Query 023719
Match_columns 278
No_of_seqs 352 out of 1875
Neff 8.0
Searched_HMMs 13730
Date Mon Mar 25 11:38:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023719.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023719hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2r6gf1 e.70.1.1 (F:13-260) Ma 9.8 3.5E+02 0.026 20.5 8.5 63 158-224 7-69 (248)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 9.0 1.3E+02 0.0092 14.8 3.5 16 191-206 13-28 (30)
3 d1u7ga_ f.44.1.1 (A:) Ammonium 7.9 5E+02 0.036 20.8 16.7 122 151-276 194-323 (383)
4 d2axtl1 f.23.31.1 (L:1-37) Pho 6.3 2.1E+02 0.015 14.9 3.0 18 90-107 18-35 (37)
5 d2zgwa1 b.34.1.1 (A:189-235) B 4.2 2E+02 0.014 15.6 1.5 12 18-29 10-21 (47)
6 d1fx8a_ f.19.1.1 (A:) Glycerol 3.4 7.9E+02 0.058 17.9 11.1 25 118-142 138-162 (254)
7 d2axth1 f.23.33.1 (H:2-65) Pho 3.4 2.6E+02 0.019 16.5 1.7 21 84-104 23-43 (64)
8 d1e12a_ f.13.1.1 (A:) Halorhod 3.0 8.8E+02 0.064 17.5 12.8 10 188-197 92-101 (239)
9 d2d6fa1 b.38.3.1 (A:2-73) Glut 2.9 2.2E+02 0.016 17.4 1.1 15 8-22 36-50 (72)
10 d1q90d_ f.32.1.1 (D:) Subunit 2.3 5.8E+02 0.042 17.6 3.0 19 174-192 85-103 (156)
No 1
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=9.79 E-value=3.5e+02 Score=20.47 Aligned_cols=63 Identities=17% Similarity=0.146 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhh
Q 023719 158 LRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 224 (278)
Q Consensus 158 l~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~ 224 (278)
+.|++..+..++....+..-.-..+.+ .-+.+.++.++++.+|.-..|++-=.+++..++.+.
T Consensus 7 ll~l~~a~~~~~~~~~~~~~~~~~a~~----~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~Fvi~ 69 (248)
T d2r6gf1 7 VLGLLGLLVGYLVVLMYAQGEYLFAIT----TLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFVLF 69 (248)
T ss_dssp HHHHHHHHHHHTHHHHHGGGCHHHHHH----HHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHcchHHHHHH----HHHHHHheEEEEEccCccceehhhhHHHHHHHHHHH
Confidence 334444444444444444444433332 234456667788888888888887777777766553
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.02 E-value=1.3e+02 Score=14.78 Aligned_cols=16 Identities=31% Similarity=0.370 Sum_probs=9.5
Q ss_pred HHHHHHHHHHhcCCCc
Q 023719 191 IMASIAARIILREKLK 206 (278)
Q Consensus 191 l~~~lla~l~l~Er~~ 206 (278)
++...+-.+|+||++.
T Consensus 13 ~i~lfffaiffreppr 28 (30)
T d2axtt1 13 IIALFFFAIFFREPPR 28 (30)
T ss_dssp HHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHhcCCCC
Confidence 3344455567788764
No 3
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=7.93 E-value=5e+02 Score=20.83 Aligned_cols=122 Identities=11% Similarity=0.003 Sum_probs=54.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCchHHHH--HHH----hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhh
Q 023719 151 HARNLLVLRALVGFLSLFSFVYSIQRLPLSQAT--VLS----FTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 224 (278)
Q Consensus 151 ~~~~~~~l~g~~~~~~~~~~~~al~~~~~~~a~--~l~----~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~ 224 (278)
+......++.++...++..|.-+-.......+. .+. ...-.++.++...+.+.|++.....-- +++|.+-+.
T Consensus 194 ~~~~~~~lG~~iLw~gW~gFN~gs~~~~~~~~~~~~~nt~~a~a~~~~~~~~~~~~~~~k~~~~~~~nG--~LaGLVait 271 (383)
T d1u7ga_ 194 HNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSG--AIAGLVGVT 271 (383)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHH--HHHHHHHHT
T ss_pred CChhhhhHHHHHHHHHHHHhccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCHHHHHHH--hhhhhhhcc
Confidence 445555566666666777666554443333222 111 122333333444456778877664432 244555554
Q ss_pred ccccccccc--hhhHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHhc
Q 023719 225 RRILTTQGR--EVSLQKLFYYAKNGFHAYVNSQVFSGETRFICAYVAIDTSKIG 276 (278)
Q Consensus 225 ~~~~~~~~~--~~~~g~l~al~~A~~~i~~r~~~~~~~~~~i~~y~~l~~~lig 276 (278)
+....-.. ....|.+.++..-...-+.++..+-+|+... +-.+.++.+.|
T Consensus 272 -a~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~~iDD~~~~-~~vHg~~Gi~G 323 (383)
T d1u7ga_ 272 -PACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDV-FGVHGVCGIVG 323 (383)
T ss_dssp -TTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCGGGH-HHHHHHHHHHH
T ss_pred -cCccccchhhHHHHHhhccHHHHHHHHHHHhhcccccccce-EeehhhhHHHH
Confidence 33222111 2334555444432233333332344555433 33344444433
No 4
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.31 E-value=2.1e+02 Score=14.91 Aligned_cols=18 Identities=17% Similarity=0.333 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 023719 90 YSGLMCMALSSTIYFFMQ 107 (278)
Q Consensus 90 ~~g~l~~l~aa~~~~~~~ 107 (278)
..|+++.+.-+++|+.++
T Consensus 18 y~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 18 YLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 458888887777777654
No 5
>d2zgwa1 b.34.1.1 (A:189-235) Biotin--[acetyl-CoA-carboxylase] ligase C-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=4.17 E-value=2e+02 Score=15.62 Aligned_cols=12 Identities=17% Similarity=0.075 Sum_probs=9.5
Q ss_pred cceEEEeecCCC
Q 023719 18 ATVELIVCNSSP 29 (278)
Q Consensus 18 ~~~~~~~~~~~~ 29 (278)
-..|.+.+|+++
T Consensus 10 g~~egiaedide 21 (47)
T d2zgwa1 10 GSFEGIAEDIDD 21 (47)
T ss_dssp SEEEEEEEEECT
T ss_pred Cceechhhhhhh
Confidence 346999999986
No 6
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]}
Probab=3.40 E-value=7.9e+02 Score=17.85 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=18.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHh
Q 023719 118 IPLFETVFMRCTVTLILSYLWLRRS 142 (278)
Q Consensus 118 ~~p~~~~~~R~~~a~l~l~~~~~~~ 142 (278)
.+..+..+..++..++++..++...
T Consensus 138 ~s~~~~~~~E~v~Tf~lv~~il~~~ 162 (254)
T d1fx8a_ 138 INFVQAFAVEMVITAILMGLILALT 162 (254)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888888888888777665543
No 7
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.39 E-value=2.6e+02 Score=16.54 Aligned_cols=21 Identities=5% Similarity=0.132 Sum_probs=12.2
Q ss_pred HhcCCchHHHHHHHHHHHHHH
Q 023719 84 VWNGSRYSGLMCMALSSTIYF 104 (278)
Q Consensus 84 ~w~~~~~~g~l~~l~aa~~~~ 104 (278)
.|+.....|++.++.+.+.--
T Consensus 23 GWGTTplMgv~m~Lf~vfl~i 43 (64)
T d2axth1 23 GWGTTPLMAVFMGLFLVFLLI 43 (64)
T ss_dssp TTTTHHHHHHHHHHHHHHHHH
T ss_pred CcCccHHHHHHHHHHHHHHHH
Confidence 366656666666665555443
No 8
>d1e12a_ f.13.1.1 (A:) Halorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=2.96 E-value=8.8e+02 Score=17.55 Aligned_cols=10 Identities=10% Similarity=0.331 Sum_probs=4.9
Q ss_pred hHHHHHHHHH
Q 023719 188 TAPIMASIAA 197 (278)
Q Consensus 188 ~~Pl~~~lla 197 (278)
+.|++..-+.
T Consensus 92 TtPLll~~l~ 101 (239)
T d1e12a_ 92 STPMILLALG 101 (239)
T ss_dssp HHHHHHHHHH
T ss_pred cccHHHHHHH
Confidence 4455554444
No 9
>d2d6fa1 b.38.3.1 (A:2-73) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=2.94 E-value=2.2e+02 Score=17.43 Aligned_cols=15 Identities=13% Similarity=0.370 Sum_probs=10.4
Q ss_pred CCCCCCCCcccceEE
Q 023719 8 TSTESSDGDQATVEL 22 (278)
Q Consensus 8 ~~~~~~~~~~~~~~~ 22 (278)
|++|++++++-++++
T Consensus 36 P~~e~sd~~~iVlKL 50 (72)
T d2d6fa1 36 DRADDADDRHIVLKL 50 (72)
T ss_dssp CCCTTSCSSEEEEEC
T ss_pred CCcccCCCCEEEEEe
Confidence 566777777776664
No 10
>d1q90d_ f.32.1.1 (D:) Subunit IV of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.30 E-value=5.8e+02 Score=17.63 Aligned_cols=19 Identities=21% Similarity=0.172 Sum_probs=9.2
Q ss_pred hhcCchHHHHHHHhhHHHH
Q 023719 174 IQRLPLSQATVLSFTAPIM 192 (278)
Q Consensus 174 l~~~~~~~a~~l~~~~Pl~ 192 (278)
++..|.-..+++.....++
T Consensus 85 LR~iP~kl~GVi~~~~~i~ 103 (156)
T d1q90d_ 85 LRVVPNKLLGVLLMAAVPA 103 (156)
T ss_dssp HHHCSCHHHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHH
Confidence 4556655555544433333
Done!