-..
T Consensus 52 ~~~~~~~~~l~~~gl~i~~~~~~~~~~-~~l~~~-~~~~r~~~~~~~~~~i~~a~~lG~~~-v~~~~~~~~~~~~~~~~~ 128 (279)
T TIGR00542 52 EQRLALVNAIIETGVRIPSMCLSAHRR-FPLGSK-DKAVRQQGLEIMEKAIQLARDLGIRT-IQLAGYDVYYEEHDEETR 128 (279)
T ss_pred HHHHHHHHHHHHcCCCceeeecCCCcc-CcCCCc-CHHHHHHHHHHHHHHHHHHHHhCCCE-EEecCcccccCcCCHHHH
Confidence 345566678999999999886532111 111110 01112233445667777788888653 222211 11 1 111112
Q ss_pred HHHHHHHHHHHHHHHHcCCC
Q 023717 208 RVIESAIQSALREAREKNIT 227 (278)
Q Consensus 208 ~~i~~~i~~Al~ea~~~gi~ 227 (278)
+.+.+.+++....|++.||+
T Consensus 129 ~~~~~~l~~l~~~A~~~Gv~ 148 (279)
T TIGR00542 129 RRFREGLKEAVELAARAQVT 148 (279)
T ss_pred HHHHHHHHHHHHHHHHcCCE
Confidence 34455667778888888984
No 286
>PRK08462 biotin carboxylase; Validated
Probab=20.90 E-value=5.2e+02 Score=25.20 Aligned_cols=17 Identities=24% Similarity=0.094 Sum_probs=10.6
Q ss_pred ChHHHHHHHHHHHHHHH
Q 023717 206 SGRVIESAIQSALREAR 222 (278)
Q Consensus 206 ~~~~i~~~i~~Al~ea~ 222 (278)
+.++++++++++..++.
T Consensus 175 ~~~eL~~~~~~~~~~~~ 191 (445)
T PRK08462 175 DESDLENLYLAAESEAL 191 (445)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 45666777766665544
No 287
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=20.78 E-value=1e+02 Score=27.95 Aligned_cols=46 Identities=22% Similarity=0.326 Sum_probs=36.4
Q ss_pred ccccccchhhhcC-CCeEEEecc---cccccchhhhHhHhhhCCeeEEee
Q 023717 105 TMDISSDLTELGR-TPVAVVSAG---IKSILDIPRTLEYLETHGVCVAAY 150 (278)
Q Consensus 105 t~DiSaDL~eL~r-tpV~VVcaG---~KsILDi~~TLE~LET~GV~V~gy 150 (278)
.-.-|-||.+|+. .|++|+|-= --++++.+.-.+|=+.+|.|++.-
T Consensus 138 htEaavdLa~lAGl~p~avi~eil~~dG~~~~~~~~~~fA~~~~l~~vsi 187 (194)
T PF00926_consen 138 HTEAAVDLARLAGLSPVAVICEILDDDGDMARRDELEEFAKKHGLPIVSI 187 (194)
T ss_dssp HHHHHHHHHHHTTS-SBEEEEEBBETTSSBHCHHHHHHHHHHTT-EEEEH
T ss_pred hHHHHHHHHHHhCCCCcEEEEEEeCCCCCcCCHHHHHHHHHHcCCcEEEH
Confidence 4478999999998 599999942 227889999999999999999864
No 288
>PRK07985 oxidoreductase; Provisional
Probab=20.77 E-value=6.4e+02 Score=22.90 Aligned_cols=17 Identities=35% Similarity=0.569 Sum_probs=13.5
Q ss_pred HCCCcEEEecccccccC
Q 023717 84 MVGIPVFVTGGIGGVHR 100 (278)
Q Consensus 84 ~aGI~VFaTGGIGGVHr 100 (278)
+.|=.+++|||-||+-+
T Consensus 47 ~~~k~vlITGas~gIG~ 63 (294)
T PRK07985 47 LKDRKALVTGGDSGIGR 63 (294)
T ss_pred cCCCEEEEECCCCcHHH
Confidence 45667999999999843
No 289
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=20.64 E-value=2.4e+02 Score=25.04 Aligned_cols=62 Identities=6% Similarity=0.027 Sum_probs=47.3
Q ss_pred HHHHHCCCcEEEecccccccCCCccccccccchhhh---cCCCeEEEecccccccchhhhHhHhhhCCeeEEeecC
Q 023717 80 FFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTEL---GRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKT 152 (278)
Q Consensus 80 ~lA~~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL---~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t 152 (278)
-..+..|+..+-+ .| ...+++.-|..|+ .+..+.|++||=-+. -.=++.|..+|+.|+||+.
T Consensus 73 ~~l~~~Gf~pv~~-------kG-~~Dv~laIDame~~~~~~iD~~vLvSgD~DF---~~Lv~~lre~G~~V~v~g~ 137 (160)
T TIGR00288 73 EAVVNQGFEPIIV-------AG-DVDVRMAVEAMELIYNPNIDAVALVTRDADF---LPVINKAKENGKETIVIGA 137 (160)
T ss_pred HHHHHCCceEEEe-------cC-cccHHHHHHHHHHhccCCCCEEEEEeccHhH---HHHHHHHHHCCCEEEEEeC
Confidence 3455688887643 33 4567778999999 577799999998654 5557889999999999995
No 290
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.60 E-value=6.6e+02 Score=22.98 Aligned_cols=93 Identities=11% Similarity=0.003 Sum_probs=50.3
Q ss_pred chhhhHhHhhhCCeeEEeecCCCCcceeecCCCCccCcccCCHHHHHHHHHHHHhcCCC-CeEEEEeCCCccCCCChHHH
Q 023717 132 DIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLG-SGLVIGVPIPREHAASGRVI 210 (278)
Q Consensus 132 Di~~TLE~LET~GV~V~gy~t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~-~g~lvanPiP~e~~~~~~~i 210 (278)
.+..++|++...|.-.+=+ |++...... .+.-++.++.++-+...+.++. ..+.+--|-+-..+-+.+++
T Consensus 12 ~~~~a~~~~~~~G~~~~qi--------f~~~P~~w~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~iNlas~~~~~ 82 (274)
T TIGR00587 12 GLQAAYNRAAEIGATAFMF--------FLKSPRWWR-RPMLEEEVIDWFKAALETNKNLSQIVLVHAPYLINLASPDEEK 82 (274)
T ss_pred CHHHHHHHHHHhCCCEEEE--------EecCccccC-CCCCCHHHHHHHHHHHHHcCCCCcceeccCCeeeecCCCCHHH
Confidence 4577888888888766543 554443332 2444566666665555555543 22333333322222223333
Q ss_pred H----HHHHHHHHHHHHcCCCCccCCh
Q 023717 211 E----SAIQSALREAREKNITGNAETP 233 (278)
Q Consensus 211 ~----~~i~~Al~ea~~~gi~Gk~vTP 233 (278)
. +.+.++++.|++-|...=-+||
T Consensus 83 r~~sv~~~~~~i~~A~~lga~~vv~H~ 109 (274)
T TIGR00587 83 EEKSLDVLDEELKRCELLGIMLYNFHP 109 (274)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECC
Confidence 3 3477788888888876544544
No 291
>PLN02979 glycolate oxidase
Probab=20.56 E-value=2.3e+02 Score=28.27 Aligned_cols=102 Identities=17% Similarity=0.184 Sum_probs=57.7
Q ss_pred CceeecCCHHHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCCc-ccccccc
Q 023717 32 GLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGE-HTMDISS 110 (278)
Q Consensus 32 G~i~VGl~~~el~~la~~~~~~~K~srRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrg~~-~t~DiSa 110 (278)
+.+.=.++.++|+.|-+.. ++|..+ |+. .+ ..+...|..+|++.+.-.|-||--.+.- .|+|.=.
T Consensus 204 ~~~~~~ltW~dl~wlr~~~---------~~Pviv-KgV---~~-~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ 269 (366)
T PLN02979 204 GQIDRTLSWKDVQWLQTIT---------KLPILV-KGV---LT-GEDARIAIQAGAAGIIVSNHGARQLDYVPATISALE 269 (366)
T ss_pred hcCCCCCCHHHHHHHHhcc---------CCCEEe-ecC---CC-HHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHH
Confidence 3333457889999886532 233322 222 12 3566778888888888888887322111 2333333
Q ss_pred chh-hh-cCCCeEEEecccccccchhhhHhHhhhCCeeEEeecC
Q 023717 111 DLT-EL-GRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKT 152 (278)
Q Consensus 111 DL~-eL-~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t 152 (278)
+.. ++ .+.| ++++.|..+=.||-+.|- .|---++.+.
T Consensus 270 ei~~~~~~~~~-Vi~dGGIr~G~Di~KALA----LGAdaV~iGr 308 (366)
T PLN02979 270 EVVKATQGRIP-VFLDGGVRRGTDVFKALA----LGASGIFIGR 308 (366)
T ss_pred HHHHHhCCCCe-EEEeCCcCcHHHHHHHHH----cCCCEEEEcH
Confidence 332 22 2344 456788888888877763 3665565553
No 292
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=20.54 E-value=97 Score=25.11 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=27.2
Q ss_pred CeEEEecccccccchhhhHhHhhhCCeeEEeecC
Q 023717 119 PVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKT 152 (278)
Q Consensus 119 pV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t 152 (278)
-++|+.+|.+-..--|...++|..+|+.|---.|
T Consensus 54 eiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T 87 (109)
T cd00248 54 DILLIGTGAEIAFLPRALRAALRAAGIGVEVMST 87 (109)
T ss_pred CEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCc
Confidence 3999999998877778888999999988764333
No 293
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=20.53 E-value=4.7e+02 Score=29.22 Aligned_cols=160 Identities=17% Similarity=0.193 Sum_probs=0.0
Q ss_pred EEEEE-cCceeecCCHHH-------HHHHHhcCCCcccccccchHHHHhcCCCchh-----hHHHHHHHHHHCCCc-EEE
Q 023717 26 TIAIL-EGLPCVGLSTEE-------LERLAKLGSKAQKTARRDIAHVVATRGNGAT-----TVSATMFFASMVGIP-VFV 91 (278)
Q Consensus 26 TIaii-~G~i~VGl~~~e-------l~~la~~~~~~~K~srRDl~~~~a~~~~GaT-----TVaaTm~lA~~aGI~-VFa 91 (278)
.|-|| .|..+||.+-|. +..|-+.+-.+.=+....-.........-.. |.-.-+.++++-+|+ |+.
T Consensus 556 kvlilG~G~~~ig~~~efdy~~v~~i~alk~~G~~vi~v~~npetvs~~~~~aD~~y~e~~~~e~v~~i~~~e~~dgVi~ 635 (1066)
T PRK05294 556 KVLVLGSGPNRIGQGIEFDYCCVHAVLALREAGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIIEKEKPKGVIV 635 (1066)
T ss_pred eEEEECccccccccccccchhHHHHHHHHHHCCCEEEEEeCCccccccccchhhheeecCCCHHHHHHHHHHcCCCEEEE
Q ss_pred ecccccccCCCccccccccchhhhcCCCeEEEecccccc---cchhhhHhHhhhCCeeEEeec--CC-----------CC
Q 023717 92 TGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSI---LDIPRTLEYLETHGVCVAAYK--TN-----------EF 155 (278)
Q Consensus 92 TGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsI---LDi~~TLE~LET~GV~V~gy~--t~-----------~f 155 (278)
+- |++....+...|.+++ +-++.+.+++| -|=.++-++|+.+|+|+.-|. ++ .|
T Consensus 636 ~~-------g~~~~~~la~~le~~G---i~ilg~s~~ai~~~~DK~~~~~~L~~~GIp~P~~~~~~s~ee~~~~~~~igy 705 (1066)
T PRK05294 636 QF-------GGQTPLKLAKALEAAG---VPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPNGTATSVEEALEVAEEIGY 705 (1066)
T ss_pred Ee-------CchhHHHHHHHHHHCC---CceeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCeEEECCHHHHHHHHHhcCC
Q ss_pred cceeec--CCCCccCcccCCHHHHHHHHHHHHhcCCCCeEEE
Q 023717 156 PAFFTE--TSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVI 195 (278)
Q Consensus 156 PaFy~~--~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lv 195 (278)
|-+.-+ .+|-+--+.+++.+|+.+.+...........+||
T Consensus 706 PvvVKP~~~~Gg~Gv~iv~~~eeL~~~~~~a~~~s~~~~vlI 747 (1066)
T PRK05294 706 PVLVRPSYVLGGRAMEIVYDEEELERYMREAVKVSPDHPVLI 747 (1066)
T ss_pred CeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhCCCCcEEE
No 294
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=20.51 E-value=3.6e+02 Score=22.14 Aligned_cols=79 Identities=13% Similarity=0.086 Sum_probs=44.3
Q ss_pred HHHHHHHHHHCCCcEEEecccccccCCC-ccccccccchhhhc--CCCeEEEeccc--ccccchhhhHhHhh---hCCee
Q 023717 75 VSATMFFASMVGIPVFVTGGIGGVHRHG-EHTMDISSDLTELG--RTPVAVVSAGI--KSILDIPRTLEYLE---THGVC 146 (278)
Q Consensus 75 VaaTm~lA~~aGI~VFaTGGIGGVHrg~-~~t~DiSaDL~eL~--rtpV~VVcaG~--KsILDi~~TLE~LE---T~GV~ 146 (278)
+.+.+-+-+.+|++|..-..-||...+. ..++....++.++. +...++|+.|. +...+-+..+++|. .+|.+
T Consensus 15 ~~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~ 94 (166)
T TIGR01382 15 LLYPLDRLREAGHEVDTVSKEAGTTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRAPEYLRLNNKAVRLVREFVEKGKP 94 (166)
T ss_pred HHHHHHHHHHCCCEEEEEecCCCceeccCCceeeccCChhhCCHHHCcEEEECCCCCHHHhccCHHHHHHHHHHHHcCCE
Confidence 3444555567788886665555543321 11233333344433 46788888873 22223355666665 46899
Q ss_pred EEeecCC
Q 023717 147 VAAYKTN 153 (278)
Q Consensus 147 V~gy~t~ 153 (278)
+++..+.
T Consensus 95 i~~ic~G 101 (166)
T TIGR01382 95 VAAICHG 101 (166)
T ss_pred EEEEChH
Confidence 9988764
No 295
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=20.45 E-value=1.6e+02 Score=28.85 Aligned_cols=67 Identities=22% Similarity=0.364 Sum_probs=24.9
Q ss_pred HHHHHCCCcEEEecccccccC-CCccccccccchhh-hc-CCCeEEEecccccccchhhhHhHhhhCCeeEEeec
Q 023717 80 FFASMVGIPVFVTGGIGGVHR-HGEHTMDISSDLTE-LG-RTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYK 151 (278)
Q Consensus 80 ~lA~~aGI~VFaTGGIGGVHr-g~~~t~DiSaDL~e-L~-rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~ 151 (278)
..|..+|++-+..+|-||-.. ++..|+|.=.++.+ ++ +.|| .++.|+.+=+|+=+.| .+|...+|.+
T Consensus 240 ~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i-~~dgGir~g~Dv~kal----aLGA~~v~ig 309 (356)
T PF01070_consen 240 KRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPI-IADGGIRRGLDVAKAL----ALGADAVGIG 309 (356)
T ss_dssp HHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEE-EEESS--SHHHHHHHH----HTT-SEEEES
T ss_pred HHHHhcCCCEEEecCCCcccCccccccccccHHHHhhhcCCeeE-EEeCCCCCHHHHHHHH----HcCCCeEEEc
Confidence 334444444444444444322 22233333333333 22 2333 3344444444444433 2444444443
No 296
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=20.43 E-value=2.5e+02 Score=27.77 Aligned_cols=67 Identities=19% Similarity=0.318 Sum_probs=46.6
Q ss_pred CCcceeecCCCCccC-------cccCCHHHHHHHHHHHHhcCCCCeEEEEeCCCc-c-----CCCChHHHHHHHHHHHHH
Q 023717 154 EFPAFFTETSGSKVP-------CRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPR-E-----HAASGRVIESAIQSALRE 220 (278)
Q Consensus 154 ~fPaFy~~~Sg~~~~-------~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~-e-----~~~~~~~i~~~i~~Al~e 220 (278)
-+|-|.+.+...+-| ||+ +.+.+.+.+..-+++|+++=+||.++.|+ . .+.++ +..+.+|++.
T Consensus 27 I~PlFv~e~~~~~~~I~smPg~~r~-s~d~l~~~v~~~~~~Gi~~v~lFgv~~~~~KD~~gs~A~~~---~g~v~~air~ 102 (320)
T cd04823 27 ILPLFVHEGENQREPIPSMPGVFRL-SIDELLKEAEEAVDLGIPAVALFPVTPPELKSEDGSEAYNP---DNLVCRAIRA 102 (320)
T ss_pred eeeEEEecCCCCccccCCCCCceee-CHHHHHHHHHHHHHcCCCEEEEecCCCcccCCcccccccCC---CChHHHHHHH
Confidence 467787766544332 222 57888999999999999999999996544 1 23333 5678888887
Q ss_pred HHHc
Q 023717 221 AREK 224 (278)
Q Consensus 221 a~~~ 224 (278)
.++.
T Consensus 103 iK~~ 106 (320)
T cd04823 103 IKEA 106 (320)
T ss_pred HHHh
Confidence 7755
No 297
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=20.38 E-value=3.1e+02 Score=26.56 Aligned_cols=17 Identities=24% Similarity=0.452 Sum_probs=8.7
Q ss_pred hhhHhHhhhCCeeEEee
Q 023717 134 PRTLEYLETHGVCVAAY 150 (278)
Q Consensus 134 ~~TLE~LET~GV~V~gy 150 (278)
-.+-++|+.+|||+.-|
T Consensus 104 ~~~k~~l~~~gip~p~~ 120 (420)
T PRK00885 104 AFAKDFMARYGIPTAAY 120 (420)
T ss_pred HHHHHHHHHcCCCCCCe
Confidence 44445555555555444
No 298
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=20.32 E-value=1.2e+02 Score=28.72 Aligned_cols=30 Identities=13% Similarity=0.095 Sum_probs=23.5
Q ss_pred CCCChHHHHHHHHHHH---HHHHHcCCCCccCC
Q 023717 203 HAASGRVIESAIQSAL---REAREKNITGNAET 232 (278)
Q Consensus 203 ~~~~~~~i~~~i~~Al---~ea~~~gi~Gk~vT 232 (278)
.+|+.++|+++|++-. +.|++.|..|=+++
T Consensus 142 ~~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~ 174 (336)
T cd02932 142 RELTREEIAEVVDAFVAAARRAVEAGFDVIEIH 174 (336)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 4699999999887644 45556899999888
No 299
>PF07805 HipA_N: HipA-like N-terminal domain; InterPro: IPR012894 The members of this entry contain a region that is found towards the N terminus of the HipA protein expressed by various bacterial species (for example P23874 from SWISSPROT). This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis []. When expressed alone, it is toxic to bacterial cells [], but it is usually tightly associated with HipB [], and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products []. ; PDB: 2WIU_C 3HZI_A 3DNT_B 3FBR_A 3DNU_A 3DNV_A.
Probab=20.27 E-value=55 Score=24.60 Aligned_cols=62 Identities=24% Similarity=0.203 Sum_probs=29.7
Q ss_pred CCCcccEEEEEcCceeecCCHHHHHHHHhcCCCcccccccc-hHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecc
Q 023717 20 NGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRD-IAHVVATRGNGATTVSATMFFASMVGIPVFVTGG 94 (278)
Q Consensus 20 ~GavPATIaii~G~i~VGl~~~el~~la~~~~~~~K~srRD-l~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGG 94 (278)
.|+.|-....+++ -+..+...+ ....-+.|.+..+ .+..... =..+|.+|+.+||+|--|.=
T Consensus 3 ~G~qpK~~~~~~~-~~~~~~~~~-----~~~~~IvK~~~~~~~~~~~~n-------E~~~~~lA~~~Gi~v~~~~l 65 (81)
T PF07805_consen 3 GGAQPKLLLTLDP-GRWALPAGD-----APSTHIVKFPSSRDDPDLVEN-------EYACMRLARAAGIPVPETRL 65 (81)
T ss_dssp -SSSCEEEEEEET-TEEEEEETT--------SEEEE-S-CEEETTHHHH-------HHHHHHHHHHTT-----EEE
T ss_pred cccceeEEEEEcC-CceeecCCC-----CCceEEEeCCCcccccchHHH-------HHHHHHHHHHcCCCcCceEE
Confidence 4677777776654 111111111 1123577888877 4443332 24789999999999987764
No 300
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=20.23 E-value=3.6e+02 Score=23.88 Aligned_cols=67 Identities=18% Similarity=0.223 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHCCCcEEEecccc---------cccCCCccccc-----cccchhhhc---CCCeEEEecccccccchhhh
Q 023717 74 TVSATMFFASMVGIPVFVTGGIG---------GVHRHGEHTMD-----ISSDLTELG---RTPVAVVSAGIKSILDIPRT 136 (278)
Q Consensus 74 TVaaTm~lA~~aGI~VFaTGGIG---------GVHrg~~~t~D-----iSaDL~eL~---rtpV~VVcaG~KsILDi~~T 136 (278)
..-+++.+|...|++||+|.+-- |++ ..+| ....+.++. ...+++=|.|.++. ...
T Consensus 151 vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~g~~~~---~~~ 223 (323)
T cd05282 151 VGRMLIQLAKLLGFKTINVVRRDEQVEELKALGAD----EVIDSSPEDLAQRVKEATGGAGARLALDAVGGESA---TRL 223 (323)
T ss_pred HHHHHHHHHHHCCCeEEEEecChHHHHHHHhcCCC----EEecccchhHHHHHHHHhcCCCceEEEECCCCHHH---HHH
Confidence 44467889999999999986521 221 2222 233344442 35577778887764 344
Q ss_pred HhHhhhCCeeE
Q 023717 137 LEYLETHGVCV 147 (278)
Q Consensus 137 LE~LET~GV~V 147 (278)
+..|...|.-|
T Consensus 224 ~~~l~~~g~~v 234 (323)
T cd05282 224 ARSLRPGGTLV 234 (323)
T ss_pred HHhhCCCCEEE
Confidence 78888888766
No 301
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=20.09 E-value=3e+02 Score=23.65 Aligned_cols=84 Identities=19% Similarity=0.317 Sum_probs=54.8
Q ss_pred cCCCchhhHHHHHHHHHHCCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhC--C
Q 023717 67 TRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETH--G 144 (278)
Q Consensus 67 ~~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~--G 144 (278)
...+|..-+-..+..+..-|.+||.-||-=++ +.+..++|..+ |
T Consensus 29 ~rv~g~dl~~~l~~~~~~~~~~ifllG~~~~~----------------------------------~~~~~~~l~~~yP~ 74 (172)
T PF03808_consen 29 ERVTGSDLFPDLLRRAEQRGKRIFLLGGSEEV----------------------------------LEKAAANLRRRYPG 74 (172)
T ss_pred cccCHHHHHHHHHHHHHHcCCeEEEEeCCHHH----------------------------------HHHHHHHHHHHCCC
Confidence 45667777777777788888888887754332 23455678777 9
Q ss_pred eeEEeecCCCCcceeecCCCCccCcccCCHHHHHHHHHHHHhcCCCCeEEEEeCCCcc
Q 023717 145 VCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPRE 202 (278)
Q Consensus 145 V~V~gy~t~~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e 202 (278)
+.++|+....| +++|..+++..-.+.+ +.=++++.+.|.+
T Consensus 75 l~ivg~~~g~f-----------------~~~~~~~i~~~I~~~~-pdiv~vglG~PkQ 114 (172)
T PF03808_consen 75 LRIVGYHHGYF-----------------DEEEEEAIINRINASG-PDIVFVGLGAPKQ 114 (172)
T ss_pred eEEEEecCCCC-----------------ChhhHHHHHHHHHHcC-CCEEEEECCCCHH
Confidence 99999875444 3334344444333333 5668888899885
No 302
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=20.09 E-value=2.5e+02 Score=22.23 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=18.2
Q ss_pred CCCeEEEecc-cccccchhhhHhHhhhCCe
Q 023717 117 RTPVAVVSAG-IKSILDIPRTLEYLETHGV 145 (278)
Q Consensus 117 rtpV~VVcaG-~KsILDi~~TLE~LET~GV 145 (278)
..||+|+|.+ ..| .....+|...|.
T Consensus 72 ~~~ivv~C~~G~rs----~~aa~~L~~~G~ 97 (122)
T cd01526 72 DSPIYVVCRRGNDS----QTAVRKLKELGL 97 (122)
T ss_pred CCcEEEECCCCCcH----HHHHHHHHHcCC
Confidence 5799999955 433 345668888888
No 303
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=20.08 E-value=3.1e+02 Score=18.99 Aligned_cols=70 Identities=14% Similarity=0.078 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHCCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccch---hhhHhHhhhCCe---eE
Q 023717 74 TVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDI---PRTLEYLETHGV---CV 147 (278)
Q Consensus 74 TVaaTm~lA~~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi---~~TLE~LET~GV---~V 147 (278)
.+...+...+.+++++....--++.+.. ..++.+.++++++.|.-..-.. +..++++.+.+- ++
T Consensus 13 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~----------~~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~~~~~~~i 82 (115)
T cd01653 13 ELASPLDALREAGAEVDVVSPDGGPVES----------DVDLDDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPI 82 (115)
T ss_pred hhHHHHHHHHHCCCeEEEEcCCCCceec----------cCChhccCEEEECCCCCchhhhccCHHHHHHHHHHHHcCCEE
Confidence 4556677777888888777665554332 3456788888888887666554 677788777665 88
Q ss_pred EeecCC
Q 023717 148 AAYKTN 153 (278)
Q Consensus 148 ~gy~t~ 153 (278)
++-...
T Consensus 83 ~~~c~g 88 (115)
T cd01653 83 LGICLG 88 (115)
T ss_pred EEECch
Confidence 776543
Done!