Query 023719
Match_columns 278
No_of_seqs 352 out of 1875
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 06:09:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023719.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023719hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00688 rarD rarD protein. T 99.9 8.6E-21 1.9E-25 167.6 22.2 163 91-259 2-172 (256)
2 PRK15430 putative chlorampheni 99.9 1.6E-20 3.4E-25 169.6 22.2 180 88-273 5-191 (296)
3 PRK11689 aromatic amino acid e 99.8 7.7E-19 1.7E-23 158.5 21.6 170 90-264 3-187 (295)
4 PRK11272 putative DMT superfam 99.8 1.5E-18 3.2E-23 156.4 23.2 179 92-274 9-190 (292)
5 PLN00411 nodulin MtN21 family 99.8 1.1E-18 2.3E-23 161.3 22.4 186 89-274 11-231 (358)
6 PRK11453 O-acetylserine/cystei 99.8 7.3E-18 1.6E-22 152.4 22.5 173 92-272 5-185 (299)
7 TIGR00950 2A78 Carboxylate/Ami 99.8 6.5E-18 1.4E-22 148.9 19.4 168 103-274 1-171 (260)
8 PRK10532 threonine and homoser 99.8 5.4E-17 1.2E-21 146.3 21.5 175 89-273 10-187 (293)
9 TIGR03340 phn_DUF6 phosphonate 99.7 3.2E-16 6.9E-21 140.4 20.2 165 93-260 3-171 (281)
10 TIGR00817 tpt Tpt phosphate/ph 99.7 1E-15 2.2E-20 138.4 22.5 167 107-274 18-188 (302)
11 COG2510 Predicted membrane pro 99.7 4.9E-17 1.1E-21 125.6 11.2 132 92-224 4-138 (140)
12 PTZ00343 triose or hexose phos 99.7 3.2E-15 7E-20 138.1 25.0 184 90-274 48-242 (350)
13 COG0697 RhaT Permeases of the 99.7 3E-14 6.4E-19 126.5 23.0 177 89-266 5-186 (292)
14 KOG4510 Permease of the drug/m 99.7 1.2E-17 2.7E-22 143.9 0.8 184 89-275 36-233 (346)
15 PF00892 EamA: EamA-like trans 99.6 1.1E-14 2.4E-19 113.4 11.5 122 101-224 1-125 (126)
16 COG2962 RarD Predicted permeas 99.6 1.3E-13 2.9E-18 120.9 17.8 161 89-255 5-170 (293)
17 TIGR00776 RhaT RhaT L-rhamnose 99.5 6E-13 1.3E-17 119.9 18.6 173 92-270 2-187 (290)
18 TIGR00950 2A78 Carboxylate/Ami 99.5 1.1E-12 2.3E-17 115.6 17.9 133 88-221 125-260 (260)
19 PF06027 DUF914: Eukaryotic pr 99.4 1.2E-11 2.7E-16 112.8 19.5 188 89-276 11-211 (334)
20 PF13536 EmrE: Multidrug resis 99.4 1.8E-12 3.9E-17 100.6 11.7 105 125-230 2-111 (113)
21 COG5006 rhtA Threonine/homoser 99.4 3.9E-11 8.6E-16 103.2 18.0 174 92-275 13-190 (292)
22 PRK11689 aromatic amino acid e 99.4 2.4E-11 5.2E-16 109.7 17.3 133 90-226 155-288 (295)
23 PRK10532 threonine and homoser 99.4 5.3E-11 1.2E-15 107.3 18.1 136 89-226 146-282 (293)
24 PRK11272 putative DMT superfam 99.3 9.6E-11 2.1E-15 105.6 17.8 135 89-225 148-285 (292)
25 PLN00411 nodulin MtN21 family 99.3 2.8E-10 6.1E-15 105.4 18.3 136 90-226 188-329 (358)
26 TIGR03340 phn_DUF6 phosphonate 99.2 6.6E-11 1.4E-15 106.0 11.0 133 90-223 143-281 (281)
27 PRK11453 O-acetylserine/cystei 99.2 2.3E-09 4.9E-14 97.0 18.3 137 90-227 142-289 (299)
28 PRK15430 putative chlorampheni 99.1 4.4E-09 9.6E-14 95.0 15.9 134 94-227 152-287 (296)
29 TIGR00817 tpt Tpt phosphate/ph 99.1 3.1E-09 6.6E-14 96.1 14.1 137 89-226 143-294 (302)
30 COG0697 RhaT Permeases of the 99.0 1.7E-08 3.8E-13 89.4 17.9 134 90-226 153-288 (292)
31 TIGR00776 RhaT RhaT L-rhamnose 99.0 1.1E-08 2.3E-13 92.3 14.2 128 90-224 151-287 (290)
32 PF03151 TPT: Triose-phosphate 98.9 1.1E-07 2.3E-12 77.1 15.7 131 92-222 1-150 (153)
33 PRK15051 4-amino-4-deoxy-L-ara 98.9 8.4E-08 1.8E-12 74.2 14.1 65 161-225 45-109 (111)
34 PTZ00343 triose or hexose phos 98.9 1.2E-07 2.7E-12 87.7 17.4 135 90-224 193-347 (350)
35 KOG2765 Predicted membrane pro 98.9 2.3E-08 4.9E-13 90.7 11.8 121 150-270 156-285 (416)
36 COG5006 rhtA Threonine/homoser 98.9 8.8E-08 1.9E-12 82.8 14.6 132 89-221 146-278 (292)
37 PRK02971 4-amino-4-deoxy-L-ara 98.9 1.4E-07 3.1E-12 74.8 14.6 121 91-227 2-124 (129)
38 PF08449 UAA: UAA transporter 98.8 6.8E-07 1.5E-11 81.0 20.3 155 120-275 32-198 (303)
39 PF06800 Sugar_transport: Suga 98.5 3E-06 6.6E-11 75.0 13.3 121 87-212 134-254 (269)
40 PF04142 Nuc_sug_transp: Nucle 98.4 7.7E-06 1.7E-10 72.0 13.6 111 150-260 14-141 (244)
41 PF06027 DUF914: Eukaryotic pr 98.4 1.4E-05 3.1E-10 73.2 15.1 138 87-225 164-305 (334)
42 PF08449 UAA: UAA transporter 98.3 5.6E-05 1.2E-09 68.5 16.6 136 91-226 154-298 (303)
43 PF05653 Mg_trans_NIPA: Magnes 98.2 1.1E-05 2.4E-10 73.1 9.9 119 87-224 3-121 (300)
44 PRK10650 multidrug efflux syst 98.2 0.0001 2.2E-09 56.7 13.3 70 154-223 36-106 (109)
45 COG2962 RarD Predicted permeas 98.1 0.0002 4.4E-09 63.5 16.7 128 96-226 153-284 (293)
46 KOG2234 Predicted UDP-galactos 98.1 0.00064 1.4E-08 61.9 20.3 168 92-259 16-209 (345)
47 COG2076 EmrE Membrane transpor 98.1 2.9E-05 6.3E-10 59.0 9.3 70 155-224 32-102 (106)
48 PRK10452 multidrug efflux syst 98.1 3.1E-05 6.7E-10 60.6 9.6 69 157-225 34-103 (120)
49 PF04657 DUF606: Protein of un 98.1 0.00021 4.7E-09 57.3 14.8 129 93-222 3-138 (138)
50 PRK09541 emrE multidrug efflux 98.1 4.4E-05 9.6E-10 58.8 9.9 70 156-225 33-103 (110)
51 PRK11431 multidrug efflux syst 98.1 5.6E-05 1.2E-09 57.7 10.0 69 156-224 32-101 (105)
52 TIGR00688 rarD rarD protein. T 98.0 0.00019 4.2E-09 63.1 13.9 104 94-200 149-255 (256)
53 PF10639 UPF0546: Uncharacteri 98.0 3.2E-05 6.9E-10 59.6 7.1 110 97-223 2-112 (113)
54 PRK13499 rhamnose-proton sympo 98.0 0.00058 1.3E-08 62.8 16.6 136 87-225 3-153 (345)
55 KOG1441 Glucose-6-phosphate/ph 97.9 4.7E-05 1E-09 69.1 8.0 162 108-273 34-207 (316)
56 KOG1444 Nucleotide-sugar trans 97.8 0.0017 3.6E-08 58.4 16.3 182 93-275 14-201 (314)
57 KOG4510 Permease of the drug/m 97.8 1.9E-05 4.1E-10 69.1 3.2 134 90-224 190-324 (346)
58 KOG4314 Predicted carbohydrate 97.8 0.00014 3E-09 61.1 8.2 102 164-267 64-169 (290)
59 KOG3912 Predicted integral mem 97.7 0.0026 5.6E-08 56.3 14.8 121 154-274 87-219 (372)
60 PF06800 Sugar_transport: Suga 97.6 0.0026 5.6E-08 56.5 14.6 147 119-268 11-171 (269)
61 KOG2766 Predicted membrane pro 97.6 3E-06 6.5E-11 73.5 -4.0 185 90-277 17-210 (336)
62 PF00893 Multi_Drug_Res: Small 97.6 0.00034 7.4E-09 52.2 7.3 60 157-216 33-93 (93)
63 KOG1441 Glucose-6-phosphate/ph 97.4 0.00058 1.3E-08 62.1 8.2 136 89-225 161-307 (316)
64 PRK13499 rhamnose-proton sympo 97.4 0.0088 1.9E-07 55.1 15.7 138 87-225 170-341 (345)
65 KOG1581 UDP-galactose transpor 97.3 0.0051 1.1E-07 55.0 12.2 136 88-223 169-311 (327)
66 TIGR00803 nst UDP-galactose tr 97.3 0.004 8.7E-08 53.7 11.5 135 88-222 82-221 (222)
67 KOG2765 Predicted membrane pro 97.2 0.0039 8.5E-08 57.2 11.1 141 88-228 244-393 (416)
68 COG3238 Uncharacterized protei 97.1 0.051 1.1E-06 44.0 15.0 133 90-223 4-144 (150)
69 KOG2922 Uncharacterized conser 96.8 0.00066 1.4E-08 61.1 1.8 120 86-224 16-135 (335)
70 KOG1443 Predicted integral mem 96.5 0.0065 1.4E-07 54.5 6.5 115 154-268 85-204 (349)
71 KOG1581 UDP-galactose transpor 96.4 0.21 4.5E-06 45.0 15.0 156 119-275 50-216 (327)
72 COG4975 GlcU Putative glucose 96.4 0.00027 5.9E-09 61.3 -3.0 130 88-222 149-282 (288)
73 KOG1580 UDP-galactose transpor 96.2 0.03 6.4E-07 48.6 8.5 134 91-224 172-312 (337)
74 COG4975 GlcU Putative glucose 95.9 0.0032 6.9E-08 54.8 1.3 131 92-227 3-138 (288)
75 KOG1444 Nucleotide-sugar trans 95.9 0.095 2.1E-06 47.3 10.3 135 90-224 156-299 (314)
76 KOG1580 UDP-galactose transpor 95.7 0.058 1.3E-06 46.8 8.0 153 121-274 54-215 (337)
77 KOG1442 GDP-fucose transporter 94.9 0.034 7.4E-07 49.3 4.3 157 119-275 60-229 (347)
78 COG5070 VRG4 Nucleotide-sugar 94.6 0.31 6.7E-06 42.1 9.2 133 91-223 155-294 (309)
79 PF06379 RhaT: L-rhamnose-prot 94.2 3.1 6.7E-05 38.2 15.2 137 88-227 4-155 (344)
80 KOG1582 UDP-galactose transpor 94.1 0.64 1.4E-05 41.4 10.1 138 90-227 189-334 (367)
81 PF04142 Nuc_sug_transp: Nucle 93.5 3.7 8.1E-05 36.0 14.1 125 89-215 112-243 (244)
82 PRK02237 hypothetical protein; 93.2 1.7 3.7E-05 33.1 9.9 37 188-224 68-104 (109)
83 KOG1443 Predicted integral mem 93.2 2.4 5.1E-05 38.5 12.3 134 90-223 163-313 (349)
84 PF07857 DUF1632: CEO family ( 92.8 0.45 9.8E-06 42.1 7.3 126 92-224 1-133 (254)
85 KOG4831 Unnamed protein [Funct 92.0 1.3 2.9E-05 33.6 7.8 111 95-224 7-124 (125)
86 PF02694 UPF0060: Uncharacteri 90.7 1.5 3.2E-05 33.3 7.0 52 174-225 51-103 (107)
87 KOG1442 GDP-fucose transporter 90.2 0.32 7E-06 43.3 3.5 134 90-223 184-325 (347)
88 PF04342 DUF486: Protein of un 90.2 6.1 0.00013 30.0 9.8 53 172-224 54-107 (108)
89 COG1742 Uncharacterized conser 86.9 11 0.00025 28.5 10.2 39 188-226 67-105 (109)
90 KOG2766 Predicted membrane pro 85.9 1 2.2E-05 39.8 3.9 134 87-223 162-297 (336)
91 COG5070 VRG4 Nucleotide-sugar 79.0 17 0.00036 31.7 8.6 106 168-273 83-197 (309)
92 KOG2234 Predicted UDP-galactos 76.2 66 0.0014 29.8 16.0 132 88-224 180-321 (345)
93 PF06570 DUF1129: Protein of u 75.8 48 0.001 28.1 12.4 20 93-112 87-106 (206)
94 PF11139 DUF2910: Protein of u 73.4 57 0.0012 27.7 12.2 39 186-224 159-210 (214)
95 KOG1583 UDP-N-acetylglucosamin 71.3 42 0.00092 30.2 9.3 133 90-224 163-313 (330)
96 KOG1583 UDP-N-acetylglucosamin 67.8 20 0.00043 32.2 6.6 62 163-224 74-136 (330)
97 TIGR00803 nst UDP-galactose tr 66.3 25 0.00055 29.9 7.0 42 181-222 6-47 (222)
98 PF07857 DUF1632: CEO family ( 65.9 42 0.00091 29.7 8.3 43 89-131 181-230 (254)
99 COG3169 Uncharacterized protei 62.7 64 0.0014 24.3 12.7 53 173-225 62-115 (116)
100 KOG3912 Predicted integral mem 60.7 1.3E+02 0.0029 27.3 11.2 136 88-223 173-332 (372)
101 PF05653 Mg_trans_NIPA: Magnes 60.4 33 0.00072 31.0 6.9 60 167-226 227-293 (300)
102 COG3086 RseC Positive regulato 58.7 23 0.00049 28.6 4.8 45 174-219 69-113 (150)
103 COG4657 RnfA Predicted NADH:ub 58.6 1E+02 0.0023 25.4 10.5 66 191-256 83-155 (193)
104 PF03729 DUF308: Short repeat 57.9 30 0.00066 23.3 5.0 20 211-230 2-21 (72)
105 KOG4314 Predicted carbohydrate 56.5 82 0.0018 27.0 8.0 140 88-228 132-279 (290)
106 COG1030 NfeD Membrane-bound se 54.5 2E+02 0.0043 27.6 11.0 68 158-227 259-326 (436)
107 TIGR00997 ispZ intracellular s 53.2 1.3E+02 0.0029 25.0 10.7 59 168-227 11-71 (178)
108 PF04279 IspA: Intracellular s 52.6 1.3E+02 0.0029 24.9 12.8 62 165-227 8-71 (176)
109 KOG4455 Uncharacterized conser 51.7 75 0.0016 24.2 6.3 26 151-176 83-108 (110)
110 PF04246 RseC_MucC: Positive r 49.1 31 0.00068 27.0 4.3 25 175-199 63-87 (135)
111 PRK10862 SoxR reducing system 48.5 31 0.00067 28.0 4.3 27 174-200 69-95 (154)
112 KOG1582 UDP-galactose transpor 44.0 82 0.0018 28.4 6.3 81 193-273 146-232 (367)
113 PRK10209 acid-resistance membr 42.6 2E+02 0.0043 24.0 12.7 19 211-229 85-103 (190)
114 PF11023 DUF2614: Protein of u 41.6 72 0.0016 24.5 4.9 25 202-226 5-29 (114)
115 PF07698 7TM-7TMR_HD: 7TM rece 40.7 2.1E+02 0.0045 23.6 13.6 25 181-205 59-84 (194)
116 PF05297 Herpes_LMP1: Herpesvi 40.5 9.2 0.0002 34.3 0.0 66 156-221 25-93 (381)
117 PF07168 Ureide_permease: Urei 39.8 2.8 6.1E-05 37.9 -3.4 123 96-220 1-141 (336)
118 COG2323 Predicted membrane pro 38.1 2.3E+02 0.005 24.6 8.2 79 121-202 4-82 (224)
119 PF09656 PGPGW: Putative trans 37.7 1E+02 0.0022 20.4 4.6 21 208-228 4-24 (53)
120 TIGR02206 intg_mem_TP0381 cons 35.2 2.9E+02 0.0063 23.7 14.0 102 164-266 49-156 (222)
121 PRK00259 intracellular septati 33.3 2.9E+02 0.0062 23.1 11.3 59 168-227 11-71 (179)
122 PF02554 CstA: Carbon starvati 32.8 4.2E+02 0.0092 24.9 13.6 95 182-276 161-258 (376)
123 PRK11715 inner membrane protei 30.8 4.9E+02 0.011 25.0 14.7 97 156-255 334-432 (436)
124 PRK10213 nepI ribonucleoside t 29.9 4.4E+02 0.0095 24.2 13.3 48 177-224 52-101 (394)
125 PF06123 CreD: Inner membrane 28.7 5.3E+02 0.012 24.7 15.4 29 196-224 369-397 (430)
126 TIGR02230 ATPase_gene1 F0F1-AT 26.1 1.2E+02 0.0027 22.8 4.0 35 188-222 53-87 (100)
127 PF11177 DUF2964: Protein of u 25.7 2.3E+02 0.0049 19.4 5.8 45 183-227 14-58 (62)
128 PRK11128 putative 3-phenylprop 25.4 5.1E+02 0.011 23.4 19.8 46 177-222 237-284 (382)
129 PRK10666 ammonium transporter; 25.4 6.1E+02 0.013 24.3 14.3 25 151-175 218-242 (428)
130 PF09529 Intg_mem_TP0381: Inte 22.8 4.7E+02 0.01 22.1 14.6 94 162-256 50-149 (225)
131 COG2917 Intracellular septatio 22.5 4.6E+02 0.01 21.9 9.7 61 165-226 8-70 (180)
132 TIGR00902 2A0127 phenyl propri 22.5 5.8E+02 0.013 23.1 20.1 48 177-224 237-286 (382)
133 PRK02935 hypothetical protein; 21.8 2.1E+02 0.0045 21.8 4.4 25 202-226 6-30 (110)
134 PRK00972 tetrahydromethanopter 21.6 2.2E+02 0.0048 25.3 5.2 39 91-137 65-103 (292)
135 COG3247 HdeD Uncharacterized c 21.5 4.9E+02 0.011 21.9 12.3 22 206-227 75-97 (185)
136 PF09586 YfhO: Bacterial membr 21.3 9.1E+02 0.02 24.9 15.5 137 121-278 93-229 (843)
137 PF07123 PsbW: Photosystem II 21.0 99 0.0022 24.6 2.7 28 87-114 102-129 (138)
138 PF07168 Ureide_permease: Urei 20.8 84 0.0018 28.7 2.5 91 86-176 214-326 (336)
139 KOG3817 Uncharacterized conser 20.0 6.4E+02 0.014 23.7 8.0 80 103-187 201-285 (452)
No 1
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.88 E-value=8.6e-21 Score=167.60 Aligned_cols=163 Identities=12% Similarity=0.119 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCC-----C---CCCcchHHHHHHHHHH
Q 023719 91 SGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQP-----I---FGPMHARNLLVLRALV 162 (278)
Q Consensus 91 ~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~-----~---~~~~~~~~~~~l~g~~ 162 (278)
+|++++++++++||.++++.|.+ .+++|.++.++|++++.+++.++...++++ . ..+++++..+.++|++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~--~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL--KPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 48999999999999999999984 579999999999999998877655332211 1 1122224456778888
Q ss_pred HHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccccccchhhHHHHHH
Q 023719 163 GFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQGREVSLQKLFY 242 (278)
Q Consensus 163 ~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~g~l~a 242 (278)
....+.++++|++++++++++++.++.|+++++++++++|||+++++|++++++++|++++..++.+ ....+++++
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~----~~~~~l~aa 155 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGS----LPWEALVLA 155 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCC----chHHHHHHH
Confidence 8889999999999999999999999999999999999999999999999999999999988764321 124567778
Q ss_pred HHHHHHHHHhhhhhccC
Q 023719 243 YAKNGFHAYVNSQVFSG 259 (278)
Q Consensus 243 l~~A~~~i~~r~~~~~~ 259 (278)
++|++|.+..|+..+++
T Consensus 156 ~~~a~~~i~~~~~~~~~ 172 (256)
T TIGR00688 156 FSFTAYGLIRKALKNTD 172 (256)
T ss_pred HHHHHHHHHHhhcCCCC
Confidence 88999999999986543
No 2
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.87 E-value=1.6e-20 Score=169.58 Aligned_cols=180 Identities=11% Similarity=0.102 Sum_probs=139.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCC-C----CCCcchHHHHHHHHHH
Q 023719 88 SRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQP-I----FGPMHARNLLVLRALV 162 (278)
Q Consensus 88 ~~~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~-~----~~~~~~~~~~~l~g~~ 162 (278)
++.+|++++++++++||.++++.|.. .+++|.++.++|++++.+++.++...+++. . ..+++.+...+.+++.
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~--~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI--YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVL 82 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHH
Confidence 44689999999999999999999985 579999999999999988776655433221 1 1122333344566666
Q ss_pred HHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccccccchhhHHHHHH
Q 023719 163 GFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQGREVSLQKLFY 242 (278)
Q Consensus 163 ~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~g~l~a 242 (278)
.+..+.++++|++++|+++++++.++.|+++++++++++|||+++++|+|++++++|++++..++.. ....+++.+
T Consensus 83 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~----~~~~~l~aa 158 (296)
T PRK15430 83 IGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGS----LPIIALGLA 158 (296)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCC----ccHHHHHHH
Confidence 7778999999999999999999999999999999999999999999999999999999998865321 224677778
Q ss_pred HHHHHHHHHhhhhhccCCc--hhHHHHHHHHHH
Q 023719 243 YAKNGFHAYVNSQVFSGET--RFICAYVAIDTS 273 (278)
Q Consensus 243 l~~A~~~i~~r~~~~~~~~--~~i~~y~~l~~~ 273 (278)
++||.|.++.|+...+... .....|...++.
T Consensus 159 ~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~ 191 (296)
T PRK15430 159 FSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAA 191 (296)
T ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHH
Confidence 8899999999997543322 233344444443
No 3
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.83 E-value=7.7e-19 Score=158.49 Aligned_cols=170 Identities=12% Similarity=0.042 Sum_probs=132.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHH
Q 023719 90 YSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFS 169 (278)
Q Consensus 90 ~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 169 (278)
.++++++++++++||.+++..|... ++++|+.+.++|+.++.++++++..++ . .++++++..+.+++.......+
T Consensus 3 ~~~~l~~l~a~~~Wg~~~~~~k~~~-~~~~P~~~~~~R~~~a~l~l~~~~~~~---~-~~~~~~~~~~~~~l~~~~~~~~ 77 (295)
T PRK11689 3 QKATLIGLIAILLWSTMVGLIRGVS-ESLGPVGGAAMIYSVSGLLLLLTVGFP---R-LRQFPKRYLLAGGLLFVSYEIC 77 (295)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHH-ccCChHHHHHHHHHHHHHHHHHHcccc---c-cccccHHHHHHHhHHHHHHHHH
Confidence 4588899999999999999999976 899999999999999998887654211 1 1223344555555554455566
Q ss_pred HHHHhh----cCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccccc-----------cch
Q 023719 170 FVYSIQ----RLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQ-----------GRE 234 (278)
Q Consensus 170 ~~~al~----~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~-----------~~~ 234 (278)
++.+++ ..++++++++.++.|+++.+++++++|||+++++++|++++++|++++..++.... ..+
T Consensus 78 ~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G 157 (295)
T PRK11689 78 LALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLS 157 (295)
T ss_pred HHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHH
Confidence 776765 46888999999999999999999999999999999999999999999987643110 012
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhccCCchhH
Q 023719 235 VSLQKLFYYAKNGFHAYVNSQVFSGETRFI 264 (278)
Q Consensus 235 ~~~g~l~al~~A~~~i~~r~~~~~~~~~~i 264 (278)
..+.++++++||.|.++.||..++.++...
T Consensus 158 ~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~ 187 (295)
T PRK11689 158 YGLAFIGAFIWAAYCNVTRKYARGKNGITL 187 (295)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCchhH
Confidence 345556677799999999999877766544
No 4
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.83 E-value=1.5e-18 Score=156.41 Aligned_cols=179 Identities=13% Similarity=0.047 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHH-HHHHHHH
Q 023719 92 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVG-FLSLFSF 170 (278)
Q Consensus 92 g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~-~~~~~~~ 170 (278)
-.++.++..++||.+.++.|... ++++|.+++++|+.++.++++++...++++. .++++++.....|.++ ...+.++
T Consensus 9 ~~~~~~~~~~iWg~~~~~~K~~~-~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~ 86 (292)
T PRK11272 9 LFGALFALYIIWGSTYLVIRIGV-ESWPPLMMAGVRFLIAGILLLAFLLLRGHPL-PTLRQWLNAALIGLLLLAVGNGMV 86 (292)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888999999999999976 7999999999999999998888776554432 3455566666666655 4567788
Q ss_pred HHHh-hcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccccc-cchhhHHHHHHHHHHHH
Q 023719 171 VYSI-QRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQ-GREVSLQKLFYYAKNGF 248 (278)
Q Consensus 171 ~~al-~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~-~~~~~~g~l~al~~A~~ 248 (278)
+++. +++++++++++.++.|+++.+++++ +|||+++++++|++++++|+.++..++.... ..+..++++.+++||.+
T Consensus 87 ~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~a~~ 165 (292)
T PRK11272 87 TVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASWAFG 165 (292)
T ss_pred HHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHHHHH
Confidence 8898 9999999999999999999999985 7999999999999999999998865432111 12455667777889999
Q ss_pred HHHhhhhhccCCchhHHHHHHHHHHH
Q 023719 249 HAYVNSQVFSGETRFICAYVAIDTSK 274 (278)
Q Consensus 249 ~i~~r~~~~~~~~~~i~~y~~l~~~l 274 (278)
.+..||..+++ +....+|...++++
T Consensus 166 ~~~~~~~~~~~-~~~~~~~~~~~~~~ 190 (292)
T PRK11272 166 SVWSSRLPLPV-GMMAGAAEMLAAGV 190 (292)
T ss_pred HHHHHhcCCCc-chHHHHHHHHHHHH
Confidence 99999986543 45566676665554
No 5
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.83 E-value=1.1e-18 Score=161.29 Aligned_cols=186 Identities=12% Similarity=0.042 Sum_probs=145.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCC-C--CCCCcchHHHHHHHHHHHHH
Q 023719 89 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQ-P--IFGPMHARNLLVLRALVGFL 165 (278)
Q Consensus 89 ~~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~-~--~~~~~~~~~~~~l~g~~~~~ 165 (278)
+.+.++.|++.-++++...++.|.+...+++|+.+.++|+.++.++++++.+.+++ + ....++++..+.+.|++++.
T Consensus 11 ~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~ 90 (358)
T PLN00411 11 EAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSM 90 (358)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999998899999999999999999998887654322 2 11224455667777777765
Q ss_pred HHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHH------hcCCCcHHHHHHHHHHHHHhHHhhccccc----------
Q 023719 166 SLFSFVYSIQRLPLSQATVLSFTAPIMASIAARII------LREKLKIAEIGGLALSFFGVLFIFRRILT---------- 229 (278)
Q Consensus 166 ~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~------l~Er~~~~~~~gi~l~~~Gv~li~~~~~~---------- 229 (278)
.+.+++++++++++++++++.++.|+++.++++++ +|||+++++++|++++++|+.++...+..
T Consensus 91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~ 170 (358)
T PLN00411 91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPY 170 (358)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccc
Confidence 66689999999999999999999999999999999 69999999999999999999988743211
Q ss_pred -----------cccchhhHH----HHHHHHHHHHHHHhhhhhccCCch-hHHHHHHHHHHH
Q 023719 230 -----------TQGREVSLQ----KLFYYAKNGFHAYVNSQVFSGETR-FICAYVAIDTSK 274 (278)
Q Consensus 230 -----------~~~~~~~~g----~l~al~~A~~~i~~r~~~~~~~~~-~i~~y~~l~~~l 274 (278)
..+....+| ++.+++||+|.++.|+..+++++. ..++|.++++++
T Consensus 171 ~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~ 231 (358)
T PLN00411 171 LNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSI 231 (358)
T ss_pred ccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHH
Confidence 001111223 344566999999999998877554 556676655544
No 6
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.81 E-value=7.3e-18 Score=152.38 Aligned_cols=173 Identities=15% Similarity=0.165 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHH-HHHHHH
Q 023719 92 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGF-LSLFSF 170 (278)
Q Consensus 92 g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~-~~~~~~ 170 (278)
..++.++++++||.+.++.|... ++++|.++.++|+.+++++++++..+++ ..++..+..|+... ..+.++
T Consensus 5 ~~l~~l~~~~~Wg~~~~~~k~~~-~~~~p~~~~~~R~~~a~~~l~~~~~~~~-------~~~~~~~~~g~~~~~~~~~~~ 76 (299)
T PRK11453 5 DGVLALLVVVVWGLNFVVIKVGL-HNMPPLMLAGLRFMLVAFPAIFFVARPK-------VPLNLLLGYGLTISFGQFAFL 76 (299)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHHhcCCC-------CchHHHHHHHHHHHHHHHHHH
Confidence 34668899999999999999976 7899999999999998776655443221 12333444455444 344567
Q ss_pred HHHhhc-CchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhcccccccc---chhhHHHHHHHHHH
Q 023719 171 VYSIQR-LPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQG---REVSLQKLFYYAKN 246 (278)
Q Consensus 171 ~~al~~-~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~~---~~~~~g~l~al~~A 246 (278)
|.++++ .++++++++.++.|+++.+++++++|||+++++++|++++++|+.++..++..... .++.+.++++++|+
T Consensus 77 ~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~aal~~a 156 (299)
T PRK11453 77 FCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAFSWA 156 (299)
T ss_pred HHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHHHHHHH
Confidence 889988 68999999999999999999999999999999999999999999999865322211 13345566677799
Q ss_pred HHHHHhhhhhccCCch---hHHHHHHHHH
Q 023719 247 GFHAYVNSQVFSGETR---FICAYVAIDT 272 (278)
Q Consensus 247 ~~~i~~r~~~~~~~~~---~i~~y~~l~~ 272 (278)
++.++.|+..++.+.. ...+|.++.+
T Consensus 157 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (299)
T PRK11453 157 CGNIFNKKIMSHSTRPAVMSLVVWSALIP 185 (299)
T ss_pred HHHHHHHHHhcccCccchhHHHHHHHHHH
Confidence 9999999986654432 3345544443
No 7
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.80 E-value=6.5e-18 Score=148.95 Aligned_cols=168 Identities=17% Similarity=0.176 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCchHHH
Q 023719 103 YFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQA 182 (278)
Q Consensus 103 ~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~al~~~~~~~a 182 (278)
||.+++..|....+..|+.++.+.|++.+.+++.++.+++ ..+++.++.+..+++...+.+.++++|+++++++++
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~ 76 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEA 76 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence 7889999999865678999999999999988887765544 122333444455555566788899999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccccc-cchhhHHHHHHHHHHHHHHHhhhhhccCCc
Q 023719 183 TVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQ-GREVSLQKLFYYAKNGFHAYVNSQVFSGET 261 (278)
Q Consensus 183 ~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~-~~~~~~g~l~al~~A~~~i~~r~~~~~~~~ 261 (278)
+++.++.|+++++++++++|||+++++++|++++++|+.++..++.... ..+..++++.+++|+.+.++.|+..++.++
T Consensus 77 ~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~ 156 (260)
T TIGR00950 77 ALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLVKKEGP 156 (260)
T ss_pred HHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCc
Confidence 9999999999999999999999999999999999999999876542221 123445666777799999999999877665
Q ss_pred hhHHH--HHHHHHHH
Q 023719 262 RFICA--YVAIDTSK 274 (278)
Q Consensus 262 ~~i~~--y~~l~~~l 274 (278)
..+.+ |.+.++++
T Consensus 157 ~~~~~~~~~~~~~~~ 171 (260)
T TIGR00950 157 ELLQFTGWVLLLGAL 171 (260)
T ss_pred hHHHHHHHHHHHHHH
Confidence 44333 44555544
No 8
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.77 E-value=5.4e-17 Score=146.33 Aligned_cols=175 Identities=11% Similarity=0.030 Sum_probs=136.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHH
Q 023719 89 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLF 168 (278)
Q Consensus 89 ~~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 168 (278)
+.+|+.++++++++|+.++.+.|++. ++++|.++.++|++++.++++++.++++++ .++++++..+..|++....+.
T Consensus 10 ~~~~~~~~~la~~~~~~~~~~~K~~~-~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~ 86 (293)
T PRK10532 10 VWLPILLLLIAMASIQSGASLAKSLF-PLVGAPGVTALRLALGTLILIAIFKPWRLR--FAKEQRLPLLFYGVSLGGMNY 86 (293)
T ss_pred cchHHHHHHHHHHHHHhhHHHHHHHH-HHcCHHHHHHHHHHHHHHHHHHHHhHHhcc--CCHHHHHHHHHHHHHHHHHHH
Confidence 36799999999999999999999987 679999999999999998888766543322 234566677788888788888
Q ss_pred HHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhcccccccc-c--hhhHHHHHHHHH
Q 023719 169 SFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQG-R--EVSLQKLFYYAK 245 (278)
Q Consensus 169 ~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~~-~--~~~~g~l~al~~ 245 (278)
+++++++++|++.++++.++.|+++.+++ +||+.+ +.++.++++|+.++..++.+..+ . +..++++.+++|
T Consensus 87 ~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~--~~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~~ 160 (293)
T PRK10532 87 LFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVD--FVWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGACW 160 (293)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHH--HHHHHHHHHHHheeeecCCCcccCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999887 366554 45677889999988755432211 1 344566667779
Q ss_pred HHHHHHhhhhhccCCchhHHHHHHHHHH
Q 023719 246 NGFHAYVNSQVFSGETRFICAYVAIDTS 273 (278)
Q Consensus 246 A~~~i~~r~~~~~~~~~~i~~y~~l~~~ 273 (278)
|+|.+..|+..++.++..+ .|..++++
T Consensus 161 a~~~v~~r~~~~~~~~~~~-~~~~~~~~ 187 (293)
T PRK10532 161 AIYILSGQRAGAEHGPATV-AIGSLIAA 187 (293)
T ss_pred HHHHHHHHHHhccCCchHH-HHHHHHHH
Confidence 9999999999877777665 45555544
No 9
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.74 E-value=3.2e-16 Score=140.43 Aligned_cols=165 Identities=12% Similarity=0.088 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHh--CCC-CCCCcchHHHHHHHHHHHHHHHHH
Q 023719 93 LMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRS--GQP-IFGPMHARNLLVLRALVGFLSLFS 169 (278)
Q Consensus 93 ~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~--~~~-~~~~~~~~~~~~l~g~~~~~~~~~ 169 (278)
.++.++++++|+..++..|... ++.++. .++++....+++.++...+ ++. ...+++++...+.+++.....+.+
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~-~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHA-DKEPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLG 79 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC-CchhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999754 443443 4777777777776665543 211 222345566677788888888999
Q ss_pred HHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccccc-cchhhHHHHHHHHHHHH
Q 023719 170 FVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQ-GREVSLQKLFYYAKNGF 248 (278)
Q Consensus 170 ~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~-~~~~~~g~l~al~~A~~ 248 (278)
+++|+++.++++++.+.++.|+++++++++++|||+++++|+|++++++|++++..++.... ..+..++++.+++|++|
T Consensus 80 ~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~~a~~ 159 (281)
T TIGR03340 80 LAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGTAIY 159 (281)
T ss_pred HHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999876543221 11334567777889999
Q ss_pred HHHhhhhhccCC
Q 023719 249 HAYVNSQVFSGE 260 (278)
Q Consensus 249 ~i~~r~~~~~~~ 260 (278)
.++.|+..++.+
T Consensus 160 ~i~~k~~~~~~~ 171 (281)
T TIGR03340 160 SLSDKAAALGVP 171 (281)
T ss_pred hhhccccccchh
Confidence 999888754433
No 10
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.73 E-value=1e-15 Score=138.44 Aligned_cols=167 Identities=11% Similarity=0.046 Sum_probs=132.5
Q ss_pred HHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHHHHHH-hCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHH
Q 023719 107 QVISDVFMVQS-IPLFETVFMRCTVTLILSYLWLRR-SGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATV 184 (278)
Q Consensus 107 ~v~~k~~~~~~-~~p~~~~~~R~~~a~l~l~~~~~~-~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~al~~~~~~~a~~ 184 (278)
.+..|++. ++ ..|..+.++|+.++.+++.+.... .+++...++++++.++..|++....+.+.++++++++++++++
T Consensus 18 ~~~NK~~l-~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~l 96 (302)
T TIGR00817 18 NIYNKKLL-NVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHT 96 (302)
T ss_pred HHHHHHHH-hhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 35678877 55 679999999999988776555221 1222223466788888899998888889999999999999999
Q ss_pred HHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccccccchhhHHHHHHHHHHHHHHHhhhhhc--cCCch
Q 023719 185 LSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQGREVSLQKLFYYAKNGFHAYVNSQVF--SGETR 262 (278)
Q Consensus 185 l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~g~l~al~~A~~~i~~r~~~~--~~~~~ 262 (278)
+.++.|+++++++++++|||+++++++|++++++|+.+....+......+..++.+.+++|+++.++.||..+ +.++.
T Consensus 97 i~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~ 176 (302)
T TIGR00817 97 IKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKT 176 (302)
T ss_pred HHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcc
Confidence 9999999999999999999999999999999999998765333221111344556667779999999999887 77889
Q ss_pred hHHHHHHHHHHH
Q 023719 263 FICAYVAIDTSK 274 (278)
Q Consensus 263 ~i~~y~~l~~~l 274 (278)
.+++|.++.+++
T Consensus 177 ~~~~~~~~~~~~ 188 (302)
T TIGR00817 177 NLYAYISIMSLF 188 (302)
T ss_pred cHHHHHHHHHHH
Confidence 999999877765
No 11
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.72 E-value=4.9e-17 Score=125.57 Aligned_cols=132 Identities=19% Similarity=0.253 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC---CcchHHHHHHHHHHHHHHHH
Q 023719 92 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFG---PMHARNLLVLRALVGFLSLF 168 (278)
Q Consensus 92 g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~---~~~~~~~~~l~g~~~~~~~~ 168 (278)
..+++++++++|++..++.|... +++||..-.++|.++...++..+....++.... .++.|..+.+.|+.+..++.
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl-~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl 82 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGL-EGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWL 82 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-cccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHH
Confidence 56899999999999999999986 999999999999999998888887776654333 56778899999999999999
Q ss_pred HHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhh
Q 023719 169 SFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 224 (278)
Q Consensus 169 ~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~ 224 (278)
+||+|++...++.+..+-.++|+++++++++|+|||++..+|+|++++.+|++++.
T Consensus 83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 99999999999999999999999999999999999999999999999999998864
No 12
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.72 E-value=3.2e-15 Score=138.06 Aligned_cols=184 Identities=11% Similarity=0.067 Sum_probs=136.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-HHHHHHHHHHHHHHHHHHHHHHhC--CCCCC-CcchHHHHHHHHHHHHH
Q 023719 90 YSGLMCMALSSTIYFFMQVISDVFMVQSIP-LFETVFMRCTVTLILSYLWLRRSG--QPIFG-PMHARNLLVLRALVGFL 165 (278)
Q Consensus 90 ~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~-p~~~~~~R~~~a~l~l~~~~~~~~--~~~~~-~~~~~~~~~l~g~~~~~ 165 (278)
.+..++.+.--.+-....+..|.+. +.++ |+.+..+|++++.+++..+..... .++.. .+++++.++..|+++..
T Consensus 48 ~~~~~~~~~wy~~s~~~~~~nK~vl-~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~ 126 (350)
T PTZ00343 48 WKLALLFLTWYALNVLYVVDNKLAL-NMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLF 126 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4444555554455555677788886 7799 999999999999876554433211 12222 23467788888998888
Q ss_pred HHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccccccchhhHHHHHHHHH
Q 023719 166 SLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQGREVSLQKLFYYAK 245 (278)
Q Consensus 166 ~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~g~l~al~~ 245 (278)
.+...+.|+++++++.+.++.+++|+++++++++++|||++++++++++++++|+.+....+......+...+.+.++++
T Consensus 127 ~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~~~~ 206 (350)
T PTZ00343 127 VHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNLGS 206 (350)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHHH
Confidence 77777899999999999999999999999999999999999999999999999999987544332222344556666679
Q ss_pred HHHHHHhhhhhccCC-------chhHHHHHHHHHHH
Q 023719 246 NGFHAYVNSQVFSGE-------TRFICAYVAIDTSK 274 (278)
Q Consensus 246 A~~~i~~r~~~~~~~-------~~~i~~y~~l~~~l 274 (278)
+++.++.|+..++.+ +..+..|.++++++
T Consensus 207 a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l 242 (350)
T PTZ00343 207 SLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASL 242 (350)
T ss_pred HHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHH
Confidence 999999999876532 44455555666654
No 13
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.66 E-value=3e-14 Score=126.49 Aligned_cols=177 Identities=16% Similarity=0.099 Sum_probs=139.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCcchHHHHHHHHHHHHHHH
Q 023719 89 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQ-PIFGPMHARNLLVLRALVGFLSL 167 (278)
Q Consensus 89 ~~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~ 167 (278)
...+..+.++.++.|+......|.......++....+.|+..+.++..+...+++. .....++.++..+.+++.....+
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (292)
T COG0697 5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPF 84 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHH
Confidence 35688888999999999999999986233777778888999988884444443321 22222223456677777778888
Q ss_pred HHHHHHhhcCchHHHHHHHhhHHHHHHHHHH-HHhcCCCcHHHHHHHHHHHHHhHHhhcccccccc---chhhHHHHHHH
Q 023719 168 FSFVYSIQRLPLSQATVLSFTAPIMASIAAR-IILREKLKIAEIGGLALSFFGVLFIFRRILTTQG---REVSLQKLFYY 243 (278)
Q Consensus 168 ~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~-l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~~---~~~~~g~l~al 243 (278)
.+++.++++++++.++.+.++.|+++.++++ +++|||++++++.++.++++|++++..++..... .+...+++.++
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~ 164 (292)
T COG0697 85 LLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAAL 164 (292)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999997 6679999999999999999999999988765432 34556677777
Q ss_pred HHHHHHHHhhhhhccCCchhHHH
Q 023719 244 AKNGFHAYVNSQVFSGETRFICA 266 (278)
Q Consensus 244 ~~A~~~i~~r~~~~~~~~~~i~~ 266 (278)
.+|++.+..|+.. +.++.....
T Consensus 165 ~~a~~~~~~~~~~-~~~~~~~~~ 186 (292)
T COG0697 165 LWALYTALVKRLS-RLGPVTLAL 186 (292)
T ss_pred HHHHHHHHHHHhc-CCChHHHHH
Confidence 7999999999987 566666665
No 14
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.66 E-value=1.2e-17 Score=143.88 Aligned_cols=184 Identities=21% Similarity=0.293 Sum_probs=145.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHH
Q 023719 89 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLF 168 (278)
Q Consensus 89 ~~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 168 (278)
..+|+++..++ .++.+..+..+.. .+.+|.++.-.|+++-.++.++.....++..+.++..+++++++|+.++.+..
T Consensus 36 p~~gl~l~~vs-~ff~~~~vv~t~~--~e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tgvm 112 (346)
T KOG4510|consen 36 PNLGLLLLTVS-YFFNSCMVVSTKV--LENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTGVM 112 (346)
T ss_pred CccCceehhhH-HHHhhHHHhhhhh--hccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhHHH
Confidence 45688888888 5565555555554 47899999999987777776665554554544555556778999999999999
Q ss_pred HHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccccc----cc------hhhHH
Q 023719 169 SFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQ----GR------EVSLQ 238 (278)
Q Consensus 169 ~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~----~~------~~~~g 238 (278)
+.|||+++++.++|+++.+..|+|+.+++|.++|||.++.+.++..+.+.||+++++|..... +. .+..|
T Consensus 113 lmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~g 192 (346)
T KOG4510|consen 113 LMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPG 192 (346)
T ss_pred HHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCc
Confidence 999999999999999999999999999999999999999999999999999999999864321 10 11223
Q ss_pred ----HHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHh
Q 023719 239 ----KLFYYAKNGFHAYVNSQVFSGETRFICAYVAIDTSKI 275 (278)
Q Consensus 239 ----~l~al~~A~~~i~~r~~~~~~~~~~i~~y~~l~~~li 275 (278)
+...+..|.-+|+.|++.++.+....+-|+.+++.+.
T Consensus 193 t~aai~s~lf~asvyIilR~iGk~~h~~msvsyf~~i~lV~ 233 (346)
T KOG4510|consen 193 TVAAISSVLFGASVYIILRYIGKNAHAIMSVSYFSLITLVV 233 (346)
T ss_pred hHHHHHhHhhhhhHHHHHHHhhccccEEEEehHHHHHHHHH
Confidence 3333346678889999999988888888888887763
No 15
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.60 E-value=1.1e-14 Score=113.42 Aligned_cols=122 Identities=20% Similarity=0.304 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhC--CCCCCCcchHHHHHHHHHH-HHHHHHHHHHHhhcC
Q 023719 101 TIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSG--QPIFGPMHARNLLVLRALV-GFLSLFSFVYSIQRL 177 (278)
Q Consensus 101 ~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~--~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~al~~~ 177 (278)
++||.+.++.|... ++.||.+..++|+..+.+ ++++....+ +....+.+.+...+..+++ ..+++.+++++++++
T Consensus 1 ~~~a~~~~~~k~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 78 (126)
T PF00892_consen 1 FSWAIYSVFSKKLL-KKISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI 78 (126)
T ss_pred ceeeeHHHHHHHHh-ccCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence 46999999999987 779999999999999997 444333222 2122333445555555555 688999999999999
Q ss_pred chHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhh
Q 023719 178 PLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 224 (278)
Q Consensus 178 ~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~ 224 (278)
+++.++.+.+++|+++.+++++++||++++++++|++++++|++++.
T Consensus 79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 79 SASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999875
No 16
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.58 E-value=1.3e-13 Score=120.91 Aligned_cols=161 Identities=16% Similarity=0.185 Sum_probs=131.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCCCcchHHHHHHHHHHH
Q 023719 89 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQP-----IFGPMHARNLLVLRALVG 163 (278)
Q Consensus 89 ~~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~-----~~~~~~~~~~~~l~g~~~ 163 (278)
..+|+++.+.+.+.||......|.+ +++++.|+...|.+.+++++..+....++. ..++++.+..+.+.++..
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll--~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li 82 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLL--EPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLI 82 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHH--ccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3579999999999999999999996 799999999999999988776654422221 123344455667777888
Q ss_pred HHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccccccchhhHHHHHHH
Q 023719 164 FLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQGREVSLQKLFYY 243 (278)
Q Consensus 164 ~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~g~l~al 243 (278)
...+..|.+|.++-.+-+++.-.+++|++.++++++|+|||+++.||++++++.+||.....-. ++..+..+..++
T Consensus 83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~----g~lpwval~la~ 158 (293)
T COG2962 83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL----GSLPWVALALAL 158 (293)
T ss_pred HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc----CCCcHHHHHHHH
Confidence 8888999999999999999999999999999999999999999999999999999998876432 223456667778
Q ss_pred HHHHHHHHhhhh
Q 023719 244 AKNGFHAYVNSQ 255 (278)
Q Consensus 244 ~~A~~~i~~r~~ 255 (278)
.|+.|..+-|+.
T Consensus 159 sf~~Ygl~RK~~ 170 (293)
T COG2962 159 SFGLYGLLRKKL 170 (293)
T ss_pred HHHHHHHHHHhc
Confidence 888888775554
No 17
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.54 E-value=6e-13 Score=119.93 Aligned_cols=173 Identities=12% Similarity=0.037 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 023719 92 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFV 171 (278)
Q Consensus 92 g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 171 (278)
+++++++++++||...+..|... +.++.++. |..++.+++..+....+++....++.+...++.|++-.+++.+++
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~~~~ 77 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQINQF 77 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhhhHH
Confidence 67899999999999999999963 78887775 777777766654433322222234555667777888888999999
Q ss_pred HHhhcCchHHHHHHHh-hHHHHHHHHHHHHhcCCCcHHH----HHHHHHHHHHhHHhhccccccc--------cchhhHH
Q 023719 172 YSIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIAE----IGGLALSFFGVLFIFRRILTTQ--------GREVSLQ 238 (278)
Q Consensus 172 ~al~~~~~~~a~~l~~-~~Pl~~~lla~l~l~Er~~~~~----~~gi~l~~~Gv~li~~~~~~~~--------~~~~~~g 238 (278)
.++++++++.+..+.+ +.++++.+++.+++|||.++++ ++|++++++|++++...+.... ..+...|
T Consensus 78 ~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~~~ 157 (290)
T TIGR00776 78 KSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGILLL 157 (290)
T ss_pred HHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHHHH
Confidence 9999999999999988 8999999999999999999999 9999999999998865432211 1234456
Q ss_pred HHHHHHHHHHHHHhhhhhccCCchhHHHHHHH
Q 023719 239 KLFYYAKNGFHAYVNSQVFSGETRFICAYVAI 270 (278)
Q Consensus 239 ~l~al~~A~~~i~~r~~~~~~~~~~i~~y~~l 270 (278)
++.+++|+.|.+..|.. ..++...++++..
T Consensus 158 l~sg~~y~~~~~~~~~~--~~~~~~~~~~~~~ 187 (290)
T TIGR00776 158 LMSTIGYLVYVVVAKAF--GVDGLSVLLPQAI 187 (290)
T ss_pred HHHHHHHHHHHHHHHHc--CCCcceehhHHHH
Confidence 66777799999999987 3778877555544
No 18
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.51 E-value=1.1e-12 Score=115.62 Aligned_cols=133 Identities=18% Similarity=0.143 Sum_probs=108.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCH--HHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHH-HHH
Q 023719 88 SRYSGLMCMALSSTIYFFMQVISDVFMVQSIPL--FETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRAL-VGF 164 (278)
Q Consensus 88 ~~~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p--~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~-~~~ 164 (278)
...+|.+++++++++|+.+.+..|... ++.++ .....+++.++.+++.++....++......+.+..++..++ ...
T Consensus 125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (260)
T TIGR00950 125 INPAGLLLGLGSGISFALGTVLYKRLV-KKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTA 203 (260)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHh-hcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHH
Confidence 346799999999999999999999976 56664 45555788998888887766544333223344444454444 456
Q ss_pred HHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhH
Q 023719 165 LSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVL 221 (278)
Q Consensus 165 ~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~ 221 (278)
+++.+|++++++.+++.++.+.+++|+++++++++++||+++..+++|..++++|+.
T Consensus 204 ~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 204 LAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999999999999999999999973
No 19
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.44 E-value=1.2e-11 Score=112.78 Aligned_cols=188 Identities=16% Similarity=0.124 Sum_probs=138.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCCcchHHHHHHHHHHHH
Q 023719 89 RYSGLMCMALSSTIYFFMQVISDVFMVQ--SIPLFETVFMRCTVTLILSYLWLRRSGQP--IFGPMHARNLLVLRALVGF 164 (278)
Q Consensus 89 ~~~g~l~~l~aa~~~~~~~v~~k~~~~~--~~~p~~~~~~R~~~a~l~l~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~ 164 (278)
..+++++.=+-+++-...+.....+... +.|.++..+...+...+.......+++.. ....++.|+..++.+++-.
T Consensus 11 ~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv 90 (334)
T PF06027_consen 11 FWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDV 90 (334)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHH
Confidence 3567777777788888888888776543 34556665555554443332333333321 1112233444555689999
Q ss_pred HHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhcccccc-----ccchhhHHH
Q 023719 165 LSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTT-----QGREVSLQK 239 (278)
Q Consensus 165 ~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~-----~~~~~~~g~ 239 (278)
.+.++...|+++++.+.+.++..+.-+++.+++++++|||.++.+++|++++++|+.++...+... .+.....|+
T Consensus 91 ~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GD 170 (334)
T PF06027_consen 91 EANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGD 170 (334)
T ss_pred HHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhH
Confidence 999999999999999999999999999999999999999999999999999999999987665322 122334454
Q ss_pred HH----HHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHhc
Q 023719 240 LF----YYAKNGFHAYVNSQVFSGETRFICAYVAIDTSKIG 276 (278)
Q Consensus 240 l~----al~~A~~~i~~r~~~~~~~~~~i~~y~~l~~~lig 276 (278)
++ +..||++.++-++..++.+......+..+++.++.
T Consensus 171 ll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~ 211 (334)
T PF06027_consen 171 LLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIIS 211 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 44 44599999999999999888888888888888764
No 20
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.43 E-value=1.8e-12 Score=100.58 Aligned_cols=105 Identities=20% Similarity=0.325 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCC----CCCcchHHHHHHHHHHHH-HHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHH
Q 023719 125 FMRCTVTLILSYLWLRRSGQPI----FGPMHARNLLVLRALVGF-LSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARI 199 (278)
Q Consensus 125 ~~R~~~a~l~l~~~~~~~~~~~----~~~~~~~~~~~l~g~~~~-~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l 199 (278)
.+|+.++.+++..+...+++.. ..+++.+...+..|+++. .++.++++|+++.| +.+..+.+++|+++++++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 5789998888877665544321 112234555666677665 88999999999999 58889999999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHhHHhhcccccc
Q 023719 200 ILREKLKIAEIGGLALSFFGVLFIFRRILTT 230 (278)
Q Consensus 200 ~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~ 230 (278)
++|||++++++++++++++|++++..++..+
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~~~ 111 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSDLTG 111 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhhccc
Confidence 9999999999999999999999998776543
No 21
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.39 E-value=3.9e-11 Score=103.22 Aligned_cols=174 Identities=11% Similarity=0.043 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 023719 92 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFV 171 (278)
Q Consensus 92 g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 171 (278)
.+++.+.+++.--...-+.|.+. ..+++.-++.+|..++.+++..+.+..+++ ..+++|..+...|+.....+.+||
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LF-P~vG~~g~t~lRl~~aaLIll~l~RPwr~r--~~~~~~~~~~~yGvsLg~MNl~FY 89 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLF-PLVGAAGVTALRLAIAALILLALFRPWRRR--LSKPQRLALLAYGVSLGGMNLLFY 89 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHc-cccChhhHHHHHHHHHHHHHHHHhhHHHhc--cChhhhHHHHHHHHHHHHHHHHHH
Confidence 56677777777777778889887 899999999999999999998887755433 245678889999999999999999
Q ss_pred HHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccccccchhhHHHH----HHHHHHH
Q 023719 172 YSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQGREVSLQKL----FYYAKNG 247 (278)
Q Consensus 172 ~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~g~l----~al~~A~ 247 (278)
.+++++|.+.+..+.|+.|+.+++++.- +.++.+.+.+++.|+.++.-.+.+ ....+..|.. .+.+|++
T Consensus 90 ~si~riPlGiAVAiEF~GPL~vA~~~sR------r~~d~vwvaLAvlGi~lL~p~~~~-~~~lDp~Gv~~Al~AG~~Wa~ 162 (292)
T COG5006 90 LSIERIPLGIAVAIEFTGPLAVALLSSR------RLRDFVWVALAVLGIWLLLPLGQS-VWSLDPVGVALALGAGACWAL 162 (292)
T ss_pred HHHHhccchhhhhhhhccHHHHHHHhcc------chhhHHHHHHHHHHHHhheeccCC-cCcCCHHHHHHHHHHhHHHHH
Confidence 9999999999999999999998877643 567788889999999887643322 2223344444 4556999
Q ss_pred HHHHhhhhhccCCchhHHHHHHHHHHHh
Q 023719 248 FHAYVNSQVFSGETRFICAYVAIDTSKI 275 (278)
Q Consensus 248 ~~i~~r~~~~~~~~~~i~~y~~l~~~li 275 (278)
|.+.-+|..+.++...-+.+.+++++++
T Consensus 163 YIv~G~r~g~~~~g~~g~a~gm~vAavi 190 (292)
T COG5006 163 YIVLGQRAGRAEHGTAGVAVGMLVAALI 190 (292)
T ss_pred HHHHcchhcccCCCchHHHHHHHHHHHH
Confidence 9999999998888888888888888774
No 22
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.38 E-value=2.4e-11 Score=109.69 Aligned_cols=133 Identities=15% Similarity=0.134 Sum_probs=102.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCcchHHHHHHHHHHHHHHHH
Q 023719 90 YSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQP-IFGPMHARNLLVLRALVGFLSLF 168 (278)
Q Consensus 90 ~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~ 168 (278)
..|.+++++++++|+.+.+..|... ++.++....+ ....+++.+.....+.. .....+.+..++..++...+++.
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~-~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~ 230 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYA-RGKNGITLFF---ILTALALWIKYFLSPQPAMVFSLPAIIKLLLAAAAMGFGYA 230 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcc-CCCCchhHHH---HHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHH
Confidence 4599999999999999999999975 6677765432 22233333222222221 11223445555666677778999
Q ss_pred HHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhcc
Q 023719 169 SFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR 226 (278)
Q Consensus 169 ~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~ 226 (278)
+|++++++.++++++.+.+++|++++++++++++|+++..+++|.++++.|+++....
T Consensus 231 l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~ 288 (295)
T PRK11689 231 AWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLA 288 (295)
T ss_pred HHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999887643
No 23
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.36 E-value=5.3e-11 Score=107.31 Aligned_cols=136 Identities=11% Similarity=-0.010 Sum_probs=105.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHH-HHHHHH
Q 023719 89 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRAL-VGFLSL 167 (278)
Q Consensus 89 ~~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~-~~~~~~ 167 (278)
...|.+++++++++|+.+.+..|... ++.++....... +++.+++.++..............+...+..|+ ...+++
T Consensus 146 ~~~G~ll~l~aa~~~a~~~v~~r~~~-~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~ 223 (293)
T PRK10532 146 DLTGAALALGAGACWAIYILSGQRAG-AEHGPATVAIGS-LIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPY 223 (293)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHh-ccCCchHHHHHH-HHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHH
Confidence 35699999999999999999999975 677887765544 455555555544432211112223333334444 455788
Q ss_pred HHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhcc
Q 023719 168 FSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR 226 (278)
Q Consensus 168 ~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~ 226 (278)
.+|++++++.++++++.+.+++|++++++++++++|+++..+++|.+++++|+++....
T Consensus 224 ~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 224 SLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT 282 (293)
T ss_pred HHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999999999999999999888644
No 24
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.33 E-value=9.6e-11 Score=105.56 Aligned_cols=135 Identities=15% Similarity=0.147 Sum_probs=107.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCCcchHHHHHHHHHH-HHH
Q 023719 89 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPI--FGPMHARNLLVLRALV-GFL 165 (278)
Q Consensus 89 ~~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~--~~~~~~~~~~~l~g~~-~~~ 165 (278)
...|.+++++++++|+.+.+..|... . -++.....+++.++.+++.++....+... ....+.|..++..+++ ..+
T Consensus 148 ~~~G~l~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~ 225 (292)
T PRK11272 148 NPWGAILILIASASWAFGSVWSSRLP-L-PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSII 225 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcC-C-CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999964 3 34556677888888777766655433221 1223345455555554 568
Q ss_pred HHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhc
Q 023719 166 SLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 225 (278)
Q Consensus 166 ~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~ 225 (278)
++.+|++++++.++++++.+.+++|+++++++++++||+++..+++|.++++.|++++..
T Consensus 226 ~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 226 AISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTL 285 (292)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999988754
No 25
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.28 E-value=2.8e-10 Score=105.36 Aligned_cols=136 Identities=11% Similarity=0.136 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCH-HHHHHHHHHHHHHHHHHHHHH-hCC--CCC-CCcc-hHHHHHHHHHHH
Q 023719 90 YSGLMCMALSSTIYFFMQVISDVFMVQSIPL-FETVFMRCTVTLILSYLWLRR-SGQ--PIF-GPMH-ARNLLVLRALVG 163 (278)
Q Consensus 90 ~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p-~~~~~~R~~~a~l~l~~~~~~-~~~--~~~-~~~~-~~~~~~l~g~~~ 163 (278)
..|.+++++++++|+++.++.|... ...++ ....++...++.+.+.+.... .+. ..+ .... ....++..++..
T Consensus 188 ~lG~~l~l~aa~~wa~~~il~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~t 266 (358)
T PLN00411 188 LIGGALLTIQGIFVSVSFILQAHIM-SEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIIT 266 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHHH
Confidence 4589999999999999999999875 55655 456667666665554433322 221 111 0011 112233445555
Q ss_pred HHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhcc
Q 023719 164 FLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR 226 (278)
Q Consensus 164 ~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~ 226 (278)
.+++.+|++++++.+++.++...++.|++++++++++++|+++..+++|.+++++|++++..+
T Consensus 267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~ 329 (358)
T PLN00411 267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWG 329 (358)
T ss_pred HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence 678889999999999999999999999999999999999999999999999999999998754
No 26
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.23 E-value=6.6e-11 Score=106.01 Aligned_cols=133 Identities=13% Similarity=0.110 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHH----HHHHHHHHHHHHHHHHHHH-HhCCCC-CCCcchHHHHHHHHHHH
Q 023719 90 YSGLMCMALSSTIYFFMQVISDVFMVQSIPLF----ETVFMRCTVTLILSYLWLR-RSGQPI-FGPMHARNLLVLRALVG 163 (278)
Q Consensus 90 ~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~----~~~~~R~~~a~l~l~~~~~-~~~~~~-~~~~~~~~~~~l~g~~~ 163 (278)
..|..++++++++|+.+.+..|... .+.++. ....+.++...+.+..+.. ..+... ....+.+......++..
T Consensus 143 ~~g~~~~l~aal~~a~~~i~~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 221 (281)
T TIGR03340 143 RKAYAWALAAALGTAIYSLSDKAAA-LGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMI 221 (281)
T ss_pred hhHHHHHHHHHHHHHHhhhhccccc-cchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHH
Confidence 4688899999999999999998753 334432 2233333333222222222 222211 12233445566777778
Q ss_pred HHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHh
Q 023719 164 FLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI 223 (278)
Q Consensus 164 ~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li 223 (278)
.+++.+|++++++.+++.++.+.+++|+++.+++++++||+++..+++|.+++++|++++
T Consensus 222 ~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l~ 281 (281)
T TIGR03340 222 GGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVVL 281 (281)
T ss_pred HHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHhC
Confidence 889999999999999999999999999999999999999999999999999999999863
No 27
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.18 E-value=2.3e-09 Score=96.96 Aligned_cols=137 Identities=15% Similarity=0.151 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCC---HHHHHHHHHHHHHHHHHHHHH-HhCCC------CCCCcchHHHHHHH
Q 023719 90 YSGLMCMALSSTIYFFMQVISDVFMVQSIP---LFETVFMRCTVTLILSYLWLR-RSGQP------IFGPMHARNLLVLR 159 (278)
Q Consensus 90 ~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~---p~~~~~~R~~~a~l~l~~~~~-~~~~~------~~~~~~~~~~~~l~ 159 (278)
..|.+++++++++|+.+.+..|... +..+ .....++-..++.+.+..... ..+.. ...+...+..++..
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 220 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIM-SHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYL 220 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-cccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHH
Confidence 4699999999999999999999864 3222 233344444444433332222 12111 11122334444444
Q ss_pred H-HHHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccc
Q 023719 160 A-LVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI 227 (278)
Q Consensus 160 g-~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~ 227 (278)
+ +...+++.+|++++++.++.+++.+.+++|+++.++++++++|+++..+++|.+++++|+++...+.
T Consensus 221 ~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 221 AFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence 4 5555789999999999999999999999999999999999999999999999999999998876544
No 28
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.09 E-value=4.4e-09 Score=94.96 Aligned_cols=134 Identities=16% Similarity=0.188 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCcchHHHHHHHHHHHHHHHHHHH
Q 023719 94 MCMALSSTIYFFMQVISDVFMVQS-IPLFETVFMRCTVTLILSYLWLRRSGQP-IFGPMHARNLLVLRALVGFLSLFSFV 171 (278)
Q Consensus 94 l~~l~aa~~~~~~~v~~k~~~~~~-~~p~~~~~~R~~~a~l~l~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~ 171 (278)
+++++++++|+.+.+..|....+. .+......+-..++.+.+.......... ...+...+...+..|+...+++.+|+
T Consensus 152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~i~~~~~~ 231 (296)
T PRK15430 152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFT 231 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccCCcccccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999863111 1223333333333333322211100000 01111223445556767779999999
Q ss_pred HHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccc
Q 023719 172 YSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI 227 (278)
Q Consensus 172 ~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~ 227 (278)
+++++.+++.++.+.+++|+++.++++++++|+++..+++|.+++++|+.++...+
T Consensus 232 ~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~ 287 (296)
T PRK15430 232 AAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDA 287 (296)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998877543
No 29
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.07 E-value=3.1e-09 Score=96.13 Aligned_cols=137 Identities=13% Similarity=0.143 Sum_probs=104.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc---------c---hHH
Q 023719 89 RYSGLMCMALSSTIYFFMQVISDVFMVQ--SIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPM---------H---ARN 154 (278)
Q Consensus 89 ~~~g~l~~l~aa~~~~~~~v~~k~~~~~--~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~---------~---~~~ 154 (278)
+..|.+++++++++|+++.+..|... + ++++.++..+.+..+.+++.++....+....... . .+.
T Consensus 143 ~~~G~~~~l~a~~~~a~~~v~~k~~~-~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (302)
T TIGR00817 143 NWAGFLSAMISNITFVSRNIFSKKAM-TIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYT 221 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHH
Confidence 35699999999999999999999975 5 7899999999999888888777553321110000 0 011
Q ss_pred HHHHHHH-HHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhcc
Q 023719 155 LLVLRAL-VGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR 226 (278)
Q Consensus 155 ~~~l~g~-~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~ 226 (278)
..+..++ .....+.+++++++++++..+++..+..|++++++++++++|+++..+++|.+++++|+++....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~ 294 (302)
T TIGR00817 222 VSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRV 294 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 1112222 11222346778999999999999999999999999999999999999999999999999887643
No 30
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.05 E-value=1.7e-08 Score=89.36 Aligned_cols=134 Identities=20% Similarity=0.278 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHH-HHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHH-HHH
Q 023719 90 YSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVF-MRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGF-LSL 167 (278)
Q Consensus 90 ~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~-~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~-~~~ 167 (278)
..|.+++++++++|+.+.+..|... ..++....+ +.+.....+.......... .....+.+......|+.+. +++
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~i~~ 229 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLLLLFFLSGFG-APILSRAWLLLLYLGVFSTGLAY 229 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHHhcccc-ccCCHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999864 567766666 4443222222222222221 2223445666777777776 699
Q ss_pred HHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhcc
Q 023719 168 FSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR 226 (278)
Q Consensus 168 ~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~ 226 (278)
.++++++++.+++.++.+.++.|++..++++++++|+++..+++|..+++.|+.+....
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 230 LLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999988654
No 31
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.99 E-value=1.1e-08 Score=92.28 Aligned_cols=128 Identities=18% Similarity=0.234 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHH----HHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHH
Q 023719 90 YSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCT----VTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFL 165 (278)
Q Consensus 90 ~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~----~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 165 (278)
.+|++++++++++++.+.+..|.. +.+|.+..+.... .+.++..+. ++. +... .+..+..++.|++..+
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~-~~~~-~~~~~~~~~~Gi~~~i 223 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH--ILA-KPLK-KYAILLNILPGLMWGI 223 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH--hcc-cchH-HHHHHHHHHHHHHHHH
Confidence 679999999999999999999984 4888888665554 333333333 111 1122 2233445558888888
Q ss_pred HHHHHHHHhh-cCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHH----HHHHHHHHHhHHhh
Q 023719 166 SLFSFVYSIQ-RLPLSQATVLSFTAPIMASIAARIILREKLKIAEI----GGLALSFFGVLFIF 224 (278)
Q Consensus 166 ~~~~~~~al~-~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~----~gi~l~~~Gv~li~ 224 (278)
++.+|+.+.+ +.+++.+.++.+..|+..++++++++||+.+++++ +|.++++.|+.++.
T Consensus 224 a~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 224 GNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence 9999999999 99999999999999999999999999999999999 99999999998864
No 32
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.90 E-value=1.1e-07 Score=77.10 Aligned_cols=131 Identities=21% Similarity=0.273 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc------CCCHHHHHHHHHHHHHHHHHHHHHHhCCCC--------CC-----Ccch
Q 023719 92 GLMCMALSSTIYFFMQVISDVFMVQ------SIPLFETVFMRCTVTLILSYLWLRRSGQPI--------FG-----PMHA 152 (278)
Q Consensus 92 g~l~~l~aa~~~~~~~v~~k~~~~~------~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~--------~~-----~~~~ 152 (278)
|.++++.+.++.++..+..|....+ ..++.++..+-...+.+++.+.....+... .. ..+.
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 5788999999999999999997644 689999999999999988887654332211 00 2244
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHH
Q 023719 153 RNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLF 222 (278)
Q Consensus 153 ~~~~~l~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~l 222 (278)
+..++..|++.+..+.+.|..++++++-..+++...-.+++.++++++++|+++..+++|++++++|+++
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 5566777888888888999999999999999999999999999999999999999999999999999875
No 33
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.90 E-value=8.4e-08 Score=74.21 Aligned_cols=65 Identities=15% Similarity=0.161 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhc
Q 023719 161 LVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 225 (278)
Q Consensus 161 ~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~ 225 (278)
++...++.++..++++.|.+.|..+.++.++++++++++++|||++.++++|+.++++|++++..
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 44456788899999999999999999999999999999999999999999999999999988753
No 34
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.88 E-value=1.2e-07 Score=87.66 Aligned_cols=135 Identities=10% Similarity=0.204 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhc------CCCHHHHHHHHHHHHHHHHHHHHH-HhCCC---C------CCCcchH
Q 023719 90 YSGLMCMALSSTIYFFMQVISDVFMVQ------SIPLFETVFMRCTVTLILSYLWLR-RSGQP---I------FGPMHAR 153 (278)
Q Consensus 90 ~~g~l~~l~aa~~~~~~~v~~k~~~~~------~~~p~~~~~~R~~~a~l~l~~~~~-~~~~~---~------~~~~~~~ 153 (278)
..|.+++++++++|++..+..|....+ ..++.++..+-..++.++++++.. ..... . ......+
T Consensus 193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~ 272 (350)
T PTZ00343 193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK 272 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence 459999999999999999999997632 356777776667788877777654 22110 0 0001011
Q ss_pred HHHHHHHHHHHHHHHH----HHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhh
Q 023719 154 NLLVLRALVGFLSLFS----FVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 224 (278)
Q Consensus 154 ~~~~l~g~~~~~~~~~----~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~ 224 (278)
..++...+...+.+.+ -|++++++++..+++...+.|+++.++++++++|+++..+++|.+++++|+++..
T Consensus 273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS 347 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence 1122223333344444 4579999999999999999999999999999999999999999999999998753
No 35
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=98.88 E-value=2.3e-08 Score=90.73 Aligned_cols=121 Identities=14% Similarity=0.126 Sum_probs=96.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccc
Q 023719 150 MHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILT 229 (278)
Q Consensus 150 ~~~~~~~~l~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~ 229 (278)
++..+..+..+.+-+.+.+.+-.|+.+++++..+++..+.-+|+..++.++-.||+++.+.++.++.+.||+++...+..
T Consensus 156 ~~~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~ 235 (416)
T KOG2765|consen 156 TQTAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSK 235 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccc
Confidence 44566677777888889999999999999999999999999999999999999999999999999999999999876432
Q ss_pred c----ccc----hhhHHHHHHHHHHHHHHHhhhhhccC-CchhHHHHHHH
Q 023719 230 T----QGR----EVSLQKLFYYAKNGFHAYVNSQVFSG-ETRFICAYVAI 270 (278)
Q Consensus 230 ~----~~~----~~~~g~l~al~~A~~~i~~r~~~~~~-~~~~i~~y~~l 270 (278)
. ... +..++++.++.||.|.++.||...++ .-..+-.++..
T Consensus 236 ~~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGf 285 (416)
T KOG2765|consen 236 QNSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGF 285 (416)
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHH
Confidence 1 111 33445555666999999999988776 34444444433
No 36
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.87 E-value=8.8e-08 Score=82.80 Aligned_cols=132 Identities=14% Similarity=0.066 Sum_probs=108.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHH-HHH
Q 023719 89 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGF-LSL 167 (278)
Q Consensus 89 ~~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~-~~~ 167 (278)
+..|..+++.++.||+.+-+..|.+. ...+.-.-+..-+.+++++.+++-..+.......+.....-+..++++. +-|
T Consensus 146 Dp~Gv~~Al~AG~~Wa~YIv~G~r~g-~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPY 224 (292)
T COG5006 146 DPVGVALALGAGACWALYIVLGQRAG-RAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPY 224 (292)
T ss_pred CHHHHHHHHHHhHHHHHHHHHcchhc-ccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccch
Confidence 47899999999999999999999975 4566667777888999999998877665544433344444444455444 678
Q ss_pred HHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhH
Q 023719 168 FSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVL 221 (278)
Q Consensus 168 ~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~ 221 (278)
.+-..+++++|...=+++.+++|.+.++.++++++|+++..||+++.+++++..
T Consensus 225 sLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa 278 (292)
T COG5006 225 SLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA 278 (292)
T ss_pred HHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 889999999999999999999999999999999999999999999998887764
No 37
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.86 E-value=1.4e-07 Score=74.81 Aligned_cols=121 Identities=21% Similarity=0.194 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 023719 91 SGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSF 170 (278)
Q Consensus 91 ~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 170 (278)
.|+++++.+.++-+...++.|... ++.+..+.... .. ..+.. . ......+.++.++..+++.+|
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~-~~~g~~~~~~~-~~-~~~~~------~-------~~p~~~i~lgl~~~~la~~~w 65 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGM-SRLPLLSHAWD-FI-AALLA------F-------GLALRAVLLGLAGYALSMLCW 65 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH-hhCCCccchhH-HH-HHHHH------H-------hccHHHHHHHHHHHHHHHHHH
Confidence 378899999999999999999976 44444332221 10 00000 0 011234566666777899999
Q ss_pred HHHhhcCchHHHHHHHhhHHHHHHHHHHH--HhcCCCcHHHHHHHHHHHHHhHHhhccc
Q 023719 171 VYSIQRLPLSQATVLSFTAPIMASIAARI--ILREKLKIAEIGGLALSFFGVLFIFRRI 227 (278)
Q Consensus 171 ~~al~~~~~~~a~~l~~~~Pl~~~lla~l--~l~Er~~~~~~~gi~l~~~Gv~li~~~~ 227 (278)
.+++++.|++.|..+.+..+.++.+.++. ++||+++..+++|++++++|++++..++
T Consensus 66 ~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 66 LKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999888885 8999999999999999999999987543
No 38
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.84 E-value=6.8e-07 Score=80.99 Aligned_cols=155 Identities=12% Similarity=0.092 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHH
Q 023719 120 LFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARI 199 (278)
Q Consensus 120 p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l 199 (278)
|..+.+..+....+.........+.. ..++..++.....+++..++..+-..|++++|...-.++-...|+++++++++
T Consensus 32 ~~~lt~~q~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l 110 (303)
T PF08449_consen 32 PLFLTFVQFAFNALFSFILLSLFKFP-KSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVL 110 (303)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcccc-CCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHH
Confidence 78888999888887766655544412 22334456667778888899999999999999999999999999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHhHHhhcccccccc----c--hhhHHHHHH----HHHHHHHHHhhhhhcc--CCchhHHHH
Q 023719 200 ILREKLKIAEIGGLALSFFGVLFIFRRILTTQG----R--EVSLQKLFY----YAKNGFHAYVNSQVFS--GETRFICAY 267 (278)
Q Consensus 200 ~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~~----~--~~~~g~l~a----l~~A~~~i~~r~~~~~--~~~~~i~~y 267 (278)
++|+|.++++++++++..+|+++....+..... . ....|+++. ++.|...++.++..++ .++...++|
T Consensus 111 ~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy 190 (303)
T PF08449_consen 111 ILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFY 190 (303)
T ss_pred hcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 999999999999999999999998755432211 1 111244332 3367888888888654 456689999
Q ss_pred HHHHHHHh
Q 023719 268 VAIDTSKI 275 (278)
Q Consensus 268 ~~l~~~li 275 (278)
.++++.++
T Consensus 191 ~n~~~~~~ 198 (303)
T PF08449_consen 191 TNLFSLPF 198 (303)
T ss_pred HHHHHHHH
Confidence 99887764
No 39
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.49 E-value=3e-06 Score=74.98 Aligned_cols=121 Identities=18% Similarity=0.239 Sum_probs=93.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHH
Q 023719 87 GSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLS 166 (278)
Q Consensus 87 ~~~~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 166 (278)
++..+|++..+++.+.+..+.++.|. .++++.+..+-..+--.+.-..+....++..+ .++ -+.-++.|++-.++
T Consensus 134 ~~~~kgi~~Ll~stigy~~Y~~~~~~---~~~~~~~~~lPqaiGm~i~a~i~~~~~~~~~~-~k~-~~~nil~G~~w~ig 208 (269)
T PF06800_consen 134 SNMKKGILALLISTIGYWIYSVIPKA---FHVSGWSAFLPQAIGMLIGAFIFNLFSKKPFF-EKK-SWKNILTGLIWGIG 208 (269)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHh---cCCChhHhHHHHHHHHHHHHHHHhhccccccc-ccc-hHHhhHHHHHHHHH
Confidence 34578999999999999999999998 46788887775544333333333332222222 233 34558889999999
Q ss_pred HHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHH
Q 023719 167 LFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGG 212 (278)
Q Consensus 167 ~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~g 212 (278)
..+++.+.+....+.+-.+..+.+++..+.+.+++||+=+++++..
T Consensus 209 nl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~ 254 (269)
T PF06800_consen 209 NLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIY 254 (269)
T ss_pred HHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHH
Confidence 9999999999999999999999999999999999999999987653
No 40
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=98.40 E-value=7.7e-06 Score=71.97 Aligned_cols=111 Identities=15% Similarity=0.097 Sum_probs=87.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccc
Q 023719 150 MHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILT 229 (278)
Q Consensus 150 ~~~~~~~~l~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~ 229 (278)
+++.....+=+++..+...+.|.++++++++.=.++..+-.+++++++++++|+|++++||+++++.++|+.++-..+..
T Consensus 14 ~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 14 PKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 34455566667788889999999999999999999999999999999999999999999999999999999988644332
Q ss_pred c----c---------cchhhHHHHHH----HHHHHHHHHhhhhhccCC
Q 023719 230 T----Q---------GREVSLQKLFY----YAKNGFHAYVNSQVFSGE 260 (278)
Q Consensus 230 ~----~---------~~~~~~g~l~a----l~~A~~~i~~r~~~~~~~ 260 (278)
. . ......|.++. +..++..++..+..++.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~ 141 (244)
T PF04142_consen 94 SSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSN 141 (244)
T ss_pred ccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 2 0 11233554433 347889999998877653
No 41
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.37 E-value=1.4e-05 Score=73.17 Aligned_cols=138 Identities=19% Similarity=0.119 Sum_probs=105.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH-HhCCC---CCCCcchHHHHHHHHHH
Q 023719 87 GSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLR-RSGQP---IFGPMHARNLLVLRALV 162 (278)
Q Consensus 87 ~~~~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~-~~~~~---~~~~~~~~~~~~l~g~~ 162 (278)
+++.+|.++++++++++|.+.+.-+... .+.+..+...+-.+++.++..+... .++.. ...+.+....++...++
T Consensus 164 ~~~i~GDll~l~~a~lya~~nV~~E~~v-~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~ 242 (334)
T PF06027_consen 164 SNPILGDLLALLGAILYAVSNVLEEKLV-KKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALC 242 (334)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhc-ccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHH
Confidence 3557899999999999999999999976 7889888887777777777665433 22211 11122233333444444
Q ss_pred HHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhc
Q 023719 163 GFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 225 (278)
Q Consensus 163 ~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~ 225 (278)
.+..+.+.-..++..++....+=.-+..+++++++.+++|+++++..++|.+++.+|.++...
T Consensus 243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~ 305 (334)
T PF06027_consen 243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNL 305 (334)
T ss_pred HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEc
Confidence 555566666788888888888878899999999999999999999999999999999988753
No 42
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.27 E-value=5.6e-05 Score=68.49 Aligned_cols=136 Identities=19% Similarity=0.243 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHHHHHH--hCCCC------CCCcchHHHHHHHHH
Q 023719 91 SGLMCMALSSTIYFFMQVISDVFMV-QSIPLFETVFMRCTVTLILSYLWLRR--SGQPI------FGPMHARNLLVLRAL 161 (278)
Q Consensus 91 ~g~l~~l~aa~~~~~~~v~~k~~~~-~~~~p~~~~~~R~~~a~l~l~~~~~~--~~~~~------~~~~~~~~~~~l~g~ 161 (278)
.|+++++++.++-|...+..+.... .+.++.+.+++-..++.++..+.... .+... ...+..+..+++..+
T Consensus 154 ~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~ 233 (303)
T PF08449_consen 154 LGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL 233 (303)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH
Confidence 3999999999999999999988753 57889999999999988877665544 22211 122335667778888
Q ss_pred HHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhcc
Q 023719 162 VGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR 226 (278)
Q Consensus 162 ~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~ 226 (278)
.+.++..+.++-+++.++-..+++..+--+++.+++.++++++++..+|.|+++.+.|..+-..+
T Consensus 234 ~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~ 298 (303)
T PF08449_consen 234 TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYA 298 (303)
T ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHh
Confidence 88899988889999999999999999999999999999999999999999999999999876543
No 43
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.19 E-value=1.1e-05 Score=73.10 Aligned_cols=119 Identities=21% Similarity=0.201 Sum_probs=85.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHH
Q 023719 87 GSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLS 166 (278)
Q Consensus 87 ~~~~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 166 (278)
.+...|++++++++++.+....+.|.... ..+. .-.|- .++.....+++.|+ .+-+...++
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~-r~~~---~~~~~------------~~~~~~~l~~~~W~---~G~~~~~~g 63 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHL-RLPR---GSLRA------------GSGGRSYLRRPLWW---IGLLLMVLG 63 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhc---ccccc------------cchhhHHHhhHHHH---HHHHHHhcc
Confidence 45578999999999999999999998541 1110 00000 00000000111122 222334567
Q ss_pred HHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhh
Q 023719 167 LFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 224 (278)
Q Consensus 167 ~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~ 224 (278)
..+.+.|+.+.|.+..+.+..+.-++.++++.+++|||++++++.|..++++|+.+++
T Consensus 64 ~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 64 EILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred hHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence 7788899999999999999999999999999999999999999999999999998765
No 44
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=98.16 E-value=0.0001 Score=56.70 Aligned_cols=70 Identities=19% Similarity=0.169 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCchHHHHHH-HhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHh
Q 023719 154 NLLVLRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI 223 (278)
Q Consensus 154 ~~~~l~g~~~~~~~~~~~~al~~~~~~~a~~l-~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li 223 (278)
...+...+...++++++..+++++|.+.|=.+ ....-+.+++.+++++||+++..+++|+.++++|++.+
T Consensus 36 ~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 36 IYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 33455556666788889999999999999655 55899999999999999999999999999999999875
No 45
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.15 E-value=0.0002 Score=63.51 Aligned_cols=128 Identities=16% Similarity=0.218 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCC----CCCcchHHHHHHHHHHHHHHHHHHH
Q 023719 96 MALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPI----FGPMHARNLLVLRALVGFLSLFSFV 171 (278)
Q Consensus 96 ~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~----~~~~~~~~~~~l~g~~~~~~~~~~~ 171 (278)
.+.-++.|+.++.+=|. -++++.+-..+-.+.-.++.+.+........ ......+.+++..|....+...+|.
T Consensus 153 al~la~sf~~Ygl~RK~---~~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~ 229 (293)
T COG2962 153 ALALALSFGLYGLLRKK---LKVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFA 229 (293)
T ss_pred HHHHHHHHHHHHHHHHh---cCCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHH
Confidence 34456678888888777 3677777777766665555544443322221 1345667888999999999999999
Q ss_pred HHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhcc
Q 023719 172 YSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR 226 (278)
Q Consensus 172 ~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~ 226 (278)
.|-+++|.+.-..+.|.+|.+..+++.++++|+++..|+.+-+++-+|+++....
T Consensus 230 ~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d 284 (293)
T COG2962 230 AAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSID 284 (293)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999887643
No 46
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=98.15 E-value=0.00064 Score=61.89 Aligned_cols=168 Identities=14% Similarity=0.113 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHHHHHHHHHhC-----CCC-------CCCcchHHHH
Q 023719 92 GLMCMALSSTIYFFMQVISDVFMVQS---IPLFETVFMRCTVTLILSYLWLRRSG-----QPI-------FGPMHARNLL 156 (278)
Q Consensus 92 g~l~~l~aa~~~~~~~v~~k~~~~~~---~~p~~~~~~R~~~a~l~l~~~~~~~~-----~~~-------~~~~~~~~~~ 156 (278)
=++.+++..+.++......|+....+ +.|...++.-=++-.++......++. +.. +..+++...+
T Consensus 16 k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~ 95 (345)
T KOG2234|consen 16 KYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKV 95 (345)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHH
Confidence 34566667777888888899975444 56666666665555555554444331 111 1111122233
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhcccccc---c--
Q 023719 157 VLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTT---Q-- 231 (278)
Q Consensus 157 ~l~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~---~-- 231 (278)
.+=+++.++.+.++|.++.+.+++.-.+...+--+-++++..+++|+|++++||.++++-++|+.++-.+.... .
T Consensus 96 ~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~ 175 (345)
T KOG2234|consen 96 SVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSE 175 (345)
T ss_pred HHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCC
Confidence 33345566666789999999999999999999999999999999999999999999999999999987332211 1
Q ss_pred --cchhhHHHHH----HHHHHHHHHHhhhhhccC
Q 023719 232 --GREVSLQKLF----YYAKNGFHAYVNSQVFSG 259 (278)
Q Consensus 232 --~~~~~~g~l~----al~~A~~~i~~r~~~~~~ 259 (278)
.....+|..+ +...+++.++..++.++.
T Consensus 176 ~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s 209 (345)
T KOG2234|consen 176 SSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGS 209 (345)
T ss_pred CcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1123344333 334788899999887653
No 47
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=98.11 E-value=2.9e-05 Score=58.97 Aligned_cols=70 Identities=20% Similarity=0.284 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchHHHHHH-HhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhh
Q 023719 155 LLVLRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 224 (278)
Q Consensus 155 ~~~l~g~~~~~~~~~~~~al~~~~~~~a~~l-~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~ 224 (278)
..++.-++...++.++-.+++++|.+.|=.+ ....-+.+++.++++|+|+++..+++++.++++|++.+-
T Consensus 32 ~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk 102 (106)
T COG2076 32 PSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLK 102 (106)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhh
Confidence 3455556666788899999999999999555 669999999999999999999999999999999998764
No 48
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.10 E-value=3.1e-05 Score=60.55 Aligned_cols=69 Identities=19% Similarity=0.319 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchHHHHHHH-hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhc
Q 023719 157 VLRALVGFLSLFSFVYSIQRLPLSQATVLS-FTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 225 (278)
Q Consensus 157 ~l~g~~~~~~~~~~~~al~~~~~~~a~~l~-~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~ 225 (278)
++..++..++++++..+++++|.+.|-.+. .+.-+.+++++++++||+++..+++|+.++++|++++-.
T Consensus 34 ~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 34 ILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 455666668889999999999999997774 689999999999999999999999999999999988753
No 49
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=98.10 E-value=0.00021 Score=57.31 Aligned_cols=129 Identities=18% Similarity=0.272 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC-HHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCcchHHHHHHHHHHHHHHHHHH
Q 023719 93 LMCMALSSTIYFFMQVISDVFMVQSIP-LFETVFMRCTVTLILSYLWLRRSGQ-PIFGPMHARNLLVLRALVGFLSLFSF 170 (278)
Q Consensus 93 ~l~~l~aa~~~~~~~v~~k~~~~~~~~-p~~~~~~R~~~a~l~l~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~ 170 (278)
+++++++..+-+.+..+.-.+. +..+ |+.-.++-+..+.+++..+....++ .....++..++..++|+++.....+.
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~-~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG~~~V~~~ 81 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLG-KALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLGVFFVLSN 81 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHHHHHHHHH
Confidence 5677888888888888877765 5555 9999999999998877766554433 22222334455677999999999999
Q ss_pred HHHhhcCchHHHHHHHhhHHHHH-HHHHHH----HhcCCCcHHHHHHHHHHHHHhHH
Q 023719 171 VYSIQRLPLSQATVLSFTAPIMA-SIAARI----ILREKLKIAEIGGLALSFFGVLF 222 (278)
Q Consensus 171 ~~al~~~~~~~a~~l~~~~Pl~~-~lla~l----~l~Er~~~~~~~gi~l~~~Gv~l 222 (278)
.+.+.+++++.+..+..+.-++. .++..+ .-|++++.+|++|+++.++|+++
T Consensus 82 ~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 82 IILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 99999999999988877555544 445553 35799999999999999999874
No 50
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=98.08 E-value=4.4e-05 Score=58.83 Aligned_cols=70 Identities=20% Similarity=0.216 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchHHHHHH-HhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhc
Q 023719 156 LVLRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 225 (278)
Q Consensus 156 ~~l~g~~~~~~~~~~~~al~~~~~~~a~~l-~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~ 225 (278)
.+...++..+++.++..+++++|.+.|-.+ ..+.-+.+++++++++||+++..+++|+.++++|++++-.
T Consensus 33 ~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 344555566788888999999999999766 5589999999999999999999999999999999998853
No 51
>PRK11431 multidrug efflux system protein; Provisional
Probab=98.05 E-value=5.6e-05 Score=57.73 Aligned_cols=69 Identities=19% Similarity=0.271 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchHHHHHH-HhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhh
Q 023719 156 LVLRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 224 (278)
Q Consensus 156 ~~l~g~~~~~~~~~~~~al~~~~~~~a~~l-~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~ 224 (278)
.+...++...+++++..+++++|.+.|=.+ ..+.-+.+++++++++||+++..+++|+.++++|++.+-
T Consensus 32 ~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 32 SIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 344455666788889999999999999655 559999999999999999999999999999999998863
No 52
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.00 E-value=0.00019 Score=63.13 Aligned_cols=104 Identities=17% Similarity=0.243 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCC---CCCCcchHHHHHHHHHHHHHHHHHH
Q 023719 94 MCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQP---IFGPMHARNLLVLRALVGFLSLFSF 170 (278)
Q Consensus 94 l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~ 170 (278)
.++++++++|+.+.+..|... ..+..+....-. ...++........... .....+.|..++..|++..+++.++
T Consensus 149 ~~~l~aa~~~a~~~i~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~i~~~l~ 225 (256)
T TIGR00688 149 WEALVLAFSFTAYGLIRKALK--NTDLAGFCLETL-SLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLITGTPLLAF 225 (256)
T ss_pred HHHHHHHHHHHHHHHHHhhcC--CCCcchHHHHHH-HHHHHHHHHHHHhccCcccccCchhHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999964 223333222221 1111221111111111 1122235777777788888999999
Q ss_pred HHHhhcCchHHHHHHHhhHHHHHHHHHHHH
Q 023719 171 VYSIQRLPLSQATVLSFTAPIMASIAARII 200 (278)
Q Consensus 171 ~~al~~~~~~~a~~l~~~~Pl~~~lla~l~ 200 (278)
++++++.+++.++.+.+++|+++++++.+.
T Consensus 226 ~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 226 VIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999764
No 53
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=97.96 E-value=3.2e-05 Score=59.63 Aligned_cols=110 Identities=12% Similarity=0.090 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhc
Q 023719 97 ALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQR 176 (278)
Q Consensus 97 l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~al~~ 176 (278)
++.+++||..+.+.|... .+.++..-.. |.......++ ..|++ .+--+++..+...||+.+..
T Consensus 2 l~Vg~~WG~Tnpfik~g~-~~~~~~~~~~-~~~~~~~~Ll--------------~n~~y-~ipf~lNq~GSv~f~~~L~~ 64 (113)
T PF10639_consen 2 LLVGILWGCTNPFIKRGS-SGLEKVKASL-QLLQEIKFLL--------------LNPKY-IIPFLLNQSGSVLFFLLLGS 64 (113)
T ss_pred eeehHHhcCchHHHHHHH-hhcCCccchH-HHHHHHHHHH--------------HhHHH-HHHHHHHHHHHHHHHHHHhc
Confidence 346789999999999976 4443322221 3222111110 12333 33445566788899999999
Q ss_pred CchHHHHHHH-hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHh
Q 023719 177 LPLSQATVLS-FTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI 223 (278)
Q Consensus 177 ~~~~~a~~l~-~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li 223 (278)
.+.+.+..+. .+.=+|+++.++++.+|..+++.++|++++++|+.+.
T Consensus 65 ~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 65 ADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred CCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 9999999995 6888999999988888888999999999999999764
No 54
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.96 E-value=0.00058 Score=62.83 Aligned_cols=136 Identities=10% Similarity=-0.002 Sum_probs=94.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHH-HHHHHHHH---HHHHHhC---CCCCCCcchHHHHHHH
Q 023719 87 GSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRC-TVTLILSY---LWLRRSG---QPIFGPMHARNLLVLR 159 (278)
Q Consensus 87 ~~~~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~-~~a~l~l~---~~~~~~~---~~~~~~~~~~~~~~l~ 159 (278)
++...|+++.+++++|||...+-.|.. ...+ +|..+.-. +++.++.. .....+. .....+.+.+...++.
T Consensus 3 ~~~~~G~~~~~i~~~~~GS~~~p~K~~--k~w~-wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~ 79 (345)
T PRK13499 3 NAIILGIIWHLIGGASSGSFYAPFKKV--KKWS-WETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLF 79 (345)
T ss_pred chhHHHHHHHHHHHHHhhccccccccc--CCCc-hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHH
Confidence 345679999999999999999999993 3333 33332211 11111111 0110100 0011234567778889
Q ss_pred HHHHHHHHHHHHHHhhcCchHHHHHHH-hhHHHHHHHHHHHHhcCCC-------cHHHHHHHHHHHHHhHHhhc
Q 023719 160 ALVGFLSLFSFVYSIQRLPLSQATVLS-FTAPIMASIAARIILREKL-------KIAEIGGLALSFFGVLFIFR 225 (278)
Q Consensus 160 g~~~~~~~~~~~~al~~~~~~~a~~l~-~~~Pl~~~lla~l~l~Er~-------~~~~~~gi~l~~~Gv~li~~ 225 (278)
|++-.+++..++.++++..++.+..+. .+.-++.+++..++++|-. ...-++|++++++|+++...
T Consensus 80 G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~ 153 (345)
T PRK13499 80 GALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR 153 (345)
T ss_pred HHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998874 4889999999999998754 23467889999999999876
No 55
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=97.88 E-value=4.7e-05 Score=69.11 Aligned_cols=162 Identities=12% Similarity=-0.023 Sum_probs=118.1
Q ss_pred HHHHHHhh--cCCCHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCCcchHHHHHHHHHHHHHHHHHHHHHhhcCchHHHH
Q 023719 108 VISDVFMV--QSIPLFETVFMRCTVTLILSYLWLRRSGQPI--FGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQAT 183 (278)
Q Consensus 108 v~~k~~~~--~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~al~~~~~~~a~ 183 (278)
+..|+... +---|..+..+++..+.+.+......+..+. ...+..++.++-.|++..++..+-..++++.|++-.-
T Consensus 34 ~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q 113 (316)
T KOG1441|consen 34 ILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQ 113 (316)
T ss_pred EeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHHH
Confidence 34466653 2223667777777776666655443332222 1234567778888999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccccccchhhHHHHHHH----HHHHHHHHhhhhhc--
Q 023719 184 VLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQGREVSLQKLFYY----AKNGFHAYVNSQVF-- 257 (278)
Q Consensus 184 ~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~g~l~al----~~A~~~i~~r~~~~-- 257 (278)
++-.++|+++.++++++.+|+.+...++.++.+..||.+-...+... +..|.+.++ ..+...|+.+++.+
T Consensus 114 ~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~f----n~~G~i~a~~s~~~~al~~I~~~~ll~~~ 189 (316)
T KOG1441|consen 114 TIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSF----NLFGFISAMISNLAFALRNILSKKLLTSK 189 (316)
T ss_pred HHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccc----cHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999998877644332 234444443 37889999998873
Q ss_pred --cCCchhHHHHHHHHHH
Q 023719 258 --SGETRFICAYVAIDTS 273 (278)
Q Consensus 258 --~~~~~~i~~y~~l~~~ 273 (278)
+.++.....|.+-++.
T Consensus 190 ~~~~~~~~ll~y~ap~s~ 207 (316)
T KOG1441|consen 190 GESLNSMNLLYYTAPISL 207 (316)
T ss_pred ccccCchHHHHHhhhHHH
Confidence 2466777777665544
No 56
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=0.0017 Score=58.43 Aligned_cols=182 Identities=14% Similarity=0.129 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-CCCH-HHHHHHHHHHHHHHHHHHHHHhCCCCC--CCcchHHHHHHHHHHHHHHHH
Q 023719 93 LMCMALSSTIYFFMQVISDVFMVQ-SIPL-FETVFMRCTVTLILSYLWLRRSGQPIF--GPMHARNLLVLRALVGFLSLF 168 (278)
Q Consensus 93 ~l~~l~aa~~~~~~~v~~k~~~~~-~~~p-~~~~~~R~~~a~l~l~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~ 168 (278)
+..++.-++.=.++.+..|.+... +.|. +.+...+.+...+.+...-+ .|--.. ..++..+..+-..++......
T Consensus 14 l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~-~~lv~~~~l~~~~~kk~~P~~~lf~~~i~ 92 (314)
T KOG1444|consen 14 LLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKR-LGLVNFRPLDLRTAKKWFPVSLLFVGMLF 92 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH-hceeecCCcChHHHHHHccHHHHHHHHHH
Confidence 344444444445566677877522 2332 33334777666555554332 221111 122233333444444555555
Q ss_pred HHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccccccchhhHHHHHHHHHHHH
Q 023719 169 SFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQGREVSLQKLFYYAKNGF 248 (278)
Q Consensus 169 ~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~g~l~al~~A~~ 248 (278)
.-..+++++++..-+++-...|+++++...+++|.|++...|.++....+|......++.+.+..+..+-..-.+.-+.+
T Consensus 93 t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~~~~a~~ 172 (314)
T KOG1444|consen 93 TGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANCLTTAAF 172 (314)
T ss_pred HccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHHHHHHHH
Confidence 56679999999999999999999999999999999999999999999999998888777655443444444555557788
Q ss_pred HHHhhhhhccC--CchhHHHHHHHHHHHh
Q 023719 249 HAYVNSQVFSG--ETRFICAYVAIDTSKI 275 (278)
Q Consensus 249 ~i~~r~~~~~~--~~~~i~~y~~l~~~li 275 (278)
.+..|+..+.. ....+++|.++....+
T Consensus 173 ~v~~kk~vd~~~l~~~~lv~yNnl~~L~~ 201 (314)
T KOG1444|consen 173 VVYVKKSVDSANLNKFGLVFYNNLLSLPP 201 (314)
T ss_pred HHHHHHhhccccccceeEEeehhHHHHHH
Confidence 89988876443 3445777777766543
No 57
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.76 E-value=1.9e-05 Score=69.13 Aligned_cols=134 Identities=13% Similarity=0.104 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCcchHHHHHHHHHHHHHHHH
Q 023719 90 YSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQP-IFGPMHARNLLVLRALVGFLSLF 168 (278)
Q Consensus 90 ~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~ 168 (278)
..|.+.++.++++-+...++.|+.. ...+......+-.+++.+.-++.+..-+.. .....++|++++..|+++++++.
T Consensus 190 ~~gt~aai~s~lf~asvyIilR~iG-k~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~cgkdr~l~~~lGvfgfigQI 268 (346)
T KOG4510|consen 190 IPGTVAAISSVLFGASVYIILRYIG-KNAHAIMSVSYFSLITLVVSLIGCASIGAVQLPHCGKDRWLFVNLGVFGFIGQI 268 (346)
T ss_pred CCchHHHHHhHhhhhhHHHHHHHhh-ccccEEEEehHHHHHHHHHHHHHHhhccceecCccccceEEEEEehhhhhHHHH
Confidence 4578888889999999999999976 556655444444444444433333222221 12234567788889999999999
Q ss_pred HHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhh
Q 023719 169 SFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 224 (278)
Q Consensus 169 ~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~ 224 (278)
+...++|.--++..++..++.-+++.++-.+|+||.++++.|.|++++....+.+.
T Consensus 269 llTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a 324 (346)
T KOG4510|consen 269 LLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVA 324 (346)
T ss_pred HHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHH
Confidence 99999999999999999999999999999999999999999999888776666554
No 58
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=97.76 E-value=0.00014 Score=61.10 Aligned_cols=102 Identities=10% Similarity=0.064 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccccccchhhHHHHHHH
Q 023719 164 FLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQGREVSLQKLFYY 243 (278)
Q Consensus 164 ~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~g~l~al 243 (278)
....+.|..|++.+++++++.+....-.|+-+++++.+|+|+...++++.++++.|++++...+... .....|+.+++
T Consensus 64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~--a~e~iGi~~AV 141 (290)
T KOG4314|consen 64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEH--ADEIIGIACAV 141 (290)
T ss_pred ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchh--hhhhhhHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999887655333 23456666655
Q ss_pred H----HHHHHHHhhhhhccCCchhHHHH
Q 023719 244 A----KNGFHAYVNSQVFSGETRFICAY 267 (278)
Q Consensus 244 ~----~A~~~i~~r~~~~~~~~~~i~~y 267 (278)
. .|.|-+..|+.....+-....-+
T Consensus 142 ~SA~~aAlYKV~FK~~iGnAn~Gdaa~F 169 (290)
T KOG4314|consen 142 GSAFMAALYKVLFKMFIGNANFGDAAHF 169 (290)
T ss_pred HHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 4 67888888887665544433333
No 59
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=97.66 E-value=0.0026 Score=56.34 Aligned_cols=121 Identities=9% Similarity=0.001 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccc----
Q 023719 154 NLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILT---- 229 (278)
Q Consensus 154 ~~~~l~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~---- 229 (278)
...+.=.++-..+..+.|.++.+++++.=..+....-+|+.+++.-+++.+++.++|+|+....+|++.+...+.-
T Consensus 87 ~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~ 166 (372)
T KOG3912|consen 87 VLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTD 166 (372)
T ss_pred ceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccC
Confidence 3444567888889999999999999999999999999999999999999999999999999999999888654321
Q ss_pred ccc--chhhHHHHHHH----HHHHHHHHhhhhhcc--CCchhHHHHHHHHHHH
Q 023719 230 TQG--REVSLQKLFYY----AKNGFHAYVNSQVFS--GETRFICAYVAIDTSK 274 (278)
Q Consensus 230 ~~~--~~~~~g~l~al----~~A~~~i~~r~~~~~--~~~~~i~~y~~l~~~l 274 (278)
... .....|.++.+ .-|+.+++=.|..++ .+|...+.|-.+++.+
T Consensus 167 p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v 219 (372)
T KOG3912|consen 167 PYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLV 219 (372)
T ss_pred CccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHH
Confidence 111 12334544433 367888888777654 5788899998888744
No 60
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.62 E-value=0.0026 Score=56.54 Aligned_cols=147 Identities=10% Similarity=0.006 Sum_probs=95.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHh-hHHHHHHHH
Q 023719 119 PLFETVFMRCTVTLILSYLWLRRSGQPIFG-PMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSF-TAPIMASIA 196 (278)
Q Consensus 119 ~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~-~~~~~~~~~l~g~~~~~~~~~~~~al~~~~~~~a~~l~~-~~Pl~~~ll 196 (278)
+|.+-.+--.+-+.++-+......+ +.+. ..+.+...++.|++-.+++...|.++++..++++..+.. ..=+.+.++
T Consensus 11 ~~~~Q~lG~t~Gali~alv~~~~~~-p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~ 89 (269)
T PF06800_consen 11 KPANQILGTTIGALIFALVVFLFRQ-PAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLI 89 (269)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHH
Confidence 4444444433444443333333332 2222 235677788899999999999999999999999999865 666778999
Q ss_pred HHHHhcCCCcHHHHH----HHHHHHHHhHHhhcccccccc----chhhHHHHH----HHHHHHHHHHhhhhhccCCchhH
Q 023719 197 ARIILREKLKIAEIG----GLALSFFGVLFIFRRILTTQG----REVSLQKLF----YYAKNGFHAYVNSQVFSGETRFI 264 (278)
Q Consensus 197 a~l~l~Er~~~~~~~----gi~l~~~Gv~li~~~~~~~~~----~~~~~g~l~----al~~A~~~i~~r~~~~~~~~~~i 264 (278)
+.++|+|.-+..+++ +++++++|+++....+..... .....|++. .+.|-.|.++.|-. +.++..+
T Consensus 90 gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~--~~~~~~~ 167 (269)
T PF06800_consen 90 GVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAF--HVSGWSA 167 (269)
T ss_pred HHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhc--CCChhHh
Confidence 999999998877654 888899999888755433321 122223332 33466777776653 3455555
Q ss_pred HHHH
Q 023719 265 CAYV 268 (278)
Q Consensus 265 ~~y~ 268 (278)
.+-+
T Consensus 168 ~lPq 171 (269)
T PF06800_consen 168 FLPQ 171 (269)
T ss_pred HHHH
Confidence 5443
No 61
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=97.60 E-value=3e-06 Score=73.55 Aligned_cols=185 Identities=12% Similarity=0.088 Sum_probs=119.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHH
Q 023719 90 YSGLMCMALSSTIYFFMQVISDVFMVQSIP-LFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLF 168 (278)
Q Consensus 90 ~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~-p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 168 (278)
+.|+.+.=+-.+|-.........+...+++ |..-.|+-+..-+++-.++...|++.. +..|+.-++.++...=+++
T Consensus 17 li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~~~---~~~~~hYilla~~DVEaNy 93 (336)
T KOG2766|consen 17 LIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRKYI---KAKWRHYILLAFVDVEANY 93 (336)
T ss_pred hheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhHHH---HHHHHHhhheeEEeecccE
Confidence 344444433334433333333333322232 444455555544455555554444222 1123344555666666666
Q ss_pred HHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccc----cccchhhHHHHH---
Q 023719 169 SFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILT----TQGREVSLQKLF--- 241 (278)
Q Consensus 169 ~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~----~~~~~~~~g~l~--- 241 (278)
+...|.|+++...+..+-.-.-..+.+++|+|+|-|-++.++.|.+++..||++++..+.- ..+.+...|..+
T Consensus 94 ~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~ 173 (336)
T KOG2766|consen 94 FVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIA 173 (336)
T ss_pred EEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEe
Confidence 7778999999999999988777778899999999999999999999999999998754321 222333444332
Q ss_pred -HHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHhcC
Q 023719 242 -YYAKNGFHAYVNSQVFSGETRFICAYVAIDTSKIGT 277 (278)
Q Consensus 242 -al~~A~~~i~~r~~~~~~~~~~i~~y~~l~~~lig~ 277 (278)
+-+||...+.-..+.++.+...++....++|+++++
T Consensus 174 GATlYaVSNv~EEflvkn~d~~elm~~lgLfGaIIsa 210 (336)
T KOG2766|consen 174 GATLYAVSNVSEEFLVKNADRVELMGFLGLFGAIISA 210 (336)
T ss_pred cceeeeeccccHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 233888888888888888888888888888888764
No 62
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.58 E-value=0.00034 Score=52.20 Aligned_cols=60 Identities=20% Similarity=0.288 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchHHHHHH-HhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 023719 157 VLRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALS 216 (278)
Q Consensus 157 ~l~g~~~~~~~~~~~~al~~~~~~~a~~l-~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~ 216 (278)
+....+...++.++..++++.|.+.+-.+ ..+..+.+++.+.+++||+++..+++|+.++
T Consensus 33 ~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 33 ILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp -HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 33444566778889999999999999655 5699999999999999999999999998864
No 63
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=97.43 E-value=0.00058 Score=62.08 Aligned_cols=136 Identities=17% Similarity=0.286 Sum_probs=104.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhh---cCCCHHHHHHHHHHHHHHHHH-HHHHHhCCCCC-------CCcchHHHHH
Q 023719 89 RYSGLMCMALSSTIYFFMQVISDVFMV---QSIPLFETVFMRCTVTLILSY-LWLRRSGQPIF-------GPMHARNLLV 157 (278)
Q Consensus 89 ~~~g~l~~l~aa~~~~~~~v~~k~~~~---~~~~p~~~~~~R~~~a~l~l~-~~~~~~~~~~~-------~~~~~~~~~~ 157 (278)
+..|...++++.+..++..++.|.... ..++++++.....-++...++ |+......... ...... ..+
T Consensus 161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~-~~~ 239 (316)
T KOG1441|consen 161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFL-ILL 239 (316)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhH-HHH
Confidence 467999999999999999999999862 468999999988888888888 76553222111 111112 222
Q ss_pred HHHHHHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhc
Q 023719 158 LRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 225 (278)
Q Consensus 158 l~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~ 225 (278)
+..++.+..+..-|..+.++++-.=.+....=-+++...++++|+++++..+.+|.+++++|+++-.+
T Consensus 240 ~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~ 307 (316)
T KOG1441|consen 240 LNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSR 307 (316)
T ss_pred HHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHH
Confidence 23355556667788899999998888888777778889999999999999999999999999988653
No 64
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.41 E-value=0.0088 Score=55.14 Aligned_cols=138 Identities=10% Similarity=0.042 Sum_probs=88.5
Q ss_pred CCchHHHHHHHHHHHHHHHHH-------HHHHHHhhcCCCHHHHHHHHHH---HHHHHHH-HHHH---HhCCCC-----C
Q 023719 87 GSRYSGLMCMALSSTIYFFMQ-------VISDVFMVQSIPLFETVFMRCT---VTLILSY-LWLR---RSGQPI-----F 147 (278)
Q Consensus 87 ~~~~~g~l~~l~aa~~~~~~~-------v~~k~~~~~~~~p~~~~~~R~~---~a~l~l~-~~~~---~~~~~~-----~ 147 (278)
.+..||++.++++.+..+... ...+.....+.++.....-.+. ++.++.- .+.. ++++.. +
T Consensus 170 ~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~ 249 (345)
T PRK13499 170 FNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADF 249 (345)
T ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhc
Confidence 345789999999999999998 5555432245666655554444 3333322 2222 122221 1
Q ss_pred C-Cc----chHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHH---HH-hhHHHHHHHHHHHHhcCCCc------HHHHHH
Q 023719 148 G-PM----HARNLLVLRALVGFLSLFSFVYSIQRLPLSQATV---LS-FTAPIMASIAARIILREKLK------IAEIGG 212 (278)
Q Consensus 148 ~-~~----~~~~~~~l~g~~~~~~~~~~~~al~~~~~~~a~~---l~-~~~Pl~~~lla~l~l~Er~~------~~~~~g 212 (278)
. ++ ++.....+.|+.-.+++.+|+.+-+..+.+.+.+ +. .+..++..+.+. ++||+=+ +.-++|
T Consensus 250 ~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G 328 (345)
T PRK13499 250 SLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLG 328 (345)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHH
Confidence 1 11 2222336677777788888888888887776666 66 566677777776 6999988 455788
Q ss_pred HHHHHHHhHHhhc
Q 023719 213 LALSFFGVLFIFR 225 (278)
Q Consensus 213 i~l~~~Gv~li~~ 225 (278)
+++.++|..++..
T Consensus 329 ~vliI~g~~lig~ 341 (345)
T PRK13499 329 CVVIILAANIVGL 341 (345)
T ss_pred HHHHHHHHHHHhh
Confidence 8888888887754
No 65
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=97.30 E-value=0.0051 Score=55.04 Aligned_cols=136 Identities=15% Similarity=0.164 Sum_probs=109.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCHHHHHHHHHHHHHHHHHHHHHHhCCC------CCCCcchHHHHHHHH
Q 023719 88 SRYSGLMCMALSSTIYFFMQVISDVFM-VQSIPLFETVFMRCTVTLILSYLWLRRSGQP------IFGPMHARNLLVLRA 160 (278)
Q Consensus 88 ~~~~g~l~~l~aa~~~~~~~v~~k~~~-~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~------~~~~~~~~~~~~l~g 160 (278)
+...|++++...-++=|+.+...+.+. ...++++++.+.-.++..+.-.......+.. ....++.++.+++..
T Consensus 169 ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s 248 (327)
T KOG1581|consen 169 NSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYS 248 (327)
T ss_pred CchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHH
Confidence 457799988888887777776665544 2578899999888888777665544433322 113456788899999
Q ss_pred HHHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHh
Q 023719 161 LVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI 223 (278)
Q Consensus 161 ~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li 223 (278)
.++.+++.+.|+-++.-.+-.-++++-+-=++..+++.+.++.+++..+|+|+.+.|.|+.+=
T Consensus 249 ~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~ 311 (327)
T KOG1581|consen 249 TCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLE 311 (327)
T ss_pred HhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHH
Confidence 999999999999999988888888899999999999999999999999999999999998763
No 66
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=97.29 E-value=0.004 Score=53.66 Aligned_cols=135 Identities=13% Similarity=0.114 Sum_probs=85.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHHHHHHh-CCCC--CC-CcchHHHHHHHHHH
Q 023719 88 SRYSGLMCMALSSTIYFFMQVISDVFMVQS-IPLFETVFMRCTVTLILSYLWLRRS-GQPI--FG-PMHARNLLVLRALV 162 (278)
Q Consensus 88 ~~~~g~l~~l~aa~~~~~~~v~~k~~~~~~-~~p~~~~~~R~~~a~l~l~~~~~~~-~~~~--~~-~~~~~~~~~l~g~~ 162 (278)
+...|..+.+.+.++-+...+..++..... .....-.+.-.+...+......... +... .. -.+.........+.
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGLL 161 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHHH
Confidence 345677777777777778888877754221 2211111111111111111111111 1100 00 01112234445566
Q ss_pred HHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHH
Q 023719 163 GFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLF 222 (278)
Q Consensus 163 ~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~l 222 (278)
..++..+..+.+++.+...-+....+.++++.+++.++++|+++..+++|+.+.+.|+.+
T Consensus 162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 777778888999999999999999999999999999999999999999999999998753
No 67
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=97.24 E-value=0.0039 Score=57.24 Aligned_cols=141 Identities=16% Similarity=0.087 Sum_probs=100.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHHH---HhCCCCC--CCcchHHHHHHH
Q 023719 88 SRYSGLMCMALSSTIYFFMQVISDVFMVQ---SIPLFETVFMRCTVTLILSYLWLR---RSGQPIF--GPMHARNLLVLR 159 (278)
Q Consensus 88 ~~~~g~l~~l~aa~~~~~~~v~~k~~~~~---~~~p~~~~~~R~~~a~l~l~~~~~---~~~~~~~--~~~~~~~~~~l~ 159 (278)
+...|.++++++++.+|.+.++.|.-..+ .++--....+-.++..++++|.++ +.+...+ +.......+++.
T Consensus 244 ~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~ 323 (416)
T KOG2765|consen 244 RPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFN 323 (416)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHh
Confidence 34789999999999999999999986532 244444444445556666664332 2222222 222223334444
Q ss_pred HHHH-HHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhcccc
Q 023719 160 ALVG-FLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRIL 228 (278)
Q Consensus 160 g~~~-~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~ 228 (278)
++.+ +++-++|.+|.-.+++-.+++-+.+.-..+++.-.++-+.+++...++|.+.+++|-+++..++.
T Consensus 324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence 4444 47889999999999999988888866666788888888899999999999999999988876654
No 68
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.08 E-value=0.051 Score=44.02 Aligned_cols=133 Identities=17% Similarity=0.197 Sum_probs=91.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHHHHHHHHHhC-CCCC-CCcchHHHHHHHHHHHHHH
Q 023719 90 YSGLMCMALSSTIYFFMQVISDVFMVQSI-PLFETVFMRCTVTLILSYLWLRRSG-QPIF-GPMHARNLLVLRALVGFLS 166 (278)
Q Consensus 90 ~~g~l~~l~aa~~~~~~~v~~k~~~~~~~-~p~~~~~~R~~~a~l~l~~~~~~~~-~~~~-~~~~~~~~~~l~g~~~~~~ 166 (278)
...++..+++..+-.....+.-.+. +.. +|+.-.++-+..+..++..+.+... .+.. ..++..++...+|+++.+.
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~-~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa~~ 82 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLA-RYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGAIF 82 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhhhh
Confidence 4567788888888888887776665 333 5888888888888777666554432 2222 1233455667788888777
Q ss_pred HHHHHHHhhcCchHHHHHH-HhhHHHHHHHHHHHHh----cCCCcHHHHHHHHHHHHHhHHh
Q 023719 167 LFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIIL----REKLKIAEIGGLALSFFGVLFI 223 (278)
Q Consensus 167 ~~~~~~al~~~~~~~a~~l-~~~~Pl~~~lla~l~l----~Er~~~~~~~gi~l~~~Gv~li 223 (278)
...-.....++.++....+ ..-.-+...++-.+=+ +.+++..+++|+++.++|++++
T Consensus 83 vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 83 VTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred hhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 6677777777777776554 4455555566555433 4889999999999999995444
No 69
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=0.00066 Score=61.05 Aligned_cols=120 Identities=22% Similarity=0.176 Sum_probs=88.3
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHH
Q 023719 86 NGSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFL 165 (278)
Q Consensus 86 ~~~~~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 165 (278)
+.+...|.++++.+.++.|...++-|... .|... -..+.++...+-.+. +....+-+...+
T Consensus 16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl-----------~r~~~-------~~~ra~~gg~~yl~~-~~Ww~G~ltm~v 76 (335)
T KOG2922|consen 16 SSDNIIGLVLAISSSIFIGSSFILKKKGL-----------KRAGA-------SGLRAGEGGYGYLKE-PLWWAGMLTMIV 76 (335)
T ss_pred ccCceeeeeehhhccEEEeeehhhhHHHH-----------HHHhh-------hcccccCCCcchhhh-HHHHHHHHHHHH
Confidence 35668899999999999999999988854 12111 001111111111111 111223344557
Q ss_pred HHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhh
Q 023719 166 SLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 224 (278)
Q Consensus 166 ~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~ 224 (278)
+-.+.|.|..+.|.+..+.+..+.-++.++++..++|||++....+|.+++++|-.+++
T Consensus 77 Gei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV 135 (335)
T KOG2922|consen 77 GEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIV 135 (335)
T ss_pred HhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEE
Confidence 77888899999999999999999999999999999999999999999999999998876
No 70
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=96.54 E-value=0.0065 Score=54.45 Aligned_cols=115 Identities=15% Similarity=-0.016 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccccccc
Q 023719 154 NLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQGR 233 (278)
Q Consensus 154 ~~~~l~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~~~ 233 (278)
+.+.-.++..+....+-.+++++++.+.=++.-+..++|+.+++.+|-=||+++.-..-+.++.+|+++....+.+..-.
T Consensus 85 r~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~ 164 (349)
T KOG1443|consen 85 RRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIE 164 (349)
T ss_pred HHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeeh
Confidence 34446677777777778899999999999999999999999999887779999999999999999999887655433221
Q ss_pred hhhHHH----HHHHHHHHHHHHhhhhh-ccCCchhHHHHH
Q 023719 234 EVSLQK----LFYYAKNGFHAYVNSQV-FSGETRFICAYV 268 (278)
Q Consensus 234 ~~~~g~----l~al~~A~~~i~~r~~~-~~~~~~~i~~y~ 268 (278)
+..+-. +.++-|+..+.+.|+-. .+.+|...+++.
T Consensus 165 Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l 204 (349)
T KOG1443|consen 165 GFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHL 204 (349)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHh
Confidence 222211 22333888888888765 556666655553
No 71
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.40 E-value=0.21 Score=44.96 Aligned_cols=156 Identities=14% Similarity=0.061 Sum_probs=104.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHH
Q 023719 119 PLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAAR 198 (278)
Q Consensus 119 ~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~ 198 (278)
++.-+.+...+.+.++-..++..+++. ...++.|+.....++.+.++..|-|.|++|++--.-.+-=..=-+=+++++.
T Consensus 50 ~~~fL~~~q~l~~~~~s~~~l~~~k~~-~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~ 128 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVSYAMLKWWKKE-LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGT 128 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhccccc-CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHH
Confidence 456677777777776665544433333 3344456677888899999999999999998876666655555555688999
Q ss_pred HHhcCCCcHHHHHHHHHHHHHhHHhhcc-cccc---cc-chhhHHHHHHHHH----HHHHHHhhhhhc--cCCchhHHHH
Q 023719 199 IILREKLKIAEIGGLALSFFGVLFIFRR-ILTT---QG-REVSLQKLFYYAK----NGFHAYVNSQVF--SGETRFICAY 267 (278)
Q Consensus 199 l~l~Er~~~~~~~gi~l~~~Gv~li~~~-~~~~---~~-~~~~~g~l~al~~----A~~~i~~r~~~~--~~~~~~i~~y 267 (278)
++.|.|.+..+.+...++-.||.+.... ..++ .+ .+...|.++...+ ++-.....++-+ +.++..+++|
T Consensus 129 Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~ 208 (327)
T KOG1581|consen 129 LVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFG 208 (327)
T ss_pred HHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHH
Confidence 9999999999999999999999775432 2221 11 1334454443331 223333333332 3567889999
Q ss_pred HHHHHHHh
Q 023719 268 VAIDTSKI 275 (278)
Q Consensus 268 ~~l~~~li 275 (278)
.+++.++.
T Consensus 209 vNLf~~i~ 216 (327)
T KOG1581|consen 209 VNLFSAIL 216 (327)
T ss_pred HHHHHHHH
Confidence 99888774
No 72
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=96.40 E-value=0.00027 Score=61.26 Aligned_cols=130 Identities=15% Similarity=0.137 Sum_probs=90.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHH
Q 023719 88 SRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSL 167 (278)
Q Consensus 88 ~~~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 167 (278)
+..+|+...+.+.+.+-.+.+..+....++.+.+.--..-++++++.+ ...++.+. ..+.-..-++-|+.-.++.
T Consensus 149 n~kkgi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali~---~~~~~~~~--~~K~t~~nii~G~~Wa~GN 223 (288)
T COG4975 149 NLKKGIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALIL---GFFKMEKR--FNKYTWLNIIPGLIWAIGN 223 (288)
T ss_pred hhhhheeeeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHHH---hhcccccc--hHHHHHHHHhhHHHHHhhH
Confidence 346788888888888888877777643244444333333333333322 22222121 2334455678899999999
Q ss_pred HHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHH----HHHHHHHhHH
Q 023719 168 FSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGG----LALSFFGVLF 222 (278)
Q Consensus 168 ~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~g----i~l~~~Gv~l 222 (278)
..+++|-+....+.+-.+..+..++..+-+.+++|||-+++++.. ++++.+|..+
T Consensus 224 l~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~ 282 (288)
T COG4975 224 LFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAIL 282 (288)
T ss_pred HHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhh
Confidence 999999999999999999999999999999999999999998654 4444445444
No 73
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.24 E-value=0.03 Score=48.60 Aligned_cols=134 Identities=13% Similarity=0.047 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHHHHHHhCCC------CCCCcchHHHHHHHHHHH
Q 023719 91 SGLMCMALSSTIYFFMQVISDVFMV-QSIPLFETVFMRCTVTLILSYLWLRRSGQP------IFGPMHARNLLVLRALVG 163 (278)
Q Consensus 91 ~g~l~~l~aa~~~~~~~v~~k~~~~-~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~------~~~~~~~~~~~~l~g~~~ 163 (278)
.|-++.+++-..=|+........-. ..-+.-++.+.-.+.+.+.+..-+...+.. ..+.+..++.+.+.++.+
T Consensus 172 ~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai~s 251 (337)
T KOG1580|consen 172 FGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAIAS 251 (337)
T ss_pred hHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4667777776666666665544321 122233444444455544443322222110 011234566778889999
Q ss_pred HHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhh
Q 023719 164 FLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 224 (278)
Q Consensus 164 ~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~ 224 (278)
.+++++.|.-+..-++-..+++..+--+|+.+.+.++++..++.+||+|.++.|.|..+=.
T Consensus 252 ~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 252 CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV 312 (337)
T ss_pred HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence 9999999999999888888999999999999999999999999999999999999886633
No 74
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=95.94 E-value=0.0032 Score=54.76 Aligned_cols=131 Identities=11% Similarity=0.034 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 023719 92 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFV 171 (278)
Q Consensus 92 g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 171 (278)
+++.+++=++.||....+... -+-.|.+-..--.+-|.++.+.+++.. .+..+.+.+...++.|++-.+++...|
T Consensus 3 ~~liaL~P~l~WGsip~v~~k---~GG~p~qQ~lGtT~GALifaiiv~~~~--~p~~T~~~~iv~~isG~~Ws~GQ~~Qf 77 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANK---FGGKPYQQTLGTTLGALIFAIIVFLFV--SPELTLTIFIVGFISGAFWSFGQANQF 77 (288)
T ss_pred hHHHHHHHHHHhcccceeeee---cCCChhHhhhhccHHHHHHHHHHheee--cCccchhhHHHHHHhhhHhhhhhhhhh
Confidence 678889999999998877655 245666666555555555544444432 222344456667788888889999999
Q ss_pred HHhhcCchHHHHHHHh-hHHHHHHHHHHHHhcCCCcHHHH----HHHHHHHHHhHHhhccc
Q 023719 172 YSIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIAEI----GGLALSFFGVLFIFRRI 227 (278)
Q Consensus 172 ~al~~~~~~~a~~l~~-~~Pl~~~lla~l~l~Er~~~~~~----~gi~l~~~Gv~li~~~~ 227 (278)
.|+++..+++|..+.. +.=+-+.+++.+.|||..+..++ ++++++++|+.+-...+
T Consensus 78 ka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~ 138 (288)
T COG4975 78 KAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQD 138 (288)
T ss_pred hheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeec
Confidence 9999999999998865 77788899999999999988764 46677777877765443
No 75
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.86 E-value=0.095 Score=47.34 Aligned_cols=135 Identities=12% Similarity=0.157 Sum_probs=104.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHHHHHHhCC--------CCCCCcchHHHHHHHH
Q 023719 90 YSGLMCMALSSTIYFFMQVISDVFMV-QSIPLFETVFMRCTVTLILSYLWLRRSGQ--------PIFGPMHARNLLVLRA 160 (278)
Q Consensus 90 ~~g~l~~l~aa~~~~~~~v~~k~~~~-~~~~p~~~~~~R~~~a~l~l~~~~~~~~~--------~~~~~~~~~~~~~l~g 160 (278)
..|+.+++...+.-+...+..|.-.. .+.+-+.++++-.+.+.+.+.......+. ..+.....+..+.+.+
T Consensus 156 ~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lSc 235 (314)
T KOG1444|consen 156 LRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSC 235 (314)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHH
Confidence 45899999999999999999998642 46677888899888888877765543332 1122334566778888
Q ss_pred HHHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhh
Q 023719 161 LVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 224 (278)
Q Consensus 161 ~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~ 224 (278)
+++++-.++-++..+..++..-+++...+=..+.+...++.+++.++...+|+.++++|-++-.
T Consensus 236 v~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~ 299 (314)
T KOG1444|consen 236 VMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYS 299 (314)
T ss_pred HHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHh
Confidence 9998888888899998888887777766666677777777789999999999999999887654
No 76
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=95.72 E-value=0.058 Score=46.83 Aligned_cols=153 Identities=11% Similarity=0.130 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHH
Q 023719 121 FETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARII 200 (278)
Q Consensus 121 ~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~ 200 (278)
..++|+++..-.++.=.+...+++......+ -+.-....+...+++..-..|+|+.|--...+--+.-|+=+++++.++
T Consensus 54 laLVf~qC~~N~vfAkvl~~ir~~~~~D~t~-~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~ 132 (337)
T KOG1580|consen 54 LALVFFQCTANTVFAKVLFLIRKKTEIDNTP-TKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLF 132 (337)
T ss_pred HHHHHHHHHHHHHHHHhheeecccccccCCc-chHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhh
Confidence 5566666666555543333323222111111 222333444444566667789999999888888889999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHhHHhhcccccccc---chhhHHHHHHHH----HHHHHHHhhhhhcc--CCchhHHHHHHHH
Q 023719 201 LREKLKIAEIGGLALSFFGVLFIFRRILTTQG---REVSLQKLFYYA----KNGFHAYVNSQVFS--GETRFICAYVAID 271 (278)
Q Consensus 201 l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~~---~~~~~g~l~al~----~A~~~i~~r~~~~~--~~~~~i~~y~~l~ 271 (278)
.|.+-++++..+.+++.+||++.+.......+ ...++|-++-+. =+.......|+... .....+++|.++.
T Consensus 133 ~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~Nlw 212 (337)
T KOG1580|consen 133 AHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLW 212 (337)
T ss_pred hcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHH
Confidence 99999999999999999999998765332211 133445333222 12222333333222 2334567776666
Q ss_pred HHH
Q 023719 272 TSK 274 (278)
Q Consensus 272 ~~l 274 (278)
+++
T Consensus 213 StL 215 (337)
T KOG1580|consen 213 STL 215 (337)
T ss_pred HHH
Confidence 655
No 77
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.94 E-value=0.034 Score=49.28 Aligned_cols=157 Identities=13% Similarity=0.069 Sum_probs=96.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCCC----CCCCcc----hHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhhHH
Q 023719 119 PLFETVFMRCTVTLILSYLWLRRSGQP----IFGPMH----ARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAP 190 (278)
Q Consensus 119 ~p~~~~~~R~~~a~l~l~~~~~~~~~~----~~~~~~----~~~~~~l~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~P 190 (278)
-|.-+.+.++++...+...+-+...+- .++..+ .-+.++=..+.-..+...-.+.+++.+++-=-+-..+..
T Consensus 60 ~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLtt 139 (347)
T KOG1442|consen 60 APLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTT 139 (347)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchhh
Confidence 467788888888776665544322111 111111 011111111111222233445667777665555567788
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccccc---cchhhHHHHHHHHHHHHHHHhhhhhcc--CCchhHH
Q 023719 191 IMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQ---GREVSLQKLFYYAKNGFHAYVNSQVFS--GETRFIC 265 (278)
Q Consensus 191 l~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~---~~~~~~g~l~al~~A~~~i~~r~~~~~--~~~~~i~ 265 (278)
+|++++.++++|+|-+.....+..++++|-.+=+..+.... ..+..+|.++.++-|+..+++||.... +......
T Consensus 140 vFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt 219 (347)
T KOG1442|consen 140 VFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLT 219 (347)
T ss_pred hHHHHhHHhhcccccccccceeehhheehheeccccccccCccchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhH
Confidence 99999999999999999999998888888766443332111 114556777777788999999987544 3455788
Q ss_pred HHHHHHHHHh
Q 023719 266 AYVAIDTSKI 275 (278)
Q Consensus 266 ~y~~l~~~li 275 (278)
+|.++.+.++
T Consensus 220 ~ynnv~a~lL 229 (347)
T KOG1442|consen 220 AYNNVNALLL 229 (347)
T ss_pred HHHHHHHHHH
Confidence 8888877653
No 78
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=94.64 E-value=0.31 Score=42.12 Aligned_cols=133 Identities=9% Similarity=0.069 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCC------CCcchHHHHHHHHHHH
Q 023719 91 SGLMCMALSSTIYFFMQVISDVFMV-QSIPLFETVFMRCTVTLILSYLWLRRSGQPIF------GPMHARNLLVLRALVG 163 (278)
Q Consensus 91 ~g~l~~l~aa~~~~~~~v~~k~~~~-~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~------~~~~~~~~~~l~g~~~ 163 (278)
.|++++..-++.-+..-...|.-.. ...--++.+++-.+++.++++.+-.....+.. .+.....++++.|++.
T Consensus 155 ~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~s 234 (309)
T COG5070 155 PGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCS 234 (309)
T ss_pred CceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHH
Confidence 4777777777777766666666421 45566889999999999888776543322211 1233455678888888
Q ss_pred HHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHh
Q 023719 164 FLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI 223 (278)
Q Consensus 164 ~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li 223 (278)
+.-.+|--|.++.++...-+.+..++-.-.++-+.++++|+.+...+..+.++++..++-
T Consensus 235 vgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iY 294 (309)
T COG5070 235 VGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIY 294 (309)
T ss_pred hhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 887888888999999988899999998889999999999999999999999888765543
No 79
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=94.20 E-value=3.1 Score=38.24 Aligned_cols=137 Identities=12% Similarity=0.091 Sum_probs=92.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHH-hCCC------CCCCcchHHHHHHHH
Q 023719 88 SRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRR-SGQP------IFGPMHARNLLVLRA 160 (278)
Q Consensus 88 ~~~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~-~~~~------~~~~~~~~~~~~l~g 160 (278)
+-..|+++..+++++-+...+-.|.. ++.+ +|..+.-..+-..++.|+... -.-+ ...+.+.+....+.|
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kkv--k~Ws-WEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G 80 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKKV--KGWS-WESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFG 80 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhhc--CCcc-HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHH
Confidence 34679999999999999999999985 3443 344333333333333333221 1001 112334566677888
Q ss_pred HHHHHHHHHHHHHhhcCchHHHHHH-HhhHHHHHHHHHHHHhc-------CCCcHHHHHHHHHHHHHhHHhhccc
Q 023719 161 LVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILR-------EKLKIAEIGGLALSFFGVLFIFRRI 227 (278)
Q Consensus 161 ~~~~~~~~~~~~al~~~~~~~a~~l-~~~~Pl~~~lla~l~l~-------Er~~~~~~~gi~l~~~Gv~li~~~~ 227 (278)
++-.++...|=.+++|+..+...-+ ..+.-++..++-.++.+ .+-...-++|++++++|+.++-..+
T Consensus 81 ~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG 155 (344)
T PF06379_consen 81 VLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAG 155 (344)
T ss_pred HHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHH
Confidence 8888999999999999998886544 45777777777666543 3445578899999999999987443
No 80
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.06 E-value=0.64 Score=41.39 Aligned_cols=138 Identities=12% Similarity=0.151 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCC-------CCCcchHHHHHHHHH
Q 023719 90 YSGLMCMALSSTIYFFMQVISDVFM-VQSIPLFETVFMRCTVTLILSYLWLRRSGQPI-------FGPMHARNLLVLRAL 161 (278)
Q Consensus 90 ~~g~l~~l~aa~~~~~~~v~~k~~~-~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~-------~~~~~~~~~~~l~g~ 161 (278)
..|+.+.-.+-++=+..+.+..... ...-+..++++.-..++++.++..+...+... ..+.+.....++-.+
T Consensus 189 ~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~ 268 (367)
T KOG1582|consen 189 LIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSL 268 (367)
T ss_pred eeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHH
Confidence 3455555444444444444333322 13455677888877777777666554443321 123344556677777
Q ss_pred HHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccc
Q 023719 162 VGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI 227 (278)
Q Consensus 162 ~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~ 227 (278)
.+.++......-++.-.+..++.+.-.--.++.++++++|..+++-.-..+..+++.|+++=+.+.
T Consensus 269 ~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 269 AGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 777777777777788888888888888889999999999999999999999999999999977665
No 81
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=93.46 E-value=3.7 Score=36.03 Aligned_cols=125 Identities=10% Similarity=0.131 Sum_probs=78.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHHHHHHh-CCC-----CCCCcchHHHHHHHHH
Q 023719 89 RYSGLMCMALSSTIYFFMQVISDVFMVQ-SIPLFETVFMRCTVTLILSYLWLRRS-GQP-----IFGPMHARNLLVLRAL 161 (278)
Q Consensus 89 ~~~g~l~~l~aa~~~~~~~v~~k~~~~~-~~~p~~~~~~R~~~a~l~l~~~~~~~-~~~-----~~~~~~~~~~~~l~g~ 161 (278)
...|++++++++++-|+.++.......+ +.+.+.-...-.+.+.++.+.....+ +.. .+..... ......+
T Consensus 112 ~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~--~~~~~i~ 189 (244)
T PF04142_consen 112 PLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSW--WVWIVIF 189 (244)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcch--HHHHHHH
Confidence 4679999999999999999999776533 33333333333444444443333222 211 1111111 1222333
Q ss_pred HHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 023719 162 VGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLAL 215 (278)
Q Consensus 162 ~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l 215 (278)
...++-.+.-.-++|.+.-.=..-....-+++.++++++++.+++....+|..+
T Consensus 190 ~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 190 LQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred HHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 444444555566788777776777778889999999999999999988887653
No 82
>PRK02237 hypothetical protein; Provisional
Probab=93.24 E-value=1.7 Score=33.08 Aligned_cols=37 Identities=11% Similarity=0.031 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhh
Q 023719 188 TAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 224 (278)
Q Consensus 188 ~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~ 224 (278)
.+-+...+..+.+-++||++.+++|..++++|+.+++
T Consensus 68 vyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~ 104 (109)
T PRK02237 68 VYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIM 104 (109)
T ss_pred HHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhe
Confidence 6666777889999999999999999999999998874
No 83
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=93.17 E-value=2.4 Score=38.46 Aligned_cols=134 Identities=17% Similarity=0.184 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHHH-HhCCCC---------CCCcchHHH
Q 023719 90 YSGLMCMALSSTIYFFMQVISDVFMVQ----SIPLFETVFMRCTVTLILSYLWLR-RSGQPI---------FGPMHARNL 155 (278)
Q Consensus 90 ~~g~l~~l~aa~~~~~~~v~~k~~~~~----~~~p~~~~~~R~~~a~l~l~~~~~-~~~~~~---------~~~~~~~~~ 155 (278)
..|.++...+.++-|+-+.+.+....+ .-+|++..+--.-...+.+++..+ .++... +.+...++.
T Consensus 163 i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv 242 (349)
T KOG1443|consen 163 IEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRV 242 (349)
T ss_pred ehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHH
Confidence 458888888888877777777765531 124555554333333333333322 332211 111112222
Q ss_pred ---HHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHh
Q 023719 156 ---LVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI 223 (278)
Q Consensus 156 ---~~l~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li 223 (278)
+.+.|...+..-.+-|.-+..++.-..++..-.-=+.+.+++..+.+++++...|.|..++..|+.+=
T Consensus 243 ~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 243 IGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 23333333333334455566666665565555666788999999999999999999999999999876
No 84
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=92.78 E-value=0.45 Score=42.06 Aligned_cols=126 Identities=12% Similarity=0.052 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 023719 92 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFV 171 (278)
Q Consensus 92 g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 171 (278)
|+++++++++++|.+++-+|.. +..|++-.-++.+....+.-+.+...++.+ +...+.+++|.+-..+..+-.
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~--~~gDg~~fQw~~~~~i~~~g~~v~~~~~~p-----~f~p~amlgG~lW~~gN~~~v 73 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKF--DTGDGFFFQWVMCSGIFLVGLVVNLILGFP-----PFYPWAMLGGALWATGNILVV 73 (254)
T ss_pred CchhHHHHHHHhcccceeeEec--cCCCcHHHHHHHHHHHHHHHHHHHHhcCCC-----cceeHHHhhhhhhhcCceeeh
Confidence 5678999999999999999985 566776666665554444433333333332 245567889999999999999
Q ss_pred HHhhcCchHHHHHHHhh-HHHHHHHHHHH-HhcC---CC--cHHHHHHHHHHHHHhHHhh
Q 023719 172 YSIQRLPLSQATVLSFT-APIMASIAARI-ILRE---KL--KIAEIGGLALSFFGVLFIF 224 (278)
Q Consensus 172 ~al~~~~~~~a~~l~~~-~Pl~~~lla~l-~l~E---r~--~~~~~~gi~l~~~Gv~li~ 224 (278)
-.++.+..+.+..+-.+ +-+..=..+++ +|++ .+ .....+|++++++|..+..
T Consensus 74 pii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~ 133 (254)
T PF07857_consen 74 PIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFS 133 (254)
T ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHhee
Confidence 99999999999988775 44444444444 4443 22 3457888888888887654
No 85
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=91.96 E-value=1.3 Score=33.55 Aligned_cols=111 Identities=13% Similarity=0.075 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCC------HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHH
Q 023719 95 CMALSSTIYFFMQVISDVFMVQSIP------LFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLF 168 (278)
Q Consensus 95 ~~l~aa~~~~~~~v~~k~~~~~~~~------p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 168 (278)
-++..++.||..+.+.|... .+.+ .-...++|-.....+ .|.+.+ =-+++-.+..
T Consensus 7 ~lvaVgllWG~Tnplirrgs-~g~~~v~~~~~k~~~~lqe~~tl~l-----------------~w~Y~i-PFllNqcgSa 67 (125)
T KOG4831|consen 7 KLVAVGLLWGATNPLIRRGS-LGWDKVKSSSRKIMIALQEMKTLFL-----------------NWEYLI-PFLLNQCGSA 67 (125)
T ss_pred HHHHHHHHHccccHHHHHHH-hhHhhccCchHHHHHHHHHHHHHHH-----------------hHHHHH-HHHHHHhhHH
Confidence 46677889999999999965 2221 122222221111000 111111 1233446677
Q ss_pred HHHHHhhcCchHHHHHHHh-hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhh
Q 023719 169 SFVYSIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 224 (278)
Q Consensus 169 ~~~~al~~~~~~~a~~l~~-~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~ 224 (278)
+||.-+++.|.+.|..+.+ +.-.|+.+.+..+=.|...++.++|..++.+|+.+.+
T Consensus 68 ly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 68 LYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 8999999999999987755 6778888888765456666778999999999998754
No 86
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=90.74 E-value=1.5 Score=33.33 Aligned_cols=52 Identities=12% Similarity=0.068 Sum_probs=39.3
Q ss_pred hhcCchHHHHHH-HhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhc
Q 023719 174 IQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 225 (278)
Q Consensus 174 l~~~~~~~a~~l-~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~ 225 (278)
++-.+.+++-.- ...+-+...+..+.+-|+||++.+++|..++++|+.+++.
T Consensus 51 l~p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 51 LQPAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILF 103 (107)
T ss_pred cCcccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEe
Confidence 333444444222 3366777888899999999999999999999999998764
No 87
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.18 E-value=0.32 Score=43.26 Aligned_cols=134 Identities=13% Similarity=0.104 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHHHHHHhCC-------CCCCCcchHHHHHHHHH
Q 023719 90 YSGLMCMALSSTIYFFMQVISDVFMVQ-SIPLFETVFMRCTVTLILSYLWLRRSGQ-------PIFGPMHARNLLVLRAL 161 (278)
Q Consensus 90 ~~g~l~~l~aa~~~~~~~v~~k~~~~~-~~~p~~~~~~R~~~a~l~l~~~~~~~~~-------~~~~~~~~~~~~~l~g~ 161 (278)
..|+++.+.+.+.-++..+..|..... +-.-+.+.++-.+.+.++.++++...+. +.....+.|..+.+.|+
T Consensus 184 ~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsgl 263 (347)
T KOG1442|consen 184 WIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGL 263 (347)
T ss_pred hhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHH
Confidence 569999999999999999999975411 1224677788888888888887765442 12334456777778888
Q ss_pred HHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHh
Q 023719 162 VGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI 223 (278)
Q Consensus 162 ~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li 223 (278)
+++...+.-++=++.+++-.=.+-...-...-.+++..+++|..+...|-+-++++.|-.+-
T Consensus 264 fgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~Y 325 (347)
T KOG1442|consen 264 FGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAY 325 (347)
T ss_pred HHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHH
Confidence 88754443333344443322111111122233577888999999998888877776666543
No 88
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=90.16 E-value=6.1 Score=29.98 Aligned_cols=53 Identities=21% Similarity=0.205 Sum_probs=40.0
Q ss_pred HHhhcCchHHHHHHHh-hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhh
Q 023719 172 YSIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 224 (278)
Q Consensus 172 ~al~~~~~~~a~~l~~-~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~ 224 (278)
.|.+..+.++-.++.- +.-..-+.++.+++||++++..+.|.++...++.++.
T Consensus 54 iG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fiF 107 (108)
T PF04342_consen 54 IGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFIF 107 (108)
T ss_pred hhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhheee
Confidence 4555567777777755 3344456788899999999999999999988887664
No 89
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=86.94 E-value=11 Score=28.45 Aligned_cols=39 Identities=13% Similarity=-0.009 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhcc
Q 023719 188 TAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR 226 (278)
Q Consensus 188 ~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~ 226 (278)
.+-+...+..++.-|.++++++|.|..++++|+.++...
T Consensus 67 vyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 67 VYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred hHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence 555666777888889999999999999999999887643
No 90
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=85.85 E-value=1 Score=39.82 Aligned_cols=134 Identities=13% Similarity=0.065 Sum_probs=86.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHH-HHH-HHHHH
Q 023719 87 GSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLL-VLR-ALVGF 164 (278)
Q Consensus 87 ~~~~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~-~l~-g~~~~ 164 (278)
.|..+|-+++++++-+++.+++.-.+.. ...+-.++...-.+++.++-.+-....+.....-..++... .++ .+..+
T Consensus 162 snp~~GD~lvi~GATlYaVSNv~EEflv-kn~d~~elm~~lgLfGaIIsaIQ~i~~~~~~~tl~w~~~i~~yl~f~L~MF 240 (336)
T KOG2766|consen 162 SNPVKGDFLVIAGATLYAVSNVSEEFLV-KNADRVELMGFLGLFGAIISAIQFIFERHHVSTLHWDSAIFLYLRFALTMF 240 (336)
T ss_pred CCCccCcEEEEecceeeeeccccHHHHH-hcCcHHHHHHHHHHHHHHHHHHHHhhhccceeeEeehHHHHHHHHHHHHHH
Confidence 5567899999999999999999988876 88899999888888888877765444433322111112222 222 11111
Q ss_pred HHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHh
Q 023719 165 LSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI 223 (278)
Q Consensus 165 ~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li 223 (278)
.-+.+.-.-++..++..-.+-.-+.-+|..++ ..|+-+.++.-.++...+..|.++-
T Consensus 241 llYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiY 297 (336)
T KOG2766|consen 241 LLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIY 297 (336)
T ss_pred HHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEe
Confidence 22222223344444444444445666777666 5677779999999999999998665
No 91
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=79.02 E-value=17 Score=31.73 Aligned_cols=106 Identities=8% Similarity=-0.005 Sum_probs=72.5
Q ss_pred HHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhcccccc-------ccchhhHHHH
Q 023719 168 FSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTT-------QGREVSLQKL 240 (278)
Q Consensus 168 ~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~-------~~~~~~~g~l 240 (278)
+.--.+++++++..=++.-++.-+.++....++||.|++..+....++..+.-+.-.+.+... .+.+..+-..
T Consensus 83 yt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~~ 162 (309)
T COG5070 83 YTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMFT 162 (309)
T ss_pred HhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEEeh
Confidence 334468999999999999999999999999999999999999888777776665555443311 0111111122
Q ss_pred HHHHHHHHHHHhhhhhcc--CCchhHHHHHHHHHH
Q 023719 241 FYYAKNGFHAYVNSQVFS--GETRFICAYVAIDTS 273 (278)
Q Consensus 241 ~al~~A~~~i~~r~~~~~--~~~~~i~~y~~l~~~ 273 (278)
-++..+.+.+..|+..+- .....-++|..+.+.
T Consensus 163 NclssaafVL~mrkri~ltNf~d~dtmfYnNllsl 197 (309)
T COG5070 163 NCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSL 197 (309)
T ss_pred hhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHH
Confidence 345567777777765433 234567888877654
No 92
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=76.17 E-value=66 Score=29.79 Aligned_cols=132 Identities=14% Similarity=0.181 Sum_probs=76.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHH----HHHHHHHHHHHH-hCCCC-----CCCcchHHHHH
Q 023719 88 SRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCT----VTLILSYLWLRR-SGQPI-----FGPMHARNLLV 157 (278)
Q Consensus 88 ~~~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~----~a~l~l~~~~~~-~~~~~-----~~~~~~~~~~~ 157 (278)
+...|+.+.+.+++.-|+.++....+..+.- ...++|.+ ++.++.+.-.+. .+.+. +.... +...
T Consensus 180 n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~---~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s--~~vw 254 (345)
T KOG2234|consen 180 NPFLGLVAVLVACFLSGFAGVYFEKILKGSN---VSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYS--SIVW 254 (345)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHHHHHHHHHhhccccccccCCcccccc--HHHH
Confidence 4577999999999999999998877653222 33334433 233333322222 21111 11111 1112
Q ss_pred HHHHHHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhh
Q 023719 158 LRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 224 (278)
Q Consensus 158 l~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~ 224 (278)
+.-+....+-.+--.-++|..--.=..-..+.-+++.+.++.+++-+++..-.+|+.+.+..+.+-.
T Consensus 255 ~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~ 321 (345)
T KOG2234|consen 255 LVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYS 321 (345)
T ss_pred HHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhh
Confidence 2222222222222233444443333444456778889999999999999999999999999988776
No 93
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=75.83 E-value=48 Score=28.09 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023719 93 LMCMALSSTIYFFMQVISDV 112 (278)
Q Consensus 93 ~l~~l~aa~~~~~~~v~~k~ 112 (278)
+++..+-+++.|+...+.+.
T Consensus 87 L~~~~if~~~~gi~~~f~~~ 106 (206)
T PF06570_consen 87 LLFFGIFSLLFGIMGFFSPK 106 (206)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 33444445556666655553
No 94
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=73.37 E-value=57 Score=27.73 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=28.6
Q ss_pred HhhHHHHHHHHHHHHhcCCCc-------------HHHHHHHHHHHHHhHHhh
Q 023719 186 SFTAPIMASIAARIILREKLK-------------IAEIGGLALSFFGVLFIF 224 (278)
Q Consensus 186 ~~~~Pl~~~lla~l~l~Er~~-------------~~~~~gi~l~~~Gv~li~ 224 (278)
....|+...++.+.+.+||.. .+++.+.++.++|++++.
T Consensus 159 i~~~~~~~pll~~~~~~~r~~~~l~r~~~wl~~~~~~i~~~i~~i~G~~l~~ 210 (214)
T PF11139_consen 159 IASLPALLPLLAYLVAPERAEPWLERLRSWLRRHSRQILAVILLIVGALLLG 210 (214)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 457788888899988888763 234567777777877765
No 95
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=71.32 E-value=42 Score=30.23 Aligned_cols=133 Identities=14% Similarity=0.151 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHHHHH---------HhCCC----CCCCcchHHH
Q 023719 90 YSGLMCMALSSTIYFFMQVISDVFMV-QSIPLFETVFMRCTVTLILSYLWLR---------RSGQP----IFGPMHARNL 155 (278)
Q Consensus 90 ~~g~l~~l~aa~~~~~~~v~~k~~~~-~~~~p~~~~~~R~~~a~l~l~~~~~---------~~~~~----~~~~~~~~~~ 155 (278)
..|+.+...+-+.-+.+++....... .+-++=|.+|+--.+..++.+.... +...+ ..... .+.
T Consensus 163 ~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~--vP~ 240 (330)
T KOG1583|consen 163 LIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFK--VPS 240 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCcc--ccH
Confidence 35777777777777777776655432 4667888888887777665543321 01110 11000 122
Q ss_pred HHHHHHHHHHHHHHHHHHhh----cCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhh
Q 023719 156 LVLRALVGFLSLFSFVYSIQ----RLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 224 (278)
Q Consensus 156 ~~l~g~~~~~~~~~~~~al~----~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~ 224 (278)
....-+++.+.++.-..+.. .+++-++++...+-=.+..+++.+.|+...+++.|+|..+.|+|.++-.
T Consensus 241 ~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 241 MWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA 313 (330)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 22233334444333222222 2333344556667778899999999999999999999999999998765
No 96
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=67.79 E-value=20 Score=32.25 Aligned_cols=62 Identities=11% Similarity=0.259 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhhc-CchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhh
Q 023719 163 GFLSLFSFVYSIQR-LPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 224 (278)
Q Consensus 163 ~~~~~~~~~~al~~-~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~ 224 (278)
.+....+..+++++ +|.-.=.++..-.++-++.++|+++|.|-+.+|+..+++..+|+++-.
T Consensus 74 FF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcT 136 (330)
T KOG1583|consen 74 FFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICT 136 (330)
T ss_pred eeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEE
Confidence 33445566667766 444444556667888999999999999999999999999999998764
No 97
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=66.33 E-value=25 Score=29.85 Aligned_cols=42 Identities=12% Similarity=0.160 Sum_probs=33.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHH
Q 023719 181 QATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLF 222 (278)
Q Consensus 181 ~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~l 222 (278)
......+..++++++..+.+.++|.+..++++.++...|++.
T Consensus 6 a~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~ 47 (222)
T TIGR00803 6 IHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLV 47 (222)
T ss_pred chHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHH
Confidence 345556678888888888888888888888888888888764
No 98
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=65.87 E-value=42 Score=29.72 Aligned_cols=43 Identities=14% Similarity=0.077 Sum_probs=32.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhcC-------CCHHHHHHHHHHHH
Q 023719 89 RYSGLMCMALSSTIYFFMQVISDVFMVQS-------IPLFETVFMRCTVT 131 (278)
Q Consensus 89 ~~~g~l~~l~aa~~~~~~~v~~k~~~~~~-------~~p~~~~~~R~~~a 131 (278)
|..|..+++++++++|.+.+-+++..+++ -++++.+|-.+...
T Consensus 181 RivG~~LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~GI 230 (254)
T PF07857_consen 181 RIVGIILAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFSGI 230 (254)
T ss_pred hhHhHHHHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHHHHhhH
Confidence 47799999999999999999999986332 24565566555433
No 99
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.71 E-value=64 Score=24.28 Aligned_cols=53 Identities=21% Similarity=0.177 Sum_probs=39.0
Q ss_pred HhhcCchHHHHHHHh-hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhc
Q 023719 173 SIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 225 (278)
Q Consensus 173 al~~~~~~~a~~l~~-~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~ 225 (278)
+-+..+++.--.+.- +.-.+-+.++.+.+||++++..+.|..++..|+.++++
T Consensus 62 G~~v~s~~QLK~mQEVItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr 115 (116)
T COG3169 62 GHQVYSAAQLKTMQEVITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR 115 (116)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence 344455555555544 33334466889999999999999999999999998864
No 100
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=60.73 E-value=1.3e+02 Score=27.28 Aligned_cols=136 Identities=15% Similarity=0.206 Sum_probs=83.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHH-HhhcCCCHHHHHHHHHHHHHHHHHHHHH-----HhCCCC----CCCcchHHHH-
Q 023719 88 SRYSGLMCMALSSTIYFFMQVISDV-FMVQSIPLFETVFMRCTVTLILSYLWLR-----RSGQPI----FGPMHARNLL- 156 (278)
Q Consensus 88 ~~~~g~l~~l~aa~~~~~~~v~~k~-~~~~~~~p~~~~~~R~~~a~l~l~~~~~-----~~~~~~----~~~~~~~~~~- 156 (278)
+...|.++.+++-++-++..+.-.+ +...+++|.+.+.+..+++..++..+.. ..++.. .....+|...
T Consensus 173 ~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~ 252 (372)
T KOG3912|consen 173 SIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAF 252 (372)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHH
Confidence 4456999999999999999988644 3347899999999999888654433322 112111 1111222211
Q ss_pred --------HHHHHHHHHHHHHH--HHHh---hcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHh
Q 023719 157 --------VLRALVGFLSLFSF--VYSI---QRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI 223 (278)
Q Consensus 157 --------~l~g~~~~~~~~~~--~~al---~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li 223 (278)
+...+.+......| |.++ ++.++++=.++-..-..+.=+++.....|+....++.|.++-..|+++-
T Consensus 253 ~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY 332 (372)
T KOG3912|consen 253 AALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILY 332 (372)
T ss_pred HHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222222222111 2222 3355555566656555555566667788999999999999999998764
No 101
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=60.40 E-value=33 Score=31.04 Aligned_cols=60 Identities=15% Similarity=0.331 Sum_probs=42.5
Q ss_pred HHHHHHHhhcCchHHHHHHHh-hHHHHHHHHHHHHhcC--CCcHHH----HHHHHHHHHHhHHhhcc
Q 023719 167 LFSFVYSIQRLPLSQATVLSF-TAPIMASIAARIILRE--KLKIAE----IGGLALSFFGVLFIFRR 226 (278)
Q Consensus 167 ~~~~~~al~~~~~~~a~~l~~-~~Pl~~~lla~l~l~E--r~~~~~----~~gi~l~~~Gv~li~~~ 226 (278)
..+...|+++-++.....+.+ ..-.++.+-+.+++|| +.+..+ ..|..+.+.||.++...
T Consensus 227 ~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~ 293 (300)
T PF05653_consen 227 LYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSS 293 (300)
T ss_pred HHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeecc
Confidence 344556999999998887766 6677777888888885 445544 34566677888777643
No 102
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=58.70 E-value=23 Score=28.56 Aligned_cols=45 Identities=20% Similarity=0.346 Sum_probs=28.2
Q ss_pred hhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 023719 174 IQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFG 219 (278)
Q Consensus 174 l~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~G 219 (278)
+.--+.-.++++.|+.|+++.+++.++ -+++...+.+.++.+++|
T Consensus 69 i~EkslL~sA~LvYi~PL~~l~v~~~L-a~~L~~~e~~~~~~~~lg 113 (150)
T COG3086 69 IEEKSLLKSALLVYIFPLVGLFLGAIL-AQYLFFSELIVIFGAFLG 113 (150)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHH
Confidence 444556678899999999999988765 334444444444433333
No 103
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=58.63 E-value=1e+02 Score=25.41 Aligned_cols=66 Identities=8% Similarity=-0.007 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHH-------HHHHhHHhhccccccccchhhHHHHHHHHHHHHHHHhhhhh
Q 023719 191 IMASIAARIILREKLKIAEIGGLAL-------SFFGVLFIFRRILTTQGREVSLQKLFYYAKNGFHAYVNSQV 256 (278)
Q Consensus 191 l~~~lla~l~l~Er~~~~~~~gi~l-------~~~Gv~li~~~~~~~~~~~~~~g~l~al~~A~~~i~~r~~~ 256 (278)
+++-+.....-|..|+.++.+|+.+ +..|+.++.....-+.-.....|..+++.++..+++.-.++
T Consensus 83 v~VQf~Em~v~KtsP~LYr~LGIfLPLITTNCaVLgvaLln~~~~~~f~qsv~~gf~a~lGfslvmvlfA~iR 155 (193)
T COG4657 83 VVVQFTEMVVRKTSPTLYRLLGIFLPLITTNCAVLGVALLNINEGHNFLQSVVYGFGAALGFSLVMVLFAAIR 155 (193)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHhhhhHhhchHHHHHHHHHhhhhhhHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence 3344455667788899999999875 67788887644322222223456666666776666655443
No 104
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=57.91 E-value=30 Score=23.26 Aligned_cols=20 Identities=20% Similarity=0.517 Sum_probs=16.2
Q ss_pred HHHHHHHHHhHHhhcccccc
Q 023719 211 GGLALSFFGVLFIFRRILTT 230 (278)
Q Consensus 211 ~gi~l~~~Gv~li~~~~~~~ 230 (278)
.|++...+|++++..|+...
T Consensus 2 ~Gil~iv~Gi~~l~~p~~~~ 21 (72)
T PF03729_consen 2 SGILFIVLGILLLFNPDASL 21 (72)
T ss_pred HHHHHHHHHHHHHHhHHHHH
Confidence 57888999999999887544
No 105
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=56.46 E-value=82 Score=27.01 Aligned_cols=140 Identities=11% Similarity=0.073 Sum_probs=71.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH------HHHHHhCCCCCCC--cchHHHHHHH
Q 023719 88 SRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSY------LWLRRSGQPIFGP--MHARNLLVLR 159 (278)
Q Consensus 88 ~~~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~------~~~~~~~~~~~~~--~~~~~~~~l~ 159 (278)
+...|+.+++.+++.-+++.+..|... ...+--+..-+-...+++=+. .++...+...+.. ...|.-+...
T Consensus 132 ~e~iGi~~AV~SA~~aAlYKV~FK~~i-GnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA~~PWG~l~G~ 210 (290)
T KOG4314|consen 132 DEIIGIACAVGSAFMAALYKVLFKMFI-GNANFGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSFAAAPWGCLCGA 210 (290)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHh-ccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHhhCCchhhhhH
Confidence 346799999999999999999999875 444444444333333332111 1111222111110 0112222211
Q ss_pred HHHHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhcccc
Q 023719 160 ALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRIL 228 (278)
Q Consensus 160 g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~ 228 (278)
+.+......+...++..+.+-.-++-+-+.-.--+.+-.++-.-..+.....+..++.+|-++++.|..
T Consensus 211 A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d 279 (290)
T KOG4314|consen 211 AGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPED 279 (290)
T ss_pred HHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccc
Confidence 222222222333455555444433333333223344444444445567788899999999999988864
No 106
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=54.50 E-value=2e+02 Score=27.62 Aligned_cols=68 Identities=18% Similarity=0.298 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccc
Q 023719 158 LRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI 227 (278)
Q Consensus 158 l~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~ 227 (278)
.-|+.+.+...+.|++++..+...++++..+.=+.-.++..+. =.....-+.|+++.++|.+++..+.
T Consensus 259 vpg~iG~i~LlL~f~g~~~~~~~~~gllLiilG~iLiv~E~~~--p~fGvigl~Gii~~iiG~~~L~~~~ 326 (436)
T COG1030 259 VPGIIGAILLLLGFYGLLFLGINWAGLLLIILGAILIVAEAFV--PGFGVIGLLGIILFIIGLLLLFPSG 326 (436)
T ss_pred chHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhc--ccchHHHHHHHHHHHHhhhhccCCC
Confidence 3456677778888999999999887777664433333333221 1124566778888888988887555
No 107
>TIGR00997 ispZ intracellular septation protein A. This partially characterized protein, whose absence can cause a cell division defect in an intracellularly replicating bacterium, is found only so far only in the Proteobacteria.
Probab=53.22 E-value=1.3e+02 Score=25.04 Aligned_cols=59 Identities=19% Similarity=0.196 Sum_probs=33.0
Q ss_pred HHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHH--HHHHHHhHHhhccc
Q 023719 168 FSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGL--ALSFFGVLFIFRRI 227 (278)
Q Consensus 168 ~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi--~l~~~Gv~li~~~~ 227 (278)
..||.+.++.+.-.|+...-...+......++ .++|+++.+|+.. ++.+.|.-+..+++
T Consensus 11 i~Ff~~y~~~~I~~AT~~~~vat~~~~~~~~~-~~~~v~~m~~is~~lv~vFGglTl~~~d~ 71 (178)
T TIGR00997 11 IVFFATYKMTGIFAATIALLVATIIAIGLSYV-KYKKVEKMQWISFVLIVVFGGLTLIFHDS 71 (178)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HhCCccHHHHHHHHHHHHHHHHHHHhCCh
Confidence 34444444444444444444444555555554 4458999888764 44566666666544
No 108
>PF04279 IspA: Intracellular septation protein A ; InterPro: IPR006008 Intracellular septation protein A is a family of proteins which are essential for both normal cell division and bacterial virulence and are believed to play a role in the septation process [].; GO: 0016021 integral to membrane
Probab=52.55 E-value=1.3e+02 Score=24.87 Aligned_cols=62 Identities=21% Similarity=0.200 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHH--HHHHHhHHhhccc
Q 023719 165 LSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLA--LSFFGVLFIFRRI 227 (278)
Q Consensus 165 ~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~--l~~~Gv~li~~~~ 227 (278)
+....||...+..+.-.|+...-...+......++ .++|+++.+|++.+ +.+.|.-++.+.+
T Consensus 8 ~P~i~Ffv~y~~~~i~~At~~~i~~~~~~v~~~~~-~~r~v~~~~~is~~lv~vfG~lTl~~~d~ 71 (176)
T PF04279_consen 8 GPLILFFVVYKTYGIFVATAVLIVATLAQVAYSWI-RRRKVPKMQWISLVLVLVFGGLTLLFHDP 71 (176)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH-HhCcCchhHHHHHHHHHHHHHHHHHhCCc
Confidence 33445555555555555555555555555555544 44688888887644 3445566666544
No 109
>KOG4455 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.73 E-value=75 Score=24.18 Aligned_cols=26 Identities=15% Similarity=0.319 Sum_probs=19.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhc
Q 023719 151 HARNLLVLRALVGFLSLFSFVYSIQR 176 (278)
Q Consensus 151 ~~~~~~~l~g~~~~~~~~~~~~al~~ 176 (278)
+.+-.-+++|+.+....+.++|++-+
T Consensus 83 ~~f~~~f~~Gl~tyVl~Wtf~Y~lv~ 108 (110)
T KOG4455|consen 83 NLFTESFLGGLTTYVLAWTFFYGLVH 108 (110)
T ss_pred HHHHHHHhchHHHHHHHHHHHhhhhc
Confidence 55556778888888888888888754
No 110
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=49.14 E-value=31 Score=27.05 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=18.7
Q ss_pred hcCchHHHHHHHhhHHHHHHHHHHH
Q 023719 175 QRLPLSQATVLSFTAPIMASIAARI 199 (278)
Q Consensus 175 ~~~~~~~a~~l~~~~Pl~~~lla~l 199 (278)
.....-.++.+.|..|++..+++.+
T Consensus 63 ~~~~~~~aa~l~Y~lPll~li~g~~ 87 (135)
T PF04246_consen 63 PESSLLKAAFLVYLLPLLALIAGAV 87 (135)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3344557888899999988888764
No 111
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=48.53 E-value=31 Score=28.04 Aligned_cols=27 Identities=15% Similarity=0.338 Sum_probs=20.0
Q ss_pred hhcCchHHHHHHHhhHHHHHHHHHHHH
Q 023719 174 IQRLPLSQATVLSFTAPIMASIAARII 200 (278)
Q Consensus 174 l~~~~~~~a~~l~~~~Pl~~~lla~l~ 200 (278)
+..-..-.++.+.|..|++..+++..+
T Consensus 69 i~e~~llkaa~lvYllPLl~li~ga~l 95 (154)
T PRK10862 69 IAEGSLLRSALLVYMTPLVGLFLGAAL 95 (154)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556678888999999988877554
No 112
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=43.97 E-value=82 Score=28.43 Aligned_cols=81 Identities=7% Similarity=-0.086 Sum_probs=48.3
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccccccchhhHHHHH---HHH--HHHHHHHhhhhh-ccCCchhHHH
Q 023719 193 ASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQGREVSLQKLF---YYA--KNGFHAYVNSQV-FSGETRFICA 266 (278)
Q Consensus 193 ~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~g~l~---al~--~A~~~i~~r~~~-~~~~~~~i~~ 266 (278)
+.+.+.++-+.|-+..+..+..+-.+|.++....+.......+..|... ++. ..+..+-=+.+. ..++...+++
T Consensus 146 VmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~Emvf 225 (367)
T KOG1582|consen 146 VMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVF 225 (367)
T ss_pred hhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEE
Confidence 4566777888999999999999999999987755443322222233222 111 334555444432 2345556777
Q ss_pred HHHHHHH
Q 023719 267 YVAIDTS 273 (278)
Q Consensus 267 y~~l~~~ 273 (278)
|+..++.
T Consensus 226 ySy~iG~ 232 (367)
T KOG1582|consen 226 YSYGIGF 232 (367)
T ss_pred eeecccH
Confidence 7654443
No 113
>PRK10209 acid-resistance membrane protein; Provisional
Probab=42.64 E-value=2e+02 Score=24.00 Aligned_cols=19 Identities=26% Similarity=0.336 Sum_probs=14.8
Q ss_pred HHHHHHHHHhHHhhccccc
Q 023719 211 GGLALSFFGVLFIFRRILT 229 (278)
Q Consensus 211 ~gi~l~~~Gv~li~~~~~~ 229 (278)
.|++..++|++++..|...
T Consensus 85 ~Gil~ii~Gil~l~~P~~~ 103 (190)
T PRK10209 85 LGVAYLVLGYFFIRNPEVG 103 (190)
T ss_pred HHHHHHHHHHHHHHhHHHH
Confidence 5778888999998887643
No 114
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=41.61 E-value=72 Score=24.53 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=21.2
Q ss_pred cCCCcHHHHHHHHHHHHHhHHhhcc
Q 023719 202 REKLKIAEIGGLALSFFGVLFIFRR 226 (278)
Q Consensus 202 ~Er~~~~~~~gi~l~~~Gv~li~~~ 226 (278)
..|+++.|-.|+.++++|+.++..+
T Consensus 5 ~~KiN~~R~~al~lif~g~~vmy~g 29 (114)
T PF11023_consen 5 SSKINKIRTFALSLIFIGMIVMYIG 29 (114)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4678899999999999999888753
No 115
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=40.72 E-value=2.1e+02 Score=23.60 Aligned_cols=25 Identities=16% Similarity=0.465 Sum_probs=11.5
Q ss_pred HHHHHHhhHHHH-HHHHHHHHhcCCC
Q 023719 181 QATVLSFTAPIM-ASIAARIILREKL 205 (278)
Q Consensus 181 ~a~~l~~~~Pl~-~~lla~l~l~Er~ 205 (278)
......+..|+. .+++...++++|.
T Consensus 59 ~~~~~~~~~P~a~~~~l~~~l~~~~~ 84 (194)
T PF07698_consen 59 DISYFPYLIPVAAAAMLLTILIDPRL 84 (194)
T ss_pred cchhhhhhhHHHHHHHHHHHHhcchH
Confidence 334444555443 2334445556553
No 116
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=40.51 E-value=9.2 Score=34.31 Aligned_cols=66 Identities=17% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH-HhhcCchHHHHHHHhhHHHHH-HHHHHHHhc-CCCcHHHHHHHHHHHHHhH
Q 023719 156 LVLRALVGFLSLFSFVY-SIQRLPLSQATVLSFTAPIMA-SIAARIILR-EKLKIAEIGGLALSFFGVL 221 (278)
Q Consensus 156 ~~l~g~~~~~~~~~~~~-al~~~~~~~a~~l~~~~Pl~~-~lla~l~l~-Er~~~~~~~gi~l~~~Gv~ 221 (278)
+.+..++..++...||| -++-.+-+...++.+..-+++ .++-.++|| +-+-....++++++.+-.+
T Consensus 25 l~~~~llll~ail~w~~iimsd~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lL 93 (381)
T PF05297_consen 25 LLFGLLLLLVAILVWFFIIMSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLL 93 (381)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHH
Confidence 34444555556666555 444444444445544333333 333334444 4445556666666555443
No 117
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=39.83 E-value=2.8 Score=37.94 Aligned_cols=123 Identities=16% Similarity=0.122 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH-Hh---C-----CCCC------CCcchHHHHHHHH
Q 023719 96 MALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLR-RS---G-----QPIF------GPMHARNLLVLRA 160 (278)
Q Consensus 96 ~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~-~~---~-----~~~~------~~~~~~~~~~l~g 160 (278)
|+++.+|||......|.+. ..--..+...|-+.++.++...+.. .- + .+.+ .........+++|
T Consensus 1 M~itmlcwGSW~nt~kL~~-r~gR~~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGG 79 (336)
T PF07168_consen 1 MVITMLCWGSWPNTQKLAE-RRGRLPQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGG 79 (336)
T ss_pred CeeehhhhcChHHHHHHHH-hcCCccceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhh
Confidence 4678899999999999975 3333333455556665554443332 11 1 1100 1122233456677
Q ss_pred HHHHHHHHHHHHHhhcCchHHHHHHHh-hHHHHHHHHHHHHhcCCCcHHHHH--HHHHHHHHh
Q 023719 161 LVGFLSLFSFVYSIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIAEIG--GLALSFFGV 220 (278)
Q Consensus 161 ~~~~~~~~~~~~al~~~~~~~a~~l~~-~~Pl~~~lla~l~l~Er~~~~~~~--gi~l~~~Gv 220 (278)
+..-++..+.-+|+.....+.+-.+.. +.-++.+.+-+ |+..|.++..++ |+.+.++.+
T Consensus 80 vvfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NY-fld~~~n~a~iLF~GV~cf~iAI 141 (336)
T PF07168_consen 80 VVFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNY-FLDPKINRAEILFPGVACFLIAI 141 (336)
T ss_pred HhhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeee-eccCCCCCceEEEccHHHHHHHH
Confidence 777788888888888888887766644 44444555554 445666654333 444444444
No 118
>COG2323 Predicted membrane protein [Function unknown]
Probab=38.15 E-value=2.3e+02 Score=24.59 Aligned_cols=79 Identities=15% Similarity=0.220 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHH
Q 023719 121 FETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARII 200 (278)
Q Consensus 121 ~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~ 200 (278)
+.-.++|.++..+.++.+++..+++....-...-.++...+....+...+... .+.-...+...+.-++..+++++-
T Consensus 4 ~~~~~ir~vi~~~~l~l~~ri~Gkr~isqmt~fd~vv~i~iG~i~~~~i~~~~---i~~~~~~~~~~~~~~l~~~l~~l~ 80 (224)
T COG2323 4 LLEVAIRSVIGYLILLLLLRIMGKRSISQMTIFDFVVMITLGSIAGDAIFDDD---VSILPTIIAILTLALLQILLSYLS 80 (224)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCcCccccCCHHHHHHHHHHHHHHHHHhhCCC---CchHHHHHHHHHHHHHHHHHHHHH
Confidence 44567999999999998888777665444333334444444444444444333 344444444555556666777766
Q ss_pred hc
Q 023719 201 LR 202 (278)
Q Consensus 201 l~ 202 (278)
.|
T Consensus 81 ~k 82 (224)
T COG2323 81 LK 82 (224)
T ss_pred hc
Confidence 65
No 119
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=37.67 E-value=1e+02 Score=20.41 Aligned_cols=21 Identities=14% Similarity=0.129 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhHHhhcccc
Q 023719 208 AEIGGLALSFFGVLFIFRRIL 228 (278)
Q Consensus 208 ~~~~gi~l~~~Gv~li~~~~~ 228 (278)
..++|..+.++|++++..|+.
T Consensus 4 v~v~G~~lv~~Gii~~~lPGp 24 (53)
T PF09656_consen 4 VGVLGWVLVVAGIIMLPLPGP 24 (53)
T ss_pred hhhHHHHHHHHHHHhhcCCCC
Confidence 356889999999999998863
No 120
>TIGR02206 intg_mem_TP0381 conserved hypothetical integral membrane protein TIGR02206. This model represents a family of hydrophobic proteins with seven predicted transmembrane alpha helices. Members are found in Bacillus subtilis (ywaF), TP0381 from Treponema pallidum (TP0381), Streptococcus pyogenes, Rhodococcus erythropolis, etc.
Probab=35.18 E-value=2.9e+02 Score=23.73 Aligned_cols=102 Identities=7% Similarity=-0.011 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccccc--cc----hhhH
Q 023719 164 FLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQ--GR----EVSL 237 (278)
Q Consensus 164 ~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~--~~----~~~~ 237 (278)
-++...|+..-...+..+.-.+..+.-.. .+....++.+|-...+.....-...++.-++.|+...- .+ ....
T Consensus 49 ~i~~~~w~~~~~~~~~~e~LPLhlC~ia~-~~~~~~l~~~~~~~~~~~~~~gi~Ga~~Ali~Pd~~~y~fph~~~~~ffi 127 (222)
T TIGR02206 49 VIGLMLWYVLLGGFTLDESLPLHLCDIAI-ILAAIMLITKRRWFFQLTYFWGIGGSFQALLTPDLYPYGFPHVAFISFFI 127 (222)
T ss_pred HHHHHHHHHhcCCCchhhcCChhhccHHH-HHHHHHHHcCcHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcHHHHHHHH
Confidence 35556677666666777666665543222 22223333444445555444333334455667775421 11 2233
Q ss_pred HHHHHHHHHHHHHHhhhhhccCCchhHHH
Q 023719 238 QKLFYYAKNGFHAYVNSQVFSGETRFICA 266 (278)
Q Consensus 238 g~l~al~~A~~~i~~r~~~~~~~~~~i~~ 266 (278)
+-.+.+..+++.+..++...+......++
T Consensus 128 ~H~~l~~~~l~~~~~~~~rp~~~~~~~~~ 156 (222)
T TIGR02206 128 GHYFLLLAALYLILIFRERPTLRGLKVAV 156 (222)
T ss_pred HHHHHHHHHHHHHHHhccCCchHHHHHHH
Confidence 44445556677777776654444433333
No 121
>PRK00259 intracellular septation protein A; Reviewed
Probab=33.25 E-value=2.9e+02 Score=23.05 Aligned_cols=59 Identities=17% Similarity=0.203 Sum_probs=31.0
Q ss_pred HHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHH--HHHHHHhHHhhccc
Q 023719 168 FSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGL--ALSFFGVLFIFRRI 227 (278)
Q Consensus 168 ~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi--~l~~~Gv~li~~~~ 227 (278)
..||.+.+..+.-.|+...-..-+......+ +.++|+++.+|+.. ++.+.|.-+..+.+
T Consensus 11 i~Ffv~y~~~gi~~AT~~~i~a~~~~~~~~~-~~~~~v~~m~~i~~~lv~vfGglTl~l~d~ 71 (179)
T PRK00259 11 ILFFAAYKLYGIYAATAALIVATVIQLAISW-IRYRKVEKMQLISLVVVVVFGGLTLVFHDD 71 (179)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HHhCCcchhHHHHHHHHHHHHHHHHHhCCC
Confidence 4445455544444444444444444445544 44558888777654 34455555555444
No 122
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=32.85 E-value=4.2e+02 Score=24.91 Aligned_cols=95 Identities=13% Similarity=-0.010 Sum_probs=47.0
Q ss_pred HHHHHhhHHHHHHHHHHHHhcCCCcHHH--HHHHHHHHHHhHHhhccccccccchhhHHHHHHHHHHHHHHHhhhhhcc-
Q 023719 182 ATVLSFTAPIMASIAARIILREKLKIAE--IGGLALSFFGVLFIFRRILTTQGREVSLQKLFYYAKNGFHAYVNSQVFS- 258 (278)
Q Consensus 182 a~~l~~~~Pl~~~lla~l~l~Er~~~~~--~~gi~l~~~Gv~li~~~~~~~~~~~~~~g~l~al~~A~~~i~~r~~~~~- 258 (278)
++.-..+.-..+.+++++..|.+.+... ++|+++.++++.+=..-.....+...+..++..+.+-...+=+-++.++
T Consensus 161 ~~~~~~~~I~~Ai~~G~~~y~~~~~~~~~t~i~vvll~~~v~~G~~~p~~~~~~~~W~~ii~~Y~~iAs~lPVw~Llqpr 240 (376)
T PF02554_consen 161 AATSSLLFIPIAILFGLLVYKRGGNLGPATIIGVVLLLLAVWLGMYFPISLLSVTTWIIIIFIYYFIASVLPVWKLLQPR 240 (376)
T ss_pred HHHHHHHHHHHHHHHhHhheecCCchHhhHHHHHHHHHHHHHhhhhcccccCcHHHHHHHHHHHHHHHHHhhHHHHhCch
Confidence 3333444455677778877777776654 4444444443333211111111223444455544433333334444444
Q ss_pred CCchhHHHHHHHHHHHhc
Q 023719 259 GETRFICAYVAIDTSKIG 276 (278)
Q Consensus 259 ~~~~~i~~y~~l~~~lig 276 (278)
+.-.....|.++.+..+|
T Consensus 241 dyl~~~~L~~~~~~~~ig 258 (376)
T PF02554_consen 241 DYLNGFLLIGMLIGLVIG 258 (376)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 444467777777776665
No 123
>PRK11715 inner membrane protein; Provisional
Probab=30.77 E-value=4.9e+02 Score=25.01 Aligned_cols=97 Identities=13% Similarity=0.117 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhhHHH-HHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccccccch
Q 023719 156 LVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPI-MASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQGRE 234 (278)
Q Consensus 156 ~~l~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl-~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~ 234 (278)
-++.|+..++.|.+...==.|++-..|=++....++ ...+....++|.+-...-+.+++.++-|++.++....+ .-
T Consensus 334 YlLVGlAl~lFYLLLLSlSEHigF~~AYliAa~a~v~li~~Y~~~vl~~~k~g~~~~~~L~~LYg~Ly~lLq~ED---yA 410 (436)
T PRK11715 334 YLLVGLALVLFYLLLLSLSEHIGFTLAYLIAALACVLLIGFYLSAVLRSWKRGLLFAAALAALYGVLYGLLQSED---YA 410 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhH---HH
Confidence 345555555444443333344454444444443322 23334444556554555555566666666554432211 11
Q ss_pred hhHHHHHHHH-HHHHHHHhhhh
Q 023719 235 VSLQKLFYYA-KNGFHAYVNSQ 255 (278)
Q Consensus 235 ~~~g~l~al~-~A~~~i~~r~~ 255 (278)
...|.++.+. -|+.+.++||+
T Consensus 411 LL~GSllLF~~La~vM~~TR~i 432 (436)
T PRK11715 411 LLLGSLLLFAVLALVMFLTRRI 432 (436)
T ss_pred HHHHHHHHHHHHHHHHheeecc
Confidence 2233332222 45566666664
No 124
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=29.85 E-value=4.4e+02 Score=24.16 Aligned_cols=48 Identities=8% Similarity=-0.051 Sum_probs=27.0
Q ss_pred CchHHHHHHHhhHHHHHHHHHHH--HhcCCCcHHHHHHHHHHHHHhHHhh
Q 023719 177 LPLSQATVLSFTAPIMASIAARI--ILREKLKIAEIGGLALSFFGVLFIF 224 (278)
Q Consensus 177 ~~~~~a~~l~~~~Pl~~~lla~l--~l~Er~~~~~~~gi~l~~~Gv~li~ 224 (278)
.+.+....+.....+...+...+ .+-||.++++.+-....+.++..+.
T Consensus 52 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~ 101 (394)
T PRK10213 52 ISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLL 101 (394)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHH
Confidence 45555555554444444443322 2348899988876666666654443
No 125
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=28.73 E-value=5.3e+02 Score=24.74 Aligned_cols=29 Identities=17% Similarity=0.370 Sum_probs=14.2
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHhHHhh
Q 023719 196 AARIILREKLKIAEIGGLALSFFGVLFIF 224 (278)
Q Consensus 196 la~l~l~Er~~~~~~~gi~l~~~Gv~li~ 224 (278)
...-++|.+-...-+.+++.++-|++.++
T Consensus 369 Y~~~vl~~~k~~~~~~~~L~~LY~~Ly~l 397 (430)
T PF06123_consen 369 YLSSVLKSWKRGLIFAGLLAALYGFLYVL 397 (430)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 33445554444444455555555554443
No 126
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=26.11 E-value=1.2e+02 Score=22.76 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHH
Q 023719 188 TAPIMASIAARIILREKLKIAEIGGLALSFFGVLF 222 (278)
Q Consensus 188 ~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~l 222 (278)
..|++..++.-.++.|+.....+.-+.+.++|+++
T Consensus 53 v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~ 87 (100)
T TIGR02230 53 AIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVI 87 (100)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence 35566655555677777765556666666666654
No 127
>PF11177 DUF2964: Protein of unknown function (DUF2964); InterPro: IPR021347 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=25.69 E-value=2.3e+02 Score=19.42 Aligned_cols=45 Identities=16% Similarity=0.157 Sum_probs=27.9
Q ss_pred HHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccc
Q 023719 183 TVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI 227 (278)
Q Consensus 183 ~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~ 227 (278)
.++..+.-+..++=+.+|-.++.-+..+++++.+.++-+....|.
T Consensus 14 avFiaLagl~~~I~GlLfD~~~~~~yg~~al~~Gv~~fV~~Lnp~ 58 (62)
T PF11177_consen 14 AVFIALAGLAAVIHGLLFDEERVFRYGVIALVVGVAGFVVMLNPA 58 (62)
T ss_pred HHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 333444455555556666667777777777777777766666554
No 128
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=25.38 E-value=5.1e+02 Score=23.42 Aligned_cols=46 Identities=11% Similarity=-0.077 Sum_probs=22.7
Q ss_pred CchHHHHHHHhhHHHHHHHHHHH--HhcCCCcHHHHHHHHHHHHHhHH
Q 023719 177 LPLSQATVLSFTAPIMASIAARI--ILREKLKIAEIGGLALSFFGVLF 222 (278)
Q Consensus 177 ~~~~~a~~l~~~~Pl~~~lla~l--~l~Er~~~~~~~gi~l~~~Gv~l 222 (278)
.+..+.+.+....-+...+...+ .+.+|.+.++.+...+...++.+
T Consensus 237 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~ 284 (382)
T PRK11128 237 YSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRW 284 (382)
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 45555555555444333322221 23477777776655555544433
No 129
>PRK10666 ammonium transporter; Provisional
Probab=25.37 E-value=6.1e+02 Score=24.31 Aligned_cols=25 Identities=12% Similarity=0.256 Sum_probs=14.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhh
Q 023719 151 HARNLLVLRALVGFLSLFSFVYSIQ 175 (278)
Q Consensus 151 ~~~~~~~l~g~~~~~~~~~~~~al~ 175 (278)
+.....+++.++...++..|.-+-.
T Consensus 218 hn~~~~~lGt~lLw~GW~gFN~Gs~ 242 (428)
T PRK10666 218 HNLPMVFTGTAILYIGWFGFNAGSA 242 (428)
T ss_pred CCHHHHHHHHHHHHHHHHhccchhh
Confidence 4445556666666666666655443
No 130
>PF09529 Intg_mem_TP0381: Integral membrane protein (intg_mem_TP0381); InterPro: IPR011737 This entry represents a family of hydrophobic proteins with seven predicted transmembrane alpha helices. Members are found in Bacillus subtilis (ywaF), TP0381 from Treponema pallidum (TP0381), Streptococcus pyogenes, Rhodococcus erythropolis, etc.
Probab=22.77 E-value=4.7e+02 Score=22.11 Aligned_cols=94 Identities=14% Similarity=0.040 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccccccc------hh
Q 023719 162 VGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQGR------EV 235 (278)
Q Consensus 162 ~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~~~------~~ 235 (278)
+.-+....|.....+.+..+.-.+..+.-......-.++.| |-...+.....-...|+.-++.|+...-+. ..
T Consensus 50 ~~~i~~~~~~~~~~~~~~~e~LPLhlC~i~~~~~~l~l~~k-~~~~~~~~~~~gi~Gai~Ali~Pd~~~~~~~h~~~~~f 128 (225)
T PF09529_consen 50 LQEIILYIWYIYIGYFSLWESLPLHLCRIAMILAALALITK-KKKLFEYFYFWGIIGAIQALITPDLSYYGFPHFTFIQF 128 (225)
T ss_pred HHHHHHHHHHHhcCCCchhccCCchhhhHHHHHHHHHHHcC-cHHHHHHHHHHHHHHHHHHeeeccCcCCCCcHHHHHHH
Confidence 33455556666666666666666655432222222223333 334556655443334444566777633221 22
Q ss_pred hHHHHHHHHHHHHHHHhhhhh
Q 023719 236 SLQKLFYYAKNGFHAYVNSQV 256 (278)
Q Consensus 236 ~~g~l~al~~A~~~i~~r~~~ 256 (278)
..+-...+..+++.+..++..
T Consensus 129 ~i~H~~li~~~~~~~~~~~~~ 149 (225)
T PF09529_consen 129 FISHGLLILAPLYLLFVEKYR 149 (225)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 334444455667777767654
No 131
>COG2917 Intracellular septation protein A [Cell division and chromosome partitioning]
Probab=22.54 E-value=4.6e+02 Score=21.89 Aligned_cols=61 Identities=20% Similarity=0.252 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHH-HHH-HHHHhHHhhcc
Q 023719 165 LSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGG-LAL-SFFGVLFIFRR 226 (278)
Q Consensus 165 ~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~g-i~l-~~~Gv~li~~~ 226 (278)
+....||.+.+....-.|+...-...+....+.|+..| |+.+.+++. .++ .+.|.-+..+.
T Consensus 8 ~Pli~FF~~yk~~~I~~AT~~livAt~i~l~~~w~~~r-kv~km~l~s~~~v~vFG~lTl~f~~ 70 (180)
T COG2917 8 GPLILFFAAYKVYGIYAATAVLIVATVIQLAILWIKYR-KVEKMQLISGVVVVVFGGLTLIFHN 70 (180)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhchhHhhccC
Confidence 44455666666655556666666666666666665544 556666554 333 33344444443
No 132
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=22.49 E-value=5.8e+02 Score=23.07 Aligned_cols=48 Identities=8% Similarity=-0.076 Sum_probs=26.9
Q ss_pred CchHHHHHHHhhHHHHHHHHHHHH--hcCCCcHHHHHHHHHHHHHhHHhh
Q 023719 177 LPLSQATVLSFTAPIMASIAARII--LREKLKIAEIGGLALSFFGVLFIF 224 (278)
Q Consensus 177 ~~~~~a~~l~~~~Pl~~~lla~l~--l~Er~~~~~~~gi~l~~~Gv~li~ 224 (278)
.+....+.+.....+..++...+. +.+|.+.++.+.+.....++-.+.
T Consensus 237 ~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~ 286 (382)
T TIGR00902 237 ISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAI 286 (382)
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 555566666555544444443332 347788888776555555554443
No 133
>PRK02935 hypothetical protein; Provisional
Probab=21.83 E-value=2.1e+02 Score=21.80 Aligned_cols=25 Identities=20% Similarity=0.398 Sum_probs=20.9
Q ss_pred cCCCcHHHHHHHHHHHHHhHHhhcc
Q 023719 202 REKLKIAEIGGLALSFFGVLFIFRR 226 (278)
Q Consensus 202 ~Er~~~~~~~gi~l~~~Gv~li~~~ 226 (278)
..|+++.|-.|+.+.++|.+++..+
T Consensus 6 ssKINkiRt~aL~lvfiG~~vMy~G 30 (110)
T PRK02935 6 SNKINKIRTFALSLVFIGFIVMYLG 30 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688899999999999999887644
No 134
>PRK00972 tetrahydromethanopterin S-methyltransferase subunit E; Provisional
Probab=21.59 E-value=2.2e+02 Score=25.28 Aligned_cols=39 Identities=13% Similarity=0.254 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 023719 91 SGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYL 137 (278)
Q Consensus 91 ~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~ 137 (278)
.|..+.+.+++.|.++. -+++|.....+-..++.++=..
T Consensus 65 ygl~~ai~g~vA~~lm~--------~~~~~vlAi~~Ga~vaa~vhg~ 103 (292)
T PRK00972 65 YGLWCAIAGAVAWALMA--------FGLNPVLAIIVGAGVAALVHGV 103 (292)
T ss_pred hHHHHHHHHHHHHHHHH--------cCccHHHHHHHHHHHHHHHHHH
Confidence 47778888888888652 3677777666666666665443
No 135
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=21.52 E-value=4.9e+02 Score=21.86 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=16.4
Q ss_pred cHHH-HHHHHHHHHHhHHhhccc
Q 023719 206 KIAE-IGGLALSFFGVLFIFRRI 227 (278)
Q Consensus 206 ~~~~-~~gi~l~~~Gv~li~~~~ 227 (278)
.+.. ..|++.+++|++....|.
T Consensus 75 ~W~lll~Gil~i~~gil~~~~~~ 97 (185)
T COG3247 75 FWPLLLSGILSILLGILAGFNPG 97 (185)
T ss_pred chHHHHHHHHHHHHHHHHHHhhh
Confidence 3444 678888888888888775
No 136
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=21.31 E-value=9.1e+02 Score=24.88 Aligned_cols=137 Identities=11% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHH
Q 023719 121 FETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARII 200 (278)
Q Consensus 121 ~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~ 200 (278)
..+..+|..++++.+..++++..+.... ...++.+++-+++-...++.....= .-.....|++..-+-.++
T Consensus 93 ~~~~~lk~~lag~~~~~~l~~~~~~~~~-----~~~~i~s~~Yafsg~~~~~~~~~~f----ld~~i~lPL~llgie~~~ 163 (843)
T PF09586_consen 93 LLLIILKIGLAGLFFYLYLRKFKKSRSD-----WAALIGSLLYAFSGYVIYYSFNIMF----LDAMILLPLLLLGIERLL 163 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccc-----HHHHHHHHHHHHHHHHHHHhhhHHH----HHHHHHHHHHHHHHHHHH
Q ss_pred hcCCCcHHHHHHHHHHHHHhHHhhccccccccchhhHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHhcCC
Q 023719 201 LREKLKIAEIGGLALSFFGVLFIFRRILTTQGREVSLQKLFYYAKNGFHAYVNSQVFSGETRFICAYVAIDTSKIGTY 278 (278)
Q Consensus 201 l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~g~l~al~~A~~~i~~r~~~~~~~~~~i~~y~~l~~~lig~~ 278 (278)
-++|....-+.-.+..+.--.... ...+..+.|.++..+.++.........-.+...+.|..++++
T Consensus 164 ~~~k~~~~~~~~~l~~i~nfYf~y------------m~~if~~iY~~~r~~~~~~k~~~~~~~~~~~~~ilg~~lsa~ 229 (843)
T PF09586_consen 164 KEKKWWLFIISLALALISNFYFAY------------MICIFLVIYFLIRYFFKNWKNFFKKILRFIGSSILGVGLSAF 229 (843)
T ss_pred hcCCcchhHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 137
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=21.01 E-value=99 Score=24.63 Aligned_cols=28 Identities=11% Similarity=0.192 Sum_probs=23.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 023719 87 GSRYSGLMCMALSSTIYFFMQVISDVFM 114 (278)
Q Consensus 87 ~~~~~g~l~~l~aa~~~~~~~v~~k~~~ 114 (278)
+|+..|.++.-+-+++|+++++..|-+-
T Consensus 102 sn~~LgwIL~gVf~lIWslY~~~~~~l~ 129 (138)
T PF07123_consen 102 SNNLLGWILLGVFGLIWSLYFVYTSTLD 129 (138)
T ss_pred cCchhHHHHHHHHHHHHHHHHhhccccC
Confidence 3568899999999999999999988753
No 138
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=20.78 E-value=84 Score=28.71 Aligned_cols=91 Identities=14% Similarity=0.146 Sum_probs=50.5
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHhh-------cCCCHHHH--HHHHHHHHHHHH-----HHHHHHh--CCCC---
Q 023719 86 NGSRYSGLMCMALSSTIYFFMQVISDVFMV-------QSIPLFET--VFMRCTVTLILS-----YLWLRRS--GQPI--- 146 (278)
Q Consensus 86 ~~~~~~g~l~~l~aa~~~~~~~v~~k~~~~-------~~~~p~~~--~~~R~~~a~l~l-----~~~~~~~--~~~~--- 146 (278)
++++..|+...+.+.+|+++.......+.+ +++|++.+ +++-|-++..++ ..++++. +.++
T Consensus 214 g~~~~~Gl~i~~faG~c~slFSPafNlAtNDqwhtL~~gvP~L~VYtafFyFs~s~fv~~~~lni~~Ly~P~~g~p~Ssl 293 (336)
T PF07168_consen 214 GSSTLIGLGIAFFAGLCFSLFSPAFNLATNDQWHTLKPGVPHLVVYTAFFYFSLSCFVVAIILNIWFLYRPVLGVPKSSL 293 (336)
T ss_pred cccceeeehHHHHHhHHHHhcCchhhccccccccccCCCCCceEEEeehHHHHHHHHHHHHHHHhhheeccccCCChhhH
Confidence 356677999999999999998888777543 23444221 222222222222 2222211 1110
Q ss_pred ---CCCcchHHHHHHHHHHHHHHHHHHHHHhhc
Q 023719 147 ---FGPMHARNLLVLRALVGFLSLFSFVYSIQR 176 (278)
Q Consensus 147 ---~~~~~~~~~~~l~g~~~~~~~~~~~~al~~ 176 (278)
...++.+.+.++.|++..++..+.|.+=|-
T Consensus 294 ~ay~~D~~gR~wa~lAG~lCg~GNglQFmgGQA 326 (336)
T PF07168_consen 294 KAYLKDWNGRGWAFLAGLLCGFGNGLQFMGGQA 326 (336)
T ss_pred HHHhhccCCccHHHHHHHHHhCCceeeecccch
Confidence 012233456778888888888887765443
No 139
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.05 E-value=6.4e+02 Score=23.73 Aligned_cols=80 Identities=13% Similarity=0.194 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH-----HHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcC
Q 023719 103 YFFMQVISDVFMVQSIPLFETVFMRCTVTLILS-----YLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRL 177 (278)
Q Consensus 103 ~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l-----~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~al~~~ 177 (278)
|+.+.-++|.+. +++--+.+--...+++-++. +.++.+.+.+ ..+|. .-++.=.+..++..+.|.+.++.
T Consensus 201 Ws~slY~i~ql~-~nLq~Iwieyr~yvLgYvlivgliSfaVCYK~GPp-~d~RS---~~ilmWtLqli~lvl~Yfsvq~p 275 (452)
T KOG3817|consen 201 WSISLYVIKQLA-DNLQLIWIEYRDYVLGYVLIVGLISFAVCYKIGPP-KDPRS---QTILMWTLQLIGLVLAYFSVQHP 275 (452)
T ss_pred chhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC-CCcch---hhHHHHHHHHHHHHHHHHhcccH
Confidence 566666666654 44444444444444443322 2233333322 22221 11222223345555667788888
Q ss_pred chHHHHHHHh
Q 023719 178 PLSQATVLSF 187 (278)
Q Consensus 178 ~~~~a~~l~~ 187 (278)
..+.|.+++.
T Consensus 276 ~~a~A~iI~~ 285 (452)
T KOG3817|consen 276 SAAIAAIIMV 285 (452)
T ss_pred HHHHHHHHHH
Confidence 7777665544
Done!