Query 023719
Match_columns 278
No_of_seqs 352 out of 1875
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 11:38:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023719.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023719hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 99.0 2.5E-08 8.6E-13 75.9 14.4 70 157-226 34-104 (110)
2 2i68_A Protein EMRE; transmemb 98.8 2E-08 6.9E-13 79.3 9.4 71 157-227 34-105 (137)
3 3b9w_A Ammonium transporter fa 18.4 5.3E+02 0.018 23.2 12.6 26 149-174 173-198 (407)
4 2b2h_A AMT-1, ammonium transpo 16.6 5.7E+02 0.02 22.9 13.5 25 149-173 183-207 (399)
5 3arc_T Photosystem II reaction 11.4 1.6E+02 0.0056 16.5 2.1 15 193-207 15-29 (32)
6 1u7g_A Probable ammonium trans 10.8 8.3E+02 0.028 21.7 14.1 123 149-276 194-325 (385)
7 2ww9_C Protein transport prote 8.3 2.8E+02 0.0097 19.3 2.9 21 204-224 58-78 (87)
8 1rh5_C Secbeta; protein transl 8.0 3.3E+02 0.011 17.0 2.9 22 204-225 27-48 (53)
9 3gia_A Uncharacterized protein 7.4 1.1E+03 0.036 20.4 7.8 19 186-204 350-368 (444)
10 2hac_A T-cell surface glycopro 6.2 1.9E+02 0.0065 16.3 0.9 16 192-207 15-30 (33)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.96 E-value=2.5e-08 Score=75.91 Aligned_cols=70 Identities=20% Similarity=0.220 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchHHHHHH-HhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhcc
Q 023719 157 VLRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR 226 (278)
Q Consensus 157 ~l~g~~~~~~~~~~~~al~~~~~~~a~~l-~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~ 226 (278)
+...+....++.++.+++++.|.+.+..+ ..+.|+++++++++++||+++..+++|+.++++|++++...
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 45556667888999999999999999888 79999999999999999999999999999999999988654
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.81 E-value=2e-08 Score=79.32 Aligned_cols=71 Identities=20% Similarity=0.208 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchHHHHHH-HhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccc
Q 023719 157 VLRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI 227 (278)
Q Consensus 157 ~l~g~~~~~~~~~~~~al~~~~~~~a~~l-~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~ 227 (278)
++..++..+++++|.+++++.|++.+..+ .++.|++++++++++++|+++..+++|++++++|++++...+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 55666677889999999999999999988 899999999999999999999999999999999999986543
No 3
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=18.37 E-value=5.3e+02 Score=23.23 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=16.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHh
Q 023719 149 PMHARNLLVLRALVGFLSLFSFVYSI 174 (278)
Q Consensus 149 ~~~~~~~~~l~g~~~~~~~~~~~~al 174 (278)
+.+......++.++..+++..|.-++
T Consensus 173 ~~hn~~~~~lGt~lLW~GWfGFN~Gl 198 (407)
T 3b9w_A 173 DATSDRFSMLGSMVLWLFWPSFATAI 198 (407)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 34455566666666667777777773
No 4
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=16.59 E-value=5.7e+02 Score=22.88 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=16.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHH
Q 023719 149 PMHARNLLVLRALVGFLSLFSFVYS 173 (278)
Q Consensus 149 ~~~~~~~~~l~g~~~~~~~~~~~~a 173 (278)
+.+......++.++..+++..|.-+
T Consensus 183 ~~hn~~~~~lG~~lLW~GWfGFN~G 207 (399)
T 2b2h_A 183 EPHSIPLTLIGAALLWFGWFGFNGG 207 (399)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHHHHHHHhhcHH
Confidence 3455666667777777777777654
No 5
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=11.37 E-value=1.6e+02 Score=16.46 Aligned_cols=15 Identities=33% Similarity=0.339 Sum_probs=9.8
Q ss_pred HHHHHHHHhcCCCcH
Q 023719 193 ASIAARIILREKLKI 207 (278)
Q Consensus 193 ~~lla~l~l~Er~~~ 207 (278)
.+++-.++|||++..
T Consensus 15 giiFFAI~FRePPri 29 (32)
T 3arc_T 15 ALFFFAIFFREPPRI 29 (32)
T ss_dssp HHHHHHHHTSCCCCC
T ss_pred HHHHHhhhhcCCCCC
Confidence 344555788998764
No 6
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=10.82 E-value=8.3e+02 Score=21.67 Aligned_cols=123 Identities=11% Similarity=-0.044 Sum_probs=53.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHhhcC-c--hHHHHHHHhhHH----HHHHHHHHHHhcCCCcHHHHHHHHHHHHHhH
Q 023719 149 PMHARNLLVLRALVGFLSLFSFVYSIQRL-P--LSQATVLSFTAP----IMASIAARIILREKLKIAEIGGLALSFFGVL 221 (278)
Q Consensus 149 ~~~~~~~~~l~g~~~~~~~~~~~~al~~~-~--~~~a~~l~~~~P----l~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~ 221 (278)
+.+......++..+..+++..|.-+-... + .+.+.+-.++.. +-..++.+ +.+.|++.....- -+++|.+
T Consensus 194 ~~hn~~~~~lGt~lLW~GWfGFN~GS~l~~~~~a~~a~~nT~lAaaag~l~~~~~~~-~~~gk~~~~~~~n--G~lAGLV 270 (385)
T 1u7g_A 194 KPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAILGWIFGEW-ALRGLPSLLGACS--GAIAGLV 270 (385)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHSSCCHHHHHH--HHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhhhcchhhhhccchhHhHHHHHHHHHHHHHHHHHHHHH-HHcCCCCHHHHHH--HHHHhhh
Confidence 34556666667777777777776432222 1 122211122222 22222333 3467777654332 2344544
Q ss_pred Hhhccccccccc--hhhHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHhc
Q 023719 222 FIFRRILTTQGR--EVSLQKLFYYAKNGFHAYVNSQVFSGETRFICAYVAIDTSKIG 276 (278)
Q Consensus 222 li~~~~~~~~~~--~~~~g~l~al~~A~~~i~~r~~~~~~~~~~i~~y~~l~~~lig 276 (278)
-+. |....-.. -..+|.+.++..-...-+.++..+-+|+.. ++-.+.++.+.|
T Consensus 271 aIT-a~~~~v~p~~A~iiG~iag~i~~~~~~~l~~~l~iDD~l~-a~~vHgv~Gi~G 325 (385)
T 1u7g_A 271 GVT-PACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCD-VFGVHGVCGIVG 325 (385)
T ss_dssp HHT-TTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCGGG-HHHHHHHHHHHH
T ss_pred hhc-cCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCCC-CEeecccccHHH
Confidence 443 33222221 233566555553333332333234444443 444444444444
No 7
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=8.26 E-value=2.8e+02 Score=19.28 Aligned_cols=21 Identities=10% Similarity=0.108 Sum_probs=14.1
Q ss_pred CCcHHHHHHHHHHHHHhHHhh
Q 023719 204 KLKIAEIGGLALSFFGVLFIF 224 (278)
Q Consensus 204 r~~~~~~~gi~l~~~Gv~li~ 224 (278)
|++...++.+.++|+++++++
T Consensus 58 KV~P~~VLv~sl~FIa~VilL 78 (87)
T 2ww9_C 58 RVDSLVVLFLSVGFIFSVIAL 78 (87)
T ss_dssp CCCHHHHHHHHHHHHHHHHHC
T ss_pred EEcCeeehhhHHHHHHHHHHH
Confidence 566666677777777776665
No 8
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=7.97 E-value=3.3e+02 Score=16.96 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=17.4
Q ss_pred CCcHHHHHHHHHHHHHhHHhhc
Q 023719 204 KLKIAEIGGLALSFFGVLFIFR 225 (278)
Q Consensus 204 r~~~~~~~gi~l~~~Gv~li~~ 225 (278)
|+++..++++.++++..+++..
T Consensus 27 Ki~P~~Vl~~si~~i~~V~~L~ 48 (53)
T 1rh5_C 27 RVKPEHVIGVTVAFVIIEAILT 48 (53)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeehhhhHHHHHHHHHHHH
Confidence 7788888888888888777653
No 9
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=7.44 E-value=1.1e+03 Score=20.37 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=8.9
Q ss_pred HhhHHHHHHHHHHHHhcCC
Q 023719 186 SFTAPIMASIAARIILREK 204 (278)
Q Consensus 186 ~~~~Pl~~~lla~l~l~Er 204 (278)
..........++.+.+|.|
T Consensus 350 ~~~~~~~~~~~~~~~~r~~ 368 (444)
T 3gia_A 350 VFMVIYLFVILSHYILIDE 368 (444)
T ss_dssp HHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHhhhc
Confidence 3333344444555666543
No 10
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=6.23 E-value=1.9e+02 Score=16.27 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=9.3
Q ss_pred HHHHHHHHHhcCCCcH
Q 023719 192 MASIAARIILREKLKI 207 (278)
Q Consensus 192 ~~~lla~l~l~Er~~~ 207 (278)
..+++-.+++|||+.+
T Consensus 15 Ygii~T~Ly~R~K~~~ 30 (33)
T 2hac_A 15 YGVILTALFLRVKFSR 30 (33)
T ss_dssp HHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhc
Confidence 3445556667776654
Done!