Query 023722
Match_columns 278
No_of_seqs 298 out of 1868
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 06:10:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023722.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023722hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0149 Predicted RNA-binding 99.9 1.2E-26 2.7E-31 202.0 14.3 87 14-100 4-90 (247)
2 PLN03134 glycine-rich RNA-bind 99.9 7.6E-21 1.6E-25 158.1 15.2 83 18-100 30-113 (144)
3 TIGR01659 sex-lethal sex-letha 99.8 5.9E-18 1.3E-22 159.2 15.2 83 19-101 190-275 (346)
4 TIGR01659 sex-lethal sex-letha 99.7 3.5E-17 7.5E-22 154.0 12.0 84 17-100 102-186 (346)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 8.7E-17 1.9E-21 150.3 12.7 83 20-102 267-350 (352)
6 KOG0117 Heterogeneous nuclear 99.7 4E-16 8.7E-21 146.6 14.4 97 4-108 240-338 (506)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 2.4E-16 5.3E-21 147.3 11.4 81 21-101 2-83 (352)
8 TIGR01648 hnRNP-R-Q heterogene 99.7 2.7E-15 5.9E-20 148.9 17.4 75 21-103 232-309 (578)
9 PF00076 RRM_1: RNA recognitio 99.6 7.2E-16 1.6E-20 110.4 8.6 69 25-94 1-70 (70)
10 KOG0121 Nuclear cap-binding pr 99.6 4.4E-16 9.6E-21 124.8 8.1 80 20-99 34-114 (153)
11 KOG0125 Ataxin 2-binding prote 99.6 5.5E-16 1.2E-20 141.0 9.3 90 16-107 90-180 (376)
12 KOG0122 Translation initiation 99.6 2.2E-15 4.8E-20 132.4 10.4 84 17-100 184-268 (270)
13 KOG0113 U1 small nuclear ribon 99.6 9E-15 2E-19 131.7 12.7 85 17-101 96-181 (335)
14 PF14259 RRM_6: RNA recognitio 99.6 7.8E-15 1.7E-19 106.0 8.3 69 25-94 1-70 (70)
15 KOG0107 Alternative splicing f 99.6 1.6E-14 3.5E-19 121.4 11.0 77 20-101 8-85 (195)
16 TIGR01645 half-pint poly-U bin 99.6 1.1E-14 2.3E-19 145.0 11.5 81 20-100 202-283 (612)
17 KOG0105 Alternative splicing f 99.6 1.7E-14 3.7E-19 122.3 10.9 79 20-101 4-83 (241)
18 KOG4207 Predicted splicing fac 99.6 1.1E-14 2.3E-19 125.4 9.2 85 17-101 8-93 (256)
19 PLN03120 nucleic acid binding 99.6 1.7E-14 3.7E-19 129.5 10.8 77 21-100 3-79 (260)
20 TIGR01645 half-pint poly-U bin 99.6 1.2E-14 2.7E-19 144.6 10.7 81 19-99 104-185 (612)
21 TIGR01628 PABP-1234 polyadenyl 99.5 2.9E-14 6.4E-19 141.9 11.0 76 24-99 2-78 (562)
22 KOG0148 Apoptosis-promoting RN 99.5 1.4E-13 3E-18 122.7 13.4 79 16-100 158-237 (321)
23 TIGR01628 PABP-1234 polyadenyl 99.5 3.1E-14 6.6E-19 141.7 10.3 84 19-103 282-366 (562)
24 KOG0144 RNA-binding protein CU 99.5 2.1E-14 4.5E-19 134.7 8.4 91 14-104 26-120 (510)
25 KOG0111 Cyclophilin-type pepti 99.5 1.2E-14 2.7E-19 126.1 5.5 90 16-105 4-94 (298)
26 TIGR01648 hnRNP-R-Q heterogene 99.5 5.5E-14 1.2E-18 139.6 10.5 76 20-96 56-133 (578)
27 TIGR01642 U2AF_lg U2 snRNP aux 99.5 1.5E-13 3.1E-18 134.8 12.6 82 20-101 293-375 (509)
28 KOG0148 Apoptosis-promoting RN 99.5 5.4E-14 1.2E-18 125.3 8.1 81 21-101 61-142 (321)
29 TIGR01622 SF-CC1 splicing fact 99.5 1.2E-13 2.5E-18 133.9 11.1 82 19-100 86-167 (457)
30 smart00362 RRM_2 RNA recogniti 99.5 2.2E-13 4.9E-18 96.1 9.4 71 24-96 1-72 (72)
31 smart00360 RRM RNA recognition 99.5 2.2E-13 4.9E-18 95.7 8.9 70 27-96 1-71 (71)
32 PLN03213 repressor of silencin 99.5 1.3E-13 2.9E-18 131.3 9.9 79 18-100 6-87 (759)
33 TIGR01622 SF-CC1 splicing fact 99.5 2.2E-13 4.9E-18 131.9 11.6 80 21-100 185-265 (457)
34 COG0724 RNA-binding proteins ( 99.5 3.4E-13 7.4E-18 117.8 10.2 78 22-99 115-193 (306)
35 KOG0117 Heterogeneous nuclear 99.5 2.2E-13 4.7E-18 128.4 9.3 80 20-99 81-162 (506)
36 PLN03121 nucleic acid binding 99.5 4.3E-13 9.2E-18 118.9 10.5 76 21-99 4-79 (243)
37 KOG0144 RNA-binding protein CU 99.5 7.5E-14 1.6E-18 131.0 5.8 85 20-105 122-210 (510)
38 KOG4205 RNA-binding protein mu 99.4 7.8E-14 1.7E-18 128.9 5.8 86 21-106 5-90 (311)
39 KOG0131 Splicing factor 3b, su 99.4 4.4E-13 9.6E-18 113.4 7.1 82 18-99 5-87 (203)
40 KOG0145 RNA-binding protein EL 99.4 8.7E-13 1.9E-17 117.2 8.8 84 19-102 38-122 (360)
41 cd00590 RRM RRM (RNA recogniti 99.4 2.7E-12 5.9E-17 90.9 9.9 73 24-97 1-74 (74)
42 KOG0108 mRNA cleavage and poly 99.4 8.5E-13 1.8E-17 126.9 8.9 82 23-104 19-101 (435)
43 KOG4205 RNA-binding protein mu 99.4 5.3E-12 1.1E-16 116.8 13.7 86 21-106 96-181 (311)
44 KOG0116 RasGAP SH3 binding pro 99.4 4E-12 8.7E-17 121.7 12.7 85 20-104 286-370 (419)
45 KOG4212 RNA-binding protein hn 99.4 3.5E-12 7.6E-17 120.1 11.4 86 20-106 42-129 (608)
46 KOG0109 RNA-binding protein LA 99.4 9.6E-13 2.1E-17 118.4 6.6 71 23-101 3-74 (346)
47 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 4.9E-12 1.1E-16 124.1 12.1 78 19-101 272-351 (481)
48 KOG0130 RNA-binding protein RB 99.4 3.1E-12 6.6E-17 103.7 8.3 86 16-101 66-152 (170)
49 KOG0126 Predicted RNA-binding 99.3 1.4E-13 3E-18 116.5 0.4 80 20-99 33-113 (219)
50 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 5.9E-12 1.3E-16 123.5 11.1 74 22-101 2-78 (481)
51 KOG0127 Nucleolar protein fibr 99.3 5.9E-12 1.3E-16 121.3 8.8 85 18-102 288-379 (678)
52 smart00361 RRM_1 RNA recogniti 99.3 1.8E-11 3.9E-16 89.2 8.0 60 36-95 2-69 (70)
53 KOG0127 Nucleolar protein fibr 99.2 2.3E-11 4.9E-16 117.3 8.6 81 22-103 117-198 (678)
54 PF13893 RRM_5: RNA recognitio 99.2 1.1E-10 2.5E-15 80.9 7.8 55 39-98 1-56 (56)
55 KOG0415 Predicted peptidyl pro 99.2 3.5E-11 7.5E-16 111.0 6.4 82 19-100 236-318 (479)
56 KOG0146 RNA-binding protein ET 99.2 3E-11 6.4E-16 107.9 5.7 86 16-101 279-365 (371)
57 KOG0114 Predicted RNA-binding 99.2 1.6E-10 3.4E-15 89.8 8.8 80 18-100 14-94 (124)
58 KOG0146 RNA-binding protein ET 99.2 5E-11 1.1E-15 106.4 6.3 84 21-105 18-105 (371)
59 KOG0109 RNA-binding protein LA 99.2 4.8E-11 1.1E-15 107.5 6.0 81 18-106 74-155 (346)
60 KOG0153 Predicted RNA-binding 99.1 1.3E-10 2.7E-15 107.0 8.6 81 14-100 220-302 (377)
61 KOG0124 Polypyrimidine tract-b 99.1 3.6E-11 7.8E-16 111.2 4.5 80 20-99 111-191 (544)
62 KOG0147 Transcriptional coacti 99.1 7.5E-11 1.6E-15 113.8 6.5 82 20-101 276-358 (549)
63 KOG0131 Splicing factor 3b, su 99.1 1E-10 2.2E-15 99.2 6.4 80 21-100 95-176 (203)
64 KOG0123 Polyadenylate-binding 99.1 2.5E-10 5.4E-15 108.5 9.4 83 22-107 76-159 (369)
65 TIGR01642 U2AF_lg U2 snRNP aux 99.0 6.9E-10 1.5E-14 108.9 8.8 76 16-98 169-257 (509)
66 KOG0145 RNA-binding protein EL 99.0 1.5E-09 3.3E-14 96.7 9.2 85 16-100 272-357 (360)
67 KOG4661 Hsp27-ERE-TATA-binding 99.0 1.7E-09 3.7E-14 104.9 8.9 83 20-102 403-486 (940)
68 KOG4208 Nucleolar RNA-binding 99.0 3E-09 6.4E-14 91.9 8.7 86 16-101 43-130 (214)
69 KOG0132 RNA polymerase II C-te 98.9 2.1E-09 4.5E-14 107.4 8.4 77 19-101 418-495 (894)
70 KOG0124 Polypyrimidine tract-b 98.9 2.6E-09 5.6E-14 99.1 7.0 83 18-100 206-289 (544)
71 KOG0226 RNA-binding proteins [ 98.9 1.4E-09 3E-14 96.6 4.4 83 17-99 185-268 (290)
72 KOG4212 RNA-binding protein hn 98.9 3.7E-09 8.1E-14 99.9 7.1 75 18-97 532-607 (608)
73 KOG0533 RRM motif-containing p 98.9 9.6E-09 2.1E-13 92.0 9.2 86 18-104 79-165 (243)
74 KOG4206 Spliceosomal protein s 98.9 1E-08 2.2E-13 89.7 9.0 81 19-102 6-91 (221)
75 KOG0110 RNA-binding protein (R 98.9 6E-09 1.3E-13 103.4 8.3 80 20-99 513-596 (725)
76 KOG1457 RNA binding protein (c 98.9 2E-08 4.3E-13 87.9 10.2 90 17-106 29-123 (284)
77 KOG0110 RNA-binding protein (R 98.8 3.1E-09 6.7E-14 105.4 4.8 83 19-101 610-693 (725)
78 KOG4209 Splicing factor RNPS1, 98.8 9.9E-09 2.1E-13 91.7 7.5 85 16-101 95-180 (231)
79 KOG4849 mRNA cleavage factor I 98.8 3.4E-07 7.4E-12 84.8 16.7 76 21-96 79-157 (498)
80 KOG0123 Polyadenylate-binding 98.7 3.2E-08 6.9E-13 94.2 8.4 72 23-100 2-74 (369)
81 KOG4211 Splicing factor hnRNP- 98.7 6.1E-08 1.3E-12 93.0 8.9 80 18-100 6-85 (510)
82 KOG1548 Transcription elongati 98.6 1.5E-07 3.2E-12 87.0 9.3 84 17-101 129-221 (382)
83 KOG4454 RNA binding protein (R 98.6 2.3E-08 4.9E-13 87.3 2.1 78 21-100 8-86 (267)
84 KOG1995 Conserved Zn-finger pr 98.6 2E-07 4.4E-12 86.5 8.1 87 16-102 60-155 (351)
85 KOG4660 Protein Mei2, essentia 98.5 6.3E-08 1.4E-12 94.0 4.2 72 18-94 71-143 (549)
86 KOG0106 Alternative splicing f 98.5 8.7E-08 1.9E-12 84.3 4.1 69 23-99 2-71 (216)
87 PF04059 RRM_2: RNA recognitio 98.3 3.7E-06 8.1E-11 65.3 9.1 78 23-100 2-86 (97)
88 KOG0151 Predicted splicing reg 98.1 3.9E-06 8.5E-11 83.7 6.7 82 18-99 170-255 (877)
89 KOG0120 Splicing factor U2AF, 98.1 3.1E-06 6.7E-11 82.7 5.4 90 14-103 281-371 (500)
90 KOG4211 Splicing factor hnRNP- 98.1 8.7E-06 1.9E-10 78.4 7.8 80 20-100 101-181 (510)
91 PF11608 Limkain-b1: Limkain b 98.0 2.8E-05 6.1E-10 58.5 7.7 67 23-99 3-75 (90)
92 KOG4210 Nuclear localization s 98.0 7.6E-06 1.7E-10 75.4 5.0 81 19-99 181-262 (285)
93 KOG1190 Polypyrimidine tract-b 98.0 6.3E-05 1.4E-09 71.2 10.9 73 22-99 297-371 (492)
94 KOG0147 Transcriptional coacti 98.0 2.1E-06 4.6E-11 83.5 0.8 85 17-101 174-258 (549)
95 PF08777 RRM_3: RNA binding mo 97.8 3.4E-05 7.4E-10 60.8 5.4 70 23-98 2-77 (105)
96 KOG0106 Alternative splicing f 97.8 1.3E-05 2.9E-10 70.6 3.1 73 18-98 95-168 (216)
97 PF14605 Nup35_RRM_2: Nup53/35 97.7 8.3E-05 1.8E-09 51.3 5.4 52 23-81 2-53 (53)
98 KOG0129 Predicted RNA-binding 97.7 0.00016 3.5E-09 70.3 8.4 69 16-84 364-433 (520)
99 KOG1855 Predicted RNA-binding 97.6 7.5E-05 1.6E-09 71.0 5.1 70 18-87 227-309 (484)
100 KOG1190 Polypyrimidine tract-b 97.6 6.2E-05 1.3E-09 71.3 4.1 73 21-99 27-102 (492)
101 KOG1457 RNA binding protein (c 97.5 0.0001 2.2E-09 65.0 4.1 63 19-85 207-269 (284)
102 KOG1456 Heterogeneous nuclear 97.4 0.00083 1.8E-08 63.2 9.2 81 14-99 279-361 (494)
103 COG5175 MOT2 Transcriptional r 97.4 0.00037 8.1E-09 64.7 6.7 77 23-99 115-201 (480)
104 KOG0129 Predicted RNA-binding 97.4 0.00061 1.3E-08 66.3 8.4 68 16-84 253-326 (520)
105 PF05172 Nup35_RRM: Nup53/35/4 97.4 0.00076 1.7E-08 52.7 7.1 79 20-99 4-90 (100)
106 KOG4307 RNA binding protein RB 97.3 0.00065 1.4E-08 68.2 7.8 83 15-97 860-943 (944)
107 KOG4206 Spliceosomal protein s 97.2 0.0012 2.6E-08 58.2 7.5 75 19-98 143-219 (221)
108 PF10309 DUF2414: Protein of u 97.2 0.0019 4.2E-08 46.0 7.2 58 19-84 2-62 (62)
109 KOG0105 Alternative splicing f 97.0 0.0079 1.7E-07 51.9 10.4 63 16-85 109-171 (241)
110 KOG2314 Translation initiation 97.0 0.002 4.3E-08 63.5 7.6 79 20-99 56-142 (698)
111 KOG1548 Transcription elongati 96.8 0.0058 1.3E-07 57.1 8.0 80 17-100 260-351 (382)
112 KOG3152 TBP-binding protein, a 96.8 0.0013 2.8E-08 59.1 3.5 72 21-92 73-157 (278)
113 KOG0120 Splicing factor U2AF, 96.7 0.0041 8.9E-08 61.2 7.3 62 38-99 425-490 (500)
114 PF08952 DUF1866: Domain of un 96.6 0.0075 1.6E-07 50.1 7.1 56 38-101 52-107 (146)
115 KOG1365 RNA-binding protein Fu 96.6 0.0031 6.8E-08 59.6 4.9 77 23-100 281-361 (508)
116 KOG0128 RNA-binding protein SA 96.4 0.0019 4.2E-08 66.2 2.4 78 22-100 736-814 (881)
117 KOG4676 Splicing factor, argin 96.3 0.0053 1.2E-07 58.2 5.0 79 20-98 5-86 (479)
118 KOG1365 RNA-binding protein Fu 96.3 0.003 6.4E-08 59.8 3.1 77 21-98 160-240 (508)
119 KOG2193 IGF-II mRNA-binding pr 96.2 0.0027 5.9E-08 60.6 2.6 77 23-106 2-81 (584)
120 KOG2202 U2 snRNP splicing fact 96.1 0.003 6.5E-08 56.8 2.0 62 37-99 83-146 (260)
121 KOG1456 Heterogeneous nuclear 96.1 0.013 2.9E-07 55.3 6.3 83 12-100 21-106 (494)
122 PF15023 DUF4523: Protein of u 96.0 0.039 8.4E-07 45.8 7.9 77 16-99 80-160 (166)
123 KOG0115 RNA-binding protein p5 96.0 0.0071 1.5E-07 54.4 3.7 62 23-85 32-93 (275)
124 KOG0128 RNA-binding protein SA 95.9 0.00034 7.4E-09 71.5 -5.3 71 20-90 665-735 (881)
125 KOG4307 RNA binding protein RB 95.8 0.01 2.2E-07 59.9 4.1 83 15-98 427-511 (944)
126 KOG1996 mRNA splicing factor [ 95.6 0.042 9.2E-07 50.5 7.0 63 36-98 300-364 (378)
127 KOG2591 c-Mpl binding protein, 95.3 0.027 5.9E-07 55.6 5.3 74 18-98 171-249 (684)
128 KOG0112 Large RNA-binding prot 94.9 0.0059 1.3E-07 63.0 -0.5 78 20-98 370-448 (975)
129 KOG0112 Large RNA-binding prot 94.9 0.033 7.2E-07 57.7 4.7 78 18-101 451-531 (975)
130 KOG4285 Mitotic phosphoprotein 94.8 0.13 2.7E-06 47.6 7.8 72 22-100 197-269 (350)
131 PF03880 DbpA: DbpA RNA bindin 94.7 0.16 3.5E-06 37.1 6.8 66 24-98 2-74 (74)
132 KOG2416 Acinus (induces apopto 94.4 0.051 1.1E-06 54.1 4.5 76 18-99 440-520 (718)
133 KOG4210 Nuclear localization s 94.1 0.038 8.1E-07 51.1 2.8 80 20-99 86-166 (285)
134 KOG2068 MOT2 transcription fac 93.8 0.026 5.6E-07 52.6 1.0 80 21-100 76-162 (327)
135 KOG2135 Proteins containing th 93.2 0.068 1.5E-06 51.9 3.0 71 24-100 374-445 (526)
136 PF08675 RNA_bind: RNA binding 93.2 0.28 6E-06 37.1 5.5 56 21-85 8-63 (87)
137 KOG2253 U1 snRNP complex, subu 92.7 0.098 2.1E-06 52.7 3.3 73 17-98 35-108 (668)
138 PF03467 Smg4_UPF3: Smg-4/UPF3 92.2 0.12 2.6E-06 44.4 2.8 81 19-99 4-96 (176)
139 PF07576 BRAP2: BRCA1-associat 90.8 2.4 5.3E-05 33.6 8.8 62 22-85 13-75 (110)
140 PF04847 Calcipressin: Calcipr 90.6 0.84 1.8E-05 39.5 6.5 61 34-100 7-70 (184)
141 KOG0921 Dosage compensation co 89.8 1.6 3.5E-05 46.2 8.7 7 126-132 1189-1195(1282)
142 KOG4660 Protein Mei2, essentia 87.7 0.98 2.1E-05 44.9 5.3 54 47-100 414-472 (549)
143 KOG4574 RNA-binding protein (c 86.6 0.47 1E-05 49.3 2.5 71 24-100 300-373 (1007)
144 PRK11634 ATP-dependent RNA hel 85.0 13 0.00027 38.3 12.0 69 22-99 486-561 (629)
145 KOG4410 5-formyltetrahydrofola 82.4 4.5 9.9E-05 37.4 6.7 47 22-74 330-377 (396)
146 smart00596 PRE_C2HC PRE_C2HC d 80.6 3.6 7.9E-05 29.9 4.3 59 37-98 2-62 (69)
147 PF11767 SET_assoc: Histone ly 79.2 9.8 0.00021 27.4 6.3 53 33-94 11-64 (66)
148 PF07530 PRE_C2HC: Associated 79.2 5.3 0.00011 28.8 4.9 60 37-99 2-63 (68)
149 KOG4676 Splicing factor, argin 77.6 0.3 6.5E-06 46.7 -2.6 63 23-89 152-214 (479)
150 PF10567 Nab6_mRNP_bdg: RNA-re 77.2 6.3 0.00014 36.5 5.9 81 20-100 13-107 (309)
151 KOG4454 RNA binding protein (R 76.5 0.55 1.2E-05 41.7 -1.1 69 15-84 73-145 (267)
152 KOG4483 Uncharacterized conser 74.7 8.1 0.00018 37.3 6.1 60 18-84 387-447 (528)
153 PRK14548 50S ribosomal protein 68.7 20 0.00042 27.1 5.9 56 26-84 24-81 (84)
154 KOG0804 Cytoplasmic Zn-finger 66.8 21 0.00045 35.1 7.0 62 22-85 74-136 (493)
155 KOG2193 IGF-II mRNA-binding pr 63.7 1 2.2E-05 43.6 -2.4 76 20-99 78-155 (584)
156 PF08206 OB_RNB: Ribonuclease 60.4 2 4.2E-05 29.9 -0.8 37 63-99 7-44 (58)
157 PF03468 XS: XS domain; Inter 59.3 23 0.00049 28.3 5.0 47 34-83 29-76 (116)
158 PF15063 TC1: Thyroid cancer p 56.8 6.7 0.00015 29.0 1.4 69 4-84 7-78 (79)
159 COG0724 RNA-binding proteins ( 54.7 18 0.0004 30.7 4.1 57 16-72 219-275 (306)
160 KOG4365 Uncharacterized conser 54.6 2 4.4E-05 41.8 -2.0 76 23-99 4-80 (572)
161 KOG4019 Calcineurin-mediated s 53.9 13 0.00028 32.2 2.9 75 20-100 8-89 (193)
162 TIGR03636 L23_arch archaeal ri 52.7 64 0.0014 23.9 6.1 56 25-83 16-73 (77)
163 KOG2891 Surface glycoprotein [ 50.1 17 0.00036 33.7 3.2 35 21-55 148-194 (445)
164 KOG2295 C2H2 Zn-finger protein 47.2 3.8 8.2E-05 41.0 -1.5 66 20-85 229-294 (648)
165 PF15513 DUF4651: Domain of un 46.2 45 0.00098 23.7 4.2 19 37-55 9-27 (62)
166 PRK11901 hypothetical protein; 44.9 28 0.0006 32.8 3.8 63 21-88 244-308 (327)
167 PF00403 HMA: Heavy-metal-asso 43.8 99 0.0021 20.8 6.8 55 24-84 1-59 (62)
168 PF02714 DUF221: Domain of unk 43.7 28 0.00061 32.0 3.8 32 67-99 1-32 (325)
169 PRK10629 EnvZ/OmpR regulon mod 43.2 1.8E+02 0.0039 23.6 7.9 69 23-99 36-109 (127)
170 PF07292 NID: Nmi/IFP 35 domai 40.8 11 0.00024 28.7 0.5 26 18-43 48-73 (88)
171 KOG2318 Uncharacterized conser 40.4 42 0.00091 34.0 4.5 80 19-98 171-305 (650)
172 PF07292 NID: Nmi/IFP 35 domai 39.9 37 0.0008 25.8 3.2 32 67-98 1-34 (88)
173 KOG4008 rRNA processing protei 37.5 22 0.00049 32.0 1.9 36 17-52 35-70 (261)
174 COG5193 LHP1 La protein, small 37.1 14 0.0003 35.7 0.6 64 19-82 171-244 (438)
175 CHL00123 rps6 ribosomal protei 36.7 1.7E+02 0.0036 22.4 6.5 61 22-84 8-82 (97)
176 COG4010 Uncharacterized protei 36.6 97 0.0021 26.0 5.3 47 29-85 118-164 (170)
177 PF04026 SpoVG: SpoVG; InterP 34.8 68 0.0015 24.1 3.9 26 48-73 2-27 (84)
178 PF09707 Cas_Cas2CT1978: CRISP 33.8 88 0.0019 23.7 4.4 48 22-72 25-72 (86)
179 PF01071 GARS_A: Phosphoribosy 32.5 1.5E+02 0.0033 25.8 6.3 47 34-84 24-70 (194)
180 PF07876 Dabb: Stress responsi 30.9 2E+02 0.0044 21.0 6.1 57 25-81 4-71 (97)
181 KOG4213 RNA-binding protein La 30.7 65 0.0014 28.0 3.6 51 34-84 118-170 (205)
182 PF11411 DNA_ligase_IV: DNA li 30.4 37 0.00079 21.5 1.5 16 32-47 19-34 (36)
183 PF14401 RLAN: RimK-like ATPgr 29.5 1.1E+02 0.0023 25.7 4.7 63 18-80 83-146 (153)
184 PRK11558 putative ssRNA endonu 29.0 97 0.0021 24.0 4.0 50 22-74 27-76 (97)
185 COG5638 Uncharacterized conser 28.9 80 0.0017 30.9 4.2 42 15-56 139-185 (622)
186 PF08734 GYD: GYD domain; Int 28.9 2.3E+02 0.0049 21.3 6.0 45 36-84 22-67 (91)
187 PF03439 Spt5-NGN: Early trans 28.5 74 0.0016 23.6 3.2 25 63-87 43-67 (84)
188 PRK06737 acetolactate synthase 28.1 2.5E+02 0.0053 20.7 7.2 65 24-91 6-71 (76)
189 COG5353 Uncharacterized protei 27.9 2.8E+02 0.006 23.4 6.7 55 23-77 88-155 (161)
190 KOG3432 Vacuolar H+-ATPase V1 27.8 93 0.002 24.8 3.7 33 21-55 34-66 (121)
191 PRK11152 ilvM acetolactate syn 26.2 2.7E+02 0.0058 20.4 6.4 68 24-95 7-75 (76)
192 PRK13259 regulatory protein Sp 24.8 1.1E+02 0.0025 23.5 3.7 26 48-73 2-27 (94)
193 PRK10905 cell division protein 24.7 74 0.0016 30.0 3.1 62 23-89 248-311 (328)
194 PF13046 DUF3906: Protein of u 24.1 74 0.0016 22.8 2.3 34 34-69 30-63 (64)
195 COG2608 CopZ Copper chaperone 23.9 2.4E+02 0.0052 20.0 5.2 56 23-84 4-63 (71)
196 PF14893 PNMA: PNMA 23.5 81 0.0018 29.9 3.2 28 18-45 14-41 (331)
197 PF09869 DUF2096: Uncharacteri 23.5 2.5E+02 0.0054 24.0 5.8 47 29-85 118-164 (169)
198 KOG3424 40S ribosomal protein 23.1 1.6E+02 0.0035 23.8 4.3 44 33-77 34-82 (132)
199 PF00276 Ribosomal_L23: Riboso 23.0 93 0.002 23.5 2.9 30 26-55 23-54 (91)
200 PLN03134 glycine-rich RNA-bind 22.9 2.1E+02 0.0045 23.4 5.2 6 88-93 96-101 (144)
201 PF05189 RTC_insert: RNA 3'-te 22.7 1.2E+02 0.0027 23.0 3.7 48 25-72 13-65 (103)
202 PRK08559 nusG transcription an 22.7 2.8E+02 0.006 22.9 6.0 33 49-86 36-68 (153)
203 KOG0156 Cytochrome P450 CYP2 s 22.5 1.8E+02 0.0039 28.9 5.6 59 26-93 36-97 (489)
204 PHA01632 hypothetical protein 21.3 98 0.0021 21.6 2.4 19 27-45 21-39 (64)
205 PF13037 DUF3898: Domain of un 20.5 85 0.0018 23.9 2.2 52 33-84 30-89 (91)
206 PF13721 SecD-TM1: SecD export 20.4 2.8E+02 0.0061 21.3 5.2 46 37-90 49-95 (101)
207 cd04908 ACT_Bt0572_1 N-termina 20.3 2.9E+02 0.0063 18.7 8.4 47 35-85 14-61 (66)
No 1
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.94 E-value=1.2e-26 Score=202.02 Aligned_cols=87 Identities=76% Similarity=1.283 Sum_probs=84.7
Q ss_pred CCCCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeEE
Q 023722 14 AGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRA 93 (278)
Q Consensus 14 ~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i 93 (278)
..++.|++.+|||||+|+|++++|+|+++|++||+|++++|+.||.|+|+|||+||+|+|.++|++||++.|.+||||+.
T Consensus 4 ~~~~~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~a 83 (247)
T KOG0149|consen 4 NNPFGDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKA 83 (247)
T ss_pred CCCCCCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCccccccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccc
Q 023722 94 NCNLACL 100 (278)
Q Consensus 94 ~V~~a~~ 100 (278)
+|++|..
T Consensus 84 NcnlA~l 90 (247)
T KOG0149|consen 84 NCNLASL 90 (247)
T ss_pred ccchhhh
Confidence 9999987
No 2
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.86 E-value=7.6e-21 Score=158.06 Aligned_cols=83 Identities=37% Similarity=0.682 Sum_probs=77.9
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~ 96 (278)
.....++|||+||+++++|++|+++|++||+|++|+|++|+.|+++||||||+|++.++|++||+.++ ++|+|++|+|+
T Consensus 30 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 30 LRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999986 77999999999
Q ss_pred Eccc
Q 023722 97 LACL 100 (278)
Q Consensus 97 ~a~~ 100 (278)
++..
T Consensus 110 ~a~~ 113 (144)
T PLN03134 110 PAND 113 (144)
T ss_pred eCCc
Confidence 9864
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.77 E-value=5.9e-18 Score=159.23 Aligned_cols=83 Identities=24% Similarity=0.429 Sum_probs=75.5
Q ss_pred CCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCC--eEEEE
Q 023722 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDG--RRANC 95 (278)
Q Consensus 19 ~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G--r~i~V 95 (278)
+.+.++|||+||+++++|++|+++|++||+|++|+|++|+.++++||||||+|+++++|++||+.++ .+|++ ++|+|
T Consensus 190 ~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V 269 (346)
T TIGR01659 190 SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTV 269 (346)
T ss_pred ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEE
Confidence 4457889999999999999999999999999999999999999999999999999999999999997 45655 78999
Q ss_pred EEcccC
Q 023722 96 NLACLG 101 (278)
Q Consensus 96 ~~a~~~ 101 (278)
++++..
T Consensus 270 ~~a~~~ 275 (346)
T TIGR01659 270 RLAEEH 275 (346)
T ss_pred EECCcc
Confidence 998644
No 4
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.72 E-value=3.5e-17 Score=154.05 Aligned_cols=84 Identities=21% Similarity=0.290 Sum_probs=79.0
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V 95 (278)
.++...++|||+|||+++||++|+++|++||+|++|+|++|+.|+++||||||+|.|+++|++||++++ .+|.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 466678999999999999999999999999999999999999999999999999999999999999997 6699999999
Q ss_pred EEccc
Q 023722 96 NLACL 100 (278)
Q Consensus 96 ~~a~~ 100 (278)
.+++.
T Consensus 182 ~~a~p 186 (346)
T TIGR01659 182 SYARP 186 (346)
T ss_pred ecccc
Confidence 98864
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.71 E-value=8.7e-17 Score=150.33 Aligned_cols=83 Identities=23% Similarity=0.338 Sum_probs=77.1
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a 98 (278)
...++|||+||+++++|++|+++|++||.|++|+|++|+.|+++||||||+|.+.++|.+||+.+| .+|+||+|+|.++
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 444579999999999999999999999999999999999999999999999999999999999997 5699999999999
Q ss_pred ccCC
Q 023722 99 CLGV 102 (278)
Q Consensus 99 ~~~~ 102 (278)
..+.
T Consensus 347 ~~~~ 350 (352)
T TIGR01661 347 TNKA 350 (352)
T ss_pred cCCC
Confidence 6543
No 6
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=4e-16 Score=146.64 Aligned_cols=97 Identities=26% Similarity=0.307 Sum_probs=81.6
Q ss_pred CcchhhhhccCCCC-CCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHH
Q 023722 4 PVSAQAAAAGAGQF-GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV 82 (278)
Q Consensus 4 p~~~~~~~~~~~~~-~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~ 82 (278)
+++.|+.+...... .-.+++.|||+||+.++|||.|+++|++||+|++|+.++| ||||+|.++++|.+|++
T Consensus 240 ~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~ 311 (506)
T KOG0117|consen 240 ITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMK 311 (506)
T ss_pred ceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHH
Confidence 45566555332211 2246889999999999999999999999999999999877 99999999999999999
Q ss_pred hcC-CccCCeEEEEEEcccCCCCCCCC
Q 023722 83 DAA-PVIDGRRANCNLACLGVQRSKPS 108 (278)
Q Consensus 83 ~~~-~~i~Gr~i~V~~a~~~~~~~~~~ 108 (278)
++| ++|+|..|+|.+|++..++++.+
T Consensus 312 ~~ngkeldG~~iEvtLAKP~~k~k~~r 338 (506)
T KOG0117|consen 312 ETNGKELDGSPIEVTLAKPVDKKKKER 338 (506)
T ss_pred HhcCceecCceEEEEecCChhhhccch
Confidence 998 77999999999999877766554
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.68 E-value=2.4e-16 Score=147.28 Aligned_cols=81 Identities=30% Similarity=0.440 Sum_probs=76.2
Q ss_pred CccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcc
Q 023722 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLAC 99 (278)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a~ 99 (278)
..++|||+|||.+++|++|+++|++||+|++|+|++|+.++++||||||+|.+.++|++||+.++ ..|.|++|+|++++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46899999999999999999999999999999999999999999999999999999999999997 56999999999986
Q ss_pred cC
Q 023722 100 LG 101 (278)
Q Consensus 100 ~~ 101 (278)
+.
T Consensus 82 ~~ 83 (352)
T TIGR01661 82 PS 83 (352)
T ss_pred cc
Confidence 44
No 8
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.66 E-value=2.7e-15 Score=148.86 Aligned_cols=75 Identities=28% Similarity=0.403 Sum_probs=68.3
Q ss_pred CccEEEECCCCCCCCHHHHHHHHHhc--CCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 023722 21 TYTKVFVGGLAWETQKETMEKYFEQF--GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNL 97 (278)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~f--G~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~ 97 (278)
+.++|||+||+++++||+|+++|++| |+|++|++++ +||||+|+++++|++||+.+| .+|+|++|+|++
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 46889999999999999999999999 9999998764 499999999999999999997 679999999999
Q ss_pred cccCCC
Q 023722 98 ACLGVQ 103 (278)
Q Consensus 98 a~~~~~ 103 (278)
+++...
T Consensus 304 Akp~~~ 309 (578)
T TIGR01648 304 AKPVDK 309 (578)
T ss_pred ccCCCc
Confidence 976543
No 9
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.65 E-value=7.2e-16 Score=110.41 Aligned_cols=69 Identities=36% Similarity=0.669 Sum_probs=65.0
Q ss_pred EEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 023722 25 VFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (278)
Q Consensus 25 lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~ 94 (278)
|||+|||+++++++|+++|++||.|+.+++..+ .+++++++|||+|.+.++|++|++.++ .+|+|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 678999999999999999999999986 669999885
No 10
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=4.4e-16 Score=124.80 Aligned_cols=80 Identities=21% Similarity=0.342 Sum_probs=76.0
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a 98 (278)
.++++|||+||..-++||+|.++|+++|+|++|.+-.|+.+..+.|||||+|.+.++|+.|++.++ ..|+.+.|++.+.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 568999999999999999999999999999999999999999999999999999999999999997 5699999999987
Q ss_pred c
Q 023722 99 C 99 (278)
Q Consensus 99 ~ 99 (278)
-
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 3
No 11
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=5.5e-16 Score=141.00 Aligned_cols=90 Identities=28% Similarity=0.512 Sum_probs=80.6
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~ 94 (278)
+...++.++|+|.|||+...|-||+.+|++||+|++|+|+.+. .-||||+||+|++.+||++|-++++ .+|.||+|+
T Consensus 90 s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIE 167 (376)
T KOG0125|consen 90 SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIE 167 (376)
T ss_pred CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEE
Confidence 4456678999999999999999999999999999999999874 4689999999999999999999997 669999999
Q ss_pred EEEcccCCCCCCC
Q 023722 95 CNLACLGVQRSKP 107 (278)
Q Consensus 95 V~~a~~~~~~~~~ 107 (278)
|+.|..++..+|.
T Consensus 168 Vn~ATarV~n~K~ 180 (376)
T KOG0125|consen 168 VNNATARVHNKKK 180 (376)
T ss_pred EeccchhhccCCc
Confidence 9999877665544
No 12
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=2.2e-15 Score=132.40 Aligned_cols=84 Identities=27% Similarity=0.364 Sum_probs=79.1
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCeEEEE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANC 95 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~Gr~i~V 95 (278)
.+..+..+|-|.||+++++|++|++||.+||.|.+|.|.+||+||.+||||||+|.++++|.+||+.||.. .+.-.|+|
T Consensus 184 R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrv 263 (270)
T KOG0122|consen 184 RERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRV 263 (270)
T ss_pred ccCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEE
Confidence 45668889999999999999999999999999999999999999999999999999999999999999855 89999999
Q ss_pred EEccc
Q 023722 96 NLACL 100 (278)
Q Consensus 96 ~~a~~ 100 (278)
+++++
T Consensus 264 EwskP 268 (270)
T KOG0122|consen 264 EWSKP 268 (270)
T ss_pred EecCC
Confidence 99965
No 13
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=9e-15 Score=131.70 Aligned_cols=85 Identities=31% Similarity=0.517 Sum_probs=78.8
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V 95 (278)
..++..++|||+-|+.+++|.+|++.|++||.|+.|.|+.|+.|+++||||||+|+++.+...|.+... .+|+|++|.|
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 344789999999999999999999999999999999999999999999999999999999999999997 5699999999
Q ss_pred EEcccC
Q 023722 96 NLACLG 101 (278)
Q Consensus 96 ~~a~~~ 101 (278)
......
T Consensus 176 DvERgR 181 (335)
T KOG0113|consen 176 DVERGR 181 (335)
T ss_pred Eecccc
Confidence 887543
No 14
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.58 E-value=7.8e-15 Score=106.03 Aligned_cols=69 Identities=32% Similarity=0.592 Sum_probs=63.8
Q ss_pred EEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 023722 25 VFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (278)
Q Consensus 25 lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~ 94 (278)
|||+|||+++++++|+++|+.+|.|.++++.+++. ++.+++|||+|.+.++|++|++.++ ..|+|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999987 8999999999999999999999998 679999875
No 15
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=1.6e-14 Score=121.39 Aligned_cols=77 Identities=29% Similarity=0.447 Sum_probs=70.6
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a 98 (278)
.-.++||||||+..+++.||+.+|.+||.|..|.|-.. +.|||||||+|+.+|++|+..|+ +.|+|.+|+|++.
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 34799999999999999999999999999999999775 47999999999999999999998 6799999999998
Q ss_pred ccC
Q 023722 99 CLG 101 (278)
Q Consensus 99 ~~~ 101 (278)
...
T Consensus 83 ~G~ 85 (195)
T KOG0107|consen 83 TGR 85 (195)
T ss_pred cCC
Confidence 643
No 16
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.57 E-value=1.1e-14 Score=145.04 Aligned_cols=81 Identities=17% Similarity=0.387 Sum_probs=76.5
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a 98 (278)
...++|||+||++++++++|+++|++||+|++|+|.+|+.++++||||||+|.+.++|.+||+.+| .+|+|+.|+|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 456899999999999999999999999999999999999999999999999999999999999998 5699999999998
Q ss_pred cc
Q 023722 99 CL 100 (278)
Q Consensus 99 ~~ 100 (278)
..
T Consensus 282 i~ 283 (612)
T TIGR01645 282 VT 283 (612)
T ss_pred CC
Confidence 64
No 17
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=1.7e-14 Score=122.34 Aligned_cols=79 Identities=23% Similarity=0.395 Sum_probs=69.8
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeEEEEEEc
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLA 98 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~-~i~Gr~i~V~~a 98 (278)
...++|||+|||.++.|.+|+++|.|||.|.+|+|... -....||||+|+|+.+|+.||..-+. .++|.+|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 45789999999999999999999999999999998543 34567999999999999999999874 599999999998
Q ss_pred ccC
Q 023722 99 CLG 101 (278)
Q Consensus 99 ~~~ 101 (278)
...
T Consensus 81 rgg 83 (241)
T KOG0105|consen 81 RGG 83 (241)
T ss_pred cCC
Confidence 543
No 18
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.57 E-value=1.1e-14 Score=125.41 Aligned_cols=85 Identities=26% Similarity=0.455 Sum_probs=79.1
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V 95 (278)
-+-+..++|-|-||...++.++|+.+|++||.|-+|.|++|+.|..++||+||.|.+..+|++|++.|+ .+|+|+.|.|
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 344567899999999999999999999999999999999999999999999999999999999999997 6799999999
Q ss_pred EEcccC
Q 023722 96 NLACLG 101 (278)
Q Consensus 96 ~~a~~~ 101 (278)
.+|+-.
T Consensus 88 q~aryg 93 (256)
T KOG4207|consen 88 QMARYG 93 (256)
T ss_pred hhhhcC
Confidence 999744
No 19
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.56 E-value=1.7e-14 Score=129.47 Aligned_cols=77 Identities=17% Similarity=0.261 Sum_probs=69.9
Q ss_pred CccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEccc
Q 023722 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (278)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i~V~~a~~ 100 (278)
..++|||+||+++++|++|+++|+.||+|++|+|++|+. ++|||||+|+++++|++||...+..|.|+.|+|..+..
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 358999999999999999999999999999999999864 57899999999999999997445789999999999853
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.56 E-value=1.2e-14 Score=144.62 Aligned_cols=81 Identities=30% Similarity=0.534 Sum_probs=75.7
Q ss_pred CCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 023722 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNL 97 (278)
Q Consensus 19 ~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~ 97 (278)
....++|||+||+++++|++|+++|++||+|++|+|++|+.|+++||||||+|.+.++|++||+.+| .+|+||+|+|..
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 3567899999999999999999999999999999999999999999999999999999999999997 569999999986
Q ss_pred cc
Q 023722 98 AC 99 (278)
Q Consensus 98 a~ 99 (278)
..
T Consensus 184 p~ 185 (612)
T TIGR01645 184 PS 185 (612)
T ss_pred cc
Confidence 53
No 21
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.54 E-value=2.9e-14 Score=141.86 Aligned_cols=76 Identities=28% Similarity=0.487 Sum_probs=72.7
Q ss_pred EEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcc
Q 023722 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLAC 99 (278)
Q Consensus 24 ~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a~ 99 (278)
+|||+||++++||++|+++|++||+|++|+|++|+.|++++|||||+|.+.++|++||+.++ ..|+|+.|+|.++.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 79999999999999999999999999999999999999999999999999999999999998 55999999998874
No 22
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1.4e-13 Score=122.71 Aligned_cols=79 Identities=33% Similarity=0.510 Sum_probs=73.4
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~ 94 (278)
++...++++|||||++.-++|++||+.|+.||.|.+|+|.+| +||+||.|+++|+|.+||..+| .+|.|+.++
T Consensus 158 NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~Vk 231 (321)
T KOG0148|consen 158 NQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVR 231 (321)
T ss_pred ccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEE
Confidence 456678999999999999999999999999999999999998 6799999999999999999997 779999999
Q ss_pred EEEccc
Q 023722 95 CNLACL 100 (278)
Q Consensus 95 V~~a~~ 100 (278)
|.+-+.
T Consensus 232 CsWGKe 237 (321)
T KOG0148|consen 232 CSWGKE 237 (321)
T ss_pred Eecccc
Confidence 999853
No 23
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.53 E-value=3.1e-14 Score=141.74 Aligned_cols=84 Identities=30% Similarity=0.475 Sum_probs=77.4
Q ss_pred CCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 023722 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNL 97 (278)
Q Consensus 19 ~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~ 97 (278)
....++|||+||++++++++|+++|++||+|++|+|++| .++++||||||+|.+.++|++||+.++ .+|+|++|+|.+
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~ 360 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVAL 360 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEe
Confidence 456788999999999999999999999999999999999 679999999999999999999999997 669999999999
Q ss_pred cccCCC
Q 023722 98 ACLGVQ 103 (278)
Q Consensus 98 a~~~~~ 103 (278)
+..+..
T Consensus 361 a~~k~~ 366 (562)
T TIGR01628 361 AQRKEQ 366 (562)
T ss_pred ccCcHH
Confidence 975543
No 24
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=2.1e-14 Score=134.73 Aligned_cols=91 Identities=26% Similarity=0.403 Sum_probs=80.6
Q ss_pred CCCCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC--CccCC-
Q 023722 14 AGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA--PVIDG- 90 (278)
Q Consensus 14 ~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~--~~i~G- 90 (278)
..+..|.+.-||||+-||..++|+|||++|++||.|.+|.|++||.|+.+||||||+|.++++|.+|+..++ ++|-|
T Consensus 26 ~~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~ 105 (510)
T KOG0144|consen 26 HTDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGM 105 (510)
T ss_pred CCCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCC
Confidence 345677888999999999999999999999999999999999999999999999999999999999999994 44665
Q ss_pred -eEEEEEEcccCCCC
Q 023722 91 -RRANCNLACLGVQR 104 (278)
Q Consensus 91 -r~i~V~~a~~~~~~ 104 (278)
..|.|+.|+.+.++
T Consensus 106 ~~pvqvk~Ad~E~er 120 (510)
T KOG0144|consen 106 HHPVQVKYADGERER 120 (510)
T ss_pred Ccceeecccchhhhc
Confidence 67888888765554
No 25
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.2e-14 Score=126.14 Aligned_cols=90 Identities=29% Similarity=0.413 Sum_probs=82.6
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~ 94 (278)
++-..+-++||||+|.++++|.-|...|-.||.|+.|.|+.|-.++++|||+||+|...|+|..||..+| .+|.||.|+
T Consensus 4 ~~~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~Grtir 83 (298)
T KOG0111|consen 4 QQMANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIR 83 (298)
T ss_pred ccccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEE
Confidence 3445677999999999999999999999999999999999999999999999999999999999999998 789999999
Q ss_pred EEEcccCCCCC
Q 023722 95 CNLACLGVQRS 105 (278)
Q Consensus 95 V~~a~~~~~~~ 105 (278)
|++|++..-+.
T Consensus 84 VN~AkP~kike 94 (298)
T KOG0111|consen 84 VNLAKPEKIKE 94 (298)
T ss_pred EeecCCccccC
Confidence 99998765443
No 26
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.51 E-value=5.5e-14 Score=139.57 Aligned_cols=76 Identities=30% Similarity=0.425 Sum_probs=68.0
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-Ccc-CCeEEEEE
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVI-DGRRANCN 96 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i-~Gr~i~V~ 96 (278)
...++|||+|||++++|++|+++|++||+|.+|+|++| .++++||||||+|.+.++|++||+.+| .+| .++.|.|.
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 35699999999999999999999999999999999999 789999999999999999999999997 455 36665443
No 27
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.50 E-value=1.5e-13 Score=134.85 Aligned_cols=82 Identities=24% Similarity=0.509 Sum_probs=76.7
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a 98 (278)
...++|||+|||+.+++++|+++|++||.|+.+.|++++.+++++|||||+|.+.++|++||+.++ ..|.|++|+|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 346899999999999999999999999999999999999999999999999999999999999997 5699999999998
Q ss_pred ccC
Q 023722 99 CLG 101 (278)
Q Consensus 99 ~~~ 101 (278)
...
T Consensus 373 ~~~ 375 (509)
T TIGR01642 373 CVG 375 (509)
T ss_pred ccC
Confidence 644
No 28
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=5.4e-14 Score=125.32 Aligned_cols=81 Identities=38% Similarity=0.539 Sum_probs=76.1
Q ss_pred CccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCeEEEEEEcc
Q 023722 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANCNLAC 99 (278)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~Gr~i~V~~a~ 99 (278)
....|||+.|..+++.|+||+.|.+||+|.+++|++|..|+++|||+||.|.++++|++||..||.. |.+|.|+.++|.
T Consensus 61 ~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred cceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 3568999999999999999999999999999999999999999999999999999999999999955 999999999995
Q ss_pred cC
Q 023722 100 LG 101 (278)
Q Consensus 100 ~~ 101 (278)
.+
T Consensus 141 RK 142 (321)
T KOG0148|consen 141 RK 142 (321)
T ss_pred cC
Confidence 43
No 29
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.49 E-value=1.2e-13 Score=133.89 Aligned_cols=82 Identities=24% Similarity=0.399 Sum_probs=75.9
Q ss_pred CCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEc
Q 023722 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (278)
Q Consensus 19 ~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i~V~~a 98 (278)
+...++|||+|||+++++++|+++|++||+|++|+|++|+.++++||||||+|.+.++|++||...+..|.|+.|.|..+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSS 165 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeec
Confidence 44578999999999999999999999999999999999999999999999999999999999986567899999999887
Q ss_pred cc
Q 023722 99 CL 100 (278)
Q Consensus 99 ~~ 100 (278)
..
T Consensus 166 ~~ 167 (457)
T TIGR01622 166 QA 167 (457)
T ss_pred ch
Confidence 54
No 30
>smart00362 RRM_2 RNA recognition motif.
Probab=99.49 E-value=2.2e-13 Score=96.11 Aligned_cols=71 Identities=32% Similarity=0.558 Sum_probs=65.7
Q ss_pred EEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 023722 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (278)
Q Consensus 24 ~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~ 96 (278)
+|||+|||.++++++|+++|++||+|.++.+..++ +.+++++||+|.+.++|++|++.++ ..|++++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999886 7788999999999999999999997 67999998873
No 31
>smart00360 RRM RNA recognition motif.
Probab=99.48 E-value=2.2e-13 Score=95.66 Aligned_cols=70 Identities=36% Similarity=0.589 Sum_probs=65.4
Q ss_pred ECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 023722 27 VGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (278)
Q Consensus 27 VgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~ 96 (278)
|+||++++++++|+++|++||.|.++.+..++.+++++++|||+|.+.++|++|++.++ ..+++++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999999999998889999999999999999999999997 66999998873
No 32
>PLN03213 repressor of silencing 3; Provisional
Probab=99.48 E-value=1.3e-13 Score=131.25 Aligned_cols=79 Identities=18% Similarity=0.294 Sum_probs=71.3
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCH--HHHHHHHHhcC-CccCCeEEE
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREP--EAAMKACVDAA-PVIDGRRAN 94 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~--~~A~~Ai~~~~-~~i~Gr~i~ 94 (278)
......+||||||.+++++++|+.+|..||.|.+|.|++ .|| ||||||+|.+. +++.+||+.+| .+++|+.|+
T Consensus 6 s~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LK 81 (759)
T PLN03213 6 SGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLR 81 (759)
T ss_pred cCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeE
Confidence 345568999999999999999999999999999999994 466 99999999987 78999999997 679999999
Q ss_pred EEEccc
Q 023722 95 CNLACL 100 (278)
Q Consensus 95 V~~a~~ 100 (278)
|+.|++
T Consensus 82 VNKAKP 87 (759)
T PLN03213 82 LEKAKE 87 (759)
T ss_pred EeeccH
Confidence 999975
No 33
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.48 E-value=2.2e-13 Score=131.91 Aligned_cols=80 Identities=31% Similarity=0.559 Sum_probs=75.8
Q ss_pred CccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcc
Q 023722 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLAC 99 (278)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a~ 99 (278)
..++|||+||+.+++|++|+++|++||+|+.|.|++|+.+++++|||||+|.+.++|++||+.++ .+|.|+.|+|.++.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 36899999999999999999999999999999999999999999999999999999999999997 56999999999986
Q ss_pred c
Q 023722 100 L 100 (278)
Q Consensus 100 ~ 100 (278)
.
T Consensus 265 ~ 265 (457)
T TIGR01622 265 D 265 (457)
T ss_pred C
Confidence 3
No 34
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.46 E-value=3.4e-13 Score=117.77 Aligned_cols=78 Identities=29% Similarity=0.596 Sum_probs=75.3
Q ss_pred ccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcc
Q 023722 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLAC 99 (278)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a~ 99 (278)
.++|||+||++++++++|+++|.+||.|..|.|..|+.+++++|||||+|.+.+++.+||+.++ ..|.|++|.|..+.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 6999999999999999999999999999999999999999999999999999999999999998 67999999999975
No 35
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=2.2e-13 Score=128.42 Aligned_cols=80 Identities=28% Similarity=0.453 Sum_probs=73.5
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-Ccc-CCeEEEEEE
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVI-DGRRANCNL 97 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i-~Gr~i~V~~ 97 (278)
..-+.||||.||.++.|++|..+|++.|+|-+++|+.|+.+|.+||||||+|.+.++|++||+.+| ++| .||.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 567899999999999999999999999999999999999999999999999999999999999996 665 588887765
Q ss_pred cc
Q 023722 98 AC 99 (278)
Q Consensus 98 a~ 99 (278)
+.
T Consensus 161 Sv 162 (506)
T KOG0117|consen 161 SV 162 (506)
T ss_pred ee
Confidence 53
No 36
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.45 E-value=4.3e-13 Score=118.92 Aligned_cols=76 Identities=17% Similarity=0.158 Sum_probs=69.0
Q ss_pred CccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEcc
Q 023722 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLAC 99 (278)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i~V~~a~ 99 (278)
+..+|||+||++++||++|+++|+.||+|++|+|++|+ +.++||||+|+++++++.||...+.+|.++.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 45789999999999999999999999999999999984 45679999999999999999766788999999998875
No 37
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=7.5e-14 Score=131.02 Aligned_cols=85 Identities=25% Similarity=0.411 Sum_probs=75.7
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC--ccCC--eEEEE
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP--VIDG--RRANC 95 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~--~i~G--r~i~V 95 (278)
.+++||||+.|+..++|++|+++|++||.|++|.|++|.+ +.+|||+||+|.++|-|..||+.+|+ .+.| ..|.|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 4579999999999999999999999999999999999965 89999999999999999999999973 3554 68999
Q ss_pred EEcccCCCCC
Q 023722 96 NLACLGVQRS 105 (278)
Q Consensus 96 ~~a~~~~~~~ 105 (278)
++|+.++.+.
T Consensus 201 kFADtqkdk~ 210 (510)
T KOG0144|consen 201 KFADTQKDKD 210 (510)
T ss_pred EecccCCCch
Confidence 9998765543
No 38
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.45 E-value=7.8e-14 Score=128.88 Aligned_cols=86 Identities=41% Similarity=0.748 Sum_probs=80.9
Q ss_pred CccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEccc
Q 023722 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (278)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i~V~~a~~ 100 (278)
+.++|||++|+|+++||.|++.|++||+|.+|+|++|+.+++++||+||+|++.+.+.++|....+.|+++.|+++.|.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 78999999999999999999999999999999999999999999999999999999999999989999999999999987
Q ss_pred CCCCCC
Q 023722 101 GVQRSK 106 (278)
Q Consensus 101 ~~~~~~ 106 (278)
+....+
T Consensus 85 r~~~~~ 90 (311)
T KOG4205|consen 85 REDQTK 90 (311)
T ss_pred cccccc
Confidence 765443
No 39
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.41 E-value=4.4e-13 Score=113.43 Aligned_cols=82 Identities=27% Similarity=0.372 Sum_probs=77.4
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeEEEEE
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCN 96 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~-~i~Gr~i~V~ 96 (278)
+.....+|||+||++.++|+.|.++|-+.|.|..+.|++|+.+...+|||||+|.++|+|+-||+.+|. .|-||+|+|+
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 445678999999999999999999999999999999999999999999999999999999999999994 4999999999
Q ss_pred Ecc
Q 023722 97 LAC 99 (278)
Q Consensus 97 ~a~ 99 (278)
.+.
T Consensus 85 kas 87 (203)
T KOG0131|consen 85 KAS 87 (203)
T ss_pred ecc
Confidence 996
No 40
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=8.7e-13 Score=117.20 Aligned_cols=84 Identities=27% Similarity=0.421 Sum_probs=78.3
Q ss_pred CCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeEEEEEE
Q 023722 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNL 97 (278)
Q Consensus 19 ~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~-~i~Gr~i~V~~ 97 (278)
++..+.|.|--||..+|+|+||.+|...|||++|++++||.+|.+.||+||.|.+++||++||..+|. .|..+.|+|++
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 55668899999999999999999999999999999999999999999999999999999999999985 49999999999
Q ss_pred cccCC
Q 023722 98 ACLGV 102 (278)
Q Consensus 98 a~~~~ 102 (278)
|++..
T Consensus 118 ARPSs 122 (360)
T KOG0145|consen 118 ARPSS 122 (360)
T ss_pred ccCCh
Confidence 97543
No 41
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.40 E-value=2.7e-12 Score=90.94 Aligned_cols=73 Identities=32% Similarity=0.571 Sum_probs=66.8
Q ss_pred EEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCeEEEEEE
Q 023722 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANCNL 97 (278)
Q Consensus 24 ~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~Gr~i~V~~ 97 (278)
+|+|+|||+++++++|+++|+++|.|.++.+..++.+ +.++++||+|.+.++|..|++.++.. +++++|.|++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999988765 77899999999999999999999754 9999998863
No 42
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.39 E-value=8.5e-13 Score=126.91 Aligned_cols=82 Identities=29% Similarity=0.548 Sum_probs=78.1
Q ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcccC
Q 023722 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLACLG 101 (278)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a~~~ 101 (278)
+.|||||||.+++||+|.++|++.|.|..+++..|++||++|||+|++|.+.+++++|++.+| .++.||+|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 899999999999999999999999999999999999999999999999999999999999998 6799999999999765
Q ss_pred CCC
Q 023722 102 VQR 104 (278)
Q Consensus 102 ~~~ 104 (278)
..+
T Consensus 99 ~~~ 101 (435)
T KOG0108|consen 99 KNA 101 (435)
T ss_pred chh
Confidence 543
No 43
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.39 E-value=5.3e-12 Score=116.79 Aligned_cols=86 Identities=33% Similarity=0.592 Sum_probs=80.4
Q ss_pred CccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEccc
Q 023722 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (278)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i~V~~a~~ 100 (278)
+.++|||++|+.+++|++|++.|++||.|..+.|+.|+.+.+++||+||+|.+++++++++...-++|++++++|+.|.+
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccc
Confidence 46799999999999999999999999999999999999999999999999999999999999888999999999999987
Q ss_pred CCCCCC
Q 023722 101 GVQRSK 106 (278)
Q Consensus 101 ~~~~~~ 106 (278)
+.....
T Consensus 176 k~~~~~ 181 (311)
T KOG4205|consen 176 KEVMQS 181 (311)
T ss_pred hhhccc
Confidence 765543
No 44
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.38 E-value=4e-12 Score=121.68 Aligned_cols=85 Identities=26% Similarity=0.394 Sum_probs=72.9
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEcc
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLAC 99 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i~V~~a~ 99 (278)
....+|||+|||.++++++|+++|.+||.|++..|......++...|+||+|.+.++++.+|+...-.|++++|.|+.++
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKR 365 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecc
Confidence 44556999999999999999999999999999988775534555599999999999999999998667999999999986
Q ss_pred cCCCC
Q 023722 100 LGVQR 104 (278)
Q Consensus 100 ~~~~~ 104 (278)
.....
T Consensus 366 ~~~~g 370 (419)
T KOG0116|consen 366 PGFRG 370 (419)
T ss_pred ccccc
Confidence 65443
No 45
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.37 E-value=3.5e-12 Score=120.08 Aligned_cols=86 Identities=19% Similarity=0.344 Sum_probs=76.1
Q ss_pred CCccEEEECCCCCCCCHHHHHHHH-HhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYF-EQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNL 97 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F-~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~ 97 (278)
...+.+||.|||.++.|.+||+|| ++-|+|+.|+++.|. ++++|||+.|+|+++|.++||+|.+| ++++||.|+|+.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 456679999999999999999999 678999999999995 69999999999999999999999998 679999999998
Q ss_pred cccCCCCCC
Q 023722 98 ACLGVQRSK 106 (278)
Q Consensus 98 a~~~~~~~~ 106 (278)
........+
T Consensus 121 d~d~q~~~~ 129 (608)
T KOG4212|consen 121 DHDEQRDQY 129 (608)
T ss_pred cCchhhhhh
Confidence 865443333
No 46
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.36 E-value=9.6e-13 Score=118.43 Aligned_cols=71 Identities=28% Similarity=0.532 Sum_probs=67.1
Q ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeEEEEEEcccC
Q 023722 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLACLG 101 (278)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~-~i~Gr~i~V~~a~~~ 101 (278)
.||||+|||.++++.+|+.+|++||+|++|+|+++ |+||+.+|...++.||+.|++ +|+|..|+|+.++++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 58999999999999999999999999999999977 999999999999999999986 499999999998766
No 47
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.36 E-value=4.9e-12 Score=124.11 Aligned_cols=78 Identities=14% Similarity=0.174 Sum_probs=70.8
Q ss_pred CCCccEEEECCCCC-CCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 023722 19 DTTYTKVFVGGLAW-ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (278)
Q Consensus 19 ~~~~~~lfVgnLp~-~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~ 96 (278)
....++|||+||++ ++++++|+++|++||+|.+|+|++++ +|||||+|.+.++|++||+.|+ ..|+|++|+|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 45678999999998 69999999999999999999999874 6899999999999999999997 66999999999
Q ss_pred EcccC
Q 023722 97 LACLG 101 (278)
Q Consensus 97 ~a~~~ 101 (278)
+++..
T Consensus 347 ~s~~~ 351 (481)
T TIGR01649 347 PSKQQ 351 (481)
T ss_pred Ecccc
Confidence 98543
No 48
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.35 E-value=3.1e-12 Score=103.72 Aligned_cols=86 Identities=22% Similarity=0.315 Sum_probs=79.8
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~ 94 (278)
++-...---|||.++.++++|++|.+.|..||+|+.+.+..|+.||-.|||++|+|++.+.|++||+.+| .+|.++.|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 5555666789999999999999999999999999999999999999999999999999999999999998 679999999
Q ss_pred EEEcccC
Q 023722 95 CNLACLG 101 (278)
Q Consensus 95 V~~a~~~ 101 (278)
|.++-.+
T Consensus 146 VDw~Fv~ 152 (170)
T KOG0130|consen 146 VDWCFVK 152 (170)
T ss_pred EEEEEec
Confidence 9999643
No 49
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.35 E-value=1.4e-13 Score=116.51 Aligned_cols=80 Identities=28% Similarity=0.554 Sum_probs=74.6
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCeEEEEEEc
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANCNLA 98 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~Gr~i~V~~a 98 (278)
.++--|||||||.+.||.||.-+|++||+|..|.+++|+.||+||||||+.|+|..+.--|+..+|.+ |.||.|+|..-
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 45678999999999999999999999999999999999999999999999999999999999999854 99999999876
Q ss_pred c
Q 023722 99 C 99 (278)
Q Consensus 99 ~ 99 (278)
.
T Consensus 113 ~ 113 (219)
T KOG0126|consen 113 S 113 (219)
T ss_pred c
Confidence 4
No 50
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.34 E-value=5.9e-12 Score=123.54 Aligned_cols=74 Identities=20% Similarity=0.217 Sum_probs=67.2
Q ss_pred ccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhc--C-CccCCeEEEEEEc
Q 023722 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA--A-PVIDGRRANCNLA 98 (278)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~--~-~~i~Gr~i~V~~a 98 (278)
++.|||+|||++++|++|+++|++||+|++|+|+++ |+||||+|++.++|++||+.+ + ..|+|+.|.|.++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 589999999999999999999999999999999865 579999999999999999975 4 5699999999998
Q ss_pred ccC
Q 023722 99 CLG 101 (278)
Q Consensus 99 ~~~ 101 (278)
..+
T Consensus 76 ~~~ 78 (481)
T TIGR01649 76 TSQ 78 (481)
T ss_pred CCc
Confidence 643
No 51
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=5.9e-12 Score=121.26 Aligned_cols=85 Identities=35% Similarity=0.525 Sum_probs=77.2
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhc----C-C--ccCC
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA----A-P--VIDG 90 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~----~-~--~i~G 90 (278)
++...++|||.||+++++|++|.++|++||+|..+.|+.++.|+.++|.|||.|.+.+++.+||+.- . . .|+|
T Consensus 288 n~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~G 367 (678)
T KOG0127|consen 288 NITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDG 367 (678)
T ss_pred cccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEec
Confidence 3455689999999999999999999999999999999999999999999999999999999999987 2 2 3899
Q ss_pred eEEEEEEcccCC
Q 023722 91 RRANCNLACLGV 102 (278)
Q Consensus 91 r~i~V~~a~~~~ 102 (278)
|.|+|.++..+.
T Consensus 368 R~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 368 RLLKVTLAVTRK 379 (678)
T ss_pred cEEeeeeccchH
Confidence 999999997653
No 52
>smart00361 RRM_1 RNA recognition motif.
Probab=99.28 E-value=1.8e-11 Score=89.22 Aligned_cols=60 Identities=30% Similarity=0.510 Sum_probs=54.1
Q ss_pred HHHHHHHHH----hcCCEEEEE-EeecCCC--CCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEE
Q 023722 36 KETMEKYFE----QFGEILEAV-VITDKAT--GRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (278)
Q Consensus 36 ee~L~~~F~----~fG~I~~v~-i~~dk~t--g~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V 95 (278)
+++|+++|+ +||.|.+|. |..++.+ +++|||+||+|.+.++|++||+.++ ..++||.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678888888 999999995 7777777 8999999999999999999999997 6799999987
No 53
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=2.3e-11 Score=117.32 Aligned_cols=81 Identities=27% Similarity=0.432 Sum_probs=73.6
Q ss_pred ccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEccc
Q 023722 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLACL 100 (278)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a~~ 100 (278)
--+|.|.||||.+.+++|+.+|+.||.|.+|.|++.++ ++.+|||||.|.+..+|.+||+.+| ++|+||.|.|.||..
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 45899999999999999999999999999999997765 5566999999999999999999998 789999999999976
Q ss_pred CCC
Q 023722 101 GVQ 103 (278)
Q Consensus 101 ~~~ 103 (278)
+..
T Consensus 196 Kd~ 198 (678)
T KOG0127|consen 196 KDT 198 (678)
T ss_pred ccc
Confidence 543
No 54
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.18 E-value=1.1e-10 Score=80.95 Aligned_cols=55 Identities=31% Similarity=0.532 Sum_probs=48.9
Q ss_pred HHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 023722 39 MEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (278)
Q Consensus 39 L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a 98 (278)
|+++|++||+|+++.+..++ ++++||+|.+.++|++|++.++ ..++|++|+|+++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999997764 5899999999999999999997 5699999999875
No 55
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=3.5e-11 Score=110.96 Aligned_cols=82 Identities=30% Similarity=0.467 Sum_probs=76.5
Q ss_pred CCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 023722 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNL 97 (278)
Q Consensus 19 ~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~ 97 (278)
..+.+.|||..|.+-+++|+|.-+|++||.|..|.|++|+.||.+..|+||+|++.+++++|.-.|. ..|+.++|+|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 3567889999999999999999999999999999999999999999999999999999999999995 559999999998
Q ss_pred ccc
Q 023722 98 ACL 100 (278)
Q Consensus 98 a~~ 100 (278)
+.+
T Consensus 316 SQS 318 (479)
T KOG0415|consen 316 SQS 318 (479)
T ss_pred hhh
Confidence 764
No 56
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=3e-11 Score=107.89 Aligned_cols=86 Identities=29% Similarity=0.375 Sum_probs=80.5
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCeEEE
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRAN 94 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~Gr~i~ 94 (278)
+.+..+.|+|||=.||.+..+.+|.+.|-.||.|.+.+|..|+.|..+|.|+||.|+++.+++.||..+|.. |.-|+|+
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 456788999999999999999999999999999999999999999999999999999999999999999965 9999999
Q ss_pred EEEcccC
Q 023722 95 CNLACLG 101 (278)
Q Consensus 95 V~~a~~~ 101 (278)
|.+++++
T Consensus 359 VQLKRPk 365 (371)
T KOG0146|consen 359 VQLKRPK 365 (371)
T ss_pred hhhcCcc
Confidence 9998654
No 57
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=1.6e-10 Score=89.85 Aligned_cols=80 Identities=20% Similarity=0.295 Sum_probs=70.4
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeEEEEE
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCN 96 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~-~i~Gr~i~V~ 96 (278)
...-.+-|||.|||.++|.|++-++|.+||.|..|+|-.++. .+|-|||.++|..+|++||+.+.. -++++-|.|-
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 344567899999999999999999999999999999976654 589999999999999999999974 4999999998
Q ss_pred Eccc
Q 023722 97 LACL 100 (278)
Q Consensus 97 ~a~~ 100 (278)
+-..
T Consensus 91 yyq~ 94 (124)
T KOG0114|consen 91 YYQP 94 (124)
T ss_pred ecCH
Confidence 7654
No 58
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=5e-11 Score=106.41 Aligned_cols=84 Identities=27% Similarity=0.415 Sum_probs=74.4
Q ss_pred CccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC--CccCC--eEEEEE
Q 023722 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA--PVIDG--RRANCN 96 (278)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~--~~i~G--r~i~V~ 96 (278)
+++|||||.|...-.|||++++|..||+|++|.+++..+ +.+|||+||+|.+..+|+.||..++ ..+-| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 779999999999999999999999999999999998864 8999999999999999999999996 33554 578999
Q ss_pred EcccCCCCC
Q 023722 97 LACLGVQRS 105 (278)
Q Consensus 97 ~a~~~~~~~ 105 (278)
++...++|.
T Consensus 97 ~ADTdkER~ 105 (371)
T KOG0146|consen 97 FADTDKERT 105 (371)
T ss_pred eccchHHHH
Confidence 997665554
No 59
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.15 E-value=4.8e-11 Score=107.54 Aligned_cols=81 Identities=23% Similarity=0.459 Sum_probs=73.3
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~ 96 (278)
..+..+||+|+||.+.++.++|+..|++||.|.+++|.+| |+||+|+-.++|..||+.++ .+|+|++++|.
T Consensus 74 Ksk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq 145 (346)
T KOG0109|consen 74 KSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQ 145 (346)
T ss_pred cCCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeee
Confidence 4567899999999999999999999999999999999877 99999999999999999996 77999999999
Q ss_pred EcccCCCCCC
Q 023722 97 LACLGVQRSK 106 (278)
Q Consensus 97 ~a~~~~~~~~ 106 (278)
++.++.....
T Consensus 146 ~stsrlrtap 155 (346)
T KOG0109|consen 146 LSTSRLRTAP 155 (346)
T ss_pred eeccccccCC
Confidence 9977654443
No 60
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=1.3e-10 Score=106.99 Aligned_cols=81 Identities=32% Similarity=0.441 Sum_probs=73.4
Q ss_pred CCCCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhc-C-CccCCe
Q 023722 14 AGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA-A-PVIDGR 91 (278)
Q Consensus 14 ~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~-~-~~i~Gr 91 (278)
-.+-+|...++|||++|..+++|.+|+++|.+||+|+.+++... +++|||+|.++++|++|.++. + -+|+|+
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~ 293 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGF 293 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecce
Confidence 45778999999999999999999999999999999999999876 459999999999999999988 5 349999
Q ss_pred EEEEEEccc
Q 023722 92 RANCNLACL 100 (278)
Q Consensus 92 ~i~V~~a~~ 100 (278)
+|+|.|.++
T Consensus 294 Rl~i~Wg~~ 302 (377)
T KOG0153|consen 294 RLKIKWGRP 302 (377)
T ss_pred EEEEEeCCC
Confidence 999999855
No 61
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=3.6e-11 Score=111.24 Aligned_cols=80 Identities=30% Similarity=0.558 Sum_probs=74.9
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a 98 (278)
.-.|+||||.+.+++.|+.||..|..||.|++|.+..|+.|+++|||+||+|+-+|.|+-|++.+| ..+.||.|+|..-
T Consensus 111 aiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 111 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred HHhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 346899999999999999999999999999999999999999999999999999999999999998 5599999999754
Q ss_pred c
Q 023722 99 C 99 (278)
Q Consensus 99 ~ 99 (278)
.
T Consensus 191 s 191 (544)
T KOG0124|consen 191 S 191 (544)
T ss_pred C
Confidence 3
No 62
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.13 E-value=7.5e-11 Score=113.84 Aligned_cols=82 Identities=30% Similarity=0.520 Sum_probs=75.0
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a 98 (278)
.+..+|||+||..+++|++|+..|+.||.|+.|.+.+|..||++|||+||+|.+.++|++|++.+| -+|-|+.|+|..-
T Consensus 276 ~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 276 GPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred cchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEe
Confidence 444559999999999999999999999999999999999999999999999999999999999998 4699999998876
Q ss_pred ccC
Q 023722 99 CLG 101 (278)
Q Consensus 99 ~~~ 101 (278)
..+
T Consensus 356 ~~r 358 (549)
T KOG0147|consen 356 TER 358 (549)
T ss_pred eee
Confidence 543
No 63
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.12 E-value=1e-10 Score=99.22 Aligned_cols=80 Identities=25% Similarity=0.412 Sum_probs=73.5
Q ss_pred CccEEEECCCCCCCCHHHHHHHHHhcCCEEEE-EEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 023722 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEA-VVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (278)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v-~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a 98 (278)
-..+|||+||.++++|..|.+.|+.||.|.+. +|++|.+|+.+++|+||.|++.+.+.+||+.+| ..+.+++|.|..+
T Consensus 95 vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 95 VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred ccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEE
Confidence 34789999999999999999999999987764 899999999999999999999999999999997 5699999999998
Q ss_pred cc
Q 023722 99 CL 100 (278)
Q Consensus 99 ~~ 100 (278)
..
T Consensus 175 ~k 176 (203)
T KOG0131|consen 175 FK 176 (203)
T ss_pred Ee
Confidence 54
No 64
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=2.5e-10 Score=108.49 Aligned_cols=83 Identities=33% Similarity=0.507 Sum_probs=73.6
Q ss_pred ccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCeEEEEEEccc
Q 023722 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANCNLACL 100 (278)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~Gr~i~V~~a~~ 100 (278)
...|||.||+++++.++|.++|+.||+|++|+|.+|++ | +||| ||+|+++++|++||+.+|.+ +.+++|.|.+...
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 33499999999999999999999999999999999975 4 9999 99999999999999999855 8999999999876
Q ss_pred CCCCCCC
Q 023722 101 GVQRSKP 107 (278)
Q Consensus 101 ~~~~~~~ 107 (278)
+.++.++
T Consensus 153 ~~er~~~ 159 (369)
T KOG0123|consen 153 KEEREAP 159 (369)
T ss_pred hhhhccc
Confidence 6655443
No 65
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.03 E-value=6.9e-10 Score=108.91 Aligned_cols=76 Identities=18% Similarity=0.312 Sum_probs=61.4
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhc------------CCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHh
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQF------------GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~f------------G~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~ 83 (278)
+..+...++|||+|||+++|+++|+++|+++ +.|..+.+ .+.+|||||+|.+.++|++||+
T Consensus 169 ~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~- 241 (509)
T TIGR01642 169 QQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA- 241 (509)
T ss_pred ccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-
Confidence 4556678999999999999999999999975 23333433 3457899999999999999995
Q ss_pred cC-CccCCeEEEEEEc
Q 023722 84 AA-PVIDGRRANCNLA 98 (278)
Q Consensus 84 ~~-~~i~Gr~i~V~~a 98 (278)
++ .+|.|+.|+|...
T Consensus 242 l~g~~~~g~~l~v~r~ 257 (509)
T TIGR01642 242 LDSIIYSNVFLKIRRP 257 (509)
T ss_pred CCCeEeeCceeEecCc
Confidence 65 5699999998654
No 66
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.01 E-value=1.5e-09 Score=96.69 Aligned_cols=85 Identities=24% Similarity=0.304 Sum_probs=77.4
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCeEEE
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRAN 94 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~Gr~i~ 94 (278)
+..+...--|||=||.++++|.-|-++|..||.|..|+|++|..|.+.|||+||++.+-++|..||..+|.. +.+|.|.
T Consensus 272 p~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQ 351 (360)
T KOG0145|consen 272 PGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 351 (360)
T ss_pred CCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEE
Confidence 444555667999999999999999999999999999999999999999999999999999999999999854 9999999
Q ss_pred EEEccc
Q 023722 95 CNLACL 100 (278)
Q Consensus 95 V~~a~~ 100 (278)
|.++..
T Consensus 352 VsFKtn 357 (360)
T KOG0145|consen 352 VSFKTN 357 (360)
T ss_pred EEEecC
Confidence 999754
No 67
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.98 E-value=1.7e-09 Score=104.94 Aligned_cols=83 Identities=24% Similarity=0.382 Sum_probs=76.1
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a 98 (278)
.-.++|||.+|...+.-.+|+.+|++||+|.-++|+++..+.-.++|+||++.+.++|.+||+.|+ .+|.||.|.|+.+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 456889999999999999999999999999999999998887889999999999999999999997 6799999999998
Q ss_pred ccCC
Q 023722 99 CLGV 102 (278)
Q Consensus 99 ~~~~ 102 (278)
+...
T Consensus 483 KNEp 486 (940)
T KOG4661|consen 483 KNEP 486 (940)
T ss_pred ccCc
Confidence 7543
No 68
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.95 E-value=3e-09 Score=91.93 Aligned_cols=86 Identities=24% Similarity=0.337 Sum_probs=76.6
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhc-CCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCeEE
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQF-GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRA 93 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~f-G~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~Gr~i 93 (278)
..++....-++|..|+.-+.|.+|..+|.+| |.|+++++-+++.||.|||||||+|++++.|+-|-+.||.. |.++.|
T Consensus 43 ~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL 122 (214)
T KOG4208|consen 43 KPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLL 122 (214)
T ss_pred CCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhee
Confidence 3455667788999999999999999999998 78888899899999999999999999999999999999865 889999
Q ss_pred EEEEcccC
Q 023722 94 NCNLACLG 101 (278)
Q Consensus 94 ~V~~a~~~ 101 (278)
.|..-.+.
T Consensus 123 ~c~vmppe 130 (214)
T KOG4208|consen 123 ECHVMPPE 130 (214)
T ss_pred eeEEeCch
Confidence 99987654
No 69
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.94 E-value=2.1e-09 Score=107.41 Aligned_cols=77 Identities=21% Similarity=0.377 Sum_probs=70.0
Q ss_pred CCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 023722 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNL 97 (278)
Q Consensus 19 ~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~ 97 (278)
..-+++||||.|+.+++|.||+.+|+.||+|++|.++.. ++||||++..+.+|++|+.+|+ ..|..+.|+|.|
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAW 491 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEee
Confidence 345789999999999999999999999999999998765 6799999999999999999995 669999999999
Q ss_pred cccC
Q 023722 98 ACLG 101 (278)
Q Consensus 98 a~~~ 101 (278)
+..+
T Consensus 492 a~g~ 495 (894)
T KOG0132|consen 492 AVGK 495 (894)
T ss_pred eccC
Confidence 9654
No 70
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=2.6e-09 Score=99.07 Aligned_cols=83 Identities=17% Similarity=0.374 Sum_probs=76.6
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~ 96 (278)
+....++|||..+.++.+|+|||.+|+.||+|++|.+-+++.++.+|||+|++|.+..+..+||..+| -.|.|+-|+|-
T Consensus 206 eAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVG 285 (544)
T KOG0124|consen 206 EAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVG 285 (544)
T ss_pred HHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecc
Confidence 34567899999999999999999999999999999999999889999999999999999999999999 45999999998
Q ss_pred Eccc
Q 023722 97 LACL 100 (278)
Q Consensus 97 ~a~~ 100 (278)
++..
T Consensus 286 k~vT 289 (544)
T KOG0124|consen 286 KCVT 289 (544)
T ss_pred cccC
Confidence 8753
No 71
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.89 E-value=1.4e-09 Score=96.59 Aligned_cols=83 Identities=31% Similarity=0.521 Sum_probs=76.0
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V 95 (278)
..++++.+||+|.|..+++++.|.+.|.+|-.-...++++|+.|+++|||+||.|.|..++.+|+++++ +.++.|.|++
T Consensus 185 ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpikl 264 (290)
T KOG0226|consen 185 EWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKL 264 (290)
T ss_pred cCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHh
Confidence 355678999999999999999999999999999999999999999999999999999999999999998 5699999887
Q ss_pred EEcc
Q 023722 96 NLAC 99 (278)
Q Consensus 96 ~~a~ 99 (278)
+...
T Consensus 265 RkS~ 268 (290)
T KOG0226|consen 265 RKSE 268 (290)
T ss_pred hhhh
Confidence 6654
No 72
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.88 E-value=3.7e-09 Score=99.93 Aligned_cols=75 Identities=25% Similarity=0.496 Sum_probs=67.6
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~ 96 (278)
-..+.|+|||.|||.++||..||+.|..||.|+.++|+.. +++|| .|.|.++++|++||..++ ..|+||.|+|.
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~---GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~ 606 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMEN---GKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVT 606 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhhcc---CCccc--eEEecCHHHHHHHHHHhccCcccCceeeee
Confidence 3457789999999999999999999999999999999543 77887 899999999999999998 56999999997
Q ss_pred E
Q 023722 97 L 97 (278)
Q Consensus 97 ~ 97 (278)
+
T Consensus 607 y 607 (608)
T KOG4212|consen 607 Y 607 (608)
T ss_pred e
Confidence 6
No 73
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.87 E-value=9.6e-09 Score=91.99 Aligned_cols=86 Identities=29% Similarity=0.416 Sum_probs=77.0
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCeEEEEE
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANCN 96 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~Gr~i~V~ 96 (278)
.++..++|+|.||+..++++||+++|++|++++.+.|..|+ +|++.|.|-|.|...++|++|++.++.+ ++|+.+++.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 56667899999999999999999999999999999999886 5999999999999999999999999755 999999998
Q ss_pred EcccCCCC
Q 023722 97 LACLGVQR 104 (278)
Q Consensus 97 ~a~~~~~~ 104 (278)
+.......
T Consensus 158 ~i~~~~~~ 165 (243)
T KOG0533|consen 158 IISSPSQS 165 (243)
T ss_pred EecCcccc
Confidence 87654433
No 74
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.87 E-value=1e-08 Score=89.75 Aligned_cols=81 Identities=25% Similarity=0.387 Sum_probs=71.5
Q ss_pred CCCccEEEECCCCCCCCHHHHHH----HHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCeEE
Q 023722 19 DTTYTKVFVGGLAWETQKETMEK----YFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRA 93 (278)
Q Consensus 19 ~~~~~~lfVgnLp~~~tee~L~~----~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~Gr~i 93 (278)
-.+..+|||.||++.+..++|++ +|++||+|.+|...+ |.+.||-|||.|++.+.|-.|++.++.. +-|+.+
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~m 82 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPM 82 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchh
Confidence 34555999999999999999998 999999999998864 4678999999999999999999999755 899999
Q ss_pred EEEEcccCC
Q 023722 94 NCNLACLGV 102 (278)
Q Consensus 94 ~V~~a~~~~ 102 (278)
+|.+|+.+.
T Consensus 83 riqyA~s~s 91 (221)
T KOG4206|consen 83 RIQYAKSDS 91 (221)
T ss_pred heecccCcc
Confidence 999997553
No 75
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.86 E-value=6e-09 Score=103.37 Aligned_cols=80 Identities=33% Similarity=0.529 Sum_probs=70.9
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCC---CccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEE
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATG---RSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg---~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V 95 (278)
.+.++|||.||+++++.++|+.+|.+.|.|+.+.|.+.++.. .|.||+||+|.+.++|++|++.++ ++|+|+.|.|
T Consensus 513 ~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~l 592 (725)
T KOG0110|consen 513 ETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLEL 592 (725)
T ss_pred ccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEE
Confidence 344559999999999999999999999999999998766432 245999999999999999999998 7799999999
Q ss_pred EEcc
Q 023722 96 NLAC 99 (278)
Q Consensus 96 ~~a~ 99 (278)
+++.
T Consensus 593 k~S~ 596 (725)
T KOG0110|consen 593 KISE 596 (725)
T ss_pred Eecc
Confidence 9986
No 76
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.85 E-value=2e-08 Score=87.94 Aligned_cols=90 Identities=22% Similarity=0.280 Sum_probs=71.6
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEe-ecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cC---Ce
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVI-TDKATGRSKGYGFVTFREPEAAMKACVDAAPV-ID---GR 91 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~-~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~---Gr 91 (278)
.+....++|||.+||.++...+|..+|..|---+.+.|. ++|.....+-++||+|.+..+|++|++.+|.+ || +.
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~s 108 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGS 108 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCc
Confidence 445668999999999999999999999998666655443 34443445689999999999999999999855 55 78
Q ss_pred EEEEEEcccCCCCCC
Q 023722 92 RANCNLACLGVQRSK 106 (278)
Q Consensus 92 ~i~V~~a~~~~~~~~ 106 (278)
.|++++|+...++++
T Consensus 109 tLhiElAKSNtK~kr 123 (284)
T KOG1457|consen 109 TLHIELAKSNTKRKR 123 (284)
T ss_pred eeEeeehhcCccccc
Confidence 899999977655444
No 77
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.82 E-value=3.1e-09 Score=105.36 Aligned_cols=83 Identities=27% Similarity=0.426 Sum_probs=75.5
Q ss_pred CCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeEEEEEE
Q 023722 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNL 97 (278)
Q Consensus 19 ~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~-~i~Gr~i~V~~ 97 (278)
+.+.++|+|.|||...+..+|+++|..||.|..|+|+.....+.++|||||+|-++++|.+|++.+.. -|-||+|.+++
T Consensus 610 kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEw 689 (725)
T KOG0110|consen 610 KKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEW 689 (725)
T ss_pred ccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheeh
Confidence 34468999999999999999999999999999999998867788899999999999999999999974 49999999999
Q ss_pred cccC
Q 023722 98 ACLG 101 (278)
Q Consensus 98 a~~~ 101 (278)
|+..
T Consensus 690 A~~d 693 (725)
T KOG0110|consen 690 AKSD 693 (725)
T ss_pred hccc
Confidence 9754
No 78
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.82 E-value=9.9e-09 Score=91.68 Aligned_cols=85 Identities=25% Similarity=0.336 Sum_probs=78.8
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~ 94 (278)
.+.+.+.+.+||+|++..++.++++.+|+.||.|..|.|+.|+.++.+|||+||+|.+.+.++++++ ++ ..|.++.|+
T Consensus 95 ~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~ 173 (231)
T KOG4209|consen 95 RQKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIE 173 (231)
T ss_pred hhhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccce
Confidence 4678899999999999999999999999999999999999999999999999999999999999999 65 679999999
Q ss_pred EEEcccC
Q 023722 95 CNLACLG 101 (278)
Q Consensus 95 V~~a~~~ 101 (278)
|...+.+
T Consensus 174 vt~~r~~ 180 (231)
T KOG4209|consen 174 VTLKRTN 180 (231)
T ss_pred eeeeeee
Confidence 9988543
No 79
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.79 E-value=3.4e-07 Score=84.76 Aligned_cols=76 Identities=20% Similarity=0.366 Sum_probs=65.3
Q ss_pred CccEEEECCCCCCCCHHHHHHHHHhcC--CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 023722 21 TYTKVFVGGLAWETQKETMEKYFEQFG--EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (278)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG--~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~ 96 (278)
...-+|||||.|.+|++||.+.+..-| .|.++++..++.+|.+|||++|...+..++++.++.+. ++|.|+.-.|-
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 344589999999999999999988777 67888899999999999999999999999999999885 67988765443
No 80
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=3.2e-08 Score=94.15 Aligned_cols=72 Identities=25% Similarity=0.382 Sum_probs=66.9
Q ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeEEEEEEccc
Q 023722 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLACL 100 (278)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~-~i~Gr~i~V~~a~~ 100 (278)
..|||| +++||+.|.++|+..|.|++|+|.+|. | +.|||+|.|.++++|++||+.+|. .|.|++|++-++..
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~r 74 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQR 74 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhcc
Confidence 468999 899999999999999999999999998 6 999999999999999999999994 59999999988753
No 81
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.69 E-value=6.1e-08 Score=92.99 Aligned_cols=80 Identities=23% Similarity=0.319 Sum_probs=69.6
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeEEEEEE
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNL 97 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i~V~~ 97 (278)
+-.+..-|-+.+|||++|++||+++|+.++ |+.+++.+ .+|+..|-|||+|.+.+++++||++....+..|-|+|..
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFT 82 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEc
Confidence 445667788899999999999999999996 78866654 479999999999999999999999988789999999988
Q ss_pred ccc
Q 023722 98 ACL 100 (278)
Q Consensus 98 a~~ 100 (278)
+..
T Consensus 83 ~~~ 85 (510)
T KOG4211|consen 83 AGG 85 (510)
T ss_pred cCC
Confidence 843
No 82
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.64 E-value=1.5e-07 Score=87.01 Aligned_cols=84 Identities=18% Similarity=0.266 Sum_probs=75.2
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEE--------EEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-Cc
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEIL--------EAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PV 87 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~--------~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~ 87 (278)
.+...+++|||.|||.++|.+++.++|++||-|. .|+|-++.. |+.||=+++.|-..++++-||+.|+ ..
T Consensus 129 ~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~ 207 (382)
T KOG1548|consen 129 PEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDE 207 (382)
T ss_pred cccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccc
Confidence 4567788899999999999999999999999876 378888865 9999999999999999999999997 66
Q ss_pred cCCeEEEEEEcccC
Q 023722 88 IDGRRANCNLACLG 101 (278)
Q Consensus 88 i~Gr~i~V~~a~~~ 101 (278)
|.|++|+|+.|+-.
T Consensus 208 ~rg~~~rVerAkfq 221 (382)
T KOG1548|consen 208 LRGKKLRVERAKFQ 221 (382)
T ss_pred ccCcEEEEehhhhh
Confidence 99999999999754
No 83
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.57 E-value=2.3e-08 Score=87.32 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=69.4
Q ss_pred CccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCeEEEEEEcc
Q 023722 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANCNLAC 99 (278)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~Gr~i~V~~a~ 99 (278)
..++|||+||..+++||.|.++|-+-|.|.+|.|..+++ ++.| |+||+|+++.++.-|++.+|.+ +.++.|.|.+..
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 458899999999999999999999999999999998876 5566 9999999999999999999854 888888887765
Q ss_pred c
Q 023722 100 L 100 (278)
Q Consensus 100 ~ 100 (278)
.
T Consensus 86 G 86 (267)
T KOG4454|consen 86 G 86 (267)
T ss_pred C
Confidence 3
No 84
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.56 E-value=2e-07 Score=86.47 Aligned_cols=87 Identities=26% Similarity=0.264 Sum_probs=77.8
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEE--------EEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-C
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEIL--------EAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-P 86 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~--------~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~ 86 (278)
.......-+|||-+|+..+++++|.++|.+++.|. +|.|-+|++|++.||-|.|+|.|...|+.||+.++ +
T Consensus 60 ~~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agk 139 (351)
T KOG1995|consen 60 MADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGK 139 (351)
T ss_pred cccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccc
Confidence 34567888999999999999999999999999886 36788899999999999999999999999999996 6
Q ss_pred ccCCeEEEEEEcccCC
Q 023722 87 VIDGRRANCNLACLGV 102 (278)
Q Consensus 87 ~i~Gr~i~V~~a~~~~ 102 (278)
.+.+..|+|.+|....
T Consensus 140 df~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 140 DFCGNTIKVSLAERRT 155 (351)
T ss_pred cccCCCchhhhhhhcc
Confidence 7999999999996543
No 85
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.53 E-value=6.3e-08 Score=94.03 Aligned_cols=72 Identities=25% Similarity=0.341 Sum_probs=64.4
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~ 94 (278)
.+...++|+|-|||..+++++|+++|+.||+|++|+.... .++.+||+|.|..+|++|+++++ .+|-|++|+
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4677899999999999999999999999999999765443 57899999999999999999998 679898887
No 86
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.51 E-value=8.7e-08 Score=84.30 Aligned_cols=69 Identities=29% Similarity=0.601 Sum_probs=62.4
Q ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcc
Q 023722 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLAC 99 (278)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a~ 99 (278)
.+|||++|++.+.+++|.+||.+||+|.+|.+. .||+||+|.|..+|+.||..++ ++|.+.++.|+++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccc
Confidence 579999999999999999999999999999874 4699999999999999999997 66888888888874
No 87
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.34 E-value=3.7e-06 Score=65.29 Aligned_cols=78 Identities=18% Similarity=0.231 Sum_probs=65.9
Q ss_pred cEEEECCCCCCCCHHHHHHHHHh--cCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-Ccc----CCeEEEE
Q 023722 23 TKVFVGGLAWETQKETMEKYFEQ--FGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVI----DGRRANC 95 (278)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~--fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i----~Gr~i~V 95 (278)
++|.|.|||...|.++|.+++.. .|+...+.++.|..+..+.|||||.|.+++.+.+-.+..+ ..+ ..+.++|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999999965 3677788899998899999999999999999999998885 333 3566788
Q ss_pred EEccc
Q 023722 96 NLACL 100 (278)
Q Consensus 96 ~~a~~ 100 (278)
.+|+.
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 87753
No 88
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.15 E-value=3.9e-06 Score=83.73 Aligned_cols=82 Identities=20% Similarity=0.338 Sum_probs=71.8
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecC---CCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEE
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDK---ATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRA 93 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk---~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i 93 (278)
+|...++|||+||++.++|+.|-..|.+||.|..|+|+..+ ...+.+-|+||.|-++.++++|++.++ .++....+
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 45677899999999999999999999999999999998654 234566799999999999999999997 55899999
Q ss_pred EEEEcc
Q 023722 94 NCNLAC 99 (278)
Q Consensus 94 ~V~~a~ 99 (278)
++-+.+
T Consensus 250 K~gWgk 255 (877)
T KOG0151|consen 250 KLGWGK 255 (877)
T ss_pred eecccc
Confidence 988874
No 89
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.13 E-value=3.1e-06 Score=82.73 Aligned_cols=90 Identities=23% Similarity=0.435 Sum_probs=80.7
Q ss_pred CCCCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCeE
Q 023722 14 AGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRR 92 (278)
Q Consensus 14 ~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~Gr~ 92 (278)
.....-....+|||++|+..+++++++++++.||.++...+..|..++.+|||+|.+|.|......||..+|.+ +.+++
T Consensus 281 ~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~ 360 (500)
T KOG0120|consen 281 ASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKK 360 (500)
T ss_pred cccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCce
Confidence 34455567789999999999999999999999999999999999999999999999999999999999999955 88899
Q ss_pred EEEEEcccCCC
Q 023722 93 ANCNLACLGVQ 103 (278)
Q Consensus 93 i~V~~a~~~~~ 103 (278)
|.|..|.....
T Consensus 361 lvvq~A~~g~~ 371 (500)
T KOG0120|consen 361 LVVQRAIVGAS 371 (500)
T ss_pred eEeehhhccch
Confidence 99999876543
No 90
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.10 E-value=8.7e-06 Score=78.42 Aligned_cols=80 Identities=21% Similarity=0.275 Sum_probs=66.5
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHHhcCCEEE-EEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEc
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILE-AVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~-v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i~V~~a 98 (278)
.....|-+.+||+.|+|+||.++|+-.-.+.. |.++.|+ .+++.|-|||.|++.++|++||...+..|..|-|+|..+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence 46678889999999999999999987643433 3445554 477999999999999999999999888899999999887
Q ss_pred cc
Q 023722 99 CL 100 (278)
Q Consensus 99 ~~ 100 (278)
..
T Consensus 180 s~ 181 (510)
T KOG4211|consen 180 SR 181 (510)
T ss_pred HH
Confidence 63
No 91
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.03 E-value=2.8e-05 Score=58.55 Aligned_cols=67 Identities=15% Similarity=0.270 Sum_probs=47.0
Q ss_pred cEEEECCCCCCCCHHH----HHHHHHhcC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCeEEEEE
Q 023722 23 TKVFVGGLAWETQKET----MEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANCN 96 (278)
Q Consensus 23 ~~lfVgnLp~~~tee~----L~~~F~~fG-~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~Gr~i~V~ 96 (278)
+-|+|.|||.+.+... |+++++-|| +|.+|. .+-|+|.|.+.+.|.+|++.++.| +.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 5699999999888765 556677776 666652 347999999999999999999865 999999999
Q ss_pred Ecc
Q 023722 97 LAC 99 (278)
Q Consensus 97 ~a~ 99 (278)
+..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 884
No 92
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.99 E-value=7.6e-06 Score=75.40 Aligned_cols=81 Identities=26% Similarity=0.408 Sum_probs=71.4
Q ss_pred CCCccEEE-ECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeEEEEEE
Q 023722 19 DTTYTKVF-VGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNL 97 (278)
Q Consensus 19 ~~~~~~lf-VgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i~V~~ 97 (278)
.....++| |++|+.++++++|+.+|..+|+|..+++..++.++..+||++|.|.+.++..+++....+.|.++.+.+..
T Consensus 181 ~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 181 SGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEE 260 (285)
T ss_pred cCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCccccccc
Confidence 33445566 99999999999999999999999999999999999999999999999999999988733669999888877
Q ss_pred cc
Q 023722 98 AC 99 (278)
Q Consensus 98 a~ 99 (278)
..
T Consensus 261 ~~ 262 (285)
T KOG4210|consen 261 DE 262 (285)
T ss_pred CC
Confidence 74
No 93
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.98 E-value=6.3e-05 Score=71.22 Aligned_cols=73 Identities=15% Similarity=0.269 Sum_probs=66.3
Q ss_pred ccEEEECCCCCC-CCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcc
Q 023722 22 YTKVFVGGLAWE-TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLAC 99 (278)
Q Consensus 22 ~~~lfVgnLp~~-~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a~ 99 (278)
...|.|.||.++ +|.+.|..+|.-||+|.+|+|+.+| |.-|+|.+.|...|+-|++.++ +.|.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 688999999765 9999999999999999999999886 3579999999999999999997 67999999999985
No 94
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.96 E-value=2.1e-06 Score=83.50 Aligned_cols=85 Identities=21% Similarity=0.300 Sum_probs=77.0
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeEEEEE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i~V~ 96 (278)
-++.+.++||+--|...+++.+|.++|+.+|+|..|.|+.|+.++++||.++|+|.|.+++..||...+..+.|..|.|.
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq 253 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQ 253 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEec
Confidence 45567789999999999999999999999999999999999999999999999999999999999777788999999998
Q ss_pred EcccC
Q 023722 97 LACLG 101 (278)
Q Consensus 97 ~a~~~ 101 (278)
.....
T Consensus 254 ~sEae 258 (549)
T KOG0147|consen 254 LSEAE 258 (549)
T ss_pred ccHHH
Confidence 87543
No 95
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.82 E-value=3.4e-05 Score=60.79 Aligned_cols=70 Identities=29% Similarity=0.423 Sum_probs=44.4
Q ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-C-----ccCCeEEEEE
Q 023722 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-P-----VIDGRRANCN 96 (278)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~-----~i~Gr~i~V~ 96 (278)
+-|.|.++...++.++|+++|++||+|..|.+.+.-. -|+|.|.+.++|++|++.+. . .|.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 3578888999999999999999999999999876532 69999999999999999873 2 3677766665
Q ss_pred Ec
Q 023722 97 LA 98 (278)
Q Consensus 97 ~a 98 (278)
.-
T Consensus 76 vL 77 (105)
T PF08777_consen 76 VL 77 (105)
T ss_dssp --
T ss_pred EC
Confidence 54
No 96
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.81 E-value=1.3e-05 Score=70.62 Aligned_cols=73 Identities=22% Similarity=0.327 Sum_probs=63.5
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~ 96 (278)
...+.+.|+|.+|..++.+.+|++.|+.+|++....+. ++++||+|.+.+++.+||+.++ .+|.++.|.+.
T Consensus 95 p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~--------~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 95 PSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR--------RNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred cccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh--------ccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence 45778999999999999999999999999999555442 4589999999999999999996 66999999994
Q ss_pred Ec
Q 023722 97 LA 98 (278)
Q Consensus 97 ~a 98 (278)
..
T Consensus 167 ~~ 168 (216)
T KOG0106|consen 167 KN 168 (216)
T ss_pred cc
Confidence 44
No 97
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.73 E-value=8.3e-05 Score=51.34 Aligned_cols=52 Identities=23% Similarity=0.385 Sum_probs=41.9
Q ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHH
Q 023722 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKAC 81 (278)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai 81 (278)
+.|-|.+.+.+..+ ++.++|.+||+|.++.+..+ +-+.+|+|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 56788898877654 45558999999999988633 338999999999999985
No 98
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.00016 Score=70.26 Aligned_cols=69 Identities=32% Similarity=0.355 Sum_probs=63.6
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHH-hcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhc
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFE-QFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA 84 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~-~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~ 84 (278)
++.-+..++||||+||.-++-++|..+|+ -||.|+-|-|-+|++-+-+||-+-|+|.+..+-.+||+.-
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsar 433 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISAR 433 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhh
Confidence 45567789999999999999999999998 6999999999999888999999999999999999999975
No 99
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.61 E-value=7.5e-05 Score=71.04 Aligned_cols=70 Identities=21% Similarity=0.225 Sum_probs=59.3
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeec---CCCC--C--------ccceEEEEeCCHHHHHHHHHhc
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITD---KATG--R--------SKGYGFVTFREPEAAMKACVDA 84 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~d---k~tg--~--------skG~aFV~F~~~~~A~~Ai~~~ 84 (278)
++...++|.+-|||.+-.-+.|.++|..+|.|+.|+|+.. +.+. . .+-+|||+|++.+.|.+|.+.+
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3458899999999999888999999999999999999876 3221 1 2568999999999999999999
Q ss_pred CCc
Q 023722 85 APV 87 (278)
Q Consensus 85 ~~~ 87 (278)
+.+
T Consensus 307 ~~e 309 (484)
T KOG1855|consen 307 NPE 309 (484)
T ss_pred chh
Confidence 754
No 100
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.58 E-value=6.2e-05 Score=71.27 Aligned_cols=73 Identities=19% Similarity=0.344 Sum_probs=61.5
Q ss_pred CccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC---CccCCeEEEEEE
Q 023722 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA---PVIDGRRANCNL 97 (278)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~---~~i~Gr~i~V~~ 97 (278)
..+.|.++||||+++|++|-+++..||+|..+.+++.++ -+|++|.|.++|...+.... ..+.++.|.|.+
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~ 100 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQY 100 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcceeehh
Confidence 568899999999999999999999999999999987754 69999999999877444442 358888888877
Q ss_pred cc
Q 023722 98 AC 99 (278)
Q Consensus 98 a~ 99 (278)
+.
T Consensus 101 sn 102 (492)
T KOG1190|consen 101 SN 102 (492)
T ss_pred hh
Confidence 54
No 101
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.50 E-value=0.0001 Score=64.96 Aligned_cols=63 Identities=14% Similarity=0.250 Sum_probs=49.0
Q ss_pred CCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC
Q 023722 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA 85 (278)
Q Consensus 19 ~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~ 85 (278)
..-..+|||.||..+++|++||.+|+.|-....++|... + --..+||+|++.+.|+.|+..+.
T Consensus 207 ~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~---~-g~~vaf~~~~~~~~at~am~~lq 269 (284)
T KOG1457|consen 207 ARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR---G-GMPVAFADFEEIEQATDAMNHLQ 269 (284)
T ss_pred chhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC---C-CcceEeecHHHHHHHHHHHHHhh
Confidence 345678999999999999999999999976666665322 1 12378999998888888887763
No 102
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.42 E-value=0.00083 Score=63.20 Aligned_cols=81 Identities=17% Similarity=0.197 Sum_probs=69.9
Q ss_pred CCCCCCCCccEEEECCCCCC-CCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCe
Q 023722 14 AGQFGDTTYTKVFVGGLAWE-TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGR 91 (278)
Q Consensus 14 ~~~~~~~~~~~lfVgnLp~~-~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr 91 (278)
+.+.+..+.+.+.|-+|+.. ++-+.|..+|..||.|++|++++.| .|-+.|++.|..++++|+..+| ..+.|.
T Consensus 279 a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~ 353 (494)
T KOG1456|consen 279 ASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGG 353 (494)
T ss_pred CCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccc
Confidence 33466778889999999865 7788999999999999999999875 5689999999999999999997 448999
Q ss_pred EEEEEEcc
Q 023722 92 RANCNLAC 99 (278)
Q Consensus 92 ~i~V~~a~ 99 (278)
+|+|..++
T Consensus 354 kl~v~~Sk 361 (494)
T KOG1456|consen 354 KLNVCVSK 361 (494)
T ss_pred eEEEeecc
Confidence 99998874
No 103
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.41 E-value=0.00037 Score=64.71 Aligned_cols=77 Identities=22% Similarity=0.411 Sum_probs=59.3
Q ss_pred cEEEECCCCCCCCHHH----H--HHHHHhcCCEEEEEEeecCCCC-Cccce--EEEEeCCHHHHHHHHHhcC-CccCCeE
Q 023722 23 TKVFVGGLAWETQKET----M--EKYFEQFGEILEAVVITDKATG-RSKGY--GFVTFREPEAAMKACVDAA-PVIDGRR 92 (278)
Q Consensus 23 ~~lfVgnLp~~~tee~----L--~~~F~~fG~I~~v~i~~dk~tg-~skG~--aFV~F~~~~~A~~Ai~~~~-~~i~Gr~ 92 (278)
.-+||-+|++.+..|+ | .++|.+||+|.+|.|.+...+- ...+. .+|+|.+.|+|.+||.+.+ ..+|||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 4578888988876665 3 5899999999999887653111 11222 3899999999999999997 5699999
Q ss_pred EEEEEcc
Q 023722 93 ANCNLAC 99 (278)
Q Consensus 93 i~V~~a~ 99 (278)
|++.+..
T Consensus 195 lkatYGT 201 (480)
T COG5175 195 LKATYGT 201 (480)
T ss_pred EeeecCc
Confidence 9988764
No 104
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.40 E-value=0.00061 Score=66.30 Aligned_cols=68 Identities=25% Similarity=0.456 Sum_probs=52.3
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCC---CCccc---eEEEEeCCHHHHHHHHHhc
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKAT---GRSKG---YGFVTFREPEAAMKACVDA 84 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~t---g~skG---~aFV~F~~~~~A~~Ai~~~ 84 (278)
.....-.+|||||+|||+++|++|...|..||.+ .|++....+. --+|| |.|+.|+++.++.+-|.+.
T Consensus 253 ~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 253 YRSPRYSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred CCccccccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 3445668999999999999999999999999975 4455532211 23567 9999999999988876665
No 105
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.37 E-value=0.00076 Score=52.70 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=52.0
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEE-EeecC------CCCCccceEEEEeCCHHHHHHHHHhcCCccCCeE
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAV-VITDK------ATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRR 92 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~-i~~dk------~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~ 92 (278)
...+-|.|=+.|++ ....|.++|++||+|.+.. +.++. .......+-.|+|+++.+|++||.+...+|+|..
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~ 82 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSL 82 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCE
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcE
Confidence 45566888899988 6677888999999998875 11110 0011234889999999999999999888888754
Q ss_pred -EEEEEcc
Q 023722 93 -ANCNLAC 99 (278)
Q Consensus 93 -i~V~~a~ 99 (278)
+-|...+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 4566653
No 106
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.33 E-value=0.00065 Score=68.21 Aligned_cols=83 Identities=16% Similarity=0.260 Sum_probs=67.7
Q ss_pred CCCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEE
Q 023722 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRA 93 (278)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i 93 (278)
+.+...-.+.|-|.|+|++++-|||.++|..|-.+-.-.+++-.+.|+..|-|-|.|++.++|.+|.+.++ +.|..|+|
T Consensus 860 ~~~~~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V 939 (944)
T KOG4307|consen 860 ELIKSPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVV 939 (944)
T ss_pred HhcCCCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeE
Confidence 34555566688999999999999999999999755443334444569999999999999999999999997 56999988
Q ss_pred EEEE
Q 023722 94 NCNL 97 (278)
Q Consensus 94 ~V~~ 97 (278)
.+.+
T Consensus 940 ~l~i 943 (944)
T KOG4307|consen 940 SLRI 943 (944)
T ss_pred EEEe
Confidence 8764
No 107
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.23 E-value=0.0012 Score=58.23 Aligned_cols=75 Identities=23% Similarity=0.293 Sum_probs=60.9
Q ss_pred CCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccC-CeEEEEE
Q 023722 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVID-GRRANCN 96 (278)
Q Consensus 19 ~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~-Gr~i~V~ 96 (278)
......||+.|||.+++.+.|..+|++|.-.++|+++..+ ++.+||+|.+...+..|...+. ..|. ...+.|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 4677889999999999999999999999999999988764 6799999999888888887774 2233 5555665
Q ss_pred Ec
Q 023722 97 LA 98 (278)
Q Consensus 97 ~a 98 (278)
.+
T Consensus 218 ~a 219 (221)
T KOG4206|consen 218 FA 219 (221)
T ss_pred cc
Confidence 54
No 108
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.22 E-value=0.0019 Score=45.99 Aligned_cols=58 Identities=22% Similarity=0.351 Sum_probs=48.5
Q ss_pred CCCccEEEECCCCCCCCHHHHHHHHHhc---CCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhc
Q 023722 19 DTTYTKVFVGGLAWETQKETMEKYFEQF---GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA 84 (278)
Q Consensus 19 ~~~~~~lfVgnLp~~~tee~L~~~F~~f---G~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~ 84 (278)
.....+|+|.+|+ +++.++|+.+|..| ....+|+++-|. -|-|.|.|.+.|.+||..+
T Consensus 2 ~~rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 2 TIRPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred cceeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 3456789999996 68889999999988 246789999886 4889999999999999764
No 109
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.04 E-value=0.0079 Score=51.89 Aligned_cols=63 Identities=21% Similarity=0.209 Sum_probs=56.3
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA 85 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~ 85 (278)
+.......+|.|.+||.+-++.+||++..+-|+|....+.+| |.+.|+|...|+.+-||+.+.
T Consensus 109 ppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld 171 (241)
T KOG0105|consen 109 PPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLD 171 (241)
T ss_pred CcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhc
Confidence 334456678999999999999999999999999999999887 379999999999999999985
No 110
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.002 Score=63.50 Aligned_cols=79 Identities=25% Similarity=0.286 Sum_probs=61.0
Q ss_pred CCccEEEECCCCCC--CCHH----HHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccC-Ce
Q 023722 20 TTYTKVFVGGLAWE--TQKE----TMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVID-GR 91 (278)
Q Consensus 20 ~~~~~lfVgnLp~~--~tee----~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~-Gr 91 (278)
--..-|+|-|+|-- ..-+ -|.++|+++|+|..+.++.+..+| .+||.|++|.+..+|++|++.+| +.|+ ++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 44567888888742 2222 356889999999999999887655 99999999999999999999997 4444 66
Q ss_pred EEEEEEcc
Q 023722 92 RANCNLAC 99 (278)
Q Consensus 92 ~i~V~~a~ 99 (278)
.+.|++-+
T Consensus 135 tf~v~~f~ 142 (698)
T KOG2314|consen 135 TFFVRLFK 142 (698)
T ss_pred eEEeehhh
Confidence 77776543
No 111
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.76 E-value=0.0058 Score=57.05 Aligned_cols=80 Identities=23% Similarity=0.289 Sum_probs=62.4
Q ss_pred CCCCCccEEEECCCC----CCCC-------HHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC
Q 023722 17 FGDTTYTKVFVGGLA----WETQ-------KETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA 85 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp----~~~t-------ee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~ 85 (278)
.-....++|.|.||= .+.+ +++|++-.++||.|.+|.|.-.. +.|.+-|.|.+.++|..||+.|+
T Consensus 260 sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~h----PdGvvtV~f~n~eeA~~ciq~m~ 335 (382)
T KOG1548|consen 260 SKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRH----PDGVVTVSFRNNEEADQCIQTMD 335 (382)
T ss_pred ccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccC----CCceeEEEeCChHHHHHHHHHhc
Confidence 334556888898871 2233 45677788999999999876432 47899999999999999999998
Q ss_pred C-ccCCeEEEEEEccc
Q 023722 86 P-VIDGRRANCNLACL 100 (278)
Q Consensus 86 ~-~i~Gr~i~V~~a~~ 100 (278)
. .++||.|..++...
T Consensus 336 GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 336 GRWFDGRQLTASIWDG 351 (382)
T ss_pred CeeecceEEEEEEeCC
Confidence 4 59999998887753
No 112
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.75 E-value=0.0013 Score=59.11 Aligned_cols=72 Identities=15% Similarity=0.264 Sum_probs=59.2
Q ss_pred CccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCC--------CCcc----ceEEEEeCCHHHHHHHHHhcC-Cc
Q 023722 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKAT--------GRSK----GYGFVTFREPEAAMKACVDAA-PV 87 (278)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~t--------g~sk----G~aFV~F~~~~~A~~Ai~~~~-~~ 87 (278)
..-.||+++||+.++...|+++|+.||+|-+|.|.....+ +.++ --+.|+|.+...|.++.+.|| ..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4567999999999999999999999999999998766544 2222 235799999999999999987 44
Q ss_pred cCCeE
Q 023722 88 IDGRR 92 (278)
Q Consensus 88 i~Gr~ 92 (278)
|.|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 88775
No 113
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.74 E-value=0.0041 Score=61.20 Aligned_cols=62 Identities=15% Similarity=0.174 Sum_probs=50.1
Q ss_pred HHHHHHHhcCCEEEEEEeecC---CCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcc
Q 023722 38 TMEKYFEQFGEILEAVVITDK---ATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLAC 99 (278)
Q Consensus 38 ~L~~~F~~fG~I~~v~i~~dk---~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a~ 99 (278)
+|+..+.+||.|..|+|.++- +..-..|-.||+|.+.+++++|.++|+ .++.+|.|.+.+-.
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 455666799999999998872 223345778999999999999999997 56999999888763
No 114
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.64 E-value=0.0075 Score=50.13 Aligned_cols=56 Identities=25% Similarity=0.382 Sum_probs=45.1
Q ss_pred HHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEcccC
Q 023722 38 TMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACLG 101 (278)
Q Consensus 38 ~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i~V~~a~~~ 101 (278)
+|.+.|..||++.-|++..+ --+|+|.+-++|.+|+.....+|+|+.|+|+++.+.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCcc
Confidence 56677888999988888765 479999999999999999888899999999998653
No 115
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.57 E-value=0.0031 Score=59.61 Aligned_cols=77 Identities=21% Similarity=0.330 Sum_probs=62.7
Q ss_pred cEEEECCCCCCCCHHHHHHHHHhcCC-EEE--EEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCeEEEEEEc
Q 023722 23 TKVFVGGLAWETQKETMEKYFEQFGE-ILE--AVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANCNLA 98 (278)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~-I~~--v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~Gr~i~V~~a 98 (278)
.-|-+++||.+.+.|+|..+|..|-. |.. |.+..+ ..|+..|-|||+|.+.|+|..|....++. ...|-|+|..+
T Consensus 281 dcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 281 DCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred CeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 34778999999999999999998863 333 566655 35899999999999999999998888644 56899999888
Q ss_pred cc
Q 023722 99 CL 100 (278)
Q Consensus 99 ~~ 100 (278)
+.
T Consensus 360 S~ 361 (508)
T KOG1365|consen 360 SV 361 (508)
T ss_pred cH
Confidence 64
No 116
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.38 E-value=0.0019 Score=66.17 Aligned_cols=78 Identities=15% Similarity=0.233 Sum_probs=67.4
Q ss_pred ccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeEEEEEEccc
Q 023722 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLACL 100 (278)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~-~i~Gr~i~V~~a~~ 100 (278)
-.+|||.|+|+..|+++|+.+++++|.+.++.+++.+. |+.||.+||.|.+..++.+++..... .++-+.++|....+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~-gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA-GKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhc-cccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 57899999999999999999999999999998887764 89999999999999999999888763 36666677777655
No 117
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.34 E-value=0.0053 Score=58.17 Aligned_cols=79 Identities=15% Similarity=0.153 Sum_probs=63.8
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCC---CCccceEEEEeCCHHHHHHHHHhcCCccCCeEEEEE
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKAT---GRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~t---g~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i~V~ 96 (278)
.....|-|.||.+.++.++|+.||.-.|+|.++.|...... ....-.|||.|.|...+..|-...|.++-++.|.|.
T Consensus 5 ~~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~ 84 (479)
T KOG4676|consen 5 SSLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVR 84 (479)
T ss_pred CCCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEE
Confidence 34558999999999999999999999999999988753221 334458999999999999988888877666766666
Q ss_pred Ec
Q 023722 97 LA 98 (278)
Q Consensus 97 ~a 98 (278)
..
T Consensus 85 p~ 86 (479)
T KOG4676|consen 85 PY 86 (479)
T ss_pred ec
Confidence 55
No 118
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.31 E-value=0.003 Score=59.76 Aligned_cols=77 Identities=22% Similarity=0.257 Sum_probs=57.4
Q ss_pred CccEEEECCCCCCCCHHHHHHHHHh---c-CCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeEEEEE
Q 023722 21 TYTKVFVGGLAWETQKETMEKYFEQ---F-GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (278)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~---f-G~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i~V~ 96 (278)
..-.|-.++||.++++.|+.++|.. . +..+.|-+++. ..++..|-|||.|..+++|+.||.+....|.-|-|++.
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElF 238 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELF 238 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3445667899999999999999952 1 23445544443 35889999999999999999999987655666666654
Q ss_pred Ec
Q 023722 97 LA 98 (278)
Q Consensus 97 ~a 98 (278)
.+
T Consensus 239 RS 240 (508)
T KOG1365|consen 239 RS 240 (508)
T ss_pred HH
Confidence 43
No 119
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.25 E-value=0.0027 Score=60.65 Aligned_cols=77 Identities=22% Similarity=0.336 Sum_probs=59.0
Q ss_pred cEEEECCCCCCCCHHHHHHHHHhcC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC--CccCCeEEEEEEcc
Q 023722 23 TKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA--PVIDGRRANCNLAC 99 (278)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG-~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~--~~i~Gr~i~V~~a~ 99 (278)
.++|++||.+.++.++|+.+|..-- ....-.++ ..||+||...|...+.+|++.++ .++.|++++|...-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 5799999999999999999996431 01111111 25799999999999999999997 35999999999887
Q ss_pred cCCCCCC
Q 023722 100 LGVQRSK 106 (278)
Q Consensus 100 ~~~~~~~ 106 (278)
++..+.+
T Consensus 75 ~kkqrsr 81 (584)
T KOG2193|consen 75 PKKQRSR 81 (584)
T ss_pred hHHHHhh
Confidence 6655443
No 120
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.11 E-value=0.003 Score=56.75 Aligned_cols=62 Identities=29% Similarity=0.326 Sum_probs=48.7
Q ss_pred HHHHHHHH-hcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcc
Q 023722 37 ETMEKYFE-QFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLAC 99 (278)
Q Consensus 37 e~L~~~F~-~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a~ 99 (278)
|+|...|+ +||+|++++|..+. .-..+|-.+|.|...++|++|++.+| .-+.|+.|.+.+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34444454 99999999776542 23456789999999999999999997 45999999988875
No 121
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.11 E-value=0.013 Score=55.30 Aligned_cols=83 Identities=22% Similarity=0.232 Sum_probs=67.6
Q ss_pred ccCCCCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhc--CC-cc
Q 023722 12 AGAGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA--AP-VI 88 (278)
Q Consensus 12 ~~~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~--~~-~i 88 (278)
+..++-....+-.|.|++|-..++|.+|.+.++.||.|.-|.++..+. -+.|+|+|.+.|++|+..- +. .|
T Consensus 21 ~~~dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r------~alvefedi~~akn~Vnfaa~n~i~i 94 (494)
T KOG1456|consen 21 DNADPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR------QALVEFEDIEGAKNCVNFAADNQIYI 94 (494)
T ss_pred cCCCCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccc------eeeeeeccccchhhheehhccCcccc
Confidence 344555566677899999999999999999999999999998776532 6999999999999988765 33 38
Q ss_pred CCeEEEEEEccc
Q 023722 89 DGRRANCNLACL 100 (278)
Q Consensus 89 ~Gr~i~V~~a~~ 100 (278)
.|+..-++++.+
T Consensus 95 ~gq~Al~NySts 106 (494)
T KOG1456|consen 95 AGQQALFNYSTS 106 (494)
T ss_pred cCchhhcccchh
Confidence 888888887743
No 122
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.02 E-value=0.039 Score=45.78 Aligned_cols=77 Identities=18% Similarity=0.231 Sum_probs=59.7
Q ss_pred CCCCCCccEEEECCCCCCCC-HHHH---HHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCe
Q 023722 16 QFGDTTYTKVFVGGLAWETQ-KETM---EKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGR 91 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~t-ee~L---~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr 91 (278)
.-.|....+|.|.=|..++. .||| ...++.||+|.+|.+.- |--|.|.|+|..+|=+|+.++....-|.
T Consensus 80 ~~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s~~pgt 152 (166)
T PF15023_consen 80 NTKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQSRAPGT 152 (166)
T ss_pred cCCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcCCCCCc
Confidence 44577888999987665543 3344 45568899999997742 2359999999999999999998788899
Q ss_pred EEEEEEcc
Q 023722 92 RANCNLAC 99 (278)
Q Consensus 92 ~i~V~~a~ 99 (278)
.+.|++-.
T Consensus 153 m~qCsWqq 160 (166)
T PF15023_consen 153 MFQCSWQQ 160 (166)
T ss_pred eEEeeccc
Confidence 99998864
No 123
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.98 E-value=0.0071 Score=54.41 Aligned_cols=62 Identities=27% Similarity=0.415 Sum_probs=55.9
Q ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC
Q 023722 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA 85 (278)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~ 85 (278)
..|+|.||..-++.|.|++.|+.||+|+..+++.| +.++..+-++|+|...-.+.+|++..+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhc
Confidence 78999999999999999999999999999888777 347788899999999999999998874
No 124
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.94 E-value=0.00034 Score=71.47 Aligned_cols=71 Identities=25% Similarity=0.352 Sum_probs=61.4
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCC
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDG 90 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G 90 (278)
.+..++||.||+..+.+++|+..|..++.|+.+.|.-.+++++.||.|+|+|.+.+.+.+||......+-|
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 34568999999999999999999999998888877666778999999999999999999999987644444
No 125
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.75 E-value=0.01 Score=59.92 Aligned_cols=83 Identities=16% Similarity=0.044 Sum_probs=65.2
Q ss_pred CCCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEE-EEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeE
Q 023722 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILE-AVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRR 92 (278)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~-v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~ 92 (278)
.++...--..|||..||.++++.++-++|.+--.|++ |.|.+. -+++.++-|||+|..++++.+|+.... +.+..|.
T Consensus 427 vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~ 505 (944)
T KOG4307|consen 427 VPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRI 505 (944)
T ss_pred CCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceE
Confidence 4455566788999999999999999999988777777 555544 357788999999999888888777665 4577788
Q ss_pred EEEEEc
Q 023722 93 ANCNLA 98 (278)
Q Consensus 93 i~V~~a 98 (278)
|+|.-.
T Consensus 506 irv~si 511 (944)
T KOG4307|consen 506 IRVDSI 511 (944)
T ss_pred EEeech
Confidence 887643
No 126
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.56 E-value=0.042 Score=50.48 Aligned_cols=63 Identities=21% Similarity=0.318 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCCEEEEEEeecCCCCCcc-ceEEEEeCCHHHHHHHHHhcCC-ccCCeEEEEEEc
Q 023722 36 KETMEKYFEQFGEILEAVVITDKATGRSK-GYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLA 98 (278)
Q Consensus 36 ee~L~~~F~~fG~I~~v~i~~dk~tg~sk-G~aFV~F~~~~~A~~Ai~~~~~-~i~Gr~i~V~~a 98 (278)
|+++++.+++||.|.+|.|..++.--... ---||+|...++|.+|+..+|. .|.||.++.-+-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 45788999999999999988775433322 2379999999999999999984 589998765443
No 127
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.34 E-value=0.027 Score=55.65 Aligned_cols=74 Identities=12% Similarity=0.180 Sum_probs=59.5
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHH--hcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC---CccCCeE
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFE--QFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA---PVIDGRR 92 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~--~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~---~~i~Gr~ 92 (278)
...+.|.|.++.|++.+.+|+||.||+ .|-++.+|++-.+. -=||+|++..||+.|.+.+. ++|-||.
T Consensus 171 p~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKp 243 (684)
T KOG2591|consen 171 PNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKP 243 (684)
T ss_pred cCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcc
Confidence 345567788999999999999999995 47788888776543 26899999999999999984 5688998
Q ss_pred EEEEEc
Q 023722 93 ANCNLA 98 (278)
Q Consensus 93 i~V~~a 98 (278)
|..+++
T Consensus 244 ImARIK 249 (684)
T KOG2591|consen 244 IMARIK 249 (684)
T ss_pred hhhhhh
Confidence 865554
No 128
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.92 E-value=0.0059 Score=63.04 Aligned_cols=78 Identities=18% Similarity=0.340 Sum_probs=60.9
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a 98 (278)
...++||++||+..+++.+|+..|..+|.|++|.|.+.+.. +-.-|+||.|.+.+.+-+|+.++. ..|..-.+++.+.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~-~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIK-TESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCC-cccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 45789999999999999999999999999999999776543 333489999999999988888874 3343333444443
No 129
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.88 E-value=0.033 Score=57.73 Aligned_cols=78 Identities=24% Similarity=0.344 Sum_probs=65.9
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cC--CeEEE
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-ID--GRRAN 94 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~--Gr~i~ 94 (278)
.....+.+||++|..++....|.+.|..||.|..|.+-.. .-|++|.+++...++.|++.+... |. .++|+
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 4567789999999999999999999999999999887433 349999999999999999999643 54 47799
Q ss_pred EEEcccC
Q 023722 95 CNLACLG 101 (278)
Q Consensus 95 V~~a~~~ 101 (278)
|.++...
T Consensus 525 vdla~~~ 531 (975)
T KOG0112|consen 525 VDLASPP 531 (975)
T ss_pred cccccCC
Confidence 9998643
No 130
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.82 E-value=0.13 Score=47.58 Aligned_cols=72 Identities=19% Similarity=0.213 Sum_probs=53.0
Q ss_pred ccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeE-EEEEEccc
Q 023722 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRR-ANCNLACL 100 (278)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~-i~V~~a~~ 100 (278)
+.=|-|-++++.- -..|..+|++||+|++.+...+ --+-.|.|.++.+|+|||.+...+|++.. |-|+.+..
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~n------gNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPSN------GNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecCCC------CceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCC
Confidence 4445555777653 4567788999999998866532 23889999999999999999888888764 45555543
No 131
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.70 E-value=0.16 Score=37.09 Aligned_cols=66 Identities=18% Similarity=0.234 Sum_probs=39.1
Q ss_pred EEEEC-CCCCCCCHHHHHHHHHhcC-----CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 023722 24 KVFVG-GLAWETQKETMEKYFEQFG-----EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (278)
Q Consensus 24 ~lfVg-nLp~~~tee~L~~~F~~fG-----~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~ 96 (278)
+|||. +--..++..+|..++..-. +|-+|+|..+ |.||+... +.++++++.++ ..+.|++++|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEE
Confidence 45553 2234688899999887664 4567777655 89999865 57888999987 56999999998
Q ss_pred Ec
Q 023722 97 LA 98 (278)
Q Consensus 97 ~a 98 (278)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 75
No 132
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.38 E-value=0.051 Score=54.14 Aligned_cols=76 Identities=13% Similarity=0.128 Sum_probs=61.0
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHH-hcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc----cCCeE
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFE-QFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV----IDGRR 92 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~-~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~----i~Gr~ 92 (278)
-....+.|+|.||-.-.|.-+|+.++. .+|.|++. +.|+. |..|||.|.+.++|-+.+..|+.+ -+.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDkI----KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDKI----KSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHHHh----hcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 445678899999999999999999998 56677776 33433 568999999999999999999643 45788
Q ss_pred EEEEEcc
Q 023722 93 ANCNLAC 99 (278)
Q Consensus 93 i~V~~a~ 99 (278)
|.+.+..
T Consensus 514 L~adf~~ 520 (718)
T KOG2416|consen 514 LIADFVR 520 (718)
T ss_pred eEeeecc
Confidence 8888875
No 133
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=94.08 E-value=0.038 Score=51.09 Aligned_cols=80 Identities=20% Similarity=0.238 Sum_probs=69.2
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a 98 (278)
...+++||+++.+.+.+.++..++.+.|.+..+.+........+++++.|+|...+.+..||+... ..+.++.+...+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 357899999999999999999999999988888888877788999999999999999999999886 4677777766665
Q ss_pred c
Q 023722 99 C 99 (278)
Q Consensus 99 ~ 99 (278)
.
T Consensus 166 ~ 166 (285)
T KOG4210|consen 166 T 166 (285)
T ss_pred c
Confidence 4
No 134
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.75 E-value=0.026 Score=52.62 Aligned_cols=80 Identities=29% Similarity=0.420 Sum_probs=57.9
Q ss_pred CccEEEECCCCCCCCHHH-H--HHHHHhcCCEEEEEEeecCCC-CCc--cceEEEEeCCHHHHHHHHHhcCC-ccCCeEE
Q 023722 21 TYTKVFVGGLAWETQKET-M--EKYFEQFGEILEAVVITDKAT-GRS--KGYGFVTFREPEAAMKACVDAAP-VIDGRRA 93 (278)
Q Consensus 21 ~~~~lfVgnLp~~~tee~-L--~~~F~~fG~I~~v~i~~dk~t-g~s--kG~aFV~F~~~~~A~~Ai~~~~~-~i~Gr~i 93 (278)
....+||-+|+....+++ | .+.|.+||.|.+|.+.++.-+ ... ..-++|+|...++|.+||...+. +++++.|
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 345678888887755554 4 378889999999998887621 111 12378999999999999999974 4778887
Q ss_pred EEEEccc
Q 023722 94 NCNLACL 100 (278)
Q Consensus 94 ~V~~a~~ 100 (278)
++.+...
T Consensus 156 ka~~gtt 162 (327)
T KOG2068|consen 156 KASLGTT 162 (327)
T ss_pred HHhhCCC
Confidence 7666643
No 135
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.22 E-value=0.068 Score=51.95 Aligned_cols=71 Identities=20% Similarity=0.168 Sum_probs=54.8
Q ss_pred EEEECCCCCC-CCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEccc
Q 023722 24 KVFVGGLAWE-TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (278)
Q Consensus 24 ~lfVgnLp~~-~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i~V~~a~~ 100 (278)
.|-+.-.+.. -+.++|..+|.+||+|+.|.|-... -.|.|+|.+..+|-+|-......|++|.|+|.+-++
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhccccceecCceeEEEEecC
Confidence 3333333443 3567899999999999999885542 269999999999877776666789999999999865
No 136
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=93.15 E-value=0.28 Score=37.11 Aligned_cols=56 Identities=18% Similarity=0.219 Sum_probs=42.0
Q ss_pred CccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC
Q 023722 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA 85 (278)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~ 85 (278)
...-.+|. +|.++...||.++|+.||.| .|.++.|. -|||.+.+++.+..++..+.
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 34455565 99999999999999999986 45566664 69999999999999988875
No 137
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.71 E-value=0.098 Score=52.72 Aligned_cols=73 Identities=18% Similarity=0.192 Sum_probs=61.4
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V 95 (278)
+......++||+|+-..+.++-++.++..||-|..++..+ |+|.+|.+.....+|+..+. ..++++.+.+
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 3445677899999999999999999999999888775432 99999999999999999986 4588888876
Q ss_pred EEc
Q 023722 96 NLA 98 (278)
Q Consensus 96 ~~a 98 (278)
+..
T Consensus 106 ~~d 108 (668)
T KOG2253|consen 106 NVD 108 (668)
T ss_pred cch
Confidence 664
No 138
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.18 E-value=0.12 Score=44.39 Aligned_cols=81 Identities=16% Similarity=0.120 Sum_probs=46.3
Q ss_pred CCCccEEEECCCCCCCCHHHHHHHHHh-cCCE---EEEEEeecC-CCC-CccceEEEEeCCHHHHHHHHHhcC-Cc-cCC
Q 023722 19 DTTYTKVFVGGLAWETQKETMEKYFEQ-FGEI---LEAVVITDK-ATG-RSKGYGFVTFREPEAAMKACVDAA-PV-IDG 90 (278)
Q Consensus 19 ~~~~~~lfVgnLp~~~tee~L~~~F~~-fG~I---~~v~i~~dk-~tg-~skG~aFV~F~~~~~A~~Ai~~~~-~~-i~G 90 (278)
+....||.|++||+.+||+++.+.++. +++. ..+.-.... ... ....-|+|.|.+.+++..-+..++ +. +|.
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 345679999999999999999986665 5544 333311111 111 123458999999999999888886 33 332
Q ss_pred ----eEEEEEEcc
Q 023722 91 ----RRANCNLAC 99 (278)
Q Consensus 91 ----r~i~V~~a~ 99 (278)
.+..|++|.
T Consensus 84 kg~~~~~~VE~Ap 96 (176)
T PF03467_consen 84 KGNEYPAVVEFAP 96 (176)
T ss_dssp TS-EEEEEEEE-S
T ss_pred CCCCcceeEEEcc
Confidence 234666664
No 139
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=90.83 E-value=2.4 Score=33.60 Aligned_cols=62 Identities=16% Similarity=0.154 Sum_probs=45.8
Q ss_pred ccEEEECCCCCCCCHHHHHHHHHhcC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC
Q 023722 22 YTKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA 85 (278)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~~fG-~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~ 85 (278)
...+.+...+..++.++|..+.+.+- .|+.++|++|. ..++=.+.++|++.++|++-.+..|
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fN 75 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFN 75 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhC
Confidence 34444555566677777876666654 67889999874 2356678999999999999999987
No 140
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=90.61 E-value=0.84 Score=39.53 Aligned_cols=61 Identities=16% Similarity=0.191 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC--Cc-cCCeEEEEEEccc
Q 023722 34 TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA--PV-IDGRRANCNLACL 100 (278)
Q Consensus 34 ~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~--~~-i~Gr~i~V~~a~~ 100 (278)
-..+.|+++|..++.+.+..+++. -+=..|.|.+.++|.+|...++ .. +.|..|+|.++..
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hhHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 345789999999999888877654 2347899999999999999987 44 9999999998843
No 141
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=89.84 E-value=1.6 Score=46.17 Aligned_cols=7 Identities=43% Similarity=1.455 Sum_probs=2.8
Q ss_pred CCCCCCC
Q 023722 126 FQNGGFG 132 (278)
Q Consensus 126 ~~~GG~G 132 (278)
+.+||+|
T Consensus 1189 ysgGGYG 1195 (1282)
T KOG0921|consen 1189 YSGGGYG 1195 (1282)
T ss_pred CCCCCcC
Confidence 3334443
No 142
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=87.68 E-value=0.98 Score=44.86 Aligned_cols=54 Identities=19% Similarity=0.221 Sum_probs=38.4
Q ss_pred CCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC----ccCC-eEEEEEEccc
Q 023722 47 GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP----VIDG-RRANCNLACL 100 (278)
Q Consensus 47 G~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~----~i~G-r~i~V~~a~~ 100 (278)
|.-..+.++.|-.+....|||||.|.+++++.++.++.+. .|+. +.+++.+|+.
T Consensus 414 gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArI 472 (549)
T KOG4660|consen 414 GTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARI 472 (549)
T ss_pred CccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhh
Confidence 3444456666666677889999999999999999999862 2554 3446666653
No 143
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=86.59 E-value=0.47 Score=49.33 Aligned_cols=71 Identities=17% Similarity=0.213 Sum_probs=59.3
Q ss_pred EEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-Cc--cCCeEEEEEEccc
Q 023722 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PV--IDGRRANCNLACL 100 (278)
Q Consensus 24 ~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~--i~Gr~i~V~~a~~ 100 (278)
+..+.|++-..+...|..+|++||+|.+++.++|-+ .+.|+|.+.+.|-.|++.+. ++ +.|-..+|.+|+.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 445566677788899999999999999999988854 89999999999999999984 44 6688888888854
No 144
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=85.03 E-value=13 Score=38.28 Aligned_cols=69 Identities=9% Similarity=-0.008 Sum_probs=48.3
Q ss_pred ccEEEEC-CCCCCCCHHHHHHHHHhcCCE-----EEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 023722 22 YTKVFVG-GLAWETQKETMEKYFEQFGEI-----LEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (278)
Q Consensus 22 ~~~lfVg-nLp~~~tee~L~~~F~~fG~I-----~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~ 94 (278)
..++||. +=...++..+|-.++..-+.| -.|+|..+ |.||+... +.+.+.++.++ ..|.|++|.
T Consensus 486 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~--------~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~ 556 (629)
T PRK11634 486 MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS--------HSTIELPK-GMPGEVLQHFTRTRILNKPMN 556 (629)
T ss_pred CEEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC--------ceEEEcCh-hhHHHHHHHhccccccCCceE
Confidence 3445553 223468888888888665544 45666544 89999854 56778888885 569999999
Q ss_pred EEEcc
Q 023722 95 CNLAC 99 (278)
Q Consensus 95 V~~a~ 99 (278)
|+.+.
T Consensus 557 ~~~~~ 561 (629)
T PRK11634 557 MQLLG 561 (629)
T ss_pred EEECC
Confidence 99874
No 145
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=82.41 E-value=4.5 Score=37.37 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=35.8
Q ss_pred ccEEEECCCCCCCCHHHHHHHHHhcCCE-EEEEEeecCCCCCccceEEEEeCCH
Q 023722 22 YTKVFVGGLAWETQKETMEKYFEQFGEI-LEAVVITDKATGRSKGYGFVTFREP 74 (278)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~~fG~I-~~v~i~~dk~tg~skG~aFV~F~~~ 74 (278)
.+.|+|+||+.++.-.||+..+.+.+.+ .++.+. -++|-||++|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCc
Confidence 4559999999999999999999887643 344332 2466799999765
No 146
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=80.56 E-value=3.6 Score=29.90 Aligned_cols=59 Identities=12% Similarity=0.159 Sum_probs=44.8
Q ss_pred HHHHHHHHhcC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 023722 37 ETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (278)
Q Consensus 37 e~L~~~F~~fG-~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a 98 (278)
++|++.|.+.| +++.|..+..+++..+--.-||+.....+... .++ +.|.++++.|+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~ 62 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecC
Confidence 46888888888 78899888888877777788998876544333 334 4588999888776
No 147
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=79.19 E-value=9.8 Score=27.37 Aligned_cols=53 Identities=13% Similarity=0.204 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeEEE
Q 023722 33 ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRAN 94 (278)
Q Consensus 33 ~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~-~i~Gr~i~ 94 (278)
.++-++||..+.+|. ..+| ..|+ .| =||.|.+.++|++|.+..+. .+...++.
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I--~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRI--RDDR-----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCC-cceE--EecC-----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 578899999999996 3343 3453 22 47999999999999998863 35554443
No 148
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=79.19 E-value=5.3 Score=28.84 Aligned_cols=60 Identities=12% Similarity=0.146 Sum_probs=44.2
Q ss_pred HHHHHHHHhcC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcc
Q 023722 37 ETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLAC 99 (278)
Q Consensus 37 e~L~~~F~~fG-~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a~ 99 (278)
++|++.|...| +|.+|.-+..+.+.+.--.-||+++...+..+ .++ +.|.+.+|+|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCC
Confidence 57888888888 78888888887677777888999876655322 334 45889998888763
No 149
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=77.57 E-value=0.3 Score=46.65 Aligned_cols=63 Identities=16% Similarity=0.057 Sum_probs=51.4
Q ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccC
Q 023722 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVID 89 (278)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~ 89 (278)
++|+|.+|...+...++-++|+.+|+|....+-... ..-+|-|+|....+...|++..+.++.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~----~s~~c~~sf~~qts~~halr~~gre~k 214 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTASKS----RSSSCSHSFRKQTSSKHALRSHGRERK 214 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccC----CCcchhhhHhhhhhHHHHHHhcchhhh
Confidence 889999999999999999999999999887664332 244777999998888888888764433
No 150
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=77.22 E-value=6.3 Score=36.50 Aligned_cols=81 Identities=10% Similarity=0.144 Sum_probs=60.8
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecC-------CCCCccceEEEEeCCHHHHHHHH----Hhc---C
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDK-------ATGRSKGYGFVTFREPEAAMKAC----VDA---A 85 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk-------~tg~skG~aFV~F~~~~~A~~Ai----~~~---~ 85 (278)
-..|.|.+.||..+++-..+-..|.+||.|+.|.++.+. +..+.+....+.|-+++.+..-- +.+ .
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 345678889999999988888999999999999998775 12234457888999988876532 223 3
Q ss_pred CccCCeEEEEEEccc
Q 023722 86 PVIDGRRANCNLACL 100 (278)
Q Consensus 86 ~~i~Gr~i~V~~a~~ 100 (278)
..+.-..|.+++...
T Consensus 93 ~~L~S~~L~lsFV~l 107 (309)
T PF10567_consen 93 TKLKSESLTLSFVSL 107 (309)
T ss_pred HhcCCcceeEEEEEE
Confidence 458888888887764
No 151
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=76.45 E-value=0.55 Score=41.73 Aligned_cols=69 Identities=26% Similarity=0.277 Sum_probs=58.1
Q ss_pred CCCCCCCccEEEECC----CCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhc
Q 023722 15 GQFGDTTYTKVFVGG----LAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA 84 (278)
Q Consensus 15 ~~~~~~~~~~lfVgn----Lp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~ 84 (278)
.-+++....+++.|+ |...++++.+.+.|+.-+.|+.+++.++.+ ++.+-+.||++.-..+.-.++...
T Consensus 73 ~l~~~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y 145 (267)
T KOG4454|consen 73 DLEEDEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLY 145 (267)
T ss_pred hhccchhhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhh
Confidence 346777788999999 999999999999999999999999999876 888999999887666666666543
No 152
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.73 E-value=8.1 Score=37.33 Aligned_cols=60 Identities=15% Similarity=0.109 Sum_probs=49.3
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHhcC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhc
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA 84 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~fG-~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~ 84 (278)
+.+-.+.|=|-++|.+...+||...|+.|+ .-.+|+|+.|+ .+|-.|.+...|.+||-.-
T Consensus 387 e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~k 447 (528)
T KOG4483|consen 387 ESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLK 447 (528)
T ss_pred cccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhcc
Confidence 344567788889999999999999999997 45678888775 6999999999999988663
No 153
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=68.66 E-value=20 Score=27.09 Aligned_cols=56 Identities=13% Similarity=0.173 Sum_probs=39.7
Q ss_pred EECCCCCCCCHHHHHHHHHh-cC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhc
Q 023722 26 FVGGLAWETQKETMEKYFEQ-FG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA 84 (278)
Q Consensus 26 fVgnLp~~~tee~L~~~F~~-fG-~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~ 84 (278)
|+-.++.+.+..+|++.+++ |+ +|.+|..+.-+. +.. =|+|++.+-++|.+....+
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~-~~K--KA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK-GEK--KAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-CcE--EEEEEeCCCCcHHHHHHhh
Confidence 33346889999999999987 66 677776655432 222 4999999888887765443
No 154
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=66.82 E-value=21 Score=35.08 Aligned_cols=62 Identities=11% Similarity=0.162 Sum_probs=51.5
Q ss_pred ccEEEECCCCCCCCHHHHHHHHHhc-CCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC
Q 023722 22 YTKVFVGGLAWETQKETMEKYFEQF-GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA 85 (278)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~~f-G~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~ 85 (278)
.+.|+|=-+|-.++-.||-.|...| -.|.+++|++|.. -.+=..+|+|++.++|....+.+|
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efN 136 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFN 136 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcC
Confidence 7888998899999999999988665 4789999999742 223357899999999999999987
No 155
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=63.66 E-value=1 Score=43.59 Aligned_cols=76 Identities=16% Similarity=0.199 Sum_probs=60.6
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEE-eecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVV-ITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNL 97 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i-~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~ 97 (278)
...+++-|.|+++...++-|..|+.+||.++.|.. ..|..|- ..-|++...+.++.||..++ +.+....++|.+
T Consensus 78 qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~eta----vvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Y 153 (584)
T KOG2193|consen 78 QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETA----VVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGY 153 (584)
T ss_pred HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHH----HHHHHHHHHHHHHHHHHhhcchHhhhhhhhccc
Confidence 34678999999999999999999999999998854 3444322 23478888999999999997 558888888877
Q ss_pred cc
Q 023722 98 AC 99 (278)
Q Consensus 98 a~ 99 (278)
-.
T Consensus 154 iP 155 (584)
T KOG2193|consen 154 IP 155 (584)
T ss_pred Cc
Confidence 64
No 156
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=60.41 E-value=2 Score=29.85 Aligned_cols=37 Identities=22% Similarity=0.353 Sum_probs=23.1
Q ss_pred ccceEEEEeCC-HHHHHHHHHhcCCccCCeEEEEEEcc
Q 023722 63 SKGYGFVTFRE-PEAAMKACVDAAPVIDGRRANCNLAC 99 (278)
Q Consensus 63 skG~aFV~F~~-~~~A~~Ai~~~~~~i~Gr~i~V~~a~ 99 (278)
++|||||.-.+ .++.--.-+.++.-++|-++.|.+..
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGAMDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS-TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCCCCCCEEEEEEec
Confidence 57899999987 33332234555667899999988875
No 157
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=59.26 E-value=23 Score=28.28 Aligned_cols=47 Identities=15% Similarity=0.194 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeC-CHHHHHHHHHh
Q 023722 34 TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFR-EPEAAMKACVD 83 (278)
Q Consensus 34 ~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~-~~~~A~~Ai~~ 83 (278)
++.++|++.|+.|..++ |+.+.++ ..+.|+++|+|. |-.-.+.|++.
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHHH
Confidence 45678999999998764 5555554 357899999997 44455555544
No 158
>PF15063 TC1: Thyroid cancer protein 1
Probab=56.77 E-value=6.7 Score=29.00 Aligned_cols=69 Identities=17% Similarity=0.216 Sum_probs=46.0
Q ss_pred CcchhhhhccCCCCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEE---EEEEeecCCCCCccceEEEEeCCHHHHHHH
Q 023722 4 PVSAQAAAAGAGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEIL---EAVVITDKATGRSKGYGFVTFREPEAAMKA 80 (278)
Q Consensus 4 p~~~~~~~~~~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~---~v~i~~dk~tg~skG~aFV~F~~~~~A~~A 80 (278)
|++....+.......|...+|--+.||=++++.++|+++|.+-|..+ +++|+.. .-.|+++..+|
T Consensus 7 ~~S~~v~Ps~~g~~~dt~~RKkasaNIFe~vn~~qlqrLF~~sGD~kAEeRA~iI~~------------~~~d~ee~a~A 74 (79)
T PF15063_consen 7 SASVRVSPSVHGYKFDTASRKKASANIFENVNLDQLQRLFQKSGDKKAEERARIIWE------------CAQDPEEKARA 74 (79)
T ss_pred CcceeccCCCCCCCcchHHhhhhhhhhhhccCHHHHHHHHHHccchhHHHHHHHHHh------------hCCCHHHHHHH
Confidence 33334444344455667788888999999999999999999998643 3334322 12467766677
Q ss_pred HHhc
Q 023722 81 CVDA 84 (278)
Q Consensus 81 i~~~ 84 (278)
|..+
T Consensus 75 L~~L 78 (79)
T PF15063_consen 75 LMAL 78 (79)
T ss_pred HHhc
Confidence 7654
No 159
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=54.65 E-value=18 Score=30.68 Aligned_cols=57 Identities=23% Similarity=0.318 Sum_probs=42.6
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeC
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFR 72 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~ 72 (278)
.........+++.+++..++++++..+|..++.+..+.+...........+.++.+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (306)
T COG0724 219 ALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNE 275 (306)
T ss_pred cccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchh
Confidence 455677889999999999999999999999999988777665543333334443333
No 160
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.64 E-value=2 Score=41.78 Aligned_cols=76 Identities=7% Similarity=-0.156 Sum_probs=60.6
Q ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcc
Q 023722 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLAC 99 (278)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a~ 99 (278)
++.|+..|+-.++++++.-+|+.+|-|..+.+.+.-+.+..+-.+||+-.+ +++..||..+. ..+.+..+++.++.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 566788899999999999999999999999887766666677789998865 45677787774 55777777777764
No 161
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=53.87 E-value=13 Score=32.21 Aligned_cols=75 Identities=19% Similarity=0.173 Sum_probs=50.0
Q ss_pred CCccEEEECCCCCCCCHH-----HHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCe-E
Q 023722 20 TTYTKVFVGGLAWETQKE-----TMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGR-R 92 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee-----~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr-~ 92 (278)
+-.+++++.+|+.++-.+ ..+.+|.++-+.....+++. +++.-|.|.+++.+.+|...+. ..|.++ .
T Consensus 8 dlp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~ 81 (193)
T KOG4019|consen 8 DLPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNE 81 (193)
T ss_pred cccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCce
Confidence 345668888887764332 33455555544444444432 4466789999999999999986 568888 8
Q ss_pred EEEEEccc
Q 023722 93 ANCNLACL 100 (278)
Q Consensus 93 i~V~~a~~ 100 (278)
+++-++..
T Consensus 82 ~k~yfaQ~ 89 (193)
T KOG4019|consen 82 LKLYFAQP 89 (193)
T ss_pred EEEEEccC
Confidence 88888753
No 162
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=52.66 E-value=64 Score=23.86 Aligned_cols=56 Identities=14% Similarity=0.187 Sum_probs=39.0
Q ss_pred EEECCCCCCCCHHHHHHHHHh-cC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHh
Q 023722 25 VFVGGLAWETQKETMEKYFEQ-FG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83 (278)
Q Consensus 25 lfVgnLp~~~tee~L~~~F~~-fG-~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~ 83 (278)
-|+-.++.+.+..+|++.+++ |+ +|.+|..+.-+. +.. =|||++.+-++|.+.-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~-~~K--KA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR-GEK--KAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-Cce--EEEEEECCCCcHHHHHHh
Confidence 444457889999999999987 55 566776554432 222 499999888777765444
No 163
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=50.09 E-value=17 Score=33.67 Aligned_cols=35 Identities=23% Similarity=0.460 Sum_probs=27.5
Q ss_pred CccEEEECCCCCC------------CCHHHHHHHHHhcCCEEEEEEe
Q 023722 21 TYTKVFVGGLAWE------------TQKETMEKYFEQFGEILEAVVI 55 (278)
Q Consensus 21 ~~~~lfVgnLp~~------------~tee~L~~~F~~fG~I~~v~i~ 55 (278)
...+|++.+||-. -+|+.|+..|+.||+|..|.|+
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 4467888877632 4578899999999999999875
No 164
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=47.22 E-value=3.8 Score=41.02 Aligned_cols=66 Identities=15% Similarity=0.128 Sum_probs=50.4
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA 85 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~ 85 (278)
-..++|||.|+.++++-++|..+++.+--+.++.+..+-.-.+.+.+..|+|+--.....||..+|
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn 294 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALN 294 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhh
Confidence 456889999999999999999999988777777665443333455688999987666777777665
No 165
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=46.17 E-value=45 Score=23.73 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=16.2
Q ss_pred HHHHHHHHhcCCEEEEEEe
Q 023722 37 ETMEKYFEQFGEILEAVVI 55 (278)
Q Consensus 37 e~L~~~F~~fG~I~~v~i~ 55 (278)
.+||++|+..|+|.-+.|.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999999877664
No 166
>PRK11901 hypothetical protein; Reviewed
Probab=44.91 E-value=28 Score=32.81 Aligned_cols=63 Identities=14% Similarity=0.247 Sum_probs=41.2
Q ss_pred CccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEE--EeCCHHHHHHHHHhcCCcc
Q 023722 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFV--TFREPEAAMKACVDAAPVI 88 (278)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV--~F~~~~~A~~Ai~~~~~~i 88 (278)
...+|=|.. ..+++.|+.|..+++ +..+.|.+.+..|+.- |..| .|.+.++|++|++.|...|
T Consensus 244 ~~YTLQL~A---as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 244 SHYTLQLSS---ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred CCeEEEeec---CCCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCHHH
Confidence 334444433 456888998888875 4556666554444432 4433 6899999999999996544
No 167
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=43.76 E-value=99 Score=20.77 Aligned_cols=55 Identities=20% Similarity=0.173 Sum_probs=40.2
Q ss_pred EEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCH----HHHHHHHHhc
Q 023722 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREP----EAAMKACVDA 84 (278)
Q Consensus 24 ~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~----~~A~~Ai~~~ 84 (278)
+|.|.||.-.--...|++.+.+.-.|.++.+.... +-.-|+|... ++..++|+..
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~~~ 59 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIEKA 59 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHHHT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHHHh
Confidence 46677777666678899999999889999886653 3577888643 5666666654
No 168
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=43.72 E-value=28 Score=32.02 Aligned_cols=32 Identities=22% Similarity=0.069 Sum_probs=23.6
Q ss_pred EEEEeCCHHHHHHHHHhcCCccCCeEEEEEEcc
Q 023722 67 GFVTFREPEAAMKACVDAAPVIDGRRANCNLAC 99 (278)
Q Consensus 67 aFV~F~~~~~A~~Ai~~~~~~i~Gr~i~V~~a~ 99 (278)
|||+|++.++|+.|++.... .+.++++++.|.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~-~~~~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLS-KRPNSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhc-CCCCCceEeeCC
Confidence 69999999999999997542 223455777763
No 169
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=43.18 E-value=1.8e+02 Score=23.57 Aligned_cols=69 Identities=12% Similarity=0.043 Sum_probs=46.7
Q ss_pred cEEEECCCCCC---CCHHHHHHHHHhcC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccC-CeEEEEEE
Q 023722 23 TKVFVGGLAWE---TQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVID-GRRANCNL 97 (278)
Q Consensus 23 ~~lfVgnLp~~---~tee~L~~~F~~fG-~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~-Gr~i~V~~ 97 (278)
-.|-|...... .+-+++++.+++-| .+++++...+ -..|.|.+.|+..+|.+.+...+. +-.|.+++
T Consensus 36 pavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~~--------~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl 107 (127)
T PRK10629 36 STLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEND--------SLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQD 107 (127)
T ss_pred ceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeCC--------EEEEEECCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 34555544222 56778888888877 4556555433 578999999999999998875554 44666666
Q ss_pred cc
Q 023722 98 AC 99 (278)
Q Consensus 98 a~ 99 (278)
+.
T Consensus 108 ~p 109 (127)
T PRK10629 108 DN 109 (127)
T ss_pred CC
Confidence 63
No 170
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=40.79 E-value=11 Score=28.68 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=22.1
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHH
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYF 43 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F 43 (278)
.....++|-|.|||...+||+|++.+
T Consensus 48 ~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 48 SGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred EcccCCEEEEeCCCCCCChhhheeeE
Confidence 45667899999999999999999754
No 171
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.44 E-value=42 Score=34.04 Aligned_cols=80 Identities=16% Similarity=0.307 Sum_probs=57.5
Q ss_pred CCCccEEEECCCCCC-CCHHHHHHHHHhc----CCEEEEEEeecC----------CCCC---------------------
Q 023722 19 DTTYTKVFVGGLAWE-TQKETMEKYFEQF----GEILEAVVITDK----------ATGR--------------------- 62 (278)
Q Consensus 19 ~~~~~~lfVgnLp~~-~tee~L~~~F~~f----G~I~~v~i~~dk----------~tg~--------------------- 62 (278)
....++|-|-||.|+ +.-++|..+|+.| |.|++|.|.... .+|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456789999999997 8889999999877 689999875321 1111
Q ss_pred ---------------cc-ceEEEEeCCHHHHHHHHHhcCC-ccC--CeEEEEEEc
Q 023722 63 ---------------SK-GYGFVTFREPEAAMKACVDAAP-VID--GRRANCNLA 98 (278)
Q Consensus 63 ---------------sk-G~aFV~F~~~~~A~~Ai~~~~~-~i~--Gr~i~V~~a 98 (278)
.+ =||.|+|.+.+.|.+..+.+.. ++. +.+|.+++-
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 11 2788999999999998888853 343 445555554
No 172
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=39.90 E-value=37 Score=25.84 Aligned_cols=32 Identities=13% Similarity=0.211 Sum_probs=24.6
Q ss_pred EEEEeCCHHHHHHHHHhcCCc--cCCeEEEEEEc
Q 023722 67 GFVTFREPEAAMKACVDAAPV--IDGRRANCNLA 98 (278)
Q Consensus 67 aFV~F~~~~~A~~Ai~~~~~~--i~Gr~i~V~~a 98 (278)
|.|+|.+.+-|++.|+.-.+. +++.+++|.-.
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~ 34 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVS 34 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEE
Confidence 579999999999999877532 77777766554
No 173
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=37.49 E-value=22 Score=32.01 Aligned_cols=36 Identities=14% Similarity=0.313 Sum_probs=30.0
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEA 52 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v 52 (278)
..+.+.+.||+-|||..++++.|+++.+++|-+..+
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 345566789999999999999999999999855544
No 174
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=37.10 E-value=14 Score=35.71 Aligned_cols=64 Identities=17% Similarity=0.139 Sum_probs=51.3
Q ss_pred CCCccEEEECCCCCCCCHH--------HHHHHHHh--cCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHH
Q 023722 19 DTTYTKVFVGGLAWETQKE--------TMEKYFEQ--FGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV 82 (278)
Q Consensus 19 ~~~~~~lfVgnLp~~~tee--------~L~~~F~~--fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~ 82 (278)
+...+.+|+.++..+.+.+ ++...|.. .+.+..+...+|.....++|-.|++|+..+.+++.+.
T Consensus 171 ~~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 171 SQMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3345667777777665555 89999988 6788888888887677889999999999999999985
No 175
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=36.75 E-value=1.7e+02 Score=22.36 Aligned_cols=61 Identities=13% Similarity=0.219 Sum_probs=35.4
Q ss_pred ccEEEECCCCCCCCHHHHHHHHHh-------c-CCEEEEEEeecC-----CCCCccc-eEEEEeCCHHHHHHHHHhc
Q 023722 22 YTKVFVGGLAWETQKETMEKYFEQ-------F-GEILEAVVITDK-----ATGRSKG-YGFVTFREPEAAMKACVDA 84 (278)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~~-------f-G~I~~v~i~~dk-----~tg~skG-~aFV~F~~~~~A~~Ai~~~ 84 (278)
.-.+|| |.+++++++++.+.++ . |+|.++.-+-.+ ..+..+| |.++.|.-..++.+.++..
T Consensus 8 YE~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler~ 82 (97)
T CHL00123 8 YETMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEKA 82 (97)
T ss_pred eeEEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHHH
Confidence 345666 5677777776665544 3 467666533221 2244566 5788888666665555543
No 176
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.57 E-value=97 Score=25.97 Aligned_cols=47 Identities=19% Similarity=0.178 Sum_probs=38.0
Q ss_pred CCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC
Q 023722 29 GLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA 85 (278)
Q Consensus 29 nLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~ 85 (278)
.|++.+.+|.|.++.+-.|-|.+.+ -.| -...|.|.+.+.+||+++.
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~-E~D---------~V~i~Gd~drVk~aLke~~ 164 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFE-EYD---------LVAIYGDSDRVKKALKEIG 164 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEee-ecc---------EEEEeccHHHHHHHHHHHH
Confidence 4788899999999999999887765 333 3467889999999999874
No 177
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=34.75 E-value=68 Score=24.13 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=21.7
Q ss_pred CEEEEEEeecCCCCCccceEEEEeCC
Q 023722 48 EILEAVVITDKATGRSKGYGFVTFRE 73 (278)
Q Consensus 48 ~I~~v~i~~dk~tg~skG~aFV~F~~ 73 (278)
+|.+|+|.+-...++.|+||=|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 47888888777679999999999987
No 178
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=33.81 E-value=88 Score=23.68 Aligned_cols=48 Identities=23% Similarity=0.392 Sum_probs=33.8
Q ss_pred ccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeC
Q 023722 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFR 72 (278)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~ 72 (278)
..-|||++++..+.|.-.+.+.+..++-.-+-+..+.+ ..||.|-+.-
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~n---eqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNN---EQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCC---CCCEEEEEeC
Confidence 45699999999888887777777655544444444422 6789998874
No 179
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=32.45 E-value=1.5e+02 Score=25.79 Aligned_cols=47 Identities=28% Similarity=0.338 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhc
Q 023722 34 TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA 84 (278)
Q Consensus 34 ~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~ 84 (278)
.+.++.+++++++..-. ++|..|. ...|-+-+...|.++|.++|+.+
T Consensus 24 ~~~~~A~~~l~~~~~p~-~ViKadG---la~GKGV~i~~~~~eA~~~l~~~ 70 (194)
T PF01071_consen 24 TDYEEALEYLEEQGYPY-VVIKADG---LAAGKGVVIADDREEALEALREI 70 (194)
T ss_dssp SSHHHHHHHHHHHSSSE-EEEEESS---SCTTTSEEEESSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCc-eEEccCC---CCCCCEEEEeCCHHHHHHHHHHh
Confidence 36778888888776433 5565563 33333455569999999999987
No 180
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=30.88 E-value=2e+02 Score=20.96 Aligned_cols=57 Identities=18% Similarity=0.165 Sum_probs=35.1
Q ss_pred EEECCCCCCCCHHHHHHHH-------HhcCCEEEEEEeecCCCCC-ccc--eE-EEEeCCHHHHHHHH
Q 023722 25 VFVGGLAWETQKETMEKYF-------EQFGEILEAVVITDKATGR-SKG--YG-FVTFREPEAAMKAC 81 (278)
Q Consensus 25 lfVgnLp~~~tee~L~~~F-------~~fG~I~~v~i~~dk~tg~-skG--~a-FV~F~~~~~A~~Ai 81 (278)
|.+-.|.++++++++++++ .+.-.|+++.+-++-.... .++ ++ +++|+|.++.+.-.
T Consensus 4 ivlfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~~Y~ 71 (97)
T PF07876_consen 4 IVLFKLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSPEDLAKGYDHALVSTFESEEDLDAYQ 71 (97)
T ss_dssp EEEEEESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEESSTSSTSTT-SEEEEEEESSHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEcccCcccccCCCcEEEEEEECCHHHHHHHH
Confidence 4444577888888775544 3455678887766543222 233 44 36899988875543
No 181
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=30.69 E-value=65 Score=27.97 Aligned_cols=51 Identities=16% Similarity=0.069 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHh-cCCEEEEEEeecCCC-CCccceEEEEeCCHHHHHHHHHhc
Q 023722 34 TQKETMEKYFEQ-FGEILEAVVITDKAT-GRSKGYGFVTFREPEAAMKACVDA 84 (278)
Q Consensus 34 ~tee~L~~~F~~-fG~I~~v~i~~dk~t-g~skG~aFV~F~~~~~A~~Ai~~~ 84 (278)
.++++|..+..- -|++..|.+.+..+. -..+|--||+|.+.+.+.++++..
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~ 170 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTH 170 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhh
Confidence 455555554422 267888776554332 146789999999999998887765
No 182
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=30.36 E-value=37 Score=21.53 Aligned_cols=16 Identities=13% Similarity=0.435 Sum_probs=10.4
Q ss_pred CCCCHHHHHHHHHhcC
Q 023722 32 WETQKETMEKYFEQFG 47 (278)
Q Consensus 32 ~~~tee~L~~~F~~fG 47 (278)
.++++++||+.|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4789999999998754
No 183
>PF14401 RLAN: RimK-like ATPgrasp N-terminal domain
Probab=29.50 E-value=1.1e+02 Score=25.66 Aligned_cols=63 Identities=14% Similarity=0.201 Sum_probs=41.4
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHhcC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHH
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKA 80 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~fG-~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~A 80 (278)
.+.-..+||.|.-+..--++--+++|+.|- .|.+|.+.++....+-+....+...+..+.++.
T Consensus 83 ~~~~~l~iyFG~~~~~~~~~lAr~lFe~F~~PlL~v~~~~~~~~w~i~~i~~~~~~~l~~~e~~ 146 (153)
T PF14401_consen 83 SERFELSIYFGQTPDPRLERLARQLFERFPCPLLEVEFVRDDGKWRISSIKPLSLSELSEEEQD 146 (153)
T ss_pred CceEEEEEEECCCCCHHHHHHHHHHHHhCCCceEEEEEEecCCcEEEeeEeecChhhCCHHHHH
Confidence 444556789887765555556689999996 788888887754345555566655555444443
No 184
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=29.05 E-value=97 Score=24.04 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=32.6
Q ss_pred ccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCH
Q 023722 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREP 74 (278)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~ 74 (278)
..-|||++++..+.|.--+.+-+.+++-.-+-+..+. ...||.|-++.+.
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~---~eqG~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATN---TESGFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCC---CCCCcEEEecCCC
Confidence 3569999999888877666666666543333333332 2349999988754
No 185
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=28.94 E-value=80 Score=30.87 Aligned_cols=42 Identities=14% Similarity=0.326 Sum_probs=32.9
Q ss_pred CCCCCCCccEEEECCCCCC-CCHHHHHHHHHhc----CCEEEEEEee
Q 023722 15 GQFGDTTYTKVFVGGLAWE-TQKETMEKYFEQF----GEILEAVVIT 56 (278)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~-~tee~L~~~F~~f----G~I~~v~i~~ 56 (278)
.+.+....++|-|-||.|+ +..++|...|+.| |.|.+|.|..
T Consensus 139 ~pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyp 185 (622)
T COG5638 139 VPEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYP 185 (622)
T ss_pred ccCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEech
Confidence 3444556788999999997 8888999999876 6888888754
No 186
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=28.88 E-value=2.3e+02 Score=21.32 Aligned_cols=45 Identities=16% Similarity=0.111 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhc
Q 023722 36 KETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA 84 (278)
Q Consensus 36 ee~L~~~F~~fG-~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~ 84 (278)
++.+++++++.| +++++.+...+ ---...+++.|.+.+.++.-.+
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~----yD~v~i~eaPD~~~a~~~~l~i 67 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGE----YDFVVIVEAPDDETAAAASLAI 67 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCC----CCEEEEEEcCCHHHHHHHHHHH
Confidence 456788888876 78888776543 3446788999999888776555
No 187
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=28.49 E-value=74 Score=23.57 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=21.6
Q ss_pred ccceEEEEeCCHHHHHHHHHhcCCc
Q 023722 63 SKGYGFVTFREPEAAMKACVDAAPV 87 (278)
Q Consensus 63 skG~aFV~F~~~~~A~~Ai~~~~~~ 87 (278)
.|||-|||=.+.+++.+||+.+.+.
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTE
T ss_pred CceEEEEEeCCHHHHHHHHhcccce
Confidence 6899999999999999999988653
No 188
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=28.08 E-value=2.5e+02 Score=20.66 Aligned_cols=65 Identities=11% Similarity=0.035 Sum_probs=43.6
Q ss_pred EEEECCCCCCCCHHHHHHHHHhcC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCe
Q 023722 24 KVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGR 91 (278)
Q Consensus 24 ~lfVgnLp~~~tee~L~~~F~~fG-~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr 91 (278)
.|+|.|-|.- -+.+-.+|++-| .|+++.+-...+.+.+| +-++...+.+..+..++.+++.++=.
T Consensus 6 si~v~n~pGV--L~Ri~~lf~rRgfNI~Sl~vg~te~~~~sr-iti~~~~~~~~i~qi~kQL~KLidV~ 71 (76)
T PRK06737 6 SLVIHNDPSV--LLRISGIFARRGYYISSLNLNERDTSGVSE-MKLTAVCTENEATLLVSQLKKLINVL 71 (76)
T ss_pred EEEEecCCCH--HHHHHHHHhccCcceEEEEecccCCCCeeE-EEEEEECCHHHHHHHHHHHhCCcCEE
Confidence 4566655432 346778898887 78888775443334444 66776789999999988887655533
No 189
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.89 E-value=2.8e+02 Score=23.36 Aligned_cols=55 Identities=13% Similarity=0.162 Sum_probs=39.9
Q ss_pred cEEEECCCCCCCCHHHHHHHHHhc---CCEEEEEEeecCCC---------CCccc-eEEEEeCCHHHH
Q 023722 23 TKVFVGGLAWETQKETMEKYFEQF---GEILEAVVITDKAT---------GRSKG-YGFVTFREPEAA 77 (278)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~f---G~I~~v~i~~dk~t---------g~skG-~aFV~F~~~~~A 77 (278)
.+|++.-+.+-++|++.++..++= +++.+|.+-+.+++ ..-+. |-.|.|++-...
T Consensus 88 ~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~l 155 (161)
T COG5353 88 GKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKEL 155 (161)
T ss_pred CeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchhh
Confidence 789999999999999999998764 57777776554422 12233 788888876543
No 190
>KOG3432 consensus Vacuolar H+-ATPase V1 sector, subunit F [Energy production and conversion]
Probab=27.84 E-value=93 Score=24.79 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=22.4
Q ss_pred CccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEe
Q 023722 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVI 55 (278)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~ 55 (278)
...+++| +...+|+++|++.|.+|-.-.++.|+
T Consensus 34 r~~Nf~v--v~~~Tt~~eiedaF~~f~~RdDIaIi 66 (121)
T KOG3432|consen 34 REPNFLV--VDSKTTVEEIEDAFKSFTARDDIAII 66 (121)
T ss_pred CCCCEEE--EeccCCHHHHHHHHHhhccccCeEEE
Confidence 3344444 35689999999999999654444443
No 191
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=26.16 E-value=2.7e+02 Score=20.42 Aligned_cols=68 Identities=4% Similarity=-0.033 Sum_probs=42.0
Q ss_pred EEEECCCCCCCCHHHHHHHHHhcC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeEEEE
Q 023722 24 KVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (278)
Q Consensus 24 ~lfVgnLp~~~tee~L~~~F~~fG-~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i~V 95 (278)
.|.|.|-|- --+.+-.+|++-| .|+++.+-...+.+.++ .-++. .+....+..++.+++.++=.+++|
T Consensus 7 si~v~n~pG--VL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sr-iti~v-~~~~~i~ql~kQL~KL~dV~~V~~ 75 (76)
T PRK11152 7 TIKARFRPE--VLERVLRVVRHRGFQVCSMNMTQNTDAQNIN-IELTV-ASERPIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred EEEEECCcc--HHHHHHHHHhcCCeeeeeEEeeecCCCCEEE-EEEEE-CCCchHHHHHHHHhcCcCeEEEEE
Confidence 345555443 2346778999888 78888776543333333 44444 677777777788877666555544
No 192
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=24.79 E-value=1.1e+02 Score=23.53 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=20.7
Q ss_pred CEEEEEEeecCCCCCccceEEEEeCC
Q 023722 48 EILEAVVITDKATGRSKGYGFVTFRE 73 (278)
Q Consensus 48 ~I~~v~i~~dk~tg~skG~aFV~F~~ 73 (278)
+|++|+|.+-...++-|++|=|+|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 47888877655568899999999987
No 193
>PRK10905 cell division protein DamX; Validated
Probab=24.67 E-value=74 Score=30.00 Aligned_cols=62 Identities=11% Similarity=0.185 Sum_probs=38.8
Q ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEE--EEeCCHHHHHHHHHhcCCccC
Q 023722 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGF--VTFREPEAAMKACVDAAPVID 89 (278)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aF--V~F~~~~~A~~Ai~~~~~~i~ 89 (278)
.+|-|+- ..+++.|++|..+.+ +....+.....+|+.. |-. =.|.++++|++||+.|..+|.
T Consensus 248 YTLQL~A---~Ss~~~l~~fakKlg-L~~y~vy~TtRnGkpW-YVV~yG~YaSraeAk~AiakLPa~vQ 311 (328)
T PRK10905 248 YTLQLSS---SSNYDNLNGWAKKEN-LKNYVVYETTRNGQPW-YVLVSGVYASKEEAKRAVSTLPADVQ 311 (328)
T ss_pred eEEEEEe---cCCHHHHHHHHHHcC-CCceEEEEeccCCceE-EEEEecCCCCHHHHHHHHHHCCHHHH
Confidence 4444443 456788998888885 3433344433334322 332 268999999999999975443
No 194
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=24.15 E-value=74 Score=22.77 Aligned_cols=34 Identities=26% Similarity=0.414 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEE
Q 023722 34 TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFV 69 (278)
Q Consensus 34 ~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV 69 (278)
.-|.+|.++|-+--+|+++.|...|.- .+|-+||
T Consensus 30 ~~e~eler~fl~~P~v~e~~l~EKKri--~~G~gyV 63 (64)
T PF13046_consen 30 LVEVELERHFLPLPEVKEVALYEKKRI--RKGAGYV 63 (64)
T ss_pred HHHHHhhhhccCCCCceEEEEEEEEee--eCCceeE
Confidence 345677888888889999999877643 3455665
No 195
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=23.88 E-value=2.4e+02 Score=19.95 Aligned_cols=56 Identities=32% Similarity=0.346 Sum_probs=39.2
Q ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCH----HHHHHHHHhc
Q 023722 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREP----EAAMKACVDA 84 (278)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~----~~A~~Ai~~~ 84 (278)
.+|.|.++.=.--...+++.+++-..+.++++..++ +-++|+|++. ++..+||+..
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~------~~~~V~~d~~~~~~~~i~~ai~~a 63 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEK------GTATVTFDSNKVDIEAIIEAIEDA 63 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEccc------CeEEEEEcCCcCCHHHHHHHHHHc
Confidence 467777766555566888888888779999887773 3589999873 4444455544
No 196
>PF14893 PNMA: PNMA
Probab=23.54 E-value=81 Score=29.88 Aligned_cols=28 Identities=14% Similarity=0.279 Sum_probs=22.9
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHh
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQ 45 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~ 45 (278)
+-+..+.|.|.+||+++++++|++.+..
T Consensus 14 ~~~~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 14 GVDPQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred CcChhhhheeecCCCCCCHHHHHHHHHH
Confidence 3345688999999999999999888753
No 197
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.47 E-value=2.5e+02 Score=24.01 Aligned_cols=47 Identities=23% Similarity=0.174 Sum_probs=38.9
Q ss_pred CCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC
Q 023722 29 GLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA 85 (278)
Q Consensus 29 nLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~ 85 (278)
+|+..+.+|.|.++-+-+|-|.+. .+. --.+.|.+.+..++||+++.
T Consensus 118 ~l~~~i~~erl~ei~E~~gvI~Ef---ee~-------~~V~I~Gdke~Ik~aLKe~s 164 (169)
T PF09869_consen 118 KLKKPIQEERLQEISEWHGVIFEF---EED-------DKVVIEGDKERIKKALKEFS 164 (169)
T ss_pred ecCccchHHHHHHHHHHhceeEEe---cCC-------cEEEEeccHHHHHHHHHHHH
Confidence 689999999999999999988776 222 24678899999999999874
No 198
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=23.08 E-value=1.6e+02 Score=23.82 Aligned_cols=44 Identities=20% Similarity=0.393 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHh-cCCEEEEEE----eecCCCCCccceEEEEeCCHHHH
Q 023722 33 ETQKETMEKYFEQ-FGEILEAVV----ITDKATGRSKGYGFVTFREPEAA 77 (278)
Q Consensus 33 ~~tee~L~~~F~~-fG~I~~v~i----~~dk~tg~skG~aFV~F~~~~~A 77 (278)
+++.++|++-+.+ |-.-.++.+ ...-..|++.|||.| |++.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~a 82 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYA 82 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHH
Confidence 6888999888865 332223322 233345788899976 5555544
No 199
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=22.95 E-value=93 Score=23.53 Aligned_cols=30 Identities=10% Similarity=0.267 Sum_probs=22.0
Q ss_pred EECCCCCCCCHHHHHHHHHh-cC-CEEEEEEe
Q 023722 26 FVGGLAWETQKETMEKYFEQ-FG-EILEAVVI 55 (278)
Q Consensus 26 fVgnLp~~~tee~L~~~F~~-fG-~I~~v~i~ 55 (278)
++-.++.+++..+|++.+++ |+ .|.+|..+
T Consensus 23 ~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~ 54 (91)
T PF00276_consen 23 YTFEVDPRATKTEIKEAIEKIYGVKVKKVNTM 54 (91)
T ss_dssp EEEEETTTSTHHHHHHHHHHHHTSEEEEEEEE
T ss_pred EEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEe
Confidence 34457889999999999976 66 56666544
No 200
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=22.89 E-value=2.1e+02 Score=23.36 Aligned_cols=6 Identities=33% Similarity=0.872 Sum_probs=2.5
Q ss_pred cCCeEE
Q 023722 88 IDGRRA 93 (278)
Q Consensus 88 i~Gr~i 93 (278)
+++..|
T Consensus 96 lng~~i 101 (144)
T PLN03134 96 MDGKEL 101 (144)
T ss_pred cCCCEE
Confidence 444433
No 201
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=22.73 E-value=1.2e+02 Score=23.03 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=27.6
Q ss_pred EEECCCCCCCCHHHHHH---HHHhcCCEEEEEE--eecCCCCCccceEEEEeC
Q 023722 25 VFVGGLAWETQKETMEK---YFEQFGEILEAVV--ITDKATGRSKGYGFVTFR 72 (278)
Q Consensus 25 lfVgnLp~~~tee~L~~---~F~~fG~I~~v~i--~~dk~tg~skG~aFV~F~ 72 (278)
.|+.+||.++-+.+++. .|..+..-.+|.+ ........+.|++.+.+.
T Consensus 13 a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 13 AFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 47889999998887654 4444443233332 223455667777766553
No 202
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=22.69 E-value=2.8e+02 Score=22.89 Aligned_cols=33 Identities=21% Similarity=0.196 Sum_probs=25.8
Q ss_pred EEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC
Q 023722 49 ILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP 86 (278)
Q Consensus 49 I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~ 86 (278)
|.+|.++.. .+||-||+....+++..+|+.+.+
T Consensus 36 i~~i~vp~~-----fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAPPE-----LKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEccCC-----CCcEEEEEEEChHHHHHHHhcCCC
Confidence 556655443 589999999988999999988753
No 203
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.50 E-value=1.8e+02 Score=28.95 Aligned_cols=59 Identities=17% Similarity=0.197 Sum_probs=43.3
Q ss_pred EECCCCCCCC---HHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeEE
Q 023722 26 FVGGLAWETQ---KETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRA 93 (278)
Q Consensus 26 fVgnLp~~~t---ee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i 93 (278)
+||||..-.. ...++++=++||.|-.+++-.. -.|...+.+.|++++.....++.+|..
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHhCCccccCCCC
Confidence 5788865433 3455666678999998877432 357889999999999988777777764
No 204
>PHA01632 hypothetical protein
Probab=21.33 E-value=98 Score=21.60 Aligned_cols=19 Identities=11% Similarity=0.265 Sum_probs=15.6
Q ss_pred ECCCCCCCCHHHHHHHHHh
Q 023722 27 VGGLAWETQKETMEKYFEQ 45 (278)
Q Consensus 27 VgnLp~~~tee~L~~~F~~ 45 (278)
|..+|..-||++|++.+.+
T Consensus 21 ieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 21 IEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred hhhcCCCCCHHHHHHHHHH
Confidence 3478999999999988764
No 205
>PF13037 DUF3898: Domain of unknown function (DUF3898)
Probab=20.53 E-value=85 Score=23.90 Aligned_cols=52 Identities=21% Similarity=0.372 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHhcCCEEEEEEeecC-------C-CCCccceEEEEeCCHHHHHHHHHhc
Q 023722 33 ETQKETMEKYFEQFGEILEAVVITDK-------A-TGRSKGYGFVTFREPEAAMKACVDA 84 (278)
Q Consensus 33 ~~tee~L~~~F~~fG~I~~v~i~~dk-------~-tg~skG~aFV~F~~~~~A~~Ai~~~ 84 (278)
..++-++|.+++.||+-.++.-..|+ + -.=-||+.=|+|-.+++.+..++.+
T Consensus 30 KLd~~~Vk~lLaDfG~~iHiAKv~~RYv~liEgd~~~FEKG~SPVEflkP~~l~~V~eri 89 (91)
T PF13037_consen 30 KLDHTTVKGLLADFGETIHIAKVNDRYVLLIEGDSLQFEKGFSPVEFLKPEDLQEVIERI 89 (91)
T ss_pred ecCceehhHHHHhhccceeEEEECCEEEEEEEcceEEEccCCCceeeeCchhHHHHHHHh
Confidence 45666799999999975554322221 0 0113678889999999999888765
No 206
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=20.42 E-value=2.8e+02 Score=21.33 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=33.0
Q ss_pred HHHHHHHHhcC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCC
Q 023722 37 ETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDG 90 (278)
Q Consensus 37 e~L~~~F~~fG-~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G 90 (278)
+++++.+++-| .+++++...+ --.|.|++.++-.+|.+.+...+..
T Consensus 49 ~~v~~~L~~~~I~~k~i~~~~~--------~llirf~~~~~Ql~Ak~~L~~~L~~ 95 (101)
T PF13721_consen 49 FQVEQALKAAGIAVKSIEQEGD--------SLLIRFDSTDQQLKAKDVLSKALGD 95 (101)
T ss_pred HHHHHHHHHCCCCcceEEeeCC--------EEEEEECCHHHHHHHHHHHHHHcCC
Confidence 58888888877 4455554322 5789999999999988887655543
No 207
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=20.31 E-value=2.9e+02 Score=18.74 Aligned_cols=47 Identities=15% Similarity=0.206 Sum_probs=31.2
Q ss_pred CHHHHHHHHHhcC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC
Q 023722 35 QKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA 85 (278)
Q Consensus 35 tee~L~~~F~~fG-~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~ 85 (278)
.-.+|-++|.+.| .|+.+.+....+ ++.--+.+.+.+.+.++|++.+
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~----~~~~rl~~~~~~~~~~~L~~~G 61 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE----FGILRLIVSDPDKAKEALKEAG 61 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC----CCEEEEEECCHHHHHHHHHHCC
Confidence 3456778887776 688877644322 4566666778778888877654
Done!